# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|336475960|ref|YP_004615101.1| - 6.4e-25 87.0 0.2 1.5e-24 85.7 0.2 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|336475960|ref|YP_004615101.1| - 2.2e-11 44.2 0.0 5.6e-11 42.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336475960|ref|YP_004615101.1| - 1.4e-09 38.6 0.1 6e-08 33.2 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|336475960|ref|YP_004615101.1| - 8.6e-08 32.7 0.0 1.9e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|336475960|ref|YP_004615101.1| - 6.8e-06 25.6 0.3 2.4e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|336475960|ref|YP_004615101.1| - 1.3e-05 25.3 0.7 5.3e-05 23.3 0.7 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|336475960|ref|YP_004615101.1| - 0.00032 20.7 0.0 0.00058 19.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DEAD PF00270.29 gi|336475960|ref|YP_004615101.1| - 0.0028 17.5 0.3 2 8.2 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase DUF815 PF05673.13 gi|336475960|ref|YP_004615101.1| - 0.003 16.8 0.1 0.0062 15.7 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|336475960|ref|YP_004615101.1| - 0.0046 17.1 0.2 0.25 11.4 0.2 2.3 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) KAP_NTPase PF07693.14 gi|336475960|ref|YP_004615101.1| - 0.0065 15.8 0.7 0.29 10.3 0.0 2.1 1 1 0 2 2 2 1 KAP family P-loop domain DUF2075 PF09848.9 gi|336475960|ref|YP_004615101.1| - 0.0087 15.3 0.0 0.012 14.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) RuvB_N PF05496.12 gi|336475960|ref|YP_004615101.1| - 0.013 15.3 0.0 2.3 8.0 0.0 2.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|336475960|ref|YP_004615101.1| - 0.014 15.1 0.0 0.03 14.0 0.0 1.6 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_assoc_2 PF16193.5 gi|336475960|ref|YP_004615101.1| - 0.017 15.4 0.1 0.044 14.1 0.1 1.7 1 0 0 1 1 1 0 AAA C-terminal domain AAA_25 PF13481.6 gi|336475960|ref|YP_004615101.1| - 0.025 14.1 0.0 0.065 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|336475960|ref|YP_004615101.1| - 0.033 13.2 0.0 0.066 12.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.18 gi|336475960|ref|YP_004615101.1| - 0.033 13.5 0.9 0.32 10.3 0.0 2.6 3 1 0 3 3 3 0 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|336475960|ref|YP_004615101.1| - 0.034 13.9 0.3 0.074 12.8 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|336475960|ref|YP_004615101.1| - 0.076 13.6 0.0 0.22 12.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|336475960|ref|YP_004615101.1| - 0.08 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Kinesin PF00225.23 gi|336475960|ref|YP_004615101.1| - 0.082 11.8 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain AAA_7 PF12775.7 gi|336475960|ref|YP_004615101.1| - 0.094 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Peptidase_S24 PF00717.23 gi|336475961|ref|YP_004615102.1| - 3.6e-05 23.6 0.4 6.4e-05 22.8 0.4 1.4 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|336475962|ref|YP_004615103.1| - 8.7e-14 51.4 0.0 1.5e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|336475962|ref|YP_004615103.1| - 5.4e-12 46.6 0.1 8.7e-12 46.0 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|336475962|ref|YP_004615103.1| - 2.4e-10 40.8 0.0 6.4e-10 39.5 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Wyosine_form PF08608.12 gi|336475963|ref|YP_004615104.1| - 5.6e-21 74.7 0.0 9.9e-21 73.9 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|336475963|ref|YP_004615104.1| - 6.2e-18 65.7 0.0 1.7e-17 64.3 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Hydrolase PF00702.26 gi|336475963|ref|YP_004615104.1| - 0.0015 18.9 0.0 0.0054 17.0 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase eRF1_2 PF03464.15 gi|336475964|ref|YP_004615105.1| - 1.9e-42 144.7 0.0 3.3e-42 143.9 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|336475964|ref|YP_004615105.1| - 1.6e-31 109.1 0.5 9.4e-31 106.6 0.3 2.2 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|336475964|ref|YP_004615105.1| - 8.9e-14 51.6 0.0 2.2e-13 50.3 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|336475964|ref|YP_004615105.1| - 3.5e-13 50.0 0.0 6.5e-13 49.1 0.0 1.4 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|336475964|ref|YP_004615105.1| - 2.3e-11 44.1 0.0 3.7e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 RNA_POL_M_15KD PF02150.16 gi|336475964|ref|YP_004615105.1| - 0.0059 16.4 0.8 3.1 7.7 0.1 2.6 2 0 0 2 2 2 2 RNA polymerases M/15 Kd subunit DNA_ligase_ZBD PF03119.16 gi|336475964|ref|YP_004615105.1| - 0.0082 16.2 0.0 0.02 14.9 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.14 gi|336475964|ref|YP_004615105.1| - 0.02 14.7 1.0 1.6 8.6 0.0 2.9 2 0 0 2 2 2 0 Rad50 zinc hook motif HypA PF01155.19 gi|336475964|ref|YP_004615105.1| - 0.073 13.1 0.3 0.33 11.0 0.1 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|336475964|ref|YP_004615105.1| - 0.2 11.8 5.4 0.49 10.6 0.7 2.6 2 1 0 2 2 2 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|336475964|ref|YP_004615105.1| - 0.28 11.2 2.0 18 5.4 0.0 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|336475964|ref|YP_004615105.1| - 0.34 10.4 3.0 1.6 8.2 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|336475964|ref|YP_004615105.1| - 0.54 10.1 2.8 0.33 10.8 0.2 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Rubredoxin_2 PF18073.1 gi|336475964|ref|YP_004615105.1| - 2.1 8.2 4.8 6.5 6.6 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_2 PF13240.6 gi|336475964|ref|YP_004615105.1| - 9.2 6.1 6.6 6.9 6.5 0.5 2.4 2 0 0 2 2 2 0 zinc-ribbon domain tRNA-synt_1d PF00750.19 gi|336475965|ref|YP_004615106.1| - 2.4e-36 125.4 0.3 5.6e-36 124.2 0.4 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|336475965|ref|YP_004615106.1| - 3.1e-32 111.2 0.0 6.7e-32 110.2 0.0 1.6 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|336475965|ref|YP_004615106.1| - 7.5e-13 48.9 0.1 1.9e-12 47.6 0.1 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|336475965|ref|YP_004615106.1| - 4.1e-08 32.5 0.0 0.00029 19.9 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|336475965|ref|YP_004615106.1| - 5.6e-06 25.4 0.6 0.05 12.3 0.2 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|336475965|ref|YP_004615106.1| - 0.00078 18.9 0.2 0.0018 17.7 0.3 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|336475965|ref|YP_004615106.1| - 0.041 12.1 0.1 0.062 11.5 0.1 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) HSP20 PF00011.21 gi|336475966|ref|YP_004615107.1| - 0.0022 18.1 0.0 0.0036 17.4 0.0 1.5 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|336475966|ref|YP_004615107.1| - 0.015 14.9 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 HSP20-like domain found in ArsA DUF4147 PF13660.6 gi|336475967|ref|YP_004615108.1| - 8.2e-82 274.2 0.1 1.1e-81 273.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|336475967|ref|YP_004615108.1| - 3.9e-39 133.2 3.5 7.1e-39 132.4 3.5 1.5 1 0 0 1 1 1 1 MOFRL family Glycos_transf_2 PF00535.26 gi|336475968|ref|YP_004615109.1| - 7.1e-08 32.4 0.0 1.4e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Osmo_MPGsynth PF09488.10 gi|336475968|ref|YP_004615109.1| - 0.01 14.6 0.0 0.017 13.9 0.0 1.2 1 0 0 1 1 1 0 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) NTP_transf_3 PF12804.7 gi|336475968|ref|YP_004615109.1| - 0.058 13.7 0.0 0.089 13.2 0.0 1.3 1 0 0 1 1 1 0 MobA-like NTP transferase domain cobW PF02492.19 gi|336475969|ref|YP_004615110.1| - 2.5e-39 134.7 0.1 3.6e-39 134.2 0.1 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|336475969|ref|YP_004615110.1| - 0.034 13.8 0.2 0.066 12.8 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CEP170_C PF15308.6 gi|336475969|ref|YP_004615110.1| - 0.054 12.1 0.3 0.21 10.1 0.1 1.8 2 0 0 2 2 2 0 CEP170 C-terminus Viral_helicase1 PF01443.18 gi|336475969|ref|YP_004615110.1| - 0.092 12.5 0.3 0.17 11.6 0.1 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase MeaB PF03308.16 gi|336475969|ref|YP_004615110.1| - 0.12 11.4 0.4 0.27 10.2 0.2 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 gi|336475969|ref|YP_004615110.1| - 0.13 12.3 2.3 0.21 11.7 0.3 2.2 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain URO-D PF01208.17 gi|336475970|ref|YP_004615111.1| - 8.9e-80 268.4 0.0 1e-79 268.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) SpoIIM PF01944.17 gi|336475972|ref|YP_004615113.1| - 4.5e-15 56.0 23.0 1.6e-14 54.2 11.9 2.6 2 1 0 2 2 2 2 Stage II sporulation protein M ZT_dimer PF16916.5 gi|336475972|ref|YP_004615113.1| - 0.13 12.4 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter ATPase PF06745.13 gi|336475973|ref|YP_004615114.1| - 9.5e-51 172.4 0.1 1.7e-50 171.5 0.1 1.4 1 1 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|336475973|ref|YP_004615114.1| - 4.9e-08 32.6 0.0 7.1e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|336475973|ref|YP_004615114.1| - 8.2e-08 32.0 0.0 0.002 17.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|336475973|ref|YP_004615114.1| - 0.00014 21.6 0.2 0.3 10.8 0.1 2.8 1 1 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|336475973|ref|YP_004615114.1| - 0.0013 18.8 0.0 0.0022 18.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|336475973|ref|YP_004615114.1| - 0.0015 17.8 0.6 0.0054 16.0 0.2 1.9 2 0 0 2 2 2 1 Rad51 AAA_22 PF13401.6 gi|336475973|ref|YP_004615114.1| - 0.0034 17.7 0.0 0.0077 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|336475973|ref|YP_004615114.1| - 0.0067 16.4 0.2 0.082 12.8 0.0 2.0 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|336475973|ref|YP_004615114.1| - 0.0085 16.0 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|336475973|ref|YP_004615114.1| - 0.011 16.1 0.2 0.059 13.8 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) GvpD PF07088.11 gi|336475973|ref|YP_004615114.1| - 0.016 13.9 0.1 0.084 11.5 0.1 1.9 1 1 0 1 1 1 0 GvpD gas vesicle protein AAA_16 PF13191.6 gi|336475973|ref|YP_004615114.1| - 0.017 15.5 0.0 0.02 15.3 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|336475973|ref|YP_004615114.1| - 0.017 15.3 0.0 0.045 13.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain rve_2 PF13333.6 gi|336475973|ref|YP_004615114.1| - 0.034 14.3 0.1 0.074 13.2 0.1 1.5 1 0 0 1 1 1 0 Integrase core domain RNA_helicase PF00910.22 gi|336475973|ref|YP_004615114.1| - 0.052 13.9 0.0 0.65 10.4 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_11 PF13086.6 gi|336475973|ref|YP_004615114.1| - 0.058 13.2 0.0 0.1 12.3 0.0 1.4 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|336475973|ref|YP_004615114.1| - 0.063 13.2 0.0 0.2 11.6 0.0 1.8 2 1 0 2 2 2 0 NACHT domain PAXNEB PF05625.11 gi|336475973|ref|YP_004615114.1| - 0.15 11.2 0.5 2.5 7.2 0.1 2.3 2 1 0 2 2 2 0 PAXNEB protein AAA_19 PF13245.6 gi|336475973|ref|YP_004615114.1| - 0.19 12.1 0.1 0.5 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|336475973|ref|YP_004615114.1| - 0.19 10.9 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Tox-GHH PF15636.6 gi|336475974|ref|YP_004615115.1| - 0.14 12.1 0.5 7.6 6.6 0.1 2.5 2 1 1 3 3 3 0 GHH signature containing HNH/Endo VII superfamily nuclease toxin Yae1_N PF09811.9 gi|336475974|ref|YP_004615115.1| - 0.14 11.8 0.3 5 6.9 0.0 2.4 2 0 0 2 2 2 0 Essential protein Yae1, N terminal GTP_EFTU_D2 PF03144.25 gi|336475975|ref|YP_004615116.1| - 5e-09 36.4 0.8 4e-08 33.5 0.2 2.6 3 0 0 3 3 3 1 Elongation factor Tu domain 2 GTP_EFTU PF00009.27 gi|336475975|ref|YP_004615116.1| - 1.1e-05 25.1 0.1 0.0016 18.0 0.0 2.3 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain PduV-EutP PF10662.9 gi|336475975|ref|YP_004615116.1| - 0.0045 16.7 1.1 0.042 13.6 1.1 2.3 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 gi|336475975|ref|YP_004615116.1| - 0.0075 16.8 0.4 0.038 14.5 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|336475975|ref|YP_004615116.1| - 0.01 15.6 0.6 0.019 14.7 0.6 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|336475975|ref|YP_004615116.1| - 0.015 15.6 0.1 0.05 13.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|336475975|ref|YP_004615116.1| - 0.032 14.5 0.3 0.063 13.5 0.3 1.5 1 0 0 1 1 1 0 AAA domain Arf PF00025.21 gi|336475975|ref|YP_004615116.1| - 0.045 13.2 0.3 2.3 7.7 0.1 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family NACHT PF05729.12 gi|336475975|ref|YP_004615116.1| - 0.14 12.1 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|336475975|ref|YP_004615116.1| - 0.14 12.3 0.0 0.41 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|336475975|ref|YP_004615116.1| - 0.22 11.7 1.2 0.34 11.1 0.2 1.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Lig_C PF18330.1 gi|336475976|ref|YP_004615117.1| - 5.6e-45 152.4 0.1 1e-44 151.5 0.1 1.5 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|336475976|ref|YP_004615117.1| - 1.5e-16 61.1 0.1 3.7e-16 59.8 0.0 1.7 2 0 0 2 2 2 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|336475976|ref|YP_004615117.1| - 0.00014 21.6 0.1 0.015 14.9 0.1 2.4 1 1 0 1 1 1 1 ATP dependent DNA ligase domain HTH_17 PF12728.7 gi|336475976|ref|YP_004615117.1| - 0.092 13.0 0.1 0.38 11.0 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain CBS PF00571.28 gi|336475977|ref|YP_004615118.1| - 1.7e-38 130.9 12.8 1.5e-12 47.7 0.5 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|336475978|ref|YP_004615119.1| - 4.2e-45 152.0 21.4 9.4e-14 51.6 0.8 4.2 4 0 0 4 4 4 4 CBS domain IF3_N PF05198.16 gi|336475978|ref|YP_004615119.1| - 0.092 13.0 2.6 45 4.4 0.0 3.8 4 0 0 4 4 4 0 Translation initiation factor IF-3, N-terminal domain CBS PF00571.28 gi|336475979|ref|YP_004615120.1| - 1.1e-57 192.3 10.4 4.4e-15 55.9 0.1 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|336475980|ref|YP_004615121.1| - 6.5e-50 167.4 9.9 5.3e-13 49.2 0.3 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|336475981|ref|YP_004615122.1| - 3.5e-25 88.2 4.8 6.5e-14 52.1 0.2 2.2 2 0 0 2 2 2 2 CBS domain Het-C PF07217.11 gi|336475981|ref|YP_004615122.1| - 0.01 14.4 0.1 0.012 14.2 0.1 1.1 1 0 0 1 1 1 0 Heterokaryon incompatibility protein Het-C tRNA_anti-codon PF01336.25 gi|336475982|ref|YP_004615123.1| - 3.7e-28 97.3 9.5 1.4e-10 41.0 0.7 3.5 3 1 1 4 4 4 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|336475982|ref|YP_004615123.1| - 1.1e-14 54.7 1.3 7.6e-06 25.8 0.0 3.2 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|336475982|ref|YP_004615123.1| - 1.3e-09 37.9 1.9 0.032 14.2 0.1 3.4 3 0 0 3 3 3 3 Replication protein A OB domain POT1PC PF16686.5 gi|336475982|ref|YP_004615123.1| - 0.00011 22.2 0.0 0.038 13.9 0.0 3.0 3 0 0 3 3 3 1 ssDNA-binding domain of telomere protection protein DUF3127 PF11325.8 gi|336475982|ref|YP_004615123.1| - 0.00024 21.3 1.8 4.4 7.6 0.0 3.5 3 0 0 3 3 3 2 Domain of unknown function (DUF3127) Rep_fac-A_C PF08646.10 gi|336475982|ref|YP_004615123.1| - 0.00092 19.0 0.0 10 5.8 0.0 3.3 3 0 0 3 3 3 2 Replication factor-A C terminal domain DUF2240 PF09999.9 gi|336475982|ref|YP_004615123.1| - 0.11 12.1 0.1 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) BOF PF04076.13 gi|336475982|ref|YP_004615123.1| - 0.58 10.2 7.2 2.2 8.4 0.4 4.0 3 2 1 4 4 4 0 Bacterial OB fold (BOF) protein PTS_2-RNA PF01885.16 gi|336475983|ref|YP_004615124.1| - 3.2e-27 95.7 0.0 3.9e-27 95.5 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family zinc_ribbon_4 PF13717.6 gi|336475983|ref|YP_004615124.1| - 0.23 11.4 1.1 15 5.6 0.0 2.9 3 0 0 3 3 3 0 zinc-ribbon domain RTC PF01137.21 gi|336475984|ref|YP_004615125.1| - 1.2e-81 273.2 0.0 1.4e-81 273.0 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|336475984|ref|YP_004615125.1| - 3.1e-12 46.9 0.0 5.3e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Toprim_4 PF13662.6 gi|336475985|ref|YP_004615126.1| - 9.1e-13 48.5 0.1 3e-12 46.8 0.1 1.9 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|336475985|ref|YP_004615126.1| - 2.3e-06 27.9 0.0 8.5e-06 26.1 0.0 2.0 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|336475985|ref|YP_004615126.1| - 0.0018 18.4 0.1 0.0087 16.3 0.1 2.2 1 1 0 1 1 1 1 Toprim domain UPF0058 PF01893.16 gi|336475986|ref|YP_004615127.1| - 3.1e-35 120.3 4.5 3.6e-35 120.1 4.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF148 PF02520.17 gi|336475986|ref|YP_004615127.1| - 0.023 14.8 0.4 0.043 13.9 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function DUF148 Acetyltransf_1 PF00583.25 gi|336475987|ref|YP_004615128.1| - 2.1e-18 66.6 0.0 2.6e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336475987|ref|YP_004615128.1| - 5e-14 52.5 0.1 7.1e-14 52.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336475987|ref|YP_004615128.1| - 6.6e-14 51.9 0.0 7.8e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336475987|ref|YP_004615128.1| - 7.5e-09 36.4 0.0 2.3e-08 34.8 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336475987|ref|YP_004615128.1| - 2.4e-08 33.8 0.0 3.3e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|336475987|ref|YP_004615128.1| - 0.00052 19.7 0.0 0.00078 19.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|336475987|ref|YP_004615128.1| - 0.0029 17.8 0.0 0.0049 17.0 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336475987|ref|YP_004615128.1| - 0.0054 16.8 0.0 0.083 13.0 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336475987|ref|YP_004615128.1| - 0.019 15.1 0.0 0.03 14.5 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|336475987|ref|YP_004615128.1| - 0.056 12.9 0.0 0.058 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative acetyl-transferase DUF2156 PF09924.9 gi|336475987|ref|YP_004615128.1| - 0.1 11.6 0.0 0.15 11.0 0.0 1.3 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) GNAT_acetyltr_2 PF13718.6 gi|336475987|ref|YP_004615128.1| - 0.11 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DUF5591 PF17884.1 gi|336475988|ref|YP_004615129.1| - 8.9e-57 191.3 0.0 1.7e-56 190.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C2 PF14810.6 gi|336475988|ref|YP_004615129.1| - 2.9e-15 56.2 0.0 6.9e-15 54.9 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.18 gi|336475988|ref|YP_004615129.1| - 3.1e-14 52.9 0.0 2.2e-13 50.1 0.0 2.0 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|336475988|ref|YP_004615129.1| - 4.2e-10 39.4 0.0 1.1e-09 38.1 0.0 1.7 1 0 0 1 1 1 1 PUA domain FAD-oxidase_C PF02913.19 gi|336475989|ref|YP_004615130.1| - 2.5e-58 197.6 0.1 3.2e-58 197.3 0.1 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|336475989|ref|YP_004615130.1| - 9e-45 151.8 1.2 1.4e-44 151.2 0.4 1.8 2 0 0 2 2 2 1 FAD binding domain CFEM PF05730.11 gi|336475989|ref|YP_004615130.1| - 0.17 12.0 0.2 0.33 11.1 0.2 1.4 1 0 0 1 1 1 0 CFEM domain CCG PF02754.16 gi|336475990|ref|YP_004615131.1| - 1.4e-32 111.7 1.1 6.4e-16 58.3 0.1 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|336475990|ref|YP_004615131.1| - 3.2e-11 43.5 4.7 3.2e-11 43.5 4.7 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336475990|ref|YP_004615131.1| - 1.6e-09 38.1 5.6 1.6e-09 38.1 5.6 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336475990|ref|YP_004615131.1| - 8.1e-08 32.7 5.8 8.1e-08 32.7 5.8 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336475990|ref|YP_004615131.1| - 1.1e-05 25.5 16.4 0.00018 21.6 12.6 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336475990|ref|YP_004615131.1| - 5.3e-05 22.9 14.2 0.00091 19.0 2.4 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336475990|ref|YP_004615131.1| - 0.00015 21.9 17.1 0.00019 21.5 11.8 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336475990|ref|YP_004615131.1| - 0.0016 18.4 14.7 0.0028 17.7 5.3 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336475990|ref|YP_004615131.1| - 0.0062 16.9 2.1 0.0062 16.9 2.1 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336475990|ref|YP_004615131.1| - 0.049 13.8 3.7 4.7 7.4 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336475990|ref|YP_004615131.1| - 0.051 14.5 20.8 0.053 14.5 14.5 3.3 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|336475990|ref|YP_004615131.1| - 0.17 12.8 13.3 1.2 10.1 0.6 3.5 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336475990|ref|YP_004615131.1| - 0.22 11.7 19.4 0.096 12.8 1.3 4.1 4 1 0 4 4 4 0 4Fe-4S dicluster domain Radical_SAM_N PF08497.10 gi|336475991|ref|YP_004615132.1| - 9.2e-130 432.2 0.0 1.4e-129 431.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|336475991|ref|YP_004615132.1| - 8.4e-27 94.3 0.1 1.2e-26 93.8 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|336475991|ref|YP_004615132.1| - 2.1e-15 57.5 0.1 1.6e-14 54.6 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|336475991|ref|YP_004615132.1| - 0.0002 21.4 0.0 0.12 12.5 0.0 2.7 2 0 0 2 2 2 2 B12 binding domain Metallophos PF00149.28 gi|336475991|ref|YP_004615132.1| - 0.16 12.5 0.0 0.32 11.5 0.0 1.6 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase Lactamase_B PF00753.27 gi|336475992|ref|YP_004615133.1| - 3e-32 112.2 0.1 3.7e-32 111.9 0.1 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336475992|ref|YP_004615133.1| - 2.3e-06 27.3 0.0 3.6e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|336475992|ref|YP_004615133.1| - 0.00086 18.8 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|336475992|ref|YP_004615133.1| - 0.0071 16.2 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain G3P_antiterm PF04309.12 gi|336475992|ref|YP_004615133.1| - 0.084 12.3 0.1 0.16 11.4 0.1 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator TatD_DNase PF01026.21 gi|336475993|ref|YP_004615134.1| - 1.5e-61 208.0 0.2 1.8e-61 207.8 0.2 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|336475993|ref|YP_004615134.1| - 6e-05 22.5 0.1 7.8e-05 22.1 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family DRTGG PF07085.12 gi|336475993|ref|YP_004615134.1| - 0.031 14.1 0.1 1.1 9.1 0.0 2.6 3 1 0 3 3 3 0 DRTGG domain HMGL-like PF00682.19 gi|336475994|ref|YP_004615135.1| - 1.7e-74 250.7 2.8 2.9e-74 249.9 2.8 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|336475994|ref|YP_004615135.1| - 1.2e-31 109.4 3.1 2e-31 108.7 3.1 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.24 gi|336475994|ref|YP_004615135.1| - 0.083 12.3 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DDE_Tnp_1 PF01609.21 gi|336475995|ref|YP_004615136.1| - 1.8e-06 27.8 4.0 4.1e-06 26.6 4.0 1.6 1 1 0 1 1 1 1 Transposase DDE domain UPF0270 PF06794.12 gi|336475995|ref|YP_004615136.1| - 0.66 10.1 2.8 2.5 8.2 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0270) Rhomboid PF01694.22 gi|336475996|ref|YP_004615137.1| - 1.4e-09 38.2 24.2 2.3e-06 27.7 14.3 2.6 3 0 0 3 3 3 2 Rhomboid family NAC PF01849.18 gi|336475997|ref|YP_004615138.1| - 5.1e-18 64.8 2.8 9.4e-18 63.9 2.8 1.4 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|336475997|ref|YP_004615138.1| - 0.00015 21.5 0.1 0.00024 20.8 0.1 1.4 1 0 0 1 1 1 1 UBA-like domain UBA PF00627.31 gi|336475997|ref|YP_004615138.1| - 0.028 14.3 0.2 0.088 12.7 0.1 2.0 2 0 0 2 2 2 0 UBA/TS-N domain HOIP-UBA PF16678.5 gi|336475997|ref|YP_004615138.1| - 0.034 14.1 0.7 0.038 14.0 0.4 1.5 1 1 0 1 1 1 0 HOIP UBA domain pair Fe-S_biosyn PF01521.20 gi|336475998|ref|YP_004615139.1| - 2.9e-13 50.0 0.1 3.5e-13 49.7 0.1 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis NosL PF05573.12 gi|336475998|ref|YP_004615139.1| - 0.077 13.3 0.0 0.097 13.0 0.0 1.1 1 0 0 1 1 1 0 NosL Mrr_cat PF04471.12 gi|336475999|ref|YP_004615140.1| - 0.00083 19.4 0.0 0.0031 17.5 0.0 1.9 1 1 0 1 1 1 1 Restriction endonuclease PepSY PF03413.19 gi|336475999|ref|YP_004615140.1| - 0.027 15.1 0.0 0.15 12.6 0.0 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain ATPase PF06745.13 gi|336476000|ref|YP_004615141.1| - 4.9e-35 121.0 0.3 7.1e-35 120.4 0.3 1.2 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|336476000|ref|YP_004615141.1| - 4.4e-09 35.5 0.1 5.8e-09 35.1 0.1 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein PAXNEB PF05625.11 gi|336476000|ref|YP_004615141.1| - 2e-05 23.9 3.1 0.0061 15.7 0.1 2.0 1 1 0 2 2 2 2 PAXNEB protein Rad51 PF08423.11 gi|336476000|ref|YP_004615141.1| - 0.00086 18.6 0.0 0.0017 17.7 0.0 1.6 1 1 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|336476000|ref|YP_004615141.1| - 0.015 14.7 0.0 0.041 13.2 0.0 1.6 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain ADP_PFK_GK PF04587.15 gi|336476000|ref|YP_004615141.1| - 0.025 13.2 0.1 0.053 12.1 0.1 1.4 1 1 0 1 1 1 0 ADP-specific Phosphofructokinase/Glucokinase conserved region PRA-CH PF01502.18 gi|336476001|ref|YP_004615142.1| - 7.1e-35 118.7 1.2 1e-34 118.2 1.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase DUF5514 PF17633.2 gi|336476001|ref|YP_004615142.1| - 0.062 13.5 0.0 0.074 13.3 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5514) T2SSE PF00437.20 gi|336476002|ref|YP_004615143.1| - 5.7e-13 48.5 0.0 1.6e-12 47.1 0.0 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|336476002|ref|YP_004615143.1| - 9.4e-08 32.6 0.0 2.2e-07 31.4 0.0 1.7 1 0 0 1 1 1 1 PIN domain KH_1 PF00013.29 gi|336476002|ref|YP_004615143.1| - 4.2e-05 23.3 1.7 0.00022 21.0 0.4 2.9 3 0 0 3 3 3 1 KH domain AAA_16 PF13191.6 gi|336476002|ref|YP_004615143.1| - 0.00041 20.8 0.0 0.00091 19.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain TIP49 PF06068.13 gi|336476002|ref|YP_004615143.1| - 0.00057 19.2 0.3 0.0017 17.7 0.0 1.9 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_11 PF13086.6 gi|336476002|ref|YP_004615143.1| - 0.0038 17.1 0.0 0.026 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|336476002|ref|YP_004615143.1| - 0.0054 16.5 0.0 0.018 14.8 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|336476002|ref|YP_004615143.1| - 0.0082 16.6 0.0 0.02 15.3 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|336476002|ref|YP_004615143.1| - 0.0088 16.0 0.0 0.19 11.7 0.0 2.3 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE KH_2 PF07650.17 gi|336476002|ref|YP_004615143.1| - 0.013 15.3 2.2 0.013 15.3 2.2 2.5 2 1 0 2 2 2 0 KH domain AAA_33 PF13671.6 gi|336476002|ref|YP_004615143.1| - 0.014 15.6 0.0 0.031 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|336476002|ref|YP_004615143.1| - 0.015 14.7 0.0 0.048 13.0 0.0 1.8 1 0 0 1 1 1 0 KaiC NACHT PF05729.12 gi|336476002|ref|YP_004615143.1| - 0.016 15.2 0.1 0.044 13.7 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|336476002|ref|YP_004615143.1| - 0.016 14.9 0.1 0.84 9.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain PIN_4 PF13638.6 gi|336476002|ref|YP_004615143.1| - 0.024 14.9 0.0 0.054 13.8 0.0 1.6 1 0 0 1 1 1 0 PIN domain AAA_22 PF13401.6 gi|336476002|ref|YP_004615143.1| - 0.024 14.9 0.0 0.85 9.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|336476002|ref|YP_004615143.1| - 0.025 15.1 0.0 0.056 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|336476002|ref|YP_004615143.1| - 0.032 14.2 0.0 0.1 12.5 0.0 1.9 1 0 0 1 1 1 0 NTPase RNA_helicase PF00910.22 gi|336476002|ref|YP_004615143.1| - 0.046 14.1 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|336476002|ref|YP_004615143.1| - 0.068 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|336476002|ref|YP_004615143.1| - 0.085 13.4 0.0 0.5 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|336476002|ref|YP_004615143.1| - 0.095 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|336476002|ref|YP_004615143.1| - 0.096 12.4 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|336476002|ref|YP_004615143.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 IstB_IS21 PF01695.17 gi|336476002|ref|YP_004615143.1| - 0.13 11.9 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein CbiA PF01656.23 gi|336476002|ref|YP_004615143.1| - 0.15 12.1 0.0 0.46 10.5 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain UPF0086 PF01868.16 gi|336476002|ref|YP_004615143.1| - 0.16 11.9 0.3 0.76 9.7 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function UPF0086 KH_4 PF13083.6 gi|336476002|ref|YP_004615143.1| - 0.59 10.1 4.2 0.21 11.5 0.3 2.3 3 0 0 3 3 2 0 KH domain UDPG_MGDP_dh_N PF03721.14 gi|336476003|ref|YP_004615144.1| - 6.6e-64 214.9 0.3 9.7e-64 214.4 0.3 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|336476003|ref|YP_004615144.1| - 1.5e-37 127.7 0.0 3.7e-37 126.4 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|336476003|ref|YP_004615144.1| - 3.5e-28 98.1 0.0 9.3e-28 96.7 0.0 1.8 2 0 0 2 2 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 3HCDH_N PF02737.18 gi|336476003|ref|YP_004615144.1| - 4.8e-06 26.6 0.1 1.3e-05 25.2 0.0 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|336476003|ref|YP_004615144.1| - 5.5e-05 23.7 0.0 0.0087 16.6 0.0 3.4 4 0 0 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|336476003|ref|YP_004615144.1| - 5.7e-05 23.1 0.0 0.00018 21.5 0.0 1.8 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|336476003|ref|YP_004615144.1| - 0.0019 18.4 0.0 0.14 12.3 0.0 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|336476003|ref|YP_004615144.1| - 0.0019 17.9 0.0 0.0032 17.1 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|336476003|ref|YP_004615144.1| - 0.0026 18.3 0.1 0.0094 16.5 0.1 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|336476003|ref|YP_004615144.1| - 0.0035 16.7 0.1 0.031 13.6 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|336476003|ref|YP_004615144.1| - 0.0042 17.3 0.2 0.012 15.8 0.2 1.8 1 0 0 1 1 1 1 TrkA-N domain Pyr_redox_2 PF07992.14 gi|336476003|ref|YP_004615144.1| - 0.0044 16.3 0.1 0.0096 15.2 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DpaA_N PF16924.5 gi|336476003|ref|YP_004615144.1| - 0.0059 16.7 0.1 2 8.5 0.0 3.0 3 0 0 3 3 3 1 Dipicolinate synthase subunit A N-terminal domain GFO_IDH_MocA PF01408.22 gi|336476003|ref|YP_004615144.1| - 0.012 16.5 0.0 0.069 14.0 0.0 2.2 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.21 gi|336476003|ref|YP_004615144.1| - 0.019 14.2 0.0 0.039 13.2 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|336476003|ref|YP_004615144.1| - 0.048 13.9 0.4 0.25 11.6 0.1 2.4 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Prefoldin_3 PF13758.6 gi|336476004|ref|YP_004615145.1| - 0.016 15.2 1.1 0.52 10.4 0.1 2.8 2 1 1 3 3 3 0 Prefoldin subunit NPV_P10 PF05531.12 gi|336476004|ref|YP_004615145.1| - 0.031 14.7 0.3 0.26 11.8 0.3 2.1 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein FH2 PF02181.23 gi|336476004|ref|YP_004615145.1| - 0.086 11.9 1.0 7.6 5.5 0.1 2.0 1 1 1 2 2 2 0 Formin Homology 2 Domain DUF45 PF01863.17 gi|336476004|ref|YP_004615145.1| - 0.1 12.7 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF45 YscO PF07321.12 gi|336476004|ref|YP_004615145.1| - 0.11 12.4 0.3 0.27 11.2 0.3 1.7 1 1 0 1 1 1 0 Type III secretion protein YscO ATP1G1_PLM_MAT8 PF02038.16 gi|336476004|ref|YP_004615145.1| - 0.13 11.7 0.2 0.23 10.9 0.2 1.4 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family Csm1_N PF18504.1 gi|336476004|ref|YP_004615145.1| - 0.13 12.6 2.0 9.1 6.7 0.1 3.0 3 0 0 3 3 3 0 Csm1 N-terminal domain TSC22 PF01166.18 gi|336476004|ref|YP_004615145.1| - 0.15 12.4 0.4 19 5.7 0.0 2.3 2 0 0 2 2 2 0 TSC-22/dip/bun family DUF1192 PF06698.11 gi|336476004|ref|YP_004615145.1| - 0.16 12.0 0.5 0.29 11.2 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Sugarporin_N PF11471.8 gi|336476004|ref|YP_004615145.1| - 0.2 11.7 0.4 0.89 9.6 0.1 2.0 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension CarboxypepD_reg PF13620.6 gi|336476006|ref|YP_004615147.1| - 1.7e-05 25.0 0.9 0.00012 22.3 0.9 2.1 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|336476006|ref|YP_004615147.1| - 3.5e-05 23.7 0.9 7.6e-05 22.6 0.9 1.5 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|336476006|ref|YP_004615147.1| - 0.0064 16.6 0.1 0.011 15.8 0.1 1.5 1 0 0 1 1 1 1 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|336476006|ref|YP_004615147.1| - 0.015 15.6 0.8 0.026 14.8 0.8 1.5 1 1 0 1 1 1 0 Invasin, domain 3 bMG3 PF11974.8 gi|336476006|ref|YP_004615147.1| - 0.11 12.5 0.1 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain GATase PF00117.28 gi|336476007|ref|YP_004615148.1| - 3e-22 79.3 0.0 3.7e-22 79.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|336476007|ref|YP_004615148.1| - 1.5e-07 31.5 0.0 3e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|336476007|ref|YP_004615148.1| - 4.1e-06 26.5 0.7 1.4e-05 24.8 0.7 1.8 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|336476007|ref|YP_004615148.1| - 1.9e-05 24.5 0.2 4.5e-05 23.3 0.2 1.8 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|336476007|ref|YP_004615148.1| - 5.5e-05 23.0 0.0 8.5e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_5 PF13507.6 gi|336476007|ref|YP_004615148.1| - 0.073 12.2 0.0 4.1 6.4 0.0 2.3 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain AIRS_C PF02769.22 gi|336476008|ref|YP_004615149.1| - 1.9e-21 76.8 0.5 3.7e-21 75.9 0.5 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|336476008|ref|YP_004615149.1| - 5e-08 33.5 1.1 1.4e-07 32.0 1.1 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain ocr PF08684.10 gi|336476008|ref|YP_004615149.1| - 0.049 14.1 1.2 0.71 10.4 0.0 3.2 3 1 1 4 4 4 0 DNA mimic ocr NfeD PF01957.18 gi|336476009|ref|YP_004615150.1| - 4.6e-16 59.0 1.5 1.7e-15 57.2 1.5 2.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|336476009|ref|YP_004615150.1| - 0.00016 21.6 0.1 0.00045 20.1 0.1 1.7 1 1 0 1 1 1 1 Clp protease PRIMA1 PF16101.5 gi|336476009|ref|YP_004615150.1| - 0.039 14.0 0.1 0.087 12.9 0.1 1.5 1 0 0 1 1 1 0 Proline-rich membrane anchor 1 CD34_antigen PF06365.12 gi|336476009|ref|YP_004615150.1| - 0.22 11.1 0.4 0.56 9.8 0.0 1.8 2 0 0 2 2 2 0 CD34/Podocalyxin family TMEM154 PF15102.6 gi|336476009|ref|YP_004615150.1| - 0.43 10.5 3.6 0.48 10.3 0.8 2.3 2 0 0 2 2 2 0 TMEM154 protein family DUF2619 PF10942.8 gi|336476009|ref|YP_004615150.1| - 1.7 8.7 10.6 7.5 6.7 0.9 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2619) Band_7 PF01145.25 gi|336476010|ref|YP_004615151.1| - 2e-35 122.4 2.8 2.9e-35 121.9 2.8 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|336476010|ref|YP_004615151.1| - 0.00016 21.4 0.2 0.00034 20.4 0.1 1.6 2 0 0 2 2 2 1 SPFH domain-Band 7 family DnaJ_CXXCXGXG PF00684.19 gi|336476011|ref|YP_004615152.1| - 2.6e-09 37.3 15.5 2.6e-09 37.3 15.5 2.3 2 0 0 2 2 2 1 DnaJ central domain tRNA_anti-codon PF01336.25 gi|336476011|ref|YP_004615152.1| - 1.4e-06 28.2 0.1 3.1e-06 27.1 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|336476011|ref|YP_004615152.1| - 1.9e-06 28.1 2.4 2e-06 28.0 0.3 2.3 2 1 0 2 2 2 1 S1 RNA binding domain DHH PF01368.20 gi|336476011|ref|YP_004615152.1| - 1.4e-05 25.2 0.3 2.8e-05 24.3 0.3 1.4 1 0 0 1 1 1 1 DHH family S1_2 PF13509.6 gi|336476011|ref|YP_004615152.1| - 0.0028 17.7 0.0 0.0067 16.5 0.0 1.7 1 0 0 1 1 1 1 S1 domain tRNA_anti_2 PF13742.6 gi|336476011|ref|YP_004615152.1| - 0.059 13.6 0.0 0.17 12.1 0.0 1.8 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain PolC_DP2 PF03833.13 gi|336476011|ref|YP_004615152.1| - 2.7 5.7 7.0 0.15 9.9 1.0 1.6 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 zf-CHY PF05495.12 gi|336476011|ref|YP_004615152.1| - 6.6 7.3 13.6 3.4 8.2 8.7 2.8 1 1 1 2 2 2 0 CHY zinc finger Pribosyltran PF00156.27 gi|336476012|ref|YP_004615153.1| - 2.1e-19 69.6 0.4 3.3e-19 69.0 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_11 PF08279.12 gi|336476012|ref|YP_004615153.1| - 0.0005 20.0 0.4 0.34 10.9 0.0 2.6 2 0 0 2 2 2 2 HTH domain HTH_7 PF02796.15 gi|336476012|ref|YP_004615153.1| - 0.0009 19.3 1.1 0.0044 17.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase UPRTase PF14681.6 gi|336476012|ref|YP_004615153.1| - 0.0012 18.3 0.1 0.0016 17.9 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|336476012|ref|YP_004615153.1| - 0.029 13.9 0.0 0.057 12.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase HTH_Crp_2 PF13545.6 gi|336476012|ref|YP_004615153.1| - 0.036 14.0 0.4 2.6 8.1 0.0 3.1 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|336476012|ref|YP_004615153.1| - 0.045 13.6 0.0 0.56 10.1 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|336476012|ref|YP_004615153.1| - 0.098 12.2 0.5 0.25 10.9 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Nucleo_LEF-12 PF06256.11 gi|336476012|ref|YP_004615153.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus LEF-12 protein PIN_6 PF17146.4 gi|336476013|ref|YP_004615154.1| - 1.6e-13 50.9 0.4 2.8e-13 50.2 0.2 1.4 2 0 0 2 2 2 1 PIN domain of ribonuclease zinc-ribbons_6 PF07191.12 gi|336476013|ref|YP_004615154.1| - 0.0078 16.2 0.1 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 zinc-ribbons Prok-RING_1 PF14446.6 gi|336476013|ref|YP_004615154.1| - 0.0095 15.8 1.8 0.017 15.1 1.8 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DNA_ligase_ZBD PF03119.16 gi|336476013|ref|YP_004615154.1| - 0.039 14.0 0.4 0.093 12.8 0.4 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF4411 PF14367.6 gi|336476013|ref|YP_004615154.1| - 0.1 12.5 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) Ribosomal_L29 PF00831.23 gi|336476013|ref|YP_004615154.1| - 0.17 11.9 0.6 0.31 11.0 0.0 1.8 2 0 0 2 2 2 0 Ribosomal L29 protein HypA PF01155.19 gi|336476013|ref|YP_004615154.1| - 0.19 11.8 1.3 0.6 10.1 1.3 1.8 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|336476013|ref|YP_004615154.1| - 0.2 11.8 3.0 0.72 10.0 3.0 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF2072 PF09845.9 gi|336476013|ref|YP_004615154.1| - 3.1 8.0 4.9 2.7 8.3 2.6 1.9 2 0 0 2 2 2 0 Zn-ribbon containing protein Claudin_3 PF06653.11 gi|336476015|ref|YP_004615156.1| - 0.046 13.7 6.3 0.058 13.3 6.3 1.2 1 0 0 1 1 1 0 Tight junction protein, Claudin-like DUF2368 PF10166.9 gi|336476015|ref|YP_004615156.1| - 0.17 11.5 0.8 0.2 11.2 0.8 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2368) CcmH PF03918.14 gi|336476015|ref|YP_004615156.1| - 0.71 9.2 4.9 5.1 6.4 0.9 2.1 1 1 1 2 2 2 0 Cytochrome C biogenesis protein NAD_synthase PF02540.17 gi|336476016|ref|YP_004615157.1| - 2.5e-80 269.1 0.0 2.9e-80 268.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|336476016|ref|YP_004615157.1| - 1.6e-05 23.9 0.0 0.00025 20.0 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|336476016|ref|YP_004615157.1| - 0.0036 16.8 0.0 0.0055 16.2 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC DUF1743 PF08489.11 gi|336476017|ref|YP_004615158.1| - 6.2e-43 145.6 0.0 2.6e-42 143.6 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) Rep_fac-A_C PF08646.10 gi|336476017|ref|YP_004615158.1| - 0.029 14.1 2.1 0.062 13.1 2.1 1.4 1 0 0 1 1 1 0 Replication factor-A C terminal domain zinc-ribbons_6 PF07191.12 gi|336476017|ref|YP_004615158.1| - 0.037 14.0 3.9 0.1 12.6 3.9 1.8 1 0 0 1 1 1 0 zinc-ribbons tRNA_anti-codon PF01336.25 gi|336476017|ref|YP_004615158.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Zn-ribbon_8 PF09723.10 gi|336476017|ref|YP_004615158.1| - 0.19 11.8 2.5 14 5.9 0.1 2.7 2 0 0 2 2 2 0 Zinc ribbon domain C1_1 PF00130.22 gi|336476017|ref|YP_004615158.1| - 0.2 11.6 2.0 0.41 10.6 2.0 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.7 gi|336476017|ref|YP_004615158.1| - 0.22 11.5 5.1 0.52 10.3 5.1 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain C1_2 PF03107.16 gi|336476017|ref|YP_004615158.1| - 0.27 11.6 3.3 0.97 9.8 3.3 2.0 1 1 0 1 1 1 0 C1 domain HTH_3 PF01381.22 gi|336476018|ref|YP_004615159.1| - 1.4e-10 41.1 0.9 3.3e-10 39.9 0.4 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|336476018|ref|YP_004615159.1| - 2e-08 34.4 0.2 3.3e-08 33.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|336476018|ref|YP_004615159.1| - 6.8e-08 32.4 0.0 2.3e-07 30.7 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|336476018|ref|YP_004615159.1| - 0.00053 19.9 0.1 0.0027 17.6 0.1 2.2 2 0 0 2 2 2 1 HTH domain YdaS_antitoxin PF15943.5 gi|336476018|ref|YP_004615159.1| - 0.0027 17.5 0.1 0.012 15.4 0.0 2.1 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_38 PF13936.6 gi|336476018|ref|YP_004615159.1| - 0.069 12.9 0.2 0.14 11.9 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_25 PF13413.6 gi|336476018|ref|YP_004615159.1| - 0.096 12.6 0.2 0.26 11.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain GFRP PF06399.13 gi|336476018|ref|YP_004615159.1| - 0.18 11.7 0.0 0.82 9.6 0.0 2.1 2 0 0 2 2 2 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) Formyl_trans_N PF00551.19 gi|336476019|ref|YP_004615160.1| - 4.1e-55 186.3 0.0 4.8e-55 186.1 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase ubiquitin PF00240.23 gi|336476019|ref|YP_004615160.1| - 0.021 14.6 0.1 0.096 12.4 0.1 1.9 2 0 0 2 2 2 0 Ubiquitin family SHMT PF00464.19 gi|336476020|ref|YP_004615161.1| - 3.9e-168 559.2 0.3 4.5e-168 559.0 0.3 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|336476020|ref|YP_004615161.1| - 4.6e-08 32.6 0.0 6.3e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.20 gi|336476020|ref|YP_004615161.1| - 0.00014 20.7 0.0 0.00022 20.1 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Aminotran_5 PF00266.19 gi|336476020|ref|YP_004615161.1| - 0.00042 19.4 0.0 0.0006 18.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V THF_DHG_CYH_C PF02882.19 gi|336476021|ref|YP_004615162.1| - 2.7e-64 215.3 1.3 3.6e-64 214.9 1.3 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|336476021|ref|YP_004615162.1| - 7.9e-38 129.3 0.4 1.2e-37 128.7 0.4 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AdoHcyase_NAD PF00670.21 gi|336476021|ref|YP_004615162.1| - 0.00053 20.1 1.3 0.035 14.2 1.3 2.3 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PTS_IIB PF02302.17 gi|336476021|ref|YP_004615162.1| - 0.037 14.7 0.5 0.084 13.6 0.1 1.9 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Shikimate_DH PF01488.20 gi|336476021|ref|YP_004615162.1| - 0.038 14.0 0.4 0.41 10.7 0.1 2.3 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase adh_short PF00106.25 gi|336476021|ref|YP_004615162.1| - 0.094 12.2 0.1 0.18 11.3 0.1 1.5 1 0 0 1 1 1 0 short chain dehydrogenase Pterin_bind PF00809.22 gi|336476022|ref|YP_004615163.1| - 3.9e-58 197.0 1.7 5.2e-58 196.6 1.7 1.2 1 0 0 1 1 1 1 Pterin binding enzyme MTHFR_C PF12225.8 gi|336476023|ref|YP_004615164.1| - 1.5e-31 107.9 5.1 1.5e-31 107.9 5.1 1.6 2 0 0 2 2 2 1 Methylene-tetrahydrofolate reductase C terminal MTHFR PF02219.17 gi|336476024|ref|YP_004615165.1| - 3.3e-37 128.4 0.0 3.8e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase ThiC_Rad_SAM PF01964.18 gi|336476025|ref|YP_004615166.1| - 1.6e-145 485.1 0.0 1.8e-145 484.9 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family F420_ligase PF01996.16 gi|336476026|ref|YP_004615167.1| - 1.2e-57 195.1 0.3 1.4e-57 194.9 0.3 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase L_biotic_typeA PF04604.13 gi|336476026|ref|YP_004615167.1| - 0.057 13.3 0.2 0.12 12.3 0.2 1.4 1 0 0 1 1 1 0 Type-A lantibiotic Peptidase_C8 PF03569.13 gi|336476026|ref|YP_004615167.1| - 0.18 11.3 0.1 0.28 10.7 0.1 1.2 1 0 0 1 1 1 0 Peptidase family C8 Thioredoxin PF00085.20 gi|336476028|ref|YP_004615169.1| - 1.7e-23 82.6 0.0 1.8e-23 82.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|336476028|ref|YP_004615169.1| - 2.4e-09 37.6 0.1 8.6e-09 35.8 0.1 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|336476028|ref|YP_004615169.1| - 3.8e-06 27.2 0.0 0.00012 22.4 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin-like Glutaredoxin PF00462.24 gi|336476028|ref|YP_004615169.1| - 4.4e-06 26.8 0.1 8.2e-06 25.9 0.1 1.5 1 1 0 1 1 1 1 Glutaredoxin Redoxin PF08534.10 gi|336476028|ref|YP_004615169.1| - 1.5e-05 24.8 0.2 0.003 17.3 0.0 2.0 1 1 1 2 2 2 2 Redoxin TraF PF13728.6 gi|336476028|ref|YP_004615169.1| - 0.00015 21.7 0.0 0.00017 21.5 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|336476028|ref|YP_004615169.1| - 0.00031 20.7 0.1 0.00037 20.5 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.6 gi|336476028|ref|YP_004615169.1| - 0.00059 20.0 0.0 0.00082 19.5 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|336476028|ref|YP_004615169.1| - 0.00067 19.4 0.0 0.00082 19.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.14 gi|336476028|ref|YP_004615169.1| - 0.00094 19.5 0.0 0.0011 19.3 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) KaiB PF07689.12 gi|336476028|ref|YP_004615169.1| - 0.0012 18.5 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 KaiB domain AhpC-TSA PF00578.21 gi|336476028|ref|YP_004615169.1| - 0.0032 17.4 0.1 0.012 15.5 0.0 1.8 1 1 1 2 2 2 1 AhpC/TSA family HyaE PF07449.11 gi|336476028|ref|YP_004615169.1| - 0.013 15.4 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DUF4788 PF16032.5 gi|336476028|ref|YP_004615169.1| - 0.071 12.1 0.0 0.077 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4788) Thioredoxin_5 PF13743.6 gi|336476028|ref|YP_004615169.1| - 0.21 11.3 0.1 5.5 6.6 0.1 1.9 1 1 1 2 2 2 0 Thioredoxin Lactamase_B_2 PF12706.7 gi|336476029|ref|YP_004615170.1| - 0.0003 20.3 0.1 0.0019 17.8 0.1 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|336476029|ref|YP_004615170.1| - 0.058 13.3 0.5 0.21 11.5 0.2 2.0 2 1 0 2 2 2 0 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336476029|ref|YP_004615170.1| - 2.6 8.0 5.6 15 5.5 4.9 2.5 1 1 1 2 2 2 0 Metallo-beta-lactamase superfamily FUSC_2 PF13515.6 gi|336476030|ref|YP_004615171.1| - 0.00076 19.6 0.8 0.0011 19.1 0.8 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein-like Arnt_C PF18583.1 gi|336476030|ref|YP_004615171.1| - 0.004 16.7 0.1 0.0061 16.2 0.1 1.2 1 0 0 1 1 1 1 Aminoarabinose transferase C-terminal domain DUF5336 PF17270.2 gi|336476030|ref|YP_004615171.1| - 0.023 14.4 1.3 0.033 13.8 1.3 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5336) PrgI PF12666.7 gi|336476030|ref|YP_004615171.1| - 0.55 11.0 5.6 0.74 10.6 5.6 1.4 1 1 0 1 1 1 0 PrgI family protein DUF4407 PF14362.6 gi|336476030|ref|YP_004615171.1| - 0.79 9.0 5.6 0.66 9.3 4.9 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Phage_holin_3_6 PF07332.11 gi|336476030|ref|YP_004615171.1| - 2 8.5 6.8 3.6 7.7 6.8 1.5 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2613 PF11021.8 gi|336476030|ref|YP_004615171.1| - 7.5 6.8 8.5 0.93 9.7 3.9 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) ABC_tran PF00005.27 gi|336476031|ref|YP_004615172.1| - 4.2e-40 137.4 0.0 2.1e-21 76.9 0.0 3.0 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|336476031|ref|YP_004615172.1| - 1.3e-14 54.2 7.0 2.2e-05 24.0 0.1 4.2 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|336476031|ref|YP_004615172.1| - 1.3e-12 47.4 2.8 2.4e-12 46.4 2.8 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|336476031|ref|YP_004615172.1| - 1.8e-11 44.4 5.9 0.071 12.9 0.1 4.2 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|336476031|ref|YP_004615172.1| - 2.6e-07 30.2 5.0 2.6e-07 30.2 5.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Rad17 PF03215.15 gi|336476031|ref|YP_004615172.1| - 1.6e-06 28.2 0.0 0.053 13.4 0.0 2.4 2 0 0 2 2 2 2 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|336476031|ref|YP_004615172.1| - 2e-06 27.8 0.0 0.0039 17.1 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_16 PF13191.6 gi|336476031|ref|YP_004615172.1| - 9.9e-06 26.0 0.1 0.02 15.3 0.0 2.8 2 1 1 3 3 3 2 AAA ATPase domain AAA_23 PF13476.6 gi|336476031|ref|YP_004615172.1| - 1.9e-05 25.2 0.3 0.16 12.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|336476031|ref|YP_004615172.1| - 3.2e-05 23.8 0.6 1.2 8.8 0.0 3.3 3 1 0 3 3 3 1 AAA ATPase domain RNA_helicase PF00910.22 gi|336476031|ref|YP_004615172.1| - 4.3e-05 23.9 0.0 0.35 11.3 0.0 2.8 3 0 0 3 3 2 2 RNA helicase AAA_29 PF13555.6 gi|336476031|ref|YP_004615172.1| - 5.2e-05 22.9 0.8 0.26 11.0 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA PF00004.29 gi|336476031|ref|YP_004615172.1| - 8.3e-05 23.0 0.0 0.099 13.1 0.0 2.8 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|336476031|ref|YP_004615172.1| - 0.00019 21.7 0.0 0.031 14.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|336476031|ref|YP_004615172.1| - 0.00079 19.5 0.2 5.8 7.0 0.0 3.5 3 0 0 3 3 3 0 AAA domain Fer4_21 PF14697.6 gi|336476031|ref|YP_004615172.1| - 0.00086 19.4 6.7 0.0015 18.6 6.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|336476031|ref|YP_004615172.1| - 0.001 18.9 0.2 0.92 9.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain Fer4_7 PF12838.7 gi|336476031|ref|YP_004615172.1| - 0.0012 19.3 8.5 0.0029 18.1 8.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF87 PF01935.17 gi|336476031|ref|YP_004615172.1| - 0.0013 18.9 0.1 3.3 7.7 0.1 3.0 3 0 0 3 3 3 2 Helicase HerA, central domain Fer4_10 PF13237.6 gi|336476031|ref|YP_004615172.1| - 0.0016 18.6 10.0 0.0047 17.0 1.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476031|ref|YP_004615172.1| - 0.0017 18.3 1.6 0.0017 18.3 1.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336476031|ref|YP_004615172.1| - 0.0017 18.4 8.1 0.0032 17.6 8.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336476031|ref|YP_004615172.1| - 0.0045 17.0 4.1 0.0045 17.0 4.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain NACHT PF05729.12 gi|336476031|ref|YP_004615172.1| - 0.011 15.7 0.3 1 9.3 0.0 2.4 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.23 gi|336476031|ref|YP_004615172.1| - 0.013 15.6 0.6 1.2 9.3 0.1 3.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|336476031|ref|YP_004615172.1| - 0.014 15.6 0.0 15 5.9 0.0 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|336476031|ref|YP_004615172.1| - 0.019 15.1 0.2 1.2 9.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|336476031|ref|YP_004615172.1| - 0.021 14.6 0.6 7.2 6.3 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|336476031|ref|YP_004615172.1| - 0.024 15.2 0.0 5 7.7 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|336476031|ref|YP_004615172.1| - 0.034 13.7 1.4 4.9 6.7 0.0 3.7 4 0 0 4 4 4 0 AAA domain AAA_5 PF07728.14 gi|336476031|ref|YP_004615172.1| - 0.041 13.9 0.2 11 6.0 0.0 3.3 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) MeaB PF03308.16 gi|336476031|ref|YP_004615172.1| - 0.044 12.8 0.8 2.8 6.8 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 gi|336476031|ref|YP_004615172.1| - 0.048 12.9 0.0 0.59 9.3 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain Fer4_16 PF13484.6 gi|336476031|ref|YP_004615172.1| - 0.072 14.0 0.3 0.072 14.0 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain dNK PF01712.19 gi|336476031|ref|YP_004615172.1| - 0.1 12.5 0.1 3.7 7.4 0.0 2.5 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA_28 PF13521.6 gi|336476031|ref|YP_004615172.1| - 0.12 12.6 0.1 20 5.4 0.0 2.9 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|336476031|ref|YP_004615172.1| - 0.15 12.0 1.7 6.5 6.6 0.0 3.0 3 0 0 3 3 3 0 NTPase CLP1_P PF16575.5 gi|336476031|ref|YP_004615172.1| - 0.18 11.6 0.0 7.2 6.4 0.0 2.5 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Fer4_8 PF13183.6 gi|336476031|ref|YP_004615172.1| - 0.75 10.3 5.0 0.29 11.6 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336476031|ref|YP_004615172.1| - 1.3 10.0 6.2 0.38 11.6 3.0 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476031|ref|YP_004615172.1| - 9.1 7.1 13.9 1.2 9.8 3.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Cyt-b5 PF00173.28 gi|336476032|ref|YP_004615173.1| - 1.9e-08 34.3 0.2 2.5e-08 33.9 0.2 1.4 1 1 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain MS_channel PF00924.18 gi|336476033|ref|YP_004615174.1| - 4.6e-48 163.5 0.4 4.6e-48 163.5 0.4 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Iso_dh PF00180.20 gi|336476034|ref|YP_004615175.1| - 2.7e-95 319.5 0.0 3.1e-95 319.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 gi|336476035|ref|YP_004615176.1| - 7.6e-20 71.6 0.0 1.5e-19 70.6 0.0 1.6 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|336476035|ref|YP_004615176.1| - 0.0084 15.8 0.2 0.081 12.6 0.2 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Peptidase_M29 PF02073.15 gi|336476036|ref|YP_004615177.1| - 2.5e-10 39.7 0.0 1.3e-07 30.8 0.0 2.2 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) DUF87 PF01935.17 gi|336476037|ref|YP_004615178.1| - 2.4e-11 44.2 0.0 3.9e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|336476037|ref|YP_004615178.1| - 8.1e-06 24.7 0.0 2.3e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 gi|336476037|ref|YP_004615178.1| - 0.00016 21.9 0.0 0.23 11.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 gi|336476037|ref|YP_004615178.1| - 0.0002 21.8 0.1 0.015 15.7 0.1 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zot PF05707.12 gi|336476037|ref|YP_004615178.1| - 0.0005 19.8 0.0 0.0013 18.4 0.0 1.8 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.18 gi|336476037|ref|YP_004615178.1| - 0.0027 17.1 0.1 0.34 10.2 0.1 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family TruD PF01142.18 gi|336476037|ref|YP_004615178.1| - 0.15 10.8 0.0 0.77 8.5 0.0 1.9 1 1 1 2 2 2 0 tRNA pseudouridine synthase D (TruD) MFS_1 PF07690.16 gi|336476038|ref|YP_004615179.1| - 1.2e-54 185.6 60.3 7.7e-38 130.3 29.9 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|336476038|ref|YP_004615179.1| - 1.8e-15 56.8 38.1 1.6e-11 43.7 13.9 3.2 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_1_like PF12832.7 gi|336476038|ref|YP_004615179.1| - 3e-05 23.1 32.3 0.0011 17.9 13.2 2.3 1 1 1 2 2 2 2 MFS_1 like family TRI12 PF06609.13 gi|336476038|ref|YP_004615179.1| - 0.00012 20.6 8.9 0.00012 20.6 8.9 2.1 1 1 1 2 2 2 2 Fungal trichothecene efflux pump (TRI12) Abhydrolase_6 PF12697.7 gi|336476038|ref|YP_004615179.1| - 0.28 11.7 3.1 9.8 6.7 0.3 2.3 2 0 0 2 2 2 0 Alpha/beta hydrolase family OATP PF03137.20 gi|336476038|ref|YP_004615179.1| - 0.7 8.1 28.7 0.012 14.0 4.9 3.9 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Pyr_redox_2 PF07992.14 gi|336476039|ref|YP_004615180.1| - 9.6e-15 54.6 0.4 1.2e-05 24.7 0.0 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|336476039|ref|YP_004615180.1| - 3.8e-14 52.6 0.3 3.3e-05 23.2 0.1 3.1 3 0 0 3 3 3 3 FAD binding domain GIDA PF01134.22 gi|336476039|ref|YP_004615180.1| - 8.8e-13 48.1 0.3 4.3e-05 22.8 0.0 3.1 3 0 0 3 3 3 3 Glucose inhibited division protein A HI0933_like PF03486.14 gi|336476039|ref|YP_004615180.1| - 5.9e-10 38.4 0.1 1.6e-06 27.1 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|336476039|ref|YP_004615180.1| - 1e-05 25.6 0.0 0.0015 18.7 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|336476039|ref|YP_004615180.1| - 2.3e-05 24.9 0.1 0.12 12.9 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|336476039|ref|YP_004615180.1| - 0.00011 21.6 0.1 0.00022 20.6 0.0 1.5 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|336476039|ref|YP_004615180.1| - 0.00044 19.9 0.0 0.14 11.7 0.0 2.5 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|336476039|ref|YP_004615180.1| - 0.0013 18.1 0.1 0.0026 17.1 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|336476039|ref|YP_004615180.1| - 0.0032 16.6 0.1 0.0054 15.8 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.17 gi|336476039|ref|YP_004615180.1| - 0.0044 16.3 0.1 0.068 12.4 0.0 2.2 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|336476039|ref|YP_004615180.1| - 0.0051 16.2 0.2 0.1 12.0 0.3 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|336476039|ref|YP_004615180.1| - 0.032 13.5 0.0 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain TMP-TENI PF02581.17 gi|336476039|ref|YP_004615180.1| - 0.042 13.2 0.0 0.073 12.4 0.0 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase DUF1297 PF06973.12 gi|336476040|ref|YP_004615181.1| - 2.5e-57 193.4 0.2 3.5e-57 193.0 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|336476040|ref|YP_004615181.1| - 1e-45 154.7 0.0 2.7e-45 153.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|336476040|ref|YP_004615181.1| - 0.0011 19.1 0.0 0.0051 16.9 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|336476040|ref|YP_004615181.1| - 0.085 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain HTH_20 PF12840.7 gi|336476041|ref|YP_004615182.1| - 1.4e-10 41.0 0.0 2.1e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF742 PF05331.11 gi|336476041|ref|YP_004615182.1| - 2.2e-06 27.5 0.0 3e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_IclR PF09339.10 gi|336476041|ref|YP_004615182.1| - 1.2e-05 25.0 0.0 2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|336476041|ref|YP_004615182.1| - 2.2e-05 24.2 0.0 3.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|336476041|ref|YP_004615182.1| - 0.00022 20.7 0.2 0.0004 19.9 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|336476041|ref|YP_004615182.1| - 0.00035 20.4 0.1 0.00062 19.6 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|336476041|ref|YP_004615182.1| - 0.0016 18.4 0.7 0.0084 16.1 0.2 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix Dimerisation2 PF16864.5 gi|336476041|ref|YP_004615182.1| - 0.0021 18.0 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain DUF4423 PF14394.6 gi|336476041|ref|YP_004615182.1| - 0.0035 17.1 0.3 0.0071 16.1 0.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|336476041|ref|YP_004615182.1| - 0.048 14.2 0.1 0.086 13.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TBPIP PF07106.13 gi|336476041|ref|YP_004615182.1| - 0.12 12.4 0.2 0.31 11.0 0.2 1.8 1 1 1 2 2 2 0 TBPIP/Hop2 winged helix domain PseudoU_synth_1 PF01416.20 gi|336476042|ref|YP_004615183.1| - 2.7e-28 98.6 0.0 3.6e-24 85.3 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase UPF0020 PF01170.18 gi|336476043|ref|YP_004615184.1| - 3.1e-33 115.1 0.1 1.9e-32 112.6 0.0 2.2 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|336476043|ref|YP_004615184.1| - 8.8e-11 41.8 0.0 3.1e-10 40.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336476043|ref|YP_004615184.1| - 1.3e-10 41.8 0.0 3.5e-10 40.4 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain THUMP PF02926.17 gi|336476043|ref|YP_004615184.1| - 6.7e-09 36.0 0.0 1.2e-08 35.2 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_11 PF08241.12 gi|336476043|ref|YP_004615184.1| - 2.6e-08 34.4 0.0 6.6e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|336476043|ref|YP_004615184.1| - 2.8e-08 33.8 0.0 3.1e-05 23.8 0.0 2.4 2 0 0 2 2 2 2 DNA methylase Cons_hypoth95 PF03602.15 gi|336476043|ref|YP_004615184.1| - 1.3e-06 28.2 0.0 1.9e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|336476043|ref|YP_004615184.1| - 3.1e-06 26.8 0.0 4.9e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain AviRa PF11599.8 gi|336476043|ref|YP_004615184.1| - 1.6e-05 24.5 0.0 0.044 13.3 0.0 2.4 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Methyltransf_15 PF09445.10 gi|336476043|ref|YP_004615184.1| - 4.6e-05 23.1 0.0 9.6e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.18 gi|336476043|ref|YP_004615184.1| - 5.5e-05 22.6 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.16 gi|336476043|ref|YP_004615184.1| - 8.2e-05 22.0 0.0 0.00017 21.0 0.0 1.5 1 0 0 1 1 1 1 N-6 DNA Methylase MethyltransfD12 PF02086.15 gi|336476043|ref|YP_004615184.1| - 0.017 14.8 0.1 0.24 11.0 0.0 2.4 2 1 0 3 3 3 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_8 PF05148.15 gi|336476043|ref|YP_004615184.1| - 0.019 14.8 0.0 0.049 13.5 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase DUF4478 PF14793.6 gi|336476043|ref|YP_004615184.1| - 0.052 13.4 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases N6-adenineMlase PF10237.9 gi|336476043|ref|YP_004615184.1| - 0.062 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase Methyltransf_23 PF13489.6 gi|336476043|ref|YP_004615184.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF1805 PF08827.11 gi|336476044|ref|YP_004615185.1| - 4.5e-24 84.6 0.5 6.1e-24 84.1 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) Peptidase_M24 PF00557.24 gi|336476046|ref|YP_004615187.1| - 1.9e-38 132.2 0.0 2.3e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 ATP-cone PF03477.16 gi|336476046|ref|YP_004615187.1| - 0.13 12.9 0.1 4.8 7.8 0.1 2.6 3 0 0 3 3 3 0 ATP cone domain Peptidase_M24 PF00557.24 gi|336476047|ref|YP_004615188.1| - 3.1e-46 157.7 0.8 3.9e-46 157.4 0.8 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 AdoMet_Synthase PF01941.19 gi|336476049|ref|YP_004615190.1| - 1.1e-177 590.8 1.6 1.2e-177 590.6 1.6 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) ERp29 PF07749.12 gi|336476049|ref|YP_004615190.1| - 0.14 13.1 0.0 3 8.8 0.1 2.3 2 0 0 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain HisG PF01634.18 gi|336476050|ref|YP_004615191.1| - 8.5e-50 168.8 0.1 1.3e-49 168.3 0.1 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|336476050|ref|YP_004615191.1| - 1.4e-25 89.2 0.3 3.5e-25 87.9 0.3 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|336476050|ref|YP_004615191.1| - 0.016 15.2 0.0 1.1 9.2 0.0 2.3 1 1 1 2 2 2 0 NMT1/THI5 like TcpF PF06340.11 gi|336476050|ref|YP_004615191.1| - 0.042 12.7 0.0 0.06 12.2 0.0 1.2 1 0 0 1 1 1 0 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F His_biosynth PF00977.21 gi|336476051|ref|YP_004615192.1| - 1.8e-74 250.1 1.1 2e-74 249.9 1.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|336476051|ref|YP_004615192.1| - 1.4e-08 34.2 0.0 0.00087 18.5 0.0 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|336476051|ref|YP_004615192.1| - 4e-08 32.8 0.9 5.5e-07 29.1 0.3 2.3 3 0 0 3 3 3 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|336476051|ref|YP_004615192.1| - 5.3e-06 26.1 0.3 1.4e-05 24.7 0.2 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.25 gi|336476051|ref|YP_004615192.1| - 8.1e-06 25.1 0.6 0.00039 19.5 0.2 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NanE PF04131.14 gi|336476051|ref|YP_004615192.1| - 2.5e-05 23.5 0.1 0.049 12.8 0.0 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.17 gi|336476051|ref|YP_004615192.1| - 0.00021 20.7 0.4 0.00037 19.9 0.1 1.5 2 0 0 2 2 2 1 Thiamine monophosphate synthase ThiG PF05690.14 gi|336476051|ref|YP_004615192.1| - 0.00025 20.4 0.6 0.38 10.0 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|336476051|ref|YP_004615192.1| - 0.00033 19.9 0.1 0.0012 18.1 0.1 1.8 3 0 0 3 3 3 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|336476051|ref|YP_004615192.1| - 0.00054 19.1 1.2 0.022 13.8 0.1 2.1 2 0 0 2 2 2 1 FMN-dependent dehydrogenase DUF561 PF04481.12 gi|336476051|ref|YP_004615192.1| - 0.0011 18.2 0.4 0.0018 17.5 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF561) PcrB PF01884.17 gi|336476051|ref|YP_004615192.1| - 0.0022 17.5 0.7 0.13 11.7 0.0 2.1 2 0 0 2 2 2 1 PcrB family G3P_antiterm PF04309.12 gi|336476051|ref|YP_004615192.1| - 0.0068 15.8 0.7 0.082 12.3 0.3 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|336476051|ref|YP_004615192.1| - 0.036 12.9 1.7 0.08 11.8 0.5 1.9 2 0 0 2 2 2 0 Tryptophan synthase alpha chain IGPD PF00475.18 gi|336476052|ref|YP_004615193.1| - 1.5e-63 213.4 1.1 1.9e-63 213.1 1.1 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase MutS_V PF00488.21 gi|336476053|ref|YP_004615194.1| - 3.9e-10 40.1 0.0 1e-09 38.7 0.0 1.7 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|336476053|ref|YP_004615194.1| - 2.6e-07 31.1 0.0 4.2e-06 27.3 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_21 PF13304.6 gi|336476053|ref|YP_004615194.1| - 7e-05 22.8 4.4 0.17 11.6 0.0 4.2 4 1 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system HHH_2 PF12826.7 gi|336476053|ref|YP_004615194.1| - 0.0036 17.4 0.1 0.013 15.6 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif AAA PF00004.29 gi|336476053|ref|YP_004615194.1| - 0.0047 17.3 0.3 0.018 15.4 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) 5_3_exonuc PF01367.20 gi|336476053|ref|YP_004615194.1| - 0.0098 16.5 0.0 0.18 12.4 0.0 3.0 1 1 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.8 gi|336476053|ref|YP_004615194.1| - 0.02 15.2 0.0 0.11 12.8 0.0 2.3 2 0 0 2 2 2 0 IMS family HHH motif HHH PF00633.23 gi|336476053|ref|YP_004615194.1| - 0.024 14.5 0.0 0.094 12.6 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif AAA_23 PF13476.6 gi|336476053|ref|YP_004615194.1| - 0.8 10.2 2.6 1.8 9.0 0.0 2.5 3 0 0 3 3 3 0 AAA domain DUF4130 PF13566.6 gi|336476054|ref|YP_004615195.1| - 8.1e-05 22.7 0.0 0.0001 22.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 NTP_transf_6 PF06042.11 gi|336476055|ref|YP_004615196.1| - 0.11 12.4 0.1 0.12 12.3 0.1 1.0 1 0 0 1 1 1 0 Nucleotidyltransferase Radical_SAM PF04055.21 gi|336476056|ref|YP_004615197.1| - 2.6e-08 34.4 0.1 5.3e-08 33.4 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|336476056|ref|YP_004615197.1| - 1.7e-05 25.0 0.0 3.6e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|336476056|ref|YP_004615197.1| - 0.0018 18.0 0.0 0.0048 16.7 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|336476056|ref|YP_004615197.1| - 0.0022 18.6 0.1 0.0061 17.1 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain Fer4_12 PF13353.6 gi|336476056|ref|YP_004615197.1| - 0.013 15.8 0.0 0.02 15.1 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain LAGLIDADG_WhiA PF14527.6 gi|336476056|ref|YP_004615197.1| - 0.022 14.8 0.0 0.39 10.8 0.0 2.6 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain HHH_2 PF12826.7 gi|336476056|ref|YP_004615197.1| - 0.18 12.0 0.0 0.33 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif HTH_20 PF12840.7 gi|336476057|ref|YP_004615198.1| - 5.4e-11 42.4 0.0 1.4e-10 41.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336476057|ref|YP_004615198.1| - 4.1e-10 39.4 0.4 7.7e-10 38.5 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|336476057|ref|YP_004615198.1| - 0.00015 21.2 0.1 0.00032 20.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336476057|ref|YP_004615198.1| - 0.00018 21.3 0.0 0.00033 20.5 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|336476057|ref|YP_004615198.1| - 0.00068 19.5 0.1 0.0012 18.7 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|336476057|ref|YP_004615198.1| - 0.0014 18.5 0.1 0.037 13.9 0.1 2.2 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|336476057|ref|YP_004615198.1| - 0.0097 16.2 0.2 0.048 14.0 0.1 2.0 2 1 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|336476057|ref|YP_004615198.1| - 0.014 15.3 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_1 PF00126.27 gi|336476057|ref|YP_004615198.1| - 0.1 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Pilin_N PF07790.11 gi|336476058|ref|YP_004615199.1| - 1.1e-15 58.3 1.2 1.8e-15 57.6 1.2 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal ATP-synt_ab_N PF02874.23 gi|336476058|ref|YP_004615199.1| - 0.22 12.1 2.1 0.44 11.1 0.0 2.4 2 1 0 2 2 2 0 ATP synthase alpha/beta family, beta-barrel domain Glug PF07581.12 gi|336476059|ref|YP_004615200.1| - 5.4e-05 23.3 31.2 0.0036 17.6 7.1 4.4 4 0 0 4 4 4 2 The GLUG motif Pilin_N PF07790.11 gi|336476059|ref|YP_004615200.1| - 0.028 15.3 2.8 0.042 14.8 0.1 2.6 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal Pro_isomerase PF00160.21 gi|336476060|ref|YP_004615201.1| - 5.7e-48 163.2 0.2 6.3e-48 163.0 0.2 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF4680 PF15730.5 gi|336476060|ref|YP_004615201.1| - 0.037 14.4 0.0 0.049 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4680) HEM4 PF02602.15 gi|336476061|ref|YP_004615202.1| - 5.1e-34 117.6 0.0 6.4e-34 117.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD MGS PF02142.22 gi|336476061|ref|YP_004615202.1| - 0.091 13.0 0.0 1.9 8.8 0.0 2.4 2 0 0 2 2 2 0 MGS-like domain Nitro_FeMo-Co PF02579.17 gi|336476061|ref|YP_004615202.1| - 0.17 12.2 0.0 2.3 8.6 0.0 2.4 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Hexapep PF00132.24 gi|336476062|ref|YP_004615203.1| - 3.3e-10 39.3 1.6 0.0089 15.7 0.0 4.3 4 1 1 5 5 5 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|336476062|ref|YP_004615203.1| - 5.1e-06 26.1 4.1 0.00036 20.2 0.7 3.7 4 0 0 4 4 4 1 Hexapeptide repeat of succinyl-transferase Aminotran_4 PF01063.19 gi|336476063|ref|YP_004615204.1| - 1.9e-56 191.4 0.0 2.3e-56 191.2 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV SafA PF17073.5 gi|336476064|ref|YP_004615205.1| - 0.7 9.9 5.1 0.79 9.7 4.4 1.6 1 1 1 2 2 2 0 Two-component-system connector protein MoeA_N PF03453.17 gi|336476065|ref|YP_004615206.1| - 2.3e-40 137.9 0.0 3.9e-40 137.2 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.7 gi|336476065|ref|YP_004615206.1| - 2.7e-40 137.6 0.0 4.2e-40 136.9 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoCF_biosynth PF00994.24 gi|336476065|ref|YP_004615206.1| - 2.7e-22 79.0 0.1 4.2e-22 78.3 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|336476065|ref|YP_004615206.1| - 3.7e-11 43.0 0.0 1.1e-10 41.5 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MMR_HSR1_Xtn PF16897.5 gi|336476066|ref|YP_004615207.1| - 1.1e-32 112.2 1.5 2.4e-32 111.1 1.5 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|336476066|ref|YP_004615207.1| - 3e-21 75.6 0.0 6e-21 74.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|336476066|ref|YP_004615207.1| - 3.5e-18 65.4 0.0 6.9e-18 64.5 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|336476066|ref|YP_004615207.1| - 4.3e-14 52.3 0.4 1.5e-13 50.6 0.0 2.0 1 1 1 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|336476066|ref|YP_004615207.1| - 0.00026 21.1 0.8 0.074 13.1 0.2 2.7 2 1 1 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 gi|336476066|ref|YP_004615207.1| - 0.0015 18.5 0.6 0.018 14.9 0.1 2.3 2 0 0 2 2 2 1 RsgA GTPase ABC_tran PF00005.27 gi|336476066|ref|YP_004615207.1| - 0.0063 17.0 0.2 0.18 12.3 0.1 2.3 2 0 0 2 2 2 1 ABC transporter MeaB PF03308.16 gi|336476066|ref|YP_004615207.1| - 0.035 13.1 0.1 0.23 10.4 0.0 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|336476066|ref|YP_004615207.1| - 0.062 13.7 0.1 0.14 12.5 0.1 1.7 1 0 0 1 1 1 0 AAA ATPase domain SRPRB PF09439.10 gi|336476066|ref|YP_004615207.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_28 PF13521.6 gi|336476066|ref|YP_004615207.1| - 0.14 12.4 0.1 0.25 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|336476066|ref|YP_004615207.1| - 0.44 10.1 2.8 2.7 7.6 0.1 2.6 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Phage_integrase PF00589.22 gi|336476067|ref|YP_004615208.1| - 3.1e-17 62.9 0.0 5.5e-17 62.1 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|336476067|ref|YP_004615208.1| - 2.1e-05 24.9 0.0 3.9e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.6 gi|336476067|ref|YP_004615208.1| - 0.01 16.1 0.4 1.2 9.4 0.6 2.8 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain DZR PF12773.7 gi|336476067|ref|YP_004615208.1| - 0.013 15.5 0.2 0.025 14.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Phage_int_SAM_6 PF18644.1 gi|336476067|ref|YP_004615208.1| - 0.015 15.3 0.1 0.035 14.1 0.1 1.6 2 0 0 2 2 2 0 Phage integrase SAM-like domain zf-ribbon_3 PF13248.6 gi|336476067|ref|YP_004615208.1| - 0.017 14.5 1.1 0.035 13.5 1.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|336476067|ref|YP_004615208.1| - 0.031 14.0 3.2 0.064 13.0 3.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Phage_int_SAM_1 PF02899.17 gi|336476067|ref|YP_004615208.1| - 0.072 13.4 0.0 2.1 8.7 0.0 2.5 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain Ish1 PF10281.9 gi|336476067|ref|YP_004615208.1| - 0.11 12.8 0.3 0.24 11.7 0.3 1.6 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein zf-ACC PF17848.1 gi|336476067|ref|YP_004615208.1| - 0.18 11.9 1.2 9.3 6.4 0.1 2.8 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Phage_integrase PF00589.22 gi|336476068|ref|YP_004615209.1| - 2.4e-20 73.0 0.2 5.6e-20 71.8 0.0 1.6 2 0 0 2 2 2 1 Phage integrase family DUF5357 PF17310.2 gi|336476068|ref|YP_004615209.1| - 0.0034 16.0 0.1 0.0061 15.2 0.1 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5357) zinc_ribbon_15 PF17032.5 gi|336476068|ref|YP_004615209.1| - 0.022 15.5 1.0 0.05 14.4 1.0 1.6 1 0 0 1 1 1 0 zinc-ribbon family zf-C4_Topoisom PF01396.19 gi|336476068|ref|YP_004615209.1| - 0.075 12.8 0.2 0.2 11.5 0.2 1.6 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.9 gi|336476068|ref|YP_004615209.1| - 0.43 10.7 1.8 0.82 9.8 1.8 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DDE_Tnp_1 PF01609.21 gi|336476069|ref|YP_004615210.1| - 1.9e-18 66.9 2.8 3.2e-18 66.2 2.8 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|336476069|ref|YP_004615210.1| - 0.0084 16.5 0.2 0.031 14.6 0.1 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|336476069|ref|YP_004615210.1| - 0.015 15.3 0.1 0.043 13.8 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|336476069|ref|YP_004615210.1| - 0.017 15.1 0.4 0.038 14.0 0.4 1.5 1 0 0 1 1 1 0 Transposase DDE domain ResIII PF04851.15 gi|336476070|ref|YP_004615211.1| - 6.1e-12 45.9 1.0 6.1e-12 45.9 1.0 3.4 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit SWI2_SNF2 PF18766.1 gi|336476070|ref|YP_004615211.1| - 1.1e-09 38.3 0.8 3.3e-09 36.7 0.1 2.2 2 0 0 2 2 2 1 SWI2/SNF2 ATPase DEAD PF00270.29 gi|336476070|ref|YP_004615211.1| - 5.4e-05 23.0 0.0 0.00022 21.1 0.0 2.0 1 0 0 1 1 1 1 DEAD/DEAH box helicase RSS_P20 PF11757.8 gi|336476070|ref|YP_004615211.1| - 0.076 13.5 3.3 0.15 12.5 0.4 3.2 2 0 0 2 2 2 0 Suppressor of RNA silencing P21-like N-terminal domain DDE_Tnp_1 PF01609.21 gi|336476071|ref|YP_004615212.1| - 1.7e-18 67.1 2.8 2.9e-18 66.3 2.8 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|336476071|ref|YP_004615212.1| - 0.008 16.5 0.2 0.026 14.9 0.2 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|336476071|ref|YP_004615212.1| - 0.014 15.4 0.1 0.04 13.9 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|336476071|ref|YP_004615212.1| - 0.016 15.2 0.4 0.035 14.1 0.4 1.5 1 0 0 1 1 1 0 Transposase DDE domain UvrD-helicase PF00580.21 gi|336476072|ref|YP_004615213.1| - 4.8e-65 220.1 1.1 4.8e-65 220.1 1.1 4.3 2 2 0 2 2 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|336476072|ref|YP_004615213.1| - 9.3e-39 133.8 17.3 9.3e-39 133.8 17.3 2.0 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|336476072|ref|YP_004615213.1| - 2.4e-29 102.5 0.0 5.5e-29 101.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain PDDEXK_1 PF12705.7 gi|336476072|ref|YP_004615213.1| - 4.6e-21 75.9 0.1 8.2e-21 75.1 0.1 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.6 gi|336476072|ref|YP_004615213.1| - 1.5e-07 31.4 0.0 4.2e-05 23.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain UvrD_C_2 PF13538.6 gi|336476072|ref|YP_004615213.1| - 1.1e-06 28.3 0.0 0.00023 20.9 0.0 2.8 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain DUF2800 PF10926.8 gi|336476072|ref|YP_004615213.1| - 0.0009 18.6 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) AAA_11 PF13086.6 gi|336476072|ref|YP_004615213.1| - 0.0012 18.7 0.0 0.0031 17.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain Phage_DsbA PF11126.8 gi|336476072|ref|YP_004615213.1| - 0.0016 18.6 0.9 0.011 15.9 0.9 2.5 1 0 0 1 1 1 1 Transcriptional regulator DsbA Helicase_RecD PF05127.14 gi|336476072|ref|YP_004615213.1| - 0.0069 16.3 0.0 0.02 14.7 0.0 1.8 1 0 0 1 1 1 1 Helicase ResIII PF04851.15 gi|336476072|ref|YP_004615213.1| - 0.05 13.6 2.3 0.25 11.3 0.8 3.0 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Phage_integrase PF00589.22 gi|336476073|ref|YP_004615214.1| - 3.1e-08 33.6 0.0 7.5e-07 29.1 0.0 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_integr_3 PF16795.5 gi|336476073|ref|YP_004615214.1| - 0.00011 22.2 0.1 0.00042 20.2 0.1 1.7 1 1 0 1 1 1 1 Archaeal phage integrase AAA_22 PF13401.6 gi|336476075|ref|YP_004615216.1| - 2.4e-11 44.1 0.0 5.8e-11 42.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|336476075|ref|YP_004615216.1| - 6e-09 35.6 1.1 1e-07 31.6 0.0 2.5 3 0 0 3 3 2 1 Bacterial TniB protein AAA_16 PF13191.6 gi|336476075|ref|YP_004615216.1| - 1.1e-06 29.2 0.0 2.5e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|336476075|ref|YP_004615216.1| - 3.9e-06 27.3 2.1 1.3e-05 25.7 0.2 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|336476075|ref|YP_004615216.1| - 8.6e-06 25.8 0.0 1.4e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.22 gi|336476075|ref|YP_004615216.1| - 2.2e-05 23.8 0.0 4.4e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain ATPase_2 PF01637.18 gi|336476075|ref|YP_004615216.1| - 3.2e-05 24.0 0.2 3.2e-05 24.0 0.2 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|336476075|ref|YP_004615216.1| - 0.00013 21.6 0.0 0.00025 20.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region Cdc6_C PF09079.11 gi|336476075|ref|YP_004615216.1| - 0.00027 20.8 0.3 0.00072 19.5 0.1 1.8 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain Adeno_IVa2 PF02456.15 gi|336476075|ref|YP_004615216.1| - 0.00056 18.8 0.0 0.001 17.9 0.0 1.4 1 0 0 1 1 1 1 Adenovirus IVa2 protein AAA_5 PF07728.14 gi|336476075|ref|YP_004615216.1| - 0.001 19.1 0.1 0.0066 16.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|336476075|ref|YP_004615216.1| - 0.0013 17.9 0.0 0.0035 16.5 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) FtsK_SpoIIIE PF01580.18 gi|336476075|ref|YP_004615216.1| - 0.0023 17.3 0.0 0.043 13.2 0.0 2.1 1 1 1 2 2 2 1 FtsK/SpoIIIE family RNA_helicase PF00910.22 gi|336476075|ref|YP_004615216.1| - 0.0023 18.3 0.3 0.015 15.6 0.3 2.4 1 1 0 1 1 1 1 RNA helicase AAA_19 PF13245.6 gi|336476075|ref|YP_004615216.1| - 0.0024 18.2 0.1 0.012 16.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|336476075|ref|YP_004615216.1| - 0.0038 17.2 0.7 0.18 11.8 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Roc PF08477.13 gi|336476075|ref|YP_004615216.1| - 0.0051 17.0 0.6 0.02 15.1 0.1 2.3 3 1 0 3 3 1 1 Ras of Complex, Roc, domain of DAPkinase KAP_NTPase PF07693.14 gi|336476075|ref|YP_004615216.1| - 0.0052 16.1 0.6 0.76 9.0 0.4 2.3 1 1 1 2 2 2 2 KAP family P-loop domain AAA_11 PF13086.6 gi|336476075|ref|YP_004615216.1| - 0.0056 16.5 0.3 0.013 15.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|336476075|ref|YP_004615216.1| - 0.0083 15.5 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI PhoH PF02562.16 gi|336476075|ref|YP_004615216.1| - 0.016 14.6 0.0 2 7.8 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.6 gi|336476075|ref|YP_004615216.1| - 0.018 14.8 0.3 0.018 14.8 0.3 2.2 2 2 0 2 2 2 0 AAA domain SRPRB PF09439.10 gi|336476075|ref|YP_004615216.1| - 0.02 14.3 0.2 0.02 14.3 0.2 2.0 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ATPase PF06745.13 gi|336476075|ref|YP_004615216.1| - 0.024 14.0 0.7 0.19 11.1 0.0 2.2 2 0 0 2 2 2 0 KaiC DEAD PF00270.29 gi|336476075|ref|YP_004615216.1| - 0.027 14.3 0.8 7.5 6.3 0.2 2.5 1 1 1 2 2 2 0 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|336476075|ref|YP_004615216.1| - 0.028 14.9 0.0 0.062 13.8 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Sigma54_activat PF00158.26 gi|336476075|ref|YP_004615216.1| - 0.038 13.7 0.1 0.69 9.6 0.0 2.7 3 0 0 3 3 3 0 Sigma-54 interaction domain Peptidase_S28 PF05577.12 gi|336476075|ref|YP_004615216.1| - 0.051 12.4 0.1 0.1 11.3 0.1 1.4 1 0 0 1 1 1 0 Serine carboxypeptidase S28 DUF2075 PF09848.9 gi|336476075|ref|YP_004615216.1| - 0.052 12.8 0.0 0.09 12.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RuvB_N PF05496.12 gi|336476075|ref|YP_004615216.1| - 0.056 13.2 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain PRK PF00485.18 gi|336476075|ref|YP_004615216.1| - 0.067 12.9 0.4 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|336476075|ref|YP_004615216.1| - 0.072 13.3 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|336476075|ref|YP_004615216.1| - 0.08 12.5 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|336476075|ref|YP_004615216.1| - 0.11 12.2 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein T2SSE PF00437.20 gi|336476075|ref|YP_004615216.1| - 0.13 11.3 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.6 gi|336476075|ref|YP_004615216.1| - 0.69 9.9 6.2 0.48 10.5 1.5 2.8 2 1 0 2 2 2 0 AAA domain IL4_i_Ig PF18258.1 gi|336476076|ref|YP_004615217.1| - 0.052 13.8 0.1 0.057 13.6 0.1 1.1 1 0 0 1 1 1 0 Interleukin-4 inducing immunoglobulin-binding domain DUF4379 PF14311.6 gi|336476077|ref|YP_004615218.1| - 2.2e-113 370.6 65.9 1.9e-20 73.0 4.0 6.2 6 0 0 6 6 6 6 Probable Zinc-ribbon domain MTES_1575 PF18741.1 gi|336476077|ref|YP_004615218.1| - 6.4e-05 23.1 0.0 0.00014 22.0 0.0 1.5 1 0 0 1 1 1 1 REase_MTES_1575 DUF559 PF04480.12 gi|336476077|ref|YP_004615218.1| - 0.024 14.5 0.0 0.056 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF559) zf-Di19 PF05605.12 gi|336476077|ref|YP_004615218.1| - 0.069 13.5 22.0 23 5.4 0.4 6.4 6 0 0 6 6 6 0 Drought induced 19 protein (Di19), zinc-binding AAL_decarboxy PF03306.13 gi|336476077|ref|YP_004615218.1| - 0.094 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Alpha-acetolactate decarboxylase Anti-TRAP PF15777.5 gi|336476077|ref|YP_004615218.1| - 0.26 11.3 13.5 7.8 6.6 0.1 5.4 5 0 0 5 5 5 0 Tryptophan RNA-binding attenuator protein inhibitory protein Zn_Tnp_IS1595 PF12760.7 gi|336476077|ref|YP_004615218.1| - 1.9 8.5 20.3 37 4.4 0.2 6.4 7 0 0 7 7 7 0 Transposase zinc-ribbon domain FANCL_C PF11793.8 gi|336476077|ref|YP_004615218.1| - 6.7 7.0 18.0 11 6.3 0.2 5.8 6 0 0 6 6 6 0 FANCL C-terminal domain HTH_45 PF14947.6 gi|336476078|ref|YP_004615219.1| - 5.1e-20 71.2 3.1 5.9e-20 71.0 3.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix PDDEXK_4 PF14281.6 gi|336476079|ref|YP_004615220.1| - 1.7e-08 34.8 1.4 1.7e-08 34.8 1.4 1.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Dockerin_1 PF00404.18 gi|336476079|ref|YP_004615220.1| - 0.15 12.2 0.1 0.38 11.0 0.1 1.6 1 0 0 1 1 1 0 Dockerin type I domain Na_Ca_ex_C PF16494.5 gi|336476079|ref|YP_004615220.1| - 0.21 12.1 0.7 0.7 10.4 0.0 2.2 3 0 0 3 3 3 0 C-terminal extension of sodium/calcium exchanger domain PDZ_1 PF12812.7 gi|336476081|ref|YP_004615222.1| - 0.046 13.7 0.1 0.87 9.6 0.1 2.0 1 1 1 2 2 2 0 PDZ-like domain DDE_Tnp_1 PF01609.21 gi|336476082|ref|YP_004615223.1| - 1.6e-15 57.4 3.4 1.8e-15 57.2 3.4 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|336476082|ref|YP_004615223.1| - 0.00044 20.6 0.8 0.0027 18.1 0.3 2.4 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|336476082|ref|YP_004615223.1| - 0.0063 16.2 0.5 0.0083 15.8 0.5 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.6 gi|336476082|ref|YP_004615223.1| - 0.008 16.2 0.3 0.012 15.6 0.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain Glug PF07581.12 gi|336476084|ref|YP_004615225.1| - 6.8e-25 85.8 83.2 1.7e-05 24.9 1.9 10.2 10 0 0 10 10 10 8 The GLUG motif DUF4453 PF14627.6 gi|336476084|ref|YP_004615225.1| - 7.4 6.7 8.3 2.7 8.1 0.4 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4453) Exo_endo_phos PF03372.23 gi|336476085|ref|YP_004615226.1| - 0.00027 20.6 0.0 0.00049 19.7 0.0 1.5 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|336476085|ref|YP_004615226.1| - 0.015 15.1 0.1 0.034 14.0 0.0 1.7 1 1 0 1 1 1 0 Endonuclease-reverse transcriptase PAS_4 PF08448.10 gi|336476087|ref|YP_004615228.1| - 1.3e-27 96.2 0.0 2.8e-12 46.8 0.0 4.2 4 0 0 4 4 4 4 PAS fold HisKA_2 PF07568.12 gi|336476087|ref|YP_004615228.1| - 6.5e-27 93.4 6.6 6.5e-27 93.4 6.6 2.8 3 0 0 3 3 3 1 Histidine kinase PAS PF00989.25 gi|336476087|ref|YP_004615228.1| - 5.6e-25 87.5 0.2 7.7e-09 35.5 0.0 4.4 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|336476087|ref|YP_004615228.1| - 4.2e-23 81.6 7.5 7.2e-07 29.4 0.1 5.2 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.12 gi|336476087|ref|YP_004615228.1| - 1.8e-17 63.4 0.3 9.8e-13 48.2 0.1 3.9 3 0 0 3 3 3 1 PAS fold HWE_HK PF07536.14 gi|336476087|ref|YP_004615228.1| - 1.1e-08 35.7 4.1 1.5e-08 35.2 0.7 2.7 3 0 0 3 3 3 1 HWE histidine kinase PAS_8 PF13188.7 gi|336476087|ref|YP_004615228.1| - 1.1e-08 34.9 0.0 0.04 13.9 0.0 3.6 3 0 0 3 3 3 3 PAS domain GAF PF01590.26 gi|336476087|ref|YP_004615228.1| - 5.8e-06 27.0 0.0 1.4e-05 25.8 0.0 1.7 1 1 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|336476087|ref|YP_004615228.1| - 9.3e-06 26.0 0.0 1.9e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|336476087|ref|YP_004615228.1| - 1.6e-05 25.4 0.6 6.5e-05 23.4 0.6 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|336476087|ref|YP_004615228.1| - 0.0045 17.3 0.0 0.01 16.2 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|336476087|ref|YP_004615228.1| - 0.022 14.7 0.0 0.046 13.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Glug PF07581.12 gi|336476088|ref|YP_004615229.1| - 1.1e-64 210.6 222.8 0.00015 21.9 0.1 31.8 32 0 0 32 32 32 30 The GLUG motif PGF-CTERM PF18204.1 gi|336476089|ref|YP_004615230.1| - 0.00029 20.7 0.3 0.00054 19.8 0.3 1.5 1 0 0 1 1 1 1 PGF-CTERM motif SAD_SRA PF02182.17 gi|336476089|ref|YP_004615230.1| - 0.00043 20.0 0.1 0.0009 19.0 0.1 1.5 1 0 0 1 1 1 1 SAD/SRA domain Glyco_hydro_2 PF00703.21 gi|336476089|ref|YP_004615230.1| - 0.024 15.3 0.2 5.7 7.7 0.0 2.6 2 1 0 2 2 2 0 Glycosyl hydrolases family 2 BsuPI PF12690.7 gi|336476089|ref|YP_004615230.1| - 0.05 13.6 0.0 1.1 9.4 0.0 2.5 3 0 0 3 3 3 0 Intracellular proteinase inhibitor tRNA-synt_1e PF01406.19 gi|336476090|ref|YP_004615231.1| - 3.5e-101 338.5 0.0 5e-101 338.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|336476090|ref|YP_004615231.1| - 4.4e-14 52.0 0.4 2.4e-06 26.6 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|336476090|ref|YP_004615231.1| - 2.4e-12 47.1 0.4 5.8e-12 45.9 0.4 1.7 1 0 0 1 1 1 1 DALR domain tRNA-synt_1f PF01921.18 gi|336476090|ref|YP_004615231.1| - 3.2e-12 46.0 0.1 1.3e-05 24.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|336476090|ref|YP_004615231.1| - 6.8e-09 34.5 0.0 3.3e-06 25.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.19 gi|336476090|ref|YP_004615231.1| - 0.00028 19.9 0.2 0.0028 16.7 0.0 2.6 2 1 1 3 3 3 1 tRNA synthetases class I (R) PAS_3 PF08447.12 gi|336476091|ref|YP_004615232.1| - 9.7e-40 134.8 0.3 1.8e-14 53.8 0.2 5.1 6 0 0 6 6 6 4 PAS fold HisKA_2 PF07568.12 gi|336476091|ref|YP_004615232.1| - 2.6e-30 104.3 4.0 1.7e-29 101.7 2.1 2.6 2 0 0 2 2 2 1 Histidine kinase PAS_9 PF13426.7 gi|336476091|ref|YP_004615232.1| - 1.8e-25 89.2 1.4 2.8e-08 34.0 0.0 5.4 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.10 gi|336476091|ref|YP_004615232.1| - 1.8e-24 86.1 0.0 7.7e-06 26.1 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS PF00989.25 gi|336476091|ref|YP_004615232.1| - 2.3e-19 69.4 0.1 7.7e-08 32.3 0.0 4.8 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.7 gi|336476091|ref|YP_004615232.1| - 2.1e-17 62.7 0.2 7.2e-09 35.5 0.0 4.3 4 0 0 4 4 4 2 PAS domain HATPase_c PF02518.26 gi|336476091|ref|YP_004615232.1| - 2.4e-10 40.9 0.2 1.3e-09 38.6 0.1 2.4 2 1 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|336476091|ref|YP_004615232.1| - 2.9e-07 30.5 0.0 5.5e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|336476091|ref|YP_004615232.1| - 1.2e-06 29.1 0.9 3.9e-06 27.5 0.3 2.2 2 0 0 2 2 2 1 HWE histidine kinase PAS_11 PF14598.6 gi|336476091|ref|YP_004615232.1| - 2.1e-05 24.6 0.0 0.47 10.6 0.0 3.7 3 0 0 3 3 3 2 PAS domain DUF4646 PF15496.6 gi|336476091|ref|YP_004615232.1| - 0.012 16.3 0.0 0.051 14.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4646) PAS_7 PF12860.7 gi|336476091|ref|YP_004615232.1| - 0.065 13.4 0.0 21 5.3 0.0 3.5 3 0 0 3 3 3 0 PAS fold DUF5478 PF17572.2 gi|336476091|ref|YP_004615232.1| - 0.55 10.4 3.2 22 5.2 0.1 3.1 3 0 0 3 3 3 0 Family of unknown function (DUF5478) AAA PF00004.29 gi|336476092|ref|YP_004615233.1| - 5.1e-97 321.4 0.0 2e-48 164.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336476092|ref|YP_004615233.1| - 1e-30 105.2 3.5 4e-15 55.3 0.0 3.1 3 0 0 3 3 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|336476092|ref|YP_004615233.1| - 3.3e-26 91.3 0.2 3.6e-25 87.9 0.4 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|336476092|ref|YP_004615233.1| - 1.8e-15 57.4 0.0 1.2e-08 35.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|336476092|ref|YP_004615233.1| - 3.9e-15 56.6 0.0 2.7e-06 27.9 0.0 3.0 2 1 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.12 gi|336476092|ref|YP_004615233.1| - 8.8e-15 54.8 0.0 1.9e-06 27.7 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|336476092|ref|YP_004615233.1| - 5.1e-14 51.8 1.0 1.4e-13 50.4 0.2 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|336476092|ref|YP_004615233.1| - 1.6e-12 47.8 0.7 0.00064 20.0 0.1 4.6 3 2 0 3 3 2 2 AAA domain AAA_33 PF13671.6 gi|336476092|ref|YP_004615233.1| - 5.1e-11 42.9 0.0 9.2e-06 25.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|336476092|ref|YP_004615233.1| - 7.6e-11 42.2 2.7 0.00075 19.5 0.0 4.4 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|336476092|ref|YP_004615233.1| - 4.1e-10 39.4 0.5 0.00091 18.5 0.0 2.9 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|336476092|ref|YP_004615233.1| - 5.1e-10 39.5 0.0 0.00015 21.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|336476092|ref|YP_004615233.1| - 6.6e-09 36.4 0.0 0.005 17.4 0.0 2.9 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|336476092|ref|YP_004615233.1| - 8.7e-09 35.4 0.1 0.0048 16.6 0.0 3.3 2 1 0 3 3 3 2 IstB-like ATP binding protein NACHT PF05729.12 gi|336476092|ref|YP_004615233.1| - 2.2e-08 34.2 0.3 0.087 12.7 0.0 4.1 3 1 1 4 4 4 2 NACHT domain ABC_tran PF00005.27 gi|336476092|ref|YP_004615233.1| - 3.6e-08 34.0 0.0 0.019 15.5 0.0 2.8 2 0 0 2 2 2 2 ABC transporter Mg_chelatase PF01078.21 gi|336476092|ref|YP_004615233.1| - 4.5e-08 32.7 1.0 0.0052 16.2 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|336476092|ref|YP_004615233.1| - 2e-07 30.9 0.3 0.0056 16.4 0.0 2.9 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.22 gi|336476092|ref|YP_004615233.1| - 2.2e-07 31.2 0.0 0.036 14.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.26 gi|336476092|ref|YP_004615233.1| - 2.6e-07 30.5 0.0 0.049 13.3 0.0 3.3 3 1 0 3 3 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|336476092|ref|YP_004615233.1| - 6.8e-07 29.0 0.0 0.033 13.7 0.0 2.7 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_28 PF13521.6 gi|336476092|ref|YP_004615233.1| - 1.1e-06 29.1 0.0 0.039 14.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.17 gi|336476092|ref|YP_004615233.1| - 2.2e-06 27.0 1.3 0.018 14.1 0.0 2.7 3 0 0 3 3 3 2 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.18 gi|336476092|ref|YP_004615233.1| - 2.4e-06 27.5 0.0 0.017 14.9 0.0 2.9 2 1 1 3 3 3 2 Bacterial dnaA protein Zeta_toxin PF06414.12 gi|336476092|ref|YP_004615233.1| - 3e-06 26.6 0.0 0.077 12.3 0.0 3.0 2 0 0 2 2 2 2 Zeta toxin ATPase_2 PF01637.18 gi|336476092|ref|YP_004615233.1| - 6.4e-06 26.2 0.0 0.41 10.5 0.0 3.5 2 1 0 2 2 2 2 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|336476092|ref|YP_004615233.1| - 8.2e-06 25.2 0.0 0.19 10.9 0.0 3.1 3 0 0 3 3 3 2 NB-ARC domain AAA_3 PF07726.11 gi|336476092|ref|YP_004615233.1| - 9.5e-06 25.5 0.1 0.16 11.8 0.0 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|336476092|ref|YP_004615233.1| - 1.1e-05 25.1 3.9 0.43 10.1 0.1 4.2 3 1 1 4 4 4 2 AAA domain TsaE PF02367.17 gi|336476092|ref|YP_004615233.1| - 1.2e-05 25.3 0.0 0.21 11.6 0.0 2.6 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_11 PF13086.6 gi|336476092|ref|YP_004615233.1| - 1.8e-05 24.7 0.3 0.19 11.5 0.0 2.7 3 0 0 3 3 2 2 AAA domain Vps4_C PF09336.10 gi|336476092|ref|YP_004615233.1| - 3.3e-05 23.8 0.1 0.1 12.6 0.0 3.2 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain ATPase PF06745.13 gi|336476092|ref|YP_004615233.1| - 3.3e-05 23.4 1.2 1.3 8.3 0.0 3.7 3 1 1 4 4 3 2 KaiC DUF2075 PF09848.9 gi|336476092|ref|YP_004615233.1| - 3.6e-05 23.2 0.0 0.053 12.7 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.13 gi|336476092|ref|YP_004615233.1| - 6e-05 22.3 0.0 0.15 11.2 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_17 PF13207.6 gi|336476092|ref|YP_004615233.1| - 0.0001 22.7 0.2 0.24 11.8 0.0 3.2 3 0 0 3 3 2 1 AAA domain AAA_30 PF13604.6 gi|336476092|ref|YP_004615233.1| - 0.00012 21.8 0.1 0.54 10.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain TniB PF05621.11 gi|336476092|ref|YP_004615233.1| - 0.00019 20.9 0.1 2.9 7.3 0.0 3.7 3 1 1 4 4 3 1 Bacterial TniB protein PhoH PF02562.16 gi|336476092|ref|YP_004615233.1| - 0.00021 20.8 0.1 0.85 9.0 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein AFG1_ATPase PF03969.16 gi|336476092|ref|YP_004615233.1| - 0.00027 20.0 0.0 0.7 8.7 0.0 2.5 2 0 0 2 2 2 2 AFG1-like ATPase Guanylate_kin PF00625.21 gi|336476092|ref|YP_004615233.1| - 0.00031 20.5 0.4 18 4.9 0.0 4.4 2 2 2 4 4 4 0 Guanylate kinase ResIII PF04851.15 gi|336476092|ref|YP_004615233.1| - 0.00036 20.6 0.0 0.71 9.9 0.0 2.6 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|336476092|ref|YP_004615233.1| - 0.00051 20.4 0.2 1.6 9.1 0.0 3.1 3 0 0 3 3 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|336476092|ref|YP_004615233.1| - 0.00068 19.8 0.0 0.95 9.6 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain Viral_helicase1 PF01443.18 gi|336476092|ref|YP_004615233.1| - 0.00094 19.0 0.0 0.75 9.5 0.0 2.6 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|336476092|ref|YP_004615233.1| - 0.0015 18.5 1.9 8.9 6.2 0.0 4.3 3 1 1 4 4 4 0 NTPase ATP-synt_ab PF00006.25 gi|336476092|ref|YP_004615233.1| - 0.0091 15.7 0.0 1.4 8.5 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain CPT PF07931.12 gi|336476092|ref|YP_004615233.1| - 0.014 15.3 0.0 7.6 6.3 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Cytidylate_kin PF02224.18 gi|336476092|ref|YP_004615233.1| - 0.016 14.9 0.1 5 6.8 0.1 2.5 2 0 0 2 2 2 0 Cytidylate kinase T2SSE PF00437.20 gi|336476092|ref|YP_004615233.1| - 0.022 13.8 0.0 3.9 6.5 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein PduV-EutP PF10662.9 gi|336476092|ref|YP_004615233.1| - 0.026 14.3 0.0 8.4 6.1 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Torsin PF06309.11 gi|336476092|ref|YP_004615233.1| - 0.029 14.5 0.0 8.8 6.5 0.0 2.6 2 0 0 2 2 2 0 Torsin AAA_29 PF13555.6 gi|336476092|ref|YP_004615233.1| - 0.035 13.9 0.0 11 5.8 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain cobW PF02492.19 gi|336476092|ref|YP_004615233.1| - 0.038 13.6 0.0 7.5 6.1 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SKI PF01202.22 gi|336476092|ref|YP_004615233.1| - 0.051 13.7 1.0 29 4.7 0.0 3.8 4 0 0 4 4 4 0 Shikimate kinase MCM PF00493.23 gi|336476092|ref|YP_004615233.1| - 0.063 12.4 0.0 3.2 6.8 0.0 2.8 3 0 0 3 3 2 0 MCM P-loop domain RRM_occluded PF16842.5 gi|336476092|ref|YP_004615233.1| - 0.065 13.1 0.2 0.3 11.0 0.0 2.2 2 0 0 2 2 1 0 Occluded RNA-recognition motif Zot PF05707.12 gi|336476092|ref|YP_004615233.1| - 0.13 11.9 0.0 11 5.6 0.0 3.0 2 2 0 2 2 2 0 Zonular occludens toxin (Zot) IPT PF01745.16 gi|336476092|ref|YP_004615233.1| - 0.14 11.6 0.1 7.2 5.9 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase AAA_6 PF12774.7 gi|336476092|ref|YP_004615233.1| - 0.14 11.1 0.2 9.7 5.0 0.0 2.9 2 1 0 3 3 3 0 Hydrolytic ATP binding site of dynein motor region Hydin_ADK PF17213.3 gi|336476092|ref|YP_004615233.1| - 0.18 12.1 0.2 12 6.1 0.0 2.6 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain KAP_NTPase PF07693.14 gi|336476092|ref|YP_004615233.1| - 0.21 10.8 3.4 3.5 6.8 0.0 3.4 3 2 2 5 5 4 0 KAP family P-loop domain MS_channel PF00924.18 gi|336476093|ref|YP_004615234.1| - 7.7e-23 81.1 0.0 7.7e-23 81.1 0.0 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel MgtE PF01769.16 gi|336476093|ref|YP_004615234.1| - 1.9 8.9 15.5 14 6.1 14.1 2.3 1 1 0 1 1 1 0 Divalent cation transporter Spore_YtfJ PF09579.10 gi|336476095|ref|YP_004615236.1| - 7.2e-26 90.2 0.4 1.1e-25 89.6 0.4 1.3 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) DUF2953 PF11167.8 gi|336476096|ref|YP_004615237.1| - 1.4e-12 47.5 0.4 3.1e-11 43.2 0.0 2.7 2 1 1 3 3 3 1 Protein of unknown function (DUF2953) TspO_MBR PF03073.15 gi|336476097|ref|YP_004615238.1| - 7.7e-47 158.7 17.9 8.7e-47 158.6 17.9 1.0 1 0 0 1 1 1 1 TspO/MBR family FMN_red PF03358.15 gi|336476098|ref|YP_004615239.1| - 1.8e-30 105.7 0.0 2.3e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|336476098|ref|YP_004615239.1| - 1.7e-09 37.7 0.0 2e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold PDDEXK_1 PF12705.7 gi|336476099|ref|YP_004615240.1| - 3.5e-08 33.7 0.0 5.8e-08 32.9 0.0 1.4 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily BpuSI_N PF15516.6 gi|336476099|ref|YP_004615240.1| - 3.2e-05 23.9 0.0 6.5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 BpuSI N-terminal domain UvrD-helicase PF00580.21 gi|336476100|ref|YP_004615241.1| - 4.5e-51 174.3 0.0 1.4e-50 172.6 0.0 1.8 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|336476100|ref|YP_004615241.1| - 9e-28 97.4 0.0 2.1e-25 89.7 0.0 2.9 2 1 0 2 2 2 1 AAA domain UvrD_C PF13361.6 gi|336476100|ref|YP_004615241.1| - 8.6e-24 84.6 0.0 1.4e-13 50.9 0.0 2.8 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|336476100|ref|YP_004615241.1| - 6.8e-11 41.8 0.1 0.00055 19.7 0.0 3.1 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|336476100|ref|YP_004615241.1| - 2.3e-08 34.3 0.3 1.1e-06 28.8 0.4 2.3 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.18 gi|336476100|ref|YP_004615241.1| - 0.00011 22.0 0.1 6.2 6.5 0.0 4.3 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|336476100|ref|YP_004615241.1| - 0.00039 20.2 0.0 0.00085 19.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|336476100|ref|YP_004615241.1| - 0.022 14.5 0.0 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Cas_Cas4 PF01930.17 gi|336476100|ref|YP_004615241.1| - 0.15 12.2 0.1 0.36 10.9 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF83 Peptidase_A8 PF01252.18 gi|336476101|ref|YP_004615242.1| - 0.0069 16.6 1.9 0.0069 16.6 1.9 1.8 2 0 0 2 2 2 1 Signal peptidase (SPase) II Ribosomal_L18_c PF14204.6 gi|336476101|ref|YP_004615242.1| - 0.027 15.4 6.1 1.1 10.2 0.2 3.3 2 1 1 3 3 3 0 Ribosomal L18 C-terminal region Phage_holin_3_6 PF07332.11 gi|336476101|ref|YP_004615242.1| - 0.04 13.9 0.6 0.04 13.9 0.6 2.7 3 0 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4064 PF13273.6 gi|336476101|ref|YP_004615242.1| - 0.044 14.1 6.0 0.067 13.5 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) FOG_N PF15888.5 gi|336476101|ref|YP_004615242.1| - 0.1 13.0 2.4 2.4 8.5 0.4 2.7 2 1 0 2 2 2 0 Folded gastrulation N-terminus DUF4131 PF13567.6 gi|336476101|ref|YP_004615242.1| - 0.81 9.3 7.2 0.097 12.3 1.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) HSP20 PF00011.21 gi|336476102|ref|YP_004615243.1| - 0.00017 21.7 0.0 0.33 11.1 0.0 2.1 2 0 0 2 2 2 2 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|336476102|ref|YP_004615243.1| - 0.055 13.0 0.0 0.83 9.3 0.0 2.1 2 0 0 2 2 2 0 HSP20-like domain found in ArsA CS PF04969.16 gi|336476102|ref|YP_004615243.1| - 0.12 13.4 0.1 0.95 10.5 0.0 2.0 1 1 0 2 2 2 0 CS domain HSP20 PF00011.21 gi|336476103|ref|YP_004615244.1| - 2.1e-05 24.6 0.0 0.00017 21.7 0.0 1.9 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.16 gi|336476103|ref|YP_004615244.1| - 0.0036 18.3 0.0 0.0064 17.5 0.0 1.5 1 1 1 2 2 2 1 CS domain ArsA_HSP20 PF17886.1 gi|336476103|ref|YP_004615244.1| - 0.094 12.3 0.0 0.25 10.9 0.0 1.7 2 0 0 2 2 2 0 HSP20-like domain found in ArsA Rubrerythrin PF02915.17 gi|336476104|ref|YP_004615245.1| - 7.7e-08 32.8 0.6 9.4e-08 32.6 0.6 1.1 1 0 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|336476104|ref|YP_004615245.1| - 0.00065 19.5 0.3 0.0008 19.2 0.3 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Mn_catalase PF05067.12 gi|336476104|ref|YP_004615245.1| - 0.0011 18.0 0.7 0.0013 17.7 0.7 1.0 1 0 0 1 1 1 1 Manganese containing catalase Ferritin_2 PF13668.6 gi|336476104|ref|YP_004615245.1| - 0.0014 18.9 0.2 0.0015 18.7 0.2 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2202 PF09968.9 gi|336476104|ref|YP_004615245.1| - 0.0051 16.7 0.5 0.0061 16.4 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DUF2383 PF09537.10 gi|336476104|ref|YP_004615245.1| - 0.0072 16.7 0.1 0.0097 16.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|336476104|ref|YP_004615245.1| - 0.016 15.1 3.0 0.02 14.9 3.0 1.1 1 0 0 1 1 1 0 Ferritin-like domain Rubrerythrin PF02915.17 gi|336476105|ref|YP_004615246.1| - 2.3e-08 34.5 1.8 2.7e-08 34.3 1.8 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|336476105|ref|YP_004615246.1| - 2.8e-06 27.6 1.1 3.5e-06 27.3 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) COQ7 PF03232.13 gi|336476105|ref|YP_004615246.1| - 0.0014 18.4 0.4 0.0017 18.1 0.4 1.2 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 DUF2202 PF09968.9 gi|336476105|ref|YP_004615246.1| - 0.0059 16.5 0.8 0.0068 16.3 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Mn_catalase PF05067.12 gi|336476105|ref|YP_004615246.1| - 0.014 14.4 1.0 0.015 14.3 1.0 1.1 1 0 0 1 1 1 0 Manganese containing catalase Ferritin_2 PF13668.6 gi|336476105|ref|YP_004615246.1| - 0.028 14.6 0.1 0.033 14.4 0.1 1.1 1 0 0 1 1 1 0 Ferritin-like domain SelR PF01641.18 gi|336476106|ref|YP_004615247.1| - 2.4e-56 189.0 0.1 2.7e-56 188.9 0.1 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 gi|336476106|ref|YP_004615247.1| - 0.00093 19.4 0.0 0.0015 18.7 0.0 1.3 1 0 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zinc_ribbon_10 PF10058.9 gi|336476106|ref|YP_004615247.1| - 0.0012 18.5 0.5 0.09 12.5 0.0 2.2 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|336476106|ref|YP_004615247.1| - 0.013 15.0 0.6 3.2 7.3 0.0 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|336476106|ref|YP_004615247.1| - 0.019 14.5 0.9 5.2 6.8 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF678 PF05077.12 gi|336476106|ref|YP_004615247.1| - 0.019 15.1 0.2 8.5 6.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF678) HECT_2 PF09814.9 gi|336476106|ref|YP_004615247.1| - 0.02 13.7 0.6 0.49 9.2 0.1 2.0 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding ADD_ATRX PF17981.1 gi|336476106|ref|YP_004615247.1| - 0.024 14.5 0.2 0.41 10.6 0.0 2.1 2 0 0 2 2 2 0 Cysteine Rich ADD domain zf-ribbon_3 PF13248.6 gi|336476106|ref|YP_004615247.1| - 0.029 13.8 0.5 4 7.0 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain C1_2 PF03107.16 gi|336476106|ref|YP_004615247.1| - 0.048 14.0 0.4 0.49 10.8 0.1 2.2 2 0 0 2 2 2 0 C1 domain PLATZ PF04640.14 gi|336476106|ref|YP_004615247.1| - 0.063 13.9 0.1 2.6 8.8 0.0 2.2 2 0 0 2 2 2 0 PLATZ transcription factor HNH_5 PF14279.6 gi|336476106|ref|YP_004615247.1| - 0.08 12.8 0.2 1.9 8.4 0.0 2.3 2 0 0 2 2 2 0 HNH endonuclease RIG-I_C-RD PF11648.8 gi|336476106|ref|YP_004615247.1| - 0.084 13.1 0.1 1.6 9.0 0.0 2.1 2 0 0 2 2 2 0 C-terminal domain of RIG-I DZR PF12773.7 gi|336476106|ref|YP_004615247.1| - 0.086 12.9 0.9 0.28 11.3 0.9 1.9 1 1 0 1 1 1 0 Double zinc ribbon DUF2318 PF10080.9 gi|336476106|ref|YP_004615247.1| - 0.2 11.8 1.2 3.9 7.6 0.1 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) DUF2769 PF10967.8 gi|336476107|ref|YP_004615248.1| - 2.9e-14 53.4 10.1 2.9e-14 53.4 10.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2769) Pentapeptide PF00805.22 gi|336476109|ref|YP_004615250.1| - 2e-20 72.1 5.5 7e-10 38.4 0.5 2.2 2 0 0 2 2 2 2 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.6 gi|336476109|ref|YP_004615250.1| - 2.3e-09 37.3 2.0 0.00074 19.6 0.7 2.3 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.6 gi|336476109|ref|YP_004615250.1| - 5.6e-09 36.0 0.1 0.00024 21.2 0.0 2.1 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) PspC PF04024.12 gi|336476110|ref|YP_004615251.1| - 7.5e-23 80.1 1.0 7.5e-23 80.1 1.0 2.2 2 1 0 2 2 2 1 PspC domain DUF2370 PF10176.9 gi|336476110|ref|YP_004615251.1| - 0.0043 16.7 0.0 0.006 16.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2370) TctB PF07331.11 gi|336476110|ref|YP_004615251.1| - 0.0049 17.1 1.3 0.4 11.0 0.4 2.2 2 0 0 2 2 2 1 Tripartite tricarboxylate transporter TctB family DUF4834 PF16118.5 gi|336476110|ref|YP_004615251.1| - 0.02 15.8 0.0 0.02 15.8 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4834) FAM176 PF14851.6 gi|336476110|ref|YP_004615251.1| - 0.095 12.4 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 FAM176 family LRR19-TM PF15176.6 gi|336476110|ref|YP_004615251.1| - 0.097 12.7 0.0 0.097 12.7 0.0 1.5 2 0 0 2 2 2 0 Leucine-rich repeat family 19 TM domain Connexin PF00029.19 gi|336476110|ref|YP_004615251.1| - 0.14 11.9 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Connexin cwf18 PF08315.12 gi|336476110|ref|YP_004615251.1| - 0.26 11.9 3.9 0.36 11.5 3.9 1.1 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor DUF3784 PF12650.7 gi|336476110|ref|YP_004615251.1| - 0.55 10.5 9.2 0.72 10.1 2.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) SdpI PF13630.6 gi|336476110|ref|YP_004615251.1| - 5.2 7.3 11.9 0.32 11.2 1.4 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family ArsP_1 PF03773.13 gi|336476111|ref|YP_004615252.1| - 3.8e-49 167.4 11.6 5.6e-49 166.9 11.6 1.2 1 0 0 1 1 1 1 Predicted permease ST7 PF04184.12 gi|336476111|ref|YP_004615252.1| - 0.035 12.6 0.3 0.049 12.1 0.3 1.1 1 0 0 1 1 1 0 ST7 protein AIRC PF00731.20 gi|336476111|ref|YP_004615252.1| - 1.5 8.4 6.0 1 8.9 3.4 2.0 2 0 0 2 2 2 0 AIR carboxylase HTH_5 PF01022.20 gi|336476112|ref|YP_004615253.1| - 2e-17 62.8 0.2 2.9e-17 62.2 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|336476112|ref|YP_004615253.1| - 2.4e-08 33.9 0.0 9.8e-08 31.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain ArsR PF09824.9 gi|336476112|ref|YP_004615253.1| - 0.0055 16.3 0.1 0.012 15.2 0.0 1.5 2 0 0 2 2 2 1 ArsR transcriptional regulator PaaX PF07848.12 gi|336476112|ref|YP_004615253.1| - 0.009 16.2 0.0 0.021 15.0 0.0 1.6 2 0 0 2 2 2 1 PaaX-like protein Arg_repressor PF01316.21 gi|336476112|ref|YP_004615253.1| - 0.039 13.7 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain HTH_34 PF13601.6 gi|336476112|ref|YP_004615253.1| - 0.046 13.9 0.0 0.074 13.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Nore1-SARAH PF16517.5 gi|336476112|ref|YP_004615253.1| - 0.06 13.3 1.2 0.1 12.5 1.2 1.4 1 0 0 1 1 1 0 Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain MarR_2 PF12802.7 gi|336476112|ref|YP_004615253.1| - 0.072 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|336476112|ref|YP_004615253.1| - 0.076 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RNaseH_like PF04308.12 gi|336476112|ref|YP_004615253.1| - 0.14 12.0 0.6 0.74 9.7 0.3 2.1 1 1 2 3 3 3 0 Ribonuclease H-like CbiQ PF02361.16 gi|336476113|ref|YP_004615254.1| - 3.5e-40 137.9 7.4 4.6e-40 137.5 7.4 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|336476114|ref|YP_004615255.1| - 7.8e-31 107.4 0.0 1.4e-30 106.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336476114|ref|YP_004615255.1| - 1.7e-10 41.2 0.8 0.00016 21.6 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336476114|ref|YP_004615255.1| - 4.2e-07 29.6 0.4 1.9e-06 27.5 0.4 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336476114|ref|YP_004615255.1| - 3.4e-05 23.5 0.1 6.9e-05 22.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|336476114|ref|YP_004615255.1| - 0.00013 21.9 0.3 0.00024 21.1 0.1 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|336476114|ref|YP_004615255.1| - 0.0008 20.0 0.1 0.0012 19.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|336476114|ref|YP_004615255.1| - 0.0011 19.3 0.1 0.0028 17.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|336476114|ref|YP_004615255.1| - 0.0027 17.5 0.0 0.0053 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|336476114|ref|YP_004615255.1| - 0.0032 17.7 0.0 0.063 13.5 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|336476114|ref|YP_004615255.1| - 0.0063 16.9 0.0 0.013 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain PRK PF00485.18 gi|336476114|ref|YP_004615255.1| - 0.035 13.8 0.1 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_15 PF13175.6 gi|336476114|ref|YP_004615255.1| - 0.044 13.5 0.1 0.058 13.1 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 gi|336476114|ref|YP_004615255.1| - 0.05 12.9 1.5 0.89 8.8 0.1 2.4 1 1 0 2 2 2 0 KaiC Zeta_toxin PF06414.12 gi|336476114|ref|YP_004615255.1| - 0.053 12.8 0.0 0.13 11.5 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin DUF87 PF01935.17 gi|336476114|ref|YP_004615255.1| - 0.07 13.2 0.2 0.12 12.4 0.2 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|336476114|ref|YP_004615255.1| - 0.15 11.8 0.6 1.4 8.6 0.2 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|336476114|ref|YP_004615255.1| - 0.16 12.1 0.5 0.33 11.1 0.5 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|336476114|ref|YP_004615255.1| - 0.17 11.6 0.0 7.6 6.2 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|336476115|ref|YP_004615256.1| - 2.1e-31 109.3 0.0 3.2e-31 108.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|336476115|ref|YP_004615256.1| - 1.3e-08 34.6 0.8 1.8e-07 30.8 0.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336476115|ref|YP_004615256.1| - 4.3e-05 23.2 0.1 8.2e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|336476115|ref|YP_004615256.1| - 0.00012 22.4 0.1 0.00052 20.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|336476115|ref|YP_004615256.1| - 0.00014 21.8 0.2 0.0018 18.1 0.3 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|336476115|ref|YP_004615256.1| - 0.0006 19.6 0.0 0.00082 19.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|336476115|ref|YP_004615256.1| - 0.0016 18.5 0.1 0.015 15.3 0.0 2.4 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|336476115|ref|YP_004615256.1| - 0.002 18.5 0.0 0.0033 17.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|336476115|ref|YP_004615256.1| - 0.0033 17.4 0.0 0.0052 16.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_14 PF13173.6 gi|336476115|ref|YP_004615256.1| - 0.0046 17.0 0.0 0.88 9.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain TniB PF05621.11 gi|336476115|ref|YP_004615256.1| - 0.0062 16.0 0.0 0.72 9.2 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_23 PF13476.6 gi|336476115|ref|YP_004615256.1| - 0.0075 16.8 0.1 0.011 16.2 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|336476115|ref|YP_004615256.1| - 0.012 16.0 0.1 1.5 9.2 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|336476115|ref|YP_004615256.1| - 0.015 14.9 0.0 0.11 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|336476115|ref|YP_004615256.1| - 0.026 14.9 0.0 0.23 11.8 0.0 2.2 2 0 0 2 2 2 0 RNA helicase MMR_HSR1 PF01926.23 gi|336476115|ref|YP_004615256.1| - 0.037 14.1 0.1 0.086 12.9 0.1 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|336476115|ref|YP_004615256.1| - 0.043 13.7 0.0 0.079 12.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 gi|336476115|ref|YP_004615256.1| - 0.043 13.7 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain MeaB PF03308.16 gi|336476115|ref|YP_004615256.1| - 0.05 12.6 0.0 0.084 11.8 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|336476115|ref|YP_004615256.1| - 0.054 12.8 0.0 0.16 11.2 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.6 gi|336476115|ref|YP_004615256.1| - 0.077 13.5 0.1 0.3 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|336476115|ref|YP_004615256.1| - 0.088 12.0 0.1 0.17 11.0 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain PduV-EutP PF10662.9 gi|336476115|ref|YP_004615256.1| - 0.096 12.4 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|336476115|ref|YP_004615256.1| - 0.15 11.7 0.1 0.46 10.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|336476115|ref|YP_004615256.1| - 0.16 12.2 0.0 0.37 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|336476115|ref|YP_004615256.1| - 0.19 11.9 0.4 0.38 10.9 0.3 1.6 1 1 0 1 1 1 0 AAA domain BioY PF02632.14 gi|336476116|ref|YP_004615257.1| - 3.4e-42 143.7 17.5 3.4e-42 143.7 17.5 1.5 2 0 0 2 2 2 1 BioY family DUF2269 PF10027.9 gi|336476116|ref|YP_004615257.1| - 0.017 15.2 1.1 0.017 15.2 1.1 2.0 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2269) Cpn60_TCP1 PF00118.24 gi|336476117|ref|YP_004615258.1| - 1e-179 598.3 21.9 1.2e-179 598.0 21.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family ATPgrasp_N PF18130.1 gi|336476117|ref|YP_004615258.1| - 0.0088 16.6 0.1 0.041 14.4 0.1 2.2 1 0 0 1 1 1 1 ATP-grasp N-terminal domain Rubrerythrin PF02915.17 gi|336476119|ref|YP_004615260.1| - 3.2e-34 118.3 0.7 4.2e-34 117.9 0.7 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|336476119|ref|YP_004615260.1| - 2.1e-09 37.4 1.3 7.3e-09 35.7 1.2 1.8 1 1 0 1 1 1 1 Ferritin-like domain HypA PF01155.19 gi|336476119|ref|YP_004615260.1| - 0.00041 20.3 2.0 0.00079 19.4 1.2 1.8 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF892 PF05974.12 gi|336476119|ref|YP_004615260.1| - 0.00054 20.0 0.6 0.094 12.7 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF892) COQ7 PF03232.13 gi|336476119|ref|YP_004615260.1| - 0.0012 18.6 1.2 0.14 11.9 0.1 2.1 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 MCM_OB PF17207.3 gi|336476119|ref|YP_004615260.1| - 0.094 12.6 2.3 0.17 11.7 2.3 1.3 1 0 0 1 1 1 0 MCM OB domain zinc_ribbon_10 PF10058.9 gi|336476119|ref|YP_004615260.1| - 0.3 10.9 0.2 0.3 10.9 0.2 2.8 3 0 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ribbon_3 PF13248.6 gi|336476119|ref|YP_004615260.1| - 0.96 9.0 4.0 25 4.4 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain MMR_HSR1_C PF08438.10 gi|336476120|ref|YP_004615261.1| - 2.7e-30 105.2 0.0 7.2e-30 103.8 0.0 1.7 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|336476120|ref|YP_004615261.1| - 2.1e-19 69.7 0.0 8.9e-19 67.7 0.0 2.0 2 1 1 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|336476120|ref|YP_004615261.1| - 4.9e-14 52.1 0.1 1.9e-13 50.2 0.0 2.0 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.18 gi|336476120|ref|YP_004615261.1| - 4.2e-09 36.1 0.4 1.6e-07 30.9 0.0 2.5 3 0 0 3 3 3 1 Ferrous iron transport protein B Prenyltransf PF01255.19 gi|336476121|ref|YP_004615262.1| - 1.3e-28 100.1 0.0 1.2e-23 83.9 0.0 2.1 2 0 0 2 2 2 2 Putative undecaprenyl diphosphate synthase DHBP_synthase PF00926.19 gi|336476121|ref|YP_004615262.1| - 0.15 11.5 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 3,4-dihydroxy-2-butanone 4-phosphate synthase Acetyltransf_1 PF00583.25 gi|336476122|ref|YP_004615263.1| - 2.8e-18 66.3 0.2 3.4e-18 66.0 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336476122|ref|YP_004615263.1| - 1.1e-13 51.4 0.5 1.5e-13 51.0 0.5 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336476122|ref|YP_004615263.1| - 2.2e-12 47.0 0.1 2.9e-12 46.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336476122|ref|YP_004615263.1| - 2.4e-07 30.9 0.1 4.6e-06 26.7 0.1 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336476122|ref|YP_004615263.1| - 1.7e-06 27.9 0.1 2.2e-06 27.5 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|336476122|ref|YP_004615263.1| - 5.3e-06 26.6 0.1 4e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336476122|ref|YP_004615263.1| - 0.00013 22.0 0.1 0.00031 20.8 0.0 1.7 2 1 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 gi|336476122|ref|YP_004615263.1| - 0.016 15.3 0.1 0.026 14.7 0.1 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.18 gi|336476122|ref|YP_004615263.1| - 0.026 14.2 0.0 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 MOZ/SAS family Acetyltransf_18 PF18014.1 gi|336476122|ref|YP_004615263.1| - 0.071 12.9 0.0 0.28 11.0 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|336476122|ref|YP_004615263.1| - 0.095 12.7 0.1 0.45 10.5 0.1 2.0 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase Acetyltransf_8 PF13523.6 gi|336476122|ref|YP_004615263.1| - 0.11 12.2 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|336476122|ref|YP_004615263.1| - 0.11 12.0 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase TF_Zn_Ribbon PF08271.12 gi|336476123|ref|YP_004615264.1| - 0.00011 21.6 0.1 0.00046 19.7 0.1 2.0 2 0 0 2 2 2 1 TFIIB zinc-binding DUF1922 PF09082.10 gi|336476123|ref|YP_004615264.1| - 0.0052 17.0 1.1 0.0088 16.3 1.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) Chordopox_RPO7 PF05864.12 gi|336476123|ref|YP_004615264.1| - 0.014 15.7 0.6 0.014 15.7 0.6 1.7 2 0 0 2 2 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) zinc_ribbon_10 PF10058.9 gi|336476123|ref|YP_004615264.1| - 0.014 15.1 0.8 0.054 13.2 1.1 1.8 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-TFIIB PF13453.6 gi|336476123|ref|YP_004615264.1| - 0.019 14.3 3.0 0.056 12.8 3.0 1.8 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|336476123|ref|YP_004615264.1| - 0.028 14.4 1.9 0.05 13.6 1.9 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|336476123|ref|YP_004615264.1| - 0.037 14.0 0.4 0.064 13.2 0.4 1.4 1 0 0 1 1 1 0 zinc-ribbons Ribosomal_S27e PF01667.17 gi|336476123|ref|YP_004615264.1| - 0.062 13.0 2.0 0.11 12.2 2.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zf-FPG_IleRS PF06827.14 gi|336476123|ref|YP_004615264.1| - 0.075 12.9 3.3 0.17 11.7 3.5 1.5 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS DUF2688 PF10892.8 gi|336476123|ref|YP_004615264.1| - 0.079 12.4 0.3 0.079 12.4 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) zinc_ribbon_5 PF13719.6 gi|336476123|ref|YP_004615264.1| - 0.088 12.6 2.2 4.5 7.1 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|336476123|ref|YP_004615264.1| - 0.11 12.6 0.4 0.36 10.8 0.5 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|336476123|ref|YP_004615264.1| - 0.2 11.8 5.8 0.51 10.5 4.6 2.2 2 1 0 2 2 1 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|336476123|ref|YP_004615264.1| - 0.2 11.3 1.2 8.9 6.0 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger eIF-5_eIF-2B PF01873.17 gi|336476123|ref|YP_004615264.1| - 0.24 11.3 1.5 0.42 10.5 1.5 1.3 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zf-ACC PF17848.1 gi|336476123|ref|YP_004615264.1| - 0.32 11.1 4.9 2.5 8.3 0.0 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 gi|336476123|ref|YP_004615264.1| - 0.93 9.6 4.3 1 9.4 3.0 1.6 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|336476123|ref|YP_004615264.1| - 1.9 8.5 5.8 5.3 7.1 5.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|336476123|ref|YP_004615264.1| - 2.2 8.3 6.9 10 6.1 6.9 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain AAA PF00004.29 gi|336476124|ref|YP_004615265.1| - 2.6e-37 128.2 0.1 8.7e-37 126.5 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336476124|ref|YP_004615265.1| - 4.1e-08 32.9 0.0 1.4e-07 31.2 0.0 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|336476124|ref|YP_004615265.1| - 1.2e-06 28.6 0.9 6.6e-06 26.2 0.1 2.6 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|336476124|ref|YP_004615265.1| - 7.3e-06 26.2 0.0 2e-05 24.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.6 gi|336476124|ref|YP_004615265.1| - 1.4e-05 25.7 0.0 5.1e-05 23.8 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.6 gi|336476124|ref|YP_004615265.1| - 0.00013 22.5 0.1 0.005 17.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|336476124|ref|YP_004615265.1| - 0.00025 21.4 0.0 0.00054 20.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|336476124|ref|YP_004615265.1| - 0.001 18.3 0.0 0.0018 17.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RuvB_N PF05496.12 gi|336476124|ref|YP_004615265.1| - 0.0011 18.8 0.0 0.0021 17.8 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|336476124|ref|YP_004615265.1| - 0.0012 19.1 0.3 0.11 12.8 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336476124|ref|YP_004615265.1| - 0.0014 19.0 0.2 0.062 13.7 0.0 2.5 1 1 0 2 2 2 1 AAA ATPase domain AAA_2 PF07724.14 gi|336476124|ref|YP_004615265.1| - 0.0015 18.7 0.0 0.0061 16.7 0.0 2.1 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|336476124|ref|YP_004615265.1| - 0.0019 17.4 0.1 0.0054 16.0 0.0 1.6 1 1 1 2 2 2 1 TIP49 P-loop domain AAA_11 PF13086.6 gi|336476124|ref|YP_004615265.1| - 0.0038 17.1 0.2 0.19 11.5 0.3 2.3 1 1 1 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|336476124|ref|YP_004615265.1| - 0.021 14.4 0.0 0.051 13.1 0.0 1.7 1 1 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|336476124|ref|YP_004615265.1| - 0.021 14.2 0.1 0.053 12.9 0.1 1.6 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.6 gi|336476124|ref|YP_004615265.1| - 0.023 14.8 0.0 0.068 13.3 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain SKI PF01202.22 gi|336476124|ref|YP_004615265.1| - 0.025 14.7 0.0 0.058 13.5 0.0 1.7 1 0 0 1 1 1 0 Shikimate kinase TniB PF05621.11 gi|336476124|ref|YP_004615265.1| - 0.026 14.0 0.1 1.3 8.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial TniB protein IstB_IS21 PF01695.17 gi|336476124|ref|YP_004615265.1| - 0.033 13.9 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Cytidylate_kin2 PF13189.6 gi|336476124|ref|YP_004615265.1| - 0.039 14.1 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 Cytidylate kinase-like family NACHT PF05729.12 gi|336476124|ref|YP_004615265.1| - 0.063 13.2 0.3 6.6 6.6 0.0 2.5 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|336476124|ref|YP_004615265.1| - 0.067 12.9 0.0 0.14 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|336476124|ref|YP_004615265.1| - 0.069 13.1 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain MnmE_helical PF12631.7 gi|336476124|ref|YP_004615265.1| - 0.073 13.2 0.6 0.15 12.2 0.1 1.7 2 0 0 2 2 2 0 MnmE helical domain AAA_14 PF13173.6 gi|336476124|ref|YP_004615265.1| - 0.076 13.0 0.0 0.22 11.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|336476124|ref|YP_004615265.1| - 0.077 12.6 0.4 4.7 6.7 0.1 2.4 1 1 1 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|336476124|ref|YP_004615265.1| - 0.085 12.7 0.0 0.18 11.7 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Cytidylate_kin PF02224.18 gi|336476124|ref|YP_004615265.1| - 0.09 12.5 0.1 0.22 11.2 0.0 1.8 2 0 0 2 2 1 0 Cytidylate kinase AAA_6 PF12774.7 gi|336476124|ref|YP_004615265.1| - 0.092 11.7 0.0 0.19 10.7 0.0 1.6 1 1 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region Sigma54_activat PF00158.26 gi|336476124|ref|YP_004615265.1| - 0.093 12.4 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|336476124|ref|YP_004615265.1| - 0.15 11.7 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Lactamase_B_2 PF12706.7 gi|336476125|ref|YP_004615266.1| - 3.1e-26 92.1 0.7 3.7e-26 91.9 0.7 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336476125|ref|YP_004615266.1| - 2.1e-14 54.0 0.5 2.8e-14 53.6 0.5 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|336476125|ref|YP_004615266.1| - 0.0027 17.6 0.2 0.0069 16.3 0.2 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Bac_luciferase PF00296.20 gi|336476126|ref|YP_004615267.1| - 2.1e-62 211.3 0.0 2.6e-62 211.1 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF1522 PF07482.11 gi|336476126|ref|YP_004615267.1| - 0.026 14.8 0.9 0.24 11.7 0.7 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1522) PHP PF02811.19 gi|336476126|ref|YP_004615267.1| - 0.12 12.6 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 PHP domain FrhB_FdhB_C PF04432.13 gi|336476127|ref|YP_004615268.1| - 6.8e-35 120.2 0.6 1.3e-34 119.3 0.0 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|336476127|ref|YP_004615268.1| - 4.3e-15 55.6 0.0 1.3e-14 54.1 0.0 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_7 PF12838.7 gi|336476127|ref|YP_004615268.1| - 2.2e-07 31.3 13.4 2.2e-07 31.3 13.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336476127|ref|YP_004615268.1| - 3.1e-07 29.9 21.0 1.5e-05 24.6 6.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336476127|ref|YP_004615268.1| - 6.7e-07 29.3 22.7 5.3e-06 26.4 13.8 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476127|ref|YP_004615268.1| - 5.4e-05 23.3 10.5 5.4e-05 23.3 10.5 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336476127|ref|YP_004615268.1| - 0.00033 21.0 12.4 0.074 13.5 3.5 2.3 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336476127|ref|YP_004615268.1| - 0.001 19.6 9.3 0.0094 16.5 10.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476127|ref|YP_004615268.1| - 0.0017 18.3 4.6 0.0017 18.3 4.6 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336476127|ref|YP_004615268.1| - 0.009 16.1 5.5 0.009 16.1 5.5 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336476127|ref|YP_004615268.1| - 0.01 16.3 2.5 0.01 16.3 2.5 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|336476127|ref|YP_004615268.1| - 0.014 16.1 4.9 0.52 11.1 0.4 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|336476127|ref|YP_004615268.1| - 0.02 15.8 14.6 0.02 15.8 14.6 2.8 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|336476127|ref|YP_004615268.1| - 0.027 14.6 22.3 0.033 14.3 16.4 3.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336476127|ref|YP_004615268.1| - 0.045 14.6 5.3 1.1 10.1 0.6 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336476127|ref|YP_004615268.1| - 0.1 13.2 11.1 1.8 9.2 4.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CTP_transf_like PF01467.26 gi|336476128|ref|YP_004615269.1| - 8.4e-18 64.9 0.4 1.3e-16 61.0 0.4 2.1 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|336476128|ref|YP_004615269.1| - 0.016 14.4 0.0 0.93 8.6 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase FAD_syn PF06574.12 gi|336476128|ref|YP_004615269.1| - 0.025 14.5 0.1 0.045 13.6 0.1 1.4 1 0 0 1 1 1 0 FAD synthetase ATP-sulfurylase PF01747.17 gi|336476128|ref|YP_004615269.1| - 0.062 12.8 0.1 3.9 6.9 0.0 2.1 2 0 0 2 2 2 0 ATP-sulfurylase DUF5446 PF17522.2 gi|336476128|ref|YP_004615269.1| - 0.15 12.2 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5446) Usp PF00582.26 gi|336476129|ref|YP_004615270.1| - 1.7e-43 148.5 0.2 9.4e-22 78.0 0.0 2.1 2 0 0 2 2 2 2 Universal stress protein family DNA_photolyase PF00875.18 gi|336476129|ref|YP_004615270.1| - 0.018 15.1 0.0 0.55 10.2 0.0 2.2 2 0 0 2 2 2 0 DNA photolyase Ribul_P_3_epim PF00834.19 gi|336476129|ref|YP_004615270.1| - 0.026 13.9 0.6 0.083 12.3 0.1 2.1 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family SBF PF01758.16 gi|336476130|ref|YP_004615271.1| - 2.3e-46 157.9 19.6 2.3e-46 157.9 19.6 2.7 2 1 1 3 3 3 1 Sodium Bile acid symporter family DUF4179 PF13786.6 gi|336476130|ref|YP_004615271.1| - 0.23 12.0 4.8 2.9 8.4 0.3 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) AAA_18 PF13238.6 gi|336476131|ref|YP_004615272.1| - 1.3e-24 87.2 0.1 1.8e-24 86.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|336476131|ref|YP_004615272.1| - 4.1e-07 30.5 0.2 6.9e-06 26.5 0.1 2.3 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|336476131|ref|YP_004615272.1| - 1.2e-06 28.7 0.5 7.7e-06 26.1 0.5 1.9 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.6 gi|336476131|ref|YP_004615272.1| - 1.5e-05 25.2 0.0 0.023 14.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain CoaE PF01121.20 gi|336476131|ref|YP_004615272.1| - 8.3e-05 22.3 0.9 0.0081 15.8 0.1 2.1 2 0 0 2 2 2 1 Dephospho-CoA kinase ADK PF00406.22 gi|336476131|ref|YP_004615272.1| - 0.0025 17.9 0.5 0.54 10.4 0.0 2.6 1 1 1 2 2 2 1 Adenylate kinase dNK PF01712.19 gi|336476131|ref|YP_004615272.1| - 0.0026 17.6 3.3 0.35 10.7 0.3 2.3 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_28 PF13521.6 gi|336476131|ref|YP_004615272.1| - 0.0069 16.6 3.4 0.01 16.1 1.4 2.1 1 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|336476131|ref|YP_004615272.1| - 0.01 16.3 0.5 0.023 15.1 0.3 1.9 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|336476131|ref|YP_004615272.1| - 0.036 13.8 0.0 0.069 12.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MeaB PF03308.16 gi|336476131|ref|YP_004615272.1| - 0.042 12.8 0.8 0.27 10.2 0.9 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Cytidylate_kin PF02224.18 gi|336476131|ref|YP_004615272.1| - 0.056 13.2 0.6 0.63 9.7 0.2 2.1 1 1 1 2 2 2 0 Cytidylate kinase Rad17 PF03215.15 gi|336476131|ref|YP_004615272.1| - 0.059 13.3 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Cytidylate_kin2 PF13189.6 gi|336476131|ref|YP_004615272.1| - 0.098 12.8 0.4 0.43 10.7 0.4 2.1 1 1 0 1 1 1 0 Cytidylate kinase-like family AAA_5 PF07728.14 gi|336476131|ref|YP_004615272.1| - 0.11 12.5 0.2 0.31 11.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|336476131|ref|YP_004615272.1| - 0.6 9.4 5.3 1.6 8.0 0.5 2.8 2 1 1 3 3 3 0 KaiC GATase PF00117.28 gi|336476132|ref|YP_004615273.1| - 6.9e-47 159.7 0.0 8.4e-47 159.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|336476132|ref|YP_004615273.1| - 7.2e-17 61.9 0.3 2.7e-16 60.0 0.3 1.8 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.19 gi|336476132|ref|YP_004615273.1| - 0.013 15.4 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.24 gi|336476132|ref|YP_004615273.1| - 0.097 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family Chorismate_bind PF00425.18 gi|336476133|ref|YP_004615274.1| - 5.7e-95 317.8 0.0 5.6e-92 307.9 0.0 2.3 2 0 0 2 2 2 2 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|336476133|ref|YP_004615274.1| - 1.8e-26 93.1 0.9 3.1e-25 89.0 0.0 2.9 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|336476134|ref|YP_004615275.1| - 7.4e-34 117.2 0.4 1.2e-33 116.6 0.4 1.3 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.17 gi|336476134|ref|YP_004615275.1| - 0.005 16.2 0.2 0.1 11.9 0.0 2.4 2 1 0 2 2 2 1 Thiamine monophosphate synthase FMN_dh PF01070.18 gi|336476134|ref|YP_004615275.1| - 0.043 12.8 0.1 0.17 10.8 0.1 1.8 1 1 0 2 2 2 0 FMN-dependent dehydrogenase TraG_N PF07916.11 gi|336476134|ref|YP_004615275.1| - 0.24 10.2 0.0 0.32 9.8 0.0 1.1 1 0 0 1 1 1 0 TraG-like protein, N-terminal region Glycos_transf_3 PF00591.21 gi|336476135|ref|YP_004615276.1| - 3.1e-93 312.0 2.5 4e-93 311.7 2.5 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|336476135|ref|YP_004615276.1| - 3.5e-17 62.0 0.4 9.5e-17 60.6 0.4 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain GATase_3 PF07685.14 gi|336476136|ref|YP_004615277.1| - 3.5e-49 167.1 0.1 5.6e-49 166.4 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|336476136|ref|YP_004615277.1| - 5.8e-22 78.1 0.0 1.8e-21 76.5 0.0 1.8 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|336476136|ref|YP_004615277.1| - 8.6e-19 68.1 0.0 6.5e-18 65.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain SNO PF01174.19 gi|336476136|ref|YP_004615277.1| - 0.0017 18.3 0.0 0.0029 17.5 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.28 gi|336476136|ref|YP_004615277.1| - 0.13 12.1 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Methyltransf_31 PF13847.6 gi|336476137|ref|YP_004615278.1| - 2e-10 40.7 0.1 2.3e-10 40.5 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336476137|ref|YP_004615278.1| - 2.4e-10 41.0 0.2 5.8e-10 39.7 0.1 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|336476137|ref|YP_004615278.1| - 4.2e-10 39.8 0.8 6e-10 39.2 0.8 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|336476137|ref|YP_004615278.1| - 1.3e-09 37.8 0.2 1.7e-09 37.5 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|336476137|ref|YP_004615278.1| - 4.4e-09 36.1 1.4 7.6e-09 35.4 0.8 1.6 1 1 1 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) GCD14 PF08704.10 gi|336476137|ref|YP_004615278.1| - 7.7e-07 29.0 0.1 1e-06 28.6 0.1 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.19 gi|336476137|ref|YP_004615278.1| - 2.7e-06 27.6 0.1 3.3e-06 27.3 0.1 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_11 PF08241.12 gi|336476137|ref|YP_004615278.1| - 7.9e-06 26.4 0.1 1.3e-05 25.8 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336476137|ref|YP_004615278.1| - 2.1e-05 25.2 0.1 2.9e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336476137|ref|YP_004615278.1| - 3e-05 23.5 0.2 3.6e-05 23.2 0.2 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|336476137|ref|YP_004615278.1| - 7.8e-05 22.1 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.15 gi|336476137|ref|YP_004615278.1| - 8.8e-05 22.2 0.1 0.00013 21.7 0.1 1.3 1 1 0 1 1 1 1 Conserved hypothetical protein 95 DOT1 PF08123.13 gi|336476137|ref|YP_004615278.1| - 9.7e-05 22.0 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 PCMT PF01135.19 gi|336476137|ref|YP_004615278.1| - 0.00017 21.5 0.2 0.00021 21.1 0.2 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_5 PF01795.19 gi|336476137|ref|YP_004615278.1| - 0.00018 21.1 0.0 0.00021 20.9 0.0 1.2 1 0 0 1 1 1 1 MraW methylase family Methyltransf_32 PF13679.6 gi|336476137|ref|YP_004615278.1| - 0.00019 21.5 0.1 0.00039 20.4 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336476137|ref|YP_004615278.1| - 0.00081 19.3 0.0 0.001 18.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|336476137|ref|YP_004615278.1| - 0.0046 16.7 0.2 0.011 15.5 0.1 1.5 1 1 1 2 2 2 1 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|336476137|ref|YP_004615278.1| - 0.0072 15.8 0.5 0.01 15.3 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_15 PF09445.10 gi|336476137|ref|YP_004615278.1| - 0.0082 15.7 0.3 0.013 15.1 0.2 1.3 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase GidB PF02527.15 gi|336476137|ref|YP_004615278.1| - 0.018 14.3 0.3 0.026 13.9 0.3 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G MetW PF07021.12 gi|336476137|ref|YP_004615278.1| - 0.033 13.8 0.8 0.059 13.0 0.6 1.4 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW UPF0020 PF01170.18 gi|336476137|ref|YP_004615278.1| - 0.042 13.5 0.7 0.34 10.6 0.7 2.0 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_16 PF10294.9 gi|336476137|ref|YP_004615278.1| - 0.09 12.5 0.1 0.11 12.2 0.1 1.3 1 1 0 1 1 1 0 Lysine methyltransferase RrnaAD PF00398.20 gi|336476137|ref|YP_004615278.1| - 0.12 11.4 0.1 2.9 6.9 0.0 2.0 1 1 1 2 2 2 0 Ribosomal RNA adenine dimethylase TP_methylase PF00590.20 gi|336476138|ref|YP_004615279.1| - 6.4e-32 111.2 0.0 1.7e-31 109.9 0.0 1.6 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|336476139|ref|YP_004615280.1| - 1.2e-48 165.9 0.0 1.3e-48 165.7 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|336476139|ref|YP_004615280.1| - 0.0003 21.2 0.1 0.0011 19.4 0.1 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Dus PF01207.17 gi|336476139|ref|YP_004615280.1| - 0.0081 15.3 0.1 2.5 7.1 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TP_methylase PF00590.20 gi|336476140|ref|YP_004615281.1| - 1e-39 136.7 0.3 1.2e-39 136.4 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases ArsP_1 PF03773.13 gi|336476140|ref|YP_004615281.1| - 0.14 11.2 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 Predicted permease CbiC PF02570.15 gi|336476141|ref|YP_004615282.1| - 7.3e-62 208.5 0.8 8.7e-62 208.3 0.8 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase DsbD PF02683.15 gi|336476142|ref|YP_004615283.1| - 5.6e-30 104.8 28.6 2.1e-29 102.9 28.6 1.7 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|336476142|ref|YP_004615283.1| - 1.8e-10 41.1 18.2 2.5e-10 40.6 18.2 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region UPF0016 PF01169.19 gi|336476142|ref|YP_004615283.1| - 0.027 14.8 2.3 0.027 14.8 2.3 2.9 3 1 0 3 3 3 0 Uncharacterized protein family UPF0016 DUF373 PF04123.13 gi|336476142|ref|YP_004615283.1| - 0.8 9.1 15.1 1 8.7 15.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Thioredoxin PF00085.20 gi|336476143|ref|YP_004615284.1| - 3.3e-12 46.3 0.0 4.6e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|336476143|ref|YP_004615284.1| - 5.3e-05 23.5 0.0 0.00012 22.4 0.0 1.5 1 1 1 2 2 2 1 Thioredoxin-like Redoxin PF08534.10 gi|336476143|ref|YP_004615284.1| - 0.00027 20.7 0.1 0.025 14.3 0.0 2.2 1 1 1 2 2 2 1 Redoxin DUF953 PF06110.11 gi|336476143|ref|YP_004615284.1| - 0.00053 19.6 0.0 0.00072 19.2 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF953) Thioredoxin_3 PF13192.6 gi|336476143|ref|YP_004615284.1| - 0.00058 19.9 0.0 0.0009 19.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|336476143|ref|YP_004615284.1| - 0.001 19.5 0.1 0.0024 18.3 0.1 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|336476143|ref|YP_004615284.1| - 0.0016 18.3 0.0 0.002 18.0 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein AhpC-TSA PF00578.21 gi|336476143|ref|YP_004615284.1| - 0.0033 17.3 0.1 0.45 10.4 0.1 2.1 1 1 1 2 2 2 1 AhpC/TSA family Thioredoxin_9 PF14595.6 gi|336476143|ref|YP_004615284.1| - 0.01 15.6 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin DIM1 PF02966.16 gi|336476143|ref|YP_004615284.1| - 0.015 15.0 0.0 0.023 14.5 0.0 1.2 1 0 0 1 1 1 0 Mitosis protein DIM1 DUF929 PF06053.11 gi|336476143|ref|YP_004615284.1| - 0.037 13.3 1.1 2.8 7.2 0.2 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF929) HyaE PF07449.11 gi|336476143|ref|YP_004615284.1| - 0.064 13.2 0.0 0.096 12.7 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DUF836 PF05768.14 gi|336476143|ref|YP_004615284.1| - 0.09 13.2 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) OST3_OST6 PF04756.13 gi|336476143|ref|YP_004615284.1| - 0.21 10.9 0.0 0.32 10.3 0.0 1.4 2 0 0 2 2 2 0 OST3 / OST6 family, transporter family RibD_C PF01872.17 gi|336476144|ref|YP_004615285.1| - 1.9e-48 164.9 0.1 2.1e-48 164.8 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain CBS PF00571.28 gi|336476145|ref|YP_004615286.1| - 2.5e-41 139.9 11.3 4.8e-15 55.7 0.3 4.2 4 0 0 4 4 4 4 CBS domain Usp PF00582.26 gi|336476146|ref|YP_004615287.1| - 1.2e-38 132.8 0.0 1.3e-38 132.7 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Oxidored_nitro PF00148.19 gi|336476146|ref|YP_004615287.1| - 0.024 13.4 0.1 0.04 12.7 0.1 1.4 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Usp PF00582.26 gi|336476147|ref|YP_004615288.1| - 3.5e-36 124.8 0.0 3.9e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.20 gi|336476148|ref|YP_004615289.1| - 4.1e-30 105.3 0.6 5.9e-28 98.2 0.6 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|336476148|ref|YP_004615289.1| - 1.2e-08 34.9 0.0 3e-07 30.3 0.0 2.5 2 1 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|336476148|ref|YP_004615289.1| - 1.8e-07 30.8 0.0 2.6e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase AAA_5 PF07728.14 gi|336476149|ref|YP_004615290.1| - 6.6e-149 489.4 0.7 2e-25 89.4 0.0 6.4 6 0 0 6 6 6 6 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|336476149|ref|YP_004615290.1| - 6.5e-25 87.5 0.0 3.8e-05 23.6 0.0 5.5 5 0 0 5 5 5 4 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|336476149|ref|YP_004615290.1| - 2.1e-24 86.2 0.0 0.016 15.0 0.0 6.6 6 0 0 6 6 6 6 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|336476149|ref|YP_004615290.1| - 7.4e-21 74.6 0.7 0.023 14.4 0.0 7.2 7 0 0 7 7 7 5 Sigma-54 interaction domain AAA_22 PF13401.6 gi|336476149|ref|YP_004615290.1| - 6.2e-20 71.9 0.1 0.0011 19.2 0.0 7.4 7 0 0 7 7 6 3 AAA domain AAA_7 PF12775.7 gi|336476149|ref|YP_004615290.1| - 6.5e-20 71.4 0.0 0.01 15.4 0.0 6.5 6 0 0 6 6 6 5 P-loop containing dynein motor region MCM PF00493.23 gi|336476149|ref|YP_004615290.1| - 1.1e-19 70.4 0.1 0.029 13.5 0.0 6.3 6 0 0 6 6 6 6 MCM P-loop domain AAA PF00004.29 gi|336476149|ref|YP_004615290.1| - 1.5e-18 67.5 0.0 0.03 14.7 0.0 6.6 6 0 0 6 6 6 3 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|336476149|ref|YP_004615290.1| - 7.1e-17 62.3 5.0 0.0082 16.5 0.0 7.7 7 1 0 7 7 6 3 AAA ATPase domain Mg_chelatase PF01078.21 gi|336476149|ref|YP_004615290.1| - 3.5e-15 56.0 5.0 0.0081 15.6 0.0 7.3 6 1 0 6 6 6 3 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|336476149|ref|YP_004615290.1| - 4e-15 56.4 1.6 0.14 12.2 0.0 6.6 6 0 0 6 6 6 4 AAA domain (Cdc48 subfamily) ABC_tran PF00005.27 gi|336476149|ref|YP_004615290.1| - 2.2e-14 54.2 5.7 0.0053 17.3 0.0 6.6 7 0 0 7 7 5 3 ABC transporter PhoH PF02562.16 gi|336476149|ref|YP_004615290.1| - 9.2e-14 51.4 0.0 0.34 10.3 0.0 6.4 6 0 0 6 6 6 3 PhoH-like protein T2SSE PF00437.20 gi|336476149|ref|YP_004615290.1| - 6.7e-12 45.0 0.0 0.0001 21.4 0.0 3.9 3 0 0 3 3 3 3 Type II/IV secretion system protein TIP49 PF06068.13 gi|336476149|ref|YP_004615290.1| - 1.6e-11 44.0 0.0 0.16 11.2 0.0 6.2 6 0 0 6 6 6 1 TIP49 P-loop domain VWA PF00092.28 gi|336476149|ref|YP_004615290.1| - 7.9e-11 42.5 0.1 1.7e-10 41.4 0.1 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_29 PF13555.6 gi|336476149|ref|YP_004615290.1| - 8e-10 38.3 0.2 0.62 9.9 0.0 6.2 6 0 0 6 6 6 2 P-loop containing region of AAA domain ATPase PF06745.13 gi|336476149|ref|YP_004615290.1| - 2.1e-09 37.1 0.3 4.3 6.6 0.0 6.4 6 0 0 6 6 6 0 KaiC DUF815 PF05673.13 gi|336476149|ref|YP_004615290.1| - 2.8e-09 36.5 2.2 0.5 9.5 0.0 6.3 6 0 0 6 6 6 2 Protein of unknown function (DUF815) TsaE PF02367.17 gi|336476149|ref|YP_004615290.1| - 1.9e-08 34.3 0.1 2.1 8.3 0.0 6.3 6 0 0 6 6 6 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|336476149|ref|YP_004615290.1| - 2.5e-08 34.0 0.0 8.3 6.5 0.0 6.5 6 0 0 6 6 6 0 AAA domain VWA_2 PF13519.6 gi|336476149|ref|YP_004615290.1| - 1.3e-07 32.2 0.1 5.4e-07 30.2 0.1 2.1 1 0 0 1 1 1 1 von Willebrand factor type A domain Sigma54_activ_2 PF14532.6 gi|336476149|ref|YP_004615290.1| - 1.2e-06 28.7 0.0 18 5.4 0.0 6.2 6 0 0 6 6 6 0 Sigma-54 interaction domain RuvB_N PF05496.12 gi|336476149|ref|YP_004615290.1| - 1.2e-06 28.3 5.7 3.1 7.5 0.1 7.2 6 3 0 6 6 6 1 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|336476149|ref|YP_004615290.1| - 6.7e-06 26.0 0.0 34 4.1 0.0 6.1 6 0 0 6 6 6 0 AAA domain AAA_25 PF13481.6 gi|336476149|ref|YP_004615290.1| - 2e-05 24.3 0.3 37 3.8 0.0 6.9 8 0 0 8 8 7 0 AAA domain AAA_33 PF13671.6 gi|336476149|ref|YP_004615290.1| - 3.1e-05 24.2 4.1 2.3 8.4 0.0 5.7 7 0 0 7 7 6 1 AAA domain RNA_helicase PF00910.22 gi|336476149|ref|YP_004615290.1| - 4e-05 24.0 0.0 2.7 8.4 0.0 4.9 5 0 0 5 5 3 1 RNA helicase AAA_PrkA PF08298.11 gi|336476149|ref|YP_004615290.1| - 8.8e-05 21.6 0.1 1 8.2 0.0 3.5 3 0 0 3 3 3 2 PrkA AAA domain Guanylate_kin PF00625.21 gi|336476149|ref|YP_004615290.1| - 8.9e-05 22.2 0.1 2.9 7.5 0.0 3.6 3 0 0 3 3 3 1 Guanylate kinase AAA_18 PF13238.6 gi|336476149|ref|YP_004615290.1| - 0.00012 22.6 0.1 17 6.0 0.0 4.9 4 0 0 4 4 3 0 AAA domain AAA_6 PF12774.7 gi|336476149|ref|YP_004615290.1| - 0.00013 21.1 0.0 32 3.4 0.0 5.9 7 0 0 7 7 7 0 Hydrolytic ATP binding site of dynein motor region AFG1_ATPase PF03969.16 gi|336476149|ref|YP_004615290.1| - 0.00019 20.5 0.1 1.9 7.3 0.0 3.4 3 0 0 3 3 3 1 AFG1-like ATPase AAA_8 PF12780.7 gi|336476149|ref|YP_004615290.1| - 0.00029 20.3 3.8 7.1 5.9 0.1 5.9 6 0 0 6 6 6 0 P-loop containing dynein motor region D4 AAA_30 PF13604.6 gi|336476149|ref|YP_004615290.1| - 0.00035 20.3 7.3 6.3 6.5 0.0 6.1 7 0 0 7 7 6 0 AAA domain ResIII PF04851.15 gi|336476149|ref|YP_004615290.1| - 0.00036 20.6 0.0 52 3.8 0.0 5.4 5 0 0 5 5 5 0 Type III restriction enzyme, res subunit PPS_PS PF02006.16 gi|336476149|ref|YP_004615290.1| - 0.00039 20.0 0.2 1.8 8.1 0.0 4.1 4 0 0 4 4 4 1 Phosphopantothenate/pantothenate synthetase RsgA_GTPase PF03193.16 gi|336476149|ref|YP_004615290.1| - 0.00051 20.0 0.1 20 5.0 0.0 4.7 5 0 0 5 5 5 0 RsgA GTPase Gtr1_RagA PF04670.12 gi|336476149|ref|YP_004615290.1| - 0.00069 19.0 0.9 3 7.1 0.0 3.8 3 0 0 3 3 3 1 Gtr1/RagA G protein conserved region NB-ARC PF00931.22 gi|336476149|ref|YP_004615290.1| - 0.0009 18.5 3.5 37 3.4 0.0 5.7 6 0 0 6 6 6 0 NB-ARC domain PPV_E1_C PF00519.17 gi|336476149|ref|YP_004615290.1| - 0.0022 16.9 0.2 6.7 5.4 0.0 3.3 3 0 0 3 3 3 0 Papillomavirus helicase SMC_N PF02463.19 gi|336476149|ref|YP_004615290.1| - 0.0046 16.4 0.0 17 4.7 0.0 3.5 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain Viral_helicase1 PF01443.18 gi|336476149|ref|YP_004615290.1| - 0.0093 15.7 0.0 2.6 7.7 0.0 3.8 5 0 0 5 5 4 1 Viral (Superfamily 1) RNA helicase CobT_C PF11775.8 gi|336476149|ref|YP_004615290.1| - 0.013 15.2 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT VWA domain Septin PF00735.18 gi|336476149|ref|YP_004615290.1| - 0.031 13.6 0.1 11 5.2 0.0 3.3 3 0 0 3 3 3 0 Septin APS_kinase PF01583.20 gi|336476149|ref|YP_004615290.1| - 0.039 13.8 0.2 24 4.8 0.0 3.7 3 0 0 3 3 3 0 Adenylylsulphate kinase PduV-EutP PF10662.9 gi|336476149|ref|YP_004615290.1| - 0.063 13.0 0.1 44 3.8 0.0 4.3 6 0 0 6 6 3 0 Ethanolamine utilisation - propanediol utilisation Rad17 PF03215.15 gi|336476149|ref|YP_004615290.1| - 0.068 13.1 0.0 2.7 7.9 0.0 3.0 3 0 0 3 3 3 0 Rad17 P-loop domain CbbQ_C PF08406.10 gi|336476149|ref|YP_004615290.1| - 0.079 13.2 1.3 1.5 9.1 0.8 2.6 2 0 0 2 2 2 0 CbbQ/NirQ/NorQ C-terminal AAA_10 PF12846.7 gi|336476149|ref|YP_004615290.1| - 0.22 10.4 3.2 38 3.1 0.0 4.2 6 0 0 6 6 4 0 AAA-like domain WD40 PF00400.32 gi|336476149|ref|YP_004615290.1| - 0.26 12.2 9.1 81 4.3 0.0 5.9 6 0 0 6 6 3 0 WD domain, G-beta repeat NACHT PF05729.12 gi|336476149|ref|YP_004615290.1| - 0.68 9.8 5.9 73 3.2 0.0 5.8 8 0 0 8 8 6 0 NACHT domain VWA_CoxE PF05762.14 gi|336476149|ref|YP_004615290.1| - 1.5 8.2 7.8 0.047 13.1 0.2 2.2 2 0 0 2 2 1 0 VWA domain containing CoxE-like protein MDMPI_N PF11716.8 gi|336476149|ref|YP_004615290.1| - 1.6 9.4 4.6 4.8 7.9 4.6 1.8 1 0 0 1 1 1 0 Mycothiol maleylpyruvate isomerase N-terminal domain ATPase PF06745.13 gi|336476150|ref|YP_004615291.1| - 4.7e-73 245.3 0.4 5.3e-73 245.2 0.4 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|336476150|ref|YP_004615291.1| - 5.5e-07 28.6 0.1 7.3e-07 28.2 0.1 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein MEDS PF14417.6 gi|336476150|ref|YP_004615291.1| - 0.004 17.0 0.0 0.0071 16.2 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DnaB_C PF03796.15 gi|336476150|ref|YP_004615291.1| - 0.0044 16.4 0.0 0.0079 15.6 0.0 1.3 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|336476150|ref|YP_004615291.1| - 0.011 15.4 0.0 0.019 14.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|336476150|ref|YP_004615291.1| - 0.092 12.0 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) S-layer PF07752.11 gi|336476151|ref|YP_004615292.1| - 5.1e-168 556.6 18.9 1.5e-86 289.6 5.4 2.1 2 0 0 2 2 2 2 S-layer protein PKD PF00801.20 gi|336476151|ref|YP_004615292.1| - 1.9e-30 104.5 19.0 3e-15 55.8 2.0 4.2 4 0 0 4 4 4 2 PKD domain PKD_3 PF16820.5 gi|336476151|ref|YP_004615292.1| - 1.1e-09 37.9 6.4 0.00036 20.2 0.3 3.6 3 0 0 3 3 3 2 PKD-like domain PGF-CTERM PF18204.1 gi|336476151|ref|YP_004615292.1| - 1.6e-09 37.4 1.8 3.5e-09 36.3 1.8 1.6 1 0 0 1 1 1 1 PGF-CTERM motif Pep_M12B_propep PF01562.19 gi|336476151|ref|YP_004615292.1| - 0.00011 22.4 0.0 0.59 10.4 0.0 2.4 2 0 0 2 2 2 2 Reprolysin family propeptide DUF5011 PF16403.5 gi|336476151|ref|YP_004615292.1| - 0.00012 22.1 8.6 0.02 15.0 0.5 3.3 3 0 0 3 3 3 2 Domain of unknown function (DUF5011) adh_short PF00106.25 gi|336476151|ref|YP_004615292.1| - 0.00099 18.6 1.0 0.86 9.0 0.1 2.2 2 0 0 2 2 2 2 short chain dehydrogenase REJ PF02010.15 gi|336476151|ref|YP_004615292.1| - 0.0076 15.1 0.6 0.87 8.3 0.1 2.3 2 0 0 2 2 2 1 REJ domain IspD PF01128.19 gi|336476151|ref|YP_004615292.1| - 0.011 15.5 0.1 3.8 7.2 0.0 2.5 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Big_4 PF07532.11 gi|336476151|ref|YP_004615292.1| - 0.04 13.7 10.9 2.4 8.0 0.1 3.9 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 4) Tn7_Tnp_TnsA_C PF08721.11 gi|336476151|ref|YP_004615292.1| - 0.047 14.3 0.1 18 6.0 0.0 2.7 2 0 0 2 2 2 0 TnsA endonuclease C terminal Octopine_DH PF02317.17 gi|336476151|ref|YP_004615292.1| - 0.069 13.2 0.2 11 6.1 0.0 2.4 2 0 0 2 2 2 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain SnoaL_4 PF13577.6 gi|336476151|ref|YP_004615292.1| - 0.073 13.2 1.5 1.9 8.6 0.1 3.5 3 0 0 3 3 3 0 SnoaL-like domain DUF5027 PF16430.5 gi|336476151|ref|YP_004615292.1| - 0.075 12.8 0.2 7.9 6.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5027) ZoocinA_TRD PF16775.5 gi|336476151|ref|YP_004615292.1| - 0.11 12.6 0.6 53 4.0 0.0 4.1 5 0 0 5 5 5 0 Target recognition domain of lytic exoenzyme DUF3324 PF11797.8 gi|336476151|ref|YP_004615292.1| - 0.18 11.7 0.6 21 5.1 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function C-terminal (DUF3324) MBG PF17883.1 gi|336476151|ref|YP_004615292.1| - 0.45 11.2 13.4 2.4 8.8 1.6 3.4 3 0 0 3 3 3 0 MBG domain Cadherin-like PF12733.7 gi|336476151|ref|YP_004615292.1| - 1.5 9.4 5.7 4 8.0 1.0 2.8 2 0 0 2 2 2 0 Cadherin-like beta sandwich domain PGF-CTERM PF18204.1 gi|336476152|ref|YP_004615293.1| - 4.7e-06 26.4 4.5 4.7e-06 26.4 4.5 2.6 2 1 0 2 2 2 1 PGF-CTERM motif PepSY_2 PF13670.6 gi|336476152|ref|YP_004615293.1| - 0.37 10.8 0.1 0.37 10.8 0.1 1.8 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain SecE PF00584.20 gi|336476152|ref|YP_004615293.1| - 3.8 7.5 5.9 4.9 7.2 0.4 2.1 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex Castor1_N PF18700.1 gi|336476153|ref|YP_004615294.1| - 0.057 13.3 0.1 0.075 12.9 0.1 1.2 1 0 0 1 1 1 0 Cytosolic arginine sensor for mTORC1 subunit 1 N-terminal domain S-layer PF07752.11 gi|336476154|ref|YP_004615295.1| - 1.4e-161 535.5 31.8 1.9e-84 282.8 14.6 2.4 2 0 0 2 2 2 2 S-layer protein PKD PF00801.20 gi|336476154|ref|YP_004615295.1| - 2e-30 104.4 17.7 1.7e-15 56.6 2.3 3.7 4 0 0 4 4 4 2 PKD domain PKD_3 PF16820.5 gi|336476154|ref|YP_004615295.1| - 1.5e-09 37.4 10.4 9.2e-05 22.1 0.7 3.5 3 0 0 3 3 3 2 PKD-like domain PGF-CTERM PF18204.1 gi|336476154|ref|YP_004615295.1| - 1.7e-09 37.3 4.3 3.5e-09 36.3 4.3 1.5 1 0 0 1 1 1 1 PGF-CTERM motif DUF5496 PF17600.2 gi|336476154|ref|YP_004615295.1| - 0.0011 19.0 0.3 1.4 9.0 0.0 2.7 2 0 0 2 2 2 2 Family of unknown function (DUF5496) DUF1871 PF08958.10 gi|336476154|ref|YP_004615295.1| - 0.013 15.8 0.0 7.2 7.0 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1871) DUF4923 PF16270.5 gi|336476154|ref|YP_004615295.1| - 0.015 15.1 0.1 2.5 7.9 0.0 2.9 3 0 0 3 3 3 0 Lipocalin-like domain (DUF4923) tRNA-synt_1c_C PF03950.18 gi|336476154|ref|YP_004615295.1| - 0.039 13.8 1.2 5.6 6.8 0.1 2.5 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), anti-codon binding domain Hus1 PF04005.12 gi|336476154|ref|YP_004615295.1| - 0.088 11.9 0.1 8 5.5 0.0 2.3 2 0 0 2 2 2 0 Hus1-like protein MBG PF17883.1 gi|336476154|ref|YP_004615295.1| - 0.7 10.5 15.2 0.64 10.7 0.9 3.8 3 0 0 3 3 2 0 MBG domain DUF2171 PF09939.9 gi|336476154|ref|YP_004615295.1| - 1 9.7 4.8 9.7 6.6 0.2 3.2 3 0 0 3 3 2 0 Uncharacterized protein conserved in bacteria (DUF2171) DUF4969 PF16339.5 gi|336476154|ref|YP_004615295.1| - 1.3 9.5 0.0 1.3 9.5 0.0 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF4969) S-layer PF07752.11 gi|336476155|ref|YP_004615296.1| - 1.6e-161 535.4 27.2 1.6e-82 276.4 5.8 2.1 2 0 0 2 2 2 2 S-layer protein Trypan_PARP PF05887.11 gi|336476155|ref|YP_004615296.1| - 2.2e-13 50.3 33.8 5.9e-13 49.0 33.8 1.6 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) PGF-CTERM PF18204.1 gi|336476155|ref|YP_004615296.1| - 6.1e-10 38.7 3.3 1.3e-09 37.7 3.3 1.6 1 0 0 1 1 1 1 PGF-CTERM motif DUF4923 PF16270.5 gi|336476155|ref|YP_004615296.1| - 0.006 16.4 0.1 1.1 9.1 0.0 2.9 2 1 0 2 2 2 1 Lipocalin-like domain (DUF4923) Membrane_bind PF14564.6 gi|336476155|ref|YP_004615296.1| - 0.041 14.3 0.0 5.4 7.5 0.0 2.5 2 0 0 2 2 2 0 Membrane binding ZoocinA_TRD PF16775.5 gi|336476155|ref|YP_004615296.1| - 0.4 10.8 3.3 54 4.0 0.0 4.3 4 1 1 5 5 5 0 Target recognition domain of lytic exoenzyme Ribosomal_S6 PF01250.17 gi|336476156|ref|YP_004615297.1| - 0.081 13.2 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein S6 PhrC_PhrF PF11131.8 gi|336476156|ref|YP_004615297.1| - 0.086 12.4 0.4 0.19 11.3 0.4 1.6 1 0 0 1 1 1 0 Rap-phr extracellular signalling SpoIIM PF01944.17 gi|336476157|ref|YP_004615298.1| - 0.00013 22.0 4.7 0.00017 21.7 4.7 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M DUF1294 PF06961.13 gi|336476158|ref|YP_004615299.1| - 2.7e-20 72.4 0.9 4.1e-20 71.8 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) DUF2283 PF10049.9 gi|336476159|ref|YP_004615300.1| - 1.4e-08 34.8 1.2 1.4e-08 34.8 1.2 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2283) GXGXG PF01493.19 gi|336476160|ref|YP_004615301.1| - 2.1e-09 37.3 24.5 1.2e-06 28.2 16.2 3.7 1 1 1 2 2 2 2 GXGXG motif Amidohydro_3 PF07969.11 gi|336476161|ref|YP_004615302.1| - 9.1e-85 285.9 0.0 1.1e-84 285.7 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|336476161|ref|YP_004615302.1| - 4.3e-06 26.3 0.0 0.0012 18.2 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family Molybdopterin PF00384.22 gi|336476162|ref|YP_004615303.1| - 4.8e-17 62.0 0.0 1.4e-16 60.5 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|336476162|ref|YP_004615303.1| - 0.12 12.4 0.7 0.29 11.2 0.7 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.21 gi|336476163|ref|YP_004615304.1| - 1.8e-16 60.1 0.0 2.1e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FGE-sulfatase PF03781.16 gi|336476164|ref|YP_004615305.1| - 1.6e-49 168.9 4.9 1.3e-48 165.9 4.9 1.9 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 Imm1 PF14430.6 gi|336476164|ref|YP_004615305.1| - 0.12 13.0 0.0 0.18 12.4 0.0 1.3 1 0 0 1 1 1 0 Immunity protein Imm1 SBP_bac_5 PF00496.22 gi|336476165|ref|YP_004615306.1| - 2.3e-89 300.0 0.6 2.7e-89 299.8 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_11 PF08241.12 gi|336476166|ref|YP_004615307.1| - 1.1e-23 83.7 0.0 1.7e-23 83.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336476166|ref|YP_004615307.1| - 2.8e-23 82.4 0.0 4.9e-23 81.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336476166|ref|YP_004615307.1| - 4.7e-22 78.4 0.0 7.8e-22 77.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336476166|ref|YP_004615307.1| - 3.2e-14 53.1 0.0 4.2e-14 52.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336476166|ref|YP_004615307.1| - 2e-13 50.2 0.0 3.7e-13 49.3 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|336476166|ref|YP_004615307.1| - 3.2e-12 47.0 0.0 5.2e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|336476166|ref|YP_004615307.1| - 4.6e-07 29.5 0.0 6.7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|336476166|ref|YP_004615307.1| - 1.1e-06 28.4 0.0 1.7e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|336476166|ref|YP_004615307.1| - 4.4e-06 26.8 0.0 7.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|336476166|ref|YP_004615307.1| - 1.9e-05 24.2 0.0 2.8e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|336476166|ref|YP_004615307.1| - 0.00027 20.4 0.0 0.00045 19.7 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_18 PF12847.7 gi|336476166|ref|YP_004615307.1| - 0.00028 20.9 0.0 0.00043 20.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|336476166|ref|YP_004615307.1| - 0.00046 19.9 0.0 0.00066 19.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.19 gi|336476166|ref|YP_004615307.1| - 0.0013 18.6 0.0 0.0018 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|336476166|ref|YP_004615307.1| - 0.0028 16.8 0.0 0.0044 16.2 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase RrnaAD PF00398.20 gi|336476166|ref|YP_004615307.1| - 0.0033 16.5 0.0 0.0056 15.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|336476166|ref|YP_004615307.1| - 0.017 14.4 0.0 0.029 13.6 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase UDPG_MGDP_dh_N PF03721.14 gi|336476166|ref|YP_004615307.1| - 0.02 14.4 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TPMT PF05724.11 gi|336476166|ref|YP_004615307.1| - 0.026 14.2 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) UPF0020 PF01170.18 gi|336476166|ref|YP_004615307.1| - 0.035 13.8 0.0 0.054 13.2 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 adh_short PF00106.25 gi|336476166|ref|YP_004615307.1| - 0.063 12.7 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase adh_short_C2 PF13561.6 gi|336476166|ref|YP_004615307.1| - 0.087 12.4 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase DUF1194 PF06707.11 gi|336476166|ref|YP_004615307.1| - 0.097 11.9 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1194) GidB PF02527.15 gi|336476166|ref|YP_004615307.1| - 0.14 11.5 0.0 0.29 10.4 0.0 1.7 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G 3HCDH_N PF02737.18 gi|336476166|ref|YP_004615307.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BPD_transp_1 PF00528.22 gi|336476167|ref|YP_004615308.1| - 1.1e-44 152.4 10.0 1.1e-44 152.4 10.0 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.14 gi|336476167|ref|YP_004615308.1| - 0.35 11.5 5.0 0.31 11.7 0.5 2.6 3 0 0 3 3 3 0 Renin receptor-like protein BPD_transp_1 PF00528.22 gi|336476168|ref|YP_004615309.1| - 2.7e-26 92.4 11.7 2.7e-26 92.4 11.7 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|336476168|ref|YP_004615309.1| - 1.4e-06 28.2 0.1 1.4e-06 28.2 0.1 3.3 3 1 1 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|336476169|ref|YP_004615310.1| - 1.4e-23 84.0 0.0 1.9e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|336476169|ref|YP_004615310.1| - 1.2e-12 48.1 0.7 2.5e-12 47.1 0.7 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|336476169|ref|YP_004615310.1| - 1.5e-06 27.8 0.0 2.1e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|336476169|ref|YP_004615310.1| - 0.00011 22.0 0.0 0.022 14.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|336476169|ref|YP_004615310.1| - 0.00028 20.8 2.2 0.011 15.5 0.3 2.7 1 1 2 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|336476169|ref|YP_004615310.1| - 0.0015 18.8 0.0 0.0029 17.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|336476169|ref|YP_004615310.1| - 0.0043 16.5 0.0 0.029 13.8 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|336476169|ref|YP_004615310.1| - 0.021 15.2 0.1 0.047 14.1 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|336476169|ref|YP_004615310.1| - 0.022 14.7 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|336476169|ref|YP_004615310.1| - 0.04 13.4 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_29 PF13555.6 gi|336476169|ref|YP_004615310.1| - 0.043 13.6 0.0 0.075 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2075 PF09848.9 gi|336476169|ref|YP_004615310.1| - 0.056 12.7 0.0 0.071 12.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|336476169|ref|YP_004615310.1| - 0.08 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_23 PF13476.6 gi|336476169|ref|YP_004615310.1| - 0.091 13.3 0.0 0.13 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|336476169|ref|YP_004615310.1| - 0.097 12.4 0.0 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|336476170|ref|YP_004615311.1| - 2.8e-26 92.7 0.1 4.2e-26 92.1 0.1 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|336476170|ref|YP_004615311.1| - 2.1e-07 30.6 0.7 3.3e-07 30.0 0.7 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|336476170|ref|YP_004615311.1| - 6.3e-07 29.5 2.5 0.002 18.0 0.1 2.3 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|336476170|ref|YP_004615311.1| - 0.00041 20.6 0.7 0.0015 18.9 0.7 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336476170|ref|YP_004615311.1| - 0.0013 18.6 0.1 0.0028 17.6 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|336476170|ref|YP_004615311.1| - 0.0018 18.7 0.0 0.0024 18.3 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|336476170|ref|YP_004615311.1| - 0.002 17.9 0.4 0.026 14.3 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein oligo_HPY PF08352.12 gi|336476170|ref|YP_004615311.1| - 0.0036 17.8 0.0 0.0077 16.7 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_23 PF13476.6 gi|336476170|ref|YP_004615311.1| - 0.011 16.2 0.4 0.03 14.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|336476170|ref|YP_004615311.1| - 0.023 15.1 2.7 0.3 11.5 2.7 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|336476170|ref|YP_004615311.1| - 0.026 14.3 0.0 0.092 12.5 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|336476170|ref|YP_004615311.1| - 0.044 13.7 0.4 0.079 12.9 0.4 1.6 1 1 0 1 1 1 0 NACHT domain Septin PF00735.18 gi|336476170|ref|YP_004615311.1| - 0.058 12.7 0.2 0.15 11.3 0.1 1.8 1 1 0 2 2 2 0 Septin ATP-synt_ab PF00006.25 gi|336476170|ref|YP_004615311.1| - 0.066 12.9 0.1 0.069 12.8 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain PduV-EutP PF10662.9 gi|336476170|ref|YP_004615311.1| - 0.076 12.8 2.6 0.31 10.8 0.2 2.5 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|336476170|ref|YP_004615311.1| - 0.13 12.0 1.4 0.2 11.3 0.2 2.0 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|336476170|ref|YP_004615311.1| - 0.16 12.4 0.3 0.34 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|336476170|ref|YP_004615311.1| - 0.24 11.4 0.9 0.99 9.4 0.1 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|336476170|ref|YP_004615311.1| - 0.4 10.0 4.8 0.85 8.9 0.1 2.8 2 1 1 3 3 3 0 KaiC Fer4_16 PF13484.6 gi|336476171|ref|YP_004615312.1| - 3.4e-06 27.9 10.9 7e-06 26.9 10.9 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|336476171|ref|YP_004615312.1| - 1.4e-05 25.1 13.4 7.1e-05 22.8 13.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476171|ref|YP_004615312.1| - 5.8e-05 23.6 9.9 0.00016 22.1 9.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336476171|ref|YP_004615312.1| - 0.00024 21.0 16.9 0.0086 16.1 3.2 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336476171|ref|YP_004615312.1| - 0.0013 18.8 9.8 0.059 13.5 0.7 3.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476171|ref|YP_004615312.1| - 0.0077 16.4 14.0 0.29 11.3 14.1 2.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336476171|ref|YP_004615312.1| - 0.0083 15.9 18.3 0.012 15.4 3.4 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|336476171|ref|YP_004615312.1| - 0.072 13.5 11.6 0.47 10.9 11.6 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476171|ref|YP_004615312.1| - 3.1 8.1 17.8 1.2 9.4 1.2 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336476171|ref|YP_004615312.1| - 7.6 6.8 10.9 4.5 7.5 4.1 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476171|ref|YP_004615312.1| - 8.3 7.2 14.4 0.53 10.9 0.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain FKBP_C PF00254.28 gi|336476172|ref|YP_004615313.1| - 3.3e-21 75.4 0.1 4.5e-21 75.0 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase CMD PF02627.20 gi|336476173|ref|YP_004615314.1| - 2.5e-20 72.3 0.2 3.1e-20 72.0 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Auxin_canalis PF05703.11 gi|336476173|ref|YP_004615314.1| - 0.096 12.6 1.4 0.11 12.4 1.4 1.1 1 0 0 1 1 1 0 Auxin canalisation Flavodoxin_3 PF12641.7 gi|336476174|ref|YP_004615315.1| - 7.4e-27 94.0 0.1 8.6e-27 93.8 0.1 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|336476174|ref|YP_004615315.1| - 1.9e-08 34.7 0.0 2.7e-08 34.2 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|336476174|ref|YP_004615315.1| - 1.5e-05 25.3 0.1 2.9e-05 24.3 0.1 1.5 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_4 PF12682.7 gi|336476174|ref|YP_004615315.1| - 0.00043 20.0 0.1 0.13 12.0 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin DUF3939 PF13075.6 gi|336476175|ref|YP_004615316.1| - 0.17 11.9 0.8 0.23 11.5 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3939) OrfB_IS605 PF01385.19 gi|336476176|ref|YP_004615317.1| - 4.1e-26 91.6 1.4 8.3e-26 90.6 1.4 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|336476176|ref|YP_004615317.1| - 4.4e-21 74.6 0.4 9e-21 73.6 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|336476176|ref|YP_004615317.1| - 1e-18 66.6 0.1 3.4e-18 64.9 0.4 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain zinc_ribbon_10 PF10058.9 gi|336476176|ref|YP_004615317.1| - 0.018 14.8 1.4 0.037 13.7 1.4 1.5 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein M_domain PF12938.7 gi|336476176|ref|YP_004615317.1| - 0.023 14.5 2.1 0.039 13.7 2.1 1.3 1 0 0 1 1 1 0 M domain of GW182 zf-piccolo PF05715.13 gi|336476176|ref|YP_004615317.1| - 0.055 13.6 1.1 0.11 12.7 1.1 1.4 1 0 0 1 1 1 0 Piccolo Zn-finger Zn_Tnp_IS1595 PF12760.7 gi|336476176|ref|YP_004615317.1| - 0.18 11.8 1.0 0.33 11.0 1.0 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-RanBP PF00641.18 gi|336476176|ref|YP_004615317.1| - 8.2 5.9 7.5 11 5.5 1.5 2.4 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others E1-E2_ATPase PF00122.20 gi|336476177|ref|YP_004615318.1| - 6.3e-56 188.7 3.9 3.3e-55 186.4 0.9 2.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|336476177|ref|YP_004615318.1| - 4.6e-45 154.5 2.3 8.1e-45 153.7 2.3 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|336476177|ref|YP_004615318.1| - 1.8e-34 117.9 0.8 2.5e-16 59.9 0.1 3.0 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|336476177|ref|YP_004615318.1| - 6.2e-06 26.1 3.6 0.00026 20.8 0.6 2.4 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase CT_C_D PF02682.16 gi|336476177|ref|YP_004615318.1| - 0.0052 16.5 0.2 2.4 7.8 0.1 3.0 1 1 1 2 2 2 2 Carboxyltransferase domain, subdomain C and D Tox-PL-2 PF15643.6 gi|336476177|ref|YP_004615318.1| - 0.006 16.7 0.1 1.9 8.7 0.0 2.6 2 0 0 2 2 2 1 Papain fold toxin 2 HAD PF12710.7 gi|336476177|ref|YP_004615318.1| - 0.0087 16.5 0.1 0.027 14.9 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|336476177|ref|YP_004615318.1| - 0.014 15.5 0.4 0.048 13.8 0.4 1.9 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Spore_YhcN_YlaJ PF09580.10 gi|336476177|ref|YP_004615318.1| - 0.098 12.7 0.1 20 5.2 0.0 2.6 1 1 1 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) DUF2207 PF09972.9 gi|336476177|ref|YP_004615318.1| - 0.16 10.7 3.4 0.66 8.7 0.1 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2207) SHOCT PF09851.9 gi|336476178|ref|YP_004615319.1| - 4.2e-10 39.0 1.1 5.5e-10 38.7 1.1 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF3742 PF12553.8 gi|336476178|ref|YP_004615319.1| - 0.021 15.0 0.0 0.024 14.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) DUF4381 PF14316.6 gi|336476178|ref|YP_004615319.1| - 0.035 14.4 0.1 0.04 14.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) CcmH PF03918.14 gi|336476178|ref|YP_004615319.1| - 0.04 13.2 0.0 0.043 13.1 0.0 1.1 1 0 0 1 1 1 0 Cytochrome C biogenesis protein SLC3A2_N PF16028.5 gi|336476178|ref|YP_004615319.1| - 0.15 11.6 2.0 0.24 11.0 2.0 1.3 1 0 0 1 1 1 0 Solute carrier family 3 member 2 N-terminus BatD PF13584.6 gi|336476178|ref|YP_004615319.1| - 0.15 10.8 0.0 0.15 10.8 0.0 1.0 1 0 0 1 1 1 0 Oxygen tolerance Cytochrom_C PF00034.21 gi|336476179|ref|YP_004615320.1| - 1e-08 36.2 0.0 1.3e-08 35.8 0.0 1.2 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 gi|336476179|ref|YP_004615320.1| - 1.3e-05 25.4 0.0 2e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III DUF4198 PF10670.9 gi|336476180|ref|YP_004615321.1| - 3.5e-25 89.6 0.0 6e-25 88.9 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) DUF892 PF05974.12 gi|336476180|ref|YP_004615321.1| - 0.11 12.5 0.1 0.17 11.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF892) DUF1640 PF07798.11 gi|336476180|ref|YP_004615321.1| - 0.13 12.3 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) FlaC_arch PF05377.11 gi|336476180|ref|YP_004615321.1| - 0.21 12.0 0.5 0.37 11.2 0.5 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DNA_pol_B PF00136.21 gi|336476181|ref|YP_004615322.1| - 1.2e-113 380.3 0.0 1.5e-113 380.0 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|336476181|ref|YP_004615322.1| - 2.9e-52 177.9 0.0 4.1e-52 177.4 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|336476181|ref|YP_004615322.1| - 0.033 13.8 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HetR_C PF18460.1 gi|336476181|ref|YP_004615322.1| - 0.17 11.8 1.5 12 5.9 0.1 2.6 2 0 0 2 2 2 0 Heterocyst differentiation regulator C-terminal Hood domain Amidohydro_1 PF01979.20 gi|336476182|ref|YP_004615323.1| - 2.3e-22 79.8 0.3 2.9e-22 79.4 0.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|336476182|ref|YP_004615323.1| - 3.1e-11 43.4 0.0 0.00012 21.7 0.1 2.3 2 0 0 2 2 2 2 Amidohydrolase family ATPase PF06745.13 gi|336476183|ref|YP_004615324.1| - 9.5e-41 139.6 0.3 5.2e-40 137.2 0.3 1.9 1 1 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|336476183|ref|YP_004615324.1| - 8.3e-09 35.1 0.0 1.2e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|336476183|ref|YP_004615324.1| - 4.7e-08 32.8 0.0 8.2e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|336476183|ref|YP_004615324.1| - 3.1e-07 29.9 0.0 4.1e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|336476183|ref|YP_004615324.1| - 3.7e-07 29.9 0.0 5.8e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.11 gi|336476183|ref|YP_004615324.1| - 8.3e-06 24.7 0.1 0.11 11.2 0.0 2.8 2 1 1 3 3 3 2 GvpD gas vesicle protein T2SSE PF00437.20 gi|336476183|ref|YP_004615324.1| - 2.3e-05 23.6 0.0 3.4e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein DAP3 PF10236.9 gi|336476183|ref|YP_004615324.1| - 0.00077 18.7 0.0 0.93 8.6 0.0 2.1 1 1 1 2 2 2 2 Mitochondrial ribosomal death-associated protein 3 AAA_24 PF13479.6 gi|336476183|ref|YP_004615324.1| - 0.0019 17.9 0.0 0.0038 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|336476183|ref|YP_004615324.1| - 0.0022 18.5 0.0 0.0042 17.