# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- NadA PF02445.11 gi|116753326|ref|YP_842444.1| - 1.4e-124 414.7 0.5 1.5e-124 414.5 0.4 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein RTC PF01137.16 gi|116753328|ref|YP_842446.1| - 3.2e-83 277.9 0.0 3.7e-83 277.7 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|116753328|ref|YP_842446.1| - 9.4e-24 83.4 0.1 1.7e-23 82.5 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain RNA_pol_L_2 PF13656.1 gi|116753329|ref|YP_842447.1| - 1.4e-21 75.6 0.0 1.7e-21 75.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|116753329|ref|YP_842447.1| - 5.9e-09 34.9 0.0 7.2e-09 34.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain ECR1_N PF14382.1 gi|116753330|ref|YP_842448.1| - 1.4e-16 59.5 0.2 2.6e-16 58.6 0.2 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region Auto_anti-p27 PF06677.7 gi|116753330|ref|YP_842448.1| - 0.0012 18.5 2.0 0.0019 17.9 1.4 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|116753330|ref|YP_842448.1| - 0.0065 16.2 0.6 0.0098 15.6 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|116753330|ref|YP_842448.1| - 0.013 15.2 2.2 0.027 14.1 1.5 1.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|116753330|ref|YP_842448.1| - 0.039 13.6 1.1 0.067 12.9 0.8 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 S1 PF00575.18 gi|116753330|ref|YP_842448.1| - 0.049 13.7 1.0 12 6.0 0.0 2.6 2 0 0 2 2 2 0 S1 RNA binding domain EXOSC1 PF10447.4 gi|116753330|ref|YP_842448.1| - 0.089 12.7 0.5 0.27 11.1 0.4 1.8 1 1 0 1 1 1 0 Exosome component EXOSC1/CSL4 zf-C4_Topoisom PF01396.14 gi|116753330|ref|YP_842448.1| - 0.2 11.2 2.3 7 6.2 0.2 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C3HC4 PF00097.20 gi|116753330|ref|YP_842448.1| - 0.31 10.7 2.8 0.49 10.1 1.9 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|116753330|ref|YP_842448.1| - 0.4 10.6 3.9 0.92 9.5 2.7 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Methyltransf_26 PF13659.1 gi|116753331|ref|YP_842449.1| - 1.1e-16 60.8 0.0 1.4e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|116753331|ref|YP_842449.1| - 6.7e-15 54.8 0.0 9.2e-15 54.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|116753331|ref|YP_842449.1| - 4.9e-14 52.1 0.1 7e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|116753331|ref|YP_842449.1| - 2.7e-12 46.5 0.0 3.5e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|116753331|ref|YP_842449.1| - 3.2e-12 46.3 0.0 3.8e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|116753331|ref|YP_842449.1| - 1e-09 38.9 0.1 1.6e-09 38.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116753331|ref|YP_842449.1| - 5.1e-07 30.0 0.0 8e-07 29.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|116753331|ref|YP_842449.1| - 1.1e-06 28.3 0.0 1.7e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.7 gi|116753331|ref|YP_842449.1| - 3.5e-06 27.4 0.0 6.4e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|116753331|ref|YP_842449.1| - 0.00029 20.2 0.0 0.00042 19.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|116753331|ref|YP_842449.1| - 0.00031 20.5 0.0 0.0004 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|116753331|ref|YP_842449.1| - 0.00034 19.6 0.0 0.0005 19.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) MetW PF07021.7 gi|116753331|ref|YP_842449.1| - 0.00071 18.9 0.0 0.00085 18.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|116753331|ref|YP_842449.1| - 0.0018 17.9 0.0 0.0023 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|116753331|ref|YP_842449.1| - 0.011 16.2 0.0 0.018 15.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|116753331|ref|YP_842449.1| - 0.049 12.7 0.0 0.068 12.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|116753331|ref|YP_842449.1| - 0.068 12.5 0.2 0.15 11.4 0.0 1.6 2 0 0 2 2 2 0 Nodulation protein S (NodS) AdoMet_MTase PF07757.8 gi|116753331|ref|YP_842449.1| - 0.085 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase ABC_tran PF00005.22 gi|116753332|ref|YP_842450.1| - 2.8e-39 134.5 0.0 8e-20 71.5 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|116753332|ref|YP_842450.1| - 5.8e-13 49.4 8.4 1.1e-05 25.5 0.7 4.2 2 2 1 3 3 3 2 AAA domain SMC_N PF02463.14 gi|116753332|ref|YP_842450.1| - 1.4e-12 47.2 8.7 2.1e-06 27.1 0.9 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|116753332|ref|YP_842450.1| - 1.8e-12 46.6 2.8 4.1e-12 45.4 1.9 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|116753332|ref|YP_842450.1| - 5.8e-08 32.0 4.2 5.8e-08 32.0 2.9 2.4 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116753332|ref|YP_842450.1| - 5.9e-07 29.0 13.1 4.3e-06 26.3 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_29 PF13555.1 gi|116753332|ref|YP_842450.1| - 7.8e-07 28.5 0.5 0.0027 17.1 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|116753332|ref|YP_842450.1| - 0.00016 22.0 0.3 0.34 11.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|116753332|ref|YP_842450.1| - 0.00019 20.6 0.2 0.45 9.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 Fer4_7 PF12838.2 gi|116753332|ref|YP_842450.1| - 0.00026 21.2 1.2 0.00026 21.2 0.9 2.3 1 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116753332|ref|YP_842450.1| - 0.0007 19.3 3.4 0.0007 19.3 2.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_25 PF13481.1 gi|116753332|ref|YP_842450.1| - 0.00089 18.7 3.1 0.96 8.8 0.0 3.3 3 0 0 3 3 3 2 AAA domain Fer4_10 PF13237.1 gi|116753332|ref|YP_842450.1| - 0.00096 18.9 1.4 0.00096 18.9 0.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|116753332|ref|YP_842450.1| - 0.001 18.8 7.0 0.0018 18.1 4.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain SbcCD_C PF13558.1 gi|116753332|ref|YP_842450.1| - 0.0016 18.3 0.2 3.3 7.7 0.1 3.0 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|116753332|ref|YP_842450.1| - 0.0045 16.1 0.1 4.6 6.1 0.0 3.5 4 0 0 4 4 4 0 AAA ATPase domain Fer4_9 PF13187.1 gi|116753332|ref|YP_842450.1| - 0.0057 16.8 9.8 0.012 15.9 6.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain ArgK PF03308.11 gi|116753332|ref|YP_842450.1| - 0.006 15.3 0.6 0.62 8.7 0.1 2.2 2 0 0 2 2 2 1 ArgK protein Fer4_16 PF13484.1 gi|116753332|ref|YP_842450.1| - 0.015 16.0 0.3 0.015 16.0 0.2 2.1 2 0 0 2 2 1 0 4Fe-4S double cluster binding domain Rad17 PF03215.10 gi|116753332|ref|YP_842450.1| - 0.018 13.7 0.3 4.1 5.9 0.0 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein RNA_helicase PF00910.17 gi|116753332|ref|YP_842450.1| - 0.029 14.5 0.1 9.5 6.4 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_16 PF13191.1 gi|116753332|ref|YP_842450.1| - 0.043 13.8 5.4 2.9 7.8 0.2 3.1 2 2 0 2 2 2 0 AAA ATPase domain Fer4_17 PF13534.1 gi|116753332|ref|YP_842450.1| - 0.064 13.6 0.2 0.064 13.6 0.1 2.2 2 0 0 2 2 1 0 4Fe-4S dicluster domain AAA_14 PF13173.1 gi|116753332|ref|YP_842450.1| - 0.086 12.7 0.2 18 5.2 0.0 2.9 3 0 0 3 3 3 0 AAA domain WHIM1 PF15612.1 gi|116753332|ref|YP_842450.1| - 0.11 12.5 0.1 22 5.2 0.0 2.8 2 0 0 2 2 2 0 WSTF, HB1, Itc1p, MBD9 motif 1 AAA_18 PF13238.1 gi|116753332|ref|YP_842450.1| - 0.13 12.6 0.8 15 5.8 0.0 2.9 2 2 0 2 2 2 0 AAA domain VirE PF05272.6 gi|116753332|ref|YP_842450.1| - 0.18 11.2 0.0 12 5.2 0.0 2.4 2 0 0 2 2 2 0 Virulence-associated protein E NACHT PF05729.7 gi|116753332|ref|YP_842450.1| - 0.26 10.9 0.6 21 4.7 0.0 2.4 2 0 0 2 2 2 0 NACHT domain Fer4_4 PF12800.2 gi|116753332|ref|YP_842450.1| - 0.27 11.6 12.7 0.042 14.1 1.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|116753332|ref|YP_842450.1| - 0.36 10.8 6.8 1.2 9.2 4.8 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_13 PF13166.1 gi|116753332|ref|YP_842450.1| - 0.41 9.0 0.1 13 4.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain Fer4_18 PF13746.1 gi|116753332|ref|YP_842450.1| - 0.67 10.4 8.7 0.16 12.3 2.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_22 PF13401.1 gi|116753332|ref|YP_842450.1| - 0.72 9.9 2.2 30 4.7 0.0 2.9 2 2 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|116753332|ref|YP_842450.1| - 0.76 9.3 2.1 16 4.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|116753332|ref|YP_842450.1| - 0.88 9.2 2.9 36 4.0 0.1 3.4 3 1 0 3 3 3 0 NTPase AAA_10 PF12846.2 gi|116753332|ref|YP_842450.1| - 1 8.7 2.9 24 4.2 0.1 2.6 2 1 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|116753332|ref|YP_842450.1| - 2.3 9.0 8.7 4.4 8.1 0.5 3.4 2 2 0 2 2 2 0 AAA domain Fer4_3 PF12798.2 gi|116753332|ref|YP_842450.1| - 4.9 7.9 16.4 0.052 14.1 4.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Umbravirus_LDM PF04817.7 gi|116753333|ref|YP_842451.1| - 0.03 13.4 0.0 0.034 13.3 0.0 1.0 1 0 0 1 1 1 0 Umbravirus long distance movement (LDM) family ThiS PF02597.15 gi|116753334|ref|YP_842452.1| - 1.6e-14 54.0 0.0 1.8e-14 53.9 0.0 1.0 1 0 0 1 1 1 1 ThiS family MoaE PF02391.12 gi|116753335|ref|YP_842453.1| - 3.2e-27 94.6 0.2 3.6e-27 94.5 0.1 1.0 1 0 0 1 1 1 1 MoaE protein DUF2218 PF09981.4 gi|116753335|ref|YP_842453.1| - 0.1 12.8 0.0 0.72 10.0 0.0 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2218) CutA1 PF03091.10 gi|116753336|ref|YP_842454.1| - 3.2e-31 106.9 0.0 3.7e-31 106.7 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Arg_repressor_C PF02863.13 gi|116753336|ref|YP_842454.1| - 0.0055 16.1 0.0 3.2 7.3 0.0 2.2 2 0 0 2 2 2 2 Arginine repressor, C-terminal domain CxxCxxCC PF03692.10 gi|116753337|ref|YP_842455.1| - 3.1e-11 43.6 2.9 4.1e-11 43.1 2.0 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain AMP-binding PF00501.23 gi|116753338|ref|YP_842456.1| - 7.1e-20 70.7 0.3 1.8e-19 69.4 0.2 1.4 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C_2 PF14535.1 gi|116753338|ref|YP_842456.1| - 7.8e-20 70.7 0.0 2.4e-19 69.1 0.0 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain LuxE PF04443.7 gi|116753338|ref|YP_842456.1| - 1.3e-08 33.9 0.6 0.00046 18.9 0.0 2.4 3 0 0 3 3 3 2 Acyl-protein synthetase, LuxE AIRC PF00731.15 gi|116753339|ref|YP_842457.1| - 7.2e-45 151.9 0.9 7.9e-45 151.8 0.6 1.0 1 0 0 1 1 1 1 AIR carboxylase TIR_2 PF13676.1 gi|116753339|ref|YP_842457.1| - 0.089 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 TIR domain Usp PF00582.21 gi|116753340|ref|YP_842458.1| - 1.3e-34 119.3 3.4 1.5e-34 119.1 2.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Cytidylate_kin2 PF13189.1 gi|116753340|ref|YP_842458.1| - 0.013 15.3 0.3 0.017 14.9 0.2 1.1 1 0 0 1 1 1 0 Cytidylate kinase-like family AP_endonuc_2 PF01261.19 gi|116753340|ref|YP_842458.1| - 0.022 14.0 0.3 0.033 13.4 0.2 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DNA_photolyase PF00875.13 gi|116753340|ref|YP_842458.1| - 0.031 14.0 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase HGTP_anticodon PF03129.15 gi|116753340|ref|YP_842458.1| - 0.082 12.8 0.2 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 Anticodon binding domain Pil1 PF13805.1 gi|116753340|ref|YP_842458.1| - 0.092 11.8 0.2 0.11 11.6 0.1 1.1 1 0 0 1 1 1 0 Eisosome component PIL1 Radical_SAM PF04055.16 gi|116753341|ref|YP_842459.1| - 3.5e-08 33.8 0.2 1.7e-07 31.5 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|116753341|ref|YP_842459.1| - 2.4e-05 24.4 0.0 4.4e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|116753341|ref|YP_842459.1| - 0.00019 21.4 0.0 0.00036 20.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2551 PF10826.3 gi|116753342|ref|YP_842460.1| - 2.6e-33 113.7 0.3 3e-33 113.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.14 gi|116753342|ref|YP_842460.1| - 0.0013 18.6 0.0 0.0018 18.1 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Arg_repressor PF01316.16 gi|116753342|ref|YP_842460.1| - 0.016 14.7 0.0 0.11 12.0 0.0 2.0 1 1 1 2 2 2 0 Arginine repressor, DNA binding domain CbiX PF01903.12 gi|116753342|ref|YP_842460.1| - 0.044 13.8 0.0 0.047 13.8 0.0 1.2 1 0 0 1 1 1 0 CbiX Radical_SAM PF04055.16 gi|116753343|ref|YP_842461.1| - 5.3e-11 42.9 0.0 1.5e-10 41.5 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|116753343|ref|YP_842461.1| - 3.8e-05 23.5 0.2 0.0011 18.8 0.0 3.0 3 1 0 3 3 3 1 B12 binding domain Cobalamin_bind PF01122.14 gi|116753343|ref|YP_842461.1| - 0.23 10.0 0.0 0.33 9.5 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic cobalamin-binding protein DUF39 PF01837.11 gi|116753344|ref|YP_842462.1| - 1.8e-147 490.4 0.0 2.2e-147 490.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|116753344|ref|YP_842462.1| - 2.9e-31 106.9 3.2 3.8e-15 55.4 0.2 2.6 2 0 0 2 2 2 2 CBS domain DUF2379 PF09543.5 gi|116753344|ref|YP_842462.1| - 0.13 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2379) DUF3659 PF12396.3 gi|116753344|ref|YP_842462.1| - 0.14 11.8 1.0 3.2 7.5 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) Fer4 PF00037.22 gi|116753345|ref|YP_842463.1| - 2.2e-15 55.4 17.1 3.8e-09 35.7 1.8 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116753345|ref|YP_842463.1| - 1.2e-12 47.0 17.8 9.7e-09 34.7 2.1 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|116753345|ref|YP_842463.1| - 9.2e-12 45.0 23.6 1.6e-08 34.6 8.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116753345|ref|YP_842463.1| - 2.6e-11 43.7 14.3 4e-11 43.1 9.3 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116753345|ref|YP_842463.1| - 3.2e-11 42.4 18.8 9.9e-08 31.4 2.9 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|116753345|ref|YP_842463.1| - 3.8e-10 39.4 11.0 3.8e-10 39.4 7.6 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|116753345|ref|YP_842463.1| - 3.2e-07 30.1 17.5 0.00032 20.7 1.5 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116753345|ref|YP_842463.1| - 4.6e-07 29.6 12.7 0.00029 20.6 0.5 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116753345|ref|YP_842463.1| - 5.3e-07 30.2 11.8 0.0018 18.9 2.1 2.4 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|116753345|ref|YP_842463.1| - 1.2e-06 28.5 22.0 0.0043 17.5 5.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|116753345|ref|YP_842463.1| - 2.1e-05 24.8 16.2 0.015 15.6 2.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116753345|ref|YP_842463.1| - 2.5e-05 24.1 15.5 0.00055 19.9 10.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116753345|ref|YP_842463.1| - 7.4e-05 23.0 13.7 0.0082 16.4 2.0 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain NIL PF09383.5 gi|116753345|ref|YP_842463.1| - 7.8e-05 22.1 0.0 0.0001 21.7 0.0 1.1 1 0 0 1 1 1 1 NIL domain Fer4_15 PF13459.1 gi|116753345|ref|YP_842463.1| - 0.00024 21.5 16.5 0.025 15.1 2.1 2.9 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|116753345|ref|YP_842463.1| - 0.0015 18.9 18.0 0.095 13.1 2.6 2.7 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|116753345|ref|YP_842463.1| - 0.0084 15.9 5.7 0.0084 15.9 4.0 1.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|116753345|ref|YP_842463.1| - 0.16 11.7 8.5 0.53 10.1 5.9 2.2 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster GCC2_GCC3 PF07699.8 gi|116753345|ref|YP_842463.1| - 0.43 10.2 6.7 5.4 6.6 4.7 2.3 1 1 0 1 1 1 0 GCC2 and GCC3 c-SKI_SMAD_bind PF08782.5 gi|116753345|ref|YP_842463.1| - 4 7.6 8.1 4.4 7.5 0.3 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Met_10 PF02475.11 gi|116753346|ref|YP_842464.1| - 7.6e-58 195.4 0.0 1.1e-57 194.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|116753346|ref|YP_842464.1| - 2.8e-11 43.4 0.1 5.8e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116753346|ref|YP_842464.1| - 3.4e-10 40.5 0.0 6.6e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116753346|ref|YP_842464.1| - 2.3e-09 37.0 0.0 4.3e-09 36.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|116753346|ref|YP_842464.1| - 2.5e-08 33.4 0.1 5.4e-08 32.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|116753346|ref|YP_842464.1| - 2.3e-06 27.1 0.0 5.6e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|116753346|ref|YP_842464.1| - 1e-05 25.1 0.0 1.6e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.8 gi|116753346|ref|YP_842464.1| - 6.1e-05 22.2 0.0 9.1e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|116753346|ref|YP_842464.1| - 0.00025 21.4 0.0 0.0005 20.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|116753346|ref|YP_842464.1| - 0.00032 19.7 0.0 0.00047 19.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase SAM_MT PF04445.8 gi|116753346|ref|YP_842464.1| - 0.0013 17.9 0.4 0.002 17.3 0.0 1.5 2 0 0 2 2 2 1 Putative SAM-dependent methyltransferase Methyltransf_23 PF13489.1 gi|116753346|ref|YP_842464.1| - 0.0015 18.3 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.21 gi|116753346|ref|YP_842464.1| - 0.0019 17.7 0.1 0.13 11.7 0.0 2.5 1 1 1 2 2 2 1 Zinc-binding dehydrogenase TRM PF02005.11 gi|116753346|ref|YP_842464.1| - 0.0022 17.0 0.0 0.0031 16.5 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_25 PF13649.1 gi|116753346|ref|YP_842464.1| - 0.006 16.9 0.0 0.019 15.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.9 gi|116753346|ref|YP_842464.1| - 0.0065 15.6 0.0 0.013 14.7 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB Hydantoinase_A PF01968.13 gi|116753346|ref|YP_842464.1| - 0.0076 15.3 0.1 0.012 14.7 0.1 1.2 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase DNA_methylase PF00145.12 gi|116753346|ref|YP_842464.1| - 0.013 14.6 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase N6_N4_Mtase PF01555.13 gi|116753346|ref|YP_842464.1| - 0.043 13.2 0.0 0.073 12.5 0.0 1.3 1 0 0 1 1 1 0 DNA methylase Methyltrans_SAM PF10672.4 gi|116753346|ref|YP_842464.1| - 0.079 11.7 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase GatB_N PF02934.10 gi|116753347|ref|YP_842465.1| - 2e-78 263.2 0.0 2.8e-78 262.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|116753347|ref|YP_842465.1| - 8.4e-21 74.2 0.0 2.2e-20 72.9 0.0 1.7 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|116753347|ref|YP_842465.1| - 1.7e-14 53.7 0.0 3.3e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|116753347|ref|YP_842465.1| - 4.5e-06 26.5 0.3 1e-05 25.4 0.2 1.6 1 0 0 1 1 1 1 Yqey-like protein CBFD_NFYB_HMF PF00808.18 gi|116753348|ref|YP_842466.1| - 4.5e-16 58.6 0.7 5e-16 58.5 0.5 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|116753348|ref|YP_842466.1| - 1.7e-12 47.3 0.3 1.9e-12 47.0 0.2 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.12 gi|116753348|ref|YP_842466.1| - 4.3e-06 26.5 0.4 4.5e-06 26.5 0.3 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.1 gi|116753348|ref|YP_842466.1| - 0.0002 21.4 0.0 0.00021 21.4 0.0 1.2 1 0 0 1 1 1 1 Kinetochore component CENP-S Bromo_TP PF07524.8 gi|116753348|ref|YP_842466.1| - 0.00041 20.0 0.0 0.00047 19.8 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated TFIID-31kDa PF02291.10 gi|116753348|ref|YP_842466.1| - 0.016 15.0 0.0 0.018 14.8 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit AAA_32 PF13654.1 gi|116753348|ref|YP_842466.1| - 0.07 11.7 0.4 0.075 11.6 0.3 1.0 1 0 0 1 1 1 0 AAA domain PP_kinase_C PF13090.1 gi|116753348|ref|YP_842466.1| - 0.072 11.6 0.0 0.075 11.6 0.0 1.0 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain CENP-T PF15511.1 gi|116753348|ref|YP_842466.1| - 0.096 11.9 0.0 0.096 11.9 0.0 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T TFIID-18kDa PF02269.11 gi|116753348|ref|YP_842466.1| - 0.13 12.0 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit Aconitase_C PF00694.14 gi|116753349|ref|YP_842467.1| - 2.6e-21 76.0 0.1 8.2e-21 74.4 0.1 1.8 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|116753349|ref|YP_842467.1| - 0.0014 18.0 0.1 0.0098 15.3 0.0 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus FAA_hydrolase PF01557.13 gi|116753349|ref|YP_842467.1| - 0.041 13.3 0.0 0.058 12.8 0.0 1.1 1 0 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family Iso_dh PF00180.15 gi|116753350|ref|YP_842468.1| - 2.1e-99 332.8 0.0 2.4e-99 332.