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|336476183|ref|YP_004615324.1| - 0.0047 17.0 0.0 0.009 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|336476183|ref|YP_004615324.1| - 0.0076 16.2 0.1 0.019 14.8 0.1 1.7 2 0 0 2 2 1 1 NTPase AAA_16 PF13191.6 gi|336476183|ref|YP_004615324.1| - 0.0091 16.4 0.0 0.015 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|336476183|ref|YP_004615324.1| - 0.01 16.2 0.3 0.017 15.5 0.3 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|336476183|ref|YP_004615324.1| - 0.01 15.6 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|336476183|ref|YP_004615324.1| - 0.012 15.3 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|336476183|ref|YP_004615324.1| - 0.012 15.3 0.0 0.12 12.0 0.0 2.2 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|336476183|ref|YP_004615324.1| - 0.013 15.8 0.0 0.022 15.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|336476183|ref|YP_004615324.1| - 0.019 15.2 0.0 0.038 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|336476183|ref|YP_004615324.1| - 0.019 15.1 0.0 0.038 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain PPV_E1_C PF00519.17 gi|336476183|ref|YP_004615324.1| - 0.022 13.6 0.1 0.16 10.8 0.0 1.9 2 0 0 2 2 2 0 Papillomavirus helicase AAA_7 PF12775.7 gi|336476183|ref|YP_004615324.1| - 0.023 14.2 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|336476183|ref|YP_004615324.1| - 0.053 12.7 0.0 0.084 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PAXNEB PF05625.11 gi|336476183|ref|YP_004615324.1| - 0.054 12.6 0.0 0.33 10.0 0.0 1.9 2 0 0 2 2 2 0 PAXNEB protein AAA_11 PF13086.6 gi|336476183|ref|YP_004615324.1| - 0.06 13.1 0.0 0.099 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_32 PF13654.6 gi|336476183|ref|YP_004615324.1| - 0.065 12.0 0.0 1.2 7.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|336476183|ref|YP_004615324.1| - 0.07 13.0 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATPase_2 PF01637.18 gi|336476183|ref|YP_004615324.1| - 0.08 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea cobW PF02492.19 gi|336476183|ref|YP_004615324.1| - 0.13 11.9 0.1 0.32 10.5 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|336476183|ref|YP_004615324.1| - 0.14 12.5 0.0 0.43 11.0 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_28 PF13521.6 gi|336476183|ref|YP_004615324.1| - 0.17 12.2 0.0 0.3 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF1614 PF07758.11 gi|336476184|ref|YP_004615325.1| - 7.5e-35 120.4 11.4 1.1e-34 119.9 11.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) DUF5317 PF17248.2 gi|336476184|ref|YP_004615325.1| - 0.027 14.5 0.2 0.027 14.5 0.2 3.1 2 2 0 3 3 3 0 Family of unknown function (DUF5317) Peptidase_M50B PF13398.6 gi|336476184|ref|YP_004615325.1| - 0.6 9.7 12.1 2.5 7.7 8.6 2.3 2 0 0 2 2 2 0 Peptidase M50B-like KH_1 PF00013.29 gi|336476185|ref|YP_004615326.1| - 7.8e-16 57.7 5.2 2.1e-09 37.1 0.6 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|336476185|ref|YP_004615326.1| - 0.00049 19.9 5.9 0.027 14.3 0.3 2.4 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|336476185|ref|YP_004615326.1| - 0.18 11.7 6.1 2.2 8.2 0.8 2.7 2 2 0 2 2 2 0 KH domain RIO1 PF01163.22 gi|336476186|ref|YP_004615327.1| - 4.1e-63 212.4 0.2 5.7e-63 211.9 0.2 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|336476186|ref|YP_004615327.1| - 1.6e-07 30.9 0.1 2.6e-07 30.3 0.1 1.3 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|336476186|ref|YP_004615327.1| - 0.00012 21.5 0.2 0.0013 18.1 0.2 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|336476186|ref|YP_004615327.1| - 0.00026 19.9 0.2 0.00038 19.3 0.2 1.2 1 0 0 1 1 1 1 Fungal protein kinase APH PF01636.23 gi|336476186|ref|YP_004615327.1| - 0.0011 18.9 0.0 0.0083 16.1 0.0 1.9 1 1 1 2 2 2 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|336476186|ref|YP_004615327.1| - 0.04 13.5 1.3 0.096 12.3 0.4 1.9 2 0 0 2 2 2 0 Choline/ethanolamine kinase Pkinase_Tyr PF07714.17 gi|336476186|ref|YP_004615327.1| - 0.1 11.9 0.2 0.25 10.6 0.2 1.8 1 1 0 1 1 1 0 Protein tyrosine kinase TGT PF01702.18 gi|336476188|ref|YP_004615329.1| - 2.7e-85 286.6 0.0 3.5e-85 286.2 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase UbiA PF01040.18 gi|336476189|ref|YP_004615330.1| - 6.8e-42 143.5 11.9 8.3e-42 143.2 11.9 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family PRA1 PF03208.19 gi|336476189|ref|YP_004615330.1| - 3 7.5 9.7 7 6.3 1.0 2.4 2 0 0 2 2 2 0 PRA1 family protein Pyr_redox_2 PF07992.14 gi|336476190|ref|YP_004615331.1| - 5.7e-09 35.6 0.0 0.00017 21.0 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336476190|ref|YP_004615331.1| - 2.2e-08 33.2 0.6 1.3e-05 24.1 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein Lycopene_cycl PF05834.12 gi|336476190|ref|YP_004615331.1| - 3e-08 33.1 0.0 5.3e-08 32.3 0.0 1.3 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|336476190|ref|YP_004615331.1| - 1e-05 25.0 0.1 0.011 15.0 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|336476190|ref|YP_004615331.1| - 4.6e-05 22.8 0.0 0.0011 18.3 0.0 2.1 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|336476190|ref|YP_004615331.1| - 0.00034 21.1 0.1 0.11 13.1 0.0 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|336476190|ref|YP_004615331.1| - 0.00072 19.0 0.1 0.0013 18.1 0.1 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|336476190|ref|YP_004615331.1| - 0.0017 17.7 0.0 0.0026 17.0 0.0 1.5 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|336476190|ref|YP_004615331.1| - 0.022 14.1 0.1 0.054 12.8 0.1 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|336476190|ref|YP_004615331.1| - 0.039 13.0 0.0 0.1 11.6 0.0 1.7 2 0 0 2 2 2 0 FAD binding domain TrkA_N PF02254.18 gi|336476190|ref|YP_004615331.1| - 0.082 13.2 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain DUF3932 PF13068.6 gi|336476190|ref|YP_004615331.1| - 0.22 11.8 0.3 1.6 9.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3932) Radical_SAM PF04055.21 gi|336476191|ref|YP_004615332.1| - 4.4e-20 72.7 0.0 6.9e-20 72.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|336476191|ref|YP_004615332.1| - 9.7e-09 35.6 0.2 2.1e-08 34.5 0.2 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|336476191|ref|YP_004615332.1| - 0.00012 22.3 0.0 0.00021 21.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|336476191|ref|YP_004615332.1| - 0.00053 20.1 0.0 0.001 19.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain I_LWEQ PF01608.17 gi|336476192|ref|YP_004615333.1| - 0.01 16.1 29.3 0.14 12.4 12.1 2.7 1 1 2 3 3 3 0 I/LWEQ domain OmpH PF03938.14 gi|336476192|ref|YP_004615333.1| - 0.02 15.2 13.8 0.02 15.2 13.8 3.6 2 1 1 3 3 3 0 Outer membrane protein (OmpH-like) Vps53_N PF04100.12 gi|336476192|ref|YP_004615333.1| - 0.12 11.3 19.6 0.3 10.0 11.1 2.6 1 1 1 2 2 2 0 Vps53-like, N-terminal Syntaxin_2 PF14523.6 gi|336476192|ref|YP_004615333.1| - 0.37 11.2 34.2 0.53 10.7 6.8 3.6 2 2 1 3 3 3 0 Syntaxin-like protein LEDGF PF11467.8 gi|336476192|ref|YP_004615333.1| - 0.4 10.3 27.2 5.4 6.7 4.9 4.3 1 1 1 3 3 3 0 Lens epithelium-derived growth factor (LEDGF) YkyA PF10368.9 gi|336476192|ref|YP_004615333.1| - 0.67 9.6 42.8 0.11 12.2 16.1 2.9 2 1 0 2 2 2 0 Putative cell-wall binding lipoprotein TPR_MLP1_2 PF07926.12 gi|336476192|ref|YP_004615333.1| - 1.9 8.6 47.6 5.4 7.1 14.0 4.2 1 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein Tup_N PF08581.10 gi|336476192|ref|YP_004615333.1| - 3.1 8.2 31.9 0.83 10.0 3.2 5.4 3 2 2 5 5 5 0 Tup N-terminal Laminin_II PF06009.12 gi|336476192|ref|YP_004615333.1| - 4.4 7.3 29.8 1.3 9.0 2.2 4.0 1 1 3 4 4 4 0 Laminin Domain II DUF2935 PF11155.8 gi|336476192|ref|YP_004615333.1| - 5.6 7.3 14.9 19 5.6 3.4 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Com_YlbF PF06133.11 gi|336476192|ref|YP_004615333.1| - 5.7 7.6 43.1 1.8 9.2 9.5 4.4 2 2 2 4 4 4 0 Control of competence regulator ComK, YlbF/YmcA T3SSipB PF16535.5 gi|336476192|ref|YP_004615333.1| - 8 6.9 29.3 4.4 7.8 9.0 3.4 1 1 1 3 3 3 0 Type III cell invasion protein SipB FUSC PF04632.12 gi|336476192|ref|YP_004615333.1| - 8.9 4.7 7.3 7.1 5.0 4.7 1.7 1 1 1 2 2 2 0 Fusaric acid resistance protein family Sec34 PF04136.15 gi|336476192|ref|YP_004615333.1| - 9.8 6.1 26.5 1.9 8.3 8.2 3.5 1 1 3 4 4 4 0 Sec34-like family HAD PF12710.7 gi|336476193|ref|YP_004615334.1| - 6.6e-23 82.1 0.1 8e-23 81.8 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336476193|ref|YP_004615334.1| - 7.3e-16 59.1 0.7 1e-15 58.6 0.7 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|336476193|ref|YP_004615334.1| - 7e-10 38.7 0.3 2.5e-08 33.6 0.3 2.1 1 1 0 1 1 1 1 Putative Phosphatase Hydrolase_3 PF08282.12 gi|336476193|ref|YP_004615334.1| - 2.7e-09 37.2 0.4 1.4e-07 31.5 0.0 2.6 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|336476193|ref|YP_004615334.1| - 1.7e-07 31.5 0.8 2.2e-06 27.9 0.8 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|336476193|ref|YP_004615334.1| - 0.031 13.8 0.1 6 6.3 0.0 2.2 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase MTD PF01993.18 gi|336476194|ref|YP_004615335.1| - 2.4e-123 410.8 0.9 2.7e-123 410.7 0.9 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase PK_C PF02887.16 gi|336476195|ref|YP_004615336.1| - 1.2e-13 51.3 0.2 1.7e-13 50.9 0.2 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain AP_endonuc_2 PF01261.24 gi|336476195|ref|YP_004615336.1| - 0.0015 18.0 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel MMR_HSR1_C PF08438.10 gi|336476195|ref|YP_004615336.1| - 0.1 13.1 0.1 0.17 12.4 0.1 1.4 1 0 0 1 1 1 0 GTPase of unknown function C-terminal PAC2 PF09754.9 gi|336476196|ref|YP_004615337.1| - 4.1e-52 177.3 0.1 4.7e-52 177.1 0.1 1.0 1 0 0 1 1 1 1 PAC2 family DUF473 PF04322.12 gi|336476197|ref|YP_004615338.1| - 4.5e-43 145.9 0.6 5e-43 145.7 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) DUF4951 PF16309.5 gi|336476197|ref|YP_004615338.1| - 0.047 13.7 0.0 0.07 13.2 0.0 1.4 1 0 0 1 1 1 0 Domian of unknown function (DUF4951) PKD PF00801.20 gi|336476198|ref|YP_004615339.1| - 2.8e-10 39.9 0.2 8.1e-10 38.4 0.2 1.8 1 0 0 1 1 1 1 PKD domain PKD_3 PF16820.5 gi|336476198|ref|YP_004615339.1| - 0.0017 18.0 0.1 0.006 16.3 0.1 2.0 1 0 0 1 1 1 1 PKD-like domain Y_Y_Y PF07495.13 gi|336476198|ref|YP_004615339.1| - 0.017 15.1 3.2 0.16 11.9 0.1 3.6 3 0 0 3 3 3 0 Y_Y_Y domain Big_3_4 PF13754.6 gi|336476198|ref|YP_004615339.1| - 0.02 14.6 0.1 5 6.9 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function Big_3_2 PF12245.8 gi|336476198|ref|YP_004615339.1| - 0.071 13.4 4.0 8.6 6.7 0.1 3.8 4 0 0 4 4 4 0 Bacterial Ig-like domain DUF4625 PF15418.6 gi|336476198|ref|YP_004615339.1| - 0.079 13.2 0.2 3.5 7.9 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4625) HYR PF02494.16 gi|336476198|ref|YP_004615339.1| - 0.12 12.8 0.1 6.7 7.1 0.0 3.0 3 0 0 3 3 3 0 HYR domain Filamin PF00630.19 gi|336476198|ref|YP_004615339.1| - 0.12 13.2 0.0 13 6.6 0.0 2.7 2 1 0 2 2 2 0 Filamin/ABP280 repeat DUF4367 PF14285.6 gi|336476198|ref|YP_004615339.1| - 0.94 9.9 7.1 2.4 8.6 0.8 4.2 4 1 0 4 4 4 0 Domain of unknown function (DUF4367) DUF169 PF02596.15 gi|336476200|ref|YP_004615341.1| - 7.2e-27 94.7 0.1 8.4e-27 94.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Endonuclease_5 PF04493.14 gi|336476201|ref|YP_004615342.1| - 3.1e-65 219.6 0.0 3.7e-65 219.3 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V tRNA-synt_2d PF01409.20 gi|336476202|ref|YP_004615343.1| - 6.5e-52 176.4 0.0 7.9e-48 163.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|336476202|ref|YP_004615343.1| - 1.5e-12 47.4 0.0 3.6e-12 46.1 0.0 1.7 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|336476202|ref|YP_004615343.1| - 1e-09 38.2 0.0 2.4e-05 23.9 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain Lambda_Bor PF06291.11 gi|336476202|ref|YP_004615343.1| - 0.082 12.9 0.1 0.24 11.4 0.1 1.7 1 0 0 1 1 1 0 Bor protein Translin PF01997.16 gi|336476203|ref|YP_004615344.1| - 8.6e-10 38.9 0.2 5e-09 36.4 0.2 2.0 1 1 0 1 1 1 1 Translin family UPF0147 PF03685.13 gi|336476204|ref|YP_004615345.1| - 1.9e-34 117.5 3.1 2.2e-34 117.4 3.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|336476204|ref|YP_004615345.1| - 0.042 14.1 0.2 0.2 11.9 0.1 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.12 gi|336476205|ref|YP_004615346.1| - 1e-13 51.1 1.7 1.6e-13 50.5 1.7 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|336476205|ref|YP_004615346.1| - 0.026 14.5 0.7 0.045 13.8 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|336476205|ref|YP_004615346.1| - 0.054 13.4 0.9 0.099 12.6 0.9 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 YdjO PF14169.6 gi|336476205|ref|YP_004615346.1| - 0.33 10.7 2.1 1.1 9.0 2.0 1.9 1 1 0 1 1 1 0 Cold-inducible protein YdjO Helicase_C PF00271.31 gi|336476206|ref|YP_004615347.1| - 1.3e-27 96.3 0.4 1.3e-22 80.2 0.0 3.4 3 1 1 4 4 4 2 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|336476206|ref|YP_004615347.1| - 8.4e-26 91.0 0.8 3.2e-25 89.2 0.0 2.4 3 0 0 3 3 3 1 ERCC4 domain DEAD PF00270.29 gi|336476206|ref|YP_004615347.1| - 1.3e-15 57.6 0.0 3.4e-15 56.3 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|336476206|ref|YP_004615347.1| - 8.1e-14 52.0 0.0 2.7e-13 50.3 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|336476206|ref|YP_004615347.1| - 7.9e-12 45.6 0.1 4.8e-11 43.1 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|336476206|ref|YP_004615347.1| - 1.5e-11 44.2 0.0 4.2e-11 42.8 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|336476206|ref|YP_004615347.1| - 2.5e-10 39.7 0.3 3.6e-07 29.7 0.0 3.5 4 0 0 4 4 4 2 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|336476206|ref|YP_004615347.1| - 0.0028 18.2 0.0 0.016 15.8 0.0 2.3 1 1 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold Ploopntkinase2 PF18747.1 gi|336476206|ref|YP_004615347.1| - 0.0056 16.0 0.1 0.1 11.8 0.0 2.6 3 0 0 3 3 3 1 P-loop Nucleotide Kinase2 HHH_3 PF12836.7 gi|336476206|ref|YP_004615347.1| - 0.0066 16.7 0.1 0.11 12.8 0.0 2.8 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|336476206|ref|YP_004615347.1| - 0.013 15.9 2.0 0.043 14.2 0.2 2.8 2 1 1 3 3 3 0 Helix-hairpin-helix domain RNA_pol_A_CTD PF03118.15 gi|336476206|ref|YP_004615347.1| - 0.065 13.0 0.1 0.065 13.0 0.1 2.4 3 0 0 3 3 3 0 Bacterial RNA polymerase, alpha chain C terminal domain Organ_specific PF10950.8 gi|336476206|ref|YP_004615347.1| - 0.16 12.7 1.4 0.51 11.1 0.3 2.3 2 0 0 2 2 2 0 Organ specific protein HGTP_anticodon PF03129.20 gi|336476207|ref|YP_004615348.1| - 1.1e-21 76.8 2.3 2.1e-20 72.7 0.0 3.5 4 0 0 4 4 4 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|336476207|ref|YP_004615348.1| - 3.1e-10 40.3 0.0 1.3e-09 38.3 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|336476207|ref|YP_004615348.1| - 0.0087 15.2 0.1 1.1 8.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) STAS PF01740.21 gi|336476208|ref|YP_004615349.1| - 0.051 13.2 0.0 0.15 11.7 0.0 1.8 1 1 0 1 1 1 0 STAS domain DeoC PF01791.9 gi|336476209|ref|YP_004615350.1| - 7.6e-60 202.5 0.0 8.8e-60 202.2 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|336476209|ref|YP_004615350.1| - 0.00023 20.8 0.2 0.00031 20.4 0.2 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.17 gi|336476209|ref|YP_004615350.1| - 0.0035 16.7 0.0 1.9 7.8 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase PEP_mutase PF13714.6 gi|336476209|ref|YP_004615350.1| - 0.085 12.3 0.1 2.7 7.4 0.0 2.3 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase dUTPase PF00692.19 gi|336476210|ref|YP_004615351.1| - 8.6e-12 44.9 0.0 1.2e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|336476210|ref|YP_004615351.1| - 0.14 10.9 0.0 0.19 10.5 0.0 1.5 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Desulfoferrod_N PF06397.12 gi|336476211|ref|YP_004615352.1| - 0.22 11.2 15.0 3.3 7.4 8.8 2.7 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain CxxCxxCC PF03692.15 gi|336476212|ref|YP_004615353.1| - 4e-08 33.8 4.6 7.1e-08 33.0 4.6 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|336476212|ref|YP_004615353.1| - 0.09 12.6 3.1 4.4 7.1 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3109) RuBisCO_large PF00016.20 gi|336476213|ref|YP_004615354.1| - 3.6e-92 308.8 0.0 3.3e-88 295.7 0.0 2.1 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|336476213|ref|YP_004615354.1| - 6.1e-29 100.6 0.0 1.2e-28 99.7 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain AAA_22 PF13401.6 gi|336476214|ref|YP_004615355.1| - 2.3e-08 34.4 0.1 6.4e-08 33.0 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA PF00004.29 gi|336476214|ref|YP_004615355.1| - 6.5e-08 33.1 0.1 1.6e-07 31.8 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|336476214|ref|YP_004615355.1| - 1.4e-07 32.1 0.3 4.8e-07 30.3 0.1 2.1 2 1 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|336476214|ref|YP_004615355.1| - 1.8e-05 24.8 0.3 4.5e-05 23.5 0.3 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Cdc6_C PF09079.11 gi|336476214|ref|YP_004615355.1| - 4.2e-05 23.4 0.8 0.00018 21.5 0.3 2.1 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain NACHT PF05729.12 gi|336476214|ref|YP_004615355.1| - 4.4e-05 23.5 0.0 8.2e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_18 PF13238.6 gi|336476214|ref|YP_004615355.1| - 0.00022 21.8 0.4 0.00081 19.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain TniB PF05621.11 gi|336476214|ref|YP_004615355.1| - 0.0004 19.8 0.2 0.0014 18.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial TniB protein AAA_24 PF13479.6 gi|336476214|ref|YP_004615355.1| - 0.00045 20.0 0.2 0.0029 17.4 0.0 2.2 2 1 1 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|336476214|ref|YP_004615355.1| - 0.00049 20.1 0.8 0.0021 18.1 0.8 2.3 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|336476214|ref|YP_004615355.1| - 0.0011 18.2 0.0 0.0019 17.4 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_5 PF07728.14 gi|336476214|ref|YP_004615355.1| - 0.0016 18.5 0.0 0.0039 17.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|336476214|ref|YP_004615355.1| - 0.0023 18.4 0.0 0.0073 16.8 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_30 PF13604.6 gi|336476214|ref|YP_004615355.1| - 0.0059 16.3 0.0 0.014 15.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|336476214|ref|YP_004615355.1| - 0.0064 16.8 0.0 0.026 14.9 0.0 2.0 2 1 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|336476214|ref|YP_004615355.1| - 0.0083 16.1 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE DNA_pol3_delta2 PF13177.6 gi|336476214|ref|YP_004615355.1| - 0.011 15.5 0.3 0.023 14.5 0.0 1.7 2 0 0 2 2 2 0 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|336476214|ref|YP_004615355.1| - 0.016 14.9 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|336476214|ref|YP_004615355.1| - 0.02 15.3 0.0 0.062 13.7 0.0 2.0 1 1 0 1 1 1 0 RNA helicase DUF2075 PF09848.9 gi|336476214|ref|YP_004615355.1| - 0.026 13.8 0.1 0.076 12.2 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|336476214|ref|YP_004615355.1| - 0.026 14.2 0.1 0.21 11.3 0.0 2.5 2 1 0 3 3 3 0 Sigma-54 interaction domain PhoH PF02562.16 gi|336476214|ref|YP_004615355.1| - 0.028 13.8 0.0 0.055 12.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_7 PF12775.7 gi|336476214|ref|YP_004615355.1| - 0.037 13.6 0.0 0.33 10.5 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|336476214|ref|YP_004615355.1| - 0.04 13.7 0.0 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein DALR_1 PF05746.15 gi|336476214|ref|YP_004615355.1| - 0.046 13.9 3.1 1.4 9.1 0.0 3.0 2 1 0 2 2 2 0 DALR anticodon binding domain DEAD PF00270.29 gi|336476214|ref|YP_004615355.1| - 0.086 12.6 0.0 0.28 10.9 0.0 1.8 1 1 0 1 1 1 0 DEAD/DEAH box helicase PduV-EutP PF10662.9 gi|336476214|ref|YP_004615355.1| - 0.097 12.4 0.4 1.8 8.3 0.0 2.7 3 1 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.6 gi|336476214|ref|YP_004615355.1| - 0.097 12.9 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|336476214|ref|YP_004615355.1| - 0.1 11.6 0.0 0.22 10.5 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|336476214|ref|YP_004615355.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|336476214|ref|YP_004615355.1| - 0.12 11.9 0.0 0.32 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|336476214|ref|YP_004615355.1| - 1.8 9.0 0.0 1.8 9.0 0.0 2.8 2 1 0 2 2 2 0 AAA domain FAD_binding_3 PF01494.19 gi|336476215|ref|YP_004615356.1| - 2.8e-14 53.1 0.4 3e-12 46.5 0.0 2.3 2 1 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|336476215|ref|YP_004615356.1| - 1.6e-10 41.1 0.1 0.00017 21.3 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|336476215|ref|YP_004615356.1| - 1.4e-07 31.1 0.0 7.4e-07 28.7 0.0 1.7 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|336476215|ref|YP_004615356.1| - 2.7e-07 29.8 0.1 0.0017 17.3 0.0 2.7 2 1 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|336476215|ref|YP_004615356.1| - 2.6e-06 27.1 0.1 4.2e-06 26.4 0.1 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|336476215|ref|YP_004615356.1| - 2.2e-05 23.7 0.0 2.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|336476215|ref|YP_004615356.1| - 3.2e-05 22.8 0.0 0.00024 19.9 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|336476215|ref|YP_004615356.1| - 3.4e-05 23.2 0.0 5.6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|336476215|ref|YP_004615356.1| - 4.4e-05 22.9 0.0 0.16 11.2 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|336476215|ref|YP_004615356.1| - 7.5e-05 22.0 0.0 0.00016 20.9 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|336476215|ref|YP_004615356.1| - 0.0003 21.0 0.2 0.0033 17.6 0.0 2.7 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|336476215|ref|YP_004615356.1| - 0.00042 19.5 0.0 0.0089 15.1 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|336476215|ref|YP_004615356.1| - 0.051 14.1 0.0 2.9 8.5 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HhH-GPD PF00730.25 gi|336476216|ref|YP_004615357.1| - 5.2e-24 84.8 0.0 6.6e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|336476216|ref|YP_004615357.1| - 1.3e-08 34.2 0.0 4.5e-08 32.6 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|336476216|ref|YP_004615357.1| - 0.011 15.8 0.0 3.3 7.9 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF2400 PF09674.10 gi|336476216|ref|YP_004615357.1| - 0.016 15.2 0.1 0.083 12.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) HHH_5 PF14520.6 gi|336476216|ref|YP_004615357.1| - 0.022 15.3 0.2 1.5 9.5 0.2 2.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|336476216|ref|YP_004615357.1| - 0.032 14.6 4.4 0.096 13.1 3.4 2.2 1 1 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Fae PF08714.11 gi|336476217|ref|YP_004615358.1| - 1.8e-71 239.2 0.5 4e-71 238.1 0.5 1.6 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|336476217|ref|YP_004615358.1| - 2.6e-25 89.4 0.3 8.3e-25 87.7 0.1 1.9 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|336476217|ref|YP_004615358.1| - 9.5e-06 25.1 0.3 6.3e-05 22.4 0.3 2.3 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 gi|336476217|ref|YP_004615358.1| - 0.001 18.9 0.0 0.0024 17.7 0.0 1.6 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PcrB PF01884.17 gi|336476217|ref|YP_004615358.1| - 0.01 15.3 0.6 0.14 11.6 0.2 2.2 2 0 0 2 2 2 0 PcrB family TMP-TENI PF02581.17 gi|336476217|ref|YP_004615358.1| - 0.056 12.8 0.4 0.25 10.7 0.2 2.0 2 0 0 2 2 2 0 Thiamine monophosphate synthase 3H PF02829.14 gi|336476217|ref|YP_004615358.1| - 0.15 12.4 0.0 0.35 11.2 0.0 1.6 1 0 0 1 1 1 0 3H domain TIM PF00121.18 gi|336476218|ref|YP_004615359.1| - 6.2e-11 42.1 0.0 8.5e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|336476218|ref|YP_004615359.1| - 0.00048 19.5 0.2 0.00048 19.5 0.2 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|336476218|ref|YP_004615359.1| - 0.004 16.6 2.0 0.004 16.6 2.0 2.0 1 1 1 2 2 2 1 Nitronate monooxygenase Hydrolase_like PF13242.6 gi|336476218|ref|YP_004615359.1| - 0.056 13.5 0.1 4.8 7.3 0.0 2.3 2 0 0 2 2 2 0 HAD-hyrolase-like PDH PF02153.17 gi|336476219|ref|YP_004615360.1| - 2.7e-56 190.4 0.0 4.9e-56 189.6 0.0 1.4 2 0 0 2 2 2 1 Prephenate dehydrogenase NAD_binding_2 PF03446.15 gi|336476219|ref|YP_004615360.1| - 4.9e-09 36.6 0.0 1.2e-08 35.3 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|336476219|ref|YP_004615360.1| - 2.3e-08 33.6 0.0 4.3e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|336476219|ref|YP_004615360.1| - 1.5e-07 31.9 0.0 3.8e-07 30.6 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|336476219|ref|YP_004615360.1| - 0.00018 21.1 0.0 0.00031 20.4 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 gi|336476219|ref|YP_004615360.1| - 0.00018 21.5 1.3 0.067 13.2 0.1 2.6 1 1 1 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding PF02629.19 gi|336476219|ref|YP_004615360.1| - 0.012 16.3 0.0 0.1 13.3 0.0 2.3 2 0 0 2 2 2 0 CoA binding domain 3HCDH_N PF02737.18 gi|336476219|ref|YP_004615360.1| - 0.023 14.6 0.1 3.7 7.4 0.0 2.4 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|336476219|ref|YP_004615360.1| - 0.069 12.8 0.0 0.26 10.9 0.0 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DpaA_N PF16924.5 gi|336476219|ref|YP_004615360.1| - 0.12 12.4 0.0 0.3 11.2 0.0 1.8 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain GFO_IDH_MocA PF01408.22 gi|336476219|ref|YP_004615360.1| - 0.13 13.1 0.0 0.34 11.8 0.0 1.8 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Shikimate_dh_N PF08501.11 gi|336476220|ref|YP_004615361.1| - 1.4e-26 92.6 0.1 9.6e-26 89.9 0.0 2.3 3 0 0 3 3 3 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|336476220|ref|YP_004615361.1| - 2.3e-14 53.6 0.1 4e-14 52.9 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|336476220|ref|YP_004615361.1| - 2.5e-14 52.7 0.2 4.5e-14 51.9 0.2 1.5 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain F420_oxidored PF03807.17 gi|336476220|ref|YP_004615361.1| - 5e-06 27.0 0.3 8.7e-06 26.2 0.3 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|336476220|ref|YP_004615361.1| - 5.7e-05 23.4 0.5 9.8e-05 22.6 0.5 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|336476220|ref|YP_004615361.1| - 0.00037 20.0 1.3 0.0008 18.9 1.3 1.6 1 1 0 1 1 1 1 short chain dehydrogenase AlaDh_PNT_C PF01262.21 gi|336476220|ref|YP_004615361.1| - 0.00042 19.7 0.3 0.00066 19.0 0.3 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain THF_DHG_CYH_C PF02882.19 gi|336476220|ref|YP_004615361.1| - 0.00065 19.0 0.2 1 8.6 0.0 2.3 1 1 1 2 2 2 2 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|336476220|ref|YP_004615361.1| - 0.0015 18.0 0.1 0.0025 17.2 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|336476220|ref|YP_004615361.1| - 0.0016 18.8 0.1 0.0025 18.2 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.12 gi|336476220|ref|YP_004615361.1| - 0.039 13.5 1.9 0.047 13.3 0.4 2.0 2 1 1 3 3 3 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|336476220|ref|YP_004615361.1| - 0.054 13.1 0.2 0.092 12.4 0.2 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|336476220|ref|YP_004615361.1| - 0.069 13.3 0.2 0.11 12.6 0.2 1.4 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_3 PF13738.6 gi|336476220|ref|YP_004615361.1| - 0.074 12.3 0.0 0.099 11.9 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|336476220|ref|YP_004615361.1| - 0.12 12.6 0.7 0.22 11.8 0.7 1.4 1 0 0 1 1 1 0 TrkA-N domain HigB_toxin PF09907.9 gi|336476220|ref|YP_004615361.1| - 0.18 12.1 0.0 25 5.2 0.0 2.4 2 0 0 2 2 2 0 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system DHquinase_I PF01487.15 gi|336476221|ref|YP_004615362.1| - 7.9e-55 186.6 0.2 8.9e-55 186.4 0.2 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase AP_endonuc_2 PF01261.24 gi|336476221|ref|YP_004615362.1| - 0.098 12.1 0.0 0.17 11.3 0.0 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel DHQS PF01959.16 gi|336476222|ref|YP_004615363.1| - 2.8e-150 500.1 2.9 3.1e-150 500.0 2.9 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II OapA PF04225.12 gi|336476222|ref|YP_004615363.1| - 0.0037 17.3 0.1 1.7 8.8 0.1 2.4 2 0 0 2 2 2 2 Opacity-associated protein A LysM-like domain QRPTase_C PF01729.19 gi|336476222|ref|YP_004615363.1| - 0.031 14.0 3.2 0.47 10.2 0.0 3.2 3 1 0 3 3 3 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF1953 PF09196.10 gi|336476222|ref|YP_004615363.1| - 0.033 14.0 0.4 0.5 10.2 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1953) DeoC PF01791.9 gi|336476223|ref|YP_004615364.1| - 1.7e-61 207.8 0.0 2e-61 207.6 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|336476223|ref|YP_004615364.1| - 0.024 14.3 0.1 0.037 13.6 0.1 1.3 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF561 PF04481.12 gi|336476223|ref|YP_004615364.1| - 0.061 12.5 0.1 0.13 11.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) ThiG PF05690.14 gi|336476223|ref|YP_004615364.1| - 0.14 11.4 0.1 0.14 11.4 0.1 2.2 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG PE PF00934.20 gi|336476223|ref|YP_004615364.1| - 0.32 11.4 2.2 1 9.8 0.0 2.5 4 0 0 4 4 4 0 PE family ATPase PF06745.13 gi|336476224|ref|YP_004615365.1| - 8.8e-80 267.4 2.4 1.2e-48 165.5 1.0 2.2 2 0 0 2 2 2 2 KaiC DnaB_C PF03796.15 gi|336476224|ref|YP_004615365.1| - 4e-09 36.2 0.0 0.00046 19.6 0.0 2.4 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|336476224|ref|YP_004615365.1| - 1.4e-08 34.6 0.0 0.00023 20.8 0.0 2.5 2 1 0 2 2 2 2 AAA domain GvpD PF07088.11 gi|336476224|ref|YP_004615365.1| - 4.5e-06 25.6 1.5 0.054 12.1 0.0 3.0 2 1 1 3 3 3 2 GvpD gas vesicle protein Rad51 PF08423.11 gi|336476224|ref|YP_004615365.1| - 1.1e-05 24.9 0.5 0.075 12.3 0.0 2.4 2 0 0 2 2 2 2 Rad51 AAA_19 PF13245.6 gi|336476224|ref|YP_004615365.1| - 4.6e-05 23.8 0.8 0.021 15.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain RecA PF00154.21 gi|336476224|ref|YP_004615365.1| - 6.5e-05 22.5 0.5 0.32 10.4 0.0 3.1 3 0 0 3 3 3 2 recA bacterial DNA recombination protein T2SSE PF00437.20 gi|336476224|ref|YP_004615365.1| - 0.00022 20.4 0.7 0.059 12.4 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein DUF2075 PF09848.9 gi|336476224|ref|YP_004615365.1| - 0.00024 20.5 0.1 0.3 10.3 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) TrmB PF01978.19 gi|336476224|ref|YP_004615365.1| - 0.0014 18.5 0.1 0.0044 16.9 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AAA_16 PF13191.6 gi|336476224|ref|YP_004615365.1| - 0.0014 19.0 0.1 2.6 8.4 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain ATP-synt_ab PF00006.25 gi|336476224|ref|YP_004615365.1| - 0.0017 18.1 0.0 0.051 13.2 0.0 2.2 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.6 gi|336476224|ref|YP_004615365.1| - 0.0017 18.1 1.0 0.18 11.5 0.0 2.8 3 0 0 3 3 3 1 AAA domain Sigma54_activat PF00158.26 gi|336476224|ref|YP_004615365.1| - 0.0057 16.4 0.1 1.9 8.2 0.0 3.1 3 0 0 3 3 3 1 Sigma-54 interaction domain NACHT PF05729.12 gi|336476224|ref|YP_004615365.1| - 0.015 15.2 0.4 6 6.8 0.1 2.7 2 0 0 2 2 2 0 NACHT domain HTH_34 PF13601.6 gi|336476224|ref|YP_004615365.1| - 0.016 15.4 0.2 1.5 9.1 0.0 2.7 2 1 0 2 2 2 0 Winged helix DNA-binding domain PhoH PF02562.16 gi|336476224|ref|YP_004615365.1| - 0.023 14.2 0.3 7 6.0 0.1 2.4 2 0 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.6 gi|336476224|ref|YP_004615365.1| - 0.024 14.4 0.3 0.58 9.8 0.2 2.6 2 1 0 2 2 2 0 AAA domain PAXNEB PF05625.11 gi|336476224|ref|YP_004615365.1| - 0.026 13.7 0.4 0.49 9.5 0.0 2.4 2 0 0 2 2 2 0 PAXNEB protein TFIIE_alpha PF02002.17 gi|336476224|ref|YP_004615365.1| - 0.038 13.8 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 TFIIE alpha subunit IstB_IS21 PF01695.17 gi|336476224|ref|YP_004615365.1| - 0.041 13.6 0.0 6.1 6.5 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|336476224|ref|YP_004615365.1| - 0.044 13.3 0.8 6.9 6.1 0.1 2.5 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|336476224|ref|YP_004615365.1| - 0.11 12.7 1.8 13 6.0 0.0 2.9 3 1 0 3 3 3 0 AAA domain Sulfolobus_pRN PF05584.11 gi|336476224|ref|YP_004615365.1| - 0.13 12.3 0.3 0.49 10.5 0.1 2.1 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein MEDS PF14417.6 gi|336476224|ref|YP_004615365.1| - 0.14 12.0 0.0 2.3 8.0 0.0 2.3 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain UvrD-helicase PF00580.21 gi|336476224|ref|YP_004615365.1| - 1.4 8.4 4.8 1.9 7.9 0.8 2.5 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain GATase PF00117.28 gi|336476225|ref|YP_004615366.1| - 1.2e-36 126.2 0.0 1.4e-36 126.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|336476225|ref|YP_004615366.1| - 8.2e-10 38.8 1.0 4.9e-08 33.0 0.4 2.8 1 1 0 2 2 2 1 Peptidase C26 SRP54 PF00448.22 gi|336476226|ref|YP_004615367.1| - 3.6e-72 242.1 0.0 6.3e-72 241.3 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|336476226|ref|YP_004615367.1| - 4.3e-28 97.9 2.7 4.3e-28 97.9 2.7 2.4 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|336476226|ref|YP_004615367.1| - 8.3e-21 74.0 0.8 3.5e-20 72.0 0.8 2.2 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|336476226|ref|YP_004615367.1| - 2.2e-05 24.5 0.0 6.5e-05 23.0 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|336476226|ref|YP_004615367.1| - 5e-05 23.0 0.2 0.0003 20.4 0.2 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain 6PF2K PF01591.18 gi|336476226|ref|YP_004615367.1| - 0.00058 19.2 0.0 0.0011 18.3 0.0 1.5 1 0 0 1 1 1 1 6-phosphofructo-2-kinase Zeta_toxin PF06414.12 gi|336476226|ref|YP_004615367.1| - 0.00091 18.6 0.0 0.002 17.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin GTP_EFTU PF00009.27 gi|336476226|ref|YP_004615367.1| - 0.0018 17.9 0.2 0.0088 15.6 0.2 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.17 gi|336476226|ref|YP_004615367.1| - 0.0054 16.5 0.1 0.04 13.7 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|336476226|ref|YP_004615367.1| - 0.0064 15.5 0.0 0.016 14.2 0.0 1.6 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|336476226|ref|YP_004615367.1| - 0.0071 16.5 0.0 0.023 14.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain TFIIA_gamma_N PF02268.16 gi|336476226|ref|YP_004615367.1| - 0.0074 16.3 0.2 0.043 13.8 0.0 2.3 2 0 0 2 2 2 1 Transcription initiation factor IIA, gamma subunit, helical domain APS_kinase PF01583.20 gi|336476226|ref|YP_004615367.1| - 0.0092 15.9 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase Thymidylate_kin PF02223.17 gi|336476226|ref|YP_004615367.1| - 0.011 15.5 0.4 0.054 13.2 0.1 2.2 2 0 0 2 2 2 0 Thymidylate kinase DUF4919 PF16266.5 gi|336476226|ref|YP_004615367.1| - 0.012 15.6 0.8 0.44 10.5 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4919) MobB PF03205.14 gi|336476226|ref|YP_004615367.1| - 0.014 15.3 0.1 0.031 14.2 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.9 gi|336476226|ref|YP_004615367.1| - 0.015 14.3 0.0 0.026 13.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PduV-EutP PF10662.9 gi|336476226|ref|YP_004615367.1| - 0.018 14.8 2.2 0.29 10.9 0.5 2.5 1 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation G-alpha PF00503.20 gi|336476226|ref|YP_004615367.1| - 0.021 14.0 0.0 0.048 12.8 0.0 1.8 1 1 0 1 1 1 0 G-protein alpha subunit MMR_HSR1 PF01926.23 gi|336476226|ref|YP_004615367.1| - 0.023 14.8 0.2 0.16 12.1 0.2 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|336476226|ref|YP_004615367.1| - 0.025 14.3 0.1 0.074 12.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|336476226|ref|YP_004615367.1| - 0.029 14.7 0.0 0.047 14.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|336476226|ref|YP_004615367.1| - 0.03 14.6 0.2 0.12 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain LpxK PF02606.14 gi|336476226|ref|YP_004615367.1| - 0.033 13.3 0.1 0.058 12.5 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_22 PF13401.6 gi|336476226|ref|YP_004615367.1| - 0.037 14.3 0.0 0.12 12.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|336476226|ref|YP_004615367.1| - 0.041 14.4 0.1 0.13 12.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|336476226|ref|YP_004615367.1| - 0.044 13.2 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF3684 PF12449.8 gi|336476226|ref|YP_004615367.1| - 0.23 9.2 0.3 0.3 8.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3684) Pribosyltran PF00156.27 gi|336476227|ref|YP_004615368.1| - 1.1e-16 60.8 0.0 2.9e-16 59.4 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|336476227|ref|YP_004615368.1| - 0.1 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 gi|336476227|ref|YP_004615368.1| - 0.13 12.3 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain PNP_UDP_1 PF01048.20 gi|336476228|ref|YP_004615369.1| - 2.7e-43 147.9 0.0 3.1e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HEAT_2 PF13646.6 gi|336476229|ref|YP_004615370.1| - 2.1e-131 428.7 40.7 3.2e-18 65.9 0.2 13.2 3 3 8 13 13 13 13 HEAT repeats HEAT_PBS PF03130.16 gi|336476229|ref|YP_004615370.1| - 9.4e-79 252.2 16.2 0.00023 21.5 0.0 23.1 24 0 0 24 24 23 13 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|336476229|ref|YP_004615370.1| - 5.7e-62 200.4 13.9 0.0067 16.6 0.0 20.6 21 0 0 21 21 20 15 HEAT repeat HEAT_EZ PF13513.6 gi|336476229|ref|YP_004615370.1| - 3.3e-40 136.0 28.5 0.022 15.3 0.1 19.4 20 1 1 21 21 21 9 HEAT-like repeat Arm PF00514.23 gi|336476229|ref|YP_004615370.1| - 2.9e-26 90.6 0.3 0.11 12.5 0.0 15.0 11 3 6 17 17 17 4 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|336476229|ref|YP_004615370.1| - 2.6e-23 82.8 14.9 4.4e-05 23.6 0.0 11.7 5 4 6 12 12 12 5 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.7 gi|336476229|ref|YP_004615370.1| - 5.4e-16 59.0 1.3 0.14 12.8 0.0 13.1 4 4 10 14 14 14 1 Vacuolar 14 Fab1-binding region Aconitase_B_N PF11791.8 gi|336476229|ref|YP_004615370.1| - 3e-11 43.6 1.8 9.4 6.3 0.0 11.1 4 3 7 14 14 14 0 Aconitate B N-terminal domain Adaptin_N PF01602.20 gi|336476229|ref|YP_004615370.1| - 1.4e-10 40.4 2.9 0.0097 14.5 0.1 6.1 3 2 2 6 6 6 3 Adaptin N terminal region IFRD PF05004.13 gi|336476229|ref|YP_004615370.1| - 2.3e-07 30.2 8.8 4.5 6.3 0.0 8.0 4 3 3 8 8 8 3 Interferon-related developmental regulator (IFRD) RasGEF_N_2 PF14663.6 gi|336476229|ref|YP_004615370.1| - 0.00022 21.6 3.3 15 6.1 0.0 7.6 6 2 2 9 9 7 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain ERAP1_C PF11838.8 gi|336476229|ref|YP_004615370.1| - 0.00024 20.7 6.3 0.046 13.2 0.1 4.7 1 1 3 5 5 5 1 ERAP1-like C-terminal domain UCR_Fe-S_N PF10399.9 gi|336476229|ref|YP_004615370.1| - 0.0025 17.1 0.0 11 5.5 0.0 6.0 6 0 0 6 6 6 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TetR_C_16 PF17920.1 gi|336476229|ref|YP_004615370.1| - 0.0047 17.1 6.7 81 3.5 0.0 7.7 6 3 2 8 8 8 0 Tetracyclin repressor-like, C-terminal domain V-ATPase_H_C PF11698.8 gi|336476229|ref|YP_004615370.1| - 0.0098 16.0 2.5 3.7 7.7 0.0 6.0 6 2 1 7 7 7 1 V-ATPase subunit H Matrix PF00661.21 gi|336476229|ref|YP_004615370.1| - 0.016 13.9 0.0 0.11 11.2 0.0 2.3 2 1 0 2 2 2 0 Viral matrix protein RICTOR_V PF14668.6 gi|336476229|ref|YP_004615370.1| - 0.019 15.2 0.0 7.4 6.9 0.0 4.6 6 0 0 6 6 6 0 Rapamycin-insensitive companion of mTOR, domain 5 CLASP_N PF12348.8 gi|336476229|ref|YP_004615370.1| - 0.053 13.1 3.3 55 3.2 0.0 5.4 3 2 3 7 7 7 0 CLASP N terminal IBN_N PF03810.19 gi|336476229|ref|YP_004615370.1| - 0.14 12.1 0.2 41 4.2 0.1 4.1 3 1 0 3 3 3 0 Importin-beta N-terminal domain DUF4284 PF14112.6 gi|336476229|ref|YP_004615370.1| - 0.16 12.9 0.1 0.39 11.7 0.1 1.6 1 0 0 1 1 1 0 Immunity protein 22 HTH_3 PF01381.22 gi|336476230|ref|YP_004615371.1| - 2.8e-06 27.3 0.0 6.2e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix PrpR_N PF06506.11 gi|336476230|ref|YP_004615371.1| - 0.00033 20.3 0.3 0.00085 18.9 0.2 1.7 2 0 0 2 2 2 1 Propionate catabolism activator HTH_26 PF13443.6 gi|336476230|ref|YP_004615371.1| - 0.00069 20.0 0.0 0.0015 19.0 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 gi|336476230|ref|YP_004615371.1| - 0.017 15.2 0.0 0.06 13.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain AAA-ATPase_like PF09820.9 gi|336476230|ref|YP_004615371.1| - 0.03 13.7 0.0 0.04 13.3 0.0 1.1 1 0 0 1 1 1 0 Predicted AAA-ATPase NMT1_2 PF13379.6 gi|336476231|ref|YP_004615372.1| - 1.5e-39 136.3 0.0 2e-39 135.8 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|336476231|ref|YP_004615372.1| - 5.2e-20 72.3 0.0 7.8e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|336476231|ref|YP_004615372.1| - 1.2e-07 31.6 0.0 1.8e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 gi|336476231|ref|YP_004615372.1| - 0.00074 19.0 0.0 0.014 14.8 0.0 2.2 1 1 1 2 2 2 1 NMT1-like family LysR_substrate PF03466.20 gi|336476231|ref|YP_004615372.1| - 0.0029 17.0 0.0 0.005 16.2 0.0 1.4 1 0 0 1 1 1 1 LysR substrate binding domain DctP PF03480.13 gi|336476231|ref|YP_004615372.1| - 0.014 14.7 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 BPD_transp_1 PF00528.22 gi|336476232|ref|YP_004615373.1| - 7e-21 74.8 9.1 7e-21 74.8 9.1 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|336476233|ref|YP_004615374.1| - 6e-33 114.3 0.0 9.5e-33 113.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336476233|ref|YP_004615374.1| - 2.2e-09 37.5 0.0 0.00048 20.0 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|336476233|ref|YP_004615374.1| - 9.9e-07 29.3 2.1 9.1e-06 26.1 0.6 2.7 1 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|336476233|ref|YP_004615374.1| - 5.9e-05 23.4 0.3 0.00031 21.0 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336476233|ref|YP_004615374.1| - 0.00023 21.6 0.2 0.0018 18.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|336476233|ref|YP_004615374.1| - 0.00044 20.2 0.0 0.00088 19.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 gi|336476233|ref|YP_004615374.1| - 0.00098 19.3 0.0 0.003 17.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|336476233|ref|YP_004615374.1| - 0.0032 17.7 0.6 0.021 15.1 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|336476233|ref|YP_004615374.1| - 0.0042 17.1 0.1 0.011 15.8 0.1 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|336476233|ref|YP_004615374.1| - 0.0099 15.3 0.0 0.029 13.7 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|336476233|ref|YP_004615374.1| - 0.011 15.6 0.1 0.029 14.3 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain NACHT PF05729.12 gi|336476233|ref|YP_004615374.1| - 0.013 15.5 0.2 0.037 13.9 0.1 1.8 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.6 gi|336476233|ref|YP_004615374.1| - 0.018 15.6 0.0 0.035 14.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|336476233|ref|YP_004615374.1| - 0.023 14.1 0.0 6.1 6.2 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336476233|ref|YP_004615374.1| - 0.025 14.3 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|336476233|ref|YP_004615374.1| - 0.029 14.9 0.4 0.064 13.8 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|336476233|ref|YP_004615374.1| - 0.03 14.0 0.1 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain ATPase_2 PF01637.18 gi|336476233|ref|YP_004615374.1| - 0.039 13.9 0.0 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|336476233|ref|YP_004615374.1| - 0.049 12.8 0.5 0.33 10.1 0.0 2.3 3 0 0 3 3 3 0 NB-ARC domain IstB_IS21 PF01695.17 gi|336476233|ref|YP_004615374.1| - 0.053 13.3 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|336476233|ref|YP_004615374.1| - 0.059 12.9 0.0 0.14 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|336476233|ref|YP_004615374.1| - 0.075 12.5 0.1 0.23 10.9 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region PduV-EutP PF10662.9 gi|336476233|ref|YP_004615374.1| - 0.075 12.8 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.6 gi|336476233|ref|YP_004615374.1| - 0.078 12.7 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|336476233|ref|YP_004615374.1| - 0.084 12.9 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 gi|336476233|ref|YP_004615374.1| - 0.095 13.0 0.0 0.2 11.9 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|336476233|ref|YP_004615374.1| - 0.16 11.6 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain T4SS-DNA_transf PF02534.14 gi|336476233|ref|YP_004615374.1| - 0.17 10.6 0.0 0.26 10.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer Bactofilin PF04519.13 gi|336476234|ref|YP_004615375.1| - 4.8e-05 23.6 1.0 8.7e-05 22.7 0.3 1.8 1 1 0 1 1 1 1 Polymer-forming cytoskeletal TED_complement PF07678.14 gi|336476235|ref|YP_004615376.1| - 0.004 16.2 0.6 0.025 13.6 0.6 2.1 1 1 1 2 2 2 1 A-macroglobulin TED domain SQHop_cyclase_C PF13243.6 gi|336476235|ref|YP_004615376.1| - 0.018 14.2 0.4 0.68 9.0 0.1 2.4 1 1 1 2 2 2 0 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|336476235|ref|YP_004615376.1| - 1.2 9.0 5.4 1.9 8.3 0.2 2.8 3 0 0 3 3 3 0 Prenyltransferase and squalene oxidase repeat NRDD PF13597.6 gi|336476236|ref|YP_004615377.1| - 9.5e-148 493.4 0.0 1.1e-147 493.3 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Ribosomal_L31 PF01197.18 gi|336476236|ref|YP_004615377.1| - 0.15 12.3 0.0 0.39 11.0 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein L31 ParA PF10609.9 gi|336476237|ref|YP_004615378.1| - 2.1e-91 305.8 0.1 2.5e-91 305.5 0.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|336476237|ref|YP_004615378.1| - 3.4e-12 46.5 0.0 1.2e-11 44.8 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|336476237|ref|YP_004615378.1| - 1.5e-10 41.2 0.2 1.1e-08 35.2 0.2 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|336476237|ref|YP_004615378.1| - 1.5e-09 37.5 0.0 2.2e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|336476237|ref|YP_004615378.1| - 6.2e-08 32.2 0.2 2.8e-07 30.0 0.1 1.9 1 1 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|336476237|ref|YP_004615378.1| - 3.5e-07 29.9 0.1 0.017 14.5 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|336476237|ref|YP_004615378.1| - 1.3e-06 28.4 1.5 0.0037 17.1 0.1 2.3 2 0 0 2 2 2 2 AAA domain APS_kinase PF01583.20 gi|336476237|ref|YP_004615378.1| - 9.6e-05 22.3 0.0 0.00015 21.7 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase RsgA_GTPase PF03193.16 gi|336476237|ref|YP_004615378.1| - 0.00024 21.1 0.6 0.0005 20.0 0.3 1.7 2 0 0 2 2 2 1 RsgA GTPase CLP1_P PF16575.5 gi|336476237|ref|YP_004615378.1| - 0.00057 19.7 0.0 0.0036 17.1 0.0 2.0 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|336476237|ref|YP_004615378.1| - 0.0021 17.7 0.0 0.0034 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336476237|ref|YP_004615378.1| - 0.0035 17.7 0.0 0.006 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain MeaB PF03308.16 gi|336476237|ref|YP_004615378.1| - 0.0051 15.8 0.1 0.015 14.3 0.1 1.6 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB VirC1 PF07015.11 gi|336476237|ref|YP_004615378.1| - 0.006 15.9 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein Rad17 PF03215.15 gi|336476237|ref|YP_004615378.1| - 0.0083 16.1 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain SRP54 PF00448.22 gi|336476237|ref|YP_004615378.1| - 0.0084 15.8 0.2 0.022 14.4 0.1 1.8 2 1 0 2 2 1 1 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 gi|336476237|ref|YP_004615378.1| - 0.013 15.0 0.5 2 7.9 0.5 2.2 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ NB-ARC PF00931.22 gi|336476237|ref|YP_004615378.1| - 0.015 14.5 0.1 0.024 13.8 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|336476237|ref|YP_004615378.1| - 0.016 15.7 0.0 0.028 15.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|336476237|ref|YP_004615378.1| - 0.026 14.9 0.0 0.066 13.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|336476237|ref|YP_004615378.1| - 0.033 13.9 0.1 0.065 12.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|336476237|ref|YP_004615378.1| - 0.034 14.1 0.2 0.056 13.3 0.2 1.3 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|336476237|ref|YP_004615378.1| - 0.04 13.2 0.1 0.082 12.2 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.15 gi|336476237|ref|YP_004615378.1| - 0.047 13.6 0.1 0.094 12.6 0.1 1.4 1 0 0 1 1 1 0 NTPase AAA_33 PF13671.6 gi|336476237|ref|YP_004615378.1| - 0.053 13.7 0.0 0.082 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|336476237|ref|YP_004615378.1| - 0.061 12.4 0.1 0.1 11.6 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.14 gi|336476237|ref|YP_004615378.1| - 0.066 13.1 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.17 gi|336476237|ref|YP_004615378.1| - 0.076 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein KTI12 PF08433.10 gi|336476237|ref|YP_004615378.1| - 0.092 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TsaE PF02367.17 gi|336476237|ref|YP_004615378.1| - 0.094 12.7 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|336476237|ref|YP_004615378.1| - 0.094 12.4 0.1 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|336476237|ref|YP_004615378.1| - 0.1 12.9 0.1 0.33 11.2 0.1 1.9 3 0 0 3 3 1 0 AAA domain DUF21 PF01595.20 gi|336476238|ref|YP_004615379.1| - 2.1e-35 122.0 1.7 3e-35 121.5 1.7 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain DUF21 PF01595.20 gi|336476239|ref|YP_004615380.1| - 2e-33 115.6 3.8 2.8e-33 115.1 3.8 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain AIRS PF00586.24 gi|336476240|ref|YP_004615381.1| - 6.6e-22 78.0 3.4 1.2e-21 77.2 3.4 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|336476240|ref|YP_004615381.1| - 1.3e-09 38.4 0.0 2.1e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain S-layer PF07752.11 gi|336476241|ref|YP_004615382.1| - 5.1e-195 645.1 15.8 9.5e-98 326.3 3.0 2.6 2 0 0 2 2 2 2 S-layer protein CBM_X2 PF03442.14 gi|336476241|ref|YP_004615382.1| - 1.7e-59 197.9 27.4 1e-20 73.6 4.4 4.4 4 0 0 4 4 4 3 Carbohydrate binding domain X2 CARDB PF07705.11 gi|336476241|ref|YP_004615382.1| - 5.4e-08 33.0 0.8 5.4e-08 33.0 0.8 3.7 2 1 2 4 4 4 1 CARDB CarboxypepD_reg PF13620.6 gi|336476241|ref|YP_004615382.1| - 2.2e-05 24.6 3.4 0.042 14.1 0.9 3.9 2 1 1 3 3 3 2 Carboxypeptidase regulatory-like domain DUF3284 PF11687.8 gi|336476241|ref|YP_004615382.1| - 0.00022 21.1 7.5 0.19 11.6 0.3 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF3284) CarbopepD_reg_2 PF13715.6 gi|336476241|ref|YP_004615382.1| - 0.0005 20.0 0.1 0.67 10.0 0.1 3.5 2 0 0 2 2 2 1 CarboxypepD_reg-like domain PEGA PF08308.11 gi|336476241|ref|YP_004615382.1| - 0.014 15.2 3.6 1.2 9.1 0.0 4.0 3 1 1 4 4 4 0 PEGA domain TIG PF01833.24 gi|336476241|ref|YP_004615382.1| - 0.04 14.0 1.6 13 5.9 0.2 3.7 2 0 0 2 2 2 0 IPT/TIG domain tRNA-synt_1c_C PF03950.18 gi|336476241|ref|YP_004615382.1| - 0.065 13.1 3.0 5.6 6.8 0.0 3.9 4 0 0 4 4 4 0 tRNA synthetases class I (E and Q), anti-codon binding domain Chordopox_A30L PF06015.12 gi|336476241|ref|YP_004615382.1| - 0.071 12.9 2.5 30 4.5 0.1 3.5 3 0 0 3 3 3 0 Chordopoxvirus A30L protein PapC_N PF13954.6 gi|336476241|ref|YP_004615382.1| - 0.1 12.6 0.4 2.3 8.2 0.0 3.0 3 0 0 3 3 3 0 PapC N-terminal domain DUF4253 PF14062.6 gi|336476241|ref|YP_004615382.1| - 0.22 11.7 0.2 36 4.6 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4253) TrbC PF04956.13 gi|336476241|ref|YP_004615382.1| - 1.7 8.9 4.4 11 6.3 0.2 2.4 2 0 0 2 2 2 0 TrbC/VIRB2 family Peptidase_M1 PF01433.20 gi|336476242|ref|YP_004615383.1| - 1.8e-05 24.4 0.1 5.1e-05 23.0 0.1 1.8 2 0 0 2 2 2 1 Peptidase family M1 domain Peptidase_M66 PF10462.9 gi|336476242|ref|YP_004615383.1| - 0.016 14.1 0.1 0.031 13.2 0.1 1.4 1 0 0 1 1 1 0 Peptidase M66 Cupredoxin_1 PF13473.6 gi|336476242|ref|YP_004615383.1| - 0.021 14.9 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 Cupredoxin-like domain EF-hand_6 PF13405.6 gi|336476243|ref|YP_004615384.1| - 0.18 11.8 8.0 1.2e+02 3.0 0.0 6.6 7 0 0 7 7 7 0 EF-hand domain DUF11 PF01345.18 gi|336476244|ref|YP_004615385.1| - 9.8e-17 61.1 17.7 1.3e-06 28.6 1.0 3.9 4 0 0 4 4 4 3 Domain of unknown function DUF11 bMG10 PF17973.1 gi|336476244|ref|YP_004615385.1| - 6.1e-08 32.9 0.2 0.83 9.9 0.0 3.6 3 0 0 3 3 3 3 Bacterial Alpha-2-macroglobulin MG10 domain A2M PF00207.22 gi|336476244|ref|YP_004615385.1| - 9.1e-06 25.4 0.1 2.1 8.3 0.0 3.5 3 0 0 3 3 3 2 Alpha-2-macroglobulin family BatD PF13584.6 gi|336476244|ref|YP_004615385.1| - 0.00015 20.8 2.8 0.44 9.3 0.1 3.2 3 0 0 3 3 3 3 Oxygen tolerance DUF4923 PF16270.5 gi|336476244|ref|YP_004615385.1| - 0.0051 16.6 0.0 2.1 8.1 0.0 2.7 2 0 0 2 2 2 2 Lipocalin-like domain (DUF4923) Longin PF13774.6 gi|336476244|ref|YP_004615385.1| - 0.021 14.8 0.0 4.9 7.3 0.0 2.5 2 0 0 2 2 2 0 Regulated-SNARE-like domain ASH PF15780.5 gi|336476244|ref|YP_004615385.1| - 0.041 14.1 0.4 4.9 7.4 0.0 3.2 3 0 0 3 3 3 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin YbbR PF07949.12 gi|336476244|ref|YP_004615385.1| - 0.043 14.2 8.3 2.2 8.7 0.2 4.3 2 2 1 3 3 3 0 YbbR-like protein HTH_45 PF14947.6 gi|336476247|ref|YP_004615388.1| - 1.4e-23 82.7 2.5 1.7e-23 82.4 2.5 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|336476247|ref|YP_004615388.1| - 0.0031 17.3 0.2 0.0033 17.2 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TRAP_beta PF05753.14 gi|336476250|ref|YP_004615391.1| - 0.087 12.2 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) TisB_toxin PF13939.6 gi|336476250|ref|YP_004615391.1| - 1 9.2 3.2 1.8 8.4 3.2 1.4 1 0 0 1 1 1 0 Toxin TisB, type I toxin-antitoxin system Exosortase_EpsH PF09721.10 gi|336476251|ref|YP_004615392.1| - 2.3e-12 47.0 8.1 3.1e-12 46.6 8.1 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) DHHC PF01529.20 gi|336476252|ref|YP_004615393.1| - 2.8 8.1 8.0 6 7.0 8.0 1.6 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF63 PF01889.17 gi|336476254|ref|YP_004615395.1| - 0.0029 17.9 2.9 0.0033 17.7 2.9 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 OppC_N PF12911.7 gi|336476254|ref|YP_004615395.1| - 1.9 8.5 4.8 24 5.0 0.1 3.1 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF11 PF01345.18 gi|336476255|ref|YP_004615396.1| - 3e-23 81.9 66.5 0.00018 21.7 1.8 7.7 7 0 0 7 7 7 7 Domain of unknown function DUF11 CARDB PF07705.11 gi|336476255|ref|YP_004615396.1| - 9.5e-12 45.1 43.1 0.023 14.9 1.1 7.4 7 0 0 7 7 7 5 CARDB DUF1416 PF07210.12 gi|336476255|ref|YP_004615396.1| - 1.2e-09 37.9 11.2 4.1 7.3 0.0 6.6 6 0 0 6 6 6 5 Protein of unknown function (DUF1416) DUF1573 PF07610.11 gi|336476255|ref|YP_004615396.1| - 1.2e-09 38.1 11.2 5.1 7.2 0.1 7.3 7 0 0 7 7 7 2 Protein of unknown function (DUF1573) NPCBM_assoc PF10633.9 gi|336476255|ref|YP_004615396.1| - 7.3e-06 26.2 27.8 1.5 9.2 0.2 8.1 7 1 0 7 7 7 2 NPCBM-associated, NEW3 domain of alpha-galactosidase LTD PF00932.19 gi|336476255|ref|YP_004615396.1| - 8.5e-06 26.1 19.6 1 9.7 0.2 6.1 6 0 0 6 6 6 4 Lamin Tail Domain Enolase_N PF03952.16 gi|336476255|ref|YP_004615396.1| - 1.1e-05 25.6 4.8 33 4.7 0.0 6.4 7 0 0 7 7 6 0 Enolase, N-terminal domain N_BRCA1_IG PF16158.5 gi|336476255|ref|YP_004615396.1| - 9.2e-05 23.1 11.0 46 4.8 0.1 7.0 7 0 0 7 7 7 0 Ig-like domain from next to BRCA1 gene TRAP_beta PF05753.14 gi|336476255|ref|YP_004615396.1| - 0.00092 18.7 28.1 8.7 5.7 0.2 7.9 7 0 0 7 7 7 5 Translocon-associated protein beta (TRAPB) Peptidase_M73 PF12389.8 gi|336476255|ref|YP_004615396.1| - 0.0037 17.1 11.8 27 4.5 0.1 6.2 6 0 0 6 6 6 0 Camelysin metallo-endopeptidase DUF2393 PF09624.10 gi|336476255|ref|YP_004615396.1| - 0.014 15.4 12.3 31 4.5 0.1 6.6 7 0 0 7 7 7 0 Protein of unknown function (DUF2393) DUF515 PF04415.12 gi|336476255|ref|YP_004615396.1| - 0.018 13.4 1.7 32 2.7 0.0 4.2 5 0 0 5 5 5 0 Protein of unknown function (DUF515) Arrestin_C PF02752.22 gi|336476255|ref|YP_004615396.1| - 0.072 13.5 4.2 1e+02 3.3 0.0 5.5 6 0 0 6 6 6 0 Arrestin (or S-antigen), C-terminal domain M60-like_N PF17291.2 gi|336476255|ref|YP_004615396.1| - 0.1 12.5 18.9 5.7 6.9 0.2 6.0 6 0 0 6 6 6 0 N-terminal domain of M60-like peptidases Herpes_BBRF1 PF04793.12 gi|336476255|ref|YP_004615396.1| - 0.13 11.3 0.0 72 2.3 0.0 4.5 6 0 0 6 6 6 0 BRRF1-like protein Integrin_alpha2 PF08441.12 gi|336476255|ref|YP_004615396.1| - 0.22 10.3 9.5 1.1e+02 1.5 0.0 6.1 7 0 0 7 7 7 0 Integrin alpha DUF2072 PF09845.9 gi|336476256|ref|YP_004615397.1| - 1.2e-45 155.0 0.2 1.4e-45 154.8 0.2 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein Spt4 PF06093.13 gi|336476256|ref|YP_004615397.1| - 0.21 11.7 0.7 0.48 10.6 0.4 1.7 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger DUF1624 PF07786.12 gi|336476257|ref|YP_004615398.1| - 2e-73 246.6 18.4 2.3e-73 246.4 18.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.22 gi|336476257|ref|YP_004615398.1| - 1.3e-07 31.0 30.2 0.0024 17.0 26.4 2.5 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.9 gi|336476257|ref|YP_004615398.1| - 4.6e-06 25.8 13.3 5.6e-05 22.2 5.6 2.7 1 1 0 2 2 2 2 OpgC protein IMS PF00817.20 gi|336476258|ref|YP_004615399.1| - 6.8e-49 165.7 0.1 1.6e-48 164.5 0.0 1.6 2 0 0 2 2 2 1 impB/mucB/samB family IMS_C PF11799.8 gi|336476258|ref|YP_004615399.1| - 8.6e-21 74.8 0.2 1.5e-20 74.0 0.2 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|336476258|ref|YP_004615399.1| - 1.8e-09 37.4 0.2 5.4e-09 35.9 0.0 2.0 2 0 0 2 2 2 1 IMS family HHH motif Cdd1 PF11731.8 gi|336476258|ref|YP_004615399.1| - 0.0012 19.0 0.0 0.0039 17.4 0.0 1.8 2 0 0 2 2 2 1 Pathogenicity locus HHH_5 PF14520.6 gi|336476258|ref|YP_004615399.1| - 0.021 15.4 0.0 0.097 13.3 0.0 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF2070 PF09843.9 gi|336476259|ref|YP_004615400.1| - 0.43 8.8 2.6 0.5 8.6 2.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Ribosomal_S17e PF00833.18 gi|336476260|ref|YP_004615401.1| - 1.9e-15 56.9 0.7 2e-15 56.8 0.7 1.0 1 0 0 1 1 1 1 Ribosomal S17 T4_Rnl2_C PF18043.1 gi|336476260|ref|YP_004615401.1| - 0.0078 16.3 0.3 0.014 15.5 0.3 1.5 1 1 0 1 1 1 1 T4 RNA ligase 2 C-terminal DHDPS PF00701.22 gi|336476261|ref|YP_004615402.1| - 1e-96 323.1 0.0 1.1e-96 322.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF4897 PF16238.5 gi|336476261|ref|YP_004615402.1| - 0.073 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) DapB_C PF05173.14 gi|336476262|ref|YP_004615403.1| - 2.5e-47 159.9 0.3 3.9e-47 159.2 0.3 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|336476262|ref|YP_004615403.1| - 1.4e-31 109.2 1.3 1.4e-31 109.2 1.3 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|336476262|ref|YP_004615403.1| - 0.00093 19.6 0.2 0.0018 18.7 0.2 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain PyrI PF01948.18 gi|336476263|ref|YP_004615404.1| - 7.3e-31 106.3 2.6 1.1e-30 105.7 2.6 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|336476263|ref|YP_004615404.1| - 6.1e-15 54.8 8.1 6.1e-15 54.8 8.1 1.9 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|336476264|ref|YP_004615405.1| - 9.2e-49 165.3 0.0 2.7e-48 163.7 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|336476264|ref|YP_004615405.1| - 1.8e-29 102.9 0.0 2.5e-29 102.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NAD_binding_7 PF13241.6 gi|336476264|ref|YP_004615405.1| - 0.15 12.5 0.0 0.25 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Glyco_trans_4_2 PF13477.6 gi|336476264|ref|YP_004615405.1| - 0.16 12.0 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like RraA-like PF03737.15 gi|336476265|ref|YP_004615406.1| - 1.3e-41 142.2 5.3 1.3e-41 142.2 5.3 2.3 2 1 0 3 3 3 1 Aldolase/RraA OMPdecase PF00215.24 gi|336476265|ref|YP_004615406.1| - 1e-17 64.5 3.2 2.4e-17 63.3 3.2 1.7 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|336476265|ref|YP_004615406.1| - 8.7e-07 28.3 8.5 1.2e-05 24.6 1.9 2.4 2 1 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|336476265|ref|YP_004615406.1| - 4.7e-06 26.1 2.4 4.7e-06 26.1 2.4 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG HMGL-like PF00682.19 gi|336476265|ref|YP_004615406.1| - 8.1e-06 25.6 2.3 0.00061 19.4 0.4 2.6 1 1 1 2 2 2 2 HMGL-like TMP-TENI PF02581.17 gi|336476265|ref|YP_004615406.1| - 4.4e-05 22.9 1.8 0.00034 20.0 0.8 2.5 2 1 0 2 2 2 1 Thiamine monophosphate synthase PEP_mutase PF13714.6 gi|336476265|ref|YP_004615406.1| - 8.8e-05 22.1 0.7 0.021 14.3 0.0 2.6 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase His_biosynth PF00977.21 gi|336476265|ref|YP_004615406.1| - 9.8e-05 21.9 1.3 0.0012 18.4 0.1 2.7 1 1 1 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.20 gi|336476265|ref|YP_004615406.1| - 0.00049 19.0 3.0 0.0094 14.8 0.4 3.1 1 1 1 3 3 3 1 Tryptophan synthase alpha chain ADH_zinc_N PF00107.26 gi|336476265|ref|YP_004615406.1| - 0.0015 18.5 1.1 0.25 11.3 0.7 2.7 1 1 1 2 2 2 2 Zinc-binding dehydrogenase IGPS PF00218.21 gi|336476265|ref|YP_004615406.1| - 0.014 14.6 0.6 0.026 13.7 0.6 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Ribul_P_3_epim PF00834.19 gi|336476265|ref|YP_004615406.1| - 0.023 14.1 2.1 0.19 11.1 2.1 2.4 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family PRAI PF00697.22 gi|336476265|ref|YP_004615406.1| - 0.028 14.2 0.1 0.059 13.1 0.1 1.5 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DUF561 PF04481.12 gi|336476265|ref|YP_004615406.1| - 0.04 13.1 3.9 0.081 12.1 0.3 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF561) DUF3983 PF13137.6 gi|336476265|ref|YP_004615406.1| - 0.076 12.8 1.2 0.29 11.0 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3983) Arc_PepC_II PF06847.11 gi|336476266|ref|YP_004615407.1| - 1.1e-30 106.0 0.0 1.1e-30 106.0 0.0 2.8 3 0 0 3 3 3 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|336476266|ref|YP_004615407.1| - 6.4e-15 55.5 8.5 6.4e-15 55.5 8.5 1.7 2 1 0 2 2 2 1 Type IV leader peptidase family CbiN PF02553.15 gi|336476266|ref|YP_004615407.1| - 0.025 14.6 1.1 0.1 12.6 0.7 2.2 2 0 0 2 2 2 0 Cobalt transport protein component CbiN GMP_synt_C PF00958.22 gi|336476268|ref|YP_004615409.1| - 4.9e-28 97.0 0.0 1.2e-27 95.8 0.0 1.7 1 1 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|336476268|ref|YP_004615409.1| - 1.2e-10 40.9 0.0 5.8e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|336476268|ref|YP_004615409.1| - 0.00021 20.2 0.0 0.016 14.0 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|336476268|ref|YP_004615409.1| - 0.0022 17.5 0.0 0.0067 15.9 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|336476268|ref|YP_004615409.1| - 0.003 16.9 0.2 0.0085 15.4 0.0 1.7 2 0 0 2 2 2 1 Arginosuccinate synthase PAPS_reduct PF01507.19 gi|336476268|ref|YP_004615409.1| - 0.078 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|336476268|ref|YP_004615409.1| - 0.088 12.4 0.1 0.29 10.7 0.1 2.0 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Radical_SAM PF04055.21 gi|336476269|ref|YP_004615410.1| - 2.5e-07 31.3 0.0 6.7e-07 29.8 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily AA_kinase PF00696.28 gi|336476270|ref|YP_004615411.1| - 1.9e-45 155.4 3.8 2.2e-45 155.2 3.8 1.0 1 0 0 1 1 1 1 Amino acid kinase family MC1 PF05854.11 gi|336476271|ref|YP_004615412.1| - 2.9e-41 139.7 1.2 3.4e-41 139.4 1.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 GCHY-1 PF02649.14 gi|336476272|ref|YP_004615413.1| - 4e-80 269.1 6.3 4.6e-80 268.9 6.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 CDC37_C PF08564.10 gi|336476272|ref|YP_004615413.1| - 0.047 13.8 0.0 0.14 12.3 0.0 1.9 1 0 0 1 1 1 0 Cdc37 C terminal domain Zn-ribbon_8 PF09723.10 gi|336476273|ref|YP_004615414.1| - 7.5e-06 26.0 1.7 1.1e-05 25.4 1.7 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|336476273|ref|YP_004615414.1| - 2.8e-05 24.0 1.8 3.2e-05 23.8 1.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|336476273|ref|YP_004615414.1| - 0.00011 22.2 0.5 0.00011 22.2 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_9 PF14369.6 gi|336476273|ref|YP_004615414.1| - 0.00062 20.0 0.7 1.2 9.5 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon zf-ribbon_3 PF13248.6 gi|336476273|ref|YP_004615414.1| - 0.00073 18.9 5.0 0.0068 15.8 0.4 2.2 2 0 0 2 2 2 1 zinc-ribbon domain TackOD1 PF18551.1 gi|336476273|ref|YP_004615414.1| - 0.00091 18.9 0.7 0.001 18.8 0.7 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Prok-RING_1 PF14446.6 gi|336476273|ref|YP_004615414.1| - 0.0011 18.9 1.1 0.0013 18.6 1.1 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.7 gi|336476273|ref|YP_004615414.1| - 0.0011 18.9 1.2 0.88 9.6 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|336476273|ref|YP_004615414.1| - 0.0019 18.0 3.5 0.17 11.8 0.3 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.13 gi|336476273|ref|YP_004615414.1| - 0.0043 16.7 2.1 0.0065 16.1 2.1 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DNA_ligase_ZBD PF03119.16 gi|336476273|ref|YP_004615414.1| - 0.0061 16.5 0.4 0.0061 16.5 0.4 1.6 2 0 0 2 2 1 1 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.12 gi|336476273|ref|YP_004615414.1| - 0.0073 16.3 1.4 0.0075 16.2 1.4 1.2 1 0 0 1 1 1 1 zinc-ribbons zf-H2C2_2 PF13465.6 gi|336476273|ref|YP_004615414.1| - 0.0073 16.7 2.7 0.25 11.8 0.4 2.2 2 0 0 2 2 2 1 Zinc-finger double domain zinc_ribbon_4 PF13717.6 gi|336476273|ref|YP_004615414.1| - 0.01 15.8 3.8 1.3 9.0 0.5 2.3 2 1 0 2 2 2 2 zinc-ribbon domain zf-ISL3 PF14690.6 gi|336476273|ref|YP_004615414.1| - 0.012 16.2 2.9 0.38 11.5 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS91 PF14319.6 gi|336476273|ref|YP_004615414.1| - 0.024 14.7 1.4 0.033 14.2 1.4 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn_Tnp_IS1 PF03811.13 gi|336476273|ref|YP_004615414.1| - 0.029 14.1 1.4 0.19 11.5 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain FYDLN_acid PF09538.10 gi|336476273|ref|YP_004615414.1| - 0.053 14.2 1.6 0.053 14.2 1.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-Sec23_Sec24 PF04810.15 gi|336476273|ref|YP_004615414.1| - 0.094 12.8 4.6 4.1 7.5 0.2 2.2 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger Prim_Zn_Ribbon PF08273.12 gi|336476273|ref|YP_004615414.1| - 0.1 12.9 2.8 0.49 10.7 0.6 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-RRN7 PF11781.8 gi|336476273|ref|YP_004615414.1| - 0.15 11.7 5.9 0.47 10.2 0.2 2.4 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf_UBZ PF18439.1 gi|336476273|ref|YP_004615414.1| - 0.16 11.6 2.9 1.8 8.3 0.4 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-HIT PF04438.16 gi|336476273|ref|YP_004615414.1| - 0.25 11.3 7.9 0.28 11.1 0.7 2.4 3 0 0 3 3 3 0 HIT zinc finger zinc_ribbon_5 PF13719.6 gi|336476273|ref|YP_004615414.1| - 0.64 9.8 4.0 43 4.0 4.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF2072 PF09845.9 gi|336476273|ref|YP_004615414.1| - 0.8 10.0 5.7 0.85 9.9 3.5 1.8 1 1 1 2 2 2 0 Zn-ribbon containing protein Rubredoxin_2 PF18073.1 gi|336476273|ref|YP_004615414.1| - 0.83 9.4 6.0 4.6 7.0 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain ZZ PF00569.17 gi|336476273|ref|YP_004615414.1| - 4.7 7.1 9.6 16 5.4 6.5 2.5 2 1 1 3 3 3 0 Zinc finger, ZZ type DUF2098 PF09871.9 gi|336476275|ref|YP_004615416.1| - 6.5e-26 90.5 0.2 8.7e-26 90.1 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) HAS-barrel PF09378.10 gi|336476275|ref|YP_004615416.1| - 0.041 14.0 0.6 0.059 13.5 0.6 1.6 1 1 0 1 1 1 0 HAS barrel domain NTP_transf_2 PF01909.23 gi|336476276|ref|YP_004615417.1| - 1.8e-05 24.9 0.3 0.00014 22.1 0.0 2.2 1 1 1 2 2 2 1 Nucleotidyltransferase domain Stealth_CR2 PF11380.8 gi|336476276|ref|YP_004615417.1| - 0.028 14.6 0.2 5.6 7.2 0.0 2.5 2 0 0 2 2 2 0 Stealth protein CR2, conserved region 2 Polbeta PF18765.1 gi|336476276|ref|YP_004615417.1| - 0.043 13.9 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 Polymerase beta, Nucleotidyltransferase Peptidase_M20 PF01546.28 gi|336476277|ref|YP_004615418.1| - 5.8e-29 101.3 0.0 7e-29 101.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|336476277|ref|YP_004615418.1| - 6.2e-09 35.7 0.0 1.4e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|336476277|ref|YP_004615418.1| - 0.052 13.2 0.0 0.087 12.5 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M28 Acetyltransf_7 PF13508.7 gi|336476278|ref|YP_004615419.1| - 5e-11 42.9 0.1 7.4e-11 42.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336476278|ref|YP_004615419.1| - 8.3e-11 42.2 0.0 1.1e-10 41.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336476278|ref|YP_004615419.1| - 1.1e-07 31.8 0.0 1.5e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336476278|ref|YP_004615419.1| - 0.0048 17.0 0.0 0.065 13.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|336476278|ref|YP_004615419.1| - 0.0072 16.5 0.1 0.011 15.8 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336476278|ref|YP_004615419.1| - 0.045 13.9 0.0 0.072 13.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Cobl PF09469.10 gi|336476278|ref|YP_004615419.1| - 0.12 12.6 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 Cordon-bleu ubiquitin-like domain Acetyltransf_1 PF00583.25 gi|336476279|ref|YP_004615420.1| - 5.3e-16 58.9 0.0 7.3e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336476279|ref|YP_004615420.1| - 2e-08 34.6 0.0 3.2e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336476279|ref|YP_004615420.1| - 7.1e-07 30.0 0.0 8.7e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336476279|ref|YP_004615420.1| - 3e-05 23.9 0.0 4.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|336476279|ref|YP_004615420.1| - 0.0035 17.5 0.0 0.0049 17.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|336476279|ref|YP_004615420.1| - 0.011 15.9 0.0 0.013 15.6 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336476279|ref|YP_004615420.1| - 0.032 14.2 0.0 0.06 13.3 0.0 1.4 1 1 0 1 1 1 0 FR47-like protein MtmB PF05369.12 gi|336476280|ref|YP_004615421.1| - 2.3e-158 527.7 0.0 2.6e-158 527.5 0.0 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB SCVP PF17619.2 gi|336476280|ref|YP_004615421.1| - 0.59 11.0 2.5 1.6 9.7 0.0 2.6 3 0 0 3 3 3 0 Secreted clade V proteins MFS_1 PF07690.16 gi|336476281|ref|YP_004615422.1| - 4e-27 95.1 95.3 5e-22 78.3 52.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3464 PF11947.8 gi|336476281|ref|YP_004615422.1| - 0.02 14.6 1.5 0.041 13.6 1.5 1.5 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 CCG PF02754.16 gi|336476282|ref|YP_004615423.1| - 3.6e-37 126.4 2.6 9.7e-20 70.6 0.2 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|336476283|ref|YP_004615424.1| - 2.5e-11 43.8 9.1 5.4e-11 42.8 9.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336476283|ref|YP_004615424.1| - 3e-09 36.9 7.5 5.8e-09 35.9 7.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476283|ref|YP_004615424.1| - 1.3e-08 34.9 9.6 2.6e-08 33.9 9.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336476283|ref|YP_004615424.1| - 4.3e-08 33.6 10.6 8.3e-08 32.7 10.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476283|ref|YP_004615424.1| - 5.5e-08 33.3 23.8 1.5e-06 28.7 13.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476283|ref|YP_004615424.1| - 2.1e-05 24.6 5.6 3.9e-05 23.7 5.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336476283|ref|YP_004615424.1| - 3.7e-05 23.4 12.0 0.0014 18.4 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|336476283|ref|YP_004615424.1| - 5.9e-05 22.9 11.6 0.0033 17.4 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|336476283|ref|YP_004615424.1| - 0.0059 16.4 7.1 0.031 14.0 0.5 2.2 1 1 1 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 gi|336476283|ref|YP_004615424.1| - 0.019 15.4 2.8 0.019 15.4 2.8 2.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|336476283|ref|YP_004615424.1| - 0.034 15.1 17.3 0.23 12.5 2.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336476283|ref|YP_004615424.1| - 0.049 14.6 14.7 2.8 9.0 14.7 2.4 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|336476283|ref|YP_004615424.1| - 0.067 13.9 5.0 1.9 9.3 0.6 2.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|336476283|ref|YP_004615424.1| - 0.08 13.1 2.0 0.08 13.1 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|336476283|ref|YP_004615424.1| - 0.19 12.3 9.2 1.7 9.2 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|336476283|ref|YP_004615424.1| - 0.22 11.7 8.5 1.9 8.7 0.8 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336476283|ref|YP_004615424.1| - 1 10.3 13.7 4.9 8.1 1.9 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain PGF-CTERM PF18204.1 gi|336476284|ref|YP_004615425.1| - 2.5e-07 30.4 0.5 2.5e-07 30.4 0.5 1.6 2 0 0 2 2 2 1 PGF-CTERM motif PGF-CTERM PF18204.1 gi|336476285|ref|YP_004615426.1| - 5.9e-08 32.4 1.5 8.7e-08 31.9 1.5 1.3 1 0 0 1 1 1 1 PGF-CTERM motif DUF3375 PF11855.8 gi|336476285|ref|YP_004615426.1| - 2.6e-05 23.4 10.7 0.0073 15.3 3.9 2.4 2 1 0 2 2 2 2 Protein of unknown function (DUF3375) HTH_Tnp_Tc3_1 PF11427.8 gi|336476285|ref|YP_004615426.1| - 0.00037 20.3 0.1 1.1 9.1 0.0 3.2 3 0 0 3 3 2 2 Tc3 transposase THP2 PF09432.10 gi|336476285|ref|YP_004615426.1| - 0.00052 20.1 10.3 0.025 14.6 0.3 3.5 2 2 1 3 3 3 2 Tho complex subunit THP2 MCPsignal PF00015.21 gi|336476285|ref|YP_004615426.1| - 0.0023 17.7 1.3 1.1 9.1 0.2 2.8 3 1 0 3 3 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain PilJ PF13675.6 gi|336476285|ref|YP_004615426.1| - 0.0025 17.8 6.8 2.9 7.9 0.1 4.0 1 1 2 4 4 4 1 Type IV pili methyl-accepting chemotaxis transducer N-term LUC7 PF03194.15 gi|336476285|ref|YP_004615426.1| - 0.011 15.4 3.1 0.011 15.4 3.1 2.1 1 1 0 2 2 2 0 LUC7 N_terminus Baculo_PEP_C PF04513.12 gi|336476285|ref|YP_004615426.1| - 0.018 15.1 0.8 1 9.4 0.1 3.1 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2408 PF10303.9 gi|336476285|ref|YP_004615426.1| - 0.018 15.6 10.8 0.093 13.3 3.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2408) SesA PF17107.5 gi|336476285|ref|YP_004615426.1| - 0.027 14.7 1.5 1.1 9.5 0.3 2.6 2 0 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Allexi_40kDa PF05549.11 gi|336476285|ref|YP_004615426.1| - 0.03 13.8 15.2 0.78 9.2 3.1 3.2 1 1 2 3 3 3 0 Allexivirus 40kDa protein DUF4363 PF14276.6 gi|336476285|ref|YP_004615426.1| - 0.059 13.5 15.1 0.15 12.2 0.3 4.2 3 1 2 5 5 4 0 Domain of unknown function (DUF4363) MerR_1 PF13411.6 gi|336476285|ref|YP_004615426.1| - 0.071 13.2 0.0 5.6 7.1 0.0 2.5 2 0 0 2 2 2 0 MerR HTH family regulatory protein NPV_P10 PF05531.12 gi|336476285|ref|YP_004615426.1| - 0.08 13.4 14.7 4.6 7.8 0.4 5.7 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF2203 PF09969.9 gi|336476285|ref|YP_004615426.1| - 0.081 13.6 9.2 3.9 8.2 0.1 3.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF4168 PF13767.6 gi|336476285|ref|YP_004615426.1| - 0.082 14.1 0.1 26 6.1 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4168) LidA_Long_CC PF18641.1 gi|336476285|ref|YP_004615426.1| - 0.093 12.8 17.3 0.16 12.0 0.2 4.3 3 2 2 5 5 5 0 LidA long coiled-coil domain SKA1 PF07160.12 gi|336476285|ref|YP_004615426.1| - 0.14 11.9 7.4 2.8 7.7 0.4 3.4 2 2 2 4 4 4 0 Spindle and kinetochore-associated protein 1 CheZ PF04344.13 gi|336476285|ref|YP_004615426.1| - 0.15 12.0 4.5 3.7 7.4 0.4 3.1 2 1 1 3 3 3 0 Chemotaxis phosphatase, CheZ SLATT_5 PF18160.1 gi|336476285|ref|YP_004615426.1| - 0.16 11.3 10.4 0.017 14.5 2.8 2.7 2 1 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 Seryl_tRNA_N PF02403.22 gi|336476285|ref|YP_004615426.1| - 0.2 11.9 6.2 4.4 7.6 0.4 3.7 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF883 PF05957.13 gi|336476285|ref|YP_004615426.1| - 0.25 12.0 9.9 2.1 9.0 0.0 4.5 1 1 2 4 4 4 0 Bacterial protein of unknown function (DUF883) BLOC1_2 PF10046.9 gi|336476285|ref|YP_004615426.1| - 0.54 10.6 7.4 11 6.4 0.5 4.6 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SOAR PF16533.5 gi|336476285|ref|YP_004615426.1| - 0.81 9.7 15.7 2.9 7.9 0.4 4.3 3 2 0 4 4 4 0 STIM1 Orai1-activating region Fib_alpha PF08702.10 gi|336476285|ref|YP_004615426.1| - 0.84 9.8 11.3 0.97 9.6 1.8 3.3 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family Cauli_AT PF03233.13 gi|336476285|ref|YP_004615426.1| - 1.2 9.0 3.8 4.2 7.3 0.9 2.8 1 1 0 2 2 2 0 Aphid transmission protein IMD PF08397.11 gi|336476285|ref|YP_004615426.1| - 1.3 8.4 5.3 4.4 6.6 0.1 2.9 2 2 1 3 3 3 0 IRSp53/MIM homology domain LtuB PF17455.2 gi|336476285|ref|YP_004615426.1| - 1.4 9.6 10.8 4.5 8.0 1.6 3.5 2 1 1 3 3 3 0 Late transcription unit B DUF1640 PF07798.11 gi|336476285|ref|YP_004615426.1| - 1.5 8.9 16.4 1.1 9.2 1.2 3.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1640) Syntaxin-6_N PF09177.11 gi|336476285|ref|YP_004615426.1| - 1.8 9.2 12.0 1.7 9.3 0.8 3.9 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DASH_Dam1 PF08653.10 gi|336476285|ref|YP_004615426.1| - 2.2 8.2 9.8 22 4.9 0.4 5.0 5 0 0 5 5 5 0 DASH complex subunit Dam1 DUF1451 PF07295.11 gi|336476285|ref|YP_004615426.1| - 2.7 8.0 15.0 0.72 9.9 0.6 3.8 2 2 1 3 3 3 0 Zinc-ribbon containing domain HMMR_N PF15905.5 gi|336476285|ref|YP_004615426.1| - 5.8 6.3 9.8 5.8 6.3 1.6 2.8 1 1 1 3 3 3 0 Hyaluronan mediated motility receptor N-terminal ATG16 PF08614.11 gi|336476285|ref|YP_004615426.1| - 8.5 6.5 13.3 14 5.9 0.2 3.7 2 2 0 4 4 4 0 Autophagy protein 16 (ATG16) HGD-D PF06050.13 gi|336476286|ref|YP_004615427.1| - 2.8e-90 303.3 0.0 3.5e-90 303.1 0.0 1.1 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component TFIIE_alpha PF02002.17 gi|336476286|ref|YP_004615427.1| - 0.032 14.1 6.8 0.084 12.7 0.4 2.6 3 0 0 3 3 3 0 TFIIE alpha subunit BcrAD_BadFG PF01869.20 gi|336476287|ref|YP_004615428.1| - 1.6e-63 214.7 1.9 2e-63 214.4 1.9 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Peptidase_M22 PF00814.25 gi|336476287|ref|YP_004615428.1| - 0.00021 21.1 0.0 0.0022 17.8 0.0 2.0 2 0 0 2 2 2 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|336476287|ref|YP_004615428.1| - 0.0021 17.8 0.2 0.0038 16.9 0.1 1.5 2 0 0 2 2 2 1 Carbamoyltransferase N-terminus FtsA PF14450.6 gi|336476287|ref|YP_004615428.1| - 5.2 7.5 6.6 30 5.1 0.2 3.1 2 2 0 2 2 2 0 Cell division protein FtsA GATase_6 PF13522.6 gi|336476288|ref|YP_004615429.1| - 6.8e-13 49.0 0.0 1.8e-10 41.1 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|336476288|ref|YP_004615429.1| - 1.7e-09 36.9 0.4 5.9e-08 31.8 0.4 2.1 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_7 PF13537.6 gi|336476288|ref|YP_004615429.1| - 4.6e-08 33.0 0.0 0.00075 19.4 0.0 2.3 2 0 0 2 2 2 2 Glutamine amidotransferase domain Glu_synthase PF01645.17 gi|336476289|ref|YP_004615430.1| - 8.1e-139 462.8 0.1 1.3e-138 462.2 0.1 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|336476289|ref|YP_004615430.1| - 3.1e-15 56.4 0.1 3e-08 33.5 0.1 2.7 2 1 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.18 gi|336476289|ref|YP_004615430.1| - 3e-10 39.7 5.4 5e-08 32.4 2.6 2.9 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|336476289|ref|YP_004615430.1| - 1.3e-09 37.6 4.8 4.6e-08 32.5 3.6 2.9 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|336476289|ref|YP_004615430.1| - 2.6e-08 33.6 3.3 1e-07 31.7 4.0 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase Fer4_9 PF13187.6 gi|336476289|ref|YP_004615430.1| - 2.7e-08 33.8 15.2 4.4e-07 30.0 11.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336476289|ref|YP_004615430.1| - 2.9e-08 34.5 7.4 6.9e-05 23.7 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|336476289|ref|YP_004615430.1| - 3.9e-08 32.8 18.1 1.2e-05 24.9 0.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336476289|ref|YP_004615430.1| - 8.1e-08 32.7 15.4 0.00015 22.2 14.0 3.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336476289|ref|YP_004615430.1| - 9.7e-08 32.0 17.3 0.00031 20.8 14.2 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476289|ref|YP_004615430.1| - 6.7e-06 26.1 8.9 6.7e-06 26.1 8.9 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336476289|ref|YP_004615430.1| - 1.2e-05 25.7 8.6 0.067 13.6 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336476289|ref|YP_004615430.1| - 1.5e-05 25.4 8.0 0.18 12.4 0.4 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476289|ref|YP_004615430.1| - 0.00014 21.8 21.5 0.019 15.0 1.4 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336476289|ref|YP_004615430.1| - 0.00042 20.3 2.8 0.00042 20.3 2.8 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain DHO_dh PF01180.21 gi|336476289|ref|YP_004615430.1| - 0.001 18.4 4.2 0.0053 16.0 4.2 2.0 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|336476289|ref|YP_004615430.1| - 0.0013 18.3 0.9 0.0024 17.4 0.4 1.7 2 0 0 2 2 1 1 Histidine biosynthesis protein G3P_antiterm PF04309.12 gi|336476289|ref|YP_004615430.1| - 0.25 10.7 0.7 0.43 10.0 0.3 1.6 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Fer4_4 PF12800.7 gi|336476289|ref|YP_004615430.1| - 0.46 11.1 21.2 2.4 8.9 1.9 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|336476289|ref|YP_004615430.1| - 1.6 9.7 12.5 3.4 8.6 1.1 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336476289|ref|YP_004615430.1| - 5.2 7.7 21.6 0.14 12.7 0.8 3.3 4 0 0 4 4 2 0 4Fe-4S single cluster domain of Ferredoxin I GXGXG PF01493.19 gi|336476290|ref|YP_004615431.1| - 1.4e-33 116.1 6.2 1.7e-33 115.8 6.2 1.1 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.13 gi|336476291|ref|YP_004615432.1| - 6.5e-37 126.7 0.0 1e-36 126.1 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|336476291|ref|YP_004615432.1| - 1.1e-18 67.1 0.1 2.1e-18 66.2 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_7 PF12838.7 gi|336476291|ref|YP_004615432.1| - 9.1e-07 29.4 9.7 9.1e-07 29.4 9.7 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476291|ref|YP_004615432.1| - 2.1e-06 27.8 13.7 0.0023 18.3 0.9 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.27 gi|336476291|ref|YP_004615432.1| - 3.1e-05 23.6 21.1 0.00014 21.5 4.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336476291|ref|YP_004615432.1| - 4.1e-05 23.6 8.6 4.1e-05 23.6 8.6 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476291|ref|YP_004615432.1| - 5.6e-05 23.2 17.6 0.00031 20.9 8.7 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476291|ref|YP_004615432.1| - 0.00014 21.9 10.8 0.043 14.0 0.6 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476291|ref|YP_004615432.1| - 0.00083 19.3 20.8 0.0039 17.2 2.8 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336476291|ref|YP_004615432.1| - 0.0013 18.7 2.5 0.0013 18.7 2.5 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|336476291|ref|YP_004615432.1| - 0.04 14.8 7.6 0.04 14.8 7.6 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336476291|ref|YP_004615432.1| - 0.041 14.8 16.2 0.32 12.0 2.8 3.2 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain DUF2442 PF10387.9 gi|336476291|ref|YP_004615432.1| - 0.13 12.5 0.0 0.3 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2442) Fer4_17 PF13534.6 gi|336476291|ref|YP_004615432.1| - 0.45 11.1 15.3 0.43 11.1 1.8 2.8 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336476291|ref|YP_004615432.1| - 0.82 10.3 12.5 3.5 8.2 0.6 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|336476291|ref|YP_004615432.1| - 1.1 9.7 17.1 0.87 10.1 2.8 2.8 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|336476291|ref|YP_004615432.1| - 4 7.7 14.0 1.7 8.8 1.1 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Gln-synt_C PF00120.24 gi|336476292|ref|YP_004615433.1| - 1.2e-131 438.9 0.0 1.4e-131 438.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|336476292|ref|YP_004615433.1| - 4.5e-33 112.8 0.4 1.2e-32 111.4 0.4 1.8 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|336476292|ref|YP_004615433.1| - 6.5e-05 22.7 0.1 0.00044 20.1 0.1 2.1 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain zinc-ribbons_6 PF07191.12 gi|336476293|ref|YP_004615434.1| - 0.0012 18.7 6.7 0.0038 17.2 6.7 1.8 1 0 0 1 1 1 1 zinc-ribbons ATP-synt_C PF00137.21 gi|336476293|ref|YP_004615434.1| - 0.029 14.7 0.6 0.055 13.8 0.6 1.4 1 0 0 1 1 1 0 ATP synthase subunit C zf-C3HC4_3 PF13920.6 gi|336476293|ref|YP_004615434.1| - 0.035 14.0 9.1 1.3 8.9 5.0 2.8 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) tRNA-Thr_ED PF08915.11 gi|336476294|ref|YP_004615435.1| - 1e-48 164.9 3.2 1.1e-48 164.7 3.2 1.0 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase sCache_like PF16736.5 gi|336476294|ref|YP_004615435.1| - 0.009 16.1 0.5 0.016 15.3 0.2 1.5 1 1 0 1 1 1 1 Single Cache-like DUF4695 PF15766.5 gi|336476294|ref|YP_004615435.1| - 0.024 14.9 0.2 0.037 14.2 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4695) GDPD PF03009.17 gi|336476294|ref|YP_004615435.1| - 0.042 13.6 0.4 0.049 13.3 0.4 1.2 1 0 0 1 1 1 0 Glycerophosphoryl diester phosphodiesterase family ATPase PF06745.13 gi|336476294|ref|YP_004615435.1| - 0.064 12.6 0.5 0.078 12.3 0.5 1.1 1 0 0 1 1 1 0 KaiC Ca_bind_SSO6904 PF18249.1 gi|336476294|ref|YP_004615435.1| - 0.12 12.7 2.2 0.2 12.0 0.5 2.0 1 1 1 2 2 2 0 Calcium binding protein SSO6904 DUF4282 PF14110.6 gi|336476295|ref|YP_004615436.1| - 0.0082 16.9 0.3 0.0082 16.9 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4282) CrgA PF06781.12 gi|336476295|ref|YP_004615436.1| - 0.12 12.4 0.1 0.12 12.4 0.1 1.0 1 0 0 1 1 1 0 Cell division protein CrgA PMSR PF01625.21 gi|336476296|ref|YP_004615437.1| - 3.2e-52 176.7 0.5 3.9e-52 176.5 0.5 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Response_reg PF00072.24 gi|336476297|ref|YP_004615438.1| - 1.8e-21 76.4 0.4 2.8e-21 75.8 0.4 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|336476297|ref|YP_004615438.1| - 2.4e-08 34.0 0.0 5.5e-08 32.8 0.0 1.6 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|336476297|ref|YP_004615438.1| - 1.1e-06 28.8 0.0 1.7e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|336476297|ref|YP_004615438.1| - 1.5e-06 28.4 0.0 4.1e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|336476297|ref|YP_004615438.1| - 3e-06 27.1 0.0 5.9e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|336476297|ref|YP_004615438.1| - 0.0045 17.1 0.0 0.0071 16.5 0.0 1.3 1 0 0 1 1 1 1 PAS fold Radical_SAM PF04055.21 gi|336476298|ref|YP_004615439.1| - 4.9e-07 30.3 0.1 1.3e-06 28.9 0.1 1.8 1 1 0 1 1 1 1 Radical SAM superfamily LAM_C PF12544.8 gi|336476298|ref|YP_004615439.1| - 1.4e-05 25.3 0.1 3.1e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 Lysine-2,3-aminomutase Fer4_14 PF13394.6 gi|336476298|ref|YP_004615439.1| - 2.1e-05 24.6 0.6 0.00026 21.1 0.0 2.5 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|336476298|ref|YP_004615439.1| - 0.00064 20.0 0.1 0.0014 18.9 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Gln-synt_C PF00120.24 gi|336476299|ref|YP_004615440.1| - 3e-141 470.4 0.0 3.5e-141 470.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|336476299|ref|YP_004615440.1| - 1.3e-30 104.9 0.2 3.4e-30 103.6 0.0 1.8 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|336476299|ref|YP_004615440.1| - 2.6e-06 27.2 0.0 1.3e-05 25.0 0.0 2.0 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain Alpha-amylase PF00128.24 gi|336476300|ref|YP_004615441.1| - 9.9e-23 81.2 3.3 2.4e-22 80.0 3.3 1.5 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.16 gi|336476300|ref|YP_004615441.1| - 8.5e-08 30.9 4.4 0.00095 17.5 0.0 3.0 3 0 0 3 3 3 2 Glycosyl hydrolase family 70 TPP_enzyme_N PF02776.18 gi|336476301|ref|YP_004615442.1| - 2e-51 174.0 0.0 7.6e-51 172.1 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|336476301|ref|YP_004615442.1| - 1.9e-40 138.1 1.1 6.3e-40 136.4 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|336476301|ref|YP_004615442.1| - 3.1e-31 107.9 0.0 8e-31 106.6 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|336476301|ref|YP_004615442.1| - 0.064 13.0 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit DUF1284 PF06935.11 gi|336476302|ref|YP_004615443.1| - 2e-24 85.9 2.6 2.5e-24 85.7 2.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) ELFV_dehydrog PF00208.21 gi|336476303|ref|YP_004615444.1| - 2.7e-71 240.1 0.4 4.3e-71 239.5 0.2 1.4 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|336476303|ref|YP_004615444.1| - 9.8e-55 184.0 0.0 1.7e-54 183.2 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|336476303|ref|YP_004615444.1| - 0.0025 17.2 0.3 0.0043 16.4 0.3 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|336476304|ref|YP_004615445.1| - 1.9e-19 70.1 1.1 3.1e-19 69.4 1.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|336476304|ref|YP_004615445.1| - 9.1e-05 22.1 0.1 0.00014 21.6 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|336476304|ref|YP_004615445.1| - 0.00026 21.2 0.4 0.00066 19.9 0.4 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 gi|336476304|ref|YP_004615445.1| - 0.00055 20.0 0.0 0.00075 19.5 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Epimerase PF01370.21 gi|336476304|ref|YP_004615445.1| - 0.005 16.3 0.0 0.0069 15.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Semialdhyde_dh PF01118.24 gi|336476304|ref|YP_004615445.1| - 0.041 14.3 0.1 0.11 12.9 0.1 1.7 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain PPDK_N PF01326.19 gi|336476305|ref|YP_004615446.1| - 2.5e-48 165.1 0.0 4.2e-48 164.3 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NRD1_2 PF01995.16 gi|336476306|ref|YP_004615447.1| - 3e-89 298.4 0.9 3.9e-89 298.0 0.9 1.1 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|336476306|ref|YP_004615447.1| - 1.3e-32 111.5 1.4 1.3e-32 111.5 1.4 2.1 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain FeoB_N PF02421.18 gi|336476306|ref|YP_004615447.1| - 0.024 14.2 0.0 11 5.6 0.0 2.9 3 0 0 3 3 3 0 Ferrous iron transport protein B HTH_21 PF13276.6 gi|336476306|ref|YP_004615447.1| - 0.03 14.5 0.1 0.069 13.3 0.1 1.6 1 0 0 1 1 1 0 HTH-like domain FUR PF01475.19 gi|336476306|ref|YP_004615447.1| - 0.078 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_20 PF12840.7 gi|336476306|ref|YP_004615447.1| - 0.16 12.0 0.0 0.38 10.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_S19e PF01090.19 gi|336476306|ref|YP_004615447.1| - 0.18 11.5 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e ABC1 PF03109.16 gi|336476307|ref|YP_004615448.1| - 5.7e-40 136.2 0.0 1.2e-39 135.1 0.0 1.6 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.25 gi|336476307|ref|YP_004615448.1| - 1.1e-06 28.2 0.4 2.3e-06 27.2 0.4 1.5 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|336476307|ref|YP_004615448.1| - 0.00011 22.2 0.1 0.00056 19.9 0.0 2.0 2 0 0 2 2 2 1 Phosphotransferase enzyme family BLI1 PF17324.2 gi|336476307|ref|YP_004615448.1| - 0.028 15.1 0.1 0.065 13.9 0.1 1.6 1 0 0 1 1 1 0 BLOC-1 interactor 1 Pkinase_Tyr PF07714.17 gi|336476307|ref|YP_004615448.1| - 0.1 11.8 0.1 0.59 9.4 0.1 2.3 1 1 0 1 1 1 0 Protein tyrosine kinase URO-D PF01208.17 gi|336476308|ref|YP_004615449.1| - 2.5e-37 128.9 0.0 3e-37 128.6 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) zinc_ribbon_10 PF10058.9 gi|336476309|ref|YP_004615450.1| - 0.0042 16.8 0.1 0.43 10.3 0.0 2.5 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein ADK_lid PF05191.14 gi|336476309|ref|YP_004615450.1| - 0.0053 16.7 0.3 2.5 8.1 0.0 2.4 2 0 0 2 2 2 2 Adenylate kinase, active site lid zf_UBZ PF18439.1 gi|336476309|ref|YP_004615450.1| - 0.0058 16.2 1.1 0.27 10.8 0.1 2.4 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zinc_ribbon_9 PF14369.6 gi|336476309|ref|YP_004615450.1| - 0.0065 16.7 0.7 0.77 10.1 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon zf-ribbon_3 PF13248.6 gi|336476309|ref|YP_004615450.1| - 0.01 15.2 0.3 0.99 8.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.15 gi|336476309|ref|YP_004615450.1| - 0.02 14.9 0.2 0.18 11.9 0.0 2.3 3 0 0 3 3 3 0 BED zinc finger DZR PF12773.7 gi|336476309|ref|YP_004615450.1| - 0.045 13.8 0.3 0.094 12.8 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon PHD PF00628.29 gi|336476309|ref|YP_004615450.1| - 0.058 13.3 0.6 1.9 8.4 0.2 2.4 2 0 0 2 2 2 0 PHD-finger zf_C2H2_10 PF18414.1 gi|336476309|ref|YP_004615450.1| - 0.089 12.3 1.1 2.4 7.8 0.3 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger TF_Zn_Ribbon PF08271.12 gi|336476309|ref|YP_004615450.1| - 0.097 12.2 3.1 4.4 6.9 0.2 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding PHD_2 PF13831.6 gi|336476309|ref|YP_004615450.1| - 0.14 11.7 2.4 0.88 9.2 0.3 2.2 2 0 0 2 2 2 0 PHD-finger zf-ACC PF17848.1 gi|336476309|ref|YP_004615450.1| - 0.59 10.2 4.1 2.7 8.2 0.2 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-RanBP PF00641.18 gi|336476309|ref|YP_004615450.1| - 1.4 8.3 11.3 0.85 9.0 1.0 3.1 3 0 0 3 3 3 0 Zn-finger in Ran binding protein and others Prim_Zn_Ribbon PF08273.12 gi|336476309|ref|YP_004615450.1| - 1.5 9.2 3.8 0.6 10.4 0.2 2.0 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Radical_SAM PF04055.21 gi|336476310|ref|YP_004615451.1| - 1.7e-19 70.8 0.0 1.7e-19 70.8 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|336476310|ref|YP_004615451.1| - 2.4e-06 27.9 0.0 7.9e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|336476310|ref|YP_004615451.1| - 4.4e-05 23.6 0.0 4.4e-05 23.6 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain AMP-binding PF00501.28 gi|336476311|ref|YP_004615452.1| - 1.3e-13 50.4 0.0 1.7e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|336476311|ref|YP_004615452.1| - 0.00068 18.8 0.0 0.011 14.8 0.0 2.1 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE PDGF_N PF04692.13 gi|336476311|ref|YP_004615452.1| - 0.13 13.1 0.2 3.5 8.5 0.0 2.6 2 0 0 2 2 2 0 Platelet-derived growth factor, N terminal region B12-binding PF02310.19 gi|336476312|ref|YP_004615453.1| - 4.5e-23 81.6 0.4 6.7e-23 81.0 0.4 1.2 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|336476312|ref|YP_004615453.1| - 2e-18 66.6 1.4 5.3e-18 65.2 0.0 2.3 3 0 0 3 3 3 1 B12 binding domain CENP-M PF11111.8 gi|336476312|ref|YP_004615453.1| - 0.025 13.8 0.0 0.034 13.4 0.0 1.2 1 0 0 1 1 1 0 Centromere protein M (CENP-M) IFT20 PF14931.6 gi|336476312|ref|YP_004615453.1| - 0.077 13.2 0.1 0.27 11.4 0.0 1.8 2 0 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 DUF1724 PF08350.10 gi|336476313|ref|YP_004615454.1| - 2.6e-23 81.9 0.7 4.5e-23 81.1 0.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.7 gi|336476313|ref|YP_004615454.1| - 2.9e-07 30.4 0.0 6.6e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336476313|ref|YP_004615454.1| - 2.8e-06 27.1 0.2 5e-06 26.3 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|336476313|ref|YP_004615454.1| - 0.0089 16.0 0.2 0.022 14.7 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.22 gi|336476313|ref|YP_004615454.1| - 0.015 15.2 0.1 0.049 13.6 0.1 1.8 2 0 0 2 2 2 0 MarR family HxlR PF01638.17 gi|336476313|ref|YP_004615454.1| - 0.02 14.7 0.4 0.061 13.2 0.4 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_11 PF08279.12 gi|336476313|ref|YP_004615454.1| - 0.033 14.1 0.3 0.068 13.1 0.3 1.5 1 0 0 1 1 1 0 HTH domain DUF505 PF04458.12 gi|336476313|ref|YP_004615454.1| - 0.065 11.6 0.1 0.11 10.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HemN_C PF06969.16 gi|336476313|ref|YP_004615454.1| - 0.073 13.1 0.1 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 HemN C-terminal domain MarR_2 PF12802.7 gi|336476313|ref|YP_004615454.1| - 0.076 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|336476313|ref|YP_004615454.1| - 0.15 12.6 0.1 0.32 11.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GAF_2 PF13185.6 gi|336476314|ref|YP_004615455.1| - 8.1e-26 91.0 0.0 1.2e-25 90.4 0.0 1.3 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.12 gi|336476314|ref|YP_004615455.1| - 2e-17 63.2 0.3 5.3e-17 61.9 0.3 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|336476314|ref|YP_004615455.1| - 2.1e-14 54.0 0.0 7e-14 52.3 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|336476314|ref|YP_004615455.1| - 0.0013 18.7 0.0 0.0044 17.0 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|336476314|ref|YP_004615455.1| - 0.0016 18.6 0.2 0.0064 16.7 0.0 2.2 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.6 gi|336476314|ref|YP_004615455.1| - 0.097 13.0 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 GAF domain GAF PF01590.26 gi|336476314|ref|YP_004615455.1| - 0.14 12.8 0.0 0.23 12.1 0.0 1.3 1 0 0 1 1 1 0 GAF domain zinc_ribbon_4 PF13717.6 gi|336476315|ref|YP_004615456.1| - 0.0007 19.5 5.6 0.024 14.6 0.1 2.8 3 0 0 3 3 3 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336476315|ref|YP_004615456.1| - 0.0035 17.4 2.7 0.16 12.2 0.3 2.4 2 0 0 2 2 2 1 Zinc ribbon domain zf_UBZ PF18439.1 gi|336476315|ref|YP_004615456.1| - 0.006 16.1 0.7 0.68 9.6 0.1 2.4 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger UPF0547 PF10571.9 gi|336476315|ref|YP_004615456.1| - 0.046 13.8 0.5 0.046 13.8 0.5 2.6 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.6 gi|336476315|ref|YP_004615456.1| - 0.048 13.4 4.8 1.9 8.3 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|336476315|ref|YP_004615456.1| - 0.058 13.4 2.2 0.73 9.9 0.3 2.1 2 0 0 2 2 2 0 CpXC protein zf-ribbon_3 PF13248.6 gi|336476315|ref|YP_004615456.1| - 0.089 12.2 3.4 0.21 11.1 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|336476315|ref|YP_004615456.1| - 0.11 12.2 6.4 0.59 9.9 0.2 3.1 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|336476315|ref|YP_004615456.1| - 0.7 9.9 5.1 68 3.5 6.8 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYVE PF01363.21 gi|336476315|ref|YP_004615456.1| - 0.89 9.7 9.8 1.4 9.1 3.4 2.1 1 1 1 2 2 2 0 FYVE zinc finger zf-RING_7 PF02591.15 gi|336476315|ref|YP_004615456.1| - 1 9.6 0.1 1 9.6 0.1 2.8 2 1 0 2 2 2 0 C4-type zinc ribbon domain FYVE_2 PF02318.16 gi|336476315|ref|YP_004615456.1| - 1.1 9.4 5.3 3.3 7.9 5.3 1.7 1 1 0 1 1 1 0 FYVE-type zinc finger IBR PF01485.21 gi|336476315|ref|YP_004615456.1| - 2.6 8.3 11.8 1 9.6 0.2 2.5 2 1 1 3 3 3 0 IBR domain, a half RING-finger domain DNA_RNApol_7kD PF03604.13 gi|336476315|ref|YP_004615456.1| - 3.8 7.3 0.0 3.8 7.3 0.0 2.6 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Oxidored_FMN PF00724.20 gi|336476316|ref|YP_004615457.1| - 1.3e-44 152.9 0.0 2.4e-44 152.0 0.0 1.5 1 1 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox_2 PF07992.14 gi|336476316|ref|YP_004615457.1| - 3.3e-19 69.2 0.0 6.6e-18 65.0 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336476316|ref|YP_004615457.1| - 2.2e-14 53.8 3.3 3.8e-07 30.6 0.3 3.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|336476316|ref|YP_004615457.1| - 3.8e-12 46.3 1.2 6.6e-09 35.9 0.1 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|336476316|ref|YP_004615457.1| - 4.8e-10 39.1 0.0 1.1e-06 28.1 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.24 gi|336476316|ref|YP_004615457.1| - 9.2e-10 38.6 0.3 0.00039 20.1 0.0 3.3 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|336476316|ref|YP_004615457.1| - 1.9e-08 34.1 0.1 6e-08 32.5 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|336476316|ref|YP_004615457.1| - 3.1e-07 29.8 0.5 3.1e-05 23.2 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|336476316|ref|YP_004615457.1| - 1.4e-06 27.8 0.0 0.0011 18.3 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|336476316|ref|YP_004615457.1| - 4.3e-06 25.7 0.1 4.3e-06 25.7 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|336476316|ref|YP_004615457.1| - 9e-06 25.1 0.1 0.0083 15.4 0.0 2.2 2 0 0 2 2 2 2 Thi4 family NAD_binding_7 PF13241.6 gi|336476316|ref|YP_004615457.1| - 4.1e-05 24.0 0.0 0.086 13.3 0.0 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 gi|336476316|ref|YP_004615457.1| - 8.3e-05 22.0 0.0 0.0038 16.5 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|336476316|ref|YP_004615457.1| - 0.0012 18.8 0.1 0.63 9.9 0.0 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|336476316|ref|YP_004615457.1| - 0.0018 17.9 1.6 0.33 10.6 0.1 2.9 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|336476316|ref|YP_004615457.1| - 0.005 16.0 0.3 0.32 10.0 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|336476316|ref|YP_004615457.1| - 0.0055 16.0 0.1 0.092 12.0 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain FMO-like PF00743.19 gi|336476316|ref|YP_004615457.1| - 0.0056 15.2 0.1 1.2 7.5 0.1 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like K_oxygenase PF13434.6 gi|336476316|ref|YP_004615457.1| - 0.025 13.7 0.0 2.7 7.0 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|336476316|ref|YP_004615457.1| - 0.052 13.5 0.2 1.1 9.2 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|336476316|ref|YP_004615457.1| - 0.075 12.6 1.1 0.64 9.6 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.20 gi|336476316|ref|YP_004615457.1| - 0.12 12.4 1.1 27 4.8 0.2 3.0 2 1 1 3 3 3 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|336476316|ref|YP_004615457.1| - 0.13 12.3 0.0 0.61 10.0 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiF PF00899.21 gi|336476316|ref|YP_004615457.1| - 0.15 11.4 0.5 17 4.6 0.0 2.8 3 0 0 3 3 3 0 ThiF family Amino_oxidase PF01593.24 gi|336476316|ref|YP_004615457.1| - 0.19 11.0 0.0 0.38 10.0 0.0 1.5 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Aldedh PF00171.22 gi|336476318|ref|YP_004615459.1| - 3.5e-89 299.4 0.0 4.3e-89 299.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|336476318|ref|YP_004615459.1| - 4.2e-05 22.8 0.0 0.00021 20.5 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA reductase (LuxC) adh_short PF00106.25 gi|336476319|ref|YP_004615460.1| - 1.4e-34 119.2 0.0 2e-34 118.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|336476319|ref|YP_004615460.1| - 2.8e-19 69.6 0.0 3.7e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|336476319|ref|YP_004615460.1| - 0.038 13.9 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 KR domain Phasin PF05597.11 gi|336476320|ref|YP_004615461.1| - 7e-10 39.0 8.5 1.8e-07 31.2 8.5 2.0 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Tex_N PF09371.10 gi|336476320|ref|YP_004615461.1| - 0.0015 18.2 1.6 0.0015 18.2 1.6 1.4 1 1 0 1 1 1 1 Tex-like protein N-terminal domain BMFP PF04380.13 gi|336476320|ref|YP_004615461.1| - 0.0018 18.7 0.6 0.0018 18.7 0.6 2.6 1 1 1 2 2 2 1 Membrane fusogenic activity GatB_Yqey PF02637.18 gi|336476320|ref|YP_004615461.1| - 0.0039 17.1 5.0 0.0063 16.4 5.0 1.4 1 1 0 1 1 1 1 GatB domain PRESAN PF09687.10 gi|336476320|ref|YP_004615461.1| - 0.0054 17.3 1.1 0.0062 17.1 1.1 1.1 1 0 0 1 1 1 1 Plasmodium RESA N-terminal DUF3349 PF11829.8 gi|336476320|ref|YP_004615461.1| - 0.012 16.4 7.1 0.097 13.5 4.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3349) ECH_2 PF16113.5 gi|336476320|ref|YP_004615461.1| - 0.025 14.1 0.8 0.028 13.9 0.8 1.0 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase DUF2813 PF11398.8 gi|336476320|ref|YP_004615461.1| - 0.032 13.5 1.2 0.038 13.2 1.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) Spo0A_C PF08769.11 gi|336476320|ref|YP_004615461.1| - 0.042 13.9 0.3 0.048 13.7 0.3 1.1 1 0 0 1 1 1 0 Sporulation initiation factor Spo0A C terminal RRF PF01765.19 gi|336476320|ref|YP_004615461.1| - 0.094 12.7 7.8 0.15 12.0 7.8 1.3 1 0 0 1 1 1 0 Ribosome recycling factor DUF4202 PF13875.6 gi|336476320|ref|YP_004615461.1| - 0.15 11.9 4.1 0.47 10.3 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4202) FliG_N PF14842.6 gi|336476320|ref|YP_004615461.1| - 0.16 12.5 5.0 0.23 12.0 4.9 1.4 1 1 0 1 1 1 0 FliG N-terminal domain Mistic PF11458.8 gi|336476320|ref|YP_004615461.1| - 0.23 11.4 6.4 1.1 9.2 1.3 2.3 1 1 1 2 2 2 0 Membrane-integrating protein Mistic YtxH PF12732.7 gi|336476320|ref|YP_004615461.1| - 0.57 10.7 5.2 0.34 11.5 2.9 1.7 1 1 1 2 2 2 0 YtxH-like protein PP2C_C PF07830.13 gi|336476320|ref|YP_004615461.1| - 0.73 10.3 9.9 1.1 9.8 4.1 2.3 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain DUF2680 PF10925.8 gi|336476320|ref|YP_004615461.1| - 1.4 8.9 10.3 0.59 10.2 5.8 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2680) DUF4574 PF15141.6 gi|336476320|ref|YP_004615461.1| - 4.5 7.2 6.7 1.5 8.8 0.6 2.2 1 1 1 2 2 2 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 ABC_tran PF00005.27 gi|336476321|ref|YP_004615462.1| - 3.7e-56 189.4 0.0 4.3e-29 101.8 0.0 2.8 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|336476321|ref|YP_004615462.1| - 1.2e-12 48.3 5.5 0.0023 17.8 0.0 4.2 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|336476321|ref|YP_004615462.1| - 1.8e-09 37.7 1.3 0.00071 19.5 0.0 2.7 2 1 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 gi|336476321|ref|YP_004615462.1| - 1.1e-07 31.4 1.3 0.013 15.2 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|336476321|ref|YP_004615462.1| - 8.4e-07 29.3 0.8 0.054 13.8 0.0 4.0 4 1 0 4 4 4 2 AAA domain SMC_N PF02463.19 gi|336476321|ref|YP_004615462.1| - 1.9e-06 27.5 0.8 0.56 9.6 0.0 3.8 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|336476321|ref|YP_004615462.1| - 6.2e-06 26.8 6.6 0.0026 18.3 1.1 2.5 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|336476321|ref|YP_004615462.1| - 1.7e-05 25.3 0.1 0.31 11.4 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.6 gi|336476321|ref|YP_004615462.1| - 3.5e-05 23.9 1.1 0.27 11.5 0.1 3.6 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|336476321|ref|YP_004615462.1| - 4.8e-05 23.2 0.3 0.11 12.2 0.0 2.6 3 0 0 3 3 2 2 AAA domain ATPase_2 PF01637.18 gi|336476321|ref|YP_004615462.1| - 0.00011 22.2 3.7 0.012 15.5 0.1 3.1 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea PRK PF00485.18 gi|336476321|ref|YP_004615462.1| - 0.00013 21.8 0.2 0.42 10.3 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family TniB PF05621.11 gi|336476321|ref|YP_004615462.1| - 0.00022 20.7 1.9 0.0053 16.2 0.0 3.4 4 0 0 4 4 4 1 Bacterial TniB protein AAA_28 PF13521.6 gi|336476321|ref|YP_004615462.1| - 0.00027 21.2 0.1 0.24 11.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|336476321|ref|YP_004615462.1| - 0.0005 20.6 3.8 0.65 10.6 0.0 3.1 4 1 0 4 4 2 2 AAA domain Rad17 PF03215.15 gi|336476321|ref|YP_004615462.1| - 0.00069 19.6 0.0 0.64 9.9 0.0 2.6 2 0 0 2 2 2 1 Rad17 P-loop domain G-alpha PF00503.20 gi|336476321|ref|YP_004615462.1| - 0.0007 18.8 0.4 0.21 10.7 0.0 2.7 2 1 0 2 2 2 1 G-protein alpha subunit AAA PF00004.29 gi|336476321|ref|YP_004615462.1| - 0.0012 19.3 2.1 0.91 10.0 0.1 4.0 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|336476321|ref|YP_004615462.1| - 0.0016 18.5 0.3 2.6 8.2 0.1 2.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase NACHT PF05729.12 gi|336476321|ref|YP_004615462.1| - 0.0019 18.1 3.5 2.1 8.3 0.0 4.0 5 0 0 5 5 4 1 NACHT domain AAA_15 PF13175.6 gi|336476321|ref|YP_004615462.1| - 0.0021 17.8 0.6 0.0021 17.8 0.6 2.8 3 0 0 3 3 3 1 AAA ATPase domain PduV-EutP PF10662.9 gi|336476321|ref|YP_004615462.1| - 0.0023 17.7 0.1 0.19 11.5 0.0 2.8 3 0 0 3 3 2 1 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.6 gi|336476321|ref|YP_004615462.1| - 0.003 17.7 0.0 0.22 11.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|336476321|ref|YP_004615462.1| - 0.0031 17.9 0.5 3.4 8.1 0.0 3.3 3 0 0 3 3 3 1 RNA helicase NB-ARC PF00931.22 gi|336476321|ref|YP_004615462.1| - 0.0033 16.7 0.7 0.28 10.3 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain MobB PF03205.14 gi|336476321|ref|YP_004615462.1| - 0.006 16.5 0.4 1.7 8.6 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.6 gi|336476321|ref|YP_004615462.1| - 0.0097 15.7 2.2 1.1 8.9 0.1 2.7 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|336476321|ref|YP_004615462.1| - 0.01 15.8 0.1 0.22 11.5 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|336476321|ref|YP_004615462.1| - 0.011 15.4 0.3 2.1 8.0 0.0 3.1 3 0 0 3 3 3 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|336476321|ref|YP_004615462.1| - 0.014 14.8 0.3 0.88 8.9 0.0 2.7 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|336476321|ref|YP_004615462.1| - 0.027 14.5 1.0 5.8 7.0 0.0 3.5 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|336476321|ref|YP_004615462.1| - 0.029 13.9 0.6 3.4 7.2 0.1 3.6 4 0 0 4 4 4 0 AAA domain PIF1 PF05970.14 gi|336476321|ref|YP_004615462.1| - 0.052 12.7 0.1 16 4.5 0.0 3.0 3 0 0 3 3 3 0 PIF1-like helicase PhoH PF02562.16 gi|336476321|ref|YP_004615462.1| - 0.065 12.7 0.4 5.3 6.4 0.0 2.7 3 0 0 3 3 2 0 PhoH-like protein Roc PF08477.13 gi|336476321|ref|YP_004615462.1| - 0.066 13.4 0.1 6 7.1 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|336476321|ref|YP_004615462.1| - 0.08 12.5 1.6 6.8 6.2 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.20 gi|336476321|ref|YP_004615462.1| - 0.11 12.4 0.1 9.8 6.1 0.0 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_7 PF12775.7 gi|336476321|ref|YP_004615462.1| - 0.12 11.9 0.2 3.8 7.0 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|336476321|ref|YP_004615462.1| - 0.12 11.6 1.4 0.78 8.9 0.4 2.5 3 0 0 3 3 3 0 KAP family P-loop domain AAA_19 PF13245.6 gi|336476321|ref|YP_004615462.1| - 0.14 12.5 1.2 1.2 9.5 0.0 2.6 3 0 0 3 3 2 0 AAA domain Zeta_toxin PF06414.12 gi|336476321|ref|YP_004615462.1| - 0.14 11.4 0.1 8.1 5.7 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin DBR1 PF05011.13 gi|336476321|ref|YP_004615462.1| - 0.16 12.4 0.2 0.33 11.4 0.2 1.5 1 0 0 1 1 1 0 Lariat debranching enzyme, C-terminal domain IIGP PF05049.13 gi|336476321|ref|YP_004615462.1| - 0.17 10.9 1.4 0.3 10.1 0.2 2.0 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) MeaB PF03308.16 gi|336476321|ref|YP_004615462.1| - 0.17 10.8 0.5 0.63 9.0 0.1 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_10 PF12846.7 gi|336476321|ref|YP_004615462.1| - 0.23 10.3 1.4 26 3.6 0.0 3.1 3 0 0 3 3 3 0 AAA-like domain DUF87 PF01935.17 gi|336476321|ref|YP_004615462.1| - 0.89 9.6 7.4 6.3 6.8 0.5 3.2 2 1 1 3 3 3 0 Helicase HerA, central domain PcrB PF01884.17 gi|336476322|ref|YP_004615463.1| - 9e-64 215.0 0.3 1.1e-63 214.8 0.3 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|336476322|ref|YP_004615463.1| - 6.1e-06 25.9 0.0 9.4e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|336476322|ref|YP_004615463.1| - 4.5e-05 22.8 0.2 8.1e-05 22.0 0.2 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|336476322|ref|YP_004615463.1| - 0.04 13.3 0.2 0.14 11.5 0.1 1.8 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|336476322|ref|YP_004615463.1| - 0.062 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase Ribul_P_3_epim PF00834.19 gi|336476322|ref|YP_004615463.1| - 0.17 11.2 0.3 0.3 10.4 0.3 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Glu_synthase PF01645.17 gi|336476322|ref|YP_004615463.1| - 0.56 9.3 4.4 0.88 8.6 0.3 2.1 2 0 0 2 2 2 0 Conserved region in glutamate synthase Ribosomal_L40e PF01020.17 gi|336476323|ref|YP_004615464.1| - 1.1e-05 25.2 9.1 1.4e-05 24.9 9.1 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|336476323|ref|YP_004615464.1| - 0.00042 19.9 0.8 0.00059 19.5 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|336476323|ref|YP_004615464.1| - 0.0018 18.3 1.3 0.0019 18.2 1.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|336476323|ref|YP_004615464.1| - 0.0038 16.6 1.9 0.0046 16.3 1.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|336476323|ref|YP_004615464.1| - 0.0072 16.0 5.9 0.0072 16.0 5.9 1.7 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37e PF01907.19 gi|336476323|ref|YP_004615464.1| - 0.018 15.2 4.1 0.022 14.9 4.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e UPF0547 PF10571.9 gi|336476323|ref|YP_004615464.1| - 0.12 12.4 1.7 0.2 11.8 1.7 1.4 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 GatB_N PF02934.15 gi|336476324|ref|YP_004615465.1| - 2.7e-103 345.1 0.0 3.6e-103 344.7 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|336476324|ref|YP_004615465.1| - 1.6e-44 151.4 0.9 2.8e-44 150.6 0.9 1.3 1 0 0 1 1 1 1 GatB domain Pathogen_betaC1 PF09593.10 gi|336476324|ref|YP_004615465.1| - 0.041 13.8 0.3 0.092 12.7 0.3 1.6 1 0 0 1 1 1 0 Beta-satellite pathogenicity beta C1 protein zf-Di19 PF05605.12 gi|336476324|ref|YP_004615465.1| - 0.047 14.0 0.2 0.096 13.0 0.2 1.5 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Amidase PF01425.21 gi|336476325|ref|YP_004615466.1| - 2.6e-147 491.5 0.0 2.9e-147 491.3 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 gi|336476326|ref|YP_004615467.1| - 1.5e-20 73.2 0.7 1.5e-20 73.2 0.7 1.4 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit Radical_SAM PF04055.21 gi|336476327|ref|YP_004615468.1| - 2.8e-09 37.6 0.0 5e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mrr_cat PF04471.12 gi|336476328|ref|YP_004615469.1| - 5.8e-28 97.2 0.0 1e-27 96.5 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|336476328|ref|YP_004615469.1| - 1.9e-11 44.0 0.1 4.9e-11 42.6 0.0 1.7 1 1 0 1 1 1 1 Restriction endonuclease bPH_1 PF08000.11 gi|336476328|ref|YP_004615469.1| - 0.0091 16.1 0.9 0.16 12.0 0.1 2.4 2 0 0 2 2 2 1 Bacterial PH domain Thioredoxin PF00085.20 gi|336476329|ref|YP_004615470.1| - 5.8e-25 87.3 0.0 7.3e-25 86.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|336476329|ref|YP_004615470.1| - 8.2e-07 29.5 0.1 9.3e-06 26.1 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|336476329|ref|YP_004615470.1| - 0.00027 21.2 0.0 0.013 15.8 0.0 2.4 2 1 1 3 3 3 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|336476329|ref|YP_004615470.1| - 0.0029 17.4 0.0 0.0046 16.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|336476329|ref|YP_004615470.1| - 0.0059 16.0 0.0 0.0074 15.7 0.0 1.2 1 1 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_3 PF13192.6 gi|336476329|ref|YP_004615470.1| - 0.011 15.7 0.0 0.019 15.0 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin domain Phosducin PF02114.16 gi|336476329|ref|YP_004615470.1| - 0.017 14.0 0.0 0.018 14.0 0.0 1.2 1 0 0 1 1 1 0 Phosducin HyaE PF07449.11 gi|336476329|ref|YP_004615470.1| - 0.035 14.1 0.0 0.086 12.8 0.0 1.7 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Redoxin PF08534.10 gi|336476329|ref|YP_004615470.1| - 0.045 13.5 0.1 0.41 10.4 0.1 2.0 1 1 1 2 2 2 0 Redoxin TraF PF13728.6 gi|336476329|ref|YP_004615470.1| - 0.096 12.5 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 F plasmid transfer operon protein DUF2114 PF09887.9 gi|336476330|ref|YP_004615471.1| - 5.9e-231 766.7 5.6 6.8e-231 766.5 5.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) DUF166 PF02593.14 gi|336476331|ref|YP_004615472.1| - 2.8e-62 210.2 0.0 3.3e-62 209.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DapB_N PF01113.20 gi|336476331|ref|YP_004615472.1| - 0.001 19.2 0.0 0.0034 17.5 0.0 1.9 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Thymidylate_kin PF02223.17 gi|336476332|ref|YP_004615473.1| - 1.3e-44 152.0 0.0 1.6e-44 151.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|336476332|ref|YP_004615473.1| - 5.1e-05 23.2 0.0 7.4e-05 22.7 0.0 1.3 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|336476332|ref|YP_004615473.1| - 0.00051 20.6 0.0 0.0045 17.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|336476332|ref|YP_004615473.1| - 0.022 14.9 0.0 0.03 14.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|336476332|ref|YP_004615473.1| - 0.068 13.4 0.0 0.17 12.1 0.0 1.6 1 1 1 2 2 2 0 AAA domain His_biosynth PF00977.21 gi|336476334|ref|YP_004615475.1| - 1.1e-32 113.3 0.5 1.3e-32 113.2 0.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein G3P_antiterm PF04309.12 gi|336476334|ref|YP_004615475.1| - 0.0023 17.3 0.3 1.9 7.9 0.0 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator MCR_C PF04609.12 gi|336476334|ref|YP_004615475.1| - 0.0077 15.3 0.1 0.011 14.9 0.1 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C KAP_NTPase PF07693.14 gi|336476334|ref|YP_004615475.1| - 0.043 13.1 0.1 0.058 12.6 0.1 1.1 1 0 0 1 1 1 0 KAP family P-loop domain Cobl PF09469.10 gi|336476334|ref|YP_004615475.1| - 0.046 14.0 0.0 0.09 13.0 0.0 1.5 1 0 0 1 1 1 0 Cordon-bleu ubiquitin-like domain UDPG_MGDP_dh_C PF03720.15 gi|336476334|ref|YP_004615475.1| - 0.1 13.0 0.1 0.18 12.3 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 4HFCP_synth PF04476.13 gi|336476335|ref|YP_004615476.1| - 3.8e-90 301.6 0.0 4.3e-90 301.4 0.0 1.0 1 0 0 1 1 1 1 4-HFC-P synthase HTH_5 PF01022.20 gi|336476336|ref|YP_004615477.1| - 5.6e-18 64.5 1.0 1.5e-13 50.3 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|336476336|ref|YP_004615477.1| - 3.2e-09 36.7 0.0 1.9e-07 31.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain DprA_WH PF17782.1 gi|336476336|ref|YP_004615477.1| - 9.9e-07 28.8 0.0 0.0061 16.6 0.0 2.4 2 0 0 2 2 2 2 DprA winged helix domain TrmB PF01978.19 gi|336476336|ref|YP_004615477.1| - 5.1e-05 23.1 0.0 0.024 14.5 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|336476336|ref|YP_004615477.1| - 0.00019 21.3 0.1 0.00056 19.8 0.0 1.9 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|336476336|ref|YP_004615477.1| - 0.00036 20.4 0.0 0.62 10.0 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|336476336|ref|YP_004615477.1| - 0.0004 19.9 2.4 0.0075 15.8 0.5 3.2 2 2 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|336476336|ref|YP_004615477.1| - 0.0011 18.9 0.9 2.4 8.2 0.0 3.1 3 1 0 3 3 3 2 Winged helix-turn-helix TFIIE_alpha PF02002.17 gi|336476336|ref|YP_004615477.1| - 0.0024 17.7 0.5 0.19 11.6 0.0 2.6 2 1 0 2 2 2 1 TFIIE alpha subunit HSCB_C PF07743.13 gi|336476336|ref|YP_004615477.1| - 0.0025 18.3 1.5 0.0053 17.2 1.5 1.5 1 0 0 1 1 1 1 HSCB C-terminal oligomerisation domain DUF2513 PF10711.9 gi|336476336|ref|YP_004615477.1| - 0.0048 17.2 0.7 0.055 13.8 0.0 2.2 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) Rrf2 PF02082.20 gi|336476336|ref|YP_004615477.1| - 0.0079 16.5 0.0 0.83 10.0 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator HTH_34 PF13601.6 gi|336476336|ref|YP_004615477.1| - 0.0085 16.3 0.0 0.018 15.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|336476336|ref|YP_004615477.1| - 0.014 15.3 0.0 0.087 12.8 0.0 2.2 2 0 0 2 2 2 0 MarR family KELK PF15796.5 gi|336476336|ref|YP_004615477.1| - 0.015 15.7 0.1 0.026 15.0 0.1 1.3 1 0 0 1 1 1 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DivIC PF04977.15 gi|336476336|ref|YP_004615477.1| - 0.041 13.7 0.2 0.088 12.6 0.2 1.5 1 0 0 1 1 1 0 Septum formation initiator DUF656 PF04920.12 gi|336476336|ref|YP_004615477.1| - 0.049 13.5 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF656) PadR PF03551.14 gi|336476336|ref|YP_004615477.1| - 0.068 13.1 0.0 0.85 9.6 0.0 2.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family ArsR PF09824.9 gi|336476336|ref|YP_004615477.1| - 0.083 12.5 0.1 1.3 8.7 0.1 2.5 1 1 1 2 2 2 0 ArsR transcriptional regulator Pup PF05639.11 gi|336476336|ref|YP_004615477.1| - 0.12 13.3 1.4 0.33 11.9 1.4 1.7 1 1 0 1 1 1 0 Pup-like protein IF2_N PF04760.15 gi|336476336|ref|YP_004615477.1| - 0.14 12.0 0.0 0.32 10.8 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region YabA PF06156.13 gi|336476336|ref|YP_004615477.1| - 0.14 12.8 0.2 0.26 12.0 0.2 1.5 1 0 0 1 1 1 0 Initiation control protein YabA AAA PF00004.29 gi|336476337|ref|YP_004615478.1| - 2.6e-98 325.6 0.0 1.6e-49 167.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336476337|ref|YP_004615478.1| - 4.6e-29 100.0 0.6 6e-14 51.6 0.1 3.0 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|336476337|ref|YP_004615478.1| - 2.5e-26 91.7 3.7 8.8e-26 89.9 1.9 2.8 4 0 0 4 4 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|336476337|ref|YP_004615478.1| - 1.7e-17 64.1 0.1 3.2e-07 30.6 0.0 2.9 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|336476337|ref|YP_004615478.1| - 8.6e-17 60.7 0.2 2.5e-16 59.2 0.2 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|336476337|ref|YP_004615478.1| - 1.5e-15 57.3 0.0 2.3e-08 33.9 0.0 3.0 3 1 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|336476337|ref|YP_004615478.1| - 1.3e-13 51.7 0.1 9.2e-05 22.9 0.0 4.1 2 2 1 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|336476337|ref|YP_004615478.1| - 5.4e-12 45.9 1.6 0.00014 21.9 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|336476337|ref|YP_004615478.1| - 2.3e-11 43.5 0.0 0.00022 20.6 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|336476337|ref|YP_004615478.1| - 1.1e-10 41.9 0.5 0.0058 16.9 0.0 3.9 2 2 2 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|336476337|ref|YP_004615478.1| - 2.5e-10 40.7 0.0 0.00036 20.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|336476337|ref|YP_004615478.1| - 6.2e-10 39.2 0.0 0.00029 20.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|336476337|ref|YP_004615478.1| - 2.3e-08 34.7 0.0 0.0082 16.7 0.0 2.9 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|336476337|ref|YP_004615478.1| - 8.2e-08 31.9 0.1 0.0097 15.3 0.0 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|336476337|ref|YP_004615478.1| - 2.1e-07 30.9 0.0 0.017 14.8 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|336476337|ref|YP_004615478.1| - 4.7e-07 30.2 0.0 0.026 14.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|336476337|ref|YP_004615478.1| - 1.3e-06 28.3 0.1 0.16 11.7 0.1 3.7 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|336476337|ref|YP_004615478.1| - 1.3e-06 28.3 0.0 0.016 15.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|336476337|ref|YP_004615478.1| - 1.3e-06 28.0 0.0 0.013 15.0 0.0 2.8 3 0 0 3 3 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|336476337|ref|YP_004615478.1| - 1.7e-06 28.4 0.0 0.082 13.3 0.0 2.5 2 0 0 2 2 2 2 RNA helicase DUF815 PF05673.13 gi|336476337|ref|YP_004615478.1| - 4.4e-06 26.1 0.0 0.078 12.1 0.0 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|336476337|ref|YP_004615478.1| - 5.1e-06 27.0 0.0 0.15 12.5 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.11 gi|336476337|ref|YP_004615478.1| - 7.2e-06 25.9 0.0 0.11 12.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|336476337|ref|YP_004615478.1| - 7.8e-06 25.3 0.0 0.05 12.9 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin ATPase_2 PF01637.18 gi|336476337|ref|YP_004615478.1| - 1.1e-05 25.5 0.1 0.46 10.4 0.1 3.8 2 2 1 3 3 3 2 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|336476337|ref|YP_004615478.1| - 1.1e-05 25.1 5.6 0.62 9.6 0.1 4.0 2 2 1 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|336476337|ref|YP_004615478.1| - 1.3e-05 25.6 0.1 0.29 11.4 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|336476337|ref|YP_004615478.1| - 2.8e-05 24.6 0.1 0.47 10.9 0.0 3.2 3 0 0 3 3 2 2 AAA domain NACHT PF05729.12 gi|336476337|ref|YP_004615478.1| - 3.9e-05 23.6 0.1 1 9.3 0.0 3.6 2 1 1 3 3 3 2 NACHT domain TsaE PF02367.17 gi|336476337|ref|YP_004615478.1| - 4.5e-05 23.4 0.0 0.44 10.6 0.0 2.6 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|336476337|ref|YP_004615478.1| - 7.5e-05 22.3 0.1 0.26 10.7 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein ATPase PF06745.13 gi|336476337|ref|YP_004615478.1| - 0.00018 21.0 2.6 1.1 8.6 0.1 3.8 2 2 1 3 3 3 1 KaiC AAA_30 PF13604.6 gi|336476337|ref|YP_004615478.1| - 0.00019 21.2 0.0 0.88 9.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.17 gi|336476337|ref|YP_004615478.1| - 0.00021 20.5 0.5 0.18 10.8 0.0 2.5 3 0 0 3 3 3 2 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.18 gi|336476337|ref|YP_004615478.1| - 0.00026 20.9 0.0 0.067 13.0 0.0 2.7 2 1 1 3 3 2 1 Bacterial dnaA protein Cytidylate_kin2 PF13189.6 gi|336476337|ref|YP_004615478.1| - 0.00063 19.9 0.3 1 9.5 0.0 3.3 4 0 0 4 4 3 1 Cytidylate kinase-like family Vps4_C PF09336.10 gi|336476337|ref|YP_004615478.1| - 0.00063 19.7 0.9 0.87 9.6 0.2 2.9 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain TniB PF05621.11 gi|336476337|ref|YP_004615478.1| - 0.00067 19.1 0.0 0.86 9.0 0.0 3.3 2 1 1 3 3 3 1 Bacterial TniB protein NB-ARC PF00931.22 gi|336476337|ref|YP_004615478.1| - 0.001 18.3 0.0 1.1 8.3 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain DUF2075 PF09848.9 gi|336476337|ref|YP_004615478.1| - 0.0012 18.1 0.0 0.52 9.5 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|336476337|ref|YP_004615478.1| - 0.0015 18.4 0.0 1.5 8.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain Guanylate_kin PF00625.21 gi|336476337|ref|YP_004615478.1| - 0.002 17.8 0.4 5.2 6.7 0.0 4.1 3 1 1 4 4 4 0 Guanylate kinase AFG1_ATPase PF03969.16 gi|336476337|ref|YP_004615478.1| - 0.0049 15.8 0.0 2.3 7.0 0.0 2.4 2 0 0 2 2 2 1 AFG1-like ATPase Cytidylate_kin PF02224.18 gi|336476337|ref|YP_004615478.1| - 0.0063 16.3 0.2 2.9 7.6 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase Sigma54_activ_2 PF14532.6 gi|336476337|ref|YP_004615478.1| - 0.0064 16.6 0.0 2.3 8.3 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|336476337|ref|YP_004615478.1| - 0.0087 16.0 3.0 8.4 6.3 0.0 3.9 3 1 1 4 4 3 0 NTPase IPT PF01745.16 gi|336476337|ref|YP_004615478.1| - 0.012 15.0 0.0 1.6 8.1 0.0 2.6 2 0 0 2 2 2 0 Isopentenyl transferase ResIII PF04851.15 gi|336476337|ref|YP_004615478.1| - 0.064 13.3 0.0 12 5.9 0.0 2.9 2 2 1 3 3 2 0 Type III restriction enzyme, res subunit CPT PF07931.12 gi|336476337|ref|YP_004615478.1| - 0.071 12.9 0.0 6.2 6.6 0.0 2.7 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Rad17 PF03215.15 gi|336476337|ref|YP_004615478.1| - 0.13 12.2 0.0 27 4.6 0.0 2.8 2 1 0 2 2 2 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|336476337|ref|YP_004615478.1| - 0.21 11.4 0.0 15 5.4 0.0 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain PIN_5 PF08745.11 gi|336476338|ref|YP_004615479.1| - 9.1e-94 312.7 0.0 1e-93 312.5 0.0 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease Pox_D5 PF03288.16 gi|336476338|ref|YP_004615479.1| - 0.16 12.5 0.1 9.3 6.8 0.0 2.6 2 1 1 3 3 3 0 Poxvirus D5 protein-like AdoMet_Synthase PF01941.19 gi|336476339|ref|YP_004615480.1| - 1.6e-159 531.0 0.7 1.8e-159 530.8 0.7 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Nup35_RRM_2 PF14605.6 gi|336476339|ref|YP_004615480.1| - 0.099 12.7 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif UbiA PF01040.18 gi|336476340|ref|YP_004615481.1| - 3.6e-42 144.4 20.6 4.9e-42 144.0 20.6 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family NadA PF02445.16 gi|336476341|ref|YP_004615482.1| - 2.3e-122 407.8 4.3 2.6e-122 407.7 4.3 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sigma70_r4_2 PF08281.12 gi|336476341|ref|YP_004615482.1| - 0.016 14.9 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Asparaginase PF00710.20 gi|336476341|ref|YP_004615482.1| - 0.024 14.2 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 Asparaginase, N-terminal DUF108 PF01958.18 gi|336476342|ref|YP_004615483.1| - 4.6e-36 123.1 0.3 7.6e-36 122.4 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|336476342|ref|YP_004615483.1| - 9.9e-24 84.2 0.0 1.4e-23 83.7 0.0 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|336476342|ref|YP_004615483.1| - 1.2e-05 25.4 0.1 2.2e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|336476342|ref|YP_004615483.1| - 8.1e-05 23.4 0.0 0.00013 22.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|336476342|ref|YP_004615483.1| - 0.00066 20.1 0.0 0.0011 19.4 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|336476342|ref|YP_004615483.1| - 0.0016 19.0 0.1 0.0027 18.3 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|336476342|ref|YP_004615483.1| - 0.0024 17.2 0.1 0.0043 16.4 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF3447 PF11929.8 gi|336476342|ref|YP_004615483.1| - 0.0086 16.0 0.2 0.02 14.8 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3447) Y1_Tnp PF01797.16 gi|336476342|ref|YP_004615483.1| - 0.018 15.1 0.1 0.095 12.8 0.2 1.9 2 0 0 2 2 2 0 Transposase IS200 like Gp_dh_N PF00044.24 gi|336476342|ref|YP_004615483.1| - 0.055 13.8 0.1 0.2 12.0 0.1 2.1 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|336476342|ref|YP_004615483.1| - 0.06 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|336476342|ref|YP_004615483.1| - 0.071 13.2 0.1 0.17 12.0 0.1 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|336476342|ref|YP_004615483.1| - 0.082 13.2 0.2 0.21 11.9 0.2 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain betaPIX_CC PF16523.5 gi|336476342|ref|YP_004615483.1| - 0.086 12.7 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 betaPIX coiled coil ThiF PF00899.21 gi|336476342|ref|YP_004615483.1| - 0.35 10.2 1.3 0.82 9.0 0.4 2.0 2 1 0 2 2 2 0 ThiF family QRPTase_C PF01729.19 gi|336476343|ref|YP_004615484.1| - 4.8e-56 189.2 0.8 6.4e-56 188.8 0.8 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|336476343|ref|YP_004615484.1| - 6.8e-21 74.1 0.0 1.6e-20 72.9 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.19 gi|336476343|ref|YP_004615484.1| - 0.0058 16.0 0.4 0.024 14.0 0.1 2.0 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family DHQS PF01959.16 gi|336476343|ref|YP_004615484.1| - 0.03 13.2 0.1 0.048 12.6 0.1 1.2 1 0 0 1 1 1 0 3-dehydroquinate synthase II IGPS PF00218.21 gi|336476343|ref|YP_004615484.1| - 0.049 12.8 0.3 0.075 12.2 0.3 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase BatD PF13584.6 gi|336476344|ref|YP_004615485.1| - 2.6e-10 39.8 2.0 0.00019 20.4 0.1 2.7 1 1 2 3 3 3 2 Oxygen tolerance TRAP_beta PF05753.14 gi|336476344|ref|YP_004615485.1| - 1.1e-08 34.7 0.6 0.0028 17.1 0.0 2.7 1 1 1 2 2 2 2 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|336476344|ref|YP_004615485.1| - 8.2e-08 32.4 2.0 0.011 15.9 0.3 2.9 3 0 0 3 3 3 2 CARDB DUF11 PF01345.18 gi|336476344|ref|YP_004615485.1| - 2.4e-06 27.7 0.0 0.0026 18.0 0.0 2.4 1 1 1 2 2 2 2 Domain of unknown function DUF11 bMG10 PF17973.1 gi|336476344|ref|YP_004615485.1| - 0.034 14.3 0.8 19 5.5 0.0 3.4 3 0 0 3 3 3 0 Bacterial Alpha-2-macroglobulin MG10 domain NPCBM_assoc PF10633.9 gi|336476344|ref|YP_004615485.1| - 0.035 14.4 0.0 19 5.6 0.0 3.0 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase ASH PF15780.5 gi|336476344|ref|YP_004615485.1| - 0.042 14.0 0.2 0.16 12.2 0.0 2.0 2 0 0 2 2 2 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Tubulin PF00091.25 gi|336476345|ref|YP_004615486.1| - 1.4e-34 120.0 0.1 2.3e-34 119.3 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|336476345|ref|YP_004615486.1| - 0.00045 19.5 0.0 0.001 18.3 0.0 1.6 1 1 0 1 1 1 1 Tubulin like AA_permease_2 PF13520.6 gi|336476346|ref|YP_004615487.1| - 2.4e-42 145.2 55.2 4.9e-42 144.2 55.4 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|336476346|ref|YP_004615487.1| - 5.2e-31 107.8 59.0 9.1e-31 107.0 59.0 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|336476346|ref|YP_004615487.1| - 0.0098 16.0 3.3 0.0098 16.0 3.3 5.5 6 2 0 6 6 6 1 C-terminus of AA_permease COX7a PF02238.15 gi|336476346|ref|YP_004615487.1| - 4.4 7.8 0.0 4.4 7.8 0.0 3.5 4 0 0 4 4 4 0 Cytochrome c oxidase subunit VII UPF0182 PF03699.13 gi|336476347|ref|YP_004615488.1| - 1.3e-283 942.8 14.8 1.5e-283 942.6 14.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) DUF296 PF03479.15 gi|336476348|ref|YP_004615489.1| - 3.4e-14 53.1 0.0 4e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain HisKA_2 PF07568.12 gi|336476349|ref|YP_004615490.1| - 6.4e-29 99.9 3.3 1.7e-28 98.5 3.3 1.8 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.12 gi|336476349|ref|YP_004615490.1| - 6.7e-16 58.4 0.1 3.2e-15 56.2 0.0 2.1 2 0 0 2 2 2 1 PAS fold HWE_HK PF07536.14 gi|336476349|ref|YP_004615490.1| - 1.9e-08 34.9 0.3 3.6e-08 34.0 0.3 1.5 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c PF02518.26 gi|336476349|ref|YP_004615490.1| - 5.5e-08 33.3 0.1 2e-07 31.5 0.1 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|336476349|ref|YP_004615490.1| - 1.6e-07 31.5 0.1 0.0008 19.6 0.0 2.9 2 1 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|336476349|ref|YP_004615490.1| - 7.6e-05 22.7 0.0 0.00015 21.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|336476349|ref|YP_004615490.1| - 0.00026 21.0 0.0 0.0092 16.0 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|336476349|ref|YP_004615490.1| - 0.0029 17.9 0.0 0.77 10.0 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|336476349|ref|YP_004615490.1| - 0.016 15.2 0.0 2.6 8.2 0.0 2.8 2 0 0 2 2 2 0 PAS domain DUF2075 PF09848.9 gi|336476349|ref|YP_004615490.1| - 0.035 13.3 2.1 0.044 13.0 0.3 2.1 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) TrmB PF01978.19 gi|336476350|ref|YP_004615491.1| - 3.2e-05 23.7 0.1 9.7e-05 22.2 0.1 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336476350|ref|YP_004615491.1| - 0.00019 21.2 0.4 0.00032 20.5 0.4 1.4 1 1 0 1 1 1 1 MarR family SMC_ScpB PF04079.16 gi|336476350|ref|YP_004615491.1| - 0.0013 18.4 0.1 0.0018 17.9 0.1 1.3 1 1 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_20 PF12840.7 gi|336476350|ref|YP_004615491.1| - 0.019 15.0 0.1 0.027 14.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|336476350|ref|YP_004615491.1| - 0.02 14.8 0.2 0.033 14.1 0.2 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.6 gi|336476350|ref|YP_004615491.1| - 0.021 14.8 0.2 0.035 14.1 0.2 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|336476350|ref|YP_004615491.1| - 0.024 14.4 0.2 0.046 13.5 0.2 1.6 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|336476350|ref|YP_004615491.1| - 0.045 13.9 0.0 0.085 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FtsX PF02687.21 gi|336476351|ref|YP_004615492.1| - 4e-17 62.5 12.6 3.4e-15 56.3 5.1 3.1 3 0 0 3 3 3 2 FtsX-like permease family MacB_PCD PF12704.7 gi|336476351|ref|YP_004615492.1| - 3.5e-15 56.9 2.3 5.8e-15 56.2 2.3 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain DHHC PF01529.20 gi|336476351|ref|YP_004615492.1| - 0.77 9.9 6.1 9.4 6.4 0.0 2.4 2 1 0 2 2 2 0 DHHC palmitoyltransferase MacB_PCD PF12704.7 gi|336476352|ref|YP_004615493.1| - 3.2e-16 60.3 0.5 3.2e-16 60.3 0.5 2.0 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|336476352|ref|YP_004615493.1| - 7.3e-10 39.2 8.4 7.3e-10 39.2 8.4 3.0 3 0 0 3 3 3 1 FtsX-like permease family Enolase_C PF00113.22 gi|336476353|ref|YP_004615494.1| - 1e-112 376.2 0.0 1.5e-112 375.7 0.0 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|336476353|ref|YP_004615494.1| - 1.7e-57 193.2 0.0 3.8e-57 192.1 0.0 1.6 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|336476353|ref|YP_004615494.1| - 1.7e-05 24.5 0.0 3.2e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|336476353|ref|YP_004615494.1| - 0.054 12.6 0.0 0.097 11.8 0.0 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus Na_Ca_ex PF01699.24 gi|336476354|ref|YP_004615495.1| - 1.5e-51 174.3 40.1 1.7e-27 96.3 10.8 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DVL PF08137.12 gi|336476354|ref|YP_004615495.1| - 0.065 13.1 0.4 0.17 11.8 0.1 1.9 2 0 0 2 2 2 0 DVL family Transketolase_C PF02780.20 gi|336476354|ref|YP_004615495.1| - 0.084 12.8 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Transketolase, C-terminal domain SHOCT PF09851.9 gi|336476355|ref|YP_004615496.1| - 9.4e-06 25.2 0.0 1.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF2207 PF09972.9 gi|336476355|ref|YP_004615496.1| - 0.015 14.1 0.1 0.018 13.9 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) GvpG PF05120.12 gi|336476355|ref|YP_004615496.1| - 0.17 11.9 0.0 0.24 11.4 0.0 1.3 1 1 0 1 1 1 0 Gas vesicle protein G RIC3 PF15361.6 gi|336476355|ref|YP_004615496.1| - 0.18 12.2 0.0 0.19 12.1 0.0 1.2 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 Claudin_3 PF06653.11 gi|336476356|ref|YP_004615497.1| - 0.095 12.6 3.7 0.14 12.1 3.7 1.2 1 0 0 1 1 1 0 Tight junction protein, Claudin-like PalH PF08733.10 gi|336476356|ref|YP_004615497.1| - 0.34 9.9 4.3 0.5 9.3 4.3 1.2 1 0 0 1 1 1 0 PalH/RIM21 EMP70 PF02990.16 gi|336476356|ref|YP_004615497.1| - 7.8 5.0 9.2 12 4.4 9.2 1.2 1 0 0 1 1 1 0 Endomembrane protein 70 YodL PF14191.6 gi|336476357|ref|YP_004615498.1| - 0.11 13.3 0.0 0.12 13.3 0.0 1.1 1 0 0 1 1 1 0 YodL-like Usp PF00582.26 gi|336476358|ref|YP_004615499.1| - 3.6e-30 105.3 0.0 4.4e-30 105.0 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family IF3_N PF05198.16 gi|336476358|ref|YP_004615499.1| - 0.054 13.8 0.0 0.26 11.6 0.0 2.1 1 1 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain SKI PF01202.22 gi|336476359|ref|YP_004615500.1| - 1e-30 107.0 0.1 1.2e-30 106.7 0.1 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 gi|336476359|ref|YP_004615500.1| - 1.3e-06 29.0 0.0 2.4e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|336476359|ref|YP_004615500.1| - 4e-05 23.5 0.2 0.00018 21.3 0.0 2.1 2 1 0 3 3 3 1 Cytidylate kinase AAA PF00004.29 gi|336476359|ref|YP_004615500.1| - 0.00022 21.6 0.2 0.00065 20.1 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CoaE PF01121.20 gi|336476359|ref|YP_004615500.1| - 0.00041 20.1 0.1 0.001 18.8 0.1 1.7 2 0 0 2 2 2 1 Dephospho-CoA kinase NB-ARC PF00931.22 gi|336476359|ref|YP_004615500.1| - 0.001 18.3 2.0 0.0032 16.7 0.4 2.3 2 1 0 2 2 2 1 NB-ARC domain Cytidylate_kin2 PF13189.6 gi|336476359|ref|YP_004615500.1| - 0.0011 19.1 0.5 0.0059 16.8 0.4 2.1 1 1 0 1 1 1 1 Cytidylate kinase-like family DUF87 PF01935.17 gi|336476359|ref|YP_004615500.1| - 0.0013 18.9 5.2 0.11 12.5 0.5 2.2 2 1 0 2 2 2 2 Helicase HerA, central domain AAA_33 PF13671.6 gi|336476359|ref|YP_004615500.1| - 0.0013 18.9 0.0 0.0024 18.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|336476359|ref|YP_004615500.1| - 0.0019 18.6 0.2 0.011 16.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|336476359|ref|YP_004615500.1| - 0.016 15.0 2.5 0.71 9.7 0.1 2.3 1 1 0 2 2 2 0 Deoxynucleoside kinase Thymidylate_kin PF02223.17 gi|336476359|ref|YP_004615500.1| - 0.033 13.9 0.2 2.3 7.9 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_16 PF13191.6 gi|336476359|ref|YP_004615500.1| - 0.045 14.1 0.1 0.068 13.5 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|336476359|ref|YP_004615500.1| - 0.052 13.4 0.2 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_28 PF13521.6 gi|336476359|ref|YP_004615500.1| - 0.054 13.7 0.0 0.095 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF5052 PF16475.5 gi|336476359|ref|YP_004615500.1| - 0.056 13.1 2.1 0.62 9.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5052) AAA_5 PF07728.14 gi|336476359|ref|YP_004615500.1| - 0.073 13.1 0.0 0.23 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) HTH_40 PF14493.6 gi|336476359|ref|YP_004615500.1| - 0.081 13.4 0.9 0.32 11.5 0.1 2.2 2 1 1 3 3 3 0 Helix-turn-helix domain MMR_HSR1 PF01926.23 gi|336476359|ref|YP_004615500.1| - 0.093 12.8 0.7 0.21 11.7 0.7 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|336476359|ref|YP_004615500.1| - 0.093 13.2 0.9 0.13 12.8 0.7 1.7 1 1 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 gi|336476359|ref|YP_004615500.1| - 0.096 13.1 0.0 0.2 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Cytochrom_B561 PF03188.16 gi|336476361|ref|YP_004615502.1| - 0.00055 20.1 3.2 0.0016 18.6 3.2 1.8 1 1 0 1 1 1 1 Eukaryotic cytochrome b561 Ninjurin PF04923.12 gi|336476361|ref|YP_004615502.1| - 0.0044 16.9 1.9 0.0044 16.9 1.9 2.1 1 1 0 2 2 2 1 Ninjurin EST1_DNA_bind PF10373.9 gi|336476361|ref|YP_004615502.1| - 0.035 13.6 0.2 0.051 13.0 0.2 1.3 1 0 0 1 1 1 0 Est1 DNA/RNA binding domain DUF2892 PF11127.8 gi|336476361|ref|YP_004615502.1| - 0.056 13.5 5.3 0.74 9.9 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2892) PhoR PF11808.8 gi|336476361|ref|YP_004615502.1| - 0.11 12.9 0.3 0.11 12.9 0.3 2.8 2 1 1 3 3 3 0 Phosphate regulon sensor protein PhoR DUF2070 PF09843.9 gi|336476361|ref|YP_004615502.1| - 0.12 10.6 12.1 0.13 10.6 12.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) MpPF26 PF07666.11 gi|336476361|ref|YP_004615502.1| - 1.4 9.1 14.7 0.07 13.2 4.2 2.2 1 1 1 2 2 2 0 M penetrans paralogue family 26 DUF202 PF02656.15 gi|336476361|ref|YP_004615502.1| - 6.3 7.3 15.3 2.2 8.8 3.5 3.4 1 1 3 4 4 4 0 Domain of unknown function (DUF202) PHP_C PF13263.6 gi|336476362|ref|YP_004615503.1| - 0.00025 20.8 0.0 0.0015 18.2 0.0 2.2 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|336476362|ref|YP_004615503.1| - 0.079 13.3 0.2 0.23 11.7 0.1 1.8 2 1 0 2 2 2 0 PHP domain PAC2 PF09754.9 gi|336476363|ref|YP_004615504.1| - 7.2e-52 176.5 0.0 8.2e-52 176.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.12 gi|336476364|ref|YP_004615505.1| - 7.1e-21 74.0 0.7 7.9e-21 73.9 0.7 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Prok-RING_4 PF14447.6 gi|336476364|ref|YP_004615505.1| - 0.0026 17.6 1.2 0.0034 17.2 1.2 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 4 zf-H2C2_2 PF13465.6 gi|336476364|ref|YP_004615505.1| - 0.0056 17.0 0.6 2 9.0 0.3 2.3 2 0 0 2 2 2 2 Zinc-finger double domain PolC_DP2 PF03833.13 gi|336476364|ref|YP_004615505.1| - 0.029 12.3 0.4 0.031 12.2 0.4 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 NRDD PF13597.6 gi|336476364|ref|YP_004615505.1| - 0.037 12.8 1.0 0.042 12.6 1.0 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase RecR PF02132.15 gi|336476364|ref|YP_004615505.1| - 0.054 13.1 1.2 0.062 12.9 1.2 1.1 1 0 0 1 1 1 0 RecR protein HypA PF01155.19 gi|336476364|ref|YP_004615505.1| - 0.1 12.6 1.0 0.13 12.2 1.0 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Sec23_Sec24 PF04810.15 gi|336476364|ref|YP_004615505.1| - 0.58 10.3 5.2 3.8 7.6 0.1 2.2 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger EIF_2_alpha PF07541.12 gi|336476365|ref|YP_004615506.1| - 9.4e-27 93.4 0.1 1.5e-26 92.7 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|336476365|ref|YP_004615506.1| - 1.1e-11 44.9 0.1 2.5e-11 43.8 0.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain DUF952 PF06108.12 gi|336476365|ref|YP_004615506.1| - 0.019 15.0 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF952) SPESP1 PF15754.5 gi|336476365|ref|YP_004615506.1| - 0.068 12.3 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Sperm equatorial segment protein 1 Ribosomal_S27e PF01667.17 gi|336476366|ref|YP_004615507.1| - 3.8e-25 87.4 0.8 4.1e-25 87.3 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-C2H2_12 PF18658.1 gi|336476366|ref|YP_004615507.1| - 0.003 17.1 0.1 0.0044 16.6 0.0 1.4 1 1 0 1 1 1 1 Zinc-finger C2H2-type Zn_Tnp_IS91 PF14319.6 gi|336476366|ref|YP_004615507.1| - 0.0047 16.9 0.2 0.0049 16.9 0.2 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain HypA PF01155.19 gi|336476366|ref|YP_004615507.1| - 0.019 15.0 0.3 0.022 14.8 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_10 PF16685.5 gi|336476366|ref|YP_004615507.1| - 0.036 14.2 0.2 0.32 11.1 0.0 1.9 2 0 0 2 2 2 0 zinc RING finger of MSL2 zinc_ribbon_6 PF14599.6 gi|336476366|ref|YP_004615507.1| - 0.05 13.6 2.2 0.15 12.1 2.1 1.9 2 1 0 2 2 2 0 Zinc-ribbon zf-BED PF02892.15 gi|336476366|ref|YP_004615507.1| - 0.089 12.8 3.3 0.28 11.2 0.2 2.0 1 1 1 2 2 2 0 BED zinc finger Zn-ribbon_8 PF09723.10 gi|336476366|ref|YP_004615507.1| - 0.13 12.4 0.7 0.2 11.8 0.7 1.2 1 0 0 1 1 1 0 Zinc ribbon domain Sgf11 PF08209.11 gi|336476366|ref|YP_004615507.1| - 0.41 10.2 2.8 0.52 9.9 0.0 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Ribosomal_L44 PF00935.19 gi|336476367|ref|YP_004615508.1| - 3.1e-25 88.4 9.9 4.3e-25 88.0 9.9 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 RNHCP PF12647.7 gi|336476367|ref|YP_004615508.1| - 0.0035 17.3 4.0 0.92 9.5 4.0 2.1 1 1 0 1 1 1 1 RNHCP domain DUF601 PF04642.12 gi|336476367|ref|YP_004615508.1| - 0.026 14.0 0.9 0.028 13.9 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function, DUF601 zf-ribbon_3 PF13248.6 gi|336476367|ref|YP_004615508.1| - 0.035 13.5 2.5 3.6 7.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|336476367|ref|YP_004615508.1| - 0.057 13.9 6.3 2.7 8.6 0.2 2.5 2 0 0 2 2 2 0 Zinc-finger double domain Sld5 PF05916.11 gi|336476368|ref|YP_004615509.1| - 0.49 10.9 3.9 0.54 10.7 2.2 2.0 2 1 0 2 2 2 0 GINS complex protein DNA_primase_S PF01896.19 gi|336476369|ref|YP_004615510.1| - 2.3e-19 70.1 0.0 1.1e-18 67.9 0.0 2.0 1 1 0 1 1 1 1 DNA primase small subunit HHH_5 PF14520.6 gi|336476369|ref|YP_004615510.1| - 0.038 14.6 0.0 0.23 12.1 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain FbpA PF05833.11 gi|336476370|ref|YP_004615511.1| - 1.6e-96 323.9 6.9 2e-96 323.5 6.9 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|336476370|ref|YP_004615511.1| - 5.8e-25 88.1 0.0 1.2e-24 87.1 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|336476370|ref|YP_004615511.1| - 0.00036 20.7 0.0 0.0011 19.1 0.0 1.8 1 0 0 1 1 1 1 NFACT protein RNA binding domain BCAS2 PF05700.11 gi|336476370|ref|YP_004615511.1| - 0.027 14.2 0.5 0.064 12.9 0.5 1.6 1 0 0 1 1 1 0 Breast carcinoma amplified sequence 2 (BCAS2) Ribosomal_S13 PF00416.22 gi|336476370|ref|YP_004615511.1| - 0.11 12.9 0.9 0.34 11.3 0.0 2.3 2 1 0 2 2 2 0 Ribosomal protein S13/S18 Plk4_PB2 PF18409.1 gi|336476370|ref|YP_004615511.1| - 0.27 11.9 1.8 9 7.0 0.3 2.7 2 0 0 2 2 2 0 Polo-like Kinase 4 Polo Box 2 DUF460 PF04312.13 gi|336476370|ref|YP_004615511.1| - 0.28 10.9 3.0 0.32 10.7 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF460) Sec34 PF04136.15 gi|336476370|ref|YP_004615511.1| - 0.63 9.9 4.7 0.18 11.7 1.0 1.9 2 0 0 2 2 2 0 Sec34-like family LEDGF PF11467.8 gi|336476370|ref|YP_004615511.1| - 1.5 8.5 10.7 3.1 7.5 2.2 2.6 2 0 0 2 2 2 0 Lens epithelium-derived growth factor (LEDGF) Spectrin PF00435.21 gi|336476370|ref|YP_004615511.1| - 2.8 8.5 5.3 0.87 10.1 0.6 2.2 2 0 0 2 2 2 0 Spectrin repeat eRF1_1 PF03463.15 gi|336476371|ref|YP_004615512.1| - 2.5e-28 98.7 2.5 3.8e-28 98.1 2.5 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|336476371|ref|YP_004615512.1| - 2.6e-24 85.9 1.1 5.8e-24 84.8 0.4 2.0 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|336476371|ref|YP_004615512.1| - 1.1e-09 38.7 0.1 3e-08 34.1 0.1 2.5 1 1 0 1 1 1 1 eRF1 domain 2 MatE PF01554.18 gi|336476372|ref|YP_004615513.1| - 1.9e-52 177.2 40.9 3.8e-30 104.7 16.3 2.7 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|336476372|ref|YP_004615513.1| - 2.1e-12 47.3 30.2 3.9e-10 40.0 18.4 4.7 3 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Toxin_trans PF07952.12 gi|336476372|ref|YP_004615513.1| - 0.35 9.9 2.3 2.6 7.0 0.5 2.2 2 0 0 2 2 2 0 Clostridium neurotoxin, Translocation domain DisA_N PF02457.16 gi|336476373|ref|YP_004615514.1| - 3.9e-20 71.6 0.9 6.7e-20 70.8 0.3 1.8 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding LigT_PEase PF02834.16 gi|336476374|ref|YP_004615515.1| - 1.1e-28 99.2 0.0 6.2e-17 61.6 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|336476374|ref|YP_004615515.1| - 2.8e-14 53.3 0.0 3.4e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|336476374|ref|YP_004615515.1| - 1e-08 35.4 0.0 2.7e-08 34.0 0.0 1.6 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Ribosomal_L1 PF00687.21 gi|336476374|ref|YP_004615515.1| - 0.017 14.9 0.1 0.025 14.3 0.1 1.4 1 1 0 1 1 1 0 Ribosomal protein L1p/L10e family AAA_25 PF13481.6 gi|336476374|ref|YP_004615515.1| - 0.019 14.6 0.0 0.1 12.2 0.0 1.8 1 1 1 2 2 2 0 AAA domain ApbE PF02424.15 gi|336476375|ref|YP_004615516.1| - 2.9e-79 266.3 0.0 3.4e-79 266.0 0.0 1.0 1 0 0 1 1 1 1 ApbE family MAP1B_neuraxin PF00414.17 gi|336476375|ref|YP_004615516.1| - 0.018 14.6 0.9 0.047 13.2 0.9 1.8 1 0 0 1 1 1 0 Neuraxin and MAP1B repeat DDE_Tnp_IS1595 PF12762.7 gi|336476375|ref|YP_004615516.1| - 0.036 14.1 0.2 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 ISXO2-like transposase domain DUF5633 PF18656.1 gi|336476375|ref|YP_004615516.1| - 0.26 11.2 0.8 0.81 9.6 0.3 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5633) Cytochrome_C7 PF14522.6 gi|336476377|ref|YP_004615518.1| - 5.2e-07 29.6 23.9 0.36 10.9 0.4 5.1 4 1 0 4 4 4 4 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|336476377|ref|YP_004615518.1| - 7.3e-06 26.4 18.9 0.45 11.0 1.7 5.1 4 1 0 4 4 4 3 Cytochrome c3 EF-hand_5 PF13202.6 gi|336476377|ref|YP_004615518.1| - 0.012 15.1 0.3 0.029 13.9 0.3 1.7 1 0 0 1 1 1 0 EF hand Cytochrom_NNT PF03264.14 gi|336476377|ref|YP_004615518.1| - 0.014 15.1 24.9 0.11 12.2 5.1 5.5 5 1 1 6 6 6 0 NapC/NirT cytochrome c family, N-terminal region EF-hand_1 PF00036.32 gi|336476377|ref|YP_004615518.1| - 0.053 13.1 0.1 0.15 11.7 0.1 1.8 1 0 0 1 1 1 0 EF hand EF-hand_8 PF13833.6 gi|336476377|ref|YP_004615518.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain pair Cytochrom_CIII PF02085.16 gi|336476377|ref|YP_004615518.1| - 0.22 11.9 24.8 1.1 9.6 5.0 5.1 4 1 1 5 5 5 0 Class III cytochrome C family CCP_MauG PF03150.14 gi|336476377|ref|YP_004615518.1| - 4.1 8.0 17.0 5.5 7.6 0.0 5.7 5 2 0 5 5 5 0 Di-haem cytochrome c peroxidase Complex1_51K PF01512.17 gi|336476378|ref|YP_004615519.1| - 6.6e-25 87.8 0.0 1.4e-24 86.7 0.0 1.6 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 gi|336476378|ref|YP_004615519.1| - 2.4e-22 78.8 1.8 4.7e-22 77.8 0.3 2.2 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.9 gi|336476378|ref|YP_004615519.1| - 2.2e-11 43.4 1.0 2.2e-11 43.4 1.0 1.9 2 0 0 2 2 2 1 SLBB domain Fer4_8 PF13183.6 gi|336476378|ref|YP_004615519.1| - 3.9e-09 36.8 3.7 0.0003 21.2 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336476378|ref|YP_004615519.1| - 1.2e-08 34.9 10.5 1.8e-06 28.0 12.4 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336476378|ref|YP_004615519.1| - 9e-08 32.5 6.1 0.0058 17.1 0.2 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476378|ref|YP_004615519.1| - 7.1e-07 29.2 12.0 0.0045 17.4 2.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336476378|ref|YP_004615519.1| - 7.8e-07 29.6 25.6 5.9e-05 23.6 15.4 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336476378|ref|YP_004615519.1| - 3.5e-06 26.9 12.7 0.0055 16.7 2.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336476378|ref|YP_004615519.1| - 4e-06 26.9 8.2 0.014 15.6 0.9 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476378|ref|YP_004615519.1| - 6.8e-06 26.2 13.3 0.00021 21.4 14.0 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336476378|ref|YP_004615519.1| - 6.8e-06 26.9 6.3 0.053 14.5 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|336476378|ref|YP_004615519.1| - 1.3e-05 24.8 14.0 0.0069 16.2 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|336476378|ref|YP_004615519.1| - 3.1e-05 23.8 13.6 0.0074 16.3 2.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|336476378|ref|YP_004615519.1| - 0.00017 21.3 9.4 0.0036 17.0 1.5 2.4 1 1 1 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|336476378|ref|YP_004615519.1| - 0.0022 18.8 7.5 0.79 10.6 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain NQRA PF05896.11 gi|336476378|ref|YP_004615519.1| - 0.0038 16.7 0.0 0.0055 16.2 0.0 1.2 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Fer4_18 PF13746.6 gi|336476378|ref|YP_004615519.1| - 0.021 15.0 10.5 5.9 7.1 10.5 2.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336476378|ref|YP_004615519.1| - 0.055 14.4 5.2 0.055 14.4 5.2 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|336476378|ref|YP_004615519.1| - 0.29 11.7 11.4 0.35 11.5 0.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I NQR2_RnfD_RnfE PF03116.15 gi|336476379|ref|YP_004615520.1| - 1.3e-73 248.0 19.3 1.5e-73 247.7 19.3 1.0 1 0 0 1 1 1 1 NQR2, RnfD, RnfE family ALMT PF11744.8 gi|336476379|ref|YP_004615520.1| - 5.8 5.6 6.2 8.4 5.1 6.2 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter FMN_bind PF04205.14 gi|336476380|ref|YP_004615521.1| - 9.7e-17 61.3 0.1 1.8e-16 60.5 0.1 1.4 1 0 0 1 1 1 1 FMN-binding domain Rnf-Nqr PF02508.14 gi|336476381|ref|YP_004615522.1| - 1.7e-59 200.7 17.7 2e-59 200.5 17.7 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein ECH_1 PF00378.20 gi|336476381|ref|YP_004615522.1| - 0.18 11.1 0.2 1.1 8.5 0.0 1.9 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase Rnf-Nqr PF02508.14 gi|336476382|ref|YP_004615523.1| - 4.5e-52 176.5 20.6 5e-52 176.4 20.6 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein DUF1129 PF06570.11 gi|336476382|ref|YP_004615523.1| - 0.72 9.3 10.1 0.46 9.9 1.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF1761 PF08570.10 gi|336476382|ref|YP_004615523.1| - 0.89 9.8 12.4 8.5 6.6 12.4 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1761) Abhydrolase_9_N PF15420.6 gi|336476382|ref|YP_004615523.1| - 9.3 6.2 12.0 0.29 11.1 1.0 2.6 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus Fer4 PF00037.27 gi|336476383|ref|YP_004615524.1| - 1.5e-23 81.6 41.3 3.2e-08 33.1 3.2 5.6 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336476383|ref|YP_004615524.1| - 2.6e-19 69.1 47.3 1.1e-08 35.1 11.3 4.2 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476383|ref|YP_004615524.1| - 6.5e-15 55.5 37.5 3.8e-09 37.0 11.0 4.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336476383|ref|YP_004615524.1| - 4.5e-14 51.8 42.3 0.00013 21.9 1.8 5.5 5 0 0 5 5 5 4 4Fe-4S binding domain FeS PF04060.13 gi|336476383|ref|YP_004615524.1| - 2.2e-13 49.6 5.5 2.2e-13 49.6 5.5 4.5 4 2 1 5 5 5 1 Putative Fe-S cluster Fer4_10 PF13237.6 gi|336476383|ref|YP_004615524.1| - 5.5e-13 48.8 55.1 5.3e-07 29.6 14.3 4.5 2 2 3 5 5 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476383|ref|YP_004615524.1| - 4.4e-12 45.9 42.8 5.7e-07 29.6 14.5 4.2 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476383|ref|YP_004615524.1| - 2e-11 43.2 42.8 0.00015 21.7 1.8 5.7 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336476383|ref|YP_004615524.1| - 9.5e-09 36.1 34.7 0.00083 20.2 1.0 4.8 5 0 0 5 5 4 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|336476383|ref|YP_004615524.1| - 2.8e-07 31.0 54.0 0.0017 19.2 4.2 6.3 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336476383|ref|YP_004615524.1| - 2.9e-07 30.9 38.8 0.0015 19.0 1.3 4.9 4 1 1 5 5 5 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476383|ref|YP_004615524.1| - 3.3e-06 27.2 50.9 0.0032 17.9 1.1 6.3 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_13 PF13370.6 gi|336476383|ref|YP_004615524.1| - 9e-06 26.1 31.7 0.036 14.6 3.6 5.1 5 0 0 5 5 5 3 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|336476383|ref|YP_004615524.1| - 0.00034 21.0 43.0 0.0041 17.5 14.6 4.3 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|336476383|ref|YP_004615524.1| - 0.0039 17.9 35.0 0.051 14.3 2.4 5.8 5 1 1 6 6 6 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|336476383|ref|YP_004615524.1| - 0.01 16.0 31.4 0.032 14.4 13.6 3.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336476383|ref|YP_004615524.1| - 1.7 9.5 38.6 0.28 12.0 0.9 4.7 4 1 1 5 5 4 0 4Fe-4S dicluster domain SirB PF04247.12 gi|336476384|ref|YP_004615525.1| - 0.00082 19.5 5.9 0.0011 19.0 5.9 1.2 1 0 0 1 1 1 1 Invasion gene expression up-regulator, SirB DUF4870 PF09685.10 gi|336476384|ref|YP_004615525.1| - 0.0058 16.7 8.2 0.0078 16.3 8.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) TIC20 PF16166.5 gi|336476384|ref|YP_004615525.1| - 0.018 14.8 3.2 0.02 14.7 3.2 1.1 1 0 0 1 1 1 0 Chloroplast import apparatus Tic20-like DUF4064 PF13273.6 gi|336476384|ref|YP_004615525.1| - 2.2 8.6 10.8 5.8 7.3 10.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) Rep_fac_C PF08542.11 gi|336476385|ref|YP_004615526.1| - 5.4e-24 84.4 0.1 1.1e-23 83.4 0.1 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|336476385|ref|YP_004615526.1| - 3.6e-19 69.5 0.0 6.2e-18 65.5 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|336476385|ref|YP_004615526.1| - 2.2e-16 60.1 0.0 1.1e-10 41.5 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|336476385|ref|YP_004615526.1| - 2.5e-09 37.1 0.1 2.8e-08 33.7 0.0 2.5 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|336476385|ref|YP_004615526.1| - 3.7e-08 33.5 0.0 7.7e-08 32.5 0.0 1.5 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|336476385|ref|YP_004615526.1| - 6.2e-07 30.0 0.2 0.00015 22.2 0.0 2.7 2 1 1 3 3 3 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|336476385|ref|YP_004615526.1| - 1.1e-06 28.9 0.2 2.2e-06 27.9 0.2 1.6 1 0 0 1 1 1 1 AAA C-terminal domain ResIII PF04851.15 gi|336476385|ref|YP_004615526.1| - 7.5e-06 26.1 0.0 3.2e-05 24.0 0.0 2.0 2 1 0 2 2 1 1 Type III restriction enzyme, res subunit TIP49 PF06068.13 gi|336476385|ref|YP_004615526.1| - 9.7e-06 25.0 0.0 3.3e-05 23.2 0.0 1.8 1 1 1 2 2 2 1 TIP49 P-loop domain AAA_14 PF13173.6 gi|336476385|ref|YP_004615526.1| - 2.7e-05 24.2 0.0 6.2e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|336476385|ref|YP_004615526.1| - 4.1e-05 23.0 0.0 0.0067 15.8 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|336476385|ref|YP_004615526.1| - 0.00015 21.6 0.0 0.00039 20.3 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.13 gi|336476385|ref|YP_004615526.1| - 0.00038 20.3 0.0 0.0019 18.0 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_5 PF07728.14 gi|336476385|ref|YP_004615526.1| - 0.00075 19.5 0.0 0.014 15.4 0.0 2.8 2 2 1 3 3 3 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|336476385|ref|YP_004615526.1| - 0.00081 19.1 0.0 0.29 10.8 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|336476385|ref|YP_004615526.1| - 0.0011 18.7 0.0 0.0028 17.4 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|336476385|ref|YP_004615526.1| - 0.0028 17.9 0.0 0.74 10.1 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|336476385|ref|YP_004615526.1| - 0.007 16.2 0.0 0.019 14.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|336476385|ref|YP_004615526.1| - 0.0093 16.5 0.0 0.051 14.1 0.0 2.1 2 1 0 2 2 2 1 AAA domain SNF2_N PF00176.23 gi|336476385|ref|YP_004615526.1| - 0.015 14.0 0.0 0.06 12.1 0.0 1.7 1 1 0 2 2 2 0 SNF2 family N-terminal domain AAA_2 PF07724.14 gi|336476385|ref|YP_004615526.1| - 0.021 14.9 0.0 0.053 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_24 PF13479.6 gi|336476385|ref|YP_004615526.1| - 0.036 13.8 0.0 0.11 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|336476385|ref|YP_004615526.1| - 0.045 13.2 0.0 0.98 8.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_7 PF12775.7 gi|336476385|ref|YP_004615526.1| - 0.058 12.9 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|336476385|ref|YP_004615526.1| - 0.075 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|336476385|ref|YP_004615526.1| - 0.16 12.3 0.2 0.55 10.6 0.2 2.1 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|336476385|ref|YP_004615526.1| - 0.18 12.2 0.0 0.36 11.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Sm_multidrug_ex PF06695.11 gi|336476386|ref|YP_004615527.1| - 1.5e-37 128.9 6.7 2e-37 128.5 6.7 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein Fer4 PF00037.27 gi|336476387|ref|YP_004615528.1| - 3.7e-15 55.0 14.3 5.3e-08 32.4 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336476387|ref|YP_004615528.1| - 1.1e-11 44.6 7.6 1e-05 25.6 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476387|ref|YP_004615528.1| - 1.3e-11 44.4 8.8 1.3e-05 25.2 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476387|ref|YP_004615528.1| - 2.8e-11 42.8 12.4 2.2e-05 24.3 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336476387|ref|YP_004615528.1| - 3.5e-11 43.5 6.7 5e-11 43.0 6.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336476387|ref|YP_004615528.1| - 1.4e-10 40.7 16.5 1.1e-05 25.3 2.1 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336476387|ref|YP_004615528.1| - 5.6e-10 39.2 18.0 1.1e-07 31.9 9.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476387|ref|YP_004615528.1| - 2.6e-09 36.8 12.1 7.5e-05 22.9 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|336476387|ref|YP_004615528.1| - 6.6e-09 36.1 5.3 1.3e-08 35.1 5.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336476387|ref|YP_004615528.1| - 3.3e-07 31.2 22.6 0.0015 19.4 2.1 2.2 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|336476387|ref|YP_004615528.1| - 1.6e-06 28.5 6.6 4.3e-06 27.2 6.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336476387|ref|YP_004615528.1| - 7.1e-06 26.5 15.7 0.0022 18.5 3.6 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|336476387|ref|YP_004615528.1| - 2e-05 25.2 10.3 0.029 15.1 1.5 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|336476387|ref|YP_004615528.1| - 2.5e-05 25.0 9.7 0.023 15.6 0.8 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336476387|ref|YP_004615528.1| - 8.3e-05 23.3 16.4 0.019 15.9 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336476387|ref|YP_004615528.1| - 0.00012 22.2 10.9 0.015 15.4 2.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|336476387|ref|YP_004615528.1| - 0.053 13.3 8.7 0.62 9.8 8.7 2.0 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF678 PF05077.12 gi|336476387|ref|YP_004615528.1| - 0.91 9.7 5.6 10 6.3 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF678) ADD_DNMT3 PF17980.1 gi|336476387|ref|YP_004615528.1| - 1.5 8.9 8.7 5.8 7.0 0.7 2.3 2 0 0 2 2 2 0 Cysteine rich ADD domain in DNMT3 CBFD_NFYB_HMF PF00808.23 gi|336476388|ref|YP_004615529.1| - 9.3e-17 61.1 0.3 1.1e-16 60.9 0.3 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|336476388|ref|YP_004615529.1| - 2.3e-09 37.7 0.1 2.7e-09 37.5 0.1 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TFIID-31kDa PF02291.15 gi|336476388|ref|YP_004615529.1| - 1.9e-06 28.0 0.0 2.3e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-S PF15630.6 gi|336476388|ref|YP_004615529.1| - 7e-06 26.3 0.0 8.2e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein CENP-T_C PF15511.6 gi|336476388|ref|YP_004615529.1| - 8.7e-06 25.8 0.0 9.1e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold Bromo_TP PF07524.13 gi|336476388|ref|YP_004615529.1| - 8.9e-06 25.6 0.0 1e-05 25.4 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TAF PF02969.17 gi|336476388|ref|YP_004615529.1| - 5.4e-05 23.3 0.2 5.6e-05 23.2 0.2 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-18kDa PF02269.16 gi|336476388|ref|YP_004615529.1| - 0.0021 18.0 0.0 0.0024 17.9 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit DUF1931 PF09123.11 gi|336476388|ref|YP_004615529.1| - 0.034 14.3 0.2 0.036 14.2 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) Cnd3 PF12719.7 gi|336476388|ref|YP_004615529.1| - 0.067 12.4 0.0 0.067 12.4 0.0 1.0 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain PCP_red PF08369.10 gi|336476388|ref|YP_004615529.1| - 0.3 11.3 2.7 2.3 8.5 0.2 2.2 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit tRNA_anti-codon PF01336.25 gi|336476389|ref|YP_004615530.1| - 2.3e-05 24.3 3.1 0.031 14.3 0.1 3.4 3 1 1 4 4 4 2 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|336476389|ref|YP_004615530.1| - 0.018 14.7 0.3 0.1 12.3 0.0 2.2 3 0 0 3 3 3 0 Cell division control protein 24, OB domain 3 RMI1_C PF16099.5 gi|336476389|ref|YP_004615530.1| - 0.079 12.8 0.5 0.25 11.2 0.1 1.9 2 0 0 2 2 2 0 Recq-mediated genome instability protein 1, C-terminal OB-fold CDP-OH_P_transf PF01066.21 gi|336476391|ref|YP_004615532.1| - 8e-14 52.2 3.9 8e-14 52.2 3.9 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PurS PF02700.14 gi|336476392|ref|YP_004615533.1| - 1.8e-26 92.1 0.1 1.9e-26 92.0 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF2184 PF09950.9 gi|336476392|ref|YP_004615533.1| - 0.0092 15.4 0.1 0.011 15.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2184) SKA2 PF16740.5 gi|336476392|ref|YP_004615533.1| - 0.12 12.2 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 GATase_5 PF13507.6 gi|336476393|ref|YP_004615534.1| - 6.1e-43 146.8 0.0 7.2e-43 146.6 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|336476393|ref|YP_004615534.1| - 5.6e-10 39.3 0.0 8.2e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|336476393|ref|YP_004615534.1| - 8.6e-10 38.5 0.0 1.8e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|336476393|ref|YP_004615534.1| - 1.5e-07 31.4 0.0 4.2e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|336476393|ref|YP_004615534.1| - 0.00026 20.9 0.0 0.00084 19.2 0.0 1.8 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|336476393|ref|YP_004615534.1| - 0.0074 16.1 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 RNase_HII PF01351.18 gi|336476394|ref|YP_004615535.1| - 1.1e-49 169.0 0.1 1.3e-49 168.8 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII DUF2119 PF09892.9 gi|336476394|ref|YP_004615535.1| - 0.013 14.9 1.0 0.045 13.1 0.1 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2119) T2SSF PF00482.23 gi|336476395|ref|YP_004615536.1| - 5.5e-34 116.8 0.4 4.5e-17 62.2 0.0 4.4 6 0 0 6 6 6 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|336476395|ref|YP_004615536.1| - 0.16 10.7 14.2 1.6 7.4 0.2 3.4 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) Tmemb_9 PF05434.11 gi|336476395|ref|YP_004615536.1| - 2.3 8.1 8.8 2.4 8.0 1.0 3.2 3 0 0 3 3 3 0 TMEM9 T2SSE PF00437.20 gi|336476396|ref|YP_004615537.1| - 2.2e-51 174.5 0.0 6.1e-51 173.1 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF4048 PF13257.6 gi|336476396|ref|YP_004615537.1| - 0.0096 15.8 8.3 0.0096 15.8 8.3 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4048) DUF3484 PF11983.8 gi|336476396|ref|YP_004615537.1| - 0.15 13.2 0.8 0.43 11.7 0.8 1.8 1 0 0 1 1 1 0 Membrane-attachment and polymerisation-promoting switch tRNA_synthFbeta PF17759.1 gi|336476397|ref|YP_004615538.1| - 2.4e-41 141.6 0.0 3.1e-41 141.2 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|336476397|ref|YP_004615538.1| - 2.7e-17 62.8 0.8 6.2e-17 61.7 0.8 1.7 1 0 0 1 1 1 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|336476397|ref|YP_004615538.1| - 1.7e-14 53.8 0.0 3.1e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.20 gi|336476397|ref|YP_004615538.1| - 0.00025 20.6 0.1 0.00073 19.1 0.1 1.8 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) PhetRS_B1 PF18262.1 gi|336476397|ref|YP_004615538.1| - 0.0023 18.1 0.0 0.44 10.8 0.0 2.7 2 0 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain DUF4265 PF14085.6 gi|336476397|ref|YP_004615538.1| - 0.043 13.8 0.1 3.3 7.7 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4265) Peptidase_M50 PF02163.22 gi|336476398|ref|YP_004615539.1| - 8.9e-23 80.8 0.0 3.1e-22 79.1 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|336476398|ref|YP_004615539.1| - 4.4e-20 71.8 0.3 1.5e-09 38.0 0.0 2.3 2 0 0 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|336476398|ref|YP_004615539.1| - 2.9e-08 33.4 0.1 1.7e-05 24.6 0.0 2.4 2 0 0 2 2 2 2 PDZ domain GRASP55_65 PF04495.14 gi|336476398|ref|YP_004615539.1| - 2.5e-06 27.9 0.0 1.2e-05 25.7 0.0 2.0 1 1 1 2 2 2 1 GRASP55/65 PDZ-like domain PDZ_1 PF12812.7 gi|336476398|ref|YP_004615539.1| - 0.00011 22.1 0.1 0.54 10.3 0.0 2.5 2 0 0 2 2 2 2 PDZ-like domain PDZ PF00595.24 gi|336476398|ref|YP_004615539.1| - 0.0004 20.7 2.0 0.0031 17.8 0.1 2.8 3 0 0 3 3 3 1 PDZ domain Tricorn_PDZ PF14685.6 gi|336476398|ref|YP_004615539.1| - 0.0011 18.9 0.3 0.029 14.3 0.0 2.2 2 0 0 2 2 2 1 Tricorn protease PDZ domain TMEM43 PF07787.12 gi|336476398|ref|YP_004615539.1| - 1.3 8.4 3.4 0.49 9.7 0.3 1.9 2 0 0 2 2 2 0 Transmembrane protein 43 CutA1 PF03091.15 gi|336476399|ref|YP_004615540.1| - 4.1e-33 113.2 0.1 4.5e-33 113.0 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Fumerase PF05681.14 gi|336476400|ref|YP_004615541.1| - 9.2e-100 333.5 0.2 1.1e-99 333.3 0.2 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) DBI_PRT PF02277.17 gi|336476400|ref|YP_004615541.1| - 0.065 12.5 0.1 6.3 5.9 0.1 2.2 2 0 0 2 2 2 0 Phosphoribosyltransferase Fumerase_C PF05683.12 gi|336476401|ref|YP_004615542.1| - 1.5e-44 151.8 0.0 1.7e-44 151.6 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus T2SSE PF00437.20 gi|336476402|ref|YP_004615543.1| - 3.4e-51 173.9 0.0 5.7e-51 173.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Microtub_bd PF16796.5 gi|336476402|ref|YP_004615543.1| - 0.0013 18.7 0.1 0.019 14.9 0.0 2.5 2 0 0 2 2 2 1 Microtubule binding ABC_tran PF00005.27 gi|336476402|ref|YP_004615543.1| - 0.076 13.5 0.2 1.6 9.2 0.0 2.8 3 0 0 3 3 3 0 ABC transporter AAA_29 PF13555.6 gi|336476402|ref|YP_004615543.1| - 0.095 12.5 0.0 0.46 10.3 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain DNA_ligase_OB PF03120.16 gi|336476402|ref|YP_004615543.1| - 0.16 11.8 0.1 3.6 7.5 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase OB-fold domain AAA_31 PF13614.6 gi|336476403|ref|YP_004615544.1| - 3.4e-21 75.9 0.1 6.4e-21 75.0 0.1 1.5 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|336476403|ref|YP_004615544.1| - 3.7e-21 75.5 0.0 8.3e-21 74.4 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|336476403|ref|YP_004615544.1| - 4e-15 55.9 5.4 1.1e-13 51.2 5.4 2.6 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|336476403|ref|YP_004615544.1| - 7e-10 38.8 2.3 4e-05 23.2 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|336476403|ref|YP_004615544.1| - 1.7e-08 34.3 0.0 6.6e-08 32.3 0.0 1.8 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|336476403|ref|YP_004615544.1| - 9.1e-08 31.7 3.2 2.8e-06 26.8 1.0 3.2 1 1 1 3 3 3 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|336476403|ref|YP_004615544.1| - 1.6e-06 27.5 7.3 8.2e-05 21.9 2.2 2.8 2 1 0 2 2 2 2 Anion-transporting ATPase AAA_24 PF13479.6 gi|336476403|ref|YP_004615544.1| - 6.3e-06 26.0 0.2 1.3e-05 25.0 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|336476403|ref|YP_004615544.1| - 0.00034 20.3 0.1 0.0015 18.2 0.4 1.8 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|336476403|ref|YP_004615544.1| - 0.012 14.9 0.9 0.07 12.4 0.4 2.1 2 0 0 2 2 2 0 VirC1 protein CLP1_P PF16575.5 gi|336476403|ref|YP_004615544.1| - 0.025 14.4 0.2 0.077 12.8 0.2 1.8 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_26 PF13500.6 gi|336476403|ref|YP_004615544.1| - 0.046 13.5 0.1 0.091 12.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|336476403|ref|YP_004615544.1| - 0.055 13.1 2.2 2.9 7.5 1.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain FTHFS PF01268.19 gi|336476403|ref|YP_004615544.1| - 0.075 11.2 0.8 0.13 10.4 0.8 1.3 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase HHH PF00633.23 gi|336476404|ref|YP_004615545.1| - 0.0081 16.0 0.3 0.038 13.9 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif PhnH PF05845.12 gi|336476404|ref|YP_004615545.1| - 0.038 13.7 0.0 0.059 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnH) RACo_C_ter PF14574.6 gi|336476405|ref|YP_004615546.1| - 5.9e-74 248.4 4.5 1.7e-73 246.9 4.5 1.7 1 1 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|336476405|ref|YP_004615546.1| - 9.7e-13 48.1 0.0 5.9e-12 45.6 0.0 2.3 2 1 0 2 2 2 1 RACo middle region Fer4_9 PF13187.6 gi|336476405|ref|YP_004615546.1| - 1.4e-06 28.4 9.5 2.5e-06 27.5 9.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476405|ref|YP_004615546.1| - 2e-06 27.8 9.9 3.8e-06 26.9 9.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476405|ref|YP_004615546.1| - 2.4e-06 28.0 9.9 4.6e-06 27.1 9.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336476405|ref|YP_004615546.1| - 2.9e-06 26.8 13.6 0.0002 21.0 3.2 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336476405|ref|YP_004615546.1| - 3.6e-06 26.8 12.4 2.9e-05 24.0 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336476405|ref|YP_004615546.1| - 9.9e-06 25.6 8.5 2e-05 24.6 8.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336476405|ref|YP_004615546.1| - 0.00051 20.9 11.4 0.094 13.7 2.0 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|336476405|ref|YP_004615546.1| - 0.00057 20.3 3.6 0.081 13.4 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476405|ref|YP_004615546.1| - 0.027 14.6 11.4 0.063 13.4 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336476405|ref|YP_004615546.1| - 0.076 13.6 10.6 0.11 13.1 1.6 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476405|ref|YP_004615546.1| - 0.079 13.5 11.5 0.08 13.5 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|336476405|ref|YP_004615546.1| - 0.42 11.7 13.7 3.1 8.9 2.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Hydantoinase_A PF01968.18 gi|336476406|ref|YP_004615547.1| - 8.4e-32 110.6 1.2 9.7e-29 100.5 0.1 3.0 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|336476406|ref|YP_004615547.1| - 1.2e-28 100.0 6.8 1.8e-27 96.2 0.8 3.5 3 1 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|336476406|ref|YP_004615547.1| - 3.2e-05 22.7 0.9 0.042 12.4 0.2 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|336476406|ref|YP_004615547.1| - 7.7e-05 22.3 0.0 0.0004 20.0 0.0 2.1 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|336476406|ref|YP_004615547.1| - 0.016 14.7 0.0 0.045 13.2 0.0 1.8 1 0 0 1 1 1 0 ROK family StbA PF06406.11 gi|336476406|ref|YP_004615547.1| - 0.028 13.7 0.3 0.25 10.5 0.0 2.2 2 0 0 2 2 2 0 StbA protein MgtE PF01769.16 gi|336476407|ref|YP_004615548.1| - 1.3e-26 93.4 10.2 1.3e-26 93.4 10.2 1.9 1 1 1 2 2 2 1 Divalent cation transporter CBS PF00571.28 gi|336476407|ref|YP_004615548.1| - 1.7e-13 50.8 1.3 7.3e-08 32.7 0.6 2.5 2 0 0 2 2 2 2 CBS domain DUF1638 PF07796.11 gi|336476408|ref|YP_004615549.1| - 2e-36 125.5 0.1 2.6e-36 125.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) DUF1638 PF07796.11 gi|336476409|ref|YP_004615550.1| - 6.4e-37 127.1 0.1 9.8e-37 126.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Hydantoinase_A PF01968.18 gi|336476410|ref|YP_004615551.1| - 9.5e-31 107.1 2.6 3.2e-30 105.4 0.1 2.6 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|336476410|ref|YP_004615551.1| - 6.6e-30 104.1 7.8 9e-27 93.9 2.7 3.4 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|336476410|ref|YP_004615551.1| - 9.8e-07 27.7 2.3 0.007 15.0 0.5 2.3 2 0 0 2 2 2 2 MutL protein ROK PF00480.20 gi|336476410|ref|YP_004615551.1| - 0.028 13.9 1.4 0.054 13.0 0.1 2.1 3 0 0 3 3 3 0 ROK family StbA PF06406.11 gi|336476410|ref|YP_004615551.1| - 0.048 12.9 0.0 0.11 11.7 0.0 1.6 1 0 0 1 1 1 0 StbA protein BcrAD_BadFG PF01869.20 gi|336476410|ref|YP_004615551.1| - 0.05 13.1 2.2 0.41 10.1 1.2 2.7 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family MTTB PF06253.11 gi|336476411|ref|YP_004615552.1| - 2.2e-58 197.5 0.0 2.6e-58 197.2 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) MTTB PF06253.11 gi|336476412|ref|YP_004615553.1| - 2.6e-27 95.0 0.0 2.9e-27 94.8 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) B12-binding PF02310.19 gi|336476413|ref|YP_004615554.1| - 2.2e-23 82.6 0.8 4e-23 81.7 0.8 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|336476413|ref|YP_004615554.1| - 1.5e-20 73.4 0.7 1.5e-20 73.4 0.7 2.3 3 0 0 3 3 3 1 B12 binding domain UPF0180 PF03698.13 gi|336476413|ref|YP_004615554.1| - 0.029 14.6 0.7 0.096 12.9 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Fer4_13 PF13370.6 gi|336476414|ref|YP_004615555.1| - 1.9e-18 66.8 8.3 2.2e-18 66.5 8.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|336476414|ref|YP_004615555.1| - 3.3e-05 24.5 5.2 4.9e-05 24.0 5.2 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|336476414|ref|YP_004615555.1| - 0.0017 18.4 1.7 0.0037 17.4 0.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336476414|ref|YP_004615555.1| - 0.029 14.5 1.7 0.047 13.8 1.7 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|336476414|ref|YP_004615555.1| - 0.034 14.3 2.8 0.048 13.9 2.8 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain PHP_C PF13263.6 gi|336476415|ref|YP_004615556.1| - 7.2e-19 67.3 0.0 1.3e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|336476415|ref|YP_004615556.1| - 2.3e-07 31.2 0.1 4.3e-07 30.4 0.1 1.6 1 1 0 1 1 1 1 PHP domain GTP-bdg_N PF13167.6 gi|336476416|ref|YP_004615557.1| - 2.8e-23 82.4 0.1 6.1e-23 81.3 0.1 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|336476416|ref|YP_004615557.1| - 1.6e-21 76.5 0.0 4.7e-21 75.0 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|336476416|ref|YP_004615557.1| - 7.3e-14 52.1 1.3 1.5e-13 51.2 1.3 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 gi|336476416|ref|YP_004615557.1| - 1e-09 38.1 0.1 2.2e-09 37.0 0.1 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|336476416|ref|YP_004615557.1| - 1.5e-07 31.3 0.1 3.8e-07 30.1 0.1 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain GTP_EFTU PF00009.27 gi|336476416|ref|YP_004615557.1| - 8.6e-06 25.4 0.1 0.00064 19.3 0.0 2.7 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|336476416|ref|YP_004615557.1| - 1.2e-05 25.3 1.5 0.037 13.9 0.1 3.1 3 1 0 3 3 3 2 RsgA GTPase cobW PF02492.19 gi|336476416|ref|YP_004615557.1| - 0.00023 20.8 0.8 0.0037 16.9 0.8 2.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.21 gi|336476416|ref|YP_004615557.1| - 0.0014 18.1 0.1 0.0033 16.9 0.1 1.7 1 0 0 1 1 1 1 ADP-ribosylation factor family NOG1 PF06858.14 gi|336476416|ref|YP_004615557.1| - 0.0075 16.0 0.3 0.028 14.2 0.3 2.0 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MnmE_helical PF12631.7 gi|336476416|ref|YP_004615557.1| - 0.011 15.9 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 MnmE helical domain AAA_14 PF13173.6 gi|336476416|ref|YP_004615557.1| - 0.037 14.1 0.1 3.9 7.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain GBP PF02263.19 gi|336476416|ref|YP_004615557.1| - 0.059 12.6 0.2 1.4 8.2 0.1 2.3 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain Roc PF08477.13 gi|336476416|ref|YP_004615557.1| - 0.14 12.4 0.1 1.8 8.8 0.1 2.4 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_23 PF13476.6 gi|336476416|ref|YP_004615557.1| - 3.8 8.0 6.9 37 4.7 3.7 2.4 2 0 0 2 2 2 0 AAA domain DUF2209 PF09974.9 gi|336476417|ref|YP_004615558.1| - 6.3e-53 178.2 1.1 7.1e-53 178.1 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) DUF2982 PF11201.8 gi|336476417|ref|YP_004615558.1| - 0.028 14.0 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2982) tRNA_int_endo PF01974.17 gi|336476418|ref|YP_004615559.1| - 4.2e-48 161.3 1.4 1.2e-24 86.2 0.1 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|336476418|ref|YP_004615559.1| - 5.3e-39 131.7 2.9 4.2e-21 74.4 0.3 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.10 gi|336476418|ref|YP_004615559.1| - 0.001 19.4 0.0 0.002 18.4 0.0 1.5 1 0 0 1 1 1 1 Sen15 protein GATase_3 PF07685.14 gi|336476419|ref|YP_004615560.1| - 7.1e-42 143.2 1.0 1.1e-41 142.6 1.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|336476419|ref|YP_004615560.1| - 3.6e-17 62.9 0.2 1.6e-14 54.2 0.2 2.4 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|336476419|ref|YP_004615560.1| - 9.5e-17 61.3 0.0 1.6e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|336476419|ref|YP_004615560.1| - 0.04 13.8 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SNO PF01174.19 gi|336476419|ref|YP_004615560.1| - 0.15 11.9 0.0 0.38 10.6 0.0 1.7 1 1 0 1 1 1 0 SNO glutamine amidotransferase family Fer4_NifH PF00142.18 gi|336476420|ref|YP_004615561.1| - 2.3e-91 306.0 1.3 2.8e-91 305.7 1.3 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|336476420|ref|YP_004615561.1| - 3.6e-14 52.8 0.0 9.3e-14 51.5 0.0 1.6 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|336476420|ref|YP_004615561.1| - 7.4e-11 42.2 0.0 1.2e-10 41.5 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|336476420|ref|YP_004615561.1| - 1.6e-09 37.9 0.2 8.3e-09 35.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|336476420|ref|YP_004615561.1| - 1.3e-07 31.1 0.4 3.7e-07 29.6 0.1 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|336476420|ref|YP_004615561.1| - 4.9e-05 23.1 0.0 7.6e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|336476420|ref|YP_004615561.1| - 0.00026 20.4 0.1 0.012 15.0 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ MeaB PF03308.16 gi|336476420|ref|YP_004615561.1| - 0.00041 19.4 0.1 0.00064 18.8 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|336476420|ref|YP_004615561.1| - 0.0013 18.4 0.2 0.0047 16.6 0.0 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|336476420|ref|YP_004615561.1| - 0.0053 17.2 0.0 0.054 13.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|336476420|ref|YP_004615561.1| - 0.0063 16.8 0.1 0.42 10.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|336476420|ref|YP_004615561.1| - 0.044 13.0 0.1 0.076 12.2 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|336476420|ref|YP_004615561.1| - 0.047 13.3 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|336476420|ref|YP_004615561.1| - 0.1 12.3 0.2 0.18 11.5 0.2 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein ATP_bind_1 PF03029.17 gi|336476420|ref|YP_004615561.1| - 0.11 12.3 0.1 3.6 7.3 0.1 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 gi|336476420|ref|YP_004615561.1| - 0.11 13.0 0.0 0.34 11.3 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_7 PF12775.7 gi|336476420|ref|YP_004615561.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|336476420|ref|YP_004615561.1| - 0.21 11.3 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Oxidored_nitro PF00148.19 gi|336476421|ref|YP_004615562.1| - 2.4e-16 59.5 0.1 3.4e-16 59.0 0.1 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Mur_ligase_M PF08245.12 gi|336476422|ref|YP_004615563.1| - 0.0075 16.3 0.9 0.082 12.9 0.9 2.3 1 1 0 1 1 1 1 Mur ligase middle domain CbiX PF01903.17 gi|336476423|ref|YP_004615564.1| - 4.1e-29 101.0 0.0 4.7e-29 100.9 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|336476423|ref|YP_004615564.1| - 9.3e-07 28.4 0.0 9.7e-07 28.4 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|336476423|ref|YP_004615564.1| - 0.00059 19.0 0.0 0.00075 18.7 0.0 1.1 1 0 0 1 1 1 1 Ferrochelatase DUF2150 PF09920.9 gi|336476424|ref|YP_004615565.1| - 6.6e-72 241.4 6.1 7.6e-72 241.3 6.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) UPF0179 PF03684.13 gi|336476425|ref|YP_004615566.1| - 1.8e-52 176.9 7.8 2e-52 176.8 7.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|336476425|ref|YP_004615566.1| - 0.0034 17.6 4.9 0.016 15.4 0.2 2.1 2 0 0 2 2 2 2 Transposase DDE domain Fe-ADH_2 PF13685.6 gi|336476426|ref|YP_004615567.1| - 1e-69 235.0 7.0 1.3e-69 234.7 7.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|336476426|ref|YP_004615567.1| - 3.6e-26 91.9 7.6 3.1e-25 88.8 7.6 1.9 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|336476426|ref|YP_004615567.1| - 2e-12 46.8 0.6 4.9e-12 45.6 0.6 1.5 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF63 PF01889.17 gi|336476427|ref|YP_004615568.1| - 1.6e-101 340.1 25.7 1.8e-101 339.9 25.7 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 SpoIIM PF01944.17 gi|336476428|ref|YP_004615569.1| - 6.2e-36 123.8 17.9 8e-36 123.4 17.9 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M DUF1297 PF06973.12 gi|336476429|ref|YP_004615570.1| - 1.7e-79 265.8 0.0 2.3e-79 265.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|336476429|ref|YP_004615570.1| - 8.9e-45 151.6 0.0 1.4e-44 151.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) GTP_EFTU PF00009.27 gi|336476430|ref|YP_004615571.1| - 8.6e-32 110.2 2.7 5.9e-31 107.5 2.7 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|336476430|ref|YP_004615571.1| - 1.2e-31 108.8 0.4 2.9e-31 107.6 0.4 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|336476430|ref|YP_004615571.1| - 4.5e-06 27.0 0.8 1.3e-05 25.4 0.8 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|336476430|ref|YP_004615571.1| - 7.4e-06 26.0 1.4 9.8e-05 22.3 0.3 2.3 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|336476430|ref|YP_004615571.1| - 7.6e-05 22.8 0.0 0.00023 21.2 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|336476430|ref|YP_004615571.1| - 0.00046 20.2 0.1 0.0037 17.3 0.2 2.2 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|336476430|ref|YP_004615571.1| - 0.0034 17.1 3.8 1.1 9.0 0.6 2.6 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|336476430|ref|YP_004615571.1| - 0.0051 16.4 2.3 1 8.8 0.7 2.9 1 1 1 2 2 2 2 Ferrous iron transport protein B Nop10p PF04135.12 gi|336476430|ref|YP_004615571.1| - 0.037 14.1 0.6 0.066 13.3 0.6 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family cobW PF02492.19 gi|336476430|ref|YP_004615571.1| - 0.043 13.4 1.2 0.78 9.3 0.2 2.8 2 1 1 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Phage_Gp17 PF17549.2 gi|336476430|ref|YP_004615571.1| - 0.046 13.7 0.0 0.085 12.9 0.0 1.4 1 0 0 1 1 1 0 Gene Product 17 Roc PF08477.13 gi|336476430|ref|YP_004615571.1| - 0.098 12.9 0.1 7.5 6.8 0.1 2.3 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase PIN_9 PF18477.1 gi|336476431|ref|YP_004615572.1| - 2.1e-45 153.8 1.1 2.4e-45 153.6 1.1 1.0 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|336476431|ref|YP_004615572.1| - 0.0062 16.8 0.3 0.018 15.3 0.3 1.8 1 1 0 1 1 1 1 PIN domain SHS2_Rpb7-N PF03876.17 gi|336476432|ref|YP_004615573.1| - 2.2e-19 69.6 0.1 3.8e-19 68.8 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|336476432|ref|YP_004615573.1| - 1.5e-12 47.7 0.2 3.6e-12 46.4 0.2 1.7 1 0 0 1 1 1 1 S1 RNA binding domain DUF826 PF05696.11 gi|336476432|ref|YP_004615573.1| - 0.00023 21.2 0.1 0.00044 20.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF826) RNA_pol_Rbc25 PF08292.12 gi|336476432|ref|YP_004615573.1| - 0.029 14.6 0.0 0.045 14.0 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|336476433|ref|YP_004615574.1| - 3.8e-14 52.5 0.1 4.7e-14 52.2 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger Prok-RING_4 PF14447.6 gi|336476433|ref|YP_004615574.1| - 0.00072 19.4 0.8 0.00098 18.9 0.8 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 4 zf-RRN7 PF11781.8 gi|336476433|ref|YP_004615574.1| - 0.0042 16.7 1.7 0.46 10.2 0.1 2.1 2 0 0 2 2 2 2 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ribbon_3 PF13248.6 gi|336476433|ref|YP_004615574.1| - 0.0083 15.5 2.3 0.0095 15.3 0.3 1.9 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|336476433|ref|YP_004615574.1| - 0.0092 15.5 0.2 0.41 10.2 0.0 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding zf-C3HC4_3 PF13920.6 gi|336476433|ref|YP_004615574.1| - 0.021 14.7 1.8 0.031 14.1 1.8 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) MCR PF18509.1 gi|336476433|ref|YP_004615574.1| - 0.033 13.8 0.2 0.054 13.1 0.2 1.3 1 0 0 1 1 1 0 Magnetochrome domain HypA PF01155.19 gi|336476433|ref|YP_004615574.1| - 0.066 13.2 0.2 0.073 13.1 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|336476433|ref|YP_004615574.1| - 0.94 9.7 4.5 9.1 6.5 4.5 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|336476433|ref|YP_004615574.1| - 7.6 6.9 7.8 3.2 8.1 1.7 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF359 PF04019.12 gi|336476434|ref|YP_004615575.1| - 3.2e-41 139.9 0.1 4.1e-41 139.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.19 gi|336476435|ref|YP_004615576.1| - 2.5e-27 94.6 0.1 3e-27 94.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|336476436|ref|YP_004615577.1| - 4.1e-22 78.1 2.3 4.6e-22 77.9 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.6 gi|336476436|ref|YP_004615577.1| - 0.00023 21.0 5.7 0.00076 19.3 4.6 2.1 1 1 1 2 2 2 2 Nudix N-terminal Ribosomal_L37e PF01907.19 gi|336476436|ref|YP_004615577.1| - 0.00028 21.0 1.6 0.00032 20.8 1.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e IBR PF01485.21 gi|336476436|ref|YP_004615577.1| - 0.00078 19.6 0.3 0.0008 19.6 0.3 1.1 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain DUF1451 PF07295.11 gi|336476436|ref|YP_004615577.1| - 0.0018 18.4 0.9 0.0018 18.4 0.9 1.0 1 0 0 1 1 1 1 Zinc-ribbon containing domain DZR PF12773.7 gi|336476436|ref|YP_004615577.1| - 0.0021 18.0 0.5 0.003 17.5 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|336476436|ref|YP_004615577.1| - 0.0051 16.4 7.8 0.028 14.1 7.8 2.0 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain MqsA_antitoxin PF15731.5 gi|336476436|ref|YP_004615577.1| - 0.0065 16.6 0.2 0.0072 16.4 0.2 1.2 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA GFA PF04828.14 gi|336476436|ref|YP_004615577.1| - 0.0067 16.8 1.4 0.029 14.7 0.0 1.9 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.6 gi|336476436|ref|YP_004615577.1| - 0.012 15.3 5.3 0.18 11.6 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|336476436|ref|YP_004615577.1| - 0.025 14.6 0.4 0.026 14.6 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|336476436|ref|YP_004615577.1| - 0.045 13.6 5.4 0.21 11.5 5.4 1.8 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|336476436|ref|YP_004615577.1| - 0.046 13.7 3.6 0.089 12.8 3.5 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|336476436|ref|YP_004615577.1| - 0.047 13.8 5.2 0.16 12.2 0.3 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.12 gi|336476436|ref|YP_004615577.1| - 0.049 13.1 2.6 0.082 12.4 2.6 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|336476436|ref|YP_004615577.1| - 0.064 13.2 1.9 0.086 12.8 1.9 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PriA_CRR PF18319.1 gi|336476436|ref|YP_004615577.1| - 0.091 12.8 1.8 0.42 10.6 1.8 2.0 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain zf_UBZ PF18439.1 gi|336476436|ref|YP_004615577.1| - 0.091 12.4 2.0 0.68 9.6 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_13 PF09855.9 gi|336476436|ref|YP_004615577.1| - 0.12 12.6 3.5 0.24 11.6 0.4 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.6 gi|336476436|ref|YP_004615577.1| - 0.19 11.2 6.7 0.33 10.4 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Peptidase_M22 PF00814.25 gi|336476437|ref|YP_004615578.1| - 3.4e-89 299.2 0.0 4.5e-89 298.8 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.23 gi|336476437|ref|YP_004615578.1| - 6.8e-09 36.0 0.0 6.3e-06 26.3 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.22 gi|336476437|ref|YP_004615578.1| - 1.5e-08 34.5 0.0 2.4e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|336476437|ref|YP_004615578.1| - 7.4e-08 32.0 0.3 7.3e-07 28.8 0.3 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|336476437|ref|YP_004615578.1| - 2.9e-07 30.1 0.4 5.9e-07 29.1 0.4 1.5 1 1 0 1 1 1 1 Protein kinase domain Choline_kinase PF01633.20 gi|336476437|ref|YP_004615578.1| - 0.00066 19.3 0.1 0.0012 18.5 0.1 1.4 1 0 0 1 1 1 1 Choline/ethanolamine kinase Carbam_trans_N PF02543.15 gi|336476437|ref|YP_004615578.1| - 0.0043 16.7 0.0 0.0099 15.6 0.0 1.5 1 0 0 1 1 1 1 Carbamoyltransferase N-terminus DUF1679 PF07914.11 gi|336476437|ref|YP_004615578.1| - 0.0068 15.3 0.0 0.0098 14.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) Pkinase_Tyr PF07714.17 gi|336476437|ref|YP_004615578.1| - 0.0081 15.5 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase EcKinase PF02958.20 gi|336476437|ref|YP_004615578.1| - 0.016 14.6 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Ecdysteroid kinase WaaY PF06176.11 gi|336476437|ref|YP_004615578.1| - 0.13 11.9 0.1 0.26 10.9 0.1 1.5 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) APH_6_hur PF04655.14 gi|336476437|ref|YP_004615578.1| - 0.17 11.2 0.0 0.31 10.4 0.0 1.4 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase Ham1p_like PF01725.16 gi|336476438|ref|YP_004615579.1| - 1.9e-53 181.2 0.0 2.2e-53 181.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Cyclase PF04199.13 gi|336476439|ref|YP_004615580.1| - 2.1e-18 66.9 0.0 2.6e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PHP PF02811.19 gi|336476440|ref|YP_004615581.1| - 6.4e-10 39.6 0.1 9.6e-10 39.0 0.1 1.4 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|336476440|ref|YP_004615581.1| - 1.4e-05 24.6 0.0 2.3e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 RNase P subunit p30 DUF3280 PF11684.8 gi|336476440|ref|YP_004615581.1| - 0.078 13.4 0.8 2.3 8.6 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2380) DDE_Tnp_1 PF01609.21 gi|336476441|ref|YP_004615582.1| - 1.7e-18 67.1 2.8 2.9e-18 66.3 2.8 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|336476441|ref|YP_004615582.1| - 0.008 16.5 0.2 0.026 14.9 0.2 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|336476441|ref|YP_004615582.1| - 0.014 15.4 0.1 0.04 13.9 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|336476441|ref|YP_004615582.1| - 0.016 15.2 0.4 0.035 14.1 0.4 1.5 1 0 0 1 1 1 0 Transposase DDE domain FtsJ PF01728.19 gi|336476442|ref|YP_004615583.1| - 1.9e-59 200.7 0.0 2.4e-59 200.4 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|336476442|ref|YP_004615583.1| - 4.6e-13 49.0 1.3 8.2e-13 48.2 1.3 1.4 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.6 gi|336476442|ref|YP_004615583.1| - 0.0001 22.2 0.0 0.00024 21.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336476442|ref|YP_004615583.1| - 0.0086 15.9 0.0 0.2 11.5 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336476442|ref|YP_004615583.1| - 0.085 13.6 0.2 0.51 11.1 0.2 2.4 1 1 1 2 2 2 0 Methyltransferase domain acVLRF1 PF18859.1 gi|336476444|ref|YP_004615585.1| - 1.9e-16 60.6 0.0 5.2e-16 59.1 0.0 1.7 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|336476444|ref|YP_004615585.1| - 4.5e-09 36.7 0.0 1.3e-08 35.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_2 PF03464.15 gi|336476444|ref|YP_004615585.1| - 1.1e-08 35.4 0.1 2.7e-08 34.2 0.0 1.7 2 0 0 2 2 1 1 eRF1 domain 2 TMF_TATA_bd PF12325.8 gi|336476444|ref|YP_004615585.1| - 0.0011 19.1 6.7 0.0011 19.1 6.7 1.8 2 0 0 2 2 1 1 TATA element modulatory factor 1 TATA binding Laminin_II PF06009.12 gi|336476444|ref|YP_004615585.1| - 0.0014 18.6 1.9 0.0027 17.7 1.9 1.4 1 0 0 1 1 1 1 Laminin Domain II TACC_C PF05010.14 gi|336476444|ref|YP_004615585.1| - 0.006 16.4 4.2 0.006 16.4 4.2 1.7 2 0 0 2 2 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal ATP-synt_DE PF00401.20 gi|336476444|ref|YP_004615585.1| - 0.013 15.7 3.2 0.037 14.3 3.2 1.8 1 0 0 1 1 1 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Pil1 PF13805.6 gi|336476444|ref|YP_004615585.1| - 0.014 14.9 1.1 0.019 14.5 1.1 1.3 1 0 0 1 1 1 0 Eisosome component PIL1 Spc7 PF08317.11 gi|336476444|ref|YP_004615585.1| - 0.014 14.3 6.0 0.024 13.5 6.0 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4472 PF14739.6 gi|336476444|ref|YP_004615585.1| - 0.015 16.0 5.2 0.015 16.0 5.2 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4472) TPR_MLP1_2 PF07926.12 gi|336476444|ref|YP_004615585.1| - 0.019 15.0 4.4 0.034 14.2 4.4 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Baculo_PEP_C PF04513.12 gi|336476444|ref|YP_004615585.1| - 0.026 14.6 1.4 0.088 12.9 1.2 1.9 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus HSBP1 PF06825.12 gi|336476444|ref|YP_004615585.1| - 0.032 14.1 2.8 0.032 14.1 2.8 3.1 3 0 0 3 3 3 0 Heat shock factor binding protein 1 Uso1_p115_C PF04871.13 gi|336476444|ref|YP_004615585.1| - 0.037 14.4 7.7 0.045 14.1 5.3 2.0 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF3584 PF12128.8 gi|336476444|ref|YP_004615585.1| - 0.045 11.3 3.4 0.062 10.8 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) HR1 PF02185.16 gi|336476444|ref|YP_004615585.1| - 0.051 13.7 7.3 0.18 12.0 7.0 2.1 1 1 0 1 1 1 0 Hr1 repeat Cep57_MT_bd PF06657.13 gi|336476444|ref|YP_004615585.1| - 0.051 14.0 4.7 0.12 12.8 4.7 1.6 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 LPP PF04728.13 gi|336476444|ref|YP_004615585.1| - 0.059 13.8 1.6 0.84 10.1 0.1 2.7 2 1 1 3 3 3 0 Lipoprotein leucine-zipper V_ATPase_I PF01496.19 gi|336476444|ref|YP_004615585.1| - 0.059 11.3 2.6 0.077 10.9 2.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Fez1 PF06818.15 gi|336476444|ref|YP_004615585.1| - 0.064 13.7 3.4 0.065 13.7 2.3 1.6 2 0 0 2 2 2 0 Fez1 Acyl-CoA_dh_1 PF00441.24 gi|336476444|ref|YP_004615585.1| - 0.13 12.5 0.4 18 5.5 0.0 2.2 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain ADIP PF11559.8 gi|336476444|ref|YP_004615585.1| - 0.18 11.9 6.3 0.36 10.9 4.0 2.2 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding FapA PF03961.13 gi|336476444|ref|YP_004615585.1| - 0.19 10.3 7.4 0.1 11.2 5.1 1.6 2 0 0 2 2 2 0 Flagellar Assembly Protein A Uds1 PF15456.6 gi|336476444|ref|YP_004615585.1| - 0.22 11.7 6.7 0.11 12.7 4.0 1.8 2 0 0 2 2 1 0 Up-regulated During Septation Csm1_N PF18504.1 gi|336476444|ref|YP_004615585.1| - 0.24 11.8 5.6 1.1 9.6 0.7 2.6 2 0 0 2 2 2 0 Csm1 N-terminal domain LUC7 PF03194.15 gi|336476444|ref|YP_004615585.1| - 0.3 10.7 5.9 0.42 10.2 3.7 2.0 2 0 0 2 2 2 0 LUC7 N_terminus BRE1 PF08647.11 gi|336476444|ref|YP_004615585.1| - 0.34 11.0 9.0 0.14 12.3 6.3 1.7 2 0 0 2 2 1 0 BRE1 E3 ubiquitin ligase Exonuc_VII_S PF02609.16 gi|336476444|ref|YP_004615585.1| - 0.36 10.9 3.4 10 6.3 0.6 2.8 2 0 0 2 2 2 0 Exonuclease VII small subunit Bacillus_HBL PF05791.11 gi|336476444|ref|YP_004615585.1| - 0.42 10.4 4.0 1.4 8.7 2.6 2.1 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF4200 PF13863.6 gi|336476444|ref|YP_004615585.1| - 0.46 10.9 9.8 1.1 9.6 9.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DUF724 PF05266.14 gi|336476444|ref|YP_004615585.1| - 0.49 10.2 5.1 1.1 9.0 5.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF724) MutS_IV PF05190.18 gi|336476444|ref|YP_004615585.1| - 0.51 10.7 0.1 0.51 10.7 0.1 2.7 3 0 0 3 3 2 0 MutS family domain IV Macoilin PF09726.9 gi|336476444|ref|YP_004615585.1| - 0.53 8.8 4.6 0.71 8.4 4.6 1.1 1 0 0 1 1 1 0 Macoilin family HMMR_N PF15905.5 gi|336476444|ref|YP_004615585.1| - 0.88 9.0 10.7 0.17 11.3 6.1 1.8 2 1 1 3 3 3 0 Hyaluronan mediated motility receptor N-terminal DUF16 PF01519.16 gi|336476444|ref|YP_004615585.1| - 0.9 10.1 5.9 15 6.1 0.4 2.8 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF2968 PF11180.8 gi|336476444|ref|YP_004615585.1| - 0.92 9.1 5.2 0.51 10.0 3.3 1.5 2 0 0 2 2 1 0 Protein of unknown function (DUF2968) XhlA PF10779.9 gi|336476444|ref|YP_004615585.1| - 1 9.6 13.2 13 6.1 6.9 3.4 2 1 1 3 3 2 0 Haemolysin XhlA DHR10 PF18595.1 gi|336476444|ref|YP_004615585.1| - 1.1 9.4 11.2 3.3 7.8 10.6 1.9 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain Cnn_1N PF07989.11 gi|336476444|ref|YP_004615585.1| - 4 7.7 9.2 1.9 8.7 5.7 2.4 3 0 0 3 3 1 0 Centrosomin N-terminal motif 1 DUF4164 PF13747.6 gi|336476444|ref|YP_004615585.1| - 7.5 6.9 11.1 44 4.4 8.7 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DFP PF04127.15 gi|336476445|ref|YP_004615586.1| - 1.6e-44 152.0 0.5 1e-42 146.1 0.1 2.3 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|336476445|ref|YP_004615586.1| - 3e-33 114.8 1.6 5.7e-33 113.9 1.6 1.5 1 0 0 1 1 1 1 Flavoprotein PdxA PF04166.12 gi|336476445|ref|YP_004615586.1| - 0.011 15.2 0.1 0.35 10.3 0.0 2.2 2 0 0 2 2 2 0 Pyridoxal phosphate biosynthetic protein PdxA Pyr_redox PF00070.27 gi|336476445|ref|YP_004615586.1| - 0.04 14.5 0.8 0.84 10.2 0.0 3.1 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Helicase_C PF00271.31 gi|336476445|ref|YP_004615586.1| - 0.073 13.4 0.4 35 4.8 0.0 3.3 1 1 2 3 3 3 0 Helicase conserved C-terminal domain GHMP_kinases_N PF00288.26 gi|336476446|ref|YP_004615587.1| - 8.6e-09 35.5 0.9 1.9e-08 34.4 0.9 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|336476446|ref|YP_004615587.1| - 0.0023 18.2 0.1 0.0023 18.2 0.1 2.5 2 1 1 3 3 3 1 GHMP kinases C terminal PPS_PS PF02006.16 gi|336476447|ref|YP_004615588.1| - 6.5e-74 247.3 1.0 8e-74 247.0 1.0 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Amidohydro_1 PF01979.20 gi|336476448|ref|YP_004615589.1| - 7.3e-76 255.7 0.4 9e-76 255.4 0.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|336476448|ref|YP_004615589.1| - 1.5e-21 77.4 0.3 3e-13 50.1 0.0 2.9 3 0 0 3 3 3 2 Amidohydrolase family A_deaminase PF00962.22 gi|336476448|ref|YP_004615589.1| - 0.0031 16.9 0.0 0.0052 16.2 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase AdoHcyase PF05221.17 gi|336476449|ref|YP_004615590.1| - 1.9e-54 184.9 0.0 8.9e-27 94.0 0.1 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|336476449|ref|YP_004615590.1| - 1.8e-51 174.5 1.2 2.5e-51 174.0 0.3 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|336476449|ref|YP_004615590.1| - 1.5e-08 34.3 0.1 2.7e-08 33.4 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|336476449|ref|YP_004615590.1| - 1.4e-05 24.7 0.0 2.7e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|336476449|ref|YP_004615590.1| - 0.0018 17.6 0.8 0.0052 16.1 0.8 1.7 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain RNA_pol_Rpb5_C PF01191.19 gi|336476450|ref|YP_004615591.1| - 1.7e-29 101.5 0.8 1.8e-29 101.4 0.8 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|336476451|ref|YP_004615592.1| - 1.2e-56 191.5 0.2 1.6e-56 191.1 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|336476451|ref|YP_004615592.1| - 1.3e-26 92.6 0.0 2.3e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|336476451|ref|YP_004615592.1| - 1.6e-26 93.1 0.0 3e-26 92.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 Abi_2 PF07751.11 gi|336476451|ref|YP_004615592.1| - 0.13 12.5 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 Abi-like protein RNA_pol_Rpb2_6 PF00562.28 gi|336476452|ref|YP_004615593.1| - 7.1e-125 417.1 0.1 8.8e-125 416.8 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|336476452|ref|YP_004615593.1| - 5e-30 103.7 0.1 1e-29 102.7 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|336476452|ref|YP_004615593.1| - 2.5e-20 72.5 0.8 6.5e-20 71.2 0.8 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|336476452|ref|YP_004615593.1| - 2.5e-08 34.3 3.2 9.5e-08 32.5 3.2 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 DUF1451 PF07295.11 gi|336476452|ref|YP_004615593.1| - 0.004 17.2 0.3 0.0071 16.4 0.3 1.3 1 0 0 1 1 1 1 Zinc-ribbon containing domain Nudix_N_2 PF14803.6 gi|336476452|ref|YP_004615593.1| - 0.016 15.1 0.3 3.6 7.6 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|336476452|ref|YP_004615593.1| - 0.025 14.2 0.3 0.33 10.6 0.0 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|336476452|ref|YP_004615593.1| - 0.22 11.1 3.3 0.84 9.2 3.3 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|336476452|ref|YP_004615593.1| - 0.22 11.7 1.3 0.43 10.8 1.3 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.6 gi|336476452|ref|YP_004615593.1| - 0.22 11.3 1.3 6 6.7 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336476452|ref|YP_004615593.1| - 0.24 10.8 0.8 15 5.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RecR PF02132.15 gi|336476452|ref|YP_004615593.1| - 0.4 10.3 3.9 0.95 9.1 0.6 2.3 1 1 1 2 2 2 0 RecR protein A2L_zn_ribbon PF08792.10 gi|336476452|ref|YP_004615593.1| - 0.46 10.3 3.3 2.2 8.1 3.3 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain RNA_pol_Rpb1_1 PF04997.12 gi|336476453|ref|YP_004615594.1| - 5.4e-104 347.9 0.0 8.8e-104 347.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|336476453|ref|YP_004615594.1| - 2.9e-69 232.5 0.1 4.6e-69 231.9 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|336476453|ref|YP_004615594.1| - 4.9e-31 106.9 0.0 1e-30 105.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|336476453|ref|YP_004615594.1| - 7.9e-29 100.6 0.0 1.5e-28 99.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|336476453|ref|YP_004615594.1| - 1.3e-28 100.2 0.1 2.2e-28 99.4 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_5 PF04998.17 gi|336476454|ref|YP_004615595.1| - 4.5e-56 190.2 1.6 6.4e-56 189.7 1.6 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Ribosomal_L7Ae PF01248.26 gi|336476455|ref|YP_004615596.1| - 1.3e-14 53.6 0.0 1.8e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BRCT_3 PF18428.1 gi|336476455|ref|YP_004615596.1| - 0.08 13.0 0.0 0.1 12.7 0.0 1.1 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain KH_2 PF07650.17 gi|336476456|ref|YP_004615597.1| - 2.7e-19 68.8 6.2 3.6e-14 52.3 0.6 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|336476456|ref|YP_004615597.1| - 2.4e-14 53.1 3.9 8.1e-13 48.3 1.0 2.2 2 0 0 2 2 2 2 NusA-like KH domain KH_4 PF13083.6 gi|336476456|ref|YP_004615597.1| - 3.2e-05 23.7 1.1 0.025 14.4 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|336476456|ref|YP_004615597.1| - 0.0026 17.6 3.6 0.08 12.8 0.2 3.1 2 1 1 3 3 3 1 KH domain Ribosom_S12_S23 PF00164.25 gi|336476457|ref|YP_004615598.1| - 2.5e-45 152.8 0.7 3.2e-45 152.4 0.2 1.4 2 0 0 2 2 2 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|336476458|ref|YP_004615599.1| - 2.2e-37 128.0 4.5 2.6e-37 127.7 4.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF2420 PF10336.9 gi|336476458|ref|YP_004615599.1| - 0.084 12.9 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) GTP_EFTU PF00009.27 gi|336476459|ref|YP_004615600.1| - 2.5e-64 216.4 0.5 3.9e-64 215.8 0.5 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|336476459|ref|YP_004615600.1| - 1.3e-30 105.6 0.1 3.8e-29 100.9 0.0 2.9 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|336476459|ref|YP_004615600.1| - 1.5e-23 82.7 0.5 1.5e-23 82.7 0.5 2.1 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|336476459|ref|YP_004615600.1| - 7.7e-23 80.3 0.1 2.5e-22 78.7 0.1 2.0 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|336476459|ref|YP_004615600.1| - 7.9e-16 58.2 0.7 2.5e-15 56.6 0.7 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|336476459|ref|YP_004615600.1| - 5.7e-05 23.2 0.1 0.00015 21.9 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|336476459|ref|YP_004615600.1| - 0.0048 16.7 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain Ras PF00071.22 gi|336476459|ref|YP_004615600.1| - 0.067 12.8 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 Ras family SRPRB PF09439.10 gi|336476459|ref|YP_004615600.1| - 0.1 12.1 0.1 0.37 10.2 0.1 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|336476459|ref|YP_004615600.1| - 0.16 11.9 0.4 0.51 10.2 0.2 1.9 2 0 0 2 2 2 0 RsgA GTPase GTP_EFTU PF00009.27 gi|336476460|ref|YP_004615601.1| - 4.1e-56 189.6 0.0 5.8e-56 189.1 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|336476460|ref|YP_004615601.1| - 1.1e-37 128.8 0.4 3.1e-37 127.3 0.1 1.9 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|336476460|ref|YP_004615601.1| - 4.7e-17 62.2 0.6 1.5e-16 60.5 0.6 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|336476460|ref|YP_004615601.1| - 2.2e-06 27.7 0.0 2.4e-05 24.4 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|336476460|ref|YP_004615601.1| - 0.0029 17.7 0.0 0.85 9.6 0.0 2.5 1 1 0 1 1 1 1 Dynamin family Roc PF08477.13 gi|336476460|ref|YP_004615601.1| - 0.012 15.8 0.1 1.8 8.8 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase GTP_EFTU_D4 PF14578.6 gi|336476460|ref|YP_004615601.1| - 0.014 15.3 0.2 0.033 14.1 0.2 1.6 1 0 0 1 1 1 0 Elongation factor Tu domain 4 FeoB_N PF02421.18 gi|336476460|ref|YP_004615601.1| - 0.017 14.6 0.1 0.45 10.0 0.1 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B Ras PF00071.22 gi|336476460|ref|YP_004615601.1| - 0.021 14.4 0.2 0.16 11.6 0.1 2.2 2 0 0 2 2 2 0 Ras family Gtr1_RagA PF04670.12 gi|336476460|ref|YP_004615601.1| - 0.031 13.6 0.0 0.067 12.5 0.0 1.5 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Septin PF00735.18 gi|336476460|ref|YP_004615601.1| - 0.14 11.4 0.0 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 Septin Ribosomal_S10 PF00338.22 gi|336476461|ref|YP_004615602.1| - 1.4e-26 92.5 0.0 1.6e-26 92.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|336476461|ref|YP_004615602.1| - 0.07 13.9 0.1 0.17 12.7 0.0 1.6 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain FAD_binding_3 PF01494.19 gi|336476462|ref|YP_004615603.1| - 6.8e-11 42.0 0.1 0.00077 18.8 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain Lycopene_cycl PF05834.12 gi|336476462|ref|YP_004615603.1| - 5.1e-09 35.7 0.0 6.6e-06 25.4 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|336476462|ref|YP_004615603.1| - 9.8e-07 28.3 0.7 2.8e-06 26.8 0.2 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|336476462|ref|YP_004615603.1| - 3.3e-06 26.7 0.0 4.8e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|336476462|ref|YP_004615603.1| - 0.00015 20.6 0.4 0.00015 20.6 0.4 1.6 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|336476462|ref|YP_004615603.1| - 0.0013 18.9 0.4 0.003 17.7 0.4 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|336476462|ref|YP_004615603.1| - 0.0027 16.6 0.2 0.87 8.4 0.7 2.3 2 1 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 gi|336476462|ref|YP_004615603.1| - 0.0047 16.2 0.7 0.0083 15.4 0.2 1.5 1 1 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|336476462|ref|YP_004615603.1| - 0.025 14.2 2.0 1 8.9 1.6 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|336476462|ref|YP_004615603.1| - 0.032 13.3 4.2 0.073 12.1 4.2 1.7 1 1 0 1 1 1 0 Glucose inhibited division protein A DUF4434 PF14488.6 gi|336476462|ref|YP_004615603.1| - 0.08 12.9 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) FAD_binding_2 PF00890.24 gi|336476462|ref|YP_004615603.1| - 0.27 10.3 3.5 0.24 10.4 2.1 1.5 2 0 0 2 2 2 0 FAD binding domain PBP_like_2 PF12849.7 gi|336476463|ref|YP_004615604.1| - 8.6e-43 147.0 0.1 1.7e-42 146.0 0.1 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|336476463|ref|YP_004615604.1| - 1.6e-19 69.8 0.1 2.3e-19 69.3 0.1 1.3 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|336476463|ref|YP_004615604.1| - 3.6e-09 36.7 0.0 6e-09 36.0 0.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336476463|ref|YP_004615604.1| - 0.088 12.7 0.0 0.95 9.4 0.0 2.2 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|336476464|ref|YP_004615605.1| - 1.4e-23 83.5 13.9 1.4e-23 83.5 13.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TssN PF17555.2 gi|336476464|ref|YP_004615605.1| - 0.43 9.9 9.2 0.3 10.4 0.8 2.9 3 0 0 3 3 3 0 Type VI secretion system, TssN DUF3333 PF11812.8 gi|336476464|ref|YP_004615605.1| - 6.5 6.9 9.0 0.21 11.8 0.6 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3333) ABC_tran PF00005.27 gi|336476465|ref|YP_004615606.1| - 8.9e-31 107.2 0.0 1.2e-30 106.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336476465|ref|YP_004615606.1| - 1.3e-10 41.6 0.0 0.00012 22.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336476465|ref|YP_004615606.1| - 2.4e-07 30.4 0.2 2.6e-06 27.0 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|336476465|ref|YP_004615606.1| - 2.4e-05 24.2 0.0 6.2e-05 22.9 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|336476465|ref|YP_004615606.1| - 0.00036 21.1 0.4 0.0022 18.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336476465|ref|YP_004615606.1| - 0.00036 20.9 0.0 0.00091 19.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|336476465|ref|YP_004615606.1| - 0.00053 19.9 0.0 0.0012 18.8 0.0 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|336476465|ref|YP_004615606.1| - 0.00058 19.5 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|336476465|ref|YP_004615606.1| - 0.0025 17.8 0.0 0.0043 17.0 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|336476465|ref|YP_004615606.1| - 0.0075 16.5 0.1 0.015 15.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|336476465|ref|YP_004615606.1| - 0.021 14.4 0.0 0.1 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|336476465|ref|YP_004615606.1| - 0.023 15.1 0.0 0.3 11.5 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|336476465|ref|YP_004615606.1| - 0.031 14.4 0.0 0.05 13.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|336476465|ref|YP_004615606.1| - 0.05 14.1 0.0 0.1 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|336476465|ref|YP_004615606.1| - 0.061 13.0 0.0 0.38 10.5 0.0 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase G-alpha PF00503.20 gi|336476465|ref|YP_004615606.1| - 0.065 12.4 0.0 0.11 11.6 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit DUF4172 PF13776.6 gi|336476465|ref|YP_004615606.1| - 0.082 13.2 0.3 30 5.0 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4172) NB-ARC PF00931.22 gi|336476465|ref|YP_004615606.1| - 0.084 12.0 0.0 0.11 11.6 0.0 1.2 1 1 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|336476465|ref|YP_004615606.1| - 0.11 12.4 0.9 2.3 8.1 0.9 2.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea PRK PF00485.18 gi|336476465|ref|YP_004615606.1| - 0.12 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.6 gi|336476465|ref|YP_004615606.1| - 0.13 12.5 0.1 2.4 8.4 0.0 2.5 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.22 gi|336476465|ref|YP_004615606.1| - 0.17 12.3 0.0 0.66 10.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase PhoU PF01895.19 gi|336476466|ref|YP_004615607.1| - 2.7e-43 146.3 12.5 2.8e-22 79.0 2.7 2.1 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.27 gi|336476467|ref|YP_004615608.1| - 1.9e-33 115.9 0.0 4.1e-33 114.8 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|336476467|ref|YP_004615608.1| - 9.2e-14 51.9 0.2 2.9e-06 27.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|336476467|ref|YP_004615608.1| - 7.5e-06 26.6 0.0 9.8e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|336476467|ref|YP_004615608.1| - 3.8e-05 24.0 0.2 0.00032 21.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336476467|ref|YP_004615608.1| - 0.0002 21.0 0.1 0.00039 20.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|336476467|ref|YP_004615608.1| - 0.00023 21.2 0.0 0.00035 20.6 0.0 1.6 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|336476467|ref|YP_004615608.1| - 0.00026 21.4 0.1 0.0014 19.1 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|336476467|ref|YP_004615608.1| - 0.00036 20.9 0.1 0.00056 20.3 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.6 gi|336476467|ref|YP_004615608.1| - 0.00078 18.2 0.0 0.001 17.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|336476467|ref|YP_004615608.1| - 0.0013 18.2 0.6 0.026 14.0 0.1 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|336476467|ref|YP_004615608.1| - 0.0014 18.3 0.0 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|336476467|ref|YP_004615608.1| - 0.002 17.8 0.1 0.0056 16.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|336476467|ref|YP_004615608.1| - 0.0034 17.3 0.1 0.0054 16.6 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase DP-EP PF08985.11 gi|336476467|ref|YP_004615608.1| - 0.004 17.3 0.0 1 9.5 0.0 2.3 2 0 0 2 2 2 1 DP-EP family AAA_28 PF13521.6 gi|336476467|ref|YP_004615608.1| - 0.0051 17.1 0.1 0.011 16.0 0.1 1.6 2 0 0 2 2 1 1 AAA domain DLIC PF05783.11 gi|336476467|ref|YP_004615608.1| - 0.0069 15.3 0.0 0.0092 14.9 0.0 1.1 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) AAA_14 PF13173.6 gi|336476467|ref|YP_004615608.1| - 0.007 16.4 0.0 0.11 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|336476467|ref|YP_004615608.1| - 0.01 15.8 0.0 0.045 13.7 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Mg_chelatase PF01078.21 gi|336476467|ref|YP_004615608.1| - 0.013 14.9 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|336476467|ref|YP_004615608.1| - 0.014 15.1 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|336476467|ref|YP_004615608.1| - 0.015 14.9 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.6 gi|336476467|ref|YP_004615608.1| - 0.025 14.3 0.0 0.043 13.5 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|336476467|ref|YP_004615608.1| - 0.03 14.2 0.1 0.056 13.4 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|336476467|ref|YP_004615608.1| - 0.032 14.4 0.1 0.091 12.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|336476467|ref|YP_004615608.1| - 0.054 13.1 0.3 0.11 12.1 0.3 1.5 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|336476467|ref|YP_004615608.1| - 0.055 14.0 0.4 0.2 12.2 0.1 2.0 1 1 1 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|336476467|ref|YP_004615608.1| - 0.073 13.0 0.4 0.14 12.1 0.4 1.5 1 0 0 1 1 1 0 NTPase RNA_helicase PF00910.22 gi|336476467|ref|YP_004615608.1| - 0.076 13.4 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|336476467|ref|YP_004615608.1| - 0.078 12.2 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin RNA12 PF10443.9 gi|336476467|ref|YP_004615608.1| - 0.08 11.7 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_19 PF13245.6 gi|336476467|ref|YP_004615608.1| - 0.08 13.3 0.7 0.2 12.0 0.7 1.8 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|336476467|ref|YP_004615608.1| - 0.1 11.8 0.1 0.22 10.7 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain T2SSE PF00437.20 gi|336476467|ref|YP_004615608.1| - 0.12 11.4 0.2 0.19 10.7 0.2 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|336476467|ref|YP_004615608.1| - 0.18 11.8 0.3 0.5 10.4 0.1 1.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|336476467|ref|YP_004615608.1| - 0.18 11.3 0.1 0.37 10.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain CcmB PF03379.13 gi|336476468|ref|YP_004615609.1| - 2.6e-33 115.4 11.6 3e-33 115.1 11.6 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.24 gi|336476468|ref|YP_004615609.1| - 5.6e-12 45.5 15.2 5.6e-12 45.5 15.2 1.8 1 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|336476468|ref|YP_004615609.1| - 2.1e-06 27.1 18.0 2.1e-06 27.1 18.0 2.2 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|336476468|ref|YP_004615609.1| - 6.9e-05 22.9 15.8 6.9e-05 22.9 15.8 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein Cytochrom_C_asm PF01578.20 gi|336476469|ref|YP_004615610.1| - 9.2e-29 100.7 17.7 9.2e-29 100.7 17.7 1.7 2 0 0 2 2 2 1 Cytochrome C assembly protein UL42 PF17638.2 gi|336476469|ref|YP_004615610.1| - 2.6 8.0 4.4 0.71 9.9 0.2 2.1 1 1 0 2 2 2 0 HCMV UL42 Topoisom_bac PF01131.20 gi|336476470|ref|YP_004615611.1| - 5.9e-111 371.4 0.0 7.7e-111 371.0 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|336476470|ref|YP_004615611.1| - 3.4e-15 56.1 0.1 8.5e-15 54.8 0.1 1.7 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|336476470|ref|YP_004615611.1| - 7.2e-14 51.3 20.8 1.5e-08 34.3 2.9 3.8 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim_4 PF13662.6 gi|336476470|ref|YP_004615611.1| - 0.0041 17.6 0.0 0.034 14.6 0.0 2.5 3 0 0 3 3 3 1 Toprim domain NitrOD2 PF18550.1 gi|336476470|ref|YP_004615611.1| - 0.031 14.4 0.1 0.075 13.2 0.1 1.6 1 0 0 1 1 1 0 Nitrososphaera output domain 2 Nitroreductase PF00881.24 gi|336476471|ref|YP_004615612.1| - 3.5e-34 118.3 0.3 9e-18 64.9 0.0 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|336476471|ref|YP_004615612.1| - 5.3e-19 68.6 0.7 2.5e-08 33.8 0.0 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase RE_R_Pab1 PF09522.10 gi|336476471|ref|YP_004615612.1| - 0.044 13.9 0.0 0.062 13.4 0.0 1.2 1 0 0 1 1 1 0 R.Pab1 restriction endonuclease IlvN PF07991.12 gi|336476472|ref|YP_004615613.1| - 1.8e-76 255.3 0.2 2.4e-76 254.9 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|336476472|ref|YP_004615613.1| - 1.6e-60 203.6 0.1 2.2e-60 203.1 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|336476472|ref|YP_004615613.1| - 9.8e-07 28.3 0.0 1.8e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|336476472|ref|YP_004615613.1| - 9e-06 25.9 0.0 1.5e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|336476472|ref|YP_004615613.1| - 2.6e-05 24.7 0.0 5.1e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|336476472|ref|YP_004615613.1| - 0.00012 22.2 0.0 0.00018 21.6 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|336476472|ref|YP_004615613.1| - 0.038 13.6 0.1 0.064 12.9 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|336476472|ref|YP_004615613.1| - 0.13 12.7 0.1 0.29 11.6 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding YfaZ PF07437.11 gi|336476472|ref|YP_004615613.1| - 0.14 11.8 0.0 0.31 10.7 0.0 1.5 1 0 0 1 1 1 0 YfaZ precursor Shikimate_DH PF01488.20 gi|336476472|ref|YP_004615613.1| - 0.15 12.2 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Mur_ligase PF01225.25 gi|336476472|ref|YP_004615613.1| - 0.15 12.4 0.1 0.47 10.8 0.1 1.8 1 1 0 1 1 1 0 Mur ligase family, catalytic domain ALS_ss_C PF10369.9 gi|336476473|ref|YP_004615614.1| - 1.4e-31 108.5 1.8 1.4e-31 108.5 1.8 2.0 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|336476473|ref|YP_004615614.1| - 1.4e-16 60.1 1.2 2.5e-16 59.3 0.4 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|336476473|ref|YP_004615614.1| - 2.3e-16 59.2 4.8 3.4e-16 58.7 0.3 2.7 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|336476473|ref|YP_004615614.1| - 1.5e-05 25.5 1.0 1.5e-05 25.5 1.0 1.8 2 0 0 2 2 2 1 ACT domain NIL PF09383.10 gi|336476473|ref|YP_004615614.1| - 0.013 15.3 0.2 6.8 6.6 0.0 2.6 2 1 1 3 3 3 0 NIL domain Ctf8 PF09696.10 gi|336476473|ref|YP_004615614.1| - 0.026 14.9 0.1 0.039 14.3 0.1 1.2 1 0 0 1 1 1 0 Ctf8 Saccharop_dh_N PF04455.12 gi|336476473|ref|YP_004615614.1| - 0.056 13.8 0.1 0.12 12.8 0.1 1.7 1 1 0 2 2 2 0 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_N PF02776.18 gi|336476474|ref|YP_004615615.1| - 5.3e-58 195.4 0.0 1e-56 191.3 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|336476474|ref|YP_004615615.1| - 3.1e-55 186.1 1.1 1.7e-54 183.7 0.0 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|336476474|ref|YP_004615615.1| - 6.4e-53 178.2 0.0 1.3e-52 177.1 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|336476474|ref|YP_004615615.1| - 0.001 18.8 0.0 0.002 17.9 0.0 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HMGL-like PF00682.19 gi|336476475|ref|YP_004615616.1| - 2.3e-77 260.1 0.2 6.3e-77 258.7 0.1 1.8 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|336476475|ref|YP_004615616.1| - 1.1e-36 125.7 2.8 1.8e-36 125.0 2.8 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Peptidase_M42 PF05343.14 gi|336476476|ref|YP_004615617.1| - 2.6e-112 374.6 2.9 3.1e-112 374.3 2.9 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|336476476|ref|YP_004615617.1| - 3.5e-13 49.7 0.3 5.4e-13 49.1 0.3 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 MerR_2 PF13591.6 gi|336476477|ref|YP_004615618.1| - 0.13 12.1 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 MerR HTH family regulatory protein Adenylsucc_synt PF00709.21 gi|336476478|ref|YP_004615619.1| - 7.4e-160 532.5 0.0 8.4e-160 532.3 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase LANC_like PF05147.13 gi|336476478|ref|YP_004615619.1| - 0.074 11.6 0.1 0.1 11.1 0.1 1.1 1 0 0 1 1 1 0 Lanthionine synthetase C-like protein Ribosomal_S19e PF01090.19 gi|336476479|ref|YP_004615620.1| - 1.8e-57 192.8 0.1 2.1e-57 192.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|336476479|ref|YP_004615620.1| - 0.14 12.1 0.0 5 7.1 0.0 2.2 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain dsDNA_bind PF01984.20 gi|336476480|ref|YP_004615621.1| - 2.1e-31 108.4 21.0 2.6e-31 108.2 21.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Phage_Gp19 PF09355.10 gi|336476480|ref|YP_004615621.1| - 0.021 15.2 1.0 0.025 15.0 1.0 1.1 1 0 0 1 1 1 0 Phage protein Gp19/Gp15/Gp42 SMC_N PF02463.19 gi|336476480|ref|YP_004615621.1| - 0.2 11.1 3.2 0.23 10.9 3.2 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Peptidase_M29 PF02073.15 gi|336476480|ref|YP_004615621.1| - 0.33 9.7 4.3 0.36 9.6 4.3 1.2 1 0 0 1 1 1 0 Thermophilic metalloprotease (M29) Caps_synth_GfcC PF06251.11 gi|336476480|ref|YP_004615621.1| - 0.4 10.3 7.7 0.48 10.0 7.7 1.1 1 0 0 1 1 1 0 Capsule biosynthesis GfcC DUF4355 PF14265.6 gi|336476480|ref|YP_004615621.1| - 0.58 10.4 18.7 1.9 8.8 18.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4355) Borrelia_P83 PF05262.11 gi|336476480|ref|YP_004615621.1| - 7.7 4.9 13.9 8.2 4.8 13.9 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Asn_synthase PF00733.21 gi|336476481|ref|YP_004615622.1| - 0.00099 18.9 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase DUF3969 PF13108.6 gi|336476481|ref|YP_004615622.1| - 0.0013 18.7 0.1 0.004 17.2 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3969) Diphthami_syn_2 PF01902.17 gi|336476481|ref|YP_004615622.1| - 0.0062 16.1 0.0 0.024 14.1 0.0 1.9 2 0 0 2 2 2 1 Diphthamide synthase QueC PF06508.13 gi|336476481|ref|YP_004615622.1| - 0.01 15.3 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|336476481|ref|YP_004615622.1| - 0.038 12.8 0.0 0.067 12.0 0.0 1.5 1 1 0 1 1 1 0 tRNA methyl transferase PAPS_reduct PF01507.19 gi|336476481|ref|YP_004615622.1| - 0.1 12.6 0.0 0.25 11.4 0.0 1.7 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Ribosomal_L39 PF00832.20 gi|336476482|ref|YP_004615623.1| - 5.4e-20 70.8 8.7 6.5e-20 70.5 8.7 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|336476483|ref|YP_004615624.1| - 9e-13 48.3 0.1 1.1e-12 48.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e MyTH4 PF00784.17 gi|336476483|ref|YP_004615624.1| - 0.11 13.0 0.1 0.13 12.8 0.1 1.2 1 0 0 1 1 1 0 MyTH4 domain Rep_1 PF01446.17 gi|336476483|ref|YP_004615624.1| - 0.11 11.9 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Replication protein eIF-6 PF01912.18 gi|336476484|ref|YP_004615625.1| - 4.8e-68 228.4 1.1 5.6e-68 228.2 1.1 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|336476485|ref|YP_004615626.1| - 2.5e-11 43.7 0.2 2.7e-11 43.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Acyl_transf_2 PF02273.15 gi|336476485|ref|YP_004615626.1| - 0.0091 15.3 0.0 0.0092 15.2 0.0 1.1 1 0 0 1 1 1 1 Acyl transferase Prefoldin PF02996.17 gi|336476486|ref|YP_004615627.1| - 9.3e-30 103.0 3.1 1.2e-29 102.6 3.1 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|336476486|ref|YP_004615627.1| - 2.4e-09 37.1 9.8 8.4e-05 22.5 5.7 2.3 2 0 0 2 2 2 2 Prefoldin subunit MscS_porin PF12795.7 gi|336476486|ref|YP_004615627.1| - 7.5e-05 22.4 8.2 0.075 12.6 5.0 2.1 2 0 0 2 2 2 2 Mechanosensitive ion channel porin domain LOH1CR12 PF10158.9 gi|336476486|ref|YP_004615627.1| - 0.00011 22.2 6.8 0.0085 16.1 0.5 2.4 2 1 0 2 2 2 2 Tumour suppressor protein DUF1664 PF07889.12 gi|336476486|ref|YP_004615627.1| - 0.00042 20.4 6.6 0.0038 17.3 1.3 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|336476486|ref|YP_004615627.1| - 0.0011 19.2 3.6 0.22 11.8 0.4 2.2 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|336476486|ref|YP_004615627.1| - 0.0052 17.2 3.6 1.1 9.8 0.7 2.3 2 0 0 2 2 2 1 Nucleopolyhedrovirus P10 protein PspA_IM30 PF04012.12 gi|336476486|ref|YP_004615627.1| - 0.0073 15.9 6.1 0.0073 15.9 6.1 2.1 2 0 0 2 2 2 1 PspA/IM30 family Uds1 PF15456.6 gi|336476486|ref|YP_004615627.1| - 0.0074 16.4 3.2 0.011 15.9 3.2 1.3 1 1 0 1 1 1 1 Up-regulated During Septation BORCS8 PF10167.9 gi|336476486|ref|YP_004615627.1| - 0.0077 16.2 3.8 0.1 12.6 0.1 2.2 2 0 0 2 2 2 1 BLOC-1-related complex sub-unit 8 FAM184 PF15665.5 gi|336476486|ref|YP_004615627.1| - 0.0087 15.9 9.1 0.32 10.7 0.1 2.1 2 0 0 2 2 2 1 Family with sequence similarity 184, A and B CLZ PF16526.5 gi|336476486|ref|YP_004615627.1| - 0.0094 16.3 5.6 0.0094 16.3 5.6 2.2 2 0 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Seryl_tRNA_N PF02403.22 gi|336476486|ref|YP_004615627.1| - 0.012 15.9 6.6 0.69 10.2 2.1 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain RPW8 PF05659.11 gi|336476486|ref|YP_004615627.1| - 0.015 15.0 1.4 0.047 13.4 0.2 2.0 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 KLRAQ PF10205.9 gi|336476486|ref|YP_004615627.1| - 0.015 15.5 2.8 0.015 15.5 2.8 2.1 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein SesA PF17107.5 gi|336476486|ref|YP_004615627.1| - 0.015 15.4 2.3 0.14 12.3 1.5 2.2 2 1 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases EMP24_GP25L PF01105.24 gi|336476486|ref|YP_004615627.1| - 0.017 15.1 7.0 0.045 13.7 0.7 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD BAR PF03114.18 gi|336476486|ref|YP_004615627.1| - 0.018 14.7 5.1 0.033 13.8 2.1 2.0 2 0 0 2 2 2 0 BAR domain APG6_N PF17675.1 gi|336476486|ref|YP_004615627.1| - 0.018 15.5 15.0 0.19 12.3 15.0 2.1 1 1 0 1 1 1 0 Apg6 coiled-coil region GAS PF13851.6 gi|336476486|ref|YP_004615627.1| - 0.021 14.2 12.4 0.4 10.0 5.4 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Phage_GP20 PF06810.11 gi|336476486|ref|YP_004615627.1| - 0.029 14.2 7.9 0.09 12.6 2.4 2.2 2 0 0 2 2 2 0 Phage minor structural protein GP20 HSL_N PF06350.12 gi|336476486|ref|YP_004615627.1| - 0.035 13.1 0.7 0.56 9.1 0.0 2.0 2 0 0 2 2 2 0 Hormone-sensitive lipase (HSL) N-terminus Spectrin PF00435.21 gi|336476486|ref|YP_004615627.1| - 0.041 14.4 12.4 1.5 9.4 0.4 2.2 2 0 0 2 2 2 0 Spectrin repeat Rad9 PF04139.13 gi|336476486|ref|YP_004615627.1| - 0.041 13.3 2.8 2 7.8 0.0 2.0 1 1 1 2 2 2 0 Rad9 Mod_r PF07200.13 gi|336476486|ref|YP_004615627.1| - 0.048 13.8 15.7 1.2 9.2 15.7 2.1 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DUF2205 PF10224.9 gi|336476486|ref|YP_004615627.1| - 0.051 13.6 10.3 0.1 12.6 3.6 2.4 2 0 0 2 2 2 0 Short coiled-coil protein Fib_alpha PF08702.10 gi|336476486|ref|YP_004615627.1| - 0.064 13.4 9.5 5.9 7.1 9.9 2.1 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF2459 PF09601.10 gi|336476486|ref|YP_004615627.1| - 0.071 12.9 0.7 0.11 12.3 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2459) KxDL PF10241.9 gi|336476486|ref|YP_004615627.1| - 0.071 13.4 5.7 0.16 12.3 1.2 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein YkyA PF10368.9 gi|336476486|ref|YP_004615627.1| - 0.08 12.6 10.2 0.049 13.3 5.5 2.1 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein DUF1043 PF06295.12 gi|336476486|ref|YP_004615627.1| - 0.088 12.8 10.1 0.043 13.8 4.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) DUF4618 PF15397.6 gi|336476486|ref|YP_004615627.1| - 0.094 12.1 11.5 0.098 12.1 4.6 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4618) FlaC_arch PF05377.11 gi|336476486|ref|YP_004615627.1| - 0.099 13.0 6.2 1.2 9.6 3.0 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4756 PF15948.5 gi|336476486|ref|YP_004615627.1| - 0.13 12.1 6.1 0.34 10.7 3.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4756) AAA_32 PF13654.6 gi|336476486|ref|YP_004615627.1| - 0.13 11.0 7.0 0.07 11.9 1.2 2.0 2 0 0 2 2 2 0 AAA domain Baculo_PEP_C PF04513.12 gi|336476486|ref|YP_004615627.1| - 0.16 12.0 3.8 5.8 7.0 3.8 2.2 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.6 gi|336476486|ref|YP_004615627.1| - 0.16 10.6 7.0 0.25 10.0 7.0 1.3 1 1 0 1 1 1 0 AAA domain Cnn_1N PF07989.11 gi|336476486|ref|YP_004615627.1| - 0.21 11.7 7.1 4.1 7.6 0.2 2.5 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 YabA PF06156.13 gi|336476486|ref|YP_004615627.1| - 0.23 12.1 7.4 2.5 8.8 3.0 2.2 2 0 0 2 2 2 0 Initiation control protein YabA Spc7 PF08317.11 gi|336476486|ref|YP_004615627.1| - 0.25 10.2 13.6 0.13 11.1 6.4 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein Syntaxin-6_N PF09177.11 gi|336476486|ref|YP_004615627.1| - 0.27 11.8 5.8 1.9 9.1 2.2 2.3 1 1 0 2 2 2 0 Syntaxin 6, N-terminal WXG100 PF06013.12 gi|336476486|ref|YP_004615627.1| - 0.28 11.4 7.5 1.5 9.1 1.3 2.5 2 1 0 2 2 2 0 Proteins of 100 residues with WXG TMPIT PF07851.13 gi|336476486|ref|YP_004615627.1| - 0.29 10.3 7.2 3.8 6.7 3.4 2.0 2 0 0 2 2 2 0 TMPIT-like protein Golgin_A5 PF09787.9 gi|336476486|ref|YP_004615627.1| - 0.3 10.5 9.9 0.072 12.6 2.7 2.0 2 0 0 2 2 2 0 Golgin subfamily A member 5 Tropomyosin_1 PF12718.7 gi|336476486|ref|YP_004615627.1| - 0.3 11.2 12.7 0.11 12.6 5.9 2.3 2 0 0 2 2 2 0 Tropomyosin like GCN5L1 PF06320.13 gi|336476486|ref|YP_004615627.1| - 0.3 11.2 5.5 0.25 11.5 1.3 2.2 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) Sec34 PF04136.15 gi|336476486|ref|YP_004615627.1| - 0.31 10.9 10.7 1.8 8.5 0.9 2.2 1 1 1 2 2 2 0 Sec34-like family YlqD PF11068.8 gi|336476486|ref|YP_004615627.1| - 0.33 11.3 10.4 0.46 10.9 4.1 2.1 2 0 0 2 2 2 0 YlqD protein DUF842 PF05811.13 gi|336476486|ref|YP_004615627.1| - 0.33 10.6 5.1 0.45 10.2 0.9 2.1 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF842) FapA PF03961.13 gi|336476486|ref|YP_004615627.1| - 0.47 9.0 8.8 1.8 7.1 4.5 2.0 1 1 0 2 2 2 0 Flagellar Assembly Protein A OmpH PF03938.14 gi|336476486|ref|YP_004615627.1| - 0.49 10.7 10.6 0.21 11.9 5.1 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Bacillus_HBL PF05791.11 gi|336476486|ref|YP_004615627.1| - 0.5 10.2 8.5 1.1 9.1 2.9 2.1 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Snf7 PF03357.21 gi|336476486|ref|YP_004615627.1| - 0.52 9.9 14.2 0.57 9.7 1.3 2.4 2 1 0 2 2 2 0 Snf7 Lebercilin PF15619.6 gi|336476486|ref|YP_004615627.1| - 0.65 9.6 13.4 0.97 9.1 5.8 2.1 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease CENP-F_leu_zip PF10473.9 gi|336476486|ref|YP_004615627.1| - 0.67 10.0 13.5 2.5 8.1 5.9 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DHR10 PF18595.1 gi|336476486|ref|YP_004615627.1| - 0.68 10.0 15.8 0.6 10.2 8.6 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain COG2 PF06148.11 gi|336476486|ref|YP_004615627.1| - 0.7 10.0 5.3 0.7 10.0 1.5 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 FliJ PF02050.16 gi|336476486|ref|YP_004615627.1| - 0.76 10.0 14.3 0.17 12.1 5.6 2.4 3 0 0 3 3 2 0 Flagellar FliJ protein GrpE PF01025.19 gi|336476486|ref|YP_004615627.1| - 0.76 9.4 8.2 0.54 9.9 4.8 2.0 2 0 0 2 2 2 0 GrpE Laminin_II PF06009.12 gi|336476486|ref|YP_004615627.1| - 0.79 9.7 6.2 0.82 9.7 1.0 2.1 2 0 0 2 2 2 0 Laminin Domain II HAUS6_N PF14661.6 gi|336476486|ref|YP_004615627.1| - 0.83 9.2 5.3 0.66 9.5 0.7 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus Allexi_40kDa PF05549.11 gi|336476486|ref|YP_004615627.1| - 0.88 9.0 5.3 2 7.8 1.3 2.0 1 1 0 2 2 2 0 Allexivirus 40kDa protein Nup54 PF13874.6 gi|336476486|ref|YP_004615627.1| - 0.96 9.6 7.7 2.7 8.1 2.5 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 LMBR1 PF04791.16 gi|336476486|ref|YP_004615627.1| - 0.99 8.2 4.1 1.2 8.0 4.1 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF3287 PF11690.8 gi|336476486|ref|YP_004615627.1| - 0.99 9.1 3.7 0.9 9.3 0.3 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF3287) DUF4200 PF13863.6 gi|336476486|ref|YP_004615627.1| - 1 9.8 13.3 1.7 9.1 7.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF3552 PF12072.8 gi|336476486|ref|YP_004615627.1| - 1.2 8.6 12.4 4.4 6.7 7.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) DUF4446 PF14584.6 gi|336476486|ref|YP_004615627.1| - 1.2 9.1 6.1 1.2 9.1 1.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) DUF4795 PF16043.5 gi|336476486|ref|YP_004615627.1| - 1.3 8.5 11.5 9.5 5.8 11.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Med4 PF10018.9 gi|336476486|ref|YP_004615627.1| - 1.3 8.6 9.7 11 5.6 0.1 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Swi5 PF07061.11 gi|336476486|ref|YP_004615627.1| - 1.5 9.0 13.3 0.36 10.9 0.6 2.8 2 1 0 2 2 2 0 Swi5 IFT57 PF10498.9 gi|336476486|ref|YP_004615627.1| - 2.3 7.1 12.8 2.2 7.2 5.7 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 AAA_lid_9 PF17871.1 gi|336476486|ref|YP_004615627.1| - 2.5 8.1 9.4 1.1 9.2 4.2 2.1 2 0 0 2 2 2 0 AAA lid domain YvrJ PF12841.7 gi|336476486|ref|YP_004615627.1| - 2.6 7.6 7.1 1.4 8.5 0.4 3.3 4 0 0 4 4 4 0 YvrJ protein family FlxA PF14282.6 gi|336476486|ref|YP_004615627.1| - 3.3 7.8 18.6 5.5 7.0 10.9 2.3 2 0 0 2 2 2 0 FlxA-like protein Tup_N PF08581.10 gi|336476486|ref|YP_004615627.1| - 3.4 8.0 15.3 1.2 9.5 7.7 2.3 2 0 0 2 2 2 0 Tup N-terminal Osmo_CC PF08946.10 gi|336476486|ref|YP_004615627.1| - 3.5 7.9 10.3 18 5.7 0.1 3.3 2 1 1 3 3 3 0 Osmosensory transporter coiled coil TPR_MLP1_2 PF07926.12 gi|336476486|ref|YP_004615627.1| - 3.7 7.6 16.3 2.7 8.1 8.9 2.4 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF4140 PF13600.6 gi|336476486|ref|YP_004615627.1| - 4.4 7.8 7.5 9.8 6.7 2.4 2.4 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) ZapB PF06005.12 gi|336476486|ref|YP_004615627.1| - 5.6 7.5 16.9 15 6.1 9.4 2.7 2 1 1 3 3 2 0 Cell division protein ZapB HR1 PF02185.16 gi|336476486|ref|YP_004615627.1| - 6.4 7.0 14.5 2.7 8.2 7.5 2.4 2 0 0 2 2 2 0 Hr1 repeat Spc24 PF08286.11 gi|336476486|ref|YP_004615627.1| - 8.9 6.6 13.6 19 5.5 5.8 2.6 2 2 0 2 2 2 0 Spc24 subunit of Ndc80 SRP54 PF00448.22 gi|336476487|ref|YP_004615628.1| - 4.8e-75 251.5 0.1 6.5e-75 251.1 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|336476487|ref|YP_004615628.1| - 1.5e-11 44.3 7.1 2.1e-11 43.9 1.9 2.6 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain AAA_17 PF13207.6 gi|336476487|ref|YP_004615628.1| - 1.6e-05 25.4 1.9 3.3e-05 24.3 0.1 2.2 3 0 0 3 3 2 1 AAA domain AAA_30 PF13604.6 gi|336476487|ref|YP_004615628.1| - 0.00011 22.0 0.2 0.00024 20.9 0.2 1.4 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|336476487|ref|YP_004615628.1| - 0.00034 20.0 0.1 0.00063 19.1 0.1 1.5 1 1 0 1 1 1 1 Zeta toxin ResIII PF04851.15 gi|336476487|ref|YP_004615628.1| - 0.00041 20.4 0.1 0.00098 19.2 0.1 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Thymidylate_kin PF02223.17 gi|336476487|ref|YP_004615628.1| - 0.00047 19.9 0.1 0.021 14.5 0.1 2.5 2 0 0 2 2 2 1 Thymidylate kinase AAA PF00004.29 gi|336476487|ref|YP_004615628.1| - 0.00052 20.5 1.0 0.0024 18.3 0.3 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|336476487|ref|YP_004615628.1| - 0.00082 19.8 0.0 0.002 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336476487|ref|YP_004615628.1| - 0.00085 19.6 0.0 0.003 17.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|336476487|ref|YP_004615628.1| - 0.0012 19.1 0.0 0.0039 17.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 gi|336476487|ref|YP_004615628.1| - 0.0021 18.0 1.4 0.029 14.3 0.1 2.8 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.9 gi|336476487|ref|YP_004615628.1| - 0.0022 17.3 0.3 0.0039 16.5 0.1 1.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 gi|336476487|ref|YP_004615628.1| - 0.0033 17.3 0.0 0.006 16.5 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase CbiA PF01656.23 gi|336476487|ref|YP_004615628.1| - 0.0043 17.1 1.5 0.015 15.4 0.4 2.5 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.6 gi|336476487|ref|YP_004615628.1| - 0.0046 17.1 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|336476487|ref|YP_004615628.1| - 0.0058 15.7 0.1 0.033 13.2 0.0 2.0 1 1 1 2 2 2 1 Type II/IV secretion system protein 6PF2K PF01591.18 gi|336476487|ref|YP_004615628.1| - 0.0067 15.7 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_7 PF12775.7 gi|336476487|ref|YP_004615628.1| - 0.0083 15.7 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region cobW PF02492.19 gi|336476487|ref|YP_004615628.1| - 0.0093 15.6 0.2 0.0093 15.6 0.2 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain LpxK PF02606.14 gi|336476487|ref|YP_004615628.1| - 0.011 14.8 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase MMR_HSR1 PF01926.23 gi|336476487|ref|YP_004615628.1| - 0.017 15.2 0.4 0.07 13.2 0.4 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|336476487|ref|YP_004615628.1| - 0.02 14.8 1.0 0.16 11.9 0.2 2.3 2 0 0 2 2 2 0 NTPase CLP1_P PF16575.5 gi|336476487|ref|YP_004615628.1| - 0.02 14.7 0.1 3.6 7.3 0.0 2.3 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_19 PF13245.6 gi|336476487|ref|YP_004615628.1| - 0.023 15.0 0.2 0.051 13.9 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|336476487|ref|YP_004615628.1| - 0.036 13.8 0.1 0.06 13.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|336476487|ref|YP_004615628.1| - 0.1 13.1 0.1 0.34 11.4 0.0 1.9 2 0 0 2 2 2 0 ABC transporter Arf PF00025.21 gi|336476487|ref|YP_004615628.1| - 0.1 12.0 0.0 0.34 10.3 0.0 1.9 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_5 PF07728.14 gi|336476487|ref|YP_004615628.1| - 0.12 12.4 0.1 0.59 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) LytR_C PF13399.6 gi|336476487|ref|YP_004615628.1| - 0.12 13.4 0.1 0.32 12.0 0.1 1.8 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator AAA_11 PF13086.6 gi|336476487|ref|YP_004615628.1| - 0.47 10.2 2.3 1.4 8.6 0.1 2.2 1 1 0 2 2 2 0 AAA domain Trp_syntA PF00290.20 gi|336476488|ref|YP_004615629.1| - 1.3e-90 302.8 0.0 1.6e-90 302.5 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|336476488|ref|YP_004615629.1| - 4e-05 23.2 0.2 6.3e-05 22.5 0.2 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|336476488|ref|YP_004615629.1| - 8.9e-05 22.0 0.0 0.00012 21.5 0.0 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase PcrB PF01884.17 gi|336476488|ref|YP_004615629.1| - 0.0072 15.8 0.3 0.75 9.2 0.3 2.3 2 0 0 2 2 2 1 PcrB family BtpA PF03437.15 gi|336476488|ref|YP_004615629.1| - 0.062 12.7 0.5 0.3 10.5 0.5 1.8 1 1 1 2 2 2 0 BtpA family ThiG PF05690.14 gi|336476488|ref|YP_004615629.1| - 0.084 12.2 0.2 0.13 11.6 0.2 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|336476488|ref|YP_004615629.1| - 0.11 11.4 0.3 0.17 10.8 0.3 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|336476488|ref|YP_004615629.1| - 0.12 11.3 0.6 1.1 8.2 0.6 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain PALP PF00291.25 gi|336476489|ref|YP_004615630.1| - 2.5e-38 132.2 0.6 3.2e-38 131.8 0.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PspC PF04024.12 gi|336476490|ref|YP_004615631.1| - 5.3e-26 90.2 1.3 5.9e-26 90.0 1.3 1.0 1 0 0 1 1 1 1 PspC domain HRG PF16954.5 gi|336476490|ref|YP_004615631.1| - 0.02 15.3 0.9 0.032 14.6 0.9 1.4 1 0 0 1 1 1 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene IGPS PF00218.21 gi|336476491|ref|YP_004615632.1| - 7.8e-65 218.5 0.2 9.1e-65 218.3 0.2 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 gi|336476491|ref|YP_004615632.1| - 3e-05 23.9 0.2 5.9e-05 22.9 0.2 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.14 gi|336476491|ref|YP_004615632.1| - 0.00073 18.8 0.5 0.099 11.8 0.1 2.9 2 1 1 3 3 3 2 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|336476491|ref|YP_004615632.1| - 0.017 14.6 0.1 0.032 13.7 0.1 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein ThiG PF05690.14 gi|336476491|ref|YP_004615632.1| - 0.055 12.8 0.0 0.097 12.0 0.0 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG Arch_flagellin PF01917.16 gi|336476493|ref|YP_004615634.1| - 2.5e-30 105.8 0.1 3e-19 69.8 1.3 2.3 2 1 0 2 2 2 2 Archaebacterial flagellin DUF11 PF01345.18 gi|336476494|ref|YP_004615635.1| - 1.8e-05 25.0 0.0 5.7e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF11 BatD PF13584.6 gi|336476494|ref|YP_004615635.1| - 3e-05 23.0 0.0 0.16 10.7 0.0 2.3 2 0 0 2 2 2 2 Oxygen tolerance bMG10 PF17973.1 gi|336476494|ref|YP_004615635.1| - 3.5e-05 24.0 0.0 0.57 10.4 0.0 3.7 2 1 1 3 3 3 1 Bacterial Alpha-2-macroglobulin MG10 domain Top6b_C PF18000.1 gi|336476494|ref|YP_004615635.1| - 0.0054 16.9 0.4 2.1 8.5 0.0 2.9 3 0 0 3 3 3 2 Type 2 DNA topoisomerase 6 subunit B C-terminal domain TRAP_beta PF05753.14 gi|336476494|ref|YP_004615635.1| - 0.0068 15.8 0.0 0.034 13.5 0.0 2.0 2 0 0 2 2 2 1 Translocon-associated protein beta (TRAPB) DUF4139 PF13598.6 gi|336476494|ref|YP_004615635.1| - 0.03 14.0 0.0 1.6 8.4 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4139) CARDB PF07705.11 gi|336476494|ref|YP_004615635.1| - 0.039 14.2 0.2 0.31 11.3 0.0 2.5 3 0 0 3 3 3 0 CARDB T2SSB PF16537.5 gi|336476494|ref|YP_004615635.1| - 0.12 12.0 0.0 0.28 10.8 0.0 1.6 1 0 0 1 1 1 0 Type II secretion system protein B Arch_fla_DE PF04659.13 gi|336476495|ref|YP_004615636.1| - 9.5e-28 95.9 1.9 1.8e-27 95.0 0.2 2.4 2 0 0 2 2 2 1 Archaeal flagella protein T2SSF PF00482.23 gi|336476495|ref|YP_004615636.1| - 0.025 14.5 1.6 1.7 8.7 0.2 3.3 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F Baculo_PEP_C PF04513.12 gi|336476495|ref|YP_004615636.1| - 0.033 14.2 17.6 12 6.0 0.3 3.8 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus AHJR-like PF18743.1 gi|336476495|ref|YP_004615636.1| - 0.038 13.6 0.8 0.12 11.9 0.7 1.9 1 1 0 1 1 1 0 REase_AHJR-like SLATT_fungal PF18142.1 gi|336476495|ref|YP_004615636.1| - 0.049 13.6 0.6 0.26 11.3 0.2 2.5 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain DUF3375 PF11855.8 gi|336476495|ref|YP_004615636.1| - 0.1 11.5 6.9 0.071 12.0 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3375) SpecificRecomb PF10136.9 gi|336476495|ref|YP_004615636.1| - 0.29 9.4 1.9 0.44 8.8 1.9 1.2 1 0 0 1 1 1 0 Site-specific recombinase DUF1664 PF07889.12 gi|336476495|ref|YP_004615636.1| - 0.44 10.6 11.0 7.1 6.7 1.4 4.1 1 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF3209 PF11483.8 gi|336476495|ref|YP_004615636.1| - 0.5 10.8 2.7 1.5 9.3 0.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3209) Prefoldin PF02996.17 gi|336476495|ref|YP_004615636.1| - 0.54 10.2 8.1 4.3 7.3 0.1 3.9 2 1 1 3 3 3 0 Prefoldin subunit CENP-F_leu_zip PF10473.9 gi|336476495|ref|YP_004615636.1| - 1.2 9.2 27.8 0.32 11.0 9.8 4.1 2 1 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Filament PF00038.21 gi|336476495|ref|YP_004615636.1| - 1.6 8.2 25.3 0.012 15.2 7.2 3.5 2 1 1 3 3 3 0 Intermediate filament protein DHR10 PF18595.1 gi|336476495|ref|YP_004615636.1| - 1.7 8.8 13.8 0.78 9.8 4.8 3.3 2 1 1 3 3 2 0 Designed helical repeat protein 10 domain MIP-T3_C PF17749.1 gi|336476495|ref|YP_004615636.1| - 2 8.3 17.1 31 4.5 5.4 4.5 2 1 1 3 3 3 0 Microtubule-binding protein MIP-T3 C-terminal region DUF3450 PF11932.8 gi|336476495|ref|YP_004615636.1| - 2.1 7.6 13.6 0.62 9.3 1.6 3.8 2 1 2 4 4 4 0 Protein of unknown function (DUF3450) Cep57_CLD PF14073.6 gi|336476495|ref|YP_004615636.1| - 3.8 7.5 15.0 1.7 8.7 9.2 3.2 2 1 0 2 2 2 0 Centrosome localisation domain of Cep57 Spc7 PF08317.11 gi|336476495|ref|YP_004615636.1| - 4.5 6.1 26.4 0.16 10.8 10.0 3.1 2 1 1 3 3 3 0 Spc7 kinetochore protein BatD PF13584.6 gi|336476496|ref|YP_004615637.1| - 2.1e-08 33.5 0.1 2.1e-05 23.5 0.0 2.4 2 0 0 2 2 2 2 Oxygen tolerance TRAP_beta PF05753.14 gi|336476496|ref|YP_004615637.1| - 3e-08 33.2 0.8 6.2e-06 25.7 0.1 2.8 2 1 1 3 3 3 2 Translocon-associated protein beta (TRAPB) DUF11 PF01345.18 gi|336476496|ref|YP_004615637.1| - 2.5e-07 30.9 0.0 0.0057 16.9 0.0 3.7 3 1 0 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.11 gi|336476496|ref|YP_004615637.1| - 1.8e-05 25.0 0.1 1.8 8.9 0.0 3.7 3 0 0 3 3 3 2 CARDB Top6b_C PF18000.1 gi|336476496|ref|YP_004615637.1| - 0.00021 21.4 4.5 0.042 14.0 0.3 3.8 2 2 0 2 2 2 2 Type 2 DNA topoisomerase 6 subunit B C-terminal domain Transglut_C PF00927.22 gi|336476496|ref|YP_004615637.1| - 0.08 13.1 0.1 1.3 9.2 0.0 2.8 3 0 0 3 3 3 0 Transglutaminase family, C-terminal ig like domain DUF4834 PF16118.5 gi|336476497|ref|YP_004615638.1| - 0.063 14.2 0.1 0.063 14.2 0.1 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4834) Arch_fla_DE PF04659.13 gi|336476498|ref|YP_004615639.1| - 1.3e-27 95.5 2.1 1.7e-27 95.1 0.1 2.2 3 0 0 3 3 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|336476498|ref|YP_004615639.1| - 8.6e-23 80.5 24.6 3.6e-20 72.1 6.4 4.9 4 1 1 5 5 5 2 Flagella accessory protein C (FlaC) NPV_P10 PF05531.12 gi|336476498|ref|YP_004615639.1| - 0.00021 21.7 2.8 0.00021 21.7 2.8 3.1 3 0 0 3 3 2 1 Nucleopolyhedrovirus P10 protein Vps5 PF09325.10 gi|336476498|ref|YP_004615639.1| - 0.0009 18.9 6.9 0.17 11.4 0.4 2.3 2 0 0 2 2 2 2 Vps5 C terminal like EzrA PF06160.12 gi|336476498|ref|YP_004615639.1| - 0.00092 17.5 20.2 0.022 12.9 8.4 2.3 1 1 0 2 2 2 2 Septation ring formation regulator, EzrA TRAF_BIRC3_bd PF16673.5 gi|336476498|ref|YP_004615639.1| - 0.0015 18.3 7.4 0.63 9.9 1.3 3.9 3 1 1 4 4 4 1 TNF receptor-associated factor BIRC3 binding domain CENP-F_leu_zip PF10473.9 gi|336476498|ref|YP_004615639.1| - 0.0023 17.9 23.8 0.032 14.2 10.6 2.5 1 1 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ABC_tran_CTD PF16326.5 gi|336476498|ref|YP_004615639.1| - 0.0032 17.7 10.1 0.018 15.3 1.0 3.5 3 0 0 3 3 3 1 ABC transporter C-terminal domain DUF1664 PF07889.12 gi|336476498|ref|YP_004615639.1| - 0.0035 17.4 12.8 0.028 14.5 2.3 3.2 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|336476498|ref|YP_004615639.1| - 0.004 17.0 14.8 0.04 13.8 2.7 3.2 1 1 2 3 3 3 3 Sec34-like family GAS PF13851.6 gi|336476498|ref|YP_004615639.1| - 0.0047 16.3 17.6 0.052 12.9 5.1 2.4 1 1 0 2 2 2 2 Growth-arrest specific micro-tubule binding Tropomyosin PF00261.20 gi|336476498|ref|YP_004615639.1| - 0.0086 15.5 15.0 2.8 7.3 1.0 3.5 2 1 0 2 2 2 1 Tropomyosin DHR10 PF18595.1 gi|336476498|ref|YP_004615639.1| - 0.012 15.6 13.2 0.29 11.2 1.1 2.5 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain EMP24_GP25L PF01105.24 gi|336476498|ref|YP_004615639.1| - 0.013 15.4 7.4 0.83 9.6 0.0 2.8 2 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Laminin_II PF06009.12 gi|336476498|ref|YP_004615639.1| - 0.017 15.2 5.7 0.017 15.2 5.7 3.0 1 1 2 3 3 3 0 Laminin Domain II Spc7 PF08317.11 gi|336476498|ref|YP_004615639.1| - 0.032 13.1 16.5 0.44 9.4 2.2 2.3 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF812 PF05667.11 gi|336476498|ref|YP_004615639.1| - 0.033 13.1 13.6 0.077 11.9 3.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF812) DUF2935 PF11155.8 gi|336476498|ref|YP_004615639.1| - 0.044 14.1 0.4 0.41 11.0 0.4 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) ATG16 PF08614.11 gi|336476498|ref|YP_004615639.1| - 0.046 14.0 13.3 0.77 9.9 5.6 2.4 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) CCDC144C PF14915.6 gi|336476498|ref|YP_004615639.1| - 0.046 12.8 15.9 0.75 8.9 9.1 2.3 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region BLOC1_2 PF10046.9 gi|336476498|ref|YP_004615639.1| - 0.093 13.0 16.9 0.55 10.6 3.7 3.4 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MbeD_MobD PF04899.12 gi|336476498|ref|YP_004615639.1| - 0.11 12.6 2.7 11 6.3 0.1 2.6 2 0 0 2 2 2 0 MbeD/MobD like CLZ PF16526.5 gi|336476498|ref|YP_004615639.1| - 0.12 12.8 13.6 0.41 11.0 1.3 4.1 2 2 2 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF16 PF01519.16 gi|336476498|ref|YP_004615639.1| - 0.18 12.3 18.8 0.19 12.2 5.9 3.2 1 1 2 3 3 3 0 Protein of unknown function DUF16 CorA PF01544.18 gi|336476498|ref|YP_004615639.1| - 0.22 10.8 12.2 0.2 10.9 3.9 2.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF4201 PF13870.6 gi|336476498|ref|YP_004615639.1| - 0.53 10.0 10.5 6.2 6.5 1.9 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4201) HemX PF04375.14 gi|336476498|ref|YP_004615639.1| - 0.64 9.2 10.6 1.1 8.5 4.5 2.8 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF724 PF05266.14 gi|336476498|ref|YP_004615639.1| - 0.66 9.8 16.2 2.3 8.0 5.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF724) DUF948 PF06103.11 gi|336476498|ref|YP_004615639.1| - 0.76 10.1 8.3 0.69 10.2 2.0 2.7 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4407 PF14362.6 gi|336476498|ref|YP_004615639.1| - 0.83 9.0 3.0 1.3 8.3 3.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4094 PF13334.6 gi|336476498|ref|YP_004615639.1| - 1.1 9.7 6.5 6.1 7.3 0.2 3.5 1 1 1 3 3 3 0 Domain of unknown function (DUF4094) Fez1 PF06818.15 gi|336476498|ref|YP_004615639.1| - 1.2 9.6 14.9 0.15 12.5 4.9 2.4 1 1 1 2 2 2 0 Fez1 MscS_porin PF12795.7 gi|336476498|ref|YP_004615639.1| - 1.2 8.6 13.4 0.092 12.3 6.2 2.0 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain DUF5082 PF16888.5 gi|336476498|ref|YP_004615639.1| - 1.3 9.3 14.3 0.21 11.8 4.5 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) Exonuc_VII_L PF02601.15 gi|336476498|ref|YP_004615639.1| - 1.6 8.2 10.5 15 5.1 10.3 2.0 1 1 0 1 1 1 0 Exonuclease VII, large subunit FapA PF03961.13 gi|336476498|ref|YP_004615639.1| - 1.7 7.2 16.6 0.15 10.7 5.2 2.2 1 1 1 2 2 2 0 Flagellar Assembly Protein A MCPsignal PF00015.21 gi|336476498|ref|YP_004615639.1| - 1.7 8.4 8.6 4.5 7.0 2.0 2.4 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain CC2-LZ PF16516.5 gi|336476498|ref|YP_004615639.1| - 1.7 9.0 13.5 0.72 10.3 2.2 3.0 2 1 1 3 3 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Med9 PF07544.13 gi|336476498|ref|YP_004615639.1| - 1.8 8.7 12.0 3.9 7.6 2.7 4.3 3 2 1 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 Pox_A_type_inc PF04508.12 gi|336476498|ref|YP_004615639.1| - 1.8 8.6 9.4 1.2 9.1 0.8 3.7 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat WXG100 PF06013.12 gi|336476498|ref|YP_004615639.1| - 1.8 8.9 8.3 0.85 9.9 2.5 2.9 3 1 0 3 3 2 0 Proteins of 100 residues with WXG Jnk-SapK_ap_N PF09744.9 gi|336476498|ref|YP_004615639.1| - 1.9 8.7 15.8 5.1 7.3 2.9 2.4 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Peptidase_C65 PF10275.9 gi|336476498|ref|YP_004615639.1| - 1.9 7.9 9.4 6.7 6.1 2.0 2.2 2 0 0 2 2 2 0 Peptidase C65 Otubain Tropomyosin_1 PF12718.7 gi|336476498|ref|YP_004615639.1| - 2.4 8.3 21.0 6.1 7.0 2.1 3.2 2 1 1 3 3 3 0 Tropomyosin like V_ATPase_I PF01496.19 gi|336476498|ref|YP_004615639.1| - 2.4 5.9 18.9 0.39 8.6 8.5 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF1090 PF06476.12 gi|336476498|ref|YP_004615639.1| - 2.5 8.2 5.8 9.1 6.4 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1090) DUF2802 PF10975.8 gi|336476498|ref|YP_004615639.1| - 2.6 8.2 4.4 7.9 6.7 0.3 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2802) Noelin-1 PF12308.8 gi|336476498|ref|YP_004615639.1| - 2.8 8.0 4.9 1.8 8.6 0.2 2.8 2 1 1 3 3 3 0 Neurogenesis glycoprotein Uds1 PF15456.6 gi|336476498|ref|YP_004615639.1| - 2.9 8.0 7.6 95 3.2 0.8 3.1 1 1 1 2 2 2 0 Up-regulated During Septation ORF6C PF10552.9 gi|336476498|ref|YP_004615639.1| - 3 7.9 9.7 1.1 9.4 1.4 2.9 2 1 2 4 4 4 0 ORF6C domain Fib_alpha PF08702.10 gi|336476498|ref|YP_004615639.1| - 3.2 7.9 17.3 5.3 7.2 6.3 2.8 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.6 gi|336476498|ref|YP_004615639.1| - 3.2 8.2 15.4 0.049 14.1 2.3 3.5 3 2 0 3 3 2 0 Snapin/Pallidin DASH_Duo1 PF08651.10 gi|336476498|ref|YP_004615639.1| - 4.3 7.2 9.4 0.43 10.4 0.5 3.2 2 1 1 3 3 3 0 DASH complex subunit Duo1 TBCC_N PF16752.5 gi|336476498|ref|YP_004615639.1| - 4.6 7.7 15.1 1.3 9.5 6.0 2.6 1 1 0 2 2 2 0 Tubulin-specific chaperone C N-terminal domain Syntaxin-6_N PF09177.11 gi|336476498|ref|YP_004615639.1| - 4.9 7.8 12.2 18 5.9 4.1 3.5 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Allexi_40kDa PF05549.11 gi|336476498|ref|YP_004615639.1| - 5.9 6.3 12.7 1.3 8.5 5.1 2.5 1 1 0 2 2 2 0 Allexivirus 40kDa protein Atg14 PF10186.9 gi|336476498|ref|YP_004615639.1| - 5.9 5.9 10.5 0.68 9.0 2.2 2.2 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Leu_zip PF15294.6 gi|336476498|ref|YP_004615639.1| - 6.1 6.3 20.4 0.91 9.0 4.7 3.1 1 1 2 3 3 3 0 Leucine zipper DUF489 PF04356.12 gi|336476498|ref|YP_004615639.1| - 6.3 6.8 7.8 6.6 6.7 1.8 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF489) V-SNARE PF05008.15 gi|336476498|ref|YP_004615639.1| - 7.8 7.0 11.6 4.6 7.7 3.0 2.8 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus UPF0242 PF06785.11 gi|336476498|ref|YP_004615639.1| - 8.7 6.4 18.6 1.8 8.6 7.2 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus HIP1_clath_bdg PF16515.5 gi|336476498|ref|YP_004615639.1| - 8.9 7.0 13.3 0.36 11.5 2.9 2.7 3 0 0 3 3 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Spc24 PF08286.11 gi|336476498|ref|YP_004615639.1| - 9 6.6 22.0 2.9 8.2 3.2 3.8 2 1 1 3 3 3 0 Spc24 subunit of Ndc80 XhlA PF10779.9 gi|336476498|ref|YP_004615639.1| - 9.2 6.6 19.5 1.2 9.4 0.4 4.1 3 1 0 4 4 3 0 Haemolysin XhlA TolA_bind_tri PF16331.5 gi|336476498|ref|YP_004615639.1| - 9.7 6.4 12.0 2.6 8.2 1.8 3.7 3 1 1 4 4 3 0 TolA binding protein trimerisation PIRT PF15099.6 gi|336476501|ref|YP_004615642.1| - 3 7.4 9.6 0.39 10.3 0.2 2.8 2 1 1 3 3 3 0 Phosphoinositide-interacting protein family Arch_flagellin PF01917.16 gi|336476502|ref|YP_004615643.1| - 4.4e-35 121.3 6.4 5.6e-35 120.9 6.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|336476503|ref|YP_004615644.1| - 1.2e-37 129.6 7.6 1.9e-37 129.0 7.6 1.3 1 0 0 1 1 1 1 Archaebacterial flagellin RXLR PF16810.5 gi|336476503|ref|YP_004615644.1| - 0.14 12.6 2.0 0.51 10.8 2.0 1.8 1 1 0 1 1 1 0 RXLR phytopathogen effector protein, Avirulence activity DUF2749 PF10907.8 gi|336476503|ref|YP_004615644.1| - 1.3 9.2 3.8 1.2 9.4 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) Arch_flagellin PF01917.16 gi|336476504|ref|YP_004615645.1| - 7.9e-35 120.5 7.4 1.1e-34 120.0 7.4 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|336476505|ref|YP_004615646.1| - 3.2e-26 92.5 5.6 4e-26 92.2 5.6 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin EF-hand_5 PF13202.6 gi|336476506|ref|YP_004615647.1| - 0.01 15.3 0.2 0.022 14.2 0.2 1.6 1 0 0 1 1 1 0 EF hand EF-hand_1 PF00036.32 gi|336476506|ref|YP_004615647.1| - 0.043 13.4 0.7 0.12 12.0 0.2 2.0 2 0 0 2 2 2 0 EF hand DUF4969 PF16339.5 gi|336476507|ref|YP_004615648.1| - 0.075 13.4 0.1 0.075 13.4 0.1 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4969) Acetyltransf_1 PF00583.25 gi|336476508|ref|YP_004615649.1| - 6.7e-07 29.5 0.0 1.6e-06 28.3 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336476508|ref|YP_004615649.1| - 0.0094 16.4 0.0 0.019 15.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336476508|ref|YP_004615649.1| - 0.031 14.2 0.0 0.09 12.7 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336476508|ref|YP_004615649.1| - 0.075 13.0 0.1 0.42 10.6 0.1 2.1 1 1 0 1 1 1 0 FR47-like protein Na_H_Exchanger PF00999.21 gi|336476509|ref|YP_004615650.1| - 0.0035 16.2 0.7 0.0035 16.2 0.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Na_H_antiporter PF03553.14 gi|336476509|ref|YP_004615650.1| - 0.15 11.2 2.0 0.16 11.2 2.0 1.0 1 0 0 1 1 1 0 Na+/H+ antiporter family GRAM PF02893.20 gi|336476510|ref|YP_004615651.1| - 0.0053 16.6 0.0 0.012 15.5 0.0 1.6 1 1 0 1 1 1 1 GRAM domain CheF-arch PF04283.12 gi|336476510|ref|YP_004615651.1| - 0.038 13.7 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 Chemotaxis signal transduction system protein F from archaea V4R PF02830.18 gi|336476511|ref|YP_004615652.1| - 1.3e-05 25.1 0.7 2.8e-05 24.1 0.7 1.5 1 0 0 1 1 1 1 V4R domain LSM PF01423.22 gi|336476512|ref|YP_004615653.1| - 0.00094 18.8 0.1 0.0014 18.3 0.1 1.3 1 0 0 1 1 1 1 LSM domain ATPase PF06745.13 gi|336476513|ref|YP_004615654.1| - 1.5e-45 155.3 0.0 2.4e-45 154.7 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|336476513|ref|YP_004615654.1| - 5.1e-08 32.7 0.0 1.2e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|336476513|ref|YP_004615654.1| - 0.00015 20.5 0.0 0.087 11.4 0.0 2.2 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_10 PF12846.7 gi|336476513|ref|YP_004615654.1| - 0.00067 18.7 0.0 0.00096 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain Sigma54_activat PF00158.26 gi|336476513|ref|YP_004615654.1| - 0.001 18.8 0.1 0.14 11.8 0.0 2.8 3 0 0 3 3 3 1 Sigma-54 interaction domain Rad51 PF08423.11 gi|336476513|ref|YP_004615654.1| - 0.0011 18.3 0.0 0.0014 17.9 0.0 1.2 1 0 0 1 1 1 1 Rad51 AAA_24 PF13479.6 gi|336476513|ref|YP_004615654.1| - 0.0013 18.5 0.0 0.0029 17.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|336476513|ref|YP_004615654.1| - 0.0023 18.0 0.0 0.0053 16.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336476513|ref|YP_004615654.1| - 0.019 14.7 0.2 0.04 13.7 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|336476513|ref|YP_004615654.1| - 0.033 14.3 0.0 0.1 12.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|336476513|ref|YP_004615654.1| - 0.037 13.5 0.1 0.071 12.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region RecA PF00154.21 gi|336476513|ref|YP_004615654.1| - 0.039 13.4 0.0 0.06 12.8 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein IstB_IS21 PF01695.17 gi|336476513|ref|YP_004615654.1| - 0.069 12.9 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein MEDS PF14417.6 gi|336476513|ref|YP_004615654.1| - 0.084 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain ABC_tran PF00005.27 gi|336476513|ref|YP_004615654.1| - 0.097 13.2 0.0 0.42 11.1 0.0 2.0 2 0 0 2 2 2 0 ABC transporter AAA_22 PF13401.6 gi|336476513|ref|YP_004615654.1| - 0.16 12.3 0.0 0.38 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|336476513|ref|YP_004615654.1| - 0.2 12.0 0.2 0.53 10.7 0.2 1.7 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1_C PF08438.10 gi|336476514|ref|YP_004615655.1| - 0.032 14.8 0.5 0.28 11.7 0.5 2.3 1 1 0 1 1 1 0 GTPase of unknown function C-terminal Penicillinase_R PF03965.16 gi|336476515|ref|YP_004615656.1| - 0.00015 22.1 2.5 0.00024 21.4 0.1 2.5 2 0 0 2 2 2 1 Penicillinase repressor BLOC1_2 PF10046.9 gi|336476515|ref|YP_004615656.1| - 0.00045 20.5 20.7 0.6 10.4 0.1 5.2 4 1 1 5 5 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Apolipoprotein PF01442.18 gi|336476515|ref|YP_004615656.1| - 0.0014 18.5 14.2 0.047 13.6 7.9 3.8 2 1 0 2 2 2 1 Apolipoprotein A1/A4/E domain DUF4795 PF16043.5 gi|336476515|ref|YP_004615656.1| - 0.0031 17.1 2.7 0.0031 17.1 2.7 4.1 2 1 1 3 3 2 1 Domain of unknown function (DUF4795) DUF5085 PF16895.5 gi|336476515|ref|YP_004615656.1| - 0.0078 16.6 4.2 12 6.2 0.0 4.0 3 0 0 3 3 3 0 Domain of unknown function (DUF5085) DUF2935 PF11155.8 gi|336476515|ref|YP_004615656.1| - 0.008 16.5 1.1 0.008 16.5 1.1 3.5 1 1 0 2 2 2 1 Domain of unknown function (DUF2935) Type2_restr_D3 PF16902.5 gi|336476515|ref|YP_004615656.1| - 0.035 14.0 8.7 0.34 10.9 0.7 4.1 3 0 0 3 3 3 0 Type-2 restriction enzyme D3 domain OmpH PF03938.14 gi|336476515|ref|YP_004615656.1| - 0.047 14.0 19.6 0.086 13.2 1.6 3.7 3 1 0 3 3 3 0 Outer membrane protein (OmpH-like) z-alpha PF02295.17 gi|336476515|ref|YP_004615656.1| - 0.097 12.7 0.8 0.28 11.3 0.8 1.8 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain GCP_C_terminal PF04130.13 gi|336476515|ref|YP_004615656.1| - 0.12 11.8 9.2 0.013 15.0 1.5 2.6 2 1 1 3 3 3 0 Gamma tubulin complex component C-terminal Baculo_PEP_C PF04513.12 gi|336476515|ref|YP_004615656.1| - 0.2 11.7 18.5 0.85 9.7 5.4 5.0 3 1 1 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus Golgin_A5 PF09787.9 gi|336476515|ref|YP_004615656.1| - 0.2 11.1 34.9 0.029 13.8 6.9 3.5 2 1 1 3 3 3 0 Golgin subfamily A member 5 T4SS PF07996.11 gi|336476515|ref|YP_004615656.1| - 0.21 12.0 11.6 0.46 10.9 2.2 3.5 3 2 1 4 4 3 0 Type IV secretion system proteins DUF4407 PF14362.6 gi|336476515|ref|YP_004615656.1| - 0.33 10.3 13.9 0.083 12.2 0.5 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4407) DUF1664 PF07889.12 gi|336476515|ref|YP_004615656.1| - 0.33 11.0 23.9 0.44 10.6 2.2 5.5 4 2 1 5 5 5 0 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|336476515|ref|YP_004615656.1| - 0.34 10.8 25.9 0.31 10.9 0.3 5.4 2 1 2 4 4 4 0 Sec34-like family TSC22 PF01166.18 gi|336476515|ref|YP_004615656.1| - 0.53 10.6 6.9 7.2 7.0 0.1 3.8 3 0 0 3 3 3 0 TSC-22/dip/bun family NPV_P10 PF05531.12 gi|336476515|ref|YP_004615656.1| - 0.62 10.6 23.2 3.2 8.3 0.1 6.0 3 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein LPP PF04728.13 gi|336476515|ref|YP_004615656.1| - 0.9 10.0 22.2 6.2 7.3 0.4 5.9 5 1 0 5 5 4 0 Lipoprotein leucine-zipper bZIP_2 PF07716.15 gi|336476515|ref|YP_004615656.1| - 1.3 9.1 6.7 6.1 7.0 0.2 3.8 3 0 0 3 3 3 0 Basic region leucine zipper YtxH PF12732.7 gi|336476515|ref|YP_004615656.1| - 1.5 9.4 10.4 1.5 9.4 0.1 4.7 3 3 0 3 3 3 0 YtxH-like protein DUF842 PF05811.13 gi|336476515|ref|YP_004615656.1| - 3.6 7.3 7.4 2.9 7.6 0.4 3.1 2 1 1 3 3 3 0 Eukaryotic protein of unknown function (DUF842) Latarcin PF10279.9 gi|336476515|ref|YP_004615656.1| - 4.7 7.7 20.3 13 6.3 0.9 4.7 1 1 1 2 2 2 0 Latarcin precursor DUF948 PF06103.11 gi|336476515|ref|YP_004615656.1| - 6.5 7.1 16.5 1.5 9.2 1.4 5.4 3 2 2 6 6 5 0 Bacterial protein of unknown function (DUF948) GLTP PF08718.11 gi|336476515|ref|YP_004615656.1| - 9.7 6.5 9.0 20 5.5 3.4 3.3 2 2 0 2 2 2 0 Glycolipid transfer protein (GLTP) Kinase-PPPase PF03618.14 gi|336476516|ref|YP_004615657.1| - 0.001 18.9 0.1 0.0014 18.5 0.1 1.4 1 1 0 1 1 1 1 Kinase/pyrophosphorylase HTH_54 PF18607.1 gi|336476516|ref|YP_004615657.1| - 0.022 14.8 0.5 4.4 7.4 0.2 3.2 2 1 0 2 2 2 0 ParA helix turn helix domain KIX PF02172.16 gi|336476516|ref|YP_004615657.1| - 0.033 14.4 0.1 0.098 12.9 0.1 1.8 1 0 0 1 1 1 0 KIX domain HisKA_2 PF07568.12 gi|336476517|ref|YP_004615658.1| - 5.8e-25 87.2 2.1 2e-24 85.4 2.1 2.0 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.12 gi|336476517|ref|YP_004615658.1| - 2.5e-15 56.5 0.2 6.3e-15 55.2 0.2 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|336476517|ref|YP_004615658.1| - 1.6e-07 31.8 0.3 6e-07 30.0 0.3 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|336476517|ref|YP_004615658.1| - 2.9e-07 30.7 1.8 1.9e-05 24.9 0.0 3.0 3 0 0 3 3 3 1 PAS domain HWE_HK PF07536.14 gi|336476517|ref|YP_004615658.1| - 7.3e-06 26.6 0.2 1.5e-05 25.6 0.2 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_11 PF14598.6 gi|336476517|ref|YP_004615658.1| - 1.2e-05 25.4 0.1 5.1e-05 23.4 0.0 2.1 3 0 0 3 3 3 1 PAS domain PAS_8 PF13188.7 gi|336476517|ref|YP_004615658.1| - 3.9e-05 23.6 0.0 0.00039 20.4 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|336476517|ref|YP_004615658.1| - 5.2e-05 23.2 0.0 0.00011 22.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|336476517|ref|YP_004615658.1| - 0.00017 21.5 0.1 0.0016 18.5 0.0 2.4 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.6 gi|336476517|ref|YP_004615658.1| - 0.034 14.0 0.1 0.09 12.6 0.1 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|336476517|ref|YP_004615658.1| - 0.074 13.3 0.1 1.7 8.9 0.0 2.5 3 0 0 3 3 3 0 PAS fold Tsi6 PF18660.1 gi|336476517|ref|YP_004615658.1| - 0.17 12.0 2.7 3.6 7.7 0.1 3.2 2 1 1 3 3 3 0 Tsi6 MCPsignal PF00015.21 gi|336476518|ref|YP_004615659.1| - 2e-55 187.2 57.5 1e-50 171.9 28.1 4.2 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|336476518|ref|YP_004615659.1| - 1.8e-23 83.6 6.5 1.8e-23 83.6 6.5 3.9 3 1 1 4 4 4 1 Cache domain HAMP PF00672.25 gi|336476518|ref|YP_004615659.1| - 2.4e-09 37.4 1.8 5.3e-07 29.9 0.0 4.1 3 1 0 3 3 3 1 HAMP domain DUF948 PF06103.11 gi|336476518|ref|YP_004615659.1| - 0.00011 22.3 45.5 0.013 15.8 2.0 6.5 4 2 2 6 6 5 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|336476518|ref|YP_004615659.1| - 0.00013 22.0 35.5 0.041 13.9 5.0 4.5 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|336476518|ref|YP_004615659.1| - 0.0031 17.8 34.9 0.09 13.1 6.5 5.2 2 2 3 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|336476518|ref|YP_004615659.1| - 0.0052 16.8 42.3 0.03 14.3 10.2 4.7 2 2 2 4 4 4 2 Laminin Domain II NPV_P10 PF05531.12 gi|336476518|ref|YP_004615659.1| - 0.011 16.2 3.1 0.011 16.2 3.1 5.9 3 2 3 6 6 5 0 Nucleopolyhedrovirus P10 protein AIP3 PF03915.13 gi|336476518|ref|YP_004615659.1| - 0.034 13.2 37.6 0.1 11.6 14.9 2.2 1 1 0 2 2 2 0 Actin interacting protein 3 RPW8 PF05659.11 gi|336476518|ref|YP_004615659.1| - 0.061 13.0 11.8 0.39 10.4 2.2 3.3 2 2 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 SeqA_N PF17206.3 gi|336476518|ref|YP_004615659.1| - 0.11 11.8 0.1 0.41 10.0 0.1 1.9 2 0 0 2 2 2 0 SeqA protein N-terminal domain DASH_Dad1 PF08649.10 gi|336476518|ref|YP_004615659.1| - 0.12 12.6 16.0 11 6.3 0.3 6.5 6 1 1 7 7 6 0 DASH complex subunit Dad1 Med30 PF11315.8 gi|336476518|ref|YP_004615659.1| - 0.17 12.1 17.8 1.2 9.3 4.0 2.8 2 1 1 3 3 3 0 Mediator complex subunit 30 Mce4_CUP1 PF11887.8 gi|336476518|ref|YP_004615659.1| - 0.2 11.1 12.4 0.12 11.8 3.2 2.8 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative Goodbye PF17109.5 gi|336476518|ref|YP_004615659.1| - 0.24 11.9 22.2 4.1 7.9 1.7 4.2 2 2 2 4 4 4 0 fungal STAND N-terminal Goodbye domain Atg14 PF10186.9 gi|336476518|ref|YP_004615659.1| - 0.49 9.4 26.0 0.035 13.2 7.9 2.3 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 FUSC PF04632.12 gi|336476518|ref|YP_004615659.1| - 0.65 8.5 15.6 0.76 8.2 4.7 2.2 1 1 1 2 2 2 0 Fusaric acid resistance protein family dCache_2 PF08269.11 gi|336476518|ref|YP_004615659.1| - 0.86 8.7 0.0 0.86 8.7 0.0 3.8 3 1 0 3 3 3 0 Cache domain Baculo_F PF12259.8 gi|336476518|ref|YP_004615659.1| - 1.5 7.2 16.9 0.067 11.7 3.1 2.7 2 0 0 2 2 2 0 Baculovirus F protein DUF2277 PF10041.9 gi|336476518|ref|YP_004615659.1| - 2.1 8.7 0.0 2.1 8.7 0.0 4.7 2 2 1 4 4 4 0 Uncharacterized conserved protein (DUF2277) Spc7 PF08317.11 gi|336476518|ref|YP_004615659.1| - 2.1 7.1 41.0 0.22 10.4 16.1 3.2 3 1 0 3 3 3 0 Spc7 kinetochore protein Syntaxin-6_N PF09177.11 gi|336476518|ref|YP_004615659.1| - 2.5 8.7 33.6 0.24 12.0 3.8 4.9 3 2 2 5 5 5 0 Syntaxin 6, N-terminal Seryl_tRNA_N PF02403.22 gi|336476518|ref|YP_004615659.1| - 2.7 8.2 38.1 2.2 8.5 3.8 4.8 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain LXG PF04740.12 gi|336476518|ref|YP_004615659.1| - 4.1 7.0 35.3 2.2 7.9 11.8 4.6 2 2 2 4 4 4 0 LXG domain of WXG superfamily Filament PF00038.21 gi|336476518|ref|YP_004615659.1| - 4.4 6.8 33.6 1.4 8.4 11.2 3.0 1 1 1 3 3 3 0 Intermediate filament protein PhageMin_Tail PF10145.9 gi|336476518|ref|YP_004615659.1| - 5.9 6.7 42.5 6.8 6.5 15.2 2.6 1 1 0 2 2 2 0 Phage-related minor tail protein Serine_rich PF08824.10 gi|336476518|ref|YP_004615659.1| - 7.8 6.5 21.1 6.6 6.7 7.2 2.8 2 1 0 2 2 2 0 Serine rich protein interaction domain WXG100 PF06013.12 gi|336476518|ref|YP_004615659.1| - 7.9 6.8 43.6 4.5 7.6 13.1 5.6 2 2 1 4 4 4 0 Proteins of 100 residues with WXG Vip3A_N PF12495.8 gi|336476518|ref|YP_004615659.1| - 9.7 6.1 16.8 0.18 11.7 1.8 3.7 3 1 0 3 3 3 0 Vegetative insecticide protein 3A N terminal MAD PF05557.13 gi|336476518|ref|YP_004615659.1| - 9.9 4.4 37.1 0.55 8.5 13.8 2.2 1 1 1 2 2 2 0 Mitotic checkpoint protein CheW PF01584.19 gi|336476519|ref|YP_004615660.1| - 1.6e-41 141.2 2.5 1.9e-41 140.9 2.5 1.1 1 0 0 1 1 1 1 CheW-like domain Response_reg PF00072.24 gi|336476520|ref|YP_004615661.1| - 8.4e-29 100.0 2.4 9.3e-29 99.9 2.4 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheB_methylest PF01339.17 gi|336476521|ref|YP_004615662.1| - 5.6e-59 198.7 0.1 1.4e-58 197.4 0.0 1.6 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 gi|336476521|ref|YP_004615662.1| - 2e-23 82.7 0.4 6e-23 81.1 0.1 1.9 2 0 0 2 2 2 1 Response regulator receiver domain ATP-synt_ab PF00006.25 gi|336476521|ref|YP_004615662.1| - 0.013 15.1 0.0 0.033 13.8 0.0 1.6 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain ThiP_synth PF10120.9 gi|336476521|ref|YP_004615662.1| - 0.063 12.9 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 Thiamine-phosphate synthase P2 PF07194.11 gi|336476522|ref|YP_004615663.1| - 1.5e-23 82.7 2.5 7.5e-23 80.4 2.5 2.4 1 0 0 1 1 1 1 P2 response regulator binding domain CheW PF01584.19 gi|336476522|ref|YP_004615663.1| - 4.5e-23 81.4 3.0 1e-22 80.2 3.0 1.7 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 gi|336476522|ref|YP_004615663.1| - 2.3e-20 72.6 1.7 9e-20 70.7 0.4 2.4 2 0 0 2 2 2 1 Hpt domain H-kinase_dim PF02895.14 gi|336476522|ref|YP_004615663.1| - 2.8e-17 62.9 4.7 2.8e-17 62.9 4.7 2.3 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c PF02518.26 gi|336476522|ref|YP_004615663.1| - 2.5e-16 60.1 0.6 2.5e-16 60.1 0.6 2.7 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|336476522|ref|YP_004615663.1| - 0.0011 18.8 1.0 0.0039 17.0 1.0 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|336476522|ref|YP_004615663.1| - 0.0075 16.2 0.2 0.085 12.8 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Snf7 PF03357.21 gi|336476522|ref|YP_004615663.1| - 0.011 15.3 1.4 0.011 15.3 1.4 2.4 2 0 0 2 2 2 0 Snf7 RIH_assoc PF08454.11 gi|336476522|ref|YP_004615663.1| - 0.12 12.2 3.1 0.26 11.1 0.4 2.5 2 0 0 2 2 2 0 RyR and IP3R Homology associated CheC PF04509.12 gi|336476523|ref|YP_004615664.1| - 9.6e-09 35.0 0.0 1.9e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 CheC-like family CheX PF13690.6 gi|336476523|ref|YP_004615664.1| - 0.034 14.3 0.1 1.6 9.0 0.0 2.5 2 0 0 2 2 2 0 Chemotaxis phosphatase CheX CheR PF01739.18 gi|336476524|ref|YP_004615665.1| - 5.7e-55 185.8 0.1 7.5e-55 185.4 0.1 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|336476524|ref|YP_004615665.1| - 5.4e-13 48.4 0.6 1.4e-12 47.1 0.1 2.0 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|336476524|ref|YP_004615665.1| - 7.8e-05 23.3 0.1 0.019 15.7 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336476524|ref|YP_004615665.1| - 0.0033 17.3 0.2 1.8 8.3 0.1 2.3 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336476524|ref|YP_004615665.1| - 0.0051 17.4 0.0 0.079 13.6 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336476524|ref|YP_004615665.1| - 0.013 16.1 0.0 1.3 9.8 0.0 2.6 2 0 0 2 2 2 0 Methyltransferase domain Sialidase PF02973.16 gi|336476524|ref|YP_004615665.1| - 1 8.8 4.6 0.45 10.0 0.2 2.4 2 1 1 3 3 3 0 Sialidase, N-terminal domain CheC PF04509.12 gi|336476525|ref|YP_004615666.1| - 1.2e-17 63.5 0.6 1e-08 34.9 0.1 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|336476525|ref|YP_004615666.1| - 1.9e-10 40.8 2.8 2.4e-05 24.4 0.1 2.8 3 0 0 3 3 3 2 Chemotaxis phosphatase CheX DUF1877 PF08974.10 gi|336476525|ref|YP_004615666.1| - 0.089 12.9 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1877) CheD PF03975.13 gi|336476526|ref|YP_004615667.1| - 3e-33 114.2 0.4 3.7e-33 113.9 0.4 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 gi|336476527|ref|YP_004615668.1| - 1.8e-08 34.2 0.0 0.0057 16.5 0.0 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|336476527|ref|YP_004615668.1| - 0.0022 18.2 0.3 0.87 9.8 0.0 2.2 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX gag_pre-integrs PF13976.6 gi|336476528|ref|YP_004615669.1| - 0.091 12.6 0.5 0.22 11.4 0.5 1.7 1 0 0 1 1 1 0 GAG-pre-integrase domain PYC_OADA PF02436.18 gi|336476531|ref|YP_004615672.1| - 5.5e-58 196.0 0.1 9.1e-58 195.3 0.1 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|336476531|ref|YP_004615672.1| - 3e-46 158.1 0.0 3.8e-46 157.8 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|336476531|ref|YP_004615672.1| - 3.8e-19 68.3 3.3 1.2e-18 66.7 3.3 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|336476531|ref|YP_004615672.1| - 3.2e-10 39.7 0.8 0.00016 21.4 0.2 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|336476531|ref|YP_004615672.1| - 0.0003 20.1 0.3 0.43 9.8 0.0 2.4 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|336476531|ref|YP_004615672.1| - 0.0046 17.6 0.3 5 7.9 0.1 2.6 2 0 0 2 2 2 2 HlyD family secretion protein PYNP_C PF07831.13 gi|336476531|ref|YP_004615672.1| - 0.044 13.4 0.3 2.2 8.0 0.0 2.5 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain PTS_EIIA_1 PF00358.20 gi|336476531|ref|YP_004615672.1| - 0.14 11.9 0.9 1.4 8.7 0.0 2.6 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 QRPTase_N PF02749.16 gi|336476531|ref|YP_004615672.1| - 0.17 11.9 0.3 14 5.8 0.0 2.8 2 1 1 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain CPSase_L_D2 PF02786.17 gi|336476532|ref|YP_004615673.1| - 4.7e-77 258.2 0.0 7.7e-77 257.5 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|336476532|ref|YP_004615673.1| - 4.8e-47 159.1 0.0 1.6e-46 157.4 0.0 2.0 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|336476532|ref|YP_004615673.1| - 3.7e-43 146.0 0.0 8.3e-43 144.9 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|336476532|ref|YP_004615673.1| - 2.2e-13 50.2 0.1 9.7e-13 48.1 0.1 2.1 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|336476532|ref|YP_004615673.1| - 1.5e-05 24.7 0.1 3.2e-05 23.6 0.1 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|336476532|ref|YP_004615673.1| - 4.2e-05 23.6 0.0 7.1e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|336476532|ref|YP_004615673.1| - 0.00015 21.5 0.0 0.044 13.4 0.0 2.3 2 0 0 2 2 2 2 RimK-like ATP-grasp domain GARS_A PF01071.19 gi|336476532|ref|YP_004615673.1| - 0.0019 18.0 0.0 0.0031 17.3 0.0 1.4 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_Ter PF15632.6 gi|336476532|ref|YP_004615673.1| - 0.0046 16.7 0.0 0.01 15.6 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.6 gi|336476532|ref|YP_004615673.1| - 0.021 14.5 0.0 0.044 13.4 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain BPL_LplA_LipB PF03099.19 gi|336476533|ref|YP_004615674.1| - 4.3e-18 65.5 0.1 9.4e-18 64.4 0.1 1.5 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|336476533|ref|YP_004615674.1| - 2.2e-16 59.5 0.2 5.4e-16 58.3 0.2 1.7 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|336476533|ref|YP_004615674.1| - 1.7e-07 30.7 0.0 4.8e-07 29.2 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding BPL_LplA_LipB_2 PF16917.5 gi|336476533|ref|YP_004615674.1| - 1.5e-06 27.8 0.0 1.7e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|336476533|ref|YP_004615674.1| - 3.2e-05 23.7 0.0 8.2e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain RuvX PF03652.15 gi|336476533|ref|YP_004615674.1| - 0.0018 18.7 0.0 0.54 10.6 0.0 2.3 2 0 0 2 2 2 1 Holliday junction resolvase Put_DNA-bind_N PF06971.13 gi|336476533|ref|YP_004615674.1| - 0.0032 17.4 0.1 0.95 9.5 0.0 3.1 2 1 1 3 3 3 1 Putative DNA-binding protein N-terminus MarR PF01047.22 gi|336476533|ref|YP_004615674.1| - 0.0092 15.9 0.0 0.027 14.4 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|336476533|ref|YP_004615674.1| - 0.022 14.6 0.0 0.18 11.7 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_Tnp_Tc5 PF03221.16 gi|336476533|ref|YP_004615674.1| - 0.054 13.5 0.1 5.8 7.0 0.0 2.9 3 0 0 3 3 3 0 Tc5 transposase DNA-binding domain HTH_10 PF04967.12 gi|336476533|ref|YP_004615674.1| - 0.079 12.8 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.6 gi|336476533|ref|YP_004615674.1| - 0.084 12.7 0.0 0.22 11.4 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|336476533|ref|YP_004615674.1| - 0.095 12.7 0.0 0.72 9.9 0.0 2.4 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336476533|ref|YP_004615674.1| - 0.14 12.4 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain S-layer PF07752.11 gi|336476534|ref|YP_004615675.1| - 4.2e-09 35.8 0.1 5.9e-09 35.3 0.1 1.1 1 0 0 1 1 1 1 S-layer protein DUF3450 PF11932.8 gi|336476535|ref|YP_004615676.1| - 1.3e-06 28.0 27.6 0.00056 19.3 6.6 3.4 1 1 2 3 3 3 2 Protein of unknown function (DUF3450) CENP-F_leu_zip PF10473.9 gi|336476535|ref|YP_004615676.1| - 2.6e-05 24.3 42.4 0.0072 16.3 19.1 3.1 2 1 1 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF724 PF05266.14 gi|336476535|ref|YP_004615676.1| - 0.00086 19.2 12.6 0.00086 19.2 12.6 3.1 2 1 1 3 3 3 1 Protein of unknown function (DUF724) DUF3584 PF12128.8 gi|336476535|ref|YP_004615676.1| - 0.001 16.8 34.3 0.0033 15.0 34.3 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) YabA PF06156.13 gi|336476535|ref|YP_004615676.1| - 0.0021 18.6 37.9 0.054 14.1 4.2 4.1 3 1 1 4 4 4 3 Initiation control protein YabA Laminin_I PF06008.14 gi|336476535|ref|YP_004615676.1| - 0.0026 17.5 33.3 0.037 13.7 14.1 3.1 2 1 0 2 2 2 1 Laminin Domain I APG6_N PF17675.1 gi|336476535|ref|YP_004615676.1| - 0.0027 18.2 40.6 0.11 13.1 13.9 3.6 1 1 2 3 3 3 2 Apg6 coiled-coil region GAS PF13851.6 gi|336476535|ref|YP_004615676.1| - 0.0028 17.0 41.9 0.026 13.9 20.0 2.5 2 1 0 2 2 2 2 Growth-arrest specific micro-tubule binding DUF1664 PF07889.12 gi|336476535|ref|YP_004615676.1| - 0.0036 17.3 25.1 0.4 10.7 11.9 4.0 1 1 1 3 3 3 2 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.22 gi|336476535|ref|YP_004615676.1| - 0.011 15.9 35.7 0.1 12.8 11.0 4.6 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Baculo_PEP_C PF04513.12 gi|336476535|ref|YP_004615676.1| - 0.012 15.7 19.5 0.75 9.8 12.2 3.3 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.12 gi|336476535|ref|YP_004615676.1| - 0.014 15.4 2.4 0.014 15.4 2.4 3.6 1 1 2 3 3 3 0 Laminin Domain II Jnk-SapK_ap_N PF09744.9 gi|336476535|ref|YP_004615676.1| - 0.014 15.6 17.0 0.014 15.6 17.0 3.1 1 1 1 3 3 3 0 JNK_SAPK-associated protein-1 TPR_MLP1_2 PF07926.12 gi|336476535|ref|YP_004615676.1| - 0.025 14.7 36.3 0.16 12.1 5.1 4.5 2 2 1 3 3 3 0 TPR/MLP1/MLP2-like protein Atg14 PF10186.9 gi|336476535|ref|YP_004615676.1| - 0.051 12.7 36.7 0.94 8.5 11.1 2.5 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Rab5-bind PF09311.11 gi|336476535|ref|YP_004615676.1| - 0.059 12.7 38.0 0.13 11.6 14.9 3.1 1 1 2 3 3 3 0 Rabaptin-like protein ATG16 PF08614.11 gi|336476535|ref|YP_004615676.1| - 0.11 12.7 34.3 0.61 10.3 14.7 2.7 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) PI3K_P85_iSH2 PF16454.5 gi|336476535|ref|YP_004615676.1| - 0.19 11.3 34.9 0.51 9.9 11.7 4.2 1 1 2 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Spc7 PF08317.11 gi|336476535|ref|YP_004615676.1| - 0.23 10.3 41.5 0.031 13.1 17.7 2.4 1 1 0 2 2 2 0 Spc7 kinetochore protein DUF4200 PF13863.6 gi|336476535|ref|YP_004615676.1| - 0.24 11.8 39.9 0.037 14.4 6.6 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) HTH_57 PF18679.1 gi|336476535|ref|YP_004615676.1| - 0.24 11.7 4.8 4.4 7.7 0.2 3.1 2 1 2 4 4 3 0 ThcOx helix turn helix domain MscS_porin PF12795.7 gi|336476535|ref|YP_004615676.1| - 0.32 10.5 39.0 1.4 8.4 11.3 4.0 1 1 3 4 4 4 0 Mechanosensitive ion channel porin domain Filament PF00038.21 gi|336476535|ref|YP_004615676.1| - 0.32 10.5 42.8 0.89 9.1 4.5 2.1 1 1 1 2 2 2 0 Intermediate filament protein GldM_N PF12081.8 gi|336476535|ref|YP_004615676.1| - 0.33 11.0 33.3 0.32 11.1 10.2 3.8 1 1 2 3 3 3 0 GldM N-terminal domain MCPsignal PF00015.21 gi|336476535|ref|YP_004615676.1| - 0.35 10.7 12.8 2.9 7.7 4.5 3.0 2 2 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Yuri_gagarin PF15934.5 gi|336476535|ref|YP_004615676.1| - 0.48 10.2 32.2 0.66 9.8 15.0 2.2 1 1 0 2 2 2 0 Yuri gagarin WXG100 PF06013.12 gi|336476535|ref|YP_004615676.1| - 0.49 10.7 11.8 13 6.1 0.6 5.2 2 2 0 4 4 4 0 Proteins of 100 residues with WXG ApoO PF09769.9 gi|336476535|ref|YP_004615676.1| - 0.57 10.2 10.1 13 5.7 0.1 3.8 2 2 1 4 4 4 0 Apolipoprotein O NPV_P10 PF05531.12 gi|336476535|ref|YP_004615676.1| - 0.81 10.2 22.4 9.6 6.8 7.7 5.1 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Sec34 PF04136.15 gi|336476535|ref|YP_004615676.1| - 0.86 9.5 24.7 1.1 9.2 0.4 4.2 1 1 4 5 5 5 0 Sec34-like family DUF4527 PF15030.6 gi|336476535|ref|YP_004615676.1| - 1.2 8.5 15.9 1.8 8.0 9.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4527) HOOK PF05622.12 gi|336476535|ref|YP_004615676.1| - 1.7 6.7 39.5 1.5 6.9 19.6 2.2 1 1 1 2 2 2 0 HOOK protein COG5 PF10392.9 gi|336476535|ref|YP_004615676.1| - 2 8.6 25.8 0.22 11.7 4.5 3.7 1 1 1 3 3 3 0 Golgi transport complex subunit 5 FUSC PF04632.12 gi|336476535|ref|YP_004615676.1| - 2.4 6.6 4.4 17 3.7 4.3 2.0 1 1 0 1 1 1 0 Fusaric acid resistance protein family KASH_CCD PF14662.6 gi|336476535|ref|YP_004615676.1| - 2.5 7.9 43.4 0.42 10.4 4.4 3.1 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 or KASH DUF4407 PF14362.6 gi|336476535|ref|YP_004615676.1| - 4 6.7 29.8 2 7.7 13.6 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4407) UPF0449 PF15136.6 gi|336476535|ref|YP_004615676.1| - 4.3 7.8 28.2 0.16 12.4 4.5 5.0 1 1 4 5 5 5 0 Uncharacterised protein family UPF0449 Fez1 PF06818.15 gi|336476535|ref|YP_004615676.1| - 4.8 7.6 35.8 1.8e+04 -9.1 35.8 2.4 1 1 0 1 1 0 0 Fez1 BST2 PF16716.5 gi|336476535|ref|YP_004615676.1| - 5.2 7.7 32.2 1.2 9.7 2.0 4.6 1 1 4 5 5 5 0 Bone marrow stromal antigen 2 Fib_alpha PF08702.10 gi|336476535|ref|YP_004615676.1| - 5.4 7.2 36.2 5.3 7.2 17.5 3.3 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family DUF5082 PF16888.5 gi|336476535|ref|YP_004615676.1| - 6.4 7.1 33.1 3.8 7.8 9.3 4.0 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) Sec8_exocyst PF04048.14 gi|336476535|ref|YP_004615676.1| - 6.6 6.6 27.6 3.1 7.7 7.5 3.6 1 1 3 4 4 4 0 Sec8 exocyst complex component specific domain DUF4795 PF16043.5 gi|336476535|ref|YP_004615676.1| - 6.7 6.3 40.3 1.7 8.2 13.4 3.8 1 1 1 2 2 1 0 Domain of unknown function (DUF4795) Mod_r PF07200.13 gi|336476535|ref|YP_004615676.1| - 7.9 6.6 40.1 4.1 7.5 14.8 3.7 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein YkyA PF10368.9 gi|336476535|ref|YP_004615676.1| - 8.2 6.1 45.4 3 7.5 17.4 3.1 1 1 2 3 3 3 0 Putative cell-wall binding lipoprotein IL2 PF00715.17 gi|336476535|ref|YP_004615676.1| - 9.2 6.2 12.5 4.6 7.2 5.3 2.6 2 1 0 2 2 2 0 Interleukin 2 Occludin_ELL PF07303.13 gi|336476535|ref|YP_004615676.1| - 9.2 7.1 32.1 1.9 9.3 6.2 4.4 1 1 3 4 4 4 0 Occludin homology domain Med9 PF07544.13 gi|336476535|ref|YP_004615676.1| - 9.7 6.4 31.4 0.068 13.3 4.4 4.3 2 2 2 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 PspA_IM30 PF04012.12 gi|336476535|ref|YP_004615676.1| - 10 5.7 31.5 31 4.1 11.0 4.0 1 1 1 2 2 2 0 PspA/IM30 family V_ATPase_I PF01496.19 gi|336476536|ref|YP_004615677.1| - 0.064 11.2 4.7 0.075 11.0 4.7 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family LXG PF04740.12 gi|336476536|ref|YP_004615677.1| - 0.16 11.6 12.5 0.65 9.7 12.5 1.9 1 1 0 1 1 1 0 LXG domain of WXG superfamily APG6_N PF17675.1 gi|336476536|ref|YP_004615677.1| - 1.3 9.5 15.2 1.5 9.4 0.4 2.4 1 1 0 2 2 2 0 Apg6 coiled-coil region Osmo_CC PF08946.10 gi|336476536|ref|YP_004615677.1| - 1.4 9.2 7.0 78 3.6 4.3 3.6 2 1 0 2 2 2 0 Osmosensory transporter coiled coil DUF1664 PF07889.12 gi|336476536|ref|YP_004615677.1| - 1.6 8.8 7.0 4.9 7.2 0.2 2.7 1 1 1 3 3 3 0 Protein of unknown function (DUF1664) Rho_Binding PF08912.11 gi|336476536|ref|YP_004615677.1| - 3.9 8.4 17.7 10 7.0 0.1 3.6 3 1 1 4 4 4 0 Rho Binding DUF4446 PF14584.6 gi|336476536|ref|YP_004615677.1| - 5.2 7.0 8.9 13 5.7 1.2 2.6 1 1 1 3 3 3 0 Protein of unknown function (DUF4446) DUF424 PF04242.13 gi|336476537|ref|YP_004615678.1| - 5e-30 103.6 0.1 5.7e-30 103.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MCM PF00493.23 gi|336476538|ref|YP_004615679.1| - 3.2e-89 297.8 0.0 7.1e-58 195.3 0.0 2.2 2 0 0 2 2 2 2 MCM P-loop domain MCM_OB PF17207.3 gi|336476538|ref|YP_004615679.1| - 5.4e-37 126.4 0.1 1e-36 125.6 0.1 1.5 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|336476538|ref|YP_004615679.1| - 8.6e-26 90.2 0.2 2e-25 89.0 0.2 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|336476538|ref|YP_004615679.1| - 1.2e-09 38.7 0.2 4e-09 37.0 0.2 1.9 1 0 0 1 1 1 1 MCM N-terminal domain AAA_5 PF07728.14 gi|336476538|ref|YP_004615679.1| - 0.0011 18.9 0.0 0.01 15.8 0.0 2.6 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|336476538|ref|YP_004615679.1| - 0.16 12.3 0.0 0.8 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain DUF4072 PF13284.6 gi|336476538|ref|YP_004615679.1| - 0.21 12.0 0.9 1.1 9.8 1.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4072) SpoU_methylase PF00588.19 gi|336476539|ref|YP_004615680.1| - 8.8e-33 113.5 0.1 1.1e-32 113.1 0.1 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family DapB_N PF01113.20 gi|336476539|ref|YP_004615680.1| - 0.0057 16.8 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Methyltrn_RNA_4 PF09936.9 gi|336476539|ref|YP_004615680.1| - 0.019 14.8 0.0 0.25 11.2 0.0 2.3 1 1 1 2 2 2 0 SAM-dependent RNA methyltransferase Fer4 PF00037.27 gi|336476540|ref|YP_004615681.1| - 3.4e-14 51.9 13.4 1.4e-08 34.2 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336476540|ref|YP_004615681.1| - 1.5e-12 47.9 23.9 2.3e-08 34.5 13.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476540|ref|YP_004615681.1| - 1.3e-11 43.8 12.3 5.8e-08 32.4 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336476540|ref|YP_004615681.1| - 4e-11 42.5 12.3 1.9e-06 27.7 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336476540|ref|YP_004615681.1| - 4.6e-10 39.4 12.4 1.1e-09 38.3 12.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476540|ref|YP_004615681.1| - 1.5e-09 37.8 7.9 1.9e-09 37.5 7.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476540|ref|YP_004615681.1| - 4.2e-09 36.4 24.5 9.4e-07 28.9 12.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476540|ref|YP_004615681.1| - 1.6e-08 34.4 13.7 6.1e-06 26.3 2.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|336476540|ref|YP_004615681.1| - 3.5e-06 27.6 9.1 6.3e-05 23.6 1.9 2.1 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|336476540|ref|YP_004615681.1| - 3e-05 24.4 14.9 0.00023 21.5 14.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336476540|ref|YP_004615681.1| - 0.00011 22.7 2.1 0.00011 22.7 2.1 2.3 1 1 1 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|336476540|ref|YP_004615681.1| - 0.00019 22.2 18.3 0.0013 19.5 5.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336476540|ref|YP_004615681.1| - 0.00043 20.8 14.5 0.012 16.1 4.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336476540|ref|YP_004615681.1| - 0.00056 20.7 9.3 0.051 14.4 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336476540|ref|YP_004615681.1| - 0.002 19.0 15.7 0.95 10.5 3.5 2.1 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_19 PF06902.11 gi|336476540|ref|YP_004615681.1| - 0.02 15.0 4.2 1.4 9.0 0.6 2.2 2 0 0 2 2 2 0 Divergent 4Fe-4S mono-cluster ETF_QO PF05187.13 gi|336476540|ref|YP_004615681.1| - 0.15 12.2 3.5 0.19 11.9 3.5 1.3 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|336476540|ref|YP_004615681.1| - 1.4 9.1 10.2 4.1 7.6 2.2 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain NIR_SIR PF01077.22 gi|336476541|ref|YP_004615682.1| - 1.1e-29 103.0 0.0 1.9e-29 102.2 0.0 1.4 2 0 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|336476541|ref|YP_004615682.1| - 3.6e-14 52.4 0.0 5.5e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Nitrate_red_gam PF02665.14 gi|336476542|ref|YP_004615683.1| - 2.6e-07 30.4 10.8 3.3e-05 23.6 2.6 2.6 2 1 0 2 2 2 2 Nitrate reductase gamma subunit CCG PF02754.16 gi|336476543|ref|YP_004615684.1| - 3.4e-31 107.3 1.5 1.1e-16 60.8 0.0 3.1 4 0 0 4 4 4 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|336476543|ref|YP_004615684.1| - 1.5e-10 41.3 6.6 2.2e-10 40.8 3.9 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336476543|ref|YP_004615684.1| - 1e-06 28.7 4.7 1e-06 28.7 4.7 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336476543|ref|YP_004615684.1| - 1.2e-06 28.9 10.4 1.5e-05 25.5 8.5 3.5 4 1 1 5 5 5 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476543|ref|YP_004615684.1| - 0.00027 21.0 15.0 0.0028 17.8 12.8 3.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336476543|ref|YP_004615684.1| - 0.0014 19.5 9.2 0.0088 17.0 9.2 2.5 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|336476543|ref|YP_004615684.1| - 0.0039 18.0 11.3 0.19 12.6 0.3 3.6 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476543|ref|YP_004615684.1| - 0.0078 16.8 11.5 0.0078 16.8 11.5 2.9 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476543|ref|YP_004615684.1| - 0.017 15.2 8.6 0.87 9.8 0.3 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|336476543|ref|YP_004615684.1| - 0.061 13.5 3.4 6.6 7.0 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|336476543|ref|YP_004615684.1| - 0.44 11.3 10.2 9.6 7.0 0.5 4.0 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|336476543|ref|YP_004615684.1| - 1.8 8.8 21.7 0.065 13.4 1.9 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4 PF00037.27 gi|336476543|ref|YP_004615684.1| - 3.5 7.6 18.9 0.86 9.5 2.5 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain DUF116 PF01976.17 gi|336476544|ref|YP_004615685.1| - 1.3e-43 148.2 10.0 1.5e-43 148.0 10.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 DUF116 PF01976.17 gi|336476545|ref|YP_004615686.1| - 8.1e-42 142.4 1.0 1e-41 142.0 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 PilX_N PF14341.6 gi|336476545|ref|YP_004615686.1| - 0.37 10.8 3.3 0.3 11.1 1.3 1.9 2 0 0 2 2 2 0 PilX N-terminal Dus PF01207.17 gi|336476546|ref|YP_004615687.1| - 3.6e-15 55.9 0.2 1.1e-14 54.3 0.2 1.6 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|336476546|ref|YP_004615687.1| - 1.2e-06 28.1 0.3 6.9e-06 25.7 0.1 2.0 1 1 1 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|336476546|ref|YP_004615687.1| - 7.8e-06 25.1 0.2 1.6e-05 24.1 0.2 1.4 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Fer4_14 PF13394.6 gi|336476546|ref|YP_004615687.1| - 0.039 14.1 0.0 0.079 13.1 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain NMO PF03060.15 gi|336476546|ref|YP_004615687.1| - 0.042 13.2 1.1 0.51 9.7 0.8 2.2 1 1 1 2 2 2 0 Nitronate monooxygenase Glu_synthase PF01645.17 gi|336476546|ref|YP_004615687.1| - 0.06 12.5 0.6 0.098 11.8 0.6 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase DegT_DnrJ_EryC1 PF01041.17 gi|336476546|ref|YP_004615687.1| - 0.086 12.1 0.2 0.13 11.5 0.2 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family VitD-bind_III PF09164.10 gi|336476546|ref|YP_004615687.1| - 0.089 12.8 0.0 0.63 10.1 0.0 2.3 2 0 0 2 2 2 0 Vitamin D binding protein, domain III CitG PF01874.16 gi|336476547|ref|YP_004615688.1| - 1.7e-74 251.0 0.0 2e-74 250.8 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|336476548|ref|YP_004615689.1| - 5.4e-46 156.6 0.0 6.2e-46 156.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) B12-binding PF02310.19 gi|336476549|ref|YP_004615690.1| - 4.9e-25 87.9 0.9 7.3e-25 87.3 0.9 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|336476549|ref|YP_004615690.1| - 1e-20 73.9 3.6 1.3e-20 73.6 1.2 2.2 2 0 0 2 2 2 1 B12 binding domain CRS1_YhbY PF01985.21 gi|336476549|ref|YP_004615690.1| - 0.07 13.3 0.1 0.57 10.4 0.1 2.5 2 0 0 2 2 2 0 CRS1 / YhbY (CRM) domain Peripla_BP_4 PF13407.6 gi|336476549|ref|YP_004615690.1| - 0.42 10.1 6.2 2.4 7.6 0.7 2.9 1 1 1 2 2 2 0 Periplasmic binding protein domain Dimeth_Pyl PF09505.10 gi|336476550|ref|YP_004615691.1| - 3.3e-269 893.0 9.6 3.7e-269 892.8 9.6 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) Antimicrobial_7 PF08102.11 gi|336476550|ref|YP_004615691.1| - 0.0079 16.4 0.0 0.017 15.4 0.0 1.5 1 0 0 1 1 1 1 Scorpion antimicrobial peptide Lamprin PF06403.11 gi|336476550|ref|YP_004615691.1| - 0.016 15.2 0.1 0.07 13.1 0.0 2.0 2 0 0 2 2 2 0 Lamprin WW_like PF17890.1 gi|336476550|ref|YP_004615691.1| - 0.41 10.7 1.5 7 6.8 0.1 3.1 3 0 0 3 3 3 0 Peptidoglycan hydrolase LytB WW-like domain Response_reg PF00072.24 gi|336476551|ref|YP_004615692.1| - 1.9e-23 82.7 0.1 2.2e-23 82.5 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|336476552|ref|YP_004615693.1| - 1.1e-22 80.3 0.2 1.3e-22 80.1 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain SAM_LFY PF01698.16 gi|336476552|ref|YP_004615693.1| - 0.044 13.7 0.1 0.071 13.1 0.1 1.3 1 0 0 1 1 1 0 Floricaula / Leafy protein SAM domain TrkA_C PF02080.21 gi|336476552|ref|YP_004615693.1| - 0.09 12.6 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 TrkA-C domain HisKA_2 PF07568.12 gi|336476553|ref|YP_004615694.1| - 9.4e-32 108.9 4.6 1.5e-31 108.3 2.3 2.6 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 gi|336476553|ref|YP_004615694.1| - 2.4e-22 79.9 3.4 2.4e-22 79.9 3.4 2.6 3 0 0 3 3 3 1 Cache domain PAS_3 PF08447.12 gi|336476553|ref|YP_004615694.1| - 2.1e-17 63.2 0.0 4.4e-17 62.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|336476553|ref|YP_004615694.1| - 1.7e-06 28.5 0.9 5.6e-06 26.8 0.9 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|336476553|ref|YP_004615694.1| - 8.5e-06 26.1 0.0 0.0025 18.1 0.0 2.7 2 0 0 2 2 2 1 HAMP domain Cache_3-Cache_2 PF17201.4 gi|336476553|ref|YP_004615694.1| - 4e-05 23.0 0.1 0.00022 20.6 0.0 2.2 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain PAS PF00989.25 gi|336476553|ref|YP_004615694.1| - 4.7e-05 23.3 0.1 0.00039 20.4 0.0 2.7 4 0 0 4 4 4 1 PAS fold HWE_HK PF07536.14 gi|336476553|ref|YP_004615694.1| - 0.00034 21.2 0.1 0.0011 19.6 0.1 1.9 1 0 0 1 1 1 1 HWE histidine kinase PAS_9 PF13426.7 gi|336476553|ref|YP_004615694.1| - 0.0023 18.1 0.1 0.011 16.0 0.1 2.2 1 0 0 1 1 1 1 PAS domain sCache_2 PF17200.4 gi|336476553|ref|YP_004615694.1| - 0.0045 16.8 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|336476553|ref|YP_004615694.1| - 0.013 14.7 0.0 0.013 14.7 0.0 2.3 3 0 0 3 3 3 0 Cache domain HATPase_c_2 PF13581.6 gi|336476553|ref|YP_004615694.1| - 0.028 14.4 0.0 0.065 13.2 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|336476553|ref|YP_004615694.1| - 0.037 14.3 0.0 0.083 13.2 0.0 1.6 1 0 0 1 1 1 0 PAS fold HATPase_c_3 PF13589.6 gi|336476553|ref|YP_004615694.1| - 0.085 12.7 0.3 0.29 10.9 0.3 1.9 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MOLO1 PF17175.4 gi|336476553|ref|YP_004615694.1| - 4.9 7.3 5.7 9.8 6.3 0.3 3.3 3 0 0 3 3 3 0 Modulator of levamisole receptor-1 dCMP_cyt_deam_1 PF00383.23 gi|336476554|ref|YP_004615695.1| - 1.7e-24 85.6 0.1 2.1e-24 85.3 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|336476554|ref|YP_004615695.1| - 1.4e-21 76.7 0.0 1.6e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase SNAD4 PF18750.1 gi|336476554|ref|YP_004615695.1| - 0.04 14.0 0.1 0.058 13.5 0.1 1.2 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC3 PF18771.1 gi|336476554|ref|YP_004615695.1| - 0.084 13.0 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 APOBEC3 Phage_X PF05155.15 gi|336476554|ref|YP_004615695.1| - 0.12 12.8 0.0 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 Phage X family NAD1 PF18778.1 gi|336476554|ref|YP_004615695.1| - 0.14 12.2 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Novel AID APOBEC clade 1 adh_short_C2 PF13561.6 gi|336476555|ref|YP_004615696.1| - 2.3e-65 220.4 0.1 2.7e-65 220.2 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336476555|ref|YP_004615696.1| - 1.7e-58 197.3 0.7 2e-58 197.1 0.7 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336476555|ref|YP_004615696.1| - 2.3e-15 57.0 0.0 3.3e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|336476555|ref|YP_004615696.1| - 5.6e-06 26.4 0.1 9.1e-06 25.7 0.1 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|336476555|ref|YP_004615696.1| - 6e-05 22.6 0.1 8.5e-05 22.1 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|336476555|ref|YP_004615696.1| - 0.0021 18.3 0.1 0.0081 16.4 0.1 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain DFP PF04127.15 gi|336476555|ref|YP_004615696.1| - 0.0023 17.8 0.1 0.006 16.4 0.1 1.7 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein 3Beta_HSD PF01073.19 gi|336476555|ref|YP_004615696.1| - 0.0048 15.9 0.1 0.0057 15.7 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Shikimate_DH PF01488.20 gi|336476555|ref|YP_004615696.1| - 0.0055 16.8 0.1 0.012 15.7 0.1 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|336476555|ref|YP_004615696.1| - 0.02 14.2 0.1 0.14 11.4 0.0 2.2 2 1 1 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox PF00070.27 gi|336476555|ref|YP_004615696.1| - 0.028 15.0 0.2 0.079 13.5 0.2 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ADH_zinc_N PF00107.26 gi|336476555|ref|YP_004615696.1| - 0.062 13.3 0.1 0.15 12.0 0.1 1.7 1 1 0 1 1 1 0 Zinc-binding dehydrogenase DUF1776 PF08643.10 gi|336476555|ref|YP_004615696.1| - 0.14 11.5 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) Glyco_trans_4_2 PF13477.6 gi|336476555|ref|YP_004615696.1| - 0.16 12.0 0.0 0.39 10.7 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like DUF2238 PF09997.9 gi|336476556|ref|YP_004615697.1| - 0.0027 17.5 1.8 0.0027 17.5 1.8 4.5 2 2 2 5 5 5 1 Predicted membrane protein (DUF2238) Glycophorin_A PF01102.18 gi|336476556|ref|YP_004615697.1| - 0.28 11.4 1.8 0.4 10.9 0.1 2.2 2 0 0 2 2 2 0 Glycophorin A Ion_trans PF00520.31 gi|336476557|ref|YP_004615698.1| - 2.7e-29 102.1 23.7 3.6e-29 101.7 23.7 1.1 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|336476557|ref|YP_004615698.1| - 3.4e-12 46.1 9.2 3.4e-12 46.1 9.2 2.4 2 1 0 2 2 2 1 Ion channel DUF4231 PF14015.6 gi|336476557|ref|YP_004615698.1| - 0.078 13.5 5.8 5.4 7.6 0.3 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4231) AIM24 PF01987.17 gi|336476558|ref|YP_004615699.1| - 2e-35 122.4 0.7 2.5e-35 122.1 0.7 1.1 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DUF378 PF04070.12 gi|336476559|ref|YP_004615700.1| - 2.1e-23 81.9 8.6 2.3e-23 81.8 8.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF378) FMN_red PF03358.15 gi|336476560|ref|YP_004615701.1| - 1.1e-27 96.6 0.0 1.5e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|336476560|ref|YP_004615701.1| - 1.7e-11 44.2 0.0 2.1e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|336476560|ref|YP_004615701.1| - 0.05 13.8 0.0 0.099 12.9 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain UB2H PF14814.6 gi|336476560|ref|YP_004615701.1| - 0.17 12.0 0.0 0.79 9.8 0.0 2.0 2 0 0 2 2 2 0 Bifunctional transglycosylase second domain Rubrerythrin PF02915.17 gi|336476561|ref|YP_004615702.1| - 0.00015 22.2 2.0 0.00019 21.8 2.0 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|336476561|ref|YP_004615702.1| - 0.00083 19.3 1.1 0.0014 18.6 1.1 1.5 1 1 0 1 1 1 1 Ferritin-like domain Coat_F PF07875.12 gi|336476561|ref|YP_004615702.1| - 0.001 19.2 0.1 0.0016 18.6 0.1 1.3 1 0 0 1 1 1 1 Coat F domain Swi5 PF07061.11 gi|336476561|ref|YP_004615702.1| - 0.0042 17.1 1.6 0.0052 16.9 1.6 1.2 1 0 0 1 1 1 1 Swi5 DUF2383 PF09537.10 gi|336476561|ref|YP_004615702.1| - 0.0061 16.9 0.1 0.0097 16.2 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) CENP-H PF05837.12 gi|336476561|ref|YP_004615702.1| - 0.024 15.0 1.1 0.025 15.0 1.1 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) DUF3450 PF11932.8 gi|336476561|ref|YP_004615702.1| - 0.026 13.8 0.9 0.032 13.5 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Aminotran_3 PF00202.21 gi|336476561|ref|YP_004615702.1| - 0.092 11.4 0.0 0.098 11.3 0.0 1.0 1 0 0 1 1 1 0 Aminotransferase class-III V-set PF07686.17 gi|336476561|ref|YP_004615702.1| - 0.15 12.2 0.1 1.7 8.9 0.0 2.0 1 1 1 2 2 2 0 Immunoglobulin V-set domain NTP_transf_9 PF04248.12 gi|336476562|ref|YP_004615703.1| - 1.6e-17 63.2 0.6 1.8e-17 63.0 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF427) EamA PF00892.20 gi|336476563|ref|YP_004615704.1| - 3.4e-15 56.4 46.9 1.3e-08 35.1 19.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family DUF2177 PF09945.9 gi|336476563|ref|YP_004615704.1| - 0.034 14.2 0.6 0.034 14.2 0.6 3.0 2 1 1 3 3 3 0 Predicted membrane protein (DUF2177) TMEM234 PF10639.9 gi|336476563|ref|YP_004615704.1| - 0.088 12.9 10.7 0.13 12.3 0.9 2.9 2 1 1 3 3 3 0 Putative transmembrane family 234 Internalin_N PF12354.8 gi|336476563|ref|YP_004615704.1| - 0.85 9.7 0.0 0.85 9.7 0.0 3.0 3 1 0 3 3 3 0 Bacterial adhesion/invasion protein N terminal URO-D PF01208.17 gi|336476564|ref|YP_004615705.1| - 2.1e-76 257.3 0.0 2.4e-76 257.2 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Flu_B_M2 PF04772.12 gi|336476564|ref|YP_004615705.1| - 0.18 12.0 0.0 0.45 10.8 0.0 1.6 1 0 0 1 1 1 0 Influenza B matrix protein 2 (BM2) MreB_Mbl PF06723.13 gi|336476565|ref|YP_004615706.1| - 9.2e-09 34.6 0.1 1.1e-06 27.8 0.2 2.8 2 1 0 2 2 2 2 MreB/Mbl protein FtsA PF14450.6 gi|336476565|ref|YP_004615706.1| - 4e-05 24.0 0.6 0.00013 22.3 0.3 2.0 2 0 0 2 2 2 1 Cell division protein FtsA AlaE PF06610.13 gi|336476566|ref|YP_004615707.1| - 0.026 14.5 0.9 0.031 14.3 0.1 1.5 2 0 0 2 2 2 0 L-alanine exporter Fez1 PF06818.15 gi|336476566|ref|YP_004615707.1| - 0.13 12.6 6.8 0.18 12.3 6.8 1.1 1 0 0 1 1 1 0 Fez1 DYW_deaminase PF14432.6 gi|336476566|ref|YP_004615707.1| - 0.21 11.5 1.6 0.27 11.1 0.8 1.5 1 1 0 1 1 1 0 DYW family of nucleic acid deaminases DUF423 PF04241.15 gi|336476566|ref|YP_004615707.1| - 0.79 10.0 2.9 1.1 9.5 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF423) DUF872 PF05915.12 gi|336476566|ref|YP_004615707.1| - 1.4 9.1 5.2 1.4 9.1 3.4 2.0 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF2583 PF10762.9 gi|336476566|ref|YP_004615707.1| - 2.3 8.7 8.2 16 6.0 2.5 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF2583) Cation_ATPase_C PF00689.21 gi|336476566|ref|YP_004615707.1| - 2.4 7.8 9.6 3.8 7.2 9.6 1.3 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus OTCace PF00185.24 gi|336476567|ref|YP_004615708.1| - 3.8e-59 199.3 0.0 5.6e-59 198.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|336476567|ref|YP_004615708.1| - 1.5e-55 187.3 0.2 2.7e-55 186.4 0.2 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TOC159_MAD PF11886.8 gi|336476567|ref|YP_004615708.1| - 0.09 11.7 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Translocase of chloroplast 159/132, membrane anchor domain GARS_A PF01071.19 gi|336476568|ref|YP_004615709.1| - 5.7e-57 192.6 0.0 1.3e-56 191.4 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|336476568|ref|YP_004615709.1| - 1.2e-27 96.5 0.1 6.5e-27 94.2 0.1 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|336476568|ref|YP_004615709.1| - 8.2e-15 54.9 0.3 2.1e-14 53.5 0.3 1.8 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|336476568|ref|YP_004615709.1| - 0.007 16.4 0.0 0.019 15.0 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|336476568|ref|YP_004615709.1| - 0.012 14.9 0.0 0.076 12.2 0.0 2.0 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp GFO_IDH_MocA PF01408.22 gi|336476568|ref|YP_004615709.1| - 0.015 16.1 0.0 0.17 12.7 0.0 2.5 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_4 PF13535.6 gi|336476568|ref|YP_004615709.1| - 0.021 14.4 0.0 0.046 13.3 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain VWA PF00092.28 gi|336476568|ref|YP_004615709.1| - 0.08 13.2 0.1 2.1 8.6 0.0 2.9 4 0 0 4 4 4 0 von Willebrand factor type A domain Pribosyltran PF00156.27 gi|336476569|ref|YP_004615710.1| - 1.1e-14 54.2 2.6 1.6e-14 53.7 2.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|336476569|ref|YP_004615710.1| - 0.018 14.5 0.1 0.027 13.9 0.1 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase CarS-like PF01864.17 gi|336476570|ref|YP_004615711.1| - 4.6e-53 179.8 7.2 5.4e-53 179.6 7.2 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|336476570|ref|YP_004615711.1| - 8.1e-07 29.1 0.5 8.1e-07 29.1 0.5 2.2 1 1 1 2 2 2 1 Cytidylyltransferase family CcmF_C PF16327.5 gi|336476571|ref|YP_004615712.1| - 9.9e-16 57.9 4.2 1.4e-15 57.4 4.2 1.1 1 0 0 1 1 1 1 Cytochrome c-type biogenesis protein CcmF C-terminal ResB PF05140.14 gi|336476571|ref|YP_004615712.1| - 2.1e-05 23.5 1.4 0.011 14.6 0.1 2.1 1 1 1 2 2 2 2 ResB-like family PRD1_DD PF11087.8 gi|336476571|ref|YP_004615712.1| - 0.028 14.1 1.8 0.067 12.9 1.2 2.0 1 1 0 1 1 1 0 PRD1 phage membrane DNA delivery Cytochrom_C_asm PF01578.20 gi|336476572|ref|YP_004615713.1| - 2.7e-33 115.5 25.5 2.7e-33 115.5 25.5 2.5 2 2 0 2 2 2 1 Cytochrome C assembly protein Holin_BlyA PF05102.12 gi|336476572|ref|YP_004615713.1| - 1.4 8.9 4.6 11 6.0 0.7 2.7 2 1 0 2 2 2 0 holin, BlyA family HTH_32 PF13565.6 gi|336476573|ref|YP_004615714.1| - 4.2e-11 43.3 0.1 6.1e-11 42.8 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|336476573|ref|YP_004615714.1| - 8.6e-09 35.3 0.0 1.3e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|336476573|ref|YP_004615714.1| - 1.1e-07 31.5 0.0 2e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|336476573|ref|YP_004615714.1| - 1.5e-06 28.2 0.1 4.8e-06 26.6 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_33 PF13592.6 gi|336476573|ref|YP_004615714.1| - 9.6e-06 25.2 1.5 8.4e-05 22.1 0.0 2.8 4 0 0 4 4 4 1 Winged helix-turn helix LZ_Tnp_IS481 PF13011.6 gi|336476573|ref|YP_004615714.1| - 0.0026 18.2 0.0 0.0036 17.8 0.0 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_7 PF02796.15 gi|336476573|ref|YP_004615714.1| - 0.033 14.3 0.1 6.1 7.0 0.1 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase B12-binding_2 PF02607.17 gi|336476574|ref|YP_004615715.1| - 3.4e-20 72.3 0.2 8e-20 71.1 0.2 1.7 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.19 gi|336476574|ref|YP_004615715.1| - 4.9e-17 62.1 0.5 7.8e-17 61.4 0.5 1.3 1 0 0 1 1 1 1 B12 binding domain Ssl1 PF04056.14 gi|336476574|ref|YP_004615715.1| - 0.032 14.0 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 Ssl1-like DUF5633 PF18656.1 gi|336476574|ref|YP_004615715.1| - 1.1 9.2 4.3 4.2 7.3 3.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5633) MtmB PF05369.12 gi|336476575|ref|YP_004615716.1| - 3.8e-227 754.4 1.5 4.3e-227 754.2 1.5 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB Lyase_1 PF00206.20 gi|336476576|ref|YP_004615717.1| - 2.3e-53 181.6 0.4 4.2e-53 180.8 0.4 1.3 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|336476576|ref|YP_004615717.1| - 6.4e-19 68.3 0.7 1.9e-18 66.8 0.1 2.1 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C2 PF14698.6 gi|336476576|ref|YP_004615717.1| - 0.018 15.8 0.3 0.21 12.3 0.1 2.9 4 0 0 4 4 4 0 Argininosuccinate lyase C-terminal ASL_C PF08328.11 gi|336476576|ref|YP_004615717.1| - 0.024 14.8 0.0 0.077 13.1 0.0 1.9 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal Ribosomal_S13 PF00416.22 gi|336476576|ref|YP_004615717.1| - 0.097 13.1 0.7 7.9 6.9 0.1 2.7 2 0 0 2 2 2 0 Ribosomal protein S13/S18 FumaraseC_C PF10415.9 gi|336476576|ref|YP_004615717.1| - 0.12 12.8 0.0 0.66 10.4 0.0 2.3 1 0 0 1 1 1 0 Fumarase C C-terminus Integrase_Zn PF02022.19 gi|336476576|ref|YP_004615717.1| - 0.14 12.1 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 Integrase Zinc binding domain UvrA_inter PF17760.1 gi|336476577|ref|YP_004615718.1| - 8e-38 128.9 0.9 1.9e-37 127.7 0.9 1.7 1 0 0 1 1 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|336476577|ref|YP_004615718.1| - 2.3e-36 124.5 0.1 1e-34 119.2 0.1 2.7 2 0 0 2 2 2 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|336476577|ref|YP_004615718.1| - 2.3e-21 76.8 0.4 2.9e-10 40.8 0.1 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|336476577|ref|YP_004615718.1| - 2.9e-13 49.8 0.2 0.0048 16.4 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|336476577|ref|YP_004615718.1| - 1.6e-07 31.9 0.0 0.029 14.7 0.0 3.2 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 gi|336476577|ref|YP_004615718.1| - 1.8e-07 30.8 0.2 0.005 16.6 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|336476577|ref|YP_004615718.1| - 1.4e-06 28.3 0.6 0.028 14.3 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 gi|336476577|ref|YP_004615718.1| - 2e-06 28.1 0.3 0.029 14.7 0.0 3.4 4 0 0 4 4 3 2 AAA domain AAA_23 PF13476.6 gi|336476577|ref|YP_004615718.1| - 3.8e-06 27.6 2.3 0.052 14.0 0.2 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|336476577|ref|YP_004615718.1| - 2.1e-05 25.1 0.1 0.12 13.0 0.1 3.0 3 0 0 3 3 2 2 AAA domain AAA_24 PF13479.6 gi|336476577|ref|YP_004615718.1| - 3.6e-05 23.6 0.4 0.04 13.6 0.0 3.6 3 0 0 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|336476577|ref|YP_004615718.1| - 7.6e-05 22.8 0.2 2.5 8.1 0.1 3.6 3 0 0 3 3 3 1 AAA domain APS_kinase PF01583.20 gi|336476577|ref|YP_004615718.1| - 0.0001 22.2 0.2 0.41 10.5 0.1 2.6 2 0 0 2 2 2 2 Adenylylsulphate kinase DnaJ_CXXCXGXG PF00684.19 gi|336476577|ref|YP_004615718.1| - 0.00014 22.2 8.8 0.15 12.4 0.2 3.7 4 0 0 4 4 3 2 DnaJ central domain T2SSE PF00437.20 gi|336476577|ref|YP_004615718.1| - 0.00019 20.6 1.1 0.54 9.3 0.1 3.0 3 0 0 3 3 3 2 Type II/IV secretion system protein AAA_33 PF13671.6 gi|336476577|ref|YP_004615718.1| - 0.00086 19.5 0.2 1.6 8.9 0.1 2.9 3 0 0 3 3 2 1 AAA domain Viral_helicase1 PF01443.18 gi|336476577|ref|YP_004615718.1| - 0.0013 18.6 0.2 0.048 13.4 0.3 2.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|336476577|ref|YP_004615718.1| - 0.0015 17.9 0.0 0.84 8.8 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|336476577|ref|YP_004615718.1| - 0.0019 17.8 0.0 0.54 9.8 0.0 2.7 3 0 0 3 3 2 1 AAA domain TF_Zn_Ribbon PF08271.12 gi|336476577|ref|YP_004615718.1| - 0.0031 17.0 0.9 0.064 12.8 0.1 2.9 2 0 0 2 2 2 1 TFIIB zinc-binding ATPase_2 PF01637.18 gi|336476577|ref|YP_004615718.1| - 0.0031 17.5 0.2 2.3 8.1 0.0 2.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_21 PF13304.6 gi|336476577|ref|YP_004615718.1| - 0.0036 17.2 9.0 0.11 12.3 0.0 4.1 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system NB-ARC PF00931.22 gi|336476577|ref|YP_004615718.1| - 0.0051 16.0 0.1 0.55 9.4 0.0 3.1 3 0 0 3 3 3 1 NB-ARC domain cobW PF02492.19 gi|336476577|ref|YP_004615718.1| - 0.0056 16.3 1.4 0.34 10.5 0.4 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|336476577|ref|YP_004615718.1| - 0.0082 16.1 0.2 1.7 8.5 0.1 2.6 2 0 0 2 2 2 1 NACHT domain PRK PF00485.18 gi|336476577|ref|YP_004615718.1| - 0.0083 15.9 0.3 0.83 9.4 0.1 2.6 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family ATPase PF06745.13 gi|336476577|ref|YP_004615718.1| - 0.0093 15.3 0.1 4.6 6.5 0.0 2.5 2 0 0 2 2 2 0 KaiC MMR_HSR1 PF01926.23 gi|336476577|ref|YP_004615718.1| - 0.014 15.5 1.1 1.2 9.3 0.1 3.2 3 0 0 3 3 3 0 50S ribosome-binding GTPase MeaB PF03308.16 gi|336476577|ref|YP_004615718.1| - 0.014 14.4 0.0 0.25 10.3 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_7 PF12775.7 gi|336476577|ref|YP_004615718.1| - 0.024 14.1 0.2 4.5 6.7 0.1 2.9 3 0 0 3 3 3 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|336476577|ref|YP_004615718.1| - 0.027 13.8 0.0 7.4 5.8 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin AAA_30 PF13604.6 gi|336476577|ref|YP_004615718.1| - 0.031 14.0 0.1 4.9 6.8 0.1 3.0 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|336476577|ref|YP_004615718.1| - 0.034 14.1 2.2 0.35 10.8 0.1 3.0 3 0 0 3 3 2 0 NTPase AAA_15 PF13175.6 gi|336476577|ref|YP_004615718.1| - 0.044 13.5 9.6 3.4 7.3 0.0 4.4 5 0 0 5 5 4 0 AAA ATPase domain Herpes_Helicase PF02689.14 gi|336476577|ref|YP_004615718.1| - 0.048 11.6 0.0 0.23 9.4 0.0 1.9 2 0 0 2 2 2 0 Helicase BCA_ABC_TP_C PF12399.8 gi|336476577|ref|YP_004615718.1| - 0.057 13.4 3.3 3.3 7.7 0.2 2.5 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter RNA_helicase PF00910.22 gi|336476577|ref|YP_004615718.1| - 0.069 13.6 0.2 4.4 7.7 0.1 2.5 2 0 0 2 2 2 0 RNA helicase DUF5300 PF17224.3 gi|336476577|ref|YP_004615718.1| - 0.072 13.4 0.7 2.4 8.5 0.2 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF5300) dNK PF01712.19 gi|336476577|ref|YP_004615718.1| - 0.079 12.8 0.1 0.81 9.5 0.0 2.2 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA_28 PF13521.6 gi|336476577|ref|YP_004615718.1| - 0.082 13.1 0.5 4.9 7.4 0.2 2.4 2 0 0 2 2 2 0 AAA domain ThiI PF02568.14 gi|336476577|ref|YP_004615718.1| - 0.12 11.9 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) RNA12 PF10443.9 gi|336476577|ref|YP_004615718.1| - 0.17 10.6 0.0 9.3 4.8 0.0 2.1 2 0 0 2 2 2 0 RNA12 protein Zn-ribbon_8 PF09723.10 gi|336476577|ref|YP_004615718.1| - 0.43 10.7 12.1 0.37 10.9 1.2 4.1 4 0 0 4 4 4 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|336476577|ref|YP_004615718.1| - 0.45 10.0 5.6 6.4 6.3 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|336476577|ref|YP_004615718.1| - 1.5 8.7 0.0 1.5 8.7 0.0 2.8 4 0 0 4 4 3 0 RNA polymerases M/15 Kd subunit Cytochrome_C7 PF14522.6 gi|336476577|ref|YP_004615718.1| - 3.2 7.8 4.6 37 4.4 0.1 3.3 3 1 0 3 3 3 0 Cytochrome c7 and related cytochrome c TatD_DNase PF01026.21 gi|336476578|ref|YP_004615719.1| - 1.2e-26 93.6 0.0 1.5e-26 93.4 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|336476578|ref|YP_004615719.1| - 0.044 13.1 0.0 0.093 12.0 0.0 1.5 1 0 0 1 1 1 0 Amidohydrolase family Amidohydro_2 PF04909.14 gi|336476578|ref|YP_004615719.1| - 0.12 12.1 0.0 0.26 11.1 0.0 1.7 1 1 0 1 1 1 0 Amidohydrolase Iso_dh PF00180.20 gi|336476579|ref|YP_004615720.1| - 2.2e-86 290.2 0.0 2.5e-86 290.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase HMGL-like PF00682.19 gi|336476580|ref|YP_004615721.1| - 2e-35 122.6 0.0 2.8e-35 122.2 0.0 1.2 1 0 0 1 1 1 1 HMGL-like ACT PF01842.25 gi|336476581|ref|YP_004615722.1| - 0.00012 21.8 0.0 0.00026 20.7 0.0 1.6 1 0 0 1 1 1 1 ACT domain Response_reg PF00072.24 gi|336476582|ref|YP_004615723.1| - 2.3e-23 82.5 1.0 3.2e-23 82.0 0.3 1.6 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.7 gi|336476582|ref|YP_004615723.1| - 1.7e-09 37.8 0.2 3.2e-09 37.0 0.2 1.4 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|336476582|ref|YP_004615723.1| - 9.6e-09 35.5 0.0 1.4e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|336476582|ref|YP_004615723.1| - 2.2e-08 34.1 0.0 4.9e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|336476582|ref|YP_004615723.1| - 0.0027 17.7 0.0 0.0069 16.4 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|336476583|ref|YP_004615724.1| - 7e-42 141.6 3.7 4.7e-17 62.0 0.3 4.5 4 0 0 4 4 4 4 PAS fold HisKA_2 PF07568.12 gi|336476583|ref|YP_004615724.1| - 5.7e-31 106.4 3.3 5.7e-31 106.4 3.3 2.9 4 0 0 4 4 3 1 Histidine kinase PAS PF00989.25 gi|336476583|ref|YP_004615724.1| - 4.9e-25 87.7 1.7 1.5e-10 41.1 0.1 4.5 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|336476583|ref|YP_004615724.1| - 1.1e-17 64.2 11.6 7.6e-08 32.5 0.5 4.3 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.10 gi|336476583|ref|YP_004615724.1| - 2.1e-11 44.0 0.0 0.00069 19.8 0.0 3.5 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|336476583|ref|YP_004615724.1| - 8e-09 36.0 0.0 3e-08 34.1 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|336476583|ref|YP_004615724.1| - 8.2e-08 32.1 0.0 5.2e-05 23.2 0.0 3.3 3 0 0 3 3 3 1 PAS domain GAF PF01590.26 gi|336476583|ref|YP_004615724.1| - 1.1e-07 32.5 0.0 2e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|336476583|ref|YP_004615724.1| - 1.4e-06 28.7 0.0 2.5e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 GAF domain HWE_HK PF07536.14 gi|336476583|ref|YP_004615724.1| - 3.3e-06 27.7 0.7 3.3e-06 27.7 0.7 2.1 2 0 0 2 2 1 1 HWE histidine kinase PAS_11 PF14598.6 gi|336476583|ref|YP_004615724.1| - 0.00055 20.0 1.6 0.19 11.9 0.1 3.5 3 0 0 3 3 3 1 PAS domain GAF_2 PF13185.6 gi|336476583|ref|YP_004615724.1| - 0.018 15.3 0.0 0.032 14.5 0.0 1.4 1 0 0 1 1 1 0 GAF domain SPOB_a PF14689.6 gi|336476583|ref|YP_004615724.1| - 0.088 12.5 0.5 0.31 10.8 0.5 2.0 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain VWA PF00092.28 gi|336476584|ref|YP_004615725.1| - 6.6e-06 26.5 0.4 0.001 19.3 0.1 2.5 2 0 0 2 2 2 2 von Willebrand factor type A domain GATase1_like PF07090.11 gi|336476584|ref|YP_004615725.1| - 0.0001 21.8 1.7 0.21 11.0 0.0 2.8 3 0 0 3 3 3 2 Putative glutamine amidotransferase DUF4350 PF14258.6 gi|336476584|ref|YP_004615725.1| - 0.068 13.6 0.2 3.2 8.3 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) BatA PF07584.11 gi|336476584|ref|YP_004615725.1| - 5.1 7.5 7.7 12 6.3 0.9 2.8 2 1 1 3 3 3 0 Aerotolerance regulator N-terminal BatA PF07584.11 gi|336476585|ref|YP_004615726.1| - 6.6e-16 58.4 7.9 6.6e-16 58.4 7.9 2.2 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal ABC_transp_aux PF09822.9 gi|336476585|ref|YP_004615726.1| - 0.00054 19.5 0.0 0.001 18.6 0.0 1.5 1 1 0 1 1 1 1 ABC-type uncharacterized transport system OppC_N PF12911.7 gi|336476585|ref|YP_004615726.1| - 0.002 18.0 2.9 0.004 17.1 0.0 2.5 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C VWA_2 PF13519.6 gi|336476585|ref|YP_004615726.1| - 0.05 14.3 0.8 0.16 12.7 0.8 1.9 1 1 0 1 1 1 0 von Willebrand factor type A domain MFS_1 PF07690.16 gi|336476585|ref|YP_004615726.1| - 0.17 10.8 1.2 0.28 10.1 1.2 1.2 1 0 0 1 1 1 0 Major Facilitator Superfamily DUF58 PF01882.18 gi|336476586|ref|YP_004615727.1| - 6.7e-21 74.4 0.0 1.6e-20 73.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|336476586|ref|YP_004615727.1| - 1.7e-09 38.3 0.3 3.6e-09 37.2 0.3 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|336476586|ref|YP_004615727.1| - 7.4e-07 28.8 0.0 1.3e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein AAA_3 PF07726.11 gi|336476587|ref|YP_004615728.1| - 2.8e-61 205.2 0.1 4.2e-61 204.6 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|336476587|ref|YP_004615728.1| - 9.1e-19 67.1 0.1 1.5e-18 66.4 0.1 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|336476587|ref|YP_004615728.1| - 2.7e-11 43.6 0.0 6.4e-11 42.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|336476587|ref|YP_004615728.1| - 2.4e-05 24.8 0.0 7.6e-05 23.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|336476587|ref|YP_004615728.1| - 0.0024 17.0 0.0 0.0041 16.2 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|336476587|ref|YP_004615728.1| - 0.003 17.3 0.1 0.021 14.6 0.1 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|336476587|ref|YP_004615728.1| - 0.013 15.2 0.0 0.79 9.4 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Rep_fac-A_C PF08646.10 gi|336476587|ref|YP_004615728.1| - 0.051 13.3 0.0 11 5.7 0.0 2.2 2 0 0 2 2 2 0 Replication factor-A C terminal domain AAA_19 PF13245.6 gi|336476587|ref|YP_004615728.1| - 0.068 13.5 0.0 1.8 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|336476587|ref|YP_004615728.1| - 0.076 12.4 0.1 0.43 9.9 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF2663 PF10864.8 gi|336476588|ref|YP_004615729.1| - 0.35 11.3 3.9 36 4.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2663) PDT PF00800.18 gi|336476589|ref|YP_004615730.1| - 5.9e-59 199.0 0.1 7.7e-59 198.6 0.1 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|336476589|ref|YP_004615730.1| - 8.1e-10 38.3 0.1 5.2e-09 35.7 0.0 2.2 2 0 0 2 2 2 1 ACT domain DUF3834 PF12916.7 gi|336476589|ref|YP_004615730.1| - 0.028 13.7 0.0 0.05 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) E1-E2_ATPase PF00122.20 gi|336476590|ref|YP_004615731.1| - 4e-55 186.1 8.3 2.8e-54 183.4 0.5 3.5 3 0 0 3 3 3 2 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|336476590|ref|YP_004615731.1| - 1.9e-39 135.2 9.1 1.9e-39 135.2 9.1 2.2 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|336476590|ref|YP_004615731.1| - 4.3e-24 86.0 0.1 1.3e-23 84.4 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|336476590|ref|YP_004615731.1| - 8.8e-19 67.0 0.0 3.4e-18 65.1 0.0 2.0 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|336476590|ref|YP_004615731.1| - 5.8e-13 48.7 0.0 1.4e-12 47.5 0.0 1.7 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|336476590|ref|YP_004615731.1| - 6.5e-08 32.6 3.0 0.00061 19.6 0.8 2.5 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336476590|ref|YP_004615731.1| - 2.6e-05 24.7 0.0 5.1e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.21 gi|336476590|ref|YP_004615731.1| - 0.044 14.2 0.0 0.43 10.9 0.0 2.4 2 1 1 3 3 3 0 Radical SAM superfamily Methyltransf_11 PF08241.12 gi|336476591|ref|YP_004615732.1| - 8.1e-17 61.7 0.0 1.3e-16 61.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336476591|ref|YP_004615732.1| - 5.7e-16 59.0 0.0 9.8e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336476591|ref|YP_004615732.1| - 1.2e-15 57.6 0.0 1.7e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336476591|ref|YP_004615732.1| - 2.4e-13 50.3 0.0 3e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336476591|ref|YP_004615732.1| - 2.9e-10 39.9 0.0 4.8e-10 39.2 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|336476591|ref|YP_004615732.1| - 9.3e-08 32.7 0.0 1.4e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|336476591|ref|YP_004615732.1| - 4.9e-06 26.5 0.0 8.4e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.18 gi|336476591|ref|YP_004615732.1| - 3.3e-05 23.3 0.0 6.4e-05 22.3 0.0 1.5 1 1 0 1 1 1 1 O-methyltransferase domain GCD14 PF08704.10 gi|336476591|ref|YP_004615732.1| - 0.00017 21.3 0.0 0.00022 21.0 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_9 PF08003.11 gi|336476591|ref|YP_004615732.1| - 0.00032 19.7 0.0 0.00038 19.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) CMAS PF02353.20 gi|336476591|ref|YP_004615732.1| - 0.0012 18.2 0.0 0.0021 17.4 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.17 gi|336476591|ref|YP_004615732.1| - 0.0021 17.2 0.0 0.0035 16.5 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin CM1 PF03026.15 gi|336476591|ref|YP_004615732.1| - 0.0039 16.6 0.0 0.0058 16.0 0.0 1.2 1 0 0 1 1 1 1 Influenza C virus M1 protein Methyltransf_4 PF02390.17 gi|336476591|ref|YP_004615732.1| - 0.0066 15.9 0.0 0.025 14.1 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_32 PF13679.6 gi|336476591|ref|YP_004615732.1| - 0.023 14.7 0.0 0.031 14.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Caps_synth_GfcC PF06251.11 gi|336476591|ref|YP_004615732.1| - 0.028 14.0 0.0 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 Capsule biosynthesis GfcC Methyltransf_3 PF01596.17 gi|336476591|ref|YP_004615732.1| - 0.03 13.5 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase MetW PF07021.12 gi|336476591|ref|YP_004615732.1| - 0.065 12.8 0.0 0.09 12.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.14 gi|336476591|ref|YP_004615732.1| - 0.17 11.5 0.0 0.46 10.0 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain PrmA PF06325.13 gi|336476591|ref|YP_004615732.1| - 0.18 11.2 0.0 0.3 10.4 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) ETRAMP PF09716.10 gi|336476593|ref|YP_004615734.1| - 0.17 12.0 0.2 0.15 12.2 0.2 1.3 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Molydop_binding PF01568.21 gi|336476595|ref|YP_004615736.1| - 6.4e-11 42.3 0.0 7.8e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF4897 PF16238.5 gi|336476595|ref|YP_004615736.1| - 0.031 14.1 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) Molybdopterin PF00384.22 gi|336476596|ref|YP_004615737.1| - 1.1e-05 24.7 0.1 0.081 11.9 0.0 2.5 2 1 0 2 2 2 2 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|336476596|ref|YP_004615737.1| - 0.0017 18.1 0.4 1.9 8.2 0.1 2.7 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain FeS PF04060.13 gi|336476597|ref|YP_004615738.1| - 7.5e-14 51.1 0.6 7.5e-14 51.1 0.6 2.5 2 0 0 2 2 2 1 Putative Fe-S cluster Fer4 PF00037.27 gi|336476597|ref|YP_004615738.1| - 5.4e-10 38.7 21.1 4.2e-08 32.7 3.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336476597|ref|YP_004615738.1| - 3.5e-07 30.0 22.0 1e-05 25.4 3.5 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336476597|ref|YP_004615738.1| - 4.1e-07 30.0 14.0 5.9e-06 26.3 9.8 2.9 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476597|ref|YP_004615738.1| - 1.2e-06 28.9 17.8 0.0019 18.8 10.9 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476597|ref|YP_004615738.1| - 7.4e-06 26.0 27.3 4.8e-05 23.4 9.0 2.9 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476597|ref|YP_004615738.1| - 1.5e-05 25.1 14.4 0.00021 21.3 1.3 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476597|ref|YP_004615738.1| - 3.8e-05 23.5 3.5 3.8e-05 23.5 3.5 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|336476597|ref|YP_004615738.1| - 0.00013 22.3 24.7 0.0007 20.0 6.5 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336476597|ref|YP_004615738.1| - 0.00016 22.1 13.0 0.0003 21.3 6.9 2.9 2 1 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|336476597|ref|YP_004615738.1| - 0.00027 21.2 20.0 0.00059 20.1 3.0 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|336476597|ref|YP_004615738.1| - 0.0013 19.5 0.1 0.0013 19.5 0.1 2.8 3 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|336476597|ref|YP_004615738.1| - 0.0017 19.1 22.6 0.016 16.1 8.0 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336476597|ref|YP_004615738.1| - 0.0022 18.9 20.6 0.025 15.5 3.3 3.1 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain YhfH PF14149.6 gi|336476597|ref|YP_004615738.1| - 0.0022 17.9 1.9 0.0022 17.9 1.9 2.6 2 0 0 2 2 2 1 YhfH-like protein Fer4_17 PF13534.6 gi|336476597|ref|YP_004615738.1| - 0.014 15.9 7.0 0.014 15.9 7.0 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain FeThRed_B PF02943.15 gi|336476598|ref|YP_004615739.1| - 2e-28 98.5 2.2 2.2e-28 98.4 2.2 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Nup54 PF13874.6 gi|336476598|ref|YP_004615739.1| - 0.12 12.5 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 FlpD PF02662.16 gi|336476599|ref|YP_004615740.1| - 1.6e-53 179.9 5.5 6.6e-50 168.2 0.1 4.5 4 1 0 4 4 4 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.14 gi|336476599|ref|YP_004615740.1| - 1.3e-12 47.6 0.1 3.1e-07 29.9 0.1 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|336476599|ref|YP_004615740.1| - 1.6e-12 47.8 32.3 7.7e-06 26.4 11.4 5.4 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336476599|ref|YP_004615740.1| - 2.1e-11 43.1 55.7 3.4e-07 29.8 3.1 6.0 6 1 0 6 6 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336476599|ref|YP_004615740.1| - 7.6e-11 42.0 43.7 3.1e-05 24.0 13.4 5.5 5 1 1 6 6 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336476599|ref|YP_004615740.1| - 1.4e-09 38.7 23.5 0.0039 18.1 3.4 5.0 4 0 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|336476599|ref|YP_004615740.1| - 1.6e-09 37.4 53.3 3.3e-05 23.8 2.5 5.6 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336476599|ref|YP_004615740.1| - 2.5e-09 37.1 34.8 0.00015 21.8 0.2 5.3 4 1 1 5 5 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476599|ref|YP_004615740.1| - 3.6e-07 30.2 39.2 3e-05 24.1 10.8 5.1 5 1 0 5 5 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476599|ref|YP_004615740.1| - 2.1e-06 27.5 50.6 0.00048 20.1 1.9 6.0 6 0 0 6 6 5 4 4Fe-4S binding domain FAD_oxidored PF12831.7 gi|336476599|ref|YP_004615740.1| - 2.3e-06 27.3 0.0 3.8e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|336476599|ref|YP_004615740.1| - 3.6e-06 27.4 1.2 6.1e-05 23.5 0.2 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|336476599|ref|YP_004615740.1| - 4.1e-06 26.1 0.2 9.6e-05 21.6 0.0 2.8 3 0 0 3 3 3 1 Glucose inhibited division protein A DAO PF01266.24 gi|336476599|ref|YP_004615740.1| - 1.1e-05 25.2 0.1 0.0025 17.4 0.2 2.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|336476599|ref|YP_004615740.1| - 1.2e-05 24.7 0.1 2.3e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|336476599|ref|YP_004615740.1| - 3e-05 24.1 0.0 0.00014 22.0 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|336476599|ref|YP_004615740.1| - 0.00019 20.8 0.0 0.00049 19.5 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_4 PF12800.7 gi|336476599|ref|YP_004615740.1| - 0.00033 20.9 34.3 0.11 13.1 2.8 5.3 4 0 0 4 4 4 3 4Fe-4S binding domain HI0933_like PF03486.14 gi|336476599|ref|YP_004615740.1| - 0.00035 19.4 0.1 0.00058 18.7 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|336476599|ref|YP_004615740.1| - 0.0015 17.8 0.0 0.0044 16.3 0.0 1.7 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|336476599|ref|YP_004615740.1| - 0.0036 16.6 0.2 0.0073 15.6 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain K_oxygenase PF13434.6 gi|336476599|ref|YP_004615740.1| - 0.0054 15.9 0.1 0.57 9.3 0.0 2.7 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|336476599|ref|YP_004615740.1| - 0.0054 17.1 0.0 3 8.3 0.0 3.2 2 1 0 2 2 2 1 Putative NAD(P)-binding Amino_oxidase PF01593.24 gi|336476599|ref|YP_004615740.1| - 0.02 14.2 0.0 5.2 6.2 0.0 2.2 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Fer4_17 PF13534.6 gi|336476599|ref|YP_004615740.1| - 0.06 13.9 34.1 0.064 13.8 4.5 4.7 4 2 0 4 4 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336476599|ref|YP_004615740.1| - 0.067 13.7 36.6 0.17 12.4 0.9 5.1 3 2 3 6 6 5 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336476599|ref|YP_004615740.1| - 1.3 9.9 34.4 0.37 11.7 0.4 5.1 4 1 1 5 5 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336476599|ref|YP_004615740.1| - 1.9 9.1 26.8 0.31 11.6 1.7 4.3 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|336476599|ref|YP_004615740.1| - 3.3 8.5 22.9 1.2 10.0 0.9 4.7 5 0 0 5 5 3 0 4Fe-4S single cluster domain Fer4 PF00037.27 gi|336476600|ref|YP_004615741.1| - 5.9e-39 130.4 78.4 1.3e-08 34.3 2.3 8.4 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336476600|ref|YP_004615741.1| - 4.8e-34 116.7 54.2 9e-11 42.2 7.8 4.6 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336476600|ref|YP_004615741.1| - 7.1e-26 89.2 74.6 8.6e-06 25.6 2.1 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336476600|ref|YP_004615741.1| - 7.7e-26 90.0 56.1 3e-07 30.5 7.4 5.5 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336476600|ref|YP_004615741.1| - 7.2e-25 86.9 64.2 4.6e-07 29.9 9.1 6.9 3 2 5 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476600|ref|YP_004615741.1| - 3e-22 78.5 64.2 6.7e-06 26.2 11.2 7.0 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336476600|ref|YP_004615741.1| - 3.7e-20 72.6 56.1 0.00044 21.1 1.1 7.7 6 1 0 6 6 6 5 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|336476600|ref|YP_004615741.1| - 3.9e-18 65.7 45.2 0.00016 22.0 8.5 6.5 5 1 1 6 6 6 5 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476600|ref|YP_004615741.1| - 2.6e-17 61.8 70.1 8.3e-05 22.5 2.3 8.4 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336476600|ref|YP_004615741.1| - 1.3e-11 44.9 59.8 0.018 15.6 7.5 7.3 3 2 4 7 7 7 5 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476600|ref|YP_004615741.1| - 1.4e-09 37.7 68.6 0.0024 18.2 2.8 8.4 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_15 PF13459.6 gi|336476600|ref|YP_004615741.1| - 2.2e-07 31.5 55.7 0.038 14.7 1.5 8.2 8 0 0 8 8 8 6 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|336476600|ref|YP_004615741.1| - 1e-06 29.2 94.5 0.0017 19.2 6.8 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_13 PF13370.6 gi|336476600|ref|YP_004615741.1| - 0.0002 21.9 63.7 0.14 12.8 0.8 8.6 8 0 0 8 8 8 4 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|336476600|ref|YP_004615741.1| - 0.13 13.1 0.2 0.13 13.1 0.2 8.1 6 1 3 9 9 9 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|336476600|ref|YP_004615741.1| - 0.15 12.2 0.3 0.088 13.0 6.7 7.2 4 2 2 6 6 6 0 4Fe-4S dicluster domain GatB_N PF02934.15 gi|336476601|ref|YP_004615742.1| - 3.3e-65 220.2 0.1 4.4e-65 219.8 0.1 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|336476601|ref|YP_004615742.1| - 6.7e-20 71.5 0.1 1.3e-19 70.5 0.1 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|336476601|ref|YP_004615742.1| - 8.8e-15 54.7 0.1 2.4e-14 53.3 0.1 1.8 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|336476601|ref|YP_004615742.1| - 3.5e-05 23.9 1.8 4.4e-05 23.6 0.2 2.0 2 0 0 2 2 2 1 Yqey-like protein HTH_24 PF13412.6 gi|336476601|ref|YP_004615742.1| - 0.05 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF389 PF04087.14 gi|336476602|ref|YP_004615743.1| - 2.1e-32 112.1 18.5 2.1e-32 112.1 18.5 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF4514 PF14986.6 gi|336476602|ref|YP_004615743.1| - 9.9 6.2 8.2 4.4 7.4 1.4 3.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4514) CPSase_sm_chain PF00988.22 gi|336476603|ref|YP_004615744.1| - 4.2e-48 162.4 0.0 6.8e-48 161.7 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|336476603|ref|YP_004615744.1| - 1.1e-39 136.2 0.0 1.6e-39 135.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|336476603|ref|YP_004615744.1| - 7.6e-07 29.1 0.4 0.00023 21.0 0.4 2.2 1 1 0 1 1 1 1 Peptidase C26 CPSase_L_D2 PF02786.17 gi|336476604|ref|YP_004615745.1| - 4.4e-107 356.4 0.4 4.5e-69 232.2 0.1 2.6 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|336476604|ref|YP_004615745.1| - 7.4e-41 139.3 0.1 2.2e-40 137.8 0.1 1.9 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|336476604|ref|YP_004615745.1| - 6e-22 77.7 1.1 1e-20 73.7 0.0 3.7 5 1 1 6 6 5 1 MGS-like domain ATPgrasp_Ter PF15632.6 gi|336476604|ref|YP_004615745.1| - 4.1e-17 62.2 0.0 1.6e-07 31.1 0.0 2.9 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.22 gi|336476604|ref|YP_004615745.1| - 3.8e-16 59.1 0.1 4.8e-07 29.5 0.0 2.6 3 0 0 3 3 3 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|336476604|ref|YP_004615745.1| - 4.1e-16 59.1 0.0 2.8e-07 30.3 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|336476604|ref|YP_004615745.1| - 3e-15 56.6 0.9 8e-07 29.2 0.0 3.0 3 0 0 3 3 3 2 ATP-grasp domain GARS_A PF01071.19 gi|336476604|ref|YP_004615745.1| - 2.1e-09 37.4 0.0 0.00093 19.0 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|336476604|ref|YP_004615745.1| - 1.1e-06 28.4 0.0 0.03 13.9 0.0 3.1 3 1 0 3 3 3 2 RimK-like ATP-grasp domain Epimerase PF01370.21 gi|336476604|ref|YP_004615745.1| - 0.0024 17.4 0.0 0.039 13.4 0.0 2.3 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family ATP-grasp_5 PF13549.6 gi|336476604|ref|YP_004615745.1| - 0.005 16.3 0.0 0.079 12.4 0.0 2.8 2 0 0 2 2 2 1 ATP-grasp domain MerR-DNA-bind PF09278.11 gi|336476604|ref|YP_004615745.1| - 0.036 14.6 0.0 1.1 9.8 0.0 3.4 4 0 0 4 4 3 0 MerR, DNA binding Arginosuc_synth PF00764.19 gi|336476605|ref|YP_004615746.1| - 2e-174 580.4 0.0 2.3e-174 580.3 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|336476605|ref|YP_004615746.1| - 0.00027 20.5 0.0 0.0015 18.1 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|336476605|ref|YP_004615746.1| - 0.024 13.8 0.0 0.037 13.1 0.0 1.3 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 gi|336476605|ref|YP_004615746.1| - 0.092 11.5 0.0 0.17 10.6 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase RPGR1_C PF18111.1 gi|336476606|ref|YP_004615747.1| - 0.021 14.8 0.1 0.021 14.7 0.1 1.0 1 0 0 1 1 1 0 Retinitis pigmentosa G-protein regulator interacting C-terminal ArsP_1 PF03773.13 gi|336476607|ref|YP_004615748.1| - 2.3e-49 168.2 18.6 2.8e-49 167.9 18.6 1.0 1 0 0 1 1 1 1 Predicted permease DUF3433 PF11915.8 gi|336476607|ref|YP_004615748.1| - 0.21 12.0 0.3 0.21 12.0 0.3 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3433) MFS_1 PF07690.16 gi|336476607|ref|YP_004615748.1| - 0.46 9.4 28.7 0.51 9.2 26.3 2.0 1 1 1 2 2 2 0 Major Facilitator Superfamily TauE PF01925.19 gi|336476607|ref|YP_004615748.1| - 3.4 7.3 29.1 0.056 13.1 11.7 2.3 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE PadR PF03551.14 gi|336476608|ref|YP_004615749.1| - 2.8e-19 68.9 0.0 4.4e-19 68.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|336476608|ref|YP_004615749.1| - 5.6e-09 36.1 0.2 1.5e-08 34.7 0.2 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain RTP PF02334.16 gi|336476608|ref|YP_004615749.1| - 0.0034 18.0 0.0 0.0041 17.7 0.0 1.1 1 0 0 1 1 1 1 Replication terminator protein TrpP PF17099.5 gi|336476609|ref|YP_004615750.1| - 0.43 10.3 9.5 4.3 7.1 9.5 2.1 1 1 0 1 1 1 0 Tryptophan transporter TrpP Citrate_synt PF00285.21 gi|336476610|ref|YP_004615751.1| - 6.9e-119 397.1 0.0 7.8e-119 396.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain SDF PF00375.18 gi|336476611|ref|YP_004615752.1| - 1.1e-117 393.4 44.6 1.3e-117 393.2 44.6 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family RimK PF08443.11 gi|336476612|ref|YP_004615753.1| - 1.1e-63 214.2 0.0 1.4e-63 213.9 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Rimk_N PF18030.1 gi|336476612|ref|YP_004615753.1| - 2.8e-40 136.6 0.3 6.2e-40 135.5 0.1 1.7 2 0 0 2 2 2 1 RimK PreATP-grasp domain GSH-S_ATP PF02955.16 gi|336476612|ref|YP_004615753.1| - 3.2e-17 62.5 0.3 5e-17 61.9 0.3 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|336476612|ref|YP_004615753.1| - 9.8e-10 38.1 0.1 0.00085 18.7 0.0 3.1 1 1 1 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|336476612|ref|YP_004615753.1| - 2.4e-09 37.4 0.0 5.2e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|336476612|ref|YP_004615753.1| - 0.00033 20.3 0.2 0.0056 16.2 0.2 2.2 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_2 PF08442.10 gi|336476612|ref|YP_004615753.1| - 0.0018 17.9 0.3 0.085 12.4 0.0 2.2 1 1 0 2 2 2 1 ATP-grasp domain R2K_3 PF14243.6 gi|336476612|ref|YP_004615753.1| - 0.0026 17.8 0.0 0.004 17.