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase RNA_pol_Rpb5_C PF01191.14 gi|116753351|ref|YP_842469.1| - 7.8e-31 105.4 0.4 8.5e-31 105.3 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF4283 PF14111.1 gi|116753351|ref|YP_842469.1| - 0.012 14.6 0.0 0.013 14.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) IF2_N PF04760.10 gi|116753351|ref|YP_842469.1| - 0.12 12.0 0.4 13 5.4 0.1 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region RNA_pol_Rpb2_1 PF04563.10 gi|116753352|ref|YP_842470.1| - 5.3e-58 195.2 0.2 6.3e-58 195.0 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|116753352|ref|YP_842470.1| - 1.6e-29 102.6 0.2 2.4e-29 102.1 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|116753352|ref|YP_842470.1| - 6.5e-24 83.4 0.0 1.2e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.23 gi|116753353|ref|YP_842471.1| - 5e-123 410.6 0.0 6.2e-123 410.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|116753353|ref|YP_842471.1| - 1.5e-27 95.6 0.0 2.9e-27 94.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|116753353|ref|YP_842471.1| - 8.8e-25 86.3 1.8 1.9e-24 85.2 1.2 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|116753353|ref|YP_842471.1| - 2.4e-14 53.0 2.5 4.5e-14 52.1 1.7 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 TF_Zn_Ribbon PF08271.7 gi|116753353|ref|YP_842471.1| - 0.033 13.5 1.1 4 6.8 0.1 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding RNA_pol_Rpb2_45 PF10385.4 gi|116753353|ref|YP_842471.1| - 0.039 13.7 0.3 0.091 12.5 0.2 1.6 1 0 0 1 1 1 0 RNA polymerase beta subunit external 1 domain Auto_anti-p27 PF06677.7 gi|116753353|ref|YP_842471.1| - 0.065 13.0 0.5 0.13 12.0 0.4 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cys_rich_CPCC PF14206.1 gi|116753353|ref|YP_842471.1| - 0.18 11.4 0.9 0.51 9.9 0.3 1.9 2 0 0 2 2 2 0 Cysteine-rich CPCC RNA_pol_Rpb1_1 PF04997.7 gi|116753354|ref|YP_842472.1| - 1.9e-88 296.9 0.0 1.9e-52 178.5 0.0 2.2 1 1 1 2 2 2 2 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|116753354|ref|YP_842472.1| - 2.7e-69 232.3 0.1 4.2e-69 231.7 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|116753354|ref|YP_842472.1| - 2.2e-33 115.2 0.0 3.8e-33 114.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|116753354|ref|YP_842472.1| - 2e-32 111.1 0.0 3.9e-32 110.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|116753354|ref|YP_842472.1| - 4.3e-31 108.1 0.0 6.7e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-ribbon_3 PF13248.1 gi|116753354|ref|YP_842472.1| - 0.076 12.2 4.1 0.42 9.8 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|116753354|ref|YP_842472.1| - 1.6 8.3 7.8 0.55 9.7 0.2 2.8 2 0 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.12 gi|116753355|ref|YP_842473.1| - 1.2e-51 175.6 1.1 1.6e-51 175.2 0.7 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HTH_26 PF13443.1 gi|116753355|ref|YP_842473.1| - 0.018 15.2 0.0 9.2 6.5 0.0 2.7 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain NAC PF01849.13 gi|116753355|ref|YP_842473.1| - 0.027 13.9 0.2 0.071 12.6 0.1 1.7 1 0 0 1 1 1 0 NAC domain DUF1828 PF08861.5 gi|116753355|ref|YP_842473.1| - 0.06 12.9 0.3 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF1828 Ribosomal_L7Ae PF01248.21 gi|116753356|ref|YP_842474.1| - 1.6e-14 53.1 0.0 1.8e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|116753357|ref|YP_842475.1| - 2e-21 75.3 5.3 6.7e-16 57.6 0.8 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|116753357|ref|YP_842475.1| - 4.6e-16 58.3 0.8 4.6e-16 58.3 0.6 2.0 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|116753357|ref|YP_842475.1| - 1.7e-10 40.4 1.1 1.1e-05 24.9 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|116753357|ref|YP_842475.1| - 7.9e-06 25.4 3.0 0.0012 18.4 0.7 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|116753357|ref|YP_842475.1| - 6.1 6.6 10.0 0.31 10.7 0.3 3.0 3 0 0 3 3 3 0 KH domain Ribosom_S12_S23 PF00164.20 gi|116753358|ref|YP_842476.1| - 6e-38 129.0 0.1 6.6e-38 128.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|116753359|ref|YP_842477.1| - 1.8e-41 141.1 2.9 2.1e-41 140.9 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e FdhD-NarQ PF02634.10 gi|116753360|ref|YP_842478.1| - 1.3e-59 201.5 1.0 3.3e-58 196.9 0.7 2.0 1 1 0 1 1 1 1 FdhD/NarQ family ABC_tran PF00005.22 gi|116753361|ref|YP_842479.1| - 2.6e-34 118.4 0.0 4e-34 117.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116753361|ref|YP_842479.1| - 1.5e-16 61.2 0.1 1.1e-10 42.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|116753361|ref|YP_842479.1| - 4.6e-06 27.0 0.0 8.3e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|116753361|ref|YP_842479.1| - 1.8e-05 24.0 0.0 0.024 13.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|116753361|ref|YP_842479.1| - 3.2e-05 23.3 0.1 6e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|116753361|ref|YP_842479.1| - 0.0002 21.7 0.0 0.00027 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|116753361|ref|YP_842479.1| - 0.00029 20.1 0.0 0.55 9.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|116753361|ref|YP_842479.1| - 0.0028 17.8 0.2 0.044 13.9 0.1 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|116753361|ref|YP_842479.1| - 0.0075 16.2 0.0 0.017 15.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain ArgK PF03308.11 gi|116753361|ref|YP_842479.1| - 0.011 14.5 0.1 0.019 13.7 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_10 PF12846.2 gi|116753361|ref|YP_842479.1| - 0.021 14.2 0.1 0.4 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|116753361|ref|YP_842479.1| - 0.03 13.4 0.0 0.046 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|116753361|ref|YP_842479.1| - 0.077 13.1 0.1 0.3 11.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|116753361|ref|YP_842479.1| - 0.081 12.7 0.2 0.32 10.8 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_PrkA PF08298.6 gi|116753361|ref|YP_842479.1| - 0.15 10.6 0.0 0.23 10.0 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain MMR_HSR1 PF01926.18 gi|116753361|ref|YP_842479.1| - 0.15 11.9 0.1 0.41 10.6 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|116753361|ref|YP_842479.1| - 0.16 11.5 0.0 0.34 10.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.19 gi|116753362|ref|YP_842480.1| - 2.3e-36 124.9 19.5 3e-36 124.5 13.5 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|116753362|ref|YP_842480.1| - 1.6e-15 57.0 21.0 1.6e-15 57.0 14.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|116753362|ref|YP_842480.1| - 1.5e-06 27.5 17.2 2.2e-06 27.0 11.9 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein CbtB PF09489.5 gi|116753362|ref|YP_842480.1| - 4.4 7.2 7.3 8.1 6.4 0.1 3.0 3 0 0 3 3 3 0 Probable cobalt transporter subunit (CbtB) Crystall PF00030.14 gi|116753363|ref|YP_842481.1| - 8.2e-08 32.0 0.0 1.1e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Beta/Gamma crystallin DUF1699 PF08004.6 gi|116753364|ref|YP_842482.1| - 1.3e-62 209.1 1.1 1.4e-62 208.9 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) IMS PF00817.15 gi|116753364|ref|YP_842482.1| - 0.0026 17.5 1.3 0.093 12.5 0.9 2.1 1 1 0 1 1 1 1 impB/mucB/samB family Ribosomal_S6 PF01250.12 gi|116753364|ref|YP_842482.1| - 0.016 15.0 0.2 0.18 11.7 0.2 2.3 1 1 0 1 1 1 0 Ribosomal protein S6 Toxin-deaminase PF14424.1 gi|116753365|ref|YP_842483.1| - 0.049 13.6 0.0 0.075 13.0 0.0 1.3 1 0 0 1 1 1 0 The BURPS668_1122 family of deaminases Thioredoxin_8 PF13905.1 gi|116753365|ref|YP_842483.1| - 0.09 12.9 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like TIM PF00121.13 gi|116753366|ref|YP_842484.1| - 1.9e-29 102.4 0.2 2.5e-27 95.5 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|116753366|ref|YP_842484.1| - 0.0004 19.5 0.4 0.0004 19.5 0.3 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|116753366|ref|YP_842484.1| - 0.019 14.1 2.6 0.022 13.9 0.8 1.7 2 0 0 2 2 2 0 Nitronate monooxygenase IGPS PF00218.16 gi|116753366|ref|YP_842484.1| - 0.022 13.8 0.1 0.032 13.2 0.1 1.5 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|116753366|ref|YP_842484.1| - 0.033 13.0 1.3 0.063 12.1 0.9 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Hydrolase_like PF13242.1 gi|116753366|ref|YP_842484.1| - 0.063 12.9 0.2 2.2 8.0 0.1 2.4 2 0 0 2 2 2 0 HAD-hyrolase-like Acylphosphatase PF00708.13 gi|116753367|ref|YP_842485.1| - 2.4e-25 88.4 0.0 2.7e-25 88.3 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Fer4_7 PF12838.2 gi|116753368|ref|YP_842486.1| - 6.4e-12 45.6 23.8 1.8e-07 31.4 10.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|116753368|ref|YP_842486.1| - 3.5e-11 42.1 18.2 4e-07 29.3 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|116753368|ref|YP_842486.1| - 1.7e-09 38.2 9.4 2.1e-05 25.1 0.8 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|116753368|ref|YP_842486.1| - 3.4e-09 36.3 23.3 2.7e-05 23.8 9.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116753368|ref|YP_842486.1| - 4.5e-08 33.2 11.7 3e-05 24.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116753368|ref|YP_842486.1| - 1.9e-07 30.5 13.2 0.00015 21.4 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116753368|ref|YP_842486.1| - 2.4e-07 30.3 16.8 0.00013 21.6 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|116753368|ref|YP_842486.1| - 4.8e-06 26.4 26.1 0.00092 19.1 11.