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 ATPgrasp_YheCD PF14398.6 gi|336476612|ref|YP_004615753.1| - 0.003 16.9 0.0 0.27 10.5 0.0 3.1 1 1 0 1 1 1 1 YheC/D like ATP-grasp AstE_AspA PF04952.14 gi|336476613|ref|YP_004615754.1| - 2.1e-56 191.1 0.0 2.5e-56 190.9 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF2817 PF10994.8 gi|336476613|ref|YP_004615754.1| - 0.0023 17.4 0.0 0.036 13.5 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2817) Peptidase_M99 PF17033.5 gi|336476613|ref|YP_004615754.1| - 0.011 15.1 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 Carboxypeptidase controlling helical cell shape catalytic RimK PF08443.11 gi|336476614|ref|YP_004615755.1| - 1.1e-45 155.6 0.0 1.5e-45 155.1 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Rimk_N PF18030.1 gi|336476614|ref|YP_004615755.1| - 1.1e-18 67.4 0.0 2.1e-18 66.5 0.0 1.5 1 0 0 1 1 1 1 RimK PreATP-grasp domain GSH-S_ATP PF02955.16 gi|336476614|ref|YP_004615755.1| - 7.1e-15 54.8 0.0 1e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|336476614|ref|YP_004615755.1| - 2.7e-07 30.8 0.0 4e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|336476614|ref|YP_004615755.1| - 6.3e-06 25.7 0.0 0.00017 20.9 0.1 2.2 1 1 1 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|336476614|ref|YP_004615755.1| - 5.9e-05 22.7 0.0 0.00018 21.1 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|336476614|ref|YP_004615755.1| - 0.00022 20.8 0.0 0.0011 18.5 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|336476614|ref|YP_004615755.1| - 0.0051 16.3 0.0 0.017 14.6 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|336476614|ref|YP_004615755.1| - 0.0086 15.5 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Synapsin_C PF02750.14 gi|336476614|ref|YP_004615755.1| - 0.02 14.4 0.0 0.025 14.1 0.0 1.2 1 0 0 1 1 1 0 Synapsin, ATP binding domain ATPgrasp_YheCD PF14398.6 gi|336476614|ref|YP_004615755.1| - 0.03 13.6 0.2 0.93 8.7 0.2 2.9 1 1 0 1 1 1 0 YheC/D like ATP-grasp GARS_A PF01071.19 gi|336476614|ref|YP_004615755.1| - 0.084 12.6 0.0 0.17 11.6 0.0 1.5 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain dCache_1 PF02743.18 gi|336476615|ref|YP_004615756.1| - 4.6e-29 101.9 1.7 6.7e-27 94.9 0.2 2.4 2 0 0 2 2 2 2 Cache domain HATPase_c PF02518.26 gi|336476615|ref|YP_004615756.1| - 2.8e-20 72.9 0.0 6.2e-20 71.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|336476615|ref|YP_004615756.1| - 2.5e-05 24.5 0.0 5.4e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|336476615|ref|YP_004615756.1| - 3.2e-05 23.9 0.3 0.00011 22.1 0.3 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|336476615|ref|YP_004615756.1| - 8e-05 22.6 0.0 0.00019 21.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|336476615|ref|YP_004615756.1| - 9e-05 22.7 0.2 0.00041 20.6 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|336476615|ref|YP_004615756.1| - 0.00026 21.0 0.0 0.00054 19.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold sCache_2 PF17200.4 gi|336476615|ref|YP_004615756.1| - 0.0012 18.7 0.0 0.003 17.4 0.0 1.7 1 0 0 1 1 1 1 Single Cache domain 2 sCache_3_2 PF17203.4 gi|336476615|ref|YP_004615756.1| - 0.082 13.0 0.0 1.5 9.0 0.0 2.3 1 1 1 2 2 2 0 Single cache domain 3 LPG_synthase_TM PF03706.13 gi|336476616|ref|YP_004615757.1| - 1.2e-45 156.4 18.7 1.4e-45 156.2 18.7 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region NAS PF03059.16 gi|336476617|ref|YP_004615758.1| - 1.4e-07 31.2 0.0 1.8e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein RrnaAD PF00398.20 gi|336476617|ref|YP_004615758.1| - 1.8e-05 24.0 0.0 2.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase AlaDh_PNT_C PF01262.21 gi|336476617|ref|YP_004615758.1| - 2.1e-05 23.9 0.0 3.1e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_25 PF13649.6 gi|336476617|ref|YP_004615758.1| - 4.1e-05 24.2 0.0 6.9e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336476617|ref|YP_004615758.1| - 0.00011 22.0 0.1 0.00016 21.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|336476617|ref|YP_004615758.1| - 0.00016 21.5 0.1 0.0002 21.2 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Spermine_synth PF01564.17 gi|336476617|ref|YP_004615758.1| - 0.0004 19.9 0.0 0.00086 18.8 0.0 1.7 1 1 0 1 1 1 1 Spermine/spermidine synthase domain NAD_binding_7 PF13241.6 gi|336476617|ref|YP_004615758.1| - 0.0014 19.0 0.1 0.0023 18.3 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Methyltransf_3 PF01596.17 gi|336476617|ref|YP_004615758.1| - 0.004 16.3 0.0 0.011 14.9 0.0 1.6 1 1 0 1 1 1 1 O-methyltransferase Pyr_redox PF00070.27 gi|336476617|ref|YP_004615758.1| - 0.0041 17.6 0.0 0.0087 16.6 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|336476617|ref|YP_004615758.1| - 0.017 14.7 0.7 0.077 12.6 0.2 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA MTS PF05175.14 gi|336476617|ref|YP_004615758.1| - 0.018 14.6 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain TrkA_N PF02254.18 gi|336476617|ref|YP_004615758.1| - 0.018 15.3 0.2 0.35 11.2 0.1 2.3 1 1 1 2 2 2 0 TrkA-N domain PrmA PF06325.13 gi|336476617|ref|YP_004615758.1| - 0.04 13.3 0.1 0.051 13.0 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.6 gi|336476617|ref|YP_004615758.1| - 0.043 14.8 0.0 0.061 14.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336476617|ref|YP_004615758.1| - 0.054 14.2 0.0 0.097 13.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF4047 PF13256.6 gi|336476617|ref|YP_004615758.1| - 0.081 13.1 0.1 0.19 11.9 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4047) ComR_TPR PF18710.1 gi|336476617|ref|YP_004615758.1| - 0.15 11.6 0.8 1.4 8.4 0.1 2.1 2 0 0 2 2 2 0 ComR tetratricopeptide FeoB_N PF02421.18 gi|336476618|ref|YP_004615759.1| - 8.7e-49 165.0 0.5 1.6e-48 164.2 0.5 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|336476618|ref|YP_004615759.1| - 3.4e-20 72.4 17.1 5e-11 42.9 3.0 3.1 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|336476618|ref|YP_004615759.1| - 3.9e-16 59.2 0.1 7.1e-16 58.3 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|336476618|ref|YP_004615759.1| - 1.8e-09 37.1 1.0 1.8e-09 37.1 1.0 3.1 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus SRPRB PF09439.10 gi|336476618|ref|YP_004615759.1| - 1.6e-05 24.4 0.0 2.6e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Gtr1_RagA PF04670.12 gi|336476618|ref|YP_004615759.1| - 0.0023 17.4 0.0 0.0033 16.8 0.0 1.2 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.23 gi|336476618|ref|YP_004615759.1| - 0.023 14.7 0.4 0.27 11.3 0.0 2.1 1 1 1 2 2 2 0 Dynamin family PduV-EutP PF10662.9 gi|336476618|ref|YP_004615759.1| - 0.039 13.7 0.0 0.07 12.9 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|336476618|ref|YP_004615759.1| - 0.043 13.3 0.0 0.094 12.2 0.0 1.5 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|336476618|ref|YP_004615759.1| - 0.048 13.1 0.0 0.1 12.1 0.0 1.5 1 1 0 1 1 1 0 ADP-ribosylation factor family AIG1 PF04548.16 gi|336476618|ref|YP_004615759.1| - 0.061 12.6 0.1 0.091 12.1 0.1 1.2 1 0 0 1 1 1 0 AIG1 family Roc PF08477.13 gi|336476618|ref|YP_004615759.1| - 0.13 12.5 0.0 0.25 11.6 0.0 1.6 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase FeoA PF04023.14 gi|336476619|ref|YP_004615760.1| - 5.3e-11 42.6 0.0 5.3e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 FeoA domain Glycos_trans_3N PF02885.17 gi|336476620|ref|YP_004615761.1| - 5.4e-15 55.0 0.1 1.3e-14 53.8 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.13 gi|336476620|ref|YP_004615761.1| - 3.4e-14 52.2 0.1 1.3e-13 50.3 0.0 2.1 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.21 gi|336476620|ref|YP_004615761.1| - 3.2e-12 46.6 1.0 6.5e-11 42.3 1.0 2.3 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Molydop_binding PF01568.21 gi|336476620|ref|YP_004615761.1| - 5.9e-07 29.5 0.0 2.4e-06 27.5 0.0 1.9 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|336476620|ref|YP_004615761.1| - 0.014 15.6 0.1 0.031 14.5 0.1 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain DUF2254 PF10011.9 gi|336476620|ref|YP_004615761.1| - 0.019 13.8 0.0 0.031 13.1 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Trm56 PF01994.16 gi|336476621|ref|YP_004615762.1| - 1.9e-50 169.7 0.0 2.3e-50 169.5 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 NIF3 PF01784.18 gi|336476622|ref|YP_004615763.1| - 6.3e-53 179.9 1.1 7.8e-53 179.6 1.1 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Tnp_22_dsRBD PF17490.2 gi|336476622|ref|YP_004615763.1| - 0.012 15.6 0.0 0.032 14.2 0.0 1.7 1 0 0 1 1 1 0 L1 transposable element dsRBD-like domain CARDB PF07705.11 gi|336476623|ref|YP_004615764.1| - 1e-08 35.4 8.9 0.0024 18.1 0.0 4.4 4 1 0 4 4 4 3 CARDB DUF11 PF01345.18 gi|336476623|ref|YP_004615764.1| - 3.5e-07 30.4 0.7 0.005 17.1 0.0 3.5 3 0 0 3 3 3 2 Domain of unknown function DUF11 BatD PF13584.6 gi|336476623|ref|YP_004615764.1| - 3.8e-06 26.0 5.5 0.0013 17.7 3.9 3.0 2 1 0 2 2 2 1 Oxygen tolerance TRAP_beta PF05753.14 gi|336476623|ref|YP_004615764.1| - 1.4e-05 24.6 4.3 0.14 11.5 0.1 3.3 2 1 1 3 3 3 2 Translocon-associated protein beta (TRAPB) PGF-CTERM PF18204.1 gi|336476623|ref|YP_004615764.1| - 0.016 15.1 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 PGF-CTERM motif Phage_T4_gp36 PF03903.13 gi|336476623|ref|YP_004615764.1| - 0.08 12.9 0.4 6 6.8 0.0 3.1 2 1 0 3 3 3 0 Phage T4 tail fibre Glyco_hydro_2 PF00703.21 gi|336476623|ref|YP_004615764.1| - 0.092 13.4 2.9 2.4 8.8 0.2 3.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 2 DHHA1 PF02272.19 gi|336476624|ref|YP_004615765.1| - 3.4e-14 53.4 0.8 9.5e-14 52.0 0.3 2.1 2 2 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|336476624|ref|YP_004615765.1| - 3.2e-05 24.1 0.1 5.7e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 DHH family MMR_HSR1 PF01926.23 gi|336476625|ref|YP_004615766.1| - 1.1e-18 67.3 0.1 1.6e-18 66.8 0.1 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|336476625|ref|YP_004615766.1| - 2.5e-11 43.3 0.2 2.6e-10 40.1 0.2 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|336476625|ref|YP_004615766.1| - 7.3e-05 22.7 2.0 0.058 13.3 0.4 3.0 3 1 0 3 3 3 2 RsgA GTPase GTP_EFTU PF00009.27 gi|336476625|ref|YP_004615766.1| - 0.00033 20.3 0.1 0.001 18.6 0.0 1.8 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|336476625|ref|YP_004615766.1| - 0.0051 16.9 0.1 0.0086 16.1 0.1 1.5 1 1 0 1 1 1 1 Dynamin family SRPRB PF09439.10 gi|336476625|ref|YP_004615766.1| - 0.009 15.5 0.4 0.023 14.1 0.4 1.7 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|336476625|ref|YP_004615766.1| - 0.034 14.2 1.0 0.17 11.9 0.1 2.2 1 1 1 2 2 2 0 C-terminal region of MMR_HSR1 domain ABC_tran PF00005.27 gi|336476625|ref|YP_004615766.1| - 0.074 13.6 1.1 0.23 12.0 1.1 1.8 1 1 0 1 1 1 0 ABC transporter Roc PF08477.13 gi|336476625|ref|YP_004615766.1| - 0.079 13.2 0.5 1.1 9.5 0.0 2.5 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Radical_SAM PF04055.21 gi|336476626|ref|YP_004615767.1| - 5e-20 72.5 0.1 5.8e-20 72.3 0.1 1.0 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|336476626|ref|YP_004615767.1| - 2.3e-10 40.6 0.0 4.7e-10 39.6 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|336476626|ref|YP_004615767.1| - 0.00033 20.9 0.0 0.00072 19.8 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Tricho_coat PF05892.11 gi|336476626|ref|YP_004615767.1| - 0.077 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Trichovirus coat protein GGACT PF06094.12 gi|336476627|ref|YP_004615768.1| - 4.4e-20 72.5 0.1 4.9e-20 72.3 0.1 1.0 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like DAO PF01266.24 gi|336476628|ref|YP_004615769.1| - 7.4e-11 42.2 3.0 4.6e-05 23.2 1.1 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|336476628|ref|YP_004615769.1| - 2.6e-10 40.1 3.9 2.2e-07 30.5 0.3 3.0 2 1 0 2 2 2 2 FAD binding domain GIDA PF01134.22 gi|336476628|ref|YP_004615769.1| - 3.8e-09 36.1 0.0 6.5e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|336476628|ref|YP_004615769.1| - 4.3e-09 36.2 0.0 6.8e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|336476628|ref|YP_004615769.1| - 2.1e-07 30.5 4.2 1.9e-06 27.3 0.6 2.6 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336476628|ref|YP_004615769.1| - 4e-07 29.1 1.0 5.9e-07 28.5 0.4 1.5 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|336476628|ref|YP_004615769.1| - 1.5e-06 28.3 0.4 3.9e-06 27.0 0.4 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|336476628|ref|YP_004615769.1| - 4.4e-06 26.1 0.3 1.7e-05 24.2 0.0 1.9 2 1 1 3 3 3 1 Thi4 family FAD_binding_2 PF00890.24 gi|336476628|ref|YP_004615769.1| - 1.5e-05 24.3 1.8 1.5e-05 24.3 1.8 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|336476628|ref|YP_004615769.1| - 0.00012 22.5 0.1 0.022 15.3 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|336476628|ref|YP_004615769.1| - 0.00077 18.4 0.6 0.14 11.0 0.2 2.3 2 1 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|336476628|ref|YP_004615769.1| - 0.00086 18.5 1.1 0.017 14.2 0.4 2.3 3 0 0 3 3 3 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|336476628|ref|YP_004615769.1| - 0.0044 16.3 0.3 0.012 14.9 0.3 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|336476628|ref|YP_004615769.1| - 0.0079 15.5 0.3 0.021 14.1 0.3 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|336476628|ref|YP_004615769.1| - 0.012 15.5 0.4 0.034 14.0 0.4 1.8 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|336476628|ref|YP_004615769.1| - 0.094 12.3 0.4 0.47 10.0 0.2 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DNA_ligase_A_M PF01068.21 gi|336476629|ref|YP_004615770.1| - 3.1e-55 187.0 3.3 1.6e-53 181.4 1.8 2.2 2 0 0 2 2 2 2 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|336476629|ref|YP_004615770.1| - 3.3e-40 138.2 0.2 8.9e-40 136.8 0.2 1.8 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|336476629|ref|YP_004615770.1| - 8.7e-24 84.0 0.0 1.8e-23 83.0 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|336476629|ref|YP_004615770.1| - 5.7e-09 36.5 0.8 9.1e-09 35.8 0.8 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|336476629|ref|YP_004615770.1| - 1.3e-05 25.2 0.7 0.0067 16.4 0.1 2.6 2 0 0 2 2 2 2 DNA ligase OB-like domain UPF0242 PF06785.11 gi|336476629|ref|YP_004615770.1| - 0.023 14.8 1.5 4 7.5 0.5 2.6 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Arc_PepC PF06819.11 gi|336476629|ref|YP_004615770.1| - 0.079 13.1 4.8 0.42 10.7 0.2 3.1 3 0 0 3 3 3 0 Archaeal Peptidase A24 C-terminal Domain DNA_pol_B_thumb PF14791.6 gi|336476630|ref|YP_004615771.1| - 2.2e-21 75.8 0.0 7.3e-21 74.1 0.0 2.0 2 0 0 2 2 2 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|336476630|ref|YP_004615771.1| - 3.5e-17 62.5 5.7 1.3e-15 57.5 0.1 3.4 2 1 1 3 3 3 1 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|336476630|ref|YP_004615771.1| - 1.4e-12 48.0 3.5 3.6e-11 43.5 0.9 3.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain PHP PF02811.19 gi|336476630|ref|YP_004615771.1| - 9.4e-11 42.3 0.0 3.6e-10 40.4 0.0 2.0 1 1 0 1 1 1 1 PHP domain HHH_3 PF12836.7 gi|336476630|ref|YP_004615771.1| - 0.00019 21.6 0.2 0.13 12.5 0.0 3.6 3 1 0 3 3 3 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|336476630|ref|YP_004615771.1| - 0.00031 20.8 0.4 1.8 8.7 0.0 4.8 2 1 3 5 5 5 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|336476630|ref|YP_004615771.1| - 0.00095 19.4 0.1 0.0022 18.2 0.1 1.6 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.23 gi|336476630|ref|YP_004615771.1| - 0.05 13.5 1.1 3.8 7.6 0.0 3.7 4 0 0 4 4 4 0 Helix-hairpin-helix motif Orn_Arg_deC_N PF02784.16 gi|336476631|ref|YP_004615772.1| - 1.1e-59 201.8 0.0 1.4e-59 201.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|336476631|ref|YP_004615772.1| - 2.9e-26 91.5 0.0 5.5e-26 90.7 0.0 1.7 2 1 0 2 2 2 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|336476631|ref|YP_004615772.1| - 5.9e-11 42.4 0.0 1.1e-10 41.5 0.0 1.4 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain S6PP PF05116.13 gi|336476631|ref|YP_004615772.1| - 0.027 14.0 0.0 0.36 10.3 0.0 2.1 1 1 1 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase FKBP_C PF00254.28 gi|336476632|ref|YP_004615773.1| - 6.1e-11 42.5 1.5 4e-10 39.9 1.5 2.6 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|336476632|ref|YP_004615773.1| - 9.7e-05 22.4 0.0 0.0002 21.4 0.0 1.5 1 0 0 1 1 1 1 FKBP26_C-terminal CBF_beta PF02312.17 gi|336476632|ref|YP_004615773.1| - 0.051 13.2 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 Core binding factor beta subunit MarC PF01914.17 gi|336476633|ref|YP_004615774.1| - 9.4e-58 194.9 20.5 1.1e-57 194.8 20.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TMEM208_SND2 PF05620.11 gi|336476633|ref|YP_004615774.1| - 5.2 6.8 6.5 4.5 7.0 1.3 2.3 2 0 0 2 2 2 0 SRP-independent targeting protein 2/TMEM208 RIO1 PF01163.22 gi|336476634|ref|YP_004615775.1| - 4.1e-46 157.0 0.5 6.2e-46 156.4 0.5 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|336476634|ref|YP_004615775.1| - 9.4e-25 86.6 0.0 2e-24 85.6 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal Pkinase PF00069.25 gi|336476634|ref|YP_004615775.1| - 4.3e-06 26.3 0.3 7.4e-06 25.5 0.3 1.4 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|336476634|ref|YP_004615775.1| - 7.4e-05 22.8 0.1 0.0056 16.6 0.0 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.14 gi|336476634|ref|YP_004615775.1| - 0.013 14.9 0.1 0.091 12.1 0.1 2.2 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Suv3_N PF18114.1 gi|336476634|ref|YP_004615775.1| - 0.049 13.7 0.0 2.8 8.1 0.0 2.7 2 0 0 2 2 2 0 Suv3 helical N-terminal domain IL34 PF15036.6 gi|336476634|ref|YP_004615775.1| - 0.08 13.0 0.2 0.24 11.4 0.1 1.8 1 1 1 2 2 2 0 Interleukin 34 Pkinase_Tyr PF07714.17 gi|336476634|ref|YP_004615775.1| - 0.12 11.7 0.1 0.51 9.6 0.0 2.2 2 1 0 2 2 2 0 Protein tyrosine kinase DUF460 PF04312.13 gi|336476635|ref|YP_004615776.1| - 8e-51 171.5 0.1 2.3e-50 170.0 0.1 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|336476635|ref|YP_004615776.1| - 0.0099 16.2 0.2 0.029 14.7 0.2 1.8 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor Exonuc_VII_L PF02601.15 gi|336476635|ref|YP_004615776.1| - 0.022 14.3 2.4 0.041 13.4 2.4 1.5 1 0 0 1 1 1 0 Exonuclease VII, large subunit Phage_HK97_TLTM PF06120.11 gi|336476635|ref|YP_004615776.1| - 0.2 10.8 15.1 0.12 11.5 12.4 1.9 2 0 0 2 2 2 0 Tail length tape measure protein FAM76 PF16046.5 gi|336476635|ref|YP_004615776.1| - 0.3 10.4 14.1 0.8 9.0 14.1 1.7 1 0 0 1 1 1 0 FAM76 protein CREPT PF16566.5 gi|336476635|ref|YP_004615776.1| - 0.32 11.2 14.2 0.68 10.1 12.9 2.2 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Ead_Ea22 PF13935.6 gi|336476635|ref|YP_004615776.1| - 0.54 10.9 7.7 0.079 13.6 2.6 2.2 2 0 0 2 2 2 0 Ead/Ea22-like protein BLOC1_2 PF10046.9 gi|336476635|ref|YP_004615776.1| - 0.55 10.6 13.3 0.042 14.1 5.1 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TSKS PF15358.6 gi|336476635|ref|YP_004615776.1| - 0.72 8.2 7.6 1.4 7.2 7.6 1.4 1 0 0 1 1 1 0 Testis-specific serine kinase substrate DUF4407 PF14362.6 gi|336476635|ref|YP_004615776.1| - 1.3 8.3 5.8 2.3 7.5 5.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Atg14 PF10186.9 gi|336476635|ref|YP_004615776.1| - 1.9 7.5 13.2 3.7 6.5 13.2 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 LMBR1 PF04791.16 gi|336476635|ref|YP_004615776.1| - 2.5 6.9 7.8 4.1 6.2 7.8 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF3347 PF11827.8 gi|336476635|ref|YP_004615776.1| - 4.7 7.4 11.2 12 6.0 11.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) UPF0242 PF06785.11 gi|336476635|ref|YP_004615776.1| - 6.8 6.7 25.9 0.024 14.7 7.6 2.9 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus DUF2148 PF09918.9 gi|336476636|ref|YP_004615777.1| - 4.2e-32 110.0 1.6 7.4e-32 109.2 1.6 1.4 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.13 gi|336476636|ref|YP_004615777.1| - 0.017 14.8 1.7 0.039 13.6 1.7 1.6 1 0 0 1 1 1 0 Putative Fe-S cluster NTP_transf_3 PF12804.7 gi|336476637|ref|YP_004615778.1| - 3.5e-29 102.2 0.0 4.3e-29 101.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|336476637|ref|YP_004615778.1| - 3.5e-05 23.6 0.0 5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|336476637|ref|YP_004615778.1| - 0.08 12.5 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Jiraiya PF15038.6 gi|336476638|ref|YP_004615779.1| - 0.0036 16.7 0.9 0.0039 16.6 0.9 1.0 1 0 0 1 1 1 1 Jiraiya Fer4_5 PF12801.7 gi|336476639|ref|YP_004615780.1| - 2.7e-11 43.2 13.2 4.3e-09 36.2 4.5 4.0 5 1 1 6 6 6 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336476639|ref|YP_004615780.1| - 6.3e-07 29.5 17.1 0.00039 20.5 5.3 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476639|ref|YP_004615780.1| - 2.2e-06 28.2 15.7 0.0045 17.5 4.3 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336476639|ref|YP_004615780.1| - 4e-06 26.4 20.6 0.00041 20.0 1.7 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336476639|ref|YP_004615780.1| - 9.1e-06 25.5 13.3 0.0054 16.8 1.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336476639|ref|YP_004615780.1| - 3.1e-05 24.1 12.6 4.2e-05 23.7 11.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476639|ref|YP_004615780.1| - 5.6e-05 23.0 1.3 5.6e-05 23.0 1.3 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336476639|ref|YP_004615780.1| - 0.00011 22.3 25.7 0.0018 18.4 3.4 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336476639|ref|YP_004615780.1| - 0.00044 20.3 24.9 0.00081 19.5 17.7 3.1 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336476639|ref|YP_004615780.1| - 0.00081 19.9 17.8 0.013 16.0 6.4 2.8 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336476639|ref|YP_004615780.1| - 0.0055 17.6 21.1 0.025 15.5 3.5 3.0 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|336476639|ref|YP_004615780.1| - 0.038 14.4 21.0 0.086 13.3 2.1 2.6 3 1 0 3 3 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336476639|ref|YP_004615780.1| - 0.11 13.4 11.6 0.95 10.3 2.4 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|336476639|ref|YP_004615780.1| - 0.8 9.9 9.0 0.048 13.8 3.7 1.7 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|336476639|ref|YP_004615780.1| - 8.6 7.0 19.4 0.43 11.2 3.0 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fe_dep_repress PF01325.19 gi|336476640|ref|YP_004615781.1| - 0.00012 22.3 0.1 0.002 18.3 0.0 2.3 2 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|336476640|ref|YP_004615781.1| - 0.00017 21.4 0.1 0.00073 19.4 0.1 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|336476640|ref|YP_004615781.1| - 0.0005 20.0 0.3 0.00099 19.0 0.1 1.6 2 0 0 2 2 2 1 HTH domain TFIIE_alpha PF02002.17 gi|336476640|ref|YP_004615781.1| - 0.0087 15.9 1.4 0.011 15.5 1.4 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_36 PF13730.6 gi|336476640|ref|YP_004615781.1| - 0.01 15.8 0.2 1.9 8.5 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|336476640|ref|YP_004615781.1| - 0.013 15.4 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|336476640|ref|YP_004615781.1| - 0.018 15.0 0.2 0.099 12.6 0.1 2.0 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|336476640|ref|YP_004615781.1| - 0.03 13.9 0.6 0.088 12.4 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Trans_reg_C PF00486.28 gi|336476640|ref|YP_004615781.1| - 0.067 13.3 0.4 0.41 10.7 0.1 2.3 2 1 0 2 2 2 0 Transcriptional regulatory protein, C terminal UPF0051 PF01458.17 gi|336476642|ref|YP_004615783.1| - 3.5e-54 183.8 0.3 4.6e-54 183.4 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|336476643|ref|YP_004615784.1| - 4.3e-20 72.6 0.0 6.1e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336476643|ref|YP_004615784.1| - 5.9e-08 32.9 0.3 0.0014 18.5 0.3 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336476643|ref|YP_004615784.1| - 4.3e-05 23.0 0.5 0.07 12.5 0.2 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|336476643|ref|YP_004615784.1| - 0.0015 19.1 0.2 0.0025 18.4 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336476643|ref|YP_004615784.1| - 0.024 14.3 0.1 0.047 13.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TIP49 PF06068.13 gi|336476643|ref|YP_004615784.1| - 0.029 13.6 0.0 0.039 13.1 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_15 PF13175.6 gi|336476643|ref|YP_004615784.1| - 0.036 13.8 0.3 0.076 12.7 0.2 1.4 1 1 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|336476643|ref|YP_004615784.1| - 0.053 13.4 0.1 0.089 12.7 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|336476643|ref|YP_004615784.1| - 0.24 10.0 0.4 0.34 9.5 0.4 1.1 1 0 0 1 1 1 0 AAA domain Beta-Casp PF10996.8 gi|336476644|ref|YP_004615785.1| - 9.6e-17 61.3 0.0 2e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|336476644|ref|YP_004615785.1| - 2.5e-10 40.1 0.0 4.6e-08 32.9 0.0 2.5 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|336476644|ref|YP_004615785.1| - 1.8e-07 30.9 0.0 3.2e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336476644|ref|YP_004615785.1| - 5.6e-06 26.5 0.4 1.1e-05 25.5 0.4 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|336476644|ref|YP_004615785.1| - 5.7e-05 22.6 0.0 0.0001 21.8 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|336476644|ref|YP_004615785.1| - 0.00026 20.9 0.0 0.00098 19.1 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RecG_wedge PF17191.4 gi|336476644|ref|YP_004615785.1| - 0.038 13.6 0.0 0.54 9.9 0.0 2.3 2 0 0 2 2 2 0 RecG wedge domain Rhodanese PF00581.20 gi|336476644|ref|YP_004615785.1| - 0.081 13.5 0.1 0.36 11.4 0.0 2.1 3 0 0 3 3 3 0 Rhodanese-like domain Topoisom_bac PF01131.20 gi|336476645|ref|YP_004615786.1| - 3.2e-129 431.6 0.2 3.2e-129 431.6 0.2 1.7 2 0 0 2 2 2 1 DNA topoisomerase Toprim PF01751.22 gi|336476645|ref|YP_004615786.1| - 1.6e-17 63.6 0.5 5.1e-17 62.0 0.5 2.0 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|336476645|ref|YP_004615786.1| - 1.1e-15 57.1 1.9 1.1e-15 57.1 1.9 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.6 gi|336476645|ref|YP_004615786.1| - 1.9e-06 28.4 1.0 7.3e-06 26.5 1.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|336476645|ref|YP_004615786.1| - 7.4e-05 23.0 0.1 0.00017 21.8 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.9 gi|336476645|ref|YP_004615786.1| - 0.031 14.1 0.1 0.084 12.7 0.1 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|336476645|ref|YP_004615786.1| - 0.041 14.1 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Pathogenicity locus IMS_HHH PF11798.8 gi|336476645|ref|YP_004615786.1| - 0.065 13.6 0.1 0.16 12.4 0.1 1.6 1 0 0 1 1 1 0 IMS family HHH motif BAF PF02961.14 gi|336476645|ref|YP_004615786.1| - 0.067 13.6 0.5 0.18 12.3 0.2 1.8 1 1 0 1 1 1 0 Barrier to autointegration factor DUF2283 PF10049.9 gi|336476645|ref|YP_004615786.1| - 0.11 12.8 0.1 0.29 11.4 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Zn_ribbon_recom PF13408.6 gi|336476645|ref|YP_004615786.1| - 0.26 11.8 0.8 0.87 10.2 0.8 1.9 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain NusA_N PF08529.11 gi|336476645|ref|YP_004615786.1| - 2 8.8 7.9 0.16 12.3 0.7 2.6 2 0 0 2 2 2 0 NusA N-terminal domain CoA_binding_2 PF13380.6 gi|336476646|ref|YP_004615787.1| - 0.00085 19.8 0.0 0.0011 19.4 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain LDcluster4 PF18306.1 gi|336476647|ref|YP_004615788.1| - 1.1e-43 148.5 5.0 1.3e-43 148.3 5.0 1.0 1 0 0 1 1 1 1 SLOG cluster4 family DNA_processg_A PF02481.15 gi|336476647|ref|YP_004615788.1| - 9.3e-09 34.8 2.3 6.2e-06 25.6 1.4 2.1 1 1 1 2 2 2 2 DNA recombination-mediator protein A Lysine_decarbox PF03641.14 gi|336476647|ref|YP_004615788.1| - 3.2e-07 30.5 0.1 5.6e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase TPALS PF18178.1 gi|336476647|ref|YP_004615788.1| - 0.16 11.4 0.7 0.77 9.1 0.0 1.9 2 0 0 2 2 2 0 TIR- and PNP-associating SLOG family Ribo_biogen_C PF04034.13 gi|336476648|ref|YP_004615789.1| - 2.8e-48 162.8 0.0 3.4e-48 162.6 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|336476648|ref|YP_004615789.1| - 2.5e-12 46.4 0.3 3.7e-12 45.9 0.3 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI RNA_Me_trans PF04252.13 gi|336476648|ref|YP_004615789.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase Diphthami_syn_2 PF01902.17 gi|336476649|ref|YP_004615790.1| - 3.9e-70 235.8 0.6 8.6e-70 234.6 0.1 1.8 2 0 0 2 2 2 1 Diphthamide synthase Asn_synthase PF00733.21 gi|336476649|ref|YP_004615790.1| - 7.4e-42 144.3 0.0 1.8e-22 80.5 0.0 3.0 2 1 1 3 3 3 2 Asparagine synthase GATase_7 PF13537.6 gi|336476649|ref|YP_004615790.1| - 1.4e-12 47.6 0.0 4e-12 46.1 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|336476649|ref|YP_004615790.1| - 1.3e-06 28.6 0.0 4.8e-06 26.8 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain tRNA_Me_trans PF03054.16 gi|336476649|ref|YP_004615790.1| - 0.0038 16.1 0.0 0.53 9.0 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.17 gi|336476649|ref|YP_004615790.1| - 0.011 14.9 0.0 0.031 13.4 0.0 1.8 2 0 0 2 2 2 0 NAD synthase ATP_bind_3 PF01171.20 gi|336476649|ref|YP_004615790.1| - 0.033 14.0 0.0 0.33 10.7 0.0 2.4 2 0 0 2 2 2 0 PP-loop family PAPS_reduct PF01507.19 gi|336476649|ref|YP_004615790.1| - 0.056 13.5 0.0 15 5.6 0.0 2.7 2 1 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|336476649|ref|YP_004615790.1| - 0.094 12.2 0.0 8.4 5.8 0.0 2.5 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC PMSR PF01625.21 gi|336476650|ref|YP_004615791.1| - 1.3e-67 226.7 0.7 1.5e-67 226.6 0.7 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase ABC_tran PF00005.27 gi|336476651|ref|YP_004615792.1| - 8e-33 113.9 0.0 1.2e-32 113.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|336476651|ref|YP_004615792.1| - 4.1e-10 39.5 0.1 5.7e-05 22.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|336476651|ref|YP_004615792.1| - 4.5e-08 33.2 0.1 0.0019 18.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|336476651|ref|YP_004615792.1| - 4.4e-05 23.1 0.1 8.4e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|336476651|ref|YP_004615792.1| - 0.00043 20.6 0.5 0.029 14.7 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336476651|ref|YP_004615792.1| - 0.0008 19.8 0.0 0.0015 18.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|336476651|ref|YP_004615792.1| - 0.0011 18.7 0.0 0.0021 17.8 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|336476651|ref|YP_004615792.1| - 0.0029 17.2 0.0 0.3 10.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|336476651|ref|YP_004615792.1| - 0.0069 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|336476651|ref|YP_004615792.1| - 0.0088 16.6 0.1 0.015 15.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|336476651|ref|YP_004615792.1| - 0.013 15.5 0.0 0.023 14.6 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|336476651|ref|YP_004615792.1| - 0.019 15.1 0.8 0.11 12.6 0.8 2.0 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|336476651|ref|YP_004615792.1| - 0.026 13.9 0.1 4.6 6.5 0.0 2.3 2 0 0 2 2 2 0 KaiC cobW PF02492.19 gi|336476651|ref|YP_004615792.1| - 0.026 14.1 0.0 0.038 13.6 0.0 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|336476651|ref|YP_004615792.1| - 0.033 13.9 0.1 0.46 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|336476651|ref|YP_004615792.1| - 0.062 13.0 0.0 0.7 9.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein PIN_4 PF13638.6 gi|336476651|ref|YP_004615792.1| - 0.096 13.0 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 PIN domain NACHT PF05729.12 gi|336476651|ref|YP_004615792.1| - 0.12 12.3 0.0 0.34 10.8 0.0 1.7 1 0 0 1 1 1 0 NACHT domain ADSL_C PF10397.9 gi|336476651|ref|YP_004615792.1| - 0.12 12.9 0.2 1.6 9.3 0.0 2.2 2 0 0 2 2 2 0 Adenylosuccinate lyase C-terminus TniB PF05621.11 gi|336476651|ref|YP_004615792.1| - 0.13 11.6 0.1 8.7 5.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein MobA_MobL PF03389.15 gi|336476651|ref|YP_004615792.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 MobA/MobL family MMR_HSR1 PF01926.23 gi|336476651|ref|YP_004615792.1| - 0.15 12.2 0.6 1.4 9.0 0.2 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|336476651|ref|YP_004615792.1| - 0.17 12.3 0.0 1.5 9.3 0.0 2.2 2 0 0 2 2 2 0 RNA helicase PK PF00224.21 gi|336476652|ref|YP_004615793.1| - 1.4e-123 412.3 4.1 1.8e-123 411.9 4.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|336476652|ref|YP_004615793.1| - 5.5e-26 91.1 0.0 9e-25 87.2 0.0 2.8 4 0 0 4 4 4 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|336476652|ref|YP_004615793.1| - 1.6e-05 24.1 1.1 5.8e-05 22.3 0.4 2.0 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Metallophos_2 PF12850.7 gi|336476653|ref|YP_004615794.1| - 3.1e-27 95.8 0.1 3.7e-27 95.5 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|336476653|ref|YP_004615794.1| - 8.8e-09 36.1 2.7 1e-06 29.4 0.3 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|336476653|ref|YP_004615794.1| - 0.00011 21.6 0.2 0.047 13.0 0.0 2.2 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily PALB2_WD40 PF16756.5 gi|336476653|ref|YP_004615794.1| - 0.01 14.8 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 0 Partner and localizer of BRCA2 WD40 domain HCBP_related PF06594.11 gi|336476653|ref|YP_004615794.1| - 0.043 13.7 0.1 0.11 12.4 0.1 1.7 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain Metallophos_2 PF12850.7 gi|336476654|ref|YP_004615795.1| - 1.1e-28 100.5 0.0 1.4e-28 100.1 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|336476654|ref|YP_004615795.1| - 1.7e-11 45.0 0.5 2.3e-11 44.6 0.5 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Pyr_redox_2 PF07992.14 gi|336476655|ref|YP_004615796.1| - 5.8e-48 163.6 5.9 6.6e-48 163.4 5.9 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336476655|ref|YP_004615796.1| - 1.4e-28 100.0 7.5 1.3e-22 80.5 2.2 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336476655|ref|YP_004615796.1| - 3.6e-13 49.9 2.2 3.6e-13 49.9 2.2 3.8 3 1 1 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336476655|ref|YP_004615796.1| - 2.5e-07 29.8 4.1 0.0019 17.0 0.1 3.0 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.24 gi|336476655|ref|YP_004615796.1| - 4.2e-07 29.9 2.4 0.013 15.1 0.4 3.1 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|336476655|ref|YP_004615796.1| - 1.9e-06 27.2 7.6 2e-05 23.9 0.3 3.8 3 1 2 5 5 5 1 FAD binding domain K_oxygenase PF13434.6 gi|336476655|ref|YP_004615796.1| - 3.2e-05 23.2 0.3 0.0057 15.8 0.0 2.4 2 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|336476655|ref|YP_004615796.1| - 7.3e-05 22.2 0.8 0.0013 18.0 0.3 2.2 2 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|336476655|ref|YP_004615796.1| - 0.0003 21.0 0.1 0.0003 21.0 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|336476655|ref|YP_004615796.1| - 0.0035 16.6 0.1 0.0035 16.6 0.1 2.5 2 1 1 3 3 3 1 Thi4 family FAD_oxidored PF12831.7 gi|336476655|ref|YP_004615796.1| - 0.014 14.8 0.2 0.014 14.8 0.2 2.4 2 1 1 3 3 3 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|336476655|ref|YP_004615796.1| - 0.031 13.3 3.8 1.4 7.9 0.6 2.5 2 1 1 3 3 3 0 Lycopene cyclase protein GIDA PF01134.22 gi|336476655|ref|YP_004615796.1| - 0.033 13.3 0.5 0.033 13.3 0.5 3.6 3 2 1 4 4 4 0 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|336476655|ref|YP_004615796.1| - 2 8.9 4.6 1.4 9.4 1.1 2.4 2 2 0 2 2 2 0 Putative NAD(P)-binding Thioredoxin_3 PF13192.6 gi|336476656|ref|YP_004615797.1| - 1.3e-11 44.4 0.0 1.4e-11 44.2 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.20 gi|336476656|ref|YP_004615797.1| - 1.5e-05 24.9 0.0 1.7e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|336476656|ref|YP_004615797.1| - 1.7e-05 24.9 0.0 2.2e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.14 gi|336476656|ref|YP_004615797.1| - 0.0049 17.2 0.0 0.0058 17.0 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 gi|336476656|ref|YP_004615797.1| - 0.0069 16.8 0.1 0.0098 16.3 0.1 1.3 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|336476656|ref|YP_004615797.1| - 0.029 14.2 0.0 0.039 13.7 0.0 1.3 1 1 0 1 1 1 0 DSBA-like thioredoxin domain TraF PF13728.6 gi|336476656|ref|YP_004615797.1| - 0.063 13.1 0.0 0.069 13.0 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein GST_N PF02798.20 gi|336476656|ref|YP_004615797.1| - 0.068 13.5 0.0 0.099 13.0 0.0 1.3 1 1 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_4 PF13462.6 gi|336476656|ref|YP_004615797.1| - 0.11 12.6 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Lar_N PF09861.9 gi|336476657|ref|YP_004615798.1| - 4.8e-71 238.2 0.4 1.3e-70 236.8 0.1 1.8 2 0 0 2 2 2 1 Lactate racemase N-terminal domain DUF362 PF04015.12 gi|336476657|ref|YP_004615798.1| - 0.0029 17.9 0.0 0.0065 16.7 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF362) rpo132 PF12415.8 gi|336476657|ref|YP_004615798.1| - 0.13 11.5 0.1 0.28 10.5 0.1 1.6 1 0 0 1 1 1 0 Poxvirus DNA dependent RNA polymerase Peptidase_U32 PF01136.19 gi|336476658|ref|YP_004615799.1| - 3.2e-79 265.4 0.0 4.3e-79 264.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family U32 DUF2959 PF11172.8 gi|336476659|ref|YP_004615800.1| - 0.00078 19.6 0.7 3.6 7.7 0.0 3.3 2 1 1 3 3 3 2 Protein of unknown function (DUF2959) Tht1 PF04163.12 gi|336476659|ref|YP_004615800.1| - 0.018 13.8 2.4 0.47 9.2 0.3 2.2 2 0 0 2 2 2 0 Tht1-like nuclear fusion protein LcrR PF09621.10 gi|336476659|ref|YP_004615800.1| - 0.025 14.0 0.0 7 6.1 0.0 2.3 2 0 0 2 2 2 0 Type III secretion system regulator (LcrR) TetR_C_5 PF08360.11 gi|336476659|ref|YP_004615800.1| - 0.027 14.6 0.3 21 5.3 0.0 3.5 3 1 1 4 4 4 0 QacR-like protein, C-terminal region DUF2408 PF10303.9 gi|336476659|ref|YP_004615800.1| - 0.053 14.1 3.7 4.7 7.8 0.1 3.5 2 2 2 4 4 4 0 Protein of unknown function (DUF2408) DUF2203 PF09969.9 gi|336476659|ref|YP_004615800.1| - 0.18 12.5 2.2 5.8 7.7 0.1 3.0 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2203) AI-2E_transport PF01594.16 gi|336476659|ref|YP_004615800.1| - 0.2 10.7 2.2 6.3 5.9 0.0 3.0 3 0 0 3 3 3 0 AI-2E family transporter H-kinase_dim PF02895.14 gi|336476659|ref|YP_004615800.1| - 0.26 11.7 3.0 24 5.4 0.2 3.3 3 0 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain Cauli_AT PF03233.13 gi|336476659|ref|YP_004615800.1| - 0.26 11.2 3.7 9.2 6.2 0.1 3.7 2 2 1 3 3 3 0 Aphid transmission protein ApoLp-III PF07464.11 gi|336476659|ref|YP_004615800.1| - 0.59 10.2 4.2 2.5 8.2 0.1 2.7 3 1 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) DUF4061 PF13270.6 gi|336476659|ref|YP_004615800.1| - 0.65 10.3 0.1 0.65 10.3 0.1 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF4061) Casc1_N PF15927.5 gi|336476659|ref|YP_004615800.1| - 0.97 9.1 6.9 24 4.5 0.7 3.5 3 1 1 4 4 4 0 Cancer susceptibility candidate 1 N-terminus HisKA_3 PF07730.13 gi|336476659|ref|YP_004615800.1| - 1.4 9.5 6.6 63 4.2 0.2 3.8 3 1 0 3 3 3 0 Histidine kinase DUF1664 PF07889.12 gi|336476659|ref|YP_004615800.1| - 2.1 8.4 9.5 18 5.4 0.3 3.8 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) SSF PF00474.17 gi|336476660|ref|YP_004615801.1| - 7.8e-58 196.2 38.7 1.4e-57 195.5 38.7 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family CAAD PF14159.6 gi|336476660|ref|YP_004615801.1| - 0.27 11.1 12.4 0.26 11.1 4.1 3.6 3 0 0 3 3 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Radical_SAM PF04055.21 gi|336476661|ref|YP_004615802.1| - 2.7e-22 79.9 0.0 3.2e-21 76.4 0.0 2.3 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|336476661|ref|YP_004615802.1| - 5e-12 46.3 0.0 1.2e-11 45.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|336476661|ref|YP_004615802.1| - 4.8e-08 33.1 0.0 1.4e-07 31.6 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|336476661|ref|YP_004615802.1| - 7.8e-06 26.3 0.1 2.2e-05 24.9 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain GHL6 PF14871.6 gi|336476661|ref|YP_004615802.1| - 0.058 13.6 0.0 4 7.6 0.0 2.4 2 0 0 2 2 2 0 Hypothetical glycosyl hydrolase 6 Desulfoferrodox PF01880.18 gi|336476662|ref|YP_004615803.1| - 3.7e-26 91.6 1.5 4.5e-26 91.3 1.5 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin Gag_MA PF01140.19 gi|336476662|ref|YP_004615803.1| - 0.085 12.6 0.2 1.1 8.9 0.0 2.1 1 1 0 2 2 2 0 Matrix protein (MA), p15 TrkA_C PF02080.21 gi|336476663|ref|YP_004615804.1| - 8.2e-12 44.8 0.0 2e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain Cas_Csa4 PF09703.10 gi|336476663|ref|YP_004615804.1| - 0.0027 17.1 0.0 0.0037 16.6 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa4) tRNA-synt_1 PF00133.22 gi|336476664|ref|YP_004615805.1| - 5.2e-130 434.5 4.8 1.1e-128 430.2 4.8 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|336476664|ref|YP_004615805.1| - 2.8e-38 131.3 0.1 5.3e-38 130.4 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|336476664|ref|YP_004615805.1| - 6.9e-23 81.0 0.4 1.8e-13 50.0 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|336476664|ref|YP_004615805.1| - 5.5e-05 22.7 0.0 0.066 12.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|336476664|ref|YP_004615805.1| - 0.00056 19.5 0.1 0.0023 17.5 0.0 1.9 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 Baculo_ME53 PF06061.11 gi|336476664|ref|YP_004615805.1| - 0.0024 17.2 0.7 0.064 12.5 0.3 2.2 2 0 0 2 2 2 1 Baculoviridae ME53 tRNA-synt_1f PF01921.18 gi|336476664|ref|YP_004615805.1| - 0.014 14.4 0.0 0.38 9.6 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF4451 PF14616.6 gi|336476664|ref|YP_004615805.1| - 0.017 15.3 0.2 4.4 7.5 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4451) DrsE PF02635.15 gi|336476665|ref|YP_004615806.1| - 2.6e-11 43.9 0.0 3.1e-11 43.6 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|336476665|ref|YP_004615806.1| - 9.6e-07 28.8 0.0 1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family HMG-CoA_red PF00368.18 gi|336476666|ref|YP_004615807.1| - 5.9e-132 440.1 1.7 6.8e-132 439.9 1.7 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase ZnuA PF01297.17 gi|336476667|ref|YP_004615808.1| - 0.1 12.0 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic Aconitase PF00330.20 gi|336476669|ref|YP_004615810.1| - 3.7e-99 332.8 6.3 5.1e-97 325.8 6.3 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|336476669|ref|YP_004615810.1| - 0.0026 16.5 0.0 0.004 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CCG PF02754.16 gi|336476670|ref|YP_004615811.1| - 6.6e-18 64.7 2.3 2.9e-09 37.0 0.0 2.9 3 1 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|336476671|ref|YP_004615812.1| - 4.4e-10 39.9 6.0 7.3e-10 39.1 6.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336476671|ref|YP_004615812.1| - 4.3e-08 33.1 7.1 7.6e-08 32.4 7.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336476671|ref|YP_004615812.1| - 5.7e-08 33.2 8.1 9.3e-08 32.5 8.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476671|ref|YP_004615812.1| - 6.8e-08 32.6 7.8 1.1e-07 31.9 7.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476671|ref|YP_004615812.1| - 5e-07 30.2 8.6 8.1e-07 29.5 8.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476671|ref|YP_004615812.1| - 2.8e-05 24.3 2.3 2.8e-05 24.3 2.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336476671|ref|YP_004615812.1| - 0.00015 22.6 10.8 0.00064 20.6 10.8 2.0 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|336476671|ref|YP_004615812.1| - 0.00018 21.4 3.7 0.00018 21.4 3.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.27 gi|336476671|ref|YP_004615812.1| - 0.0015 18.2 12.9 0.0043 16.8 3.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336476671|ref|YP_004615812.1| - 0.0049 16.9 2.4 0.0049 16.9 2.4 2.1 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|336476671|ref|YP_004615812.1| - 0.0065 17.3 4.8 0.094 13.6 0.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476671|ref|YP_004615812.1| - 0.014 15.5 10.3 0.097 12.8 10.5 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336476671|ref|YP_004615812.1| - 0.056 14.0 0.5 0.056 14.0 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I FlpD PF02662.16 gi|336476672|ref|YP_004615813.1| - 5.9e-16 58.6 0.1 1.4e-13 50.9 0.0 3.4 3 0 0 3 3 3 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.14 gi|336476672|ref|YP_004615813.1| - 1.5e-13 50.6 2.8 9e-06 25.1 1.2 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|336476672|ref|YP_004615813.1| - 7.5e-11 41.4 33.4 0.00021 21.0 3.3 5.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336476672|ref|YP_004615813.1| - 8.6e-10 38.6 29.0 0.00024 21.2 0.5 4.2 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476672|ref|YP_004615813.1| - 3.2e-09 37.2 32.5 0.0007 20.1 1.1 5.5 5 1 2 7 7 6 4 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|336476672|ref|YP_004615813.1| - 4e-09 36.3 0.0 6.7e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_10 PF13237.6 gi|336476672|ref|YP_004615813.1| - 5.4e-08 32.8 36.3 0.00085 19.4 2.1 5.4 5 1 1 6 6 5 4 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|336476672|ref|YP_004615813.1| - 7e-07 29.4 0.2 2.5e-06 27.6 0.2 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|336476672|ref|YP_004615813.1| - 1.4e-06 27.7 2.2 2.2e-06 27.0 2.2 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_16 PF13484.6 gi|336476672|ref|YP_004615813.1| - 1.6e-06 29.0 29.5 0.025 15.5 0.2 5.6 6 0 0 6 6 4 3 4Fe-4S double cluster binding domain DAO PF01266.24 gi|336476672|ref|YP_004615813.1| - 2.6e-06 27.3 0.2 5.6e-05 22.9 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|336476672|ref|YP_004615813.1| - 1.2e-05 24.6 0.0 2.6e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Fer4_9 PF13187.6 gi|336476672|ref|YP_004615813.1| - 1.4e-05 25.2 37.3 5.3e-05 23.3 10.2 4.5 6 0 0 6 6 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476672|ref|YP_004615813.1| - 3.2e-05 23.7 31.2 0.0032 17.5 2.7 4.9 4 0 0 4 4 4 3 4Fe-4S binding domain GIDA PF01134.22 gi|336476672|ref|YP_004615813.1| - 0.00036 19.7 1.8 0.00036 19.7 1.8 2.4 2 1 1 3 3 3 1 Glucose inhibited division protein A Fer4_17 PF13534.6 gi|336476672|ref|YP_004615813.1| - 0.00065 20.2 30.6 0.013 16.0 1.6 5.4 6 0 0 6 6 5 3 4Fe-4S dicluster domain HI0933_like PF03486.14 gi|336476672|ref|YP_004615813.1| - 0.0009 18.1 1.9 0.002 16.9 1.8 1.6 2 0 0 2 2 2 1 HI0933-like protein Fer4_6 PF12837.7 gi|336476672|ref|YP_004615813.1| - 0.001 19.1 46.6 0.0062 16.6 2.6 5.4 6 0 0 6 6 4 3 4Fe-4S binding domain FAD_binding_3 PF01494.19 gi|336476672|ref|YP_004615813.1| - 0.0011 18.3 0.3 0.0018 17.6 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|336476672|ref|YP_004615813.1| - 0.0019 17.5 3.3 0.0059 15.9 2.3 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DUF538 PF04398.12 gi|336476672|ref|YP_004615813.1| - 0.0022 18.4 0.0 0.011 16.2 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function, DUF538 Pyr_redox PF00070.27 gi|336476672|ref|YP_004615813.1| - 0.0027 18.2 3.0 0.091 13.3 0.8 3.3 4 0 0 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_8 PF13183.6 gi|336476672|ref|YP_004615813.1| - 0.0049 17.3 1.0 0.0049 17.3 1.0 5.2 4 2 1 5 5 4 2 4Fe-4S dicluster domain AlaDh_PNT_C PF01262.21 gi|336476672|ref|YP_004615813.1| - 0.01 15.2 0.0 0.024 13.9 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 gi|336476672|ref|YP_004615813.1| - 0.025 13.9 0.1 0.042 13.1 0.1 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase TrmB PF01978.19 gi|336476673|ref|YP_004615814.1| - 0.0019 18.1 0.2 0.0037 17.1 0.2 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|336476673|ref|YP_004615814.1| - 0.021 14.8 0.0 0.064 13.2 0.0 1.8 1 1 1 2 2 2 0 MarR family DUF327 PF03885.13 gi|336476673|ref|YP_004615814.1| - 0.035 14.1 0.4 0.049 13.6 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF327) SMC_ScpB PF04079.16 gi|336476673|ref|YP_004615814.1| - 0.067 12.8 0.1 0.1 12.2 0.1 1.4 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB HMG_box_2 PF09011.10 gi|336476674|ref|YP_004615815.1| - 0.1 13.2 3.0 0.12 13.0 3.0 1.1 1 0 0 1 1 1 0 HMG-box domain Ribonucleas_3_3 PF14622.6 gi|336476677|ref|YP_004615818.1| - 8.4e-21 74.5 0.1 9.8e-21 74.3 0.1 1.1 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 gi|336476677|ref|YP_004615818.1| - 1.9e-10 41.3 0.0 3.1e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease III domain N6_Mtase PF02384.16 gi|336476678|ref|YP_004615819.1| - 1.8e-67 227.9 0.0 2.4e-67 227.4 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|336476678|ref|YP_004615819.1| - 7e-16 59.1 1.1 4.3e-15 56.5 0.0 2.7 2 1 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|336476678|ref|YP_004615819.1| - 7.1e-05 22.6 0.1 0.00064 19.5 0.1 2.3 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 HTH_23 PF13384.6 gi|336476679|ref|YP_004615820.1| - 3.4e-05 23.5 1.5 5.5e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_1_2 PF13022.6 gi|336476679|ref|YP_004615820.1| - 0.00022 21.3 0.0 0.00036 20.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase UBD PF16455.5 gi|336476679|ref|YP_004615820.1| - 0.0062 16.8 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 Ubiquitin-binding domain HTH_28 PF13518.6 gi|336476679|ref|YP_004615820.1| - 0.042 14.0 0.0 0.096 12.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Prim-Pol PF09250.11 gi|336476680|ref|YP_004615821.1| - 5.4e-18 65.8 0.0 9.5e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal Pox_D5 PF03288.16 gi|336476680|ref|YP_004615821.1| - 6.3e-12 45.8 1.2 1.6e-11 44.5 0.1 2.3 2 0 0 2 2 2 1 Poxvirus D5 protein-like D5_N PF08706.11 gi|336476680|ref|YP_004615821.1| - 2.4e-11 44.1 0.1 6.2e-11 42.8 0.1 1.8 1 0 0 1 1 1 1 D5 N terminal like RFX_DNA_binding PF02257.15 gi|336476680|ref|YP_004615821.1| - 0.00016 22.2 0.1 0.00042 20.9 0.1 1.6 1 0 0 1 1 1 1 RFX DNA-binding domain Cdc6_C PF09079.11 gi|336476680|ref|YP_004615821.1| - 0.0091 15.9 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain Sgf11_N PF18519.1 gi|336476683|ref|YP_004615824.1| - 0.12 12.0 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 SAGA-associated factor 11 N-terminal domain DUF262 PF03235.14 gi|336476684|ref|YP_004615825.1| - 3e-33 115.9 2.1 3e-33 115.9 2.1 2.8 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.11 gi|336476684|ref|YP_004615825.1| - 4.8e-11 42.7 0.7 1.7e-10 40.9 0.7 2.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) Mrr_cat PF04471.12 gi|336476685|ref|YP_004615826.1| - 1.5e-05 25.0 0.0 0.00051 20.0 0.0 2.5 1 1 0 1 1 1 1 Restriction endonuclease Phage_integrase PF00589.22 gi|336476686|ref|YP_004615827.1| - 1.5e-18 67.1 0.0 4.5e-18 65.6 0.0 1.8 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|336476686|ref|YP_004615827.1| - 7.3e-08 32.8 0.1 1.6e-07 31.7 0.1 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|336476686|ref|YP_004615827.1| - 2.7e-05 24.4 0.0 0.00059 20.1 0.0 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.6 gi|336476686|ref|YP_004615827.1| - 0.0009 18.6 0.9 0.0019 17.5 0.9 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|336476686|ref|YP_004615827.1| - 0.002 17.8 4.0 0.0043 16.7 4.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|336476686|ref|YP_004615827.1| - 0.0025 17.8 0.4 0.0051 16.8 0.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|336476686|ref|YP_004615827.1| - 0.034 14.9 1.0 0.078 13.7 1.0 1.6 1 0 0 1 1 1 0 zinc-ribbon family Phage_int_SAM_5 PF13102.6 gi|336476686|ref|YP_004615827.1| - 0.22 11.9 3.1 0.86 10.0 0.4 2.6 1 1 1 2 2 2 0 Phage integrase SAM-like domain NTP_transferase PF00483.23 gi|336476688|ref|YP_004615829.1| - 1.8e-49 168.6 0.0 2.3e-49 168.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|336476688|ref|YP_004615829.1| - 1.6e-17 62.4 26.8 1.3e-07 31.1 0.8 5.6 3 2 3 6 6 6 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|336476688|ref|YP_004615829.1| - 3.8e-09 37.1 0.0 5.3e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|336476688|ref|YP_004615829.1| - 8.3e-08 31.8 30.3 7.3e-05 22.4 3.5 5.7 3 2 1 5 5 5 3 Hexapeptide repeat of succinyl-transferase Glycos_transf_2 PF00535.26 gi|336476688|ref|YP_004615829.1| - 0.023 14.5 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 Fucokinase PF07959.12 gi|336476688|ref|YP_004615829.1| - 0.036 13.0 4.8 0.49 9.3 4.0 2.6 1 1 1 2 2 2 0 L-fucokinase DUF4954 PF16314.5 gi|336476688|ref|YP_004615829.1| - 0.089 10.9 4.5 0.13 10.4 4.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Bactofilin PF04519.13 gi|336476688|ref|YP_004615829.1| - 0.18 12.1 5.3 2.2 8.6 2.0 2.4 1 1 1 2 2 2 0 Polymer-forming cytoskeletal LPG_synthase_TM PF03706.13 gi|336476689|ref|YP_004615830.1| - 1.7e-48 165.8 27.5 2.1e-48 165.4 27.5 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region HTH_38 PF13936.6 gi|336476689|ref|YP_004615830.1| - 0.02 14.6 0.3 0.038 13.8 0.3 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain S_4TM PF18159.1 gi|336476689|ref|YP_004615830.1| - 0.059 12.7 0.3 0.059 12.7 0.3 2.7 3 1 0 3 3 3 0 SMODS-associating 4TM effector domain Radical_SAM PF04055.21 gi|336476690|ref|YP_004615831.1| - 3.8e-16 59.9 0.1 1.6e-15 57.9 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.7 gi|336476690|ref|YP_004615831.1| - 0.002 18.4 0.0 0.0051 17.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|336476690|ref|YP_004615831.1| - 0.0035 17.1 0.0 0.25 11.3 0.0 3.4 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|336476690|ref|YP_004615831.1| - 0.034 14.7 0.0 0.11 13.1 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain ILVD_EDD PF00920.21 gi|336476691|ref|YP_004615832.1| - 1.8e-212 706.5 0.2 2.1e-212 706.3 0.2 1.0 1 0 0 1 1 1 1 Dehydratase family Fer4 PF00037.27 gi|336476692|ref|YP_004615833.1| - 8.7e-13 47.5 38.7 0.00019 21.1 2.7 5.2 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336476692|ref|YP_004615833.1| - 2.4e-10 40.4 30.3 0.00035 20.7 11.3 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476692|ref|YP_004615833.1| - 3.4e-09 36.7 30.7 0.0005 20.2 13.6 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476692|ref|YP_004615833.1| - 4.5e-09 35.9 37.3 0.0029 17.6 1.6 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336476692|ref|YP_004615833.1| - 8.1e-09 36.3 27.4 0.028 15.3 0.9 4.5 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|336476692|ref|YP_004615833.1| - 2e-08 33.9 39.0 0.00048 20.1 2.7 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336476692|ref|YP_004615833.1| - 3.9e-08 33.3 36.6 0.013 15.6 16.4 3.9 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476692|ref|YP_004615833.1| - 5.4e-08 33.3 34.7 0.0092 16.6 1.4 4.0 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|336476692|ref|YP_004615833.1| - 1.4e-05 25.2 14.8 1.4e-05 25.2 14.8 2.4 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476692|ref|YP_004615833.1| - 4.4e-05 23.7 39.5 0.0021 18.4 1.0 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336476692|ref|YP_004615833.1| - 0.031 14.8 35.4 0.83 10.2 2.0 4.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336476692|ref|YP_004615833.1| - 0.055 14.0 1.1 0.055 14.0 1.1 4.5 3 1 1 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|336476692|ref|YP_004615833.1| - 0.21 12.6 44.3 0.26 12.3 3.8 4.6 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|336476692|ref|YP_004615833.1| - 0.29 11.6 35.8 1.7 9.2 13.5 4.1 2 2 1 3 3 3 0 4Fe-4S dicluster domain AFOR_N PF02730.15 gi|336476693|ref|YP_004615834.1| - 2.8e-65 219.9 0.0 4.1e-65 219.4 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|336476693|ref|YP_004615834.1| - 1.7e-62 211.6 0.0 2.2e-62 211.3 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Laminin_II PF06009.12 gi|336476694|ref|YP_004615835.1| - 0.0033 17.4 0.9 0.0033 17.4 0.9 3.3 4 0 0 4 4 4 1 Laminin Domain II MitMem_reg PF13012.6 gi|336476694|ref|YP_004615835.1| - 0.011 16.1 1.9 0.011 16.1 1.9 2.1 2 1 0 2 2 2 0 Maintenance of mitochondrial structure and function Fib_alpha PF08702.10 gi|336476694|ref|YP_004615835.1| - 0.012 15.8 3.7 0.012 15.8 3.7 2.4 3 1 0 3 3 3 0 Fibrinogen alpha/beta chain family DUF3450 PF11932.8 gi|336476694|ref|YP_004615835.1| - 0.054 12.8 0.1 0.054 12.8 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Noelin-1 PF12308.8 gi|336476694|ref|YP_004615835.1| - 0.06 13.3 1.9 0.1 12.6 0.2 2.3 2 1 0 2 2 2 0 Neurogenesis glycoprotein DUF1664 PF07889.12 gi|336476694|ref|YP_004615835.1| - 0.08 13.0 3.5 0.093 12.8 0.8 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) SKA1 PF07160.12 gi|336476694|ref|YP_004615835.1| - 0.13 12.1 11.2 0.7 9.7 11.0 2.2 1 1 0 1 1 1 0 Spindle and kinetochore-associated protein 1 BLOC1_2 PF10046.9 gi|336476694|ref|YP_004615835.1| - 0.15 12.4 6.8 0.22 11.9 0.5 3.3 2 1 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlaC_arch PF05377.11 gi|336476694|ref|YP_004615835.1| - 0.19 12.1 4.5 7.3 7.1 0.1 3.5 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) NPV_P10 PF05531.12 gi|336476694|ref|YP_004615835.1| - 0.44 11.0 6.1 0.18 12.3 0.7 3.1 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF4200 PF13863.6 gi|336476694|ref|YP_004615835.1| - 0.61 10.5 6.0 0.33 11.3 0.4 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) DMPK_coil PF08826.10 gi|336476694|ref|YP_004615835.1| - 1 9.5 5.1 4.3 7.5 0.5 2.7 2 0 0 2 2 2 0 DMPK coiled coil domain like DASH_Dad3 PF08656.10 gi|336476694|ref|YP_004615835.1| - 1.9 8.6 5.8 17 5.5 0.1 3.3 3 1 0 3 3 3 0 DASH complex subunit Dad3 XhlA PF10779.9 gi|336476694|ref|YP_004615835.1| - 6.6 7.0 12.8 22 5.4 1.9 4.1 2 1 0 3 3 3 0 Haemolysin XhlA DASH_Dad2 PF08654.10 gi|336476694|ref|YP_004615835.1| - 7.5 7.0 8.5 7.9 7.0 2.9 3.3 2 1 1 3 3 3 0 DASH complex subunit Dad2 MtrH PF02007.18 gi|336476695|ref|YP_004615836.1| - 1.2e-118 395.6 0.0 1.4e-118 395.4 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrA PF04208.14 gi|336476696|ref|YP_004615837.1| - 3.4e-56 189.6 0.3 4.1e-56 189.3 0.3 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A fragilysinNterm PF16376.5 gi|336476696|ref|YP_004615837.1| - 0.0097 15.7 0.4 0.018 14.8 0.3 1.7 1 1 1 2 2 2 1 N-terminal domain of fragilysin PTA_PTB PF01515.19 gi|336476697|ref|YP_004615838.1| - 0.00069 19.0 0.1 0.095 12.0 0.0 2.2 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase AAA PF00004.29 gi|336476698|ref|YP_004615839.1| - 7.2e-10 39.4 0.0 1.5e-09 38.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|336476698|ref|YP_004615839.1| - 1e-06 28.8 0.0 3.7e-06 27.0 0.0 1.9 2 1 0 2 2 1 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|336476698|ref|YP_004615839.1| - 0.00018 21.3 0.0 0.0025 17.6 0.0 2.6 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|336476698|ref|YP_004615839.1| - 0.00076 19.8 0.1 1.5 9.1 0.0 2.8 2 1 1 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|336476698|ref|YP_004615839.1| - 0.0039 16.9 0.2 0.0071 16.1 0.2 1.3 1 0 0 1 1 1 1 AAA domain DEAD PF00270.29 gi|336476698|ref|YP_004615839.1| - 0.0041 16.9 0.0 1.3 8.8 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase NACHT PF05729.12 gi|336476698|ref|YP_004615839.1| - 0.008 16.1 0.0 0.25 11.2 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_14 PF13173.6 gi|336476698|ref|YP_004615839.1| - 0.021 14.9 0.0 0.047 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|336476698|ref|YP_004615839.1| - 0.032 13.5 0.0 0.085 12.1 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin IstB_IS21 PF01695.17 gi|336476698|ref|YP_004615839.1| - 0.044 13.5 0.0 0.079 12.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein TPP_enzyme_M_2 PF16582.5 gi|336476698|ref|YP_004615839.1| - 0.047 13.4 0.2 0.082 12.6 0.2 1.4 1 0 0 1 1 1 0 Middle domain of thiamine pyrophosphate AAA_16 PF13191.6 gi|336476698|ref|YP_004615839.1| - 0.048 14.0 0.1 0.27 11.6 0.1 2.2 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|336476698|ref|YP_004615839.1| - 0.054 13.9 0.0 0.28 11.6 0.0 2.2 1 1 0 1 1 1 0 RNA helicase AAA_assoc_2 PF16193.5 gi|336476698|ref|YP_004615839.1| - 0.056 13.8 0.0 0.18 12.1 0.0 1.9 1 0 0 1 1 1 0 AAA C-terminal domain DUF815 PF05673.13 gi|336476698|ref|YP_004615839.1| - 0.099 11.8 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_25 PF13481.6 gi|336476698|ref|YP_004615839.1| - 0.12 12.0 0.1 0.73 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_6 PF12774.7 gi|336476698|ref|YP_004615839.1| - 0.15 11.0 0.0 0.29 10.1 0.0 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region TsaE PF02367.17 gi|336476698|ref|YP_004615839.1| - 0.16 12.0 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Topo-VIb_trans PF09239.11 gi|336476699|ref|YP_004615840.1| - 9e-67 223.8 0.0 1.5e-66 223.1 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|336476699|ref|YP_004615840.1| - 7e-45 151.9 1.5 2e-44 150.4 0.8 2.1 2 0 0 2 2 2 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|336476699|ref|YP_004615840.1| - 7.6e-11 42.5 0.1 2.1e-10 41.1 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|336476699|ref|YP_004615840.1| - 5e-08 32.9 0.0 1.1e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|336476699|ref|YP_004615840.1| - 0.0095 14.7 0.5 0.019 13.7 0.0 1.7 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_5 PF14501.6 gi|336476699|ref|YP_004615840.1| - 0.035 14.0 0.0 0.086 12.8 0.0 1.6 1 0 0 1 1 1 0 GHKL domain TP6A_N PF04406.14 gi|336476700|ref|YP_004615841.1| - 5.3e-15 55.2 0.2 1e-14 54.2 0.2 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Radical_SAM PF04055.21 gi|336476701|ref|YP_004615842.1| - 8.2e-21 75.1 0.0 2.5e-20 73.5 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|336476701|ref|YP_004615842.1| - 0.00084 19.6 0.0 0.0017 18.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.7 gi|336476701|ref|YP_004615842.1| - 0.0042 17.1 0.2 0.0042 17.1 0.2 2.8 3 0 0 3 3 3 1 Double zinc ribbon Binary_toxB_3 PF17476.2 gi|336476701|ref|YP_004615842.1| - 0.0096 16.1 0.0 0.021 15.0 0.0 1.5 1 0 0 1 1 1 1 Clostridial binary toxin B/anthrax toxin PA domain 3 zf-ribbon_3 PF13248.6 gi|336476701|ref|YP_004615842.1| - 0.071 12.5 8.8 0.33 10.4 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|336476701|ref|YP_004615842.1| - 0.24 11.0 6.5 4.3 7.0 0.0 3.0 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|336476701|ref|YP_004615842.1| - 0.26 11.0 10.2 0.57 10.0 0.4 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DUF1272 PF06906.11 gi|336476701|ref|YP_004615842.1| - 0.32 11.1 4.0 2.9 8.0 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF1272) GFA PF04828.14 gi|336476701|ref|YP_004615842.1| - 1.1 9.6 0.0 1.1 9.6 0.0 3.5 3 1 1 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme RNA_POL_M_15KD PF02150.16 gi|336476701|ref|YP_004615842.1| - 4.4 7.3 13.6 0.13 12.2 1.6 3.7 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit DiS_P_DiS PF06750.13 gi|336476701|ref|YP_004615842.1| - 4.7 7.4 5.6 2.2 8.4 0.1 2.8 3 0 0 3 3 3 0 Bacterial Peptidase A24 N-terminal domain YhfH PF14149.6 gi|336476701|ref|YP_004615842.1| - 6 6.9 11.8 4 7.5 0.1 3.6 4 0 0 4 4 3 0 YhfH-like protein Hist_deacetyl PF00850.19 gi|336476702|ref|YP_004615843.1| - 4.7e-81 272.6 0.0 7e-81 272.0 0.0 1.3 1 0 0 1 1 1 1 Histone deacetylase domain PfkB PF00294.24 gi|336476703|ref|YP_004615844.1| - 3.9e-49 167.6 0.0 5e-49 167.2 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF3203 PF11462.8 gi|336476703|ref|YP_004615844.1| - 0.14 12.4 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3203) DUF555 PF04475.12 gi|336476704|ref|YP_004615845.1| - 1.3e-49 166.7 0.1 1.4e-49 166.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.12 gi|336476704|ref|YP_004615845.1| - 0.039 14.2 0.0 0.11 12.8 0.0 1.7 1 0 0 1 1 1 0 Dodecin zf-ribbon_3 PF13248.6 gi|336476704|ref|YP_004615845.1| - 0.085 12.3 0.1 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DUF357 PF04010.13 gi|336476705|ref|YP_004615846.1| - 2.8e-31 107.4 0.4 3.4e-31 107.1 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF87 PF01935.17 gi|336476706|ref|YP_004615847.1| - 7.2e-41 140.8 0.8 1.3e-40 139.9 0.8 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|336476706|ref|YP_004615847.1| - 2.1e-08 34.2 0.2 6.7e-08 32.6 0.2 1.9 1 0 0 1 1 1 1 HAS barrel domain DUF853 PF05872.12 gi|336476706|ref|YP_004615847.1| - 0.00016 20.5 0.0 0.28 9.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|336476706|ref|YP_004615847.1| - 0.00027 20.0 0.1 0.0019 17.2 0.1 2.1 2 1 0 2 2 2 1 AAA-like domain DEAD PF00270.29 gi|336476706|ref|YP_004615847.1| - 0.0042 16.9 0.0 0.94 9.2 0.0 3.0 2 1 0 2 2 2 1 DEAD/DEAH box helicase TrwB_AAD_bind PF10412.9 gi|336476706|ref|YP_004615847.1| - 0.0074 15.2 0.0 0.2 10.6 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|336476706|ref|YP_004615847.1| - 0.017 15.2 0.0 0.045 13.7 0.0 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|336476706|ref|YP_004615847.1| - 0.027 14.8 0.0 4.9 7.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain Zot PF05707.12 gi|336476706|ref|YP_004615847.1| - 0.04 13.6 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) T4SS-DNA_transf PF02534.14 gi|336476706|ref|YP_004615847.1| - 0.074 11.8 0.1 0.21 10.4 0.1 1.6 1 1 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer TP_methylase PF00590.20 gi|336476707|ref|YP_004615848.1| - 9.3e-18 64.9 0.0 1.2e-17 64.6 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Cpn60_TCP1 PF00118.24 gi|336476708|ref|YP_004615849.1| - 1.9e-167 557.8 17.9 2.2e-167 557.6 17.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family S4 PF01479.25 gi|336476709|ref|YP_004615850.1| - 2e-14 53.0 0.1 5.3e-14 51.7 0.1 1.8 1 0 0 1 1 1 1 S4 domain FtsJ PF01728.19 gi|336476709|ref|YP_004615850.1| - 1.2e-06 28.7 0.0 7.8e-06 26.1 0.0 2.0 1 1 0 1 1 1 1 FtsJ-like methyltransferase Fibrillarin PF01269.17 gi|336476709|ref|YP_004615850.1| - 2.8e-05 23.4 0.0 3.7e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_25 PF13649.6 gi|336476709|ref|YP_004615850.1| - 3.1e-05 24.6 0.0 6.5e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336476709|ref|YP_004615850.1| - 0.00011 22.7 0.0 0.00031 21.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336476709|ref|YP_004615850.1| - 0.00017 21.4 0.0 0.00038 20.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.6 gi|336476709|ref|YP_004615850.1| - 0.003 17.3 0.1 0.0057 16.5 0.1 1.4 1 0 0 1 1 1 1 S4 domain Methyltransf_23 PF13489.6 gi|336476709|ref|YP_004615850.1| - 0.013 15.3 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|336476709|ref|YP_004615850.1| - 0.03 15.4 0.0 0.054 14.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CmcI PF04989.12 gi|336476709|ref|YP_004615850.1| - 0.048 13.3 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 Cephalosporin hydroxylase Methyltransf_12 PF08242.12 gi|336476709|ref|YP_004615850.1| - 0.049 14.4 0.0 0.09 13.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Oxidored_FMN PF00724.20 gi|336476710|ref|YP_004615851.1| - 1.1e-71 241.9 0.0 1.3e-71 241.7 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.21 gi|336476710|ref|YP_004615851.1| - 5.7e-06 26.0 0.0 4.1e-05 23.2 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein Dus PF01207.17 gi|336476710|ref|YP_004615851.1| - 3.7e-05 23.0 0.0 6.1e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) MgtE PF01769.16 gi|336476711|ref|YP_004615852.1| - 3.6e-28 98.5 8.4 3.6e-28 98.5 8.4 1.9 1 1 1 2 2 2 1 Divalent cation transporter CBS PF00571.28 gi|336476711|ref|YP_004615852.1| - 7.6e-18 64.7 2.8 9e-08 32.5 0.1 2.7 2 0 0 2 2 2 2 CBS domain CbiZ PF01955.18 gi|336476712|ref|YP_004615853.1| - 1.1e-39 136.5 0.6 1.3e-39 136.3 0.6 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase FAM25 PF15825.5 gi|336476712|ref|YP_004615853.1| - 0.7 10.3 5.6 2.6 8.4 1.4 2.9 3 0 0 3 3 3 0 FAM25 family AP_endonuc_2 PF01261.24 gi|336476713|ref|YP_004615854.1| - 1.8e-16 60.2 0.1 9.1e-16 57.9 0.1 2.0 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel ThiC_Rad_SAM PF01964.18 gi|336476714|ref|YP_004615855.1| - 3e-181 602.8 0.4 3.5e-181 602.6 0.4 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Radical_SAM PF04055.21 gi|336476715|ref|YP_004615856.1| - 8e-07 29.6 0.4 2.6e-06 27.9 0.2 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|336476715|ref|YP_004615856.1| - 0.055 13.7 0.1 0.11 12.7 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain PmbA_TldD PF01523.16 gi|336476716|ref|YP_004615857.1| - 7.8e-61 206.4 1.8 1e-60 206.0 1.8 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|336476717|ref|YP_004615858.1| - 9.7e-65 219.2 0.3 1.4e-64 218.6 0.3 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.13 gi|336476718|ref|YP_004615859.1| - 4.4e-32 111.3 6.0 7.8e-32 110.5 6.0 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|336476718|ref|YP_004615859.1| - 1.6e-30 106.4 0.0 1.4e-21 76.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|336476718|ref|YP_004615859.1| - 1.2e-17 64.0 0.1 6.7e-10 38.7 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|336476718|ref|YP_004615859.1| - 6.7e-16 58.4 0.5 1e-08 35.1 0.0 3.3 3 0 0 3 3 3 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|336476718|ref|YP_004615859.1| - 8e-12 45.3 0.0 3.6e-05 23.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|336476718|ref|YP_004615859.1| - 2.2e-11 43.6 0.6 4.7e-11 42.6 0.6 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 gi|336476718|ref|YP_004615859.1| - 1.4e-08 35.2 0.0 0.0025 18.2 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|336476718|ref|YP_004615859.1| - 5.3e-08 32.2 1.7 0.012 14.7 0.0 3.6 4 0 0 4 4 4 2 MCM P-loop domain RuvB_N PF05496.12 gi|336476718|ref|YP_004615859.1| - 1.8e-05 24.6 0.1 0.014 15.2 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_3 PF07726.11 gi|336476718|ref|YP_004615859.1| - 4.7e-05 23.3 0.3 0.23 11.3 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|336476718|ref|YP_004615859.1| - 5.8e-05 23.4 0.0 0.0033 17.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|336476718|ref|YP_004615859.1| - 0.00013 22.1 0.0 0.32 11.1 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|336476718|ref|YP_004615859.1| - 0.00015 21.3 0.0 0.0012 18.3 0.0 2.4 3 0 0 3 3 2 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|336476718|ref|YP_004615859.1| - 0.00016 22.0 1.0 0.0016 18.8 1.0 2.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336476718|ref|YP_004615859.1| - 0.0025 18.2 0.0 0.14 12.5 0.0 2.7 2 0 0 2 2 2 1 AAA ATPase domain PhoH PF02562.16 gi|336476718|ref|YP_004615859.1| - 0.0043 16.5 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.6 gi|336476718|ref|YP_004615859.1| - 0.0071 16.1 0.0 0.046 13.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|336476718|ref|YP_004615859.1| - 0.016 15.2 0.1 1.2 9.1 0.0 2.8 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|336476718|ref|YP_004615859.1| - 0.022 14.5 0.0 0.088 12.5 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|336476718|ref|YP_004615859.1| - 0.023 14.9 0.0 0.063 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|336476718|ref|YP_004615859.1| - 0.024 15.2 0.0 0.082 13.5 0.0 2.0 1 0 0 1 1 1 0 AAA domain Tugs PF17840.1 gi|336476718|ref|YP_004615859.1| - 0.031 14.5 0.0 0.087 13.0 0.0 1.8 1 0 0 1 1 1 0 Tethering Ubl4a to BAGS domain ABC_tran PF00005.27 gi|336476718|ref|YP_004615859.1| - 0.038 14.5 0.0 0.14 12.7 0.0 1.9 2 0 0 2 2 1 0 ABC transporter AAA_2 PF07724.14 gi|336476718|ref|YP_004615859.1| - 0.041 14.0 0.1 12 6.0 0.0 2.8 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) FtsK_SpoIIIE PF01580.18 gi|336476718|ref|YP_004615859.1| - 0.047 13.0 0.0 0.16 11.3 0.0 1.8 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF815 PF05673.13 gi|336476718|ref|YP_004615859.1| - 0.059 12.5 0.0 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Parvo_NS1 PF01057.17 gi|336476718|ref|YP_004615859.1| - 0.061 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TrwB_AAD_bind PF10412.9 gi|336476718|ref|YP_004615859.1| - 0.084 11.8 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.6 gi|336476718|ref|YP_004615859.1| - 0.11 12.8 0.0 0.37 11.0 0.0 2.0 2 0 0 2 2 1 0 AAA domain MCM_lid PF17855.1 gi|336476718|ref|YP_004615859.1| - 0.16 12.4 1.1 0.77 10.2 0.2 2.4 1 1 1 2 2 2 0 MCM AAA-lid domain VirB3 PF05101.13 gi|336476718|ref|YP_004615859.1| - 0.17 12.1 5.5 0.34 11.2 5.5 1.4 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein PALP PF00291.25 gi|336476720|ref|YP_004615861.1| - 2.1e-33 116.0 0.0 2.6e-33 115.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TPP_enzyme_C PF02775.21 gi|336476721|ref|YP_004615862.1| - 7.4e-19 68.0 0.0 1.7e-17 63.6 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|336476721|ref|YP_004615862.1| - 4.7e-10 39.3 0.0 2.2e-09 37.2 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.19 gi|336476721|ref|YP_004615862.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TrkA_N PF02254.18 gi|336476722|ref|YP_004615863.1| - 2.9e-28 98.4 2.0 6.3e-28 97.4 2.0 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|336476722|ref|YP_004615863.1| - 2.1e-10 40.3 0.0 7.6e-10 38.5 0.0 2.0 1 0 0 1 1 1 1 TrkA-C domain Sacchrp_dh_NADP PF03435.18 gi|336476722|ref|YP_004615863.1| - 0.0025 18.1 0.7 0.037 14.3 0.7 2.2 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|336476722|ref|YP_004615863.1| - 0.07 12.5 0.0 0.093 12.1 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|336476722|ref|YP_004615863.1| - 0.077 13.5 0.0 1.9 9.0 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|336476723|ref|YP_004615864.1| - 4.8e-18 65.5 1.6 7.9e-18 64.8 1.6 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|336476723|ref|YP_004615864.1| - 3.8e-15 55.6 8.5 6.6e-15 54.8 8.5 1.3 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.21 gi|336476723|ref|YP_004615864.1| - 6.2e-13 48.4 0.0 1.5e-10 40.8 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain Ion_trans PF00520.31 gi|336476723|ref|YP_004615864.1| - 0.00096 18.4 5.0 0.0015 17.8 5.0 1.3 1 0 0 1 1 1 1 Ion transport protein Cofilin_ADF PF00241.20 gi|336476723|ref|YP_004615864.1| - 0.14 12.0 0.1 0.25 11.1 0.1 1.4 1 0 0 1 1 1 0 Cofilin/tropomyosin-type actin-binding protein SpoIIIAC PF06686.11 gi|336476723|ref|YP_004615864.1| - 0.46 10.7 4.0 0.22 11.7 0.5 2.2 2 0 0 2 2 2 0 Stage III sporulation protein AC/AD protein family MJ1316 PF04457.12 gi|336476724|ref|YP_004615865.1| - 2.5e-12 47.3 0.1 3e-12 47.1 0.1 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain OrfB_IS605 PF01385.19 gi|336476725|ref|YP_004615866.1| - 4.1e-26 91.5 1.4 8.3e-26 90.6 1.4 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|336476725|ref|YP_004615866.1| - 4.3e-21 74.6 0.4 9e-21 73.6 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|336476725|ref|YP_004615866.1| - 9.9e-19 66.6 0.1 3.4e-18 64.9 0.4 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain zinc_ribbon_10 PF10058.9 gi|336476725|ref|YP_004615866.1| - 0.018 14.8 1.4 0.037 13.7 1.4 1.5 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein M_domain PF12938.7 gi|336476725|ref|YP_004615866.1| - 0.019 14.8 1.8 0.033 14.0 1.8 1.4 1 0 0 1 1 1 0 M domain of GW182 zf-piccolo PF05715.13 gi|336476725|ref|YP_004615866.1| - 0.055 13.6 1.1 0.11 12.7 1.1 1.4 1 0 0 1 1 1 0 Piccolo Zn-finger Zn_Tnp_IS1595 PF12760.7 gi|336476725|ref|YP_004615866.1| - 0.18 11.8 1.0 0.33 11.0 1.0 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-RanBP PF00641.18 gi|336476725|ref|YP_004615866.1| - 7.7 5.9 7.5 11 5.5 1.5 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others HcyBio PF01837.16 gi|336476726|ref|YP_004615867.1| - 8.4e-108 360.3 0.0 9.6e-108 360.1 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4_9 PF13187.6 gi|336476726|ref|YP_004615867.1| - 5e-06 26.6 9.8 1e-05 25.6 9.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336476726|ref|YP_004615867.1| - 6.4e-05 22.9 10.2 0.029 14.5 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|336476726|ref|YP_004615867.1| - 7.1e-05 22.5 14.2 0.00019 21.1 2.2 3.2 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336476726|ref|YP_004615867.1| - 7.2e-05 22.8 12.2 0.00015 21.8 12.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476726|ref|YP_004615867.1| - 9.3e-05 22.5 8.4 0.0002 21.4 8.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476726|ref|YP_004615867.1| - 0.00019 21.9 12.1 0.0014 19.2 11.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476726|ref|YP_004615867.1| - 0.0022 18.0 12.3 0.069 13.3 2.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336476726|ref|YP_004615867.1| - 0.0047 17.3 3.2 0.0047 17.3 3.2 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|336476726|ref|YP_004615867.1| - 0.02 15.3 8.8 0.22 12.0 0.4 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336476726|ref|YP_004615867.1| - 0.091 13.7 9.2 0.17 12.8 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|336476726|ref|YP_004615867.1| - 1.4 9.6 14.3 1.9 9.1 1.4 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336476726|ref|YP_004615867.1| - 3.5 8.2 9.4 1.4 9.5 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|336476726|ref|YP_004615867.1| - 6.5 7.0 8.7 38 4.5 8.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain NigD_N PF12667.7 gi|336476727|ref|YP_004615868.1| - 0.019 15.0 0.8 3 8.0 0.0 2.9 3 0 0 3 3 3 0 NigD-like N-terminal OB domain AhpC-TSA PF00578.21 gi|336476728|ref|YP_004615869.1| - 2.5e-31 108.2 0.0 3.3e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|336476728|ref|YP_004615869.1| - 2.7e-11 43.4 0.0 1.4e-09 37.8 0.0 2.1 1 1 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|336476728|ref|YP_004615869.1| - 7e-09 35.4 0.0 1.2e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF4329 PF14220.6 gi|336476728|ref|YP_004615869.1| - 0.055 13.5 0.0 0.093 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4329) DUF1638 PF07796.11 gi|336476729|ref|YP_004615870.1| - 2.5e-40 138.2 0.0 3.1e-40 137.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) DUF1129 PF06570.11 gi|336476730|ref|YP_004615871.1| - 0.00093 18.7 1.8 0.00097 18.7 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1129) RseC_MucC PF04246.12 gi|336476730|ref|YP_004615871.1| - 0.0037 17.2 1.8 0.0037 17.2 1.8 1.0 1 0 0 1 1 1 1 Positive regulator of sigma(E), RseC/MucC MgtE PF01769.16 gi|336476730|ref|YP_004615871.1| - 0.011 16.2 1.6 0.011 16.1 1.6 1.0 1 0 0 1 1 1 0 Divalent cation transporter DUF4191 PF13829.6 gi|336476730|ref|YP_004615871.1| - 0.011 15.0 1.3 0.012 15.0 1.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) HOK_GEF PF01848.16 gi|336476730|ref|YP_004615871.1| - 0.017 14.5 1.9 0.017 14.5 1.9 2.0 2 0 0 2 2 2 0 Hok/gef family E1-E2_ATPase PF00122.20 gi|336476730|ref|YP_004615871.1| - 0.027 14.0 1.5 0.03 13.8 1.5 1.1 1 0 0 1 1 1 0 E1-E2 ATPase DUF4282 PF14110.6 gi|336476730|ref|YP_004615871.1| - 0.029 15.1 6.4 0.033 14.9 6.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF2207 PF09972.9 gi|336476730|ref|YP_004615871.1| - 0.031 13.0 2.6 0.033 13.0 2.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CPBP PF02517.16 gi|336476730|ref|YP_004615871.1| - 0.06 13.7 1.5 0.073 13.5 1.5 1.2 1 0 0 1 1 1 0 CPBP intramembrane metalloprotease COX2_TM PF02790.15 gi|336476730|ref|YP_004615871.1| - 0.9 9.7 7.8 1.1 9.5 1.2 2.0 1 1 1 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane domain FeoB_C PF07664.12 gi|336476730|ref|YP_004615871.1| - 2 8.2 11.7 2.2 8.1 4.1 2.1 1 1 1 2 2 2 0 Ferrous iron transport protein B C terminus DUF1656 PF07869.12 gi|336476730|ref|YP_004615871.1| - 3 7.9 9.3 0.77 9.8 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) FeoB_associated PF12669.7 gi|336476730|ref|YP_004615871.1| - 5.7 7.4 9.9 7.6 7.0 3.0 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein CMD PF02627.20 gi|336476731|ref|YP_004615872.1| - 3.4e-10 39.8 0.0 4.5e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Tho1_MOS11_C PF18592.1 gi|336476731|ref|YP_004615872.1| - 0.067 13.0 0.0 0.15 11.9 0.0 1.6 2 0 0 2 2 2 0 Tho1/MOS11 C-terminal domain Get5_C PF18514.1 gi|336476731|ref|YP_004615872.1| - 0.12 12.2 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Get5 C-terminal domain MinC_C PF03775.16 gi|336476732|ref|YP_004615873.1| - 0.054 13.5 0.0 0.094 12.7 0.0 1.5 1 0 0 1 1 1 0 Septum formation inhibitor MinC, C-terminal domain tRNA-synt_2b PF00587.25 gi|336476733|ref|YP_004615874.1| - 8.3e-27 94.3 0.0 1.4e-26 93.6 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|336476733|ref|YP_004615874.1| - 7.5e-20 70.9 0.1 1.4e-19 70.0 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|336476733|ref|YP_004615874.1| - 4.8e-13 49.1 0.4 2.2e-12 47.0 0.1 2.1 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal zf-ZPR1 PF03367.13 gi|336476734|ref|YP_004615875.1| - 1.6e-36 125.6 0.0 2e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain DUF3943 PF13084.6 gi|336476734|ref|YP_004615875.1| - 0.022 14.6 0.1 0.3 11.0 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3943) SepF PF04472.12 gi|336476735|ref|YP_004615876.1| - 8.5e-12 45.2 0.2 1.3e-11 44.6 0.2 1.3 1 0 0 1 1 1 1 Cell division protein SepF Transposase_31 PF04754.12 gi|336476735|ref|YP_004615876.1| - 0.02 14.5 0.0 0.028 14.0 0.0 1.3 1 1 0 1 1 1 0 Putative transposase, YhgA-like YopX PF09643.10 gi|336476735|ref|YP_004615876.1| - 0.053 13.6 0.1 0.062 13.4 0.1 1.2 1 0 0 1 1 1 0 YopX protein tRNA-synt_1 PF00133.22 gi|336476736|ref|YP_004615877.1| - 1.7e-195 650.8 6.3 2.3e-195 650.4 6.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|336476736|ref|YP_004615877.1| - 4.1e-35 121.0 0.4 1.1e-34 119.7 0.4 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|336476736|ref|YP_004615877.1| - 1.6e-25 89.7 6.6 7.3e-13 48.0 0.7 3.8 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|336476736|ref|YP_004615877.1| - 5.3e-06 26.0 0.0 1.1e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|336476736|ref|YP_004615877.1| - 0.002 17.1 0.0 0.0078 15.2 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|336476736|ref|YP_004615877.1| - 0.006 16.1 0.1 0.023 14.2 0.1 2.0 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 MAF_flag10 PF01973.18 gi|336476737|ref|YP_004615878.1| - 1.1e-28 100.0 0.0 1.5e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|336476737|ref|YP_004615878.1| - 0.0039 17.2 0.1 0.0067 16.5 0.1 1.4 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain DUF373 PF04123.13 gi|336476738|ref|YP_004615879.1| - 4.7e-122 407.6 13.5 5.5e-122 407.4 13.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) PNP_UDP_1 PF01048.20 gi|336476739|ref|YP_004615880.1| - 2.3e-46 157.9 0.0 2.6e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily ATPase PF06745.13 gi|336476740|ref|YP_004615881.1| - 3.3e-12 46.2 0.3 4.2e-12 45.9 0.3 1.1 1 0 0 1 1 1 1 KaiC DEAD PF00270.29 gi|336476741|ref|YP_004615882.1| - 1.3e-22 80.4 0.0 2.9e-22 79.3 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|336476741|ref|YP_004615882.1| - 1.8e-15 57.2 0.0 5.7e-15 55.6 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|336476741|ref|YP_004615882.1| - 5.9e-09 36.2 0.0 1.8e-08 34.6 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|336476741|ref|YP_004615882.1| - 0.0093 14.7 0.0 0.014 14.1 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3467 PF11950.8 gi|336476742|ref|YP_004615883.1| - 3.1e-17 62.5 0.0 3.7e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) LSM PF01423.22 gi|336476743|ref|YP_004615884.1| - 2.3e-18 65.7 0.6 3.5e-18 65.1 0.6 1.3 1 0 0 1 1 1 1 LSM domain RRF PF01765.19 gi|336476743|ref|YP_004615884.1| - 0.1 12.5 0.5 2.6 8.0 0.0 2.0 2 0 0 2 2 2 0 Ribosome recycling factor SM-ATX PF14438.6 gi|336476743|ref|YP_004615884.1| - 0.11 12.6 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Ataxin 2 SM domain B-block_TFIIIC PF04182.12 gi|336476744|ref|YP_004615885.1| - 7.3e-06 26.1 0.1 1e-05 25.6 0.1 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|336476744|ref|YP_004615885.1| - 0.00095 19.0 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|336476744|ref|YP_004615885.1| - 0.013 15.9 0.1 0.021 15.3 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|336476744|ref|YP_004615885.1| - 0.019 14.8 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 MarR family CtsR_C PF17727.1 gi|336476744|ref|YP_004615885.1| - 0.083 13.0 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 CtsR C-terminal dimerization domain HAS-barrel PF09378.10 gi|336476745|ref|YP_004615886.1| - 0.046 13.9 0.0 0.05 13.8 0.0 1.2 1 0 0 1 1 1 0 HAS barrel domain TPR_1 PF00515.28 gi|336476746|ref|YP_004615887.1| - 2.1e-11 43.1 0.3 4.2e-08 32.7 0.0 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|336476746|ref|YP_004615887.1| - 2.7e-10 39.5 0.2 7.1e-05 22.6 0.0 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|336476746|ref|YP_004615887.1| - 6e-07 29.2 0.6 6.3e-05 22.9 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|336476746|ref|YP_004615887.1| - 2.3e-06 27.9 0.0 0.014 16.1 0.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|336476746|ref|YP_004615887.1| - 1.3e-05 25.2 0.0 2.3e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|336476746|ref|YP_004615887.1| - 4.3e-05 23.7 0.6 0.019 15.2 0.1 2.3 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|336476746|ref|YP_004615887.1| - 5.6e-05 22.9 0.0 0.024 14.6 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|336476746|ref|YP_004615887.1| - 9.7e-05 22.0 0.0 0.5 10.1 0.0 2.5 1 1 1 2 2 2 2 TPR repeat Fis1_TPR_C PF14853.6 gi|336476746|ref|YP_004615887.1| - 0.00083 19.4 0.1 0.059 13.5 0.0 2.5 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat TPR_19 PF14559.6 gi|336476746|ref|YP_004615887.1| - 0.0011 19.5 0.0 0.19 12.3 0.0 2.1 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|336476746|ref|YP_004615887.1| - 0.018 15.7 0.0 0.042 14.5 0.0 1.7 1 1 0 1 1 1 0 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|336476746|ref|YP_004615887.1| - 0.027 14.5 0.1 0.072 13.2 0.1 1.8 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 TPR_6 PF13174.6 gi|336476746|ref|YP_004615887.1| - 0.034 14.8 0.0 0.22 12.2 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat RPN7 PF10602.9 gi|336476746|ref|YP_004615887.1| - 0.053 13.2 0.2 1.5 8.5 0.1 2.4 1 1 1 2 2 2 0 26S proteasome subunit RPN7 MIT PF04212.18 gi|336476746|ref|YP_004615887.1| - 0.15 12.2 0.3 1.4 9.1 0.0 2.4 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain DDE_Tnp_1 PF01609.21 gi|336476747|ref|YP_004615888.1| - 2e-06 27.6 3.9 4.6e-06 26.4 3.9 1.6 1 1 0 1 1 1 1 Transposase DDE domain FKBP_C PF00254.28 gi|336476748|ref|YP_004615889.1| - 7.7e-21 74.2 0.1 9e-21 74.0 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Y1_Tnp PF01797.16 gi|336476750|ref|YP_004615891.1| - 9.3e-33 112.9 3.5 1.1e-32 112.7 3.5 1.0 1 0 0 1 1 1 1 Transposase IS200 like POC3_POC4 PF10448.9 gi|336476750|ref|YP_004615891.1| - 0.012 15.7 0.0 0.014 15.4 0.0 1.3 1 1 0 1 1 1 0 20S proteasome chaperone assembly proteins 3 and 4 OrfB_IS605 PF01385.19 gi|336476751|ref|YP_004615892.1| - 6.5e-27 94.1 1.3 1.1e-26 93.4 1.3 1.3 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|336476751|ref|YP_004615892.1| - 2.2e-21 75.1 1.4 4.7e-21 74.0 1.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|336476751|ref|YP_004615892.1| - 9.9e-21 73.5 0.2 2.6e-20 72.1 0.1 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-piccolo PF05715.13 gi|336476751|ref|YP_004615892.1| - 0.015 15.5 0.7 0.031 14.4 0.7 1.5 1 0 0 1 1 1 0 Piccolo Zn-finger Mer2 PF09074.10 gi|336476751|ref|YP_004615892.1| - 0.096 12.5 3.8 0.17 11.7 3.8 1.3 1 0 0 1 1 1 0 Mer2 zinc_ribbon_10 PF10058.9 gi|336476751|ref|YP_004615892.1| - 0.15 11.8 1.3 0.64 9.8 1.9 1.7 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-RanBP PF00641.18 gi|336476751|ref|YP_004615892.1| - 0.21 10.9 4.5 2.4 7.5 0.4 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others TMPIT PF07851.13 gi|336476751|ref|YP_004615892.1| - 0.38 9.9 2.7 0.6 9.3 2.7 1.2 1 0 0 1 1 1 0 TMPIT-like protein UPF0016 PF01169.19 gi|336476752|ref|YP_004615893.1| - 3.2e-40 136.3 21.3 1.2e-22 80.0 7.1 2.0 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 TauE PF01925.19 gi|336476752|ref|YP_004615893.1| - 3.8e-06 26.7 12.9 0.00045 19.9 2.2 2.2 2 0 0 2 2 2 2 Sulfite exporter TauE/SafE TerC PF03741.16 gi|336476752|ref|YP_004615893.1| - 0.00042 20.1 13.9 0.0008 19.1 13.9 1.5 1 1 0 1 1 1 1 Integral membrane protein TerC family EI24 PF07264.11 gi|336476752|ref|YP_004615893.1| - 0.02 15.1 0.6 0.02 15.1 0.6 2.2 1 1 1 2 2 2 0 Etoposide-induced protein 2.4 (EI24) ABC2_membrane_5 PF13346.6 gi|336476752|ref|YP_004615893.1| - 0.22 11.0 19.1 0.37 10.3 1.7 2.2 2 0 0 2 2 2 0 ABC-2 family transporter protein DsbD_2 PF13386.6 gi|336476752|ref|YP_004615893.1| - 1 9.2 14.5 0.91 9.4 3.6 2.1 1 1 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region DUF2070 PF09843.9 gi|336476752|ref|YP_004615893.1| - 1.3 7.2 12.7 1.6 7.0 12.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) UPF0259 PF06790.11 gi|336476753|ref|YP_004615894.1| - 0.011 15.5 19.9 0.011 15.5 19.9 3.0 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0259) Methyltransf_11 PF08241.12 gi|336476754|ref|YP_004615895.1| - 2.6e-22 79.3 0.0 3.7e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336476754|ref|YP_004615895.1| - 2.7e-18 66.5 0.0 4.4e-18 65.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336476754|ref|YP_004615895.1| - 3e-17 62.9 0.0 3.6e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336476754|ref|YP_004615895.1| - 6.9e-15 55.0 0.2 1.4e-14 54.1 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|336476754|ref|YP_004615895.1| - 2.3e-14 53.9 0.0 3.4e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336476754|ref|YP_004615895.1| - 1.3e-13 51.0 0.0 1.7e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|336476754|ref|YP_004615895.1| - 0.00079 19.1 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.14 gi|336476754|ref|YP_004615895.1| - 0.0027 17.1 0.0 0.0037 16.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB tRNA_NucTransf2 PF09249.11 gi|336476757|ref|YP_004615898.1| - 3.3e-44 149.7 0.0 7.7e-44 148.6 0.0 1.7 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|336476757|ref|YP_004615898.1| - 9.6e-12 45.0 0.4 3.8e-11 43.1 0.0 2.2 2 1 0 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|336476757|ref|YP_004615898.1| - 1.6e-05 25.1 0.0 3.5e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain zf-RRN7 PF11781.8 gi|336476757|ref|YP_004615898.1| - 0.29 10.8 0.6 0.62 9.8 0.6 1.5 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 OGG_N PF07934.12 gi|336476758|ref|YP_004615899.1| - 1.6e-19 70.1 0.2 4e-18 65.6 0.2 2.5 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.25 gi|336476758|ref|YP_004615899.1| - 1.4e-07 31.9 0.0 2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|336476758|ref|YP_004615899.1| - 0.00032 20.4 0.0 0.00065 19.4 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|336476758|ref|YP_004615899.1| - 0.028 15.0 0.0 0.85 10.3 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|336476758|ref|YP_004615899.1| - 0.098 12.8 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif ADP_PFK_GK PF04587.15 gi|336476759|ref|YP_004615900.1| - 3.5e-102 342.1 0.1 4e-102 341.9 0.1 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ADP_PFK_GK PF04587.15 gi|336476760|ref|YP_004615901.1| - 1.8e-117 392.5 0.1 2e-117 392.3 0.1 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ArgJ PF01960.18 gi|336476761|ref|YP_004615902.1| - 9e-135 449.2 8.9 1.1e-134 449.0 8.9 1.0 1 0 0 1 1 1 1 ArgJ family CBS PF00571.28 gi|336476762|ref|YP_004615903.1| - 1.3e-34 118.5 4.4 3.4e-17 62.6 0.4 2.6 3 0 0 3 3 3 2 CBS domain MreC PF04085.14 gi|336476762|ref|YP_004615903.1| - 0.058 13.3 0.1 5.9 6.8 0.0 2.3 2 0 0 2 2 2 0 rod shape-determining protein MreC Semialdhyde_dh PF01118.24 gi|336476763|ref|YP_004615904.1| - 1.7e-32 112.4 0.0 2.6e-32 111.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|336476763|ref|YP_004615904.1| - 1.1e-20 74.5 0.0 1.8e-20 73.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.17 gi|336476763|ref|YP_004615904.1| - 0.00013 22.5 0.0 0.00025 21.5 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|336476763|ref|YP_004615904.1| - 0.027 15.3 0.0 0.055 14.3 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|336476763|ref|YP_004615904.1| - 0.11 12.6 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Abhydrolase_1 PF00561.20 gi|336476764|ref|YP_004615905.1| - 2.3e-37 129.0 0.1 2.9e-37 128.7 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold CBS PF00571.28 gi|336476764|ref|YP_004615905.1| - 4.2e-24 84.8 2.4 2.4e-12 47.1 0.5 2.6 2 0 0 2 2 2 2 CBS domain Hydrolase_4 PF12146.8 gi|336476764|ref|YP_004615905.1| - 0.00017 21.0 0.0 0.0014 18.0 0.0 2.0 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|336476764|ref|YP_004615905.1| - 0.071 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Kelch_1 PF01344.25 gi|336476764|ref|YP_004615905.1| - 1.5 8.4 5.8 2.2 7.9 0.1 2.9 3 0 0 3 3 3 0 Kelch motif Cys_Met_Meta_PP PF01053.20 gi|336476765|ref|YP_004615906.1| - 2.3e-142 474.1 0.0 2.6e-142 473.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|336476765|ref|YP_004615906.1| - 7.8e-08 31.9 0.0 1.2e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|336476765|ref|YP_004615906.1| - 9e-08 31.8 0.1 1.6e-07 31.0 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|336476765|ref|YP_004615906.1| - 1.6e-07 30.7 0.2 2.3e-07 30.1 0.2 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|336476765|ref|YP_004615906.1| - 0.00033 20.0 0.0 0.00056 19.3 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Met_gamma_lyase PF06838.11 gi|336476765|ref|YP_004615906.1| - 0.0011 17.6 2.1 0.026 13.1 2.1 2.1 1 1 0 1 1 1 1 Methionine gamma-lyase GDC-P PF02347.16 gi|336476765|ref|YP_004615906.1| - 0.036 12.9 0.0 0.05 12.4 0.0 1.1 1 0 0 1 1 1 0 Glycine cleavage system P-protein Nuc_deoxyrib_tr PF05014.15 gi|336476766|ref|YP_004615907.1| - 1.4e-28 99.5 0.0 1.6e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|336476766|ref|YP_004615907.1| - 6.4e-19 68.3 0.0 7.8e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like TIR_2 PF13676.6 gi|336476766|ref|YP_004615907.1| - 0.0035 17.9 0.0 0.0062 17.1 0.0 1.5 1 1 0 1 1 1 1 TIR domain GrpE PF01025.19 gi|336476766|ref|YP_004615907.1| - 0.066 12.9 0.2 0.12 12.0 0.2 1.4 1 0 0 1 1 1 0 GrpE LDcluster4 PF18306.1 gi|336476766|ref|YP_004615907.1| - 0.12 11.9 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 SLOG cluster4 family AMMECR1 PF01871.17 gi|336476767|ref|YP_004615908.1| - 9.7e-51 171.7 0.0 1.1e-50 171.5 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 OrfB_IS605 PF01385.19 gi|336476768|ref|YP_004615909.1| - 1.2e-26 93.2 1.4 2.5e-26 92.3 1.4 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|336476768|ref|YP_004615909.1| - 4.4e-21 74.6 0.4 9e-21 73.6 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|336476768|ref|YP_004615909.1| - 9.6e-19 66.6 0.1 3.4e-18 64.9 0.4 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain zinc_ribbon_10 PF10058.9 gi|336476768|ref|YP_004615909.1| - 0.018 14.8 1.4 0.037 13.7 1.4 1.5 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein M_domain PF12938.7 gi|336476768|ref|YP_004615909.1| - 0.018 14.8 2.4 0.031 14.1 2.4 1.4 1 0 0 1 1 1 0 M domain of GW182 zf-piccolo PF05715.13 gi|336476768|ref|YP_004615909.1| - 0.055 13.6 1.1 0.11 12.7 1.1 1.4 1 0 0 1 1 1 0 Piccolo Zn-finger Zn_Tnp_IS1595 PF12760.7 gi|336476768|ref|YP_004615909.1| - 0.18 11.8 1.0 0.33 11.0 1.0 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-RanBP PF00641.18 gi|336476768|ref|YP_004615909.1| - 7.7 5.9 7.5 11 5.5 1.5 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others PGK PF00162.19 gi|336476769|ref|YP_004615910.1| - 4.5e-108 361.6 0.4 5.2e-108 361.4 0.4 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DRTGG PF07085.12 gi|336476770|ref|YP_004615911.1| - 3.3e-32 110.4 0.1 7.6e-32 109.2 0.1 1.7 1 0 0 1 1 1 1 DRTGG domain AAA_26 PF13500.6 gi|336476770|ref|YP_004615911.1| - 3.1e-31 108.7 0.0 8.1e-31 107.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain Hpr_kinase_N PF02603.16 gi|336476770|ref|YP_004615911.1| - 0.00057 19.9 0.0 0.0014 18.7 0.0 1.8 1 0 0 1 1 1 1 HPr Serine kinase N terminus CbiA PF01656.23 gi|336476770|ref|YP_004615911.1| - 0.0018 18.3 0.0 0.013 15.6 0.0 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ATP-grasp_5 PF13549.6 gi|336476771|ref|YP_004615912.1| - 1e-76 257.3 0.0 1.6e-76 256.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|336476771|ref|YP_004615912.1| - 4.6e-53 178.7 0.6 7.1e-52 174.9 0.2 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|336476771|ref|YP_004615912.1| - 1.5e-25 90.0 0.0 4.4e-25 88.4 0.0 1.9 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|336476771|ref|YP_004615912.1| - 1.8e-13 51.0 0.2 6.5e-13 49.2 0.2 2.0 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|336476771|ref|YP_004615912.1| - 0.036 14.9 0.3 0.13 13.1 0.0 2.0 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Ligase_CoA PF00549.19 gi|336476771|ref|YP_004615912.1| - 0.098 12.5 0.0 0.44 10.4 0.0 2.0 2 0 0 2 2 2 0 CoA-ligase FMN_red PF03358.15 gi|336476772|ref|YP_004615913.1| - 3.5e-38 130.8 0.0 4.5e-38 130.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|336476772|ref|YP_004615913.1| - 2.5e-13 50.2 0.0 3.5e-13 49.7 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|336476772|ref|YP_004615913.1| - 0.0061 16.8 0.0 0.0091 16.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain GSDH PF07995.11 gi|336476773|ref|YP_004615914.1| - 5.7e-86 288.8 0.0 7.6e-86 288.4 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Reg_prop PF07494.11 gi|336476773|ref|YP_004615914.1| - 0.089 13.1 1.1 99 3.7 0.1 4.4 3 0 0 3 3 3 0 Two component regulator propeller DUF2973 PF11189.8 gi|336476773|ref|YP_004615914.1| - 2.1 8.5 4.1 1.4 9.1 0.2 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2973) ACT_6 PF13740.6 gi|336476774|ref|YP_004615915.1| - 5.3e-15 55.2 0.2 6.1e-15 55.0 0.2 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|336476774|ref|YP_004615915.1| - 5.3e-09 35.7 0.5 7.4e-09 35.2 0.5 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|336476774|ref|YP_004615915.1| - 6.7e-06 26.6 1.3 8.5e-06 26.3 0.6 1.5 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|336476774|ref|YP_004615915.1| - 0.0021 17.8 0.9 0.0031 17.3 0.9 1.2 1 0 0 1 1 1 1 ACT domain DUF711 PF05167.12 gi|336476775|ref|YP_004615916.1| - 3e-180 599.4 10.1 3.7e-180 599.1 10.1 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Red1 PF07964.11 gi|336476775|ref|YP_004615916.1| - 0.018 13.3 0.1 0.025 12.9 0.1 1.1 1 0 0 1 1 1 0 Rec10 / Red1 Sigma70_r3 PF04539.16 gi|336476775|ref|YP_004615916.1| - 0.16 12.1 0.0 0.39 10.8 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 HIT PF01230.23 gi|336476777|ref|YP_004615918.1| - 2.3e-27 95.6 0.0 2.8e-27 95.3 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|336476777|ref|YP_004615918.1| - 6.6e-14 52.4 0.0 8.2e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|336476777|ref|YP_004615918.1| - 0.0004 20.2 0.0 0.00053 19.8 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF4177 PF13783.6 gi|336476778|ref|YP_004615919.1| - 0.00066 19.9 0.1 0.00094 19.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) HisKA_2 PF07568.12 gi|336476779|ref|YP_004615920.1| - 1.2e-21 76.5 1.8 1.2e-21 76.5 1.8 2.6 2 0 0 2 2 2 1 Histidine kinase HWE_HK PF07536.14 gi|336476779|ref|YP_004615920.1| - 1e-07 32.5 0.1 2e-07 31.6 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_9 PF13426.7 gi|336476779|ref|YP_004615920.1| - 2.7e-06 27.6 0.6 6e-06 26.5 0.6 1.6 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|336476779|ref|YP_004615920.1| - 1.6e-05 24.8 0.0 4.6e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|336476779|ref|YP_004615920.1| - 0.00015 21.7 0.4 0.00067 19.6 0.1 2.3 2 1 0 2 2 2 1 PAS fold UPF0004 PF00919.20 gi|336476780|ref|YP_004615921.1| - 2.1e-22 79.0 1.5 3.9e-22 78.1 1.5 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|336476780|ref|YP_004615921.1| - 7.7e-20 71.9 0.0 2.6e-19 70.2 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.20 gi|336476780|ref|YP_004615921.1| - 0.0024 17.8 0.0 0.0051 16.8 0.0 1.6 1 0 0 1 1 1 1 TRAM domain FBPase_glpX PF03320.13 gi|336476781|ref|YP_004615922.1| - 6.6e-120 399.6 6.6 7.8e-120 399.4 6.6 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CGI-121 PF08617.10 gi|336476782|ref|YP_004615923.1| - 6.5e-12 45.9 1.3 7.6e-12 45.7 1.3 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 BRCT_assoc PF12820.7 gi|336476782|ref|YP_004615923.1| - 0.002 18.0 0.4 0.016 15.1 0.1 2.0 1 1 1 2 2 2 1 Serine-rich domain associated with BRCT FAM91_C PF14648.6 gi|336476782|ref|YP_004615923.1| - 0.058 12.2 0.1 0.058 12.2 0.1 1.1 1 0 0 1 1 1 0 FAM91 C-terminus PALP PF00291.25 gi|336476783|ref|YP_004615924.1| - 6.6e-83 278.5 2.9 7.6e-83 278.3 2.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme tRNA-synt_1 PF00133.22 gi|336476784|ref|YP_004615925.1| - 5.2e-62 210.0 2.9 1.1e-42 146.2 0.2 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|336476784|ref|YP_004615925.1| - 1.5e-28 99.7 1.3 1.2e-12 47.3 0.0 3.3 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|336476784|ref|YP_004615925.1| - 2e-16 60.3 0.4 5.2e-16 59.0 0.4 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|336476784|ref|YP_004615925.1| - 1.3e-11 44.4 2.1 1.5e-07 31.1 0.0 3.2 4 0 0 4 4 4 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|336476784|ref|YP_004615925.1| - 4.8e-08 32.7 0.0 1e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|336476784|ref|YP_004615925.1| - 0.0061 15.5 2.0 0.0075 15.2 0.1 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) YxiJ PF14176.6 gi|336476784|ref|YP_004615925.1| - 0.18 12.3 1.2 0.77 10.3 0.0 2.6 3 0 0 3 3 3 0 YxiJ-like protein CN_hydrolase PF00795.22 gi|336476785|ref|YP_004615926.1| - 1.1e-53 182.2 0.0 1.4e-53 182.0 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF4834 PF16118.5 gi|336476786|ref|YP_004615927.1| - 0.018 16.0 0.1 0.022 15.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) DUF4328 PF14219.6 gi|336476786|ref|YP_004615927.1| - 0.078 12.5 0.0 0.079 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4328) EphA2_TM PF14575.6 gi|336476786|ref|YP_004615927.1| - 0.12 13.2 0.0 0.14 13.0 0.0 1.1 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain DJ-1_PfpI PF01965.24 gi|336476788|ref|YP_004615929.1| - 7e-37 126.8 0.2 8.4e-37 126.5 0.2 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|336476788|ref|YP_004615929.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.4 1 1 0 1 1 1 0 ThiJ/PfpI family-like DUF2124 PF09897.9 gi|336476788|ref|YP_004615929.1| - 0.016 15.1 0.1 0.023 14.6 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) Q_salvage PF10343.9 gi|336476788|ref|YP_004615929.1| - 0.065 12.8 0.1 0.081 12.5 0.1 1.3 1 1 0 1 1 1 0 Potential Queuosine, Q, salvage protein family DUF2117 PF09890.9 gi|336476789|ref|YP_004615930.1| - 6.2e-69 231.7 0.0 9e-69 231.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) PAS_3 PF08447.12 gi|336476790|ref|YP_004615931.1| - 4.4e-34 116.6 0.6 1.6e-13 50.7 0.1 3.4 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|336476790|ref|YP_004615931.1| - 7.7e-30 103.7 0.2 1.7e-29 102.6 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|336476790|ref|YP_004615931.1| - 5.1e-15 55.3 0.3 1.5e-14 53.8 0.3 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|336476790|ref|YP_004615931.1| - 3.3e-09 36.5 0.6 7.7e-07 29.0 0.0 3.0 3 0 0 3 3 3 1 PAS domain PAS PF00989.25 gi|336476790|ref|YP_004615931.1| - 3.1e-07 30.4 0.1 4.6e-06 26.6 0.0 2.8 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.7 gi|336476790|ref|YP_004615931.1| - 4e-07 30.2 0.7 7.5e-05 22.9 0.0 3.4 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.6 gi|336476790|ref|YP_004615931.1| - 0.0019 18.0 0.1 0.0058 16.5 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|336476790|ref|YP_004615931.1| - 0.0033 17.3 4.1 0.0057 16.5 0.5 2.8 2 0 0 2 2 2 1 GHKL domain PAS_7 PF12860.7 gi|336476790|ref|YP_004615931.1| - 0.0036 17.5 0.5 0.055 13.6 0.2 2.6 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|336476790|ref|YP_004615931.1| - 0.05 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain LMBR1 PF04791.16 gi|336476790|ref|YP_004615931.1| - 0.061 12.2 0.8 0.077 11.9 0.8 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein PAS_4 PF08448.10 gi|336476790|ref|YP_004615931.1| - 0.12 12.6 0.0 1.1 9.5 0.0 2.3 2 0 0 2 2 2 0 PAS fold RuBisCO_small PF00101.20 gi|336476790|ref|YP_004615931.1| - 0.13 12.3 0.1 0.77 9.8 0.0 2.2 2 0 0 2 2 2 0 Ribulose bisphosphate carboxylase, small chain eIF-1a PF01176.19 gi|336476791|ref|YP_004615932.1| - 6.3e-16 57.9 0.2 9.3e-16 57.4 0.2 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Fez1 PF06818.15 gi|336476792|ref|YP_004615933.1| - 0.0088 16.5 10.5 0.0088 16.5 10.5 3.3 2 1 1 3 3 3 1 Fez1 Filament PF00038.21 gi|336476792|ref|YP_004615933.1| - 0.012 15.2 35.3 0.16 11.6 8.5 3.9 3 1 1 4 4 4 0 Intermediate filament protein DUF3412 PF11892.8 gi|336476792|ref|YP_004615933.1| - 0.017 15.2 1.0 1.6 8.8 0.1 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF3412) Baculo_PEP_C PF04513.12 gi|336476792|ref|YP_004615933.1| - 0.083 12.9 17.8 0.53 10.3 1.0 4.3 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus WXG100 PF06013.12 gi|336476792|ref|YP_004615933.1| - 0.094 13.0 7.8 33 4.8 1.0 5.4 5 1 0 5 5 4 0 Proteins of 100 residues with WXG TPR_MLP1_2 PF07926.12 gi|336476792|ref|YP_004615933.1| - 0.31 11.1 36.6 0.26 11.3 8.7 4.1 3 1 0 3 3 3 0 TPR/MLP1/MLP2-like protein AAA_13 PF13166.6 gi|336476792|ref|YP_004615933.1| - 0.36 9.4 34.3 0.059 12.0 20.0 2.8 2 1 0 2 2 2 0 AAA domain OEP PF02321.18 gi|336476792|ref|YP_004615933.1| - 0.46 10.3 12.4 0.38 10.5 1.8 2.8 3 0 0 3 3 3 0 Outer membrane efflux protein DUF1664 PF07889.12 gi|336476792|ref|YP_004615933.1| - 0.87 9.6 28.0 0.17 11.9 0.9 4.8 2 1 3 6 6 6 0 Protein of unknown function (DUF1664) DUF2730 PF10805.8 gi|336476792|ref|YP_004615933.1| - 2.3 8.4 23.3 0.052 13.7 2.2 4.9 3 2 2 5 5 5 0 Protein of unknown function (DUF2730) Allexi_40kDa PF05549.11 gi|336476792|ref|YP_004615933.1| - 4.5 6.7 25.2 0.51 9.8 5.7 3.3 3 1 0 3 3 3 0 Allexivirus 40kDa protein FapA PF03961.13 gi|336476792|ref|YP_004615933.1| - 5.1 5.6 41.3 0.056 12.1 9.9 3.4 3 0 0 3 3 3 0 Flagellar Assembly Protein A Plasmid_RAQPRD PF09686.10 gi|336476792|ref|YP_004615933.1| - 5.3 7.3 6.7 45 4.4 0.2 4.2 3 1 1 4 4 4 0 Plasmid protein of unknown function (Plasmid_RAQPRD) DUF1411 PF07199.11 gi|336476792|ref|YP_004615933.1| - 5.4 6.6 12.9 5.2 6.7 1.2 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1411) DUF948 PF06103.11 gi|336476792|ref|YP_004615933.1| - 5.8 7.2 12.8 19 5.6 0.1 4.8 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) DUF2203 PF09969.9 gi|336476792|ref|YP_004615933.1| - 5.9 7.6 24.6 6.5 7.5 5.6 4.7 3 2 0 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF883 PF05957.13 gi|336476792|ref|YP_004615933.1| - 6.5 7.4 14.8 0.7 10.5 0.1 4.8 3 2 1 4 4 4 0 Bacterial protein of unknown function (DUF883) TipAS PF07739.13 gi|336476792|ref|YP_004615933.1| - 6.5 7.3 15.8 7.8 7.1 0.2 4.6 3 3 3 6 6 6 0 TipAS antibiotic-recognition domain Laminin_II PF06009.12 gi|336476792|ref|YP_004615933.1| - 6.7 6.7 32.9 0.69 9.9 0.7 5.4 3 2 2 5 5 5 0 Laminin Domain II MCR_beta PF02241.18 gi|336476793|ref|YP_004615934.1| - 2.5e-133 443.3 7.2 2.5e-133 443.3 7.2 1.5 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|336476793|ref|YP_004615934.1| - 3.3e-83 277.8 3.6 3.3e-83 277.8 3.6 1.5 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.14 gi|336476794|ref|YP_004615935.1| - 8.6e-57 191.0 0.0 9.8e-57 190.8 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_C PF04609.12 gi|336476795|ref|YP_004615936.1| - 7.9e-09 35.0 0.8 1.1e-08 34.5 0.8 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_gamma PF02240.16 gi|336476796|ref|YP_004615937.1| - 3e-123 409.9 0.1 3.4e-123 409.7 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.15 gi|336476797|ref|YP_004615938.1| - 4.8e-148 491.8 0.2 6.1e-148 491.4 0.2 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|336476797|ref|YP_004615938.1| - 1.3e-65 219.6 4.5 3.3e-65 218.3 4.5 1.7 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain EPSP_synthase PF00275.20 gi|336476798|ref|YP_004615939.1| - 1.2e-115 386.6 0.4 1.4e-115 386.3 0.4 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thymidylat_synt PF00303.19 gi|336476799|ref|YP_004615940.1| - 3.1e-23 82.2 0.1 4.1e-23 81.9 0.1 1.2 1 0 0 1 1 1 1 Thymidylate synthase Corona_S2 PF01601.16 gi|336476799|ref|YP_004615940.1| - 0.02 13.4 1.0 0.027 13.0 1.0 1.1 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein BNR_6 PF15899.5 gi|336476799|ref|YP_004615940.1| - 0.051 13.6 0.0 0.17 12.1 0.0 1.9 1 0 0 1 1 1 0 BNR-Asp box repeat Ribosomal_L13e PF01294.18 gi|336476799|ref|YP_004615940.1| - 0.074 12.9 0.1 0.1 12.5 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L13e Peptidase_M48 PF01435.18 gi|336476800|ref|YP_004615941.1| - 1.5e-37 129.3 0.2 2.3e-37 128.7 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|336476800|ref|YP_004615941.1| - 5.3e-05 22.6 0.3 0.00011 21.6 0.2 1.6 1 1 0 1 1 1 1 BlaR1 peptidase M56 BSP PF04450.12 gi|336476800|ref|YP_004615941.1| - 0.045 13.5 0.0 0.062 13.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria TM231 PF10149.9 gi|336476801|ref|YP_004615942.1| - 0.083 12.2 0.0 0.092 12.1 0.0 1.1 1 0 0 1 1 1 0 Transmembrane protein 231 Lipoprotein_3 PF00938.17 gi|336476802|ref|YP_004615943.1| - 0.45 10.7 3.2 2.5 8.3 0.2 2.8 3 0 0 3 3 3 0 Lipoprotein Med28 PF11594.8 gi|336476802|ref|YP_004615943.1| - 1.7 8.7 7.2 3.8 7.6 1.0 2.9 1 1 0 2 2 2 0 Mediator complex subunit 28 Activator-TraM PF11657.8 gi|336476803|ref|YP_004615944.1| - 0.048 13.5 6.5 0.097 12.5 0.5 3.1 2 1 1 3 3 3 0 Transcriptional activator TraM MarR PF01047.22 gi|336476804|ref|YP_004615945.1| - 1.3e-06 28.2 0.1 2.1e-06 27.5 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|336476804|ref|YP_004615945.1| - 3.8e-05 23.2 0.2 6.4e-05 22.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336476804|ref|YP_004615945.1| - 0.00036 20.4 0.0 0.00058 19.7 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|336476804|ref|YP_004615945.1| - 0.0012 19.0 0.1 0.0019 18.3 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|336476804|ref|YP_004615945.1| - 0.0012 18.8 0.1 0.0021 18.0 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Ni_hydr_CYTB PF01292.20 gi|336476804|ref|YP_004615945.1| - 0.0012 18.5 0.2 0.016 14.8 0.2 2.0 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 HTH_IclR PF09339.10 gi|336476804|ref|YP_004615945.1| - 0.0027 17.5 0.0 0.0064 16.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|336476804|ref|YP_004615945.1| - 0.0079 16.1 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|336476804|ref|YP_004615945.1| - 0.012 16.0 0.1 0.023 15.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain SpoIIIAH PF12685.7 gi|336476804|ref|YP_004615945.1| - 0.02 14.7 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein Phage_Gp23 PF10669.9 gi|336476804|ref|YP_004615945.1| - 0.036 14.4 0.1 0.036 14.4 0.1 2.0 2 1 0 2 2 2 0 Protein gp23 (Bacteriophage A118) CarboxypepD_reg PF13620.6 gi|336476804|ref|YP_004615945.1| - 0.051 13.8 0.0 0.09 13.1 0.0 1.4 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain Rrf2 PF02082.20 gi|336476804|ref|YP_004615945.1| - 0.067 13.5 0.1 0.17 12.3 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator Ac76 PF05814.11 gi|336476804|ref|YP_004615945.1| - 0.089 12.8 0.1 0.39 10.8 0.0 2.0 2 0 0 2 2 2 0 Orf76 (Ac76) HicB-like_2 PF15970.5 gi|336476804|ref|YP_004615945.1| - 0.12 12.5 0.1 2.9 8.1 0.1 2.4 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system HTH_53 PF18606.1 gi|336476804|ref|YP_004615945.1| - 0.18 11.5 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 Zap helix turn helix N-terminal domain DUF881 PF05949.12 gi|336476805|ref|YP_004615946.1| - 0.074 12.9 0.3 0.46 10.4 0.1 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF881) Homoserine_dh PF00742.19 gi|336476806|ref|YP_004615947.1| - 1.4e-55 187.8 0.5 3e-55 186.8 0.1 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|336476806|ref|YP_004615947.1| - 4.1e-11 43.6 0.8 8.2e-11 42.6 0.3 1.8 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|336476806|ref|YP_004615947.1| - 3.8e-06 26.8 0.4 8.8e-06 25.6 0.4 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|336476806|ref|YP_004615947.1| - 0.0016 18.7 0.5 0.0044 17.3 0.5 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DXP_reductoisom PF02670.16 gi|336476806|ref|YP_004615947.1| - 0.07 13.8 0.1 0.17 12.6 0.1 1.7 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Gp_dh_N PF00044.24 gi|336476806|ref|YP_004615947.1| - 0.23 11.8 1.2 1.2 9.6 1.2 2.1 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DNA_ligase_A_M PF01068.21 gi|336476807|ref|YP_004615948.1| - 2.3e-58 197.2 0.1 3.7e-58 196.5 0.1 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|336476807|ref|YP_004615948.1| - 7.4e-36 124.1 0.0 1.3e-35 123.3 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|336476807|ref|YP_004615948.1| - 4.5e-17 62.5 0.0 2.1e-16 60.3 0.0 2.2 2 1 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|336476807|ref|YP_004615948.1| - 0.0002 21.7 0.1 0.00072 19.9 0.0 1.9 2 0 0 2 2 2 1 RNA ligase DUF4974 PF16344.5 gi|336476807|ref|YP_004615948.1| - 0.0038 17.2 0.8 0.024 14.6 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4974) DUF2111 PF09884.9 gi|336476808|ref|YP_004615949.1| - 1.6e-36 124.2 0.1 2.5e-36 123.6 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Mu-transpos_C PF09299.11 gi|336476808|ref|YP_004615949.1| - 0.067 13.2 0.1 0.13 12.3 0.0 1.5 2 0 0 2 2 2 0 Mu transposase, C-terminal DUF2124 PF09897.9 gi|336476809|ref|YP_004615950.1| - 1.2e-54 184.1 0.0 1.3e-54 183.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) DUF1059 PF06348.11 gi|336476810|ref|YP_004615951.1| - 1.1e-11 44.7 0.4 1.5e-11 44.3 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) RsbU_N PF08673.10 gi|336476810|ref|YP_004615951.1| - 0.027 14.5 0.1 0.034 14.3 0.1 1.2 1 0 0 1 1 1 0 Phosphoserine phosphatase RsbU, N-terminal domain PAS_3 PF08447.12 gi|336476810|ref|YP_004615951.1| - 0.05 13.9 0.1 0.063 13.6 0.1 1.2 1 0 0 1 1 1 0 PAS fold DUF832 PF05734.11 gi|336476810|ref|YP_004615951.1| - 0.081 12.4 0.1 0.1 12.0 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus protein of unknown function (DUF832) zf-H2C2_5 PF13909.6 gi|336476810|ref|YP_004615951.1| - 0.14 11.9 0.4 0.25 11.1 0.4 1.4 1 0 0 1 1 1 0 C2H2-type zinc-finger domain DEAD PF00270.29 gi|336476811|ref|YP_004615952.1| - 4.2e-54 183.0 0.5 4.1e-51 173.2 0.1 2.1 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|336476811|ref|YP_004615952.1| - 2.6e-32 111.5 0.9 5.6e-31 107.2 0.1 2.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|336476811|ref|YP_004615952.1| - 3.8e-08 33.5 0.1 1.6e-06 28.3 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|336476811|ref|YP_004615952.1| - 8.8e-05 21.8 0.1 0.00013 21.2 0.1 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C_2 PF13307.6 gi|336476811|ref|YP_004615952.1| - 0.0031 17.7 0.0 0.017 15.3 0.0 2.2 1 1 1 2 2 2 1 Helicase C-terminal domain Flavi_DEAD PF07652.14 gi|336476811|ref|YP_004615952.1| - 0.007 16.3 0.0 1.2 9.1 0.0 2.7 2 1 0 2 2 2 1 Flavivirus DEAD domain AAA_30 PF13604.6 gi|336476811|ref|YP_004615952.1| - 0.008 15.9 0.0 0.21 11.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|336476811|ref|YP_004615952.1| - 0.088 13.1 0.1 0.37 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain Ubie_methyltran PF01209.18 gi|336476812|ref|YP_004615953.1| - 6.8e-24 84.5 0.0 1.1e-23 83.8 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|336476812|ref|YP_004615953.1| - 9.6e-24 83.9 0.0 1.8e-23 83.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336476812|ref|YP_004615953.1| - 1e-22 80.6 0.0 1.7e-22 79.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336476812|ref|YP_004615953.1| - 1e-19 70.8 0.0 1.3e-19 70.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336476812|ref|YP_004615953.1| - 1.2e-14 54.9 0.0 1.9e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336476812|ref|YP_004615953.1| - 3e-14 53.2 0.0 3.8e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|336476812|ref|YP_004615953.1| - 1.5e-10 40.8 0.0 2.1e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|336476812|ref|YP_004615953.1| - 4.3e-09 36.4 0.0 5.9e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|336476812|ref|YP_004615953.1| - 3.6e-08 33.2 0.0 6.6e-08 32.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|336476812|ref|YP_004615953.1| - 2.1e-06 27.7 0.0 3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|336476812|ref|YP_004615953.1| - 1.1e-05 24.9 0.0 1.5e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|336476812|ref|YP_004615953.1| - 5.8e-05 22.8 0.0 9.6e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F CheR PF01739.18 gi|336476812|ref|YP_004615953.1| - 8e-05 22.2 0.1 0.012 15.1 0.0 2.3 1 1 0 2 2 2 1 CheR methyltransferase, SAM binding domain PrmA PF06325.13 gi|336476812|ref|YP_004615953.1| - 0.00012 21.6 0.0 0.00019 20.9 0.0 1.4 2 0 0 2 2 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|336476812|ref|YP_004615953.1| - 0.0002 21.4 0.0 0.00031 20.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|336476812|ref|YP_004615953.1| - 0.00021 21.5 0.1 0.0014 18.8 0.0 1.9 1 1 1 2 2 2 1 FtsJ-like methyltransferase Methyltransf_5 PF01795.19 gi|336476812|ref|YP_004615953.1| - 0.00028 20.5 0.0 0.2 11.1 0.0 2.1 1 1 1 2 2 2 2 MraW methylase family UPF0020 PF01170.18 gi|336476812|ref|YP_004615953.1| - 0.00035 20.3 0.0 0.0063 16.2 0.0 2.2 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.17 gi|336476812|ref|YP_004615953.1| - 0.0004 19.9 0.0 0.00085 18.8 0.0 1.5 2 0 0 2 2 1 1 Putative methyltransferase Methyltransf_15 PF09445.10 gi|336476812|ref|YP_004615953.1| - 0.00049 19.7 0.1 0.0023 17.5 0.0 2.0 2 1 0 2 2 2 1 RNA cap guanine-N2 methyltransferase GCD14 PF08704.10 gi|336476812|ref|YP_004615953.1| - 0.00072 19.3 0.0 0.00099 18.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit NodS PF05401.11 gi|336476812|ref|YP_004615953.1| - 0.002 17.8 0.0 0.0028 17.3 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.12 gi|336476812|ref|YP_004615953.1| - 0.0028 17.3 0.0 0.0045 16.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_PK PF05891.12 gi|336476812|ref|YP_004615953.1| - 0.0035 16.9 0.0 0.0044 16.6 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase TehB PF03848.14 gi|336476812|ref|YP_004615953.1| - 0.011 15.2 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB DOT1 PF08123.13 gi|336476812|ref|YP_004615953.1| - 0.018 14.6 0.1 0.037 13.6 0.1 1.5 1 1 0 1 1 1 0 Histone methylation protein DOT1 RrnaAD PF00398.20 gi|336476812|ref|YP_004615953.1| - 0.03 13.4 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TPMT PF05724.11 gi|336476812|ref|YP_004615953.1| - 0.03 14.0 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) N6_N4_Mtase PF01555.18 gi|336476812|ref|YP_004615953.1| - 0.072 12.8 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 DNA methylase Methyltransf_9 PF08003.11 gi|336476812|ref|YP_004615953.1| - 0.072 12.0 0.0 0.078 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_3 PF01596.17 gi|336476812|ref|YP_004615953.1| - 0.08 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Fibrillarin PF01269.17 gi|336476812|ref|YP_004615953.1| - 0.08 12.0 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Fibrillarin RQC PF09382.10 gi|336476813|ref|YP_004615954.1| - 1.4e-31 108.6 0.1 9.2e-31 106.0 0.0 2.3 2 0 0 2 2 2 1 RQC domain DEAD PF00270.29 gi|336476813|ref|YP_004615954.1| - 2.2e-24 86.2 0.0 2e-23 83.1 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase HRDC PF00570.23 gi|336476813|ref|YP_004615954.1| - 4.7e-23 80.9 0.0 2e-22 78.9 0.0 2.0 2 0 0 2 2 2 1 HRDC domain Helicase_C PF00271.31 gi|336476813|ref|YP_004615954.1| - 1.2e-21 77.1 0.3 1.7e-19 70.2 0.0 3.3 4 0 0 4 4 4 1 Helicase conserved C-terminal domain RecQ_Zn_bind PF16124.5 gi|336476813|ref|YP_004615954.1| - 8.4e-18 64.9 5.3 2.9e-17 63.2 5.3 2.0 1 0 0 1 1 1 1 RecQ zinc-binding Helicase_Sgs1 PF11408.8 gi|336476813|ref|YP_004615954.1| - 0.00015 21.7 0.0 0.00045 20.2 0.0 1.8 1 0 0 1 1 1 1 Sgs1 RecQ helicase ResIII PF04851.15 gi|336476813|ref|YP_004615954.1| - 0.00045 20.3 0.0 0.0015 18.6 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Linker_histone PF00538.19 gi|336476813|ref|YP_004615954.1| - 0.068 13.5 1.1 0.37 11.2 0.1 2.7 2 1 0 2 2 2 0 linker histone H1 and H5 family Sm_multidrug_ex PF06695.11 gi|336476814|ref|YP_004615955.1| - 6.1e-11 43.0 3.1 6.1e-11 43.0 3.1 1.5 2 0 0 2 2 2 1 Putative small multi-drug export protein VKOR PF07884.14 gi|336476814|ref|YP_004615955.1| - 0.16 12.1 10.5 0.17 12.0 2.3 2.2 1 1 1 2 2 2 0 Vitamin K epoxide reductase family Sm_multidrug_ex PF06695.11 gi|336476815|ref|YP_004615956.1| - 1.9e-08 35.0 2.7 3.2e-08 34.2 2.7 1.4 1 0 0 1 1 1 1 Putative small multi-drug export protein SRTM1 PF15872.5 gi|336476815|ref|YP_004615956.1| - 0.065 13.4 3.6 0.12 12.5 0.3 2.3 2 1 0 2 2 2 0 Serine-rich and transmembrane domain-containing protein 1 TMEM65 PF10507.9 gi|336476816|ref|YP_004615957.1| - 0.048 13.6 4.0 0.073 13.0 4.0 1.4 1 1 0 1 1 1 0 Transmembrane protein 65 Gly-zipper_Omp PF13488.6 gi|336476816|ref|YP_004615957.1| - 0.82 9.7 11.5 4.8 7.3 9.2 2.4 2 0 0 2 2 2 0 Glycine zipper COX14 PF14880.6 gi|336476816|ref|YP_004615957.1| - 4.2 7.3 6.4 1.8 8.5 0.6 2.3 2 0 0 2 2 2 0 Cytochrome oxidase c assembly OppC_N PF12911.7 gi|336476816|ref|YP_004615957.1| - 6.4 6.8 7.9 0.59 10.1 1.9 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C CMD PF02627.20 gi|336476817|ref|YP_004615958.1| - 1.5e-09 37.7 0.0 1.8e-09 37.5 0.0 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family MacB_PCD PF12704.7 gi|336476818|ref|YP_004615959.1| - 6.1e-28 98.5 3.3 6.1e-28 98.5 3.3 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|336476818|ref|YP_004615959.1| - 2.2e-10 40.8 8.9 2.2e-10 40.8 8.9 3.4 3 1 0 3 3 3 2 FtsX-like permease family Sm_multidrug_ex PF06695.11 gi|336476819|ref|YP_004615960.1| - 2.3e-05 25.0 5.1 2.3e-05 25.0 5.1 1.6 1 1 1 2 2 2 1 Putative small multi-drug export protein TraQ PF09679.10 gi|336476819|ref|YP_004615960.1| - 0.06 13.3 0.3 0.06 13.3 0.3 2.5 1 1 3 4 4 4 0 Type-F conjugative transfer system pilin chaperone (TraQ) PKD PF00801.20 gi|336476821|ref|YP_004615962.1| - 8.6e-29 99.2 17.5 2.4e-14 52.9 2.2 3.4 3 0 0 3 3 3 2 PKD domain PKD_3 PF16820.5 gi|336476821|ref|YP_004615962.1| - 1.1e-07 31.5 10.4 0.0023 17.6 1.6 3.4 3 0 0 3 3 3 2 PKD-like domain Cupredoxin_1 PF13473.6 gi|336476821|ref|YP_004615962.1| - 1.6e-07 31.4 0.1 1.3e-06 28.5 0.0 2.4 2 1 0 2 2 2 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|336476821|ref|YP_004615962.1| - 0.00038 20.8 0.1 0.0093 16.4 0.1 2.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Y_Y_Y PF07495.13 gi|336476821|ref|YP_004615962.1| - 0.00039 20.3 3.8 0.046 13.7 0.1 3.4 3 0 0 3 3 3 1 Y_Y_Y domain DUF5011 PF16403.5 gi|336476821|ref|YP_004615962.1| - 0.017 15.2 5.2 0.89 9.7 1.8 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5011) ChitinaseA_N PF08329.10 gi|336476821|ref|YP_004615962.1| - 0.02 14.5 0.1 16 5.1 0.0 3.0 3 0 0 3 3 3 0 Chitinase A, N-terminal domain MBG PF17883.1 gi|336476821|ref|YP_004615962.1| - 0.062 13.9 11.4 0.065 13.8 2.0 2.8 3 0 0 3 3 3 0 MBG domain DUF2808 PF10989.8 gi|336476821|ref|YP_004615962.1| - 0.071 13.1 1.0 2.7 8.0 0.0 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF2808) DUF3426 PF11906.8 gi|336476821|ref|YP_004615962.1| - 0.072 13.3 0.2 8.7 6.5 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3426) SoxZ PF08770.11 gi|336476821|ref|YP_004615962.1| - 0.095 12.5 0.1 14 5.5 0.1 2.7 2 0 0 2 2 2 0 Sulphur oxidation protein SoxZ Alpha_adaptinC2 PF02883.20 gi|336476821|ref|YP_004615962.1| - 0.1 12.9 1.1 0.52 10.6 0.0 2.5 3 0 0 3 3 3 0 Adaptin C-terminal domain Arylsulfotran_N PF17425.2 gi|336476821|ref|YP_004615962.1| - 0.12 12.4 10.1 1.5 8.9 0.9 4.1 4 0 0 4 4 4 0 Arylsulfotransferase Ig-like domain DUF3324 PF11797.8 gi|336476821|ref|YP_004615962.1| - 0.24 11.4 1.7 12 5.9 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function C-terminal (DUF3324) Cadherin PF00028.17 gi|336476821|ref|YP_004615962.1| - 0.24 11.9 4.0 8 7.0 0.3 3.4 3 1 0 3 3 3 0 Cadherin domain DUF4330 PF14221.6 gi|336476821|ref|YP_004615962.1| - 0.38 10.9 2.5 8.2 6.6 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4330) DUF11 PF01345.18 gi|336476821|ref|YP_004615962.1| - 1 9.7 15.4 1.2 9.5 3.1 3.1 2 2 0 3 3 3 0 Domain of unknown function DUF11 DUF3139 PF11337.8 gi|336476821|ref|YP_004615962.1| - 1.2 9.8 6.2 3 8.6 0.3 3.6 4 0 0 4 4 3 0 Protein of unknown function (DUF3139) He_PIG PF05345.12 gi|336476821|ref|YP_004615962.1| - 1.6 9.0 20.4 1.4 9.2 1.4 4.2 3 2 0 3 3 3 0 Putative Ig domain Invasin_D3 PF09134.10 gi|336476821|ref|YP_004615962.1| - 1.9 8.9 14.0 7.2 7.0 5.6 3.3 1 1 2 3 3 3 0 Invasin, domain 3 BTP PF05232.12 gi|336476822|ref|YP_004615963.1| - 0.56 10.3 5.5 0.66 10.1 5.5 1.1 1 0 0 1 1 1 0 Chlorhexidine efflux transporter DUF4191 PF13829.6 gi|336476822|ref|YP_004615963.1| - 2.7 7.3 6.1 3 7.1 6.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) bPH_2 PF03703.14 gi|336476823|ref|YP_004615964.1| - 9.7e-17 60.9 0.2 1.4e-16 60.5 0.2 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_4 PF06713.11 gi|336476823|ref|YP_004615964.1| - 0.13 12.4 0.1 0.19 11.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial PH domain bPH_2 PF03703.14 gi|336476824|ref|YP_004615965.1| - 3.4e-39 132.9 0.3 1.1e-16 60.7 0.1 3.2 3 0 0 3 3 3 3 Bacterial PH domain ECF_trnsprt PF12822.7 gi|336476824|ref|YP_004615965.1| - 0.014 15.5 11.5 0.081 13.0 1.2 2.9 3 0 0 3 3 3 0 ECF transporter, substrate-specific component DUF1345 PF07077.11 gi|336476824|ref|YP_004615965.1| - 1.3 8.7 7.0 0.16 11.7 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1345) BCCT PF02028.17 gi|336476825|ref|YP_004615966.1| - 5e-182 605.7 45.6 5.7e-182 605.5 45.6 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter CBS PF00571.28 gi|336476826|ref|YP_004615967.1| - 3.6e-16 59.4 6.1 5.9e-09 36.2 0.3 2.6 3 0 0 3 3 3 2 CBS domain HTH_3 PF01381.22 gi|336476826|ref|YP_004615967.1| - 8.7e-13 48.1 0.2 1.7e-12 47.2 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|336476826|ref|YP_004615967.1| - 2.9e-08 33.9 0.0 4.7e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|336476826|ref|YP_004615967.1| - 8e-06 25.8 0.2 1.3e-05 25.1 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|336476826|ref|YP_004615967.1| - 0.00089 19.6 0.0 0.0024 18.3 0.0 1.7 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 gi|336476826|ref|YP_004615967.1| - 0.0094 15.9 0.1 0.018 15.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|336476826|ref|YP_004615967.1| - 0.023 14.6 0.1 0.046 13.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.23 gi|336476826|ref|YP_004615967.1| - 0.058 13.2 0.0 0.87 9.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family MqsA_antitoxin PF15731.5 gi|336476826|ref|YP_004615967.1| - 0.079 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Aminotran_5 PF00266.19 gi|336476827|ref|YP_004615968.1| - 1.4e-47 162.4 0.0 1.8e-47 162.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|336476827|ref|YP_004615968.1| - 0.00056 19.3 0.0 0.00099 18.5 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|336476827|ref|YP_004615968.1| - 0.12 11.6 0.0 0.29 10.4 0.0 1.6 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DMRL_synthase PF00885.19 gi|336476828|ref|YP_004615969.1| - 1.4e-16 60.6 0.1 1.8e-16 60.2 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Fe-ADH_2 PF13685.6 gi|336476828|ref|YP_004615969.1| - 0.07 12.8 0.1 0.097 12.4 0.1 1.2 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase SpoU_sub_bind PF08032.12 gi|336476828|ref|YP_004615969.1| - 0.11 12.8 0.2 0.31 11.3 0.2 1.8 1 1 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding DMRL_synthase PF00885.19 gi|336476829|ref|YP_004615970.1| - 5.9e-30 103.9 0.2 6.4e-30 103.8 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.21 gi|336476830|ref|YP_004615971.1| - 7.7e-66 222.7 0.0 8.8e-66 222.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|336476830|ref|YP_004615971.1| - 0.00081 18.4 0.0 0.0037 16.3 0.0 1.9 1 1 1 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|336476830|ref|YP_004615971.1| - 0.00097 17.8 0.0 0.0022 16.6 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|336476830|ref|YP_004615971.1| - 0.011 15.1 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Rsbr_N PF08678.10 gi|336476830|ref|YP_004615971.1| - 0.059 13.5 0.0 0.6 10.2 0.0 2.4 2 0 0 2 2 2 0 Rsbr N terminal Beta_elim_lyase PF01212.21 gi|336476830|ref|YP_004615971.1| - 0.12 11.7 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase CTP_transf_like PF01467.26 gi|336476831|ref|YP_004615972.1| - 1.2e-20 74.1 0.2 1.5e-20 73.8 0.2 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|336476831|ref|YP_004615972.1| - 0.0011 18.8 0.8 0.063 13.2 0.8 2.1 1 1 0 1 1 1 1 FAD synthetase PAS PF00989.25 gi|336476832|ref|YP_004615973.1| - 8.2e-27 93.5 0.0 1.7e-12 47.3 0.0 4.1 3 1 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|336476832|ref|YP_004615973.1| - 1.9e-24 85.9 2.1 3.1e-14 53.1 0.0 4.1 4 1 0 4 4 4 3 PAS domain HATPase_c PF02518.26 gi|336476832|ref|YP_004615973.1| - 3.1e-24 85.6 0.0 2e-23 83.0 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|336476832|ref|YP_004615973.1| - 5.5e-22 77.9 0.1 3.7e-17 62.4 0.1 3.2 4 0 0 4 4 4 2 PAS fold PAS_4 PF08448.10 gi|336476832|ref|YP_004615973.1| - 6.1e-16 58.7 0.0 1.3e-05 25.4 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|336476832|ref|YP_004615973.1| - 1.4e-14 53.7 0.0 4.8e-07 29.7 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_11 PF14598.6 gi|336476832|ref|YP_004615973.1| - 5.2e-05 23.3 0.0 0.043 13.9 0.0 2.8 3 0 0 3 3 3 2 PAS domain HisKA PF00512.25 gi|336476832|ref|YP_004615973.1| - 0.0031 17.5 0.2 0.0084 16.1 0.2 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|336476832|ref|YP_004615973.1| - 0.0032 17.4 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|336476832|ref|YP_004615973.1| - 0.0034 17.5 0.6 2.1 8.6 0.0 3.9 3 2 0 3 3 3 1 PAS fold Herpes_U30 PF04523.13 gi|336476832|ref|YP_004615973.1| - 0.058 11.3 0.0 0.13 10.1 0.0 1.5 1 1 1 2 2 2 0 Herpes virus tegument protein U30 PAS PF00989.25 gi|336476833|ref|YP_004615974.1| - 4.1e-39 133.1 0.2 2.5e-10 40.4 0.1 4.8 5 1 0 5 5 5 4 PAS fold PAS_9 PF13426.7 gi|336476833|ref|YP_004615974.1| - 9.3e-38 128.7 1.6 1.4e-15 57.4 0.1 4.4 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.12 gi|336476833|ref|YP_004615974.1| - 1e-33 115.5 0.4 1e-15 57.7 0.3 4.7 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|336476833|ref|YP_004615974.1| - 1.8e-30 105.7 0.0 4.2e-30 104.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|336476833|ref|YP_004615974.1| - 3.8e-26 90.6 0.0 6.4e-08 32.4 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|336476833|ref|YP_004615974.1| - 3.4e-22 78.8 0.0 0.00026 21.2 0.0 4.8 4 1 0 4 4 4 4 PAS fold HisKA PF00512.25 gi|336476833|ref|YP_004615974.1| - 5.2e-16 58.4 1.0 3.7e-15 55.7 0.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|336476833|ref|YP_004615974.1| - 4.6e-07 30.0 0.5 0.094 12.9 0.0 4.5 5 1 0 5 5 5 2 PAS fold HATPase_c_5 PF14501.6 gi|336476833|ref|YP_004615974.1| - 0.00015 21.6 0.0 0.0004 20.2 0.0 1.8 1 0 0 1 1 1 1 GHKL domain ZNRF_3_ecto PF18212.1 gi|336476833|ref|YP_004615974.1| - 0.0026 17.7 0.1 4.9 7.2 0.1 4.0 3 1 1 4 4 4 1 ZNRF-3 Ectodomain PAS_12 PF18095.1 gi|336476833|ref|YP_004615974.1| - 0.0079 15.9 0.4 0.83 9.3 0.0 3.3 3 0 0 3 3 3 1 UPF0242 C-terminal PAS-like domain LMBR1 PF04791.16 gi|336476833|ref|YP_004615974.1| - 0.034 13.1 1.6 0.058 12.3 1.6 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein PAS_11 PF14598.6 gi|336476833|ref|YP_004615974.1| - 0.066 13.3 0.1 2.1 8.5 0.0 2.9 4 0 0 4 4 3 0 PAS domain PAS_10 PF13596.6 gi|336476833|ref|YP_004615974.1| - 0.85 10.2 4.9 1 10.0 0.1 3.6 4 1 1 5 5 5 0 PAS domain DASH_Dad4 PF08650.10 gi|336476833|ref|YP_004615974.1| - 1.2 9.2 6.8 1.4 9.0 0.1 3.3 3 0 0 3 3 3 0 DASH complex subunit Dad4 HcyBio PF01837.16 gi|336476834|ref|YP_004615975.1| - 1.6e-146 487.6 1.3 2.2e-146 487.2 1.3 1.2 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|336476834|ref|YP_004615975.1| - 1.4e-23 83.1 6.2 9.9e-12 45.1 0.5 3.1 3 0 0 3 3 3 2 CBS domain Fer4 PF00037.27 gi|336476835|ref|YP_004615976.1| - 5.4e-18 64.0 12.9 8.9e-10 38.0 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336476835|ref|YP_004615976.1| - 1.6e-13 51.0 22.1 4.3e-10 40.0 11.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476835|ref|YP_004615976.1| - 1.5e-11 43.7 11.5 6.1e-06 26.0 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336476835|ref|YP_004615976.1| - 3.7e-11 43.0 20.8 4.2e-08 33.2 12.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336476835|ref|YP_004615976.1| - 1.8e-10 40.4 14.1 3e-05 23.9 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336476835|ref|YP_004615976.1| - 2.8e-10 41.0 8.7 3.9e-05 24.5 0.3 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|336476835|ref|YP_004615976.1| - 1.5e-08 35.0 12.7 0.0006 20.3 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|336476835|ref|YP_004615976.1| - 3.1e-08 33.6 16.2 0.00053 20.1 3.9 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336476835|ref|YP_004615976.1| - 3.3e-08 33.9 4.3 0.002 18.5 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336476835|ref|YP_004615976.1| - 3.5e-08 33.5 14.2 6.1e-07 29.5 14.7 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336476835|ref|YP_004615976.1| - 5.8e-07 30.3 2.1 0.022 15.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476835|ref|YP_004615976.1| - 1.3e-06 28.4 13.6 0.00069 19.9 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336476835|ref|YP_004615976.1| - 2.9e-06 27.7 6.4 0.02 15.4 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|336476835|ref|YP_004615976.1| - 4.9e-05 23.5 13.8 0.0017 18.6 13.8 2.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336476835|ref|YP_004615976.1| - 0.00015 22.5 19.0 0.026 15.4 4.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|336476835|ref|YP_004615976.1| - 0.0085 16.8 12.6 0.12 13.1 1.3 2.9 3 0 0 3 3 3 2 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|336476835|ref|YP_004615976.1| - 1.2 9.3 5.9 3.2 7.9 5.9 1.7 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S zf-C2H2_11 PF16622.5 gi|336476835|ref|YP_004615976.1| - 9.3 6.1 8.1 17 5.3 0.4 2.3 2 0 0 2 2 2 0 zinc-finger C2H2-type ApbE PF02424.15 gi|336476836|ref|YP_004615977.1| - 0.031 13.8 0.2 0.031 13.8 0.2 1.8 2 1 0 2 2 2 0 ApbE family DisA_N PF02457.16 gi|336476836|ref|YP_004615977.1| - 0.088 12.4 0.2 0.26 10.9 0.1 1.8 2 0 0 2 2 2 0 DisA bacterial checkpoint controller nucleotide-binding AI-2E_transport PF01594.16 gi|336476837|ref|YP_004615978.1| - 2.6e-40 138.6 49.3 3.4e-40 138.2 49.3 1.1 1 0 0 1 1 1 1 AI-2E family transporter DUF5408 PF17402.2 gi|336476837|ref|YP_004615978.1| - 2.8 7.9 6.2 22 5.0 0.4 3.1 2 0 0 2 2 2 0 Family of unknown function (DUF5408) URO-D PF01208.17 gi|336476838|ref|YP_004615979.1| - 3e-78 263.4 0.0 3.4e-78 263.2 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF2154 PF09922.9 gi|336476839|ref|YP_004615980.1| - 8.7e-08 32.0 0.2 1.5e-07 31.3 0.2 1.4 1 0 0 1 1 1 1 Cell wall-active antibiotics response 4TMS YvqF Herpes_LMP1 PF05297.11 gi|336476839|ref|YP_004615980.1| - 0.03 13.6 6.0 0.038 13.2 6.0 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) TMEM238 PF15125.6 gi|336476839|ref|YP_004615980.1| - 9 6.6 11.6 0.47 10.7 4.8 2.1 2 0 0 2 2 2 0 TMEM238 protein family DUF45 PF01863.17 gi|336476840|ref|YP_004615981.1| - 7.9e-58 195.9 0.6 9.2e-58 195.7 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|336476840|ref|YP_004615981.1| - 2.3e-05 24.6 0.2 3.9e-05 23.8 0.2 1.3 1 0 0 1 1 1 1 WLM domain AMP-binding PF00501.28 gi|336476841|ref|YP_004615982.1| - 6.2e-78 262.3 0.0 1.1e-77 261.5 0.0 1.4 2 0 0 2 2 2 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|336476841|ref|YP_004615982.1| - 2.2e-23 83.0 0.2 5.8e-23 81.7 0.2 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF5621 PF18532.1 gi|336476841|ref|YP_004615982.1| - 1.5 8.7 4.1 2.8 7.9 4.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5621) Fer4_7 PF12838.7 gi|336476842|ref|YP_004615983.1| - 1.7e-10 41.4 8.7 2.2e-10 41.0 8.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476842|ref|YP_004615983.1| - 1e-07 32.0 7.9 2.4e-07 30.8 8.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336476842|ref|YP_004615983.1| - 5.6e-07 29.6 21.2 3e-05 24.0 11.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336476842|ref|YP_004615983.1| - 1.9e-06 27.9 8.2 5e-06 26.6 8.2 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336476842|ref|YP_004615983.1| - 2.3e-06 27.2 16.3 0.0024 17.6 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|336476842|ref|YP_004615983.1| - 3.5e-06 27.8 5.8 0.012 16.5 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336476842|ref|YP_004615983.1| - 3e-05 24.9 11.4 0.0033 18.3 1.1 2.1 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|336476842|ref|YP_004615983.1| - 4e-05 23.4 13.4 0.0034 17.4 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336476842|ref|YP_004615983.1| - 4.8e-05 23.2 16.9 0.0091 16.0 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336476842|ref|YP_004615983.1| - 0.00019 21.9 12.9 0.04 14.5 2.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476842|ref|YP_004615983.1| - 0.00039 20.7 16.7 0.0085 16.5 3.3 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|336476842|ref|YP_004615983.1| - 0.0014 19.0 13.8 0.03 14.8 13.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|336476842|ref|YP_004615983.1| - 0.0019 18.9 7.8 0.25 12.1 0.6 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|336476842|ref|YP_004615983.1| - 0.0082 16.7 7.3 0.16 12.5 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|336476842|ref|YP_004615983.1| - 0.06 14.3 17.4 0.21 12.6 4.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain GFRP PF06399.13 gi|336476842|ref|YP_004615983.1| - 0.16 11.8 0.0 0.24 11.3 0.0 1.3 1 1 0 1 1 1 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) CxC7 PF18866.1 gi|336476842|ref|YP_004615983.1| - 0.23 11.6 7.8 1.2 9.3 1.2 2.1 1 1 1 2 2 2 0 CxC7 like cysteine cluster associated with KDZ transposases OrsD PF12013.8 gi|336476842|ref|YP_004615983.1| - 0.93 10.0 8.1 0.7 10.4 0.6 2.0 1 1 0 2 2 2 0 Orsellinic acid/F9775 biosynthesis cluster protein D Fer4_18 PF13746.6 gi|336476842|ref|YP_004615983.1| - 4.8 7.4 8.9 8.6 6.6 1.8 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|336476843|ref|YP_004615984.1| - 1.3e-52 178.8 0.0 1.6e-52 178.5 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|336476843|ref|YP_004615984.1| - 2.6e-24 85.5 0.0 4.6e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|336476843|ref|YP_004615984.1| - 0.00036 20.4 0.0 0.00061 19.7 0.0 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain POR PF01558.18 gi|336476844|ref|YP_004615985.1| - 2.2e-37 128.9 0.0 4e-37 128.0 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|336476844|ref|YP_004615985.1| - 4.4e-24 85.0 1.0 5.9e-24 84.6 0.3 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMP-binding PF00501.28 gi|336476845|ref|YP_004615986.1| - 2.4e-112 375.6 0.0 2.9e-112 375.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|336476845|ref|YP_004615986.1| - 1e-18 68.1 0.0 2.1e-18 67.0 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 4HBT_2 PF13279.6 gi|336476846|ref|YP_004615987.1| - 1.2e-10 41.9 0.0 1.4e-10 41.7 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|336476846|ref|YP_004615987.1| - 4.1e-08 33.5 0.0 6.6e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|336476846|ref|YP_004615987.1| - 0.00044 19.6 0.2 0.024 13.9 0.0 2.1 2 0 0 2 2 2 2 Acyl-ACP thioesterase Cupin_2 PF07883.11 gi|336476847|ref|YP_004615988.1| - 6.9e-16 57.7 0.0 1.1e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Cupin domain HTH_31 PF13560.6 gi|336476847|ref|YP_004615988.1| - 2e-05 24.9 0.0 2.9e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|336476847|ref|YP_004615988.1| - 9e-05 22.4 0.0 0.00021 21.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain AraC_binding PF02311.19 gi|336476847|ref|YP_004615988.1| - 0.0011 18.9 0.2 0.0026 17.7 0.1 1.6 2 0 0 2 2 2 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|336476847|ref|YP_004615988.1| - 0.0012 18.5 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HTH_3 PF01381.22 gi|336476847|ref|YP_004615988.1| - 0.0014 18.7 0.1 0.0029 17.6 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix HTH_25 PF13413.6 gi|336476847|ref|YP_004615988.1| - 0.018 14.9 0.1 0.031 14.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MannoseP_isomer PF01050.18 gi|336476847|ref|YP_004615988.1| - 0.084 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|336476847|ref|YP_004615988.1| - 0.21 11.2 0.0 0.45 10.1 0.0 1.5 1 1 0 1 1 1 0 Cupin Hexapep PF00132.24 gi|336476848|ref|YP_004615989.1| - 2.7e-19 68.1 16.2 4.3e-07 29.4 0.2 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|336476848|ref|YP_004615989.1| - 1.1e-07 31.5 15.3 0.00091 18.9 3.7 4.4 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase DNA_ligase_OB PF03120.16 gi|336476848|ref|YP_004615989.1| - 0.24 11.3 2.9 0.76 9.7 0.1 2.7 2 1 1 3 3 3 0 NAD-dependent DNA ligase OB-fold domain Na_H_Exchanger PF00999.21 gi|336476849|ref|YP_004615990.1| - 1.3e-34 119.7 23.7 1.8e-34 119.2 23.7 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF3488 PF11992.8 gi|336476849|ref|YP_004615990.1| - 7.7 5.4 10.6 3.8 6.4 0.2 2.7 3 1 0 3 3 3 0 Domain of unknown function (DUF3488) HisKA_2 PF07568.12 gi|336476850|ref|YP_004615991.1| - 5.7e-31 106.4 2.5 1.2e-30 105.3 2.5 1.6 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.12 gi|336476850|ref|YP_004615991.1| - 8e-20 70.9 0.2 1.2e-18 67.2 0.2 2.6 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|336476850|ref|YP_004615991.1| - 4.3e-09 36.6 0.7 1.5e-06 28.4 0.0 3.5 3 1 0 3 3 3 1 PAS domain PAS PF00989.25 gi|336476850|ref|YP_004615991.1| - 9.2e-08 32.1 0.3 1.5e-06 28.1 0.0 2.5 2 0 0 2 2 2 1 PAS fold HWE_HK PF07536.14 gi|336476850|ref|YP_004615991.1| - 3.5e-07 30.8 0.3 6.9e-07 29.9 0.3 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_4 PF08448.10 gi|336476850|ref|YP_004615991.1| - 2.7e-06 27.6 0.0 0.0072 16.6 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|336476850|ref|YP_004615991.1| - 3.7e-06 26.8 0.0 0.004 17.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|336476850|ref|YP_004615991.1| - 7.6e-06 26.4 0.5 3.6e-05 24.2 0.5 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|336476850|ref|YP_004615991.1| - 3.1e-05 23.9 0.0 0.00017 21.5 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|336476850|ref|YP_004615991.1| - 0.016 14.9 1.1 0.039 13.7 1.1 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF11 PF01345.18 gi|336476851|ref|YP_004615992.1| - 2.2e-05 24.7 25.8 0.13 12.5 2.8 5.3 1 1 3 4 4 4 4 Domain of unknown function DUF11 DUF1573 PF07610.11 gi|336476851|ref|YP_004615992.1| - 5.5e-05 23.1 7.9 12 6.0 0.2 5.2 5 0 0 5 5 5 3 Protein of unknown function (DUF1573) NPCBM_assoc PF10633.9 gi|336476851|ref|YP_004615992.1| - 5.9e-05 23.2 8.4 9.1 6.6 0.0 5.4 5 0 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase Glucodextran_N PF09137.11 gi|336476851|ref|YP_004615992.1| - 0.0016 18.1 0.5 0.51 9.9 0.0 3.2 4 0 0 4 4 4 1 Glucodextranase, domain N Integrin_alpha2 PF08441.12 gi|336476851|ref|YP_004615992.1| - 0.049 12.5 3.1 38 3.0 0.0 3.9 4 0 0 4 4 4 0 Integrin alpha DUF1496 PF07383.12 gi|336476851|ref|YP_004615992.1| - 0.11 12.1 0.1 1.2e+02 2.4 0.0 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1496) TRAP_beta PF05753.14 gi|336476851|ref|YP_004615992.1| - 0.18 11.2 7.9 37 3.7 0.1 4.4 4 0 0 4 4 4 0 Translocon-associated protein beta (TRAPB) DUF4755 PF15947.5 gi|336476851|ref|YP_004615992.1| - 0.49 10.4 5.6 61 3.6 0.1 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF4755) DUF4984 PF16372.5 gi|336476851|ref|YP_004615992.1| - 0.51 10.2 4.5 6.2 6.7 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4984) BatD PF13584.6 gi|336476851|ref|YP_004615992.1| - 0.62 8.8 3.6 17 4.0 0.1 3.1 3 0 0 3 3 3 0 Oxygen tolerance Toxin_10 PF05431.11 gi|336476851|ref|YP_004615992.1| - 4.8 6.6 7.1 6.8 6.1 0.2 3.7 4 0 0 4 4 4 0 Insecticidal Crystal Toxin, P42 Sua5_yciO_yrdC PF01300.18 gi|336476852|ref|YP_004615993.1| - 1.4e-45 155.0 0.0 2.9e-45 153.9 0.0 1.6 1 0 0 1 1 1 1 Telomere recombination HypF_C PF17788.1 gi|336476852|ref|YP_004615993.1| - 8.1e-24 84.3 0.5 2e-23 83.0 0.5 1.7 1 0 0 1 1 1 1 HypF Kae1-like domain zf-HYPF PF07503.12 gi|336476852|ref|YP_004615993.1| - 5e-23 80.6 19.9 1.8e-11 43.6 3.1 2.5 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.18 gi|336476852|ref|YP_004615993.1| - 3.9e-20 72.0 0.0 7.2e-20 71.2 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|336476852|ref|YP_004615993.1| - 0.00015 21.6 0.0 0.00033 20.4 0.0 1.5 1 0 0 1 1 1 1 Glycoprotease family HycI PF01750.18 gi|336476853|ref|YP_004615994.1| - 5e-16 58.7 0.5 5.9e-16 58.5 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.19 gi|336476854|ref|YP_004615995.1| - 1.1e-76 258.8 0.0 1.5e-48 166.0 0.0 3.0 3 0 0 3 3 3 3 Nickel-dependent hydrogenase VID27_PH PF17747.1 gi|336476854|ref|YP_004615995.1| - 0.072 13.4 0.3 0.15 12.4 0.3 1.5 1 0 0 1 1 1 0 VID27 PH-like domain Oxidored_q6 PF01058.22 gi|336476855|ref|YP_004615996.1| - 6.4e-29 100.4 0.0 9.8e-29 99.8 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFe_hyd_SSU_C PF14720.6 gi|336476855|ref|YP_004615996.1| - 1.6e-27 95.7 5.7 2.1e-26 92.1 3.8 2.4 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal zf-RING_2 PF13639.6 gi|336476855|ref|YP_004615996.1| - 0.62 10.4 4.0 0.56 10.6 1.4 2.3 2 0 0 2 2 2 0 Ring finger domain HupF_HypC PF01455.18 gi|336476856|ref|YP_004615997.1| - 6.1e-21 74.3 0.1 6.9e-21 74.2 0.1 1.0 1 0 0 1 1 1 1 HupF/HypC family HypD PF01924.16 gi|336476857|ref|YP_004615998.1| - 5.1e-131 436.9 0.0 6.2e-131 436.7 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family HypA PF01155.19 gi|336476858|ref|YP_004615999.1| - 1.1e-21 77.0 0.3 1.4e-21 76.6 0.3 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Glutaredoxin PF00462.24 gi|336476858|ref|YP_004615999.1| - 0.05 13.8 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin cobW PF02492.19 gi|336476859|ref|YP_004616000.1| - 1e-26 93.6 2.0 1.3e-26 93.3 2.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|336476859|ref|YP_004616000.1| - 8.9e-05 21.6 0.5 0.0021 17.1 0.5 2.0 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATPase_2 PF01637.18 gi|336476859|ref|YP_004616000.1| - 0.0019 18.1 0.3 0.0044 17.0 0.3 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|336476859|ref|YP_004616000.1| - 0.0035 17.8 0.7 0.091 13.2 0.7 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 gi|336476859|ref|YP_004616000.1| - 0.0056 16.6 0.2 0.012 15.5 0.2 1.8 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|336476859|ref|YP_004616000.1| - 0.0091 15.2 0.5 0.012 14.8 0.4 1.4 1 1 0 1 1 1 1 NB-ARC domain RsgA_GTPase PF03193.16 gi|336476859|ref|YP_004616000.1| - 0.013 15.4 0.2 3.1 7.7 0.1 2.3 2 1 0 2 2 2 0 RsgA GTPase NTPase_1 PF03266.15 gi|336476859|ref|YP_004616000.1| - 0.015 15.2 0.1 0.051 13.5 0.1 1.8 1 1 1 2 2 2 0 NTPase AAA_18 PF13238.6 gi|336476859|ref|YP_004616000.1| - 0.015 15.8 0.0 0.031 14.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|336476859|ref|YP_004616000.1| - 0.021 15.1 0.1 0.066 13.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 gi|336476859|ref|YP_004616000.1| - 0.022 14.0 0.0 0.026 13.8 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain SRP54 PF00448.22 gi|336476859|ref|YP_004616000.1| - 0.023 14.3 0.0 0.034 13.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|336476859|ref|YP_004616000.1| - 0.028 14.4 0.0 0.06 13.4 0.0 1.5 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AcetDehyd-dimer PF09290.11 gi|336476859|ref|YP_004616000.1| - 0.028 14.6 0.0 0.056 13.6 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic acetaldehyde dehydrogenase, dimerisation GTP_EFTU PF00009.27 gi|336476859|ref|YP_004616000.1| - 0.035 13.6 0.1 0.37 10.3 0.0 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_14 PF13173.6 gi|336476859|ref|YP_004616000.1| - 0.038 14.0 0.1 0.089 12.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|336476859|ref|YP_004616000.1| - 0.046 13.9 0.0 0.075 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|336476859|ref|YP_004616000.1| - 0.05 12.6 0.1 0.08 12.0 0.1 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein ATP_bind_1 PF03029.17 gi|336476859|ref|YP_004616000.1| - 0.053 13.3 0.0 0.42 10.4 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|336476859|ref|YP_004616000.1| - 0.06 13.7 0.0 0.12 12.8 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|336476859|ref|YP_004616000.1| - 0.073 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.6 gi|336476859|ref|YP_004616000.1| - 0.12 12.8 0.0 0.46 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF296 PF03479.15 gi|336476859|ref|YP_004616000.1| - 0.14 12.6 0.3 1.9 8.9 0.1 2.1 2 0 0 2 2 2 0 Plants and Prokaryotes Conserved (PCC) domain IMPDH PF00478.25 gi|336476859|ref|YP_004616000.1| - 0.19 10.7 0.9 0.22 10.5 0.1 1.5 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain AIRS_C PF02769.22 gi|336476860|ref|YP_004616001.1| - 1.2e-26 93.7 0.3 1.7e-26 93.3 0.3 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|336476860|ref|YP_004616001.1| - 1.2e-19 70.8 0.2 2.3e-19 69.8 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PKD PF00801.20 gi|336476861|ref|YP_004616002.1| - 3.4e-16 58.9 10.8 3.9e-16 58.7 2.6 2.8 2 1 0 2 2 2 1 PKD domain Cupredoxin_1 PF13473.6 gi|336476861|ref|YP_004616002.1| - 1.4e-11 44.4 0.0 1.6e-10 41.0 0.0 2.1 2 0 0 2 2 2 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|336476861|ref|YP_004616002.1| - 5.1e-07 30.1 1.1 1.4e-05 25.4 1.1 2.3 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family PGF-CTERM PF18204.1 gi|336476861|ref|YP_004616002.1| - 3.7e-06 26.7 4.3 7e-06 25.8 4.3 1.5 1 0 0 1 1 1 1 PGF-CTERM motif PKD_3 PF16820.5 gi|336476861|ref|YP_004616002.1| - 0.00028 20.6 0.9 0.0022 17.7 0.2 2.3 2 0 0 2 2 2 1 PKD-like domain PspC PF04024.12 gi|336476862|ref|YP_004616003.1| - 6e-24 83.6 0.7 6.9e-24 83.4 0.7 1.0 1 0 0 1 1 1 1 PspC domain Phage_holin_3_3 PF16083.5 gi|336476862|ref|YP_004616003.1| - 0.058 13.5 1.5 0.09 12.9 1.5 1.3 1 0 0 1 1 1 0 LydA holin phage, holin superfamily III TrmB PF01978.19 gi|336476863|ref|YP_004616004.1| - 0.013 15.4 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Trp_leader1 PF08055.11 gi|336476863|ref|YP_004616004.1| - 0.18 11.5 5.2 0.33 10.7 5.2 1.4 1 0 0 1 1 1 0 Tryptophan leader peptide DUF2551 PF10826.8 gi|336476864|ref|YP_004616005.1| - 2.2e-33 114.4 1.0 2.8e-33 114.0 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.16 gi|336476864|ref|YP_004616005.1| - 0.00044 20.6 0.1 0.0007 19.9 0.1 1.4 1 1 0 1 1 1 1 Penicillinase repressor DUF2666 PF10869.8 gi|336476864|ref|YP_004616005.1| - 0.014 15.6 0.4 0.019 15.2 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2666) Sda PF08970.10 gi|336476864|ref|YP_004616005.1| - 0.058 13.1 0.5 0.12 12.1 0.0 1.7 2 0 0 2 2 2 0 Sporulation inhibitor A DUF2039 PF10217.9 gi|336476865|ref|YP_004616006.1| - 0.31 11.4 2.2 0.8 10.1 0.2 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2039) Sod_Fe_C PF02777.18 gi|336476866|ref|YP_004616007.1| - 6.1e-33 113.0 0.7 1.3e-32 112.0 0.2 1.7 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|336476866|ref|YP_004616007.1| - 1e-26 93.2 1.9 2.6e-26 91.9 1.9 1.7 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain S-layer PF07752.11 gi|336476867|ref|YP_004616008.1| - 6.1e-41 140.2 5.6 6.1e-41 140.2 5.6 1.6 2 0 0 2 2 2 1 S-layer protein Na_H_Exchanger PF00999.21 gi|336476868|ref|YP_004616009.1| - 2.4e-51 174.7 50.9 3.3e-51 174.2 50.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.26 gi|336476868|ref|YP_004616009.1| - 9.3e-06 26.2 0.0 2.1e-05 25.0 0.0 1.7 2 0 0 2 2 2 1 Universal stress protein family UbiA PF01040.18 gi|336476869|ref|YP_004616010.1| - 1.6e-18 66.9 20.3 1.6e-18 66.9 20.3 1.7 1 1 0 1 1 1 1 UbiA prenyltransferase family COX8 PF02285.15 gi|336476869|ref|YP_004616010.1| - 0.0051 16.7 0.6 0.024 14.5 0.6 2.2 1 0 0 1 1 1 1 Cytochrome oxidase c subunit VIII PAP2_3 PF14378.6 gi|336476870|ref|YP_004616011.1| - 1.9e-15 57.0 17.5 2.3e-15 56.8 15.8 2.0 1 1 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 gi|336476870|ref|YP_004616011.1| - 7.8e-09 35.4 1.4 7.8e-09 35.4 1.4 3.0 2 1 0 2 2 2 1 PAP2 superfamily Lon_2 PF13337.6 gi|336476871|ref|YP_004616012.1| - 4.9e-206 684.6 0.8 5.9e-206 684.4 0.8 1.1 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.13 gi|336476871|ref|YP_004616012.1| - 1.4e-09 37.8 0.0 3.2e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|336476871|ref|YP_004616012.1| - 0.0048 16.7 0.7 0.084 12.7 0.1 2.7 2 1 0 2 2 2 1 Subunit ChlI of Mg-chelatase KDGP_aldolase PF07071.11 gi|336476871|ref|YP_004616012.1| - 0.1 12.4 0.8 9.3 6.0 0.0 2.8 3 0 0 3 3 3 0 KDGP aldolase PglZ PF08665.12 gi|336476872|ref|YP_004616013.1| - 1.7e-46 158.5 0.2 3.9e-46 157.4 0.2 1.6 1 0 0 1 1 1 1 PglZ domain Phosphodiest PF01663.22 gi|336476872|ref|YP_004616013.1| - 0.013 15.2 0.2 0.024 14.3 0.2 1.5 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase HD PF01966.22 gi|336476873|ref|YP_004616014.1| - 1.3e-13 51.2 0.6 5.5e-13 49.2 0.1 2.3 2 1 0 2 2 2 1 HD domain HD_assoc PF13286.6 gi|336476873|ref|YP_004616014.1| - 2.6e-12 47.1 0.6 0.00024 21.6 0.0 3.6 3 0 0 3 3 3 2 Phosphohydrolase-associated domain DUF5097 PF17020.5 gi|336476873|ref|YP_004616014.1| - 1.9 8.9 9.4 0.59 10.5 0.4 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF5097) N6_Mtase PF02384.16 gi|336476874|ref|YP_004616015.1| - 1.5e-14 54.0 0.0 1.8e-08 34.0 0.0 2.7 2 1 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.11 gi|336476874|ref|YP_004616015.1| - 7.6e-07 29.6 0.2 4.1e-06 27.2 0.2 2.3 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|336476874|ref|YP_004616015.1| - 0.07 12.8 0.0 6.2 6.4 0.1 2.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 AntA PF08346.12 gi|336476874|ref|YP_004616015.1| - 2.5 8.7 7.0 28 5.3 0.0 3.9 4 1 1 5 5 5 0 AntA/AntB antirepressor HATPase_c_4 PF13749.6 gi|336476875|ref|YP_004616016.1| - 4.3e-26 90.9 0.1 9.8e-26 89.7 0.1 1.6 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|336476875|ref|YP_004616016.1| - 1.6e-22 80.1 0.0 2.8e-22 79.3 0.0 1.4 1 0 0 1 1 1 1 Putative DNA-binding domain PadR PF03551.14 gi|336476875|ref|YP_004616016.1| - 0.002 18.0 0.0 0.0041 17.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|336476875|ref|YP_004616016.1| - 0.096 12.7 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HATPase_c_2 PF13581.6 gi|336476875|ref|YP_004616016.1| - 0.097 12.6 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain C-C_Bond_Lyase PF15617.6 gi|336476875|ref|YP_004616016.1| - 0.12 11.6 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 C-C_Bond_Lyase of the TIM-Barrel fold Par3_HAL_N_term PF12053.8 gi|336476876|ref|YP_004616017.1| - 0.016 15.4 4.4 0.74 10.1 0.1 3.8 3 0 0 3 3 3 0 N-terminal of Par3 and HAL proteins NTPase_1 PF03266.15 gi|336476876|ref|YP_004616017.1| - 0.023 14.6 2.8 3.8 7.4 0.0 4.4 5 0 0 5 5 5 0 NTPase AAA_22 PF13401.6 gi|336476876|ref|YP_004616017.1| - 0.027 14.7 2.3 5.2 7.4 0.0 4.2 3 2 0 3 3 3 0 AAA domain AAA_17 PF13207.6 gi|336476876|ref|YP_004616017.1| - 0.04 14.4 3.7 0.14 12.6 1.1 3.5 2 1 0 2 2 2 0 AAA domain DUF4226 PF10774.9 gi|336476876|ref|YP_004616017.1| - 0.15 12.4 0.4 2.7 8.3 0.0 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF4226) NTS_2 PF15448.6 gi|336476876|ref|YP_004616017.1| - 0.35 11.3 4.0 22 5.6 0.1 4.3 3 0 0 3 3 3 0 N-terminal segments of P. falciparum erythrocyte membrane protein PLDc_2 PF13091.6 gi|336476877|ref|YP_004616018.1| - 2.6e-06 27.4 0.2 5e-06 26.4 0.2 1.4 1 0 0 1 1 1 1 PLD-like domain DZR PF12773.7 gi|336476877|ref|YP_004616018.1| - 0.0087 16.1 10.3 0.23 11.5 10.6 2.4 1 1 1 2 2 2 2 Double zinc ribbon Regulator_TrmB PF11495.8 gi|336476877|ref|YP_004616018.1| - 0.022 14.0 0.5 0.047 12.9 0.4 1.6 1 1 1 2 2 2 0 Archaeal transcriptional regulator TrmB MRPL52 PF18699.1 gi|336476877|ref|YP_004616018.1| - 0.52 10.5 3.4 0.25 11.5 0.9 1.7 2 0 0 2 2 2 0 Mitoribosomal protein mL52 RNA_pol_Rbc25 PF08292.12 gi|336476877|ref|YP_004616018.1| - 0.55 10.5 4.2 1.1 9.5 4.1 1.7 1 1 0 1 1 1 0 RNA polymerase III subunit Rpc25 zinc-ribbons_6 PF07191.12 gi|336476877|ref|YP_004616018.1| - 1.6 8.7 10.1 24 5.0 6.3 2.3 1 1 1 2 2 2 0 zinc-ribbons DUF1244 PF06844.11 gi|336476877|ref|YP_004616018.1| - 2.3 8.4 7.8 3.4 7.9 0.4 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1244) zf-C3HC4 PF00097.25 gi|336476877|ref|YP_004616018.1| - 5 7.1 14.9 12 5.9 9.7 3.1 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_3 PF13920.6 gi|336476877|ref|YP_004616018.1| - 9 6.2 12.7 16 5.4 6.4 3.0 1 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) SpoIIAA-like PF11964.8 gi|336476878|ref|YP_004616019.1| - 5.5e-18 65.8 0.4 6.5e-18 65.6 0.4 1.1 1 0 0 1 1 1 1 SpoIIAA-like PEPcase_2 PF14010.6 gi|336476879|ref|YP_004616020.1| - 7.3e-127 423.9 0.1 8.3e-127 423.7 0.1 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.17 gi|336476879|ref|YP_004616020.1| - 6.2e-06 24.6 0.0 1e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase TetR_C_10 PF16295.5 gi|336476879|ref|YP_004616020.1| - 0.049 13.9 0.1 0.36 11.1 0.0 2.3 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain GyrI-like PF06445.15 gi|336476880|ref|YP_004616021.1| - 3.8e-28 98.7 0.2 4.3e-28 98.6 0.2 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|336476880|ref|YP_004616021.1| - 3.6e-16 59.6 0.0 4.5e-16 59.4 0.0 1.0 1 0 0 1 1 1 1 Integron-associated effector binding protein APH PF01636.23 gi|336476881|ref|YP_004616022.1| - 2.6e-05 24.3 0.0 4.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|336476881|ref|YP_004616022.1| - 0.037 13.6 0.1 3 7.4 0.0 2.4 2 1 0 2 2 2 0 RIO1 family Caroten_synth PF04240.12 gi|336476882|ref|YP_004616023.1| - 4.4e-54 183.5 20.2 5.1e-54 183.3 20.2 1.0 1 0 0 1 1 1 1 Carotenoid biosynthesis protein Smim3 PF17307.2 gi|336476882|ref|YP_004616023.1| - 0.11 12.0 0.0 0.11 12.0 0.0 2.0 2 0 0 2 2 2 0 Small integral membrane protein 3 UbiA PF01040.18 gi|336476883|ref|YP_004616024.1| - 6.1e-29 101.1 12.5 6.1e-29 101.1 12.5 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF1980 PF09323.10 gi|336476883|ref|YP_004616024.1| - 4 7.3 10.1 0.061 13.2 1.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1980) SQS_PSY PF00494.19 gi|336476884|ref|YP_004616025.1| - 3.2e-39 135.0 0.0 3.7e-39 134.8 0.0 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase Amino_oxidase PF01593.24 gi|336476885|ref|YP_004616026.1| - 3.2e-34 119.0 0.0 3.7e-34 118.8 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|336476885|ref|YP_004616026.1| - 3.5e-13 49.6 0.0 6.8e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|336476885|ref|YP_004616026.1| - 1.9e-11 44.1 0.0 8.8e-05 22.2 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|336476885|ref|YP_004616026.1| - 1.2e-09 37.7 0.3 5.4e-09 35.6 0.3 1.9 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|336476885|ref|YP_004616026.1| - 2.2e-08 33.7 0.0 0.00015 21.1 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336476885|ref|YP_004616026.1| - 2.8e-07 29.6 0.9 0.00031 19.6 0.3 2.8 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox PF00070.27 gi|336476885|ref|YP_004616026.1| - 1.3e-06 28.8 1.9 0.0048 17.4 0.5 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|336476885|ref|YP_004616026.1| - 3.5e-05 23.3 0.0 0.00013 21.5 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|336476885|ref|YP_004616026.1| - 4.1e-05 23.2 0.4 0.00028 20.5 0.1 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.17 gi|336476885|ref|YP_004616026.1| - 0.00012 21.4 0.4 0.00019 20.7 0.4 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|336476885|ref|YP_004616026.1| - 0.0002 20.7 1.4 0.1 11.9 0.2 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|336476885|ref|YP_004616026.1| - 0.00063 19.1 0.5 0.0015 17.8 0.2 1.7 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|336476885|ref|YP_004616026.1| - 0.00095 18.3 0.5 0.0035 16.5 0.3 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|336476885|ref|YP_004616026.1| - 0.0026 17.7 0.1 0.006 16.5 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|336476885|ref|YP_004616026.1| - 0.023 14.9 0.2 0.057 13.7 0.1 1.7 2 0 0 2 2 1 0 TrkA-N domain MCRA PF06100.11 gi|336476885|ref|YP_004616026.1| - 0.04 12.7 0.4 3.8 6.2 0.1 2.2 2 0 0 2 2 2 0 MCRA family AlaDh_PNT_C PF01262.21 gi|336476885|ref|YP_004616026.1| - 0.068 12.5 0.2 0.14 11.4 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NDUF_B12 PF08122.12 gi|336476885|ref|YP_004616026.1| - 0.11 12.6 0.0 2.5 8.2 0.0 2.5 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family KMP11 PF03037.16 gi|336476885|ref|YP_004616026.1| - 0.93 10.3 8.5 0.97 10.3 2.0 3.1 3 0 0 3 3 3 0 Kinetoplastid membrane protein 11 DUF1724 PF08350.10 gi|336476886|ref|YP_004616027.1| - 1.4e-22 79.5 1.0 3.1e-22 78.5 1.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) PLDc_2 PF13091.6 gi|336476886|ref|YP_004616027.1| - 0.00076 19.4 0.0 0.002 18.0 0.0 1.7 2 0 0 2 2 2 1 PLD-like domain Imm43 PF15570.6 gi|336476886|ref|YP_004616027.1| - 0.0074 16.3 2.5 0.01 15.9 0.2 2.2 1 1 1 2 2 2 1 Immunity protein 43 Beta_helix PF13229.6 gi|336476887|ref|YP_004616028.1| - 2.1e-26 92.7 54.1 6.5e-15 55.3 24.2 2.6 1 1 1 2 2 2 2 Right handed beta helix region NosD PF05048.13 gi|336476887|ref|YP_004616028.1| - 5e-12 45.6 46.2 0.57 9.4 46.2 3.1 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.7 gi|336476887|ref|YP_004616028.1| - 0.027 14.3 28.6 0.037 13.9 10.9 4.0 1 1 2 3 3 3 0 Pectate lyase superfamily protein PEMT PF04191.13 gi|336476888|ref|YP_004616029.1| - 2e-11 44.2 3.0 2e-11 44.2 3.0 2.2 2 1 1 3 3 3 1 Phospholipid methyltransferase ParE_toxin PF05016.15 gi|336476890|ref|YP_004616031.1| - 1.2e-08 35.4 0.0 1.7e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 gi|336476890|ref|YP_004616031.1| - 0.077 13.3 0.1 0.14 12.5 0.1 1.5 1 0 0 1 1 1 0 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE-like_toxin PF15781.5 gi|336476890|ref|YP_004616031.1| - 0.079 12.9 0.3 0.11 12.5 0.3 1.2 1 0 0 1 1 1 0 ParE-like toxin of type II bacterial toxin-antitoxin system GlutR_dimer PF00745.20 gi|336476890|ref|YP_004616031.1| - 0.079 13.4 0.1 0.14 12.7 0.1 1.3 1 0 0 1 1 1 0 Glutamyl-tRNAGlu reductase, dimerisation domain PPDK_N PF01326.19 gi|336476890|ref|YP_004616031.1| - 0.1 11.9 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ChaB PF06150.12 gi|336476891|ref|YP_004616032.1| - 1.8e-27 95.7 4.4 2.1e-27 95.5 4.4 1.1 1 0 0 1 1 1 1 ChaB Mis14 PF08641.12 gi|336476891|ref|YP_004616032.1| - 0.031 14.6 0.2 0.046 14.0 0.2 1.3 1 0 0 1 1 1 0 Kinetochore protein Mis14 like RNase_T PF00929.24 gi|336476892|ref|YP_004616033.1| - 1.1e-17 65.1 0.0 1.7e-17 64.5 0.0 1.3 1 1 0 1 1 1 1 Exonuclease RNase_H_2 PF13482.6 gi|336476892|ref|YP_004616033.1| - 0.0024 17.9 0.4 0.031 14.2 0.4 2.1 1 1 0 1 1 1 1 RNase_H superfamily DUF5051 PF16473.5 gi|336476892|ref|YP_004616033.1| - 0.033 14.2 0.0 0.055 13.5 0.0 1.4 1 1 0 1 1 1 0 3' exoribonuclease, RNase T-like DUF1638 PF07796.11 gi|336476893|ref|YP_004616034.1| - 5.4e-34 117.6 0.0 7e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) DUF1643 PF07799.12 gi|336476893|ref|YP_004616034.1| - 0.099 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1643) CobN-Mg_chel PF02514.16 gi|336476894|ref|YP_004616035.1| - 0 1135.1 0.3 0 1124.8 0.2 2.0 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF2149 PF09919.9 gi|336476895|ref|YP_004616036.1| - 2.8e-35 120.4 0.2 3.3e-35 120.2 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) DUF2849 PF11011.8 gi|336476895|ref|YP_004616036.1| - 0.13 12.9 0.0 0.24 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2849) CSG2 PF16965.5 gi|336476895|ref|YP_004616036.1| - 0.13 11.2 0.0 0.15 11.0 0.0 1.0 1 0 0 1 1 1 0 Ceramide synthase regulator MotA_ExbB PF01618.16 gi|336476896|ref|YP_004616037.1| - 3.7e-13 49.3 0.3 5.2e-13 48.8 0.3 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.19 gi|336476896|ref|YP_004616037.1| - 0.0027 17.6 0.5 0.0044 16.9 0.2 1.4 1 1 0 1 1 1 1 VIT family Sarcoglycan_2 PF05510.13 gi|336476896|ref|YP_004616037.1| - 0.021 13.6 0.2 0.029 13.1 0.2 1.1 1 0 0 1 1 1 0 Sarcoglycan alpha/epsilon DUF2162 PF09930.9 gi|336476897|ref|YP_004616038.1| - 3e-61 206.7 27.9 3.3e-61 206.5 27.9 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) Cyt_bd_oxida_II PF02322.15 gi|336476897|ref|YP_004616038.1| - 1.3 8.3 22.7 6.7 6.0 22.7 1.8 1 1 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II PEMT PF04191.13 gi|336476897|ref|YP_004616038.1| - 4.7 7.7 11.6 0.067 13.6 2.0 2.8 3 1 0 3 3 3 0 Phospholipid methyltransferase Phage_holin_8 PF16931.5 gi|336476897|ref|YP_004616038.1| - 5.2 7.1 12.0 3.3 7.7 0.2 3.5 3 1 0 3 3 3 0 Putative phage holin DUF4832 PF16116.5 gi|336476898|ref|YP_004616039.1| - 0.00094 19.1 0.2 0.017 15.0 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4832) DUF4878 PF12870.7 gi|336476898|ref|YP_004616039.1| - 0.006 16.9 0.5 0.041 14.2 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4878) DUF4926 PF16277.5 gi|336476898|ref|YP_004616039.1| - 0.034 13.5 0.2 0.5 9.8 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4926) CARDB PF07705.11 gi|336476898|ref|YP_004616039.1| - 0.088 13.1 0.3 0.63 10.3 0.1 2.4 2 2 0 2 2 2 0 CARDB UL11 PF11094.8 gi|336476898|ref|YP_004616039.1| - 0.13 12.1 0.0 0.48 10.3 0.0 2.0 1 0 0 1 1 1 0 Membrane-associated tegument protein Abhydrolase_1 PF00561.20 gi|336476899|ref|YP_004616040.1| - 3.8e-25 89.0 0.0 1.8e-18 67.1 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|336476899|ref|YP_004616040.1| - 9.9e-21 75.4 0.0 1.2e-20 75.1 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|336476899|ref|YP_004616040.1| - 3.5e-14 52.7 0.0 4.9e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|336476899|ref|YP_004616040.1| - 0.00015 21.9 0.0 0.00032 20.8 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Ndr PF03096.14 gi|336476899|ref|YP_004616040.1| - 0.00015 20.6 0.0 0.0002 20.2 0.0 1.1 1 0 0 1 1 1 1 Ndr family Peptidase_S9 PF00326.21 gi|336476899|ref|YP_004616040.1| - 0.019 14.5 0.0 0.093 12.2 0.0 2.0 2 0 0 2 2 2 0 Prolyl oligopeptidase family Thioesterase PF00975.20 gi|336476899|ref|YP_004616040.1| - 0.036 14.2 0.0 0.082 13.0 0.0 1.6 1 1 0 1 1 1 0 Thioesterase domain FSH1 PF03959.13 gi|336476899|ref|YP_004616040.1| - 0.16 11.6 0.0 2.8 7.6 0.0 2.3 2 1 0 2 2 2 0 Serine hydrolase (FSH1) DUF3211 PF11485.8 gi|336476900|ref|YP_004616041.1| - 0.028 14.6 2.4 0.049 13.8 2.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3211) EF-1_beta_acid PF10587.9 gi|336476900|ref|YP_004616041.1| - 0.17 12.3 0.2 0.35 11.3 0.2 1.5 1 0 0 1 1 1 0 Eukaryotic elongation factor 1 beta central acidic region MASE3 PF17159.4 gi|336476901|ref|YP_004616042.1| - 3.6e-88 295.0 25.9 5.1e-88 294.5 25.9 1.2 1 0 0 1 1 1 1 Membrane-associated sensor domain HATPase_c PF02518.26 gi|336476901|ref|YP_004616042.1| - 5.4e-19 68.8 0.1 1.1e-18 67.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|336476901|ref|YP_004616042.1| - 3.9e-05 23.6 0.3 7.7e-05 22.7 0.3 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|336476901|ref|YP_004616042.1| - 0.0079 15.9 0.2 0.022 14.4 0.2 1.8 1 1 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.6 gi|336476901|ref|YP_004616042.1| - 0.024 14.6 0.0 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|336476901|ref|YP_004616042.1| - 0.029 14.2 1.3 0.62 9.9 0.1 2.9 3 0 0 3 3 3 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L_HMGIC_fpl PF10242.9 gi|336476901|ref|YP_004616042.1| - 0.56 10.4 6.0 0.41 10.8 1.0 2.4 2 0 0 2 2 2 0 Lipoma HMGIC fusion partner-like protein DUF2769 PF10967.8 gi|336476902|ref|YP_004616043.1| - 1.2e-21 77.1 14.0 1.6e-21 76.7 14.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) Methyltransf_25 PF13649.6 gi|336476903|ref|YP_004616044.1| - 3.7e-12 46.8 0.0 7.2e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336476903|ref|YP_004616044.1| - 4.5e-10 40.2 0.0 1e-09 39.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|336476903|ref|YP_004616044.1| - 2e-08 33.6 0.0 3.1e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|336476903|ref|YP_004616044.1| - 3.4e-07 30.2 0.0 5.3e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336476903|ref|YP_004616044.1| - 1.4e-05 25.6 0.0 3.1e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|336476903|ref|YP_004616044.1| - 1.6e-05 24.3 0.3 2.8e-05 23.5 0.0 1.5 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G Methyltransf_31 PF13847.6 gi|336476903|ref|YP_004616044.1| - 2.1e-05 24.4 0.0 4.2e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336476903|ref|YP_004616044.1| - 0.00016 21.1 0.6 0.00023 20.6 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|336476903|ref|YP_004616044.1| - 0.0003 20.0 0.0 0.00049 19.3 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase MTS PF05175.14 gi|336476903|ref|YP_004616044.1| - 0.00035 20.2 0.0 0.0007 19.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.11 gi|336476903|ref|YP_004616044.1| - 0.00099 18.2 0.0 0.031 13.3 0.0 2.1 2 0 0 2 2 2 1 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.19 gi|336476903|ref|YP_004616044.1| - 0.0013 18.6 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Fibrillarin PF01269.17 gi|336476903|ref|YP_004616044.1| - 0.0014 17.8 2.5 0.0026 16.9 0.0 2.0 2 0 0 2 2 2 1 Fibrillarin CMAS PF02353.20 gi|336476903|ref|YP_004616044.1| - 0.0025 17.2 0.1 0.0059 15.9 0.0 1.6 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|336476903|ref|YP_004616044.1| - 0.0041 17.1 1.2 0.026 14.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.14 gi|336476903|ref|YP_004616044.1| - 0.012 15.1 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB MetW PF07021.12 gi|336476903|ref|YP_004616044.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Troponin PF00992.20 gi|336476903|ref|YP_004616044.1| - 3.8 7.8 7.8 0.15 12.4 1.2 1.9 2 0 0 2 2 2 0 Troponin ABC_tran PF00005.27 gi|336476904|ref|YP_004616045.1| - 2.2e-31 109.2 0.0 3e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336476904|ref|YP_004616045.1| - 3.8e-11 43.3 1.5 1.8e-05 24.7 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|336476904|ref|YP_004616045.1| - 1.8e-05 24.4 0.0 7.1e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|336476904|ref|YP_004616045.1| - 2.2e-05 25.1 0.5 3e-05 24.6 0.5 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|336476904|ref|YP_004616045.1| - 3.4e-05 23.7 0.6 0.00042 20.1 0.2 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|336476904|ref|YP_004616045.1| - 8.1e-05 22.2 1.0 0.0015 18.0 1.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|336476904|ref|YP_004616045.1| - 0.00016 21.6 0.0 0.00029 20.8 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|336476904|ref|YP_004616045.1| - 0.00028 21.3 0.0 0.00038 20.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336476904|ref|YP_004616045.1| - 0.001 19.3 1.5 0.014 15.7 1.5 2.3 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|336476904|ref|YP_004616045.1| - 0.0014 18.7 0.1 0.033 14.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|336476904|ref|YP_004616045.1| - 0.0025 16.7 0.5 2.4 6.9 0.0 3.1 2 2 0 2 2 2 2 Predicted ATPase of the ABC class HSM3_N PF18795.1 gi|336476904|ref|YP_004616045.1| - 0.0031 17.0 2.0 0.0044 16.5 0.7 2.0 2 0 0 2 2 2 1 DNA mismatch repair protein HSM3, N terminal domain Mg_chelatase PF01078.21 gi|336476904|ref|YP_004616045.1| - 0.0053 16.2 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|336476904|ref|YP_004616045.1| - 0.0088 16.0 0.1 0.014 15.3 0.1 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|336476904|ref|YP_004616045.1| - 0.014 14.6 1.1 0.18 11.0 0.0 2.7 2 1 0 2 2 2 0 NB-ARC domain T2SSE PF00437.20 gi|336476904|ref|YP_004616045.1| - 0.014 14.5 0.1 0.04 13.0 0.1 1.7 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|336476904|ref|YP_004616045.1| - 0.016 14.9 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|336476904|ref|YP_004616045.1| - 0.017 15.0 0.7 0.053 13.4 0.1 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain SRP54 PF00448.22 gi|336476904|ref|YP_004616045.1| - 0.022 14.4 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_5 PF07728.14 gi|336476904|ref|YP_004616045.1| - 0.022 14.7 0.0 0.5 10.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|336476904|ref|YP_004616045.1| - 0.024 15.0 0.3 0.2 12.0 0.0 2.3 2 1 1 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|336476904|ref|YP_004616045.1| - 0.027 14.2 0.0 0.048 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|336476904|ref|YP_004616045.1| - 0.033 13.9 0.5 0.17 11.6 0.0 2.2 2 1 1 3 3 3 0 IstB-like ATP binding protein PhoH PF02562.16 gi|336476904|ref|YP_004616045.1| - 0.051 13.0 0.1 0.12 11.8 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein NACHT PF05729.12 gi|336476904|ref|YP_004616045.1| - 0.12 12.3 0.1 0.23 11.3 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|336476904|ref|YP_004616045.1| - 0.15 12.5 0.4 0.49 10.8 0.4 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|336476904|ref|YP_004616045.1| - 0.15 11.6 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|336476905|ref|YP_004616046.1| - 2.2e-91 306.1 31.9 2.8e-91 305.8 31.9 1.1 1 0 0 1 1 1 1 FecCD transport family RhodobacterPufX PF11511.8 gi|336476905|ref|YP_004616046.1| - 0.029 14.0 0.4 0.029 14.0 0.4 3.3 4 0 0 4 4 4 0 Intrinsic membrane protein PufX Peripla_BP_2 PF01497.18 gi|336476906|ref|YP_004616047.1| - 2.2e-21 76.5 0.0 2.9e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein MatE PF01554.18 gi|336476907|ref|YP_004616048.1| - 3.6e-59 199.0 42.2 1.5e-34 119.0 10.0 3.3 2 1 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|336476907|ref|YP_004616048.1| - 1.7e-10 41.1 30.9 1.3e-09 38.3 11.9 5.0 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MarR_2 PF12802.7 gi|336476908|ref|YP_004616049.1| - 1.6e-11 43.9 0.0 2.5e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|336476908|ref|YP_004616049.1| - 1.7e-09 37.5 0.0 3e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|336476908|ref|YP_004616049.1| - 3.6e-09 37.0 0.1 6.2e-09 36.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|336476908|ref|YP_004616049.1| - 8e-07 28.9 0.1 1.5e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|336476908|ref|YP_004616049.1| - 5.3e-06 26.3 0.0 4.2e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|336476908|ref|YP_004616049.1| - 1.3e-05 25.3 0.0 1.9e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|336476908|ref|YP_004616049.1| - 1.7e-05 24.9 0.0 3.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|336476908|ref|YP_004616049.1| - 0.00091 18.7 0.1 0.0097 15.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|336476908|ref|YP_004616049.1| - 0.0031 17.4 0.0 0.0057 16.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF3116 PF11313.8 gi|336476908|ref|YP_004616049.1| - 0.0042 16.9 0.0 0.009 15.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) HTH_11 PF08279.12 gi|336476908|ref|YP_004616049.1| - 0.0057 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|336476908|ref|YP_004616049.1| - 0.0057 16.4 0.1 0.014 15.2 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|336476908|ref|YP_004616049.1| - 0.006 16.2 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 gi|336476908|ref|YP_004616049.1| - 0.0095 15.8 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_38 PF13936.6 gi|336476908|ref|YP_004616049.1| - 0.017 14.9 0.1 0.35 10.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_54 PF18607.1 gi|336476908|ref|YP_004616049.1| - 0.017 15.1 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 ParA helix turn helix domain HTH_5 PF01022.20 gi|336476908|ref|YP_004616049.1| - 0.037 13.9 0.0 0.072 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2551 PF10826.8 gi|336476908|ref|YP_004616049.1| - 0.044 14.0 0.2 0.14 12.4 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2551) B-block_TFIIIC PF04182.12 gi|336476908|ref|YP_004616049.1| - 0.081 13.1 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Peripla_BP_2 PF01497.18 gi|336476909|ref|YP_004616050.1| - 8e-21 74.7 0.0 1.1e-20 74.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|336476910|ref|YP_004616051.1| - 1.1e-90 303.9 32.3 1.3e-90 303.5 32.3 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|336476911|ref|YP_004616052.1| - 4.1e-34 118.0 0.0 5.8e-34 117.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336476911|ref|YP_004616052.1| - 2.3e-12 47.3 0.4 1.4e-05 25.1 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336476911|ref|YP_004616052.1| - 1.2e-07 31.4 1.0 0.0028 17.1 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|336476911|ref|YP_004616052.1| - 2e-05 24.5 0.6 2e-05 24.5 0.6 1.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|336476911|ref|YP_004616052.1| - 2.7e-05 23.8 0.0 6.1e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|336476911|ref|YP_004616052.1| - 2.9e-05 24.7 0.1 5.4e-05 23.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|336476911|ref|YP_004616052.1| - 0.0016 18.2 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|336476911|ref|YP_004616052.1| - 0.0046 17.2 0.3 0.015 15.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336476911|ref|YP_004616052.1| - 0.0052 17.2 0.0 0.011 16.2 0.0 1.5 2 0 0 2 2 1 1 AAA ATPase domain cobW PF02492.19 gi|336476911|ref|YP_004616052.1| - 0.0064 16.1 0.0 0.014 15.0 0.0 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|336476911|ref|YP_004616052.1| - 0.0083 15.2 0.1 0.034 13.2 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_30 PF13604.6 gi|336476911|ref|YP_004616052.1| - 0.0088 15.8 0.0 0.025 14.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|336476911|ref|YP_004616052.1| - 0.01 15.4 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|336476911|ref|YP_004616052.1| - 0.015 15.3 0.2 0.14 12.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|336476911|ref|YP_004616052.1| - 0.018 15.5 0.2 0.18 12.2 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|336476911|ref|YP_004616052.1| - 0.02 14.8 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|336476911|ref|YP_004616052.1| - 0.026 13.7 1.4 0.64 9.2 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain PRK PF00485.18 gi|336476911|ref|YP_004616052.1| - 0.028 14.2 0.0 0.055 13.2 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA12 PF10443.9 gi|336476911|ref|YP_004616052.1| - 0.033 12.9 0.0 0.058 12.1 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein AAA_5 PF07728.14 gi|336476911|ref|YP_004616052.1| - 0.044 13.8 0.0 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|336476911|ref|YP_004616052.1| - 0.045 13.5 0.0 0.083 12.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC_ATPase PF09818.9 gi|336476911|ref|YP_004616052.1| - 0.048 12.5 0.8 5 5.8 0.1 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class ATPase_2 PF01637.18 gi|336476911|ref|YP_004616052.1| - 0.048 13.6 0.0 0.067 13.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|336476911|ref|YP_004616052.1| - 0.051 12.9 0.0 0.11 11.8 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.6 gi|336476911|ref|YP_004616052.1| - 0.053 12.2 0.7 2.6 6.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|336476911|ref|YP_004616052.1| - 0.056 13.8 1.8 0.16 12.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|336476911|ref|YP_004616052.1| - 0.094 12.2 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|336476911|ref|YP_004616052.1| - 0.098 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.6 gi|336476911|ref|YP_004616052.1| - 0.13 12.5 0.1 1.1 9.6 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TrmO PF01980.16 gi|336476912|ref|YP_004616053.1| - 1.5e-27 96.1 0.0 1.7e-27 96.0 0.0 1.0 1 0 0 1 1 1 1 tRNA-methyltransferase O MacB_PCD PF12704.7 gi|336476913|ref|YP_004616054.1| - 4.9e-27 95.5 3.5 4.9e-27 95.5 3.5 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|336476913|ref|YP_004616054.1| - 3.6e-10 40.2 17.7 8.2e-10 39.0 5.1 3.5 3 0 0 3 3 3 2 FtsX-like permease family TauE PF01925.19 gi|336476913|ref|YP_004616054.1| - 0.0067 16.1 11.0 0.0067 16.1 11.0 1.9 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE DUF3784 PF12650.7 gi|336476914|ref|YP_004616055.1| - 2e-16 59.9 9.9 2.3e-16 59.7 9.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) Neurensin PF14927.6 gi|336476914|ref|YP_004616055.1| - 0.053 13.2 1.1 0.16 11.7 0.7 1.9 1 1 0 1 1 1 0 Neurensin Tetraspanin PF00335.20 gi|336476914|ref|YP_004616055.1| - 0.095 12.4 5.9 0.18 11.5 6.0 1.4 1 1 0 1 1 1 0 Tetraspanin family Atthog PF18800.1 gi|336476914|ref|YP_004616055.1| - 0.14 12.0 3.9 0.17 11.8 3.9 1.1 1 0 0 1 1 1 0 Attenuator of Hedgehog SieB PF14163.6 gi|336476914|ref|YP_004616055.1| - 0.56 9.7 3.8 11 5.5 1.3 2.2 2 0 0 2 2 2 0 Super-infection exclusion protein B DUF4366 PF14283.6 gi|336476915|ref|YP_004616056.1| - 0.014 15.4 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) AIF-MLS PF14962.6 gi|336476915|ref|YP_004616056.1| - 0.018 15.0 0.0 0.029 14.4 0.0 1.3 1 0 0 1 1 1 0 Mitochondria Localisation Sequence DUF4748 PF15932.5 gi|336476915|ref|YP_004616056.1| - 0.052 13.3 0.1 0.092 12.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4748) DUF2663 PF10864.8 gi|336476915|ref|YP_004616056.1| - 0.13 12.7 0.0 0.26 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2663) Gram_pos_anchor PF00746.21 gi|336476915|ref|YP_004616056.1| - 1.5 8.9 6.9 0.51 10.3 0.9 2.4 2 0 0 2 2 2 0 LPXTG cell wall anchor motif ABC_tran PF00005.27 gi|336476916|ref|YP_004616057.1| - 8.6e-32 110.5 0.0 1.3e-31 110.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336476916|ref|YP_004616057.1| - 1.1e-09 38.6 0.5 6.3e-05 22.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336476916|ref|YP_004616057.1| - 5e-08 32.6 0.2 0.0011 18.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336476916|ref|YP_004616057.1| - 8.1e-05 22.3 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|336476916|ref|YP_004616057.1| - 0.00032 20.7 0.0 0.00054 19.9 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|336476916|ref|YP_004616057.1| - 0.0012 19.3 0.0 0.0015 18.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336476916|ref|YP_004616057.1| - 0.0017 18.7 0.1 0.03 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|336476916|ref|YP_004616057.1| - 0.0066 17.0 0.1 0.012 16.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|336476916|ref|YP_004616057.1| - 0.0077 16.0 0.1 0.14 11.9 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|336476916|ref|YP_004616057.1| - 0.011 15.8 0.1 0.049 13.7 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|336476916|ref|YP_004616057.1| - 0.013 15.2 0.0 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|336476916|ref|YP_004616057.1| - 0.017 15.7 0.4 0.063 13.8 0.4 2.0 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|336476916|ref|YP_004616057.1| - 0.025 13.8 0.1 0.36 10.0 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain Rad17 PF03215.15 gi|336476916|ref|YP_004616057.1| - 0.036 14.0 0.0 0.075 12.9 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain ATPase PF06745.13 gi|336476916|ref|YP_004616057.1| - 0.042 13.2 0.1 8.3 5.7 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_24 PF13479.6 gi|336476916|ref|YP_004616057.1| - 0.047 13.4 0.3 0.18 11.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|336476916|ref|YP_004616057.1| - 0.059 12.9 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|336476916|ref|YP_004616057.1| - 0.059 13.1 0.0 0.27 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|336476916|ref|YP_004616057.1| - 0.065 13.4 0.0 0.87 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|336476916|ref|YP_004616057.1| - 0.08 11.7 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein ATPase_2 PF01637.18 gi|336476916|ref|YP_004616057.1| - 0.13 12.2 0.0 0.34 10.8 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Cytidylate_kin PF02224.18 gi|336476916|ref|YP_004616057.1| - 0.14 11.9 0.1 0.23 11.2 0.1 1.3 1 0 0 1 1 1 0 Cytidylate kinase AAA_28 PF13521.6 gi|336476916|ref|YP_004616057.1| - 0.17 12.2 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|336476916|ref|YP_004616057.1| - 0.18 12.2 0.0 0.43 11.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase MacB_PCD PF12704.7 gi|336476917|ref|YP_004616058.1| - 1.7e-18 67.7 1.1 1.7e-18 67.7 1.1 2.2 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|336476917|ref|YP_004616058.1| - 2.4e-10 40.8 6.9 2.4e-10 40.8 6.9 2.8 3 0 0 3 3 3 1 FtsX-like permease family PhoLip_ATPase_C PF16212.5 gi|336476917|ref|YP_004616058.1| - 0.25 11.1 3.3 0.42 10.3 0.7 2.1 2 0 0 2 2 2 0 Phospholipid-translocating P-type ATPase C-terminal Sigma_reg_N PF13800.6 gi|336476917|ref|YP_004616058.1| - 0.25 11.6 0.1 0.25 11.6 0.1 3.4 4 0 0 4 4 4 0 Sigma factor regulator N-terminal Jagunal PF07086.12 gi|336476917|ref|YP_004616058.1| - 0.42 10.7 2.0 4.9 7.2 0.1 2.4 2 0 0 2 2 2 0 Jagunal, ER re-organisation during oogenesis Glyco_hydro_2 PF00703.21 gi|336476918|ref|YP_004616059.1| - 0.00083 20.0 1.9 1.3 9.7 0.0 2.8 2 1 0 2 2 2 2 Glycosyl hydrolases family 2 PGF-CTERM PF18204.1 gi|336476918|ref|YP_004616059.1| - 0.0036 17.2 0.2 0.0056 16.6 0.2 1.3 1 0 0 1 1 1 1 PGF-CTERM motif BsuPI PF12690.7 gi|336476918|ref|YP_004616059.1| - 0.0058 16.6 0.0 0.33 11.0 0.0 2.5 2 0 0 2 2 2 1 Intracellular proteinase inhibitor Rad60-SLD_2 PF13881.6 gi|336476918|ref|YP_004616059.1| - 0.17 12.0 0.0 0.43 10.7 0.0 1.7 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like ABC_tran PF00005.27 gi|336476919|ref|YP_004616060.1| - 1.3e-33 116.5 0.0 2e-33 115.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|336476919|ref|YP_004616060.1| - 5.4e-10 39.1 1.3 2.7e-08 33.5 1.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|336476919|ref|YP_004616060.1| - 2e-07 31.1 0.3 0.00077 19.4 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|336476919|ref|YP_004616060.1| - 1.9e-05 24.5 0.0 0.00017 21.4 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|336476919|ref|YP_004616060.1| - 4e-05 23.3 0.3 8.5e-05 22.2 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|336476919|ref|YP_004616060.1| - 0.00011 22.6 0.0 0.0002 21.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336476919|ref|YP_004616060.1| - 0.00011 22.5 1.3 0.077 13.3 0.2 2.1 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|336476919|ref|YP_004616060.1| - 0.0018 18.2 0.2 0.55 10.1 0.0 2.2 2 0 0 2 2 2 2 NTPase IstB_IS21 PF01695.17 gi|336476919|ref|YP_004616060.1| - 0.0023 17.7 0.1 1.2 8.9 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|336476919|ref|YP_004616060.1| - 0.0089 15.9 0.1 0.019 14.8 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_11 PF13086.6 gi|336476919|ref|YP_004616060.1| - 0.028 14.2 0.0 0.092 12.5 0.0 1.8 1 1 1 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|336476919|ref|YP_004616060.1| - 0.035 14.6 0.1 0.088 13.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|336476919|ref|YP_004616060.1| - 0.041 13.6 0.0 0.19 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|336476919|ref|YP_004616060.1| - 0.046 13.6 0.2 0.61 10.0 0.1 2.6 2 1 1 3 3 3 0 NACHT domain AAA_25 PF13481.6 gi|336476919|ref|YP_004616060.1| - 0.066 12.8 0.1 1.1 8.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|336476919|ref|YP_004616060.1| - 0.11 11.2 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein YhzD PF14120.6 gi|336476919|ref|YP_004616060.1| - 0.12 12.5 0.0 0.61 10.2 0.0 2.0 2 0 0 2 2 2 0 YhzD-like protein MacB_PCD PF12704.7 gi|336476920|ref|YP_004616061.1| - 5.7e-12 46.4 2.6 9.8e-12 45.6 2.6 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|336476920|ref|YP_004616061.1| - 5.8e-12 45.9 13.7 3e-11 43.6 3.7 3.2 3 0 0 3 3 3 2 FtsX-like permease family Pilin_N PF07790.11 gi|336476920|ref|YP_004616061.1| - 0.12 13.4 0.6 0.12 13.4 0.6 2.5 3 0 0 3 3 3 0 Archaeal Type IV pilin, N-terminal ABC2_membrane_2 PF12679.7 gi|336476920|ref|YP_004616061.1| - 0.56 9.4 10.1 9.8 5.4 6.5 2.4 2 1 0 2 2 2 0 ABC-2 family transporter protein Sdh_cyt PF01127.22 gi|336476920|ref|YP_004616061.1| - 1.7 8.7 5.7 0.43 10.6 0.4 2.4 2 1 0 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FeoA PF04023.14 gi|336476921|ref|YP_004616062.1| - 5.3e-11 42.6 0.0 5.3e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 FeoA domain AA_permease PF00324.21 gi|336476922|ref|YP_004616063.1| - 4.3e-55 187.2 50.3 5.6e-55 186.8 50.3 1.1 1 0 0 1 1 1 1 Amino acid permease Lactamase_B_2 PF12706.7 gi|336476923|ref|YP_004616064.1| - 4.8e-20 71.9 0.0 6.3e-20 71.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336476923|ref|YP_004616064.1| - 2.3e-10 40.8 0.6 6.3e-10 39.4 0.5 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily SnoaL_4 PF13577.6 gi|336476924|ref|YP_004616065.1| - 0.15 12.2 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 SnoaL-like domain PPDK_N PF01326.19 gi|336476925|ref|YP_004616066.1| - 1.6e-116 389.2 0.0 3e-116 388.3 0.0 1.4 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|336476925|ref|YP_004616066.1| - 8.5e-59 199.1 0.0 1.3e-58 198.4 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|336476925|ref|YP_004616066.1| - 2.5e-25 88.0 0.3 7.2e-25 86.5 0.3 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain MFS_1 PF07690.16 gi|336476927|ref|YP_004616068.1| - 4.8e-38 131.0 76.1 9e-29 100.5 42.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|336476927|ref|YP_004616068.1| - 3.3e-07 29.5 13.6 3.3e-07 29.5 13.6 3.0 1 1 2 3 3 3 1 Sugar (and other) transporter OST3_OST6 PF04756.13 gi|336476927|ref|YP_004616068.1| - 1.4 8.2 9.7 0.026 13.9 1.8 2.1 2 1 0 2 2 2 0 OST3 / OST6 family, transporter family ATPase PF06745.13 gi|336476928|ref|YP_004616069.1| - 9.9e-89 296.6 10.0 5.9e-55 186.1 7.2 2.3 2 1 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|336476928|ref|YP_004616069.1| - 1.5e-14 54.0 0.0 1.3e-06 28.1 0.0 3.4 2 2 0 2 2 2 2 AAA domain Rad51 PF08423.11 gi|336476928|ref|YP_004616069.1| - 9.5e-10 38.2 0.1 0.0015 17.8 0.0 2.5 2 0 0 2 2 2 2 Rad51 AAA_22 PF13401.6 gi|336476928|ref|YP_004616069.1| - 4.7e-09 36.6 0.1 0.0015 18.8 0.1 2.5 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|336476928|ref|YP_004616069.1| - 2.4e-08 33.6 0.1 0.0027 17.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.15 gi|336476928|ref|YP_004616069.1| - 2.8e-08 33.4 0.8 0.00079 18.8 0.0 2.7 2 1 0 2 2 2 2 DnaB-like helicase C terminal domain RecA PF00154.21 gi|336476928|ref|YP_004616069.1| - 1.1e-07 31.6 1.2 0.00014 21.4 0.1 3.2 2 1 0 2 2 2 2 recA bacterial DNA recombination protein AAA_19 PF13245.6 gi|336476928|ref|YP_004616069.1| - 2.6e-06 27.9 0.0 0.045 14.1 0.1 2.6 2 1 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|336476928|ref|YP_004616069.1| - 5.7e-06 26.4 2.8 0.0016 18.4 0.0 2.2 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea AAA PF00004.29 gi|336476928|ref|YP_004616069.1| - 1.3e-05 25.7 1.5 0.031 14.7 0.0 2.6 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|336476928|ref|YP_004616069.1| - 2.8e-05 23.9 0.5 0.12 12.1 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|336476928|ref|YP_004616069.1| - 3.8e-05 23.5 0.0 0.24 11.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|336476928|ref|YP_004616069.1| - 8.2e-05 22.6 0.2 0.094 12.8 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336476928|ref|YP_004616069.1| - 8.8e-05 22.9 0.0 0.36 11.2 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_7 PF12775.7 gi|336476928|ref|YP_004616069.1| - 0.00015 21.3 0.1 0.64 9.5 0.0 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region NACHT PF05729.12 gi|336476928|ref|YP_004616069.1| - 0.00023 21.1 0.8 0.035 14.0 0.1 2.6 2 2 0 2 2 2 1 NACHT domain AAA_11 PF13086.6 gi|336476928|ref|YP_004616069.1| - 0.00069 19.5 0.1 0.58 9.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|336476928|ref|YP_004616069.1| - 0.0008 18.9 1.2 0.78 9.2 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein PAXNEB PF05625.11 gi|336476928|ref|YP_004616069.1| - 0.0015 17.8 1.6 0.0035 16.5 0.1 2.1 3 0 0 3 3 3 1 PAXNEB protein TrwB_AAD_bind PF10412.9 gi|336476928|ref|YP_004616069.1| - 0.011 14.7 0.3 2.1 7.2 0.1 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.17 gi|336476928|ref|YP_004616069.1| - 0.013 15.2 3.8 1.4 8.6 0.0 3.4 3 1 0 4 4 4 0 IstB-like ATP binding protein DAP3 PF10236.9 gi|336476928|ref|YP_004616069.1| - 0.016 14.4 0.0 2.3 7.3 0.0 2.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Sigma54_activat PF00158.26 gi|336476928|ref|YP_004616069.1| - 0.027 14.2 0.1 5.9 6.6 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|336476928|ref|YP_004616069.1| - 0.028 14.9 0.1 3.7 8.1 0.0 2.8 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|336476928|ref|YP_004616069.1| - 0.038 14.4 0.1 2.8 8.4 0.0 2.7 2 0 0 2 2 2 0 RNA helicase Roc PF08477.13 gi|336476928|ref|YP_004616069.1| - 0.067 13.4 1.1 1.9 8.8 0.0 3.0 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase FtsK_SpoIIIE PF01580.18 gi|336476928|ref|YP_004616069.1| - 0.077 12.3 0.4 1.3 8.4 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family Helicase_RecD PF05127.14 gi|336476928|ref|YP_004616069.1| - 0.079 12.8 0.2 1 9.2 0.0 2.6 3 0 0 3 3 3 0 Helicase cobW PF02492.19 gi|336476928|ref|YP_004616069.1| - 0.09 12.4 1.6 0.36 10.4 0.1 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|336476928|ref|YP_004616069.1| - 0.09 12.9 0.0 2.1 8.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|336476928|ref|YP_004616069.1| - 0.095 12.7 0.6 3.6 7.6 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|336476928|ref|YP_004616069.1| - 0.099 12.4 1.7 6 6.7 0.1 3.1 2 1 0 2 2 2 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|336476928|ref|YP_004616069.1| - 0.12 12.0 0.0 1.4 8.5 0.0 2.2 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.7 gi|336476928|ref|YP_004616069.1| - 0.28 10.1 2.8 1.4 7.7 0.0 2.5 3 0 0 3 3 3 0 AAA-like domain Phosphodiest PF01663.22 gi|336476929|ref|YP_004616070.1| - 3e-12 46.8 0.0 6e-12 45.8 0.0 1.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|336476929|ref|YP_004616070.1| - 5.2e-09 35.9 0.0 6.9e-08 32.2 0.0 2.1 1 1 0 2 2 2 1 Sulfatase Metalloenzyme PF01676.18 gi|336476929|ref|YP_004616070.1| - 0.00019 20.9 0.2 0.0031 16.9 0.2 2.1 2 0 0 2 2 2 1 Metalloenzyme superfamily SSF PF00474.17 gi|336476931|ref|YP_004616072.1| - 6.6e-60 203.1 38.4 6.6e-60 203.1 38.4 1.4 2 0 0 2 2 2 1 Sodium:solute symporter family MoaE PF02391.17 gi|336476932|ref|YP_004616073.1| - 8.8e-24 84.0 0.0 1.5e-23 83.2 0.0 1.4 1 0 0 1 1 1 1 MoaE protein MobB PF03205.14 gi|336476932|ref|YP_004616073.1| - 2.5e-16 59.8 0.5 5.5e-16 58.7 0.5 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B UPF0128 PF03673.13 gi|336476932|ref|YP_004616073.1| - 0.0087 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0128) SDH_sah PF01972.16 gi|336476933|ref|YP_004616074.1| - 3.2e-85 285.6 1.2 3.6e-85 285.4 1.2 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|336476933|ref|YP_004616074.1| - 5.9e-05 23.0 0.1 9.7e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 Clp protease Peptidase_S49 PF01343.18 gi|336476933|ref|YP_004616074.1| - 0.001 19.1 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 DHquinase_II PF01220.19 gi|336476933|ref|YP_004616074.1| - 0.067 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Dehydroquinase class II RadC PF04002.15 gi|336476934|ref|YP_004616075.1| - 9.1e-45 151.6 0.0 1.4e-44 150.9 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain HHH_2 PF12826.7 gi|336476934|ref|YP_004616075.1| - 0.0038 17.3 0.0 0.0069 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Prok-JAB PF14464.6 gi|336476934|ref|YP_004616075.1| - 0.0044 16.8 0.0 0.0067 16.2 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain HhH-GPD PF00730.25 gi|336476934|ref|YP_004616075.1| - 0.019 15.4 0.0 0.022 15.2 0.0 1.3 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|336476934|ref|YP_004616075.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF1743 PF08489.11 gi|336476935|ref|YP_004616076.1| - 6.3e-11 42.4 0.3 7e-07 29.3 0.0 3.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1743) PHD_Oberon PF07227.11 gi|336476935|ref|YP_004616076.1| - 0.074 12.9 1.1 0.31 10.9 0.0 2.1 2 0 0 2 2 2 0 PHD - plant homeodomain finger protein TPP_enzyme_C PF02775.21 gi|336476936|ref|YP_004616077.1| - 7.8e-10 38.7 0.0 1.8e-09 37.5 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|336476936|ref|YP_004616077.1| - 6.3e-07 29.4 0.0 2e-06 27.7 0.0 1.8 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.18 gi|336476936|ref|YP_004616077.1| - 7.2e-06 25.7 0.0 0.00036 20.2 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Baculo_LEF-11 PF06385.12 gi|336476936|ref|YP_004616077.1| - 0.016 15.7 0.2 0.039 14.4 0.2 1.7 1 0 0 1 1 1 0 Baculovirus LEF-11 protein DUF123 PF01986.16 gi|336476937|ref|YP_004616078.1| - 2.3e-31 108.2 0.0 3.1e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF2103 PF09876.9 gi|336476939|ref|YP_004616080.1| - 8.5e-38 128.3 2.3 9.6e-38 128.1 2.3 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) polyprenyl_synt PF00348.17 gi|336476940|ref|YP_004616081.1| - 5.8e-70 235.3 0.0 7.5e-70 234.9 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase RMMBL PF07521.12 gi|336476941|ref|YP_004616082.1| - 1.1e-08 34.9 1.9 3.7e-08 33.2 0.2 2.5 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|336476941|ref|YP_004616082.1| - 7.5e-06 26.1 3.6 1.2e-05 25.4 1.6 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336476941|ref|YP_004616082.1| - 1.3e-05 24.8 0.7 9.7e-05 22.0 0.1 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Nkap_C PF06047.11 gi|336476941|ref|YP_004616082.1| - 0.0077 16.3 0.0 0.023 14.8 0.0 1.8 1 0 0 1 1 1 1 NF-kappa-B-activating protein C-terminal domain Prenyltransf PF01255.19 gi|336476941|ref|YP_004616082.1| - 0.051 13.1 0.0 0.073 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative undecaprenyl diphosphate synthase FMN_dh PF01070.18 gi|336476942|ref|YP_004616083.1| - 2.7e-29 102.3 0.1 1.7e-18 66.7 0.1 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|336476942|ref|YP_004616083.1| - 2.5e-07 30.0 1.7 0.0088 15.1 0.0 3.5 3 1 0 3 3 3 3 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|336476942|ref|YP_004616083.1| - 0.00059 19.3 0.1 0.001 18.5 0.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.21 gi|336476942|ref|YP_004616083.1| - 0.00067 19.0 4.5 0.0012 18.1 0.0 3.0 3 1 0 4 4 4 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.17 gi|336476942|ref|YP_004616083.1| - 0.01 15.0 0.3 0.018 14.2 0.3 1.4 1 0 0 1 1 1 0 Conserved region in glutamate synthase AA_kinase PF00696.28 gi|336476943|ref|YP_004616084.1| - 4.8e-43 147.5 2.0 5.4e-43 147.3 2.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.26 gi|336476944|ref|YP_004616085.1| - 2.1e-17 63.1 0.6 6.5e-17 61.5 0.7 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|336476944|ref|YP_004616085.1| - 2.1e-14 53.7 2.6 2.6e-14 53.3 0.2 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|336476944|ref|YP_004616085.1| - 0.002 17.7 0.2 0.0046 16.5 0.2 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Memo PF01875.17 gi|336476945|ref|YP_004616086.1| - 3.2e-79 265.9 0.1 3.6e-79 265.7 0.1 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|336476945|ref|YP_004616086.1| - 0.0051 15.9 0.0 0.0073 15.4 0.0 1.4 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Fer2_2 PF01799.20 gi|336476945|ref|YP_004616086.1| - 0.033 14.2 0.0 0.12 12.5 0.0 1.9 2 0 0 2 2 2 0 [2Fe-2S] binding domain Ribosomal_S2 PF00318.20 gi|336476946|ref|YP_004616087.1| - 7.5e-26 90.7 0.4 4.6e-15 55.4 0.4 2.4 1 1 1 2 2 2 2 Ribosomal protein S2 Tnp_P_element_C PF12596.8 gi|336476946|ref|YP_004616087.1| - 0.57 10.7 4.9 1.5 9.4 4.8 1.7 2 0 0 2 2 2 0 87kDa Transposase RNA_pol_Rpb6 PF01192.22 gi|336476947|ref|YP_004616088.1| - 6.7e-12 45.1 0.0 8.7e-12 44.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|336476948|ref|YP_004616089.1| - 7.5e-29 99.8 0.2 8.2e-29 99.7 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|336476949|ref|YP_004616090.1| - 6.9e-34 117.0 0.2 7.8e-34 116.8 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|336476950|ref|YP_004616091.1| - 2.3e-11 44.0 0.1 4.7e-09 36.6 0.1 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|336476951|ref|YP_004616092.1| - 1.4e-12 47.4 0.0 1.8e-12 47.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|336476951|ref|YP_004616092.1| - 1.7e-08 35.2 0.7 8.1e-08 33.0 0.7 1.9 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Spore_III_AB PF09548.10 gi|336476951|ref|YP_004616092.1| - 0.0018 18.4 0.0 0.0021 18.2 0.0 1.1 1 0 0 1 1 1 1 Stage III sporulation protein AB (spore_III_AB) DUF2240 PF09999.9 gi|336476952|ref|YP_004616093.1| - 4.8e-37 126.8 0.5 5.4e-37 126.6 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) XPC-binding PF09280.11 gi|336476952|ref|YP_004616093.1| - 0.014 15.1 1.1 0.032 14.0 1.1 1.5 1 1 0 1 1 1 0 XPC-binding domain 2-Hacid_dh_C PF02826.19 gi|336476954|ref|YP_004616095.1| - 8.5e-63 210.9 1.0 1.1e-62 210.6 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|336476954|ref|YP_004616095.1| - 7.6e-38 129.2 1.1 9.8e-38 128.9 0.4 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|336476954|ref|YP_004616095.1| - 1.5e-05 24.7 1.0 3.6e-05 23.5 0.1 2.2 2 0 0 2 2 2 1 ACT domain IlvN PF07991.12 gi|336476954|ref|YP_004616095.1| - 2.3e-05 24.0 0.2 0.00013 21.5 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|336476954|ref|YP_004616095.1| - 0.00085 19.5 1.8 0.0014 18.8 0.1 2.2 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.15 gi|336476954|ref|YP_004616095.1| - 0.002 18.5 0.1 0.021 15.3 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GFO_IDH_MocA PF01408.22 gi|336476954|ref|YP_004616095.1| - 0.084 13.7 0.0 0.25 12.2 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold URO-D PF01208.17 gi|336476955|ref|YP_004616096.1| - 4.4e-80 269.4 0.4 5e-80 269.2 0.4 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) RACo_C_ter PF14574.6 gi|336476956|ref|YP_004616097.1| - 5.2e-73 245.3 5.1 2.6e-72 243.0 4.9 2.2 2 1 0 2 2 2 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|336476956|ref|YP_004616097.1| - 6.9e-11 42.1 1.1 9.4e-10 38.4 0.4 3.0 2 1 0 2 2 2 1 RACo middle region Fer4 PF00037.27 gi|336476956|ref|YP_004616097.1| - 1.1e-06 28.2 9.3 0.0062 16.3 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336476956|ref|YP_004616097.1| - 2.4e-05 25.2 12.2 0.022 15.7 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|336476956|ref|YP_004616097.1| - 2.4e-05 24.4 12.7 4.6e-05 23.5 12.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476956|ref|YP_004616097.1| - 5.9e-05 23.6 13.6 0.00012 22.6 13.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476956|ref|YP_004616097.1| - 9.5e-05 22.5 14.0 0.00018 21.6 14.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476956|ref|YP_004616097.1| - 0.00075 19.8 12.2 0.079 13.5 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336476956|ref|YP_004616097.1| - 0.00087 19.3 13.2 0.02 15.0 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336476956|ref|YP_004616097.1| - 0.00089 19.3 14.5 0.43 10.7 3.7 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336476956|ref|YP_004616097.1| - 0.41 11.1 16.5 1.3 9.5 4.1 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336476956|ref|YP_004616097.1| - 0.48 10.6 15.9 0.27 11.4 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|336476956|ref|YP_004616097.1| - 0.59 11.2 15.6 0.85 10.7 3.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336476956|ref|YP_004616097.1| - 1.4 9.6 15.9 0.47 11.0 3.5 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Na_H_Exchanger PF00999.21 gi|336476957|ref|YP_004616098.1| - 2.9e-48 164.6 44.8 3.4e-48 164.4 44.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.21 gi|336476957|ref|YP_004616098.1| - 5.2e-10 39.0 0.0 1.2e-09 37.8 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain Usp PF00582.26 gi|336476958|ref|YP_004616099.1| - 4.5e-32 111.5 0.6 7.5e-32 110.8 0.6 1.4 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|336476958|ref|YP_004616099.1| - 0.0042 17.0 0.0 0.0064 16.4 0.0 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain NTP_transf_7 PF07984.12 gi|336476958|ref|YP_004616099.1| - 0.025 13.8 0.1 0.028 13.7 0.1 1.2 1 0 0 1 1 1 0 Nucleotidyltransferase GYD PF08734.11 gi|336476959|ref|YP_004616100.1| - 7.5e-27 93.1 0.0 8.1e-27 93.0 0.0 1.0 1 0 0 1 1 1 1 GYD domain AsnC_trans_reg PF01037.21 gi|336476959|ref|YP_004616100.1| - 0.00032 20.6 0.0 0.00041 20.3 0.0 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Exog_C PF18026.1 gi|336476959|ref|YP_004616100.1| - 0.046 13.8 0.3 0.096 12.8 0.3 1.6 1 1 0 1 1 1 0 Endo/exonuclease (EXOG) C-terminal domain Sucrose_synth PF00862.19 gi|336476959|ref|YP_004616100.1| - 0.09 11.1 0.0 0.1 10.9 0.0 1.0 1 0 0 1 1 1 0 Sucrose synthase tRNA-synt_2 PF00152.20 gi|336476960|ref|YP_004616101.1| - 4.6e-10 39.1 0.3 1.8e-07 30.6 0.2 2.7 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|336476960|ref|YP_004616101.1| - 2.6e-09 36.9 0.1 5.4e-08 32.6 0.1 2.3 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|336476960|ref|YP_004616101.1| - 8.2e-06 25.4 0.0 1.7e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2b PF00587.25 gi|336476960|ref|YP_004616101.1| - 0.00014 21.9 0.2 0.0018 18.3 0.1 2.5 2 1 1 3 3 3 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_His PF13393.6 gi|336476960|ref|YP_004616101.1| - 0.028 13.7 0.0 0.051 12.8 0.0 1.4 1 0 0 1 1 1 0 Histidyl-tRNA synthetase Radical_SAM PF04055.21 gi|336476961|ref|YP_004616102.1| - 6.4e-11 42.9 0.0 1.3e-10 41.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|336476961|ref|YP_004616102.1| - 0.0004 20.5 0.0 0.0011 19.1 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|336476961|ref|YP_004616102.1| - 0.0018 18.5 0.0 0.0052 17.1 0.0 1.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain BATS PF06968.13 gi|336476961|ref|YP_004616102.1| - 0.0062 16.7 0.0 0.014 15.5 0.0 1.6 1 1 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain DUF1128 PF06569.11 gi|336476961|ref|YP_004616102.1| - 0.21 11.6 1.3 3.5 7.7 0.1 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1128) ATP-grasp_3 PF02655.14 gi|336476962|ref|YP_004616103.1| - 8.9e-09 35.6 0.1 2.3e-08 34.2 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|336476962|ref|YP_004616103.1| - 5.5e-06 26.2 0.0 1.8e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.19 gi|336476962|ref|YP_004616103.1| - 0.00061 19.6 0.1 5.6 6.7 0.0 3.7 4 0 0 4 4 4 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.13 gi|336476962|ref|YP_004616103.1| - 0.0027 17.3 0.2 0.0085 15.7 0.0 2.0 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp_4 PF13535.6 gi|336476962|ref|YP_004616103.1| - 0.0029 17.2 0.7 0.9 9.1 0.1 2.9 1 1 2 3 3 3 2 ATP-grasp domain 3HCDH_N PF02737.18 gi|336476963|ref|YP_004616104.1| - 0.00042 20.3 0.0 0.00072 19.5 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|336476963|ref|YP_004616104.1| - 0.0005 20.6 0.1 0.0021 18.6 0.0 2.1 3 0 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|336476963|ref|YP_004616104.1| - 0.0011 19.2 0.0 0.002 18.3 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|336476963|ref|YP_004616104.1| - 0.0012 19.2 0.0 0.003 18.0 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|336476963|ref|YP_004616104.1| - 0.0047 17.2 0.1 0.015 15.6 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain adh_short PF00106.25 gi|336476963|ref|YP_004616104.1| - 0.0064 16.0 0.0 0.018 14.5 0.0 1.8 2 0 0 2 2 2 1 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 gi|336476963|ref|YP_004616104.1| - 0.0089 15.4 0.0 0.016 14.5 0.0 1.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|336476963|ref|YP_004616104.1| - 0.0092 15.6 0.0 0.018 14.6 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|336476963|ref|YP_004616104.1| - 0.039 13.6 0.0 0.069 12.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|336476963|ref|YP_004616104.1| - 0.047 13.0 0.0 0.093 12.0 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|336476963|ref|YP_004616104.1| - 0.088 13.1 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain HSP20 PF00011.21 gi|336476964|ref|YP_004616105.1| - 3.4e-10 40.0 0.3 1.3e-08 34.9 0.3 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|336476964|ref|YP_004616105.1| - 1.5e-08 34.1 0.0 2.2e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|336476964|ref|YP_004616105.1| - 0.0006 20.8 0.0 0.0011 20.0 0.0 1.4 1 1 0 1 1 1 1 CS domain Proton_antipo_M PF00361.20 gi|336476966|ref|YP_004616107.1| - 1.6e-67 227.8 17.9 1.6e-67 227.8 17.9 3.3 2 1 1 3 3 3 2 Proton-conducting membrane transporter DUF4040 PF13244.6 gi|336476966|ref|YP_004616107.1| - 1.1e-16 60.7 13.8 1.1e-16 60.7 13.8 3.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 gi|336476966|ref|YP_004616107.1| - 3e-10 40.0 1.2 3e-10 40.0 1.2 4.7 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MnhB PF04039.13 gi|336476967|ref|YP_004616108.1| - 1.5e-34 119.0 7.1 1.7e-34 118.8 7.1 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q2 PF00420.24 gi|336476968|ref|YP_004616109.1| - 5e-31 106.5 4.7 6.8e-31 106.0 4.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|336476969|ref|YP_004616110.1| - 1.8e-67 227.6 23.2 1.8e-67 227.6 23.2 2.2 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|336476969|ref|YP_004616110.1| - 0.0019 18.3 9.3 0.0019 18.3 9.3 3.9 4 0 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_N PF00662.20 gi|336476969|ref|YP_004616110.1| - 0.014 15.4 4.9 0.015 15.4 0.3 3.2 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MNHE PF01899.16 gi|336476970|ref|YP_004616111.1| - 7.3e-42 142.6 0.1 8.4e-42 142.4 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.13 gi|336476971|ref|YP_004616112.1| - 8.2e-18 64.6 11.7 8.2e-18 64.6 11.7 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Arteri_Gl PF00951.18 gi|336476971|ref|YP_004616112.1| - 1.3 8.8 7.8 2.2 8.1 7.8 1.3 1 1 0 1 1 1 0 Arterivirus GL envelope glycoprotein Deltameth_res PF16020.5 gi|336476971|ref|YP_004616112.1| - 2 8.4 6.4 0.27 11.1 1.6 2.0 2 1 1 3 3 3 0 Deltamethrin resistance Herpes_LMP1 PF05297.11 gi|336476971|ref|YP_004616112.1| - 3 6.9 5.1 3.2 6.9 5.1 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) PhaG_MnhG_YufB PF03334.14 gi|336476972|ref|YP_004616113.1| - 1.7e-24 85.8 8.8 2e-24 85.6 8.8 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Sua5_yciO_yrdC PF01300.18 gi|336476973|ref|YP_004616114.1| - 1.1e-54 184.7 0.1 1.6e-54 184.1 0.1 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|336476973|ref|YP_004616114.1| - 1.5e-30 106.5 0.0 2.4e-30 105.8 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Lipase PF00151.19 gi|336476974|ref|YP_004616115.1| - 0.18 11.1 0.0 0.22 10.8 0.0 1.1 1 0 0 1 1 1 0 Lipase Rhodanese PF00581.20 gi|336476975|ref|YP_004616116.1| - 7.7e-34 116.4 0.6 7.9e-19 68.2 0.1 2.4 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|336476975|ref|YP_004616116.1| - 7.6e-09 35.9 0.3 0.00032 20.8 0.0 2.7 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily LAM_C PF12544.8 gi|336476976|ref|YP_004616117.1| - 3.4e-45 153.3 0.0 5.7e-45 152.6 0.0 1.4 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.21 gi|336476976|ref|YP_004616117.1| - 3.7e-13 50.2 0.0 1e-12 48.7 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|336476976|ref|YP_004616117.1| - 0.00019 21.5 0.0 0.0012 18.9 0.0 2.2 1 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|336476976|ref|YP_004616117.1| - 0.0011 19.3 0.5 0.0048 17.2 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S single cluster domain Acetyltransf_9 PF13527.7 gi|336476977|ref|YP_004616118.1| - 2.8e-05 24.2 0.0 0.34 11.0 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336476977|ref|YP_004616118.1| - 5.9e-05 23.0 0.0 0.0002 21.3 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336476977|ref|YP_004616118.1| - 0.0056 16.9 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336476977|ref|YP_004616118.1| - 0.048 14.1 0.0 0.099 13.1 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PolC_DP2 PF03833.13 gi|336476978|ref|YP_004616119.1| - 0 1308.5 0.0 0 1307.7 0.0 1.4 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 Yeast_MT PF11403.8 gi|336476978|ref|YP_004616119.1| - 1.6 9.4 7.1 3.4 8.3 7.1 1.6 1 0 0 1 1 1 0 Yeast metallothionein DZR PF12773.7 gi|336476978|ref|YP_004616119.1| - 3.4 7.8 20.1 1.4 9.0 0.4 3.4 2 1 0 2 2 2 0 Double zinc ribbon Radical_SAM PF04055.21 gi|336476979|ref|YP_004616120.1| - 3.1e-14 53.7 4.5 1.5e-12 48.2 4.4 2.8 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|336476979|ref|YP_004616120.1| - 0.11 12.7 2.9 0.57 10.4 2.5 2.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain FAD_binding_7 PF03441.14 gi|336476980|ref|YP_004616121.1| - 3.5e-75 251.9 1.5 5.3e-75 251.3 1.5 1.3 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|336476980|ref|YP_004616121.1| - 2.2e-44 151.4 0.0 3.7e-44 150.6 0.0 1.4 1 0 0 1 1 1 1 DNA photolyase BBE PF08031.12 gi|336476980|ref|YP_004616121.1| - 0.039 14.1 3.5 6.9 6.9 0.0 4.0 3 1 1 4 4 4 0 Berberine and berberine like YdjM PF04307.14 gi|336476981|ref|YP_004616122.1| - 1e-16 60.7 3.5 1.5e-16 60.2 3.5 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF2227 PF09988.9 gi|336476981|ref|YP_004616122.1| - 0.071 13.0 1.2 1.8 8.4 0.1 2.8 2 1 1 3 3 3 0 Uncharacterized metal-binding protein (DUF2227) DUF4579 PF15158.6 gi|336476981|ref|YP_004616122.1| - 0.3 10.8 4.7 0.066 13.0 0.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4579) DUF4191 PF13829.6 gi|336476981|ref|YP_004616122.1| - 0.98 8.7 5.1 1.6 8.0 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) malic PF00390.19 gi|336476982|ref|YP_004616123.1| - 2.8e-33 115.2 0.5 5.6e-31 107.7 0.5 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|336476982|ref|YP_004616123.1| - 5.7e-25 88.1 4.4 3.6e-24 85.4 3.8 2.3 2 1 0 2 2 2 1 Malic enzyme, NAD binding domain AlaDh_PNT_C PF01262.21 gi|336476982|ref|YP_004616123.1| - 0.00028 20.2 0.6 0.00067 19.0 0.6 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|336476982|ref|YP_004616123.1| - 0.00063 19.2 0.4 0.0014 18.0 0.4 1.5 1 0 0 1 1 1 1 ThiF family F420_oxidored PF03807.17 gi|336476982|ref|YP_004616123.1| - 0.0061 17.1 0.8 0.0061 17.1 0.8 2.8 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ELFV_dehydrog PF00208.21 gi|336476982|ref|YP_004616123.1| - 0.0071 16.1 0.9 0.015 15.0 0.2 1.8 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|336476982|ref|YP_004616123.1| - 0.015 15.3 0.0 0.035 14.1 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pribosyltran_N PF13793.6 gi|336476982|ref|YP_004616123.1| - 0.017 15.1 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of ribose phosphate pyrophosphokinase Pyr_redox_2 PF07992.14 gi|336476982|ref|YP_004616123.1| - 0.022 14.0 0.5 0.11 11.7 0.2 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|336476982|ref|YP_004616123.1| - 0.03 14.4 0.3 0.082 13.0 0.2 1.8 2 0 0 2 2 1 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|336476982|ref|YP_004616123.1| - 0.072 12.3 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain DXP_synthase_N PF13292.6 gi|336476982|ref|YP_004616123.1| - 0.2 10.8 0.8 0.58 9.3 0.3 1.9 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase 2-Hacid_dh_C PF02826.19 gi|336476982|ref|YP_004616123.1| - 0.21 10.9 2.5 2 7.7 0.9 2.9 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lyase_1 PF00206.20 gi|336476983|ref|YP_004616124.1| - 4.5e-97 325.2 0.1 5.5e-97 324.9 0.1 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|336476983|ref|YP_004616124.1| - 6e-18 65.0 0.1 1.6e-17 63.6 0.1 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus FAD_binding_2 PF00890.24 gi|336476984|ref|YP_004616125.1| - 8.5e-118 394.0 0.1 1e-117 393.8 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|336476984|ref|YP_004616125.1| - 7.3e-41 139.1 0.4 1.3e-40 138.4 0.4 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|336476984|ref|YP_004616125.1| - 2.4e-09 37.3 1.8 6.5e-08 32.5 1.8 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|336476984|ref|YP_004616125.1| - 1.4e-08 33.9 0.1 0.00019 20.3 0.1 2.6 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_2 PF07992.14 gi|336476984|ref|YP_004616125.1| - 1.8e-08 34.0 0.0 2e-05 24.0 0.0 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|336476984|ref|YP_004616125.1| - 1.6e-06 27.5 0.3 0.00015 20.9 0.2 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|336476984|ref|YP_004616125.1| - 4.1e-06 26.4 0.1 0.00039 19.9 0.2 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|336476984|ref|YP_004616125.1| - 2.4e-05 23.8 0.1 0.002 17.5 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|336476984|ref|YP_004616125.1| - 0.00031 20.9 0.2 0.0012 19.0 0.2 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|336476984|ref|YP_004616125.1| - 0.0041 17.7 0.1 0.0097 16.4 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|336476984|ref|YP_004616125.1| - 0.0055 16.0 0.3 0.012 14.9 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|336476984|ref|YP_004616125.1| - 0.016 14.5 0.5 0.05 12.8 0.2 2.1 2 0 0 2 2 2 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|336476984|ref|YP_004616125.1| - 0.03 13.6 0.0 0.048 13.0 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|336476984|ref|YP_004616125.1| - 0.12 12.8 0.0 0.24 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|336476984|ref|YP_004616125.1| - 0.16 11.0 0.2 0.28 10.2 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Fer2_3 PF13085.6 gi|336476985|ref|YP_004616126.1| - 3.1e-30 104.4 0.8 4e-30 104.0 0.0 1.6 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|336476985|ref|YP_004616126.1| - 9.1e-09 35.6 3.9 9.1e-09 35.6 3.9 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336476985|ref|YP_004616126.1| - 3e-06 27.3 4.9 3e-06 27.3 4.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|336476985|ref|YP_004616126.1| - 2.3e-05 24.2 4.4 9.7e-05 22.2 0.6 2.5 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 gi|336476985|ref|YP_004616126.1| - 8.2e-05 23.1 3.0 8.2e-05 23.1 3.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336476985|ref|YP_004616126.1| - 0.00085 19.9 6.0 0.00085 19.9 6.0 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|336476985|ref|YP_004616126.1| - 0.0061 16.7 0.4 1.5 9.0 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336476985|ref|YP_004616126.1| - 0.24 11.6 14.7 0.29 11.3 9.4 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336476985|ref|YP_004616126.1| - 4.7 8.0 19.7 1.5 9.5 4.9 3.3 3 1 0 3 3 3 0 4Fe-4S binding domain RseC_MucC PF04246.12 gi|336476986|ref|YP_004616127.1| - 0.41 10.6 1.7 0.49 10.4 0.3 1.7 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC TPR_2 PF07719.17 gi|336476987|ref|YP_004616128.1| - 9.8e-36 119.0 14.6 4.2e-07 29.6 1.2 5.1 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|336476987|ref|YP_004616128.1| - 6.2e-32 108.1 16.9 1.4e-06 27.8 2.2 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|336476987|ref|YP_004616128.1| - 6.6e-25 86.5 18.6 6.2e-09 35.4 3.2 5.3 3 2 2 5 5 5 5 TPR repeat TPR_12 PF13424.6 gi|336476987|ref|YP_004616128.1| - 2.9e-22 78.8 5.8 1.6e-10 41.2 0.0 3.7 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|336476987|ref|YP_004616128.1| - 1.9e-20 73.2 0.0 3.9e-08 33.8 0.0 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|336476987|ref|YP_004616128.1| - 1.9e-20 71.3 18.1 1.5e-05 24.8 1.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|336476987|ref|YP_004616128.1| - 1.1e-19 69.5 0.0 0.0028 18.3 0.0 5.1 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|336476987|ref|YP_004616128.1| - 2.3e-16 60.0 0.9 2.4e-07 31.2 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|336476987|ref|YP_004616128.1| - 3.7e-14 52.7 4.3 2.6e-06 27.5 0.0 3.1 2 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|336476987|ref|YP_004616128.1| - 3.8e-13 49.2 6.1 0.0022 18.5 0.1 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|336476987|ref|YP_004616128.1| - 5.9e-13 47.9 6.3 0.042 13.9 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|336476987|ref|YP_004616128.1| - 9.9e-13 48.0 0.0 0.00088 19.4 0.0 3.6 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|336476987|ref|YP_004616128.1| - 2e-11 43.4 16.3 0.0011 19.2 0.0 5.9 5 1 0 5 5 5 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|336476987|ref|YP_004616128.1| - 1.1e-07 31.5 7.3 1.4 8.9 0.0 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|336476987|ref|YP_004616128.1| - 1.9e-07 31.0 1.4 0.015 15.1 0.0 2.6 2 1 1 3 3 3 2 Plant specific mitochondrial import receptor subunit TOM20 TPR_15 PF13429.6 gi|336476987|ref|YP_004616128.1| - 8.3e-07 28.5 0.0 0.0073 15.5 0.0 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat MIT PF04212.18 gi|336476987|ref|YP_004616128.1| - 1.9e-05 24.6 4.1 0.6 10.2 0.4 5.1 5 0 0 5 5 5 1 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|336476987|ref|YP_004616128.1| - 6.9e-05 23.0 2.5 0.57 10.2 0.3 4.1 2 2 1 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_MalT PF17874.1 gi|336476987|ref|YP_004616128.1| - 0.00043 19.8 0.0 0.22 10.9 0.0 2.1 1 1 1 2 2 2 2 MalT-like TPR region TPR_20 PF14561.6 gi|336476987|ref|YP_004616128.1| - 0.00063 20.0 0.0 0.69 10.3 0.0 3.2 2 1 2 4 4 4 1 Tetratricopeptide repeat TRAPPC9-Trs120 PF08626.11 gi|336476987|ref|YP_004616128.1| - 0.00094 16.7 0.0 0.0014 16.1 0.0 1.2 1 0 0 1 1 1 1 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit SHNi-TPR PF10516.9 gi|336476987|ref|YP_004616128.1| - 0.0023 17.4 0.0 2.8 7.5 0.0 3.2 3 0 0 3 3 3 1 SHNi-TPR TPR_3 PF07720.12 gi|336476987|ref|YP_004616128.1| - 0.0028 17.6 7.5 7.6 6.6 0.0 5.1 4 0 0 4 4 4 0 Tetratricopeptide repeat NARP1 PF12569.8 gi|336476987|ref|YP_004616128.1| - 0.0044 16.0 7.6 0.028 13.3 0.8 2.9 1 1 1 3 3 3 1 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|336476987|ref|YP_004616128.1| - 0.013 16.0 0.0 0.21 12.0 0.0 2.5 2 1 0 3 3 3 0 Bacterial transcriptional activator domain PPTA PF01239.22 gi|336476987|ref|YP_004616128.1| - 0.017 14.8 0.4 1.2 8.9 0.0 3.4 3 0 0 3 3 3 0 Protein prenyltransferase alpha subunit repeat Paf67 PF10255.9 gi|336476987|ref|YP_004616128.1| - 0.027 13.5 4.6 0.44 9.5 0.1 2.9 2 1 0 3 3 3 0 RNA polymerase I-associated factor PAF67 DUF2225 PF09986.9 gi|336476987|ref|YP_004616128.1| - 0.036 13.8 6.3 0.23 11.2 1.8 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) RICTOR_V PF14668.6 gi|336476987|ref|YP_004616128.1| - 0.064 13.5 0.0 0.27 11.5 0.0 2.0 2 0 0 2 2 2 0 Rapamycin-insensitive companion of mTOR, domain 5 TPR_5 PF12688.7 gi|336476987|ref|YP_004616128.1| - 0.071 13.4 0.0 13 6.0 0.0 2.8 2 1 1 3 3 3 0 Tetratrico peptide repeat SPO22 PF08631.10 gi|336476987|ref|YP_004616128.1| - 1.7 8.0 3.8 3.6 7.0 0.4 2.9 3 2 1 4 4 4 0 Meiosis protein SPO22/ZIP4 like Fis1_TPR_C PF14853.6 gi|336476987|ref|YP_004616128.1| - 2.7 8.1 12.4 1.5 8.9 1.0 4.3 5 0 0 5 5 5 0 Fis1 C-terminal tetratricopeptide repeat DUF4870 PF09685.10 gi|336476988|ref|YP_004616129.1| - 3.4e-05 23.9 6.9 4.6e-05 23.5 6.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) TIC20 PF16166.5 gi|336476988|ref|YP_004616129.1| - 0.05 13.4 2.9 0.081 12.7 2.9 1.3 1 1 0 1 1 1 0 Chloroplast import apparatus Tic20-like NPCC PF08058.11 gi|336476988|ref|YP_004616129.1| - 0.15 12.1 0.4 0.25 11.4 0.2 1.5 1 1 0 1 1 1 0 Nuclear pore complex component FUSC-like PF12805.7 gi|336476988|ref|YP_004616129.1| - 0.55 9.3 3.7 0.63 9.1 3.7 1.1 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS DUF4064 PF13273.6 gi|336476988|ref|YP_004616129.1| - 1.1 9.5 12.8 2.9 8.2 12.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) TMEM43 PF07787.12 gi|336476988|ref|YP_004616129.1| - 1.5 8.1 3.0 1.9 7.8 3.0 1.2 1 0 0 1 1 1 0 Transmembrane protein 43 Peptidase_U4 PF03419.13 gi|336476989|ref|YP_004616130.1| - 0.058 12.7 8.0 0.086 12.1 8.0 1.3 1 0 0 1 1 1 0 Sporulation factor SpoIIGA PalH PF08733.10 gi|336476989|ref|YP_004616130.1| - 0.09 11.8 6.4 0.13 11.2 6.4 1.2 1 0 0 1 1 1 0 PalH/RIM21 PGPGW PF09656.10 gi|336476989|ref|YP_004616130.1| - 0.12 11.9 6.5 2.6 7.6 0.1 3.1 3 0 0 3 3 3 0 Putative transmembrane protein (PGPGW) FMN_red PF03358.15 gi|336476990|ref|YP_004616131.1| - 3.2e-18 65.9 0.0 5.3e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|336476990|ref|YP_004616131.1| - 2.2e-09 37.3 0.0 3.2e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Aldedh PF00171.22 gi|336476991|ref|YP_004616132.1| - 2.6e-140 468.0 0.0 2.9e-140 467.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Pox_A21 PF05323.12 gi|336476991|ref|YP_004616132.1| - 0.069 13.7 0.3 0.16 12.6 0.3 1.5 1 0 0 1 1 1 0 Poxvirus A21 Protein FMN_red PF03358.15 gi|336476992|ref|YP_004616133.1| - 1.2e-17 64.1 0.0 1.9e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase DUF4233 PF14017.6 gi|336476993|ref|YP_004616134.1| - 0.012 15.9 2.8 0.024 15.0 2.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) Wzy_C PF04932.15 gi|336476993|ref|YP_004616134.1| - 0.037 13.7 0.2 0.04 13.6 0.2 1.1 1 0 0 1 1 1 0 O-Antigen ligase Polysacc_deac_1 PF01522.21 gi|336476993|ref|YP_004616134.1| - 0.044 13.7 0.0 0.048 13.6 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide deacetylase DUF2238 PF09997.9 gi|336476993|ref|YP_004616134.1| - 0.048 13.4 0.2 0.069 13.0 0.2 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2238) RseC_MucC PF04246.12 gi|336476993|ref|YP_004616134.1| - 0.06 13.3 1.6 0.1 12.5 1.6 1.4 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC UbiA PF01040.18 gi|336476993|ref|YP_004616134.1| - 0.42 9.9 4.8 0.54 9.5 4.8 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family PhoR PF11808.8 gi|336476993|ref|YP_004616134.1| - 0.76 10.2 2.9 0.84 10.1 2.2 1.4 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR UPF0697 PF15117.6 gi|336476994|ref|YP_004616135.1| - 0.039 14.0 0.1 0.085 12.9 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0697 DUF2207 PF09972.9 gi|336476994|ref|YP_004616135.1| - 3 6.5 5.5 3.5 6.3 5.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SUR7 PF06687.12 gi|336476994|ref|YP_004616135.1| - 5 6.7 9.6 7.5 6.1 9.6 1.3 1 0 0 1 1 1 0 SUR7/PalI family zf-C2H2 PF00096.26 gi|336476995|ref|YP_004616136.1| - 7.5e-07 29.3 0.3 1.2e-06 28.7 0.3 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|336476995|ref|YP_004616136.1| - 1.2e-05 25.7 0.5 2.2e-05 24.9 0.5 1.5 1 0 0 1 1 1 1 C2H2-type zinc finger zf-met PF12874.7 gi|336476995|ref|YP_004616136.1| - 7.1e-05 23.1 0.2 0.00015 22.1 0.2 1.5 1 0 0 1 1 1 1 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 gi|336476995|ref|YP_004616136.1| - 0.00055 20.1 1.8 0.00055 20.1 1.8 1.7 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 gi|336476995|ref|YP_004616136.1| - 0.0036 17.6 2.8 0.0036 17.6 2.8 1.1 1 0 0 1 1 1 1 C2H2 type zinc-finger (2 copies) zf-C2H2_6 PF13912.6 gi|336476995|ref|YP_004616136.1| - 0.0066 16.4 2.8 0.012 15.6 2.8 1.5 1 1 0 1 1 1 1 C2H2-type zinc finger Actin_micro PF17003.5 gi|336476995|ref|YP_004616136.1| - 0.033 13.4 3.5 0.033 13.4 3.5 1.0 1 0 0 1 1 1 0 Putative actin-like family DUF629 PF04780.12 gi|336476995|ref|YP_004616136.1| - 0.047 12.2 3.0 0.049 12.2 3.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF629) DUF3449 PF11931.8 gi|336476995|ref|YP_004616136.1| - 0.053 13.3 2.0 0.054 13.3 2.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) zf-H2C2_2 PF13465.6 gi|336476995|ref|YP_004616136.1| - 0.094 13.2 4.8 0.49 10.9 0.5 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Glyco_hydro_15 PF00723.21 gi|336476996|ref|YP_004616137.1| - 7.2e-19 67.9 0.1 2.2e-13 49.8 0.0 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 Pyrophosphatase PF00719.19 gi|336476998|ref|YP_004616139.1| - 1.6e-53 180.8 0.1 1.9e-53 180.6 0.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DDE_Tnp_IS1595 PF12762.7 gi|336476998|ref|YP_004616139.1| - 0.011 15.8 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 ISXO2-like transposase domain HTH_38 PF13936.6 gi|336476999|ref|YP_004616140.1| - 0.049 13.4 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain SufE PF02657.15 gi|336477000|ref|YP_004616141.1| - 3.2e-39 133.6 0.0 3.6e-39 133.4 0.0 1.0 1 0 0 1 1 1 1 Fe-S metabolism associated domain Aminotran_5 PF00266.19 gi|336477001|ref|YP_004616142.1| - 3.7e-127 424.3 0.0 4.2e-127 424.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|336477001|ref|YP_004616142.1| - 1.2e-10 41.1 0.0 1.5e-10 40.8 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|336477001|ref|YP_004616142.1| - 9.3e-07 28.5 0.1 1.5e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|336477001|ref|YP_004616142.1| - 1.8e-05 23.5 0.1 2.7e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SepSecS PF05889.13 gi|336477001|ref|YP_004616142.1| - 2.3e-05 23.3 0.2 5.4e-05 22.1 0.2 1.6 1 1 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Beta_elim_lyase PF01212.21 gi|336477001|ref|YP_004616142.1| - 0.0033 16.7 0.0 0.0042 16.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.19 gi|336477001|ref|YP_004616142.1| - 0.12 11.1 0.1 0.2 10.4 0.1 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Methyltransf_33 PF10017.9 gi|336477002|ref|YP_004616143.1| - 2e-97 326.1 0.0 2.3e-97 325.9 0.0 1.0 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Stap_Strp_tox_C PF02876.17 gi|336477002|ref|YP_004616143.1| - 0.056 13.8 0.6 0.098 13.0 0.6 1.4 1 0 0 1 1 1 0 Staphylococcal/Streptococcal toxin, beta-grasp domain Rhodanese PF00581.20 gi|336477003|ref|YP_004616144.1| - 1.2e-37 128.7 4.4 3.2e-13 50.1 0.1 4.6 3 1 1 4 4 4 3 Rhodanese-like domain Nup35_RRM_2 PF14605.6 gi|336477003|ref|YP_004616144.1| - 0.15 12.1 0.2 0.53 10.3 0.0 2.0 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif Terminase_5 PF06056.12 gi|336477004|ref|YP_004616145.1| - 4.3e-07 29.7 0.0 5.6e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.6 gi|336477004|ref|YP_004616145.1| - 1.5e-05 24.7 0.0 2e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain Zn_Tnp_IS1595 PF12760.7 gi|336477004|ref|YP_004616145.1| - 0.00032 20.6 3.4 0.00049 20.0 3.4 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain HTH_28 PF13518.6 gi|336477004|ref|YP_004616145.1| - 0.00059 19.9 0.0 0.00088 19.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|336477004|ref|YP_004616145.1| - 0.0017 18.1 5.3 0.0026 17.4 5.3 1.3 1 0 0 1 1 1 1 InsA N-terminal domain DUF2387 PF09526.10 gi|336477004|ref|YP_004616145.1| - 0.0028 17.8 0.4 0.0045 17.1 0.4 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) HTH_38 PF13936.6 gi|336477004|ref|YP_004616145.1| - 0.0084 15.9 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TnsD PF15978.5 gi|336477004|ref|YP_004616145.1| - 0.031 13.3 0.1 0.06 12.3 0.1 1.5 1 1 0 1 1 1 0 Tn7-like transposition protein D Zn-ribbon_8 PF09723.10 gi|336477004|ref|YP_004616145.1| - 0.031 14.4 2.0 0.8 9.9 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Sigma70_r4_2 PF08281.12 gi|336477004|ref|YP_004616145.1| - 0.034 13.8 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 zf-Mss51 PF13824.6 gi|336477004|ref|YP_004616145.1| - 0.042 14.0 1.3 0.083 13.0 1.3 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Elf1 PF05129.13 gi|336477004|ref|YP_004616145.1| - 0.043 13.9 0.5 0.081 13.0 0.5 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|336477004|ref|YP_004616145.1| - 0.053 13.9 0.4 0.073 13.5 0.4 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.12 gi|336477004|ref|YP_004616145.1| - 0.082 12.9 0.9 0.14 12.2 0.9 1.4 1 0 0 1 1 1 0 zinc-ribbons HTH_29 PF13551.6 gi|336477004|ref|YP_004616145.1| - 0.087 12.9 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TIG_2 PF18020.1 gi|336477004|ref|YP_004616145.1| - 0.1 13.2 0.0 0.17 12.5 0.0 1.3 1 0 0 1 1 1 0 TIG domain found in plexin zf-TFIIB PF13453.6 gi|336477004|ref|YP_004616145.1| - 0.41 10.0 2.2 0.93 8.9 2.2 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.11 gi|336477004|ref|YP_004616145.1| - 0.92 9.5 4.8 1.9 8.5 2.6 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Rubredoxin PF00301.20 gi|336477004|ref|YP_004616145.1| - 2.3 8.3 5.5 2.4 8.2 0.8 2.2 2 0 0 2 2 2 0 Rubredoxin TFIIS_C PF01096.18 gi|336477004|ref|YP_004616145.1| - 3.4 7.6 5.6 5.9 6.8 0.6 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin_2 PF18073.1 gi|336477004|ref|YP_004616145.1| - 8.8 6.2 9.6 1.5 8.7 1.9 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF1638 PF07796.11 gi|336477005|ref|YP_004616146.1| - 2.1e-31 109.2 0.0 3.5e-31 108.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) MFS_1 PF07690.16 gi|336477006|ref|YP_004616147.1| - 7.6e-46 156.7 53.6 7.6e-46 156.7 53.6 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|336477006|ref|YP_004616147.1| - 1e-07 30.8 22.6 1.6e-07 30.1 22.6 1.3 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 gi|336477006|ref|YP_004616147.1| - 2.4e-07 30.0 15.8 2.4e-07 30.0 15.8 3.2 1 1 1 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|336477006|ref|YP_004616147.1| - 2.2e-06 26.5 5.3 2.2e-06 26.5 5.3 2.6 2 1 1 3 3 3 1 MFS/sugar transport protein MFS_1_like PF12832.7 gi|336477006|ref|YP_004616147.1| - 0.0011 17.9 37.6 0.0026 16.7 37.6 1.6 1 1 0 1 1 1 1 MFS_1 like family MFS_4 PF06779.14 gi|336477006|ref|YP_004616147.1| - 0.033 13.5 28.9 0.23 10.7 28.5 2.0 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB UPF0047 PF01894.17 gi|336477007|ref|YP_004616148.1| - 2e-37 127.9 0.0 2.3e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DDE_Tnp_1 PF01609.21 gi|336477009|ref|YP_004616150.1| - 2e-06 27.6 3.9 4.6e-06 26.4 3.9 1.6 1 1 0 1 1 1 1 Transposase DDE domain HisKA_7TM PF16927.5 gi|336477011|ref|YP_004616152.1| - 1.2e-46 159.5 24.7 1.6e-46 159.1 24.7 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HisKA_2 PF07568.12 gi|336477011|ref|YP_004616152.1| - 1.8e-25 88.8 3.5 4.6e-25 87.5 3.5 1.8 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.12 gi|336477011|ref|YP_004616152.1| - 4.7e-17 62.1 0.1 2.5e-16 59.7 0.0 2.2 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|336477011|ref|YP_004616152.1| - 2.2e-09 37.3 0.4 0.00013 22.0 0.4 3.3 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|336477011|ref|YP_004616152.1| - 4.6e-09 36.1 0.0 1.1e-07 31.7 0.0 2.5 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.26 gi|336477011|ref|YP_004616152.1| - 3.6e-08 33.9 0.0 1e-07 32.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|336477011|ref|YP_004616152.1| - 1.5e-07 31.6 1.9 0.00014 22.1 0.3 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|336477011|ref|YP_004616152.1| - 1.7e-07 31.2 0.0 3.1e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|336477011|ref|YP_004616152.1| - 1.5e-06 28.8 0.3 2.7e-06 28.0 0.3 1.4 1 0 0 1 1 1 1 HWE histidine kinase PAS_4 PF08448.10 gi|336477011|ref|YP_004616152.1| - 5.6e-05 23.4 0.0 9 6.6 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_7 PF12860.7 gi|336477011|ref|YP_004616152.1| - 0.0019 18.3 0.1 0.043 14.0 0.1 2.4 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.6 gi|336477011|ref|YP_004616152.1| - 0.0068 16.1 1.6 0.023 14.4 1.6 1.9 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_10 PF13596.6 gi|336477011|ref|YP_004616152.1| - 0.022 15.3 0.0 0.12 13.0 0.0 2.3 2 0 0 2 2 1 0 PAS domain DUF2769 PF10967.8 gi|336477012|ref|YP_004616153.1| - 4.7e-21 75.2 13.6 6.2e-21 74.8 13.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) Prismane PF03063.20 gi|336477013|ref|YP_004616154.1| - 7.2e-173 575.9 0.0 8.6e-173 575.7 0.0 1.1 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family SNARE_assoc PF09335.11 gi|336477014|ref|YP_004616155.1| - 3.6e-08 33.9 4.7 3.6e-08 33.9 4.7 2.1 1 1 1 2 2 2 1 SNARE associated Golgi protein Tmemb_55A PF09788.9 gi|336477014|ref|YP_004616155.1| - 3.6 6.6 4.8 5.7 5.9 4.8 1.3 1 0 0 1 1 1 0 Transmembrane protein 55A Ferric_reduct PF01794.19 gi|336477015|ref|YP_004616156.1| - 1.1e-05 25.6 8.5 1.1e-05 25.6 8.5 2.7 2 1 1 3 3 3 1 Ferric reductase like transmembrane component SLATT_3 PF18184.1 gi|336477015|ref|YP_004616156.1| - 0.035 14.3 3.7 0.12 12.5 0.1 2.2 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 RseC_MucC PF04246.12 gi|336477015|ref|YP_004616156.1| - 5 7.1 13.7 0.14 12.1 1.0 2.6 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Insulin_TMD PF17870.1 gi|336477015|ref|YP_004616156.1| - 7.9 6.6 10.4 6.1 7.0 0.4 3.0 3 0 0 3 3 3 0 Insulin receptor trans-membrane segment Phosphorylase PF00343.20 gi|336477016|ref|YP_004616157.1| - 8.1e-30 103.7 0.5 2.9e-20 72.2 0.0 3.1 3 1 1 4 4 4 2 Carbohydrate phosphorylase DS PF01916.17 gi|336477017|ref|YP_004616158.1| - 9.4e-105 350.0 0.2 1.1e-104 349.8 0.2 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase ArsR PF09824.9 gi|336477018|ref|YP_004616159.1| - 3e-66 221.9 0.1 3.4e-66 221.8 0.1 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator SMC_ScpB PF04079.16 gi|336477018|ref|YP_004616159.1| - 0.027 14.1 0.0 0.14 11.8 0.0 1.9 1 1 1 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_24 PF13412.6 gi|336477019|ref|YP_004616160.1| - 3.4e-12 45.7 0.3 8.9e-12 44.4 0.0 1.9 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336477019|ref|YP_004616160.1| - 2.2e-09 37.1 0.0 6.7e-09 35.5 0.0 1.8 2 0 0 2 2 1 1 MarR family MarR PF01047.22 gi|336477019|ref|YP_004616160.1| - 6.1e-09 35.7 0.0 3.1e-08 33.4 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|336477019|ref|YP_004616160.1| - 4.8e-07 29.6 0.2 1.4e-06 28.2 0.1 1.8 2 0 0 2 2 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|336477019|ref|YP_004616160.1| - 1.3e-06 28.2 0.1 4.2e-06 26.6 0.0 1.9 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|336477019|ref|YP_004616160.1| - 1.5e-05 25.2 0.0 3.6e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.6 gi|336477019|ref|YP_004616160.1| - 3.7e-05 24.1 0.0 8.9e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|336477019|ref|YP_004616160.1| - 4.3e-05 23.2 0.0 0.00017 21.3 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|336477019|ref|YP_004616160.1| - 6.7e-05 22.8 0.1 0.00014 21.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_3 PF01381.22 gi|336477019|ref|YP_004616160.1| - 9.3e-05 22.4 0.1 0.0017 18.4 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_28 PF13518.6 gi|336477019|ref|YP_004616160.1| - 0.00057 20.0 0.1 0.0018 18.4 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336477019|ref|YP_004616160.1| - 0.0008 19.6 0.0 0.0024 18.0 0.0 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|336477019|ref|YP_004616160.1| - 0.0015 18.3 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Mnd1 PF03962.15 gi|336477019|ref|YP_004616160.1| - 0.0016 18.7 0.1 0.0088 16.3 0.0 2.1 2 0 0 2 2 2 1 Mnd1 HTH domain HTH_23 PF13384.6 gi|336477019|ref|YP_004616160.1| - 0.0017 18.1 0.0 0.0038 17.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.19 gi|336477019|ref|YP_004616160.1| - 0.0028 17.5 0.0 0.0067 16.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.6 gi|336477019|ref|YP_004616160.1| - 0.0044 17.1 0.1 0.051 13.7 0.1 2.3 1 1 0 1 1 1 1 Mrr N-terminal domain HTH_5 PF01022.20 gi|336477019|ref|YP_004616160.1| - 0.0046 16.8 0.0 0.012 15.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_13 PF11972.8 gi|336477019|ref|YP_004616160.1| - 0.0048 16.9 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_36 PF13730.6 gi|336477019|ref|YP_004616160.1| - 0.0078 16.2 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|336477019|ref|YP_004616160.1| - 0.011 15.5 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HxlR PF01638.17 gi|336477019|ref|YP_004616160.1| - 0.012 15.4 0.0 0.031 14.1 0.0 1.7 1 0 0 1 1 1 0 HxlR-like helix-turn-helix GntR PF00392.21 gi|336477019|ref|YP_004616160.1| - 0.013 15.1 0.0 0.045 13.4 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Phage_rep_O PF04492.13 gi|336477019|ref|YP_004616160.1| - 0.02 15.5 0.0 0.055 14.1 0.0 1.7 1 0 0 1 1 1 0 Bacteriophage replication protein O LexA_DNA_bind PF01726.16 gi|336477019|ref|YP_004616160.1| - 0.025 14.3 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain YdaS_antitoxin PF15943.5 gi|336477019|ref|YP_004616160.1| - 0.064 13.1 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF4364 PF14277.6 gi|336477019|ref|YP_004616160.1| - 0.089 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Sigma70_r4_2 PF08281.12 gi|336477019|ref|YP_004616160.1| - 0.093 12.4 0.1 0.43 10.3 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 FaeA PF04703.12 gi|336477019|ref|YP_004616160.1| - 0.1 13.0 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein SMC_ScpB PF04079.16 gi|336477019|ref|YP_004616160.1| - 0.11 12.2 0.1 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB HTH_AsnC-type PF13404.6 gi|336477019|ref|YP_004616160.1| - 0.13 12.1 0.0 0.59 10.0 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain YjhX_toxin PF09857.9 gi|336477019|ref|YP_004616160.1| - 0.13 12.2 0.0 0.41 10.6 0.0 1.8 2 0 0 2 2 2 0 Putative toxin of bacterial toxin-antitoxin pair Metallophos_2 PF12850.7 gi|336477020|ref|YP_004616161.1| - 3.4e-27 95.6 0.0 4e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|336477020|ref|YP_004616161.1| - 0.00046 20.7 0.8 0.049 14.1 0.1 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Pox_polyA_pol_N PF12630.7 gi|336477023|ref|YP_004616164.1| - 0.044 14.1 1.1 0.085 13.2 1.1 1.5 1 0 0 1 1 1 0 Poxvirus poly(A) polymerase N-terminal domain DUF1493 PF07377.12 gi|336477023|ref|YP_004616164.1| - 0.083 13.4 0.2 0.26 11.8 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1493) TM_helix PF05552.12 gi|336477024|ref|YP_004616165.1| - 5.9e-20 71.0 43.1 6.2e-11 42.1 4.2 5.1 5 0 0 5 5 5 3 Conserved TM helix TauE PF01925.19 gi|336477025|ref|YP_004616166.1| - 5.7e-30 104.7 29.3 7e-30 104.4 29.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE LigD_N PF13298.6 gi|336477026|ref|YP_004616167.1| - 1.1e-40 138.1 0.0 1.6e-40 137.6 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) GTP_EFTU_D4 PF14578.6 gi|336477026|ref|YP_004616167.1| - 0.11 12.4 0.4 0.17 11.8 0.4 1.4 1 0 0 1 1 1 0 Elongation factor Tu domain 4 SfsA PF03749.13 gi|336477027|ref|YP_004616168.1| - 2.8e-38 130.9 0.0 3.6e-38 130.6 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|336477027|ref|YP_004616168.1| - 1e-20 73.6 0.2 1.8e-20 72.9 0.2 1.4 1 0 0 1 1 1 1 SfsA N-terminal OB domain Methyltransf_31 PF13847.6 gi|336477028|ref|YP_004616169.1| - 2.8e-22 79.1 0.0 5e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336477028|ref|YP_004616169.1| - 3e-22 79.1 0.0 5e-22 78.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336477028|ref|YP_004616169.1| - 1.1e-20 74.1 0.0 1.9e-20 73.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336477028|ref|YP_004616169.1| - 1.4e-19 70.5 0.0 8.5e-19 68.0 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336477028|ref|YP_004616169.1| - 5.3e-17 62.4 0.0 8.6e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336477028|ref|YP_004616169.1| - 1.4e-14 54.0 0.1 6.2e-14 51.9 0.0 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|336477028|ref|YP_004616169.1| - 2.4e-09 37.0 0.0 6.4e-09 35.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|336477028|ref|YP_004616169.1| - 1e-07 31.6 0.1 1.8e-07 30.8 0.1 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_8 PF05148.15 gi|336477028|ref|YP_004616169.1| - 1.9e-06 27.9 0.1 4.6e-05 23.4 0.1 2.2 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|336477028|ref|YP_004616169.1| - 1.4e-05 24.5 0.0 2.5e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|336477028|ref|YP_004616169.1| - 6.1e-05 22.5 0.1 0.00011 21.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|336477028|ref|YP_004616169.1| - 7.1e-05 22.5 0.0 0.00013 21.7 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) N2227 PF07942.12 gi|336477028|ref|YP_004616169.1| - 0.00016 20.9 0.2 0.19 10.9 0.0 2.3 1 1 1 2 2 2 2 N2227-like protein N6_Mtase PF02384.16 gi|336477028|ref|YP_004616169.1| - 0.0003 20.2 0.2 0.00055 19.3 0.2 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase DREV PF05219.12 gi|336477028|ref|YP_004616169.1| - 0.00031 19.9 0.0 0.00048 19.3 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_PK PF05891.12 gi|336477028|ref|YP_004616169.1| - 0.00059 19.4 0.0 0.0012 18.4 0.0 1.4 2 0 0 2 2 2 1 AdoMet dependent proline di-methyltransferase DOT1 PF08123.13 gi|336477028|ref|YP_004616169.1| - 0.0016 18.0 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 PCMT PF01135.19 gi|336477028|ref|YP_004616169.1| - 0.0017 18.1 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|336477028|ref|YP_004616169.1| - 0.0024 17.8 0.0 0.0042 17.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.17 gi|336477028|ref|YP_004616169.1| - 0.0036 16.7 0.1 0.011 15.2 0.1 1.9 1 1 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_29 PF03141.16 gi|336477028|ref|YP_004616169.1| - 0.0047 15.6 0.0 0.0065 15.1 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_32 PF13679.6 gi|336477028|ref|YP_004616169.1| - 0.0053 16.8 0.0 0.0076 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|336477028|ref|YP_004616169.1| - 0.0059 15.6 0.0 0.0087 15.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|336477028|ref|YP_004616169.1| - 0.006 16.2 0.0 0.0096 15.5 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Cons_hypoth95 PF03602.15 gi|336477028|ref|YP_004616169.1| - 0.038 13.6 0.0 0.059 13.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 RrnaAD PF00398.20 gi|336477028|ref|YP_004616169.1| - 0.075 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase UPF0020 PF01170.18 gi|336477028|ref|YP_004616169.1| - 0.083 12.6 0.1 0.2 11.3 0.1 1.6 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_2 PF00891.18 gi|336477028|ref|YP_004616169.1| - 0.084 12.2 0.1 0.76 9.0 0.0 2.2 1 1 0 1 1 1 0 O-methyltransferase domain TrmO PF01980.16 gi|336477028|ref|YP_004616169.1| - 0.13 12.4 0.0 0.71 10.1 0.0 2.1 2 0 0 2 2 2 0 tRNA-methyltransferase O DUF92 PF01940.16 gi|336477029|ref|YP_004616170.1| - 4.3e-55 186.7 18.7 4.3e-55 186.7 18.7 2.9 2 1 0 2 2 2 2 Integral membrane protein DUF92 DUF1729 PF08354.10 gi|336477029|ref|YP_004616170.1| - 0.21 10.5 0.0 0.31 9.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1729) Prok-JAB PF14464.6 gi|336477030|ref|YP_004616171.1| - 1.3e-09 37.9 0.0 1.6e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|336477030|ref|YP_004616171.1| - 0.0038 17.2 0.0 0.0055 16.7 0.0 1.4 1 0 0 1 1 1 1 RadC-like JAB domain DUF2099 PF09872.9 gi|336477031|ref|YP_004616172.1| - 3.8e-112 373.7 2.0 4.3e-112 373.5 2.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) AMP-binding_C_2 PF14535.6 gi|336477033|ref|YP_004616174.1| - 4.1e-27 94.3 1.6 7.4e-27 93.5 0.9 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|336477033|ref|YP_004616174.1| - 2.4e-15 56.1 0.0 1.5e-14 53.4 0.0 1.9 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|336477033|ref|YP_004616174.1| - 0.0065 15.5 0.1 0.69 8.9 0.0 2.5 2 1 0 2 2 2 2 Acyl-protein synthetase, LuxE ABC_tran PF00005.27 gi|336477034|ref|YP_004616175.1| - 1.8e-31 109.5 0.1 3.4e-31 108.6 0.0 1.5 2 0 0 2 2 1 1 ABC transporter SMC_N PF02463.19 gi|336477034|ref|YP_004616175.1| - 4.3e-06 26.3 0.2 9.6e-06 25.2 0.2 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|336477034|ref|YP_004616175.1| - 5.9e-06 26.6 1.4 5.7e-05 23.4 1.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|336477034|ref|YP_004616175.1| - 2e-05 24.6 0.6 0.15 11.9 0.3 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system IstB_IS21 PF01695.17 gi|336477034|ref|YP_004616175.1| - 0.00018 21.3 0.2 0.0019 18.0 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|336477034|ref|YP_004616175.1| - 0.00048 20.1 0.1 0.00099 19.0 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|336477034|ref|YP_004616175.1| - 0.00051 20.5 0.0 0.00094 19.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|336477034|ref|YP_004616175.1| - 0.00059 19.7 0.0 0.0011 18.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain oligo_HPY PF08352.12 gi|336477034|ref|YP_004616175.1| - 0.00095 19.6 0.0 0.0022 18.5 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region ATP-synt_ab PF00006.25 gi|336477034|ref|YP_004616175.1| - 0.0018 18.0 0.0 0.0018 18.0 0.0 1.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.6 gi|336477034|ref|YP_004616175.1| - 0.0019 18.8 0.6 0.01 16.4 0.0 2.2 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|336477034|ref|YP_004616175.1| - 0.0024 17.6 0.1 0.0062 16.2 0.0 1.7 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.12 gi|336477034|ref|YP_004616175.1| - 0.0029 17.6 0.0 0.0054 16.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|336477034|ref|YP_004616175.1| - 0.004 17.6 0.8 0.016 15.6 0.5 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|336477034|ref|YP_004616175.1| - 0.0047 17.0 0.2 0.033 14.3 0.0 2.3 2 1 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|336477034|ref|YP_004616175.1| - 0.0063 15.9 0.0 0.018 14.4 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|336477034|ref|YP_004616175.1| - 0.0076 16.8 0.4 0.15 12.7 0.4 2.3 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|336477034|ref|YP_004616175.1| - 0.0094 15.9 0.6 0.042 13.8 0.6 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|336477034|ref|YP_004616175.1| - 0.0096 15.3 0.6 1.4 8.2 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein T2SSE PF00437.20 gi|336477034|ref|YP_004616175.1| - 0.011 14.8 0.1 0.029 13.4 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein CbiA PF01656.23 gi|336477034|ref|YP_004616175.1| - 0.011 15.7 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 gi|336477034|ref|YP_004616175.1| - 0.012 15.4 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|336477034|ref|YP_004616175.1| - 0.013 15.5 1.3 1.7 8.7 0.0 2.3 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit PduV-EutP PF10662.9 gi|336477034|ref|YP_004616175.1| - 0.021 14.5 0.1 0.16 11.7 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Rad17 PF03215.15 gi|336477034|ref|YP_004616175.1| - 0.022 14.7 0.0 0.042 13.8 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain MobB PF03205.14 gi|336477034|ref|YP_004616175.1| - 0.026 14.4 0.1 0.061 13.2 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|336477034|ref|YP_004616175.1| - 0.028 13.6 0.2 0.1 11.8 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.22 gi|336477034|ref|YP_004616175.1| - 0.031 14.6 0.0 0.18 12.2 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.14 gi|336477034|ref|YP_004616175.1| - 0.039 13.9 0.1 0.15 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|336477034|ref|YP_004616175.1| - 0.05 13.8 0.0 0.084 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|336477034|ref|YP_004616175.1| - 0.052 13.0 0.1 0.23 10.9 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein MMR_HSR1 PF01926.23 gi|336477034|ref|YP_004616175.1| - 0.055 13.5 0.1 0.11 12.6 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase PRK PF00485.18 gi|336477034|ref|YP_004616175.1| - 0.081 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.6 gi|336477034|ref|YP_004616175.1| - 0.083 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|336477034|ref|YP_004616175.1| - 0.083 12.2 2.0 0.51 9.6 0.0 2.4 2 1 1 3 3 3 0 KaiC Roc PF08477.13 gi|336477034|ref|YP_004616175.1| - 0.12 12.6 0.0 0.28 11.4 0.0 1.7 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ABC_ATPase PF09818.9 gi|336477034|ref|YP_004616175.1| - 0.12 11.1 1.2 1.2 7.9 0.5 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.6 gi|336477034|ref|YP_004616175.1| - 0.18 12.2 0.6 1.2 9.4 0.4 2.1 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|336477034|ref|YP_004616175.1| - 0.21 11.2 0.1 1 8.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|336477035|ref|YP_004616176.1| - 1.3e-22 80.8 0.0 1.9e-22 80.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|336477035|ref|YP_004616176.1| - 5.6e-12 46.0 0.3 1.1e-11 45.1 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|336477035|ref|YP_004616176.1| - 0.00023 20.7 0.0 0.00038 19.9 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|336477035|ref|YP_004616176.1| - 0.00064 20.0 0.0 0.0014 18.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|336477035|ref|YP_004616176.1| - 0.0043 16.4 0.0 0.032 13.6 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|336477035|ref|YP_004616176.1| - 0.021 15.2 0.0 0.058 13.8 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|336477035|ref|YP_004616176.1| - 0.025 14.5 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 gi|336477035|ref|YP_004616176.1| - 0.031 14.0 0.1 0.45 10.2 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF2075 PF09848.9 gi|336477035|ref|YP_004616176.1| - 0.039 13.2 0.0 0.053 12.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|336477035|ref|YP_004616176.1| - 0.05 13.1 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_29 PF13555.6 gi|336477035|ref|YP_004616176.1| - 0.057 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|336477035|ref|YP_004616176.1| - 0.079 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_21 PF13304.6 gi|336477035|ref|YP_004616176.1| - 0.088 12.6 4.2 0.17 11.7 0.3 2.1 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system RNA_helicase PF00910.22 gi|336477035|ref|YP_004616176.1| - 0.15 12.4 0.0 0.33 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.26 gi|336477035|ref|YP_004616176.1| - 0.16 11.7 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain Herpes_ori_bp PF02399.15 gi|336477035|ref|YP_004616176.1| - 0.16 10.0 0.0 0.21 9.6 0.0 1.1 1 0 0 1 1 1 0 Origin of replication binding protein AAA_5 PF07728.14 gi|336477035|ref|YP_004616176.1| - 0.18 11.8 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 gi|336477035|ref|YP_004616176.1| - 0.42 10.3 0.9 4.1 7.0 0.1 2.1 1 1 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|336477036|ref|YP_004616177.1| - 2e-26 92.9 12.8 2e-26 92.9 12.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|336477036|ref|YP_004616177.1| - 1.4e-05 24.9 0.2 1.4e-05 24.9 0.2 3.9 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF1072 PF06380.11 gi|336477036|ref|YP_004616177.1| - 4.2 7.3 6.5 7 6.6 2.8 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1072) BPD_transp_1 PF00528.22 gi|336477037|ref|YP_004616178.1| - 2e-46 158.1 8.8 2e-46 158.1 8.8 1.7 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Methyltransf_11 PF08241.12 gi|336477038|ref|YP_004616179.1| - 1.6e-24 86.3 0.0 2.6e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336477038|ref|YP_004616179.1| - 4.2e-23 81.9 0.0 7.9e-23 81.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336477038|ref|YP_004616179.1| - 6.6e-23 81.2 0.0 8.7e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336477038|ref|YP_004616179.1| - 7.3e-16 58.4 0.0 1.1e-15 57.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336477038|ref|YP_004616179.1| - 3.3e-15 56.1 0.0 4.3e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|336477038|ref|YP_004616179.1| - 3.8e-13 50.0 0.0 7.3e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|336477038|ref|YP_004616179.1| - 1.1e-07 31.6 0.0 1.8e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|336477038|ref|YP_004616179.1| - 2.3e-06 27.4 0.0 3.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.14 gi|336477038|ref|YP_004616179.1| - 2.9e-06 26.8 0.0 5.2e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 gi|336477038|ref|YP_004616179.1| - 2.6e-05 23.8 0.0 3.6e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|336477038|ref|YP_004616179.1| - 6.1e-05 23.1 0.0 0.00013 22.0 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|336477038|ref|YP_004616179.1| - 0.00097 19.1 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|336477038|ref|YP_004616179.1| - 0.0011 18.4 0.0 0.0018 17.6 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G DREV PF05219.12 gi|336477038|ref|YP_004616179.1| - 0.0011 18.2 0.0 0.0016 17.6 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase RrnaAD PF00398.20 gi|336477038|ref|YP_004616179.1| - 0.0012 18.0 0.0 0.0019 17.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TPMT PF05724.11 gi|336477038|ref|YP_004616179.1| - 0.0027 17.4 0.0 0.0039 16.9 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PCMT PF01135.19 gi|336477038|ref|YP_004616179.1| - 0.0091 15.8 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|336477038|ref|YP_004616179.1| - 0.011 15.2 0.0 0.049 13.1 0.0 1.9 2 0 0 2 2 2 0 Putative methyltransferase NodS PF05401.11 gi|336477038|ref|YP_004616179.1| - 0.013 15.1 0.0 0.018 14.7 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) UDPG_MGDP_dh_N PF03721.14 gi|336477038|ref|YP_004616179.1| - 0.041 13.4 0.0 0.068 12.7 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UPF0146 PF03686.13 gi|336477038|ref|YP_004616179.1| - 0.057 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) AdoMet_MTase PF07757.13 gi|336477038|ref|YP_004616179.1| - 0.063 13.6 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase 3HCDH_N PF02737.18 gi|336477038|ref|YP_004616179.1| - 0.086 12.7 0.0 0.33 10.8 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SBP_bac_5 PF00496.22 gi|336477039|ref|YP_004616180.1| - 3e-84 283.2 0.0 3.7e-84 282.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MgtE PF01769.16 gi|336477040|ref|YP_004616181.1| - 3e-20 72.9 12.4 3e-20 72.9 12.4 1.5 2 0 0 2 2 2 1 Divalent cation transporter DUF1129 PF06570.11 gi|336477040|ref|YP_004616181.1| - 5.3 6.5 6.9 8.8 5.8 6.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) DUF4118 PF13493.6 gi|336477040|ref|YP_004616181.1| - 9.2 6.1 22.1 0.28 11.0 14.7 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4118) MgtE PF01769.16 gi|336477041|ref|YP_004616182.1| - 8.6e-17 61.7 8.7 8.6e-17 61.7 8.7 1.6 2 0 0 2 2 2 1 Divalent cation transporter TrkA_C PF02080.21 gi|336477042|ref|YP_004616183.1| - 4.1e-28 97.0 0.0 1.8e-13 50.1 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|336477042|ref|YP_004616183.1| - 3.6e-16 59.4 15.6 7e-09 36.0 10.0 2.6 2 0 0 2 2 2 2 PhoU domain Rib_5-P_isom_A PF06026.14 gi|336477043|ref|YP_004616184.1| - 2.6e-62 209.5 0.1 3.7e-62 209.0 0.1 1.2 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|336477043|ref|YP_004616184.1| - 1e-08 35.2 1.1 2.6e-06 27.4 0.1 2.3 1 1 1 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|336477043|ref|YP_004616184.1| - 0.028 13.5 0.0 0.041 13.0 0.0 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain CoA_trans PF01144.23 gi|336477043|ref|YP_004616184.1| - 0.042 13.2 0.2 0.12 11.8 0.1 1.7 1 1 0 1 1 1 0 Coenzyme A transferase tRNA-synt_2 PF00152.20 gi|336477044|ref|YP_004616185.1| - 4.1e-92 308.6 0.1 5.1e-92 308.3 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|336477044|ref|YP_004616185.1| - 5.3e-14 52.0 0.5 9.3e-14 51.2 0.5 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|336477044|ref|YP_004616185.1| - 0.00037 20.0 0.8 0.022 14.2 0.1 2.8 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) Med30 PF11315.8 gi|336477044|ref|YP_004616185.1| - 0.083 13.1 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Mediator complex subunit 30 Asparaginase PF00710.20 gi|336477045|ref|YP_004616186.1| - 6.2e-59 198.8 0.0 1.2e-58 197.9 0.0 1.4 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|336477045|ref|YP_004616186.1| - 1.1e-32 112.7 0.1 5.5e-31 107.1 0.0 2.3 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|336477045|ref|YP_004616186.1| - 1e-17 63.2 2.8 1.5e-17 62.6 1.8 1.9 2 0 0 2 2 2 1 GatD N-terminal domain Lyase_1 PF00206.20 gi|336477046|ref|YP_004616187.1| - 1.4e-64 218.4 0.0 2.3e-64 217.8 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|336477046|ref|YP_004616187.1| - 3.2e-15 56.6 0.1 1.1e-14 54.9 0.1 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Rubrerythrin PF02915.17 gi|336477047|ref|YP_004616188.1| - 4.4e-07 30.4 6.8 2.9e-06 27.7 6.6 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|336477047|ref|YP_004616188.1| - 0.0063 16.7 1.1 0.061 13.5 0.4 2.1 1 1 1 2 2 2 1 Ferritin-like domain Desulfoferrod_N PF06397.12 gi|336477047|ref|YP_004616188.1| - 0.012 15.2 0.4 0.068 12.8 0.0 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DZR PF12773.7 gi|336477047|ref|YP_004616188.1| - 0.077 13.0 0.4 0.17 11.9 0.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|336477047|ref|YP_004616188.1| - 0.083 12.9 0.7 0.19 11.8 0.1 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|336477047|ref|YP_004616188.1| - 0.5 9.9 3.1 1.3 8.6 1.9 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding Aminotran_1_2 PF00155.21 gi|336477048|ref|YP_004616189.1| - 1.7e-63 215.0 0.0 2e-63 214.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|336477048|ref|YP_004616189.1| - 0.15 10.5 0.0 0.22 10.0 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Chorismate_synt PF01264.21 gi|336477049|ref|YP_004616190.1| - 9.4e-147 488.0 1.3 1.1e-146 487.8 1.3 1.0 1 0 0 1 1 1 1 Chorismate synthase CbiA PF01656.23 gi|336477050|ref|YP_004616191.1| - 2.3e-17 63.3 0.0 3e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|336477050|ref|YP_004616191.1| - 5.2e-09 36.3 0.0 2.8e-08 33.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|336477050|ref|YP_004616191.1| - 1.6e-07 31.0 0.1 0.003 17.1 0.0 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|336477050|ref|YP_004616191.1| - 4.2e-06 26.2 0.1 1.5e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|336477050|ref|YP_004616191.1| - 0.0001 21.9 0.0 0.015 14.8 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ AAA_18 PF13238.6 gi|336477050|ref|YP_004616191.1| - 0.0015 19.1 0.0 0.0023 18.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|336477050|ref|YP_004616191.1| - 0.0023 17.7 0.0 0.012 15.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.6 gi|336477050|ref|YP_004616191.1| - 0.0024 17.7 0.5 0.0046 16.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.18 gi|336477050|ref|YP_004616191.1| - 0.0028 17.2 0.2 0.15 11.5 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PRK PF00485.18 gi|336477050|ref|YP_004616191.1| - 0.004 16.9 0.1 0.0067 16.2 0.1 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|336477050|ref|YP_004616191.1| - 0.031 13.4 0.2 0.072 12.3 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain NTPase_1 PF03266.15 gi|336477050|ref|YP_004616191.1| - 0.049 13.5 0.1 0.085 12.8 0.1 1.4 1 0 0 1 1 1 0 NTPase NACHT PF05729.12 gi|336477050|ref|YP_004616191.1| - 0.057 13.3 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|336477050|ref|YP_004616191.1| - 0.062 13.7 0.0 0.12 12.8 0.0 1.5 2 0 0 2 2 1 0 AAA ATPase domain SRP54 PF00448.22 gi|336477050|ref|YP_004616191.1| - 0.094 12.3 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|336477050|ref|YP_004616191.1| - 0.12 12.9 0.1 0.17 12.4 0.1 1.7 1 1 0 1 1 1 0 ABC transporter TctA PF01970.16 gi|336477051|ref|YP_004616192.1| - 3.4e-72 243.4 35.0 4e-72 243.2 35.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family ATP_bind_3 PF01171.20 gi|336477052|ref|YP_004616193.1| - 3.2e-15 56.3 0.0 5.4e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|336477052|ref|YP_004616193.1| - 1.5e-08 33.9 0.0 2.2e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Diphthami_syn_2 PF01902.17 gi|336477052|ref|YP_004616193.1| - 2.6e-05 23.8 0.1 4.2e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Diphthamide synthase Asn_synthase PF00733.21 gi|336477052|ref|YP_004616193.1| - 8e-05 22.5 0.1 0.00013 21.8 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|336477052|ref|YP_004616193.1| - 0.00036 20.6 0.0 0.0006 19.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|336477052|ref|YP_004616193.1| - 0.00049 19.3 0.1 0.00068 18.8 0.1 1.2 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|336477052|ref|YP_004616193.1| - 0.0038 16.8 0.1 0.0038 16.8 0.1 2.9 3 2 1 4 4 4 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|336477052|ref|YP_004616193.1| - 0.028 13.7 0.0 0.038 13.3 0.0 1.3 1 1 0 1 1 1 0 Arginosuccinate synthase Stomoxyn PF11585.8 gi|336477052|ref|YP_004616193.1| - 0.094 12.7 0.3 0.23 11.5 0.3 1.6 1 0 0 1 1 1 0 Insect antimicrobial peptide, stomoxyn Germane PF10646.9 gi|336477052|ref|YP_004616193.1| - 0.13 13.0 0.0 0.42 11.4 0.0 1.8 2 0 0 2 2 2 0 Sporulation and spore germination Rhodanese_C PF12368.8 gi|336477052|ref|YP_004616193.1| - 0.2 12.1 6.6 0.61 10.5 0.8 3.0 3 0 0 3 3 3 0 Rhodanase C-terminal S_4TM PF18159.1 gi|336477053|ref|YP_004616194.1| - 0.015 14.6 1.4 0.015 14.6 1.4 3.3 3 2 0 3 3 3 0 SMODS-associating 4TM effector domain H_PPase PF03030.16 gi|336477054|ref|YP_004616195.1| - 4.7e-269 894.5 54.0 5.3e-269 894.3 54.0 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase PhoLip_ATPase_C PF16212.5 gi|336477054|ref|YP_004616195.1| - 0.31 10.7 11.3 0.1 12.3 6.3 2.2 2 0 0 2 2 2 0 Phospholipid-translocating P-type ATPase C-terminal Pterin_bind PF00809.22 gi|336477056|ref|YP_004616197.1| - 1.6e-09 37.8 0.4 3.3e-09 36.8 0.4 1.6 1 1 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.6 gi|336477056|ref|YP_004616197.1| - 2e-08 34.2 0.0 6.1e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) CdhD PF03599.16 gi|336477056|ref|YP_004616197.1| - 6.8e-06 25.0 0.1 1.3e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF681 PF05080.12 gi|336477056|ref|YP_004616197.1| - 0.034 14.8 0.0 0.2 12.3 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF681) Pertus-S4-tox PF09275.10 gi|336477056|ref|YP_004616197.1| - 0.036 14.3 0.0 2.2 8.6 0.0 2.6 2 0 0 2 2 2 0 Pertussis toxin S4 subunit Tubulin PF00091.25 gi|336477057|ref|YP_004616198.1| - 2.4e-38 132.3 0.2 5e-38 131.3 0.2 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|336477057|ref|YP_004616198.1| - 1.3e-34 118.4 1.2 3.4e-34 117.0 0.1 2.3 3 0 0 3 3 3 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|336477057|ref|YP_004616198.1| - 0.066 13.1 0.2 0.32 10.9 0.1 2.0 2 0 0 2 2 2 0 NAD(P)H-binding Tubulin_2 PF13809.6 gi|336477057|ref|YP_004616198.1| - 3.2 6.9 7.3 5.3 6.1 2.6 2.5 1 1 1 2 2 2 0 Tubulin like HAD_2 PF13419.6 gi|336477058|ref|YP_004616199.1| - 2.3e-32 112.5 0.1 3e-32 112.1 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336477058|ref|YP_004616199.1| - 1.1e-16 61.8 0.0 4.2e-16 59.9 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|336477058|ref|YP_004616199.1| - 9.2e-05 22.3 0.0 0.00064 19.5 0.0 2.1 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_like PF13242.6 gi|336477058|ref|YP_004616199.1| - 0.013 15.5 0.0 0.023 14.8 0.0 1.3 1 0 0 1 1 1 0 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|336477058|ref|YP_004616199.1| - 0.022 14.9 0.2 3.3 7.9 0.1 3.2 2 2 0 2 2 2 0 Haloacid dehalogenase-like hydrolase KH_7 PF17214.3 gi|336477059|ref|YP_004616200.1| - 3.1e-30 103.9 3.1 4.7e-29 100.1 0.2 3.0 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|336477059|ref|YP_004616200.1| - 2e-25 89.2 0.0 7.6e-25 87.3 0.0 2.1 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|336477059|ref|YP_004616200.1| - 5e-16 58.4 0.0 1.4e-15 57.0 0.0 1.8 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|336477059|ref|YP_004616200.1| - 2.1e-13 50.2 0.0 3.5e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336477059|ref|YP_004616200.1| - 6.4e-13 49.1 0.2 4.8e-12 46.3 0.3 2.3 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336477059|ref|YP_004616200.1| - 6e-11 42.2 0.1 1.2e-10 41.3 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|336477059|ref|YP_004616200.1| - 0.0003 20.7 0.0 0.00082 19.3 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|336477059|ref|YP_004616200.1| - 0.00042 20.1 0.8 0.00042 20.1 0.8 3.4 2 1 1 3 3 3 1 KH domain KH_1 PF00013.29 gi|336477059|ref|YP_004616200.1| - 0.0019 18.0 0.5 0.034 14.0 0.3 2.9 3 1 0 3 3 3 1 KH domain KH_4 PF13083.6 gi|336477059|ref|YP_004616200.1| - 0.0023 17.8 0.1 0.0061 16.4 0.1 1.7 1 0 0 1 1 1 1 KH domain Proteasome PF00227.26 gi|336477060|ref|YP_004616201.1| - 3.5e-56 189.7 1.0 4e-56 189.5 1.0 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF4191 PF13829.6 gi|336477060|ref|YP_004616201.1| - 0.076 12.3 0.2 0.11 11.8 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) HD PF01966.22 gi|336477061|ref|YP_004616202.1| - 5.2e-14 52.5 0.4 1e-13 51.6 0.1 1.6 2 0 0 2 2 2 1 HD domain HD_2 PF12917.7 gi|336477061|ref|YP_004616202.1| - 0.003 17.4 0.4 0.01 15.6 0.1 1.9 2 0 0 2 2 2 1 HD containing hydrolase-like enzyme HTH_38 PF13936.6 gi|336477061|ref|YP_004616202.1| - 0.008 15.9 0.5 0.82 9.5 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|336477062|ref|YP_004616203.1| - 2.5e-18 65.9 0.6 2.5e-18 65.9 0.6 1.4 2 0 0 2 2 2 1 TFIIE alpha subunit ATP-grasp_3 PF02655.14 gi|336477063|ref|YP_004616204.1| - 1.6e-34 119.3 0.0 2.3e-34 118.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|336477063|ref|YP_004616204.1| - 1.8e-07 30.9 0.0 7.3e-07 28.9 0.0 1.8 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.6 gi|336477063|ref|YP_004616204.1| - 1.7e-05 24.6 0.0 0.00012 21.8 0.0 2.3 2 1 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 gi|336477063|ref|YP_004616204.1| - 0.0054 16.0 0.0 0.016 14.4 0.0 1.8 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.13 gi|336477063|ref|YP_004616204.1| - 0.0094 15.5 0.0 0.058 12.9 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus Crystall PF00030.19 gi|336477063|ref|YP_004616204.1| - 0.071 13.3 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 Beta/Gamma crystallin NMD3 PF04981.13 gi|336477064|ref|YP_004616205.1| - 1.4e-54 185.1 0.7 1.8e-54 184.8 0.7 1.1 1 0 0 1 1 1 1 NMD3 family zf-TFIIB PF13453.6 gi|336477064|ref|YP_004616205.1| - 0.36 10.2 6.6 2.1 7.8 6.6 2.2 1 1 0 1 1 1 0 Transcription factor zinc-finger DZR PF12773.7 gi|336477064|ref|YP_004616205.1| - 0.68 10.0 5.9 0.43 10.6 2.5 2.4 2 1 0 2 2 2 0 Double zinc ribbon zf_UBZ PF18439.1 gi|336477064|ref|YP_004616205.1| - 1.2 8.8 5.6 2.3 7.9 0.1 2.9 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger NinF PF05810.12 gi|336477064|ref|YP_004616205.1| - 2 8.3 4.6 0.8 9.6 1.2 2.0 1 1 1 2 2 2 0 NinF protein zinc_ribbon_2 PF13240.6 gi|336477064|ref|YP_004616205.1| - 2.9 7.7 9.3 3 7.7 3.0 2.7 2 0 0 2 2 2 0 zinc-ribbon domain DUF362 PF04015.12 gi|336477065|ref|YP_004616206.1| - 1.3e-38 133.3 0.1 1.6e-38 133.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_6 PF12837.7 gi|336477065|ref|YP_004616206.1| - 0.00073 19.5 2.0 0.00073 19.5 2.0 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.27 gi|336477065|ref|YP_004616206.1| - 0.00075 19.2 2.3 0.00075 19.2 2.3 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336477065|ref|YP_004616206.1| - 0.0063 17.1 0.5 0.0063 17.1 0.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336477065|ref|YP_004616206.1| - 0.013 15.6 1.7 0.013 15.6 1.7 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336477065|ref|YP_004616206.1| - 0.36 11.0 13.7 1.8 8.8 14.2 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336477065|ref|YP_004616206.1| - 0.85 10.6 16.9 5.3 8.1 2.2 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain CdhD PF03599.16 gi|336477066|ref|YP_004616207.1| - 2e-150 500.8 0.2 2.4e-150 500.6 0.2 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|336477066|ref|YP_004616207.1| - 3e-13 49.1 1.4 5e-13 48.5 1.4 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster Pterin_bind PF00809.22 gi|336477066|ref|YP_004616207.1| - 0.19 11.3 0.0 1 9.0 0.0 2.0 1 1 0 1 1 1 0 Pterin binding enzyme CobT PF06213.12 gi|336477066|ref|YP_004616207.1| - 0.21 11.0 0.0 0.31 10.4 0.0 1.2 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT CdhD PF03599.16 gi|336477067|ref|YP_004616208.1| - 1.4e-87 294.0 2.2 6.7e-81 271.9 0.1 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit B12-binding PF02310.19 gi|336477067|ref|YP_004616208.1| - 0.0067 16.5 0.1 0.014 15.4 0.1 1.5 1 0 0 1 1 1 1 B12 binding domain GDPD PF03009.17 gi|336477067|ref|YP_004616208.1| - 0.036 13.8 0.0 0.054 13.2 0.0 1.2 1 0 0 1 1 1 0 Glycerophosphoryl diester phosphodiesterase family Sulfotransfer_3 PF13469.6 gi|336477067|ref|YP_004616208.1| - 0.077 13.4 0.0 0.19 12.1 0.0 1.6 2 0 0 2 2 2 0 Sulfotransferase family His_biosynth PF00977.21 gi|336477067|ref|YP_004616208.1| - 0.12 11.8 0.1 0.2 11.1 0.1 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein CbiA PF01656.23 gi|336477068|ref|YP_004616209.1| - 9.1e-18 64.5 0.1 1.1e-17 64.3 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|336477068|ref|YP_004616209.1| - 1.8e-16 60.6 0.0 3.3e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|336477068|ref|YP_004616209.1| - 6.2e-10 39.0 0.1 9.6e-10 38.3 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|336477068|ref|YP_004616209.1| - 6.1e-09 35.7 0.5 1.1e-07 31.5 0.5 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|336477068|ref|YP_004616209.1| - 2.7e-08 33.3 0.1 9.5e-08 31.6 0.1 2.0 1 1 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|336477068|ref|YP_004616209.1| - 6.1e-07 29.1 0.0 1.4e-05 24.7 0.0 2.3 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ NTPase_1 PF03266.15 gi|336477068|ref|YP_004616209.1| - 0.00013 22.0 0.3 0.29 11.0 0.1 2.2 2 0 0 2 2 2 2 NTPase Toprim PF01751.22 gi|336477068|ref|YP_004616209.1| - 0.00036 20.7 0.1 0.0028 17.8 0.0 2.2 2 0 0 2 2 2 1 Toprim domain Toprim_4 PF13662.6 gi|336477068|ref|YP_004616209.1| - 0.0021 18.5 0.2 0.018 15.5 0.0 2.3 2 0 0 2 2 2 1 Toprim domain SRP54 PF00448.22 gi|336477068|ref|YP_004616209.1| - 0.0025 17.5 1.8 1.3 8.6 0.5 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|336477068|ref|YP_004616209.1| - 0.0092 16.4 0.0 0.012 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|336477068|ref|YP_004616209.1| - 0.012 15.4 0.2 0.026 14.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|336477068|ref|YP_004616209.1| - 0.015 14.5 0.1 0.023 13.9 0.1 1.3 1 0 0 1 1 1 0 PIF1-like helicase MipZ PF09140.11 gi|336477068|ref|YP_004616209.1| - 0.018 14.3 0.5 5.6 6.2 0.1 2.4 2 0 0 2 2 2 0 ATPase MipZ AAA_25 PF13481.6 gi|336477068|ref|YP_004616209.1| - 0.019 14.6 0.1 0.21 11.2 0.0 2.5 2 1 1 3 3 3 0 AAA domain Ras PF00071.22 gi|336477068|ref|YP_004616209.1| - 0.022 14.3 0.4 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 Ras family AAA_26 PF13500.6 gi|336477068|ref|YP_004616209.1| - 0.036 13.9 1.8 3.8 7.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|336477068|ref|YP_004616209.1| - 0.039 13.8 0.3 0.093 12.5 0.1 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ABC_tran PF00005.27 gi|336477068|ref|YP_004616209.1| - 0.044 14.3 0.0 0.094 13.2 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_14 PF13173.6 gi|336477068|ref|YP_004616209.1| - 0.048 13.7 0.0 0.73 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|336477068|ref|YP_004616209.1| - 0.079 12.2 0.1 0.18 11.1 0.1 1.5 2 0 0 2 2 2 0 Zeta toxin APS_kinase PF01583.20 gi|336477068|ref|YP_004616209.1| - 0.081 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Spore_YhcN_YlaJ PF09580.10 gi|336477068|ref|YP_004616209.1| - 0.096 12.8 1.4 1.2 9.2 0.6 2.1 2 0 0 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Toprim_2 PF13155.6 gi|336477068|ref|YP_004616209.1| - 0.097 13.1 0.2 9.3 6.8 0.0 2.3 2 0 0 2 2 2 0 Toprim-like T2SSE PF00437.20 gi|336477068|ref|YP_004616209.1| - 0.12 11.4 0.4 0.21 10.6 0.4 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.14 gi|336477068|ref|YP_004616209.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.9 gi|336477068|ref|YP_004616209.1| - 0.13 11.4 0.1 0.21 10.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|336477068|ref|YP_004616209.1| - 0.16 12.3 0.0 0.48 10.7 0.0 1.8 2 1 1 3 3 2 0 AAA domain DUF463 PF04317.12 gi|336477068|ref|YP_004616209.1| - 0.22 10.4 0.1 0.37 9.6 0.1 1.3 1 0 0 1 1 1 0 YcjX-like family, DUF463 AAA_19 PF13245.6 gi|336477068|ref|YP_004616209.1| - 0.24 11.8 1.5 0.34 11.2 0.4 1.8 2 0 0 2 2 2 0 AAA domain CdhC PF03598.15 gi|336477069|ref|YP_004616210.1| - 6e-61 204.9 0.0 8.7e-61 204.3 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit SMP PF04927.12 gi|336477069|ref|YP_004616210.1| - 0.1 13.1 0.2 0.24 11.9 0.2 1.6 1 0 0 1 1 1 0 Seed maturation protein CO_dh PF02552.16 gi|336477070|ref|YP_004616211.1| - 1.5e-32 112.6 0.0 1.8e-32 112.4 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|336477070|ref|YP_004616211.1| - 0.00016 21.4 0.0 0.00026 20.8 0.0 1.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.20 gi|336477071|ref|YP_004616212.1| - 1.9e-108 363.4 0.8 1.6e-105 353.8 0.8 2.1 1 1 0 1 1 1 1 Prismane/CO dehydrogenase family Fer4_7 PF12838.7 gi|336477071|ref|YP_004616212.1| - 2.1e-09 37.8 7.0 2.1e-09 37.8 7.0 2.3 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336477071|ref|YP_004616212.1| - 4.3e-08 33.2 7.5 4.3e-08 33.2 7.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336477071|ref|YP_004616212.1| - 6.6e-08 32.9 6.1 6.6e-08 32.9 6.1 2.2 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336477071|ref|YP_004616212.1| - 2.8e-07 31.0 15.8 0.00049 20.6 0.4 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336477071|ref|YP_004616212.1| - 1.4e-06 27.9 25.7 2.7e-05 23.8 3.8 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336477071|ref|YP_004616212.1| - 2.2e-06 27.7 19.3 3.5e-05 23.8 11.2 3.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336477071|ref|YP_004616212.1| - 3e-05 24.1 10.6 3e-05 24.1 10.6 2.8 2 1 1 3 3 2 2 4Fe-4S dicluster domain CODH_A_N PF18537.1 gi|336477071|ref|YP_004616212.1| - 6.3e-05 22.9 0.0 0.00016 21.6 0.0 1.7 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit alpha N-terminal domain Fer4_4 PF12800.7 gi|336477071|ref|YP_004616212.1| - 0.00039 20.7 12.4 0.004 17.5 1.7 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336477071|ref|YP_004616212.1| - 0.001 19.0 3.7 0.001 19.0 3.7 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|336477071|ref|YP_004616212.1| - 0.0048 16.9 25.0 0.015 15.4 1.7 3.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336477071|ref|YP_004616212.1| - 0.023 14.9 7.9 0.32 11.2 0.6 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336477071|ref|YP_004616212.1| - 0.03 15.3 4.1 0.03 15.3 4.1 3.6 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336477071|ref|YP_004616212.1| - 0.033 15.1 18.1 0.36 11.8 2.5 3.4 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|336477071|ref|YP_004616212.1| - 0.32 11.6 10.5 1.4 9.5 1.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|336477071|ref|YP_004616212.1| - 0.51 11.1 4.0 2 9.2 0.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Rhomboid PF01694.22 gi|336477072|ref|YP_004616213.1| - 2.7e-36 124.8 15.4 2.7e-36 124.8 15.4 1.9 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|336477072|ref|YP_004616213.1| - 2.8e-13 49.8 6.4 4e-13 49.3 6.4 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|336477072|ref|YP_004616213.1| - 3.8e-06 27.4 0.5 3.8e-06 27.4 0.5 2.0 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) zf-HIT PF04438.16 gi|336477072|ref|YP_004616213.1| - 0.025 14.4 6.5 0.044 13.7 6.5 1.3 1 0 0 1 1 1 0 HIT zinc finger FYVE PF01363.21 gi|336477072|ref|YP_004616213.1| - 0.032 14.4 1.1 0.049 13.8 1.1 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-C2H2_4 PF13894.6 gi|336477072|ref|YP_004616213.1| - 0.11 13.4 2.4 0.26 12.3 2.4 1.7 1 0 0 1 1 1 0 C2H2-type zinc finger zf-ribbon_3 PF13248.6 gi|336477072|ref|YP_004616213.1| - 0.44 10.0 3.6 1 8.9 3.6 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Transp_Tc5_C PF04236.15 gi|336477072|ref|YP_004616213.1| - 0.8 10.1 5.0 1.3 9.4 5.0 1.4 1 0 0 1 1 1 0 Tc5 transposase C-terminal domain DUF1129 PF06570.11 gi|336477072|ref|YP_004616213.1| - 4.6 6.7 9.9 1.1 8.8 4.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) zf-H2C2_2 PF13465.6 gi|336477072|ref|YP_004616213.1| - 9.8 6.8 7.7 4.7 7.8 3.0 2.3 1 1 1 2 2 2 0 Zinc-finger double domain NYN PF01936.18 gi|336477074|ref|YP_004616215.1| - 6.5e-25 88.3 0.0 9e-25 87.9 0.0 1.1 1 0 0 1 1 1 1 NYN domain Peptidase_C70 PF12385.8 gi|336477074|ref|YP_004616215.1| - 0.084 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Papain-like cysteine protease AvrRpt2 HMGL-like PF00682.19 gi|336477075|ref|YP_004616216.1| - 1.1e-78 264.5 3.7 1.4e-78 264.1 3.7 1.1 1 0 0 1 1 1 1 HMGL-like Ribosomal_S13 PF00416.22 gi|336477075|ref|YP_004616216.1| - 0.038 14.4 0.7 4 7.8 0.1 2.6 2 0 0 2 2 2 0 Ribosomal protein S13/S18 AIRC PF00731.20 gi|336477076|ref|YP_004616217.1| - 3e-17 62.6 5.2 3e-17 62.6 5.2 1.5 2 0 0 2 2 2 1 AIR carboxylase PALP PF00291.25 gi|336477076|ref|YP_004616217.1| - 0.048 13.1 2.5 0.066 12.6 2.5 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme DUF2719 PF10891.8 gi|336477076|ref|YP_004616217.1| - 0.19 11.7 0.0 1.6 8.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2719) NAD_kinase PF01513.21 gi|336477077|ref|YP_004616218.1| - 5.4e-54 183.4 0.2 6.4e-54 183.1 0.2 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|336477077|ref|YP_004616218.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Inositol_P PF00459.25 gi|336477078|ref|YP_004616219.1| - 2.8e-33 115.6 0.0 3.5e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|336477078|ref|YP_004616219.1| - 8.3e-06 25.4 0.0 1.7e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Gp_dh_C PF02800.20 gi|336477079|ref|YP_004616220.1| - 4.6e-27 94.6 0.0 6.7e-27 94.0 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|336477079|ref|YP_004616220.1| - 3.7e-11 43.2 0.5 8.6e-11 42.0 0.4 1.7 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|336477079|ref|YP_004616220.1| - 1.2e-06 28.7 0.8 8e-06 26.1 0.8 2.3 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|336477079|ref|YP_004616220.1| - 0.0043 16.4 0.2 0.023 14.1 0.2 2.1 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|336477079|ref|YP_004616220.1| - 0.0066 16.7 0.1 0.016 15.4 0.0 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|336477079|ref|YP_004616220.1| - 0.01 16.5 0.1 0.041 14.5 0.1 2.0 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|336477079|ref|YP_004616220.1| - 0.019 15.8 0.0 0.042 14.7 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|336477079|ref|YP_004616220.1| - 0.095 13.1 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain CooT PF10133.9 gi|336477080|ref|YP_004616221.1| - 2e-21 76.0 2.8 2.4e-21 75.8 2.8 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT DUF89 PF01937.19 gi|336477081|ref|YP_004616222.1| - 1.2e-56 192.2 0.1 1.6e-56 191.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Metalloenzyme PF01676.18 gi|336477082|ref|YP_004616223.1| - 1.2e-10 41.1 0.0 3.6e-10 39.6 0.0 1.7 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|336477082|ref|YP_004616223.1| - 5.8e-09 36.0 0.1 1e-07 31.9 0.1 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|336477082|ref|YP_004616223.1| - 8.5e-08 31.9 0.0 1.3e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Alk_phosphatase PF00245.20 gi|336477082|ref|YP_004616223.1| - 0.0032 16.5 0.0 0.0065 15.5 0.0 1.4 2 0 0 2 2 2 1 Alkaline phosphatase OppC_N PF12911.7 gi|336477082|ref|YP_004616223.1| - 0.49 10.4 2.9 1.5 8.9 2.9 1.8 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DS PF01916.17 gi|336477083|ref|YP_004616224.1| - 1.9e-42 145.5 0.0 2.6e-42 145.1 0.0 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase CAP PF00188.26 gi|336477084|ref|YP_004616225.1| - 3.4e-15 57.0 0.2 6.7e-15 56.0 0.1 1.6 1 1 0 1 1 1 1 Cysteine-rich secretory protein family DUF2072 PF09845.9 gi|336477084|ref|YP_004616225.1| - 0.079 13.2 0.7 0.17 12.1 0.6 1.6 1 1 0 1 1 1 0 Zn-ribbon containing protein NDUF_B6 PF09782.9 gi|336477084|ref|YP_004616225.1| - 0.094 12.8 0.1 0.16 12.1 0.1 1.4 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit EF-hand_1 PF00036.32 gi|336477084|ref|YP_004616225.1| - 0.13 11.8 0.5 0.44 10.2 0.1 2.2 2 0 0 2 2 2 0 EF hand Phage_Coat_B PF05356.11 gi|336477085|ref|YP_004616226.1| - 0.019 14.9 0.2 0.019 14.9 0.2 1.1 1 0 0 1 1 1 0 Phage Coat protein B SIMPL PF04402.14 gi|336477086|ref|YP_004616227.1| - 7.9e-51 173.4 5.4 1e-50 173.0 5.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) YbaB_DNA_bd PF02575.16 gi|336477086|ref|YP_004616227.1| - 0.94 9.8 4.5 0.59 10.4 1.5 2.2 2 1 0 2 2 2 0 YbaB/EbfC DNA-binding family HisKA_2 PF07568.12 gi|336477087|ref|YP_004616228.1| - 2.5e-26 91.5 3.9 6.5e-26 90.2 3.9 1.8 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 gi|336477087|ref|YP_004616228.1| - 7.6e-08 32.8 0.1 3.3e-07 30.8 0.1 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|336477087|ref|YP_004616228.1| - 9e-08 32.3 0.2 3e-05 24.2 0.0 3.5 3 0 0 3 3 3 1 PAS domain HWE_HK PF07536.14 gi|336477087|ref|YP_004616228.1| - 4.6e-06 27.2 0.2 1e-05 26.1 0.2 1.6 1 0 0 1 1 1 1 HWE histidine kinase PAS_8 PF13188.7 gi|336477087|ref|YP_004616228.1| - 8.5e-05 22.5 0.0 0.00029 20.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|336477087|ref|YP_004616228.1| - 0.00019 21.4 0.0 0.00037 20.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|336477087|ref|YP_004616228.1| - 0.00029 21.1 0.0 0.0008 19.6 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|336477087|ref|YP_004616228.1| - 0.00094 19.2 0.0 0.02 14.9 0.0 2.7 2 1 1 3 3 3 1 PAS fold SPOB_a PF14689.6 gi|336477087|ref|YP_004616228.1| - 0.068 12.9 0.7 0.15 11.7 0.7 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain FANCF PF11107.8 gi|336477087|ref|YP_004616228.1| - 0.076 12.2 0.0 0.44 9.7 0.0 1.9 2 0 0 2 2 2 0 Fanconi anemia group F protein (FANCF) Lip_prot_lig_C PF10437.9 gi|336477087|ref|YP_004616228.1| - 0.11 12.4 4.3 0.17 11.9 0.3 3.2 4 0 0 4 4 4 0 Bacterial lipoate protein ligase C-terminus HisKA_2 PF07568.12 gi|336477088|ref|YP_004616229.1| - 3.3e-29 100.8 0.6 8.2e-29 99.5 0.6 1.7 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.12 gi|336477088|ref|YP_004616229.1| - 1.1e-16 60.9 0.2 2.9e-15 56.3 0.1 2.4 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|336477088|ref|YP_004616229.1| - 1.5e-08 35.1 0.4 6.3e-08 33.1 0.4 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|336477088|ref|YP_004616229.1| - 3.5e-07 30.4 0.4 0.029 14.6 0.0 2.9 2 0 0 2 2 2 2 PAS domain HWE_HK PF07536.14 gi|336477088|ref|YP_004616229.1| - 1.3e-06 29.0 0.1 2.3e-06 28.2 0.1 1.4 1 0 0 1 1 1 1 HWE histidine kinase PAS PF00989.25 gi|336477088|ref|YP_004616229.1| - 2.5e-05 24.2 0.1 0.0016 18.5 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|336477088|ref|YP_004616229.1| - 0.00013 22.2 0.0 1 9.7 0.0 2.9 2 1 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.6 gi|336477088|ref|YP_004616229.1| - 0.00028 20.8 0.0 0.00068 19.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.6 gi|336477088|ref|YP_004616229.1| - 0.0078 16.3 0.0 0.087 13.0 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.6 gi|336477088|ref|YP_004616229.1| - 0.017 14.9 0.0 0.04 13.8 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3713 PF12506.8 gi|336477088|ref|YP_004616229.1| - 0.077 13.3 2.7 0.084 13.2 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3713) PAS_8 PF13188.7 gi|336477088|ref|YP_004616229.1| - 0.1 12.6 0.0 1.4 9.1 0.0 2.4 2 0 0 2 2 2 0 PAS domain Met_10 PF02475.16 gi|336477089|ref|YP_004616230.1| - 4.1e-62 209.5 0.1 5.5e-62 209.1 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|336477089|ref|YP_004616230.1| - 8.3e-20 70.4 0.0 1.3e-18 66.6 0.1 2.3 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain MTS PF05175.14 gi|336477089|ref|YP_004616230.1| - 5.7e-10 39.0 0.0 9.9e-10 38.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|336477089|ref|YP_004616230.1| - 6.9e-08 33.1 0.0 1.3e-07 32.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|336477089|ref|YP_004616230.1| - 1.9e-07 30.8 0.0 3.8e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|336477089|ref|YP_004616230.1| - 5.7e-07 29.4 0.1 1.9e-06 27.7 0.1 1.9 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|336477089|ref|YP_004616230.1| - 6.6e-07 29.3 0.0 1.2e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|336477089|ref|YP_004616230.1| - 5e-05 22.6 0.0 6.7e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase RrnaAD PF00398.20 gi|336477089|ref|YP_004616230.1| - 0.00018 20.7 0.0 0.00027 20.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PRMT5 PF05185.16 gi|336477089|ref|YP_004616230.1| - 0.00026 20.9 0.0 0.00043 20.2 0.0 1.3 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase Methyltransf_4 PF02390.17 gi|336477089|ref|YP_004616230.1| - 0.00051 19.6 0.0 0.001 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase ADH_zinc_N PF00107.26 gi|336477089|ref|YP_004616230.1| - 0.00081 19.4 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_15 PF09445.10 gi|336477089|ref|YP_004616230.1| - 0.0013 18.3 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.6 gi|336477089|ref|YP_004616230.1| - 0.0029 18.6 0.0 0.0065 17.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TrkA_N PF02254.18 gi|336477089|ref|YP_004616230.1| - 0.0076 16.5 0.1 1.8 8.8 0.0 2.6 2 1 1 3 3 3 1 TrkA-N domain Methyltr_RsmB-F PF01189.17 gi|336477089|ref|YP_004616230.1| - 0.008 15.8 0.0 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F CooT PF10133.9 gi|336477089|ref|YP_004616230.1| - 0.0085 16.3 0.2 0.17 12.2 0.0 3.0 4 0 0 4 4 3 1 CO dehydrogenase accessory protein CooT Methyltransf_18 PF12847.7 gi|336477089|ref|YP_004616230.1| - 0.023 14.6 0.1 0.053 13.5 0.1 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336477089|ref|YP_004616230.1| - 0.025 15.3 0.0 0.048 14.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|336477089|ref|YP_004616230.1| - 0.042 14.0 0.0 0.084 13.0 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.19 gi|336477089|ref|YP_004616230.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 gi|336477089|ref|YP_004616230.1| - 0.14 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 DNA methylase DUF5063 PF16702.5 gi|336477089|ref|YP_004616230.1| - 0.15 12.5 0.0 0.24 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5063) LysE PF01810.18 gi|336477090|ref|YP_004616231.1| - 7.8e-26 90.7 16.3 9e-26 90.5 16.3 1.0 1 0 0 1 1 1 1 LysE type translocator Oxidored_q3 PF00499.20 gi|336477090|ref|YP_004616231.1| - 4.2 7.1 20.1 14 5.4 20.1 2.2 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TFIIB PF00382.19 gi|336477091|ref|YP_004616232.1| - 8.5e-44 147.5 1.4 2.2e-21 75.7 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|336477091|ref|YP_004616232.1| - 5.6e-18 64.2 1.3 5.6e-18 64.2 1.3 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|336477091|ref|YP_004616232.1| - 9e-05 21.9 0.3 0.048 13.2 0.1 3.0 2 0 0 2 2 2 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.11 gi|336477091|ref|YP_004616232.1| - 0.00079 19.3 0.4 0.0022 17.9 0.4 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RPA_interact_C PF14768.6 gi|336477091|ref|YP_004616232.1| - 0.0077 16.8 0.1 0.6 10.7 0.0 2.5 2 0 0 2 2 2 1 Replication protein A interacting C-terminal HTH_AsnC-type PF13404.6 gi|336477091|ref|YP_004616232.1| - 0.016 15.0 0.6 0.063 13.1 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Lar_restr_allev PF14354.6 gi|336477091|ref|YP_004616232.1| - 0.017 15.5 1.6 0.12 12.7 0.5 2.7 3 0 0 3 3 3 0 Restriction alleviation protein Lar Cyclin_C PF02984.19 gi|336477091|ref|YP_004616232.1| - 0.055 13.5 0.0 9.1 6.4 0.0 2.4 2 0 0 2 2 2 0 Cyclin, C-terminal domain DZR PF12773.7 gi|336477091|ref|YP_004616232.1| - 0.077 13.0 1.1 0.38 10.8 0.3 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|336477091|ref|YP_004616232.1| - 0.1 12.0 2.2 0.89 9.1 2.2 2.3 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|336477091|ref|YP_004616232.1| - 0.13 12.3 0.6 1.6 8.8 0.5 2.5 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|336477091|ref|YP_004616232.1| - 0.14 12.3 6.5 0.16 12.1 0.6 3.1 2 1 1 3 3 3 0 Zinc ribbon domain HTH_31 PF13560.6 gi|336477091|ref|YP_004616232.1| - 0.18 12.1 3.7 8.9 6.7 0.1 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain A2L_zn_ribbon PF08792.10 gi|336477091|ref|YP_004616232.1| - 0.27 11.0 1.6 2.9 7.7 1.6 2.3 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-Mss51 PF13824.6 gi|336477091|ref|YP_004616232.1| - 0.43 10.7 2.1 18 5.5 1.7 3.4 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.6 gi|336477091|ref|YP_004616232.1| - 1 9.3 5.3 0.44 10.5 1.0 2.7 2 0 0 2 2 2 0 Nudix N-terminal DUF35_N PF12172.8 gi|336477091|ref|YP_004616232.1| - 5.7 6.9 7.8 0.52 10.2 0.2 2.7 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Gar1 PF04410.14 gi|336477092|ref|YP_004616233.1| - 4.9e-14 52.4 0.2 5.3e-14 52.3 0.2 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region NIR_SIR_ferr PF03460.17 gi|336477092|ref|YP_004616233.1| - 0.11 12.3 0.1 0.22 11.4 0.1 1.6 1 1 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain PEP-utilizers_C PF02896.18 gi|336477093|ref|YP_004616234.1| - 1.9e-89 299.7 0.6 3.2e-89 298.9 0.0 1.7 2 0 0 2 2 2 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|336477093|ref|YP_004616234.1| - 5.8e-66 223.0 0.0 1.1e-49 169.6 0.0 3.3 1 1 1 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|336477093|ref|YP_004616234.1| - 2.7e-29 100.7 2.6 3.2e-29 100.5 1.3 1.9 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain Laminin_II PF06009.12 gi|336477093|ref|YP_004616234.1| - 0.0027 17.7 2.7 0.3 11.1 0.0 3.3 3 0 0 3 3 3 1 Laminin Domain II Phage_connect_1 PF05135.13 gi|336477093|ref|YP_004616234.1| - 0.0033 17.9 0.8 0.011 16.3 0.2 2.2 2 0 0 2 2 2 1 Phage gp6-like head-tail connector protein RNA_pol_Rpb1_4 PF05000.17 gi|336477093|ref|YP_004616234.1| - 0.042 13.8 0.9 0.11 12.5 0.0 2.1 3 0 0 3 3 3 0 RNA polymerase Rpb1, domain 4 H-kinase_dim PF02895.14 gi|336477093|ref|YP_004616234.1| - 0.057 13.8 0.0 2.1 8.8 0.0 3.3 3 0 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain PEP-utilisers_N PF05524.13 gi|336477093|ref|YP_004616234.1| - 0.15 12.2 0.3 1.7 8.8 0.1 2.8 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal Tektin PF03148.14 gi|336477093|ref|YP_004616234.1| - 0.64 8.7 4.0 0.19 10.5 0.2 1.9 2 0 0 2 2 2 0 Tektin family MapZ_EC1 PF18041.1 gi|336477093|ref|YP_004616234.1| - 8 6.7 6.7 0.5 10.6 0.3 2.2 3 0 0 3 3 3 0 MapZ extracellular domain 1 ACT PF01842.25 gi|336477094|ref|YP_004616235.1| - 1.7e-18 66.1 1.2 2.2e-10 40.1 0.2 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|336477094|ref|YP_004616235.1| - 1.3e-08 34.5 0.1 0.0005 19.8 0.1 2.5 2 1 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|336477094|ref|YP_004616235.1| - 2e-07 31.5 0.7 0.0048 17.5 0.1 2.3 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|336477094|ref|YP_004616235.1| - 0.02 14.9 0.0 3.2 7.8 0.0 2.4 1 1 0 2 2 2 0 ACT domain COX2 PF00116.20 gi|336477094|ref|YP_004616235.1| - 0.14 12.0 0.1 7.1 6.6 0.0 2.3 2 1 0 2 2 2 0 Cytochrome C oxidase subunit II, periplasmic domain AMP-binding_C_2 PF14535.6 gi|336477095|ref|YP_004616236.1| - 1.2e-31 108.9 0.4 2.9e-31 107.6 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|336477095|ref|YP_004616236.1| - 4.1e-15 55.3 0.1 9.3e-15 54.1 0.0 1.6 2 0 0 2 2 2 1 AMP-binding enzyme GH3 PF03321.13 gi|336477095|ref|YP_004616236.1| - 0.00077 18.4 0.0 0.039 12.8 0.0 2.2 2 0 0 2 2 2 2 GH3 auxin-responsive promoter LuxE PF04443.12 gi|336477095|ref|YP_004616236.1| - 0.0026 16.9 0.0 0.18 10.8 0.0 2.4 2 1 0 2 2 2 2 Acyl-protein synthetase, LuxE DHHA1 PF02272.19 gi|336477096|ref|YP_004616237.1| - 6.6e-13 49.3 1.4 1.2e-12 48.5 1.4 1.3 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|336477096|ref|YP_004616237.1| - 4.5e-11 42.9 0.3 9.8e-11 41.8 0.3 1.6 1 0 0 1 1 1 1 DHH family Prefoldin_2 PF01920.20 gi|336477097|ref|YP_004616238.1| - 4.4e-21 74.8 18.2 4.9e-21 74.7 18.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF1040 PF06288.13 gi|336477097|ref|YP_004616238.1| - 0.027 14.9 4.2 0.24 11.8 3.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1040) DHR10 PF18595.1 gi|336477097|ref|YP_004616238.1| - 0.028 14.5 4.9 0.028 14.5 4.9 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain FlaC_arch PF05377.11 gi|336477097|ref|YP_004616238.1| - 0.034 14.5 1.8 0.034 14.5 1.8 2.5 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF87 PF01935.17 gi|336477097|ref|YP_004616238.1| - 0.063 13.4 4.7 0.07 13.2 4.7 1.0 1 0 0 1 1 1 0 Helicase HerA, central domain Nup54 PF13874.6 gi|336477097|ref|YP_004616238.1| - 0.068 13.3 10.2 0.12 12.5 2.1 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 DUF1690 PF07956.11 gi|336477097|ref|YP_004616238.1| - 0.31 11.5 14.8 0.88 10.0 14.8 1.7 1 1 0 1 1 1 0 Protein of Unknown function (DUF1690) DUF3450 PF11932.8 gi|336477097|ref|YP_004616238.1| - 0.33 10.2 17.3 1.1 8.5 4.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) NBD_C PF17042.5 gi|336477097|ref|YP_004616238.1| - 0.64 10.5 6.2 1.1 9.7 6.2 1.4 1 1 0 1 1 1 0 Nucleotide-binding C-terminal domain V_ATPase_I PF01496.19 gi|336477097|ref|YP_004616238.1| - 0.88 7.4 7.9 1.1 7.1 7.9 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4795 PF16043.5 gi|336477097|ref|YP_004616238.1| - 0.94 9.0 14.1 0.12 11.9 3.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) TSNAXIP1_N PF15739.5 gi|336477097|ref|YP_004616238.1| - 1.1 9.7 13.2 1.6 9.2 2.0 2.1 2 0 0 2 2 2 0 Translin-associated factor X-interacting N-terminus FapA PF03961.13 gi|336477097|ref|YP_004616238.1| - 1.2 7.6 11.4 1.5 7.4 11.4 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF948 PF06103.11 gi|336477097|ref|YP_004616238.1| - 1.3 9.3 6.0 5.4 7.3 0.2 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) YlqD PF11068.8 gi|336477097|ref|YP_004616238.1| - 1.4 9.3 19.1 0.66 10.3 4.4 2.1 2 0 0 2 2 2 0 YlqD protein Atg14 PF10186.9 gi|336477097|ref|YP_004616238.1| - 1.4 7.9 13.6 2.5 7.1 13.6 1.4 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 FlxA PF14282.6 gi|336477097|ref|YP_004616238.1| - 2.3 8.2 26.0 3.2 7.8 10.1 2.5 2 0 0 2 2 2 0 FlxA-like protein Jnk-SapK_ap_N PF09744.9 gi|336477097|ref|YP_004616238.1| - 2.4 8.4 18.5 9.7 6.4 18.5 1.7 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 LMBR1 PF04791.16 gi|336477097|ref|YP_004616238.1| - 4.4 6.1 8.6 5.2 5.8 8.6 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein YtxH PF12732.7 gi|336477097|ref|YP_004616238.1| - 7 7.3 7.5 7 7.3 2.1 2.2 2 0 0 2 2 2 0 YtxH-like protein DivIC PF04977.15 gi|336477097|ref|YP_004616238.1| - 7.2 6.5 18.7 5.5 6.8 6.4 2.8 1 1 1 2 2 2 0 Septum formation initiator Pcc1 PF09341.10 gi|336477098|ref|YP_004616239.1| - 4.7e-08 33.0 0.0 5.8e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.13 gi|336477100|ref|YP_004616241.1| - 3.1e-08 33.1 8.5 4.6e-08 32.6 8.5 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|336477100|ref|YP_004616241.1| - 0.00021 20.8 1.4 0.25 11.0 0.0 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|336477100|ref|YP_004616241.1| - 0.0016 17.9 1.1 0.0019 17.7 1.1 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|336477100|ref|YP_004616241.1| - 0.0016 17.7 0.6 0.0079 15.6 0.1 1.9 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|336477100|ref|YP_004616241.1| - 0.0021 18.0 2.1 0.0036 17.2 2.1 1.5 1 1 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|336477100|ref|YP_004616241.1| - 0.0032 17.5 0.3 0.0032 17.5 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|336477100|ref|YP_004616241.1| - 0.0039 16.8 2.1 0.0075 16.0 2.1 1.5 1 1 0 1 1 1 1 zinc-ribbon domain DUF951 PF06107.11 gi|336477100|ref|YP_004616241.1| - 0.006 16.5 2.4 0.11 12.4 0.1 2.0 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF951) Anti-TRAP PF15777.5 gi|336477100|ref|YP_004616241.1| - 0.0077 16.2 0.1 0.0078 16.1 0.1 1.1 1 0 0 1 1 1 1 Tryptophan RNA-binding attenuator protein inhibitory protein zinc_ribbon_9 PF14369.6 gi|336477100|ref|YP_004616241.1| - 0.0093 16.2 0.9 0.013 15.8 0.9 1.2 1 0 0 1 1 1 1 zinc-ribbon Cys_rich_CPXG PF14255.6 gi|336477100|ref|YP_004616241.1| - 0.012 15.5 1.6 0.048 13.6 0.2 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG DZR PF12773.7 gi|336477100|ref|YP_004616241.1| - 0.026 14.5 0.9 0.12 12.4 1.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|336477100|ref|YP_004616241.1| - 0.038 14.1 4.3 0.077 13.1 4.3 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|336477100|ref|YP_004616241.1| - 0.044 13.8 5.1 0.14 12.2 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF2072 PF09845.9 gi|336477100|ref|YP_004616241.1| - 0.049 13.9 0.3 0.049 13.9 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein TFIIS_C PF01096.18 gi|336477100|ref|YP_004616241.1| - 0.07 13.0 2.2 4.2 7.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_6 PF14599.6 gi|336477100|ref|YP_004616241.1| - 0.083 12.9 1.0 0.11 12.5 1.0 1.3 1 0 0 1 1 1 0 Zinc-ribbon C1_1 PF00130.22 gi|336477100|ref|YP_004616241.1| - 0.098 12.6 1.6 3.2 7.7 0.2 1.8 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) CpXC PF14353.6 gi|336477100|ref|YP_004616241.1| - 0.11 12.5 1.2 0.37 10.9 0.3 1.9 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_4 PF13717.6 gi|336477100|ref|YP_004616241.1| - 0.19 11.7 4.4 4.5 7.3 4.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DiS_P_DiS PF06750.13 gi|336477100|ref|YP_004616241.1| - 0.39 10.9 2.3 10 6.3 0.1 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Zn_ribbon_SprT PF17283.2 gi|336477100|ref|YP_004616241.1| - 1 9.3 8.8 15 5.6 7.4 2.4 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Ribosomal_L37ae PF01780.19 gi|336477101|ref|YP_004616242.1| - 5e-31 106.6 7.0 6e-31 106.4 7.0 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family HalOD2 PF18547.1 gi|336477101|ref|YP_004616242.1| - 0.02 14.8 1.4 0.02 14.8 1.4 2.0 2 1 1 3 3 3 0 Halobacterial output domain 2 C1_1 PF00130.22 gi|336477101|ref|YP_004616242.1| - 0.033 14.1 1.7 0.049 13.5 1.7 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.7 gi|336477101|ref|YP_004616242.1| - 0.057 13.4 2.5 0.094 12.7 2.5 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF4379 PF14311.6 gi|336477101|ref|YP_004616242.1| - 0.069 13.5 1.6 0.12 12.8 0.1 2.0 2 0 0 2 2 2 0 Probable Zinc-ribbon domain DUF951 PF06107.11 gi|336477101|ref|YP_004616242.1| - 0.14 12.1 2.9 0.3 11.0 2.9 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF951) C1_2 PF03107.16 gi|336477101|ref|YP_004616242.1| - 0.17 12.2 1.6 0.38 11.1 1.6 1.6 1 1 0 1 1 1 0 C1 domain RNase_PH PF01138.21 gi|336477102|ref|YP_004616243.1| - 1.3e-28 100.1 0.0 2.2e-28 99.4 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|336477102|ref|YP_004616243.1| - 1.7e-11 44.0 1.8 2e-11 43.8 0.9 1.6 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|336477103|ref|YP_004616244.1| - 4.4e-32 111.4 0.0 6.4e-32 110.8 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|336477103|ref|YP_004616244.1| - 9.6e-18 64.0 0.4 2.4e-17 62.7 0.4 1.7 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|336477104|ref|YP_004616245.1| - 3.3e-12 46.6 0.1 7e-12 45.5 0.1 1.6 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|336477104|ref|YP_004616245.1| - 3.2e-09 36.4 0.0 7.9e-09 35.2 0.0 1.7 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_1 PF00013.29 gi|336477104|ref|YP_004616245.1| - 3.3e-08 33.2 0.4 8e-08 32.0 0.4 1.7 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|336477104|ref|YP_004616245.1| - 0.0001 22.1 0.9 0.00018 21.3 0.4 1.7 2 0 0 2 2 2 1 KH domain S1 PF00575.23 gi|336477104|ref|YP_004616245.1| - 0.00018 21.8 0.1 0.00064 20.0 0.0 2.0 2 0 0 2 2 2 1 S1 RNA binding domain SBDS PF01172.18 gi|336477105|ref|YP_004616246.1| - 7.7e-24 83.6 0.2 1.3e-23 82.9 0.2 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|336477105|ref|YP_004616246.1| - 1e-22 80.3 0.4 1.5e-22 79.8 0.4 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|336477105|ref|YP_004616246.1| - 0.099 12.7 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus Proteasome PF00227.26 gi|336477106|ref|YP_004616247.1| - 6.8e-61 205.1 0.4 6.8e-61 205.1 0.4 1.7 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|336477106|ref|YP_004616247.1| - 1.7e-14 53.1 0.6 6.7e-14 51.3 0.1 2.2 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|336477107|ref|YP_004616248.1| - 6e-18 65.0 0.2 6.9e-18 64.8 0.2 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.16 gi|336477108|ref|YP_004616249.1| - 7.3e-45 153.1 0.1 8.6e-45 152.8 0.1 1.0 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.19 gi|336477108|ref|YP_004616249.1| - 0.04 14.2 0.0 0.043 14.1 0.0 1.2 1 0 0 1 1 1 0 PHP domain RNA_binding PF01877.17 gi|336477109|ref|YP_004616250.1| - 3.3e-35 120.9 0.7 3.9e-35 120.7 0.7 1.0 1 0 0 1 1 1 1 RNA binding MHC_II_alpha PF00993.20 gi|336477109|ref|YP_004616250.1| - 0.12 12.0 1.2 0.48 10.1 0.4 2.2 1 1 2 3 3 3 0 Class II histocompatibility antigen, alpha domain EFG_II PF14492.6 gi|336477109|ref|YP_004616250.1| - 0.13 12.3 0.3 5.3 7.2 0.1 2.3 2 0 0 2 2 2 0 Elongation Factor G, domain II Ribosomal_L15e PF00827.17 gi|336477110|ref|YP_004616251.1| - 1.2e-84 282.8 10.5 1.3e-84 282.7 10.5 1.0 1 0 0 1 1 1 1 Ribosomal L15 Vpu PF00558.19 gi|336477111|ref|YP_004616252.1| - 0.17 11.6 2.1 0.19 11.5 2.1 1.1 1 0 0 1 1 1 0 Vpu protein ThiS PF02597.20 gi|336477112|ref|YP_004616253.1| - 4.9e-05 23.9 0.1 5.6e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 ThiS family YdjM PF04307.14 gi|336477113|ref|YP_004616254.1| - 2.6e-16 59.4 3.3 3.6e-16 59.0 3.3 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF3307 PF11750.8 gi|336477113|ref|YP_004616254.1| - 0.0021 18.1 1.4 0.0021 18.1 1.4 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3307) SCAMP PF04144.13 gi|336477113|ref|YP_004616254.1| - 0.019 15.2 11.0 0.043 14.1 11.0 1.6 1 0 0 1 1 1 0 SCAMP family PsbK PF02533.15 gi|336477113|ref|YP_004616254.1| - 0.17 12.1 3.6 0.5 10.6 3.6 1.8 1 0 0 1 1 1 0 Photosystem II 4 kDa reaction centre component GAF_2 PF13185.6 gi|336477114|ref|YP_004616255.1| - 2.8e-26 92.5 0.0 4.5e-26 91.8 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|336477114|ref|YP_004616255.1| - 2.1e-18 66.8 0.6 4.4e-18 65.8 0.1 1.8 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|336477114|ref|YP_004616255.1| - 5.2e-08 33.1 0.4 1.7e-07 31.4 0.4 2.0 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|336477114|ref|YP_004616255.1| - 1.6e-05 24.8 0.5 7.3e-05 22.7 0.1 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|336477114|ref|YP_004616255.1| - 7.7e-05 22.6 0.0 0.00023 21.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|336477114|ref|YP_004616255.1| - 0.00016 21.6 0.0 0.00041 20.3 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|336477114|ref|YP_004616255.1| - 0.0024 18.1 0.0 0.013 15.7 0.0 2.1 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|336477114|ref|YP_004616255.1| - 0.0064 16.4 0.0 0.023 14.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain SpoVT_C PF15714.5 gi|336477114|ref|YP_004616255.1| - 0.014 15.4 0.5 3.2 7.8 0.0 3.2 2 1 1 3 3 3 0 Stage V sporulation protein T C-terminal, transcription factor SPOB_a PF14689.6 gi|336477114|ref|YP_004616255.1| - 0.025 14.3 0.2 0.08 12.7 0.0 1.9 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain GAF PF01590.26 gi|336477114|ref|YP_004616255.1| - 0.025 15.2 0.0 0.042 14.5 0.0 1.3 1 0 0 1 1 1 0 GAF domain GAF_3 PF13492.6 gi|336477114|ref|YP_004616255.1| - 0.045 14.1 0.0 0.11 12.8 0.0 1.7 1 1 0 1 1 1 0 GAF domain BetR PF08667.10 gi|336477114|ref|YP_004616255.1| - 0.055 13.5 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 BetR domain T2SSE PF00437.20 gi|336477115|ref|YP_004616256.1| - 1.2e-31 109.9 0.2 3.4e-31 108.3 0.0 1.9 3 0 0 3 3 3 1 Type II/IV secretion system protein Septin PF00735.18 gi|336477115|ref|YP_004616256.1| - 0.0051 16.1 0.9 1.1 8.4 0.1 3.0 3 0 0 3 3 3 2 Septin AAA_7 PF12775.7 gi|336477115|ref|YP_004616256.1| - 0.0058 16.2 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|336477115|ref|YP_004616256.1| - 0.01 16.3 0.0 0.033 14.6 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|336477115|ref|YP_004616256.1| - 0.04 13.9 0.0 0.14 12.2 0.0 1.9 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|336477115|ref|YP_004616256.1| - 0.049 12.9 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|336477115|ref|YP_004616256.1| - 0.054 14.0 0.1 0.14 12.7 0.1 1.8 1 0 0 1 1 1 0 ABC transporter cobW PF02492.19 gi|336477115|ref|YP_004616256.1| - 0.056 13.0 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|336477115|ref|YP_004616256.1| - 0.069 13.4 0.0 0.28 11.5 0.0 2.1 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|336477115|ref|YP_004616256.1| - 1.6 9.2 9.3 9.3 6.7 0.1 3.3 3 0 0 3 3 3 0 AAA domain DUF713 PF05218.14 gi|336477116|ref|YP_004616257.1| - 0.03 14.1 0.7 0.081 12.7 0.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF713) E2F_TDP PF02319.20 gi|336477116|ref|YP_004616257.1| - 0.13 12.3 0.1 0.32 11.1 0.1 1.6 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain Fer4_14 PF13394.6 gi|336477117|ref|YP_004616258.1| - 3.7e-07 30.3 0.1 1e-06 28.9 0.1 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|336477117|ref|YP_004616258.1| - 1.7e-06 28.5 0.1 4.5e-06 27.2 0.1 1.7 1 1 1 2 2 2 1 Radical SAM superfamily DUF2551 PF10826.8 gi|336477118|ref|YP_004616259.1| - 4.4e-33 113.4 0.5 5.2e-33 113.1 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.19 gi|336477118|ref|YP_004616259.1| - 0.0014 18.8 0.0 0.0018 18.4 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Penicillinase_R PF03965.16 gi|336477118|ref|YP_004616259.1| - 0.0047 17.3 0.0 0.0055 17.1 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor Prenyltransf PF01255.19 gi|336477119|ref|YP_004616260.1| - 4.7e-69 232.3 0.1 5.8e-69 232.0 0.1 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Aldo_ket_red PF00248.21 gi|336477121|ref|YP_004616262.1| - 1.1e-39 136.5 0.1 1.2e-37 129.8 0.1 2.1 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|336477121|ref|YP_004616262.1| - 4.3e-12 46.4 7.1 9.8e-12 45.2 7.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336477121|ref|YP_004616262.1| - 3e-08 33.7 6.2 6.1e-08 32.7 6.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336477121|ref|YP_004616262.1| - 1.2e-05 25.7 6.0 2.6e-05 24.6 6.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336477121|ref|YP_004616262.1| - 4.7e-05 23.4 5.1 0.015 15.4 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336477121|ref|YP_004616262.1| - 0.00011 23.0 6.4 0.00025 21.9 6.4 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|336477121|ref|YP_004616262.1| - 0.00012 21.7 2.1 0.00012 21.7 2.1 2.8 2 1 0 2 2 1 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336477121|ref|YP_004616262.1| - 0.00019 21.6 4.6 0.039 14.1 1.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336477121|ref|YP_004616262.1| - 0.00023 21.7 7.4 0.00057 20.4 7.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336477121|ref|YP_004616262.1| - 0.00035 20.6 8.9 0.001 19.2 9.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336477121|ref|YP_004616262.1| - 0.0023 18.8 5.3 0.0059 17.4 0.6 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336477121|ref|YP_004616262.1| - 0.03 14.4 2.0 0.03 14.4 2.0 2.5 2 0 0 2 2 1 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336477121|ref|YP_004616262.1| - 0.039 14.5 5.2 0.039 14.5 5.2 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|336477121|ref|YP_004616262.1| - 0.045 13.5 6.6 0.29 10.9 2.2 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.7 gi|336477121|ref|YP_004616262.1| - 1.8 8.8 15.3 0.15 12.2 3.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain HTH_24 PF13412.6 gi|336477122|ref|YP_004616263.1| - 2.5e-06 27.0 0.1 3.1e-06 26.7 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|336477122|ref|YP_004616263.1| - 4.6e-05 23.7 0.0 5.4e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|336477122|ref|YP_004616263.1| - 0.00021 21.2 0.0 0.00044 20.2 0.0 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|336477122|ref|YP_004616263.1| - 0.00026 20.8 0.0 0.00029 20.7 0.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|336477122|ref|YP_004616263.1| - 0.00037 20.3 0.1 0.00054 19.8 0.1 1.3 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|336477122|ref|YP_004616263.1| - 0.00059 19.6 0.0 0.00077 19.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TBPIP PF07106.13 gi|336477122|ref|YP_004616263.1| - 0.00099 19.0 0.2 0.0013 18.6 0.2 1.1 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain Phage_rep_O PF04492.13 gi|336477122|ref|YP_004616263.1| - 0.0015 19.1 0.0 0.0016 19.0 0.0 1.1 1 0 0 1 1 1 1 Bacteriophage replication protein O HTH_IclR PF09339.10 gi|336477122|ref|YP_004616263.1| - 0.0019 18.0 0.0 0.0022 17.7 0.0 1.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_19 PF12844.7 gi|336477122|ref|YP_004616263.1| - 0.0021 18.0 0.1 0.0024 17.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain z-alpha PF02295.17 gi|336477122|ref|YP_004616263.1| - 0.0039 17.2 0.2 0.0046 17.0 0.2 1.1 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain TFIIE_alpha PF02002.17 gi|336477122|ref|YP_004616263.1| - 0.0052 16.6 0.0 0.006 16.4 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.12 gi|336477122|ref|YP_004616263.1| - 0.0065 16.4 0.0 0.0066 16.4 0.0 1.0 1 0 0 1 1 1 1 HTH domain HTH_3 PF01381.22 gi|336477122|ref|YP_004616263.1| - 0.0081 16.2 0.0 0.0089 16.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix Phage_pRha PF09669.10 gi|336477122|ref|YP_004616263.1| - 0.02 15.5 0.0 0.026 15.1 0.0 1.2 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) DUF3783 PF12646.7 gi|336477122|ref|YP_004616263.1| - 0.026 14.5 0.3 0.53 10.3 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3783) HTH_36 PF13730.6 gi|336477122|ref|YP_004616263.1| - 0.038 14.0 0.0 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.12 gi|336477122|ref|YP_004616263.1| - 0.048 14.0 0.0 0.056 13.8 0.0 1.1 1 0 0 1 1 1 0 FaeA-like protein SMC_ScpB PF04079.16 gi|336477122|ref|YP_004616263.1| - 0.063 12.9 0.0 0.072 12.7 0.0 1.1 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB PPR_3 PF13812.6 gi|336477122|ref|YP_004616263.1| - 0.065 13.3 0.4 0.21 11.7 0.1 1.8 2 0 0 2 2 2 0 Pentatricopeptide repeat domain Fe_dep_repress PF01325.19 gi|336477122|ref|YP_004616263.1| - 0.092 13.0 0.1 0.11 12.7 0.1 1.1 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|336477122|ref|YP_004616263.1| - 0.11 12.1 0.0 0.14 11.9 0.0 1.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family BCCT PF02028.17 gi|336477123|ref|YP_004616264.1| - 6.7e-191 634.9 47.1 7.6e-191 634.8 47.1 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Imp-YgjV PF10688.9 gi|336477126|ref|YP_004616267.1| - 0.0052 16.6 5.0 0.0086 15.9 5.0 1.3 1 0 0 1 1 1 1 Bacterial inner membrane protein MtN3_slv PF03083.16 gi|336477126|ref|YP_004616267.1| - 0.0084 16.1 3.4 0.011 15.8 2.2 1.8 1 1 0 1 1 1 1 Sugar efflux transporter for intercellular exchange Acetyltransf_9 PF13527.7 gi|336477127|ref|YP_004616268.1| - 7.2e-11 42.3 0.0 1e-10 41.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336477127|ref|YP_004616268.1| - 1.7e-09 37.9 0.0 2.8e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336477127|ref|YP_004616268.1| - 9.1e-08 32.4 0.0 1.5e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336477127|ref|YP_004616268.1| - 4.2e-05 23.5 0.0 8.2e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336477127|ref|YP_004616268.1| - 0.081 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.6 gi|336477127|ref|YP_004616268.1| - 0.091 12.9 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase RNA_pol_A_bac PF01000.26 gi|336477128|ref|YP_004616269.1| - 1.2e-26 93.3 0.0 4.7e-26 91.4 0.0 1.9 2 1 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|336477128|ref|YP_004616269.1| - 5.1e-15 54.7 0.0 6.4e-15 54.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_9 PF13187.6 gi|336477128|ref|YP_004616269.1| - 1.5e-06 28.3 19.1 2.3e-06 27.7 11.8 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336477128|ref|YP_004616269.1| - 2.4e-06 28.4 13.3 0.01 16.8 2.0 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|336477128|ref|YP_004616269.1| - 7.8e-06 25.5 13.1 0.00035 20.3 3.7 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336477128|ref|YP_004616269.1| - 0.00019 21.5 18.2 0.0013 18.8 13.6 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336477128|ref|YP_004616269.1| - 0.0028 18.0 16.4 0.1 13.0 0.3 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336477128|ref|YP_004616269.1| - 0.0033 18.0 21.7 0.0054 17.3 13.9 3.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336477128|ref|YP_004616269.1| - 0.0076 16.3 22.9 0.12 12.5 2.7 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336477128|ref|YP_004616269.1| - 0.022 14.8 3.9 0.022 14.8 3.9 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336477128|ref|YP_004616269.1| - 1.3 9.6 21.8 1.5 9.4 4.5 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336477128|ref|YP_004616269.1| - 1.5 9.5 20.5 1.3 9.7 2.3 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|336477128|ref|YP_004616269.1| - 2.7 9.1 28.0 0.38 11.8 2.8 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336477128|ref|YP_004616269.1| - 2.7 8.2 20.2 0.2 11.8 12.0 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Ribosomal_S11 PF00411.19 gi|336477129|ref|YP_004616270.1| - 2.2e-46 156.8 2.6 3.2e-46 156.3 2.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|336477129|ref|YP_004616270.1| - 0.00036 20.3 0.1 0.00044 20.0 0.1 1.2 1 0 0 1 1 1 1 Pilus biogenesis CpaD protein (pilus_cpaD) CBM_25 PF03423.13 gi|336477129|ref|YP_004616270.1| - 0.086 13.1 0.3 0.22 11.8 0.0 1.7 2 0 0 2 2 2 0 Carbohydrate binding domain (family 25) Tox-PL-2 PF15643.6 gi|336477129|ref|YP_004616270.1| - 0.15 12.2 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 Papain fold toxin 2 S4 PF01479.25 gi|336477130|ref|YP_004616271.1| - 4.8e-13 48.6 0.0 1e-12 47.6 0.0 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S13 PF00416.22 gi|336477131|ref|YP_004616272.1| - 2.2e-42 144.4 1.1 2.7e-42 144.2 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|336477131|ref|YP_004616272.1| - 0.0062 15.3 0.0 0.0065 15.3 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF5358 PF17311.2 gi|336477131|ref|YP_004616272.1| - 0.063 13.3 0.0 0.091 12.8 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5358) NnrU PF07298.11 gi|336477132|ref|YP_004616273.1| - 1.1e-09 38.1 6.4 1.7e-09 37.5 6.4 1.3 1 1 0 1 1 1 1 NnrU protein PEMT PF04191.13 gi|336477132|ref|YP_004616273.1| - 0.006 17.0 0.4 0.006 17.0 0.4 2.2 2 1 0 2 2 2 1 Phospholipid methyltransferase EXS PF03124.14 gi|336477132|ref|YP_004616273.1| - 1 8.6 8.2 0.11 11.7 4.0 1.5 1 1 1 2 2 2 0 EXS family Baculo_11_kDa PF06143.11 gi|336477133|ref|YP_004616274.1| - 1.8 8.2 7.7 19 4.9 1.6 3.3 3 0 0 3 3 3 0 Baculovirus 11 kDa family TruB_C_2 PF16198.5 gi|336477134|ref|YP_004616275.1| - 5.9e-30 103.2 0.0 1.5e-29 101.9 0.0 1.7 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain TruB_N PF01509.18 gi|336477134|ref|YP_004616275.1| - 2.4e-24 86.4 0.7 1.8e-20 73.8 0.7 3.3 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.20 gi|336477134|ref|YP_004616275.1| - 2.7e-16 59.3 1.6 4.9e-16 58.5 0.7 2.0 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.12 gi|336477134|ref|YP_004616275.1| - 2.2e-14 53.3 0.5 4e-14 52.4 0.5 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain Cytidylate_kin2 PF13189.6 gi|336477135|ref|YP_004616276.1| - 2.9e-21 76.4 0.4 1.3e-19 71.0 0.4 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|336477135|ref|YP_004616276.1| - 2.1e-13 50.9 0.0 2.9e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|336477135|ref|YP_004616276.1| - 3.2e-11 43.8 0.1 9.2e-11 42.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|336477135|ref|YP_004616276.1| - 4.3e-10 39.7 1.6 2.1e-05 24.3 0.3 2.1 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|336477135|ref|YP_004616276.1| - 0.00013 22.1 0.0 0.00099 19.2 0.0 2.1 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|336477135|ref|YP_004616276.1| - 0.0008 19.6 0.0 0.023 14.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|336477135|ref|YP_004616276.1| - 0.0011 19.1 0.1 0.0034 17.5 0.1 1.8 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.6 gi|336477135|ref|YP_004616276.1| - 0.0026 18.0 0.0 0.0043 17.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|336477135|ref|YP_004616276.1| - 0.0046 16.7 0.1 2 8.1 0.0 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase Sulfotransfer_3 PF13469.6 gi|336477135|ref|YP_004616276.1| - 0.012 16.0 0.0 0.014 15.8 0.0 1.2 1 0 0 1 1 1 0 Sulfotransferase family DUF276 PF03434.13 gi|336477135|ref|YP_004616276.1| - 0.015 14.5 0.5 0.023 13.9 0.5 1.3 1 0 0 1 1 1 0 DUF276 dNK PF01712.19 gi|336477135|ref|YP_004616276.1| - 0.036 13.9 0.1 8.3 6.2 0.0 2.2 1 1 0 2 2 2 0 Deoxynucleoside kinase EMC3_TMCO1 PF01956.16 gi|336477136|ref|YP_004616277.1| - 1.3e-42 145.4 5.6 1.6e-42 145.2 5.6 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like ALC PF17527.2 gi|336477136|ref|YP_004616277.1| - 0.02 14.5 0.8 0.028 14.1 0.8 1.1 1 0 0 1 1 1 0 Phage ALC protein DUF4199 PF13858.6 gi|336477136|ref|YP_004616277.1| - 2.7 8.4 11.1 80 3.6 11.2 2.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) 60KD_IMP PF02096.20 gi|336477136|ref|YP_004616277.1| - 9.8 6.0 10.7 14 5.5 9.9 1.8 1 1 0 1 1 1 0 60Kd inner membrane protein ADK PF00406.22 gi|336477137|ref|YP_004616278.1| - 2.3e-59 199.8 0.0 2.8e-59 199.6 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|336477137|ref|YP_004616278.1| - 6.6e-31 107.6 0.0 1.1e-30 106.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|336477137|ref|YP_004616278.1| - 3.1e-18 65.4 3.0 8.6e-18 64.0 2.0 2.1 2 0 0 2 2 2 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|336477137|ref|YP_004616278.1| - 4.9e-07 30.4 0.0 1.1e-06 29.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain Hydin_ADK PF17213.3 gi|336477137|ref|YP_004616278.1| - 6.1e-05 23.4 0.3 0.088 13.1 0.0 2.8 2 1 1 3 3 3 2 Hydin Adenylate kinase-like domain AAA_33 PF13671.6 gi|336477137|ref|YP_004616278.1| - 0.00049 20.3 0.0 0.0009 19.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain TF_Zn_Ribbon PF08271.12 gi|336477137|ref|YP_004616278.1| - 0.0087 15.5 1.2 0.016 14.7 1.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cytidylate_kin PF02224.18 gi|336477137|ref|YP_004616278.1| - 0.034 13.9 0.0 0.056 13.2 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase A2L_zn_ribbon PF08792.10 gi|336477137|ref|YP_004616278.1| - 0.04 13.6 0.4 2 8.2 0.0 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF5402 PF17393.2 gi|336477137|ref|YP_004616278.1| - 0.046 13.7 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5402) Mg_chelatase PF01078.21 gi|336477137|ref|YP_004616278.1| - 0.13 11.6 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Prok-RING_1 PF14446.6 gi|336477137|ref|YP_004616278.1| - 0.15 12.0 4.0 1.7 8.6 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 GATA PF00320.27 gi|336477137|ref|YP_004616278.1| - 0.38 10.4 1.5 0.46 10.1 0.1 1.8 2 0 0 2 2 2 0 GATA zinc finger Zn_ribbon_recom PF13408.6 gi|336477137|ref|YP_004616278.1| - 0.4 11.2 2.1 3.5 8.2 2.1 2.3 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain SecY PF00344.20 gi|336477138|ref|YP_004616279.1| - 5.1e-64 216.4 23.1 6.1e-64 216.2 23.1 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|336477138|ref|YP_004616279.1| - 3.2e-10 39.7 0.1 1.2e-09 37.9 0.1 2.1 1 0 0 1 1 1 1 Plug domain of Sec61p Syndecan PF01034.20 gi|336477138|ref|YP_004616279.1| - 1.6 8.7 9.6 4.8 7.2 3.0 3.3 2 0 0 2 2 2 0 Syndecan domain Ribosomal_L27A PF00828.19 gi|336477139|ref|YP_004616280.1| - 5.5e-23 82.0 2.1 6.8e-23 81.7 2.1 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|336477139|ref|YP_004616280.1| - 0.0066 15.9 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L30 PF00327.20 gi|336477140|ref|YP_004616281.1| - 2.6e-17 62.4 0.9 4.8e-17 61.6 0.2 1.8 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 gi|336477141|ref|YP_004616282.1| - 3.8e-25 87.6 0.5 8.2e-25 86.6 0.5 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|336477141|ref|YP_004616282.1| - 5.5e-23 80.2 0.3 9.2e-23 79.5 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|336477142|ref|YP_004616283.1| - 1.4e-33 116.2 3.0 2.4e-22 79.7 1.3 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|336477142|ref|YP_004616283.1| - 9.8e-06 25.9 0.1 1.2e-05 25.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|336477143|ref|YP_004616284.1| - 2.1e-56 190.0 10.8 2.4e-56 189.8 10.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Lant_dehydr_C PF14028.6 gi|336477143|ref|YP_004616284.1| - 0.0081 15.7 0.3 0.0092 15.6 0.3 1.2 1 0 0 1 1 1 1 Lantibiotic biosynthesis dehydratase C-term CdhD PF03599.16 gi|336477143|ref|YP_004616284.1| - 0.018 13.8 0.0 0.023 13.4 0.0 1.2 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF1943 PF09172.11 gi|336477143|ref|YP_004616284.1| - 0.038 13.2 0.7 0.039 13.2 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1943) CoA_binding_2 PF13380.6 gi|336477143|ref|YP_004616284.1| - 0.1 13.1 0.0 0.16 12.5 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain DUF573 PF04504.14 gi|336477143|ref|YP_004616284.1| - 0.84 10.3 5.0 4.7 7.9 5.0 2.2 1 1 0 1 1 1 0 Protein of unknown function, DUF573 Ribosomal_L32e PF01655.18 gi|336477144|ref|YP_004616285.1| - 2.2e-34 118.1 0.1 2.8e-34 117.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|336477145|ref|YP_004616286.1| - 3.2e-30 104.6 3.9 2.9e-15 56.7 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 FTR_C PF02741.15 gi|336477145|ref|YP_004616286.1| - 0.021 14.9 1.0 2 8.4 0.1 2.8 3 0 0 3 3 3 0 FTR, proximal lobe Ribosomal_S8 PF00410.19 gi|336477146|ref|YP_004616287.1| - 6.6e-28 97.2 0.0 8.1e-28 96.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|336477147|ref|YP_004616288.1| - 1.1e-13 50.7 2.9 1.1e-13 50.7 2.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-UBR PF02207.20 gi|336477147|ref|YP_004616288.1| - 0.0062 16.7 1.3 0.0068 16.6 1.3 1.1 1 0 0 1 1 1 1 Putative zinc finger in N-recognin (UBR box) MRNIP PF15749.5 gi|336477147|ref|YP_004616288.1| - 0.011 16.5 1.2 0.011 16.5 1.2 1.1 1 0 0 1 1 1 0 MRN-interacting protein Rsm1 PF08600.10 gi|336477147|ref|YP_004616288.1| - 0.61 10.3 6.8 2.4 8.4 0.2 2.1 1 1 1 2 2 2 0 Rsm1-like Ribosomal_L5_C PF00673.21 gi|336477148|ref|YP_004616289.1| - 2e-26 92.0 0.0 3.3e-26 91.3 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|336477148|ref|YP_004616289.1| - 3e-18 65.9 0.1 5.3e-18 65.1 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|336477149|ref|YP_004616290.1| - 3.4e-21 74.9 0.5 6.4e-21 74.0 0.5 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|336477149|ref|YP_004616290.1| - 5.4e-10 39.2 6.4 8.3e-10 38.6 6.4 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|336477149|ref|YP_004616290.1| - 5.2e-06 26.1 0.3 2.3e-05 24.0 0.0 2.2 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 gi|336477149|ref|YP_004616290.1| - 0.00068 19.5 0.0 0.002 18.0 0.0 1.9 1 0 0 1 1 1 1 KOW motif S4_2 PF13275.6 gi|336477149|ref|YP_004616290.1| - 0.022 14.6 0.0 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 S4 domain ComC PF03047.14 gi|336477149|ref|YP_004616290.1| - 6.4 6.7 5.7 17 5.4 0.1 3.0 4 0 0 4 4 4 0 COMC family Ribosomal_L26 PF16906.5 gi|336477150|ref|YP_004616291.1| - 4.3e-31 107.2 0.5 5.1e-31 107.0 0.5 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|336477150|ref|YP_004616291.1| - 0.0025 17.7 0.1 0.0046 16.9 0.1 1.4 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.19 gi|336477151|ref|YP_004616292.1| - 5.9e-36 123.2 1.3 6.5e-36 123.1 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|336477152|ref|YP_004616293.1| - 4.9e-28 97.0 3.6 6.1e-28 96.7 3.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|336477152|ref|YP_004616293.1| - 0.007 16.7 0.1 0.023 15.0 0.0 1.9 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|336477153|ref|YP_004616294.1| - 1.5e-26 92.1 0.1 1.8e-26 91.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 CooC_C PF15976.5 gi|336477153|ref|YP_004616294.1| - 0.011 15.8 0.4 0.013 15.5 0.4 1.1 1 0 0 1 1 1 0 CS1-pili formation C-terminal RMI2 PF16100.5 gi|336477153|ref|YP_004616294.1| - 0.064 13.1 0.0 0.073 12.9 0.0 1.1 1 0 0 1 1 1 0 RecQ-mediated genome instability protein 2 Myosin_N PF02736.19 gi|336477153|ref|YP_004616294.1| - 0.18 11.6 0.3 0.3 10.9 0.3 1.4 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain Ribosomal_L29 PF00831.23 gi|336477154|ref|YP_004616295.1| - 1.7e-15 56.7 0.1 2.2e-15 56.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.20 gi|336477155|ref|YP_004616296.1| - 2.6e-21 75.9 1.4 3.5e-21 75.5 0.4 1.8 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|336477155|ref|YP_004616296.1| - 7.3e-14 51.4 0.0 1.8e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|336477155|ref|YP_004616296.1| - 0.15 11.9 0.6 0.38 10.6 0.1 2.0 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.19 gi|336477156|ref|YP_004616297.1| - 1.3e-30 105.6 0.6 1.6e-30 105.4 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|336477157|ref|YP_004616298.1| - 1.4e-27 95.4 1.7 2.1e-27 94.8 1.7 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Myb_DNA-bind_7 PF15963.5 gi|336477157|ref|YP_004616298.1| - 0.0034 17.2 0.3 0.0052 16.6 0.3 1.3 1 0 0 1 1 1 1 Myb DNA-binding like Ribosomal_L2_C PF03947.18 gi|336477158|ref|YP_004616299.1| - 4.1e-46 156.3 2.3 6.7e-46 155.6 1.5 1.7 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|336477158|ref|YP_004616299.1| - 1.5e-16 60.1 0.1 4.7e-16 58.5 0.0 2.0 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain MRP_L53 PF10780.9 gi|336477158|ref|YP_004616299.1| - 0.051 13.8 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 39S ribosomal protein L53/MRP-L53 Ribosomal_L23 PF00276.20 gi|336477159|ref|YP_004616300.1| - 1.6e-15 57.2 0.8 1.3e-14 54.4 0.8 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 Asp_protease_2 PF13650.6 gi|336477159|ref|YP_004616300.1| - 0.00041 20.9 0.1 0.00049 20.7 0.1 1.1 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|336477159|ref|YP_004616300.1| - 0.022 15.3 0.1 0.024 15.2 0.1 1.2 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease DA1-like PF12315.8 gi|336477159|ref|YP_004616300.1| - 0.031 13.6 0.0 0.034 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein DA1 DUF3087 PF11286.8 gi|336477159|ref|YP_004616300.1| - 0.076 12.5 0.0 0.079 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) Ribosomal_L4 PF00573.22 gi|336477160|ref|YP_004616301.1| - 1.2e-49 168.6 0.1 1.4e-49 168.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|336477161|ref|YP_004616302.1| - 2.8e-87 293.1 0.0 5.3e-87 292.2 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L3 POR PF01558.18 gi|336477162|ref|YP_004616303.1| - 1.1e-36 126.6 0.0 1.2e-36 126.4 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|336477163|ref|YP_004616304.1| - 2.1e-23 82.8 0.1 4.5e-23 81.7 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|336477163|ref|YP_004616304.1| - 1.7e-12 47.6 0.1 2.8e-12 46.9 0.1 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|336477163|ref|YP_004616304.1| - 1.2e-07 31.2 9.9 0.0003 20.5 1.4 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336477163|ref|YP_004616304.1| - 2e-05 24.6 11.1 5.2e-05 23.3 11.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336477163|ref|YP_004616304.1| - 3.7e-05 23.8 10.8 3.7e-05 23.8 10.8 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|336477163|ref|YP_004616304.1| - 0.00013 21.6 0.1 0.0027 17.3 0.1 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_2 PF12797.7 gi|336477163|ref|YP_004616304.1| - 0.0002 21.2 14.9 0.0025 17.8 2.1 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336477163|ref|YP_004616304.1| - 0.00033 20.7 9.4 0.0012 18.9 9.4 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336477163|ref|YP_004616304.1| - 0.007 16.9 11.4 0.007 16.9 11.4 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain PFOR_II PF17147.4 gi|336477163|ref|YP_004616304.1| - 0.018 15.4 0.1 0.018 15.4 0.1 1.8 2 0 0 2 2 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Fer4_4 PF12800.7 gi|336477163|ref|YP_004616304.1| - 0.032 14.7 12.0 0.4 11.3 2.1 3.0 2 0 0 2 2 2 0 4Fe-4S binding domain Transket_pyr PF02779.24 gi|336477163|ref|YP_004616304.1| - 0.14 11.8 0.5 0.51 10.0 0.5 1.8 1 1 0 1 1 1 0 Transketolase, pyrimidine binding domain Fer4_3 PF12798.7 gi|336477163|ref|YP_004616304.1| - 0.2 12.7 13.3 0.37 11.8 5.0 3.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336477163|ref|YP_004616304.1| - 0.33 11.1 16.7 0.17 12.0 1.7 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336477163|ref|YP_004616304.1| - 4.3 8.3 13.0 1.4 9.9 2.1 2.6 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain OMPdecase PF00215.24 gi|336477164|ref|YP_004616305.1| - 5.1e-40 137.4 0.1 6.6e-40 137.1 0.1 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|336477164|ref|YP_004616305.1| - 0.03 13.7 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DS PF01916.17 gi|336477165|ref|YP_004616306.1| - 2.8e-100 335.3 0.0 3.2e-100 335.1 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase AMP-binding PF00501.28 gi|336477166|ref|YP_004616307.1| - 5.5e-94 315.1 0.0 6.7e-94 314.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|336477166|ref|YP_004616307.1| - 2.8e-28 98.7 0.4 6.2e-28 97.6 0.4 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|336477166|ref|YP_004616307.1| - 1.5e-16 60.0 3.2 1.5e-16 60.0 3.2 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus Metallophos PF00149.28 gi|336477168|ref|YP_004616309.1| - 7.2e-08 33.2 0.0 9.2e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|336477168|ref|YP_004616309.1| - 0.00036 20.8 0.0 0.00056 20.1 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Exo_endo_phos_2 PF14529.6 gi|336477168|ref|YP_004616309.1| - 0.061 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Endonuclease-reverse transcriptase Aldo_ket_red PF00248.21 gi|336477168|ref|YP_004616309.1| - 0.071 12.3 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Aldo/keto reductase family Metallophos_3 PF14582.6 gi|336477168|ref|YP_004616309.1| - 0.12 11.7 0.1 0.3 10.4 0.1 1.7 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily DEAD PF00270.29 gi|336477169|ref|YP_004616310.1| - 1.2e-31 109.8 0.1 4.2e-31 108.1 0.1 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|336477169|ref|YP_004616310.1| - 7.3e-31 107.4 0.0 1.6e-30 106.3 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|336477169|ref|YP_004616310.1| - 2.7e-22 79.2 0.8 6e-20 71.7 0.0 3.3 4 0 0 4 4 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|336477169|ref|YP_004616310.1| - 6e-09 36.1 0.0 1.5e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|336477169|ref|YP_004616310.1| - 3.2e-05 22.8 0.0 6e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_19 PF13245.6 gi|336477169|ref|YP_004616310.1| - 0.012 15.9 0.3 1.2 9.5 0.2 3.3 2 2 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|336477169|ref|YP_004616310.1| - 0.092 13.0 1.8 2.9 8.1 1.1 3.0 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|336477169|ref|YP_004616310.1| - 0.097 12.2 0.1 0.52 9.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain Ribosomal_S13 PF00416.22 gi|336477169|ref|YP_004616310.1| - 0.19 12.1 2.1 1.2 9.6 0.0 3.0 3 0 0 3 3 3 0 Ribosomal protein S13/S18 CM_2 PF01817.21 gi|336477169|ref|YP_004616310.1| - 0.68 10.3 6.1 65 4.0 1.6 4.4 4 0 0 4 4 4 0 Chorismate mutase type II UvrD-helicase PF00580.21 gi|336477169|ref|YP_004616310.1| - 1.7 8.1 4.7 4.3 6.7 0.1 2.7 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain Fer4_13 PF13370.6 gi|336477170|ref|YP_004616311.1| - 3e-22 78.9 6.5 3.5e-22 78.7 6.5 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|336477170|ref|YP_004616311.1| - 6.5e-09 36.4 4.4 9.1e-09 35.9 4.4 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.6 gi|336477170|ref|YP_004616311.1| - 0.0026 17.9 1.7 0.0052 16.9 1.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336477170|ref|YP_004616311.1| - 0.0039 17.3 12.4 0.016 15.3 4.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336477170|ref|YP_004616311.1| - 0.0039 16.9 10.3 0.0089 15.8 2.4 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|336477170|ref|YP_004616311.1| - 0.0068 16.4 0.9 0.0068 16.4 0.9 2.1 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336477170|ref|YP_004616311.1| - 0.013 16.1 3.4 0.041 14.5 3.5 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain PCYCGC PF13798.6 gi|336477170|ref|YP_004616311.1| - 0.03 14.2 0.0 0.031 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function with PCYCGC motif Fer4_10 PF13237.6 gi|336477170|ref|YP_004616311.1| - 0.055 13.6 3.4 0.14 12.3 3.5 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fe_dep_repress PF01325.19 gi|336477171|ref|YP_004616312.1| - 6.3e-21 74.3 0.9 1e-20 73.6 0.9 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|336477171|ref|YP_004616312.1| - 9.3e-15 54.5 0.0 1.6e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|336477171|ref|YP_004616312.1| - 0.00018 21.4 0.0 0.00027 20.