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|116753368|ref|YP_842486.1| - 2.4e-05 24.5 23.5 8.2e-05 22.8 3.4 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|116753368|ref|YP_842486.1| - 0.00012 22.0 14.7 0.0019 18.3 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|116753368|ref|YP_842486.1| - 0.00012 22.3 16.6 0.00016 22.0 0.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116753368|ref|YP_842486.1| - 0.00023 21.4 11.1 0.0076 16.5 1.1 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116753368|ref|YP_842486.1| - 0.00066 20.1 11.1 0.044 14.3 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|116753368|ref|YP_842486.1| - 0.00088 19.0 14.7 0.0069 16.2 10.2 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|116753368|ref|YP_842486.1| - 0.013 15.8 13.3 0.016 15.5 1.2 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|116753368|ref|YP_842486.1| - 1.2 9.1 7.2 1 9.2 0.2 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-Paramyx-P PF13008.2 gi|116753368|ref|YP_842486.1| - 6.6 6.0 10.9 2.3 7.4 1.8 2.2 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein FAD_binding_3 PF01494.14 gi|116753369|ref|YP_842487.1| - 2.3e-18 66.4 2.9 2.4e-06 26.8 0.2 3.0 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|116753369|ref|YP_842487.1| - 2.6e-13 49.6 2.8 5.5e-06 25.5 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|116753369|ref|YP_842487.1| - 5.6e-11 41.9 4.0 1.3e-08 34.1 0.2 2.4 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|116753369|ref|YP_842487.1| - 3.4e-10 39.5 6.0 1.4e-09 37.5 4.2 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|116753369|ref|YP_842487.1| - 1.1e-08 34.3 0.3 1.8e-05 23.8 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.9 gi|116753369|ref|YP_842487.1| - 6.2e-08 31.5 0.8 1.1e-07 30.6 0.5 1.4 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|116753369|ref|YP_842487.1| - 2.4e-07 30.8 7.1 1.1e-06 28.7 4.9 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|116753369|ref|YP_842487.1| - 6.1e-07 28.4 0.2 0.019 13.6 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|116753369|ref|YP_842487.1| - 2.6e-06 26.7 0.6 6.8e-06 25.3 0.1 1.9 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|116753369|ref|YP_842487.1| - 8e-06 25.7 0.1 2e-05 24.5 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|116753369|ref|YP_842487.1| - 2.5e-05 23.3 1.4 4.6e-05 22.4 0.2 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|116753369|ref|YP_842487.1| - 0.00035 20.9 0.4 0.0017 18.7 0.2 2.3 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|116753369|ref|YP_842487.1| - 0.00087 19.4 0.1 0.0011 19.0 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|116753369|ref|YP_842487.1| - 0.0022 17.6 0.5 0.0072 16.0 0.1 2.1 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|116753369|ref|YP_842487.1| - 0.019 15.2 0.0 0.057 13.7 0.0 1.9 2 0 0 2 2 2 0 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|116753369|ref|YP_842487.1| - 0.036 13.6 0.3 0.075 12.5 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain H-K_ATPase_N PF09040.6 gi|116753369|ref|YP_842487.1| - 0.04 14.0 0.8 0.1 12.7 0.5 1.6 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain SE PF08491.5 gi|116753369|ref|YP_842487.1| - 0.14 11.0 0.1 0.2 10.4 0.1 1.2 1 0 0 1 1 1 0 Squalene epoxidase Pro_isomerase PF00160.16 gi|116753370|ref|YP_842488.1| - 8.4e-51 172.2 0.0 9.4e-51 172.0 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NosD PF05048.8 gi|116753371|ref|YP_842489.1| - 4.4e-63 212.6 65.8 6.8e-27 94.1 11.3 4.2 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|116753371|ref|YP_842489.1| - 9.4e-43 145.6 81.8 1.1e-14 54.5 20.1 4.5 1 1 2 4 4 4 4 Right handed beta helix region HupF_HypC PF01455.13 gi|116753371|ref|YP_842489.1| - 0.095 12.6 0.3 0.23 11.4 0.2 1.6 1 0 0 1 1 1 0 HupF/HypC family HTH_AsnC-type PF13404.1 gi|116753372|ref|YP_842490.1| - 2.9e-10 39.5 2.1 3.5e-10 39.2 0.1 2.2 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|116753372|ref|YP_842490.1| - 3.1e-07 29.6 0.2 1.1e-06 27.8 0.1 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|116753372|ref|YP_842490.1| - 0.0019 17.9 0.1 0.0042 16.8 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|116753372|ref|YP_842490.1| - 0.0032 16.9 0.0 0.0053 16.2 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain MarR_2 PF12802.2 gi|116753372|ref|YP_842490.1| - 0.0064 16.1 0.1 0.011 15.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.1 gi|116753372|ref|YP_842490.1| - 0.033 13.3 0.0 0.13 11.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.5 gi|116753372|ref|YP_842490.1| - 0.056 13.0 0.1 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|116753372|ref|YP_842490.1| - 0.088 13.1 0.0 0.27 11.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|116753372|ref|YP_842490.1| - 0.09 12.4 0.1 0.21 11.2 0.1 1.7 1 1 0 1 1 1 0 HTH domain AsnC_trans_reg PF01037.16 gi|116753372|ref|YP_842490.1| - 0.1 12.3 0.1 0.22 11.2 0.0 1.6 1 1 0 1 1 1 0 AsnC family MarR PF01047.17 gi|116753372|ref|YP_842490.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family GlutR_N PF05201.10 gi|116753373|ref|YP_842491.1| - 1.3e-37 128.6 1.4 1.7e-37 128.3 0.1 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|116753373|ref|YP_842491.1| - 2.4e-35 121.5 0.1 2.4e-35 121.5 0.1 2.1 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|116753373|ref|YP_842491.1| - 1.8e-23 82.4 6.7 4.2e-23 81.1 4.7 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|116753373|ref|YP_842491.1| - 2.1e-05 24.8 0.4 8.1e-05 22.9 0.1 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|116753373|ref|YP_842491.1| - 0.0063 16.5 0.1 0.021 14.8 0.0 1.9 1 1 0 1 1 1 1 NADH(P)-binding DEAD_2 PF06733.10 gi|116753373|ref|YP_842491.1| - 0.0087 15.4 0.0 0.022 14.1 0.0 1.6 1 0 0 1 1 1 1 DEAD_2 THF_DHG_CYH_C PF02882.14 gi|116753373|ref|YP_842491.1| - 0.016 14.2 0.3 0.13 11.3 0.2 2.3 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain OCD_Mu_crystall PF02423.10 gi|116753373|ref|YP_842491.1| - 0.017 13.8 0.0 0.036 12.8 0.0 1.5 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family DUF2115 PF09888.4 gi|116753373|ref|YP_842491.1| - 0.023 14.7 2.7 0.039 14.0 1.9 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) ThiF PF00899.16 gi|116753373|ref|YP_842491.1| - 0.048 13.4 0.2 0.27 11.0 0.1 2.3 2 0 0 2 2 2 0 ThiF family LVIVD PF08309.6 gi|116753373|ref|YP_842491.1| - 0.13 11.2 0.0 0.26 10.2 0.0 1.5 1 0 0 1 1 1 0 LVIVD repeat ALAD PF00490.16 gi|116753374|ref|YP_842492.1| - 1.9e-143 477.2 0.1 2.1e-143 477.0 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase TraB PF01963.12 gi|116753376|ref|YP_842494.1| - 0.00012 21.6 0.1 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 TraB family GSH-S_ATP PF02955.11 gi|116753376|ref|YP_842494.1| - 0.023 13.8 0.1 0.035 13.2 0.0 1.4 1 1 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain DUF3517 PF12030.3 gi|116753376|ref|YP_842494.1| - 0.038 12.5 0.2 0.05 12.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3517) GvpH PF05455.6 gi|116753377|ref|YP_842495.1| - 1.2e-05 25.0 0.1 1.6e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 GvpH HSP20 PF00011.16 gi|116753377|ref|YP_842495.1| - 3e-05 23.8 0.1 0.015 15.1 0.0 2.4 1 1 1 2 2 2 2 Hsp20/alpha crystallin family MtrG PF04210.8 gi|116753377|ref|YP_842495.1| - 0.11 12.2 0.1 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Sugarporin_N PF11471.3 gi|116753377|ref|YP_842495.1| - 0.11 12.1 0.4 0.2 11.3 0.3 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension Apolipoprotein PF01442.13 gi|116753378|ref|YP_842496.1| - 0.69 9.3 4.4 0.83 9.1 3.1 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain GvpL_GvpF PF06386.6 gi|116753379|ref|YP_842497.1| - 3.2e-39 135.0 0.1 1.1e-18 67.7 0.1 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF Transket_pyr PF02779.19 gi|116753379|ref|YP_842497.1| - 0.14 11.6 0.0 0.37 10.2 0.0 1.7 1 1 1 2 2 2 0 Transketolase, pyrimidine binding domain GvpO PF05800.6 gi|116753380|ref|YP_842498.1| - 2.8e-34 117.0 0.1 3e-34 116.9 0.1 1.0 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO AAA_5 PF07728.9 gi|116753382|ref|YP_842500.1| - 1.1e-16 60.8 0.0 1.1e-15 57.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|116753382|ref|YP_842500.1| - 4.5e-06 26.8 0.0 9.6e-06 25.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|116753382|ref|YP_842500.1| - 0.0002 21.4 0.0 0.0005 20.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|116753382|ref|YP_842500.1| - 0.00078 20.2 0.0 0.0019 19.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|116753382|ref|YP_842500.1| - 0.001 18.2 0.0 0.011 14.7 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_25 PF13481.1 gi|116753382|ref|YP_842500.1| - 0.0015 17.9 0.0 0.0043 16.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|116753382|ref|YP_842500.1| - 0.0032 17.0 0.0 0.061 12.9 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|116753382|ref|YP_842500.1| - 0.0033 17.7 0.0 0.01 16.1 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_16 PF13191.1 gi|116753382|ref|YP_842500.1| - 0.0034 17.3 0.0 0.0083 16.1 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|116753382|ref|YP_842500.1| - 0.0038 16.6 0.0 0.0074 15.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein IPT PF01745.11 gi|116753382|ref|YP_842500.1| - 0.0042 16.2 0.0 0.0084 15.3 0.0 1.5 1 0 0 1 1 1 1 Isopentenyl transferase AAA_28 PF13521.1 gi|116753382|ref|YP_842500.1| - 0.011 15.6 0.1 0.038 13.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.8 gi|116753382|ref|YP_842500.1| - 0.014 14.1 0.0 0.14 10.8 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus CbbQ_C PF08406.5 gi|116753382|ref|YP_842500.1| - 0.016 15.2 0.1 0.027 14.4 0.1 1.4 1 0 0 1 1 1 0 CbbQ/NirQ/NorQ C-terminal Sigma54_activ_2 PF14532.1 gi|116753382|ref|YP_842500.1| - 0.018 15.1 0.0 0.039 13.