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|336477171|ref|YP_004616312.1| - 0.00029 20.3 0.0 0.00052 19.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|336477171|ref|YP_004616312.1| - 0.00051 19.9 0.1 0.00095 19.0 0.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_6 PF01418.17 gi|336477171|ref|YP_004616312.1| - 0.0025 17.8 0.0 0.0061 16.5 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain, rpiR family MarR PF01047.22 gi|336477171|ref|YP_004616312.1| - 0.0031 17.4 0.0 0.0069 16.3 0.0 1.5 1 0 0 1 1 1 1 MarR family FeoC PF09012.10 gi|336477171|ref|YP_004616312.1| - 0.0043 17.1 0.0 0.011 15.7 0.0 1.7 1 1 0 1 1 1 1 FeoC like transcriptional regulator Rrf2 PF02082.20 gi|336477171|ref|YP_004616312.1| - 0.005 17.2 0.0 0.0077 16.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 gi|336477171|ref|YP_004616312.1| - 0.014 15.2 0.0 0.03 14.1 0.0 1.6 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|336477171|ref|YP_004616312.1| - 0.016 15.0 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|336477171|ref|YP_004616312.1| - 0.018 15.0 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Mnd1 PF03962.15 gi|336477171|ref|YP_004616312.1| - 0.035 14.4 0.2 0.68 10.3 0.0 2.8 1 1 2 3 3 3 0 Mnd1 HTH domain DUF5065 PF16723.5 gi|336477171|ref|YP_004616312.1| - 0.084 12.9 0.2 0.1 12.6 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5065) HTH_5 PF01022.20 gi|336477171|ref|YP_004616312.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|336477171|ref|YP_004616312.1| - 0.14 12.2 0.0 0.4 10.7 0.0 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.10 gi|336477171|ref|YP_004616312.1| - 0.22 11.3 0.0 0.45 10.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain EamA PF00892.20 gi|336477172|ref|YP_004616313.1| - 1e-35 122.9 41.8 4.8e-19 68.9 16.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 gi|336477172|ref|YP_004616313.1| - 0.00039 20.0 8.9 0.00039 20.0 8.9 2.0 1 1 0 2 2 2 1 Solute carrier family 35 TPT PF03151.16 gi|336477172|ref|YP_004616313.1| - 0.003 16.9 4.9 0.003 16.9 4.9 2.3 2 2 0 2 2 2 1 Triose-phosphate Transporter family Radical_SAM PF04055.21 gi|336477173|ref|YP_004616314.1| - 0.0011 19.3 0.1 0.0021 18.4 0.1 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Synapsin PF02078.16 gi|336477173|ref|YP_004616314.1| - 0.026 14.8 0.0 0.064 13.6 0.0 1.6 1 0 0 1 1 1 0 Synapsin, N-terminal domain Fer4_14 PF13394.6 gi|336477173|ref|YP_004616314.1| - 0.13 12.4 0.3 0.61 10.2 0.3 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain NMT1 PF09084.11 gi|336477174|ref|YP_004616315.1| - 1.1e-21 77.8 0.0 1.6e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 gi|336477174|ref|YP_004616315.1| - 2.2e-17 63.6 0.0 3.1e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 gi|336477174|ref|YP_004616315.1| - 3.1e-06 26.8 0.0 5e-06 26.1 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|336477174|ref|YP_004616315.1| - 3.1e-06 27.0 0.0 2.8e-05 23.8 0.0 2.0 1 1 1 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 gi|336477174|ref|YP_004616315.1| - 0.0039 16.6 0.0 0.009 15.5 0.0 1.5 1 1 0 1 1 1 1 NMT1-like family DctP PF03480.13 gi|336477174|ref|YP_004616315.1| - 0.045 13.1 0.0 0.076 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 DUF2025 PF09634.10 gi|336477174|ref|YP_004616315.1| - 0.15 12.1 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2025) Ibs_toxin PF13956.6 gi|336477174|ref|YP_004616315.1| - 0.73 9.9 2.4 1.7 8.8 2.4 1.6 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system BPD_transp_1 PF00528.22 gi|336477175|ref|YP_004616316.1| - 1.6e-15 57.3 18.0 1.6e-15 57.3 18.0 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|336477176|ref|YP_004616317.1| - 1.8e-30 106.2 0.0 2.7e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336477176|ref|YP_004616317.1| - 3.8e-06 26.9 0.1 0.08 12.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|336477176|ref|YP_004616317.1| - 1.7e-05 24.8 0.0 3.3e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 gi|336477176|ref|YP_004616317.1| - 3.3e-05 24.2 0.0 0.024 14.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 gi|336477176|ref|YP_004616317.1| - 0.00017 21.1 0.2 0.19 11.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|336477176|ref|YP_004616317.1| - 0.00046 20.0 0.1 0.3 10.8 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|336477176|ref|YP_004616317.1| - 0.00098 19.5 0.0 0.0023 18.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336477176|ref|YP_004616317.1| - 0.0013 19.0 0.0 0.0032 17.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|336477176|ref|YP_004616317.1| - 0.0014 19.1 0.1 0.011 16.2 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|336477176|ref|YP_004616317.1| - 0.0019 18.2 0.1 0.0045 16.9 0.0 1.7 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|336477176|ref|YP_004616317.1| - 0.0025 17.5 0.0 0.0058 16.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|336477176|ref|YP_004616317.1| - 0.015 15.4 0.1 0.05 13.7 0.0 2.0 2 1 1 3 3 3 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|336477176|ref|YP_004616317.1| - 0.032 14.7 0.4 0.069 13.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|336477176|ref|YP_004616317.1| - 0.04 13.5 0.0 0.076 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|336477176|ref|YP_004616317.1| - 0.062 13.2 0.1 0.1 12.5 0.1 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|336477176|ref|YP_004616317.1| - 0.065 13.1 0.1 0.78 9.6 0.0 2.1 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|336477176|ref|YP_004616317.1| - 0.076 13.4 0.0 0.17 12.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|336477176|ref|YP_004616317.1| - 0.077 13.5 0.2 0.15 12.6 0.2 1.9 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|336477176|ref|YP_004616317.1| - 0.1 12.0 0.1 0.39 10.0 0.0 1.8 2 0 0 2 2 2 0 KaiC SbcCD_C PF13558.6 gi|336477176|ref|YP_004616317.1| - 0.21 11.8 0.9 0.71 10.1 0.4 2.1 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit HTH_24 PF13412.6 gi|336477177|ref|YP_004616318.1| - 0.00011 21.7 0.1 0.00018 21.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|336477177|ref|YP_004616318.1| - 0.00033 20.5 0.0 0.00055 19.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|336477177|ref|YP_004616318.1| - 0.00048 20.0 0.0 0.00085 19.2 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|336477177|ref|YP_004616318.1| - 0.00054 19.8 0.0 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF1959 PF09218.10 gi|336477177|ref|YP_004616318.1| - 0.0023 18.1 0.1 0.0047 17.0 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1959) Rrf2 PF02082.20 gi|336477177|ref|YP_004616318.1| - 0.0044 17.3 0.1 0.0095 16.3 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.6 gi|336477177|ref|YP_004616318.1| - 0.0047 16.9 0.4 0.0073 16.3 0.4 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|336477177|ref|YP_004616318.1| - 0.0051 16.8 0.0 0.0081 16.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|336477177|ref|YP_004616318.1| - 0.0083 16.2 0.1 0.021 14.9 0.1 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) RP-C PF03428.13 gi|336477177|ref|YP_004616318.1| - 0.011 15.4 0.4 0.021 14.5 0.1 1.6 1 1 1 2 2 2 0 Replication protein C N-terminal domain HTH_Crp_2 PF13545.6 gi|336477177|ref|YP_004616318.1| - 0.017 15.1 0.1 0.032 14.2 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RPA_C PF08784.11 gi|336477177|ref|YP_004616318.1| - 0.025 15.2 0.0 0.039 14.6 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal MarR_2 PF12802.7 gi|336477177|ref|YP_004616318.1| - 0.054 13.4 0.0 0.086 12.7 0.0 1.4 1 0 0 1 1 1 0 MarR family EAP30 PF04157.16 gi|336477177|ref|YP_004616318.1| - 0.076 12.3 0.0 0.14 11.4 0.0 1.5 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_36 PF13730.6 gi|336477177|ref|YP_004616318.1| - 0.077 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|336477177|ref|YP_004616318.1| - 0.14 12.2 0.8 0.39 10.8 0.0 2.2 3 1 0 3 3 3 0 Putative DNA-binding protein N-terminus Fe_dep_repress PF01325.19 gi|336477177|ref|YP_004616318.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Cpn10 PF00166.21 gi|336477178|ref|YP_004616319.1| - 1.2e-24 86.2 0.8 1.3e-24 86.1 0.8 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit Cpn60_TCP1 PF00118.24 gi|336477179|ref|YP_004616320.1| - 3.5e-97 326.1 20.7 1.7e-96 323.8 20.7 1.8 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family Flavodoxin_2 PF02525.17 gi|336477180|ref|YP_004616321.1| - 4.3e-52 176.7 0.0 5.1e-52 176.5 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|336477180|ref|YP_004616321.1| - 3.3e-12 46.4 0.0 5.1e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase DNA_gyraseB PF00204.25 gi|336477181|ref|YP_004616322.1| - 2.2e-65 219.4 0.6 3.5e-65 218.7 0.6 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|336477181|ref|YP_004616322.1| - 9.5e-31 105.8 0.1 1.8e-30 104.9 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|336477181|ref|YP_004616322.1| - 3.1e-21 76.0 0.1 8.6e-21 74.5 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|336477181|ref|YP_004616322.1| - 1.1e-16 60.9 0.0 2.7e-16 59.7 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|336477181|ref|YP_004616322.1| - 0.00087 19.1 0.8 0.0036 17.1 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PEPcase_2 PF14010.6 gi|336477181|ref|YP_004616322.1| - 0.051 12.1 0.7 0.12 10.9 0.3 1.7 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxylase DNA_topoisoIV PF00521.20 gi|336477182|ref|YP_004616323.1| - 1.5e-161 538.1 2.5 2.1e-161 537.6 2.5 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|336477182|ref|YP_004616323.1| - 2.3e-77 254.3 19.5 1e-15 56.9 1.2 7.0 7 0 0 7 7 7 6 DNA gyrase C-terminal domain, beta-propeller SOR_SNZ PF01680.17 gi|336477183|ref|YP_004616324.1| - 4.7e-105 349.9 8.4 6.1e-105 349.5 8.4 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|336477183|ref|YP_004616324.1| - 2.4e-10 40.1 5.7 3.3e-07 29.9 0.4 2.4 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|336477183|ref|YP_004616324.1| - 6.7e-05 22.1 1.3 0.11 11.5 0.1 2.5 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|336477183|ref|YP_004616324.1| - 0.00054 19.2 0.2 0.01 15.0 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|336477183|ref|YP_004616324.1| - 0.00067 18.9 2.8 0.023 13.9 0.0 2.9 2 2 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.12 gi|336477183|ref|YP_004616324.1| - 0.0054 15.9 0.4 0.1 11.7 0.0 2.3 1 1 1 3 3 3 1 Protein of unknown function (DUF561) NMO PF03060.15 gi|336477183|ref|YP_004616324.1| - 0.0067 15.9 8.2 0.0077 15.7 0.4 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase MCM_lid PF17855.1 gi|336477183|ref|YP_004616324.1| - 0.012 16.1 0.2 0.081 13.4 0.0 2.4 4 0 0 4 4 3 0 MCM AAA-lid domain OMPdecase PF00215.24 gi|336477183|ref|YP_004616324.1| - 0.032 13.8 0.2 0.12 11.9 0.2 1.9 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family TetR_C_27 PF17935.1 gi|336477183|ref|YP_004616324.1| - 0.034 14.2 0.0 0.13 12.4 0.0 1.9 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF3175 PF11373.8 gi|336477183|ref|YP_004616324.1| - 0.16 12.2 0.0 0.35 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3175) SNO PF01174.19 gi|336477184|ref|YP_004616325.1| - 7.6e-46 156.3 0.0 8.7e-46 156.1 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|336477184|ref|YP_004616325.1| - 2.3e-07 30.6 0.2 7.3e-07 29.0 0.1 1.8 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|336477184|ref|YP_004616325.1| - 3.6e-05 23.6 0.0 0.0019 18.0 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|336477184|ref|YP_004616325.1| - 0.00019 21.2 0.0 0.00025 20.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 Peptidase_C26 PF07722.13 gi|336477184|ref|YP_004616325.1| - 0.06 13.1 0.6 6.1 6.5 0.2 2.7 2 1 1 3 3 3 0 Peptidase C26 Ribosomal_S6e PF01092.19 gi|336477185|ref|YP_004616326.1| - 3.4e-42 143.4 0.7 3.8e-42 143.2 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.27 gi|336477186|ref|YP_004616327.1| - 1.1e-31 109.9 0.1 3.5e-30 105.0 0.1 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|336477186|ref|YP_004616327.1| - 5.4e-26 90.3 2.2 5.4e-26 90.3 2.2 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|336477186|ref|YP_004616327.1| - 3e-22 78.7 2.5 3.7e-22 78.4 0.5 2.2 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|336477186|ref|YP_004616327.1| - 7.7e-12 45.4 6.9 3.7e-11 43.3 0.3 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|336477186|ref|YP_004616327.1| - 1.8e-07 31.3 0.1 6e-07 29.5 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|336477186|ref|YP_004616327.1| - 0.0092 16.1 0.1 0.47 10.5 0.0 3.0 3 0 0 3 3 3 1 Dynamin family ATP_bind_1 PF03029.17 gi|336477186|ref|YP_004616327.1| - 0.022 14.5 0.0 0.051 13.4 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NDK PF00334.19 gi|336477187|ref|YP_004616328.1| - 4.1e-55 185.5 0.1 4.7e-55 185.3 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|336477188|ref|YP_004616329.1| - 1.1e-17 64.0 1.2 1.2e-17 63.9 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|336477188|ref|YP_004616329.1| - 2e-05 24.4 6.6 2.5e-05 24.1 6.6 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Opiods_neuropep PF01160.18 gi|336477188|ref|YP_004616329.1| - 0.031 14.4 0.4 0.2 11.8 0.4 2.0 1 1 0 1 1 1 0 Vertebrate endogenous opioids neuropeptide zf-ribbon_3 PF13248.6 gi|336477188|ref|YP_004616329.1| - 0.043 13.2 1.6 0.35 10.3 0.1 2.5 2 1 1 3 3 3 0 zinc-ribbon domain YHS PF04945.13 gi|336477188|ref|YP_004616329.1| - 0.052 13.7 5.2 0.079 13.1 5.2 1.4 1 1 0 1 1 1 0 YHS domain VATC PF18716.1 gi|336477188|ref|YP_004616329.1| - 0.33 10.8 10.0 0.89 9.5 10.0 1.7 1 1 0 1 1 1 0 Vms1-associating treble clef domain Ribosomal_S28e PF01200.18 gi|336477189|ref|YP_004616330.1| - 8.4e-28 96.2 0.3 9.4e-28 96.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|336477190|ref|YP_004616331.1| - 1.5e-27 95.2 1.5 1.7e-27 95.0 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|336477190|ref|YP_004616331.1| - 0.00018 21.3 0.1 0.00024 20.9 0.1 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|336477190|ref|YP_004616331.1| - 0.07 13.6 0.1 0.095 13.2 0.1 1.2 1 0 0 1 1 1 0 eRF1 domain 3 YtxH PF12732.7 gi|336477190|ref|YP_004616331.1| - 0.07 13.7 3.3 2.9 8.5 0.1 2.3 2 0 0 2 2 2 0 YtxH-like protein UPF0014 PF03649.13 gi|336477192|ref|YP_004616333.1| - 7.2e-69 231.8 17.4 8e-69 231.7 17.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) ABC_tran PF00005.27 gi|336477193|ref|YP_004616334.1| - 7.5e-25 88.0 0.0 9.7e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336477193|ref|YP_004616334.1| - 1.6e-08 34.8 1.0 8.5e-05 22.5 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336477193|ref|YP_004616334.1| - 1.7e-06 27.7 1.4 3.7e-05 23.3 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336477193|ref|YP_004616334.1| - 0.00017 21.3 0.1 0.00031 20.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|336477193|ref|YP_004616334.1| - 0.00061 20.0 0.0 0.076 13.3 0.0 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|336477193|ref|YP_004616334.1| - 0.0015 18.4 0.1 0.0036 17.2 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_14 PF13173.6 gi|336477193|ref|YP_004616334.1| - 0.0018 18.3 0.3 0.041 13.9 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336477193|ref|YP_004616334.1| - 0.0031 17.9 0.0 0.0047 17.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain G-alpha PF00503.20 gi|336477193|ref|YP_004616334.1| - 0.012 14.8 2.0 0.015 14.5 0.2 1.7 1 1 1 2 2 2 0 G-protein alpha subunit DAP3 PF10236.9 gi|336477193|ref|YP_004616334.1| - 0.021 14.0 0.1 0.044 12.9 0.0 1.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 DUF815 PF05673.13 gi|336477193|ref|YP_004616334.1| - 0.061 12.5 0.0 0.098 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|336477193|ref|YP_004616334.1| - 0.11 12.9 0.7 0.37 11.2 0.1 2.3 2 1 0 2 2 2 0 RNA helicase AAA_7 PF12775.7 gi|336477193|ref|YP_004616334.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|336477193|ref|YP_004616334.1| - 0.17 11.8 0.3 0.34 10.8 0.3 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|336477193|ref|YP_004616334.1| - 1.6 9.2 4.1 25 5.4 4.1 2.3 1 1 0 1 1 1 0 AAA domain GHMP_kinases_N PF00288.26 gi|336477194|ref|YP_004616335.1| - 7.7e-10 38.9 2.5 1.5e-09 38.0 2.0 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|336477194|ref|YP_004616335.1| - 0.0013 19.1 0.0 0.0049 17.2 0.0 2.0 1 0 0 1 1 1 1 GHMP kinases C terminal DUF3576 PF12100.8 gi|336477194|ref|YP_004616335.1| - 0.067 13.3 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3576) RHH_3 PF12651.7 gi|336477194|ref|YP_004616335.1| - 0.29 11.1 1.5 2.6 8.1 0.0 2.6 3 0 0 3 3 3 0 Ribbon-helix-helix domain CM_2 PF01817.21 gi|336477195|ref|YP_004616336.1| - 1.4e-14 54.2 5.5 1.6e-14 54.0 5.5 1.0 1 0 0 1 1 1 1 Chorismate mutase type II HTH_24 PF13412.6 gi|336477195|ref|YP_004616336.1| - 0.03 13.9 0.3 0.22 11.1 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HrcA_DNA-bdg PF03444.15 gi|336477195|ref|YP_004616336.1| - 0.14 11.8 0.2 0.24 11.1 0.1 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AIRC PF00731.20 gi|336477196|ref|YP_004616337.1| - 1.3e-45 154.6 1.3 1.4e-45 154.5 1.3 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.6 gi|336477196|ref|YP_004616337.1| - 0.0097 15.6 0.1 0.012 15.3 0.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DXP_reductoisom PF02670.16 gi|336477196|ref|YP_004616337.1| - 0.074 13.8 0.0 0.087 13.5 0.0 1.3 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NikR_C PF08753.11 gi|336477197|ref|YP_004616338.1| - 2.1e-21 75.8 0.0 3.3e-21 75.2 0.0 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|336477197|ref|YP_004616338.1| - 9.1e-06 25.4 0.0 1.6e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family POR_N PF01855.19 gi|336477198|ref|YP_004616339.1| - 5.7e-55 186.6 0.4 1.2e-54 185.5 0.4 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|336477198|ref|YP_004616339.1| - 8.3e-37 126.9 0.0 1.7e-36 125.9 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|336477198|ref|YP_004616339.1| - 8.2e-07 28.8 0.1 1.4e-06 28.1 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|336477198|ref|YP_004616339.1| - 2.3e-06 27.9 0.0 8.5e-06 26.0 0.0 2.0 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|336477198|ref|YP_004616339.1| - 3.4e-05 23.7 0.0 7.1e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFO_beta_C PF12367.8 gi|336477199|ref|YP_004616340.1| - 3.5e-29 100.7 0.5 1.3e-28 98.9 0.4 1.9 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal TPP_enzyme_C PF02775.21 gi|336477199|ref|YP_004616340.1| - 8.3e-28 97.1 0.1 1.3e-27 96.5 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MTS PF05175.14 gi|336477200|ref|YP_004616341.1| - 3.5e-07 29.9 0.0 3.3e-06 26.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|336477200|ref|YP_004616341.1| - 0.00017 21.1 0.1 0.00028 20.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 gi|336477200|ref|YP_004616341.1| - 0.0009 19.0 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_23 PF13489.6 gi|336477200|ref|YP_004616341.1| - 0.0015 18.4 0.0 0.0025 17.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336477200|ref|YP_004616341.1| - 0.0018 18.1 0.0 0.003 17.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336477200|ref|YP_004616341.1| - 0.0051 17.5 0.0 0.015 15.9 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|336477200|ref|YP_004616341.1| - 0.012 15.4 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|336477200|ref|YP_004616341.1| - 0.04 14.7 0.0 0.092 13.5 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336477200|ref|YP_004616341.1| - 0.17 12.6 0.0 0.33 11.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|336477201|ref|YP_004616342.1| - 1.2e-56 191.8 0.0 1.5e-56 191.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|336477201|ref|YP_004616342.1| - 1.3e-06 29.1 0.0 2.2e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|336477201|ref|YP_004616342.1| - 0.00014 21.6 0.0 0.00022 21.0 0.0 1.4 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.12 gi|336477201|ref|YP_004616342.1| - 0.00064 20.3 0.0 0.0013 19.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|336477201|ref|YP_004616342.1| - 0.0025 17.4 0.0 0.0041 16.7 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_23 PF13489.6 gi|336477201|ref|YP_004616342.1| - 0.006 16.4 0.0 0.0062 16.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|336477201|ref|YP_004616342.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_12 PF08242.12 gi|336477201|ref|YP_004616342.1| - 0.026 15.3 0.0 0.061 14.1 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|336477201|ref|YP_004616342.1| - 0.054 13.0 0.0 0.089 12.3 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Microcin PF03526.13 gi|336477201|ref|YP_004616342.1| - 0.11 12.3 0.3 0.21 11.4 0.3 1.4 1 0 0 1 1 1 0 Colicin E1 (microcin) immunity protein MTS PF05175.14 gi|336477201|ref|YP_004616342.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF655 PF04919.12 gi|336477202|ref|YP_004616343.1| - 7.8e-70 234.5 0.4 8.8e-70 234.3 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|336477202|ref|YP_004616343.1| - 4.3e-05 23.7 0.0 9.7e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|336477202|ref|YP_004616343.1| - 0.00037 20.7 0.0 0.00058 20.1 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|336477203|ref|YP_004616344.1| - 1.3e-11 44.9 7.7 1.7e-11 44.5 7.7 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 Imm74 PF15603.6 gi|336477203|ref|YP_004616344.1| - 0.064 13.4 1.1 3.6 7.9 0.0 2.3 2 0 0 2 2 2 0 Immunity protein 74 DUF1389 PF07146.11 gi|336477203|ref|YP_004616344.1| - 0.075 12.3 0.6 0.097 11.9 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1389) Glycos_trans_3N PF02885.17 gi|336477203|ref|YP_004616344.1| - 0.2 11.5 5.0 6.3 6.7 1.4 2.8 1 1 2 3 3 3 0 Glycosyl transferase family, helical bundle domain FDX-ACB PF03147.14 gi|336477203|ref|YP_004616344.1| - 0.5 10.8 3.0 2.4 8.7 0.1 2.6 2 1 1 3 3 3 0 Ferredoxin-fold anticodon binding domain FumaraseC_C PF10415.9 gi|336477203|ref|YP_004616344.1| - 1.1 9.8 0.1 1.1 9.8 0.1 2.9 2 1 1 3 3 3 0 Fumarase C C-terminus Ribosomal_L21e PF01157.18 gi|336477204|ref|YP_004616345.1| - 8.2e-34 115.5 1.3 9e-34 115.4 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|336477205|ref|YP_004616346.1| - 4.7e-12 46.2 0.0 1.2e-11 44.9 0.0 1.7 1 0 0 1 1 1 1 THUMP domain SRR1 PF07985.12 gi|336477205|ref|YP_004616346.1| - 0.027 14.5 0.0 0.077 13.0 0.0 1.8 2 0 0 2 2 2 0 SRR1 Methyltrn_RNA_2 PF04013.12 gi|336477206|ref|YP_004616347.1| - 4.1e-57 193.1 0.0 4.6e-57 192.9 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Phage_integrase PF00589.22 gi|336477207|ref|YP_004616348.1| - 1.8e-26 93.0 0.4 3.4e-26 92.1 0.4 1.5 1 0 0 1 1 1 1 Phage integrase family DUF3435 PF11917.8 gi|336477207|ref|YP_004616348.1| - 4.8e-05 22.5 0.6 6.4e-05 22.1 0.1 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3435) DZR PF12773.7 gi|336477207|ref|YP_004616348.1| - 0.00025 21.0 0.2 0.00053 19.9 0.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon RIC1 PF07064.13 gi|336477207|ref|YP_004616348.1| - 0.0019 17.7 0.3 0.089 12.2 0.0 2.2 2 0 0 2 2 2 1 RIC1 CSRNP_N PF16019.5 gi|336477207|ref|YP_004616348.1| - 0.0061 16.5 0.3 0.0061 16.5 0.3 1.6 2 0 0 2 2 2 1 Cysteine/serine-rich nuclear protein N-terminus zinc_ribbon_2 PF13240.6 gi|336477207|ref|YP_004616348.1| - 0.016 14.9 4.8 0.032 14.0 4.8 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|336477207|ref|YP_004616348.1| - 0.037 14.8 0.4 0.089 13.6 0.4 1.6 1 0 0 1 1 1 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|336477207|ref|YP_004616348.1| - 3.3 7.2 7.1 0.59 9.6 3.6 1.6 2 0 0 2 2 2 0 zinc-ribbon domain TPR_2 PF07719.17 gi|336477210|ref|YP_004616351.1| - 4.2e-35 117.0 17.1 8.1e-06 25.6 0.0 10.2 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_1 PF00515.28 gi|336477210|ref|YP_004616351.1| - 8.2e-34 114.0 25.0 9.9e-08 31.5 0.1 10.3 10 0 0 10 10 10 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|336477210|ref|YP_004616351.1| - 2.2e-21 74.2 25.2 2.4e-05 24.2 0.1 9.8 10 0 0 10 10 9 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|336477210|ref|YP_004616351.1| - 3.6e-19 67.7 9.5 0.0034 17.6 0.0 7.6 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|336477210|ref|YP_004616351.1| - 3.9e-19 68.7 3.6 3e-05 24.2 0.8 6.3 6 1 0 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|336477210|ref|YP_004616351.1| - 1.7e-18 66.9 0.7 1.2e-05 25.7 0.0 6.5 6 1 0 7 7 7 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|336477210|ref|YP_004616351.1| - 2e-17 63.5 0.0 0.00019 22.0 0.3 6.7 6 1 0 6 6 6 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|336477210|ref|YP_004616351.1| - 5.8e-15 55.3 20.3 1e-05 25.6 0.1 5.3 2 2 3 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|336477210|ref|YP_004616351.1| - 1e-14 54.4 0.0 0.00098 19.2 0.1 5.5 2 1 4 6 6 6 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|336477210|ref|YP_004616351.1| - 2.4e-12 46.3 17.0 0.0073 16.0 0.8 8.3 4 2 4 8 8 8 3 TPR repeat TPR_14 PF13428.6 gi|336477210|ref|YP_004616351.1| - 2.5e-09 37.2 0.0 0.064 14.1 0.1 7.4 4 2 5 9 9 8 1 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|336477210|ref|YP_004616351.1| - 5.6e-07 28.9 2.8 0.019 14.4 0.0 4.9 5 0 0 5 5 5 2 SHNi-TPR TPR_7 PF13176.6 gi|336477210|ref|YP_004616351.1| - 1.6e-06 27.8 4.2 2.5 8.3 0.1 7.1 8 0 0 8 8 7 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|336477210|ref|YP_004616351.1| - 1.6e-05 25.3 8.4 2 9.2 0.1 7.9 9 0 0 9 9 9 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|336477210|ref|YP_004616351.1| - 3.9e-05 23.0 0.4 0.045 13.0 0.1 3.5 1 1 2 3 3 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|336477210|ref|YP_004616351.1| - 5.5e-05 23.1 9.4 0.46 10.6 0.1 6.4 6 1 1 7 7 6 1 Fis1 C-terminal tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|336477210|ref|YP_004616351.1| - 6.2e-05 23.0 8.6 0.0019 18.2 1.7 4.9 2 1 3 5 5 5 3 Putative TPR-like repeat TPR_10 PF13374.6 gi|336477210|ref|YP_004616351.1| - 0.00013 21.7 1.3 43 4.2 0.0 6.1 7 0 0 7 7 6 0 Tetratricopeptide repeat Hfq PF17209.3 gi|336477210|ref|YP_004616351.1| - 0.00025 20.6 0.2 0.00077 19.1 0.2 1.8 1 0 0 1 1 1 1 Hfq protein NARP1 PF12569.8 gi|336477210|ref|YP_004616351.1| - 0.005 15.8 14.9 0.08 11.8 0.8 3.2 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 TPR_3 PF07720.12 gi|336477210|ref|YP_004616351.1| - 0.009 16.0 12.5 2 8.5 0.1 5.1 5 0 0 5 5 5 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|336477210|ref|YP_004616351.1| - 0.0092 16.1 1.3 39 4.3 0.0 3.5 3 1 1 4 4 3 0 Domain of Unknown Function (DUF3856) GatB_N PF02934.15 gi|336477210|ref|YP_004616351.1| - 0.036 13.4 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 GatB/GatE catalytic domain DUF3479 PF11965.8 gi|336477210|ref|YP_004616351.1| - 0.069 13.3 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) PPR PF01535.20 gi|336477210|ref|YP_004616351.1| - 0.13 12.6 1.1 16 6.0 0.0 4.2 4 0 0 4 4 3 0 PPR repeat LMWPc PF01451.21 gi|336477211|ref|YP_004616352.1| - 2.9e-07 31.0 0.0 0.00039 20.8 0.0 2.1 1 1 1 2 2 2 2 Low molecular weight phosphotyrosine protein phosphatase NADH-G_4Fe-4S_3 PF10588.9 gi|336477212|ref|YP_004616353.1| - 1.9 8.1 5.1 28 4.4 1.6 2.6 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IF2_N PF04760.15 gi|336477213|ref|YP_004616354.1| - 0.049 13.5 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region Mnd1 PF03962.15 gi|336477213|ref|YP_004616354.1| - 0.054 13.8 0.1 0.48 10.8 0.0 2.7 3 0 0 3 3 3 0 Mnd1 HTH domain AAA PF00004.29 gi|336477214|ref|YP_004616355.1| - 1.7e-45 154.7 0.4 6.1e-45 152.9 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336477214|ref|YP_004616355.1| - 6.6e-12 45.0 0.2 2.4e-11 43.2 0.1 2.0 2 0 0 2 2 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|336477214|ref|YP_004616355.1| - 4.1e-08 33.5 0.0 9.8e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.6 gi|336477214|ref|YP_004616355.1| - 6.3e-06 26.3 0.7 2.9e-05 24.1 0.0 2.3 2 1 1 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|336477214|ref|YP_004616355.1| - 2.7e-05 24.4 1.6 0.001 19.3 0.2 2.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336477214|ref|YP_004616355.1| - 4.2e-05 24.0 0.0 0.00022 21.6 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|336477214|ref|YP_004616355.1| - 4.3e-05 23.3 0.0 8.1e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|336477214|ref|YP_004616355.1| - 0.00012 22.1 0.1 0.00055 20.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|336477214|ref|YP_004616355.1| - 0.00055 19.2 0.0 0.00096 18.5 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain Viral_helicase1 PF01443.18 gi|336477214|ref|YP_004616355.1| - 0.0007 19.4 0.9 0.0013 18.5 0.0 1.8 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.27 gi|336477214|ref|YP_004616355.1| - 0.0011 19.5 0.6 0.0028 18.2 0.0 1.8 2 0 0 2 2 2 1 ABC transporter ATPase_2 PF01637.18 gi|336477214|ref|YP_004616355.1| - 0.0012 18.9 5.2 0.39 10.6 0.0 3.0 2 2 2 4 4 4 2 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|336477214|ref|YP_004616355.1| - 0.0013 19.0 0.0 0.0025 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|336477214|ref|YP_004616355.1| - 0.0013 18.3 0.0 0.0038 16.8 0.0 1.7 1 1 0 1 1 1 1 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|336477214|ref|YP_004616355.1| - 0.0014 19.0 0.0 0.0039 17.6 0.0 1.9 1 0 0 1 1 1 1 RNA helicase DUF815 PF05673.13 gi|336477214|ref|YP_004616355.1| - 0.0019 17.4 0.0 0.0033 16.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|336477214|ref|YP_004616355.1| - 0.0024 18.4 0.1 0.0087 16.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|336477214|ref|YP_004616355.1| - 0.0054 16.7 0.2 0.015 15.2 0.1 1.8 1 1 0 1 1 1 1 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|336477214|ref|YP_004616355.1| - 0.0055 16.1 0.1 0.012 15.0 0.1 1.6 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI ResIII PF04851.15 gi|336477214|ref|YP_004616355.1| - 0.0061 16.6 4.4 0.3 11.1 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit MIT PF04212.18 gi|336477214|ref|YP_004616355.1| - 0.0073 16.3 2.0 0.016 15.3 2.0 1.6 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain Sigma54_activat PF00158.26 gi|336477214|ref|YP_004616355.1| - 0.0096 15.6 0.1 0.17 11.6 0.1 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain TsaE PF02367.17 gi|336477214|ref|YP_004616355.1| - 0.011 15.7 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|336477214|ref|YP_004616355.1| - 0.015 14.6 1.1 0.14 11.5 0.1 2.3 1 1 1 2 2 2 0 KaiC IstB_IS21 PF01695.17 gi|336477214|ref|YP_004616355.1| - 0.016 15.0 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|336477214|ref|YP_004616355.1| - 0.016 15.1 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_3 PF07726.11 gi|336477214|ref|YP_004616355.1| - 0.023 14.5 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SKI PF01202.22 gi|336477214|ref|YP_004616355.1| - 0.033 14.3 1.3 1.3 9.1 0.1 2.9 3 0 0 3 3 3 0 Shikimate kinase AAA_24 PF13479.6 gi|336477214|ref|YP_004616355.1| - 0.044 13.5 0.0 0.081 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|336477214|ref|YP_004616355.1| - 0.067 12.8 0.2 0.3 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|336477214|ref|YP_004616355.1| - 0.068 13.6 0.0 0.17 12.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain Cytidylate_kin2 PF13189.6 gi|336477214|ref|YP_004616355.1| - 0.11 12.7 1.0 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 Cytidylate kinase-like family Snf7 PF03357.21 gi|336477215|ref|YP_004616356.1| - 0.00053 19.6 20.0 0.0012 18.5 20.0 1.6 1 1 0 1 1 1 1 Snf7 Stathmin PF00836.19 gi|336477215|ref|YP_004616356.1| - 0.0062 16.5 4.4 0.0062 16.5 4.4 2.3 2 1 0 2 2 2 1 Stathmin family PRKG1_interact PF15898.5 gi|336477215|ref|YP_004616356.1| - 0.0098 16.8 5.7 0.0098 16.8 5.7 2.2 2 0 0 2 2 2 1 cGMP-dependent protein kinase interacting domain Trns_repr_metal PF02583.17 gi|336477215|ref|YP_004616356.1| - 0.067 13.6 1.5 0.13 12.6 0.2 2.1 2 0 0 2 2 2 0 Metal-sensitive transcriptional repressor GreA_GreB_N PF03449.15 gi|336477215|ref|YP_004616356.1| - 0.59 10.3 8.2 0.2 11.8 3.1 2.4 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal RHH_1 PF01402.21 gi|336477216|ref|YP_004616357.1| - 8.4e-05 22.4 0.1 0.00013 21.8 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Tfb2 PF03849.14 gi|336477216|ref|YP_004616357.1| - 0.054 12.5 0.0 0.057 12.4 0.0 1.1 1 0 0 1 1 1 0 Transcription factor Tfb2 Band_7 PF01145.25 gi|336477217|ref|YP_004616358.1| - 2.1e-06 27.9 0.3 1.2e-05 25.4 0.0 2.2 2 0 0 2 2 2 1 SPFH domain / Band 7 family DZR PF12773.7 gi|336477217|ref|YP_004616358.1| - 5.4e-05 23.1 0.3 8.8e-05 22.4 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|336477217|ref|YP_004616358.1| - 7.3e-05 22.4 1.2 0.00013 21.6 1.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|336477217|ref|YP_004616358.1| - 0.00012 22.7 0.7 0.00027 21.6 0.7 1.6 1 0 0 1 1 1 1 zinc-ribbon family UPF0547 PF10571.9 gi|336477217|ref|YP_004616358.1| - 0.00041 20.4 1.2 0.0007 19.6 1.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|336477217|ref|YP_004616358.1| - 0.0031 16.9 1.0 0.0058 16.0 1.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Lig_C PF18330.1 gi|336477217|ref|YP_004616358.1| - 0.0075 16.3 0.8 0.02 14.9 0.8 1.7 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region Peptidase_M90 PF06167.12 gi|336477217|ref|YP_004616358.1| - 0.024 14.3 0.2 0.04 13.5 0.2 1.3 1 0 0 1 1 1 0 Glucose-regulated metallo-peptidase M90 DUF2116 PF09889.9 gi|336477217|ref|YP_004616358.1| - 0.22 11.5 0.8 0.48 10.4 0.8 1.6 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-TRM13_CCCH PF11722.8 gi|336477217|ref|YP_004616358.1| - 0.23 11.2 1.0 0.4 10.5 1.0 1.4 1 0 0 1 1 1 0 CCCH zinc finger in TRM13 protein OpuAC PF04069.12 gi|336477218|ref|YP_004616359.1| - 3.9e-65 220.0 2.2 5.6e-65 219.5 2.2 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system D5_N PF08706.11 gi|336477218|ref|YP_004616359.1| - 0.056 13.7 0.0 0.18 12.1 0.0 1.8 1 0 0 1 1 1 0 D5 N terminal like SBP_bac_5 PF00496.22 gi|336477218|ref|YP_004616359.1| - 0.076 12.0 0.1 0.12 11.3 0.1 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle EMP24_GP25L PF01105.24 gi|336477219|ref|YP_004616360.1| - 1.4e-05 25.2 0.8 1.4e-05 25.2 0.8 3.1 2 1 0 2 2 2 1 emp24/gp25L/p24 family/GOLD DUF3139 PF11337.8 gi|336477219|ref|YP_004616360.1| - 2.6 8.8 10.2 0.22 12.2 0.6 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF3139) Ig_4 PF16680.5 gi|336477220|ref|YP_004616361.1| - 0.041 14.1 1.9 0.041 14.1 1.9 2.4 1 1 0 2 2 2 0 T-cell surface glycoprotein CD3 delta chain ASPRs PF17641.2 gi|336477220|ref|YP_004616361.1| - 0.14 12.5 2.8 4.9 7.5 0.1 2.2 2 0 0 2 2 2 0 Ancylostoma-associated secreted protein related DUF4816 PF16086.5 gi|336477220|ref|YP_004616361.1| - 0.25 11.3 6.8 1.1 9.3 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4816) NYN PF01936.18 gi|336477221|ref|YP_004616362.1| - 1.8e-21 77.1 0.2 2.2e-21 76.9 0.2 1.0 1 0 0 1 1 1 1 NYN domain PIN7 PF18475.1 gi|336477221|ref|YP_004616362.1| - 0.036 14.7 1.5 0.46 11.1 0.6 2.5 2 1 0 2 2 2 0 PIN domain ResIII PF04851.15 gi|336477223|ref|YP_004616364.1| - 1.3e-13 51.3 0.1 1.3e-13 51.3 0.1 3.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|336477223|ref|YP_004616364.1| - 2.6e-12 47.0 0.1 1.9e-11 44.3 0.1 2.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|336477223|ref|YP_004616364.1| - 6.8e-11 41.8 0.5 2e-10 40.3 0.1 2.0 2 0 0 2 2 2 1 ERCC3/RAD25/XPB C-terminal helicase DEAD PF00270.29 gi|336477223|ref|YP_004616364.1| - 3.2e-05 23.8 0.0 0.00011 22.0 0.0 2.0 1 0 0 1 1 1 1 DEAD/DEAH box helicase TPR_12 PF13424.6 gi|336477223|ref|YP_004616364.1| - 0.0002 21.6 3.9 0.018 15.3 0.4 3.4 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|336477223|ref|YP_004616364.1| - 0.0011 18.9 17.9 0.23 11.7 0.8 6.4 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|336477223|ref|YP_004616364.1| - 0.0012 19.1 0.0 0.008 16.5 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat SNAP PF14938.6 gi|336477223|ref|YP_004616364.1| - 0.0043 16.5 9.7 0.039 13.4 9.7 2.3 1 1 0 1 1 1 1 Soluble NSF attachment protein, SNAP TPR_14 PF13428.6 gi|336477223|ref|YP_004616364.1| - 0.0061 17.3 0.0 6 8.0 0.0 3.9 4 0 0 4 4 3 1 Tetratricopeptide repeat RQC PF09382.10 gi|336477223|ref|YP_004616364.1| - 0.0073 16.1 0.4 0.056 13.2 0.0 2.7 3 0 0 3 3 3 1 RQC domain TPR_17 PF13431.6 gi|336477223|ref|YP_004616364.1| - 0.013 15.8 8.6 0.54 10.7 0.0 4.6 4 1 1 5 5 4 0 Tetratricopeptide repeat Helicase_RecD PF05127.14 gi|336477223|ref|YP_004616364.1| - 0.085 12.7 0.1 0.35 10.7 0.1 2.1 1 0 0 1 1 1 0 Helicase TPR_19 PF14559.6 gi|336477223|ref|YP_004616364.1| - 0.1 13.1 1.5 1 9.9 0.1 3.3 3 0 0 3 3 2 0 Tetratricopeptide repeat AAA_22 PF13401.6 gi|336477223|ref|YP_004616364.1| - 0.13 12.5 0.7 0.7 10.2 0.0 2.6 4 0 0 4 4 1 0 AAA domain TPR_1 PF00515.28 gi|336477223|ref|YP_004616364.1| - 0.28 11.1 24.9 0.093 12.6 0.6 6.2 7 1 0 7 7 6 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|336477223|ref|YP_004616364.1| - 5.6 7.4 19.9 3 8.3 1.5 6.2 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|336477223|ref|YP_004616364.1| - 8.9 7.2 6.2 8.4 7.3 0.3 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat DEAD PF00270.29 gi|336477224|ref|YP_004616365.1| - 1.4e-14 54.2 0.0 2.5e-11 43.6 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|336477224|ref|YP_004616365.1| - 6.7e-06 26.4 3.1 2.5e-05 24.6 0.0 3.4 2 1 2 4 4 4 1 Helicase conserved C-terminal domain TetR_C_13 PF16925.5 gi|336477224|ref|YP_004616365.1| - 0.03 14.2 0.1 0.065 13.2 0.1 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF1998 PF09369.10 gi|336477224|ref|YP_004616365.1| - 0.036 14.8 0.0 0.12 13.1 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1998) SspH PF08141.12 gi|336477224|ref|YP_004616365.1| - 0.5 10.5 2.1 8.7 6.6 0.2 2.7 2 0 0 2 2 2 0 Small acid-soluble spore protein H family zinc-ribbon_6 PF10005.9 gi|336477224|ref|YP_004616365.1| - 0.55 10.9 4.2 0.5 11.1 1.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain UvrD-helicase PF00580.21 gi|336477224|ref|YP_004616365.1| - 0.75 9.2 9.6 1.3 8.5 1.6 3.2 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain zf-RING_7 PF02591.15 gi|336477224|ref|YP_004616365.1| - 9.2 6.5 8.8 2.9 8.2 0.0 3.6 4 0 0 4 4 4 0 C4-type zinc ribbon domain HypA PF01155.19 gi|336477224|ref|YP_004616365.1| - 9.7 6.3 11.2 13 5.9 3.4 3.1 3 0 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DDE_Tnp_1 PF01609.21 gi|336477226|ref|YP_004616367.1| - 3e-15 56.5 2.0 3.7e-15 56.1 2.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|336477226|ref|YP_004616367.1| - 0.015 15.3 0.6 0.034 14.1 0.6 1.6 1 1 0 1 1 1 0 Transposase DDE domain DUF772 PF05598.11 gi|336477226|ref|YP_004616367.1| - 0.023 14.7 0.0 0.062 13.3 0.0 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.6 gi|336477226|ref|YP_004616367.1| - 0.028 14.8 0.1 0.095 13.1 0.1 1.9 1 0 0 1 1 1 0 Transposase DDE domain HD_4 PF13328.6 gi|336477227|ref|YP_004616368.1| - 9.3e-06 25.5 0.0 1.3e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 HD domain HD PF01966.22 gi|336477227|ref|YP_004616368.1| - 0.11 12.8 0.1 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 HD domain PglZ PF08665.12 gi|336477229|ref|YP_004616370.1| - 6.7e-36 124.0 0.0 1.5e-35 122.9 0.0 1.6 1 0 0 1 1 1 1 PglZ domain Phosphodiest PF01663.22 gi|336477229|ref|YP_004616370.1| - 0.13 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase Helicase_C PF00271.31 gi|336477230|ref|YP_004616371.1| - 3e-22 79.1 0.0 6.4e-22 78.0 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|336477230|ref|YP_004616371.1| - 2e-15 56.4 0.0 4.2e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|336477230|ref|YP_004616371.1| - 6.4e-10 39.3 0.0 1.8e-09 37.9 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PSK_trans_fac PF07704.11 gi|336477230|ref|YP_004616371.1| - 0.037 14.8 1.7 0.17 12.6 1.7 2.3 1 0 0 1 1 1 0 Rv0623-like transcription factor UvrD-helicase PF00580.21 gi|336477231|ref|YP_004616372.1| - 1.1e-59 202.5 6.5 5e-30 105.1 2.2 2.6 2 1 1 3 3 3 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|336477231|ref|YP_004616372.1| - 1.5e-34 119.9 1.1 4.7e-23 82.1 0.0 2.4 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|336477231|ref|YP_004616372.1| - 3.8e-27 95.4 0.0 7.6e-27 94.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 gi|336477231|ref|YP_004616372.1| - 3.7e-08 33.0 0.0 1.6e-07 31.0 0.0 2.0 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|336477231|ref|YP_004616372.1| - 8.4e-08 32.2 0.0 3.1e-06 27.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|336477231|ref|YP_004616372.1| - 1.3e-07 31.6 0.0 0.00089 19.1 0.0 3.5 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.6 gi|336477231|ref|YP_004616372.1| - 0.0003 20.4 0.3 0.28 10.8 0.0 2.9 3 0 0 3 3 3 2 AAA domain DEAD PF00270.29 gi|336477231|ref|YP_004616372.1| - 0.0047 16.7 0.0 0.0092 15.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|336477231|ref|YP_004616372.1| - 0.041 14.3 0.0 0.25 11.7 0.0 2.3 2 1 0 2 2 2 0 AAA ATPase domain Gelsolin PF00626.22 gi|336477231|ref|YP_004616372.1| - 0.055 13.4 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 Gelsolin repeat AAA_22 PF13401.6 gi|336477231|ref|YP_004616372.1| - 0.11 12.7 0.3 2.2 8.6 0.0 2.5 1 1 1 2 2 2 0 AAA domain DUF2813 PF11398.8 gi|336477232|ref|YP_004616373.1| - 3.1e-55 188.0 0.2 3.9e-55 187.6 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) AAA_15 PF13175.6 gi|336477232|ref|YP_004616373.1| - 2e-34 120.0 6.4 1.6e-33 117.0 6.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|336477232|ref|YP_004616373.1| - 5.4e-21 75.7 2.2 1e-19 71.5 2.2 2.3 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|336477232|ref|YP_004616373.1| - 1.8e-12 48.2 7.3 4.2e-12 47.0 7.3 1.6 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|336477232|ref|YP_004616373.1| - 2.5e-07 30.4 0.7 5.1e-07 29.4 0.7 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336477232|ref|YP_004616373.1| - 0.00055 19.6 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|336477232|ref|YP_004616373.1| - 0.034 13.7 0.0 0.081 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Toprim_2 PF13155.6 gi|336477232|ref|YP_004616373.1| - 0.15 12.5 0.1 1.1 9.8 0.2 2.2 1 1 1 2 2 2 0 Toprim-like AAA_30 PF13604.6 gi|336477233|ref|YP_004616374.1| - 2.3e-26 92.7 0.0 4.3e-26 91.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|336477233|ref|YP_004616374.1| - 1e-22 81.0 0.0 2.6e-22 79.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 gi|336477233|ref|YP_004616374.1| - 1.8e-12 46.9 0.0 3.5e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|336477233|ref|YP_004616374.1| - 4.5e-12 46.2 0.0 0.0002 21.2 0.0 3.1 2 1 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|336477233|ref|YP_004616374.1| - 2.3e-10 40.7 0.1 0.00026 20.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain Helicase_RecD PF05127.14 gi|336477233|ref|YP_004616374.1| - 5.8e-06 26.3 0.0 1.2e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Helicase DUF2075 PF09848.9 gi|336477233|ref|YP_004616374.1| - 6.2e-05 22.4 0.0 0.076 12.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) SH3_13 PF18335.1 gi|336477233|ref|YP_004616374.1| - 0.00028 20.6 0.2 0.00058 19.6 0.2 1.6 1 0 0 1 1 1 1 ATP-dependent RecD-like DNA helicase SH3 domain AAA_22 PF13401.6 gi|336477233|ref|YP_004616374.1| - 0.00046 20.5 0.1 0.0062 16.8 0.1 2.8 2 1 0 2 2 2 1 AAA domain PIF1 PF05970.14 gi|336477233|ref|YP_004616374.1| - 0.0019 17.5 0.0 0.006 15.8 0.0 1.7 1 1 0 1 1 1 1 PIF1-like helicase UvrD_C PF13361.6 gi|336477233|ref|YP_004616374.1| - 0.0041 16.5 0.0 0.0093 15.4 0.0 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain HHH_4 PF14490.6 gi|336477233|ref|YP_004616374.1| - 0.014 15.4 0.0 0.059 13.3 0.0 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix containing domain AAA_16 PF13191.6 gi|336477233|ref|YP_004616374.1| - 0.066 13.6 0.0 0.24 11.8 0.0 2.0 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|336477233|ref|YP_004616374.1| - 0.093 13.2 0.0 0.36 11.3 0.0 2.0 1 0 0 1 1 1 0 ABC transporter RsgA_GTPase PF03193.16 gi|336477233|ref|YP_004616374.1| - 0.1 12.5 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase PhoH PF02562.16 gi|336477233|ref|YP_004616374.1| - 0.16 11.4 0.0 3.9 6.9 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein Abi_HHR PF07815.14 gi|336477233|ref|YP_004616374.1| - 0.16 12.1 0.0 0.57 10.4 0.0 1.9 1 0 0 1 1 1 0 Abl-interactor HHR N6_N4_Mtase PF01555.18 gi|336477234|ref|YP_004616375.1| - 3.9e-15 56.2 1.3 4.5e-10 39.6 0.0 2.8 3 0 0 3 3 3 2 DNA methylase Cons_hypoth95 PF03602.15 gi|336477234|ref|YP_004616375.1| - 0.00021 21.0 0.0 0.0012 18.6 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical protein 95 PhnA_Zn_Ribbon PF08274.12 gi|336477234|ref|YP_004616375.1| - 0.054 13.5 1.6 0.21 11.6 0.2 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-Di19 PF05605.12 gi|336477234|ref|YP_004616375.1| - 0.093 13.0 0.4 1.9 8.9 0.1 2.4 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Rubredoxin PF00301.20 gi|336477234|ref|YP_004616375.1| - 4.7 7.3 7.7 1.4 9.0 1.4 2.9 3 0 0 3 3 3 0 Rubredoxin AAA_22 PF13401.6 gi|336477235|ref|YP_004616376.1| - 4.7e-05 23.7 1.4 0.0035 17.6 0.0 3.8 4 0 0 4 4 4 1 AAA domain DUF5344 PF17279.2 gi|336477235|ref|YP_004616376.1| - 0.0076 16.8 10.1 0.048 14.2 0.6 4.5 3 0 0 3 3 3 1 Family of unknown function (DUF5344) AAA_16 PF13191.6 gi|336477235|ref|YP_004616376.1| - 0.037 14.4 0.0 0.037 14.4 0.0 3.7 4 1 0 4 4 4 0 AAA ATPase domain zf-C4H2 PF10146.9 gi|336477235|ref|YP_004616376.1| - 0.15 12.4 0.2 0.42 10.9 0.2 1.8 1 0 0 1 1 1 0 Zinc finger-containing protein AAA PF00004.29 gi|336477236|ref|YP_004616377.1| - 8.2e-09 36.0 0.0 1.1e-08 35.6 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|336477236|ref|YP_004616377.1| - 0.00011 22.7 0.0 0.0002 21.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|336477236|ref|YP_004616377.1| - 0.00016 21.0 0.0 0.00028 20.2 0.0 1.4 1 1 0 1 1 1 1 Zeta toxin AAA_7 PF12775.7 gi|336477236|ref|YP_004616377.1| - 0.00022 20.8 0.0 0.00034 20.2 0.0 1.4 1 1 0 1 1 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|336477236|ref|YP_004616377.1| - 0.00026 21.3 0.1 0.0006 20.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|336477236|ref|YP_004616377.1| - 0.0015 19.1 0.1 0.0021 18.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|336477236|ref|YP_004616377.1| - 0.0016 18.6 0.0 0.0018 18.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|336477236|ref|YP_004616377.1| - 0.0016 18.4 0.0 0.0032 17.4 0.0 1.6 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|336477236|ref|YP_004616377.1| - 0.0053 16.8 0.2 0.0068 16.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|336477236|ref|YP_004616377.1| - 0.0061 15.8 0.3 0.0092 15.2 0.3 1.5 1 1 0 1 1 1 1 NB-ARC domain NACHT PF05729.12 gi|336477236|ref|YP_004616377.1| - 0.0073 16.2 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 NACHT domain TIP49 PF06068.13 gi|336477236|ref|YP_004616377.1| - 0.0081 15.4 0.0 0.0092 15.2 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain DUF815 PF05673.13 gi|336477236|ref|YP_004616377.1| - 0.012 14.8 0.2 0.017 14.3 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF815) Rad17 PF03215.15 gi|336477236|ref|YP_004616377.1| - 0.025 14.5 0.7 0.08 12.9 0.1 1.7 1 1 1 2 2 2 0 Rad17 P-loop domain TniB PF05621.11 gi|336477236|ref|YP_004616377.1| - 0.032 13.6 0.0 0.059 12.8 0.0 1.4 1 1 0 1 1 1 0 Bacterial TniB protein SRP54 PF00448.22 gi|336477236|ref|YP_004616377.1| - 0.036 13.7 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATPase_2 PF01637.18 gi|336477236|ref|YP_004616377.1| - 0.041 13.8 0.3 0.051 13.5 0.3 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea IPT PF01745.16 gi|336477236|ref|YP_004616377.1| - 0.073 12.4 0.3 0.66 9.3 0.0 2.0 1 1 1 2 2 2 0 Isopentenyl transferase AAA_5 PF07728.14 gi|336477236|ref|YP_004616377.1| - 0.081 12.9 0.0 0.12 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) SMC_N PF02463.19 gi|336477236|ref|YP_004616377.1| - 0.081 12.3 0.0 0.095 12.1 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain ATP_bind_2 PF03668.15 gi|336477236|ref|YP_004616377.1| - 0.1 11.9 0.1 0.12 11.6 0.1 1.1 1 0 0 1 1 1 0 P-loop ATPase protein family RuvB_N PF05496.12 gi|336477236|ref|YP_004616377.1| - 0.11 12.2 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_17 PF13207.6 gi|336477236|ref|YP_004616377.1| - 0.14 12.6 0.0 0.21 12.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|336477236|ref|YP_004616377.1| - 0.28 11.7 3.2 0.97 9.9 0.1 2.3 2 1 0 2 2 2 0 AAA domain N6_N4_Mtase PF01555.18 gi|336477237|ref|YP_004616378.1| - 2.1e-10 40.7 0.0 7.4e-07 29.1 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_23 PF13489.6 gi|336477237|ref|YP_004616378.1| - 0.022 14.6 0.0 0.082 12.7 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|336477237|ref|YP_004616378.1| - 0.029 14.0 0.0 2 8.0 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|336477237|ref|YP_004616378.1| - 0.055 13.1 0.1 2 8.0 0.0 2.2 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|336477237|ref|YP_004616378.1| - 0.1 13.3 0.0 0.24 12.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336477237|ref|YP_004616378.1| - 0.12 12.2 0.0 0.33 10.7 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain DUF87 PF01935.17 gi|336477238|ref|YP_004616379.1| - 8.2e-25 88.2 0.1 2.8e-23 83.2 0.0 2.1 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|336477238|ref|YP_004616379.1| - 0.039 12.9 0.0 0.46 9.3 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain Vip3A_N PF12495.8 gi|336477238|ref|YP_004616379.1| - 0.04 13.8 0.3 0.11 12.4 0.3 1.7 1 0 0 1 1 1 0 Vegetative insecticide protein 3A N terminal AbrB PF05145.12 gi|336477240|ref|YP_004616381.1| - 0.031 13.2 1.0 0.033 13.1 1.0 1.0 1 0 0 1 1 1 0 Transition state regulatory protein AbrB AHSA1 PF08327.11 gi|336477241|ref|YP_004616382.1| - 1.9e-10 41.0 0.2 2.6e-10 40.6 0.2 1.2 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 gi|336477241|ref|YP_004616382.1| - 0.00035 20.9 0.0 0.00043 20.6 0.0 1.5 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2154 PF09922.9 gi|336477243|ref|YP_004616384.1| - 2.6e-11 43.4 0.5 4.1e-11 42.8 0.5 1.3 1 0 0 1 1 1 1 Cell wall-active antibiotics response 4TMS YvqF zf_UBZ PF18439.1 gi|336477244|ref|YP_004616385.1| - 0.0043 16.6 0.8 1.4 8.6 0.1 2.3 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zf-C4_Topoisom PF01396.19 gi|336477244|ref|YP_004616385.1| - 0.015 15.1 0.9 2.3 8.1 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Tmpp129 PF10272.9 gi|336477244|ref|YP_004616385.1| - 0.018 14.4 0.6 0.021 14.1 0.6 1.0 1 0 0 1 1 1 0 Putative transmembrane protein precursor IBR PF01485.21 gi|336477244|ref|YP_004616385.1| - 0.023 14.9 1.0 0.031 14.5 1.0 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain LIM PF00412.22 gi|336477244|ref|YP_004616385.1| - 0.027 14.7 0.6 0.04 14.1 0.6 1.5 1 1 0 1 1 1 0 LIM domain DZR PF12773.7 gi|336477244|ref|YP_004616385.1| - 0.032 14.3 0.7 0.06 13.4 0.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|336477244|ref|YP_004616385.1| - 0.052 13.5 1.2 0.14 12.2 1.3 1.6 1 1 0 1 1 1 0 zinc-ribbons zf_C2H2_10 PF18414.1 gi|336477244|ref|YP_004616385.1| - 0.057 13.0 1.2 1.4 8.5 0.1 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger DiS_P_DiS PF06750.13 gi|336477244|ref|YP_004616385.1| - 0.069 13.3 2.1 1.3 9.2 2.1 2.0 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain SelR PF01641.18 gi|336477244|ref|YP_004616385.1| - 0.093 12.8 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 SelR domain Sgf11 PF08209.11 gi|336477244|ref|YP_004616385.1| - 0.12 11.9 1.7 0.86 9.2 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn_Tnp_IS1595 PF12760.7 gi|336477244|ref|YP_004616385.1| - 0.13 12.3 0.3 0.13 12.3 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|336477244|ref|YP_004616385.1| - 0.14 12.5 3.0 7.2 7.0 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon zf-RING_4 PF14570.6 gi|336477244|ref|YP_004616385.1| - 0.37 10.6 4.9 2.3 8.1 4.9 2.0 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain DUF3797 PF12677.7 gi|336477244|ref|YP_004616385.1| - 1.4 8.9 6.7 3 7.8 0.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Mis14 PF08641.12 gi|336477245|ref|YP_004616386.1| - 1.1e-05 25.7 0.0 1.3e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 Kinetochore protein Mis14 like PhaP_Bmeg PF09602.10 gi|336477245|ref|YP_004616386.1| - 0.014 15.4 0.2 0.014 15.3 0.2 1.1 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) Enoyl_reductase PF12241.8 gi|336477245|ref|YP_004616386.1| - 0.046 13.1 0.0 0.048 13.0 0.0 1.1 1 0 0 1 1 1 0 Trans-2-enoyl-CoA reductase catalytic region PAS_9 PF13426.7 gi|336477247|ref|YP_004616388.1| - 1.3e-30 105.7 5.7 3.5e-11 43.3 0.1 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|336477247|ref|YP_004616388.1| - 1.7e-28 98.9 0.3 2.7e-10 40.3 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|336477247|ref|YP_004616388.1| - 2.7e-27 94.9 0.2 1.7e-19 69.9 0.1 3.8 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.12 gi|336477247|ref|YP_004616388.1| - 6.1e-25 87.1 7.6 6.1e-25 87.1 7.6 2.3 2 0 0 2 2 1 1 Histidine kinase GAF_2 PF13185.6 gi|336477247|ref|YP_004616388.1| - 6.7e-25 88.0 0.0 2.3e-23 83.0 0.0 2.4 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.10 gi|336477247|ref|YP_004616388.1| - 3.1e-17 62.8 0.0 4.3e-06 26.9 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|336477247|ref|YP_004616388.1| - 1.7e-09 37.5 0.0 0.016 15.3 0.0 3.8 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|336477247|ref|YP_004616388.1| - 1.3e-08 35.4 0.1 4.4e-08 33.6 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|336477247|ref|YP_004616388.1| - 1.3e-08 35.4 1.3 2.6e-08 34.5 0.4 2.0 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|336477247|ref|YP_004616388.1| - 0.0022 17.9 0.0 0.0051 16.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Casc1_N PF15927.5 gi|336477247|ref|YP_004616388.1| - 0.031 14.0 0.8 0.1 12.3 0.8 1.9 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 N-terminus HATPase_c_3 PF13589.6 gi|336477247|ref|YP_004616388.1| - 0.04 13.7 0.1 0.15 11.9 0.1 2.0 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sensor_TM1 PF13755.6 gi|336477247|ref|YP_004616388.1| - 0.051 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain MnmE_helical PF12631.7 gi|336477247|ref|YP_004616388.1| - 0.33 11.1 4.6 0.66 10.1 0.8 2.5 2 0 0 2 2 2 0 MnmE helical domain RGS_DHEX PF18148.1 gi|336477247|ref|YP_004616388.1| - 0.55 10.4 8.0 2.3 8.4 0.4 3.9 4 0 0 4 4 4 0 Regulator of G-protein signalling DHEX domain FAD_binding_4 PF01565.23 gi|336477248|ref|YP_004616389.1| - 4.6e-32 110.7 3.2 6.7e-32 110.1 3.2 1.3 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|336477248|ref|YP_004616389.1| - 4.4e-09 36.3 0.1 7.8e-09 35.5 0.1 1.4 1 0 0 1 1 1 1 Berberine and berberine like DUF1724 PF08350.10 gi|336477250|ref|YP_004616391.1| - 7.7e-19 67.6 0.1 2.1e-18 66.2 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) DUF1043 PF06295.12 gi|336477250|ref|YP_004616391.1| - 0.0013 18.8 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1043) AI-2E_transport PF01594.16 gi|336477251|ref|YP_004616392.1| - 1.7e-40 139.2 46.9 2.2e-40 138.8 46.9 1.0 1 0 0 1 1 1 1 AI-2E family transporter DUF4096 PF13340.6 gi|336477252|ref|YP_004616393.1| - 4e-19 68.6 0.0 4.4e-19 68.5 0.0 1.0 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) PKD PF00801.20 gi|336477253|ref|YP_004616394.1| - 1.2e-14 53.9 8.4 4.1e-14 52.2 4.4 2.3 2 0 0 2 2 2 1 PKD domain Cupredoxin_1 PF13473.6 gi|336477253|ref|YP_004616394.1| - 8.5e-12 45.1 0.0 3.2e-11 43.2 0.0 1.9 2 0 0 2 2 2 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|336477253|ref|YP_004616394.1| - 2.9e-08 34.1 0.8 1.5e-06 28.5 0.8 2.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family PGF-CTERM PF18204.1 gi|336477253|ref|YP_004616394.1| - 6.9e-07 29.0 1.4 1.4e-06 28.1 1.4 1.5 1 0 0 1 1 1 1 PGF-CTERM motif PKD_3 PF16820.5 gi|336477253|ref|YP_004616394.1| - 0.083 12.7 5.0 0.084 12.6 0.3 2.6 2 1 0 2 2 2 0 PKD-like domain DUF2154 PF09922.9 gi|336477254|ref|YP_004616395.1| - 2.4e-11 43.5 0.1 3.9e-11 42.8 0.1 1.4 1 0 0 1 1 1 1 Cell wall-active antibiotics response 4TMS YvqF UPF0259 PF06790.11 gi|336477255|ref|YP_004616396.1| - 0.0052 16.6 18.8 0.0052 16.6 18.8 3.0 1 1 1 3 3 3 2 Uncharacterised protein family (UPF0259) 3-dmu-9_3-mt PF06983.13 gi|336477257|ref|YP_004616398.1| - 1e-78 261.4 1.4 5.5e-40 136.5 0.2 2.2 2 0 0 2 2 2 2 3-demethylubiquinone-9 3-methyltransferase Ribosomal_L12_N PF16320.5 gi|336477257|ref|YP_004616398.1| - 0.13 11.9 0.1 7.6 6.3 0.0 2.5 2 0 0 2 2 2 0 Ribosomal protein L7/L12 dimerisation domain Glug PF07581.12 gi|336477258|ref|YP_004616399.1| - 3.3e-35 118.1 103.7 1.6e-05 25.0 2.3 12.0 12 0 0 12 12 12 10 The GLUG motif DUF1724 PF08350.10 gi|336477259|ref|YP_004616400.1| - 1e-21 76.8 1.4 2.5e-21 75.6 1.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) PLDc_2 PF13091.6 gi|336477259|ref|YP_004616400.1| - 0.0028 17.6 0.0 0.0081 16.0 0.1 1.8 2 0 0 2 2 2 1 PLD-like domain Arch_flagellin PF01917.16 gi|336477260|ref|YP_004616401.1| - 7e-33 114.1 10.4 1e-32 113.6 10.4 1.3 1 1 0 1 1 1 1 Archaebacterial flagellin Fer4 PF00037.27 gi|336477261|ref|YP_004616402.1| - 5.8e-15 54.4 20.7 2e-09 36.9 7.8 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336477261|ref|YP_004616402.1| - 7.8e-12 44.7 17.9 5.9e-08 32.5 7.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336477261|ref|YP_004616402.1| - 9.3e-12 44.9 24.3 1.8e-07 31.1 12.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336477261|ref|YP_004616402.1| - 2.3e-11 44.1 18.5 1e-08 35.6 10.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336477261|ref|YP_004616402.1| - 4e-09 37.3 9.3 0.00023 22.0 3.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|336477261|ref|YP_004616402.1| - 4.2e-09 36.4 11.2 5.1e-09 36.1 11.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336477261|ref|YP_004616402.1| - 4.2e-08 33.2 6.8 5.4e-08 32.9 6.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336477261|ref|YP_004616402.1| - 5e-08 32.6 15.0 6.5e-06 25.9 4.8 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|336477261|ref|YP_004616402.1| - 1.3e-06 28.9 13.4 0.0016 19.2 6.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336477261|ref|YP_004616402.1| - 3e-05 24.2 12.9 0.00021 21.5 4.0 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.6 gi|336477261|ref|YP_004616402.1| - 0.00015 21.8 3.4 0.00016 21.8 3.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336477261|ref|YP_004616402.1| - 0.00033 21.0 8.9 0.014 15.8 2.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|336477261|ref|YP_004616402.1| - 0.00083 20.1 19.4 0.041 14.6 3.2 3.7 1 1 2 3 3 3 3 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|336477261|ref|YP_004616402.1| - 0.0018 18.8 9.0 0.021 15.4 2.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336477261|ref|YP_004616402.1| - 0.0084 16.6 18.2 0.47 11.0 7.3 3.1 2 2 2 4 4 4 3 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|336477261|ref|YP_004616402.1| - 0.028 15.3 3.3 0.27 12.1 0.6 2.0 2 0 0 2 2 2 0 4Fe-4S dicluster domain RLI PF04068.15 gi|336477261|ref|YP_004616402.1| - 0.038 13.8 8.5 0.72 9.7 0.8 3.7 2 2 0 2 2 2 0 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_18 PF13746.6 gi|336477261|ref|YP_004616402.1| - 0.91 9.7 11.4 3.9 7.7 11.2 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF326 PF03860.16 gi|336477261|ref|YP_004616402.1| - 2.3 8.3 10.2 4.9 7.3 0.1 3.1 2 1 0 2 2 2 0 Domain of Unknown Function (DUF326) Virul_fac_BrkB PF03631.15 gi|336477263|ref|YP_004616404.1| - 6.8e-49 166.8 26.8 7.7e-49 166.6 26.8 1.0 1 0 0 1 1 1 1 Virulence factor BrkB OppC_N PF12911.7 gi|336477263|ref|YP_004616404.1| - 0.012 15.6 0.4 0.012 15.6 0.4 4.2 5 0 0 5 5 5 0 N-terminal TM domain of oligopeptide transport permease C Phage_holin_3_6 PF07332.11 gi|336477263|ref|YP_004616404.1| - 0.02 14.9 1.6 0.02 14.9 1.6 3.0 3 1 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III Abhydrolase_9_N PF15420.6 gi|336477263|ref|YP_004616404.1| - 1.4 8.8 4.0 0.93 9.4 2.4 1.6 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus Metallophos PF00149.28 gi|336477264|ref|YP_004616405.1| - 1e-19 71.9 0.0 1.4e-19 71.4 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|336477264|ref|YP_004616405.1| - 6.9e-17 62.1 0.0 1.1e-16 61.5 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|336477264|ref|YP_004616405.1| - 2.6e-06 27.0 0.2 0.0026 17.1 0.1 3.0 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DUF4010 PF13194.6 gi|336477265|ref|YP_004616406.1| - 1.5e-49 168.5 18.7 1.5e-49 168.5 18.7 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|336477265|ref|YP_004616406.1| - 2.4e-16 60.2 11.8 2.4e-16 60.2 11.8 3.3 3 2 0 3 3 3 1 MgtC family TRM PF02005.16 gi|336477266|ref|YP_004616407.1| - 9.4e-106 354.1 0.0 1.1e-105 353.9 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_16 PF10294.9 gi|336477266|ref|YP_004616407.1| - 0.054 13.2 0.0 0.089 12.5 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Zn_Tnp_IS1595 PF12760.7 gi|336477266|ref|YP_004616407.1| - 0.11 12.5 0.5 0.23 11.5 0.5 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336477266|ref|YP_004616407.1| - 4.2 6.9 7.2 8.3 6.0 0.3 3.1 3 0 0 3 3 3 0 zinc-ribbon domain PriA_CRR PF18319.1 gi|336477266|ref|YP_004616407.1| - 8.8 6.4 6.6 11 6.1 0.9 2.6 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain HTH_27 PF13463.6 gi|336477267|ref|YP_004616408.1| - 0.0013 19.1 0.1 0.014 15.8 0.1 2.3 1 1 1 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|336477267|ref|YP_004616408.1| - 0.0017 18.2 0.1 0.0035 17.2 0.1 1.4 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|336477267|ref|YP_004616408.1| - 0.002 18.2 0.1 0.0062 16.6 0.0 1.9 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.6 gi|336477267|ref|YP_004616408.1| - 0.004 17.1 0.0 0.021 14.8 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DUF4364 PF14277.6 gi|336477267|ref|YP_004616408.1| - 0.0081 15.9 0.3 0.087 12.6 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|336477267|ref|YP_004616408.1| - 0.0099 15.8 0.3 0.046 13.7 0.2 2.0 1 1 1 2 2 2 1 Winged helix-turn-helix TrmB PF01978.19 gi|336477267|ref|YP_004616408.1| - 0.074 12.9 0.0 0.27 11.1 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336477267|ref|YP_004616408.1| - 0.076 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF2110 PF09883.9 gi|336477268|ref|YP_004616409.1| - 3.5e-86 288.4 0.2 4e-86 288.2 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) LAGLIDADG_WhiA PF14527.6 gi|336477268|ref|YP_004616409.1| - 0.00061 19.8 0.0 0.0014 18.7 0.0 1.7 1 0 0 1 1 1 1 WhiA LAGLIDADG-like domain DUF5633 PF18656.1 gi|336477268|ref|YP_004616409.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5633) DUF1759 PF03564.15 gi|336477268|ref|YP_004616409.1| - 0.12 12.3 0.1 0.31 11.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1759) V4R PF02830.18 gi|336477269|ref|YP_004616410.1| - 1.1e-17 63.7 3.5 2e-17 62.9 3.5 1.4 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.20 gi|336477269|ref|YP_004616410.1| - 1.4e-12 47.2 0.0 2.5e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|336477269|ref|YP_004616410.1| - 4.2e-08 32.9 0.0 6.7e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|336477269|ref|YP_004616410.1| - 0.00018 21.2 0.0 0.0003 20.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|336477269|ref|YP_004616410.1| - 0.00098 19.6 0.0 0.0016 18.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|336477269|ref|YP_004616410.1| - 0.0014 18.5 0.0 0.0025 17.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|336477269|ref|YP_004616410.1| - 0.0097 15.8 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|336477269|ref|YP_004616410.1| - 0.024 14.7 0.0 0.045 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.17 gi|336477269|ref|YP_004616410.1| - 0.038 13.9 0.0 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|336477269|ref|YP_004616410.1| - 0.2 11.3 0.0 0.56 9.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.12 gi|336477269|ref|YP_004616410.1| - 0.33 11.1 1.3 0.6 10.3 0.5 1.9 2 1 0 2 2 1 0 B-block binding subunit of TFIIIC Met_10 PF02475.16 gi|336477270|ref|YP_004616411.1| - 8.9e-66 221.4 0.1 1.2e-65 221.0 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|336477270|ref|YP_004616411.1| - 1.4e-10 40.9 3.9 2.7e-10 40.0 1.7 2.4 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain MTS PF05175.14 gi|336477270|ref|YP_004616411.1| - 5.4e-05 22.8 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|336477270|ref|YP_004616411.1| - 0.00014 21.1 0.0 0.0002 20.7 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_18 PF12847.7 gi|336477270|ref|YP_004616411.1| - 0.0042 17.0 0.1 0.011 15.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|336477270|ref|YP_004616411.1| - 0.0086 15.7 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|336477270|ref|YP_004616411.1| - 0.013 16.2 0.0 0.025 15.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|336477270|ref|YP_004616411.1| - 0.019 14.6 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PrmA PF06325.13 gi|336477270|ref|YP_004616411.1| - 0.027 13.9 0.0 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|336477270|ref|YP_004616411.1| - 0.035 13.2 0.0 0.056 12.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.11 gi|336477270|ref|YP_004616411.1| - 0.04 12.9 0.4 0.098 11.6 0.0 1.7 2 0 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase PTA_PTB PF01515.19 gi|336477270|ref|YP_004616411.1| - 0.088 12.1 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Phosphate acetyl/butaryl transferase Methyltransf_4 PF02390.17 gi|336477270|ref|YP_004616411.1| - 0.093 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase MCH PF02289.16 gi|336477271|ref|YP_004616412.1| - 2e-134 447.8 0.0 2.2e-134 447.6 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Fer4 PF00037.27 gi|336477272|ref|YP_004616413.1| - 1.3e-06 28.0 9.8 0.00052 19.7 2.0 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336477272|ref|YP_004616413.1| - 1.4e-06 28.1 8.7 0.002 18.1 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336477272|ref|YP_004616413.1| - 1.3e-05 26.1 11.9 0.00029 21.7 4.3 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|336477272|ref|YP_004616413.1| - 2.8e-05 24.6 6.2 5.1e-05 23.8 6.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336477272|ref|YP_004616413.1| - 0.00041 20.6 9.8 0.12 13.0 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336477272|ref|YP_004616413.1| - 0.00089 19.4 9.5 0.0086 16.2 10.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336477272|ref|YP_004616413.1| - 0.0015 18.5 10.9 0.0075 16.3 1.5 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|336477272|ref|YP_004616413.1| - 0.0022 18.4 2.7 0.1 13.1 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336477272|ref|YP_004616413.1| - 0.0029 18.4 9.2 0.93 10.6 4.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336477272|ref|YP_004616413.1| - 0.0031 17.6 10.7 0.043 14.0 11.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336477272|ref|YP_004616413.1| - 0.0034 17.4 12.2 0.062 13.4 13.2 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336477272|ref|YP_004616413.1| - 0.13 12.9 5.4 2.2 8.9 0.9 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336477272|ref|YP_004616413.1| - 1.7 9.2 9.1 1.7 9.2 3.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|336477272|ref|YP_004616413.1| - 3.5 7.8 9.0 4.8e+02 1.0 9.5 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain CbiM PF01891.16 gi|336477273|ref|YP_004616414.1| - 1.3e-47 162.4 22.3 1.4e-47 162.2 22.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region HAD_2 PF13419.6 gi|336477274|ref|YP_004616415.1| - 1.5e-31 109.8 0.2 1.9e-31 109.5 0.2 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336477274|ref|YP_004616415.1| - 1.9e-18 67.6 0.1 2.2e-17 64.1 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336477274|ref|YP_004616415.1| - 8.9e-11 41.7 0.0 1.8e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|336477274|ref|YP_004616415.1| - 0.0057 17.1 0.0 0.0079 16.6 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase MFS_1 PF07690.16 gi|336477275|ref|YP_004616416.1| - 1.7e-44 152.2 36.1 1.7e-44 152.2 36.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|336477275|ref|YP_004616416.1| - 5.8e-08 32.0 9.4 5.8e-08 32.0 9.4 2.7 2 1 0 2 2 2 1 Sugar (and other) transporter Usp PF00582.26 gi|336477276|ref|YP_004616417.1| - 8.7e-36 123.5 0.3 1.1e-35 123.2 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|336477276|ref|YP_004616417.1| - 0.011 15.6 0.4 0.05 13.5 0.4 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein domain HEM4 PF02602.15 gi|336477277|ref|YP_004616418.1| - 3.2e-41 141.2 0.0 3.6e-41 141.0 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Nitro_FeMo-Co PF02579.17 gi|336477277|ref|YP_004616418.1| - 0.077 13.3 0.0 17 5.8 0.0 2.4 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor RNA_pol_Rpb5_C PF01191.19 gi|336477277|ref|YP_004616418.1| - 0.12 12.2 0.1 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain TP_methylase PF00590.20 gi|336477278|ref|YP_004616419.1| - 1.6e-53 181.8 0.0 1.9e-53 181.6 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Chromo_2 PF18704.1 gi|336477280|ref|YP_004616421.1| - 0.17 12.2 0.1 0.23 11.7 0.1 1.2 1 0 0 1 1 1 0 Chromatin organization modifier domain 2 DUF1699 PF08004.11 gi|336477281|ref|YP_004616422.1| - 5.9e-62 207.1 0.8 6.6e-62 207.0 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Img2 PF05046.14 gi|336477281|ref|YP_004616422.1| - 0.067 13.5 0.0 0.18 12.1 0.0 1.7 1 1 1 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) DUF4394 PF14339.6 gi|336477281|ref|YP_004616422.1| - 0.15 11.4 0.0 0.18 11.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4394) Histidinol_dh PF00815.20 gi|336477282|ref|YP_004616423.1| - 2.9e-170 566.7 1.0 3.6e-170 566.4 1.0 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase H-kinase_dim PF02895.14 gi|336477282|ref|YP_004616423.1| - 0.14 12.5 0.1 0.34 11.3 0.1 1.6 1 0 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain DEAD PF00270.29 gi|336477283|ref|YP_004616424.1| - 9.5e-24 84.1 0.1 3.1e-22 79.2 0.0 3.3 5 0 0 5 5 5 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|336477283|ref|YP_004616424.1| - 1.2e-09 38.5 0.0 6.7e-08 32.9 0.0 3.1 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|336477283|ref|YP_004616424.1| - 3e-09 37.3 2.6 3.8e-09 37.0 0.6 2.2 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|336477283|ref|YP_004616424.1| - 1.5e-06 27.9 0.0 7.6e-06 25.7 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|336477283|ref|YP_004616424.1| - 0.022 14.8 0.0 0.077 13.1 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|336477283|ref|YP_004616424.1| - 0.047 13.9 0.0 0.15 12.3 0.0 1.9 1 1 0 1 1 1 0 Pathogenicity locus LRRFIP PF09738.9 gi|336477283|ref|YP_004616424.1| - 0.074 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 LRRFIP family PAH PF02671.21 gi|336477283|ref|YP_004616424.1| - 0.078 13.1 0.1 2.2 8.5 0.1 2.6 1 1 0 1 1 1 0 Paired amphipathic helix repeat HHH PF00633.23 gi|336477283|ref|YP_004616424.1| - 0.12 12.3 0.0 0.52 10.3 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif MS_channel PF00924.18 gi|336477284|ref|YP_004616425.1| - 2.2e-41 141.7 1.0 2.2e-41 141.7 1.0 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel SieB PF14163.6 gi|336477284|ref|YP_004616425.1| - 0.025 14.1 1.1 0.062 12.8 1.1 1.6 1 0 0 1 1 1 0 Super-infection exclusion protein B UPF0182 PF03699.13 gi|336477284|ref|YP_004616425.1| - 0.27 9.3 4.7 0.32 9.1 4.7 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF2070 PF09843.9 gi|336477284|ref|YP_004616425.1| - 3.1 6.0 10.4 4.5 5.4 10.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Hydrolase_3 PF08282.12 gi|336477285|ref|YP_004616426.1| - 4.9e-18 65.8 0.1 2e-17 63.8 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|336477285|ref|YP_004616426.1| - 4.3e-08 33.0 0.0 0.0013 18.3 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|336477285|ref|YP_004616426.1| - 2.9e-05 24.1 0.0 5.7e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336477285|ref|YP_004616426.1| - 0.00039 20.9 1.1 0.26 11.7 0.0 2.9 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336477285|ref|YP_004616426.1| - 0.0035 17.7 2.3 9.8 6.4 0.0 3.4 3 1 1 4 4 4 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|336477285|ref|YP_004616426.1| - 0.0039 17.3 3.0 1 9.4 0.0 3.7 3 1 1 4 4 4 2 Haloacid dehalogenase-like hydrolase Pro_3_hydrox_C PF05373.11 gi|336477286|ref|YP_004616427.1| - 0.13 12.4 0.0 0.32 11.1 0.0 1.7 1 0 0 1 1 1 0 L-proline 3-hydroxylase, C-terminal Oxidored_nitro PF00148.19 gi|336477286|ref|YP_004616427.1| - 0.16 10.7 0.0 0.24 10.1 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Glyco_hydro_15 PF00723.21 gi|336477287|ref|YP_004616428.1| - 0.00061 18.7 0.0 0.032 13.0 0.0 2.8 2 1 0 2 2 2 1 Glycosyl hydrolases family 15 PALP PF00291.25 gi|336477288|ref|YP_004616429.1| - 2.6e-39 135.4 0.0 3e-39 135.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Phos_pyr_kin PF08543.12 gi|336477289|ref|YP_004616430.1| - 4.1e-77 258.9 0.0 6e-77 258.3 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|336477289|ref|YP_004616430.1| - 3.4e-64 215.4 0.3 5.4e-64 214.8 0.3 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|336477289|ref|YP_004616430.1| - 2.3e-12 46.9 0.0 3.7e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|336477289|ref|YP_004616430.1| - 0.00024 20.6 0.2 0.00042 19.8 0.2 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Alpha_L_fucos PF01120.17 gi|336477289|ref|YP_004616430.1| - 0.15 11.5 0.0 1.6 8.1 0.0 2.0 2 0 0 2 2 2 0 Alpha-L-fucosidase LSM PF01423.22 gi|336477290|ref|YP_004616431.1| - 5.1e-23 80.5 0.2 5.5e-23 80.4 0.2 1.0 1 0 0 1 1 1 1 LSM domain Ribosomal_L37e PF01907.19 gi|336477291|ref|YP_004616432.1| - 2.5e-21 75.6 13.5 2.7e-21 75.5 13.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e MraY_sig1 PF10555.9 gi|336477291|ref|YP_004616432.1| - 0.24 11.0 1.3 0.36 10.4 1.3 1.3 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YhfH PF14149.6 gi|336477291|ref|YP_004616432.1| - 0.52 10.3 0.3 0.52 10.3 0.3 2.6 2 1 1 3 3 3 0 YhfH-like protein zn-ribbon_14 PF16503.5 gi|336477291|ref|YP_004616432.1| - 0.62 9.6 0.2 0.62 9.6 0.2 2.7 3 0 0 3 3 3 0 Zinc-ribbon GATase_7 PF13537.6 gi|336477292|ref|YP_004616433.1| - 1.3e-24 86.5 0.0 3e-24 85.3 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|336477292|ref|YP_004616433.1| - 1e-22 80.8 0.0 3.9e-22 78.9 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|336477292|ref|YP_004616433.1| - 4.8e-12 45.3 0.0 1.6e-09 37.1 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|336477292|ref|YP_004616433.1| - 3.4e-05 23.4 0.1 6.7e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_2 PF00310.21 gi|336477292|ref|YP_004616433.1| - 0.025 13.3 0.0 5.4 5.6 0.0 2.5 1 1 1 3 3 3 0 Glutamine amidotransferases class-II HTH_24 PF13412.6 gi|336477293|ref|YP_004616434.1| - 1.3e-06 27.9 0.1 2.4e-06 27.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|336477293|ref|YP_004616434.1| - 3.3e-06 26.8 0.2 8.8e-06 25.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF1887 PF09002.11 gi|336477293|ref|YP_004616434.1| - 3.5e-05 22.7 0.1 4.2e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) HTH_11 PF08279.12 gi|336477293|ref|YP_004616434.1| - 0.00022 21.1 0.0 0.00057 19.8 0.0 1.7 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|336477293|ref|YP_004616434.1| - 0.0006 19.7 0.1 0.0016 18.3 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|336477293|ref|YP_004616434.1| - 0.006 16.4 0.0 0.0098 15.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Cas_APE2256 PF09651.10 gi|336477293|ref|YP_004616434.1| - 0.0084 16.0 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) HTH_28 PF13518.6 gi|336477293|ref|YP_004616434.1| - 0.0097 16.0 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF3860 PF12976.7 gi|336477293|ref|YP_004616434.1| - 0.011 15.7 0.1 0.03 14.4 0.1 1.7 1 1 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3860) HTH_45 PF14947.6 gi|336477293|ref|YP_004616434.1| - 0.021 14.8 0.4 0.042 13.8 0.4 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Fe_dep_repress PF01325.19 gi|336477293|ref|YP_004616434.1| - 0.028 14.6 0.1 0.07 13.3 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|336477293|ref|YP_004616434.1| - 0.038 13.9 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.15 gi|336477293|ref|YP_004616434.1| - 0.072 13.2 0.1 0.26 11.4 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_20 PF12840.7 gi|336477293|ref|YP_004616434.1| - 0.073 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|336477293|ref|YP_004616434.1| - 0.1 12.2 1.0 0.19 11.3 0.2 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Thi4 PF01946.17 gi|336477294|ref|YP_004616435.1| - 1.4e-78 263.4 1.2 1.6e-78 263.2 1.2 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|336477294|ref|YP_004616435.1| - 8.4e-08 32.0 0.3 1.3e-07 31.4 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|336477294|ref|YP_004616435.1| - 2.6e-05 24.4 0.1 6.4e-05 23.1 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|336477294|ref|YP_004616435.1| - 0.00011 21.6 0.1 0.00013 21.4 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|336477294|ref|YP_004616435.1| - 0.0023 17.1 1.6 0.012 14.8 0.5 2.0 1 1 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|336477294|ref|YP_004616435.1| - 0.0035 16.6 0.0 0.0055 16.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|336477294|ref|YP_004616435.1| - 0.014 14.1 1.1 0.022 13.5 1.1 1.2 1 0 0 1 1 1 0 HI0933-like protein Bclx_interact PF08945.10 gi|336477294|ref|YP_004616435.1| - 0.027 14.2 0.3 0.09 12.6 0.1 1.8 2 0 0 2 2 2 0 Bcl-x interacting, BH3 domain Aconitase PF00330.20 gi|336477295|ref|YP_004616436.1| - 4.5e-100 335.8 3.6 5.6e-98 328.9 3.6 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|336477295|ref|YP_004616436.1| - 1.4e-05 24.0 0.0 2.1e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.19 gi|336477296|ref|YP_004616437.1| - 6.3e-18 65.4 0.0 8.4e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|336477296|ref|YP_004616437.1| - 4e-05 23.4 0.0 0.0024 17.6 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus AAA PF00004.29 gi|336477297|ref|YP_004616438.1| - 1.9e-37 128.6 0.0 3.8e-37 127.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336477297|ref|YP_004616438.1| - 3.2e-09 36.4 0.1 5.9e-09 35.6 0.1 1.5 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|336477297|ref|YP_004616438.1| - 2e-07 31.3 0.0 2.9e-06 27.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|336477297|ref|YP_004616438.1| - 7.6e-06 25.4 0.0 2.3e-05 23.8 0.0 1.8 1 1 1 2 2 2 1 TIP49 P-loop domain DUF815 PF05673.13 gi|336477297|ref|YP_004616438.1| - 2.2e-05 23.8 0.0 0.001 18.3 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|336477297|ref|YP_004616438.1| - 3.3e-05 24.2 0.6 0.0079 16.5 0.0 3.0 1 1 1 3 3 3 1 AAA domain IstB_IS21 PF01695.17 gi|336477297|ref|YP_004616438.1| - 9.8e-05 22.2 0.0 0.00022 21.0 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.14 gi|336477297|ref|YP_004616438.1| - 0.00021 21.3 0.0 0.0014 18.7 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|336477297|ref|YP_004616438.1| - 0.00022 21.0 0.0 0.0017 18.1 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Bac_DnaA PF00308.18 gi|336477297|ref|YP_004616438.1| - 0.00045 20.1 1.5 0.0036 17.2 0.0 2.7 2 1 1 3 3 3 1 Bacterial dnaA protein AAA_33 PF13671.6 gi|336477297|ref|YP_004616438.1| - 0.00069 19.8 0.0 0.0015 18.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|336477297|ref|YP_004616438.1| - 0.0018 17.8 0.0 0.018 14.5 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|336477297|ref|YP_004616438.1| - 0.0019 18.6 0.1 0.11 12.9 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 gi|336477297|ref|YP_004616438.1| - 0.005 17.1 0.0 0.016 15.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|336477297|ref|YP_004616438.1| - 0.0081 15.6 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|336477297|ref|YP_004616438.1| - 0.012 15.3 0.0 0.036 13.8 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|336477297|ref|YP_004616438.1| - 0.019 14.7 0.0 0.047 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|336477297|ref|YP_004616438.1| - 0.023 15.1 0.0 0.058 13.8 0.0 1.8 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 gi|336477297|ref|YP_004616438.1| - 0.026 14.5 0.0 0.056 13.4 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|336477297|ref|YP_004616438.1| - 0.038 14.6 0.0 0.085 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|336477297|ref|YP_004616438.1| - 0.057 13.5 0.0 0.17 12.0 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain NACHT PF05729.12 gi|336477297|ref|YP_004616438.1| - 0.069 13.1 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain IPT PF01745.16 gi|336477297|ref|YP_004616438.1| - 0.075 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase TniB PF05621.11 gi|336477297|ref|YP_004616438.1| - 0.092 12.1 0.0 0.58 9.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein RsgA_GTPase PF03193.16 gi|336477297|ref|YP_004616438.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|336477297|ref|YP_004616438.1| - 0.32 10.5 0.7 1.8 8.1 0.2 2.1 1 1 1 2 2 2 0 AAA domain HA70_C PF17993.1 gi|336477298|ref|YP_004616439.1| - 0.016 15.3 0.1 0.026 14.6 0.1 1.4 1 1 0 1 1 1 0 Haemagglutinin 70 C-terminal domain Lactamase_B_2 PF12706.7 gi|336477299|ref|YP_004616440.1| - 3.2e-21 75.8 0.0 2.5e-09 36.9 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336477299|ref|YP_004616440.1| - 1.3e-10 41.7 0.1 6.1e-09 36.2 0.1 2.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|336477299|ref|YP_004616440.1| - 9.3e-06 25.2 0.0 1.6e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease PDEase_II PF02112.15 gi|336477299|ref|YP_004616440.1| - 0.16 11.0 0.0 0.34 10.0 0.0 1.5 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II Ribosomal_S8e PF01201.22 gi|336477300|ref|YP_004616441.1| - 7.6e-38 129.8 7.0 8.6e-38 129.6 7.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e AsnC_trans_reg PF01037.21 gi|336477301|ref|YP_004616442.1| - 4.1e-15 55.5 0.2 8.6e-15 54.5 0.2 1.6 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|336477301|ref|YP_004616442.1| - 3.9e-12 45.5 0.2 3.6e-11 42.5 0.1 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|336477301|ref|YP_004616442.1| - 3.7e-09 36.3 0.4 2.1e-08 33.8 0.1 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|336477301|ref|YP_004616442.1| - 1.7e-05 24.7 0.1 0.00015 21.7 0.0 2.2 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain DUF1670 PF07900.11 gi|336477301|ref|YP_004616442.1| - 0.00016 21.2 1.4 0.00032 20.1 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1670) HTH_11 PF08279.12 gi|336477301|ref|YP_004616442.1| - 0.00078 19.3 0.9 0.0014 18.5 0.3 1.8 2 0 0 2 2 2 1 HTH domain Sigma70_r4_2 PF08281.12 gi|336477301|ref|YP_004616442.1| - 0.00085 19.0 0.1 0.0049 16.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 Phage_rep_O PF04492.13 gi|336477301|ref|YP_004616442.1| - 0.0045 17.5 0.1 0.025 15.2 0.0 2.0 2 0 0 2 2 2 1 Bacteriophage replication protein O MarR PF01047.22 gi|336477301|ref|YP_004616442.1| - 0.0051 16.7 0.1 0.013 15.4 0.1 1.6 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|336477301|ref|YP_004616442.1| - 0.017 15.0 0.8 0.03 14.2 0.5 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit FaeA PF04703.12 gi|336477301|ref|YP_004616442.1| - 0.048 14.0 0.0 0.096 13.1 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein HTH_DeoR PF08220.12 gi|336477301|ref|YP_004616442.1| - 0.069 12.9 0.3 0.14 11.9 0.3 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|336477301|ref|YP_004616442.1| - 0.072 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_Tnp_ISL3 PF13542.6 gi|336477301|ref|YP_004616442.1| - 0.079 12.4 0.1 0.43 10.0 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 LPD22 PF18834.1 gi|336477301|ref|YP_004616442.1| - 0.14 12.4 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 Large polyvalent protein associated domain 22 Rrf2 PF02082.20 gi|336477301|ref|YP_004616442.1| - 0.15 12.4 0.4 1 9.7 0.1 2.3 2 1 0 3 3 3 0 Transcriptional regulator Aminotran_1_2 PF00155.21 gi|336477302|ref|YP_004616443.1| - 1.4e-68 231.8 0.0 1.5e-68 231.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|336477302|ref|YP_004616443.1| - 2.9e-15 56.5 0.2 4.3e-15 55.9 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|336477302|ref|YP_004616443.1| - 2.4e-08 33.3 0.0 6.1e-08 32.0 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|336477302|ref|YP_004616443.1| - 4.6e-07 29.4 0.0 7.6e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|336477302|ref|YP_004616443.1| - 7e-06 24.8 0.1 1.1e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|336477302|ref|YP_004616443.1| - 0.024 13.3 0.0 0.029 13.0 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-III DUF5518 PF17647.1 gi|336477303|ref|YP_004616444.1| - 3.9e-09 36.7 22.2 4.2e-09 36.6 22.2 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF4191 PF13829.6 gi|336477303|ref|YP_004616444.1| - 6.3 6.1 6.5 7.2 5.9 6.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF5591 PF17884.1 gi|336477305|ref|YP_004616446.1| - 1.3e-20 73.8 0.2 2e-20 73.2 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) Fucose_iso_C PF02952.17 gi|336477305|ref|YP_004616446.1| - 0.081 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 L-fucose isomerase, C-terminal domain ATPase PF06745.13 gi|336477306|ref|YP_004616447.1| - 1.4e-49 168.5 2.0 1.8e-49 168.2 2.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|336477306|ref|YP_004616447.1| - 4.1e-09 35.6 0.2 5.3e-09 35.2 0.2 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|336477306|ref|YP_004616447.1| - 0.00058 19.2 0.2 0.049 12.9 0.1 2.4 2 1 0 2 2 2 1 Rad51 DnaB_C PF03796.15 gi|336477306|ref|YP_004616447.1| - 0.00085 18.7 0.2 0.0018 17.7 0.0 1.7 2 1 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|336477306|ref|YP_004616447.1| - 0.011 15.3 0.0 0.027 14.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|336477306|ref|YP_004616447.1| - 0.012 14.9 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|336477306|ref|YP_004616447.1| - 0.062 13.6 0.1 0.12 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain MEDS PF14417.6 gi|336477306|ref|YP_004616447.1| - 0.07 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain T2SSE PF00437.20 gi|336477306|ref|YP_004616447.1| - 0.097 11.7 0.2 0.16 11.0 0.1 1.5 1 1 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|336477306|ref|YP_004616447.1| - 0.21 12.0 3.1 1.1 9.6 3.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|336477306|ref|YP_004616447.1| - 0.37 10.5 2.0 1.5 8.5 2.0 1.9 1 1 0 1 1 1 0 AAA domain Glycogen_syn PF05693.13 gi|336477307|ref|YP_004616448.1| - 1.4e-12 47.0 0.7 9.3e-07 27.8 0.0 2.4 2 0 0 2 2 2 2 Glycogen synthase Glyco_transf_4 PF13439.6 gi|336477307|ref|YP_004616448.1| - 2.3e-05 24.5 0.0 4.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|336477307|ref|YP_004616448.1| - 0.013 15.0 0.2 0.097 12.2 0.0 2.6 4 0 0 4 4 4 0 Glycosyl transferases group 1 DUF4921 PF16268.5 gi|336477308|ref|YP_004616449.1| - 6.2e-15 54.9 1.2 1.1e-07 31.0 0.1 3.9 3 1 1 4 4 4 3 Domain of unknown function (DUF4921) GalP_UDP_transf PF01087.22 gi|336477308|ref|YP_004616449.1| - 6.8e-14 52.7 0.3 3.6e-10 40.6 0.0 2.5 2 1 1 3 3 3 2 Galactose-1-phosphate uridyl transferase, N-terminal domain DUF4931 PF16285.5 gi|336477308|ref|YP_004616449.1| - 9e-08 31.7 3.4 5.5e-07 29.1 3.4 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4931) HIT PF01230.23 gi|336477308|ref|YP_004616449.1| - 9.6e-07 29.5 0.0 0.043 14.6 0.0 2.3 2 0 0 2 2 2 2 HIT domain GalP_UDP_tr_C PF02744.17 gi|336477308|ref|YP_004616449.1| - 5.4e-06 26.2 0.0 8.8e-06 25.5 0.0 1.3 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.8 gi|336477308|ref|YP_004616449.1| - 0.00097 19.6 0.3 0.07 13.6 0.0 2.7 3 0 0 3 3 3 1 Scavenger mRNA decapping enzyme C-term binding SNF2_assoc PF08455.10 gi|336477308|ref|YP_004616449.1| - 0.026 13.6 0.1 0.049 12.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial SNF2 helicase associated AMNp_N PF10423.9 gi|336477308|ref|YP_004616449.1| - 0.073 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial AMP nucleoside phosphorylase N-terminus Glycos_transf_1 PF00534.20 gi|336477309|ref|YP_004616450.1| - 9.7e-28 96.8 0.0 1.7e-27 96.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|336477309|ref|YP_004616450.1| - 5.4e-25 88.3 0.4 9.6e-25 87.5 0.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|336477309|ref|YP_004616450.1| - 3.7e-23 82.4 0.0 5.6e-23 81.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|336477309|ref|YP_004616450.1| - 2.6e-16 60.5 0.0 4.4e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|336477309|ref|YP_004616450.1| - 9.8e-15 54.9 0.7 3.2e-12 46.7 0.7 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|336477309|ref|YP_004616450.1| - 3.2e-11 43.4 0.0 7e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|336477309|ref|YP_004616450.1| - 2.4e-05 24.6 0.0 5.2e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 GDE_C PF06202.14 gi|336477310|ref|YP_004616451.1| - 1.3e-127 425.9 0.1 1.7e-127 425.6 0.1 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|336477310|ref|YP_004616451.1| - 3.9e-73 245.5 0.2 5.6e-73 245.0 0.2 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Glyco_hydro_100 PF12899.7 gi|336477310|ref|YP_004616451.1| - 0.00096 17.9 0.2 0.55 8.8 0.0 2.2 2 0 0 2 2 2 2 Alkaline and neutral invertase Bac_rhamnosid6H PF17389.2 gi|336477310|ref|YP_004616451.1| - 0.013 14.8 0.1 0.02 14.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain DUF608 PF04685.13 gi|336477310|ref|YP_004616451.1| - 0.049 12.8 0.2 0.087 12.0 0.2 1.3 1 0 0 1 1 1 0 Glycosyl-hydrolase family 116, catalytic region DUF2582 PF10771.9 gi|336477311|ref|YP_004616452.1| - 4.2e-16 58.9 0.1 4.6e-16 58.7 0.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix domain (DUF2582) CorA PF01544.18 gi|336477312|ref|YP_004616453.1| - 8.3e-76 255.1 8.2 1.1e-75 254.7 8.2 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Vip3A_N PF12495.8 gi|336477312|ref|YP_004616453.1| - 0.2 11.5 4.1 0.46 10.4 0.2 2.4 1 1 0 2 2 2 0 Vegetative insecticide protein 3A N terminal DUF432 PF04254.13 gi|336477313|ref|YP_004616454.1| - 2.1e-47 160.4 0.3 3.4e-47 159.6 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.18 gi|336477314|ref|YP_004616455.1| - 1.2e-51 175.3 5.4 1.7e-51 174.7 5.4 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TMEM72 PF16054.5 gi|336477314|ref|YP_004616455.1| - 0.098 12.3 1.6 0.17 11.6 1.6 1.3 1 0 0 1 1 1 0 Transmembrane protein family 72 TctB PF07331.11 gi|336477314|ref|YP_004616455.1| - 0.19 12.0 9.8 0.3 11.3 9.8 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Glyco_hydro_57 PF03065.15 gi|336477315|ref|YP_004616456.1| - 4.3e-44 151.0 2.8 3.7e-43 148.0 2.8 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 TRIF-NTD PF17798.1 gi|336477315|ref|YP_004616456.1| - 0.044 13.9 0.1 0.093 12.8 0.1 1.5 1 0 0 1 1 1 0 TRIF N-terminal domain Glyco_hydro_57 PF03065.15 gi|336477316|ref|YP_004616457.1| - 2.3e-61 207.8 0.3 3.4e-61 207.2 0.3 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|336477316|ref|YP_004616457.1| - 0.0018 18.1 0.0 0.0037 17.2 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase V4R PF02830.18 gi|336477317|ref|YP_004616458.1| - 1.1e-13 51.0 0.1 2e-13 50.1 0.1 1.4 1 0 0 1 1 1 1 V4R domain Glyco_hydro_15 PF00723.21 gi|336477318|ref|YP_004616459.1| - 3.2e-17 62.5 0.0 2.4e-09 36.5 0.1 3.2 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 ADK_lid PF05191.14 gi|336477319|ref|YP_004616460.1| - 0.058 13.4 6.6 0.18 11.8 6.6 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid NTP_transf_3 PF12804.7 gi|336477320|ref|YP_004616461.1| - 1.3e-14 54.8 0.0 1.6e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|336477320|ref|YP_004616461.1| - 1.4e-07 31.5 0.0 1.9e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|336477320|ref|YP_004616461.1| - 6.5e-07 29.5 0.0 8.9e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|336477320|ref|YP_004616461.1| - 0.0099 15.5 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase DUF2064 PF09837.9 gi|336477320|ref|YP_004616461.1| - 0.036 13.9 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.16 gi|336477320|ref|YP_004616461.1| - 0.041 13.1 0.2 0.072 12.3 0.2 1.6 1 1 0 1 1 1 0 Guanylyl transferase CofC like CobS PF02654.15 gi|336477321|ref|YP_004616462.1| - 3e-38 132.1 14.1 3.6e-38 131.8 14.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase TssN PF17555.2 gi|336477321|ref|YP_004616462.1| - 4.7 6.5 13.7 0.23 10.8 7.6 1.9 2 1 0 2 2 2 0 Type VI secretion system, TssN PgpA PF04608.13 gi|336477322|ref|YP_004616463.1| - 7.4e-10 39.0 0.0 1e-09 38.6 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobD_Cbib PF03186.13 gi|336477323|ref|YP_004616464.1| - 1.8e-88 296.4 0.1 2.2e-88 296.1 0.1 1.1 1 0 0 1 1 1 1 CobD/Cbib protein AmpE PF17113.5 gi|336477323|ref|YP_004616464.1| - 0.023 14.1 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 Regulatory signalling modulator protein AmpE Cg6151-P PF10233.9 gi|336477323|ref|YP_004616464.1| - 1.5 9.2 6.6 0.13 12.6 1.7 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein CG6151-P Aminotran_1_2 PF00155.21 gi|336477324|ref|YP_004616465.1| - 1.1e-46 159.6 0.0 1.5e-46 159.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.12 gi|336477324|ref|YP_004616465.1| - 6.6e-26 90.0 6.2 1.5e-25 88.9 6.2 1.5 1 0 0 1 1 1 1 Cysteine-rich small domain Cys_Met_Meta_PP PF01053.20 gi|336477324|ref|YP_004616465.1| - 0.077 11.5 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|336477324|ref|YP_004616465.1| - 0.16 10.9 0.0 0.55 9.1 0.0 1.9 2 1 0 2 2 2 0 Aminotransferase class-V NTP_transf_3 PF12804.7 gi|336477325|ref|YP_004616466.1| - 7.9e-08 32.8 0.0 9.6e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|336477325|ref|YP_004616466.1| - 0.00039 20.4 0.0 0.00073 19.5 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|336477325|ref|YP_004616466.1| - 0.0068 16.2 0.0 0.0077 16.0 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Peripla_BP_4 PF13407.6 gi|336477325|ref|YP_004616466.1| - 0.15 11.6 0.0 0.2 11.2 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain NUMOD4 PF07463.11 gi|336477326|ref|YP_004616467.1| - 0.018 15.3 0.2 0.031 14.5 0.2 1.6 1 1 0 1 1 1 0 NUMOD4 motif DASH_Dad3 PF08656.10 gi|336477326|ref|YP_004616467.1| - 0.14 12.2 0.5 0.24 11.5 0.1 1.6 2 0 0 2 2 2 0 DASH complex subunit Dad3 tRNA-synt_His PF13393.6 gi|336477327|ref|YP_004616468.1| - 5.4e-64 216.4 0.0 7.2e-64 216.0 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|336477327|ref|YP_004616468.1| - 1.2e-14 54.7 0.0 2.5e-14 53.7 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|336477327|ref|YP_004616468.1| - 1.3e-12 47.7 0.1 2.2e-12 46.9 0.1 1.4 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|336477327|ref|YP_004616468.1| - 2.1e-05 23.7 5.3 0.032 13.3 1.0 3.4 2 2 1 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|336477327|ref|YP_004616468.1| - 0.0029 17.1 0.0 0.016 14.7 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|336477327|ref|YP_004616468.1| - 0.023 14.1 0.0 0.055 12.9 0.0 1.6 2 0 0 2 2 2 0 Phenylalanyl tRNA synthetase beta chain CLM domain Peptidase_M36 PF02128.15 gi|336477327|ref|YP_004616468.1| - 0.077 12.1 0.0 0.095 11.8 0.0 1.2 1 0 0 1 1 1 0 Fungalysin metallopeptidase (M36) AGOG PF09171.10 gi|336477328|ref|YP_004616469.1| - 0.072 12.4 0.0 0.081 12.2 0.0 1.1 1 0 0 1 1 1 0 N-glycosylase/DNA lyase Anillin PF08174.11 gi|336477330|ref|YP_004616471.1| - 0.06 13.8 0.0 0.078 13.4 0.0 1.3 1 0 0 1 1 1 0 Cell division protein anillin Endonuc_subdom PF09062.10 gi|336477331|ref|YP_004616472.1| - 0.076 13.8 0.9 0.87 10.4 0.2 2.6 2 0 0 2 2 2 0 PI-PfuI Endonuclease subdomain Ribosomal_S13_N PF08069.12 gi|336477332|ref|YP_004616473.1| - 9.5e-27 92.8 0.7 2.1e-26 91.7 0.7 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|336477332|ref|YP_004616473.1| - 1.5e-14 54.0 0.8 2.2e-14 53.4 0.8 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 YflT PF11181.8 gi|336477332|ref|YP_004616473.1| - 0.1 13.1 0.1 0.17 12.4 0.1 1.5 1 1 0 1 1 1 0 Heat induced stress protein YflT DHHA1 PF02272.19 gi|336477333|ref|YP_004616474.1| - 9.8e-17 61.7 1.7 2.5e-16 60.4 0.3 2.5 3 0 0 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|336477333|ref|YP_004616474.1| - 5e-06 26.7 1.9 5e-06 26.7 0.2 1.8 2 1 0 2 2 2 1 DHH family EIIA-man PF03610.16 gi|336477333|ref|YP_004616474.1| - 0.041 14.1 0.1 0.35 11.1 0.0 2.5 2 0 0 2 2 2 0 PTS system fructose IIA component Pcc1 PF09341.10 gi|336477334|ref|YP_004616475.1| - 0.00073 19.6 0.1 0.00092 19.3 0.1 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Cation_efflux PF01545.21 gi|336477335|ref|YP_004616476.1| - 1.2e-41 142.6 10.6 1.7e-41 142.2 10.6 1.2 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|336477335|ref|YP_004616476.1| - 3.1e-20 72.1 1.7 5.4e-20 71.3 1.7 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter EI24 PF07264.11 gi|336477335|ref|YP_004616476.1| - 0.0016 18.7 1.2 0.0025 18.1 1.2 1.2 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) DUF4307 PF14155.6 gi|336477335|ref|YP_004616476.1| - 0.14 12.0 1.1 1.4 8.8 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) tRNA_bind_4 PF18490.1 gi|336477337|ref|YP_004616478.1| - 1.2e-55 187.7 0.1 1.8e-55 187.1 0.1 1.3 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|336477337|ref|YP_004616478.1| - 2.8e-06 27.4 0.0 7.6e-06 26.0 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Ribosomal_S3Ae PF01015.18 gi|336477338|ref|YP_004616479.1| - 3.8e-67 225.8 4.1 4.2e-67 225.6 4.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Lar_restr_allev PF14354.6 gi|336477339|ref|YP_004616480.1| - 0.00016 22.0 0.4 0.00021 21.6 0.4 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|336477339|ref|YP_004616480.1| - 0.00065 19.8 0.7 1 9.6 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|336477339|ref|YP_004616480.1| - 0.00091 19.2 0.2 0.0013 18.6 0.2 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-RRN7 PF11781.8 gi|336477339|ref|YP_004616480.1| - 0.002 17.8 0.0 0.002 17.8 0.0 2.0 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|336477339|ref|YP_004616480.1| - 0.0076 15.7 2.7 0.0076 15.7 2.7 2.2 2 1 0 2 2 2 1 TFIIB zinc-binding C1_2 PF03107.16 gi|336477339|ref|YP_004616480.1| - 0.0095 16.2 1.0 0.017 15.4 1.0 1.4 1 0 0 1 1 1 1 C1 domain PADR1 PF08063.12 gi|336477339|ref|YP_004616480.1| - 0.013 15.2 3.0 0.33 10.8 3.6 2.0 1 1 1 2 2 2 0 PADR1 (NUC008) domain RecR PF02132.15 gi|336477339|ref|YP_004616480.1| - 0.016 14.8 1.0 3.6 7.2 0.1 2.3 2 0 0 2 2 2 0 RecR protein Nudix_N_2 PF14803.6 gi|336477339|ref|YP_004616480.1| - 0.02 14.8 0.2 7.5 6.6 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal TFIIS_C PF01096.18 gi|336477339|ref|YP_004616480.1| - 0.023 14.5 2.7 2.1 8.3 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DZR PF12773.7 gi|336477339|ref|YP_004616480.1| - 0.031 14.3 0.1 0.047 13.7 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|336477339|ref|YP_004616480.1| - 0.034 14.0 3.0 0.084 12.8 3.0 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit HypA PF01155.19 gi|336477339|ref|YP_004616480.1| - 0.047 13.7 0.4 0.15 12.1 0.4 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|336477339|ref|YP_004616480.1| - 0.058 13.1 1.2 3.7 7.3 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin_2 PF18073.1 gi|336477339|ref|YP_004616480.1| - 0.08 12.7 4.7 0.34 10.7 0.6 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain A2L_zn_ribbon PF08792.10 gi|336477339|ref|YP_004616480.1| - 0.091 12.5 5.1 0.61 9.9 5.1 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|336477339|ref|YP_004616480.1| - 0.33 10.4 5.8 3.4 7.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF523 PF04463.12 gi|336477340|ref|YP_004616481.1| - 2e-29 102.4 0.0 3.1e-29 101.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.11 gi|336477340|ref|YP_004616481.1| - 7e-13 48.9 0.0 1.2e-12 48.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) Thioredoxin PF00085.20 gi|336477341|ref|YP_004616482.1| - 7.2e-21 74.1 0.2 9e-21 73.8 0.2 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|336477341|ref|YP_004616482.1| - 1.3e-06 28.8 0.6 1.2e-05 25.7 0.6 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|336477341|ref|YP_004616482.1| - 1.4e-06 27.9 0.5 1.5e-06 27.8 0.5 1.0 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family AhpC-TSA PF00578.21 gi|336477341|ref|YP_004616482.1| - 0.00021 21.2 0.2 0.00031 20.6 0.2 1.3 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|336477341|ref|YP_004616482.1| - 0.0056 17.0 0.1 0.011 16.1 0.1 1.5 1 0 0 1 1 1 1 Thioredoxin-like TraF PF13728.6 gi|336477341|ref|YP_004616482.1| - 0.014 15.3 0.1 0.016 15.0 0.1 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein Redoxin PF08534.10 gi|336477341|ref|YP_004616482.1| - 0.028 14.1 0.1 0.036 13.8 0.1 1.3 1 0 0 1 1 1 0 Redoxin Thioredoxin_3 PF13192.6 gi|336477341|ref|YP_004616482.1| - 0.061 13.4 0.0 0.095 12.8 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin domain Thioredoxin_6 PF13848.6 gi|336477341|ref|YP_004616482.1| - 0.065 13.1 0.1 0.086 12.7 0.1 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain DIM1 PF02966.16 gi|336477341|ref|YP_004616482.1| - 0.076 12.8 0.0 0.099 12.4 0.0 1.1 1 0 0 1 1 1 0 Mitosis protein DIM1 T4_deiodinase PF00837.17 gi|336477341|ref|YP_004616482.1| - 0.088 12.1 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Iodothyronine deiodinase DUF2847 PF11009.8 gi|336477341|ref|YP_004616482.1| - 0.091 12.7 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2847) DSBA PF01323.20 gi|336477341|ref|YP_004616482.1| - 0.27 11.0 1.6 0.46 10.2 1.6 1.4 1 1 0 1 1 1 0 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|336477341|ref|YP_004616482.1| - 0.28 11.3 1.7 0.55 10.4 1.0 1.7 1 1 1 2 2 2 0 Thioredoxin Tetraspanin PF00335.20 gi|336477342|ref|YP_004616483.1| - 6.1 6.5 6.8 1.8 8.2 0.8 2.4 2 0 0 2 2 2 0 Tetraspanin family tRNA-synt_1c PF00749.21 gi|336477343|ref|YP_004616484.1| - 3e-62 210.3 0.0 3.8e-62 210.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|336477343|ref|YP_004616484.1| - 2.1e-25 89.6 0.0 4.3e-25 88.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Rrf2 PF02082.20 gi|336477344|ref|YP_004616485.1| - 0.00033 21.0 0.0 0.00045 20.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|336477344|ref|YP_004616485.1| - 0.002 18.0 0.0 0.0038 17.1 0.0 1.5 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|336477344|ref|YP_004616485.1| - 0.0026 17.3 0.0 0.0038 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.10 gi|336477344|ref|YP_004616485.1| - 0.0032 17.4 0.0 0.0046 16.9 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_47 PF16221.5 gi|336477344|ref|YP_004616485.1| - 0.0092 15.5 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 winged helix-turn-helix HTH_20 PF12840.7 gi|336477344|ref|YP_004616485.1| - 0.031 14.3 0.0 0.043 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|336477344|ref|YP_004616485.1| - 0.037 13.8 0.0 3.4 7.5 0.0 2.2 2 0 0 2 2 2 0 MerR family regulatory protein RepL PF05732.11 gi|336477344|ref|YP_004616485.1| - 0.089 12.2 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) TrmB PF01978.19 gi|336477344|ref|YP_004616485.1| - 0.15 12.0 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FAA_hydrolase PF01557.18 gi|336477345|ref|YP_004616486.1| - 4e-69 232.6 0.0 4.6e-69 232.4 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Usp PF00582.26 gi|336477346|ref|YP_004616487.1| - 4.7e-31 108.2 0.1 5.4e-31 108.0 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family ABC_sub_bind PF04392.12 gi|336477346|ref|YP_004616487.1| - 0.0037 16.5 1.0 0.0084 15.4 0.9 1.5 1 1 1 2 2 2 1 ABC transporter substrate binding protein Imm8 PF15586.6 gi|336477346|ref|YP_004616487.1| - 0.074 13.1 0.0 0.49 10.4 0.0 2.0 1 1 1 2 2 2 0 Immunity protein 8 DUF99 PF01949.16 gi|336477346|ref|YP_004616487.1| - 0.089 12.2 0.0 0.17 11.3 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF99 DUF5371 PF17341.2 gi|336477347|ref|YP_004616488.1| - 3.6e-39 132.8 5.2 4e-39 132.6 5.2 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5371) Pilin_N PF07790.11 gi|336477348|ref|YP_004616489.1| - 1e-22 80.9 4.3 1.8e-22 80.0 4.3 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal CTK3 PF12243.8 gi|336477350|ref|YP_004616491.1| - 0.13 12.2 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 CTD kinase subunit gamma CTK3 DUF4219 PF13961.6 gi|336477350|ref|YP_004616491.1| - 1.3 8.8 3.3 1.4 8.7 1.0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4219) HTH_32 PF13565.6 gi|336477351|ref|YP_004616492.1| - 8.9e-12 45.5 0.0 1.6e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|336477351|ref|YP_004616492.1| - 3e-08 33.6 0.0 6e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|336477351|ref|YP_004616492.1| - 6.5e-08 32.2 0.0 1.3e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|336477351|ref|YP_004616492.1| - 1.2e-07 31.2 0.0 2.7e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|336477351|ref|YP_004616492.1| - 0.002 18.2 0.1 0.007 16.5 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|336477351|ref|YP_004616492.1| - 0.018 15.6 0.0 0.026 15.0 0.0 1.4 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_7 PF02796.15 gi|336477351|ref|YP_004616492.1| - 0.043 13.9 0.1 6.6 6.9 0.0 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase UBA_6 PF18039.1 gi|336477351|ref|YP_004616492.1| - 0.12 12.3 0.1 0.48 10.4 0.0 2.0 2 0 0 2 2 2 0 UBA-like domain Abhydrolase_1 PF00561.20 gi|336477352|ref|YP_004616493.1| - 1.5e-23 83.8 0.7 1.5e-22 80.5 0.7 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|336477352|ref|YP_004616493.1| - 3.5e-19 69.0 0.2 3.7e-18 65.7 0.2 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|336477352|ref|YP_004616493.1| - 8.7e-18 65.7 0.0 1.1e-17 65.4 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.14 gi|336477352|ref|YP_004616493.1| - 1.6e-07 30.4 0.0 1.9e-06 26.8 0.0 2.0 1 1 0 1 1 1 1 Ndr family FSH1 PF03959.13 gi|336477352|ref|YP_004616493.1| - 3.6e-05 23.5 0.1 0.0029 17.3 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Abhydrolase_4 PF08386.10 gi|336477352|ref|YP_004616493.1| - 0.002 18.2 0.0 0.2 11.8 0.0 2.3 2 0 0 2 2 2 1 TAP-like protein DLH PF01738.18 gi|336477352|ref|YP_004616493.1| - 0.032 13.8 0.0 0.061 12.9 0.0 1.4 1 0 0 1 1 1 0 Dienelactone hydrolase family Abhydrolase_2 PF02230.16 gi|336477352|ref|YP_004616493.1| - 0.036 13.9 0.3 0.72 9.6 0.2 2.4 2 1 0 2 2 2 0 Phospholipase/Carboxylesterase DUF927 PF06048.11 gi|336477353|ref|YP_004616494.1| - 1.8e-56 191.8 0.0 3.2e-56 191.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF927) T2SSE PF00437.20 gi|336477353|ref|YP_004616494.1| - 0.09 11.8 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein TFIIA_gamma_N PF02268.16 gi|336477353|ref|YP_004616494.1| - 0.099 12.7 0.1 18 5.4 0.0 3.0 3 0 0 3 3 3 0 Transcription initiation factor IIA, gamma subunit, helical domain N6_Mtase PF02384.16 gi|336477354|ref|YP_004616495.1| - 1.5e-119 398.9 0.0 2.2e-119 398.4 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|336477354|ref|YP_004616495.1| - 4.1e-24 85.8 0.5 4.1e-24 85.8 0.5 2.0 2 1 0 2 2 2 1 HsdM N-terminal domain MTS PF05175.14 gi|336477354|ref|YP_004616495.1| - 0.0092 15.5 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Eco57I PF07669.11 gi|336477354|ref|YP_004616495.1| - 0.048 14.2 0.0 0.14 12.7 0.0 1.8 1 0 0 1 1 1 0 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|336477354|ref|YP_004616495.1| - 0.058 13.1 0.0 0.16 11.6 0.0 1.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Mis12 PF05859.12 gi|336477354|ref|YP_004616495.1| - 0.06 13.4 0.4 2.9 7.9 0.1 2.5 2 1 0 2 2 2 0 Mis12 protein Methylase_S PF01420.19 gi|336477355|ref|YP_004616496.1| - 3.5e-45 154.2 9.7 1.6e-22 80.5 3.5 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain ING PF12998.7 gi|336477355|ref|YP_004616496.1| - 0.077 13.6 0.8 0.27 11.8 0.0 2.2 2 0 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding DUF3387 PF11867.8 gi|336477357|ref|YP_004616498.1| - 1.6e-115 386.0 21.4 6.5e-115 384.0 15.6 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3387) SWI2_SNF2 PF18766.1 gi|336477357|ref|YP_004616498.1| - 9.7e-82 274.0 0.0 3.9e-81 272.0 0.0 2.1 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|336477357|ref|YP_004616498.1| - 1.8e-38 132.5 0.2 1.8e-38 132.5 0.2 2.8 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|336477357|ref|YP_004616498.1| - 5.9e-18 65.4 0.0 5.9e-18 65.4 0.0 2.8 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|336477357|ref|YP_004616498.1| - 1.9e-05 24.5 0.1 0.0026 17.5 0.0 3.3 2 1 1 3 3 3 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|336477357|ref|YP_004616498.1| - 9.2e-05 22.7 0.5 0.03 14.6 0.0 3.8 4 1 0 4 4 4 1 AAA domain Helicase_C PF00271.31 gi|336477357|ref|YP_004616498.1| - 0.0015 18.8 0.4 0.012 16.0 0.1 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain Transglut_core PF01841.19 gi|336477358|ref|YP_004616499.1| - 0.11 13.0 0.0 0.24 11.8 0.0 1.7 1 0 0 1 1 1 0 Transglutaminase-like superfamily IF3_C PF00707.22 gi|336477358|ref|YP_004616499.1| - 0.14 12.1 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain ChitinaseA_N PF08329.10 gi|336477359|ref|YP_004616500.1| - 0.013 15.1 0.0 0.032 13.9 0.0 1.6 1 0 0 1 1 1 0 Chitinase A, N-terminal domain Serglycin PF04360.12 gi|336477359|ref|YP_004616500.1| - 5 7.1 5.1 12 5.9 5.1 1.5 1 0 0 1 1 1 0 Serglycin S-layer PF07752.11 gi|336477360|ref|YP_004616501.1| - 2e-265 875.8 69.8 6.1e-93 310.6 5.1 7.0 6 1 1 7 7 7 5 S-layer protein NosD PF05048.13 gi|336477360|ref|YP_004616501.1| - 1.7e-41 142.1 160.0 3.7e-28 98.4 40.6 7.9 5 1 3 8 8 8 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|336477360|ref|YP_004616501.1| - 2.7e-39 134.5 168.0 3.9e-13 49.5 29.8 7.8 6 1 4 10 10 10 5 Right handed beta helix region Pur_ac_phosph_N PF16656.5 gi|336477360|ref|YP_004616501.1| - 0.00077 20.0 4.0 0.0034 17.9 4.0 2.2 1 0 0 1 1 1 1 Purple acid Phosphatase, N-terminal domain DUF2369 PF10179.9 gi|336477360|ref|YP_004616501.1| - 0.00087 19.6 0.1 0.074 13.5 0.1 3.5 3 0 0 3 3 3 1 Uncharacterised conserved protein (DUF2369) tRNA-synt_1c_C PF03950.18 gi|336477360|ref|YP_004616501.1| - 0.0031 17.4 2.7 6.1 6.7 0.0 4.8 4 0 0 4 4 4 1 tRNA synthetases class I (E and Q), anti-codon binding domain fn3 PF00041.21 gi|336477360|ref|YP_004616501.1| - 0.014 15.7 0.7 0.06 13.7 0.7 2.1 1 0 0 1 1 1 0 Fibronectin type III domain Phage_integrase PF00589.22 gi|336477361|ref|YP_004616502.1| - 3.8e-09 36.6 0.0 5.5e-08 32.8 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_integrase PF00589.22 gi|336477362|ref|YP_004616503.1| - 1.9e-16 60.3 0.2 1.6e-14 54.1 0.1 2.3 2 0 0 2 2 2 2 Phage integrase family A2L_zn_ribbon PF08792.10 gi|336477362|ref|YP_004616503.1| - 0.088 12.6 1.3 2 8.2 0.0 2.6 2 1 0 2 2 2 0 A2L zinc ribbon domain Pilin_N PF07790.11 gi|336477363|ref|YP_004616504.1| - 4.2e-21 75.7 1.9 7e-21 74.9 1.9 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal PocR PF10114.9 gi|336477367|ref|YP_004616508.1| - 2.9e-47 160.4 0.0 5.4e-47 159.6 0.0 1.5 1 0 0 1 1 1 1 Sensory domain found in PocR HATPase_c PF02518.26 gi|336477367|ref|YP_004616508.1| - 4.6e-34 117.3 0.5 1.2e-33 116.0 0.5 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|336477367|ref|YP_004616508.1| - 6.1e-22 77.7 0.0 3e-10 40.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|336477367|ref|YP_004616508.1| - 7.1e-22 77.7 0.0 5.7e-13 49.1 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|336477367|ref|YP_004616508.1| - 1.3e-20 73.5 1.4 3.1e-15 56.3 0.0 3.6 4 0 0 4 4 3 2 PAS domain HisKA PF00512.25 gi|336477367|ref|YP_004616508.1| - 8.7e-20 70.5 1.2 1.5e-19 69.7 0.1 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|336477367|ref|YP_004616508.1| - 7.4e-16 58.2 0.0 4.8e-13 49.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|336477367|ref|YP_004616508.1| - 1.7e-07 31.1 0.0 5.2e-07 29.6 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 gi|336477367|ref|YP_004616508.1| - 1.1e-05 25.3 0.1 2.7e-05 24.0 0.1 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|336477367|ref|YP_004616508.1| - 0.041 13.9 0.0 0.091 12.7 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain MEKHLA PF08670.11 gi|336477367|ref|YP_004616508.1| - 0.057 13.3 0.0 0.22 11.4 0.0 1.9 2 0 0 2 2 2 0 MEKHLA domain PAS_7 PF12860.7 gi|336477367|ref|YP_004616508.1| - 0.089 13.0 0.0 2.4 8.3 0.0 3.2 2 1 0 2 2 2 0 PAS fold PAS_4 PF08448.10 gi|336477368|ref|YP_004616509.1| - 0.00019 21.6 0.0 0.00028 21.1 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|336477368|ref|YP_004616509.1| - 0.00022 21.2 0.0 0.00026 21.0 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|336477368|ref|YP_004616509.1| - 0.12 12.6 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 PAS domain dCMP_cyt_deam_1 PF00383.23 gi|336477370|ref|YP_004616511.1| - 3.8e-23 81.3 0.0 5.3e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|336477370|ref|YP_004616511.1| - 6.8e-23 80.9 0.1 7.7e-23 80.8 0.1 1.0 1 0 0 1 1 1 1 MafB19-like deaminase SNAD4 PF18750.1 gi|336477370|ref|YP_004616511.1| - 0.0011 19.0 0.0 0.0032 17.6 0.0 1.7 2 0 0 2 2 2 1 Secreted Novel AID/APOBEC-like Deaminase 4 Bd3614-deam PF14439.6 gi|336477370|ref|YP_004616511.1| - 0.0034 17.4 0.2 0.0068 16.5 0.1 1.4 1 1 0 1 1 1 1 Bd3614-like deaminase NAD1 PF18778.1 gi|336477370|ref|YP_004616511.1| - 0.018 15.2 0.0 0.053 13.6 0.0 1.7 2 0 0 2 2 2 0 Novel AID APOBEC clade 1 APOBEC_N PF08210.11 gi|336477370|ref|YP_004616511.1| - 0.029 14.3 0.0 0.072 13.0 0.0 1.8 1 1 0 1 1 1 0 APOBEC-like N-terminal domain APOBEC2 PF18772.1 gi|336477370|ref|YP_004616511.1| - 0.05 13.7 0.0 0.12 12.4 0.0 1.6 1 1 1 2 2 2 0 APOBEC2 APOBEC3 PF18771.1 gi|336477370|ref|YP_004616511.1| - 0.081 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 APOBEC3 Nitroreductase PF00881.24 gi|336477371|ref|YP_004616512.1| - 5.8e-36 124.1 0.0 6.6e-36 123.9 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|336477371|ref|YP_004616512.1| - 7.8e-16 58.3 3.3 4.8e-07 29.6 0.0 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase CbiK PF06180.11 gi|336477371|ref|YP_004616512.1| - 0.025 13.9 0.0 0.029 13.7 0.0 1.1 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) aGPT-Pplase1 PF18723.1 gi|336477371|ref|YP_004616512.1| - 0.032 13.7 0.0 0.035 13.6 0.0 1.1 1 0 0 1 1 1 0 alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 1 SPOR PF05036.13 gi|336477371|ref|YP_004616512.1| - 0.097 13.1 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 Sporulation related domain ClpS PF02617.17 gi|336477371|ref|YP_004616512.1| - 0.18 11.6 0.0 2.3 8.1 0.0 2.1 2 0 0 2 2 2 0 ATP-dependent Clp protease adaptor protein ClpS Pirin PF02678.16 gi|336477372|ref|YP_004616513.1| - 2.2e-33 114.5 1.5 3.5e-33 113.8 0.7 1.7 2 0 0 2 2 2 1 Pirin Pirin_C_2 PF17954.1 gi|336477372|ref|YP_004616513.1| - 3.2e-14 52.9 0.0 7.1e-14 51.7 0.0 1.6 2 0 0 2 2 2 1 Quercetinase C-terminal cupin domain Cupin_2 PF07883.11 gi|336477372|ref|YP_004616513.1| - 2.4e-09 36.8 0.9 3.9e-08 32.9 0.4 2.5 2 1 0 2 2 2 1 Cupin domain Pirin_C PF05726.13 gi|336477372|ref|YP_004616513.1| - 0.024 15.0 0.0 0.33 11.3 0.0 2.1 2 0 0 2 2 2 0 Pirin C-terminal cupin domain Crystall_2 PF09076.10 gi|336477372|ref|YP_004616513.1| - 0.065 13.1 0.1 0.75 9.7 0.1 2.5 3 0 0 3 3 3 0 Beta/Gamma crystallin PMD PF10536.9 gi|336477372|ref|YP_004616513.1| - 0.11 11.5 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 Plant mobile domain DUF61 PF01886.16 gi|336477373|ref|YP_004616514.1| - 2.6e-34 118.0 0.0 2.9e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 PLDc_N PF13396.6 gi|336477374|ref|YP_004616515.1| - 7.7e-13 48.2 1.3 7.7e-13 48.2 1.3 2.4 3 0 0 3 3 3 1 Phospholipase_D-nuclease N-terminal HlyIII PF03006.20 gi|336477374|ref|YP_004616515.1| - 0.00076 19.3 4.4 0.00085 19.1 4.4 1.0 1 0 0 1 1 1 1 Haemolysin-III related DUF1980 PF09323.10 gi|336477374|ref|YP_004616515.1| - 0.036 14.0 8.5 0.05 13.5 8.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) Tmemb_161AB PF10268.9 gi|336477374|ref|YP_004616515.1| - 0.091 11.4 5.1 0.1 11.2 5.1 1.0 1 0 0 1 1 1 0 Predicted transmembrane protein 161AB DUF1496 PF07383.12 gi|336477374|ref|YP_004616515.1| - 0.12 12.0 0.2 0.17 11.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1496) DUF2070 PF09843.9 gi|336477374|ref|YP_004616515.1| - 0.55 8.5 5.3 0.61 8.3 5.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Wzz PF02706.15 gi|336477374|ref|YP_004616515.1| - 1.3 9.4 0.1 1.3 9.4 0.1 2.6 2 1 1 3 3 3 0 Chain length determinant protein YajC PF02699.15 gi|336477374|ref|YP_004616515.1| - 3.2 7.7 11.4 5 7.1 0.3 3.1 3 0 0 3 3 3 0 Preprotein translocase subunit Glycophorin_A PF01102.18 gi|336477374|ref|YP_004616515.1| - 3.3 8.0 4.4 11 6.3 0.0 2.1 2 0 0 2 2 2 0 Glycophorin A DPM3 PF08285.11 gi|336477374|ref|YP_004616515.1| - 3.7 7.8 7.9 0.85 9.9 1.9 2.1 1 1 1 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Wzy_C_2 PF11846.8 gi|336477374|ref|YP_004616515.1| - 6.6 6.6 7.2 1 9.2 0.7 1.8 1 1 1 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal DUF2207 PF09972.9 gi|336477374|ref|YP_004616515.1| - 7 5.3 12.9 0.91 8.2 5.7 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) PASTA PF03793.19 gi|336477376|ref|YP_004616517.1| - 3.5e-29 100.4 6.1 4.5e-15 55.2 0.6 3.4 4 0 0 4 4 4 2 PASTA domain UPF0242 PF06785.11 gi|336477376|ref|YP_004616517.1| - 0.0031 17.6 11.1 0.0051 16.9 11.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Spc7 PF08317.11 gi|336477376|ref|YP_004616517.1| - 0.0032 16.4 15.3 0.0051 15.7 15.3 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein APG6_N PF17675.1 gi|336477376|ref|YP_004616517.1| - 0.015 15.8 11.4 0.03 14.9 11.4 1.6 1 0 0 1 1 1 0 Apg6 coiled-coil region MPS2 PF17060.5 gi|336477376|ref|YP_004616517.1| - 0.028 13.7 11.0 0.045 13.0 11.0 1.3 1 0 0 1 1 1 0 Monopolar spindle protein 2 Fez1 PF06818.15 gi|336477376|ref|YP_004616517.1| - 0.028 14.9 14.5 0.043 14.3 14.5 1.2 1 0 0 1 1 1 0 Fez1 Leu_zip PF15294.6 gi|336477376|ref|YP_004616517.1| - 0.049 13.2 13.7 0.11 12.0 13.7 1.6 1 0 0 1 1 1 0 Leucine zipper MscS_porin PF12795.7 gi|336477376|ref|YP_004616517.1| - 0.059 12.9 11.7 0.085 12.4 11.7 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Laminin_I PF06008.14 gi|336477376|ref|YP_004616517.1| - 0.067 12.9 12.1 0.22 11.2 11.8 2.0 2 1 0 2 2 2 0 Laminin Domain I V_ATPase_I PF01496.19 gi|336477376|ref|YP_004616517.1| - 0.12 10.3 6.2 0.14 10.0 6.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family OmpH PF03938.14 gi|336477376|ref|YP_004616517.1| - 0.14 12.5 7.6 0.24 11.7 7.6 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) TolA_bind_tri PF16331.5 gi|336477376|ref|YP_004616517.1| - 0.15 12.2 7.8 1.6 8.8 5.4 2.5 1 1 1 2 2 2 0 TolA binding protein trimerisation DUF3053 PF11254.8 gi|336477376|ref|YP_004616517.1| - 0.27 10.8 3.3 0.57 9.7 3.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3053) Osmo_CC PF08946.10 gi|336477376|ref|YP_004616517.1| - 0.32 11.3 8.3 6.4 7.1 1.3 3.0 1 1 1 2 2 2 0 Osmosensory transporter coiled coil GrpE PF01025.19 gi|336477376|ref|YP_004616517.1| - 0.36 10.5 13.1 0.44 10.2 10.9 2.0 1 1 0 1 1 1 0 GrpE DUF3450 PF11932.8 gi|336477376|ref|YP_004616517.1| - 0.49 9.7 8.2 0.8 9.0 8.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) CENP-F_leu_zip PF10473.9 gi|336477376|ref|YP_004616517.1| - 0.51 10.4 19.3 1.8 8.6 19.3 2.0 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF730 PF05325.11 gi|336477376|ref|YP_004616517.1| - 0.83 9.7 4.1 1.3 9.0 3.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF730) DivIC PF04977.15 gi|336477376|ref|YP_004616517.1| - 1.2 9.0 12.4 9.4 6.1 9.2 3.3 1 1 2 3 3 3 0 Septum formation initiator CENP-H PF05837.12 gi|336477376|ref|YP_004616517.1| - 1.5 9.3 13.2 1.7 9.1 11.8 1.9 1 1 0 1 1 1 0 Centromere protein H (CENP-H) Prominin PF05478.11 gi|336477376|ref|YP_004616517.1| - 1.6 6.6 7.6 2.2 6.2 7.6 1.3 1 0 0 1 1 1 0 Prominin YabA PF06156.13 gi|336477376|ref|YP_004616517.1| - 1.7 9.3 11.5 1.9 9.2 9.5 2.1 1 1 1 2 2 1 0 Initiation control protein YabA Exonuc_VII_L PF02601.15 gi|336477376|ref|YP_004616517.1| - 2.8 7.4 10.4 4.7 6.7 10.4 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF4407 PF14362.6 gi|336477376|ref|YP_004616517.1| - 3.5 6.9 6.1 5.1 6.4 6.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FAM76 PF16046.5 gi|336477376|ref|YP_004616517.1| - 3.9 6.7 11.5 6 6.1 10.9 1.6 1 1 0 1 1 1 0 FAM76 protein APC_N_CC PF16689.5 gi|336477376|ref|YP_004616517.1| - 4.1 7.6 11.4 0.2 11.7 3.9 2.7 2 1 1 3 3 2 0 Coiled-coil N-terminus of APC, dimerisation domain Atg14 PF10186.9 gi|336477376|ref|YP_004616517.1| - 5.6 6.0 15.2 8 5.4 15.2 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1664 PF07889.12 gi|336477376|ref|YP_004616517.1| - 8.3 6.5 8.6 13 5.8 6.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Fungal_TACC PF12709.7 gi|336477376|ref|YP_004616517.1| - 8.6 6.9 14.5 6 7.4 6.5 3.3 1 1 2 3 3 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins Prefoldin_2 PF01920.20 gi|336477376|ref|YP_004616517.1| - 9.9 6.2 17.5 1.5 8.8 6.2 2.9 1 1 1 2 2 2 0 Prefoldin subunit Nitroreductase PF00881.24 gi|336477379|ref|YP_004616520.1| - 1e-33 116.8 0.0 1.4e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|336477379|ref|YP_004616520.1| - 0.0041 16.7 0.0 0.04 13.5 0.0 2.3 2 0 0 2 2 2 1 Putative TM nitroreductase UPF0697 PF15117.6 gi|336477379|ref|YP_004616520.1| - 0.13 12.3 0.0 1.8 8.7 0.0 2.7 3 1 0 3 3 3 0 Uncharacterised protein family UPF0697 PBP_like_2 PF12849.7 gi|336477380|ref|YP_004616521.1| - 2.3e-41 142.3 0.1 4.4e-41 141.4 0.1 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|336477380|ref|YP_004616521.1| - 1.4e-16 60.2 0.0 1.9e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|336477380|ref|YP_004616521.1| - 3.1e-06 27.1 0.0 5.7e-06 26.2 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|336477380|ref|YP_004616521.1| - 0.0066 15.9 0.0 0.0088 15.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|336477380|ref|YP_004616521.1| - 0.081 12.7 0.0 0.16 11.8 0.0 1.5 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein DUF1724 PF08350.10 gi|336477381|ref|YP_004616522.1| - 1.3e-19 70.1 0.1 2.8e-19 69.0 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.7 gi|336477381|ref|YP_004616522.1| - 0.00036 20.5 0.0 0.0007 19.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336477381|ref|YP_004616522.1| - 0.0029 17.4 0.2 0.0057 16.5 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF1884 PF08967.10 gi|336477381|ref|YP_004616522.1| - 0.0094 16.2 0.1 0.025 14.8 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1884) ABC-3 PF00950.17 gi|336477382|ref|YP_004616523.1| - 1.6e-64 217.9 43.0 1.8e-64 217.8 43.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|336477382|ref|YP_004616523.1| - 3.3e-05 23.1 44.3 0.00015 20.9 44.3 2.1 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|336477383|ref|YP_004616524.1| - 1.7e-26 93.4 0.0 2.7e-26 92.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336477383|ref|YP_004616524.1| - 6.7e-13 49.1 3.4 6.5e-09 36.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336477383|ref|YP_004616524.1| - 7.5e-06 25.5 0.6 4.4e-05 23.0 0.6 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|336477383|ref|YP_004616524.1| - 0.0022 18.2 0.4 0.1 12.9 0.4 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|336477383|ref|YP_004616524.1| - 0.004 17.6 0.3 0.026 15.0 0.3 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|336477383|ref|YP_004616524.1| - 0.023 14.3 0.0 1 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|336477383|ref|YP_004616524.1| - 0.038 14.5 0.1 0.063 13.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|336477383|ref|YP_004616524.1| - 0.04 13.7 0.1 0.085 12.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|336477383|ref|YP_004616524.1| - 0.073 13.0 0.2 0.23 11.4 0.2 1.8 1 1 1 2 2 2 0 NACHT domain T2SSE PF00437.20 gi|336477383|ref|YP_004616524.1| - 0.084 11.9 0.1 0.13 11.2 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Roc PF08477.13 gi|336477383|ref|YP_004616524.1| - 0.088 13.0 0.0 12 6.1 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Pox_A32 PF04665.12 gi|336477383|ref|YP_004616524.1| - 0.09 12.2 0.1 2.5 7.5 0.0 2.1 2 0 0 2 2 2 0 Poxvirus A32 protein ATP-synt_ab PF00006.25 gi|336477383|ref|YP_004616524.1| - 0.092 12.4 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RecA PF00154.21 gi|336477383|ref|YP_004616524.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein NTPase_1 PF03266.15 gi|336477383|ref|YP_004616524.1| - 0.14 12.1 0.2 0.91 9.4 0.1 2.0 2 0 0 2 2 2 0 NTPase MobB PF03205.14 gi|336477383|ref|YP_004616524.1| - 0.17 11.8 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ZnuA PF01297.17 gi|336477384|ref|YP_004616525.1| - 1.1e-77 260.9 0.0 2.2e-77 259.9 0.0 1.5 1 1 0 1 1 1 1 Zinc-uptake complex component A periplasmic Lactonase PF10282.9 gi|336477384|ref|YP_004616525.1| - 0.0059 15.9 0.0 0.031 13.5 0.0 1.9 2 0 0 2 2 2 1 Lactonase, 7-bladed beta-propeller PD40 PF07676.12 gi|336477384|ref|YP_004616525.1| - 0.056 13.4 0.0 0.52 10.3 0.0 2.5 2 0 0 2 2 2 0 WD40-like Beta Propeller Repeat GPDPase_memb PF10110.9 gi|336477385|ref|YP_004616526.1| - 3.2e-07 29.4 24.3 1.3e-05 24.2 15.4 2.5 1 1 1 2 2 2 2 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.11 gi|336477385|ref|YP_004616526.1| - 0.00089 19.1 23.3 0.00094 19.0 15.0 2.3 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0259) DUF624 PF04854.14 gi|336477385|ref|YP_004616526.1| - 0.00091 19.3 14.7 0.11 12.7 0.4 3.7 2 1 2 4 4 4 3 Protein of unknown function, DUF624 FxsA PF04186.13 gi|336477385|ref|YP_004616526.1| - 0.48 10.6 12.5 0.34 11.0 4.0 2.4 2 1 0 2 2 2 0 FxsA cytoplasmic membrane protein Pilin_N PF07790.11 gi|336477386|ref|YP_004616527.1| - 2.3 9.2 9.1 7.6 7.5 9.1 2.1 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|336477387|ref|YP_004616528.1| - 0.0082 17.1 0.8 0.019 15.9 0.8 1.7 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal O_anti_polymase PF01901.16 gi|336477387|ref|YP_004616528.1| - 0.019 14.3 0.1 0.029 13.6 0.1 1.3 1 0 0 1 1 1 0 Putative O-antigen polymerase Cu_amine_oxidN1 PF07833.11 gi|336477387|ref|YP_004616528.1| - 0.03 14.8 0.1 1.4 9.4 0.0 3.1 1 1 2 3 3 3 0 Copper amine oxidase N-terminal domain Cadherin-like PF12733.7 gi|336477388|ref|YP_004616529.1| - 0.0081 16.7 0.2 0.69 10.5 0.0 2.3 1 1 1 2 2 2 2 Cadherin-like beta sandwich domain FLILHELTA PF10306.9 gi|336477388|ref|YP_004616529.1| - 0.074 13.5 0.0 0.12 12.8 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein FLILHELTA Amelotin PF15757.5 gi|336477390|ref|YP_004616531.1| - 0.1 12.2 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Amelotin ABA_WDS PF02496.16 gi|336477390|ref|YP_004616531.1| - 0.14 12.6 0.2 0.29 11.6 0.2 1.4 1 0 0 1 1 1 0 ABA/WDS induced protein Arch_fla_DE PF04659.13 gi|336477392|ref|YP_004616533.1| - 2.1e-28 98.0 0.1 5.9e-28 96.6 0.1 1.9 1 0 0 1 1 1 1 Archaeal flagella protein TMF_TATA_bd PF12325.8 gi|336477392|ref|YP_004616533.1| - 0.00056 20.1 19.2 0.012 15.8 3.2 3.5 1 1 2 3 3 3 2 TATA element modulatory factor 1 TATA binding DHC_N1 PF08385.12 gi|336477392|ref|YP_004616533.1| - 0.0018 17.0 8.9 0.0021 16.8 5.5 2.1 1 1 1 2 2 2 1 Dynein heavy chain, N-terminal region 1 GAS PF13851.6 gi|336477392|ref|YP_004616533.1| - 0.0026 17.2 16.7 0.0046 16.3 9.3 2.9 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.9 gi|336477392|ref|YP_004616533.1| - 0.0037 17.3 7.0 0.0037 17.3 7.0 4.4 3 1 2 5 5 5 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.9 gi|336477392|ref|YP_004616533.1| - 0.0044 16.2 2.6 0.0044 16.2 2.6 2.4 1 1 2 3 3 3 2 Vacuolar sorting 38 and autophagy-related subunit 14 DUF948 PF06103.11 gi|336477392|ref|YP_004616533.1| - 0.022 15.0 8.5 3.8 7.8 0.2 4.1 2 1 1 4 4 3 0 Bacterial protein of unknown function (DUF948) Tup_N PF08581.10 gi|336477392|ref|YP_004616533.1| - 0.024 14.9 0.7 0.024 14.9 0.7 4.8 3 1 2 5 5 4 0 Tup N-terminal Apolipoprotein PF01442.18 gi|336477392|ref|YP_004616533.1| - 0.03 14.2 7.4 0.91 9.4 7.1 2.8 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Filament PF00038.21 gi|336477392|ref|YP_004616533.1| - 0.043 13.4 20.2 0.19 11.3 11.5 2.6 1 1 1 2 2 2 0 Intermediate filament protein Baculo_PEP_C PF04513.12 gi|336477392|ref|YP_004616533.1| - 0.13 12.3 10.8 0.19 11.8 1.8 2.9 2 1 1 3 3 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus YscO PF07321.12 gi|336477392|ref|YP_004616533.1| - 0.44 10.5 4.6 5.5 6.9 0.3 2.9 2 1 1 3 3 3 0 Type III secretion protein YscO FlaC_arch PF05377.11 gi|336477392|ref|YP_004616533.1| - 0.5 10.8 28.5 0.052 14.0 3.1 5.6 3 1 1 5 5 4 0 Flagella accessory protein C (FlaC) RPW8 PF05659.11 gi|336477392|ref|YP_004616533.1| - 0.57 9.9 11.6 0.38 10.4 0.9 3.8 2 1 2 4 4 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Spc7 PF08317.11 gi|336477392|ref|YP_004616533.1| - 0.83 8.5 24.3 0.039 12.9 7.4 3.3 2 1 1 3 3 3 0 Spc7 kinetochore protein CCDC-167 PF15188.6 gi|336477392|ref|YP_004616533.1| - 1.2 9.5 17.7 1.9 8.9 1.8 4.3 2 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 T3SSipB PF16535.5 gi|336477392|ref|YP_004616533.1| - 1.5 9.3 4.2 1.9 8.9 0.2 2.5 2 0 0 2 2 2 0 Type III cell invasion protein SipB SlyX PF04102.12 gi|336477392|ref|YP_004616533.1| - 1.6 9.4 9.6 0.26 11.9 0.3 4.0 3 1 1 5 5 4 0 SlyX DUF489 PF04356.12 gi|336477392|ref|YP_004616533.1| - 2.3 8.2 8.3 1.5 8.8 3.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF489) DUF1664 PF07889.12 gi|336477392|ref|YP_004616533.1| - 2.3 8.3 21.4 1.8 8.6 2.6 4.6 3 1 2 5 5 3 0 Protein of unknown function (DUF1664) CREPT PF16566.5 gi|336477392|ref|YP_004616533.1| - 3.6 7.7 9.9 4.7 7.4 2.6 3.3 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour NPV_P10 PF05531.12 gi|336477392|ref|YP_004616533.1| - 5.4 7.5 12.6 13 6.3 2.4 4.7 4 1 0 4 4 3 0 Nucleopolyhedrovirus P10 protein TPR_MLP1_2 PF07926.12 gi|336477392|ref|YP_004616533.1| - 5.9 7.0 14.0 1.6 8.8 4.4 3.8 1 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.9 gi|336477392|ref|YP_004616533.1| - 5.9 7.3 22.2 6.8 7.1 1.5 5.4 1 1 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DAP_epimerase PF01678.19 gi|336477393|ref|YP_004616534.1| - 5.6e-56 187.9 3.2 2.7e-30 105.0 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|336477393|ref|YP_004616534.1| - 0.00046 19.3 0.1 0.01 15.0 0.0 2.1 2 0 0 2 2 2 2 Proline racemase ATP-synt_D PF01813.17 gi|336477394|ref|YP_004616535.1| - 9.4e-55 185.5 9.2 1e-54 185.3 9.2 1.0 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.25 gi|336477395|ref|YP_004616536.1| - 1.1e-64 218.1 0.0 1.4e-64 217.7 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|336477395|ref|YP_004616536.1| - 1.3e-10 41.7 1.0 1.3e-10 41.7 1.0 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|336477395|ref|YP_004616536.1| - 0.00073 19.6 1.1 0.0018 18.3 0.3 2.1 3 0 0 3 3 3 1 HAS barrel domain Phage-MuB_C PF09077.11 gi|336477395|ref|YP_004616536.1| - 0.16 11.9 0.0 0.57 10.1 0.0 1.9 2 0 0 2 2 2 0 Mu B transposition protein, C terminal ATP-synt_ab PF00006.25 gi|336477396|ref|YP_004616537.1| - 5.1e-95 317.2 0.0 8e-95 316.5 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|336477396|ref|YP_004616537.1| - 3.1e-44 149.7 0.1 6.9e-44 148.6 0.1 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|336477396|ref|YP_004616537.1| - 1.7e-15 57.3 2.4 1.7e-15 57.3 2.4 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.22 gi|336477396|ref|YP_004616537.1| - 0.014 15.6 0.6 2.2 8.5 0.1 2.7 2 0 0 2 2 2 0 Peptidase family M23 AAA_22 PF13401.6 gi|336477396|ref|YP_004616537.1| - 0.022 15.0 0.0 0.055 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain RnfC_N PF13375.6 gi|336477396|ref|YP_004616537.1| - 0.023 14.6 1.0 0.39 10.7 0.1 2.4 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain ATP-synt_F PF01990.17 gi|336477397|ref|YP_004616538.1| - 1.1e-16 60.9 0.0 1.2e-16 60.8 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit UPRTase PF14681.6 gi|336477397|ref|YP_004616538.1| - 0.091 12.2 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase vATP-synt_AC39 PF01992.16 gi|336477398|ref|YP_004616539.1| - 6.4e-74 249.4 13.9 7.2e-74 249.3 13.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit MerR-DNA-bind PF09278.11 gi|336477398|ref|YP_004616539.1| - 0.079 13.5 0.1 4.3 8.0 0.0 3.1 3 0 0 3 3 3 0 MerR, DNA binding vATP-synt_E PF01991.18 gi|336477399|ref|YP_004616540.1| - 6e-23 81.3 12.4 4.1e-12 45.9 9.2 2.0 1 1 1 2 2 2 2 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|336477399|ref|YP_004616540.1| - 0.0036 17.7 0.7 0.012 16.1 0.9 1.8 2 0 0 2 2 2 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|336477399|ref|YP_004616540.1| - 0.013 15.6 2.2 0.024 14.7 2.2 1.5 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) DUF4972 PF16342.5 gi|336477399|ref|YP_004616540.1| - 8.8 6.0 8.7 7.6 6.2 0.4 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4972) ATP-synt_C PF00137.21 gi|336477400|ref|YP_004616541.1| - 1.5e-15 57.2 13.7 1.8e-15 57.0 13.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.19 gi|336477401|ref|YP_004616542.1| - 1e-32 113.0 15.8 5.2e-20 71.0 0.0 3.8 4 0 0 4 4 4 3 V-type ATPase 116kDa subunit family FTA4 PF13093.6 gi|336477401|ref|YP_004616542.1| - 0.038 13.9 0.1 0.071 13.0 0.1 1.4 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 YabA PF06156.13 gi|336477401|ref|YP_004616542.1| - 0.04 14.6 0.3 0.35 11.5 0.0 2.2 2 0 0 2 2 2 0 Initiation control protein YabA MerR-DNA-bind PF09278.11 gi|336477401|ref|YP_004616542.1| - 0.041 14.4 3.7 0.95 10.0 1.0 2.6 2 1 1 3 3 3 0 MerR, DNA binding NPV_P10 PF05531.12 gi|336477401|ref|YP_004616542.1| - 0.077 13.5 0.2 6.6 7.3 0.1 2.5 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Tup_N PF08581.10 gi|336477401|ref|YP_004616542.1| - 0.21 11.9 3.3 1.6 9.1 0.1 3.2 3 0 0 3 3 3 0 Tup N-terminal DUF5082 PF16888.5 gi|336477401|ref|YP_004616542.1| - 0.7 10.2 3.6 22 5.3 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) ABC_tran_CTD PF16326.5 gi|336477401|ref|YP_004616542.1| - 0.85 9.9 7.2 3 8.2 0.6 2.7 2 0 0 2 2 2 0 ABC transporter C-terminal domain Jnk-SapK_ap_N PF09744.9 gi|336477401|ref|YP_004616542.1| - 1.1 9.4 5.6 1.4 9.2 1.3 2.5 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Seryl_tRNA_N PF02403.22 gi|336477401|ref|YP_004616542.1| - 5.9 7.2 6.9 9 6.6 1.0 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain V-ATPase_G_2 PF16999.5 gi|336477402|ref|YP_004616543.1| - 1.9e-09 37.9 19.9 2.2e-09 37.7 19.9 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|336477402|ref|YP_004616543.1| - 3e-07 30.6 20.3 8e-05 22.7 15.2 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|336477402|ref|YP_004616543.1| - 0.0007 19.1 20.7 0.02 14.3 11.1 2.9 1 1 2 3 3 3 3 Domain of unknown function (DUF3552) V-ATPase_G PF03179.15 gi|336477402|ref|YP_004616543.1| - 0.00085 19.8 18.0 0.0011 19.5 18.0 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DUF3376 PF11856.8 gi|336477402|ref|YP_004616543.1| - 0.0047 16.0 2.4 0.0053 15.8 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3376) DUF883 PF05957.13 gi|336477402|ref|YP_004616543.1| - 0.037 14.6 13.0 0.23 12.1 9.4 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) HrpE PF06188.12 gi|336477402|ref|YP_004616543.1| - 0.27 11.1 6.0 0.66 9.8 6.0 1.6 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF2229 PF09989.9 gi|336477402|ref|YP_004616543.1| - 2 8.0 4.8 2.7 7.6 4.8 1.3 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) Spore_II_R PF09551.10 gi|336477402|ref|YP_004616543.1| - 2.5 8.6 7.1 4.9 7.6 7.1 1.6 1 1 0 1 1 1 0 Stage II sporulation protein R (spore_II_R) RNA_pol_Rpb4 PF03874.16 gi|336477402|ref|YP_004616543.1| - 4.6 7.6 11.6 53 4.2 11.6 2.0 1 1 0 1 1 1 0 RNA polymerase Rpb4 vATP-synt_E PF01991.18 gi|336477402|ref|YP_004616543.1| - 6 6.2 21.5 9 5.6 14.9 2.1 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit Radical_SAM PF04055.21 gi|336477403|ref|YP_004616544.1| - 1.7e-11 44.7 0.0 2.7e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|336477403|ref|YP_004616544.1| - 1e-07 32.4 0.1 2.9e-07 30.9 0.1 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|336477403|ref|YP_004616544.1| - 0.028 14.7 0.0 0.054 13.8 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Lactamase_B_2 PF12706.7 gi|336477403|ref|YP_004616544.1| - 0.16 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain polyprenyl_synt PF00348.17 gi|336477404|ref|YP_004616545.1| - 7.4e-49 166.1 0.2 9.4e-49 165.8 0.2 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase CcmE PF03100.15 gi|336477405|ref|YP_004616546.1| - 3.8e-16 59.2 0.0 4.2e-16 59.1 0.0 1.0 1 0 0 1 1 1 1 CcmE CBM60 PF16841.5 gi|336477405|ref|YP_004616546.1| - 0.094 13.2 0.0 0.12 12.8 0.0 1.2 1 0 0 1 1 1 0 Ca-dependent carbohydrate-binding module xylan-binding Radical_SAM PF04055.21 gi|336477407|ref|YP_004616548.1| - 3.5e-20 73.1 0.0 1.4e-19 71.1 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|336477407|ref|YP_004616548.1| - 4.6e-09 36.7 0.0 1.1e-08 35.4 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|336477407|ref|YP_004616548.1| - 2.2e-06 27.8 0.0 5.8e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|336477407|ref|YP_004616548.1| - 8.8e-06 26.1 2.8 1.8e-05 25.1 2.8 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain AsnC_trans_reg2 PF17805.1 gi|336477408|ref|YP_004616549.1| - 8.3e-24 83.6 0.0 2.3e-23 82.2 0.0 1.6 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|336477408|ref|YP_004616549.1| - 9.1e-08 31.8 0.4 2.7e-07 30.3 0.4 1.8 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|336477408|ref|YP_004616549.1| - 0.0016 17.9 2.9 0.57 9.8 0.1 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding DUF4423 PF14394.6 gi|336477408|ref|YP_004616549.1| - 0.011 15.4 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_20 PF12840.7 gi|336477408|ref|YP_004616549.1| - 0.049 13.7 0.0 0.073 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|336477408|ref|YP_004616549.1| - 0.051 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain PKD PF00801.20 gi|336477408|ref|YP_004616549.1| - 0.11 12.4 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 PKD domain AsnC_trans_reg2 PF17805.1 gi|336477409|ref|YP_004616550.1| - 2e-32 111.2 0.0 3.3e-32 110.5 0.0 1.3 1 0 0 1 1 1 1 AsnC-like ligand binding domain HisG_C PF08029.11 gi|336477409|ref|YP_004616550.1| - 0.014 15.5 0.1 0.056 13.6 0.0 2.0 2 0 0 2 2 2 0 HisG, C-terminal domain MarR_2 PF12802.7 gi|336477409|ref|YP_004616550.1| - 0.015 15.1 0.0 0.049 13.5 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|336477409|ref|YP_004616550.1| - 0.022 14.7 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|336477409|ref|YP_004616550.1| - 0.043 13.7 0.0 0.51 10.2 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|336477409|ref|YP_004616550.1| - 0.05 13.0 0.0 0.099 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HEPN PF05168.14 gi|336477409|ref|YP_004616550.1| - 0.068 13.3 0.0 0.16 12.1 0.0 1.7 1 1 0 1 1 1 0 HEPN domain PPR PF01535.20 gi|336477409|ref|YP_004616550.1| - 0.074 13.3 0.1 6.3 7.3 0.1 2.5 2 0 0 2 2 2 0 PPR repeat HTH_28 PF13518.6 gi|336477409|ref|YP_004616550.1| - 0.078 13.1 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Aldo_ket_red PF00248.21 gi|336477409|ref|YP_004616550.1| - 0.15 11.2 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Aldo/keto reductase family NAD_binding_7 PF13241.6 gi|336477410|ref|YP_004616551.1| - 3.3e-20 72.4 0.3 7.5e-20 71.3 0.1 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|336477410|ref|YP_004616551.1| - 0.00035 20.0 0.0 0.00076 18.9 0.0 1.5 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central TrkA_N PF02254.18 gi|336477410|ref|YP_004616551.1| - 0.015 15.5 0.2 0.037 14.3 0.2 1.6 1 1 0 1 1 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|336477410|ref|YP_004616551.1| - 0.039 14.2 0.1 0.51 10.6 0.0 2.1 1 1 1 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|336477411|ref|YP_004616552.1| - 8.1e-43 145.8 0.5 8.1e-43 145.8 0.5 2.4 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|336477411|ref|YP_004616552.1| - 1.9e-39 134.8 1.6 3.7e-39 133.8 1.6 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|336477411|ref|YP_004616552.1| - 2.3e-16 60.0 2.1 2.9e-16 59.7 0.6 2.0 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|336477411|ref|YP_004616552.1| - 3.5e-09 37.1 0.2 2.3e-08 34.5 0.1 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|336477411|ref|YP_004616552.1| - 1.1e-06 29.0 0.1 2.7e-06 27.8 0.1 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|336477411|ref|YP_004616552.1| - 1.1e-05 25.6 0.0 2.4e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|336477411|ref|YP_004616552.1| - 2e-05 24.0 0.1 3.6e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|336477411|ref|YP_004616552.1| - 3.2e-05 23.0 0.5 8.8e-05 21.6 0.1 1.8 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family THF_DHG_CYH_C PF02882.19 gi|336477411|ref|YP_004616552.1| - 0.00014 21.2 0.3 1.4 8.2 0.0 3.3 2 1 1 3 3 3 2 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.15 gi|336477411|ref|YP_004616552.1| - 0.00017 21.4 0.2 0.00045 20.1 0.1 1.8 2 0 0 2 2 1 1 DNA / pantothenate metabolism flavoprotein Glu_dehyd_C PF16912.5 gi|336477411|ref|YP_004616552.1| - 0.00019 21.0 0.1 0.00038 20.0 0.1 1.5 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus IlvN PF07991.12 gi|336477411|ref|YP_004616552.1| - 0.00055 19.5 0.0 0.0029 17.2 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 gi|336477411|ref|YP_004616552.1| - 0.0026 18.6 0.4 0.012 16.4 0.0 2.3 3 0 0 3 3 2 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|336477411|ref|YP_004616552.1| - 0.0052 17.1 0.1 0.022 15.0 0.1 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|336477411|ref|YP_004616552.1| - 0.011 15.4 0.1 0.025 14.2 0.1 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|336477411|ref|YP_004616552.1| - 0.017 15.4 2.4 0.03 14.6 0.3 2.6 2 1 0 2 2 2 0 TrkA-N domain Las1 PF04031.13 gi|336477411|ref|YP_004616552.1| - 0.018 15.2 0.1 0.42 10.7 0.0 2.3 2 0 0 2 2 2 0 Las1-like AlaDh_PNT_C PF01262.21 gi|336477411|ref|YP_004616552.1| - 0.022 14.0 0.6 0.056 12.7 0.3 1.8 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain LpxI_N PF17930.1 gi|336477411|ref|YP_004616552.1| - 0.067 13.1 0.2 10 6.0 0.0 2.9 2 0 0 2 2 2 0 LpxI N-terminal domain Hydrolase_6 PF13344.6 gi|336477411|ref|YP_004616552.1| - 0.076 13.1 0.0 0.39 10.9 0.0 2.3 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase ThiF PF00899.21 gi|336477411|ref|YP_004616552.1| - 0.093 12.1 0.5 0.48 9.7 0.2 2.0 2 0 0 2 2 2 0 ThiF family Adhesin_P1_N PF18652.1 gi|336477411|ref|YP_004616552.1| - 0.13 12.3 0.2 0.13 12.3 0.2 2.0 2 0 0 2 2 2 0 Adhesin P1 N-terminal domain Peptidase_M36 PF02128.15 gi|336477411|ref|YP_004616552.1| - 0.17 11.0 0.0 0.25 10.5 0.0 1.1 1 0 0 1 1 1 0 Fungalysin metallopeptidase (M36) ALAD PF00490.21 gi|336477412|ref|YP_004616553.1| - 8e-146 485.2 0.3 9e-146 485.0 0.3 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Aminotran_3 PF00202.21 gi|336477413|ref|YP_004616554.1| - 2.8e-69 233.7 0.0 3.7e-69 233.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Porphobil_deam PF01379.20 gi|336477414|ref|YP_004616555.1| - 1.6e-69 233.5 0.1 2.2e-69 233.1 0.1 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|336477414|ref|YP_004616555.1| - 7.5e-10 39.1 0.1 1.9e-09 37.7 0.1 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.20 gi|336477414|ref|YP_004616555.1| - 0.13 11.7 0.0 0.33 10.3 0.0 1.5 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 DHO_dh PF01180.21 gi|336477415|ref|YP_004616556.1| - 2e-63 214.4 1.2 2.2e-63 214.2 1.2 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|336477415|ref|YP_004616556.1| - 2.3e-11 43.3 0.7 1.7e-06 27.4 0.1 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|336477415|ref|YP_004616556.1| - 1.6e-07 31.1 0.1 2.4e-07 30.5 0.1 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|336477415|ref|YP_004616556.1| - 0.00011 21.7 0.3 0.0029 17.1 0.0 2.8 3 1 0 3 3 3 1 Histidine biosynthesis protein DUF561 PF04481.12 gi|336477415|ref|YP_004616556.1| - 0.00033 19.9 0.6 0.0008 18.6 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF561) G3P_antiterm PF04309.12 gi|336477415|ref|YP_004616556.1| - 0.006 16.0 0.3 5.4 6.4 0.1 3.1 3 0 0 3 3 3 2 Glycerol-3-phosphate responsive antiterminator nlz1 PF12402.8 gi|336477415|ref|YP_004616556.1| - 0.018 15.5 0.1 0.058 13.8 0.0 2.0 2 0 0 2 2 2 0 NocA-like zinc-finger protein 1 IMPDH PF00478.25 gi|336477415|ref|YP_004616556.1| - 0.079 12.0 2.0 0.13 11.2 2.0 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain DHODB_Fe-S_bind PF10418.9 gi|336477416|ref|YP_004616557.1| - 1.9e-09 37.2 6.8 4.2e-09 36.1 6.8 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|336477416|ref|YP_004616557.1| - 0.00053 20.6 0.2 0.0027 18.3 0.2 2.0 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|336477416|ref|YP_004616557.1| - 0.016 15.5 0.0 0.18 12.1 0.0 2.3 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain FmdA_AmdA PF03069.15 gi|336477416|ref|YP_004616557.1| - 0.11 11.4 0.3 0.37 9.6 0.0 1.7 1 1 0 2 2 2 0 Acetamidase/Formamidase family Peptidase_M23 PF01551.22 gi|336477417|ref|YP_004616558.1| - 9.3e-12 45.0 0.0 1.6e-11 44.2 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M23 RnfC_N PF13375.6 gi|336477417|ref|YP_004616558.1| - 0.0057 16.6 0.1 0.41 10.6 0.0 2.3 2 0 0 2 2 2 2 RnfC Barrel sandwich hybrid domain IMP2_C PF18591.1 gi|336477417|ref|YP_004616558.1| - 0.2 11.5 0.0 0.31 11.0 0.0 1.2 1 0 0 1 1 1 0 Immune Mapped Protein 2 (IMP2) C-terminal domain TIR_2 PF13676.6 gi|336477418|ref|YP_004616559.1| - 1.4e-09 38.6 0.0 2.3e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 TIR domain Nuc_deoxyrib_tr PF05014.15 gi|336477418|ref|YP_004616559.1| - 3.4e-05 23.9 0.0 5.1e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase PyrI_C PF02748.15 gi|336477418|ref|YP_004616559.1| - 0.00024 21.0 1.4 0.6 10.1 0.1 2.5 1 1 1 2 2 2 2 Aspartate carbamoyltransferase regulatory chain, metal binding domain DZR PF12773.7 gi|336477418|ref|YP_004616559.1| - 0.01 15.8 0.1 0.019 15.0 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|336477418|ref|YP_004616559.1| - 0.018 14.4 0.7 0.45 10.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|336477418|ref|YP_004616559.1| - 0.023 14.6 1.4 0.12 12.3 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG CpXC PF14353.6 gi|336477418|ref|YP_004616559.1| - 0.032 14.3 2.1 0.15 12.1 0.9 2.3 2 1 1 3 3 3 0 CpXC protein TIR-like PF10137.9 gi|336477418|ref|YP_004616559.1| - 0.043 13.8 0.0 0.086 12.8 0.0 1.5 1 0 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain Mut7-C PF01927.16 gi|336477418|ref|YP_004616559.1| - 0.054 13.6 0.0 0.065 13.3 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-BED PF02892.15 gi|336477418|ref|YP_004616559.1| - 0.058 13.4 0.4 2 8.5 0.0 2.5 3 0 0 3 3 3 0 BED zinc finger DUF3268 PF11672.8 gi|336477418|ref|YP_004616559.1| - 0.082 13.2 0.1 0.16 12.3 0.1 1.5 1 0 0 1 1 1 0 zinc-finger-containing domain Anti-TRAP PF15777.5 gi|336477418|ref|YP_004616559.1| - 0.15 12.0 0.2 1.2 9.2 0.0 2.1 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-Di19 PF05605.12 gi|336477418|ref|YP_004616559.1| - 0.29 11.5 1.8 1.6 9.1 1.8 2.2 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_10 PF16588.5 gi|336477418|ref|YP_004616559.1| - 2.1 8.1 5.1 18 5.1 0.2 2.3 2 0 0 2 2 2 0 C2H2 zinc-finger AAA PF00004.29 gi|336477419|ref|YP_004616560.1| - 8.1e-44 149.3 0.8 3.7e-43 147.1 0.0 2.4 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336477419|ref|YP_004616560.1| - 5.3e-16 58.1 0.0 2e-15 56.3 0.1 2.0 2 0 0 2 2 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|336477419|ref|YP_004616560.1| - 7.8e-06 25.9 0.0 2.5e-05 24.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|336477419|ref|YP_004616560.1| - 4.2e-05 23.4 0.0 0.00011 21.9 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|336477419|ref|YP_004616560.1| - 4.2e-05 24.0 0.1 0.00049 20.5 0.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336477419|ref|YP_004616560.1| - 0.00046 20.5 0.1 0.02 15.2 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|336477419|ref|YP_004616560.1| - 0.00053 20.1 0.0 0.0014 18.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.22 gi|336477419|ref|YP_004616560.1| - 0.0006 20.2 0.0 0.0064 16.9 0.0 2.3 2 0 0 2 2 2 1 RNA helicase Taxilin PF09728.9 gi|336477419|ref|YP_004616560.1| - 0.002 17.3 2.7 0.0032 16.7 2.7 1.2 1 0 0 1 1 1 1 Myosin-like coiled-coil protein AAA_17 PF13207.6 gi|336477419|ref|YP_004616560.1| - 0.0021 18.5 0.0 0.14 12.6 0.0 3.2 3 1 0 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|336477419|ref|YP_004616560.1| - 0.0065 17.0 0.1 0.035 14.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|336477419|ref|YP_004616560.1| - 0.0075 16.3 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|336477419|ref|YP_004616560.1| - 0.0083 15.8 0.0 0.056 13.2 0.0 2.3 3 0 0 3 3 2 1 Sigma-54 interaction domain Leu_zip PF15294.6 gi|336477419|ref|YP_004616560.1| - 0.011 15.3 0.8 0.016 14.7 0.8 1.2 1 0 0 1 1 1 0 Leucine zipper AAA_3 PF07726.11 gi|336477419|ref|YP_004616560.1| - 0.011 15.6 0.0 0.026 14.4 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|336477419|ref|YP_004616560.1| - 0.012 14.9 0.0 0.024 13.9 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|336477419|ref|YP_004616560.1| - 0.012 15.3 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein GrpE PF01025.19 gi|336477419|ref|YP_004616560.1| - 0.019 14.6 0.7 0.062 13.0 0.2 2.0 2 0 0 2 2 2 0 GrpE ABC_tran_CTD PF16326.5 gi|336477419|ref|YP_004616560.1| - 0.022 15.0 1.8 0.06 13.6 1.8 1.7 1 0 0 1 1 1 0 ABC transporter C-terminal domain COG6 PF06419.11 gi|336477419|ref|YP_004616560.1| - 0.025 12.8 2.6 0.038 12.2 2.6 1.2 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 AAA_28 PF13521.6 gi|336477419|ref|YP_004616560.1| - 0.031 14.5 0.0 0.061 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|336477419|ref|YP_004616560.1| - 0.031 13.7 0.1 0.059 12.7 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CPT PF07931.12 gi|336477419|ref|YP_004616560.1| - 0.032 14.1 0.0 0.065 13.1 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein DUF815 PF05673.13 gi|336477419|ref|YP_004616560.1| - 0.034 13.3 0.0 0.066 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|336477419|ref|YP_004616560.1| - 0.037 13.3 0.0 0.073 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.6 gi|336477419|ref|YP_004616560.1| - 0.04 14.0 0.1 0.14 12.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain Prot_ATP_OB_N PF17758.1 gi|336477419|ref|YP_004616560.1| - 0.045 13.4 0.1 0.29 10.8 0.0 2.5 3 0 0 3 3 2 0 Proteasomal ATPase OB N-terminal domain Parvo_NS1 PF01057.17 gi|336477419|ref|YP_004616560.1| - 0.049 12.7 0.1 0.09 11.8 0.1 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_33 PF13671.6 gi|336477419|ref|YP_004616560.1| - 0.057 13.6 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|336477419|ref|YP_004616560.1| - 0.058 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|336477419|ref|YP_004616560.1| - 0.066 12.6 0.4 0.25 10.6 0.0 2.1 3 0 0 3 3 3 0 KaiC Zeta_toxin PF06414.12 gi|336477419|ref|YP_004616560.1| - 0.075 12.3 0.0 0.16 11.2 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin Torsin PF06309.11 gi|336477419|ref|YP_004616560.1| - 0.08 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Torsin NACHT PF05729.12 gi|336477419|ref|YP_004616560.1| - 0.081 12.8 0.1 1.1 9.2 0.1 2.3 1 1 1 2 2 2 0 NACHT domain Prot_ATP_ID_OB PF16450.5 gi|336477419|ref|YP_004616560.1| - 0.1 12.6 0.3 0.28 11.2 0.0 1.9 2 0 0 2 2 1 0 Proteasomal ATPase OB C-terminal domain Spc24 PF08286.11 gi|336477419|ref|YP_004616560.1| - 0.11 12.7 1.8 0.3 11.3 1.8 1.8 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 AAA_7 PF12775.7 gi|336477419|ref|YP_004616560.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_13 PF13166.6 gi|336477419|ref|YP_004616560.1| - 0.12 11.0 1.2 5.1 5.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain Ax_dynein_light PF10211.9 gi|336477419|ref|YP_004616560.1| - 0.13 12.2 2.6 0.22 11.4 2.6 1.3 1 0 0 1 1 1 0 Axonemal dynein light chain DMPK_coil PF08826.10 gi|336477419|ref|YP_004616560.1| - 0.37 10.9 2.6 0.89 9.7 2.6 1.6 1 0 0 1 1 1 0 DMPK coiled coil domain like Penicillinase_R PF03965.16 gi|336477420|ref|YP_004616561.1| - 0.00021 21.6 0.2 0.00021 21.6 0.2 1.9 2 0 0 2 2 2 1 Penicillinase repressor DUF131 PF01998.17 gi|336477421|ref|YP_004616562.1| - 8.6e-13 47.7 7.5 8.6e-13 47.7 7.5 2.0 1 1 1 2 2 2 1 Protein of unknown function DUF131 Phage_holin_3_6 PF07332.11 gi|336477421|ref|YP_004616562.1| - 0.03 14.4 2.8 0.035 14.2 2.8 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|336477421|ref|YP_004616562.1| - 0.44 9.2 5.0 0.48 9.1 5.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF202 PF02656.15 gi|336477421|ref|YP_004616562.1| - 2.6 8.6 6.0 6.9 7.2 6.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF131 PF01998.17 gi|336477422|ref|YP_004616563.1| - 2.4e-22 78.3 0.0 2.4e-22 78.3 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF131 DUF969 PF06149.12 gi|336477422|ref|YP_004616563.1| - 0.0013 18.2 0.2 0.02 14.3 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF969) SOP4 PF17081.5 gi|336477422|ref|YP_004616563.1| - 0.044 13.3 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 Suppressor of PMA 1-7 protein DUF5531 PF17671.1 gi|336477422|ref|YP_004616563.1| - 0.047 13.6 0.0 0.063 13.2 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5531) DUF2207 PF09972.9 gi|336477422|ref|YP_004616563.1| - 0.1 11.4 3.6 0.51 9.0 3.6 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4834 PF16118.5 gi|336477422|ref|YP_004616563.1| - 1.4 9.9 0.0 1.4 9.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4834) EphA2_TM PF14575.6 gi|336477422|ref|YP_004616563.1| - 2.1 9.3 3.9 6.5 7.7 0.0 2.3 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain SdpI PF13630.6 gi|336477422|ref|YP_004616563.1| - 2.4 8.3 12.0 0.83 9.8 1.6 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF3139 PF11337.8 gi|336477422|ref|YP_004616563.1| - 2.5 8.8 6.6 5.5 7.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) Claudin_2 PF13903.6 gi|336477422|ref|YP_004616563.1| - 7.8 6.2 12.7 4.6 6.9 2.2 2.2 1 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction UvrB_inter PF17757.1 gi|336477423|ref|YP_004616564.1| - 3.6e-29 100.8 0.2 2e-28 98.4 0.1 2.4 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 gi|336477423|ref|YP_004616564.1| - 7.8e-23 80.0 2.4 1.7e-22 79.0 2.4 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|336477423|ref|YP_004616564.1| - 2.1e-18 66.7 0.8 2.5e-17 63.2 0.1 2.6 1 1 1 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|336477423|ref|YP_004616564.1| - 3e-12 46.9 2.9 3.4e-11 43.5 0.0 3.4 4 1 0 4 4 4 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|336477423|ref|YP_004616564.1| - 1e-11 44.2 5.4 4.6e-11 42.1 5.4 2.3 1 0 0 1 1 1 1 UvrB/uvrC motif UvrD-helicase PF00580.21 gi|336477423|ref|YP_004616564.1| - 0.00037 20.1 2.4 0.019 14.5 2.3 2.4 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain DEAD PF00270.29 gi|336477423|ref|YP_004616564.1| - 0.00079 19.2 0.0 0.018 14.8 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase PG_binding_4 PF12229.8 gi|336477423|ref|YP_004616564.1| - 0.0037 17.5 6.0 1.7 8.9 0.0 3.7 3 1 0 3 3 3 2 Putative peptidoglycan binding domain AAA_30 PF13604.6 gi|336477423|ref|YP_004616564.1| - 0.0046 16.7 0.0 0.12 12.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|336477423|ref|YP_004616564.1| - 0.011 16.1 0.1 8.6 6.7 0.0 2.9 3 1 0 3 3 3 0 AAA domain DUF87 PF01935.17 gi|336477423|ref|YP_004616564.1| - 0.065 13.3 2.7 0.1 12.7 0.1 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain AAA PF00004.29 gi|336477423|ref|YP_004616564.1| - 0.12 12.8 0.0 5.8 7.4 0.0 2.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|336477423|ref|YP_004616564.1| - 0.13 11.7 0.1 0.34 10.4 0.1 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF4091 PF13320.6 gi|336477423|ref|YP_004616564.1| - 0.14 12.3 0.0 20 5.4 0.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4091) CdvA PF18822.1 gi|336477423|ref|YP_004616564.1| - 1.1 9.1 10.2 0.13 12.1 0.5 3.5 3 0 0 3 3 3 0 CdvA-like coiled-coil domain ABC_tran PF00005.27 gi|336477424|ref|YP_004616565.1| - 7.2e-34 117.2 0.0 1.2e-33 116.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336477424|ref|YP_004616565.1| - 1.5e-10 41.4 0.7 2.8e-05 24.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|336477424|ref|YP_004616565.1| - 1.6e-09 38.3 0.0 3.7e-09 37.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|336477424|ref|YP_004616565.1| - 3.9e-06 27.5 0.0 1.3e-05 25.8 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|336477424|ref|YP_004616565.1| - 1.3e-05 25.1 0.0 0.15 11.7 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|336477424|ref|YP_004616565.1| - 0.00085 19.0 0.2 0.0017 18.1 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|336477424|ref|YP_004616565.1| - 0.0029 18.0 0.3 0.1 13.0 0.2 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|336477424|ref|YP_004616565.1| - 0.0033 17.8 0.0 0.006 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|336477424|ref|YP_004616565.1| - 0.0079 15.7 0.1 0.18 11.2 0.1 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|336477424|ref|YP_004616565.1| - 0.054 13.5 0.1 0.33 11.0 0.1 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|336477424|ref|YP_004616565.1| - 0.055 13.1 0.1 0.13 11.9 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|336477424|ref|YP_004616565.1| - 0.11 12.2 0.1 0.44 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF5350 PF17299.2 gi|336477425|ref|YP_004616566.1| - 4.2e-25 88.0 7.3 4.5e-25 87.9 7.3 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5350) Cpn60_TCP1 PF00118.24 gi|336477427|ref|YP_004616568.1| - 6.1e-184 612.2 19.8 6.9e-184 612.0 19.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_16 PF13191.6 gi|336477428|ref|YP_004616569.1| - 1.6e-12 48.2 0.0 1.4e-09 38.6 0.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|336477428|ref|YP_004616569.1| - 2.9e-08 34.2 0.0 1e-07 32.5 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|336477428|ref|YP_004616569.1| - 5.2e-07 30.0 0.0 1.2e-06 28.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|336477428|ref|YP_004616569.1| - 1.8e-05 24.3 0.1 0.00086 18.9 0.1 2.4 1 1 0 1 1 1 1 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|336477428|ref|YP_004616569.1| - 3.2e-05 23.9 0.1 9.4e-05 22.4 0.0 1.8 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|336477428|ref|YP_004616569.1| - 8.1e-05 22.6 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.26 gi|336477428|ref|YP_004616569.1| - 0.00024 20.8 0.0 0.00048 19.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain Cdc6_C PF09079.11 gi|336477428|ref|YP_004616569.1| - 0.00026 20.9 0.0 0.0007 19.5 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain IstB_IS21 PF01695.17 gi|336477428|ref|YP_004616569.1| - 0.00029 20.6 0.0 0.04 13.6 0.0 2.6 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_11 PF13086.6 gi|336477428|ref|YP_004616569.1| - 0.00035 20.5 0.0 0.00058 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|336477428|ref|YP_004616569.1| - 0.00045 19.5 0.0 0.00073 18.8 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DUF2075 PF09848.9 gi|336477428|ref|YP_004616569.1| - 0.0009 18.6 0.0 0.0012 18.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|336477428|ref|YP_004616569.1| - 0.0016 17.7 0.0 0.0034 16.7 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.15 gi|336477428|ref|YP_004616569.1| - 0.0027 17.6 0.1 0.024 14.6 0.0 2.5 3 1 0 3 3 3 1 NTPase T2SSE PF00437.20 gi|336477428|ref|YP_004616569.1| - 0.0032 16.6 0.0 0.005 15.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein RuvB_N PF05496.12 gi|336477428|ref|YP_004616569.1| - 0.0049 16.6 0.0 0.012 15.4 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|336477428|ref|YP_004616569.1| - 0.0067 16.5 0.1 0.025 14.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|336477428|ref|YP_004616569.1| - 0.0076 16.0 0.0 0.016 14.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.6 gi|336477428|ref|YP_004616569.1| - 0.0094 16.5 0.3 0.026 15.0 0.0 1.9 2 1 0 2 2 1 1 AAA domain Rad17 PF03215.15 gi|336477428|ref|YP_004616569.1| - 0.0097 15.8 0.2 0.052 13.5 0.0 2.3 2 1 1 3 3 3 1 Rad17 P-loop domain DUF4145 PF13643.6 gi|336477428|ref|YP_004616569.1| - 0.012 15.7 0.0 0.047 13.8 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4145) AAA_19 PF13245.6 gi|336477428|ref|YP_004616569.1| - 0.017 15.5 0.0 0.054 13.8 0.0 1.8 2 0 0 2 2 1 0 AAA domain TniB PF05621.11 gi|336477428|ref|YP_004616569.1| - 0.022 14.2 0.0 0.062 12.7 0.0 1.8 2 1 0 2 2 1 0 Bacterial TniB protein CbiA PF01656.23 gi|336477428|ref|YP_004616569.1| - 0.022 14.8 0.0 0.034 14.2 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.6 gi|336477428|ref|YP_004616569.1| - 0.027 14.0 0.1 0.17 11.4 0.0 2.2 3 0 0 3 3 3 0 AAA domain TIP49_C PF17856.1 gi|336477428|ref|YP_004616569.1| - 0.036 14.2 0.1 0.085 13.0 0.1 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain RecA PF00154.21 gi|336477428|ref|YP_004616569.1| - 0.04 13.4 0.0 0.059 12.8 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein ResIII PF04851.15 gi|336477428|ref|YP_004616569.1| - 0.048 13.7 0.0 0.14 12.2 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.22 gi|336477428|ref|YP_004616569.1| - 0.053 13.9 0.0 0.17 12.3 0.0 1.9 1 0 0 1 1 1 0 RNA helicase ATPase PF06745.13 gi|336477428|ref|YP_004616569.1| - 0.057 12.8 0.4 1.4 8.2 0.0 2.5 1 1 2 3 3 3 0 KaiC TIP49 PF06068.13 gi|336477428|ref|YP_004616569.1| - 0.066 12.4 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain KAP_NTPase PF07693.14 gi|336477428|ref|YP_004616569.1| - 0.081 12.1 0.2 0.32 10.2 0.0 1.7 1 1 1 2 2 2 0 KAP family P-loop domain AAA_5 PF07728.14 gi|336477428|ref|YP_004616569.1| - 0.1 12.6 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|336477428|ref|YP_004616569.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|336477428|ref|YP_004616569.1| - 0.15 11.7 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PPR_2 PF13041.6 gi|336477428|ref|YP_004616569.1| - 0.16 12.2 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 PPR repeat family FdhD-NarQ PF02634.15 gi|336477429|ref|YP_004616570.1| - 2.1e-50 171.6 0.0 2.5e-50 171.4 0.0 1.1 1 0 0 1 1 1 1 FdhD/NarQ family Zn_protease PF05618.11 gi|336477430|ref|YP_004616571.1| - 1.3e-11 44.5 0.1 5.7e-11 42.4 0.1 1.8 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease Pep_deformylase PF01327.21 gi|336477430|ref|YP_004616571.1| - 6.7e-05 22.5 0.4 0.00045 19.8 0.4 2.0 1 1 0 1 1 1 1 Polypeptide deformylase RolB_RolC PF02027.17 gi|336477430|ref|YP_004616571.1| - 0.13 11.9 0.1 0.56 9.8 0.0 1.8 2 0 0 2 2 2 0 RolB/RolC glucosidase family CDI PF02234.19 gi|336477430|ref|YP_004616571.1| - 0.14 12.3 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor Aminotran_5 PF00266.19 gi|336477431|ref|YP_004616572.1| - 1.5e-128 428.9 0.0 1.7e-128 428.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|336477431|ref|YP_004616572.1| - 2.2e-11 43.7 0.1 3.4e-11 43.1 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|336477431|ref|YP_004616572.1| - 1.5e-08 33.6 0.0 2.3e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|336477431|ref|YP_004616572.1| - 0.0002 20.8 0.0 0.00023 20.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 gi|336477431|ref|YP_004616572.1| - 0.051 12.3 0.0 0.081 11.6 0.0 1.3 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Alpha-amylase PF00128.24 gi|336477431|ref|YP_004616572.1| - 0.18 11.3 0.7 0.31 10.6 0.0 1.6 2 0 0 2 2 2 0 Alpha amylase, catalytic domain YcaO PF02624.16 gi|336477433|ref|YP_004616574.1| - 3.5e-87 292.7 0.0 1.3e-86 290.8 0.0 1.7 2 0 0 2 2 2 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding TfuA PF07812.12 gi|336477434|ref|YP_004616575.1| - 2e-45 153.4 0.3 4.2e-45 152.3 0.1 1.6 2 0 0 2 2 2 1 TfuA-like protein Palm_thioest PF02089.15 gi|336477434|ref|YP_004616575.1| - 0.19 11.6 0.1 0.54 10.1 0.0 1.6 1 1 1 2 2 2 0 Palmitoyl protein thioesterase DUF169 PF02596.15 gi|336477435|ref|YP_004616576.1| - 1e-61 208.5 0.0 1.1e-61 208.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Fe_dep_repr_C PF02742.15 gi|336477436|ref|YP_004616577.1| - 1.8e-17 63.2 0.0 2.9e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|336477436|ref|YP_004616577.1| - 3.8e-13 49.4 0.0 5.6e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|336477436|ref|YP_004616577.1| - 9.9e-06 25.4 0.0 3.5e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|336477436|ref|YP_004616577.1| - 0.0001 22.1 0.0 0.00036 20.3 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|336477436|ref|YP_004616577.1| - 0.0001 22.2 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_6 PF01418.17 gi|336477436|ref|YP_004616577.1| - 0.00046 20.1 0.0 0.99 9.4 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain, rpiR family HTH_IclR PF09339.10 gi|336477436|ref|YP_004616577.1| - 0.0016 18.2 0.0 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|336477436|ref|YP_004616577.1| - 0.002 18.0 0.0 0.0051 16.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|336477436|ref|YP_004616577.1| - 0.0071 16.7 0.0 0.014 15.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 gi|336477436|ref|YP_004616577.1| - 0.0086 15.6 0.0 0.027 14.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|336477436|ref|YP_004616577.1| - 0.0086 16.0 0.0 0.018 15.0 0.0 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|336477436|ref|YP_004616577.1| - 0.014 15.2 0.1 0.44 10.4 0.0 2.5 2 1 0 2 2 2 0 Homeodomain-like domain HTH_27 PF13463.6 gi|336477436|ref|YP_004616577.1| - 0.033 14.7 0.0 0.1 13.1 0.0 1.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain GntR PF00392.21 gi|336477436|ref|YP_004616577.1| - 0.043 13.5 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|336477436|ref|YP_004616577.1| - 0.066 13.2 0.0 0.24 11.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix ANT PF03374.14 gi|336477436|ref|YP_004616577.1| - 0.091 13.1 0.0 0.25 11.7 0.0 1.7 1 1 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_DeoR PF08220.12 gi|336477436|ref|YP_004616577.1| - 0.091 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HxlR PF01638.17 gi|336477436|ref|YP_004616577.1| - 0.16 11.8 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix NucS PF01939.16 gi|336477437|ref|YP_004616578.1| - 6.7e-06 25.6 1.2 9.1e-06 25.2 0.1 1.6 2 0 0 2 2 2 1 Endonuclease NucS ABC_transp_aux PF09822.9 gi|336477437|ref|YP_004616578.1| - 0.00049 19.7 0.3 0.00066 19.2 0.3 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system PDDEXK_9 PF08011.11 gi|336477437|ref|YP_004616578.1| - 0.011 15.7 0.1 0.024 14.5 0.1 1.6 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily AAA_32 PF13654.6 gi|336477437|ref|YP_004616578.1| - 0.035 12.9 0.0 0.047 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF836 PF05768.14 gi|336477437|ref|YP_004616578.1| - 1.9 8.9 8.4 0.57 10.6 0.4 3.1 2 2 1 3 3 3 0 Glutaredoxin-like domain (DUF836) Ammonium_transp PF00909.21 gi|336477438|ref|YP_004616579.1| - 1.1e-32 113.2 28.5 1.8e-32 112.5 28.5 1.3 1 0 0 1 1 1 1 Ammonium Transporter Family MtmB PF05369.12 gi|336477439|ref|YP_004616580.1| - 1.2e-226 752.7 1.5 1.4e-226 752.6 1.5 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding_2 PF02607.17 gi|336477440|ref|YP_004616581.1| - 8.1e-20 71.0 0.4 2.1e-19 69.7 0.4 1.8 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.19 gi|336477440|ref|YP_004616581.1| - 5.5e-17 61.9 0.5 8.5e-17 61.3 0.5 1.2 1 0 0 1 1 1 1 B12 binding domain Ssl1 PF04056.14 gi|336477440|ref|YP_004616581.1| - 0.033 14.0 0.0 0.048 13.5 0.0 1.4 1 0 0 1 1 1 0 Ssl1-like DUF5633 PF18656.1 gi|336477440|ref|YP_004616581.1| - 1.2 9.0 4.3 4.4 7.3 3.