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_33 PF13671.1 gi|116753382|ref|YP_842500.1| - 0.019 14.8 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|116753382|ref|YP_842500.1| - 0.019 14.8 0.0 0.04 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|116753382|ref|YP_842500.1| - 0.024 14.2 0.0 0.092 12.4 0.0 2.0 2 0 0 2 2 2 0 NACHT domain UPF0079 PF02367.12 gi|116753382|ref|YP_842500.1| - 0.025 14.2 0.1 2.3 7.8 0.0 2.9 3 0 0 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|116753382|ref|YP_842500.1| - 0.027 14.6 0.0 0.063 13.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|116753382|ref|YP_842500.1| - 0.038 13.6 0.0 0.075 12.7 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase RuvB_N PF05496.7 gi|116753382|ref|YP_842500.1| - 0.057 12.4 0.0 0.086 11.8 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus PhoH PF02562.11 gi|116753382|ref|YP_842500.1| - 0.075 12.2 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_18 PF13238.1 gi|116753382|ref|YP_842500.1| - 0.088 13.1 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain Apolipoprotein PF01442.13 gi|116753383|ref|YP_842501.1| - 0.0001 21.8 15.7 0.017 14.6 2.0 2.5 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain WXG100 PF06013.7 gi|116753383|ref|YP_842501.1| - 0.012 15.6 2.3 0.16 12.0 0.1 3.3 1 1 1 3 3 3 0 Proteins of 100 residues with WXG DUF4546 PF15079.1 gi|116753383|ref|YP_842501.1| - 0.045 12.9 3.8 0.46 9.5 0.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4546) Tektin PF03148.9 gi|116753383|ref|YP_842501.1| - 0.089 11.3 8.0 0.39 9.2 1.0 2.8 1 1 2 3 3 3 0 Tektin family AAA_13 PF13166.1 gi|116753383|ref|YP_842501.1| - 0.09 11.2 1.9 0.17 10.3 0.4 1.7 1 1 0 1 1 1 0 AAA domain EAP30 PF04157.11 gi|116753383|ref|YP_842501.1| - 0.19 10.8 7.8 1.6 7.8 0.3 3.7 2 1 2 4 4 4 0 EAP30/Vps36 family Flagellin_N PF00669.15 gi|116753383|ref|YP_842501.1| - 0.25 11.1 6.5 0.65 9.8 0.1 3.4 2 1 1 3 3 3 0 Bacterial flagellin N-terminal helical region DUF3135 PF11333.3 gi|116753383|ref|YP_842501.1| - 0.42 10.8 3.1 1.9 8.7 0.1 3.0 4 0 0 4 4 4 0 Protein of unknown function (DUF3135) DUF334 PF03904.8 gi|116753383|ref|YP_842501.1| - 0.46 9.7 5.7 4.9 6.4 0.1 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF334) DUF2937 PF11157.3 gi|116753383|ref|YP_842501.1| - 0.75 9.0 6.7 0.68 9.2 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2937) ApoLp-III PF07464.6 gi|116753383|ref|YP_842501.1| - 1.9 8.4 11.4 0.31 11.0 1.4 3.4 2 1 1 3 3 3 0 Apolipophorin-III precursor (apoLp-III) COG2 PF06148.6 gi|116753383|ref|YP_842501.1| - 2.1 8.2 9.8 2 8.3 0.2 3.6 2 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF883 PF05957.8 gi|116753383|ref|YP_842501.1| - 9.7 6.6 21.0 0.76 10.2 0.6 4.0 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF883) Gas_vesicle PF00741.13 gi|116753384|ref|YP_842502.1| - 3.4e-16 58.8 8.0 4.4e-16 58.4 5.5 1.1 1 0 0 1 1 1 1 Gas vesicle protein DUF2283 PF10049.4 gi|116753384|ref|YP_842502.1| - 0.13 12.1 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Gas_vesicle PF00741.13 gi|116753385|ref|YP_842503.1| - 3.2e-16 58.9 8.0 4.1e-16 58.5 5.5 1.1 1 0 0 1 1 1 1 Gas vesicle protein DUF2283 PF10049.4 gi|116753385|ref|YP_842503.1| - 0.12 12.2 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Gas_vesicle PF00741.13 gi|116753386|ref|YP_842504.1| - 3.2e-16 58.9 8.0 4.1e-16 58.5 5.5 1.1 1 0 0 1 1 1 1 Gas vesicle protein DUF2283 PF10049.4 gi|116753386|ref|YP_842504.1| - 0.12 12.2 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Gas_vesicle PF00741.13 gi|116753387|ref|YP_842505.1| - 3.2e-16 58.9 8.0 4.1e-16 58.5 5.5 1.1 1 0 0 1 1 1 1 Gas vesicle protein DUF2283 PF10049.4 gi|116753387|ref|YP_842505.1| - 0.12 12.2 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Response_reg PF00072.19 gi|116753388|ref|YP_842506.1| - 3.1e-30 104.4 0.1 3.4e-30 104.3 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.14 gi|116753388|ref|YP_842506.1| - 0.047 13.5 0.0 0.059 13.2 0.0 1.2 1 0 0 1 1 1 0 B12 binding domain DUF162 PF02589.10 gi|116753388|ref|YP_842506.1| - 0.069 12.6 0.0 0.097 12.1 0.0 1.3 1 1 0 1 1 1 0 Uncharacterised ACR, YkgG family COG1556 B12-binding_2 PF02607.12 gi|116753388|ref|YP_842506.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain HATPase_c PF02518.21 gi|116753389|ref|YP_842507.1| - 1.9e-30 104.8 0.0 3.5e-30 103.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|116753389|ref|YP_842507.1| - 3.6e-18 65.3 0.8 8.5e-18 64.1 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|116753389|ref|YP_842507.1| - 3.5e-11 43.1 0.0 5.3e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|116753389|ref|YP_842507.1| - 3.9e-08 33.6 0.0 9.7e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.1 gi|116753389|ref|YP_842507.1| - 1.5e-05 25.2 0.0 3.5e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|116753389|ref|YP_842507.1| - 1.6e-05 24.4 0.0 0.00038 20.0 0.0 2.4 2 0 0 2 2 2 1 GHKL domain PAS PF00989.19 gi|116753389|ref|YP_842507.1| - 6.5e-05 22.6 0.0 0.00017 21.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|116753389|ref|YP_842507.1| - 0.014 15.0 0.2 0.028 14.0 0.2 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|116753389|ref|YP_842507.1| - 0.021 14.5 0.0 0.041 13.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Colicin_immun PF09204.5 gi|116753389|ref|YP_842507.1| - 0.029 14.4 0.2 0.18 11.8 0.0 2.3 2 1 0 2 2 2 0 Bacterial self-protective colicin-like immunity PAS_8 PF13188.1 gi|116753389|ref|YP_842507.1| - 0.08 12.8 0.0 0.28 11.1 0.0 1.9 1 0 0 1 1 1 0 PAS domain DUF77 PF01910.12 gi|116753389|ref|YP_842507.1| - 0.089 12.4 0.1 0.7 9.5 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function DUF77 DUF835 PF05763.7 gi|116753390|ref|YP_842508.1| - 3.3e-36 123.8 0.0 4.3e-36 123.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF835) PadR PF03551.9 gi|116753391|ref|YP_842509.1| - 7.4e-16 57.6 0.1 9.9e-16 57.2 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Replic_Relax PF13814.1 gi|116753391|ref|YP_842509.1| - 0.023 14.5 0.1 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_45 PF14947.1 gi|116753391|ref|YP_842509.1| - 0.035 13.9 0.1 0.061 13.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix RQC PF09382.5 gi|116753391|ref|YP_842509.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 RQC domain HTH_27 PF13463.1 gi|116753391|ref|YP_842509.1| - 0.12 12.7 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain KaiC PF06745.8 gi|116753392|ref|YP_842510.1| - 3.7e-26 91.6 0.0 4.6e-26 91.3 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|116753392|ref|YP_842510.1| - 3.3e-10 39.6 0.0 4.4e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|116753392|ref|YP_842510.1| - 0.00063 18.1 0.1 0.00069 18.0 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein GvpG PF05120.7 gi|116753393|ref|YP_842511.1| - 2.1e-09 37.0 1.3 2.6e-09 36.7 0.9 1.1 1 0 0 1 1 1 1 Gas vesicle protein G Retrotrans_gag PF03732.12 gi|116753393|ref|YP_842511.1| - 0.16 12.0 0.7 0.2 11.7 0.5 1.2 1 0 0 1 1 1 0 Retrotransposon gag protein Gas_vesicle PF00741.13 gi|116753394|ref|YP_842512.1| - 8.9e-17 60.6 5.4 1.2e-16 60.3 3.8 1.2 1 0 0 1 1 1 1 Gas vesicle protein zf-ribbon_3 PF13248.1 gi|116753394|ref|YP_842512.1| - 0.0021 17.2 3.0 0.0041 16.2 2.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Cys_rich_CPCC PF14206.1 gi|116753394|ref|YP_842512.1| - 0.0054 16.2 2.2 0.0054 16.2 1.5 1.5 2 0 0 2 2 2 1 Cysteine-rich CPCC DZR PF12773.2 gi|116753394|ref|YP_842512.1| - 0.039 13.7 2.6 0.064 13.0 1.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|116753394|ref|YP_842512.1| - 0.11 11.9 4.8 0.7 9.4 0.4 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.1 gi|116753394|ref|YP_842512.1| - 0.48 9.9 7.3 3.4 7.2 5.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|116753394|ref|YP_842512.1| - 1 9.0 7.3 3.2 7.5 5.0 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Gas_vesicle PF00741.13 gi|116753395|ref|YP_842513.1| - 2.5e-16 59.2 10.1 5e-16 58.2 5.2 2.1 2 0 0 2 2 2 1 Gas vesicle protein bPH_3 PF14470.1 gi|116753395|ref|YP_842513.1| - 0.15 12.2 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial PH domain GvpK PF05121.7 gi|116753396|ref|YP_842514.1| - 1.7e-17 62.9 5.5 2e-17 62.7 3.8 1.1 1 0 0 1 1 1 1 Gas vesicle protein K BAG PF02179.11 gi|116753396|ref|YP_842514.1| - 0.015 15.4 0.6 0.028 14.5 0.4 1.5 1 1 0 1 1 1 0 BAG domain GvpL_GvpF PF06386.6 gi|116753397|ref|YP_842515.1| - 3.8e-54 183.9 0.0 8.4e-54 182.7 0.0 1.5 2 0 0 2 2 2 1 Gas vesicle synthesis protein GvpL/GvpF YpjP PF14005.1 gi|116753397|ref|YP_842515.1| - 0.0069 16.1 0.2 0.046 13.4 0.0 2.2 2 0 0 2 2 2 1 YpjP-like protein DUF45 PF01863.12 gi|116753397|ref|YP_842515.1| - 0.16 11.7 1.0 0.51 10.0 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF45 DsbD PF02683.10 gi|116753398|ref|YP_842516.1| - 0.077 12.5 1.0 0.32 10.5 0.1 1.9 2 0 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region DUF1275 PF06912.6 gi|116753398|ref|YP_842516.1| - 0.087 12.0 1.4 0.95 8.6 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1275) Sigma70_r4 PF04545.11 gi|116753398|ref|YP_842516.1| - 0.097 11.9 0.1 0.23 10.7 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 PRC PF05239.11 gi|116753400|ref|YP_842518.1| - 2.6e-14 52.8 0.8 3e-14 52.6 0.6 1.1 1 0 0 1 1 1 1 PRC-barrel domain AAA PF00004.24 gi|116753401|ref|YP_842519.1| - 3.2e-100 331.5 0.0 7.6e-49 165.2 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|116753401|ref|YP_842519.1| - 2.3e-28 97.9 0.0 1.2e-27 95.7 0.