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5633) AmiS_UreI PF02293.15 gi|336477441|ref|YP_004616582.1| - 0.0014 18.7 19.2 0.0021 18.1 19.2 1.4 1 1 0 1 1 1 1 AmiS/UreI family transporter MtmB PF05369.12 gi|336477442|ref|YP_004616583.1| - 3.8e-227 754.4 1.5 4.3e-227 754.2 1.5 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding_2 PF02607.17 gi|336477443|ref|YP_004616584.1| - 8e-20 71.1 0.3 1.9e-19 69.9 0.3 1.7 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.19 gi|336477443|ref|YP_004616584.1| - 5.1e-17 62.0 0.5 7.8e-17 61.4 0.5 1.2 1 0 0 1 1 1 1 B12 binding domain Ssl1 PF04056.14 gi|336477443|ref|YP_004616584.1| - 0.032 14.1 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 Ssl1-like DUF5633 PF18656.1 gi|336477443|ref|YP_004616584.1| - 1.2 9.1 4.3 4.2 7.3 3.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5633) DUF1724 PF08350.10 gi|336477444|ref|YP_004616585.1| - 8e-25 86.8 0.3 1.7e-24 85.7 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.6 gi|336477444|ref|YP_004616585.1| - 0.00018 21.4 0.1 0.00036 20.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|336477444|ref|YP_004616585.1| - 0.07 13.2 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|336477444|ref|YP_004616585.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF1724 PF08350.10 gi|336477445|ref|YP_004616586.1| - 3.7e-20 71.8 0.1 6.4e-20 71.1 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HemN_C PF06969.16 gi|336477445|ref|YP_004616586.1| - 0.05 13.7 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain HTH_5 PF01022.20 gi|336477445|ref|YP_004616586.1| - 0.084 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|336477445|ref|YP_004616586.1| - 0.17 11.9 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain HisKA_2 PF07568.12 gi|336477446|ref|YP_004616587.1| - 1.4e-30 105.2 1.2 3.8e-30 103.8 1.2 1.8 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 gi|336477446|ref|YP_004616587.1| - 4.2e-22 79.1 2.8 6.9e-22 78.4 1.7 1.9 2 0 0 2 2 2 1 Cache domain PAS_3 PF08447.12 gi|336477446|ref|YP_004616587.1| - 8.4e-16 58.0 0.3 5.5e-14 52.2 0.3 2.9 1 1 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|336477446|ref|YP_004616587.1| - 3.7e-10 40.3 1.4 8.4e-10 39.1 0.6 2.1 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|336477446|ref|YP_004616587.1| - 7e-07 29.2 0.0 1.4e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|336477446|ref|YP_004616587.1| - 4e-06 26.8 0.2 1.8e-05 24.7 0.2 2.2 1 1 0 1 1 1 1 PAS fold HWE_HK PF07536.14 gi|336477446|ref|YP_004616587.1| - 0.0001 23.0 0.1 0.00023 21.8 0.1 1.6 1 0 0 1 1 1 1 HWE histidine kinase PAS_9 PF13426.7 gi|336477446|ref|YP_004616587.1| - 0.035 14.4 0.2 0.62 10.3 0.2 2.9 2 0 0 2 2 2 0 PAS domain HATPase_c_3 PF13589.6 gi|336477446|ref|YP_004616587.1| - 0.15 11.9 1.1 1.7 8.5 0.1 2.6 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|336477447|ref|YP_004616588.1| - 1.8e-24 86.1 0.8 2.1e-24 85.8 0.8 1.1 1 0 0 1 1 1 1 Response regulator receiver domain FGE-sulfatase PF03781.16 gi|336477448|ref|YP_004616589.1| - 8.4e-52 176.3 5.7 5.4e-51 173.7 5.7 1.9 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DUF1566 PF07603.11 gi|336477448|ref|YP_004616589.1| - 0.14 12.5 3.9 0.31 11.4 3.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1566) Methyltransf_25 PF13649.6 gi|336477449|ref|YP_004616590.1| - 3e-19 69.5 0.0 7.3e-19 68.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336477449|ref|YP_004616590.1| - 7.4e-18 65.0 0.0 1.2e-17 64.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336477449|ref|YP_004616590.1| - 3.9e-14 52.7 0.0 8.3e-14 51.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|336477449|ref|YP_004616590.1| - 3.5e-08 33.1 0.0 6.2e-08 32.3 0.0 1.4 2 0 0 2 2 2 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|336477449|ref|YP_004616590.1| - 5.9e-08 32.7 0.0 7.8e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336477449|ref|YP_004616590.1| - 1.1e-07 32.5 0.0 2.1e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336477449|ref|YP_004616590.1| - 1.6e-05 24.4 0.0 2.5e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|336477449|ref|YP_004616590.1| - 4e-05 23.6 0.0 0.0002 21.3 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase DUF938 PF06080.12 gi|336477449|ref|YP_004616590.1| - 0.00023 21.0 0.0 0.00031 20.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF938) TPMT PF05724.11 gi|336477449|ref|YP_004616590.1| - 0.0031 17.2 0.0 0.0047 16.6 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_24 PF13578.6 gi|336477449|ref|YP_004616590.1| - 0.028 15.4 0.0 0.046 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|336477449|ref|YP_004616590.1| - 0.069 12.7 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|336477449|ref|YP_004616590.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Rubrerythrin PF02915.17 gi|336477450|ref|YP_004616591.1| - 9.2e-27 94.1 8.5 1.2e-25 90.5 8.5 2.0 1 1 0 1 1 1 1 Rubrerythrin RecR PF02132.15 gi|336477450|ref|YP_004616591.1| - 0.003 17.1 0.7 0.0062 16.1 0.7 1.5 1 0 0 1 1 1 1 RecR protein Ferritin PF00210.24 gi|336477450|ref|YP_004616591.1| - 0.0047 16.9 4.2 0.032 14.2 4.2 2.2 1 1 0 1 1 1 1 Ferritin-like domain DZR PF12773.7 gi|336477450|ref|YP_004616591.1| - 0.0054 16.7 0.5 0.0083 16.1 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|336477450|ref|YP_004616591.1| - 0.0064 16.2 1.6 0.011 15.4 1.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DUF2492 PF10678.9 gi|336477450|ref|YP_004616591.1| - 0.011 16.0 0.3 0.37 11.1 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2492) zinc_ribbon_15 PF17032.5 gi|336477450|ref|YP_004616591.1| - 0.014 16.1 0.3 0.024 15.4 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbon family Haem_oxygenas_2 PF14518.6 gi|336477450|ref|YP_004616591.1| - 0.022 14.5 0.2 4.5 7.0 0.4 2.1 2 0 0 2 2 2 0 Iron-containing redox enzyme Zn-ribbon_8 PF09723.10 gi|336477450|ref|YP_004616591.1| - 0.031 14.4 1.2 0.094 12.9 1.2 1.8 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|336477450|ref|YP_004616591.1| - 0.05 13.6 1.0 0.098 12.7 0.9 1.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|336477450|ref|YP_004616591.1| - 0.066 13.1 0.4 0.099 12.5 0.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Nudix_N_2 PF14803.6 gi|336477450|ref|YP_004616591.1| - 0.071 13.0 0.7 0.98 9.4 0.7 2.3 1 1 1 2 2 2 0 Nudix N-terminal ATP-sulfurylase PF01747.17 gi|336477450|ref|YP_004616591.1| - 0.075 12.5 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 ATP-sulfurylase TF_Zn_Ribbon PF08271.12 gi|336477450|ref|YP_004616591.1| - 0.11 12.0 6.6 0.69 9.5 1.5 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-P11 PF03854.14 gi|336477450|ref|YP_004616591.1| - 0.12 12.1 0.2 0.21 11.3 0.2 1.3 1 0 0 1 1 1 0 P-11 zinc finger Prok-RING_1 PF14446.6 gi|336477450|ref|YP_004616591.1| - 0.22 11.4 2.0 0.45 10.5 2.0 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Rubredoxin PF00301.20 gi|336477450|ref|YP_004616591.1| - 0.52 10.4 5.3 0.38 10.8 0.6 2.2 1 1 1 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.6 gi|336477450|ref|YP_004616591.1| - 0.59 9.6 5.4 3.6 7.1 0.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-Di19 PF05605.12 gi|336477450|ref|YP_004616591.1| - 0.85 10.0 4.5 3 8.2 0.3 2.4 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Desulfoferrod_N PF06397.12 gi|336477450|ref|YP_004616591.1| - 1.9 8.2 7.6 0.15 11.7 1.8 2.0 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Acetyltransf_1 PF00583.25 gi|336477451|ref|YP_004616592.1| - 1.3e-10 41.5 0.0 2.1e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336477451|ref|YP_004616592.1| - 0.00033 21.0 0.0 0.00073 19.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336477451|ref|YP_004616592.1| - 0.0023 17.9 0.0 0.0037 17.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336477451|ref|YP_004616592.1| - 0.019 14.9 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_4 PF13420.7 gi|336477451|ref|YP_004616592.1| - 0.024 14.8 0.0 0.041 14.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336477451|ref|YP_004616592.1| - 0.04 14.0 0.0 0.071 13.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase OrfB_Zn_ribbon PF07282.11 gi|336477452|ref|YP_004616593.1| - 0.006 16.5 0.9 0.0071 16.3 0.9 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_6 PF14599.6 gi|336477452|ref|YP_004616593.1| - 0.08 13.0 1.6 0.37 10.8 1.6 1.9 1 1 1 2 2 2 0 Zinc-ribbon CxxCxxCC PF03692.15 gi|336477453|ref|YP_004616594.1| - 5.2e-10 39.9 3.7 1e-09 38.9 2.9 1.9 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Radical_SAM PF04055.21 gi|336477454|ref|YP_004616595.1| - 2.1e-21 77.0 0.0 1.4e-20 74.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|336477454|ref|YP_004616595.1| - 3.9e-10 39.8 0.0 8.6e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain Peptidase_M50 PF02163.22 gi|336477455|ref|YP_004616596.1| - 6e-11 42.1 10.8 1.1e-06 28.1 0.4 2.8 1 1 1 2 2 2 2 Peptidase family M50 PRA1 PF03208.19 gi|336477455|ref|YP_004616596.1| - 0.2 11.3 2.9 0.49 10.0 1.1 2.4 2 0 0 2 2 2 0 PRA1 family protein DUF126 PF01989.16 gi|336477456|ref|YP_004616597.1| - 2.6e-36 123.3 0.1 3.5e-36 122.8 0.1 1.2 1 0 0 1 1 1 1 Aconitase X swivel domain DUF521 PF04412.13 gi|336477457|ref|YP_004616598.1| - 1e-159 531.6 0.1 1.2e-159 531.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF4919 PF16266.5 gi|336477457|ref|YP_004616598.1| - 0.064 13.2 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4919) UbiD PF01977.16 gi|336477458|ref|YP_004616599.1| - 6.4e-117 390.8 2.8 7.2e-117 390.7 2.8 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HTH_Crp_2 PF13545.6 gi|336477458|ref|YP_004616599.1| - 0.054 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DJ-1_PfpI PF01965.24 gi|336477459|ref|YP_004616600.1| - 2.4e-53 180.3 0.0 2.7e-53 180.1 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|336477459|ref|YP_004616600.1| - 0.00024 20.8 0.0 0.0046 16.7 0.0 2.1 1 1 1 2 2 2 1 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|336477459|ref|YP_004616600.1| - 0.017 14.7 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|336477459|ref|YP_004616600.1| - 0.054 13.3 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferase class-I GATase_5 PF13507.6 gi|336477459|ref|YP_004616600.1| - 0.059 12.4 0.0 0.085 11.9 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Prismane PF03063.20 gi|336477462|ref|YP_004616603.1| - 5.3e-173 576.4 0.0 5.9e-173 576.2 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family HxlR PF01638.17 gi|336477463|ref|YP_004616604.1| - 1e-24 86.2 0.4 1.3e-24 85.9 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|336477463|ref|YP_004616604.1| - 1.1e-05 25.6 0.1 1.4e-05 25.2 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|336477463|ref|YP_004616604.1| - 1.5e-05 24.8 0.0 2.4e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|336477463|ref|YP_004616604.1| - 0.00049 20.1 0.1 0.00075 19.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2513 PF10711.9 gi|336477463|ref|YP_004616604.1| - 0.0019 18.5 0.1 0.0023 18.2 0.1 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) DUF505 PF04458.12 gi|336477463|ref|YP_004616604.1| - 0.011 14.2 0.1 0.012 14.0 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Replic_Relax PF13814.6 gi|336477463|ref|YP_004616604.1| - 0.026 14.6 0.0 0.029 14.4 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation MarR_2 PF12802.7 gi|336477463|ref|YP_004616604.1| - 0.06 13.2 0.0 0.086 12.7 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.10 gi|336477463|ref|YP_004616604.1| - 0.063 13.2 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|336477463|ref|YP_004616604.1| - 0.084 12.8 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|336477463|ref|YP_004616604.1| - 0.1 12.6 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Flavodoxin_1 PF00258.25 gi|336477464|ref|YP_004616605.1| - 7.7e-10 39.1 0.0 9.9e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|336477464|ref|YP_004616605.1| - 8.9e-07 29.2 0.0 1.1e-06 29.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.15 gi|336477464|ref|YP_004616605.1| - 0.00088 19.0 0.2 0.0056 16.4 0.1 1.9 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|336477464|ref|YP_004616605.1| - 0.0029 17.3 0.0 0.0036 17.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Putative_PNPOx PF01243.20 gi|336477465|ref|YP_004616606.1| - 7.4e-12 45.3 0.0 9.6e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase ADP_ribosyl_GH PF03747.14 gi|336477466|ref|YP_004616607.1| - 8.5e-68 229.2 0.0 9.8e-68 229.0 0.0 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase FMN_red PF03358.15 gi|336477467|ref|YP_004616608.1| - 4.5e-10 39.5 0.0 5.7e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase AIM24 PF01987.17 gi|336477468|ref|YP_004616609.1| - 4.2e-35 121.4 0.4 4.8e-35 121.2 0.4 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 HisKA_2 PF07568.12 gi|336477469|ref|YP_004616610.1| - 9.5e-32 108.9 2.2 2.2e-31 107.7 2.2 1.7 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.7 gi|336477469|ref|YP_004616610.1| - 7.5e-16 58.3 0.1 1.6e-15 57.2 0.1 1.6 1 0 0 1 1 1 1 PAS domain HisKA_7TM PF16927.5 gi|336477469|ref|YP_004616610.1| - 5.5e-15 56.0 29.5 7.6e-15 55.5 29.5 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS PF00989.25 gi|336477469|ref|YP_004616610.1| - 1.9e-10 40.7 0.0 4.8e-10 39.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|336477469|ref|YP_004616610.1| - 1.5e-09 37.6 0.0 3.6e-09 36.4 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.26 gi|336477469|ref|YP_004616610.1| - 1.5e-08 35.1 0.8 1.2e-07 32.2 0.2 2.5 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|336477469|ref|YP_004616610.1| - 5.2e-08 33.1 0.0 1.6e-07 31.5 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|336477469|ref|YP_004616610.1| - 7.3e-07 29.4 0.0 2.6e-06 27.6 0.0 1.9 1 1 0 1 1 1 1 PAS fold HWE_HK PF07536.14 gi|336477469|ref|YP_004616610.1| - 1.2e-06 29.2 0.3 2.1e-06 28.3 0.3 1.4 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|336477469|ref|YP_004616610.1| - 0.00038 20.4 0.0 0.00081 19.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|336477469|ref|YP_004616610.1| - 0.01 15.6 0.7 0.033 13.9 0.7 1.9 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_10 PF13596.6 gi|336477469|ref|YP_004616610.1| - 0.022 15.3 0.4 0.092 13.4 0.1 2.2 2 1 0 2 2 2 0 PAS domain DUF760 PF05542.11 gi|336477469|ref|YP_004616610.1| - 0.033 14.5 1.6 15 6.1 1.3 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF760) YtpI PF14007.6 gi|336477469|ref|YP_004616610.1| - 0.065 13.4 0.4 0.065 13.4 0.4 2.6 2 0 0 2 2 2 0 YtpI-like protein DUF2023 PF09633.10 gi|336477470|ref|YP_004616611.1| - 4.8e-42 142.2 0.8 5.9e-42 141.9 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2023) Ala_racemase_N PF01168.20 gi|336477471|ref|YP_004616612.1| - 2.2e-26 92.9 0.0 2.6e-26 92.6 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain DUF2099 PF09872.9 gi|336477471|ref|YP_004616612.1| - 0.042 13.0 0.8 0.061 12.5 0.4 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2099) PFK PF00365.20 gi|336477471|ref|YP_004616612.1| - 0.094 12.0 0.1 0.15 11.4 0.1 1.3 1 0 0 1 1 1 0 Phosphofructokinase Uteroglobin PF01099.17 gi|336477471|ref|YP_004616612.1| - 0.13 12.7 0.3 0.45 10.9 0.0 2.0 2 0 0 2 2 2 0 Uteroglobin family DUF2073 PF09846.9 gi|336477471|ref|YP_004616612.1| - 0.2 11.5 1.9 0.37 10.7 0.8 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2073) Cas_Cas2CT1978 PF09707.10 gi|336477472|ref|YP_004616613.1| - 1.6e-32 111.4 0.1 1.8e-32 111.3 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas2CT1978) Cas_Cas1 PF01867.16 gi|336477473|ref|YP_004616614.1| - 2.9e-13 49.6 0.0 4.1e-09 36.0 0.0 2.1 1 1 1 2 2 2 2 CRISPR associated protein Cas1 CRISPR_assoc PF08798.11 gi|336477474|ref|YP_004616615.1| - 6e-50 170.5 0.0 6.7e-50 170.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas_Cas5d PF09704.10 gi|336477475|ref|YP_004616616.1| - 9.8e-42 143.3 0.0 1.1e-41 143.1 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_CT1975 PF09344.10 gi|336477476|ref|YP_004616617.1| - 5.2e-98 328.9 0.2 7.6e-98 328.3 0.2 1.2 1 0 0 1 1 1 1 CT1975-like protein Cas_Cas7 PF05107.12 gi|336477476|ref|YP_004616617.1| - 0.0043 16.7 0.4 0.0094 15.5 0.4 1.7 1 1 0 1 1 1 1 CRISPR-associated protein Cas7 RST PF12174.8 gi|336477476|ref|YP_004616617.1| - 0.025 14.5 0.6 0.058 13.3 0.0 1.9 2 0 0 2 2 2 0 RCD1-SRO-TAF4 (RST) plant domain Peptidase_C65 PF10275.9 gi|336477476|ref|YP_004616617.1| - 0.098 12.1 0.4 0.83 9.0 0.3 2.1 2 0 0 2 2 2 0 Peptidase C65 Otubain Goodbye PF17109.5 gi|336477476|ref|YP_004616617.1| - 0.14 12.6 0.9 1.8 9.0 0.2 2.9 4 0 0 4 4 4 0 fungal STAND N-terminal Goodbye domain CRISPR_Cse2 PF09485.10 gi|336477477|ref|YP_004616618.1| - 1.6e-19 70.8 0.0 1.9e-19 70.6 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cse2 (CRISPR_cse2) DUF4747 PF15931.5 gi|336477477|ref|YP_004616618.1| - 0.031 14.0 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4747) CRISPR_Cse1 PF09481.10 gi|336477478|ref|YP_004616619.1| - 3.8e-99 332.8 0.0 4.4e-99 332.6 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Cse1 (CRISPR_cse1) HD_6 PF18019.1 gi|336477479|ref|YP_004616620.1| - 5.8e-43 147.3 0.0 8.3e-43 146.8 0.0 1.2 1 0 0 1 1 1 1 HD domain ResIII PF04851.15 gi|336477479|ref|YP_004616620.1| - 3.5e-05 23.9 0.0 8.9e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|336477479|ref|YP_004616620.1| - 0.00047 20.0 0.0 0.0039 17.0 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|336477479|ref|YP_004616620.1| - 0.0011 19.2 0.0 0.0036 17.6 0.1 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain Glyco_hydro_65m PF03632.15 gi|336477479|ref|YP_004616620.1| - 0.0029 16.5 0.0 0.55 9.0 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 65 central catalytic domain DUF98 PF01947.16 gi|336477480|ref|YP_004616621.1| - 4.6e-20 72.1 0.0 6.2e-20 71.7 0.0 1.0 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase UTRA PF07702.13 gi|336477480|ref|YP_004616621.1| - 0.00078 19.3 0.0 0.001 18.9 0.0 1.1 1 0 0 1 1 1 1 UTRA domain DUF5611 PF18446.1 gi|336477481|ref|YP_004616622.1| - 2.3e-34 118.3 0.6 2.5e-34 118.2 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) DUF1189 PF06691.11 gi|336477481|ref|YP_004616622.1| - 0.19 11.2 0.2 0.21 11.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) AIRS PF00586.24 gi|336477483|ref|YP_004616624.1| - 7.2e-17 61.8 0.4 1.8e-16 60.6 0.5 1.6 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|336477483|ref|YP_004616624.1| - 7.8e-16 58.6 0.0 1.3e-15 57.8 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Radical_SAM PF04055.21 gi|336477484|ref|YP_004616625.1| - 3.2e-24 86.2 0.1 4.4e-24 85.7 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|336477484|ref|YP_004616625.1| - 0.0001 22.4 0.0 0.00021 21.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|336477484|ref|YP_004616625.1| - 0.0032 17.7 0.0 0.0055 17.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.19 gi|336477485|ref|YP_004616626.1| - 1.6e-28 99.1 0.2 2e-28 98.8 0.2 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Cas_Cas02710 PF09670.10 gi|336477485|ref|YP_004616626.1| - 0.1 11.4 0.0 0.12 11.2 0.0 1.3 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) Radical_SAM PF04055.21 gi|336477486|ref|YP_004616627.1| - 3.7e-10 40.4 0.0 5.9e-10 39.8 0.0 1.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|336477486|ref|YP_004616627.1| - 1.4e-09 38.1 0.0 2.7e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|336477486|ref|YP_004616627.1| - 1.2e-08 35.3 0.0 2.8e-08 34.1 0.0 1.6 1 1 1 2 2 2 1 4Fe-4S single cluster domain DUF366 PF04017.12 gi|336477487|ref|YP_004616628.1| - 8.1e-72 240.5 1.1 9.1e-72 240.4 1.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) QueC PF06508.13 gi|336477488|ref|YP_004616629.1| - 3e-59 200.0 0.0 3.5e-59 199.8 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|336477488|ref|YP_004616629.1| - 4.9e-05 23.0 0.1 0.054 13.1 0.0 2.6 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.20 gi|336477488|ref|YP_004616629.1| - 0.00095 19.0 0.0 0.0087 15.8 0.0 2.0 2 0 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.16 gi|336477488|ref|YP_004616629.1| - 0.09 11.5 0.0 0.19 10.5 0.0 1.5 1 0 0 1 1 1 0 tRNA methyl transferase Asn_synthase PF00733.21 gi|336477488|ref|YP_004616629.1| - 0.097 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase Cupredoxin_1 PF13473.6 gi|336477490|ref|YP_004616631.1| - 0.00036 20.6 0.0 0.00048 20.2 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|336477490|ref|YP_004616631.1| - 0.053 14.0 0.1 1.6 9.3 0.1 2.1 1 1 0 1 1 1 0 Copper binding proteins, plastocyanin/azurin family ThiS-like PF14453.6 gi|336477490|ref|YP_004616631.1| - 0.11 12.6 0.7 0.19 11.8 0.1 1.7 2 0 0 2 2 2 0 ThiS-like ubiquitin AMP-binding PF00501.28 gi|336477491|ref|YP_004616632.1| - 3.2e-15 55.7 0.0 4e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme SIS_2 PF13580.6 gi|336477491|ref|YP_004616632.1| - 0.037 14.0 0.0 0.068 13.2 0.0 1.4 1 0 0 1 1 1 0 SIS domain Sulphotransf PF09037.10 gi|336477491|ref|YP_004616632.1| - 0.15 11.6 0.2 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 Stf0 sulphotransferase DUF3303 PF11746.8 gi|336477492|ref|YP_004616633.1| - 2.1e-08 34.3 0.0 2.5e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) DUF4242 PF14026.6 gi|336477492|ref|YP_004616633.1| - 0.014 15.6 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4242) NTP_transf_2 PF01909.23 gi|336477493|ref|YP_004616634.1| - 0.013 15.8 0.0 0.029 14.7 0.0 1.6 1 0 0 1 1 1 0 Nucleotidyltransferase domain CarboxypepD_reg PF13620.6 gi|336477493|ref|YP_004616634.1| - 0.04 14.2 0.2 0.41 10.9 0.1 2.4 1 1 2 3 3 3 0 Carboxypeptidase regulatory-like domain OCD_Mu_crystall PF02423.15 gi|336477494|ref|YP_004616635.1| - 5e-108 360.8 0.5 5.6e-108 360.6 0.5 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|336477494|ref|YP_004616635.1| - 0.0062 16.6 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DUF5616 PF18481.1 gi|336477495|ref|YP_004616636.1| - 1.2e-46 158.6 0.1 1.8e-46 158.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|336477495|ref|YP_004616636.1| - 5.4e-22 77.2 0.0 1.1e-21 76.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF434) RimK PF08443.11 gi|336477496|ref|YP_004616637.1| - 4.2e-27 95.0 0.0 8.2e-27 94.0 0.0 1.5 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|336477496|ref|YP_004616637.1| - 2.1e-11 43.6 0.1 4.4e-11 42.5 0.1 1.5 1 1 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|336477496|ref|YP_004616637.1| - 1.5e-07 31.0 0.0 1.5e-06 27.6 0.0 2.4 1 1 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|336477496|ref|YP_004616637.1| - 2.2e-07 30.4 0.0 0.015 14.6 0.0 2.4 1 1 1 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|336477496|ref|YP_004616637.1| - 3.8e-07 30.3 0.0 1.5e-06 28.4 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain Rimk_N PF18030.1 gi|336477496|ref|YP_004616637.1| - 5e-05 23.6 0.0 9.7e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 RimK PreATP-grasp domain ATPgrasp_Ter PF15632.6 gi|336477496|ref|YP_004616637.1| - 0.011 15.4 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.19 gi|336477496|ref|YP_004616637.1| - 0.04 13.7 0.0 3.9 7.2 0.0 2.3 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CP_ATPgrasp_2 PF14403.6 gi|336477496|ref|YP_004616637.1| - 0.041 12.8 0.0 4.1 6.2 0.0 2.2 2 0 0 2 2 2 0 Circularly permuted ATP-grasp type 2 TTL PF03133.15 gi|336477496|ref|YP_004616637.1| - 0.1 11.7 0.2 3.5 6.7 0.1 2.7 2 1 0 2 2 2 0 Tubulin-tyrosine ligase family PTH2 PF01981.16 gi|336477497|ref|YP_004616638.1| - 3.4e-40 137.0 0.4 3.8e-40 136.8 0.4 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TP_methylase PF00590.20 gi|336477497|ref|YP_004616638.1| - 0.015 15.3 0.8 0.025 14.5 0.3 1.6 1 1 1 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases Transglut_core PF01841.19 gi|336477498|ref|YP_004616639.1| - 1.4e-07 31.9 0.0 3.7e-07 30.6 0.0 1.7 1 1 0 1 1 1 1 Transglutaminase-like superfamily DUF3755 PF12579.8 gi|336477498|ref|YP_004616639.1| - 0.089 12.4 0.8 11 5.8 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3755) TruD PF01142.18 gi|336477499|ref|YP_004616640.1| - 5.8e-164 545.8 0.2 6.6e-164 545.6 0.2 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) CTP_synth_N PF06418.14 gi|336477500|ref|YP_004616641.1| - 2.3e-124 414.0 1.4 3.4e-124 413.4 1.4 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|336477500|ref|YP_004616641.1| - 1.3e-58 197.9 0.0 2.6e-58 196.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.23 gi|336477500|ref|YP_004616641.1| - 0.00017 21.6 0.0 0.00054 20.0 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.13 gi|336477500|ref|YP_004616641.1| - 0.0013 18.6 0.1 0.0087 15.8 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 Transket_pyr PF02779.24 gi|336477500|ref|YP_004616641.1| - 0.054 13.2 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Transketolase, pyrimidine binding domain DJ-1_PfpI PF01965.24 gi|336477500|ref|YP_004616641.1| - 0.13 12.1 0.0 0.51 10.1 0.0 2.0 2 0 0 2 2 2 0 DJ-1/PfpI family Nucleic_acid_bd PF13820.6 gi|336477500|ref|YP_004616641.1| - 0.14 12.0 0.1 15 5.4 0.0 2.4 2 0 0 2 2 2 0 Putative nucleic acid-binding region Trm112p PF03966.16 gi|336477502|ref|YP_004616643.1| - 1.6e-09 38.2 0.9 2.9e-09 37.4 0.9 1.5 1 1 0 1 1 1 1 Trm112p-like protein Lar_restr_allev PF14354.6 gi|336477502|ref|YP_004616643.1| - 0.00048 20.5 0.2 0.00052 20.3 0.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Cys_rich_KTR PF14205.6 gi|336477502|ref|YP_004616643.1| - 0.017 14.9 1.8 0.054 13.3 1.8 1.7 1 1 0 1 1 1 0 Cysteine-rich KTR A2L_zn_ribbon PF08792.10 gi|336477502|ref|YP_004616643.1| - 0.017 14.8 0.5 0.15 11.8 0.5 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|336477502|ref|YP_004616643.1| - 0.017 15.4 1.7 0.075 13.3 1.7 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-UDP PF14569.6 gi|336477502|ref|YP_004616643.1| - 0.027 14.6 0.2 0.039 14.1 0.2 1.3 1 1 0 1 1 1 0 Zinc-binding RING-finger Elf1 PF05129.13 gi|336477502|ref|YP_004616643.1| - 0.031 14.3 0.0 0.035 14.2 0.0 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-RRPl_C4 PF17026.5 gi|336477502|ref|YP_004616643.1| - 0.034 14.3 0.2 0.06 13.5 0.2 1.6 1 1 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type zf-C4_Topoisom PF01396.19 gi|336477502|ref|YP_004616643.1| - 0.047 13.5 0.9 0.85 9.5 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger C1_4 PF07975.12 gi|336477502|ref|YP_004616643.1| - 0.05 13.8 0.1 0.068 13.4 0.1 1.2 1 0 0 1 1 1 0 TFIIH C1-like domain DUF3797 PF12677.7 gi|336477502|ref|YP_004616643.1| - 0.051 13.5 3.4 0.24 11.3 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-ribbon_3 PF13248.6 gi|336477502|ref|YP_004616643.1| - 0.063 12.7 1.9 1.3 8.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|336477502|ref|YP_004616643.1| - 0.07 13.1 0.8 0.68 9.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain CK_II_beta PF01214.18 gi|336477502|ref|YP_004616643.1| - 0.08 12.7 0.2 0.082 12.7 0.2 1.0 1 0 0 1 1 1 0 Casein kinase II regulatory subunit Nudix_N_2 PF14803.6 gi|336477502|ref|YP_004616643.1| - 0.12 12.4 3.9 1.8 8.5 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Anti-TRAP PF15777.5 gi|336477502|ref|YP_004616643.1| - 0.12 12.3 2.4 5.7 7.0 0.3 2.1 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein TF_Zn_Ribbon PF08271.12 gi|336477502|ref|YP_004616643.1| - 0.22 11.1 3.6 1 8.9 3.3 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_9 PF14369.6 gi|336477502|ref|YP_004616643.1| - 0.29 11.4 2.9 10 6.5 0.1 2.2 1 1 1 2 2 2 0 zinc-ribbon DNA_ligase_ZBD PF03119.16 gi|336477502|ref|YP_004616643.1| - 1.6 8.9 5.9 2.1 8.4 0.8 2.3 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain HisKA_2 PF07568.12 gi|336477503|ref|YP_004616644.1| - 6.7e-29 99.8 2.8 6.7e-29 99.8 2.8 2.4 2 0 0 2 2 2 1 Histidine kinase GAF_3 PF13492.6 gi|336477503|ref|YP_004616644.1| - 7.2e-10 39.3 0.0 1.8e-09 38.0 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|336477503|ref|YP_004616644.1| - 6.2e-09 36.3 0.0 1.1e-08 35.4 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|336477503|ref|YP_004616644.1| - 7.2e-09 36.1 0.1 2.3e-08 34.5 0.1 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|336477503|ref|YP_004616644.1| - 9e-08 32.7 0.2 6.5e-07 30.0 0.2 2.2 2 0 0 2 2 2 1 HWE histidine kinase PAS_8 PF13188.7 gi|336477503|ref|YP_004616644.1| - 5.6e-07 29.4 0.1 0.0063 16.5 0.1 2.7 2 0 0 2 2 2 2 PAS domain PAS_9 PF13426.7 gi|336477503|ref|YP_004616644.1| - 5.6e-06 26.6 0.2 0.0024 18.1 0.1 3.2 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|336477503|ref|YP_004616644.1| - 7.3e-05 23.0 0.0 0.65 10.3 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|336477503|ref|YP_004616644.1| - 0.00042 20.3 0.0 0.14 12.2 0.0 2.6 2 0 0 2 2 2 1 PAS fold DUF5305 PF17231.2 gi|336477503|ref|YP_004616644.1| - 0.0011 18.4 0.5 0.0033 16.9 0.5 1.8 1 0 0 1 1 1 1 Family of unknown function (DUF5305) HATPase_c_2 PF13581.6 gi|336477503|ref|YP_004616644.1| - 0.0031 17.4 0.0 0.0067 16.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.26 gi|336477503|ref|YP_004616644.1| - 0.16 12.6 0.0 0.34 11.6 0.0 1.6 1 0 0 1 1 1 0 GAF domain PulG PF11773.8 gi|336477503|ref|YP_004616644.1| - 0.96 9.3 4.7 0.65 9.9 0.3 3.0 3 0 0 3 3 3 0 Type II secretory pathway pseudopilin Gate PF07670.14 gi|336477504|ref|YP_004616645.1| - 3.7e-06 27.2 22.2 0.0056 16.9 4.4 2.8 2 2 0 2 2 2 2 Nucleoside recognition DUF5345 PF17280.2 gi|336477504|ref|YP_004616645.1| - 0.42 10.6 0.1 0.42 10.6 0.1 3.2 3 0 0 3 3 3 0 Family of unknown function (DUF5345) FpoO PF10621.9 gi|336477505|ref|YP_004616646.1| - 2e-34 118.2 3.1 4.1e-26 91.4 0.4 2.0 1 1 1 2 2 2 2 F420H2 dehydrogenase subunit FpoO Fer4_18 PF13746.6 gi|336477505|ref|YP_004616646.1| - 0.029 14.6 0.2 0.029 14.6 0.2 1.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain zf-C4_ClpX PF06689.13 gi|336477505|ref|YP_004616646.1| - 0.079 12.9 6.8 0.18 11.7 0.2 3.3 4 0 0 4 4 4 0 ClpX C4-type zinc finger OrfB_Zn_ribbon PF07282.11 gi|336477505|ref|YP_004616646.1| - 0.61 10.1 6.1 0.92 9.5 0.2 2.9 3 0 0 3 3 3 0 Putative transposase DNA-binding domain zf-AD PF07776.15 gi|336477505|ref|YP_004616646.1| - 1.3 9.3 4.9 5.3 7.4 5.0 2.0 1 1 0 1 1 1 0 Zinc-finger associated domain (zf-AD) Proton_antipo_M PF00361.20 gi|336477506|ref|YP_004616647.1| - 4.8e-72 242.6 31.5 4.8e-72 242.6 31.5 2.4 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|336477506|ref|YP_004616647.1| - 0.021 14.9 0.9 0.021 14.9 0.9 4.5 5 1 1 6 6 6 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GET2 PF08690.10 gi|336477506|ref|YP_004616647.1| - 0.46 10.1 2.3 1 9.0 2.3 1.5 1 0 0 1 1 1 0 GET complex subunit GET2 Proton_antipo_M PF00361.20 gi|336477507|ref|YP_004616648.1| - 4.8e-69 232.8 40.6 4.8e-69 232.8 40.6 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|336477507|ref|YP_004616648.1| - 0.00018 21.6 4.2 0.00018 21.6 4.2 5.2 2 1 1 5 5 5 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|336477508|ref|YP_004616649.1| - 3.4e-76 256.2 30.8 3.4e-76 256.2 30.8 2.3 1 1 1 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|336477508|ref|YP_004616649.1| - 5.9e-18 64.7 0.4 5.9e-18 64.7 0.4 3.4 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|336477508|ref|YP_004616649.1| - 2.8e-05 23.9 2.2 2.8e-05 23.9 2.2 2.4 3 0 0 3 3 3 1 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Oxidored_q2 PF00420.24 gi|336477509|ref|YP_004616650.1| - 8e-23 80.1 9.1 8.6e-23 80.0 9.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Epiglycanin_C PF14654.6 gi|336477509|ref|YP_004616650.1| - 0.16 12.1 1.9 0.37 10.9 0.1 1.9 1 1 1 2 2 2 0 Mucin, catalytic, TM and cytoplasmic tail region DUF5392 PF17370.2 gi|336477509|ref|YP_004616650.1| - 1.2 9.3 5.4 1 9.4 4.9 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5392) Oxidored_q3 PF00499.20 gi|336477510|ref|YP_004616651.1| - 1.6e-11 44.1 0.8 1.8e-11 43.9 0.8 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Oxidored_q3 PF00499.20 gi|336477511|ref|YP_004616652.1| - 1.5e-20 73.4 13.9 1.5e-20 73.4 13.9 1.6 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2721 PF11026.8 gi|336477511|ref|YP_004616652.1| - 0.36 10.7 14.3 0.14 12.0 12.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) DUF4040 PF13244.6 gi|336477511|ref|YP_004616652.1| - 1.4 9.1 14.6 0.72 10.0 12.5 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) Peptidase_U4 PF03419.13 gi|336477511|ref|YP_004616652.1| - 7.5 5.7 12.5 8 5.6 12.5 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Fer4 PF00037.27 gi|336477512|ref|YP_004616653.1| - 4.8e-15 54.7 11.8 1.3e-08 34.3 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336477512|ref|YP_004616653.1| - 7.5e-12 45.7 8.3 1.6e-11 44.6 8.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336477512|ref|YP_004616653.1| - 4.2e-11 42.8 17.7 1.5e-08 34.6 8.3 1.8 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336477512|ref|YP_004616653.1| - 1.2e-09 38.1 7.6 2e-09 37.4 7.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336477512|ref|YP_004616653.1| - 1.6e-07 32.1 10.7 0.00027 21.8 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|336477512|ref|YP_004616653.1| - 1.6e-07 31.3 8.8 1.6e-07 31.3 8.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336477512|ref|YP_004616653.1| - 5.8e-07 29.2 8.8 6.3e-05 22.8 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|336477512|ref|YP_004616653.1| - 7.1e-07 29.6 9.4 1.2e-06 28.8 8.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336477512|ref|YP_004616653.1| - 1.5e-05 24.8 13.5 0.00022 21.1 4.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|336477512|ref|YP_004616653.1| - 7.1e-05 23.6 8.3 0.008 17.0 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336477512|ref|YP_004616653.1| - 0.00013 22.4 11.5 0.0032 18.0 10.3 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336477512|ref|YP_004616653.1| - 0.00015 22.0 10.8 0.0031 17.9 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|336477512|ref|YP_004616653.1| - 0.00067 20.3 10.2 0.0057 17.4 0.5 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|336477512|ref|YP_004616653.1| - 0.0009 19.7 11.0 0.0022 18.5 2.3 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|336477512|ref|YP_004616653.1| - 0.0038 17.4 8.5 0.55 10.5 8.5 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336477512|ref|YP_004616653.1| - 0.006 17.4 18.7 0.072 14.1 3.3 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain NADHdh PF00146.21 gi|336477513|ref|YP_004616654.1| - 4.7e-106 354.5 28.7 5.4e-106 354.2 28.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase NIPSNAP PF07978.13 gi|336477513|ref|YP_004616654.1| - 0.057 13.7 0.1 0.14 12.4 0.1 1.6 1 0 0 1 1 1 0 NIPSNAP Complex1_49kDa PF00346.19 gi|336477514|ref|YP_004616655.1| - 8.5e-90 300.5 0.2 4.9e-88 294.7 0.2 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|336477514|ref|YP_004616655.1| - 0.00065 18.7 0.0 0.00083 18.4 0.0 1.1 1 0 0 1 1 1 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|336477515|ref|YP_004616656.1| - 9.7e-35 119.8 0.1 1.2e-34 119.5 0.1 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|336477516|ref|YP_004616657.1| - 1.7e-22 79.6 0.0 2.6e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.19 gi|336477517|ref|YP_004616658.1| - 3.2e-31 107.4 5.1 3.2e-31 107.4 5.1 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Helicase_Sgs1 PF11408.8 gi|336477517|ref|YP_004616658.1| - 0.17 11.9 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 Sgs1 RecQ helicase DUF973 PF06157.11 gi|336477517|ref|YP_004616658.1| - 1.3 8.0 8.5 1.6 7.7 8.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) Fer4 PF00037.27 gi|336477518|ref|YP_004616659.1| - 5.4e-12 45.0 14.9 2.8e-06 26.9 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336477518|ref|YP_004616659.1| - 1.2e-08 34.8 12.9 0.0004 20.7 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336477518|ref|YP_004616659.1| - 2.5e-08 33.9 26.3 3.4e-06 27.1 14.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336477518|ref|YP_004616659.1| - 1.4e-07 32.0 13.0 1.8e-05 25.3 13.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336477518|ref|YP_004616659.1| - 3.1e-07 31.2 10.8 0.0018 19.2 2.9 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|336477518|ref|YP_004616659.1| - 1.8e-06 27.8 14.7 0.0016 18.4 4.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336477518|ref|YP_004616659.1| - 2.6e-06 27.4 10.5 3.7e-06 27.0 10.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336477518|ref|YP_004616659.1| - 1.1e-05 25.2 13.6 0.00024 21.0 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336477518|ref|YP_004616659.1| - 0.00018 22.0 14.9 0.0055 17.2 3.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336477518|ref|YP_004616659.1| - 0.00026 21.4 14.3 0.002 18.5 2.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336477518|ref|YP_004616659.1| - 0.00041 21.1 17.6 0.066 14.2 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336477518|ref|YP_004616659.1| - 0.00082 19.4 28.4 0.018 15.1 16.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336477518|ref|YP_004616659.1| - 0.0068 17.2 11.3 0.12 13.2 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336477518|ref|YP_004616659.1| - 0.025 15.1 11.3 0.29 11.7 1.7 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|336477518|ref|YP_004616659.1| - 0.44 10.8 10.2 0.82 9.9 10.2 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|336477518|ref|YP_004616659.1| - 0.75 10.6 15.7 1.5 9.6 3.7 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain Amino_oxidase PF01593.24 gi|336477519|ref|YP_004616660.1| - 3.6e-21 76.0 0.0 4.4e-21 75.7 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|336477519|ref|YP_004616660.1| - 4.1e-13 49.3 0.3 1.7e-12 47.4 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|336477519|ref|YP_004616660.1| - 4e-06 26.3 0.3 0.0086 15.3 0.0 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|336477519|ref|YP_004616660.1| - 1.2e-05 24.6 0.1 0.0024 17.0 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|336477519|ref|YP_004616660.1| - 8.2e-05 21.5 0.1 0.036 12.8 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.27 gi|336477519|ref|YP_004616660.1| - 0.00029 21.3 0.3 0.038 14.6 0.1 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|336477519|ref|YP_004616660.1| - 0.0003 20.5 0.2 0.25 10.9 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|336477519|ref|YP_004616660.1| - 0.0039 16.6 0.3 0.0076 15.6 0.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|336477519|ref|YP_004616660.1| - 0.0078 16.2 0.7 0.96 9.4 0.1 3.1 3 0 0 3 3 3 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|336477519|ref|YP_004616660.1| - 0.024 13.8 0.3 0.058 12.5 0.1 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|336477519|ref|YP_004616660.1| - 0.065 12.5 1.8 0.067 12.4 0.2 1.8 2 0 0 2 2 2 0 FAD binding domain Radical_SAM PF04055.21 gi|336477520|ref|YP_004616661.1| - 1e-13 52.0 0.0 1.9e-13 51.1 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|336477521|ref|YP_004616662.1| - 7.7e-17 62.2 0.1 1.2e-16 61.6 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HTH_30 PF13556.6 gi|336477521|ref|YP_004616662.1| - 0.1 12.4 1.4 2.3 8.1 0.1 2.4 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain CofC PF01983.16 gi|336477522|ref|YP_004616663.1| - 7.9e-49 165.8 0.1 9.6e-49 165.5 0.1 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|336477522|ref|YP_004616663.1| - 3e-05 24.4 0.0 3.6e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Spore_Cse60 PF10957.8 gi|336477522|ref|YP_004616663.1| - 0.096 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Sporulation protein Cse60 FAD_binding_3 PF01494.19 gi|336477523|ref|YP_004616664.1| - 1.8e-17 63.6 2.4 1.2e-09 37.9 0.4 2.8 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|336477523|ref|YP_004616664.1| - 8e-11 41.7 3.7 7.9e-07 28.5 0.3 2.2 1 1 1 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|336477523|ref|YP_004616664.1| - 7.2e-10 38.8 5.1 3.2e-09 36.7 5.1 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|336477523|ref|YP_004616664.1| - 1.4e-09 37.2 0.0 3.8e-09 35.8 0.0 1.7 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|336477523|ref|YP_004616664.1| - 1.5e-09 37.9 1.5 0.00052 19.7 0.2 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|336477523|ref|YP_004616664.1| - 2.2e-09 36.7 0.1 7e-05 21.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|336477523|ref|YP_004616664.1| - 1e-07 31.5 0.3 2.2e-07 30.4 0.0 1.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|336477523|ref|YP_004616664.1| - 3.5e-07 29.6 1.1 0.0017 17.5 0.5 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|336477523|ref|YP_004616664.1| - 7.4e-06 26.1 0.0 1.8e-05 24.9 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|336477523|ref|YP_004616664.1| - 4.5e-05 22.7 1.5 0.00015 21.0 1.5 1.9 1 1 1 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|336477523|ref|YP_004616664.1| - 0.00012 21.4 0.4 0.00039 19.7 0.2 1.8 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|336477523|ref|YP_004616664.1| - 0.0092 15.3 0.2 0.02 14.2 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|336477523|ref|YP_004616664.1| - 0.02 14.2 0.2 0.078 12.3 0.0 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|336477523|ref|YP_004616664.1| - 0.04 13.8 0.1 0.11 12.4 0.1 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SE PF08491.10 gi|336477523|ref|YP_004616664.1| - 0.054 12.5 0.5 0.12 11.4 0.0 1.8 2 0 0 2 2 2 0 Squalene epoxidase Pyr_redox PF00070.27 gi|336477523|ref|YP_004616664.1| - 0.08 13.5 1.9 0.55 10.8 0.1 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Cupin_2 PF07883.11 gi|336477525|ref|YP_004616666.1| - 2.1e-12 46.6 0.1 3.1e-12 46.0 0.1 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|336477525|ref|YP_004616666.1| - 0.00079 19.3 0.0 0.00095 19.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Pirin_C PF05726.13 gi|336477525|ref|YP_004616666.1| - 0.011 16.1 0.0 0.014 15.7 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain MannoseP_isomer PF01050.18 gi|336477525|ref|YP_004616666.1| - 0.024 14.5 0.1 0.029 14.3 0.1 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase TrkH PF02386.16 gi|336477526|ref|YP_004616667.1| - 2e-58 198.1 19.6 1e-57 195.7 19.6 1.9 1 1 0 1 1 1 1 Cation transport protein PufQ PF05398.11 gi|336477526|ref|YP_004616667.1| - 0.073 13.2 2.9 0.12 12.6 0.1 2.4 2 0 0 2 2 2 0 PufQ cytochrome subunit TrkH PF02386.16 gi|336477527|ref|YP_004616668.1| - 1.1e-64 218.8 19.7 9.4e-64 215.7 19.7 1.9 1 1 0 1 1 1 1 Cation transport protein DUF3671 PF12420.8 gi|336477527|ref|YP_004616668.1| - 0.089 12.9 5.1 1.1 9.4 0.2 3.2 3 0 0 3 3 3 0 Protein of unknown function DUF2909 PF11137.8 gi|336477527|ref|YP_004616668.1| - 0.13 12.3 0.2 0.13 12.3 0.2 4.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2909) TrkA_N PF02254.18 gi|336477528|ref|YP_004616669.1| - 4.3e-47 159.2 7.3 4.3e-26 91.5 0.4 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|336477528|ref|YP_004616669.1| - 1e-33 114.9 3.0 4.2e-16 58.5 0.1 3.4 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|336477528|ref|YP_004616669.1| - 5.8e-10 39.5 3.8 9.4e-05 22.8 0.2 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|336477528|ref|YP_004616669.1| - 6.9e-09 35.9 2.3 0.0012 18.9 0.2 2.6 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|336477528|ref|YP_004616669.1| - 9e-08 32.4 5.7 0.00063 20.0 0.8 3.0 3 0 0 3 3 3 2 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|336477528|ref|YP_004616669.1| - 2.8e-06 26.8 3.1 0.0054 16.1 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|336477528|ref|YP_004616669.1| - 0.00014 21.9 0.5 0.78 9.7 0.0 2.9 2 1 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|336477528|ref|YP_004616669.1| - 0.00014 22.3 2.5 0.56 10.8 0.1 3.2 3 0 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|336477528|ref|YP_004616669.1| - 0.00016 21.4 0.5 0.18 11.4 0.0 2.5 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|336477528|ref|YP_004616669.1| - 0.00022 20.6 0.1 0.5 9.6 0.0 2.5 2 1 0 2 2 2 2 FAD binding domain Ldh_1_N PF00056.23 gi|336477528|ref|YP_004616669.1| - 0.00023 21.3 10.0 0.019 15.1 0.5 2.7 3 0 0 3 3 3 2 lactate/malate dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|336477528|ref|YP_004616669.1| - 0.00034 21.1 0.3 0.33 11.5 0.0 2.4 2 0 0 2 2 2 2 XdhC Rossmann domain Pyr_redox_2 PF07992.14 gi|336477528|ref|YP_004616669.1| - 0.00039 19.8 1.8 0.0077 15.5 1.8 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|336477528|ref|YP_004616669.1| - 0.00042 20.2 0.6 0.81 9.5 0.1 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|336477528|ref|YP_004616669.1| - 0.00058 19.5 5.5 0.11 12.1 0.6 3.0 3 0 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|336477528|ref|YP_004616669.1| - 0.0021 17.7 0.2 0.27 10.8 0.2 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|336477528|ref|YP_004616669.1| - 0.0041 17.6 0.1 1.7 9.2 0.0 3.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase SIS PF01380.22 gi|336477528|ref|YP_004616669.1| - 0.016 15.0 0.4 0.38 10.6 0.0 2.9 3 0 0 3 3 2 0 SIS domain NAD_binding_8 PF13450.6 gi|336477528|ref|YP_004616669.1| - 0.021 15.0 0.1 0.37 11.1 0.0 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.15 gi|336477528|ref|YP_004616669.1| - 0.024 14.8 0.7 9.1 6.4 0.1 2.7 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_9 PF13454.6 gi|336477528|ref|YP_004616669.1| - 0.028 14.4 0.1 0.78 9.7 0.0 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|336477528|ref|YP_004616669.1| - 0.037 12.9 0.1 0.92 8.3 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.21 gi|336477528|ref|YP_004616669.1| - 0.072 12.4 2.5 2.5 7.4 0.0 2.9 2 1 1 3 3 3 0 ThiF family GFO_IDH_MocA PF01408.22 gi|336477528|ref|YP_004616669.1| - 0.073 13.9 0.2 11 6.9 0.0 2.5 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold PglD_N PF17836.1 gi|336477528|ref|YP_004616669.1| - 0.11 13.2 5.1 3.1 8.5 0.8 2.8 2 0 0 2 2 2 0 PglD N-terminal domain HI0933_like PF03486.14 gi|336477528|ref|YP_004616669.1| - 0.13 10.9 0.3 2.6 6.7 0.0 2.5 3 0 0 3 3 3 0 HI0933-like protein ADH_zinc_N PF00107.26 gi|336477528|ref|YP_004616669.1| - 1 9.4 3.3 2.4 8.2 0.1 3.0 3 1 0 3 3 3 0 Zinc-binding dehydrogenase DnaJ_C PF01556.18 gi|336477529|ref|YP_004616670.1| - 1.7e-42 145.0 0.0 2.2e-42 144.6 0.0 1.1 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|336477529|ref|YP_004616670.1| - 4.6e-29 100.3 4.8 7.8e-29 99.6 4.8 1.4 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|336477529|ref|YP_004616670.1| - 4.3e-14 52.6 16.7 8.3e-14 51.7 16.7 1.5 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|336477529|ref|YP_004616670.1| - 0.092 12.7 17.5 1.4 8.9 0.2 3.3 1 1 3 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein HSP70 PF00012.20 gi|336477530|ref|YP_004616671.1| - 8.3e-248 823.5 18.1 7.2e-246 817.1 18.1 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|336477530|ref|YP_004616671.1| - 2.3e-19 69.4 2.3 5.5e-19 68.1 2.3 1.6 1 0 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.16 gi|336477530|ref|YP_004616671.1| - 0.0054 16.5 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain cwf21 PF08312.12 gi|336477530|ref|YP_004616671.1| - 0.0057 16.8 3.2 3.1 8.0 1.8 3.8 3 0 0 3 3 3 1 cwf21 domain Exo84_C PF16528.5 gi|336477530|ref|YP_004616671.1| - 0.025 14.4 4.3 2.8 7.7 0.0 2.3 2 0 0 2 2 2 0 Exocyst component 84 C-terminal Raco_middle PF17651.1 gi|336477530|ref|YP_004616671.1| - 0.24 11.1 2.8 0.37 10.4 0.0 2.7 3 0 0 3 3 3 0 RACo middle region DUF3347 PF11827.8 gi|336477530|ref|YP_004616671.1| - 0.79 9.9 15.1 1.4 9.0 10.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) Vfa1 PF08432.10 gi|336477530|ref|YP_004616671.1| - 1.1 9.6 12.3 2.2 8.6 12.3 1.4 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 DUF29 PF01724.16 gi|336477530|ref|YP_004616671.1| - 1.6 9.0 6.4 4.4 7.5 6.4 1.7 1 1 0 1 1 1 0 Domain of unknown function DUF29 Phage_connect_1 PF05135.13 gi|336477530|ref|YP_004616671.1| - 1.8 9.1 11.6 1.1 9.7 1.7 3.9 3 1 1 4 4 4 0 Phage gp6-like head-tail connector protein FtsA PF14450.6 gi|336477530|ref|YP_004616671.1| - 6.1 7.3 17.5 2.7 8.5 0.2 4.3 3 3 0 3 3 2 0 Cell division protein FtsA GrpE PF01025.19 gi|336477531|ref|YP_004616672.1| - 9.9e-54 181.5 1.5 1.1e-53 181.3 1.5 1.0 1 0 0 1 1 1 1 GrpE CLZ PF16526.5 gi|336477531|ref|YP_004616672.1| - 0.0077 16.6 0.5 0.0077 16.6 0.5 2.1 2 1 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Sigma_reg_C PF13791.6 gi|336477531|ref|YP_004616672.1| - 0.11 12.8 0.4 0.18 12.0 0.4 1.4 1 1 0 1 1 1 0 Sigma factor regulator C-terminal Acyl_transf_3 PF01757.22 gi|336477532|ref|YP_004616673.1| - 0.0036 16.4 7.9 0.0044 16.1 7.9 1.0 1 0 0 1 1 1 1 Acyltransferase family BCHF PF07284.11 gi|336477532|ref|YP_004616673.1| - 0.01 15.8 3.5 0.041 13.9 1.1 2.2 2 0 0 2 2 2 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) ATP-grasp_3 PF02655.14 gi|336477533|ref|YP_004616674.1| - 4e-32 111.5 0.0 5.6e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|336477533|ref|YP_004616674.1| - 0.0011 19.2 0.0 0.0027 17.9 0.0 1.6 1 1 0 1 1 1 1 pre ATP-grasp 3 domain ATPgrasp_ST PF14397.6 gi|336477533|ref|YP_004616674.1| - 0.06 12.6 0.0 0.21 10.8 0.0 1.9 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.13 gi|336477533|ref|YP_004616674.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus Rossmann-like PF10727.9 gi|336477533|ref|YP_004616674.1| - 0.14 12.0 0.2 0.46 10.3 0.0 1.9 3 0 0 3 3 3 0 Rossmann-like domain Hydantoinase_A PF01968.18 gi|336477534|ref|YP_004616675.1| - 3.4e-25 88.9 0.2 8.6e-24 84.3 0.1 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|336477534|ref|YP_004616675.1| - 1.8e-05 23.5 0.0 0.0037 15.9 0.0 2.2 2 0 0 2 2 2 2 MutL protein DeoRC PF00455.22 gi|336477534|ref|YP_004616675.1| - 3.9e-05 23.6 0.1 0.23 11.4 0.0 2.3 2 0 0 2 2 2 2 DeoR C terminal sensor domain FtsA PF14450.6 gi|336477534|ref|YP_004616675.1| - 0.0042 17.5 0.1 0.68 10.4 0.0 2.6 2 0 0 2 2 2 1 Cell division protein FtsA Hydant_A_N PF05378.13 gi|336477534|ref|YP_004616675.1| - 0.19 11.4 1.4 4.6 6.9 0.0 2.6 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region AA_kinase PF00696.28 gi|336477535|ref|YP_004616676.1| - 9e-12 45.1 0.0 9.3e-06 25.4 0.0 2.2 1 1 1 2 2 2 2 Amino acid kinase family DUF1610 PF07754.11 gi|336477536|ref|YP_004616677.1| - 3.7e-08 33.2 7.3 9.7e-08 31.8 2.2 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) tRNA-synt_1g PF09334.11 gi|336477536|ref|YP_004616677.1| - 0.0021 16.9 3.3 0.0022 16.8 3.3 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (M) zf-CHY PF05495.12 gi|336477536|ref|YP_004616677.1| - 0.0087 16.5 11.2 0.16 12.5 10.9 2.0 1 1 1 2 2 2 1 CHY zinc finger zinc-ribbons_6 PF07191.12 gi|336477536|ref|YP_004616677.1| - 0.048 13.6 10.4 0.091 12.7 10.4 1.5 1 1 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|336477536|ref|YP_004616677.1| - 0.059 13.1 15.2 0.25 11.1 0.4 3.5 3 1 0 3 3 3 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|336477536|ref|YP_004616677.1| - 0.11 12.8 9.5 3.9 7.8 0.2 3.2 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain DUF1272 PF06906.11 gi|336477536|ref|YP_004616677.1| - 0.33 11.1 11.3 1.9 8.6 1.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Zn_Tnp_IS91 PF14319.6 gi|336477536|ref|YP_004616677.1| - 0.43 10.6 9.1 0.69 10.0 9.1 1.4 1 1 0 1 1 1 0 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|336477536|ref|YP_004616677.1| - 0.44 10.5 11.0 0.22 11.5 6.4 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2HC5 PF06221.13 gi|336477536|ref|YP_004616677.1| - 0.67 10.0 10.2 0.7 9.9 2.3 2.5 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Cript PF10235.9 gi|336477536|ref|YP_004616677.1| - 1.2 9.8 12.0 1.5 9.4 1.2 2.4 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT TF_Zn_Ribbon PF08271.12 gi|336477536|ref|YP_004616677.1| - 1.5 8.4 11.8 16 5.1 9.5 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|336477536|ref|YP_004616677.1| - 1.6 8.8 11.0 1.1 9.3 0.6 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|336477536|ref|YP_004616677.1| - 1.8 8.8 11.2 1.6 9.0 1.5 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Cys_rich_CPXG PF14255.6 gi|336477536|ref|YP_004616677.1| - 1.8 8.5 11.1 0.19 11.7 6.4 1.8 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-B_box PF00643.24 gi|336477536|ref|YP_004616677.1| - 1.9 8.7 12.6 22 5.3 8.4 2.8 2 1 0 2 2 2 0 B-box zinc finger C1_2 PF03107.16 gi|336477536|ref|YP_004616677.1| - 2 8.8 13.6 5.4 7.4 9.4 2.2 1 1 1 2 2 2 0 C1 domain PolC_DP2 PF03833.13 gi|336477536|ref|YP_004616677.1| - 2.4 5.9 5.4 2.3 6.0 5.4 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-C3HC4 PF00097.25 gi|336477536|ref|YP_004616677.1| - 2.4 8.1 11.8 2.2 8.2 1.4 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) CpXC PF14353.6 gi|336477536|ref|YP_004616677.1| - 2.9 7.9 6.9 5.8 7.0 1.8 2.3 1 1 1 2 2 2 0 CpXC protein Zn_ribbon_2 PF12674.7 gi|336477536|ref|YP_004616677.1| - 3 8.6 9.1 36 5.1 0.0 2.1 2 0 0 2 2 2 0 Putative zinc ribbon domain PknG_rubred PF16919.5 gi|336477536|ref|YP_004616677.1| - 3.2 7.9 8.6 0.52 10.5 5.2 1.4 1 1 0 1 1 1 0 Protein kinase G rubredoxin domain Zn_ribbon_SprT PF17283.2 gi|336477536|ref|YP_004616677.1| - 3.3 7.7 17.7 5.2 7.1 0.5 4.0 3 1 1 4 4 4 0 SprT-like zinc ribbon domain zf-Mss51 PF13824.6 gi|336477536|ref|YP_004616677.1| - 4.1 7.6 10.7 1.2 9.3 2.3 2.4 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Acetone_carb_G PF08882.11 gi|336477536|ref|YP_004616677.1| - 4.5 7.4 6.2 5 7.3 1.2 2.2 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit DUF2752 PF10825.8 gi|336477536|ref|YP_004616677.1| - 4.6 7.4 8.3 3.7 7.7 0.9 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) RecR PF02132.15 gi|336477536|ref|YP_004616677.1| - 5.5 6.6 12.9 1.5 8.4 2.1 2.6 1 1 1 2 2 2 0 RecR protein Nudix_N_2 PF14803.6 gi|336477536|ref|YP_004616677.1| - 7 6.7 15.0 3.4 7.7 3.5 3.1 1 1 1 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|336477536|ref|YP_004616677.1| - 7.5 6.1 17.3 0.93 9.0 0.7 3.4 4 0 0 4 4 4 0 zinc-ribbon domain EF1_GNE PF00736.19 gi|336477537|ref|YP_004616678.1| - 1.5e-22 79.6 0.5 1.7e-22 79.4 0.5 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.26 gi|336477537|ref|YP_004616678.1| - 0.039 14.4 1.1 0.32 11.5 0.1 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain Yip1 PF04893.17 gi|336477538|ref|YP_004616679.1| - 0.15 11.7 8.3 0.17 11.6 8.3 1.1 1 0 0 1 1 1 0 Yip1 domain ABC2_membrane_3 PF12698.7 gi|336477538|ref|YP_004616679.1| - 2.8 7.0 11.3 3.4 6.7 11.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein HATPase_c PF02518.26 gi|336477539|ref|YP_004616680.1| - 1.4e-22 80.3 0.0 4e-22 78.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|336477539|ref|YP_004616680.1| - 7.4e-06 25.9 0.1 1.5e-05 25.0 0.1 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|336477539|ref|YP_004616680.1| - 0.00064 19.7 0.0 0.0014 18.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PHM7_cyt PF14703.6 gi|336477539|ref|YP_004616680.1| - 0.0036 17.5 1.4 0.0059 16.9 1.4 1.3 1 0 0 1 1 1 1 Cytosolic domain of 10TM putative phosphate transporter CHASE PF03924.13 gi|336477539|ref|YP_004616680.1| - 0.017 15.1 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 CHASE domain DDE_Tnp_ISL3 PF01610.17 gi|336477539|ref|YP_004616680.1| - 0.034 13.9 0.9 0.058 13.1 0.9 1.3 1 0 0 1 1 1 0 Transposase SPOB_a PF14689.6 gi|336477539|ref|YP_004616680.1| - 0.093 12.5 0.2 0.26 11.0 0.2 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Putative_PNPOx PF01243.20 gi|336477540|ref|YP_004616681.1| - 1.9e-11 44.0 0.0 3.2e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_oxidase_2 PF13883.6 gi|336477540|ref|YP_004616681.1| - 2e-05 24.6 0.0 2.6e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|336477540|ref|YP_004616681.1| - 0.00082 19.4 0.0 0.001 19.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF523 PF04463.12 gi|336477541|ref|YP_004616682.1| - 1.1e-30 106.5 0.0 1.5e-30 106.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.11 gi|336477541|ref|YP_004616682.1| - 2e-20 73.2 0.0 4e-20 72.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) CRISPR_Cas9_WED PF18061.1 gi|336477541|ref|YP_004616682.1| - 0.081 13.0 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 CRISPR-Cas9 WED domain Hydantoinase_B PF02538.14 gi|336477542|ref|YP_004616683.1| - 4.9e-203 675.2 0.3 1e-202 674.2 0.3 1.6 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|336477542|ref|YP_004616683.1| - 1.1e-119 399.0 0.2 1.1e-119 399.0 0.2 1.8 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|336477542|ref|YP_004616683.1| - 9.1e-61 204.7 0.1 6e-59 198.7 0.0 2.9 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region DUF3288 PF11691.8 gi|336477542|ref|YP_004616683.1| - 0.067 13.2 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3288) MatE PF01554.18 gi|336477543|ref|YP_004616684.1| - 7.3e-51 172.0 47.4 3e-29 101.8 18.1 2.8 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|336477543|ref|YP_004616684.1| - 2.5e-11 43.8 32.3 1.9e-09 37.7 17.8 4.8 2 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain ThiI PF02568.14 gi|336477544|ref|YP_004616685.1| - 3e-56 190.1 0.0 4e-56 189.8 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|336477544|ref|YP_004616685.1| - 3.9e-22 78.9 0.0 1.6e-21 76.9 0.0 1.9 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|336477544|ref|YP_004616685.1| - 1.2e-05 24.9 0.0 0.045 13.2 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|336477544|ref|YP_004616685.1| - 0.0015 17.4 0.0 0.0026 16.6 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Pyr_redox_2 PF07992.14 gi|336477545|ref|YP_004616686.1| - 4e-55 187.1 1.7 6e-55 186.5 1.7 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pribosyltran PF00156.27 gi|336477545|ref|YP_004616686.1| - 1.4e-23 83.2 0.2 4.7e-23 81.5 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pyr_redox PF00070.27 gi|336477545|ref|YP_004616686.1| - 3.1e-18 66.1 7.2 1.7e-15 57.3 0.1 3.9 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336477545|ref|YP_004616686.1| - 1.5e-17 63.8 0.2 2e-13 50.3 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|336477545|ref|YP_004616686.1| - 3.4e-16 59.5 0.0 7.9e-16 58.3 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.22 gi|336477545|ref|YP_004616686.1| - 2.4e-08 33.5 4.2 1.1e-06 28.0 0.6 3.0 2 1 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|336477545|ref|YP_004616686.1| - 5e-08 32.1 5.8 0.0031 16.3 0.7 4.3 4 1 1 5 5 5 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|336477545|ref|YP_004616686.1| - 4.9e-07 29.9 2.5 6.5e-05 23.1 0.3 2.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|336477545|ref|YP_004616686.1| - 1e-06 28.8 2.3 0.011 15.6 0.0 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|336477545|ref|YP_004616686.1| - 1.8e-05 24.0 2.6 1.8e-05 24.0 2.6 2.5 3 1 1 4 4 4 1 FAD binding domain NAD_binding_9 PF13454.6 gi|336477545|ref|YP_004616686.1| - 1.9e-05 24.7 0.4 0.16 11.9 0.0 3.6 3 1 0 3 3 3 1 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|336477545|ref|YP_004616686.1| - 2.1e-05 23.9 2.1 0.099 11.9 0.3 2.6 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|336477545|ref|YP_004616686.1| - 4.2e-05 24.1 0.9 0.17 12.5 0.0 3.4 3 0 0 3 3 2 2 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.24 gi|336477545|ref|YP_004616686.1| - 4.7e-05 23.1 11.8 0.013 15.1 2.1 4.0 3 2 1 5 5 5 2 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|336477545|ref|YP_004616686.1| - 0.00016 21.1 0.1 0.012 15.0 0.1 2.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UPRTase PF14681.6 gi|336477545|ref|YP_004616686.1| - 0.00097 18.6 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|336477545|ref|YP_004616686.1| - 0.0015 18.1 0.0 0.0051 16.3 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase UDPG_MGDP_dh_N PF03721.14 gi|336477545|ref|YP_004616686.1| - 0.0017 18.0 2.4 0.26 10.8 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.17 gi|336477545|ref|YP_004616686.1| - 0.0077 15.5 0.1 0.028 13.7 0.1 2.0 1 0 0 1 1 1 1 Thi4 family Shikimate_DH PF01488.20 gi|336477545|ref|YP_004616686.1| - 0.017 15.2 0.2 1.3 9.1 0.1 2.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|336477545|ref|YP_004616686.1| - 0.018 15.5 1.7 0.83 10.1 0.1 2.8 2 1 1 3 3 2 0 Putative NAD(P)-binding XdhC_C PF13478.6 gi|336477545|ref|YP_004616686.1| - 0.019 15.4 0.1 1.9 9.0 0.0 2.6 2 0 0 2 2 2 0 XdhC Rossmann domain FAD_binding_3 PF01494.19 gi|336477545|ref|YP_004616686.1| - 0.02 14.1 1.0 0.095 11.9 0.2 2.4 3 0 0 3 3 3 0 FAD binding domain Lycopene_cycl PF05834.12 gi|336477545|ref|YP_004616686.1| - 0.023 13.7 3.6 0.028 13.5 0.4 2.5 4 0 0 4 4 4 0 Lycopene cyclase protein TrkA_N PF02254.18 gi|336477545|ref|YP_004616686.1| - 0.025 14.8 3.6 0.85 9.9 0.2 3.7 4 0 0 4 4 3 0 TrkA-N domain NAD_binding_2 PF03446.15 gi|336477545|ref|YP_004616686.1| - 0.03 14.5 0.9 1.9 8.7 0.1 2.8 3 0 0 3 3 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|336477545|ref|YP_004616686.1| - 0.031 13.9 0.3 0.56 9.8 0.2 2.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|336477545|ref|YP_004616686.1| - 0.037 14.3 1.0 6.1 7.1 0.0 2.8 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Amino_oxidase PF01593.24 gi|336477545|ref|YP_004616686.1| - 0.05 12.9 0.0 0.098 11.9 0.0 1.5 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 gi|336477545|ref|YP_004616686.1| - 0.065 12.6 6.3 0.18 11.1 3.1 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase adh_short PF00106.25 gi|336477546|ref|YP_004616687.1| - 8.4e-62 208.1 1.0 9.6e-62 207.9 1.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|336477546|ref|YP_004616687.1| - 3e-51 174.3 0.7 4.2e-51 173.8 0.7 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|336477546|ref|YP_004616687.1| - 1.1e-14 54.8 1.1 1.4e-14 54.4 1.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|336477546|ref|YP_004616687.1| - 2e-05 24.2 1.0 3.4e-05 23.4 1.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|336477546|ref|YP_004616687.1| - 8.7e-05 21.8 0.6 0.00011 21.5 0.6 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Sacchrp_dh_NADP PF03435.18 gi|336477546|ref|YP_004616687.1| - 0.0028 17.9 0.4 0.0045 17.2 0.4 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3Beta_HSD PF01073.19 gi|336477546|ref|YP_004616687.1| - 0.028 13.4 0.3 0.041 12.9 0.3 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family MccV PF17508.2 gi|336477546|ref|YP_004616687.1| - 0.5 11.0 2.7 2.7 8.6 0.5 2.2 2 0 0 2 2 2 0 Microcin V bacteriocin Acylphosphatase PF00708.18 gi|336477547|ref|YP_004616688.1| - 9.9e-28 96.4 0.0 1.1e-27 96.2 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF2871 PF11070.8 gi|336477547|ref|YP_004616688.1| - 0.0048 17.2 0.0 0.46 10.8 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2871) tRNA-Thr_ED PF08915.11 gi|336477548|ref|YP_004616689.1| - 6.8e-52 175.2 0.0 1.3e-51 174.3 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|336477548|ref|YP_004616689.1| - 3e-17 62.5 0.5 6.9e-17 61.4 0.5 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|336477548|ref|YP_004616689.1| - 2.5e-14 53.6 0.2 4.9e-14 52.7 0.2 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) PRC PF05239.16 gi|336477549|ref|YP_004616690.1| - 3.1e-07 30.4 0.3 4.1e-07 30.0 0.3 1.2 1 0 0 1 1 1 1 PRC-barrel domain ATG11 PF10377.9 gi|336477549|ref|YP_004616690.1| - 0.038 14.1 0.0 0.039 14.0 0.0 1.2 1 0 0 1 1 1 0 Autophagy-related protein 11 Pyr_redox_2 PF07992.14 gi|336477550|ref|YP_004616691.1| - 6.2e-52 176.7 0.7 8.1e-52 176.3 0.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336477550|ref|YP_004616691.1| - 2.2e-16 60.2 3.9 3.5e-15 56.3 0.0 2.8 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|336477550|ref|YP_004616691.1| - 4.5e-14 52.6 0.0 8.9e-14 51.7 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|336477550|ref|YP_004616691.1| - 2.3e-11 43.5 3.3 3.3e-10 39.7 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|336477550|ref|YP_004616691.1| - 4.7e-05 23.5 2.7 0.0029 17.8 0.5 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|336477550|ref|YP_004616691.1| - 0.00016 21.0 3.5 0.18 11.1 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|336477550|ref|YP_004616691.1| - 0.00078 18.6 3.0 0.00078 18.6 3.0 1.8 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 gi|336477550|ref|YP_004616691.1| - 0.0027 17.6 6.6 0.38 10.6 0.0 3.2 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|336477550|ref|YP_004616691.1| - 0.0035 16.5 3.8 0.069 12.2 1.0 3.1 4 0 0 4 4 4 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|336477550|ref|YP_004616691.1| - 0.0074 15.0 3.5 0.077 11.7 1.9 3.1 4 0 0 4 4 4 1 HI0933-like protein FAD_oxidored PF12831.7 gi|336477550|ref|YP_004616691.1| - 0.054 12.8 11.2 0.61 9.4 4.1 2.5 2 1 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_2 PF03446.15 gi|336477550|ref|YP_004616691.1| - 0.11 12.7 0.4 16 5.6 0.2 3.0 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|336477550|ref|YP_004616691.1| - 0.15 11.4 0.8 5.7 6.3 0.4 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|336477550|ref|YP_004616691.1| - 0.31 11.7 1.9 3.3 8.4 0.0 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent PAPS_reduct PF01507.19 gi|336477551|ref|YP_004616692.1| - 8.2e-42 143.2 0.0 1.2e-41 142.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_18 PF13746.6 gi|336477551|ref|YP_004616692.1| - 1.2e-05 25.4 5.0 3.6e-05 23.9 5.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336477551|ref|YP_004616692.1| - 0.0011 18.7 5.9 0.0011 18.7 5.9 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336477551|ref|YP_004616692.1| - 0.0019 18.3 1.5 0.0019 18.3 1.5 3.8 5 0 0 5 5 5 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336477551|ref|YP_004616692.1| - 0.0063 16.6 14.2 0.0063 16.6 14.2 3.2 4 1 0 4 4 4 1 4Fe-4S dicluster domain ATP_bind_3 PF01171.20 gi|336477551|ref|YP_004616692.1| - 0.0082 15.9 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 PP-loop family Fer4_8 PF13183.6 gi|336477551|ref|YP_004616692.1| - 0.019 15.4 0.6 0.019 15.4 0.6 3.6 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336477551|ref|YP_004616692.1| - 0.02 15.0 3.5 0.02 15.0 3.5 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336477551|ref|YP_004616692.1| - 0.021 15.4 0.9 0.021 15.4 0.9 3.7 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336477551|ref|YP_004616692.1| - 2.1 9.4 21.1 0.055 14.4 3.7 3.5 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Polysacc_synt PF01943.17 gi|336477552|ref|YP_004616693.1| - 6.5e-24 84.8 30.3 6.5e-24 84.8 30.3 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|336477552|ref|YP_004616693.1| - 7e-20 71.6 18.0 7e-20 71.6 18.0 3.9 3 2 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|336477552|ref|YP_004616693.1| - 7.1e-15 55.0 16.4 7.1e-15 55.0 16.4 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|336477552|ref|YP_004616693.1| - 1.1e-09 38.1 9.9 1.1e-09 38.1 9.9 3.9 3 1 1 4 4 4 1 MatE MurJ PF03023.14 gi|336477552|ref|YP_004616693.1| - 1.2e-09 37.3 37.3 1.2e-09 37.3 37.3 1.7 1 1 0 1 1 1 1 Lipid II flippase MurJ MannoseP_isomer PF01050.18 gi|336477553|ref|YP_004616694.1| - 3e-60 202.5 1.1 6.1e-60 201.5 1.1 1.5 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|336477553|ref|YP_004616694.1| - 1.9e-56 191.4 0.0 2.9e-56 190.8 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|336477553|ref|YP_004616694.1| - 9.8e-10 38.0 0.1 1.8e-09 37.2 0.1 1.5 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 gi|336477553|ref|YP_004616694.1| - 3.8e-07 30.6 0.0 6.1e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|336477553|ref|YP_004616694.1| - 0.00063 19.6 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Cupin_6 PF12852.7 gi|336477553|ref|YP_004616694.1| - 0.13 12.0 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Cupin NTP_transferase PF00483.23 gi|336477554|ref|YP_004616695.1| - 3.5e-30 105.4 0.0 4.9e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|336477554|ref|YP_004616695.1| - 1.3e-08 35.3 0.0 2.1e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 gi|336477554|ref|YP_004616695.1| - 0.0013 18.6 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.19 gi|336477554|ref|YP_004616695.1| - 0.0089 15.8 0.0 0.018 14.8 0.0 1.5 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|336477554|ref|YP_004616695.1| - 0.022 14.7 0.1 0.053 13.4 0.1 1.6 1 1 0 1 1 1 0 Cytidylyltransferase GDP_Man_Dehyd PF16363.5 gi|336477555|ref|YP_004616696.1| - 2.2e-165 550.0 0.1 2.5e-165 549.8 0.1 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|336477555|ref|YP_004616696.1| - 1e-77 260.9 0.1 1.3e-77 260.6 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|336477555|ref|YP_004616696.1| - 9.5e-07 28.2 0.0 1.6e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|336477555|ref|YP_004616696.1| - 2.5e-05 23.5 0.0 5.1e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|336477556|ref|YP_004616697.1| - 1.6e-84 283.2 0.0 1.9e-84 282.9 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|336477556|ref|YP_004616697.1| - 1.8e-23 83.5 0.0 7.5e-23 81.5 0.0 1.8 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|336477556|ref|YP_004616697.1| - 2.4e-09 36.7 0.0 5.4e-09 35.5 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|336477556|ref|YP_004616697.1| - 2.2e-08 33.6 0.0 4.2e-06 26.1 0.0 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|336477556|ref|YP_004616697.1| - 0.013 15.4 0.0 0.027 14.4 0.0 1.7 1 1 0 1 1 1 0 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|336477557|ref|YP_004616698.1| - 8.6e-59 199.6 0.0 2e-58 198.4 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|336477557|ref|YP_004616698.1| - 7e-52 176.3 0.0 8.9e-52 175.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|336477557|ref|YP_004616698.1| - 2.8e-10 39.7 0.0 4e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|336477557|ref|YP_004616698.1| - 8.5e-10 38.2 0.0 0.00041 19.6 0.0 2.3 1 1 1 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|336477557|ref|YP_004616698.1| - 3.4e-09 36.3 0.0 0.00021 20.5 0.1 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|336477557|ref|YP_004616698.1| - 2.1e-08 33.6 0.0 3.3e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|336477557|ref|YP_004616698.1| - 0.00095 18.7 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|336477557|ref|YP_004616698.1| - 0.022 14.7 0.0 0.067 13.1 0.0 1.8 1 1 0 1 1 1 0 NAD(P)H-binding UDPG_MGDP_dh_N PF03721.14 gi|336477557|ref|YP_004616698.1| - 0.031 13.8 0.0 0.065 12.8 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KR PF08659.10 gi|336477557|ref|YP_004616698.1| - 0.045 13.7 0.0 0.2 11.6 0.0 1.8 2 0 0 2 2 2 0 KR domain NmrA PF05368.13 gi|336477557|ref|YP_004616698.1| - 0.082 12.5 0.0 0.21 11.1 0.0 1.7 2 0 0 2 2 2 0 NmrA-like family AAA_7 PF12775.7 gi|336477557|ref|YP_004616698.1| - 0.16 11.5 0.1 10 5.6 0.1 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region Methyltransf_15 PF09445.10 gi|336477558|ref|YP_004616699.1| - 0.0063 16.1 0.1 0.0095 15.5 0.1 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.20 gi|336477558|ref|YP_004616699.1| - 0.08 12.0 0.7 0.25 10.4 0.0 1.9 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase DUF563 PF04577.14 gi|336477559|ref|YP_004616700.1| - 1.3e-50 172.5 0.0 2.2e-50 171.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF563) Methyltransf_21 PF05050.12 gi|336477560|ref|YP_004616701.1| - 1e-11 45.2 0.3 1.7e-11 44.5 0.3 1.5 1 1 0 1 1 1 1 Methyltransferase FkbM domain CBP_BcsQ PF06564.12 gi|336477560|ref|YP_004616701.1| - 0.17 11.3 0.0 0.24 10.8 0.0 1.1 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ Elf1 PF05129.13 gi|336477561|ref|YP_004616702.1| - 0.00066 19.7 0.4 0.0017 18.4 0.4 1.7 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zinc-ribbons_6 PF07191.12 gi|336477561|ref|YP_004616702.1| - 0.1 12.6 1.2 0.19 11.7 1.2 1.4 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.7 gi|336477561|ref|YP_004616702.1| - 0.16 12.0 0.5 0.28 11.2 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon Glycos_transf_2 PF00535.26 gi|336477562|ref|YP_004616703.1| - 1.5e-05 24.9 0.4 4.2e-05 23.4 0.4 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 2 GNT-I PF03071.15 gi|336477562|ref|YP_004616703.1| - 0.0036 16.1 0.3 0.012 14.4 0.2 1.8 2 0 0 2 2 2 1 GNT-I family Glyco_transf_25 PF01755.17 gi|336477562|ref|YP_004616703.1| - 0.11 12.3 1.2 0.18 11.6 0.6 1.7 1 1 0 1 1 1 0 Glycosyltransferase family 25 (LPS biosynthesis protein) Glycos_transf_1 PF00534.20 gi|336477563|ref|YP_004616704.1| - 1.6e-27 96.2 0.0 3.4e-27 95.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|336477563|ref|YP_004616704.1| - 1.4e-20 74.1 0.0 2.8e-20 73.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|336477563|ref|YP_004616704.1| - 1.1e-12 48.3 0.0 1.9e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|336477563|ref|YP_004616704.1| - 3.2e-09 37.1 0.0 5.7e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|336477563|ref|YP_004616704.1| - 0.072 13.5 0.0 0.19 12.2 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Glycos_transf_2 PF00535.26 gi|336477564|ref|YP_004616705.1| - 4.5e-24 85.2 0.9 6.5e-24 84.6 0.9 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|336477564|ref|YP_004616705.1| - 3.7e-10 40.1 0.0 5.1e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|336477564|ref|YP_004616705.1| - 1.1e-08 34.9 2.5 2.9e-08 33.5 2.5 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF4116 PF13475.6 gi|336477564|ref|YP_004616705.1| - 0.0011 18.6 8.5 0.0023 17.6 0.4 4.0 4 0 0 4 4 4 1 Domain of unknown function (DUF4116) GNT-I PF03071.15 gi|336477564|ref|YP_004616705.1| - 0.0082 14.9 0.1 0.012 14.3 0.1 1.2 1 0 0 1 1 1 1 GNT-I family Glyco_transf_4 PF13439.6 gi|336477565|ref|YP_004616706.1| - 1.5e-14 54.4 0.2 2.3e-14 53.8 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|336477565|ref|YP_004616706.1| - 4.6e-14 53.0 0.0 7.6e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|336477565|ref|YP_004616706.1| - 2.6e-12 46.6 0.0 5.4e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|336477565|ref|YP_004616706.1| - 1.4e-05 25.1 1.4 2.5e-05 24.3 1.4 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|336477565|ref|YP_004616706.1| - 3.1e-05 24.5 0.0 4.3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|336477565|ref|YP_004616706.1| - 6.4e-05 23.3 0.0 0.00013 22.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3880 PF12996.7 gi|336477565|ref|YP_004616706.1| - 0.023 14.8 0.1 0.13 12.3 0.0 2.3 2 0 0 2 2 2 0 DUF based on E. rectale Gene description (DUF3880) STT3 PF02516.14 gi|336477566|ref|YP_004616707.1| - 1.7e-30 106.4 33.1 1.7e-30 106.4 33.1 2.2 2 0 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|336477566|ref|YP_004616707.1| - 3.2e-27 94.7 1.2 7.3e-27 93.5 1.2 1.7 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain MRAP PF15183.6 gi|336477566|ref|YP_004616707.1| - 1.4 9.0 5.5 0.94 9.5 1.5 2.8 3 0 0 3 3 3 0 Melanocortin-2 receptor accessory protein family NTP_transferase PF00483.23 gi|336477567|ref|YP_004616708.1| - 5e-45 154.0 0.1 6.2e-45 153.7 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|336477567|ref|YP_004616708.1| - 1.4e-19 69.0 31.6 9.8e-09 34.6 1.4 4.8 2 1 4 6 6 6 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|336477567|ref|YP_004616708.1| - 5.9e-15 56.0 0.0 7.7e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|336477567|ref|YP_004616708.1| - 4.4e-07 29.5 15.3 4.9e-05 23.0 4.0 4.0 3 1 3 6 6 6 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|336477567|ref|YP_004616708.1| - 0.002 17.9 0.3 0.0053 16.5 0.0 1.8 2 1 1 3 3 3 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|336477567|ref|YP_004616708.1| - 0.0072 16.2 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 CTP_transf_3 PF02348.19 gi|336477567|ref|YP_004616708.1| - 0.021 14.7 0.1 0.029 14.3 0.1 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Fucokinase PF07959.12 gi|336477567|ref|YP_004616708.1| - 0.099 11.6 3.5 0.74 8.7 1.7 2.6 1 1 2 3 3 3 0 L-fucokinase SIS PF01380.22 gi|336477568|ref|YP_004616709.1| - 1e-56 190.4 1.1 2.9e-28 98.3 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|336477568|ref|YP_004616709.1| - 1.1e-17 64.4 0.0 2.8e-17 63.2 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|336477568|ref|YP_004616709.1| - 1.2e-10 41.3 0.0 2.5e-10 40.3 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|336477568|ref|YP_004616709.1| - 6.1e-05 22.1 0.0 0.00011 21.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|336477568|ref|YP_004616709.1| - 7.5e-05 22.8 0.0 0.036 14.1 0.0 3.4 3 0 0 3 3 3 1 SIS domain DUF5124 PF17160.4 gi|336477568|ref|YP_004616709.1| - 0.069 13.9 0.0 0.2 12.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5124) PGM_PMM_I PF02878.16 gi|336477569|ref|YP_004616710.1| - 7.3e-38 129.4 0.2 1.8e-37 128.1 0.1 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|336477569|ref|YP_004616710.1| - 1.8e-25 89.5 0.1 3.8e-25 88.5 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|336477569|ref|YP_004616710.1| - 2.9e-19 69.3 0.0 5.7e-19 68.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|336477569|ref|YP_004616710.1| - 1.2e-08 35.0 0.0 2.4e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain NTP_transferase PF00483.23 gi|336477570|ref|YP_004616711.1| - 1.9e-49 168.5 0.1 4.1e-49 167.4 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyl transferase Hexapep PF00132.24 gi|336477570|ref|YP_004616711.1| - 3.4e-15 55.1 33.0 3.6e-09 36.0 4.6 4.8 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|336477570|ref|YP_004616711.1| - 1.4e-14 54.7 0.0 2e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|336477570|ref|YP_004616711.1| - 2.8e-07 30.2 15.9 3.1e-06 26.8 2.8 4.5 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|336477570|ref|YP_004616711.1| - 0.0015 18.4 0.0 0.0025 17.6 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|336477570|ref|YP_004616711.1| - 0.005 15.0 2.7 0.0085 14.3 2.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) CTP_transf_3 PF02348.19 gi|336477570|ref|YP_004616711.1| - 0.035 14.0 0.0 0.053 13.4 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase DUF1328 PF07043.13 gi|336477571|ref|YP_004616712.1| - 7.5e-12 45.3 16.5 1e-11 44.8 16.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) SecG PF03840.14 gi|336477571|ref|YP_004616712.1| - 0.16 12.0 13.2 0.15 12.2 5.3 2.0 1 1 1 2 2 2 0 Preprotein translocase SecG subunit DUF131 PF01998.17 gi|336477571|ref|YP_004616712.1| - 7.2 6.3 15.8 0.9 9.2 5.5 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF131 AAA_14 PF13173.6 gi|336477572|ref|YP_004616713.1| - 5.7e-35 120.2 0.1 1.3e-34 119.0 0.1 1.7 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|336477572|ref|YP_004616713.1| - 7.6e-14 51.9 0.2 1.3e-13 51.2 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|336477572|ref|YP_004616713.1| - 0.00015 21.8 0.1 0.0089 16.0 0.0 2.4 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|336477572|ref|YP_004616713.1| - 0.0002 21.7 0.0 0.49 10.7 0.0 2.7 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|336477572|ref|YP_004616713.1| - 0.00038 20.9 0.0 0.25 11.7 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain DUF3695 PF12494.8 gi|336477572|ref|YP_004616713.1| - 0.012 15.5 0.1 0.026 14.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3695) NB-ARC PF00931.22 gi|336477572|ref|YP_004616713.1| - 0.031 13.5 0.0 3 6.9 0.1 2.4 2 0 0 2 2 2 0 NB-ARC domain UTP15_C PF09384.10 gi|336477572|ref|YP_004616713.1| - 0.034 13.8 0.0 0.14 11.8 0.0 1.9 2 0 0 2 2 2 0 UTP15 C terminal NUMOD1 PF07453.13 gi|336477572|ref|YP_004616713.1| - 0.047 14.0 0.0 0.14 12.4 0.0 1.9 1 0 0 1 1 1 0 NUMOD1 domain HTH_10 PF04967.12 gi|336477572|ref|YP_004616713.1| - 0.086 12.7 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain AAA PF00004.29 gi|336477572|ref|YP_004616713.1| - 0.12 12.8 0.0 0.37 11.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SinI PF08671.10 gi|336477572|ref|YP_004616713.1| - 0.44 10.4 3.0 9.8 6.1 0.3 3.1 3 0 0 3 3 3 0 Anti-repressor SinI Aconitase_C PF00694.19 gi|336477573|ref|YP_004616714.1| - 1.1e-19 71.0 0.0 2.4e-19 70.0 0.0 1.4 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|336477573|ref|YP_004616714.1| - 0.0039 16.8 0.0 0.058 13.0 0.0 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.20 gi|336477575|ref|YP_004616716.1| - 1.2e-100 337.1 0.0 1.3e-100 336.9 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase T2SSF PF00482.23 gi|336477576|ref|YP_004616717.1| - 4.9e-15 55.6 0.1 2.3e-11 43.7 0.1 3.5 4 1 1 5 5 5 2 Type II secretion system (T2SS), protein F DUF4131 PF13567.6 gi|336477576|ref|YP_004616717.1| - 0.066 12.9 1.7 0.11 12.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) EI24 PF07264.11 gi|336477576|ref|YP_004616717.1| - 0.56 10.4 14.2 0.013 15.8 4.1 2.7 3 1 0 3 3 3 0 Etoposide-induced protein 2.4 (EI24) BNIP3 PF06553.12 gi|336477576|ref|YP_004616717.1| - 1.5 8.5 6.2 0.14 11.9 0.4 1.9 2 0 0 2 2 2 0 BNIP3 T2SSE PF00437.20 gi|336477577|ref|YP_004616718.1| - 1.5e-37 129.1 0.0 1.3e-33 116.3 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_29 PF13555.6 gi|336477577|ref|YP_004616718.1| - 0.00011 21.8 0.0 0.00027 20.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Intein_splicing PF14890.6 gi|336477577|ref|YP_004616718.1| - 0.00013 21.9 0.0 0.00031 20.7 0.0 1.6 1 1 0 1 1 1 1 Intein splicing domain AAA_7 PF12775.7 gi|336477577|ref|YP_004616718.1| - 0.19 11.2 0.2 0.45 10.0 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region ATPase PF06745.13 gi|336477578|ref|YP_004616719.1| - 7.1e-17 61.5 0.3 9.3e-17 61.1 0.3 1.1 1 0 0 1 1 1 1 KaiC Bac_DnaA PF00308.18 gi|336477578|ref|YP_004616719.1| - 0.00014 21.8 0.8 0.13 12.1 0.1 2.1 1 1 0 2 2 2 2 Bacterial dnaA protein ABC_tran PF00005.27 gi|336477578|ref|YP_004616719.1| - 0.00058 20.4 0.0 0.00081 19.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_25 PF13481.6 gi|336477578|ref|YP_004616719.1| - 0.00067 19.3 0.0 0.0013 18.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|336477578|ref|YP_004616719.1| - 0.00081 19.4 0.0 0.0013 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|336477578|ref|YP_004616719.1| - 0.0015 18.9 0.3 0.0033 17.7 0.3 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|336477578|ref|YP_004616719.1| - 0.0016 18.4 0.0 0.0039 17.1 0.0 1.6 1 1 0 1 1 1 1 NACHT domain DnaB_C PF03796.15 gi|336477578|ref|YP_004616719.1| - 0.0023 17.3 0.0 0.0053 16.1 0.0 1.5 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|336477578|ref|YP_004616719.1| - 0.004 16.9 0.2 0.012 15.4 0.2 1.7 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|336477578|ref|YP_004616719.1| - 0.0048 16.6 0.1 0.0085 15.7 0.1 1.5 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_14 PF13173.6 gi|336477578|ref|YP_004616719.1| - 0.0058 16.7 1.7 0.046 13.7 1.7 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|336477578|ref|YP_004616719.1| - 0.0061 17.1 0.0 0.0095 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|336477578|ref|YP_004616719.1| - 0.0068 16.2 0.4 0.04 13.6 0.4 2.0 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|336477578|ref|YP_004616719.1| - 0.011 15.4 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|336477578|ref|YP_004616719.1| - 0.012 15.7 0.1 0.02 15.0 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase CobU PF02283.16 gi|336477578|ref|YP_004616719.1| - 0.012 15.2 0.3 0.089 12.4 0.1 2.0 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_23 PF13476.6 gi|336477578|ref|YP_004616719.1| - 0.015 15.8 0.9 0.022 15.3 0.9 1.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|336477578|ref|YP_004616719.1| - 0.016 14.5 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 gi|336477578|ref|YP_004616719.1| - 0.017 14.4 0.2 0.028 13.7 0.2 1.4 1 1 0 1 1 1 0 Rad51 CLP1_P PF16575.5 gi|336477578|ref|YP_004616719.1| - 0.019 14.8 0.7 2.4 7.9 0.1 2.2 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MipZ PF09140.11 gi|336477578|ref|YP_004616719.1| - 0.023 14.0 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ APS_kinase PF01583.20 gi|336477578|ref|YP_004616719.1| - 0.024 14.6 0.1 0.049 13.5 0.1 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_16 PF13191.6 gi|336477578|ref|YP_004616719.1| - 0.033 14.6 0.0 0.044 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain P-mevalo_kinase PF04275.14 gi|336477578|ref|YP_004616719.1| - 0.034 14.1 0.3 3.1 7.8 0.0 2.2 2 0 0 2 2 2 0 Phosphomevalonate kinase RsgA_GTPase PF03193.16 gi|336477578|ref|YP_004616719.1| - 0.037 13.9 0.1 0.089 12.7 0.1 1.6 1 0 0 1 1 1 0 RsgA GTPase NTPase_1 PF03266.15 gi|336477578|ref|YP_004616719.1| - 0.039 13.9 2.5 0.45 10.4 0.1 2.2 2 1 0 2 2 2 0 NTPase Thymidylate_kin PF02223.17 gi|336477578|ref|YP_004616719.1| - 0.044 13.5 0.2 0.18 11.5 0.1 1.9 2 0 0 2 2 2 0 Thymidylate kinase AAA_29 PF13555.6 gi|336477578|ref|YP_004616719.1| - 0.047 13.4 0.1 0.096 12.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PRK PF00485.18 gi|336477578|ref|YP_004616719.1| - 0.055 13.2 0.1 0.089 12.5 0.1 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.6 gi|336477578|ref|YP_004616719.1| - 0.062 13.5 0.1 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|336477578|ref|YP_004616719.1| - 0.064 13.3 0.1 0.098 12.7 0.1 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_35 PF14516.6 gi|336477578|ref|YP_004616719.1| - 0.07 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.22 gi|336477578|ref|YP_004616719.1| - 0.081 13.3 0.1 0.16 12.4 0.1 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.7 gi|336477578|ref|YP_004616719.1| - 0.084 11.8 0.0 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain KTI12 PF08433.10 gi|336477578|ref|YP_004616719.1| - 0.088 12.2 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|336477578|ref|YP_004616719.1| - 0.11 12.7 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arch_flagellin PF01917.16 gi|336477579|ref|YP_004616720.1| - 1.9e-20 73.7 2.1 2.2e-20 73.5 2.1 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|336477580|ref|YP_004616721.1| - 5.6e-07 29.9 0.5 3.8e-06 27.2 0.5 1.9 1 1 0 1 1 1 1 Archaebacterial flagellin SQS_PSY PF00494.19 gi|336477580|ref|YP_004616721.1| - 0.07 12.6 0.0 0.086 12.3 0.0 1.0 1 0 0 1 1 1 0 Squalene/phytoene synthase PAGK PF15284.6 gi|336477580|ref|YP_004616721.1| - 0.086 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Phage-encoded virulence factor FixH PF05751.11 gi|336477580|ref|YP_004616721.1| - 0.11 12.6 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 FixH Arch_fla_DE PF04659.13 gi|336477581|ref|YP_004616722.1| - 2.7e-28 97.7 0.0 7.8e-28 96.2 0.0 1.8 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|336477581|ref|YP_004616722.1| - 9.1e-24 83.6 14.8 2.6e-20 72.6 5.4 4.3 4 1 0 4 4 4 2 Flagella accessory protein C (FlaC) CENP-F_leu_zip PF10473.9 gi|336477581|ref|YP_004616722.1| - 1e-05 25.6 8.3 0.0095 16.0 1.9 2.3 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 gi|336477581|ref|YP_004616722.1| - 0.00052 20.0 9.0 0.14 12.2 0.4 3.3 1 1 2 3 3 3 1 Protein of unknown function (DUF1664) Lebercilin PF15619.6 gi|336477581|ref|YP_004616722.1| - 0.001 18.8 2.8 0.35 10.5 0.0 2.2 2 0 0 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease Sec34 PF04136.15 gi|336477581|ref|YP_004616722.1| - 0.0011 18.8 6.4 0.038 13.9 0.8 2.4 1 1 0 2 2 2 1 Sec34-like family CCDC154 PF15450.6 gi|336477581|ref|YP_004616722.1| - 0.0018 16.9 3.0 0.0025 16.4 3.0 1.1 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 154 Laminin_II PF06009.12 gi|336477581|ref|YP_004616722.1| - 0.0061 16.6 4.3 0.033 14.2 0.1 2.5 1 1 2 3 3 3 1 Laminin Domain II BLOC1_2 PF10046.9 gi|336477581|ref|YP_004616722.1| - 0.0089 16.3 8.8 0.3 11.4 0.7 3.0 2 1 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Jnk-SapK_ap_N PF09744.9 gi|336477581|ref|YP_004616722.1| - 0.01 16.1 6.8 0.027 14.7 0.7 2.2 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Tropomyosin_1 PF12718.7 gi|336477581|ref|YP_004616722.1| - 0.014 15.5 6.1 0.56 10.4 0.5 2.4 2 0 0 2 2 2 0 Tropomyosin like Cauli_AT PF03233.13 gi|336477581|ref|YP_004616722.1| - 0.021 14.7 2.5 2.7 7.9 0.1 2.5 2 0 0 2 2 2 0 Aphid transmission protein EzrA PF06160.12 gi|336477581|ref|YP_004616722.1| - 0.022 13.0 11.2 0.091 10.9 1.4 2.2 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA ADIP PF11559.8 gi|336477581|ref|YP_004616722.1| - 0.023 14.8 3.8 0.64 10.1 0.3 2.3 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF948 PF06103.11 gi|336477581|ref|YP_004616722.1| - 0.034 14.4 1.4 16 5.8 0.1 3.2 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) RmuC PF02646.16 gi|336477581|ref|YP_004616722.1| - 0.046 12.9 2.7 0.71 8.9 0.2 2.5 2 1 0 2 2 2 0 RmuC family NPV_P10 PF05531.12 gi|336477581|ref|YP_004616722.1| - 0.049 14.1 2.4 12 6.5 0.0 3.1 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.6 gi|336477581|ref|YP_004616722.1| - 0.056 12.1 7.2 0.33 9.5 0.6 2.0 1 1 1 2 2 2 0 AAA domain DHR10 PF18595.1 gi|336477581|ref|YP_004616722.1| - 0.059 13.4 9.5 0.17 12.0 1.2 2.9 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain DUF4618 PF15397.6 gi|336477581|ref|YP_004616722.1| - 0.061 12.7 4.3 1.9 7.8 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4618) MCPsignal PF00015.21 gi|336477581|ref|YP_004616722.1| - 0.064 13.1 5.4 0.28 11.0 0.6 2.4 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Snapin_Pallidin PF14712.6 gi|336477581|ref|YP_004616722.1| - 0.085 13.3 0.0 0.085 13.3 0.0 4.0 4 1 1 5 5 3 0 Snapin/Pallidin Spc7 PF08317.11 gi|336477581|ref|YP_004616722.1| - 0.1 11.5 6.6 0.26 10.1 0.5 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF16 PF01519.16 gi|336477581|ref|YP_004616722.1| - 0.1 13.1 8.8 0.32 11.5 1.3 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF4201 PF13870.6 gi|336477581|ref|YP_004616722.1| - 0.11 12.2 3.1 0.33 10.7 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) Fib_alpha PF08702.10 gi|336477581|ref|YP_004616722.1| - 0.11 12.6 9.4 0.65 10.2 0.9 2.8 2 1 1 3 3 2 0 Fibrinogen alpha/beta chain family Vps5 PF09325.10 gi|336477581|ref|YP_004616722.1| - 0.11 12.0 4.6 0.71 9.4 0.3 2.3 2 0 0 2 2 2 0 Vps5 C terminal like Syntaxin-6_N PF09177.11 gi|336477581|ref|YP_004616722.1| - 0.12 12.9 5.9 1.9 9.1 0.5 2.8 1 1 2 3 3 3 0 Syntaxin 6, N-terminal DUF713 PF05218.14 gi|336477581|ref|YP_004616722.1| - 0.12 12.1 3.5 2.9 7.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF713) STAT_alpha PF01017.20 gi|336477581|ref|YP_004616722.1| - 0.14 12.1 2.6 1.7 8.5 0.3 2.3 2 0 0 2 2 2 0 STAT protein, all-alpha domain ORF6C PF10552.9 gi|336477581|ref|YP_004616722.1| - 0.14 12.2 5.2 1.1 9.3 0.8 3.0 2 1 0 2 2 2 0 ORF6C domain CALCOCO1 PF07888.11 gi|336477581|ref|YP_004616722.1| - 0.15 10.9 6.9 0.14 11.0 1.1 2.1 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like CCDC144C PF14915.6 gi|336477581|ref|YP_004616722.1| - 0.16 11.1 5.2 0.17 11.0 1.1 2.1 2 0 0 2 2 2 0 CCDC144C protein coiled-coil region Fzo_mitofusin PF04799.13 gi|336477581|ref|YP_004616722.1| - 0.17 11.4 2.3 5.3 6.6 0.1 3.2 2 1 1 3 3 3 0 fzo-like conserved region Tropomyosin PF00261.20 gi|336477581|ref|YP_004616722.1| - 0.23 10.8 10.2 1.1 8.6 1.0 3.0 2 1 1 3 3 3 0 Tropomyosin Com_YlbF PF06133.11 gi|336477581|ref|YP_004616722.1| - 0.23 12.1 6.1 1.2 9.8 0.3 2.3 2 0 0 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA FapA PF03961.13 gi|336477581|ref|YP_004616722.1| - 0.26 9.8 7.1 0.4 9.2 0.3 2.2 1 1 1 2 2 2 0 Flagellar Assembly Protein A FPP PF05911.11 gi|336477581|ref|YP_004616722.1| - 0.28 9.3 8.7 0.1 10.7 1.4 1.9 1 1 0 2 2 2 0 Filament-like plant protein, long coiled-coil COG6 PF06419.11 gi|336477581|ref|YP_004616722.1| - 0.34 9.1 6.7 0.39 8.9 0.9 2.3 2 1 0 2 2 2 0 Conserved oligomeric complex COG6 bZIP_1 PF00170.21 gi|336477581|ref|YP_004616722.1| - 0.34 11.1 11.9 3.7 7.7 2.1 4.0 3 1 2 5 5 3 0 bZIP transcription factor XhlA PF10779.9 gi|336477581|ref|YP_004616722.1| - 0.39 11.0 11.7 0.55 10.5 0.1 4.4 3 2 1 4 4 4 0 Haemolysin XhlA SH3BP5 PF05276.14 gi|336477581|ref|YP_004616722.1| - 0.44 10.3 3.6 4.1 7.1 0.2 2.3 2 0 0 2 2 2 0 SH3 domain-binding protein 5 (SH3BP5) ZapB PF06005.12 gi|336477581|ref|YP_004616722.1| - 0.47 10.9 5.6 8.8 6.9 0.2 3.3 2 1 0 2 2 2 0 Cell division protein ZapB Phage_HK97_TLTM PF06120.11 gi|336477581|ref|YP_004616722.1| - 0.48 9.6 5.1 0.4 9.8 1.2 2.1 1 1 1 2 2 2 0 Tail length tape measure protein Taxilin PF09728.9 gi|336477581|ref|YP_004616722.1| - 0.48 9.5 8.3 3.2 6.8 8.4 1.9 1 1 0 1 1 1 0 Myosin-like coiled-coil protein GIT1_C PF12205.8 gi|336477581|ref|YP_004616722.1| - 0.5 10.5 2.7 5 7.3 0.4 2.3 1 1 1 2 2 2 0 G protein-coupled receptor kinase-interacting protein 1 C term HBM PF16591.5 gi|336477581|ref|YP_004616722.1| - 0.51 9.7 3.6 8.8 5.7 3.5 2.3 1 1 0 1 1 1 0 Helical bimodular sensor domain Rootletin PF15035.6 gi|336477581|ref|YP_004616722.1| - 0.7 9.9 3.8 9.4 6.2 0.2 2.4 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion SHE3 PF17078.5 gi|336477581|ref|YP_004616722.1| - 0.73 9.5 10.7 3.9 7.1 1.5 3.0 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 Prominin PF05478.11 gi|336477581|ref|YP_004616722.1| - 0.73 7.7 5.4 1.6 6.6 0.3 2.0 1 1 0 2 2 2 0 Prominin PspB PF06667.12 gi|336477581|ref|YP_004616722.1| - 0.74 9.9 4.1 18 5.5 0.1 3.8 2 1 2 4 4 4 0 Phage shock protein B Fmp27_WPPW PF10359.9 gi|336477581|ref|YP_004616722.1| - 0.81 8.5 7.7 0.36 9.6 1.0 2.3 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain CorA PF01544.18 gi|336477581|ref|YP_004616722.1| - 1.1 8.5 8.1 7 5.9 1.1 2.3 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein GAS PF13851.6 gi|336477581|ref|YP_004616722.1| - 1.1 8.6 8.8 3.6 6.9 2.9 2.5 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding ERM PF00769.19 gi|336477581|ref|YP_004616722.1| - 1.2 8.9 6.6 7.5 6.3 0.2 2.4 2 1 0 2 2 2 0 Ezrin/radixin/moesin family APG17 PF04108.12 gi|336477581|ref|YP_004616722.1| - 1.2 8.2 7.7 3.7 6.6 1.8 2.1 1 1 1 2 2 2 0 Autophagy protein Apg17 DegS PF05384.11 gi|336477581|ref|YP_004616722.1| - 1.2 8.6 8.4 10 5.6 0.2 3.4 3 1 0 3 3 3 0 Sensor protein DegS DUF812 PF05667.11 gi|336477581|ref|YP_004616722.1| - 1.2 7.9 10.7 2.8 6.7 2.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Fez1 PF06818.15 gi|336477581|ref|YP_004616722.1| - 1.4 9.3 6.9 0.81 10.1 0.5 2.3 1 1 1 2 2 2 0 Fez1 CC2-LZ PF16516.5 gi|336477581|ref|YP_004616722.1| - 1.9 8.9 6.3 1.6 9.1 0.5 2.8 3 1 1 4 4 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Prefoldin_2 PF01920.20 gi|336477581|ref|YP_004616722.1| - 2.1 8.3 8.2 14 5.7 2.0 3.4 2 1 0 2 2 2 0 Prefoldin subunit DUF4164 PF13747.6 gi|336477581|ref|YP_004616722.1| - 2.8 8.3 7.0 9.2 6.6 1.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) Spc24 PF08286.11 gi|336477581|ref|YP_004616722.1| - 3.3 8.0 10.1 2.6 8.3 1.0 3.3 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 DASH_Dam1 PF08653.10 gi|336477581|ref|YP_004616722.1| - 3.4 7.5 13.4 9.1 6.2 1.2 4.7 3 2 2 5 5 4 0 DASH complex subunit Dam1 Syntaxin_2 PF14523.6 gi|336477581|ref|YP_004616722.1| - 4 7.9 6.0 6.7 7.1 0.6 2.9 1 1 2 3 3 3 0 Syntaxin-like protein DUF3450 PF11932.8 gi|336477581|ref|YP_004616722.1| - 4.3 6.6 6.4 2.3 7.5 0.4 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) Tektin PF03148.14 gi|336477581|ref|YP_004616722.1| - 6.5 5.4 9.4 10 4.8 1.6 2.4 2 1 0 2 2 2 0 Tektin family TMPIT PF07851.13 gi|336477581|ref|YP_004616722.1| - 8.1 5.6 6.3 9.3 5.4 0.3 2.1 1 1 1 2 2 2 0 TMPIT-like protein PI3K_P85_iSH2 PF16454.5 gi|336477581|ref|YP_004616722.1| - 8.7 5.9 9.1 27 4.3 6.5 2.9 2 1 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF4200 PF13863.6 gi|336477581|ref|YP_004616722.1| - 8.9 6.7 8.8 12 6.3 0.9 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) Methyltransf_15 PF09445.10 gi|336477582|ref|YP_004616723.1| - 4.1e-10 39.5 0.0 5.9e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.6 gi|336477582|ref|YP_004616723.1| - 3.2e-09 36.7 0.0 5.4e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336477582|ref|YP_004616723.1| - 5.1e-09 36.7 0.0 9e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|336477582|ref|YP_004616723.1| - 9e-07 28.5 0.0 1.4e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.12 gi|336477582|ref|YP_004616723.1| - 1.2e-06 29.1 0.0 2.1e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|336477582|ref|YP_004616723.1| - 1.4e-05 24.3 0.0 2e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|336477582|ref|YP_004616723.1| - 0.00011 21.8 0.0 0.00017 21.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|336477582|ref|YP_004616723.1| - 0.00012 21.3 0.0 0.00017 20.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 gi|336477582|ref|YP_004616723.1| - 0.00026 20.4 0.0 0.00045 19.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|336477582|ref|YP_004616723.1| - 0.0009 19.2 0.1 0.0022 17.9 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain PCMT PF01135.19 gi|336477582|ref|YP_004616723.1| - 0.003 17.3 0.0 0.0053 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CmcI PF04989.12 gi|336477582|ref|YP_004616723.1| - 0.004 16.9 0.0 0.0063 16.2 0.0 1.2 1 0 0 1 1 1 1 Cephalosporin hydroxylase Cons_hypoth95 PF03602.15 gi|336477582|ref|YP_004616723.1| - 0.0071 16.0 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|336477582|ref|YP_004616723.1| - 0.011 16.5 0.0 0.021 15.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|336477582|ref|YP_004616723.1| - 0.013 15.1 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DNA_methylase PF00145.17 gi|336477582|ref|YP_004616723.1| - 0.17 11.2 0.1 0.25 10.6 0.1 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase CMAS PF02353.20 gi|336477582|ref|YP_004616723.1| - 0.23 10.7 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Response_reg PF00072.24 gi|336477583|ref|YP_004616724.1| - 1.1e-28 99.6 1.8 1.3e-28 99.4 1.8 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Foamy_virus_ENV PF03408.14 gi|336477583|ref|YP_004616724.1| - 0.15 9.8 0.0 0.18 9.6 0.0 1.0 1 0 0 1 1 1 0 Foamy virus envelope protein Response_reg PF00072.24 gi|336477584|ref|YP_004616725.1| - 1.5e-30 105.6 0.9 2.7e-30 104.8 0.9 1.4 1 0 0 1 1 1 1 Response regulator receiver domain tRNA-synt_2c PF01411.19 gi|336477585|ref|YP_004616726.1| - 3.7e-131 438.3 0.0 4.7e-131 438.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|336477585|ref|YP_004616726.1| - 3.5e-20 72.8 5.7 6.9e-20 71.9 5.7 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|336477585|ref|YP_004616726.1| - 5.9e-12 45.5 0.3 1.3e-11 44.4 0.3 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain eIF-1a PF01176.19 gi|336477585|ref|YP_004616726.1| - 0.14 12.0 0.2 0.38 10.6 0.2 1.7 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 SurE PF01975.17 gi|336477586|ref|YP_004616727.1| - 1.3e-53 181.6 0.0 1.6e-53 181.4 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Radical_SAM PF04055.21 gi|336477588|ref|YP_004616729.1| - 4e-29 102.1 0.1 6.3e-29 101.5 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|336477588|ref|YP_004616729.1| - 9.7e-17 61.1 0.9 2.5e-16 59.8 0.0 2.0 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|336477588|ref|YP_004616729.1| - 5.7e-08 33.1 0.0 9.9e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|336477588|ref|YP_004616729.1| - 8.7e-06 25.9 0.1 1.6e-05 25.0 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrom_C PF00034.21 gi|336477588|ref|YP_004616729.1| - 1.5 10.0 0.0 1.5 10.0 0.0 2.8 3 0 0 3 3 3 0 Cytochrome c GATase_3 PF07685.14 gi|336477589|ref|YP_004616730.1| - 2.8e-33 115.2 0.0 4e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|336477589|ref|YP_004616730.1| - 2.9e-22 79.5 1.9 5.3e-20 72.1 1.9 2.3 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|336477589|ref|YP_004616730.1| - 2.2e-19 69.8 0.0 3.8e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|336477589|ref|YP_004616730.1| - 0.0059 16.1 0.1 0.71 9.3 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|336477589|ref|YP_004616730.1| - 0.03 14.2 0.6 0.055 13.4 0.6 1.4 1 0 0 1 1 1 0 AAA domain DUF1611 PF07755.11 gi|336477589|ref|YP_004616730.1| - 0.044 13.0 0.8 0.12 11.6 0.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain ParA PF10609.9 gi|336477589|ref|YP_004616730.1| - 0.11 11.9 1.3 0.23 10.9 1.3 1.5 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase MobB PF03205.14 gi|336477589|ref|YP_004616730.1| - 0.12 12.3 0.8 0.31 10.9 0.2 2.0 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MipZ PF09140.11 gi|336477589|ref|YP_004616730.1| - 0.14 11.4 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ FTHFS PF01268.19 gi|336477589|ref|YP_004616730.1| - 0.17 10.1 0.3 0.25 9.5 0.3 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Peptidase_S51 PF03575.17 gi|336477589|ref|YP_004616730.1| - 0.18 11.4 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 DNA_primase_lrg PF04104.14 gi|336477590|ref|YP_004616731.1| - 2.2e-33 115.8 0.0 6e-33 114.4 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Sox_N PF12444.8 gi|336477590|ref|YP_004616731.1| - 0.04 15.1 0.0 0.084 14.0 0.0 1.5 1 0 0 1 1 1 0 Sox developmental protein N terminal PCNA_N PF00705.18 gi|336477591|ref|YP_004616732.1| - 1.4e-14 53.9 0.5 4.4e-14 52.3 0.1 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|336477591|ref|YP_004616732.1| - 5e-10 39.6 0.0 3.7e-08 33.6 0.0 2.8 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|336477591|ref|YP_004616732.1| - 0.0033 16.5 0.0 0.18 10.8 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|336477591|ref|YP_004616732.1| - 0.011 15.2 0.0 0.031 13.7 0.0 1.7 2 0 0 2 2 2 0 Rad9 TFIIS_C PF01096.18 gi|336477592|ref|YP_004616733.1| - 2.1e-18 65.9 16.9 4e-18 65.0 5.0 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|336477592|ref|YP_004616733.1| - 6.8e-09 35.5 19.5 1.6e-08 34.3 3.5 3.2 3 0 0 3 3 3 2 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|336477592|ref|YP_004616733.1| - 5.6e-07 29.4 7.7 0.00067 19.5 0.4 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|336477592|ref|YP_004616733.1| - 1.9e-05 24.5 11.6 0.00024 21.0 1.1 2.5 2 1 0 2 2 2 2 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|336477592|ref|YP_004616733.1| - 0.00012 22.0 4.2 0.12 12.3 0.5 2.5 2 0 0 2 2 2 2 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|336477592|ref|YP_004616733.1| - 0.0002 20.6 8.7 0.00041 19.7 2.4 2.9 3 0 0 3 3 3 2 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|336477592|ref|YP_004616733.1| - 0.00065 19.6 5.3 0.18 11.7 0.1 3.7 3 1 0 3 3 3 1 Nudix N-terminal DNA_RNApol_7kD PF03604.13 gi|336477592|ref|YP_004616733.1| - 0.0017 18.0 7.8 0.52 10.0 0.0 3.2 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit IBR PF01485.21 gi|336477592|ref|YP_004616733.1| - 0.0017 18.6 11.9 0.052 13.8 3.7 2.7 2 1 1 3 3 3 2 IBR domain, a half RING-finger domain DUF2387 PF09526.10 gi|336477592|ref|YP_004616733.1| - 0.003 17.7 7.3 0.37 11.0 0.9 2.3 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.6 gi|336477592|ref|YP_004616733.1| - 0.0072 16.0 17.3 1.6 8.6 0.3 4.1 4 0 0 4 4 4 2 zinc-ribbon domain TackOD1 PF18551.1 gi|336477592|ref|YP_004616733.1| - 0.0081 15.8 8.5 0.13 11.9 8.6 2.4 1 1 0 1 1 1 1 Thaumarchaeal output domain 1 zinc_ribbon_4 PF13717.6 gi|336477592|ref|YP_004616733.1| - 0.011 15.6 17.4 1.8 8.6 0.1 4.1 3 1 0 3 3 3 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|336477592|ref|YP_004616733.1| - 0.016 15.2 8.6 0.03 14.3 2.0 2.9 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger DZR PF12773.7 gi|336477592|ref|YP_004616733.1| - 0.034 14.2 12.3 5.2 7.2 12.5 2.8 1 1 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|336477592|ref|YP_004616733.1| - 0.05 13.5 8.4 0.13 12.3 1.2 2.9 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-ZPR1 PF03367.13 gi|336477592|ref|YP_004616733.1| - 0.052 13.4 6.2 0.34 10.8 0.1 2.4 2 1 0 2 2 2 0 ZPR1 zinc-finger domain HypA PF01155.19 gi|336477592|ref|YP_004616733.1| - 0.054 13.5 0.8 0.054 13.5 0.8 2.8 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|336477592|ref|YP_004616733.1| - 0.056 13.3 8.5 1.4 8.9 0.3 2.5 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RING_7 PF02591.15 gi|336477592|ref|YP_004616733.1| - 0.059 13.6 4.3 1.4 9.2 0.0 3.7 4 0 0 4 4 4 0 C4-type zinc ribbon domain zf-RRN7 PF11781.8 gi|336477592|ref|YP_004616733.1| - 0.073 12.8 6.5 2.1 8.1 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|336477592|ref|YP_004616733.1| - 0.076 12.5 12.9 1.2 8.7 2.0 3.2 2 2 1 3 3 3 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|336477592|ref|YP_004616733.1| - 0.1 12.6 11.0 0.14 12.1 1.9 2.6 2 1 0 2 2 2 0 zinc-ribbons A2L_zn_ribbon PF08792.10 gi|336477592|ref|YP_004616733.1| - 0.12 12.1 17.1 0.3 10.9 3.4 4.1 3 1 1 4 4 4 0 A2L zinc ribbon domain zf-ACC PF17848.1 gi|336477592|ref|YP_004616733.1| - 0.34 11.0 19.6 0.51 10.4 0.5 4.2 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Cytochrom_c3_2 PF14537.6 gi|336477592|ref|YP_004616733.1| - 0.7 10.4 7.6 8.8 6.9 7.6 2.4 1 1 0 1 1 1 0 Cytochrome c3 zf-NADH-PPase PF09297.11 gi|336477592|ref|YP_004616733.1| - 0.8 9.4 9.2 10 5.9 0.2 3.2 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain GFA PF04828.14 gi|336477592|ref|YP_004616733.1| - 1.2 9.5 8.8 0.93 9.9 0.3 2.9 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Terminase_GpA PF05876.12 gi|336477592|ref|YP_004616733.1| - 1.5 7.3 6.5 0.2 10.2 1.8 1.7 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) Ribosomal_S27e PF01667.17 gi|336477592|ref|YP_004616733.1| - 1.6 8.5 9.4 2.1 8.1 0.0 3.3 3 1 0 3 3 3 0 Ribosomal protein S27 UPF0547 PF10571.9 gi|336477592|ref|YP_004616733.1| - 1.6 8.9 12.4 2 8.6 0.1 3.8 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Anti-TRAP PF15777.5 gi|336477592|ref|YP_004616733.1| - 1.6 8.7 9.6 8.4 6.4 0.0 3.6 3 1 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein Gmx_para_CXXCG PF09535.10 gi|336477592|ref|YP_004616733.1| - 3 7.0 6.2 2.8 7.1 0.1 2.7 1 1 2 3 3 3 0 Protein of unknown function (Gmx_para_CXXCG) zinc_ribbon_15 PF17032.5 gi|336477592|ref|YP_004616733.1| - 3.2 8.6 14.2 0.09 13.5 1.4 3.0 1 1 0 3 3 3 0 zinc-ribbon family Zn-ribbon_8 PF09723.10 gi|336477592|ref|YP_004616733.1| - 4.7 7.4 16.1 3.4 7.9 0.1 4.1 3 1 0 4 4 4 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|336477592|ref|YP_004616733.1| - 5.3 6.7 12.2 15 5.3 0.0 4.0 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger HalOD2 PF18547.1 gi|336477592|ref|YP_004616733.1| - 8.7 6.3 12.7 5.1 7.1 0.4 3.6 3 1 1 4 4 4 0 Halobacterial output domain 2 CxC3 PF18804.1 gi|336477592|ref|YP_004616733.1| - 9.5 6.1 8.8 4.2 7.3 3.4 2.6 1 1 1 2 2 2 0 CxC3 like cysteine cluster associated with KDZ transposases NUDIX PF00293.28 gi|336477593|ref|YP_004616734.1| - 5.2e-22 78.3 0.0 5.7e-22 78.2 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|336477593|ref|YP_004616734.1| - 0.068 12.7 0.0 0.67 9.4 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4916) Exosortase_EpsH PF09721.10 gi|336477594|ref|YP_004616735.1| - 1.7e-12 47.4 21.0 2.2e-12 47.1 21.0 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) PS_Dcarbxylase PF02666.15 gi|336477595|ref|YP_004616736.1| - 1.7e-28 99.6 1.6 3.1e-23 82.4 0.3 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase RnfC_N PF13375.6 gi|336477595|ref|YP_004616736.1| - 0.0024 17.8 2.8 0.84 9.6 0.1 3.8 1 1 3 4 4 4 1 RnfC Barrel sandwich hybrid domain DUF3509 PF12021.8 gi|336477595|ref|YP_004616736.1| - 0.14 11.9 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3509) CDP-OH_P_transf PF01066.21 gi|336477596|ref|YP_004616737.1| - 1.4e-11 45.0 2.4 1.4e-11 45.0 2.4 3.6 3 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase DUF3397 PF11877.8 gi|336477596|ref|YP_004616737.1| - 2.1 8.6 23.8 0.098 12.9 4.9 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3397) SLATT_6 PF18169.1 gi|336477596|ref|YP_004616737.1| - 4.5 6.9 5.4 2.2 7.9 2.8 1.8 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 6 ThiF PF00899.21 gi|336477597|ref|YP_004616738.1| - 4.7e-63 212.8 0.0 5.6e-63 212.6 0.0 1.0 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|336477597|ref|YP_004616738.1| - 0.0048 17.0 0.6 0.32 11.1 0.0 2.6 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|336477597|ref|YP_004616738.1| - 0.021 14.2 0.3 0.64 9.4 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YojJ PF10372.9 gi|336477597|ref|YP_004616738.1| - 0.027 14.6 0.0 0.054 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial membrane-spanning protein N-terminus Sacchrp_dh_NADP PF03435.18 gi|336477597|ref|YP_004616738.1| - 0.15 12.3 0.7 0.66 10.2 0.7 1.9 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DHNA PF04038.12 gi|336477598|ref|YP_004616739.1| - 2.9e-44 150.0 0.0 3.2e-44 149.8 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Aminotran_1_2 PF00155.21 gi|336477599|ref|YP_004616740.1| - 9.7e-60 202.6 0.0 1.1e-59 202.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|336477599|ref|YP_004616740.1| - 1.6e-08 34.3 0.0 2.3e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.13 gi|336477599|ref|YP_004616740.1| - 0.00012 21.1 0.0 0.00027 19.9 0.0 1.5 2 0 0 2 2 2 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|336477599|ref|YP_004616740.1| - 0.0012 17.4 0.0 0.0044 15.6 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|336477599|ref|YP_004616740.1| - 0.0031 16.5 0.0 0.0081 15.2 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_3 PF00202.21 gi|336477600|ref|YP_004616741.1| - 8.7e-124 413.3 0.0 1.1e-123 413.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 gi|336477600|ref|YP_004616741.1| - 0.0006 18.9 0.0 0.001 18.1 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|336477600|ref|YP_004616741.1| - 0.001 18.4 0.0 0.0039 16.5 0.0 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|336477600|ref|YP_004616741.1| - 0.047 12.8 0.0 0.081 12.1 0.0 1.5 1 1 0 1 1 1 0 Aminotransferase class I and II Bactofilin PF04519.13 gi|336477601|ref|YP_004616742.1| - 2.2e-11 43.9 15.1 1.9e-06 28.1 2.9 3.9 2 2 2 4 4 4 4 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|336477601|ref|YP_004616742.1| - 1.9e-05 24.2 17.1 0.46 10.3 0.0 6.5 4 1 2 6 6 6 5 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.8 gi|336477601|ref|YP_004616742.1| - 0.033 13.8 2.2 0.53 9.9 0.1 3.1 2 2 0 3 3 3 0 Protein of unknown function (DUF3494) TGT_C2 PF14810.6 gi|336477602|ref|YP_004616743.1| - 1.9e-27 95.2 0.1 4.4e-27 94.0 0.1 1.6 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|336477602|ref|YP_004616743.1| - 9.9e-15 54.3 0.6 5.9e-14 51.8 0.6 1.9 2 0 0 2 2 2 1 PUA domain UPF0113 PF03657.13 gi|336477602|ref|YP_004616743.1| - 0.0085 16.3 0.0 0.013 15.7 0.0 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain RtcB PF01139.17 gi|336477603|ref|YP_004616744.1| - 1.2e-170 568.1 0.1 1.5e-170 567.9 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.16 gi|336477604|ref|YP_004616745.1| - 3.1e-42 144.1 0.3 3.5e-42 143.9 0.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Condensin2nSMC PF12422.8 gi|336477604|ref|YP_004616745.1| - 0.024 14.8 0.0 0.037 14.2 0.0 1.4 1 0 0 1 1 1 0 Condensin II non structural maintenance of chromosomes subunit CDP-OH_P_transf PF01066.21 gi|336477605|ref|YP_004616746.1| - 1.7e-10 41.5 0.5 1.7e-10 41.5 0.5 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF2892 PF11127.8 gi|336477605|ref|YP_004616746.1| - 0.02 14.9 16.4 0.045 13.8 0.9 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF2892) Aldolase_II PF00596.21 gi|336477606|ref|YP_004616747.1| - 3.7e-34 118.3 0.1 4.1e-34 118.1 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain PAS_3 PF08447.12 gi|336477607|ref|YP_004616748.1| - 1.5e-59 198.2 3.3 1.2e-25 89.6 0.2 4.6 4 0 0 4 4 4 3 PAS fold HisKA_2 PF07568.12 gi|336477607|ref|YP_004616748.1| - 4.5e-30 103.6 2.3 4.5e-30 103.6 2.3 2.4 2 0 0 2 2 2 1 Histidine kinase PAS PF00989.25 gi|336477607|ref|YP_004616748.1| - 4.8e-28 97.4 0.0 1.6e-07 31.3 0.0 5.7 5 0 0 5 5 5 5 PAS fold PAS_4 PF08448.10 gi|336477607|ref|YP_004616748.1| - 2.1e-23 82.7 0.0 6e-07 29.7 0.0 5.5 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.7 gi|336477607|ref|YP_004616748.1| - 6.9e-21 73.8 0.0 0.00034 20.6 0.0 6.6 6 0 0 6 6 6 4 PAS domain PAS_9 PF13426.7 gi|336477607|ref|YP_004616748.1| - 8.2e-21 74.2 0.0 0.0004 20.6 0.0 6.5 6 1 0 6 6 6 4 PAS domain GAF_2 PF13185.6 gi|336477607|ref|YP_004616748.1| - 3.1e-15 56.7 0.0 3.9e-06 27.2 0.0 3.3 3 0 0 3 3 3 2 GAF domain HWE_HK PF07536.14 gi|336477607|ref|YP_004616748.1| - 8.8e-09 36.0 0.6 2.1e-07 31.6 0.1 2.6 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c PF02518.26 gi|336477607|ref|YP_004616748.1| - 4.4e-08 33.6 0.1 1.6e-07 31.8 0.1 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|336477607|ref|YP_004616748.1| - 9.1e-05 22.4 0.0 0.00024 21.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.6 gi|336477607|ref|YP_004616748.1| - 0.00023 21.3 0.0 0.63 10.2 0.0 3.0 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.6 gi|336477607|ref|YP_004616748.1| - 0.0015 18.9 0.0 2.5 8.4 0.0 2.9 3 0 0 3 3 3 2 GAF domain dCache_1 PF02743.18 gi|336477607|ref|YP_004616748.1| - 0.008 16.0 0.1 1.7 8.3 0.0 3.6 4 0 0 4 4 4 1 Cache domain PAS_10 PF13596.6 gi|336477607|ref|YP_004616748.1| - 0.011 16.3 0.4 0.33 11.6 0.0 3.7 2 1 1 3 3 3 0 PAS domain OPA3 PF07047.12 gi|336477607|ref|YP_004616748.1| - 0.11 12.2 0.1 7.6 6.3 0.0 2.8 3 0 0 3 3 3 0 Optic atrophy 3 protein (OPA3) SPOB_a PF14689.6 gi|336477607|ref|YP_004616748.1| - 4.2 7.1 6.1 3.1 7.6 1.3 2.7 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Catalase PF00199.19 gi|336477608|ref|YP_004616749.1| - 2.8e-201 668.6 0.2 3.3e-201 668.3 0.2 1.0 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.12 gi|336477608|ref|YP_004616749.1| - 1.2e-22 79.8 0.0 3.1e-22 78.5 0.0 1.7 1 0 0 1 1 1 1 Catalase-related immune-responsive PLDc_N PF13396.6 gi|336477609|ref|YP_004616750.1| - 7.5e-13 48.2 2.4 7.5e-13 48.2 2.4 2.1 2 0 0 2 2 2 1 Phospholipase_D-nuclease N-terminal YajC PF02699.15 gi|336477609|ref|YP_004616750.1| - 0.032 14.1 0.2 0.032 14.1 0.2 2.1 2 0 0 2 2 2 0 Preprotein translocase subunit DUF2254 PF10011.9 gi|336477609|ref|YP_004616750.1| - 0.071 11.9 1.0 0.085 11.7 1.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Lig_chan PF00060.26 gi|336477609|ref|YP_004616750.1| - 0.47 10.3 0.1 0.47 10.3 0.1 1.7 2 0 0 2 2 2 0 Ligand-gated ion channel DUF2207 PF09972.9 gi|336477609|ref|YP_004616750.1| - 0.5 9.1 2.4 0.58 8.9 2.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) LapA_dom PF06305.11 gi|336477609|ref|YP_004616750.1| - 1.9 8.4 4.2 3.9 7.4 0.0 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Lysis_col PF02402.16 gi|336477609|ref|YP_004616750.1| - 5.9 6.7 6.6 0.96 9.2 1.3 2.1 2 0 0 2 2 2 0 Lysis protein Sigma_reg_N PF13800.6 gi|336477610|ref|YP_004616751.1| - 0.0031 17.7 0.1 0.0056 16.9 0.1 1.4 1 0 0 1 1 1 1 Sigma factor regulator N-terminal DUF2207 PF09972.9 gi|336477610|ref|YP_004616751.1| - 0.12 11.1 2.6 1.3 7.7 0.2 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) EB_dh PF09459.10 gi|336477611|ref|YP_004616752.1| - 1.9e-51 175.5 0.0 2.9e-51 174.8 0.0 1.2 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase PGF-CTERM PF18204.1 gi|336477611|ref|YP_004616752.1| - 7.1e-06 25.8 1.9 7.1e-06 25.8 1.9 2.0 2 0 0 2 2 2 1 PGF-CTERM motif Trypan_PARP PF05887.11 gi|336477611|ref|YP_004616752.1| - 0.0056 16.7 2.6 0.0056 16.7 2.6 1.6 2 0 0 2 2 2 1 Procyclic acidic repetitive protein (PARP) DUF4162 PF13732.6 gi|336477612|ref|YP_004616753.1| - 0.044 14.5 0.1 0.056 14.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) Daxx PF03344.15 gi|336477612|ref|YP_004616753.1| - 0.11 12.6 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 Daxx N-terminal Rassf1C-interacting domain Glt_symporter PF03616.14 gi|336477613|ref|YP_004616754.1| - 4.7e-10 38.7 15.2 2e-08 33.3 15.2 2.5 1 1 0 1 1 1 1 Sodium/glutamate symporter Radical_SAM PF04055.21 gi|336477614|ref|YP_004616755.1| - 2.5e-15 57.2 0.1 7e-15 55.8 0.1 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|336477614|ref|YP_004616755.1| - 1.7e-10 41.3 0.0 3.8e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|336477614|ref|YP_004616755.1| - 6.9e-08 32.6 0.0 1.7e-07 31.4 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain NRDD PF13597.6 gi|336477615|ref|YP_004616756.1| - 1.6e-153 512.5 0.0 1.9e-153 512.2 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.16 gi|336477615|ref|YP_004616756.1| - 0.072 13.7 0.0 0.16 12.6 0.0 1.6 1 0 0 1 1 1 0 ATP cone domain Glutaredoxin PF00462.24 gi|336477616|ref|YP_004616757.1| - 5e-06 26.6 0.1 6.3e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.14 gi|336477616|ref|YP_004616757.1| - 0.00077 19.8 0.0 0.00087 19.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 gi|336477616|ref|YP_004616757.1| - 0.1 13.0 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like domain GST_N_3 PF13417.6 gi|336477616|ref|YP_004616757.1| - 0.11 12.9 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Rad51 PF08423.11 gi|336477617|ref|YP_004616758.1| - 1.8e-34 119.1 0.1 2.4e-34 118.8 0.1 1.1 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|336477617|ref|YP_004616758.1| - 1.8e-15 56.9 1.0 1.1e-13 51.1 1.0 2.1 1 1 0 1 1 1 1 KaiC RecA PF00154.21 gi|336477617|ref|YP_004616758.1| - 2.9e-12 46.6 0.2 3.7e-12 46.3 0.2 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|336477617|ref|YP_004616758.1| - 1e-06 28.5 0.0 1.9e-06 27.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|336477617|ref|YP_004616758.1| - 2.2e-06 27.6 0.0 3.5e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zot PF05707.12 gi|336477617|ref|YP_004616758.1| - 5.6e-05 22.9 0.0 6.8e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) PhoH PF02562.16 gi|336477617|ref|YP_004616758.1| - 0.0015 18.0 0.1 0.0028 17.1 0.1 1.5 1 0 0 1 1 1 1 PhoH-like protein CobU PF02283.16 gi|336477617|ref|YP_004616758.1| - 0.0048 16.5 0.0 0.011 15.2 0.0 1.5 1 1 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase IstB_IS21 PF01695.17 gi|336477617|ref|YP_004616758.1| - 0.0066 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|336477617|ref|YP_004616758.1| - 0.014 15.3 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|336477617|ref|YP_004616758.1| - 0.017 14.7 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DnaB_C PF03796.15 gi|336477617|ref|YP_004616758.1| - 0.019 14.3 0.0 0.099 12.0 0.0 1.8 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain AAA_30 PF13604.6 gi|336477617|ref|YP_004616758.1| - 0.024 14.3 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|336477617|ref|YP_004616758.1| - 0.028 13.7 0.0 0.032 13.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|336477617|ref|YP_004616758.1| - 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|336477617|ref|YP_004616758.1| - 0.032 13.4 0.0 0.046 12.9 0.0 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_18 PF13238.6 gi|336477617|ref|YP_004616758.1| - 0.054 14.0 0.0 0.074 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|336477617|ref|YP_004616758.1| - 0.063 13.7 0.0 0.12 12.8 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|336477617|ref|YP_004616758.1| - 0.072 13.2 0.0 0.094 12.8 0.0 1.2 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain KTI12 PF08433.10 gi|336477617|ref|YP_004616758.1| - 0.13 11.7 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TrwB_AAD_bind PF10412.9 gi|336477617|ref|YP_004616758.1| - 0.16 10.8 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain GCD14 PF08704.10 gi|336477618|ref|YP_004616759.1| - 2.9e-17 63.2 0.1 1.1e-15 58.0 0.0 2.1 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|336477618|ref|YP_004616759.1| - 3e-11 43.4 0.1 4e-11 42.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336477618|ref|YP_004616759.1| - 3.3e-09 37.3 0.1 6.6e-09 36.4 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|336477618|ref|YP_004616759.1| - 8.2e-09 35.5 0.1 1.2e-08 34.9 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|336477618|ref|YP_004616759.1| - 2.4e-07 30.4 0.6 3.3e-07 30.0 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|336477618|ref|YP_004616759.1| - 5.1e-07 29.7 0.2 9.1e-07 28.9 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336477618|ref|YP_004616759.1| - 6.3e-07 30.0 0.0 1.1e-06 29.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|336477618|ref|YP_004616759.1| - 3.6e-06 26.3 0.0 5.6e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_30 PF05430.11 gi|336477618|ref|YP_004616759.1| - 0.0002 21.2 0.0 0.00045 20.1 0.0 1.6 1 1 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|336477618|ref|YP_004616759.1| - 0.0003 20.4 0.3 0.0005 19.6 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|336477618|ref|YP_004616759.1| - 0.00042 20.2 0.0 0.0016 18.3 0.0 1.7 1 1 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336477618|ref|YP_004616759.1| - 0.0019 17.6 0.2 0.0028 17.0 0.2 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Cons_hypoth95 PF03602.15 gi|336477618|ref|YP_004616759.1| - 0.0026 17.4 0.1 0.069 12.8 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical protein 95 TehB PF03848.14 gi|336477618|ref|YP_004616759.1| - 0.0044 16.5 0.4 0.0064 15.9 0.4 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB N6_N4_Mtase PF01555.18 gi|336477618|ref|YP_004616759.1| - 0.0063 16.3 0.0 0.0082 15.9 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_12 PF08242.12 gi|336477618|ref|YP_004616759.1| - 0.02 15.6 0.0 0.037 14.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|336477618|ref|YP_004616759.1| - 0.025 14.0 0.1 0.11 11.9 0.1 1.8 1 1 1 2 2 2 0 Putative methyltransferase HD PF01966.22 gi|336477619|ref|YP_004616760.1| - 2.9e-14 53.3 0.3 1.2e-13 51.4 0.3 2.1 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 gi|336477619|ref|YP_004616760.1| - 7.9e-05 22.2 0.2 0.00039 19.9 0.0 2.1 2 0 0 2 2 2 1 HDOD domain IF-2B PF01008.17 gi|336477620|ref|YP_004616761.1| - 1.4e-84 283.7 0.0 1.6e-84 283.5 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Sec61_beta PF03911.16 gi|336477621|ref|YP_004616762.1| - 1.4e-14 53.9 0.0 1.7e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Sec61beta family DUF2200 PF09966.9 gi|336477621|ref|YP_004616762.1| - 0.096 12.8 0.0 0.1 12.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2200) OpuAC PF04069.12 gi|336477622|ref|YP_004616763.1| - 1.1e-64 218.5 0.2 1.3e-64 218.2 0.2 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system OpuAC PF04069.12 gi|336477623|ref|YP_004616764.1| - 6e-66 222.6 2.4 7.1e-66 222.4 2.4 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system D5_N PF08706.11 gi|336477623|ref|YP_004616764.1| - 0.024 14.9 0.5 0.058 13.7 0.0 1.8 2 1 0 2 2 2 0 D5 N terminal like SBP_bac_5 PF00496.22 gi|336477623|ref|YP_004616764.1| - 0.04 12.9 0.1 0.062 12.3 0.1 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|336477624|ref|YP_004616765.1| - 3.9e-24 85.4 12.1 3.9e-24 85.4 12.1 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|336477625|ref|YP_004616766.1| - 2.1e-34 119.0 0.0 1.4e-33 116.4 0.0 2.1 2 0 0 2 2 2 1 ABC transporter CBS PF00571.28 gi|336477625|ref|YP_004616766.1| - 1.4e-15 57.4 3.4 6.2e-07 29.8 0.1 2.9 2 0 0 2 2 2 2 CBS domain ABC_ATPase PF09818.9 gi|336477625|ref|YP_004616766.1| - 1.1e-06 27.8 2.0 0.05 12.4 0.0 3.4 3 1 0 3 3 3 2 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|336477625|ref|YP_004616766.1| - 2.6e-06 27.7 0.0 1.1e-05 25.7 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_21 PF13304.6 gi|336477625|ref|YP_004616766.1| - 2.2e-05 24.4 0.9 0.056 13.2 0.1 2.6 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|336477625|ref|YP_004616766.1| - 0.00018 21.2 0.0 0.00033 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|336477625|ref|YP_004616766.1| - 0.00028 20.8 0.0 0.00063 19.7 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|336477625|ref|YP_004616766.1| - 0.00055 20.5 1.9 0.00093 19.7 0.2 2.1 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|336477625|ref|YP_004616766.1| - 0.00063 20.2 0.2 0.0015 18.9 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|336477625|ref|YP_004616766.1| - 0.0084 16.3 0.0 0.013 15.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|336477625|ref|YP_004616766.1| - 0.01 15.6 0.0 0.079 12.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|336477625|ref|YP_004616766.1| - 0.01 15.7 1.6 0.6 10.0 0.0 3.2 4 0 0 4 4 4 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|336477625|ref|YP_004616766.1| - 0.013 14.7 0.0 0.028 13.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 gi|336477625|ref|YP_004616766.1| - 0.018 14.1 0.1 0.11 11.5 0.0 2.1 1 1 0 2 2 2 0 Type II/IV secretion system protein SMC_N PF02463.19 gi|336477625|ref|YP_004616766.1| - 0.041 13.3 2.0 0.52 9.7 2.0 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|336477625|ref|YP_004616766.1| - 0.045 14.0 1.2 0.46 10.8 1.1 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|336477625|ref|YP_004616766.1| - 0.049 14.2 0.0 0.15 12.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|336477625|ref|YP_004616766.1| - 0.052 13.2 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Adeno_IVa2 PF02456.15 gi|336477625|ref|YP_004616766.1| - 0.075 11.8 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein HMA PF00403.26 gi|336477626|ref|YP_004616767.1| - 1.4e-19 70.2 0.2 1.6e-19 70.1 0.2 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Thioredoxin_7 PF13899.6 gi|336477626|ref|YP_004616767.1| - 0.014 15.5 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like Tox-PL-2 PF15643.6 gi|336477626|ref|YP_004616767.1| - 0.02 15.0 0.0 0.021 15.0 0.0 1.1 1 0 0 1 1 1 0 Papain fold toxin 2 Thioredoxin_3 PF13192.6 gi|336477626|ref|YP_004616767.1| - 0.037 14.1 0.3 0.049 13.7 0.3 1.4 1 1 0 1 1 1 0 Thioredoxin domain Pro_Al_protease PF02983.14 gi|336477626|ref|YP_004616767.1| - 0.096 12.8 0.0 0.1 12.7 0.0 1.1 1 0 0 1 1 1 0 Alpha-lytic protease prodomain TusA PF01206.17 gi|336477626|ref|YP_004616767.1| - 0.13 12.1 0.1 0.16 11.8 0.1 1.3 1 1 0 1 1 1 0 Sulfurtransferase TusA SRP19 PF01922.17 gi|336477627|ref|YP_004616768.1| - 2.1e-21 76.6 0.2 2.8e-21 76.3 0.2 1.1 1 0 0 1 1 1 1 SRP19 protein zf_C2H2_13 PF18508.1 gi|336477628|ref|YP_004616769.1| - 0.018 14.7 0.1 0.033 13.8 0.1 1.4 1 0 0 1 1 1 0 Zinc finger domain A2L_zn_ribbon PF08792.10 gi|336477628|ref|YP_004616769.1| - 0.12 12.2 1.9 0.2 11.4 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain RPN5_C PF18098.1 gi|336477629|ref|YP_004616770.1| - 0.00059 19.9 0.9 0.33 11.1 0.0 3.0 3 0 0 3 3 3 2 26S proteasome regulatory subunit RPN5 C-terminal domain ROS_MUCR PF05443.11 gi|336477629|ref|YP_004616770.1| - 0.059 13.4 0.3 14 5.8 0.0 2.5 2 0 0 2 2 2 0 ROS/MUCR transcriptional regulator protein MtrE PF04206.12 gi|336477630|ref|YP_004616771.1| - 1.1e-134 447.9 13.3 1.3e-134 447.7 13.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E DUF4064 PF13273.6 gi|336477630|ref|YP_004616771.1| - 0.5 10.7 12.7 3.9 7.8 0.1 3.8 3 1 1 4 4 4 0 Protein of unknown function (DUF4064) Phage_holin_3_5 PF16085.5 gi|336477630|ref|YP_004616771.1| - 0.59 10.3 7.3 0.16 12.1 1.5 2.6 2 0 0 2 2 2 0 Bacteriophage holin Hol, superfamily III DUF2070 PF09843.9 gi|336477630|ref|YP_004616771.1| - 3.9 5.6 13.9 3.8 5.7 5.7 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) MtrD PF04207.12 gi|336477631|ref|YP_004616772.1| - 2.6e-100 334.6 27.7 3.2e-100 334.3 27.7 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.13 gi|336477632|ref|YP_004616773.1| - 2.8e-107 357.8 31.9 3.2e-107 357.6 31.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrB PF05440.12 gi|336477633|ref|YP_004616774.1| - 2.7e-36 123.8 0.0 3.2e-36 123.6 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrA PF04208.14 gi|336477634|ref|YP_004616775.1| - 3.5e-85 284.0 0.3 4.9e-85 283.5 0.3 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|336477634|ref|YP_004616775.1| - 0.02 14.3 1.5 0.032 13.6 0.3 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.10 gi|336477635|ref|YP_004616776.1| - 8.2e-28 95.6 1.4 9.3e-28 95.4 1.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) PhoR PF11808.8 gi|336477635|ref|YP_004616776.1| - 0.16 12.4 0.9 0.19 12.2 0.9 1.2 1 0 0 1 1 1 0 Phosphate regulon sensor protein PhoR MtrG PF04210.13 gi|336477636|ref|YP_004616777.1| - 5.9e-34 115.7 1.8 6.7e-34 115.5 1.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF2536 PF10750.9 gi|336477636|ref|YP_004616777.1| - 0.0045 16.9 0.0 0.0067 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2536) MtrH PF02007.18 gi|336477637|ref|YP_004616778.1| - 2.5e-143 476.7 2.9 2.8e-143 476.5 2.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit BPL_N PF09825.9 gi|336477639|ref|YP_004616780.1| - 0.0049 16.0 0.0 0.93 8.5 0.0 2.1 2 0 0 2 2 2 2 Biotin-protein ligase, N terminal DUF1894 PF08979.11 gi|336477640|ref|YP_004616781.1| - 9.4e-34 115.7 0.2 1.1e-33 115.5 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) AIRS_C PF02769.22 gi|336477641|ref|YP_004616782.1| - 2.3e-19 70.0 0.0 4.8e-19 69.0 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|336477641|ref|YP_004616782.1| - 4.5e-15 56.1 0.8 4.5e-15 56.1 0.8 1.6 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain RRM_1 PF00076.22 gi|336477641|ref|YP_004616782.1| - 0.0014 18.4 0.0 0.0037 17.1 0.0 1.7 2 0 0 2 2 2 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Acetyltransf_7 PF13508.7 gi|336477641|ref|YP_004616782.1| - 0.07 13.6 0.0 0.22 12.0 0.0 1.9 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AA_kinase PF00696.28 gi|336477642|ref|YP_004616783.1| - 1.7e-50 171.9 0.6 3.5e-50 170.8 0.6 1.5 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|336477642|ref|YP_004616783.1| - 1.6e-22 79.1 5.7 4.3e-11 42.4 0.1 2.8 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|336477642|ref|YP_004616783.1| - 7.4e-19 67.2 6.5 1.2e-08 34.6 0.3 3.5 3 0 0 3 3 3 2 ACT domain DUF2007 PF09413.10 gi|336477642|ref|YP_004616783.1| - 0.0031 17.6 0.2 3.8 7.7 0.1 3.7 3 0 0 3 3 3 2 Putative prokaryotic signal transducing protein ChitinaseA_N PF08329.10 gi|336477643|ref|YP_004616784.1| - 0.0019 17.8 0.2 0.0038 16.9 0.2 1.5 1 0 0 1 1 1 1 Chitinase A, N-terminal domain ETRAMP PF09716.10 gi|336477643|ref|YP_004616784.1| - 0.24 11.5 2.5 1.5 8.9 0.3 2.7 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) PhosphMutase PF10143.9 gi|336477644|ref|YP_004616785.1| - 9.1e-57 191.6 0.0 1.3e-56 191.1 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|336477644|ref|YP_004616785.1| - 1.4e-44 152.3 0.0 1.6e-44 152.1 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|336477644|ref|YP_004616785.1| - 0.0048 16.5 0.0 0.019 14.6 0.0 1.8 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.20 gi|336477644|ref|YP_004616785.1| - 0.049 12.6 0.2 0.049 12.6 0.2 1.6 2 0 0 2 2 2 0 Alkaline phosphatase PglZ PF08665.12 gi|336477644|ref|YP_004616785.1| - 0.14 12.3 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 PglZ domain HSP20 PF00011.21 gi|336477645|ref|YP_004616786.1| - 2.5e-22 78.9 2.6 3.1e-22 78.6 2.6 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|336477645|ref|YP_004616786.1| - 1.2e-13 50.4 0.0 1.8e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|336477645|ref|YP_004616786.1| - 4.4e-05 24.4 0.1 7.1e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 CS domain FKBP26_C PF18046.1 gi|336477645|ref|YP_004616786.1| - 0.013 15.5 1.2 5.6 7.1 0.0 2.3 2 0 0 2 2 2 0 FKBP26_C-terminal PIH1_CS PF18201.1 gi|336477645|ref|YP_004616786.1| - 0.037 14.4 0.0 0.061 13.7 0.0 1.3 1 0 0 1 1 1 0 PIH1 CS-like domain GvpH PF05455.11 gi|336477645|ref|YP_004616786.1| - 0.043 13.9 0.3 0.062 13.4 0.3 1.3 1 0 0 1 1 1 0 GvpH F420_ligase PF01996.16 gi|336477646|ref|YP_004616787.1| - 3.7e-64 216.4 0.3 4.7e-64 216.1 0.3 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.23 gi|336477647|ref|YP_004616788.1| - 1.2e-27 95.7 3.7 1.7e-27 95.2 3.7 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|336477647|ref|YP_004616788.1| - 5.7e-20 71.5 1.2 7.6e-20 71.1 1.2 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Methyltr_RsmB-F PF01189.17 gi|336477647|ref|YP_004616788.1| - 0.0019 17.8 0.1 0.0026 17.4 0.1 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F APOBEC_N PF08210.11 gi|336477647|ref|YP_004616788.1| - 0.0024 17.8 0.9 0.0037 17.2 0.9 1.3 1 0 0 1 1 1 1 APOBEC-like N-terminal domain Bd3614-deam PF14439.6 gi|336477647|ref|YP_004616788.1| - 0.0025 17.9 1.4 0.0043 17.1 1.4 1.6 1 1 0 1 1 1 1 Bd3614-like deaminase OTT_1508_deam PF14441.6 gi|336477647|ref|YP_004616788.1| - 0.02 14.9 0.1 0.034 14.1 0.1 1.4 1 0 0 1 1 1 0 OTT_1508-like deaminase SNAD4 PF18750.1 gi|336477647|ref|YP_004616788.1| - 0.064 13.4 0.5 0.096 12.8 0.5 1.3 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 NAD1 PF18778.1 gi|336477647|ref|YP_004616788.1| - 0.11 12.5 0.7 0.16 12.1 0.7 1.2 1 0 0 1 1 1 0 Novel AID APOBEC clade 1 APOBEC2 PF18772.1 gi|336477647|ref|YP_004616788.1| - 0.16 12.0 0.4 0.22 11.6 0.4 1.2 1 0 0 1 1 1 0 APOBEC2 zf-C3HC4 PF00097.25 gi|336477647|ref|YP_004616788.1| - 0.45 10.4 5.6 0.92 9.4 4.5 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) SecD_SecF PF02355.16 gi|336477648|ref|YP_004616789.1| - 3.6e-33 114.5 17.0 3.6e-33 114.5 17.0 1.6 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|336477648|ref|YP_004616789.1| - 1.8e-05 24.1 0.1 3.8e-05 23.0 0.1 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|336477648|ref|YP_004616789.1| - 0.00016 19.9 14.9 0.00026 19.2 14.9 1.3 1 0 0 1 1 1 1 Patched family SecD_SecF PF02355.16 gi|336477649|ref|YP_004616790.1| - 1.3e-15 57.3 9.4 2.3e-15 56.5 9.4 1.3 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|336477649|ref|YP_004616790.1| - 0.0032 16.4 12.7 0.0059 15.6 12.7 1.3 1 0 0 1 1 1 1 MMPL family DUF4367 PF14285.6 gi|336477649|ref|YP_004616790.1| - 0.011 16.2 0.3 0.02 15.3 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4367) Patched PF02460.18 gi|336477649|ref|YP_004616790.1| - 3 5.8 11.1 4.4 5.3 11.1 1.1 1 0 0 1 1 1 0 Patched family UPF0154 PF03672.13 gi|336477649|ref|YP_004616790.1| - 10 6.3 6.8 2.2 8.4 0.1 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0154) DNA_pol3_delta2 PF13177.6 gi|336477650|ref|YP_004616791.1| - 5.1e-16 58.9 0.0 1.1e-15 57.7 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|336477650|ref|YP_004616791.1| - 6.4e-14 52.1 0.6 6.4e-14 52.1 0.6 1.9 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|336477650|ref|YP_004616791.1| - 1.5e-11 44.8 0.0 8.1e-11 42.5 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|336477650|ref|YP_004616791.1| - 2.8e-06 27.8 0.0 2.3e-05 24.9 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|336477650|ref|YP_004616791.1| - 4.1e-05 23.6 0.0 7.8e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain TIP49 PF06068.13 gi|336477650|ref|YP_004616791.1| - 0.00015 21.1 0.0 0.0065 15.7 0.0 2.3 1 1 1 2 2 2 1 TIP49 P-loop domain AAA_22 PF13401.6 gi|336477650|ref|YP_004616791.1| - 0.00076 19.8 0.0 0.0031 17.8 0.0 2.0 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|336477650|ref|YP_004616791.1| - 0.00093 19.0 0.2 0.16 11.7 0.0 3.1 2 1 1 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|336477650|ref|YP_004616791.1| - 0.0016 18.2 0.6 0.013 15.2 0.2 2.3 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|336477650|ref|YP_004616791.1| - 0.004 17.5 0.1 0.026 14.9 0.0 2.4 3 0 0 3 3 3 1 RNA helicase Sigma54_activat PF00158.26 gi|336477650|ref|YP_004616791.1| - 0.0056 16.4 0.0 0.5 10.1 0.0 3.1 2 1 1 3 3 3 1 Sigma-54 interaction domain Torsin PF06309.11 gi|336477650|ref|YP_004616791.1| - 0.027 14.6 0.1 0.18 11.9 0.0 2.1 2 0 0 2 2 2 0 Torsin AAA_7 PF12775.7 gi|336477650|ref|YP_004616791.1| - 0.031 13.8 0.0 0.073 12.6 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|336477650|ref|YP_004616791.1| - 0.032 14.0 0.0 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF815 PF05673.13 gi|336477650|ref|YP_004616791.1| - 0.047 12.9 0.0 0.78 8.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|336477650|ref|YP_004616791.1| - 0.059 12.6 0.0 0.09 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 gi|336477650|ref|YP_004616791.1| - 0.077 13.0 0.0 0.44 10.5 0.0 2.1 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit MutS_I PF01624.20 gi|336477650|ref|YP_004616791.1| - 0.14 12.4 0.1 1.8 8.8 0.1 2.6 3 1 0 3 3 3 0 MutS domain I Radical_SAM_C PF16199.5 gi|336477651|ref|YP_004616792.1| - 1.4e-25 89.1 0.0 3.2e-25 88.0 0.0 1.6 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|336477651|ref|YP_004616792.1| - 1.2e-20 74.6 0.0 3.4e-20 73.1 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|336477651|ref|YP_004616792.1| - 1.8e-08 34.7 0.1 3.6e-08 33.6 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336477651|ref|YP_004616792.1| - 5.5e-06 26.3 0.0 1.2e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336477651|ref|YP_004616792.1| - 0.0017 18.7 0.1 0.0041 17.5 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain TrmB PF01978.19 gi|336477652|ref|YP_004616793.1| - 1e-05 25.3 0.1 2.4e-05 24.1 0.1 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB AAA_31 PF13614.6 gi|336477653|ref|YP_004616794.1| - 2.5e-19 69.9 0.2 4.2e-19 69.1 0.2 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|336477653|ref|YP_004616794.1| - 1.5e-14 54.1 2.9 1.9e-13 50.5 2.9 2.4 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|336477653|ref|YP_004616794.1| - 1.4e-09 38.1 0.0 1.6e-09 37.9 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|336477653|ref|YP_004616794.1| - 3.3e-07 29.9 0.2 4e-06 26.3 0.2 2.1 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|336477653|ref|YP_004616794.1| - 0.00036 20.1 0.0 0.0018 17.8 0.0 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|336477653|ref|YP_004616794.1| - 0.00062 19.1 0.2 0.042 13.2 0.1 2.3 2 0 0 2 2 2 1 VirC1 protein CLP1_P PF16575.5 gi|336477653|ref|YP_004616794.1| - 0.16 11.8 0.0 0.38 10.5 0.0 1.6 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|336477653|ref|YP_004616794.1| - 0.18 11.4 0.2 1.5 8.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.15 gi|336477653|ref|YP_004616794.1| - 0.79 8.9 2.9 5.7 6.0 2.3 2.3 1 1 0 1 1 1 0 Anion-transporting ATPase DUF2754 PF10953.8 gi|336477654|ref|YP_004616795.1| - 0.089 13.0 2.3 1.2 9.4 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2754) DUF1699 PF08004.11 gi|336477655|ref|YP_004616796.1| - 2.4e-62 208.4 0.5 2.7e-62 208.2 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) UPF0047 PF01894.17 gi|336477656|ref|YP_004616797.1| - 1.6e-34 118.5 0.0 1.9e-34 118.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Hce2 PF14856.6 gi|336477656|ref|YP_004616797.1| - 0.22 11.8 0.1 1.6 9.1 0.1 2.0 1 1 1 2 2 2 0 Pathogen effector; putative necrosis-inducing factor AC_N PF16214.5 gi|336477657|ref|YP_004616798.1| - 0.57 9.3 1.7 0.63 9.1 1.7 1.0 1 0 0 1 1 1 0 Adenylyl cyclase N-terminal extracellular and transmembrane region SafA PF17073.5 gi|336477657|ref|YP_004616798.1| - 0.67 10.0 6.6 0.079 12.9 2.1 1.6 1 1 1 2 2 2 0 Two-component-system connector protein Hjc PF01870.18 gi|336477658|ref|YP_004616799.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.6 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) DHHA1 PF02272.19 gi|336477659|ref|YP_004616800.1| - 9.2e-18 65.0 0.1 2.2e-17 63.8 0.1 1.7 1 0 0 1 1 1 1 DHHA1 domain NRD1_2 PF01995.16 gi|336477660|ref|YP_004616801.1| - 2e-97 325.2 0.2 2.2e-97 325.0 0.2 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 GPI PF06560.11 gi|336477661|ref|YP_004616802.1| - 6.6e-48 162.4 2.5 8.7e-48 162.0 2.5 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_1 PF00190.22 gi|336477661|ref|YP_004616802.1| - 0.0027 17.3 0.0 0.004 16.8 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_2 PF07883.11 gi|336477661|ref|YP_004616802.1| - 0.0066 16.1 0.3 0.023 14.4 0.3 1.9 1 1 0 1 1 1 1 Cupin domain Rho_RNA_bind PF07497.12 gi|336477661|ref|YP_004616802.1| - 0.01 15.7 0.0 0.033 14.0 0.0 1.8 1 1 1 2 2 2 0 Rho termination factor, RNA-binding domain UvrC_HhH_N PF08459.11 gi|336477662|ref|YP_004616803.1| - 1.5e-49 167.9 0.0 2.8e-49 167.0 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|336477662|ref|YP_004616803.1| - 3e-12 46.9 0.4 1.3e-11 44.9 0.1 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain GIY-YIG PF01541.24 gi|336477662|ref|YP_004616803.1| - 4.2e-11 43.0 0.1 1.6e-10 41.1 0.0 2.1 2 0 0 2 2 2 1 GIY-YIG catalytic domain HHH_2 PF12826.7 gi|336477662|ref|YP_004616803.1| - 2.5e-09 37.1 0.1 1.9e-08 34.3 0.0 2.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif UVR PF02151.19 gi|336477662|ref|YP_004616803.1| - 1e-07 31.5 0.4 2.5e-07 30.2 0.4 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif HHH PF00633.23 gi|336477662|ref|YP_004616803.1| - 1.5e-07 30.9 0.0 1.5e-05 24.6 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|336477662|ref|YP_004616803.1| - 0.00033 20.8 0.1 0.0023 18.2 0.1 2.3 1 1 0 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|336477662|ref|YP_004616803.1| - 0.086 13.2 0.2 6.4 7.2 0.0 2.7 1 1 1 2 2 2 0 Helix-hairpin-helix domain IMS_HHH PF11798.8 gi|336477662|ref|YP_004616803.1| - 0.13 12.7 0.0 12 6.5 0.0 2.6 2 0 0 2 2 2 0 IMS family HHH motif RNase_H_2 PF13482.6 gi|336477663|ref|YP_004616804.1| - 7.6e-36 123.6 0.0 1e-35 123.2 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|336477663|ref|YP_004616804.1| - 0.021 14.5 0.0 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_exo1 PF03104.19 gi|336477663|ref|YP_004616804.1| - 0.061 12.4 0.0 0.079 12.1 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase family B, exonuclease domain Acetyltransf_1 PF00583.25 gi|336477664|ref|YP_004616805.1| - 2.7e-09 37.3 0.0 3.7e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336477664|ref|YP_004616805.1| - 7.3e-07 29.5 0.3 1.3e-05 25.6 0.3 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336477664|ref|YP_004616805.1| - 0.0053 16.7 0.0 0.16 11.9 0.0 2.4 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|336477664|ref|YP_004616805.1| - 0.018 15.0 0.0 0.46 10.4 0.0 2.3 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Ldh_1_N PF00056.23 gi|336477665|ref|YP_004616806.1| - 3.9e-40 137.2 0.6 6.5e-40 136.5 0.6 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|336477665|ref|YP_004616806.1| - 8.4e-28 97.4 0.0 1.3e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|336477665|ref|YP_004616806.1| - 9.9e-05 22.0 2.2 0.0004 20.0 2.2 1.9 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_hydro_4 PF02056.16 gi|336477665|ref|YP_004616806.1| - 0.0004 20.0 0.3 0.0023 17.5 0.1 2.2 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase PRC PF05239.16 gi|336477666|ref|YP_004616807.1| - 3.8e-16 58.9 2.0 4.3e-16 58.7 2.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain Thg1 PF04446.12 gi|336477667|ref|YP_004616808.1| - 6.5e-25 87.6 0.1 1e-24 87.0 0.1 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|336477667|ref|YP_004616808.1| - 5.4e-10 39.5 0.3 7.7e-10 39.0 0.3 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain Na_H_Exchanger PF00999.21 gi|336477668|ref|YP_004616809.1| - 2.9e-55 187.6 61.5 3.6e-55 187.3 61.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|336477668|ref|YP_004616809.1| - 7e-21 74.6 0.0 1.5e-20 73.6 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_2 PF03446.15 gi|336477668|ref|YP_004616809.1| - 0.0037 17.5 0.0 0.0075 16.5 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|336477668|ref|YP_004616809.1| - 0.064 13.2 0.0 0.14 12.1 0.0 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Lipocalin_2 PF08212.12 gi|336477668|ref|YP_004616809.1| - 0.14 12.1 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Lipocalin-like domain NikR_C PF08753.11 gi|336477669|ref|YP_004616810.1| - 1.3e-34 118.1 2.4 1.9e-34 117.7 2.4 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|336477669|ref|YP_004616810.1| - 1.2e-08 34.6 0.0 2.4e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|336477669|ref|YP_004616810.1| - 0.0026 17.8 0.0 0.0094 16.1 0.0 1.8 2 0 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system Bromo_TP PF07524.13 gi|336477669|ref|YP_004616810.1| - 0.068 13.2 0.0 0.18 11.8 0.0 1.6 2 0 0 2 2 2 0 Bromodomain associated HTH_5 PF01022.20 gi|336477670|ref|YP_004616811.1| - 3.8e-13 49.1 0.1 1.1e-12 47.6 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|336477670|ref|YP_004616811.1| - 5.4e-10 39.2 0.0 1.4e-09 37.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|336477670|ref|YP_004616811.1| - 0.00081 19.3 0.3 0.0011 18.9 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF505 PF04458.12 gi|336477670|ref|YP_004616811.1| - 0.0009 17.7 0.2 0.0016 16.9 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF505) DUF2513 PF10711.9 gi|336477670|ref|YP_004616811.1| - 0.0011 19.2 0.1 0.0015 18.7 0.1 1.5 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) DUF4364 PF14277.6 gi|336477670|ref|YP_004616811.1| - 0.01 15.6 0.5 0.019 14.7 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|336477670|ref|YP_004616811.1| - 0.034 14.7 0.0 0.065 13.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|336477670|ref|YP_004616811.1| - 0.056 13.6 0.3 0.1 12.8 0.1 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|336477670|ref|YP_004616811.1| - 0.058 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain PadR PF03551.14 gi|336477670|ref|YP_004616811.1| - 0.059 13.3 0.0 0.087 12.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF3077 PF11275.8 gi|336477670|ref|YP_004616811.1| - 0.096 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3077) Radical_SAM PF04055.21 gi|336477671|ref|YP_004616812.1| - 3.6e-18 66.5 1.4 5.8e-18 65.8 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|336477671|ref|YP_004616812.1| - 3.1e-06 27.3 1.2 4.4e-06 26.8 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|336477671|ref|YP_004616812.1| - 8.4e-06 26.1 0.2 3.8e-05 24.0 0.0 2.2 2 1 0 2 2 2 1 4Fe-4S single cluster domain S-layer PF07752.11 gi|336477672|ref|YP_004616813.1| - 2.7e-196 649.3 7.4 1.3e-100 335.7 5.1 2.2 2 0 0 2 2 2 2 S-layer protein CARDB PF07705.11 gi|336477672|ref|YP_004616813.1| - 8.9e-08 32.3 0.8 8.3e-07 29.2 0.1 3.0 3 0 0 3 3 3 1 CARDB CarboxypepD_reg PF13620.6 gi|336477672|ref|YP_004616813.1| - 1.3e-06 28.5 7.1 0.058 13.7 0.1 4.4 2 1 1 3 3 3 2 Carboxypeptidase regulatory-like domain Big_3_5 PF16640.5 gi|336477672|ref|YP_004616813.1| - 7.5e-05 22.8 2.0 0.49 10.6 0.2 3.0 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 3) CarbopepD_reg_2 PF13715.6 gi|336477672|ref|YP_004616813.1| - 0.00021 21.2 2.8 2.2 8.3 0.0 4.3 3 1 1 4 4 4 1 CarboxypepD_reg-like domain PEGA PF08308.11 gi|336477672|ref|YP_004616813.1| - 0.0016 18.3 2.6 1.9 8.4 0.0 3.8 4 0 0 4 4 4 2 PEGA domain CBM60 PF16841.5 gi|336477672|ref|YP_004616813.1| - 0.002 18.5 4.7 13 6.3 0.1 5.2 5 0 0 5 5 5 1 Ca-dependent carbohydrate-binding module xylan-binding DUF4198 PF10670.9 gi|336477672|ref|YP_004616813.1| - 0.0038 17.6 1.4 0.71 10.2 0.1 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4198) ASH PF15780.5 gi|336477672|ref|YP_004616813.1| - 0.0077 16.4 0.6 13 6.0 0.1 4.5 3 1 1 4 4 4 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin tRNA-synt_1c_C PF03950.18 gi|336477672|ref|YP_004616813.1| - 0.077 12.9 0.0 5.4 6.9 0.0 3.2 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), anti-codon binding domain DUF2606 PF10794.9 gi|336477672|ref|YP_004616813.1| - 0.083 12.7 0.3 5.3 6.8 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2606) Big_7 PF17957.1 gi|336477672|ref|YP_004616813.1| - 0.31 11.8 16.4 0.14 13.0 2.1 4.6 4 0 0 4 4 4 0 Bacterial Ig domain Dodecin PF07311.12 gi|336477674|ref|YP_004616815.1| - 5.7e-15 55.3 0.2 8.9e-15 54.7 0.2 1.3 1 1 0 1 1 1 1 Dodecin TonB_2 PF13103.6 gi|336477674|ref|YP_004616815.1| - 0.047 13.9 0.0 0.069 13.4 0.0 1.4 1 1 0 1 1 1 0 TonB C terminal Fer4 PF00037.27 gi|336477675|ref|YP_004616816.1| - 1.1e-08 34.5 16.5 2.4e-05 23.9 4.1 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336477675|ref|YP_004616816.1| - 2.2e-08 33.8 15.8 1.2e-05 25.1 3.9 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336477675|ref|YP_004616816.1| - 5e-08 32.9 7.3 5e-08 32.9 7.3 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336477675|ref|YP_004616816.1| - 4.4e-07 30.4 12.0 0.0024 18.4 0.8 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|336477675|ref|YP_004616816.1| - 4.4e-06 27.3 9.3 0.00026 21.7 1.5 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_9 PF13187.6 gi|336477675|ref|YP_004616816.1| - 5.9e-06 26.3 6.3 5.9e-06 26.3 6.3 2.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336477675|ref|YP_004616816.1| - 1.1e-05 26.3 12.3 0.0048 17.8 3.0 2.7 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|336477675|ref|YP_004616816.1| - 0.00059 19.9 8.5 0.00059 19.9 8.5 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336477675|ref|YP_004616816.1| - 0.00099 19.1 15.1 0.0036 17.3 2.7 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_19 PF06902.11 gi|336477675|ref|YP_004616816.1| - 0.029 14.4 4.7 9.8 6.3 0.4 3.4 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_17 PF13534.6 gi|336477675|ref|YP_004616816.1| - 0.085 13.4 12.3 0.36 11.4 1.5 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336477675|ref|YP_004616816.1| - 0.12 13.0 4.1 0.12 13.0 4.1 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|336477675|ref|YP_004616816.1| - 0.91 10.0 16.1 2e+02 2.5 16.1 2.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336477675|ref|YP_004616816.1| - 5.2 8.3 22.4 5.5 8.2 0.6 3.7 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|336477675|ref|YP_004616816.1| - 7.5 7.5 15.1 0.26 12.1 2.0 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain CGGC PF08821.11 gi|336477676|ref|YP_004616817.1| - 5e-37 126.3 2.4 5.6e-37 126.2 2.4 1.0 1 0 0 1 1 1 1 CGGC domain Flavodoxin_1 PF00258.25 gi|336477677|ref|YP_004616818.1| - 1.1e-13 51.6 0.0 2.1e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.7 gi|336477677|ref|YP_004616818.1| - 0.00014 21.4 0.0 0.00036 20.1 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336477677|ref|YP_004616818.1| - 0.00023 21.2 0.0 0.00061 19.9 0.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_3 PF12641.7 gi|336477677|ref|YP_004616818.1| - 0.018 14.7 0.0 0.048 13.4 0.0 1.7 1 0 0 1 1 1 0 Flavodoxin domain FMN_red PF03358.15 gi|336477677|ref|YP_004616818.1| - 0.11 12.3 0.1 0.81 9.4 0.1 2.1 1 1 0 1 1 1 0 NADPH-dependent FMN reductase Rubrerythrin PF02915.17 gi|336477678|ref|YP_004616819.1| - 3.2e-16 60.0 4.7 5.3e-09 36.6 0.1 2.1 2 0 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.6 gi|336477678|ref|YP_004616819.1| - 3.4e-07 30.5 0.4 0.00079 19.6 0.0 2.2 1 1 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.10 gi|336477678|ref|YP_004616819.1| - 0.0072 16.7 1.3 0.17 12.2 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Inos-1-P_synth PF01658.17 gi|336477679|ref|YP_004616820.1| - 8.7e-32 109.6 0.0 1.4e-31 108.9 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|336477679|ref|YP_004616820.1| - 0.056 12.8 0.0 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase Flavoprotein PF02441.19 gi|336477681|ref|YP_004616822.1| - 2.7e-20 72.7 0.0 4.9e-20 71.9 0.0 1.4 2 0 0 2 2 2 1 Flavoprotein Rubrerythrin PF02915.17 gi|336477682|ref|YP_004616823.1| - 7.8e-35 120.3 5.9 9.4e-35 120.0 5.9 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|336477682|ref|YP_004616823.1| - 4.5e-11 42.8 2.0 9e-11 41.9 2.0 1.5 1 1 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.12 gi|336477682|ref|YP_004616823.1| - 6.6e-06 26.2 1.3 0.0052 16.8 0.1 2.1 1 1 0 2 2 2 2 Domain of unknown function (DUF892) LPP20 PF02169.16 gi|336477682|ref|YP_004616823.1| - 0.0005 20.4 0.6 0.29 11.5 0.0 2.2 2 0 0 2 2 2 2 LPP20 lipoprotein FCH PF00611.23 gi|336477682|ref|YP_004616823.1| - 0.0013 19.0 0.1 0.18 12.1 0.1 2.2 2 0 0 2 2 2 1 Fes/CIP4, and EFC/F-BAR homology domain Nudix_N_2 PF14803.6 gi|336477682|ref|YP_004616823.1| - 0.0028 17.5 1.5 0.19 11.7 0.1 2.4 2 0 0 2 2 2 1 Nudix N-terminal HypA PF01155.19 gi|336477682|ref|YP_004616823.1| - 0.0039 17.2 0.1 0.0068 16.4 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3231 PF11553.8 gi|336477682|ref|YP_004616823.1| - 0.005 16.5 0.0 0.0087 15.7 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3231) zf-C2HC5 PF06221.13 gi|336477682|ref|YP_004616823.1| - 0.025 14.5 0.3 0.041 13.9 0.3 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type RNA_POL_M_15KD PF02150.16 gi|336477682|ref|YP_004616823.1| - 0.032 14.1 0.2 0.032 14.1 0.2 1.8 2 0 0 2 2 1 0 RNA polymerases M/15 Kd subunit Ferritin_2 PF13668.6 gi|336477682|ref|YP_004616823.1| - 0.076 13.2 2.7 0.14 12.4 2.3 1.5 1 1 0 1 1 1 0 Ferritin-like domain COQ7 PF03232.13 gi|336477682|ref|YP_004616823.1| - 0.13 12.0 0.6 0.33 10.7 0.1 1.7 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 DUF2383 PF09537.10 gi|336477682|ref|YP_004616823.1| - 0.16 12.3 1.0 0.47 10.8 0.4 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF2383) Zn-ribbon_8 PF09723.10 gi|336477682|ref|YP_004616823.1| - 0.17 12.0 2.2 0.46 10.7 2.2 1.7 1 0 0 1 1 1 0 Zinc ribbon domain DUF3716 PF12511.8 gi|336477682|ref|YP_004616823.1| - 0.18 11.9 2.2 4.4 7.4 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3716) zinc_ribbon_2 PF13240.6 gi|336477682|ref|YP_004616823.1| - 0.4 10.5 4.2 0.94 9.3 4.2 1.7 1 0 0 1 1 1 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|336477682|ref|YP_004616823.1| - 0.43 10.7 4.2 65 3.7 3.5 3.1 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 HalOD2 PF18547.1 gi|336477682|ref|YP_004616823.1| - 4.1 7.4 6.1 2.9 7.8 0.4 2.6 2 1 1 3 3 3 0 Halobacterial output domain 2 zf-ribbon_3 PF13248.6 gi|336477682|ref|YP_004616823.1| - 7.3 6.1 6.6 6.9 6.2 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain NAD_binding_1 PF00175.21 gi|336477683|ref|YP_004616824.1| - 2.8e-20 73.0 0.0 3.8e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|336477683|ref|YP_004616824.1| - 4.1e-13 49.5 0.0 6.6e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|336477683|ref|YP_004616824.1| - 3.3e-06 27.3 0.1 0.00013 22.1 0.1 2.2 1 1 1 2 2 2 1 Ferric reductase NAD binding domain FAD_binding_8 PF08022.12 gi|336477683|ref|YP_004616824.1| - 6.4e-06 26.2 0.1 2.2e-05 24.5 0.1 1.9 1 1 0 1 1 1 1 FAD-binding domain G6PD_N PF00479.22 gi|336477683|ref|YP_004616824.1| - 0.14 12.7 0.0 0.59 10.7 0.0 1.8 2 0 0 2 2 2 0 Glucose-6-phosphate dehydrogenase, NAD binding domain FMN_red PF03358.15 gi|336477684|ref|YP_004616825.1| - 1.6e-31 109.1 0.0 2.6e-31 108.5 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|336477684|ref|YP_004616825.1| - 0.0005 19.8 0.0 0.0007 19.4 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold Polyhedrin PF00738.18 gi|336477684|ref|YP_004616825.1| - 0.036 13.4 0.0 0.059 12.7 0.0 1.3 1 0 0 1 1 1 0 Polyhedrin Cytochrome_C554 PF13435.6 gi|336477685|ref|YP_004616826.1| - 3.4e-09 37.5 10.6 5.9e-07 30.3 5.4 2.4 2 0 0 2 2 2 2 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.6 gi|336477685|ref|YP_004616826.1| - 4.5e-05 23.4 14.2 0.21 11.6 8.2 3.5 1 1 2 3 3 3 3 Cytochrome c7 and related cytochrome c C1_1 PF00130.22 gi|336477685|ref|YP_004616826.1| - 0.07 13.0 11.9 2.1 8.3 0.2 3.8 3 1 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Cytochrom_C552 PF02335.15 gi|336477685|ref|YP_004616826.1| - 0.071 12.0 8.1 0.2 10.6 2.0 2.8 1 1 1 2 2 2 0 Cytochrome c552 Cytochrom_c3_2 PF14537.6 gi|336477685|ref|YP_004616826.1| - 0.16 12.4 16.2 1.5 9.3 0.7 3.4 2 2 0 2 2 2 0 Cytochrome c3 Cytochrom_CIII PF02085.16 gi|336477685|ref|YP_004616826.1| - 0.69 10.3 13.5 29 5.1 7.7 3.3 1 1 1 2 2 2 0 Class III cytochrome C family DZR PF12773.7 gi|336477685|ref|YP_004616826.1| - 0.9 9.6 6.3 5.7 7.1 0.2 3.3 3 1 0 3 3 3 0 Double zinc ribbon PSCyt3 PF07627.11 gi|336477685|ref|YP_004616826.1| - 1.5 9.1 11.6 12 6.2 0.0 4.7 3 1 2 5 5 5 0 Protein of unknown function (DUF1588) Cytochrome_CBB3 PF13442.6 gi|336477685|ref|YP_004616826.1| - 3.7 7.9 20.0 3.9 7.9 0.3 4.8 3 1 2 5 5 5 0 Cytochrome C oxidase, cbb3-type, subunit III CMD PF02627.20 gi|336477686|ref|YP_004616827.1| - 9e-18 64.1 0.6 1.1e-17 63.8 0.6 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.13 gi|336477686|ref|YP_004616827.1| - 0.12 11.3 0.0 0.13 11.2 0.0 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) DUF2180 PF09947.9 gi|336477687|ref|YP_004616828.1| - 1.8e-25 88.7 8.9 2e-25 88.5 8.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.6 gi|336477687|ref|YP_004616828.1| - 0.0081 17.0 1.1 0.0081 17.0 1.1 2.2 2 1 0 2 2 2 1 DDE_Tnp_1-like zinc-ribbon zf-UBP_var PF17807.1 gi|336477687|ref|YP_004616828.1| - 0.0095 15.7 1.1 0.014 15.1 1.1 1.3 1 0 0 1 1 1 1 Variant UBP zinc finger Gin PF10764.9 gi|336477687|ref|YP_004616828.1| - 0.29 11.1 6.4 7.1 6.7 0.0 3.0 2 1 0 2 2 2 0 Inhibitor of sigma-G Gin DUF2180 PF09947.9 gi|336477688|ref|YP_004616829.1| - 7.4e-24 83.5 8.1 9.3e-24 83.2 8.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.21 gi|336477688|ref|YP_004616829.1| - 0.019 15.1 3.3 0.028 14.6 2.8 1.6 1 1 0 1 1 1 0 FYVE zinc finger zinc_ribbon_9 PF14369.6 gi|336477688|ref|YP_004616829.1| - 0.048 13.9 3.7 2.1 8.7 1.0 2.5 2 1 0 2 2 2 0 zinc-ribbon Tnp_zf-ribbon_2 PF13842.6 gi|336477688|ref|YP_004616829.1| - 0.049 14.4 5.7 0.14 13.0 1.3 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon ATF7IP_BD PF16788.5 gi|336477688|ref|YP_004616829.1| - 0.095 12.8 0.3 0.13 12.3 0.3 1.1 1 0 0 1 1 1 0 ATF-interacting protein binding domain zf-AN1 PF01428.16 gi|336477688|ref|YP_004616829.1| - 0.24 11.6 4.8 0.67 10.2 1.7 2.6 2 1 0 2 2 2 0 AN1-like Zinc finger MCR PF18509.1 gi|336477688|ref|YP_004616829.1| - 1 9.0 0.1 1 9.0 0.1 2.9 3 0 0 3 3 3 0 Magnetochrome domain Desulfoferrod_N PF06397.12 gi|336477689|ref|YP_004616830.1| - 1.6e-15 56.4 9.8 1.7e-15 56.4 9.8 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain zf-UDP PF14569.6 gi|336477689|ref|YP_004616830.1| - 0.0073 16.4 1.5 0.0076 16.3 1.5 1.2 1 0 0 1 1 1 1 Zinc-binding RING-finger zf_UBZ PF18439.1 gi|336477689|ref|YP_004616830.1| - 0.017 14.7 0.1 0.026 14.1 0.1 1.3 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger A2L_zn_ribbon PF08792.10 gi|336477689|ref|YP_004616830.1| - 0.043 13.6 4.5 0.1 12.3 4.4 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain Ribosomal_L37ae PF01780.19 gi|336477689|ref|YP_004616830.1| - 0.099 12.7 0.2 0.1 12.7 0.2 1.0 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF3449 PF11931.8 gi|336477689|ref|YP_004616830.1| - 0.15 11.8 0.2 0.16 11.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) ENT PF03735.14 gi|336477690|ref|YP_004616831.1| - 0.027 14.5 0.6 0.034 14.2 0.6 1.1 1 0 0 1 1 1 0 ENT domain Smoothelin PF12510.8 gi|336477690|ref|YP_004616831.1| - 0.17 12.0 2.1 12 6.1 0.2 2.1 2 0 0 2 2 2 0 Smoothelin cytoskeleton protein S-l_SbsC_C PF18316.1 gi|336477691|ref|YP_004616832.1| - 0.13 12.7 0.3 0.83 10.2 0.0 2.3 2 1 1 3 3 3 0 S-layer protein SbsC C-terminal domain SSF PF00474.17 gi|336477692|ref|YP_004616833.1| - 9e-35 120.3 37.0 1.2e-34 119.9 37.0 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family PBP_like_2 PF12849.7 gi|336477693|ref|YP_004616834.1| - 1.3e-22 80.8 0.0 1.6e-22 80.5 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|336477693|ref|YP_004616834.1| - 2.9e-07 30.5 0.0 4.3e-07 29.9 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|336477693|ref|YP_004616834.1| - 0.0012 18.0 0.0 0.0021 17.2 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain Phosphonate-bd PF12974.7 gi|336477693|ref|YP_004616834.1| - 0.02 14.5 0.1 0.052 13.1 0.1 1.6 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein OpuAC PF04069.12 gi|336477693|ref|YP_004616834.1| - 0.035 13.7 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.22 gi|336477694|ref|YP_004616835.1| - 1.2e-12 48.0 19.8 1.2e-12 48.0 19.8 1.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|336477695|ref|YP_004616836.1| - 4.9e-29 101.6 0.0 7.3e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336477695|ref|YP_004616836.1| - 1.1e-10 41.8 0.0 0.00049 20.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336477695|ref|YP_004616836.1| - 9.2e-07 28.5 0.1 0.00051 19.5 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|336477695|ref|YP_004616836.1| - 0.00019 21.4 0.0 0.00046 20.1 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|336477695|ref|YP_004616836.1| - 0.00049 20.1 0.7 0.012 15.5 0.0 2.4 2 2 0 2 2 2 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|336477695|ref|YP_004616836.1| - 0.0006 20.4 0.9 0.00088 19.8 0.9 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336477695|ref|YP_004616836.1| - 0.00063 19.4 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|336477695|ref|YP_004616836.1| - 0.001 19.5 0.1 0.0025 18.2 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|336477695|ref|YP_004616836.1| - 0.0012 18.6 0.3 0.062 13.0 0.0 2.8 2 1 1 3 3 3 1 IstB-like ATP binding protein AAA_15 PF13175.6 gi|336477695|ref|YP_004616836.1| - 0.0012 18.6 0.0 0.057 13.1 0.0 2.3 1 1 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|336477695|ref|YP_004616836.1| - 0.0014 17.5 0.1 0.19 10.5 0.0 2.7 2 1 1 3 3 3 1 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|336477695|ref|YP_004616836.1| - 0.0036 17.6 0.2 0.056 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|336477695|ref|YP_004616836.1| - 0.0098 15.9 0.1 0.025 14.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|336477695|ref|YP_004616836.1| - 0.013 15.7 0.9 0.15 12.2 0.9 2.3 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|336477695|ref|YP_004616836.1| - 0.015 15.0 0.0 0.025 14.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain DnaB_2 PF07261.11 gi|336477695|ref|YP_004616836.1| - 0.02 14.6 0.0 0.1 12.4 0.0 2.0 2 0 0 2 2 2 0 Replication initiation and membrane attachment AAA_18 PF13238.6 gi|336477695|ref|YP_004616836.1| - 0.023 15.2 0.8 0.66 10.5 0.8 2.2 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|336477695|ref|YP_004616836.1| - 0.084 12.4 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|336477695|ref|YP_004616836.1| - 0.13 12.3 0.4 0.29 11.2 0.4 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Gtr1_RagA PF04670.12 gi|336477695|ref|YP_004616836.1| - 0.58 9.5 4.8 6.5 6.0 0.4 3.1 2 1 0 2 2 2 0 Gtr1/RagA G protein conserved region TOBE PF03459.17 gi|336477696|ref|YP_004616837.1| - 1.9e-15 56.9 0.1 3e-15 56.3 0.1 1.3 1 0 0 1 1 1 1 TOBE domain HTH_1 PF00126.27 gi|336477696|ref|YP_004616837.1| - 1.8e-10 40.6 0.0 2.6e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family NPCBM_assoc PF10633.9 gi|336477697|ref|YP_004616838.1| - 0.00097 19.3 0.0 1.8 8.9 0.0 2.7 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|336477697|ref|YP_004616838.1| - 0.096 13.0 0.0 0.63 10.3 0.0 2.3 2 1 0 2 2 2 0 CARDB NPCBM_assoc PF10633.9 gi|336477698|ref|YP_004616839.1| - 1.8e-06 28.1 0.0 0.063 13.5 0.0 2.7 2 1 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|336477698|ref|YP_004616839.1| - 1.1e-05 25.7 0.5 4.7e-05 23.6 0.2 2.1 2 1 0 2 2 2 1 CARDB DUF11 PF01345.18 gi|336477698|ref|YP_004616839.1| - 0.0061 16.8 0.3 0.22 11.8 0.1 3.0 2 1 0 2 2 2 1 Domain of unknown function DUF11 DUF974 PF06159.13 gi|336477698|ref|YP_004616839.1| - 0.068 13.0 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF974) MMPL PF03176.15 gi|336477699|ref|YP_004616840.1| - 2.3e-52 178.0 11.6 3.1e-30 105.3 1.1 2.8 2 1 0 3 3 3 2 MMPL family Sterol-sensing PF12349.8 gi|336477699|ref|YP_004616840.1| - 1.3e-12 47.8 13.0 1.3e-06 28.3 0.3 3.2 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|336477699|ref|YP_004616840.1| - 4.1e-09 36.1 6.8 4.1e-09 36.1 6.8 2.4 2 0 0 2 2 2 2 Protein export membrane protein Patched PF02460.18 gi|336477699|ref|YP_004616840.1| - 5e-09 34.8 15.1 1.2e-05 23.6 5.4 3.1 3 0 0 3 3 3 3 Patched family ACR_tran PF00873.19 gi|336477699|ref|YP_004616840.1| - 1.6e-08 32.8 13.2 4e-06 24.8 2.5 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family TetR_N PF00440.23 gi|336477700|ref|YP_004616841.1| - 2.2e-14 53.0 0.2 3.4e-14 52.3 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_3 PF08362.11 gi|336477700|ref|YP_004616841.1| - 0.014 15.3 0.1 0.023 14.6 0.1 1.3 1 0 0 1 1 1 0 YcdC-like protein, C-terminal region DUF1858 PF08984.11 gi|336477700|ref|YP_004616841.1| - 0.08 13.1 0.0 0.67 10.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1858) Phage_CI_repr PF07022.13 gi|336477700|ref|YP_004616841.1| - 0.12 12.5 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Lactamase_B_3 PF13483.6 gi|336477701|ref|YP_004616842.1| - 5e-38 130.5 0.2 6e-38 130.3 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|336477701|ref|YP_004616842.1| - 5e-16 58.8 0.6 9.4e-16 57.9 0.6 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336477701|ref|YP_004616842.1| - 0.0071 16.4 1.1 0.68 9.9 0.5 2.4 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily DUF5417 PF17438.2 gi|336477701|ref|YP_004616842.1| - 0.011 16.1 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5417) Rpr2 PF04032.16 gi|336477702|ref|YP_004616843.1| - 1e-16 61.0 1.5 1.4e-16 60.5 1.5 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF4674 PF15719.5 gi|336477702|ref|YP_004616843.1| - 0.2 11.7 2.8 0.67 10.0 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4674) FeoB_C PF07664.12 gi|336477703|ref|YP_004616844.1| - 0.59 9.9 3.3 0.77 9.5 3.3 1.2 1 0 0 1 1 1 0 Ferrous iron transport protein B C terminus TrmB PF01978.19 gi|336477704|ref|YP_004616845.1| - 5.9e-06 26.1 0.1 7.3e-06 25.8 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|336477704|ref|YP_004616845.1| - 2.2e-05 24.4 0.0 2.4e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|336477704|ref|YP_004616845.1| - 0.00069 19.5 0.0 0.0009 19.1 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|336477704|ref|YP_004616845.1| - 0.0011 18.7 0.2 0.0012 18.6 0.2 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.22 gi|336477704|ref|YP_004616845.1| - 0.0021 17.9 0.0 0.0031 17.4 0.0 1.2 1 0 0 1 1 1 1 MarR family DUF4423 PF14394.6 gi|336477704|ref|YP_004616845.1| - 0.0031 17.3 0.0 0.0033 17.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) ANAPC2 PF08672.11 gi|336477704|ref|YP_004616845.1| - 0.0039 17.7 0.4 0.022 15.2 0.4 2.0 1 1 0 1 1 1 1 Anaphase promoting complex (APC) subunit 2 Fe_dep_repress PF01325.19 gi|336477704|ref|YP_004616845.1| - 0.0083 16.3 0.1 0.012 15.8 0.0 1.3 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|336477704|ref|YP_004616845.1| - 0.032 14.2 0.0 0.045 13.7 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF5457 PF17540.2 gi|336477704|ref|YP_004616845.1| - 0.071 13.2 0.1 0.091 12.9 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5457) Rrf2 PF02082.20 gi|336477704|ref|YP_004616845.1| - 0.072 13.4 0.0 0.088 13.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|336477704|ref|YP_004616845.1| - 0.095 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|336477705|ref|YP_004616846.1| - 0.0013 18.2 0.0 0.0027 17.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336477705|ref|YP_004616846.1| - 0.0036 17.2 0.0 0.0042 16.9 0.0 1.3 1 1 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.12 gi|336477705|ref|YP_004616846.1| - 0.0061 16.2 0.0 0.0099 15.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|336477705|ref|YP_004616846.1| - 0.015 15.0 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_9 PF08221.11 gi|336477705|ref|YP_004616846.1| - 0.021 14.9 0.0 0.033 14.3 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|336477705|ref|YP_004616846.1| - 0.023 14.6 0.0 0.036 13.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|336477705|ref|YP_004616846.1| - 0.042 14.0 0.0 0.1 12.7 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 gi|336477705|ref|YP_004616846.1| - 0.067 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 MerR family regulatory protein HATPase_c PF02518.26 gi|336477706|ref|YP_004616847.1| - 1e-26 93.6 0.8 1.8e-26 92.8 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|336477706|ref|YP_004616847.1| - 1.7e-22 80.2 0.0 2.5e-22 79.7 0.0 1.3 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.12 gi|336477706|ref|YP_004616847.1| - 3.2e-16 59.4 0.1 1.6e-15 57.2 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|336477706|ref|YP_004616847.1| - 6.5e-05 23.1 1.0 0.00039 20.6 0.1 2.6 3 0 0 3 3 3 1 PAS domain PAS PF00989.25 gi|336477706|ref|YP_004616847.1| - 9.8e-05 22.3 0.0 0.00062 19.8 0.0 2.4 2 0 0 2 2 2 1 PAS fold GAF PF01590.26 gi|336477706|ref|YP_004616847.1| - 0.00052 20.7 0.0 0.0009 19.9 0.0 1.3 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|336477706|ref|YP_004616847.1| - 0.057 13.8 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 GAF domain DUF1724 PF08350.10 gi|336477707|ref|YP_004616848.1| - 1.8e-23 82.4 0.5 3.9e-23 81.4 0.5 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|336477707|ref|YP_004616848.1| - 2e-06 27.5 0.2 4.7e-06 26.4 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|336477707|ref|YP_004616848.1| - 0.0023 17.8 0.1 0.0079 16.1 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|336477707|ref|YP_004616848.1| - 0.0091 16.0 1.4 0.0091 16.0 1.4 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|336477707|ref|YP_004616848.1| - 0.014 15.3 0.4 0.031 14.2 0.4 1.6 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.6 gi|336477707|ref|YP_004616848.1| - 0.017 15.3 0.6 0.041 14.1 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain MarR PF01047.22 gi|336477707|ref|YP_004616848.1| - 0.033 14.1 0.0 0.19 11.7 0.1 2.2 2 0 0 2 2 2 0 MarR family MarR_2 PF12802.7 gi|336477707|ref|YP_004616848.1| - 0.056 13.3 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 MarR family DUF4423 PF14394.6 gi|336477707|ref|YP_004616848.1| - 0.065 12.9 0.1 0.1 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) URO-D PF01208.17 gi|336477708|ref|YP_004616849.1| - 7.9e-58 196.2 0.0 5.3e-57 193.5 0.0 2.0 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.19 gi|336477708|ref|YP_004616849.1| - 2.3e-24 85.7 0.4 9.7e-24 83.7 0.2 2.1 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.17 gi|336477708|ref|YP_004616849.1| - 1.3e-17 63.9 0.6 4.7e-17 62.2 0.1 2.3 2 0 0 2 2 2 1 B12 binding domain FtsZ_C PF12327.8 gi|336477708|ref|YP_004616849.1| - 0.038 14.3 0.7 5.2 7.4 0.0 2.6 2 0 0 2 2 2 0 FtsZ family, C-terminal domain Hydantoinase_A PF01968.18 gi|336477709|ref|YP_004616850.1| - 5.2e-30 104.7 0.3 5.2e-30 104.7 0.3 2.1 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|336477709|ref|YP_004616850.1| - 5.2e-28 98.0 4.6 2.1e-24 86.2 0.7 3.4 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|336477709|ref|YP_004616850.1| - 2e-05 23.4 4.3 0.0095 14.6 0.1 2.2 2 0 0 2 2 2 2 MutL protein Sigma70_r4 PF04545.16 gi|336477709|ref|YP_004616850.1| - 0.07 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 StbA PF06406.11 gi|336477709|ref|YP_004616850.1| - 0.1 11.9 0.3 0.21 10.8 0.3 1.5 1 0 0 1 1 1 0 StbA protein Cpn60_TCP1 PF00118.24 gi|336477710|ref|YP_004616851.1| - 1.1e-111 373.9 0.1 1.2e-111 373.7 0.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.17 gi|336477710|ref|YP_004616851.1| - 0.023 14.6 0.1 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 DAK2 domain URO-D PF01208.17 gi|336477711|ref|YP_004616852.1| - 2.9e-74 250.3 0.0 3.2e-74 250.1 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Phage_attach PF05354.11 gi|336477711|ref|YP_004616852.1| - 0.045 13.6 0.0 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 Phage Head-Tail Attachment cobW PF02492.19 gi|336477712|ref|YP_004616853.1| - 4.3e-21 75.3 0.0 5.3e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|336477712|ref|YP_004616853.1| - 3.5e-05 23.7 0.1 7.7e-05 22.6 0.1 1.6 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.22 gi|336477712|ref|YP_004616853.1| - 0.00071 19.3 0.2 0.0015 18.2 0.2 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain PduV-EutP PF10662.9 gi|336477712|ref|YP_004616853.1| - 0.0019 17.9 2.0 0.19 11.5 0.2 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation LpxK PF02606.14 gi|336477712|ref|YP_004616853.1| - 0.0026 16.9 0.5 0.013 14.6 0.4 1.9 2 0 0 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_16 PF13191.6 gi|336477712|ref|YP_004616853.1| - 0.0027 18.1 0.0 0.0029 18.0 0.0 1.2 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|336477712|ref|YP_004616853.1| - 0.0076 15.7 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|336477712|ref|YP_004616853.1| - 0.0083 16.7 0.1 0.016 15.7 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.6 gi|336477712|ref|YP_004616853.1| - 0.0091 16.0 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|336477712|ref|YP_004616853.1| - 0.013 15.6 0.1 0.043 13.9 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase MeaB PF03308.16 gi|336477712|ref|YP_004616853.1| - 0.015 14.3 2.7 0.037 13.0 2.7 1.8 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF815 PF05673.13 gi|336477712|ref|YP_004616853.1| - 0.027 13.6 0.1 0.051 12.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ATP_bind_2 PF03668.15 gi|336477712|ref|YP_004616853.1| - 0.036 13.4 0.0 0.052 12.9 0.0 1.2 1 0 0 1 1 1 0 P-loop ATPase protein family RsgA_GTPase PF03193.16 gi|336477712|ref|YP_004616853.1| - 0.043 13.7 0.3 4.9 7.0 0.1 2.1 2 0 0 2 2 2 0 RsgA GTPase AAA PF00004.29 gi|336477712|ref|YP_004616853.1| - 0.062 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|336477712|ref|YP_004616853.1| - 0.065 13.0 0.4 0.21 11.4 0.2 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|336477712|ref|YP_004616853.1| - 0.074 12.3 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|336477712|ref|YP_004616853.1| - 0.088 13.0 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|336477712|ref|YP_004616853.1| - 0.11 12.1 0.1 0.2 11.3 0.1 1.4 1 1 0 1 1 1 0 Thymidylate kinase SRPRB PF09439.10 gi|336477712|ref|YP_004616853.1| - 0.11 11.9 0.2 1.1 8.7 0.0 2.1 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_22 PF13401.6 gi|336477712|ref|YP_004616853.1| - 0.13 12.5 0.1 0.16 12.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|336477712|ref|YP_004616853.1| - 0.14 12.3 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|336477712|ref|YP_004616853.1| - 0.15 12.0 0.5 0.21 11.5 0.5 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea BMFP PF04380.13 gi|336477712|ref|YP_004616853.1| - 0.18 12.3 0.0 0.37 11.3 0.0 1.4 1 0 0 1 1 1 0 Membrane fusogenic activity ABC_tran PF00005.27 gi|336477712|ref|YP_004616853.1| - 0.2 12.1 0.0 0.28 11.7 0.0 1.3 1 0 0 1 1 1 0 ABC transporter HATPase_c PF02518.26 gi|336477713|ref|YP_004616854.1| - 2.5e-32 111.7 1.5 3.7e-32 111.1 0.2 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|336477713|ref|YP_004616854.1| - 1.1e-26 93.7 0.0 2e-26 92.9 0.0 1.4 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|336477713|ref|YP_004616854.1| - 6.9e-15 54.8 5.4 7.4e-15 54.7 0.1 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|336477713|ref|YP_004616854.1| - 2.1e-07 31.2 0.0 6.2e-07 29.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|336477713|ref|YP_004616854.1| - 6e-05 23.0 0.0 0.00025 21.0 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.6 gi|336477713|ref|YP_004616854.1| - 0.00013 21.8 0.0 0.00027 20.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|336477713|ref|YP_004616854.1| - 0.00014 21.8 0.1 0.00049 20.1 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|336477713|ref|YP_004616854.1| - 0.00098 19.4 0.0 0.0024 18.1 0.0 1.7 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 gi|336477713|ref|YP_004616854.1| - 0.0032 17.4 0.0 0.0078 16.1 0.0 1.6 1 0 0 1 1 1 1 GHKL domain DUF677 PF05055.12 gi|336477713|ref|YP_004616854.1| - 0.021 13.7 2.5 0.37 9.7 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF677) Img2 PF05046.14 gi|336477713|ref|YP_004616854.1| - 0.069 13.5 0.1 0.44 10.9 0.0 2.4 2 0 0 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) SpoVT_C PF15714.5 gi|336477713|ref|YP_004616854.1| - 0.087 12.9 0.1 0.73 9.9 0.0 2.3 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor HATPase_c_2 PF13581.6 gi|336477713|ref|YP_004616854.1| - 0.1 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain LMBR1 PF04791.16 gi|336477713|ref|YP_004616854.1| - 0.21 10.5 0.8 0.3 10.0 0.8 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Muted PF14942.6 gi|336477713|ref|YP_004616854.1| - 3.2 8.1 6.9 4.8 7.5 4.7 2.4 2 1 0 2 2 2 0 Organelle biogenesis, Muted-like protein Exonuc_VII_S PF02609.16 gi|336477714|ref|YP_004616855.1| - 1.8e-19 69.5 4.4 2.4e-19 69.1 4.4 1.2 1 0 0 1 1 1 1 Exonuclease VII small subunit KxDL PF10241.9 gi|336477714|ref|YP_004616855.1| - 0.0018 18.5 0.3 0.0028 17.9 0.3 1.4 1 1 0 1 1 1 1 Uncharacterized conserved protein YihI PF04220.12 gi|336477714|ref|YP_004616855.1| - 0.016 14.9 6.4 0.027 14.2 6.4 1.4 1 1 0 1 1 1 0 Der GTPase activator (YihI) Vps53_N PF04100.12 gi|336477714|ref|YP_004616855.1| - 0.019 14.0 0.7 0.021 13.8 0.7 1.0 1 0 0 1 1 1 0 Vps53-like, N-terminal DUF1465 PF07323.12 gi|336477714|ref|YP_004616855.1| - 0.042 13.7 0.6 0.36 10.7 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) ATP-synt_DE PF00401.20 gi|336477714|ref|YP_004616855.1| - 0.14 12.5 1.6 9.3 6.6 0.1 2.2 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HR1 PF02185.16 gi|336477714|ref|YP_004616855.1| - 0.32 11.2 5.2 1.9 8.7 0.6 2.2 1 1 0 2 2 2 0 Hr1 repeat Exonuc_VII_L PF02601.15 gi|336477715|ref|YP_004616856.1| - 4e-87 292.6 0.2 5.4e-75 252.8 0.1 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|336477715|ref|YP_004616856.1| - 1.1e-30 105.7 0.1 2.2e-30 104.7 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|336477715|ref|YP_004616856.1| - 2.7e-05 24.1 0.0 5.4e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RBD-FIP PF09457.10 gi|336477715|ref|YP_004616856.1| - 0.054 13.4 1.3 3.3 7.7 0.0 2.8 3 0 0 3 3 3 0 FIP domain RecJ_OB PF17768.1 gi|336477715|ref|YP_004616856.1| - 0.065 13.5 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 RecJ OB domain Fe-ADH PF00465.19 gi|336477715|ref|YP_004616856.1| - 0.079 11.8 0.0 0.12 11.1 0.0 1.3 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase RNA_pol_Rpb4 PF03874.16 gi|336477715|ref|YP_004616856.1| - 0.084 13.2 0.2 0.25 11.7 0.0 1.9 2 0 0 2 2 2 0 RNA polymerase Rpb4 Beta_helix PF13229.6 gi|336477716|ref|YP_004616857.1| - 4.4e-10 39.6 31.0 3.7e-06 26.9 6.9 3.4 1 1 2 3 3 3 3 Right handed beta helix region Pectinesterase PF01095.19 gi|336477716|ref|YP_004616857.1| - 0.00052 18.8 4.2 0.14 10.9 0.2 2.3 2 0 0 2 2 2 2 Pectinesterase H_lectin PF09458.10 gi|336477716|ref|YP_004616857.1| - 0.033 14.4 2.3 1.4 9.2 0.0 3.1 3 1 0 3 3 3 0 H-type lectin domain Beta_helix PF13229.6 gi|336477717|ref|YP_004616858.1| - 5e-15 55.7 45.7 4.2e-10 39.7 16.5 4.2 3 1 1 4 4 4 3 Right handed beta helix region NosD PF05048.13 gi|336477717|ref|YP_004616858.1| - 1.4e-11 44.2 34.5 1.4e-09 37.6 10.2 3.9 3 1 1 4 4 4 3 Periplasmic copper-binding protein (NosD) Pectinesterase PF01095.19 gi|336477717|ref|YP_004616858.1| - 0.0032 16.2 1.2 0.029 13.1 1.0 2.1 2 0 0 2 2 2 1 Pectinesterase PGF-CTERM PF18204.1 gi|336477718|ref|YP_004616859.1| - 0.00019 21.3 4.2 0.00035 20.4 4.2 1.5 1 0 0 1 1 1 1 PGF-CTERM motif DUF167 PF02594.16 gi|336477719|ref|YP_004616860.1| - 1.2e-20 73.4 0.0 1.4e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 CBM53 PF16760.5 gi|336477719|ref|YP_004616860.1| - 0.15 12.7 0.0 0.18 12.4 0.0 1.2 1 0 0 1 1 1 0 Starch/carbohydrate-binding module (family 53) Toprim_4 PF13662.6 gi|336477720|ref|YP_004616861.1| - 1.8e-08 34.7 0.0 5e-08 33.3 0.0 1.7 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.22 gi|336477720|ref|YP_004616861.1| - 1.3e-05 25.3 0.2 6.5e-05 23.1 0.2 2.1 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|336477720|ref|YP_004616861.1| - 4.4e-05 23.8 0.0 7e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Toprim-like Toprim_3 PF13362.6 gi|336477720|ref|YP_004616861.1| - 0.0015 18.9 0.0 0.0021 18.4 0.0 1.3 1 0 0 1 1 1 1 Toprim domain HAD_SAK_2 PF18143.1 gi|336477720|ref|YP_004616861.1| - 0.048 14.0 0.0 0.098 13.0 0.0 1.5 1 1 0 1 1 1 0 HAD domain in Swiss Army Knife RNA repair proteins Plant_NMP1 PF06694.11 gi|336477720|ref|YP_004616861.1| - 0.067 12.3 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 Plant nuclear matrix protein 1 (NMP1) EF-hand_9 PF14658.6 gi|336477720|ref|YP_004616861.1| - 0.15 12.4 0.0 0.33 11.3 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain AA_kinase PF00696.28 gi|336477721|ref|YP_004616862.1| - 1.5e-43 149.2 0.1 2e-43 148.8 0.1 1.2 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.20 gi|336477721|ref|YP_004616862.1| - 1.3e-16 60.3 0.1 2.4e-16 59.5 0.1 1.5 1 0 0 1 1 1 1 PUA domain DUF4135 PF13575.6 gi|336477721|ref|YP_004616862.1| - 0.19 11.0 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4135) Aldedh PF00171.22 gi|336477722|ref|YP_004616863.1| - 3.5e-13 48.9 0.1 6.6e-10 38.1 0.0 2.5 2 1 0 2 2 2 2 Aldehyde dehydrogenase family MAT1 PF06391.13 gi|336477722|ref|YP_004616863.1| - 0.85 9.4 5.6 0.44 10.3 2.6 1.8 2 0 0 2 2 2 0 CDK-activating kinase assembly factor MAT1 DUF356 PF04009.12 gi|336477723|ref|YP_004616864.1| - 1.3e-42 144.3 0.0 1.5e-42 144.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) P5CR_dimer PF14748.6 gi|336477724|ref|YP_004616865.1| - 9.7e-40 135.0 0.3 1.8e-39 134.2 0.3 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|336477724|ref|YP_004616865.1| - 2.7e-21 76.0 0.9 5.5e-21 75.0 0.3 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|336477724|ref|YP_004616865.1| - 1.1e-06 28.9 0.4 5.8e-06 26.5 0.4 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|336477724|ref|YP_004616865.1| - 0.0007 19.6 0.4 0.0007 19.6 0.4 2.1 1 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|336477724|ref|YP_004616865.1| - 0.00092 18.9 0.1 0.0021 17.7 0.1 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA PDH PF02153.17 gi|336477724|ref|YP_004616865.1| - 0.0056 15.7 0.5 0.026 13.5 0.5 1.8 1 1 0 1 1 1 1 Prephenate dehydrogenase DapB_N PF01113.20 gi|336477724|ref|YP_004616865.1| - 0.061 13.4 0.1 0.15 12.2 0.1 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus HTH_3 PF01381.22 gi|336477725|ref|YP_004616866.1| - 8.8e-13 48.1 0.8 1.3e-12 47.5 0.8 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|336477725|ref|YP_004616866.1| - 7.9e-09 35.4 1.1 1.3e-08 34.8 1.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|336477725|ref|YP_004616866.1| - 6.3e-08 32.9 0.0 1e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|336477725|ref|YP_004616866.1| - 0.00078 19.3 0.5 0.0013 18.5 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|336477725|ref|YP_004616866.1| - 0.1 12.6 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain VBS PF08913.10 gi|336477725|ref|YP_004616866.1| - 0.15 12.5 0.0 0.24 11.8 0.0 1.4 1 1 0 1 1 1 0 Vinculin Binding Site AAA PF00004.29 gi|336477726|ref|YP_004616867.1| - 1.5e-44 151.6 0.6 8.7e-44 149.1 0.0 2.4 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336477726|ref|YP_004616867.1| - 1.3e-13 50.5 2.0 1.6e-13 50.2 0.2 2.1 2 0 0 2 2 2 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|336477726|ref|YP_004616867.1| - 8.6e-13 48.0 0.1 1.8e-12 47.0 0.1 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_5 PF07728.14 gi|336477726|ref|YP_004616867.1| - 2.3e-08 34.1 0.2 1.8e-07 31.3 0.1 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|336477726|ref|YP_004616867.1| - 4.8e-07 30.3 1.2 0.00012 22.5 0.0 2.7 2 1 1 3 3 2 1 AAA ATPase domain AAA_2 PF07724.14 gi|336477726|ref|YP_004616867.1| - 2.7e-06 27.6 0.0 6.8e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|336477726|ref|YP_004616867.1| - 8.4e-06 25.1 0.0 1.8e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Prot_ATP_OB_N PF17758.1 gi|336477726|ref|YP_004616867.1| - 1.4e-05 24.7 0.1 3.5e-05 23.4 0.1 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_22 PF13401.6 gi|336477726|ref|YP_004616867.1| - 3.8e-05 24.0 0.3 0.0078 16.5 0.1 2.7 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|336477726|ref|YP_004616867.1| - 0.0001 22.1 0.0 0.0002 21.1 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|336477726|ref|YP_004616867.1| - 0.00021 21.6 0.2 0.00056 20.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|336477726|ref|YP_004616867.1| - 0.00032 21.3 0.0 0.004 17.7 0.0 2.6 2 1 0 3 3 3 1 AAA domain AAA_7 PF12775.7 gi|336477726|ref|YP_004616867.1| - 0.0013 18.3 0.0 0.0053 16.3 0.0 1.9 1 1 0 1 1 1 1 P-loop containing dynein motor region AAA_14 PF13173.6 gi|336477726|ref|YP_004616867.1| - 0.0014 18.7 0.1 0.01 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|336477726|ref|YP_004616867.1| - 0.0022 18.1 0.1 0.0055 16.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|336477726|ref|YP_004616867.1| - 0.0024 17.2 2.2 0.041 13.2 0.0 3.0 2 1 1 3 3 3 1 KaiC Troponin PF00992.20 gi|336477726|ref|YP_004616867.1| - 0.0027 18.0 7.6 0.0066 16.7 7.6 1.6 1 0 0 1 1 1 1 Troponin TIP49 PF06068.13 gi|336477726|ref|YP_004616867.1| - 0.0032 16.7 0.0 0.0056 15.9 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain ATPase_2 PF01637.18 gi|336477726|ref|YP_004616867.1| - 0.0041 17.1 1.0 0.37 10.7 0.0 2.8 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|336477726|ref|YP_004616867.1| - 0.0049 16.6 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein JAKMIP_CC3 PF16034.5 gi|336477726|ref|YP_004616867.1| - 0.0079 16.2 0.1 0.016 15.2 0.1 1.5 1 0 0 1 1 1 1 JAKMIP CC3 domain Sigma54_activat PF00158.26 gi|336477726|ref|YP_004616867.1| - 0.0083 15.8 0.1 0.094 12.4 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|336477726|ref|YP_004616867.1| - 0.0084 15.5 0.0 0.019 14.4 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|336477726|ref|YP_004616867.1| - 0.016 15.6 0.0 0.041 14.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_3 PF07726.11 gi|336477726|ref|YP_004616867.1| - 0.022 14.6 0.0 0.044 13.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|336477726|ref|YP_004616867.1| - 0.023 14.4 0.7 0.046 13.4 0.1 1.9 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|336477726|ref|YP_004616867.1| - 0.026 14.2 0.1 0.086 12.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain SKA2 PF16740.5 gi|336477726|ref|YP_004616867.1| - 0.031 14.1 0.6 0.11 12.3 0.6 1.9 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 Cgr1 PF03879.14 gi|336477726|ref|YP_004616867.1| - 0.04 14.3 4.5 0.07 13.5 4.5 1.3 1 0 0 1 1 1 0 Cgr1 family AAA_11 PF13086.6 gi|336477726|ref|YP_004616867.1| - 0.043 13.6 0.7 0.53 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.17 gi|336477726|ref|YP_004616867.1| - 0.045 12.8 0.0 0.079 12.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NB-ARC PF00931.22 gi|336477726|ref|YP_004616867.1| - 0.047 12.9 0.0 1 8.5 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain TsaE PF02367.17 gi|336477726|ref|YP_004616867.1| - 0.055 13.5 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|336477726|ref|YP_004616867.1| - 0.061 12.9 0.8 0.4 10.2 0.1 2.3 1 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|336477726|ref|YP_004616867.1| - 0.12 12.9 0.5 1.3 9.6 0.0 2.5 2 1 0 2 2 2 0 ABC transporter ADIP PF11559.8 gi|336477726|ref|YP_004616867.1| - 0.26 11.4 4.8 0.59 10.2 4.8 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding AAA_17 PF13207.6 gi|336477726|ref|YP_004616867.1| - 0.34 11.4 3.6 0.54 10.7 0.4 3.0 2 2 0 2 2 2 0 AAA domain Tektin PF03148.14 gi|336477726|ref|YP_004616867.1| - 0.53 9.0 6.7 0.13 10.9 2.6 2.0 3 0 0 3 3 3 0 Tektin family DUF99 PF01949.16 gi|336477727|ref|YP_004616868.1| - 6.7e-63 211.4 0.4 7.8e-63 211.2 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Endonuclease_5 PF04493.14 gi|336477727|ref|YP_004616868.1| - 0.00087 19.0 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 Endonuclease V Ribosomal_L50 PF10501.9 gi|336477727|ref|YP_004616868.1| - 0.012 15.8 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal subunit 39S PGM_PMM_I PF02878.16 gi|336477728|ref|YP_004616869.1| - 3.7e-41 140.1 0.1 1.1e-40 138.5 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|336477728|ref|YP_004616869.1| - 6.1e-26 91.0 0.0 1.3e-25 90.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|336477728|ref|YP_004616869.1| - 5.8e-25 87.7 0.1 1.4e-24 86.5 0.1 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|336477728|ref|YP_004616869.1| - 1.2e-11 44.6 0.0 3.1e-11 43.3 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Asn_synthase PF00733.21 gi|336477729|ref|YP_004616870.1| - 2.2e-10 40.7 0.0 2.7e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|336477729|ref|YP_004616870.1| - 1.5e-08 34.1 0.0 2.2e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|336477729|ref|YP_004616870.1| - 1.1e-07 31.1 0.5 4.8e-05 22.3 0.4 2.5 2 1 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|336477729|ref|YP_004616870.1| - 3.9e-07 29.8 0.0 1.5e-06 27.9 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|336477729|ref|YP_004616870.1| - 0.00024 20.9 0.1 0.00036 20.3 0.1 1.3 1 0 0 1 1 1 1 PP-loop family ThiI PF02568.14 gi|336477729|ref|YP_004616870.1| - 0.0015 18.2 0.0 0.0021 17.7 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 gi|336477729|ref|YP_004616870.1| - 0.011 15.1 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase PAPS_reduct PF01507.19 gi|336477729|ref|YP_004616870.1| - 0.024 14.7 0.0 0.14 12.2 0.0 2.0 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family DUF1679 PF07914.11 gi|336477729|ref|YP_004616870.1| - 0.059 12.2 0.0 0.088 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) Acetyltransf_7 PF13508.7 gi|336477730|ref|YP_004616871.1| - 1.8e-10 41.1 0.0 2.6e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336477730|ref|YP_004616871.1| - 1.6e-09 37.8 0.0 2.3e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336477730|ref|YP_004616871.1| - 1.8e-09 37.8 0.0 2.3e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|336477730|ref|YP_004616871.1| - 0.00021 21.4 0.3 0.0015 18.6 0.3 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336477730|ref|YP_004616871.1| - 0.0011 18.9 0.0 0.0027 17.6 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|336477730|ref|YP_004616871.1| - 0.021 15.0 0.0 0.034 14.3 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|336477730|ref|YP_004616871.1| - 0.037 13.5 0.0 0.056 12.9 0.0 1.4 1 1 0 1 1 1 0 Putative acetyl-transferase DUF531 PF04407.12 gi|336477731|ref|YP_004616872.1| - 7.1e-83 276.8 0.0 8.1e-83 276.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.6 gi|336477731|ref|YP_004616872.1| - 5.7e-05 22.5 0.0 8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP TrmB PF01978.19 gi|336477732|ref|YP_004616873.1| - 4.8e-20 71.2 0.0 7.7e-20 70.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|336477732|ref|YP_004616873.1| - 0.00045 20.1 0.1 0.0011 18.8 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|336477732|ref|YP_004616873.1| - 0.0031 17.3 0.0 0.0072 16.2 0.0 1.8 1 1 0 1 1 1 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|336477732|ref|YP_004616873.1| - 0.01 16.1 0.0 0.025 14.9 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator HTH_IclR PF09339.10 gi|336477732|ref|YP_004616873.1| - 0.013 15.3 0.0 0.1 12.4 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|336477732|ref|YP_004616873.1| - 0.02 15.3 0.0 0.033 14.5 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_29 PF13551.6 gi|336477732|ref|YP_004616873.1| - 0.026 14.6 0.0 0.043 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix MarR_2 PF12802.7 gi|336477732|ref|YP_004616873.1| - 0.045 13.6 0.0 0.095 12.6 0.0 1.5 1 1 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|336477732|ref|YP_004616873.1| - 0.062 13.5 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|336477732|ref|YP_004616873.1| - 0.072 13.6 0.1 3.5 8.2 0.0 2.6 1 1 2 3 3 3 0 Winged helix DNA-binding domain MarR PF01047.22 gi|336477732|ref|YP_004616873.1| - 0.097 12.6 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 MarR family FUR PF01475.19 gi|336477732|ref|YP_004616873.1| - 0.13 12.4 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family PadR PF03551.14 gi|336477732|ref|YP_004616873.1| - 0.15 12.1 0.0 0.38 10.7 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF166 PF02593.14 gi|336477733|ref|YP_004616874.1| - 5.5e-72 241.9 0.1 6.2e-72 241.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function tRNA-synt_2d PF01409.20 gi|336477734|ref|YP_004616875.1| - 1.5e-92 309.5 0.0 2e-92 309.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|336477734|ref|YP_004616875.1| - 8.3e-09 35.2 0.0 1.3e-05 24.8 0.0 2.4 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|336477734|ref|YP_004616875.1| - 0.00064 18.9 0.5 0.033 13.3 0.1 3.2 4 0 0 4 4 4 1 tRNA synthetases class II (D, K and N) HTH_45 PF14947.6 gi|336477734|ref|YP_004616875.1| - 0.012 15.6 1.6 0.27 11.3 0.2 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix TrmB PF01978.19 gi|336477734|ref|YP_004616875.1| - 0.016 15.0 0.2 0.11 12.4 0.1 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336477734|ref|YP_004616875.1| - 0.033 14.1 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 MarR family Rio2_N PF09202.11 gi|336477734|ref|YP_004616875.1| - 0.099 12.9 0.1 1.4 9.1 0.0 2.3 2 0 0 2 2 2 0 Rio2, N-terminal tRNA-synt_1b PF00579.25 gi|336477735|ref|YP_004616876.1| - 3e-39 135.1 0.0 6.8e-21 74.9 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Radical_SAM PF04055.21 gi|336477736|ref|YP_004616877.1| - 4.4e-13 50.0 0.1 7e-13 49.3 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|336477736|ref|YP_004616877.1| - 1.2e-09 38.5 0.2 3.7e-09 36.9 0.2 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|336477736|ref|YP_004616877.1| - 0.0084 16.4 0.0 0.024 14.9 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|336477736|ref|YP_004616877.1| - 0.14 12.3 0.8 0.41 10.8 0.8 1.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain IDEAL PF08858.10 gi|336477736|ref|YP_004616877.1| - 0.18 11.6 0.6 0.41 10.4 0.6 1.6 1 0 0 1 1 1 0 IDEAL domain ATPase PF06745.13 gi|336477737|ref|YP_004616878.1| - 2.2e-67 226.8 0.1 2.6e-67 226.5 0.1 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|336477737|ref|YP_004616878.1| - 3.7e-09 35.7 0.0 5.5e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|336477737|ref|YP_004616878.1| - 3.2e-07 30.1 0.0 5e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|336477737|ref|YP_004616878.1| - 8.2e-07 28.6 0.0 1.6e-06 27.6 0.0 1.5 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|336477737|ref|YP_004616878.1| - 0.00013 22.3 0.0 0.00044 20.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|336477737|ref|YP_004616878.1| - 0.0039 17.8 0.2 0.011 16.3 0.2 1.8 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|336477737|ref|YP_004616878.1| - 0.015 14.5 0.2 0.03 13.6 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|336477737|ref|YP_004616878.1| - 0.019 15.0 0.1 1.8 8.6 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|336477737|ref|YP_004616878.1| - 0.093 12.9 0.0 0.12 12.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|336477737|ref|YP_004616878.1| - 0.1 12.3 0.4 0.56 9.9 0.4 2.1 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|336477737|ref|YP_004616878.1| - 0.17 11.6 0.1 0.48 10.1 0.1 1.8 1 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.6 gi|336477737|ref|YP_004616878.1| - 0.18 11.6 0.0 0.34 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain eIF-5_eIF-2B PF01873.17 gi|336477738|ref|YP_004616879.1| - 1.3e-37 128.3 0.0 1.9e-37 127.7 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|336477738|ref|YP_004616879.1| - 1.3e-11 44.3 1.2 2.8e-11 43.3 1.2 1.5 1 0 0 1 1 1 1 TRAM domain AsnC_trans_reg PF01037.21 gi|336477738|ref|YP_004616879.1| - 0.023 14.6 0.0 0.77 9.8 0.0 2.4 2 0 0 2 2 2 0 Lrp/AsnC ligand binding domain EcsC PF12787.7 gi|336477738|ref|YP_004616879.1| - 0.082 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 EcsC protein family zf_C2H2_13 PF18508.1 gi|336477738|ref|YP_004616879.1| - 0.12 11.9 1.3 0.19 11.4 0.1 1.9 2 0 0 2 2 2 0 Zinc finger domain Lar_restr_allev PF14354.6 gi|336477738|ref|YP_004616879.1| - 0.23 11.8 1.9 12 6.4 1.9 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-RanBP PF00641.18 gi|336477738|ref|YP_004616879.1| - 0.32 10.3 0.1 0.32 10.3 0.1 1.8 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others ZF-HD_dimer PF04770.12 gi|336477738|ref|YP_004616879.1| - 0.36 11.2 1.9 1.2 9.5 2.3 1.7 1 1 1 2 2 2 0 ZF-HD protein dimerisation region Ribosomal_L16 PF00252.18 gi|336477739|ref|YP_004616880.1| - 1.1e-33 116.0 0.5 1.3e-33 115.8 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF1786 PF08735.10 gi|336477740|ref|YP_004616881.1| - 3e-90 301.9 0.0 3.6e-90 301.6 0.0 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) FtsA PF14450.6 gi|336477740|ref|YP_004616881.1| - 0.15 12.5 0.1 8.7 6.8 0.0 2.5 2 0 0 2 2 2 0 Cell division protein FtsA MoCF_biosynth PF00994.24 gi|336477741|ref|YP_004616882.1| - 7.8e-35 119.6 0.1 9.1e-35 119.4 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Peripla_BP_6 PF13458.6 gi|336477741|ref|YP_004616882.1| - 0.14 11.8 0.0 0.18 11.4 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein ATPase PF06745.13 gi|336477742|ref|YP_004616883.1| - 9.7e-08 31.6 0.8 3.2e-07 29.9 0.8 1.7 1 1 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|336477742|ref|YP_004616883.1| - 4.9e-06 25.9 0.1 7.2e-06 25.4 0.0 1.3 2 0 0 2 2 2 1 PAXNEB protein DUF835 PF05763.12 gi|336477742|ref|YP_004616883.1| - 0.0047 16.7 0.0 0.0078 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) CRS1_YhbY PF01985.21 gi|336477743|ref|YP_004616884.1| - 8.7e-20 70.7 1.4 9.6e-20 70.6 1.4 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain IF-2 PF11987.8 gi|336477743|ref|YP_004616884.1| - 0.0019 18.3 0.4 0.0022 18.1 0.4 1.2 1 0 0 1 1 1 1 Translation-initiation factor 2 DUF3670 PF12419.8 gi|336477743|ref|YP_004616884.1| - 0.041 13.7 0.0 0.041 13.7 0.0 1.2 1 0 0 1 1 1 0 SNF2 Helicase protein DUF190 PF02641.15 gi|336477744|ref|YP_004616885.1| - 4.4e-32 110.3 0.2 4.9e-32 110.1 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CRCB PF02537.15 gi|336477745|ref|YP_004616886.1| - 4e-20 71.9 7.2 4.9e-20 71.6 7.2 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) YrhK PF14145.6 gi|336477745|ref|YP_004616886.1| - 0.065 13.1 4.6 0.1 12.5 0.2 2.4 1 1 0 2 2 2 0 YrhK-like protein CRCB PF02537.15 gi|336477746|ref|YP_004616887.1| - 3.5e-17 62.5 11.7 4.1e-17 62.3 11.7 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) MoeA_N PF03453.17 gi|336477747|ref|YP_004616888.1| - 2.6e-41 141.0 0.0 4.5e-41 140.2 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|336477747|ref|YP_004616888.1| - 6.1e-23 81.1 0.0 9.3e-23 80.5 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|336477747|ref|YP_004616888.1| - 2.1e-14 53.4 0.2 1.2e-13 51.0 0.1 2.3 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) MutL PF13941.6 gi|336477747|ref|YP_004616888.1| - 0.022 13.4 0.1 0.032 12.8 0.1 1.1 1 0 0 1 1 1 0 MutL protein PUA PF01472.20 gi|336477747|ref|YP_004616888.1| - 0.07 13.1 0.3 9.5 6.3 0.0 3.0 3 0 0 3 3 3 0 PUA domain ThiS PF02597.20 gi|336477748|ref|YP_004616889.1| - 3.4e-18 66.1 0.1 4e-18 65.8 0.1 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|336477748|ref|YP_004616889.1| - 0.011 16.0 0.0 0.012 15.9 0.0 1.1 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) DUF4150 PF13665.6 gi|336477748|ref|YP_004616889.1| - 0.13 12.4 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4150) Lambda_tail_I PF06805.12 gi|336477748|ref|YP_004616889.1| - 0.14 12.6 0.0 0.15 12.4 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I ABC2_membrane PF01061.24 gi|336477749|ref|YP_004616890.1| - 1.5e-38 132.3 19.6 1.5e-38 132.3 19.6 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|336477749|ref|YP_004616890.1| - 4.3e-11 42.5 28.0 4.3e-11 42.5 28.0 1.4 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|336477749|ref|YP_004616890.1| - 0.00051 20.1 7.2 0.00051 20.1 7.2 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein Flavoprotein PF02441.19 gi|336477750|ref|YP_004616891.1| - 2.4e-26 92.4 0.2 3e-26 92.1 0.2 1.1 1 0 0 1 1 1 1 Flavoprotein Phage_head_chap PF11113.8 gi|336477751|ref|YP_004616892.1| - 0.023 14.8 1.6 0.025 14.7 0.3 1.8 3 0 0 3 3 3 0 Head assembly gene product HD PF01966.22 gi|336477752|ref|YP_004616893.1| - 7.6e-13 48.8 4.2 9.8e-13 48.4 1.9 2.3 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|336477752|ref|YP_004616893.1| - 0.0086 15.6 0.0 0.019 14.5 0.0 1.6 1 0 0 1 1 1 1 HDOD domain DUF2482 PF10655.9 gi|336477752|ref|YP_004616893.1| - 0.018 15.5 0.0 0.046 14.2 0.0 1.7 1 0 0 1 1 1 0 Hypothetical protein of unknown function (DUF2482) UPF0052 PF01933.18 gi|336477753|ref|YP_004616894.1| - 2.8e-51 174.5 0.1 3.3e-51 174.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 DUF2525 PF10733.9 gi|336477753|ref|YP_004616894.1| - 0.015 15.5 0.0 3.3 8.0 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2525) Pribosyltran PF00156.27 gi|336477754|ref|YP_004616895.1| - 1.9e-16 60.0 2.0 2.4e-16 59.7 2.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|336477754|ref|YP_004616895.1| - 0.00018 21.0 0.1 0.00026 20.5 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|336477754|ref|YP_004616895.1| - 0.0057 16.2 0.1 0.0076 15.8 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Diphthamide_syn PF01866.17 gi|336477755|ref|YP_004616896.1| - 2.8e-84 283.1 0.0 3.5e-84 282.8 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Inhibitor_I78 PF11720.8 gi|336477755|ref|YP_004616896.1| - 0.079 13.0 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 Peptidase inhibitor I78 family MTS PF05175.14 gi|336477756|ref|YP_004616897.1| - 2e-16 60.0 0.0 2.9e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|336477756|ref|YP_004616897.1| - 1.9e-13 50.5 0.1 2.6e-13 50.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|336477756|ref|YP_004616897.1| - 3.1e-10 40.6 0.0 8.7e-10 39.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336477756|ref|YP_004616897.1| - 4.9e-10 39.4 0.3 9.4e-10 38.5 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|336477756|ref|YP_004616897.1| - 6.4e-06 26.0 0.2 5.9e-05 22.8 0.2 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|336477756|ref|YP_004616897.1| - 6.9e-06 26.6 0.1 1.8e-05 25.3 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336477756|ref|YP_004616897.1| - 3.8e-05 23.6 0.0 5.1e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|336477756|ref|YP_004616897.1| - 8.2e-05 21.9 0.0 0.00011 21.5 0.0 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Cons_hypoth95 PF03602.15 gi|336477756|ref|YP_004616897.1| - 0.00014 21.6 0.0 0.00021 21.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|336477756|ref|YP_004616897.1| - 0.0061 17.3 0.1 0.011 16.5 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|336477756|ref|YP_004616897.1| - 0.0096 15.4 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB N6_Mtase PF02384.16 gi|336477756|ref|YP_004616897.1| - 0.011 15.0 0.0 0.026 13.8 0.0 1.5 1 1 0 1 1 1 0 N-6 DNA Methylase Methyltransf_32 PF13679.6 gi|336477756|ref|YP_004616897.1| - 0.012 15.6 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain AviRa PF11599.8 gi|336477756|ref|YP_004616897.1| - 0.038 13.5 0.0 0.065 12.7 0.0 1.4 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Methyltransf_15 PF09445.10 gi|336477756|ref|YP_004616897.1| - 0.062 12.9 0.1 0.09 12.4 0.1 1.3 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|336477756|ref|YP_004616897.1| - 0.11 12.4 0.2 0.17 11.8 0.2 1.3 1 0 0 1 1 1 0 Methyltransferase domain T2SSS_2 PF16549.5 gi|336477756|ref|YP_004616897.1| - 0.14 12.2 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS) pilotin, S protein ECR1_N PF14382.6 gi|336477757|ref|YP_004616898.1| - 8e-09 35.2 0.1 1.7e-08 34.1 0.1 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|336477757|ref|YP_004616898.1| - 0.00038 21.0 2.8 0.0034 18.0 2.8 2.3 1 1 0 1 1 1 1 Exosome component EXOSC1/CSL4 S1 PF00575.23 gi|336477757|ref|YP_004616898.1| - 0.0037 17.6 9.4 0.0086 16.4 5.3 2.8 2 1 0 2 2 2 1 S1 RNA binding domain Prok-RING_1 PF14446.6 gi|336477757|ref|YP_004616898.1| - 0.0068 16.3 0.6 0.016 15.1 0.6 1.6 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Zn_Tnp_IS91 PF14319.6 gi|336477757|ref|YP_004616898.1| - 0.0087 16.1 0.1 0.013 15.5 0.1 1.2 1 0 0 1 1 1 1 Transposase zinc-binding domain HypA PF01155.19 gi|336477757|ref|YP_004616898.1| - 0.034 14.1 0.1 0.058 13.4 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Mu-like_Com PF10122.9 gi|336477757|ref|YP_004616898.1| - 0.04 13.4 1.5 0.09 12.2 1.5 1.6 1 0 0 1 1 1 0 Mu-like prophage protein Com Zn_ribbon_SprT PF17283.2 gi|336477757|ref|YP_004616898.1| - 0.062 13.2 0.5 12 5.9 0.0 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|336477757|ref|YP_004616898.1| - 0.076 13.0 1.3 0.16 11.9 1.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|336477757|ref|YP_004616898.1| - 0.1 12.8 2.2 0.16 12.2 2.2 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|336477757|ref|YP_004616898.1| - 0.6 10.3 2.8 1.7 8.8 2.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_7 PF02591.15 gi|336477757|ref|YP_004616898.1| - 1.4 9.2 4.0 0.41 10.9 0.5 2.0 1 1 0 1 1 1 0 C4-type zinc ribbon domain RNA_pol_L_2 PF13656.6 gi|336477758|ref|YP_004616899.1| - 6e-21 74.0 0.1 7.3e-21 73.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|336477758|ref|YP_004616899.1| - 5.3e-08 32.2 0.0 8.1e-08 31.6 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain SepSecS PF05889.13 gi|336477759|ref|YP_004616900.1| - 1.1e-51 175.8 0.0 1.4e-51 175.4 0.0 1.1 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|336477759|ref|YP_004616900.1| - 1.5e-14 53.7 0.0 2.1e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|336477759|ref|YP_004616900.1| - 3.2e-10 39.7 0.0 4.1e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II HSL_N PF06350.12 gi|336477759|ref|YP_004616900.1| - 0.038 13.0 0.0 0.52 9.2 0.0 2.5 3 0 0 3 3 3 0 Hormone-sensitive lipase (HSL) N-terminus Pyridoxal_deC PF00282.19 gi|336477759|ref|YP_004616900.1| - 0.11 11.2 0.0 0.51 9.0 0.0 1.8 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain OKR_DC_1 PF01276.20 gi|336477759|ref|YP_004616900.1| - 0.19 10.4 0.0 0.47 9.1 0.0 1.5 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain E1-E2_ATPase PF00122.20 gi|336477760|ref|YP_004616901.1| - 2.2e-49 167.4 16.1 2.7e-48 163.9 1.7 3.9 4 0 0 4 4 4 2 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|336477760|ref|YP_004616901.1| - 2.4e-47 161.0 1.0 2.4e-47 161.0 1.0 2.9 3 1 1 4 4 4 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|336477760|ref|YP_004616901.1| - 9.8e-22 78.3 0.2 2.5e-21 76.9 0.2 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|336477760|ref|YP_004616901.1| - 5.6e-19 68.0 0.0 1.2e-18 67.0 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|336477760|ref|YP_004616901.1| - 2.4e-17 62.4 0.4 7.7e-17 60.7 0.0 2.1 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|336477760|ref|YP_004616901.1| - 1.1e-10 41.7 2.7 4.1e-07 30.0 2.2 2.7 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336477760|ref|YP_004616901.1| - 0.023 15.1 0.0 0.053 13.9 0.0 1.7 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF1772 PF08592.11 gi|336477760|ref|YP_004616901.1| - 0.027 14.8 0.3 0.15 12.4 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1772) DUF2207 PF09972.9 gi|336477760|ref|YP_004616901.1| - 0.99 8.1 0.0 0.99 8.1 0.0 3.4 3 1 1 4 4 4 0 Predicted membrane protein (DUF2207) SPC12 PF06645.13 gi|336477760|ref|YP_004616901.1| - 8.2 6.6 16.2 0.41 10.8 5.7 3.1 3 0 0 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Ammonium_transp PF00909.21 gi|336477761|ref|YP_004616902.1| - 3.1e-116 388.4 39.4 3.7e-116 388.1 39.4 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family XhlA PF10779.9 gi|336477761|ref|YP_004616902.1| - 0.31 11.3 0.1 0.31 11.3 0.1 2.2 2 0 0 2 2 2 0 Haemolysin XhlA P-II PF00543.22 gi|336477762|ref|YP_004616903.1| - 4.9e-39 133.0 1.3 5.5e-39 132.9 1.3 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II LUC7 PF03194.15 gi|336477763|ref|YP_004616904.1| - 8e-05 22.4 0.4 0.00013 21.8 0.4 1.3 1 0 0 1 1 1 1 LUC7 N_terminus VASP_tetra PF08776.11 gi|336477763|ref|YP_004616904.1| - 0.0052 16.3 0.9 0.58 9.8 0.3 3.2 2 0 0 2 2 2 1 VASP tetramerisation domain FtsX_ECD PF18075.1 gi|336477763|ref|YP_004616904.1| - 0.39 11.4 4.8 7.4 7.3 0.1 3.7 3 1 0 3 3 3 0 FtsX extracellular domain BAR PF03114.18 gi|336477763|ref|YP_004616904.1| - 1.1 8.8 5.5 0.39 10.3 0.1 2.3 2 1 1 3 3 3 0 BAR domain DUF1640 PF07798.11 gi|336477763|ref|YP_004616904.1| - 1.7 8.7 7.6 2.4 8.2 1.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) Syntaxin-6_N PF09177.11 gi|336477763|ref|YP_004616904.1| - 4 8.1 9.9 49 4.6 4.2 3.6 2 1 0 3 3 3 0 Syntaxin 6, N-terminal tRNA-synt_1b PF00579.25 gi|336477764|ref|YP_004616905.1| - 1.3e-57 195.4 0.0 1.6e-57 195.1 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) ThiP_synth PF10120.9 gi|336477765|ref|YP_004616906.1| - 2.2e-52 177.0 0.0 2.5e-52 176.8 0.0 1.0 1 0 0 1 1 1 1 Thiamine-phosphate synthase AIRS_C PF02769.22 gi|336477766|ref|YP_004616907.1| - 1.3e-25 90.3 1.3 1.9e-25 89.8 1.3 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|336477766|ref|YP_004616907.1| - 5.7e-13 49.3 0.6 1.3e-12 48.2 0.1 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain SAICAR_synt PF01259.18 gi|336477767|ref|YP_004616908.1| - 2.2e-59 201.1 2.1 2.6e-59 200.9 2.1 1.0 1 0 0 1 1 1 1 SAICAR synthetase NAD_binding_8 PF13450.6 gi|336477768|ref|YP_004616909.1| - 9.7e-18 64.2 0.1 1.9e-17 63.2 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|336477768|ref|YP_004616909.1| - 2.4e-17 63.4 0.0 6.1e-17 62.1 0.0 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 gi|336477768|ref|YP_004616909.1| - 1.7e-12 47.2 0.8 4.4e-08 32.6 0.4 2.8 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|336477768|ref|YP_004616909.1| - 1.9e-08 33.9 0.0 9.9e-07 28.3 0.0 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336477768|ref|YP_004616909.1| - 2.5e-08 33.1 0.5 3.7e-07 29.2 0.1 2.3 2 1 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|336477768|ref|YP_004616909.1| - 6e-08 32.6 0.5 2.8e-07 30.4 0.3 2.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|336477768|ref|YP_004616909.1| - 4.8e-07 29.2 0.3 9.1e-07 28.3 0.3 1.4 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|336477768|ref|YP_004616909.1| - 1.3e-06 28.1 0.1 4.5e-06 26.3 0.0 1.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|336477768|ref|YP_004616909.1| - 1.3e-06 27.9 0.4 8.7e-05 21.9 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|336477768|ref|YP_004616909.1| - 3.7e-05 23.1 0.6 6.9e-05 22.3 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|336477768|ref|YP_004616909.1| - 0.0001 22.8 0.8 0.0019 18.7 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|336477768|ref|YP_004616909.1| - 0.00033 19.8 1.9 0.0012 18.0 0.6 2.4 2 1 0 2 2 2 1 Glucose inhibited division protein A GDI PF00996.18 gi|336477768|ref|YP_004616909.1| - 0.00064 18.4 0.4 0.0039 15.8 0.3 2.2 2 0 0 2 2 2 1 GDP dissociation inhibitor GMC_oxred_N PF00732.19 gi|336477768|ref|YP_004616909.1| - 0.0045 16.4 0.1 0.27 10.6 0.0 2.2 2 0 0 2 2 2 1 GMC oxidoreductase Lycopene_cycl PF05834.12 gi|336477768|ref|YP_004616909.1| - 0.0083 15.2 0.2 0.027 13.5 0.1 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|336477768|ref|YP_004616909.1| - 0.12 11.7 0.0 0.23 10.7 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|336477768|ref|YP_004616909.1| - 0.13 11.9 0.2 0.23 11.1 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Nre_N PF04894.12 gi|336477769|ref|YP_004616910.1| - 1.7e-104 349.5 0.0 2.1e-104 349.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|336477769|ref|YP_004616910.1| - 3.4e-39 133.2 0.0 5.2e-39 132.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal HTH_3 PF01381.22 gi|336477770|ref|YP_004616911.1| - 0.0002 21.3 0.1 0.0006 19.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_24 PF13412.6 gi|336477770|ref|YP_004616911.1| - 0.00058 19.4 0.1 0.0019 17.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|336477770|ref|YP_004616911.1| - 0.00083 18.8 0.2 0.0055 16.2 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_8 PF02954.19 gi|336477770|ref|YP_004616911.1| - 0.011 15.5 0.0 0.023 14.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_Crp_2 PF13545.6 gi|336477770|ref|YP_004616911.1| - 0.012 15.6 0.0 0.028 14.4 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|336477770|ref|YP_004616911.1| - 0.014 15.3 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT KORA PF16509.5 gi|336477770|ref|YP_004616911.1| - 0.02 15.2 0.1 0.18 12.1 0.0 2.1 1 1 1 2 2 2 0 TrfB plasmid transcriptional repressor P22_Cro PF14549.6 gi|336477770|ref|YP_004616911.1| - 0.022 14.6 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_17 PF12728.7 gi|336477770|ref|YP_004616911.1| - 0.091 13.0 0.0 0.53 10.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|336477770|ref|YP_004616911.1| - 0.12 12.0 0.3 0.46 10.2 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Cro PF09048.10 gi|336477770|ref|YP_004616911.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Cro NifU_N PF01592.16 gi|336477771|ref|YP_004616912.1| - 9.5e-53 177.7 0.3 1e-52 177.6 0.3 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain TSCPD PF12637.7 gi|336477771|ref|YP_004616912.1| - 0.028 14.7 0.2 0.042 14.1 0.2 1.5 1 1 0 1 1 1 0 TSCPD domain DUF448 PF04296.13 gi|336477771|ref|YP_004616912.1| - 0.036 13.9 0.0 0.056 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF448) DUF1858 PF08984.11 gi|336477771|ref|YP_004616912.1| - 0.056 13.6 1.6 1.1 9.5 1.0 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF1858) TetR_C_28 PF17937.1 gi|336477771|ref|YP_004616912.1| - 0.17 12.4 0.0 0.22 12.0 0.0 1.1 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Aminotran_5 PF00266.19 gi|336477772|ref|YP_004616913.1| - 1.1e-92 310.9 0.0 1.3e-92 310.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|336477772|ref|YP_004616913.1| - 3e-08 33.3 0.0 3.9e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|336477772|ref|YP_004616913.1| - 2.5e-06 27.0 0.0 4.6e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|336477772|ref|YP_004616913.1| - 0.0033 16.0 0.0 0.0051 15.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme EutN_CcmL PF03319.13 gi|336477772|ref|YP_004616913.1| - 0.12 13.0 0.0 0.35 11.5 0.0 1.8 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutN/carboxysome SUI1 PF01253.22 gi|336477773|ref|YP_004616914.1| - 2.1e-20 73.0 0.2 2.8e-20 72.6 0.2 1.2 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|336477773|ref|YP_004616914.1| - 0.015 15.0 0.2 0.017 14.9 0.2 1.2 1 0 0 1 1 1 0 DTW domain Img2 PF05046.14 gi|336477773|ref|YP_004616914.1| - 0.035 14.4 0.3 0.1 12.9 0.3 1.8 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DUF192 PF02643.15 gi|336477774|ref|YP_004616915.1| - 2.5e-26 91.6 0.0 2.9e-26 91.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 AIRS_C PF02769.22 gi|336477775|ref|YP_004616916.1| - 1.1e-48 165.3 1.4 6.9e-30 104.2 0.2 2.2 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|336477775|ref|YP_004616916.1| - 3.6e-44 149.3 1.8 2.6e-23 82.5 0.1 3.1 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|336477775|ref|YP_004616916.1| - 2.9e-07 30.9 0.1 9.4e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain TRAM PF01938.20 gi|336477776|ref|YP_004616917.1| - 1.3e-16 60.3 1.9 1.4e-16 60.2 1.9 1.0 1 0 0 1 1 1 1 TRAM domain Pribosyltran PF00156.27 gi|336477777|ref|YP_004616918.1| - 6.9e-25 87.4 0.0 1.5e-24 86.3 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|336477777|ref|YP_004616918.1| - 0.00076 19.0 0.1 0.0014 18.1 0.0 1.5 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|336477777|ref|YP_004616918.1| - 0.0022 17.5 0.0 0.0031 17.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Unstab_antitox PF09720.10 gi|336477777|ref|YP_004616918.1| - 0.12 12.4 0.1 0.25 11.4 0.1 1.5 1 0 0 1 1 1 0 Putative addiction module component Cupin_2 PF07883.11 gi|336477778|ref|YP_004616919.1| - 6e-12 45.1 0.0 7.8e-12 44.7 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|336477778|ref|YP_004616919.1| - 1.1e-05 25.4 0.0 1.5e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Ectoine_synth PF06339.12 gi|336477778|ref|YP_004616919.1| - 0.0014 18.8 0.0 0.0016 18.6 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_1 PF00190.22 gi|336477778|ref|YP_004616919.1| - 0.0047 16.5 0.0 0.0062 16.2 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.7 gi|336477778|ref|YP_004616919.1| - 0.012 15.5 0.0 0.014 15.3 0.0 1.1 1 0 0 1 1 1 0 ChrR Cupin-like domain DUF4437 PF14499.6 gi|336477778|ref|YP_004616919.1| - 0.03 13.4 0.0 0.033 13.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4437) ARD PF03079.14 gi|336477778|ref|YP_004616919.1| - 0.036 14.2 0.0 0.036 14.2 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family Cupin_3 PF05899.12 gi|336477778|ref|YP_004616919.1| - 0.1 12.3 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_4 PF08007.12 gi|336477778|ref|YP_004616919.1| - 0.18 11.2 0.0 0.21 11.0 0.0 1.1 1 0 0 1 1 1 0 Cupin superfamily protein F_bP_aldolase PF01116.20 gi|336477779|ref|YP_004616920.1| - 1e-31 110.5 0.0 1.3e-31 110.2 0.0 1.1 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II Tagatose_6_P_K PF08013.11 gi|336477779|ref|YP_004616920.1| - 6.2e-10 38.3 0.0 9e-10 37.8 0.0 1.2 1 0 0 1 1 1 1 Tagatose 6 phosphate kinase ACT PF01842.25 gi|336477779|ref|YP_004616920.1| - 0.13 12.0 0.1 0.39 10.5 0.1 1.8 1 0 0 1 1 1 0 ACT domain Peptidase_S49 PF01343.18 gi|336477780|ref|YP_004616921.1| - 1e-42 145.7 0.0 1.4e-42 145.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|336477780|ref|YP_004616921.1| - 6.1e-05 23.0 1.8 0.00024 21.1 0.4 2.1 2 0 0 2 2 2 1 Clp protease Asparaginase_C PF17763.1 gi|336477780|ref|YP_004616921.1| - 0.00059 20.0 0.0 0.0015 18.8 0.0 1.7 1 0 0 1 1 1 1 Glutaminase/Asparaginase C-terminal domain Phage_holin_5_2 PF16079.5 gi|336477780|ref|YP_004616921.1| - 0.12 12.7 2.1 3.1 8.2 0.0 2.4 2 0 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V tRNA-synt_1g PF09334.11 gi|336477781|ref|YP_004616922.1| - 1.7e-152 507.8 0.2 3.3e-152 506.8 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|336477781|ref|YP_004616922.1| - 1.2e-26 92.6 0.2 3e-26 91.3 0.2 1.7 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|336477781|ref|YP_004616922.1| - 1.1e-16 60.3 0.3 8.9e-09 34.1 0.0 3.8 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|336477781|ref|YP_004616922.1| - 6.4e-14 52.2 1.3 1.1e-13 51.4 1.3 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|336477781|ref|YP_004616922.1| - 1.3e-13 51.0 0.2 7.9e-09 35.3 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|336477781|ref|YP_004616922.1| - 0.00013 21.0 0.3 0.15 10.9 0.0 3.2 4 0 0 4 4 4 2 tRNA synthetases class I (K) zf-RING_7 PF02591.15 gi|336477781|ref|YP_004616922.1| - 0.013 15.7 3.7 0.037 14.2 0.1 2.9 2 0 0 2 2 2 0 C4-type zinc ribbon domain T4_baseplate PF12322.8 gi|336477781|ref|YP_004616922.1| - 0.043 13.3 0.2 0.16 11.5 0.0 2.1 2 0 0 2 2 2 0 T4 bacteriophage base plate protein DZR PF12773.7 gi|336477781|ref|YP_004616922.1| - 0.047 13.7 6.6 0.29 11.2 6.6 2.2 1 1 0 1 1 1 0 Double zinc ribbon TackOD1 PF18551.1 gi|336477781|ref|YP_004616922.1| - 0.071 12.8 0.3 0.13 11.9 0.3 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zinc_ribbon_2 PF13240.6 gi|336477781|ref|YP_004616922.1| - 0.12 12.1 9.6 0.064 13.0 2.7 2.8 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|336477781|ref|YP_004616922.1| - 2.6 8.2 5.2 14 5.9 5.2 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-HIT PF04438.16 gi|336477781|ref|YP_004616922.1| - 2.8 7.9 4.2 3.3 7.7 0.0 2.6 2 1 0 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.6 gi|336477781|ref|YP_004616922.1| - 2.9 7.4 13.2 0.84 9.1 4.2 3.5 3 2 0 3 3 3 0 zinc-ribbon domain CYTH PF01928.21 gi|336477782|ref|YP_004616923.1| - 1.7e-36 125.8 0.0 2e-36 125.6 0.0 1.0 1 0 0 1 1 1 1 CYTH domain aGPT-Pplase1 PF18723.1 gi|336477782|ref|YP_004616923.1| - 0.09 12.2 0.0 0.094 12.1 0.0 1.1 1 0 0 1 1 1 0 alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 1 OB_aCoA_assoc PF01796.17 gi|336477783|ref|YP_004616924.1| - 1.2e-20 73.2 0.0 1.7e-20 72.8 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|336477783|ref|YP_004616924.1| - 1e-10 41.2 0.4 1.5e-10 40.7 0.4 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.12 gi|336477783|ref|YP_004616924.1| - 0.026 14.4 0.1 0.032 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Thiolase_N PF00108.23 gi|336477784|ref|YP_004616925.1| - 5.9e-23 81.6 1.1 1.4e-22 80.3 1.1 1.7 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|336477784|ref|YP_004616925.1| - 2.8e-12 46.4 0.9 2e-11 43.6 0.9 2.4 1 1 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|336477784|ref|YP_004616925.1| - 8.6e-07 28.8 6.1 1.6e-05 24.6 6.1 2.3 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|336477784|ref|YP_004616925.1| - 0.0026 17.8 1.4 0.075 13.1 0.0 2.9 2 1 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III_C PF08541.10 gi|336477785|ref|YP_004616926.1| - 4.9e-10 39.4 0.0 1.2e-09 38.2 0.0 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|336477785|ref|YP_004616926.1| - 2.2e-06 27.5 0.0 4.3e-05 23.3 0.0 1.9 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|336477785|ref|YP_004616926.1| - 4.5e-05 23.4 0.2 6.1e-05 22.9 0.2 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.23 gi|336477785|ref|YP_004616926.1| - 6.9e-05 22.3 0.4 0.00012 21.5 0.4 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Phosphatase PF15698.5 gi|336477785|ref|YP_004616926.1| - 0.093 11.9 0.2 0.14 11.3 0.2 1.2 1 0 0 1 1 1 0 Phosphatase ACP_syn_III PF08545.10 gi|336477785|ref|YP_004616926.1| - 9.3 6.2 10.7 0.67 9.8 2.1 2.6 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_3 PF01381.22 gi|336477786|ref|YP_004616927.1| - 2.1e-08 34.1 0.0 6.6e-08 32.5 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|336477786|ref|YP_004616927.1| - 4.6e-05 23.4 0.1 0.00019 21.4 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|336477786|ref|YP_004616927.1| - 0.0026 18.1 0.0 0.0068 16.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|336477786|ref|YP_004616927.1| - 0.053 13.6 0.0 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Cas_Cas4 PF01930.17 gi|336477787|ref|YP_004616928.1| - 3.9e-09 36.8 0.1 8.6e-06 25.9 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|336477787|ref|YP_004616928.1| - 0.039 13.9 0.5 0.24 11.3 0.5 1.9 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF1284 PF06935.11 gi|336477787|ref|YP_004616928.1| - 0.053 14.0 3.1 0.12 12.8 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1284) PAPS_reduct PF01507.19 gi|336477788|ref|YP_004616929.1| - 9e-46 156.1 0.0 1.7e-45 155.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|336477788|ref|YP_004616929.1| - 3.3e-22 78.2 0.2 9.2e-22 76.8 0.2 1.8 1 0 0 1 1 1 1 PUA domain Fer4_7 PF12838.7 gi|336477788|ref|YP_004616929.1| - 0.00017 22.1 11.5 0.00017 22.1 11.5 2.8 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336477788|ref|YP_004616929.1| - 0.00038 20.5 11.6 0.00038 20.5 11.6 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336477788|ref|YP_004616929.1| - 0.00051 20.2 13.0 0.00051 20.2 13.0 3.1 4 1 0 4 4 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336477788|ref|YP_004616929.1| - 0.00096 18.9 24.4 0.0058 16.4 3.6 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336477788|ref|YP_004616929.1| - 0.0015 18.6 11.6 0.0015 18.6 11.6 2.8 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336477788|ref|YP_004616929.1| - 0.0088 16.1 2.3 0.0088 16.1 2.3 3.9 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336477788|ref|YP_004616929.1| - 0.0099 15.9 18.7 0.01 15.8 2.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336477788|ref|YP_004616929.1| - 0.017 15.3 4.8 0.053 13.7 4.8 1.8 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336477788|ref|YP_004616929.1| - 0.025 15.1 13.2 0.39 11.3 1.5 3.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Init_tRNA_PT PF04179.12 gi|336477788|ref|YP_004616929.1| - 0.029 14.7 0.0 0.062 13.6 0.0 1.5 1 0 0 1 1 1 0 Rit1 DUSP-like domain Fer4_16 PF13484.6 gi|336477788|ref|YP_004616929.1| - 0.049 14.6 2.4 0.049 14.6 2.4 3.5 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain UPF0113 PF03657.13 gi|336477788|ref|YP_004616929.1| - 0.1 12.9 0.0 0.29 11.4 0.0 1.7 1 0 0 1 1 1 0 UPF0113 PUA domain AICARFT_IMPCHas PF01808.18 gi|336477789|ref|YP_004616930.1| - 2.8e-99 332.3 0.0 3.9e-99 331.8 0.0 1.2 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 gi|336477789|ref|YP_004616930.1| - 2.1e-26 91.9 0.2 4.2e-26 91.0 0.2 1.5 1 0 0 1 1 1 1 MGS-like domain NSP2_assoc PF14758.6 gi|336477789|ref|YP_004616930.1| - 0.14 12.5 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 Non-essential region of nsp2 of arterivirus polyprotein iPGM_N PF06415.13 gi|336477790|ref|YP_004616931.1| - 9.6e-88 293.2 0.7 1.3e-87 292.8 0.7 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|336477790|ref|YP_004616931.1| - 4.8e-82 275.0 0.1 5.5e-82 274.9 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|336477790|ref|YP_004616931.1| - 0.00062 19.5 0.1 0.0046 16.6 0.0 2.2 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|336477790|ref|YP_004616931.1| - 0.0025 17.3 0.0 0.028 13.8 0.0 2.4 3 0 0 3 3 3 1 Sulfatase PglZ PF08665.12 gi|336477790|ref|YP_004616931.1| - 0.0034 17.5 0.2 0.0068 16.5 0.2 1.4 1 0 0 1 1 1 1 PglZ domain AP_endonuc_2 PF01261.24 gi|336477790|ref|YP_004616931.1| - 0.039 13.4 0.2 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel XPG_I PF00867.18 gi|336477791|ref|YP_004616932.1| - 2.3e-26 92.0 0.0 4.8e-26 90.9 0.0 1.6 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|336477791|ref|YP_004616932.1| - 5.5e-20 71.7 0.0 1e-19 70.9 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|336477791|ref|YP_004616932.1| - 0.0036 17.9 0.0 0.0072 16.9 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold TAL_effector PF03377.13 gi|336477791|ref|YP_004616932.1| - 0.15 12.4 0.1 24 5.4 0.0 3.0 3 0 0 3 3 3 0 TAL effector repeat DUF835 PF05763.12 gi|336477792|ref|YP_004616933.1| - 0.012 15.3 0.1 0.017 14.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF835) Hemocyanin_M PF00372.19 gi|336477792|ref|YP_004616933.1| - 0.092 11.9 0.3 0.14 11.3 0.3 1.5 1 1 0 1 1 1 0 Hemocyanin, copper containing domain TMEMspv1-c74-12 PF11044.8 gi|336477794|ref|YP_004616935.1| - 0.068 13.2 3.0 4.3 7.4 0.1 2.2 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Wzy_C PF04932.15 gi|336477794|ref|YP_004616935.1| - 0.083 12.5 0.0 0.089 12.4 0.0 1.1 1 0 0 1 1 1 0 O-Antigen ligase TMEM51 PF15345.6 gi|336477794|ref|YP_004616935.1| - 0.34 10.7 1.5 0.45 10.3 1.5 1.4 1 1 0 1 1 1 0 Transmembrane protein 51 ApoO PF09769.9 gi|336477794|ref|YP_004616935.1| - 0.8 9.7 2.9 3.8 7.5 0.1 2.1 1 1 1 2 2 2 0 Apolipoprotein O SPP PF06550.11 gi|336477795|ref|YP_004616936.1| - 7.7e-100 334.0 30.4 9.4e-100 333.7 30.4 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|336477795|ref|YP_004616936.1| - 2.3e-08 33.9 16.3 3.4e-08 33.4 16.3 1.3 1 0 0 1 1 1 1 Signal peptide peptidase CMD PF02627.20 gi|336477796|ref|YP_004616937.1| - 2e-13 50.2 0.1 3.5e-13 49.4 0.1 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family MCR_C PF04609.12 gi|336477797|ref|YP_004616938.1| - 2.7e-126 420.2 0.1 3.2e-126 419.9 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.9 gi|336477798|ref|YP_004616939.1| - 2.8e-65 219.2 0.8 3.1e-65 219.0 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) pKID PF02173.17 gi|336477798|ref|YP_004616939.1| - 0.089 12.3 0.1 0.21 11.1 0.1 1.7 1 0 0 1 1 1 0 pKID domain BcrAD_BadFG PF01869.20 gi|336477799|ref|YP_004616940.1| - 4.6e-55 187.0 3.2 6e-55 186.6 3.2 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_C PF02782.16 gi|336477799|ref|YP_004616940.1| - 0.00038 20.2 0.1 0.0015 18.3 0.1 1.9 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.6 gi|336477799|ref|YP_004616940.1| - 0.0034 17.8 0.6 0.025 15.0 0.6 2.4 1 1 0 1 1 1 1 Cell division protein FtsA FGGY_N PF00370.21 gi|336477799|ref|YP_004616940.1| - 0.06 12.9 2.4 1.1 8.7 0.4 2.5 2 1 0 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain Hydant_A_N PF05378.13 gi|336477799|ref|YP_004616940.1| - 0.11 12.1 3.4 0.053 13.2 0.8 1.8 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region DUF2112 PF09885.9 gi|336477800|ref|YP_004616941.1| - 5.1e-66 221.1 0.0 5.7e-66 220.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.9 gi|336477801|ref|YP_004616942.1| - 2.2e-42 142.9 0.0 2.9e-42 142.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) PASTA PF03793.19 gi|336477802|ref|YP_004616943.1| - 0.028 14.3 0.1 0.1 12.5 0.1 2.1 1 0 0 1 1 1 0 PASTA domain Fer2_4 PF13510.6 gi|336477802|ref|YP_004616943.1| - 0.036 14.1 0.0 0.081 13.0 0.0 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Alginate_lyase2 PF08787.11 gi|336477802|ref|YP_004616943.1| - 0.12 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Alginate lyase ABC_tran PF00005.27 gi|336477803|ref|YP_004616944.1| - 2.4e-51 173.9 0.1 3.5e-25 89.1 0.0 2.7 3 0 0 3 3 3 2 ABC transporter SMC_N PF02463.19 gi|336477803|ref|YP_004616944.1| - 1.6e-06 27.7 0.1 0.055 12.9 0.0 2.9 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|336477803|ref|YP_004616944.1| - 3.2e-05 23.9 0.6 0.26 11.2 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_18 PF13238.6 gi|336477803|ref|YP_004616944.1| - 0.00016 22.3 1.5 0.23 12.0 0.1 3.0 3 0 0 3 3 3 2 AAA domain PRK PF00485.18 gi|336477803|ref|YP_004616944.1| - 0.001 18.8 0.2 1.4 8.7 0.0 2.3 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family Zeta_toxin PF06414.12 gi|336477803|ref|YP_004616944.1| - 0.0022 17.3 0.2 0.061 12.6 0.1 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_30 PF13604.6 gi|336477803|ref|YP_004616944.1| - 0.003 17.3 1.6 1.4 8.6 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|336477803|ref|YP_004616944.1| - 0.0054 16.4 1.2 3.5 7.4 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain MobB PF03205.14 gi|336477803|ref|YP_004616944.1| - 0.0092 15.9 0.3 4.1 7.3 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.17 gi|336477803|ref|YP_004616944.1| - 0.012 15.3 2.1 1.5 8.5 0.0 3.3 4 0 0 4 4 4 0 IstB-like ATP binding protein ATP-synt_ab PF00006.25 gi|336477803|ref|YP_004616944.1| - 0.014 15.1 0.1 0.57 9.8 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain SbcCD_C PF13558.6 gi|336477803|ref|YP_004616944.1| - 0.018 15.3 0.0 22 5.4 0.0 3.5 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|336477803|ref|YP_004616944.1| - 0.021 15.1 1.5 6.5 7.0 0.0 3.3 4 0 0 4 4 3 0 AAA domain TsaE PF02367.17 gi|336477803|ref|YP_004616944.1| - 0.029 14.4 0.5 7.2 6.6 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_21 PF13304.6 gi|336477803|ref|YP_004616944.1| - 0.041 13.7 2.6 32 4.2 0.0 3.8 3 1 1 4 4 4 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_28 PF13521.6 gi|336477803|ref|YP_004616944.1| - 0.051 13.8 0.5 6.2 7.0 0.1 3.6 4 0 0 4 4 4 0 AAA domain AAA_33 PF13671.6 gi|336477803|ref|YP_004616944.1| - 0.053 13.7 0.2 3 8.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|336477803|ref|YP_004616944.1| - 0.067 12.5 1.7 4.6 6.5 0.1 2.7 2 0 0 2 2 2 0 KaiC ADK_lid PF05191.14 gi|336477803|ref|YP_004616944.1| - 0.079 13.0 0.8 0.17 11.9 0.8 1.5 1 0 0 1 1 1 0 Adenylate kinase, active site lid AAA_16 PF13191.6 gi|336477803|ref|YP_004616944.1| - 0.12 12.7 0.2 4.6 7.6 0.1 2.5 2 1 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.22 gi|336477803|ref|YP_004616944.1| - 0.26 10.4 3.3 1.6 7.8 0.2 2.6 2 1 0 2 2 2 0 NB-ARC domain DUF87 PF01935.17 gi|336477803|ref|YP_004616944.1| - 0.27 11.3 4.5 4 7.5 0.1 2.6 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|336477803|ref|YP_004616944.1| - 0.65 9.7 2.8 18 5.0 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|336477803|ref|YP_004616944.1| - 1.5 9.3 3.9 8.6 6.8 0.7 2.3 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|336477803|ref|YP_004616944.1| - 1.6 8.8 3.5 11 6.1 0.7 2.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA PF00004.29 gi|336477803|ref|YP_004616944.1| - 7.1 7.1 6.3 24 5.4 1.9 3.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Hydrolase PF00702.26 gi|336477804|ref|YP_004616945.1| - 1.8e-15 57.8 0.0 5.9e-15 56.1 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|336477804|ref|YP_004616945.1| - 6.1e-09 36.0 0.2 0.0014 18.4 0.0 2.5 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|336477804|ref|YP_004616945.1| - 0.0022 18.1 0.0 0.0044 17.1 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336477804|ref|YP_004616945.1| - 0.0026 17.8 0.1 0.0094 16.0 0.1 1.9 1 1 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|336477804|ref|YP_004616945.1| - 0.063 13.7 0.0 0.63 10.4 0.0 2.2 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.14 gi|336477804|ref|YP_004616945.1| - 0.075 12.6 0.1 0.75 9.3 0.0 2.1 1 1 1 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Peptidase_M10 PF00413.24 gi|336477805|ref|YP_004616946.1| - 1.7e-17 63.7 0.0 4.2e-17 62.4 0.0 1.6 1 1 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.6 gi|336477805|ref|YP_004616946.1| - 0.00039 20.9 0.0 0.00051 20.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|336477805|ref|YP_004616946.1| - 0.0037 16.3 0.2 0.0069 15.4 0.2 1.4 2 0 0 2 2 2 1 Peptidase M66 Metallopep PF12044.8 gi|336477805|ref|YP_004616946.1| - 0.0062 15.2 0.0 0.0083 14.8 0.0 1.1 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_5 PF13688.6 gi|336477805|ref|YP_004616946.1| - 0.026 14.7 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_4 PF13583.6 gi|336477805|ref|YP_004616946.1| - 0.032 13.9 0.0 0.044 13.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Astacin PF01400.24 gi|336477805|ref|YP_004616946.1| - 0.04 13.5 0.1 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 Astacin (Peptidase family M12A) Peptidase_M54 PF07998.11 gi|336477805|ref|YP_004616946.1| - 0.043 13.8 0.0 0.07 13.1 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M54 DUF4953 PF16313.5 gi|336477805|ref|YP_004616946.1| - 0.068 12.4 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Met-zincin DNA_binding_1 PF01035.20 gi|336477806|ref|YP_004616947.1| - 1.3e-26 92.5 0.0 1.5e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4 PF04545.16 gi|336477806|ref|YP_004616947.1| - 0.019 14.5 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 eIF-5a PF01287.20 gi|336477807|ref|YP_004616948.1| - 4.5e-10 39.5 0.7 4.5e-10 39.5 0.7 1.6 2 0 0 2 2 2 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|336477807|ref|YP_004616948.1| - 3.5e-05 23.7 0.0 5.7e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain Arginase PF00491.21 gi|336477808|ref|YP_004616949.1| - 3.1e-76 256.5 0.0 3.5e-76 256.4 0.0 1.0 1 0 0 1 1 1 1 Arginase family Elf1 PF05129.13 gi|336477809|ref|YP_004616950.1| - 0.021 14.9 0.4 0.049 13.7 0.4 1.6 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.6 gi|336477809|ref|YP_004616950.1| - 0.12 12.1 0.8 0.24 11.2 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain PCMT PF01135.19 gi|336477810|ref|YP_004616951.1| - 1.1e-72 244.2 0.0 1.3e-72 243.9 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|336477810|ref|YP_004616951.1| - 7.1e-13 48.6 0.0 9.6e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|336477810|ref|YP_004616951.1| - 6.3e-07 29.3 0.0 8.9e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_25 PF13649.6 gi|336477810|ref|YP_004616951.1| - 6.4e-07 30.0 0.0 1e-06 29.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|336477810|ref|YP_004616951.1| - 7.3e-07 28.6 0.0 9.5e-07 28.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltr_RsmB-F PF01189.17 gi|336477810|ref|YP_004616951.1| - 3.4e-06 26.9 0.0 8.2e-06 25.6 0.0 1.6 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F Fibrillarin PF01269.17 gi|336477810|ref|YP_004616951.1| - 6.9e-05 22.1 0.0 9.6e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_11 PF08241.12 gi|336477810|ref|YP_004616951.1| - 9.9e-05 22.9 0.0 0.00023 21.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|336477810|ref|YP_004616951.1| - 0.0001 21.5 0.0 0.00013 21.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 gi|336477810|ref|YP_004616951.1| - 0.00015 21.2 0.0 0.00021 20.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|336477810|ref|YP_004616951.1| - 0.00023 20.8 0.0 0.00035 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|336477810|ref|YP_004616951.1| - 0.00086 20.3 0.0 0.0017 19.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|336477810|ref|YP_004616951.1| - 0.0046 16.3 0.0 0.0059 15.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|336477810|ref|YP_004616951.1| - 0.0079 16.0 0.0 0.015 15.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|336477810|ref|YP_004616951.1| - 0.0095 15.4 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_12 PF08242.12 gi|336477810|ref|YP_004616951.1| - 0.018 15.8 0.0 0.031 15.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|336477810|ref|YP_004616951.1| - 0.034 14.1 0.0 0.041 13.9 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|336477810|ref|YP_004616951.1| - 0.071 12.9 0.0 0.098 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_16 PF10294.9 gi|336477810|ref|YP_004616951.1| - 0.14 11.8 0.1 0.21 11.3 0.1 1.2 1 0 0 1 1 1 0 Lysine methyltransferase DUF1614 PF07758.11 gi|336477811|ref|YP_004616952.1| - 2e-57 193.9 15.7 2e-57 193.9 15.7 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DUF2070 PF09843.9 gi|336477811|ref|YP_004616952.1| - 9 4.4 22.4 1.9 6.6 19.0 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) His_biosynth PF00977.21 gi|336477812|ref|YP_004616953.1| - 7.6e-87 290.6 0.3 8.7e-87 290.4 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|336477812|ref|YP_004616953.1| - 3e-06 26.7 0.3 0.0024 17.2 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|336477812|ref|YP_004616953.1| - 0.00013 21.3 0.1 0.0062 15.9 0.1 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase NMO PF03060.15 gi|336477812|ref|YP_004616953.1| - 0.0002 20.9 0.1 0.14 11.5 0.1 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|336477812|ref|YP_004616953.1| - 0.00036 20.0 0.2 0.02 14.3 0.1 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator Dus PF01207.17 gi|336477812|ref|YP_004616953.1| - 0.00045 19.4 0.1 0.0023 17.1 0.1 1.9 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|336477812|ref|YP_004616953.1| - 0.00081 18.7 0.1 0.29 10.3 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|336477812|ref|YP_004616953.1| - 0.0012 18.0 0.7 0.086 11.8 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.20 gi|336477812|ref|YP_004616953.1| - 0.023 13.6 0.1 0.034 13.0 0.1 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Peptidase_U32 PF01136.19 gi|336477813|ref|YP_004616954.1| - 2.5e-121 403.2 0.2 4.2e-89 297.7 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|336477813|ref|YP_004616954.1| - 2.3e-19 70.0 0.0 4.4e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 Collagenase Radical_SAM PF04055.21 gi|336477813|ref|YP_004616954.1| - 0.0022 18.4 0.0 1.5 9.2 0.0 3.4 2 1 1 3 3 3 2 Radical SAM superfamily BofA PF07441.11 gi|336477814|ref|YP_004616955.1| - 1.3e-11 44.6 25.8 1.5e-11 44.3 25.8 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Methyltransf_11 PF08241.12 gi|336477815|ref|YP_004616956.1| - 1.2e-21 77.1 0.0 1.9e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336477815|ref|YP_004616956.1| - 8e-21 74.6 0.0 1.3e-20 73.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336477815|ref|YP_004616956.1| - 3.4e-13 49.7 0.0 4.4e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336477815|ref|YP_004616956.1| - 5.1e-13 49.2 0.0 6.2e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336477815|ref|YP_004616956.1| - 3.3e-09 37.4 0.0 5.5e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|336477815|ref|YP_004616956.1| - 9.9e-08 31.6 0.0 1.2e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|336477815|ref|YP_004616956.1| - 2.8e-05 23.8 0.0 3.4e-05 23.5 0.0 1.3 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|336477815|ref|YP_004616956.1| - 0.00018 21.4 0.0 0.0024 17.8 0.0 2.4 1 1 1 2 2 2 1 Hypothetical methyltransferase MTS PF05175.14 gi|336477815|ref|YP_004616956.1| - 0.00026 20.6 0.0 0.00038 20.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|336477815|ref|YP_004616956.1| - 0.0053 16.7 0.0 0.0088 16.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.18 gi|336477815|ref|YP_004616956.1| - 0.0096 15.4 0.1 0.18 11.2 0.0 2.6 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain RepA_N PF06970.11 gi|336477815|ref|YP_004616956.1| - 0.013 15.4 0.1 0.035 14.0 0.1 1.7 2 0 0 2 2 1 0 Replication initiator protein A (RepA) N-terminus Methyltransf_9 PF08003.11 gi|336477815|ref|YP_004616956.1| - 0.016 14.1 0.0 0.018 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|336477815|ref|YP_004616956.1| - 0.029 13.8 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|336477815|ref|YP_004616956.1| - 0.048 13.1 0.0 0.065 12.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB TPMT PF05724.11 gi|336477815|ref|YP_004616956.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.7 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_4 PF02390.17 gi|336477815|ref|YP_004616956.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase tRNA-synt_1f PF01921.18 gi|336477816|ref|YP_004616957.1| - 8e-132 439.5 0.0 1.1e-131 439.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|336477816|ref|YP_004616957.1| - 2.2e-08 33.3 0.0 0.00011 21.0 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|336477816|ref|YP_004616957.1| - 2.9e-07 30.2 0.0 0.0064 15.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Peptidase_C62 PF12380.8 gi|336477816|ref|YP_004616957.1| - 0.16 11.1 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Gill-associated viral 3C-like peptidase PvlArgDC PF01862.16 gi|336477817|ref|YP_004616958.1| - 3.3e-63 212.3 0.1 3.7e-63 212.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Integrase_1 PF12835.7 gi|336477818|ref|YP_004616959.1| - 0.028 14.5 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 Integrase TPD PF14811.6 gi|336477819|ref|YP_004616960.1| - 1.7e-45 154.3 0.0 2.3e-45 153.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function TPD sequence-motif HhH-GPD PF00730.25 gi|336477820|ref|YP_004616961.1| - 1.4e-15 57.7 0.0 2.1e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|336477820|ref|YP_004616961.1| - 0.0011 18.7 0.0 0.0025 17.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|336477820|ref|YP_004616961.1| - 0.011 16.3 0.0 0.068 13.8 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain RICTOR_phospho PF14665.6 gi|336477821|ref|YP_004616962.1| - 0.02 15.2 3.3 0.12 12.7 0.3 2.2 1 1 0 2 2 2 0 Rapamycin-insensitive companion of mTOR, phosphorylation-site Dehydrin PF00257.19 gi|336477821|ref|YP_004616962.1| - 0.09 13.3 2.7 0.12 12.9 2.8 1.3 1 1 0 1 1 1 0 Dehydrin Pribosyltran_N PF13793.6 gi|336477822|ref|YP_004616963.1| - 7.2e-24 84.0 0.0 2.8e-22 78.8 0.0 2.3 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|336477822|ref|YP_004616963.1| - 3.2e-16 59.3 0.1 6e-16 58.4 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|336477822|ref|YP_004616963.1| - 1.5e-07 31.6 0.3 2.7e-07 30.8 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|336477822|ref|YP_004616963.1| - 7.3e-06 25.6 0.1 1.3e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|336477822|ref|YP_004616963.1| - 0.00058 19.4 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase MoaC PF01967.21 gi|336477823|ref|YP_004616964.1| - 7e-50 168.6 2.1 8e-50 168.5 2.1 1.0 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.17 gi|336477825|ref|YP_004616966.1| - 6.5e-52 176.4 0.0 8.8e-52 176.0 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|336477825|ref|YP_004616966.1| - 1.8e-39 135.4 0.4 4.1e-39 134.2 0.1 1.7 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|336477825|ref|YP_004616966.1| - 2.8e-06 26.9 0.0 5.6e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family TrkA_N PF02254.18 gi|336477826|ref|YP_004616967.1| - 8.1e-27 93.8 0.5 2.4e-26 92.3 0.3 2.0 2 0 0 2 2 1 1 TrkA-N domain DHH PF01368.20 gi|336477826|ref|YP_004616967.1| - 5.6e-16 58.6 0.1 2.3e-15 56.7 0.1 2.0 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.19 gi|336477826|ref|YP_004616967.1| - 3.6e-13 50.1 1.9 2.8e-11 44.0 0.0 3.2 2 1 0 3 3 3 1 DHHA1 domain ApbA PF02558.16 gi|336477826|ref|YP_004616967.1| - 0.00061 19.5 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|336477826|ref|YP_004616967.1| - 0.0009 19.8 0.1 0.0035 17.9 0.0 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Methyltransf_31 PF13847.6 gi|336477826|ref|YP_004616967.1| - 0.0018 18.1 0.1 0.0044 16.8 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain NAD_binding_7 PF13241.6 gi|336477826|ref|YP_004616967.1| - 0.0022 18.4 0.1 0.0066 16.9 0.1 1.8 1 1 1 2 2 2 1 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|336477826|ref|YP_004616967.1| - 0.0033 17.9 0.0 0.073 13.6 0.0 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|336477826|ref|YP_004616967.1| - 0.0037 16.8 0.0 0.007 16.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|336477826|ref|YP_004616967.1| - 0.0042 16.4 0.0 0.0077 15.5 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|336477826|ref|YP_004616967.1| - 0.0057 16.8 0.0 0.014 15.6 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 gi|336477826|ref|YP_004616967.1| - 0.0062 17.0 0.0 0.062 13.8 0.0 2.3 1 1 1 2 2 2 1 XdhC Rossmann domain FAD_binding_3 PF01494.19 gi|336477826|ref|YP_004616967.1| - 0.0079 15.5 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|336477826|ref|YP_004616967.1| - 0.031 14.3 0.0 0.075 13.0 0.0 1.8 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_8 PF13450.6 gi|336477826|ref|YP_004616967.1| - 0.032 14.4 0.0 0.096 12.9 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|336477826|ref|YP_004616967.1| - 0.036 13.4 0.0 0.11 11.8 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|336477826|ref|YP_004616967.1| - 0.05 13.9 0.1 0.17 12.1 0.0 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 gi|336477826|ref|YP_004616967.1| - 0.068 12.6 0.1 0.2 11.1 0.0 1.8 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family UDPG_MGDP_dh_C PF03720.15 gi|336477826|ref|YP_004616967.1| - 0.12 12.8 0.0 0.39 11.2 0.0 1.9 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CxxCxxCC PF03692.15 gi|336477827|ref|YP_004616968.1| - 4.1e-10 40.2 1.7 1.5e-09 38.4 0.7 2.3 2 1 0 2 2 2 1 Putative zinc- or iron-chelating domain Aconitase PF00330.20 gi|336477828|ref|YP_004616969.1| - 1.4e-98 330.9 0.4 1.5e-96 324.2 0.4 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|336477828|ref|YP_004616969.1| - 0.032 12.9 0.0 0.051 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) PRA-PH PF01503.17 gi|336477829|ref|YP_004616970.1| - 1.3e-15 57.5 0.1 1.6e-15 57.3 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|336477829|ref|YP_004616970.1| - 0.13 12.5 3.1 0.077 13.2 1.0 1.7 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain HrcA_DNA-bdg PF03444.15 gi|336477830|ref|YP_004616971.1| - 1.7e-36 123.7 0.4 3.4e-36 122.8 0.4 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|336477830|ref|YP_004616971.1| - 2e-22 79.4 5.2 2.3e-10 40.8 0.4 2.7 3 0 0 3 3 3 2 CBS domain Rrf2 PF02082.20 gi|336477830|ref|YP_004616971.1| - 9.7e-09 35.5 0.1 1.7e-08 34.6 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|336477830|ref|YP_004616971.1| - 1.2e-06 28.3 0.1 2.7e-06 27.2 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|336477830|ref|YP_004616971.1| - 0.027 14.0 0.3 0.28 10.8 0.4 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|336477830|ref|YP_004616971.1| - 0.063 13.2 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|336477830|ref|YP_004616971.1| - 0.086 12.5 0.1 0.61 9.8 0.0 2.4 3 0 0 3 3 3 0 Sigma-70, region 4 NOG1_N PF17835.1 gi|336477831|ref|YP_004616972.1| - 7.7e-48 162.5 0.5 1.4e-47 161.6 0.5 1.4 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|336477831|ref|YP_004616972.1| - 3.7e-22 77.9 0.1 9.1e-22 76.6 0.1 1.7 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|336477831|ref|YP_004616972.1| - 4.2e-18 65.5 0.0 8.9e-18 64.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|336477831|ref|YP_004616972.1| - 5.3e-11 42.3 0.0 9.1e-11 41.5 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|336477831|ref|YP_004616972.1| - 0.0018 17.9 0.0 0.0064 16.1 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.17 gi|336477831|ref|YP_004616972.1| - 0.0043 16.9 0.1 0.25 11.1 0.1 2.3 1 1 0 2 2 2 1 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|336477831|ref|YP_004616972.1| - 0.018 14.9 0.0 0.33 10.9 0.0 2.7 2 1 0 2 2 2 0 RsgA GTPase OKR_DC_1_N PF03709.15 gi|336477831|ref|YP_004616972.1| - 0.034 14.4 0.6 0.13 12.6 0.2 2.1 2 1 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain Dynamin_N PF00350.23 gi|336477831|ref|YP_004616972.1| - 0.067 13.3 0.2 1.9 8.5 0.1 2.6 1 1 1 2 2 2 0 Dynamin family Aminotran_1_2 PF00155.21 gi|336477832|ref|YP_004616973.1| - 6.2e-64 216.4 0.0 7.4e-64 216.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|336477832|ref|YP_004616973.1| - 1.4e-11 44.3 0.0 2e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|336477832|ref|YP_004616973.1| - 6.3e-11 41.8 0.0 1.2e-10 40.9 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|336477832|ref|YP_004616973.1| - 4.2e-07 29.5 0.0 7.1e-07 28.8 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|336477832|ref|YP_004616973.1| - 3.8e-06 25.7 0.0 5.7e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|336477832|ref|YP_004616973.1| - 0.0064 15.4 0.0 0.04 12.8 0.0 1.9 2 0 0 2 2 2 1 Allinase SIS PF01380.22 gi|336477833|ref|YP_004616974.1| - 5.6e-18 65.1 0.0 8e-18 64.6 0.0 1.2 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|336477833|ref|YP_004616974.1| - 0.0012 18.8 3.6 0.0043 17.1 0.4 2.2 1 1 1 2 2 2 1 SIS domain Glu_dehyd_C PF16912.5 gi|336477833|ref|YP_004616974.1| - 0.04 13.4 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus DUF5065 PF16723.5 gi|336477834|ref|YP_004616975.1| - 0.042 13.9 0.2 0.059 13.4 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5065) DUF2073 PF09846.9 gi|336477835|ref|YP_004616976.1| - 4.3e-47 158.3 0.9 4.9e-47 158.1 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) GTP_EFTU PF00009.27 gi|336477836|ref|YP_004616977.1| - 3e-16 59.5 0.3 9.1e-07 28.6 0.1 2.9 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|336477836|ref|YP_004616977.1| - 1.3e-15 57.4 0.0 1.8e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase Arf PF00025.21 gi|336477836|ref|YP_004616977.1| - 1.3e-07 31.2 0.0 0.0066 15.9 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|336477836|ref|YP_004616977.1| - 1.9e-07 31.2 0.1 0.013 15.4 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|336477836|ref|YP_004616977.1| - 1.6e-05 24.4 0.0 0.0071 15.8 0.0 2.4 1 1 0 2 2 2 2 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|336477836|ref|YP_004616977.1| - 2.8e-05 24.3 0.0 0.0036 17.5 0.0 2.2 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase FeoB_N PF02421.18 gi|336477836|ref|YP_004616977.1| - 3.8e-05 23.3 0.1 0.00061 19.3 0.1 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|336477836|ref|YP_004616977.1| - 0.00025 21.0 0.0 0.00041 20.3 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA_24 PF13479.6 gi|336477836|ref|YP_004616977.1| - 0.00038 20.2 0.1 0.0012 18.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain Septin PF00735.18 gi|336477836|ref|YP_004616977.1| - 0.0025 17.2 0.0 0.0035 16.6 0.0 1.2 1 0 0 1 1 1 1 Septin AAA PF00004.29 gi|336477836|ref|YP_004616977.1| - 0.003 18.0 0.1 0.011 16.1 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|336477836|ref|YP_004616977.1| - 0.0061 17.0 0.0 0.0098 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|336477836|ref|YP_004616977.1| - 0.0064 17.0 0.0 0.0084 16.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ATPase_2 PF01637.18 gi|336477836|ref|YP_004616977.1| - 0.0076 16.2 0.0 0.015 15.2 0.0 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|336477836|ref|YP_004616977.1| - 0.009 16.6 0.0 0.019 15.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|336477836|ref|YP_004616977.1| - 0.012 15.6 0.0 0.03 14.3 0.0 1.8 1 1 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|336477836|ref|YP_004616977.1| - 0.012 14.8 0.0 0.023 13.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Parvo_NS1 PF01057.17 gi|336477836|ref|YP_004616977.1| - 0.014 14.5 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NTPase_1 PF03266.15 gi|336477836|ref|YP_004616977.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 NTPase RNA_helicase PF00910.22 gi|336477836|ref|YP_004616977.1| - 0.03 14.7 0.0 0.052 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Dynamin_N PF00350.23 gi|336477836|ref|YP_004616977.1| - 0.033 14.2 0.0 5.8 6.9 0.0 2.3 1 1 0 2 2 2 0 Dynamin family AAA_22 PF13401.6 gi|336477836|ref|YP_004616977.1| - 0.034 14.4 0.0 0.12 12.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain TniB PF05621.11 gi|336477836|ref|YP_004616977.1| - 0.045 13.2 0.0 0.36 10.2 0.0 2.5 2 1 0 2 2 2 0 Bacterial TniB protein AAA_30 PF13604.6 gi|336477836|ref|YP_004616977.1| - 0.048 13.4 0.0 0.083 12.6 0.0 1.3 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|336477836|ref|YP_004616977.1| - 0.07 12.1 0.1 2 7.3 0.0 2.7 3 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ribo_biogen_C PF04034.13 gi|336477836|ref|YP_004616977.1| - 0.088 12.5 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Ribosome biogenesis protein, C-terminal PPV_E1_C PF00519.17 gi|336477836|ref|YP_004616977.1| - 0.18 10.6 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase NOG1 PF06858.14 gi|336477836|ref|YP_004616977.1| - 0.29 11.0 1.5 1.7 8.5 0.1 3.0 4 1 0 4 4 4 0 Nucleolar GTP-binding protein 1 (NOG1) PhoU PF01895.19 gi|336477838|ref|YP_004616979.1| - 1.2e-29 102.5 6.2 5.9e-20 71.5 0.6 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|336477838|ref|YP_004616979.1| - 6.2e-08 32.4 0.0 1.3e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin HAMP PF00672.25 gi|336477838|ref|YP_004616979.1| - 0.0084 16.5 1.3 0.46 10.9 0.0 2.8 3 0 0 3 3 3 1 HAMP domain DUF111 PF01969.17 gi|336477839|ref|YP_004616980.1| - 1.4e-118 396.3 0.0 1.6e-118 396.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 AAA PF00004.29 gi|336477840|ref|YP_004616981.1| - 7.1e-98 324.2 0.0 2.1e-48 164.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|336477840|ref|YP_004616981.1| - 1.5e-30 105.2 0.0 4.5e-30 103.7 0.0 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|336477840|ref|YP_004616981.1| - 6.2e-30 102.8 0.3 3.1e-17 62.1 0.1 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_2 PF02933.17 gi|336477840|ref|YP_004616981.1| - 8.2e-16 57.6 0.8 7.6e-15 54.5 0.7 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|336477840|ref|YP_004616981.1| - 4.4e-14 52.5 0.0 2.9e-06 27.1 0.0 3.2 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|336477840|ref|YP_004616981.1| - 8e-13 48.6 0.4 2.7e-05 24.2 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|336477840|ref|YP_004616981.1| - 1.7e-12 47.8 0.0 0.00011 22.4 0.0 3.0 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|336477840|ref|YP_004616981.1| - 7.4e-12 46.0 0.0 0.00016 22.1 0.0 3.7 2 2 0 2 2 2 2 AAA ATPase domain AAA_14 PF13173.6 gi|336477840|ref|YP_004616981.1| - 1.4e-10 41.3 0.0 0.0002 21.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|336477840|ref|YP_004616981.1| - 5.9e-10 39.6 0.6 0.011 15.9 0.0 4.0 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|336477840|ref|YP_004616981.1| - 4.8e-09 35.9 0.0 0.00028 20.2 0.0 2.7 2 0 0 2 2 2 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|336477840|ref|YP_004616981.1| - 4.6e-08 33.0 0.0 0.0077 16.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_33 PF13671.6 gi|336477840|ref|YP_004616981.1| - 5.3e-08 33.1 0.0 0.0043 17.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|336477840|ref|YP_004616981.1| - 1.3e-07 32.2 0.0 0.015 15.8 0.0 3.0 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.21 gi|336477840|ref|YP_004616981.1| - 1.2e-06 28.0 0.4 0.038 13.4 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|336477840|ref|YP_004616981.1| - 1.6e-06 27.7 0.0 0.0084 15.6 0.0 2.6 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_25 PF13481.6 gi|336477840|ref|YP_004616981.1| - 6.4e-06 25.9 0.7 0.85 9.2 0.0 3.7 3 0 0 3 3 3 2 AAA domain Vps4_C PF09336.10 gi|336477840|ref|YP_004616981.1| - 6.6e-06 26.0 0.2 0.0058 16.6 0.0 2.9 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain AAA_24 PF13479.6 gi|336477840|ref|YP_004616981.1| - 1.2e-05 25.2 0.0 0.057 13.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|336477840|ref|YP_004616981.1| - 1.2e-05 25.0 0.0 0.086 12.5 0.0 3.4 4 0 0 4 4 3 2 Sigma-54 interaction domain AAA_28 PF13521.6 gi|336477840|ref|YP_004616981.1| - 1.9e-05 24.9 0.0 0.13 12.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|336477840|ref|YP_004616981.1| - 2.3e-05 24.8 0.0 0.4 11.1 0.0 2.7 2 0 0 2 2 2 2 RNA helicase PhoH PF02562.16 gi|336477840|ref|YP_004616981.1| - 2.3e-05 23.9 0.1 0.36 10.2 0.0 3.0 3 0 0 3 3 2 2 PhoH-like protein ABC_tran PF00005.27 gi|336477840|ref|YP_004616981.1| - 2.5e-05 24.8 0.0 0.16 12.5 0.0 2.6 2 0 0 2 2 2 2 ABC transporter Zeta_toxin PF06414.12 gi|336477840|ref|YP_004616981.1| - 3.3e-05 23.3 0.2 0.07 12.4 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin ATPase PF06745.13 gi|336477840|ref|YP_004616981.1| - 0.00012 21.5 3.0 0.23 10.8 0.0 3.6 2 2 2 4 4 3 1 KaiC AAA_3 PF07726.11 gi|336477840|ref|YP_004616981.1| - 0.00022 21.1 0.1 0.42 10.5 0.0 3.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|336477840|ref|YP_004616981.1| - 0.00024 20.3 0.2 0.41 9.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|336477840|ref|YP_004616981.1| - 0.00032 20.7 0.0 1.5 8.8 0.0 2.9 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF2075 PF09848.9 gi|336477840|ref|YP_004616981.1| - 0.00054 19.3 0.0 0.99 8.6 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.6 gi|336477840|ref|YP_004616981.1| - 0.00059 20.3 0.1 0.94 9.9 0.0 2.9 3 0 0 3 3 2 1 AAA domain DUF815 PF05673.13 gi|336477840|ref|YP_004616981.1| - 0.0014 17.9 0.0 0.67 9.1 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Guanylate_kin PF00625.21 gi|336477840|ref|YP_004616981.1| - 0.0023 17.6 0.5 28 4.3 0.0 4.2 2 2 2 4 4 4 0 Guanylate kinase AAA_30 PF13604.6 gi|336477840|ref|YP_004616981.1| - 0.0029 17.3 2.3 1.7 8.3 0.9 3.0 2 1 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|336477840|ref|YP_004616981.1| - 0.0032 17.4 0.1 6.6 6.6 0.0 3.3 2 2 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_11 PF13086.6 gi|336477840|ref|YP_004616981.1| - 0.0035 17.2 0.1 1.7 8.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|336477840|ref|YP_004616981.1| - 0.004 17.5 3.3 1.7 8.9 0.1 3.0 3 1 0 3 3 2 1 AAA domain NB-ARC PF00931.22 gi|336477840|ref|YP_004616981.1| - 0.0048 16.1 0.0 2.1 7.4 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain Sigma54_activ_2 PF14532.6 gi|336477840|ref|YP_004616981.1| - 0.0064 16.6 0.0 1.1 9.4 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain IPT PF01745.16 gi|336477840|ref|YP_004616981.1| - 0.015 14.7 0.6 1.5 8.1 0.0 2.8 3 0 0 3 3 3 0 Isopentenyl transferase ATP-synt_ab PF00006.25 gi|336477840|ref|YP_004616981.1| - 0.016 14.9 0.1 0.22 11.1 0.0 2.4 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.12 gi|336477840|ref|YP_004616981.1| - 0.017 15.0 0.3 8.1 6.3 0.1 3.0 3 0 0 3 3 3 0 NACHT domain TniB PF05621.11 gi|336477840|ref|YP_004616981.1| - 0.022 14.2 0.1 11 5.3 0.0 3.4 3 1 1 4 4 4 0 Bacterial TniB protein NTPase_1 PF03266.15 gi|336477840|ref|YP_004616981.1| - 0.026 14.5 1.5 8.2 6.3 0.0 3.4 2 1 1 3 3 3 0 NTPase Cytidylate_kin PF02224.18 gi|336477840|ref|YP_004616981.1| - 0.029 14.1 0.2 8.8 6.0 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase Rad17 PF03215.15 gi|336477840|ref|YP_004616981.1| - 0.029 14.3 0.0 1.9 8.4 0.0 2.8 2 1 0 2 2 2 0 Rad17 P-loop domain ResIII PF04851.15 gi|336477840|ref|YP_004616981.1| - 0.03 14.3 0.0 5.4 7.0 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|336477840|ref|YP_004616981.1| - 0.053 12.6 0.0 2 7.4 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Bac_DnaA PF00308.18 gi|336477840|ref|YP_004616981.1| - 0.058 13.2 0.0 11 5.7 0.0 2.3 2 0 0 2 2 2 0 Bacterial dnaA protein LID PF17916.1 gi|336477840|ref|YP_004616981.1| - 0.063 12.9 0.1 0.19 11.4 0.1 1.8 1 0 0 1 1 1 0 LIM interaction domain (LID) AFG1_ATPase PF03969.16 gi|336477840|ref|YP_004616981.1| - 0.12 11.2 0.0 7.6 5.3 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase AAA_29 PF13555.6 gi|336477840|ref|YP_004616981.1| - 0.15 11.8 0.0 18 5.2 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Hydin_ADK PF17213.3 gi|336477840|ref|YP_004616981.1| - 0.2 11.9 0.5 18 5.6 0.0 2.2 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain PRC PF05239.16 gi|336477841|ref|YP_004616982.1| - 9.5e-11 41.6 0.2 1.2e-10 41.3 0.2 1.1 1 0 0 1 1 1 1 PRC-barrel domain Hydrolase_3 PF08282.12 gi|336477842|ref|YP_004616983.1| - 2.5e-26 93.0 0.2 8.8e-18 64.9 0.1 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|336477842|ref|YP_004616983.1| - 1.7e-07 31.1 0.0 2e-06 27.6 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|336477842|ref|YP_004616983.1| - 7.7e-06 26.3 1.1 1.7 8.9 0.0 3.1 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336477842|ref|YP_004616983.1| - 0.0022 18.4 2.7 3.8 7.9 0.0 3.3 1 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Rad51 PF08423.11 gi|336477843|ref|YP_004616984.1| - 1.3e-86 290.1 0.0 1.6e-86 289.7 0.0 1.0 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|336477843|ref|YP_004616984.1| - 2e-12 47.5 0.4 4.3e-12 46.4 0.4 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|336477843|ref|YP_004616984.1| - 7.9e-10 38.6 0.1 0.00032 20.3 0.1 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|336477843|ref|YP_004616984.1| - 9.3e-08 31.9 0.0 1.5e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain HHH_2 PF12826.7 gi|336477843|ref|YP_004616984.1| - 4e-06 26.8 1.4 6e-06 26.3 0.3 1.8 2 0 0 2 2 1 1 Helix-hairpin-helix motif ATPase PF06745.13 gi|336477843|ref|YP_004616984.1| - 4.9e-06 26.1 0.0 6.8e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 KaiC DNA_pol_lambd_f PF10391.9 gi|336477843|ref|YP_004616984.1| - 0.00053 19.8 0.1 0.0037 17.1 0.0 2.4 2 1 1 3 3 3 1 Fingers domain of DNA polymerase lambda AAA_22 PF13401.6 gi|336477843|ref|YP_004616984.1| - 0.0014 18.9 0.0 0.003 17.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain Cdd1 PF11731.8 gi|336477843|ref|YP_004616984.1| - 0.0059 16.8 0.0 0.024 14.9 0.0 2.0 2 1 1 3 3 3 1 Pathogenicity locus HHH PF00633.23 gi|336477843|ref|YP_004616984.1| - 0.0067 16.2 0.4 1.5 8.8 0.4 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_24 PF13479.6 gi|336477843|ref|YP_004616984.1| - 0.018 14.8 0.0 0.038 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|336477843|ref|YP_004616984.1| - 0.057 13.3 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|336477843|ref|YP_004616984.1| - 0.14 12.6 0.0 0.39 11.1 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|336477843|ref|YP_004616984.1| - 0.15 12.7 0.0 0.46 11.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain CTP_transf_like PF01467.26 gi|336477844|ref|YP_004616985.1| - 1.8e-12 47.6 0.0 2.1e-12 47.4 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|336477844|ref|YP_004616985.1| - 0.013 15.4 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 FAD synthetase DUF4351 PF14261.6 gi|336477845|ref|YP_004616986.1| - 0.017 15.2 0.2 0.042 13.9 0.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4351) AP_endonuc_2 PF01261.24 gi|336477846|ref|YP_004616987.1| - 1.4e-16 60.6 0.0 1.7e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel ABC_tran PF00005.27 gi|336477847|ref|YP_004616988.1| - 5.1e-33 114.5 0.0 9.5e-33 113.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336477847|ref|YP_004616988.1| - 1.3e-11 44.9 1.9 4.2e-07 30.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336477847|ref|YP_004616988.1| - 8.7e-06 25.3 0.2 0.00028 20.4 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|336477847|ref|YP_004616988.1| - 0.00017 21.5 0.3 0.0045 16.8 0.2 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|336477847|ref|YP_004616988.1| - 0.00041 20.0 0.1 0.0013 18.5 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|336477847|ref|YP_004616988.1| - 0.0027 17.6 0.0 0.0052 16.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|336477847|ref|YP_004616988.1| - 0.0042 17.6 0.5 0.0097 16.4 0.1 1.9 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|336477847|ref|YP_004616988.1| - 0.05 13.7 0.3 0.28 11.3 0.1 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_13 PF13166.6 gi|336477847|ref|YP_004616988.1| - 0.055 12.1 0.1 3.9 6.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|336477847|ref|YP_004616988.1| - 0.18 11.3 0.1 0.5 9.9 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region PGF-CTERM PF18204.1 gi|336477848|ref|YP_004616989.1| - 1.9e-09 37.2 2.2 1.9e-09 37.2 2.2 1.7 2 0 0 2 2 1 1 PGF-CTERM motif DUF3375 PF11855.8 gi|336477848|ref|YP_004616989.1| - 2.1e-08 33.5 16.0 0.0072 15.3 3.2 3.2 3 0 0 3 3 3 3 Protein of unknown function (DUF3375) DUF4363 PF14276.6 gi|336477848|ref|YP_004616989.1| - 6.5e-08 32.7 17.4 0.0017 18.5 0.3 5.1 5 1 0 5 5 3 3 Domain of unknown function (DUF4363) THP2 PF09432.10 gi|336477848|ref|YP_004616989.1| - 2.5e-07 30.8 11.5 0.0088 16.1 0.3 3.8 3 1 0 3 3 3 3 Tho complex subunit THP2 DUF2408 PF10303.9 gi|336477848|ref|YP_004616989.1| - 2.5e-07 31.3 12.4 0.0095 16.5 0.5 3.4 3 0 0 3 3 3 3 Protein of unknown function (DUF2408) HTH_Tnp_Tc3_1 PF11427.8 gi|336477848|ref|YP_004616989.1| - 2.6e-07 30.4 0.3 0.38 10.6 0.0 3.8 3 0 0 3 3 3 2 Tc3 transposase SCAB_CC PF16712.5 gi|336477848|ref|YP_004616989.1| - 2.8e-07 30.5 5.4 0.18 11.7 0.1 4.4 4 1 1 5 5 5 3 Coiled-coil regions of plant-specific actin-binding protein Baculo_PEP_C PF04513.12 gi|336477848|ref|YP_004616989.1| - 7.2e-06 26.1 0.3 0.14 12.2 0.2 3.7 3 0 0 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus MCPsignal PF00015.21 gi|336477848|ref|YP_004616989.1| - 0.00094 19.0 3.3 2.9 7.7 0.1 4.3 4 1 0 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain LUC7 PF03194.15 gi|336477848|ref|YP_004616989.1| - 0.0037 17.0 15.7 0.022 14.4 1.0 3.2 2 1 0 3 3 3 2 LUC7 N_terminus DUF2203 PF09969.9 gi|336477848|ref|YP_004616989.1| - 0.0052 17.5 15.5 7.9 7.2 0.1 5.6 2 2 2 5 5 5 0 Uncharacterized conserved protein (DUF2203) Syntaxin_2 PF14523.6 gi|336477848|ref|YP_004616989.1| - 0.012 15.9 15.2 1.7 9.1 0.2 5.4 2 2 2 4 4 4 0 Syntaxin-like protein DUF1640 PF07798.11 gi|336477848|ref|YP_004616989.1| - 0.018 15.1 16.6 0.59 10.2 0.3 4.6 2 1 2 4 4 4 0 Protein of unknown function (DUF1640) Seryl_tRNA_N PF02403.22 gi|336477848|ref|YP_004616989.1| - 0.018 15.2 10.2 4.8 7.5 0.5 4.6 3 2 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain MerR_1 PF13411.6 gi|336477848|ref|YP_004616989.1| - 0.026 14.6 0.0 5.2 7.2 0.0 3.3 3 0 0 3 3 3 0 MerR HTH family regulatory protein DUF2379 PF09543.10 gi|336477848|ref|YP_004616989.1| - 0.033 14.4 7.6 2.8 8.2 0.4 3.9 3 2 0 3 3 3 0 Protein of unknown function (DUF2379) Yuri_gagarin PF15934.5 gi|336477848|ref|YP_004616989.1| - 0.04 13.8 12.8 1.1 9.1 0.5 3.6 1 1 1 3 3 3 0 Yuri gagarin ArlS_N PF18719.1 gi|336477848|ref|YP_004616989.1| - 0.042 14.0 0.0 10 6.3 0.0 3.7 4 0 0 4 4 3 0 ArlS sensor domain Cauli_AT PF03233.13 gi|336477848|ref|YP_004616989.1| - 0.051 13.5 4.7 7.8 6.4 0.2 3.6 3 0 0 3 3 3 0 Aphid transmission protein TPR_19 PF14559.6 gi|336477848|ref|YP_004616989.1| - 0.068 13.7 0.0 35 5.0 0.0 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF2443 PF10398.9 gi|336477848|ref|YP_004616989.1| - 0.088 12.9 0.9 53 4.0 0.0 3.8 3 1 0 3 3 3 0 Protein of unknown function (DUF2443) DUF948 PF06103.11 gi|336477848|ref|YP_004616989.1| - 0.091 13.0 13.5 4.5 7.6 0.4 6.4 4 2 1 5 5 4 0 Bacterial protein of unknown function (DUF948) HlyD_2 PF12700.7 gi|336477848|ref|YP_004616989.1| - 0.11 11.3 16.4 0.27 9.9 1.3 3.2 2 1 1 3 3 3 0 HlyD family secretion protein Mt_ATP_synt PF15704.5 gi|336477848|ref|YP_004616989.1| - 0.13 12.1 2.5 71 3.2 0.1 3.8 3 2 1 4 4 4 0 Mitochondrial ATP synthase subunit SesA PF17107.5 gi|336477848|ref|YP_004616989.1| - 0.14 12.3 5.8 2.2 8.5 0.2 3.3 4 0 0 4 4 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases TMPIT PF07851.13 gi|336477848|ref|YP_004616989.1| - 0.16 11.2 6.5 5.4 6.2 0.1 3.5 2 1 1 3 3 3 0 TMPIT-like protein Syntaxin-6_N PF09177.11 gi|336477848|ref|YP_004616989.1| - 0.16 12.5 11.5 14 6.3 0.1 5.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal TACC_C PF05010.14 gi|336477848|ref|YP_004616989.1| - 0.19 11.5 10.1 8.4 6.1 0.2 4.4 2 2 2 4 4 4 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Mer2 PF09074.10 gi|336477848|ref|YP_004616989.1| - 0.24 11.2 9.1 4.9 6.9 0.3 3.6 2 2 1 3 3 3 0 Mer2 Lipoprotein_7 PF01540.16 gi|336477848|ref|YP_004616989.1| - 0.33 10.2 11.6 5.9 6.1 0.1 3.2 2 1 1 3 3 3 0 Adhesin lipoprotein NPV_P10 PF05531.12 gi|336477848|ref|YP_004616989.1| - 0.65 10.5 10.8 1.5e+02 2.9 1.3 6.3 2 2 4 6 6 6 0 Nucleopolyhedrovirus P10 protein Alpha-E PF04168.12 gi|336477848|ref|YP_004616989.1| - 1 9.1 13.7 1.1 8.9 0.1 4.1 3 1 0 4 4 4 0 A predicted alpha-helical domain with a conserved ER motif. Prominin PF05478.11 gi|336477848|ref|YP_004616989.1| - 1.1 7.1 4.7 7.9 4.3 0.2 2.9 1 1 2 3 3 3 0 Prominin DUF3908 PF13048.6 gi|336477848|ref|YP_004616989.1| - 1.5 9.1 7.5 9.6 6.5 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3908) CheZ PF04344.13 gi|336477848|ref|YP_004616989.1| - 1.5 8.7 8.1 41 4.0 0.1 4.2 3 2 1 4 4 4 0 Chemotaxis phosphatase, CheZ Nmad5 PF18757.1 gi|336477848|ref|YP_004616989.1| - 2.9 8.1 7.8 25 5.0 0.2 3.4 2 1 0 3 3 3 0 Nucleotide modification associated domain 5 DUF4200 PF13863.6 gi|336477848|ref|YP_004616989.1| - 3.4 8.1 11.2 12 6.4 0.5 4.6 2 2 0 3 3 3 0 Domain of unknown function (DUF4200) HeLo PF14479.6 gi|336477848|ref|YP_004616989.1| - 5.3 6.8 13.3 4.9 6.9 3.7 3.9 3 2 0 3 3 3 0 Prion-inhibition and propagation Allexi_40kDa PF05549.11 gi|336477848|ref|YP_004616989.1| - 5.9 6.3 18.2 1.3 8.4 2.6 4.3 1 1 4 5 5 5 0 Allexivirus 40kDa protein LidA_Long_CC PF18641.1 gi|336477848|ref|YP_004616989.1| - 7.9 6.5 29.8 0.44 10.6 1.6 5.4 5 3 1 6 6 4 0 LidA long coiled-coil domain CbiM PF01891.16 gi|336477849|ref|YP_004616990.1| - 1.8e-47 161.9 20.9 2e-47 161.7 20.9 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF1129 PF06570.11 gi|336477849|ref|YP_004616990.1| - 1.6 8.2 11.4 0.088 12.3 2.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) PhaG_MnhG_YufB PF03334.14 gi|336477850|ref|YP_004616991.1| - 2.5 8.4 5.7 0.49 10.7 1.5 1.8 2 0 0 2 2 2 0 Na+/H+ antiporter subunit LPAM_1 PF08139.12 gi|336477850|ref|YP_004616991.1| - 3.2 8.4 4.7 4.3 8.0 1.0 2.4 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site CbiQ PF02361.16 gi|336477851|ref|YP_004616992.1| - 1.5e-39 135.9 14.6 2.1e-39 135.4 14.6 1.2 1 0 0 1 1 1 1 Cobalt transport protein TP_methylase PF00590.20 gi|336477852|ref|YP_004616993.1| - 2.5e-21 76.6 0.0 1.6e-20 74.0 0.0 1.8 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases SnoaL_3 PF13474.6 gi|336477852|ref|YP_004616993.1| - 0.0039 17.5 0.0 0.0058 16.9 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain CbiD PF01888.17 gi|336477853|ref|YP_004616994.1| - 7e-50 169.7 0.8 9.5e-50 169.2 0.8 1.2 1 0 0 1 1 1 1 CbiD sCache_like PF16736.5 gi|336477853|ref|YP_004616994.1| - 0.0032 17.5 0.0 0.0074 16.4 0.0 1.6 1 0 0 1 1 1 1 Single Cache-like dCache_3 PF14827.6 gi|336477853|ref|YP_004616994.1| - 0.081 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Double sensory domain of two-component sensor kinase DNA_mis_repair PF01119.19 gi|336477854|ref|YP_004616995.1| - 1.4e-38 131.2 0.0 2.5e-38 130.4 0.0 1.5 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.11 gi|336477854|ref|YP_004616995.1| - 5.5e-36 123.5 0.0 1.2e-35 122.5 0.0 1.5 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.6 gi|336477854|ref|YP_004616995.1| - 1.5e-13 50.7 1.7 3.7e-13 49.5 1.7 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|336477854|ref|YP_004616995.1| - 1.7e-08 34.9 0.2 3.9e-08 33.8 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YokU PF14122.6 gi|336477854|ref|YP_004616995.1| - 0.033 14.2 0.2 0.097 12.7 0.2 1.8 1 0 0 1 1 1 0 YokU-like protein, putative antitoxin MutS_V PF00488.21 gi|336477855|ref|YP_004616996.1| - 1e-84 283.3 0.1 1.8e-84 282.4 0.1 1.4 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 gi|336477855|ref|YP_004616996.1| - 5.9e-44 148.9 0.0 1.3e-43 147.8 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 gi|336477855|ref|YP_004616996.1| - 1.6e-42 145.9 1.0 3.7e-42 144.7 0.1 2.0 2 0 0 2 2 2 1 MutS domain III MutS_IV PF05190.18 gi|336477855|ref|YP_004616996.1| - 2.7e-31 107.8 0.2 7.1e-31 106.4 0.2 1.8 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|336477855|ref|YP_004616996.1| - 4.5e-31 108.0 0.0 1.2e-30 106.5 0.0 1.8 1 0 0 1 1 1 1 MutS domain II AAA_27 PF13514.6 gi|336477855|ref|YP_004616996.1| - 0.0048 16.5 0.0 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336477855|ref|YP_004616996.1| - 0.013 15.2 0.0 0.035 13.9 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|336477855|ref|YP_004616996.1| - 0.028 14.9 1.0 0.45 11.0 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_14 PF13173.6 gi|336477855|ref|YP_004616996.1| - 0.11 12.5 0.0 0.52 10.4 0.0 2.2 1 1 0 1 1 1 0 AAA domain HTH_5 PF01022.20 gi|336477856|ref|YP_004616997.1| - 5.6e-10 38.9 0.2 9.7e-10 38.2 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|336477856|ref|YP_004616997.1| - 5.3e-07 29.6 0.0 1.2e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336477856|ref|YP_004616997.1| - 3.8e-05 23.2 0.1 7.8e-05 22.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|336477856|ref|YP_004616997.1| - 9.8e-05 22.2 0.0 0.00017 21.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|336477856|ref|YP_004616997.1| - 0.003 17.4 0.0 0.0052 16.7 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|336477856|ref|YP_004616997.1| - 0.0035 17.2 0.0 0.0078 16.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|336477856|ref|YP_004616997.1| - 0.0049 16.8 0.0 0.013 15.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DUF4430 PF14478.6 gi|336477856|ref|YP_004616997.1| - 0.019 15.5 0.0 0.055 14.1 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4430) Rrf2 PF02082.20 gi|336477856|ref|YP_004616997.1| - 0.032 14.6 0.0 0.072 13.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.12 gi|336477856|ref|YP_004616997.1| - 0.038 13.9 0.0 0.066 13.2 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_1 PF00126.27 gi|336477856|ref|YP_004616997.1| - 0.2 11.6 0.0 0.4 10.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family AP_endonuc_2 PF01261.24 gi|336477857|ref|YP_004616998.1| - 5.5e-17 61.9 0.1 1.9e-16 60.1 0.1 1.8 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Peripla_BP_2 PF01497.18 gi|336477858|ref|YP_004616999.1| - 1.6e-38 132.6 0.1 2.1e-38 132.2 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Complex1_51K PF01512.17 gi|336477858|ref|YP_004616999.1| - 0.079 12.8 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase 51 Kd subunit FecCD PF01032.18 gi|336477859|ref|YP_004617000.1| - 8.5e-92 307.5 35.3 1.1e-91 307.1 35.3 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|336477859|ref|YP_004617000.1| - 0.053 13.0 31.0 0.0059 16.1 22.4 2.5 1 1 1 2 2 2 0 ABC 3 transport family MWFE PF15879.5 gi|336477859|ref|YP_004617000.1| - 5 7.4 6.2 1.3 9.2 0.1 3.1 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase MWFE subunit ABC_tran PF00005.27 gi|336477860|ref|YP_004617001.1| - 2e-34 119.0 0.1 2.9e-34 118.5 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336477860|ref|YP_004617001.1| - 3.3e-10 40.3 0.9 4e-05 23.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336477860|ref|YP_004617001.1| - 2.6e-07 30.3 0.3 6e-07 29.1 0.3 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|336477860|ref|YP_004617001.1| - 1.7e-05 24.7 4.5 2.1e-05 24.4 0.3 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|336477860|ref|YP_004617001.1| - 4.7e-05 23.8 0.1 0.0004 20.8 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|336477860|ref|YP_004617001.1| - 5.7e-05 23.7 0.1 7.3e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336477860|ref|YP_004617001.1| - 9.5e-05 22.8 0.0 0.00016 22.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336477860|ref|YP_004617001.1| - 0.00016 22.0 0.5 0.0014 18.9 0.5 2.1 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|336477860|ref|YP_004617001.1| - 0.00028 20.3 0.0 0.00043 19.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin T2SSE PF00437.20 gi|336477860|ref|YP_004617001.1| - 0.001 18.2 0.3 0.0027 16.8 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|336477860|ref|YP_004617001.1| - 0.0011 18.6 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|336477860|ref|YP_004617001.1| - 0.0017 18.1 0.1 0.0037 17.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|336477860|ref|YP_004617001.1| - 0.0067 15.1 0.1 0.25 10.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|336477860|ref|YP_004617001.1| - 0.009 15.8 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain PIF1 PF05970.14 gi|336477860|ref|YP_004617001.1| - 0.0095 15.1 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 1 PIF1-like helicase AAA_14 PF13173.6 gi|336477860|ref|YP_004617001.1| - 0.015 15.4 0.1 0.057 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|336477860|ref|YP_004617001.1| - 0.015 14.5 0.1 0.04 13.1 0.1 1.7 1 0 0 1 1 1 0 NB-ARC domain AAA_7 PF12775.7 gi|336477860|ref|YP_004617001.1| - 0.017 14.7 0.9 0.093 12.2 0.1 2.3 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|336477860|ref|YP_004617001.1| - 0.019 15.1 0.1 0.027 14.7 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|336477860|ref|YP_004617001.1| - 0.019 14.9 0.1 0.1 12.6 0.1 2.1 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|336477860|ref|YP_004617001.1| - 0.025 14.0 0.0 0.082 12.3 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 gi|336477860|ref|YP_004617001.1| - 0.035 12.9 0.8 0.41 9.4 0.2 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.19 gi|336477860|ref|YP_004617001.1| - 0.038 13.6 0.0 0.073 12.7 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|336477860|ref|YP_004617001.1| - 0.05 13.2 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|336477860|ref|YP_004617001.1| - 0.061 13.2 0.4 0.43 10.5 0.0 2.2 2 1 0 2 2 2 0 NTPase NACHT PF05729.12 gi|336477860|ref|YP_004617001.1| - 0.067 13.1 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TniB PF05621.11 gi|336477860|ref|YP_004617001.1| - 0.07 12.5 0.8 4.6 6.6 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_19 PF13245.6 gi|336477860|ref|YP_004617001.1| - 0.082 13.2 0.7 0.21 11.9 0.7 1.9 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|336477860|ref|YP_004617001.1| - 0.088 12.4 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|336477860|ref|YP_004617001.1| - 0.12 12.1 0.1 0.21 11.2 0.1 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ATPase_2 PF01637.18 gi|336477860|ref|YP_004617001.1| - 0.13 12.1 0.3 0.26 11.2 0.3 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|336477860|ref|YP_004617001.1| - 0.14 12.4 0.0 1.8 8.8 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.14 gi|336477860|ref|YP_004617001.1| - 0.2 11.5 1.1 0.34 10.8 0.0 1.9 3 0 0 3 3 1 0 Molybdopterin guanine dinucleotide synthesis protein B FMN_red PF03358.15 gi|336477861|ref|YP_004617002.1| - 2.1e-11 43.8 0.2 2.9e-11 43.3 0.2 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|336477861|ref|YP_004617002.1| - 0.00049 19.9 0.0 0.00062 19.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.25 gi|336477861|ref|YP_004617002.1| - 0.0014 18.9 0.1 0.026 14.7 0.1 2.1 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|336477861|ref|YP_004617002.1| - 0.0065 16.7 0.0 0.19 11.9 0.0 2.2 1 1 1 2 2 2 1 Flavodoxin domain Hydant_A_N PF05378.13 gi|336477862|ref|YP_004617003.1| - 2.4e-31 108.8 3.2 3.1e-27 95.4 0.3 3.6 3 1 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region Hydantoinase_A PF01968.18 gi|336477862|ref|YP_004617003.1| - 3.5e-30 105.3 3.4 1.2e-29 103.5 0.5 2.2 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|336477862|ref|YP_004617003.1| - 1.1e-06 27.6 1.7 0.0061 15.2 0.1 2.2 2 0 0 2 2 2 2 MutL protein ROK PF00480.20 gi|336477862|ref|YP_004617003.1| - 0.02 14.4 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 ROK family BcrAD_BadFG PF01869.20 gi|336477862|ref|YP_004617003.1| - 0.038 13.5 0.1 0.83 9.1 0.0 2.3 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|336477862|ref|YP_004617003.1| - 0.2 12.1 2.6 2 8.9 0.1 2.8 3 0 0 3 3 3 0 Cell division protein FtsA MtaB PF12176.8 gi|336477863|ref|YP_004617004.1| - 2.9e-234 778.0 1.8 3.2e-234 777.8 1.8 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit B12-binding PF02310.19 gi|336477864|ref|YP_004617005.1| - 1.8e-19 69.9 0.3 3e-19 69.3 0.3 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|336477864|ref|YP_004617005.1| - 3.2e-15 56.3 0.0 8.3e-15 55.0 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain DNA_pol3_gamma3 PF12169.8 gi|336477864|ref|YP_004617005.1| - 0.021 14.8 0.0 0.054 13.4 0.0 1.7 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III MtaB PF12176.8 gi|336477865|ref|YP_004617006.1| - 2.9e-228 758.2 2.3 3.2e-228 758.1 2.3 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit B12-binding PF02310.19 gi|336477866|ref|YP_004617007.1| - 5.3e-19 68.4 0.2 8.2e-19 67.8 0.2 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|336477866|ref|YP_004617007.1| - 1.6e-16 60.5 0.1 1.1e-15 57.8 0.0 2.2 2 0 0 2 2 2 1 B12 binding domain DUF2375 PF09558.10 gi|336477866|ref|YP_004617007.1| - 0.036 14.1 0.1 0.1 12.6 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2375) DNA_pol3_gamma3 PF12169.8 gi|336477866|ref|YP_004617007.1| - 0.054 13.4 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III DUF3834 PF12916.7 gi|336477866|ref|YP_004617007.1| - 0.057 12.7 0.0 0.21 10.8 0.0 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF3834) Ocnus PF05005.15 gi|336477866|ref|YP_004617007.1| - 0.09 12.9 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Janus/Ocnus family (Ocnus) Methyltrn_RNA_4 PF09936.9 gi|336477866|ref|YP_004617007.1| - 0.11 12.3 0.0 13 5.6 0.0 2.2 1 1 1 2 2 2 0 SAM-dependent RNA methyltransferase PAS PF00989.25 gi|336477867|ref|YP_004617008.1| - 2.7e-58 194.8 0.3 2.6e-11 43.5 0.0 6.3 6 0 0 6 6 6 6 PAS fold PAS_9 PF13426.7 gi|336477867|ref|YP_004617008.1| - 1.2e-55 186.1 7.3 8.3e-14 51.7 0.1 6.6 6 0 0 6 6 6 6 PAS domain PAS_3 PF08447.12 gi|336477867|ref|YP_004617008.1| - 6.6e-49 164.1 0.0 1.1e-17 64.1 0.2 6.4 6 0 0 6 6 6 6 PAS fold PAS_4 PF08448.10 gi|336477867|ref|YP_004617008.1| - 2.9e-40 136.9 0.0 3.6e-07 30.4 0.0 6.5 6 0 0 6 6 6 6 PAS fold PAS_8 PF13188.7 gi|336477867|ref|YP_004617008.1| - 4.3e-35 119.1 0.1 1.8e-08 34.2 0.0 5.5 5 0 0 5 5 5 4 PAS domain GAF_2 PF13185.6 gi|336477867|ref|YP_004617008.1| - 3.2e-13 50.2 0.0 2.2e-06 28.0 0.0 2.8 2 1 0 2 2 2 2 GAF domain PAS_11 PF14598.6 gi|336477867|ref|YP_004617008.1| - 1.5e-08 34.8 0.0 1.1e-05 25.5 0.0 3.4 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.6 gi|336477867|ref|YP_004617008.1| - 0.00024 21.4 0.0 0.00062 20.1 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|336477867|ref|YP_004617008.1| - 0.00026 21.1 0.7 27 5.0 0.0 6.0 5 2 0 5 5 5 0 PAS fold Suppressor_P21 PF11479.8 gi|336477867|ref|YP_004617008.1| - 0.013 15.6 0.0 11 6.3 0.0 3.3 2 0 0 2 2 2 0 RNA silencing suppressor P21 C-terminal domain dCache_1 PF02743.18 gi|336477867|ref|YP_004617008.1| - 0.08 12.7 1.2 12 5.5 0.0 3.6 4 0 0 4 4 4 0 Cache domain cobW PF02492.19 gi|336477868|ref|YP_004617009.1| - 2.1e-37 128.4 0.1 3.9e-37 127.5 0.0 1.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|336477868|ref|YP_004617009.1| - 0.0001 22.4 0.9 0.00046 20.3 0.9 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 gi|336477868|ref|YP_004617009.1| - 0.00046 19.9 0.7 0.0011 18.7 0.3 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain IFN-gamma PF00714.17 gi|336477868|ref|YP_004617009.1| - 0.0019 18.0 1.5 0.0052 16.6 1.5 1.7 1 0 0 1 1 1 1 Interferon gamma MeaB PF03308.16 gi|336477868|ref|YP_004617009.1| - 0.003 16.6 1.2 0.005 15.8 0.4 1.7 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|336477868|ref|YP_004617009.1| - 0.012 15.5 0.1 0.033 14.1 0.1 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2621 PF11084.8 gi|336477868|ref|YP_004617009.1| - 0.034 14.1 0.1 14 5.7 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2621) NTPase_1 PF03266.15 gi|336477868|ref|YP_004617009.1| - 0.089 12.7 0.6 0.28 11.1 0.6 1.9 1 0 0 1 1 1 0 NTPase AAA_31 PF13614.6 gi|336477868|ref|YP_004617009.1| - 0.09 12.7 0.2 0.28 11.1 0.2 1.8 1 0 0 1 1 1 0 AAA domain DUF1611 PF07755.11 gi|336477868|ref|YP_004617009.1| - 0.11 11.7 0.1 0.4 9.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain DUF4894 PF16235.5 gi|336477868|ref|YP_004617009.1| - 0.14 12.5 0.6 1.6 9.1 0.0 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF4894) LpxK PF02606.14 gi|336477868|ref|YP_004617009.1| - 0.28 10.3 0.7 0.63 9.1 0.4 1.7 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_22 PF13401.6 gi|336477868|ref|YP_004617009.1| - 0.46 10.8 3.2 10 6.4 0.1 2.6 2 1 0 2 2 2 0 AAA domain RACo_C_ter PF14574.6 gi|336477869|ref|YP_004617010.1| - 7e-73 244.9 1.3 1.1e-72 244.3 1.3 1.3 1 0 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|336477869|ref|YP_004617010.1| - 5.3e-10 39.2 0.2 3.9e-09 36.4 0.0 2.6 3 0 0 3 3 3 1 RACo middle region Fer4_7 PF12838.7 gi|336477869|ref|YP_004617010.1| - 2.1e-05 25.0 7.2 4.9e-05 23.8 7.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|336477869|ref|YP_004617010.1| - 3.8e-05 23.7 4.2 7e-05 22.9 4.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336477869|ref|YP_004617010.1| - 3.9e-05 24.5 11.1 0.00015 22.6 1.4 2.7 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|336477869|ref|YP_004617010.1| - 0.0001 22.4 10.5 0.00021 21.3 10.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336477869|ref|YP_004617010.1| - 0.00041 20.3 11.8 0.04 14.0 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336477869|ref|YP_004617010.1| - 0.00043 20.4 10.8 0.0015 18.7 11.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336477869|ref|YP_004617010.1| - 0.0017 18.1 4.5 0.0017 18.1 4.5 2.6 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336477869|ref|YP_004617010.1| - 0.0039 17.3 12.5 0.017 15.3 12.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336477869|ref|YP_004617010.1| - 0.0044 17.0 11.6 0.18 12.0 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336477869|ref|YP_004617010.1| - 0.018 15.6 5.3 0.09 13.3 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336477869|ref|YP_004617010.1| - 0.044 14.2 3.7 0.29 11.6 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336477869|ref|YP_004617010.1| - 0.066 14.2 13.9 0.59 11.2 3.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336477869|ref|YP_004617010.1| - 0.21 12.2 11.9 1.7 9.3 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain URO-D PF01208.17 gi|336477870|ref|YP_004617011.1| - 8.8e-89 298.0 0.1 9.8e-89 297.9 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) tRNA-synt_1e PF01406.19 gi|336477871|ref|YP_004617012.1| - 5.4e-78 262.4 0.1 8.3e-78 261.8 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|336477871|ref|YP_004617012.1| - 1.3e-12 47.2 0.1 2.1e-06 26.7 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|336477871|ref|YP_004617012.1| - 5.4e-06 25.6 0.1 0.0016 17.4 0.2 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) DALR_2 PF09190.11 gi|336477871|ref|YP_004617012.1| - 0.0035 17.8 0.1 0.017 15.6 0.0 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1c PF00749.21 gi|336477871|ref|YP_004617012.1| - 0.0046 15.9 1.3 0.023 13.6 0.1 2.2 2 1 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1 PF00133.22 gi|336477871|ref|YP_004617012.1| - 0.008 14.5 0.0 0.014 13.7 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1b PF00579.25 gi|336477871|ref|YP_004617012.1| - 0.023 14.0 0.3 0.044 13.1 0.3 1.5 1 1 0 1 1 1 0 tRNA synthetases class I (W and Y) DUF16 PF01519.16 gi|336477871|ref|YP_004617012.1| - 0.064 13.8 0.7 0.19 12.2 0.7 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF16 ABC2_membrane PF01061.24 gi|336477872|ref|YP_004617013.1| - 4.2e-22 78.6 23.6 4.2e-22 78.6 23.6 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|336477872|ref|YP_004617013.1| - 3.2e-08 33.1 35.6 4.1e-08 32.7 35.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein FeThRed_B PF02943.15 gi|336477873|ref|YP_004617014.1| - 3.1e-29 101.1 2.5 3.4e-29 101.0 2.5 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Glutaredoxin PF00462.24 gi|336477874|ref|YP_004617015.1| - 7.6e-12 45.3 0.0 9.8e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 gi|336477874|ref|YP_004617015.1| - 3.2e-06 27.5 0.0 3.9e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|336477874|ref|YP_004617015.1| - 0.004 17.4 0.0 0.0054 17.0 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|336477874|ref|YP_004617015.1| - 0.013 15.9 0.0 0.016 15.5 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain RnfC_N PF13375.6 gi|336477874|ref|YP_004617015.1| - 0.026 14.5 0.0 0.029 14.3 0.0 1.1 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain Csd3_N PF18059.1 gi|336477874|ref|YP_004617015.1| - 0.041 14.4 0.0 0.055 14.0 0.0 1.3 1 0 0 1 1 1 0 Csd3 N-terminal DUF1462 PF07315.11 gi|336477874|ref|YP_004617015.1| - 0.046 14.0 0.0 0.053 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1462) Lar_restr_allev PF14354.6 gi|336477874|ref|YP_004617015.1| - 0.052 13.9 0.1 0.055 13.9 0.1 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar Thioredoxin_3 PF13192.6 gi|336477874|ref|YP_004617015.1| - 0.057 13.5 0.1 0.089 12.9 0.1 1.3 1 1 0 1 1 1 0 Thioredoxin domain Channel_Tsx PF03502.13 gi|336477874|ref|YP_004617015.1| - 0.071 12.8 0.0 0.082 12.6 0.0 1.0 1 0 0 1 1 1 0 Nucleoside-specific channel-forming protein, Tsx Rieske PF00355.26 gi|336477875|ref|YP_004617016.1| - 9.5e-21 73.6 0.0 1.2e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|336477875|ref|YP_004617016.1| - 1.4e-14 53.8 0.0 1.7e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain DUF1644 PF07800.12 gi|336477875|ref|YP_004617016.1| - 0.037 14.1 0.0 0.054 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1644) Thioredox_DsbH PF03190.15 gi|336477876|ref|YP_004617017.1| - 1.2e-71 240.0 0.2 2.4e-71 239.0 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|336477876|ref|YP_004617017.1| - 3.9e-10 39.8 0.1 1.3e-09 38.1 0.1 1.9 2 0 0 2 2 2 1 Thioredoxin-like Glyco_hydro_88 PF07470.13 gi|336477876|ref|YP_004617017.1| - 2.1e-07 30.3 1.4 0.0041 16.2 0.1 2.4 2 0 0 2 2 2 2 Glycosyl Hydrolase Family 88 GlcNAc_2-epim PF07221.11 gi|336477876|ref|YP_004617017.1| - 0.00012 21.5 1.6 0.73 9.0 0.4 3.0 2 2 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|336477876|ref|YP_004617017.1| - 0.00016 21.3 2.0 0.21 11.1 0.1 2.8 2 1 0 2 2 2 2 Glycosyl hydrolase family 76 Glyco_hydro_9 PF00759.19 gi|336477876|ref|YP_004617017.1| - 0.00017 21.2 0.4 0.0018 17.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl hydrolase family 9 LANC_like PF05147.13 gi|336477876|ref|YP_004617017.1| - 0.00033 19.3 1.7 0.51 8.8 0.0 4.0 3 1 0 3 3 3 1 Lanthionine synthetase C-like protein C5-epim_C PF06662.13 gi|336477876|ref|YP_004617017.1| - 0.0014 18.1 6.5 0.052 13.0 0.5 3.8 2 2 1 3 3 3 1 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_47 PF01532.20 gi|336477876|ref|YP_004617017.1| - 0.0055 15.7 0.2 0.26 10.2 0.0 2.3 2 0 0 2 2 2 1 Glycosyl hydrolase family 47 DHBP_synthase PF00926.19 gi|336477877|ref|YP_004617018.1| - 5.6e-55 185.9 0.0 6.7e-55 185.6 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.16 gi|336477878|ref|YP_004617019.1| - 9.2e-45 151.6 0.0 1.4e-44 151.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.22 gi|336477878|ref|YP_004617019.1| - 0.00034 20.5 0.1 0.00063 19.6 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|336477878|ref|YP_004617019.1| - 0.0044 17.0 0.0 0.0088 16.0 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_45 PF14947.6 gi|336477878|ref|YP_004617019.1| - 0.013 15.4 0.0 0.037 14.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_12 PF08461.10 gi|336477878|ref|YP_004617019.1| - 0.026 14.5 0.0 0.064 13.2 0.0 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HxlR PF01638.17 gi|336477878|ref|YP_004617019.1| - 0.084 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF4364 PF14277.6 gi|336477878|ref|YP_004617019.1| - 0.097 12.4 0.4 1.5 8.5 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4364) SelB-wing_3 PF09107.11 gi|336477878|ref|YP_004617019.1| - 0.13 11.9 0.1 0.57 9.9 0.0 2.0 2 0 0 2 2 2 0 Elongation factor SelB, winged helix Rrf2 PF02082.20 gi|336477878|ref|YP_004617019.1| - 0.13 12.6 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Fibrillarin PF01269.17 gi|336477879|ref|YP_004617020.1| - 4.9e-87 290.8 0.1 5.3e-87 290.7 0.1 1.0 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.12 gi|336477879|ref|YP_004617020.1| - 0.0059 15.7 0.0 0.014 14.5 0.0 1.6 1 1 1 2 2 2 1 DREV methyltransferase Nop PF01798.18 gi|336477880|ref|YP_004617021.1| - 6.2e-55 186.2 0.0 8.9e-55 185.7 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin GHMP_kinases_C PF08544.13 gi|336477881|ref|YP_004617022.1| - 4.8e-10 39.7 0.1 1.2e-09 38.4 0.0 1.7 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|336477881|ref|YP_004617022.1| - 5.3e-07 29.8 2.1 1.6e-06 28.3 2.1 1.9 1 0 0 1 1 1 1 GHMP kinases N terminal domain Pyr_redox_2 PF07992.14 gi|336477882|ref|YP_004617023.1| - 1.7e-42 145.6 0.0 2.4e-42 145.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|336477882|ref|YP_004617023.1| - 2.4e-21 76.1 0.0 4.1e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|336477882|ref|YP_004617023.1| - 2.3e-11 44.1 0.0 5.2e-11 43.0 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336477882|ref|YP_004617023.1| - 4.7e-09 35.9 0.0 8.2e-09 35.1 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|336477882|ref|YP_004617023.1| - 7.3e-09 35.2 0.0 0.00016 20.9 0.0 3.0 2 1 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|336477882|ref|YP_004617023.1| - 0.11 13.0 0.0 0.29 11.6 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding OrfB_IS605 PF01385.19 gi|336477883|ref|YP_004617024.1| - 1.2e-26 93.2 1.4 2.5e-26 92.3 1.4 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|336477883|ref|YP_004617024.1| - 4.4e-21 74.6 0.4 9e-21 73.6 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|336477883|ref|YP_004617024.1| - 9.6e-19 66.6 0.1 3.4e-18 64.9 0.4 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain zinc_ribbon_10 PF10058.9 gi|336477883|ref|YP_004617024.1| - 0.018 14.8 1.4 0.037 13.7 1.4 1.5 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein M_domain PF12938.7 gi|336477883|ref|YP_004617024.1| - 0.018 14.8 2.4 0.031 14.1 2.4 1.4 1 0 0 1 1 1 0 M domain of GW182 zf-piccolo PF05715.13 gi|336477883|ref|YP_004617024.1| - 0.055 13.6 1.1 0.11 12.7 1.1 1.4 1 0 0 1 1 1 0 Piccolo Zn-finger Zn_Tnp_IS1595 PF12760.7 gi|336477883|ref|YP_004617024.1| - 0.18 11.8 1.0 0.33 11.0 1.0 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-RanBP PF00641.18 gi|336477883|ref|YP_004617024.1| - 7.7 5.9 7.5 11 5.5 1.5 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others CS PF04969.16 gi|336477884|ref|YP_004617025.1| - 0.00061 20.8 0.0 0.00069 20.6 0.0 1.1 1 0 0 1 1 1 1 CS domain HSP20 PF00011.21 gi|336477884|ref|YP_004617025.1| - 0.049 13.8 0.0 1.2 9.3 0.1 2.0 1 1 1 2 2 2 0 Hsp20/alpha crystallin family 4HPAD_g_N PF18671.1 gi|336477884|ref|YP_004617025.1| - 0.11 12.2 0.2 0.18 11.5 0.2 1.3 1 0 0 1 1 1 0 4-Hydroxyphenylacetate decarboxylase subunit gamma N-terminal Helicase_C_2 PF13307.6 gi|336477885|ref|YP_004617026.1| - 1.1e-29 103.7 0.5 5.1e-29 101.6 0.0 2.2 3 0 0 3 3 3 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|336477885|ref|YP_004617026.1| - 1.9e-17 63.4 1.3 7.3e-17 61.5 1.3 1.9 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|336477885|ref|YP_004617026.1| - 1.4e-07 31.4 0.1 1.9e-05 24.5 0.0 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|336477885|ref|YP_004617026.1| - 5.9e-06 26.4 1.2 0.00069 19.7 0.2 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|336477885|ref|YP_004617026.1| - 3.1e-05 23.5 0.1 0.00041 19.9 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein DUF2075 PF09848.9 gi|336477885|ref|YP_004617026.1| - 0.0053 16.0 0.1 0.24 10.6 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|336477885|ref|YP_004617026.1| - 0.0089 16.5 5.4 2.5 8.5 0.0 3.7 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|336477885|ref|YP_004617026.1| - 0.01 15.2 0.0 0.022 14.1 0.0 1.6 1 0 0 1 1 1 1 KaiC AAA_30 PF13604.6 gi|336477885|ref|YP_004617026.1| - 0.062 13.0 0.1 0.21 11.3 0.1 1.9 1 0 0 1 1 1 0 AAA domain Methyltransf_25 PF13649.6 gi|336477885|ref|YP_004617026.1| - 0.065 13.9 0.0 0.77 10.5 0.0 2.7 2 0 0 2 2 2 0 Methyltransferase domain Sigma54_activat PF00158.26 gi|336477885|ref|YP_004617026.1| - 0.077 12.7 0.0 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain Zot PF05707.12 gi|336477885|ref|YP_004617026.1| - 0.13 11.9 0.1 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) HK PF02110.15 gi|336477885|ref|YP_004617026.1| - 0.14 11.5 0.0 0.32 10.4 0.0 1.5 1 0 0 1 1 1 0 Hydroxyethylthiazole kinase family Pardaxin PF07425.11 gi|336477885|ref|YP_004617026.1| - 0.18 11.4 0.1 0.62 9.7 0.1 1.9 1 0 0 1 1 1 0 Pardaxin AAA_11 PF13086.6 gi|336477885|ref|YP_004617026.1| - 1.2 8.9 4.0 14 5.3 4.2 2.3 1 1 0 1 1 1 0 AAA domain Pilin_N PF07790.11 gi|336477886|ref|YP_004617027.1| - 2e-09 38.2 3.2 2.1e-09 38.1 1.7 1.9 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Fer4 PF00037.27 gi|336477887|ref|YP_004617028.1| - 1.3e-19 69.1 20.6 2.2e-10 39.9 5.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336477887|ref|YP_004617028.1| - 6.4e-16 57.7 19.4 5.7e-09 35.7 4.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336477887|ref|YP_004617028.1| - 2.8e-13 49.8 20.3 2e-10 40.7 10.5 1.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336477887|ref|YP_004617028.1| - 5.8e-13 48.1 16.6 2.5e-06 27.3 5.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336477887|ref|YP_004617028.1| - 5.3e-12 46.1 11.0 1.3e-11 44.9 11.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336477887|ref|YP_004617028.1| - 7e-12 45.3 14.7 6e-06 26.3 3.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336477887|ref|YP_004617028.1| - 6.2e-11 42.3 12.2 7.2e-11 42.1 12.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336477887|ref|YP_004617028.1| - 2.8e-10 41.0 10.3 4.6e-05 24.3 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|336477887|ref|YP_004617028.1| - 2.7e-09 36.8 14.7 6.8e-05 23.1 3.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|336477887|ref|YP_004617028.1| - 3.2e-07 30.8 18.9 0.00077 20.2 6.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|336477887|ref|YP_004617028.1| - 6.6e-05 23.7 5.6 0.045 14.6 0.8 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336477887|ref|YP_004617028.1| - 7.8e-05 23.1 12.9 0.0098 16.4 2.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|336477887|ref|YP_004617028.1| - 8.4e-05 22.6 5.0 8.7e-05 22.6 5.0 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336477887|ref|YP_004617028.1| - 9.1e-05 22.8 13.0 0.024 15.1 1.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|336477887|ref|YP_004617028.1| - 0.00015 22.4 20.5 0.0097 16.6 6.0 3.2 1 1 2 3 3 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|336477887|ref|YP_004617028.1| - 0.0004 20.9 20.6 0.1 13.2 5.7 3.0 2 2 1 3 3 3 3 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|336477887|ref|YP_004617028.1| - 0.01 16.0 13.8 0.035 14.3 13.8 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain RLI PF04068.15 gi|336477887|ref|YP_004617028.1| - 0.03 14.1 3.8 11 5.9 0.0 3.6 4 0 0 4 4 4 0 Possible Fer4-like domain in RNase L inhibitor, RLI Semialdhyde_dhC PF02774.18 gi|336477888|ref|YP_004617029.1| - 1.5e-37 129.5 0.0 2.4e-37 128.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|336477888|ref|YP_004617029.1| - 4.8e-34 117.4 0.0 7.9e-34 116.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 gi|336477888|ref|YP_004617029.1| - 0.0037 18.0 0.0 0.0069 17.1 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.6 gi|336477888|ref|YP_004617029.1| - 0.0046 16.9 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding DapB_N PF01113.20 gi|336477888|ref|YP_004617029.1| - 0.015 15.4 0.0 0.026 14.7 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AA_kinase PF00696.28 gi|336477890|ref|YP_004617031.1| - 6.2e-31 107.8 1.6 1.2e-30 106.9 1.6 1.4 1 1 0 1 1 1 1 Amino acid kinase family SKI PF01202.22 gi|336477890|ref|YP_004617031.1| - 0.0077 16.4 0.3 0.026 14.6 0.1 2.1 1 1 1 2 2 2 1 Shikimate kinase His_biosynth PF00977.21 gi|336477890|ref|YP_004617031.1| - 0.044 13.2 0.1 0.1 12.0 0.1 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein AlaDh_PNT_C PF01262.21 gi|336477890|ref|YP_004617031.1| - 1.8 7.8 6.4 1.8 7.8 3.4 2.3 2 1 1 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain IF-2B PF01008.17 gi|336477891|ref|YP_004617032.1| - 1.8e-86 289.9 3.5 2e-86 289.7 3.5 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family LUD_dom PF02589.15 gi|336477891|ref|YP_004617032.1| - 0.0093 15.7 2.0 0.022 14.5 2.0 1.9 1 1 0 1 1 1 1 LUD domain Aldedh PF00171.22 gi|336477892|ref|YP_004617033.1| - 2.9e-140 467.8 0.0 3.3e-140 467.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Met_10 PF02475.16 gi|336477893|ref|YP_004617034.1| - 1.4e-44 152.3 0.0 1.7e-44 152.0 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein UPF0020 PF01170.18 gi|336477893|ref|YP_004617034.1| - 8.3e-05 22.4 0.0 0.062 13.0 0.0 2.3 1 1 1 2 2 2 2 Putative RNA methylase family UPF0020 TRM PF02005.16 gi|336477893|ref|YP_004617034.1| - 0.00013 21.3 0.1 0.00015 21.1 0.1 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|336477893|ref|YP_004617034.1| - 0.00043 19.9 0.0 0.00075 19.1 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltr_RsmB-F PF01189.17 gi|336477893|ref|YP_004617034.1| - 0.0016 18.1 0.1 0.0061 16.2 0.1 1.8 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|336477893|ref|YP_004617034.1| - 0.0074 15.8 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|336477893|ref|YP_004617034.1| - 0.014 15.0 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PrmA PF06325.13 gi|336477893|ref|YP_004617034.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|336477893|ref|YP_004617034.1| - 0.12 13.0 0.0 1.4 9.7 0.0 2.5 1 1 1 2 2 2 0 Methyltransferase domain tRNA_deacylase PF04414.12 gi|336477894|ref|YP_004617035.1| - 1.3e-67 227.3 0.0 1.9e-67 226.7 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Tubulin PF00091.25 gi|336477895|ref|YP_004617036.1| - 2.1e-38 132.5 0.1 3.3e-38 131.9 0.1 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|336477895|ref|YP_004617036.1| - 9.8e-36 122.0 0.8 2.7e-35 120.6 0.8 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 gi|336477895|ref|YP_004617036.1| - 4.9 6.3 8.2 0.66 9.1 2.3 2.2 1 1 0 2 2 2 0 Tubulin like SecE PF00584.20 gi|336477896|ref|YP_004617037.1| - 3.3e-06 26.9 0.4 3.4e-06 26.9 0.4 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex ETRAMP PF09716.10 gi|336477896|ref|YP_004617037.1| - 0.05 13.7 1.7 0.11 12.6 1.8 1.6 1 1 1 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Spt5-NGN PF03439.13 gi|336477897|ref|YP_004617038.1| - 5.9e-25 87.0 0.1 8.7e-25 86.4 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|336477897|ref|YP_004617038.1| - 1.5e-06 27.9 1.3 1.6e-05 24.7 0.2 2.3 2 0 0 2 2 2 1 KOW motif Ribosomal_L11_N PF03946.14 gi|336477898|ref|YP_004617039.1| - 1e-24 86.1 0.5 1.8e-24 85.4 0.5 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|336477898|ref|YP_004617039.1| - 6.3e-20 71.5 0.4 1e-19 70.8 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|336477899|ref|YP_004617040.1| - 8.2e-48 162.8 0.0 9.9e-48 162.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|336477900|ref|YP_004617041.1| - 2.4e-24 85.3 1.3 5.4e-24 84.2 0.2 2.0 2 0 0 2 2 2 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|336477900|ref|YP_004617041.1| - 8.8e-20 70.5 0.2 1.6e-19 69.6 0.2 1.4 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|336477900|ref|YP_004617041.1| - 9.2e-05 23.0 20.0 0.00051 20.6 17.9 2.7 2 1 0 2 2 2 1 60s Acidic ribosomal protein PmbA_TldD PF01523.16 gi|336477900|ref|YP_004617041.1| - 0.063 13.1 2.2 0.33 10.8 0.2 2.5 1 1 1 3 3 3 0 Putative modulator of DNA gyrase DDHD PF02862.17 gi|336477900|ref|YP_004617041.1| - 0.084 13.0 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 DDHD domain Phage_SSB PF16773.5 gi|336477900|ref|YP_004617041.1| - 0.1 12.6 0.2 0.3 11.1 0.2 1.7 1 1 1 2 2 2 0 Lactococcus phage single-stranded DNA binding protein Ribosomal_60s PF00428.19 gi|336477901|ref|YP_004617042.1| - 4e-19 69.0 22.3 4.7e-19 68.8 22.3 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein Sigma70_ner PF04546.13 gi|336477901|ref|YP_004617042.1| - 0.02 14.8 2.8 0.024 14.5 2.8 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF1631 PF07793.11 gi|336477901|ref|YP_004617042.1| - 0.43 8.9 5.9 0.5 8.7 5.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) Radical_SAM PF04055.21 gi|336477902|ref|YP_004617043.1| - 1.4e-15 58.1 0.5 6.2e-15 56.0 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily DUF3463 PF11946.8 gi|336477902|ref|YP_004617043.1| - 4.9e-06 26.4 0.1 8.2e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) SPASM PF13186.6 gi|336477902|ref|YP_004617043.1| - 4.5e-05 23.9 0.7 0.00015 22.2 0.7 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|336477902|ref|YP_004617043.1| - 0.019 15.2 0.1 0.071 13.4 0.1 1.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain ChuX_HutX PF06228.13 gi|336477902|ref|YP_004617043.1| - 0.17 11.7 0.0 0.35 10.6 0.0 1.5 1 0 0 1 1 1 0 Haem utilisation ChuX/HutX SAM_adeno_trans PF01887.16 gi|336477903|ref|YP_004617044.1| - 1.3e-79 267.0 0.2 1.4e-79 266.8 0.2 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase ThiC_Rad_SAM PF01964.18 gi|336477904|ref|YP_004617045.1| - 2.7e-172 573.3 0.8 3.1e-172 573.1 0.8 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Glycos_transf_2 PF00535.26 gi|336477905|ref|YP_004617046.1| - 3.7e-18 65.9 0.0 5.2e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|336477905|ref|YP_004617046.1| - 6.4e-06 26.2 0.0 9.2e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|336477905|ref|YP_004617046.1| - 0.00019 21.8 0.0 0.00048 20.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|336477905|ref|YP_004617046.1| - 0.032 14.6 0.0 0.042 14.2 0.0 1.2 1 0 0 1 1 1 0 MobA-like NTP transferase domain Bmp PF02608.14 gi|336477905|ref|YP_004617046.1| - 0.069 12.1 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter substrate-binding protein PnrA-like Phage_holin_1 PF04531.13 gi|336477905|ref|YP_004617046.1| - 0.19 12.3 0.4 0.34 11.5 0.4 1.4 1 0 0 1 1 1 0 Bacteriophage holin TBP PF00352.21 gi|336477906|ref|YP_004617047.1| - 3.4e-57 190.3 0.2 8.6e-28 96.1 0.2 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|336477906|ref|YP_004617047.1| - 3.4e-08 33.5 0.0 0.005 16.9 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) NdhS PF11623.8 gi|336477906|ref|YP_004617047.1| - 0.0049 16.5 0.0 1.1 8.9 0.0 2.5 2 0 0 2 2 2 2 NAD(P)H dehydrogenase subunit S Auxin_resp PF06507.13 gi|336477906|ref|YP_004617047.1| - 0.12 12.7 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Auxin response factor SMC_ScpB PF04079.16 gi|336477907|ref|YP_004617048.1| - 1.7e-39 135.0 0.2 3e-38 131.0 0.0 2.5 3 0 0 3 3 3 1 Segregation and condensation complex subunit ScpB TrmB PF01978.19 gi|336477907|ref|YP_004617048.1| - 4.6e-05 23.2 0.1 0.22 11.4 0.0 2.7 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|336477907|ref|YP_004617048.1| - 0.013 15.5 0.0 0.04 14.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|336477907|ref|YP_004617048.1| - 0.028 14.0 0.1 4.6 6.9 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Nore1-SARAH PF16517.5 gi|336477907|ref|YP_004617048.1| - 0.97 9.4 2.8 3.9 7.5 0.0 3.0 3 0 0 3 3 3 0 Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain SMC_ScpA PF02616.14 gi|336477908|ref|YP_004617049.1| - 2.2e-24 86.7 2.0 3.6e-13 50.0 0.3 2.1 2 0 0 2 2 2 2 Segregation and condensation protein ScpA Cnd2 PF05786.14 gi|336477908|ref|YP_004617049.1| - 0.001 17.9 0.0 0.0015 17.3 0.0 1.4 1 0 0 1 1 1 1 Condensin complex subunit 2 Rad21_Rec8 PF04824.16 gi|336477908|ref|YP_004617049.1| - 0.038 13.3 0.0 0.092 12.0 0.0 1.6 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein SMC_N PF02463.19 gi|336477909|ref|YP_004617050.1| - 6.6e-74 248.0 0.3 1.3e-73 247.1 0.3 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|336477909|ref|YP_004617050.1| - 5.6e-33 113.7 0.0 1.6e-32 112.3 0.0 1.9 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|336477909|ref|YP_004617050.1| - 1.9e-14 54.6 13.8 1.9e-14 54.6 13.8 7.3 2 2 2 4 4 2 1 AAA domain AAA_15 PF13175.6 gi|336477909|ref|YP_004617050.1| - 8.9e-11 42.1 15.8 8.9e-11 42.1 15.8 4.7 2 2 0 2 2 1 1 AAA ATPase domain Spc7 PF08317.11 gi|336477909|ref|YP_004617050.1| - 1.4e-10 40.5 109.8 0.0013 17.7 18.8 8.0 2 2 5 7 7 7 6 Spc7 kinetochore protein MscS_porin PF12795.7 gi|336477909|ref|YP_004617050.1| - 2.1e-09 37.3 74.3 0.00077 19.1 15.9 5.6 2 2 3 5 5 5 4 Mechanosensitive ion channel porin domain AAA_21 PF13304.6 gi|336477909|ref|YP_004617050.1| - 4.1e-08 33.4 1.4 0.00015 21.7 0.1 4.6 3 1 0 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system EzrA PF06160.12 gi|336477909|ref|YP_004617050.1| - 3.3e-07 28.9 95.4 0.0049 15.1 41.5 4.2 2 2 0 2 2 2 2 Septation ring formation regulator, EzrA IFT57 PF10498.9 gi|336477909|ref|YP_004617050.1| - 2.8e-06 26.6 84.0 0.0088 15.0 10.6 6.4 2 2 5 7 7 7 5 Intra-flagellar transport protein 57 AAA_29 PF13555.6 gi|336477909|ref|YP_004617050.1| - 3.7e-06 26.6 0.0 7.8e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain CENP-F_leu_zip PF10473.9 gi|336477909|ref|YP_004617050.1| - 6.1e-06 26.3 119.0 0.032 14.3 17.5 8.6 3 2 5 8 8 8 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PspA_IM30 PF04012.12 gi|336477909|ref|YP_004617050.1| - 1.4e-05 24.8 24.9 0.0001 21.9 5.9 7.0 3 2 2 5 5 4 2 PspA/IM30 family AAA_13 PF13166.6 gi|336477909|ref|YP_004617050.1| - 2.3e-05 23.3 88.7 0.00015 20.6 16.9 4.8 3 2 2 5 5 5 3 AAA domain Lebercilin PF15619.6 gi|336477909|ref|YP_004617050.1| - 3.1e-05 23.7 27.2 3.1e-05 23.7 27.2 5.9 2 2 3 5 5 3 1 Ciliary protein causing Leber congenital amaurosis disease TPR_MLP1_2 PF07926.12 gi|336477909|ref|YP_004617050.1| - 3.3e-05 23.9 100.5 0.032 14.3 9.3 8.3 2 2 3 8 8 8 5 TPR/MLP1/MLP2-like protein Uso1_p115_C PF04871.13 gi|336477909|ref|YP_004617050.1| - 8e-05 23.0 11.5 8e-05 23.0 11.5 8.1 3 2 6 9 9 9 1 Uso1 / p115 like vesicle tethering protein, C terminal region APG6_N PF17675.1 gi|336477909|ref|YP_004617050.1| - 0.0001 22.9 126.5 0.021 15.3 12.5 9.9 2 2 8 10 10 9 3 Apg6 coiled-coil region DUF1664 PF07889.12 gi|336477909|ref|YP_004617050.1| - 0.00013 22.0 72.7 0.008 16.2 3.6 9.9 2 2 7 11 11 11 5 Protein of unknown function (DUF1664) Filament PF00038.21 gi|336477909|ref|YP_004617050.1| - 0.00014 21.6 99.6 0.048 13.2 21.7 6.1 2 2 0 4 4 4 2 Intermediate filament protein T3SSipB PF16535.5 gi|336477909|ref|YP_004617050.1| - 0.00016 22.2 47.7 0.013 16.0 2.8 7.0 2 2 3 6 6 6 2 Type III cell invasion protein SipB TolA_bind_tri PF16331.5 gi|336477909|ref|YP_004617050.1| - 0.00083 19.4 0.5 0.00083 19.4 0.5 9.7 8 3 1 9 9 7 2 TolA binding protein trimerisation ATG16 PF08614.11 gi|336477909|ref|YP_004617050.1| - 0.00087 19.6 105.1 0.079 13.2 8.8 7.3 2 2 3 6 6 6 3 Autophagy protein 16 (ATG16) Nup88 PF10168.9 gi|336477909|ref|YP_004617050.1| - 0.00093 17.1 19.1 0.00093 17.1 19.1 4.8 2 2 2 5 5 5 1 Nuclear pore component Tropomyosin_1 PF12718.7 gi|336477909|ref|YP_004617050.1| - 0.0011 19.1 12.7 0.0011 19.1 12.7 8.3 2 2 5 8 8 7 1 Tropomyosin like Golgin_A5 PF09787.9 gi|336477909|ref|YP_004617050.1| - 0.0015 18.1 12.8 0.0015 18.1 12.8 6.6 3 2 5 8 8 6 3 Golgin subfamily A member 5 FliJ PF02050.16 gi|336477909|ref|YP_004617050.1| - 0.0024 18.1 72.0 0.43 10.8 4.3 8.5 3 2 6 9 9 9 3 Flagellar FliJ protein DUF3584 PF12128.8 gi|336477909|ref|YP_004617050.1| - 0.0028 15.3 96.9 0.0014 16.2 41.1 4.3 2 2 2 4 4 4 3 Protein of unknown function (DUF3584) CCDC-167 PF15188.6 gi|336477909|ref|YP_004617050.1| - 0.0051 17.1 7.8 0.0051 17.1 7.8 11.0 4 3 4 9 9 6 1 Coiled-coil domain-containing protein 167 DUF724 PF05266.14 gi|336477909|ref|YP_004617050.1| - 0.0057 16.5 96.8 0.029 14.2 10.7 8.0 3 2 5 8 8 8 3 Protein of unknown function (DUF724) DHR10 PF18595.1 gi|336477909|ref|YP_004617050.1| - 0.0068 16.4 6.6 0.0068 16.4 6.6 9.5 5 2 4 9 9 8 1 Designed helical repeat protein 10 domain Laminin_I PF06008.14 gi|336477909|ref|YP_004617050.1| - 0.016 14.9 77.0 0.019 14.6 12.4 5.9 2 2 4 6 6 6 0 Laminin Domain I Baculo_PEP_C PF04513.12 gi|336477909|ref|YP_004617050.1| - 0.022 14.8 33.6 0.47 10.5 1.2 7.2 4 3 3 7 7 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.6 gi|336477909|ref|YP_004617050.1| - 0.048 13.0 108.5 0.0089 15.4 19.3 7.9 2 2 6 9 9 9 0 Growth-arrest specific micro-tubule binding Ribosomal_S15 PF00312.22 gi|336477909|ref|YP_004617050.1| - 0.062 13.5 9.2 0.25 11.6 0.3 4.6 2 1 0 3 3 3 0 Ribosomal protein S15 Laminin_II PF06009.12 gi|336477909|ref|YP_004617050.1| - 0.078 13.0 71.1 0.73 9.9 8.1 8.3 4 2 7 11 11 10 0 Laminin Domain II DUF4200 PF13863.6 gi|336477909|ref|YP_004617050.1| - 0.13 12.7 114.5 0.27 11.6 14.5 9.0 4 2 5 9 9 9 0 Domain of unknown function (DUF4200) DUF812 PF05667.11 gi|336477909|ref|YP_004617050.1| - 0.15 10.9 99.0 0.068 12.1 9.4 5.9 2 2 4 6 6 6 0 Protein of unknown function (DUF812) Sec8_exocyst PF04048.14 gi|336477909|ref|YP_004617050.1| - 0.37 10.7 46.9 2.1 8.3 2.3 7.2 4 2 1 6 6 6 0 Sec8 exocyst complex component specific domain TACC_C PF05010.14 gi|336477909|ref|YP_004617050.1| - 0.49 10.1 85.0 0.21 11.4 13.0 6.3 2 2 4 6 6 6 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal MtrB PF05440.12 gi|336477909|ref|YP_004617050.1| - 0.52 10.8 11.8 22 5.6 0.1 5.3 5 1 0 5 5 3 0 Tetrahydromethanopterin S-methyltransferase subunit B TMPIT PF07851.13 gi|336477909|ref|YP_004617050.1| - 0.79 8.9 71.8 0.098 11.9 6.3 7.2 2 2 6 8 8 8 0 TMPIT-like protein Atg14 PF10186.9 gi|336477909|ref|YP_004617050.1| - 0.9 8.6 98.0 0.025 13.7 15.1 6.4 2 2 5 7 7 7 0 Vacuolar sorting 38 and autophagy-related subunit 14 Fib_alpha PF08702.10 gi|336477909|ref|YP_004617050.1| - 1.6 9.0 80.9 0.44 10.7 2.4 8.5 3 2 6 10 10 10 0 Fibrinogen alpha/beta chain family Fez1 PF06818.15 gi|336477909|ref|YP_004617050.1| - 1.9 8.9 99.9 0.089 13.2 15.2 6.5 2 2 4 6 6 6 0 Fez1 Sec34 PF04136.15 gi|336477909|ref|YP_004617050.1| - 2.3 8.1 62.9 0.18 11.7 0.7 8.8 4 3 6 11 11 10 0 Sec34-like family NPV_P10 PF05531.12 gi|336477909|ref|YP_004617050.1| - 3.1 8.3 46.1 0.67 10.4 1.4 9.2 6 4 0 8 8 8 0 Nucleopolyhedrovirus P10 protein DUF948 PF06103.11 gi|336477909|ref|YP_004617050.1| - 3.3 8.0 37.3 0.48 10.7 2.8 9.1 4 3 5 9 9 9 0 Bacterial protein of unknown function (DUF948) Occludin_ELL PF07303.13 gi|336477909|ref|YP_004617050.1| - 3.7 8.3 64.2 0.39 11.5 1.7 9.6 2 2 6 10 10 10 0 Occludin homology domain DUF5082 PF16888.5 gi|336477909|ref|YP_004617050.1| - 3.9 7.8 87.0 0.25 11.6 8.0 8.0 2 2 6 8 8 7 0 Domain of unknown function (DUF5082) DASH_Dam1 PF08653.10 gi|336477909|ref|YP_004617050.1| - 4.7 7.1 16.3 10 6.0 0.4 6.1 6 0 0 6 6 4 0 DASH complex subunit Dam1 DUF4407 PF14362.6 gi|336477909|ref|YP_004617050.1| - 8.8 5.6 72.5 0.92 8.8 12.6 5.6 2 2 2 4 4 3 0 Domain of unknown function (DUF4407) Bacillus_HBL PF05791.11 gi|336477910|ref|YP_004617051.1| - 0.00082 19.2 0.5 0.0013 18.6 0.5 1.2 1 0 0 1 1 1 1 Bacillus haemolytic enterotoxin (HBL) SPATA24 PF15175.6 gi|336477910|ref|YP_004617051.1| - 0.025 14.5 3.1 0.042 13.7 3.1 1.3 1 0 0 1 1 1 0 Spermatogenesis-associated protein 24 Spore_II_R PF09551.10 gi|336477910|ref|YP_004617051.1| - 0.045 14.2 0.7 0.045 14.2 0.7 2.3 2 1 0 2 2 2 0 Stage II sporulation protein R (spore_II_R) COG2 PF06148.11 gi|336477910|ref|YP_004617051.1| - 0.049 13.7 2.9 0.088 12.9 2.9 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Angiomotin_C PF12240.8 gi|336477910|ref|YP_004617051.1| - 0.16 11.5 4.8 0.063 12.8 0.5 2.3 2 1 0 2 2 2 0 Angiomotin C terminal TMPIT PF07851.13 gi|336477910|ref|YP_004617051.1| - 0.59 9.3 1.4 0.89 8.7 1.4 1.2 1 0 0 1 1 1 0 TMPIT-like protein SlyX PF04102.12 gi|336477910|ref|YP_004617051.1| - 0.69 10.6 3.5 26 5.5 0.1 2.8 2 0 0 2 2 2 0 SlyX HIP1_clath_bdg PF16515.5 gi|336477910|ref|YP_004617051.1| - 1.5 9.5 8.9 2.8 8.6 1.9 3.2 2 1 1 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF4177 PF13783.6 gi|336477911|ref|YP_004617052.1| - 0.023 15.0 0.3 0.032 14.5 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4177) AAA_23 PF13476.6 gi|336477912|ref|YP_004617053.1| - 5.2e-22 79.3 8.6 5.2e-22 79.3 8.6 6.1 1 1 1 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|336477912|ref|YP_004617053.1| - 5.5e-16 59.2 7.2 5.5e-16 59.2 7.2 3.9 1 1 0 2 2 1 1 AAA ATPase domain SMC_N PF02463.19 gi|336477912|ref|YP_004617053.1| - 2.2e-09 37.1 39.9 3.4e-08 33.2 39.9 2.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|336477912|ref|YP_004617053.1| - 4.5e-07 28.9 68.5 4.2e-06 25.7 20.2 5.0 2 1 3 5 5 5 3 AAA domain AAA_29 PF13555.6 gi|336477912|ref|YP_004617053.1| - 1.1e-06 28.3 0.0 2.1e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|336477912|ref|YP_004617053.1| - 2.4e-06 27.6 18.2 0.00034 20.5 4.2 3.9 3 2 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF5082 PF16888.5 gi|336477912|ref|YP_004617053.1| - 4.9e-06 26.8 72.2 0.004 17.4 16.7 6.8 2 1 4 7 7 7 4 Domain of unknown function (DUF5082) DUF948 PF06103.11 gi|336477912|ref|YP_004617053.1| - 0.00031 20.9 25.5 0.33 11.2 1.0 6.8 3 2 5 8 8 8 2 Bacterial protein of unknown function (DUF948) DUF4200 PF13863.6 gi|336477912|ref|YP_004617053.1| - 0.00048 20.5 94.8 0.21 12.0 15.1 6.9 4 2 3 7 7 7 4 Domain of unknown function (DUF4200) AAA_27 PF13514.6 gi|336477912|ref|YP_004617053.1| - 0.00097 18.8 0.0 0.00097 18.8 0.0 5.2 5 2 2 7 7 6 1 AAA domain Fib_alpha PF08702.10 gi|336477912|ref|YP_004617053.1| - 0.0023 18.1 12.7 0.0023 18.1 12.7 6.9 1 1 4 8 8 8 1 Fibrinogen alpha/beta chain family DUF3450 PF11932.8 gi|336477912|ref|YP_004617053.1| - 0.0034 16.7 8.6 0.0034 16.7 8.6 5.9 2 2 4 6 6 6 2 Protein of unknown function (DUF3450) SbcCD_C PF13558.6 gi|336477912|ref|YP_004617053.1| - 0.0069 16.6 0.0 0.022 15.0 0.0 1.9 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Seryl_tRNA_N PF02403.22 gi|336477912|ref|YP_004617053.1| - 0.009 16.2 5.8 0.009 16.2 5.8 7.4 1 1 7 9 9 8 3 Seryl-tRNA synthetase N-terminal domain CPT PF07931.12 gi|336477912|ref|YP_004617053.1| - 0.013 15.4 0.0 0.034 14.0 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein DUF724 PF05266.14 gi|336477912|ref|YP_004617053.1| - 0.015 15.2 78.9 0.25 11.2 12.6 6.6 1 1 6 7 7 7 0 Protein of unknown function (DUF724) Spc7 PF08317.11 gi|336477912|ref|YP_004617053.1| - 0.022 13.7 86.9 0.014 14.3 20.1 5.4 1 1 4 5 5 5 0 Spc7 kinetochore protein AAA_33 PF13671.6 gi|336477912|ref|YP_004617053.1| - 0.023 14.9 0.2 0.1 12.7 0.0 2.3 2 0 0 2 2 1 0 AAA domain Baculo_PEP_C PF04513.12 gi|336477912|ref|YP_004617053.1| - 0.039 14.0 33.3 0.56 10.2 1.4 6.4 2 2 1 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus ATG16 PF08614.11 gi|336477912|ref|YP_004617053.1| - 0.045 14.0 78.2 0.037 14.3 17.1 6.3 1 1 4 6 6 5 0 Autophagy protein 16 (ATG16) AAA_16 PF13191.6 gi|336477912|ref|YP_004617053.1| - 0.062 13.7 2.5 0.1 13.0 0.0 2.6 2 1 1 3 3 3 0 AAA ATPase domain MbeD_MobD PF04899.12 gi|336477912|ref|YP_004617053.1| - 0.099 12.8 14.5 1.1 9.4 0.0 5.1 3 1 1 4 4 4 0 MbeD/MobD like MscS_porin PF12795.7 gi|336477912|ref|YP_004617053.1| - 0.15 11.6 61.3 1.3 8.5 9.6 5.8 1 1 5 6 6 6 0 Mechanosensitive ion channel porin domain APG6_N PF17675.1 gi|336477912|ref|YP_004617053.1| - 0.16 12.5 85.9 0.02 15.4 9.5 6.8 1 1 4 5 5 3 0 Apg6 coiled-coil region DUF2963 PF11178.8 gi|336477912|ref|YP_004617053.1| - 0.16 11.7 4.2 1.1 9.0 2.3 3.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2963) RsgA_GTPase PF03193.16 gi|336477912|ref|YP_004617053.1| - 0.17 11.7 0.0 0.17 11.7 0.0 3.3 4 0 0 4 4 1 0 RsgA GTPase MukB PF04310.12 gi|336477912|ref|YP_004617053.1| - 0.18 11.6 0.0 0.18 11.6 0.0 4.3 4 1 1 5 5 4 0 MukB N-terminal DUF1664 PF07889.12 gi|336477912|ref|YP_004617053.1| - 0.2 11.7 58.6 0.11 12.6 6.8 7.6 2 2 7 9 9 9 0 Protein of unknown function (DUF1664) Mce4_CUP1 PF11887.8 gi|336477912|ref|YP_004617053.1| - 0.27 10.6 5.9 1.5 8.2 0.4 2.9 3 0 0 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative ABC_tran PF00005.27 gi|336477912|ref|YP_004617053.1| - 0.32 11.5 0.0 0.32 11.5 0.0 5.9 3 1 0 3 3 2 0 ABC transporter DHR10 PF18595.1 gi|336477912|ref|YP_004617053.1| - 0.53 10.4 85.7 0.14 12.3 10.1 8.0 3 2 5 8 8 8 0 Designed helical repeat protein 10 domain Tropomyosin_1 PF12718.7 gi|336477912|ref|YP_004617053.1| - 1.1 9.4 88.2 0.63 10.2 20.8 5.4 2 2 3 5 5 5 0 Tropomyosin like HrpB7 PF09486.10 gi|336477912|ref|YP_004617053.1| - 1.5 9.2 33.0 0.99 9.8 5.4 6.1 2 2 4 6 6 6 0 Bacterial type III secretion protein (HrpB7) WXG100 PF06013.12 gi|336477912|ref|YP_004617053.1| - 1.6 9.0 20.6 0.14 12.4 0.8 5.9 4 2 1 5 5 5 0 Proteins of 100 residues with WXG DUF3584 PF12128.8 gi|336477912|ref|YP_004617053.1| - 1.6 6.1 70.2 0.21 9.0 29.9 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF3584) DUF4407 PF14362.6 gi|336477912|ref|YP_004617053.1| - 2.3 7.5 55.3 4.4 6.6 8.0 4.5 1 1 2 3 3 2 0 Domain of unknown function (DUF4407) NPV_P10 PF05531.12 gi|336477912|ref|YP_004617053.1| - 2.9 8.4 38.7 4.3 7.9 3.0 8.7 4 3 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Filament PF00038.21 gi|336477912|ref|YP_004617053.1| - 3.2 7.3 84.9 0.45 10.0 9.0 4.7 1 1 2 4 4 4 0 Intermediate filament protein BLOC1_2 PF10046.9 gi|336477912|ref|YP_004617053.1| - 3.2 8.1 71.0 0.17 12.2 5.6 8.6 3 2 5 9 9 9 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.6 gi|336477912|ref|YP_004617053.1| - 7.8 5.8 92.1 0.28 10.5 13.0 5.8 2 2 3 6 6 6 0 Growth-arrest specific micro-tubule binding Metallophos PF00149.28 gi|336477913|ref|YP_004617054.1| - 1.3e-11 45.4 1.0 2.4e-11 44.5 1.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|336477913|ref|YP_004617054.1| - 7.6e-09 36.0 0.1 2.1e-08 34.5 0.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DZR PF12773.7 gi|336477914|ref|YP_004617055.1| - 0.011 15.7 0.6 0.016 15.2 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|336477914|ref|YP_004617055.1| - 0.028 14.1 4.5 0.06 13.1 4.5 1.6 1 1 0 1 1 1 0 zinc-ribbon domain PolC_DP2 PF03833.13 gi|336477914|ref|YP_004617055.1| - 0.048 11.5 0.4 0.047 11.6 0.4 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 YhfH PF14149.6 gi|336477914|ref|YP_004617055.1| - 0.052 13.5 0.4 0.052 13.5 0.4 2.3 1 1 1 2 2 2 0 YhfH-like protein zf-NADH-PPase PF09297.11 gi|336477914|ref|YP_004617055.1| - 0.14 11.9 1.3 1.8 8.3 0.1 2.2 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|336477914|ref|YP_004617055.1| - 0.18 11.8 0.4 0.18 11.8 0.4 2.2 2 1 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|336477914|ref|YP_004617055.1| - 0.18 11.2 3.7 0.63 9.5 3.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain C1_2 PF03107.16 gi|336477914|ref|YP_004617055.1| - 0.24 11.8 2.8 0.39 11.1 2.8 1.4 1 0 0 1 1 1 0 C1 domain zf_UBZ PF18439.1 gi|336477914|ref|YP_004617055.1| - 0.25 11.0 4.0 1.5 8.5 0.2 2.4 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF2256 PF10013.9 gi|336477914|ref|YP_004617055.1| - 0.45 10.7 4.0 0.3 11.2 0.6 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) NurA PF09376.10 gi|336477915|ref|YP_004617056.1| - 2.7e-06 27.2 0.0 3.3e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|336477916|ref|YP_004617057.1| - 5.1e-10 39.8 0.0 1e-09 38.8 0.0 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|336477916|ref|YP_004617057.1| - 9.1e-10 37.7 0.0 4.2e-06 25.7 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA PF00004.29 gi|336477916|ref|YP_004617057.1| - 9e-05 22.9 0.0 0.75 10.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|336477916|ref|YP_004617057.1| - 0.00023 21.5 0.0 0.0019 18.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.7 gi|336477916|ref|YP_004617057.1| - 0.00051 19.1 0.0 0.36 9.7 0.0 2.6 3 0 0 3 3 3 2 AAA-like domain RNA_helicase PF00910.22 gi|336477916|ref|YP_004617057.1| - 0.00057 20.2 0.0 0.0012 19.2 0.0 1.5 1 0 0 1 1 1 1 RNA helicase ResIII PF04851.15 gi|336477916|ref|YP_004617057.1| - 0.0013 18.7 0.0 0.045 13.7 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|336477916|ref|YP_004617057.1| - 0.0015 17.6 0.0 0.011 14.7 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_7 PF12775.7 gi|336477916|ref|YP_004617057.1| - 0.0024 17.4 0.0 0.0054 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|336477916|ref|YP_004617057.1| - 0.0027 17.1 0.0 0.17 11.2 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family DEAD PF00270.29 gi|336477916|ref|YP_004617057.1| - 0.0027 17.5 0.0 1.6 8.5 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|336477916|ref|YP_004617057.1| - 0.035 14.5 0.0 0.6 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain Septin PF00735.18 gi|336477916|ref|YP_004617057.1| - 0.05 12.9 0.0 7.5 5.7 0.0 2.3 2 0 0 2 2 2 0 Septin AAA_14 PF13173.6 gi|336477916|ref|YP_004617057.1| - 0.066 13.2 0.0 0.24 11.4 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.6 gi|336477916|ref|YP_004617057.1| - 0.079 13.1 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|336477916|ref|YP_004617057.1| - 0.083 13.4 0.0 0.21 12.1 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_19 PF13245.6 gi|336477916|ref|YP_004617057.1| - 0.15 12.4 0.0 0.39 11.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain NTP_transf_9 PF04248.12 gi|336477917|ref|YP_004617058.1| - 4.1e-18 65.0 0.6 4.8e-18 64.8 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF427) AP_endonuc_2 PF01261.24 gi|336477918|ref|YP_004617059.1| - 1.1e-26 93.6 0.1 1.3e-26 93.4 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel RNA_binding PF01877.17 gi|336477919|ref|YP_004617060.1| - 6.2e-17 62.0 0.0 1e-16 61.3 0.0 1.3 1 1 0 1 1 1 1 RNA binding DUF493 PF04359.14 gi|336477919|ref|YP_004617060.1| - 0.0043 17.6 0.0 3.5 8.3 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF493) ACT_4 PF13291.6 gi|336477919|ref|YP_004617060.1| - 0.13 12.9 0.0 1.7 9.3 0.0 2.2 2 0 0 2 2 2 0 ACT domain AAA_17 PF13207.6 gi|336477920|ref|YP_004617061.1| - 5.3e-18 65.8 0.1 8.4e-18 65.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|336477920|ref|YP_004617061.1| - 9.6e-13 48.8 0.0 1.3e-12 48.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|336477920|ref|YP_004617061.1| - 9.1e-05 22.6 0.0 0.00017 21.8 0.0 1.4 2 0 0 2 2 2 1 AAA domain ADK PF00406.22 gi|336477920|ref|YP_004617061.1| - 0.0088 16.2 0.0 0.018 15.2 0.0 1.6 2 0 0 2 2 2 1 Adenylate kinase CoaE PF01121.20 gi|336477920|ref|YP_004617061.1| - 0.024 14.3 0.2 0.25 11.0 0.0 2.1 1 1 0 2 2 2 0 Dephospho-CoA kinase GYD PF08734.11 gi|336477921|ref|YP_004617062.1| - 1.6e-25 88.9 0.0 1.7e-25 88.8 0.0 1.0 1 0 0 1 1 1 1 GYD domain AsnC_trans_reg PF01037.21 gi|336477921|ref|YP_004617062.1| - 0.0028 17.6 0.0 0.0036 17.2 0.0 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Exog_C PF18026.1 gi|336477921|ref|YP_004617062.1| - 0.016 15.2 0.2 0.028 14.5 0.2 1.5 1 1 0 1 1 1 0 Endo/exonuclease (EXOG) C-terminal domain Sucrose_synth PF00862.19 gi|336477921|ref|YP_004617062.1| - 0.029 12.7 0.1 0.032 12.6 0.1 1.0 1 0 0 1 1 1 0 Sucrose synthase Usp PF00582.26 gi|336477922|ref|YP_004617063.1| - 2e-36 125.6 0.3 3.1e-36 125.0 0.3 1.3 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|336477923|ref|YP_004617064.1| - 1.1e-30 106.9 1.9 1.3e-30 106.8 1.9 1.0 1 0 0 1 1 1 1 Universal stress protein family Endopep_inhib PF16800.5 gi|336477923|ref|YP_004617064.1| - 0.025 14.5 0.5 0.031 14.2 0.5 1.3 1 0 0 1 1 1 0 IseA DL-endopeptidase inhibitor QueF PF14489.6 gi|336477923|ref|YP_004617064.1| - 0.089 13.0 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 QueF-like protein POR PF01558.18 gi|336477924|ref|YP_004617065.1| - 3e-40 138.2 0.3 3.6e-40 137.9 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Imm52 PF15579.6 gi|336477924|ref|YP_004617065.1| - 0.045 13.6 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 52 Fer4 PF00037.27 gi|336477925|ref|YP_004617066.1| - 1.6e-14 53.0 12.9 4.3e-09 35.8 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336477925|ref|YP_004617066.1| - 1.7e-11 44.0 6.0 2.4e-11 43.6 6.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336477925|ref|YP_004617066.1| - 3.4e-09 36.7 17.0 7.4e-08 32.4 6.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336477925|ref|YP_004617066.1| - 5.4e-09 36.5 18.5 5.8e-07 30.0 9.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336477925|ref|YP_004617066.1| - 1.2e-08 34.6 13.1 5e-05 23.2 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|336477925|ref|YP_004617066.1| - 3.2e-07 30.1 8.6 0.0012 18.8 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336477925|ref|YP_004617066.1| - 7.9e-07 29.1 20.8 0.00016 21.7 11.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336477925|ref|YP_004617066.1| - 5.1e-06 26.6 10.5 0.0059 17.0 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336477925|ref|YP_004617066.1| - 2.5e-05 25.1 10.5 0.0011 19.8 1.5 2.2 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|336477925|ref|YP_004617066.1| - 3.8e-05 24.2 7.9 0.05 14.1 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336477925|ref|YP_004617066.1| - 0.00014 22.3 11.3 0.062 13.8 3.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336477925|ref|YP_004617066.1| - 0.00097 19.6 9.4 0.023 15.2 0.4 2.6 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|336477925|ref|YP_004617066.1| - 0.0014 19.3 10.8 0.37 11.5 3.4 2.9 2 1 1 3 3 3 3 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|336477925|ref|YP_004617066.1| - 0.03 15.2 10.7 0.15 13.0 1.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336477925|ref|YP_004617066.1| - 0.14 13.2 5.5 0.14 13.2 5.5 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336477925|ref|YP_004617066.1| - 0.66 10.2 7.4 1.3 9.3 7.4 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|336477926|ref|YP_004617067.1| - 5.1e-70 235.8 0.6 7e-70 235.4 0.6 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|336477926|ref|YP_004617067.1| - 2.3e-32 111.3 0.1 5.4e-32 110.1 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|336477926|ref|YP_004617067.1| - 2.5e-08 33.8 0.0 6.3e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|336477927|ref|YP_004617068.1| - 2e-28 99.1 0.1 2.6e-28 98.7 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HhH-GPD PF00730.25 gi|336477928|ref|YP_004617069.1| - 9.2e-26 90.4 0.0 1.4e-25 89.9 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|336477928|ref|YP_004617069.1| - 3.1e-07 29.9 0.0 8.5e-07 28.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|336477928|ref|YP_004617069.1| - 0.00013 22.5 0.1 0.15 12.7 0.2 2.5 1 1 1 2 2 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|336477928|ref|YP_004617069.1| - 0.0021 18.3 1.5 0.0043 17.4 1.5 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_8 PF14716.6 gi|336477928|ref|YP_004617069.1| - 0.017 15.5 0.0 0.041 14.2 0.0 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|336477928|ref|YP_004617069.1| - 0.11 12.6 0.2 6.2 7.0 0.1 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF5483 PF17581.2 gi|336477928|ref|YP_004617069.1| - 0.13 11.1 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5483) 5_3_exonuc PF01367.20 gi|336477928|ref|YP_004617069.1| - 0.15 12.6 0.1 1.2 9.8 0.0 2.1 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Hexapep PF00132.24 gi|336477929|ref|YP_004617070.1| - 6.5e-08 32.0 13.8 0.001 18.7 1.8 3.4 3 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|336477929|ref|YP_004617070.1| - 0.00058 19.6 12.5 0.017 14.8 2.3 3.2 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|336477929|ref|YP_004617070.1| - 0.0039 17.6 0.0 0.0078 16.6 0.0 1.6 1 1 0 1 1 1 1 Serine acetyltransferase, N-terminal DASH_Ask1 PF08655.10 gi|336477929|ref|YP_004617070.1| - 0.072 13.0 0.1 0.23 11.4 0.0 1.9 2 0 0 2 2 2 0 DASH complex subunit Ask1 Cas_St_Csn2 PF16813.5 gi|336477929|ref|YP_004617070.1| - 0.13 11.4 0.3 0.18 10.9 0.3 1.2 1 0 0 1 1 1 0 CRISPR-associated protein Csn2 subfamily St PALP PF00291.25 gi|336477930|ref|YP_004617071.1| - 3e-70 237.0 0.0 3.4e-70 236.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IMS PF00817.20 gi|336477931|ref|YP_004617072.1| - 6.2e-41 139.9 0.1 9.9e-41 139.2 0.1 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_HHH PF11798.8 gi|336477931|ref|YP_004617072.1| - 1.8e-08 34.2 0.6 6.1e-08 32.6 0.0 2.3 3 0 0 3 3 3 1 IMS family HHH motif IMS_C PF11799.8 gi|336477931|ref|YP_004617072.1| - 4.3e-06 27.4 0.2 8.1e-06 26.5 0.2 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain Cdd1 PF11731.8 gi|336477931|ref|YP_004617072.1| - 0.057 13.7 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus E1-E2_ATPase PF00122.20 gi|336477932|ref|YP_004617073.1| - 3.6e-52 176.5 0.3 3.6e-52 176.5 0.3 2.3 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|336477932|ref|YP_004617073.1| - 1.3e-40 139.9 0.4 2.5e-40 139.0 0.2 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|336477932|ref|YP_004617073.1| - 6.5e-05 22.8 5.0 0.0012 18.6 0.3 2.9 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336477932|ref|YP_004617073.1| - 0.00027 21.4 0.0 0.00057 20.3 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|336477932|ref|YP_004617073.1| - 0.0081 16.3 0.3 0.019 15.1 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase LRRC37AB_C PF14914.6 gi|336477932|ref|YP_004617073.1| - 0.12 12.3 2.7 0.1 12.5 0.3 2.1 2 0 0 2 2 2 0 LRRC37A/B like protein 1 C-terminal domain FTR_C PF02741.15 gi|336477933|ref|YP_004617074.1| - 4e-66 221.6 1.2 4e-66 221.6 1.2 1.5 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.18 gi|336477933|ref|YP_004617074.1| - 2.1e-63 212.5 0.1 4.8e-63 211.3 0.0 1.6 2 1 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase BMC PF00936.19 gi|336477933|ref|YP_004617074.1| - 0.054 13.5 1.8 0.077 13.0 0.3 2.0 2 0 0 2 2 2 0 BMC domain CBS PF00571.28 gi|336477934|ref|YP_004617075.1| - 6.8e-26 90.5 7.2 3.5e-14 53.0 2.3 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|336477934|ref|YP_004617075.1| - 2.6e-13 49.8 14.0 4e-08 32.8 0.9 3.5 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|336477934|ref|YP_004617075.1| - 0.0032 17.1 6.7 0.0047 16.6 5.8 1.7 1 1 0 1 1 1 1 Peptidase M50B-like CrgA PF06781.12 gi|336477934|ref|YP_004617075.1| - 0.35 11.0 3.7 0.26 11.4 0.7 2.1 2 0 0 2 2 2 0 Cell division protein CrgA Pyridoxal_deC PF00282.19 gi|336477935|ref|YP_004617076.1| - 4.9e-28 97.9 0.0 1.3e-27 96.5 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|336477935|ref|YP_004617076.1| - 3e-08 33.0 0.0 4.2e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|336477935|ref|YP_004617076.1| - 4.5e-06 26.1 0.0 9e-05 21.8 0.0 2.2 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|336477935|ref|YP_004617076.1| - 0.018 14.3 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosalsum_zhilinae_DSM_4017_uid68249/NC_015676.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosalsum_zhilinae_DSM_4017_uid68249/NC_015676.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosalsum_zhilinae_DSM_4017_uid68249/NC_015676.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosalsum_zhilinae_DSM_4017_uid68249/NC_015676.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:05:56 2019 # [ok]