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|116753401|ref|YP_842519.1| - 1.8e-15 56.6 0.0 9.3e-07 28.1 0.0 3.3 2 2 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|116753401|ref|YP_842519.1| - 6.5e-15 54.5 0.1 5.6e-14 51.5 0.1 2.5 2 1 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|116753401|ref|YP_842519.1| - 3.9e-14 53.0 0.0 7e-06 26.1 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain AAA_5 PF07728.9 gi|116753401|ref|YP_842519.1| - 4.5e-13 49.1 0.2 2e-05 24.3 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|116753401|ref|YP_842519.1| - 5e-13 49.9 0.1 9.1e-05 23.2 0.0 3.8 3 1 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|116753401|ref|YP_842519.1| - 2.1e-12 47.2 0.4 0.00043 20.4 0.0 4.0 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|116753401|ref|YP_842519.1| - 8e-12 45.3 0.0 2.7e-05 24.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|116753401|ref|YP_842519.1| - 4e-11 42.2 0.0 9.4e-05 21.2 0.0 2.7 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|116753401|ref|YP_842519.1| - 7e-10 38.9 0.0 0.0014 18.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|116753401|ref|YP_842519.1| - 2.2e-09 37.3 0.0 0.00047 20.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|116753401|ref|YP_842519.1| - 7e-09 35.7 0.0 0.016 14.8 0.0 3.5 2 1 1 3 3 3 2 Archaeal ATPase AAA_19 PF13245.1 gi|116753401|ref|YP_842519.1| - 9.9e-09 34.8 0.6 0.0053 16.4 0.1 3.0 2 0 0 2 2 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|116753401|ref|YP_842519.1| - 2e-08 33.8 0.3 0.007 15.8 0.0 3.0 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|116753401|ref|YP_842519.1| - 4.1e-08 33.6 0.0 0.015 15.5 0.0 2.9 3 0 0 3 3 2 2 AAA domain Zeta_toxin PF06414.7 gi|116753401|ref|YP_842519.1| - 6.8e-08 31.8 0.0 0.012 14.7 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_25 PF13481.1 gi|116753401|ref|YP_842519.1| - 1.4e-07 31.0 4.6 0.014 14.7 0.1 4.0 2 2 1 3 3 3 2 AAA domain AAA_28 PF13521.1 gi|116753401|ref|YP_842519.1| - 7.9e-07 29.1 0.0 0.017 15.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|116753401|ref|YP_842519.1| - 8.1e-07 28.4 0.2 0.042 13.0 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|116753401|ref|YP_842519.1| - 2.8e-06 27.4 0.0 0.11 12.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase KaiC PF06745.8 gi|116753401|ref|YP_842519.1| - 6.9e-06 25.3 0.4 0.26 10.3 0.0 3.4 2 1 1 3 3 3 2 KaiC Parvo_NS1 PF01057.12 gi|116753401|ref|YP_842519.1| - 1.1e-05 24.4 0.1 0.092 11.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.21 gi|116753401|ref|YP_842519.1| - 1.2e-05 24.8 0.0 0.26 10.7 0.0 2.8 3 0 0 3 3 2 2 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|116753401|ref|YP_842519.1| - 1.4e-05 25.1 0.0 0.098 12.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|116753401|ref|YP_842519.1| - 4.2e-05 23.2 0.6 0.21 11.1 0.1 2.4 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|116753401|ref|YP_842519.1| - 4.6e-05 22.5 0.0 0.21 10.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|116753401|ref|YP_842519.1| - 5.2e-05 22.2 0.0 0.24 10.2 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_3 PF07726.6 gi|116753401|ref|YP_842519.1| - 0.0001 21.9 0.0 0.37 10.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|116753401|ref|YP_842519.1| - 0.0001 21.6 0.4 0.46 9.6 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein DUF815 PF05673.8 gi|116753401|ref|YP_842519.1| - 0.00013 21.0 0.0 0.44 9.4 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) SKI PF01202.17 gi|116753401|ref|YP_842519.1| - 0.00017 21.5 0.0 0.78 9.5 0.0 2.6 2 0 0 2 2 2 2 Shikimate kinase ABC_tran PF00005.22 gi|116753401|ref|YP_842519.1| - 0.00036 20.8 0.0 0.57 10.4 0.0 2.5 2 0 0 2 2 2 1 ABC transporter AAA_11 PF13086.1 gi|116753401|ref|YP_842519.1| - 0.00067 19.2 0.0 1.2 8.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain IPT PF01745.11 gi|116753401|ref|YP_842519.1| - 0.00071 18.8 0.7 0.56 9.3 0.0 2.7 3 0 0 3 3 2 1 Isopentenyl transferase Cytidylate_kin2 PF13189.1 gi|116753401|ref|YP_842519.1| - 0.00072 19.5 0.0 0.25 11.2 0.0 2.3 2 0 0 2 2 2 1 Cytidylate kinase-like family ATP-synt_ab PF00006.20 gi|116753401|ref|YP_842519.1| - 0.00072 19.1 0.0 0.15 11.5 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Vps4_C PF09336.5 gi|116753401|ref|YP_842519.1| - 0.0014 18.4 0.0 0.74 9.7 0.0 2.8 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain NACHT PF05729.7 gi|116753401|ref|YP_842519.1| - 0.0015 18.2 0.3 3.1 7.4 0.0 3.5 4 0 0 4 4 4 0 NACHT domain KAP_NTPase PF07693.9 gi|116753401|ref|YP_842519.1| - 0.0018 17.3 0.0 0.14 11.0 0.0 2.7 2 1 0 3 3 3 1 KAP family P-loop domain AAA_30 PF13604.1 gi|116753401|ref|YP_842519.1| - 0.002 17.7 0.0 2.7 7.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|116753401|ref|YP_842519.1| - 0.0021 17.8 0.1 1.7 8.3 0.0 3.1 2 1 1 3 3 3 1 NTPase Bac_DnaA PF00308.13 gi|116753401|ref|YP_842519.1| - 0.0025 17.4 0.0 0.94 9.0 0.0 3.1 2 2 0 2 2 2 1 Bacterial dnaA protein ResIII PF04851.10 gi|116753401|ref|YP_842519.1| - 0.0026 17.6 0.0 0.83 9.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UPF0079 PF02367.12 gi|116753401|ref|YP_842519.1| - 0.015 14.9 0.1 5 6.7 0.0 2.7 2 1 1 3 3 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_23 PF13476.1 gi|116753401|ref|YP_842519.1| - 0.028 14.7 0.1 13 6.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|116753401|ref|YP_842519.1| - 0.042 12.7 0.0 2.4 6.9 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein DEAD PF00270.24 gi|116753401|ref|YP_842519.1| - 0.055 12.9 0.8 72 2.8 0.0 3.8 2 2 0 4 4 4 0 DEAD/DEAH box helicase Guanylate_kin PF00625.16 gi|116753401|ref|YP_842519.1| - 0.059 12.8 0.1 36 3.7 0.0 3.6 3 1 1 4 4 4 0 Guanylate kinase CPT PF07931.7 gi|116753401|ref|YP_842519.1| - 0.072 12.7 0.0 12 5.4 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein YCII PF03795.9 gi|116753401|ref|YP_842519.1| - 0.087 13.0 0.0 0.39 10.9 0.0 2.1 2 0 0 2 2 1 0 YCII-related domain KTI12 PF08433.5 gi|116753401|ref|YP_842519.1| - 0.17 11.1 0.0 18 4.3 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DAP3 PF10236.4 gi|116753401|ref|YP_842519.1| - 0.3 9.9 0.0 13 4.6 0.0 2.6 3 0 0 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 PAD_porph PF04371.10 gi|116753402|ref|YP_842520.1| - 6e-113 377.2 0.0 8e-113 376.8 0.0 1.2 1 0 0 1 1 1 1 Porphyromonas-type peptidyl-arginine deiminase CN_hydrolase PF00795.17 gi|116753402|ref|YP_842520.1| - 6.5e-36 123.4 0.0 9.5e-36 122.8 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Ribosomal_S3Ae PF01015.13 gi|116753403|ref|YP_842521.1| - 3.3e-74 248.4 0.4 3.6e-74 248.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family HisG PF01634.13 gi|116753404|ref|YP_842522.1| - 1.4e-40 138.5 0.0 2e-40 138.0 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|116753404|ref|YP_842522.1| - 1.3e-24 85.8 0.6 5.1e-24 84.0 0.0 2.1 2 0 0 2 2 2 1 HisG, C-terminal domain Beta-Casp PF10996.3 gi|116753406|ref|YP_842524.1| - 3.1e-34 117.6 0.0 6.9e-34 116.5 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|116753406|ref|YP_842524.1| - 2.5e-22 79.5 0.4 4.7e-22 78.5 0.3 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|116753406|ref|YP_842524.1| - 1.8e-12 46.8 0.0 5.5e-12 45.2 0.0 1.9 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|116753406|ref|YP_842524.1| - 4.1e-08 33.0 0.1 1.4e-07 31.2 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|116753406|ref|YP_842524.1| - 0.00011 21.6 2.9 0.00096 18.6 0.6 3.1 1 1 1 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|116753406|ref|YP_842524.1| - 0.00042 20.0 0.0 0.0015 18.2 0.0 1.9 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|116753406|ref|YP_842524.1| - 0.0014 18.1 0.1 0.0053 16.3 0.1 2.0 1 0 0 1 1 1 1 KH domain KH_4 PF13083.1 gi|116753406|ref|YP_842524.1| - 0.0015 18.1 0.1 0.0036 16.9 0.1 1.7 1 0 0 1 1 1 1 KH domain Proteasome PF00227.21 gi|116753407|ref|YP_842525.1| - 1.3e-51 174.6 0.1 1.4e-51 174.4 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Ammonium_transp PF00909.16 gi|116753408|ref|YP_842526.1| - 6.4e-128 426.6 42.7 7.2e-128 426.4 29.6 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|116753409|ref|YP_842527.1| - 6.8e-32 109.9 1.1 7.6e-32 109.8 0.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II AcetylCoA_hyd_C PF13336.1 gi|116753410|ref|YP_842528.1| - 2.2e-60 202.8 0.0 3.8e-60 202.0 0.0 1.3 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|116753410|ref|YP_842528.1| - 4.6e-41 140.7 0.0 2.5e-40 138.3 0.0 2.0 2 0 0 2 2 2 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.19 gi|116753410|ref|YP_842528.1| - 4.3e-12 45.8 0.0 9.9e-12 44.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|116753410|ref|YP_842528.1| - 1.6e-09 38.0 0.0 2.9e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|116753410|ref|YP_842528.1| - 9.6e-09 35.3 0.0 1.9e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|116753410|ref|YP_842528.1| - 5.1e-07 29.7 0.0 1.4e-06 28.3 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|116753410|ref|YP_842528.1| - 2e-05 24.2 0.0 4.6e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein CoA_trans PF01144.18 gi|116753410|ref|YP_842528.1| - 2.1e-05 23.8 0.0 0.033 13.3 0.0 2.6 2 0 0 2 2 2 2 Coenzyme A transferase DeoRC PF00455.17 gi|116753410|ref|YP_842528.1| - 0.00024 20.7 0.0 0.0057 16.3 0.0 3.1 4 0 0 4 4 4 1 DeoR C terminal sensor domain Acetyltransf_10 PF13673.1 gi|116753410|ref|YP_842528.1| - 0.00075 19.6 0.0 0.0031 17.6 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|116753410|ref|YP_842528.1| - 0.0039 17.0 0.0 0.0087 15.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|116753410|ref|YP_842528.1| - 0.04 13.8 0.0 0.38 10.6 0.0 2.4 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase TPR_1 PF00515.23 gi|116753411|ref|YP_842529.1| - 8.5e-85 275.2 1.8 4.6e-10 38.6 0.0 10.3 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_11 PF13414.1 gi|116753411|ref|YP_842529.1| - 5.1e-78 256.7 9.5 5.6e-15 54.7 0.0 6.6 1 1 4 7 7 7 7 TPR repeat TPR_2 PF07719.12 gi|116753411|ref|YP_842529.1| - 5.4e-71 228.9 6.8 1.2e-08 34.1 0.0 10.4 11 0 0 11 11 10 10 Tetratricopeptide repeat TPR_16 PF13432.1 gi|116753411|ref|YP_842529.1| - 2.5e-55 184.1 2.9 1.7e-09 38.0 0.0 7.2 3 2 3 7 7 7 7 Tetratricopeptide repeat TPR_12 PF13424.1 gi|116753411|ref|YP_842529.1| - 1.3e-52 175.6 5.6 4.1e-10 39.4 0.1 7.2 2 2 7 9 9 9 9 Tetratricopeptide repeat TPR_8 PF13181.1 gi|116753411|ref|YP_842529.1| - 8.5e-51 165.9 0.7 1.4e-06 27.6 0.0 10.4 7 3 4 11 11 10 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|116753411|ref|YP_842529.1| - 4.8e-50 163.6 0.1 1.4e-05 24.8 0.0 10.3 9 1 1 10 10 10 8 Tetratricopeptide repeat TPR_14 PF13428.1 gi|116753411|ref|YP_842529.1| - 1.7e-45 149.3 11.5 3.6e-05 24.0 0.0 9.5 1 1 7 9 9 9 9 Tetratricopeptide repeat TPR_19 PF14559.1 gi|116753411|ref|YP_842529.1| - 1.6e-37 127.6 0.2 1.4e-07 31.7 0.0 6.3 4 1 2 6 6 6 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|116753411|ref|YP_842529.1| - 1.6e-34 114.9 8.1 0.00041 19.9 0.0 10.2 10 1 0 10 10 10 7 Tetratricopeptide repeat TPR_9 PF13371.1 gi|116753411|ref|YP_842529.1| - 5e-33 112.7 21.6 1.9e-08 34.0 1.1 6.9 2 2 6 8 8 8 8 Tetratricopeptide repeat TPR_6 PF13174.1 gi|116753411|ref|YP_842529.1| - 3.1e-28 96.2 0.6 0.0078 16.6 0.0 10.5 10 1 0 10 10 10 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|116753411|ref|YP_842529.1| - 2.8e-27 94.6 3.4 1e-06 28.8 0.0 5.7 2 1 4 6 6 6 4 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.1 gi|116753411|ref|YP_842529.1| - 8e-18 64.0 1.2 0.051 13.4 0.0 7.9 8 0 0 8 8 8 4 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.1 gi|116753411|ref|YP_842529.1| - 7.8e-15 54.6 0.8 0.0036 16.4 0.0 6.1 3 2 4 7 7 7 3 Tetratricopeptide repeat BTAD PF03704.12 gi|116753411|ref|YP_842529.1| - 1.7e-14 54.3 8.7 0.011 15.9 0.2 5.5 2 2 3 6 6 6 4 Bacterial transcriptional activator domain TPR_10 PF13374.1 gi|116753411|ref|YP_842529.1| - 7.9e-13 47.8 15.0 0.16 11.9 0.0 8.8 9 0 0 9 9 9 3 Tetratricopeptide repeat MIT PF04212.13 gi|116753411|ref|YP_842529.1| - 2.8e-11 43.1 12.8 0.32 10.9 0.0 8.0 7 1 1 8 8 8 3 MIT (microtubule interacting and transport) domain TPR_3 PF07720.7 gi|116753411|ref|YP_842529.1| - 1.7e-10 40.4 1.0 0.61 9.9 0.0 6.7 7 0 0 7 7 6 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|116753411|ref|YP_842529.1| - 3.5e-10 39.2 0.0 0.0037 16.0 0.0 4.4 1 1 2 4 4 4 2 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|116753411|ref|YP_842529.1| - 5.1e-10 39.3 6.7 0.067 13.0 0.1 6.3 2 2 4 6 6 6 2 Domain of Unknown Function (DUF3856) TPR_20 PF14561.1 gi|116753411|ref|YP_842529.1| - 5.4e-10 39.2 0.0 0.3 11.2 0.0 5.9 3 2 1 6 6 6 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|116753411|ref|YP_842529.1| - 1.4e-07 31.2 5.9 1.6 9.3 0.1 7.9 8 1 1 9 9 7 1 Tetratricopeptide repeat TPR_5 PF12688.2 gi|116753411|ref|YP_842529.1| - 4e-07 30.1 2.6 0.0046 16.9 0.0 4.4 3 2 2 6 6 5 1 Tetratrico peptide repeat Coatomer_E PF04733.9 gi|116753411|ref|YP_842529.1| - 6e-07 28.9 0.1 0.39 9.8 0.0 4.9 1 1 3 5 5 5 1 Coatomer epsilon subunit PPR PF01535.15 gi|116753411|ref|YP_842529.1| - 1e-05 25.1 6.0 13 6.0 0.0 7.5 7 0 0 7 7 7 0 PPR repeat TOM20_plant PF06552.7 gi|116753411|ref|YP_842529.1| - 2.7e-05 23.8 0.8 23 4.5 0.0 6.1 3 2 2 5 5 5 0 Plant specific mitochondrial import receptor subunit TOM20 Alkyl_sulf_dimr PF14863.1 gi|116753411|ref|YP_842529.1| - 0.00023 21.3 0.1 3.9 7.6 0.0 4.4 2 2 1 6 6 6 0 Alkyl sulfatase dimerisation DUF627 PF04781.7 gi|116753411|ref|YP_842529.1| - 0.00037 20.0 0.1 4.2 7.0 0.0 4.5 6 1 0 6 6 4 0 Protein of unknown function (DUF627) RPN7 PF10602.4 gi|116753411|ref|YP_842529.1| - 0.0014 18.0 5.3 4.1 6.7 0.0 6.0 4 2 3 7 7 7 0 26S proteasome subunit RPN7 FAT PF02259.18 gi|116753411|ref|YP_842529.1| - 0.0018 17.3 0.0 2 7.3 0.0 3.7 1 1 1 2 2 2 1 FAT domain PPTA PF01239.17 gi|116753411|ref|YP_842529.1| - 0.002 17.4 0.4 50 3.4 0.0 6.0 8 0 0 8 8 7 0 Protein prenyltransferase alpha subunit repeat ChAPs PF09295.5 gi|116753411|ref|YP_842529.1| - 0.003 16.4 0.0 0.21 10.3 0.0 3.2 3 1 1 4 4 4 1 ChAPs (Chs5p-Arf1p-binding proteins) TPR_21 PF09976.4 gi|116753411|ref|YP_842529.1| - 0.004 17.1 0.4 24 4.8 0.1 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat SNAP PF14938.1 gi|116753411|ref|YP_842529.1| - 0.0067 15.6 5.0 1.1 8.3 0.5 5.2 3 1 1 4 4 4 1 Soluble NSF attachment protein, SNAP Type_III_YscG PF09477.5 gi|116753411|ref|YP_842529.1| - 0.037 14.1 0.5 9.4 6.3 0.0 3.2 2 1 1 3 3 3 0 Bacterial type II secretion system chaperone protein (type_III_yscG) Ubiq-assoc PF09145.5 gi|116753411|ref|YP_842529.1| - 0.089 12.6 3.9 3.9 7.4 0.0 3.9 4 1 1 5 5 3 0 Ubiquitin-associated DUF1896 PF08989.5 gi|116753411|ref|YP_842529.1| - 0.11 12.4 0.3 48 3.7 0.0 3.4 3 1 1 4 4 3 0 Domain of unknown function (DUF1896) Pribosyltran PF00156.22 gi|116753413|ref|YP_842531.1| - 7.4e-23 80.6 0.4 1.1e-22 80.0 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|116753413|ref|YP_842531.1| - 0.00083 18.6 0.1 0.0012 18.0 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.1 gi|116753413|ref|YP_842531.1| - 0.0012 18.6 0.2 0.0021 17.8 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.1 gi|116753413|ref|YP_842531.1| - 0.0018 17.5 0.3 0.05 12.8 0.2 2.2 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_11 PF08279.7 gi|116753413|ref|YP_842531.1| - 0.016 14.8 0.2 0.038 13.6 0.1 1.7 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.1 gi|116753413|ref|YP_842531.1| - 0.016 14.8 0.0 0.042 13.5 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_7 PF02796.10 gi|116753413|ref|YP_842531.1| - 0.042 13.7 0.1 0.082 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|116753413|ref|YP_842531.1| - 0.05 12.9 0.0 0.11 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family GntR PF00392.16 gi|116753413|ref|YP_842531.1| - 0.064 12.6 0.3 0.28 10.6 0.1 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family DUF1188 PF06690.6 gi|116753413|ref|YP_842531.1| - 0.07 12.2 0.1 0.1 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) PIN PF01850.16 gi|116753414|ref|YP_842532.1| - 1.8e-06 28.2 0.5 2.4e-06 27.8 0.3 1.2 1 0 0 1 1 1 1 PIN domain UPF0278 PF08745.6 gi|116753414|ref|YP_842532.1| - 9.1e-05 21.7 0.4 0.00019 20.7 0.3 1.7 1 1 0 1 1 1 1 UPF0278 family RecR PF02132.10 gi|116753414|ref|YP_842532.1| - 0.017 14.5 0.6 0.051 13.0 0.1 2.1 2 0 0 2 2 2 0 RecR protein Prok-RING_1 PF14446.1 gi|116753414|ref|YP_842532.1| - 0.045 13.4 0.8 0.075 12.7 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Rad50_zn_hook PF04423.9 gi|116753414|ref|YP_842532.1| - 0.13 11.7 0.3 0.13 11.7 0.2 3.0 2 1 1 3 3 3 0 Rad50 zinc hook motif DZR PF12773.2 gi|116753414|ref|YP_842532.1| - 0.14 11.9 2.3 0.36 10.7 1.6 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|116753414|ref|YP_842532.1| - 1.3 8.3 6.8 8.7 5.6 4.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|116753414|ref|YP_842532.1| - 2 8.1 7.2 0.3 10.8 0.9 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zinc_ribbon_2 PF13240.1 gi|116753414|ref|YP_842532.1| - 2.9 7.4 6.2 1.6e+02 1.9 4.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|116753414|ref|YP_842532.1| - 3.1 7.5 5.9 1.5 8.6 0.5 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|116753414|ref|YP_842532.1| - 3.7 7.5 5.6 9.7 6.2 0.2 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|116753414|ref|YP_842532.1| - 6.1 6.4 8.1 10 5.6 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CbiQ PF02361.11 gi|116753415|ref|YP_842533.1| - 7.6e-32 110.6 14.2 1.2e-31 110.0 9.8 1.2 1 0 0 1 1 1 1 Cobalt transport protein Bunya_G2 PF03563.8 gi|116753415|ref|YP_842533.1| - 8.7 5.1 8.1 14 4.4 5.6 1.2 1 0 0 1 1 1 0 Bunyavirus glycoprotein G2 ABC_tran PF00005.22 gi|116753416|ref|YP_842534.1| - 3.4e-32 111.6 0.0 5e-32 111.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116753416|ref|YP_842534.1| - 8.7e-18 65.2 1.0 1.1e-15 58.3 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|116753416|ref|YP_842534.1| - 1.1e-09 37.8 0.0 2.5e-05 23.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|116753416|ref|YP_842534.1| - 2.3e-08 33.5 0.0 5.2e-08 32.3 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|116753416|ref|YP_842534.1| - 4.3e-07 29.3 0.0 8.7e-07 28.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|116753416|ref|YP_842534.1| - 0.0012 18.8 0.1 0.007 16.3 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|116753416|ref|YP_842534.1| - 0.0016 18.7 0.0 0.0022 18.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|116753416|ref|YP_842534.1| - 0.004 17.0 0.0 0.05 13.5 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Pup PF05639.6 gi|116753416|ref|YP_842534.1| - 0.026 14.9 0.9 0.058 13.8 0.6 1.5 1 0 0 1 1 1 0 Pup-like protein AAA_28 PF13521.1 gi|116753416|ref|YP_842534.1| - 0.028 14.4 0.0 0.13 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|116753416|ref|YP_842534.1| - 0.048 13.3 0.1 0.19 11.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain FtsK_SpoIIIE PF01580.13 gi|116753416|ref|YP_842534.1| - 0.052 13.0 0.0 0.2 11.1 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family Arch_ATPase PF01637.13 gi|116753416|ref|YP_842534.1| - 0.072 12.7 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|116753416|ref|YP_842534.1| - 0.084 12.6 0.1 0.24 11.1 0.0 1.7 2 0 0 2 2 1 0 Part of AAA domain AAA_5 PF07728.9 gi|116753416|ref|YP_842534.1| - 0.09 12.5 0.0 0.22 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|116753416|ref|YP_842534.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TGS PF02824.16 gi|116753417|ref|YP_842535.1| - 9.3e-20 70.2 0.0 2.1e-19 69.1 0.0 1.7 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|116753417|ref|YP_842535.1| - 1.1e-05 25.3 0.0 3e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase ArgK PF03308.11 gi|116753417|ref|YP_842535.1| - 0.00022 20.1 0.1 0.2 10.4 0.1 2.4 2 0 0 2 2 2 2 ArgK protein FeoB_N PF02421.13 gi|116753417|ref|YP_842535.1| - 0.00032 20.0 0.0 0.012 14.9 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B ABC_tran PF00005.22 gi|116753417|ref|YP_842535.1| - 0.0016 18.7 0.9 0.0039 17.5 0.0 2.1 3 0 0 3 3 3 1 ABC transporter GTP_EFTU PF00009.22 gi|116753417|ref|YP_842535.1| - 0.0017 17.8 0.4 0.42 10.0 0.0 3.2 2 2 1 3 3 3 1 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|116753417|ref|YP_842535.1| - 0.0042 16.2 0.0 0.0072 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_PrkA PF08298.6 gi|116753417|ref|YP_842535.1| - 0.015 14.0 0.0 0.022 13.4 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain cobW PF02492.14 gi|116753417|ref|YP_842535.1| - 0.019 14.3 0.1 0.067 12.6 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.12 gi|116753417|ref|YP_842535.1| - 0.02 14.4 0.0 0.53 9.7 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_29 PF13555.1 gi|116753417|ref|YP_842535.1| - 0.021 14.3 0.8 0.043 13.3 0.6 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|116753417|ref|YP_842535.1| - 0.028 13.5 0.0 0.049 12.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|116753417|ref|YP_842535.1| - 0.031 14.1 0.3 0.073 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|116753417|ref|YP_842535.1| - 0.033 14.0 1.5 0.66 9.7 0.0 2.4 2 0 0 2 2 2 0 Dynamin family Miro PF08477.8 gi|116753417|ref|YP_842535.1| - 0.037 14.5 0.0 0.082 13.3 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein SRPRB PF09439.5 gi|116753417|ref|YP_842535.1| - 0.047 12.9 1.6 0.06 12.5 0.0 1.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DivIC PF04977.10 gi|116753417|ref|YP_842535.1| - 0.095 12.2 0.7 0.24 10.9 0.5 1.8 1 0 0 1 1 1 0 Septum formation initiator Spore_IV_A PF09547.5 gi|116753417|ref|YP_842535.1| - 0.1 11.2 0.3 0.18 10.4 0.2 1.3 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) AAA_16 PF13191.1 gi|116753417|ref|YP_842535.1| - 0.1 12.5 0.1 0.26 11.2 0.1 1.7 1 0 0 1 1 1 0 AAA ATPase domain DUF724 PF05266.9 gi|116753417|ref|YP_842535.1| - 0.7 9.4 3.1 1 8.9 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF1192 PF06698.6 gi|116753417|ref|YP_842535.1| - 1.8 8.4 13.5 2.7 7.8 2.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) CMD PF02627.15 gi|116753418|ref|YP_842536.1| - 3.8e-16 58.7 0.0 5.2e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family tRNA_deacylase PF04414.7 gi|116753419|ref|YP_842537.1| - 1.6e-52 177.7 0.0 1.9e-52 177.4 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase MarR PF01047.17 gi|116753420|ref|YP_842538.1| - 0.00055 19.5 0.0 0.12 12.0 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_3 PF01381.17 gi|116753420|ref|YP_842538.1| - 0.0047 16.7 0.0 0.69 9.7 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_36 PF13730.1 gi|116753420|ref|YP_842538.1| - 0.0089 16.1 0.4 2.2 8.4 0.1 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|116753420|ref|YP_842538.1| - 0.009 15.3 0.1 0.04 13.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.7 gi|116753420|ref|YP_842538.1| - 0.039 13.7 0.0 0.097 12.5 0.0 1.8 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_23 PF13384.1 gi|116753420|ref|YP_842538.1| - 0.05 13.2 0.0 8.4 6.2 0.0 2.9 2 0 0 2 2 2 0 Homeodomain-like domain MarR_2 PF12802.2 gi|116753420|ref|YP_842538.1| - 0.066 12.8 0.0 6.3 6.5 0.0 2.5 2 0 0 2 2 2 0 MarR family TrmB PF01978.14 gi|116753420|ref|YP_842538.1| - 0.096 12.4 0.0 5.4 6.7 0.0 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF1013 PF06242.6 gi|116753420|ref|YP_842538.1| - 0.16 11.9 0.0 16 5.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1013) PurS PF02700.9 gi|116753421|ref|YP_842539.1| - 2e-10 40.4 0.3 6.5e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.1 gi|116753422|ref|YP_842540.1| - 1.5e-52 178.0 0.0 1.8e-52 177.8 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|116753422|ref|YP_842540.1| - 2e-10 40.4 0.2 2.9e-10 39.9 0.1 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|116753422|ref|YP_842540.1| - 1e-07 31.7 0.0 1.2e-06 28.2 0.0 2.3 1 1 1 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|116753422|ref|YP_842540.1| - 1.9e-07 30.6 0.0 2.7e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family SNO PF01174.14 gi|116753422|ref|YP_842540.1| - 1.1e-05 25.2 0.0 2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family DUF4066 PF13278.1 gi|116753422|ref|YP_842540.1| - 3.9e-05 22.9 0.0 8.2e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|116753422|ref|YP_842540.1| - 0.0021 17.5 0.0 0.0042 16.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase C26 AIRS_C PF02769.17 gi|116753423|ref|YP_842541.1| - 8.8e-37 126.4 0.0 2e-18 66.8 0.0 2.5 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|116753423|ref|YP_842541.1| - 4.4e-33 113.3 0.2 4.7e-18 65.2 0.1 2.6 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain Epimerase_2 PF02350.14 gi|116753423|ref|YP_842541.1| - 0.061 12.0 0.0 0.099 11.3 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase DUF3220 PF11516.3 gi|116753424|ref|YP_842542.1| - 0.13 12.2 0.1 18 5.3 0.0 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3120) GDPD PF03009.12 gi|116753425|ref|YP_842543.1| - 1.8e-40 139.0 0.0 2.7e-28 99.1 0.0 2.1 1 1 0 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family zf-like PF04071.7 gi|116753425|ref|YP_842543.1| - 1.2e-30 105.0 5.1 2e-30 104.3 3.5 1.3 1 0 0 1 1 1 1 Cysteine-rich small domain GDPD_2 PF13653.1 gi|116753425|ref|YP_842543.1| - 9.2e-07 28.8 0.3 3.5e-06 27.0 0.2 2.1 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family SLA_LP_auto_ag PF05889.8 gi|116753426|ref|YP_842544.1| - 4.1e-48 163.7 0.0 6.5e-48 163.1 0.0 1.3 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|116753426|ref|YP_842544.1| - 5.4e-13 48.4 0.0 7.7e-13 47.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|116753426|ref|YP_842544.1| - 6.7e-10 38.4 0.0 9.3e-10 37.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|116753426|ref|YP_842544.1| - 0.00047 19.2 0.0 0.0021 17.1 0.0 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|116753426|ref|YP_842544.1| - 0.0012 18.0 0.0 0.0016 17.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|116753426|ref|YP_842544.1| - 0.0061 14.8 0.0 0.009 14.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|116753426|ref|YP_842544.1| - 0.0078 14.8 0.0 0.011 14.2 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Pyridoxal_deC PF00282.14 gi|116753426|ref|YP_842544.1| - 0.045 12.2 0.0 0.067 11.6 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Herpes_UL33 PF03581.8 gi|116753427|ref|YP_842545.1| - 0.04 13.8 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus UL33-like protein DRTGG PF07085.7 gi|116753427|ref|YP_842545.1| - 0.063 12.8 0.1 0.078 12.5 0.0 1.1 1 0 0 1 1 1 0 DRTGG domain Ribophorin_II PF05817.9 gi|116753427|ref|YP_842545.1| - 0.15 10.2 0.0 0.16 10.1 0.0 1.0 1 0 0 1 1 1 0 Oligosaccharyltransferase subunit Ribophorin II CbiX PF01903.12 gi|116753428|ref|YP_842546.1| - 6.7e-26 90.4 0.0 7.6e-26 90.2 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|116753428|ref|YP_842546.1| - 2.7e-05 23.4 0.0 3.1e-05 23.1 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|116753428|ref|YP_842546.1| - 0.082 11.8 0.0 0.1 11.5 0.0 1.1 1 0 0 1 1 1 0 Ferrochelatase Mur_ligase_M PF08245.7 gi|116753429|ref|YP_842547.1| - 3.7e-08 33.6 0.0 5.5e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Oxidored_nitro PF00148.14 gi|116753430|ref|YP_842548.1| - 4.4e-20 71.6 0.0 7.8e-20 70.8 0.0 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SHOCT PF09851.4 gi|116753430|ref|YP_842548.1| - 0.032 13.6 1.0 0.083 12.3 0.7 1.8 1 0 0 1 1 1 0 Short C-terminal domain DUF1805 PF08827.6 gi|116753431|ref|YP_842549.1| - 1e-24 86.1 0.0 1.4e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) IMS PF00817.15 gi|116753431|ref|YP_842549.1| - 0.0016 18.2 0.0 0.0016 18.2 0.0 1.2 1 0 0 1 1 1 1 impB/mucB/samB family Radical_SAM PF04055.16 gi|116753432|ref|YP_842550.1| - 4.1e-12 46.5 0.0 6.7e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|116753432|ref|YP_842550.1| - 2.2e-05 24.4 0.0 0.00019 21.4 0.0 2.2 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|116753432|ref|YP_842550.1| - 0.0063 16.6 0.0 0.037 14.1 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|116753432|ref|YP_842550.1| - 0.1 12.8 0.0 17 5.6 0.0 2.5 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HMGL-like PF00682.14 gi|116753433|ref|YP_842551.1| - 1.7e-60 204.6 0.6 1.7e-60 204.6 0.4 1.6 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|116753433|ref|YP_842551.1| - 9.2e-33 112.8 0.5 1.9e-32 111.8 0.3 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain TPP_enzyme_N PF02776.13 gi|116753434|ref|YP_842552.1| - 1.5e-61 206.8 0.1 3.9e-61 205.5 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|116753434|ref|YP_842552.1| - 2.9e-52 176.3 0.0 1.1e-51 174.3 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|116753434|ref|YP_842552.1| - 4.4e-52 175.4 0.2 8.4e-52 174.5 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|116753434|ref|YP_842552.1| - 0.023 14.2 0.5 0.047 13.1 0.3 1.4 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALS_ss_C PF10369.4 gi|116753435|ref|YP_842553.1| - 9.6e-32 108.5 5.2 1.5e-31 107.8 1.6 2.0 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|116753435|ref|YP_842553.1| - 1.6e-21 75.8 0.9 1.2e-19 69.8 0.0 2.6 2 1 0 2 2 2 1 ACT domain ACT PF01842.20 gi|116753435|ref|YP_842553.1| - 9.5e-15 53.7 0.9 2.1e-14 52.6 0.1 2.0 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|116753435|ref|YP_842553.1| - 1.9e-08 34.5 0.3 1.9e-08 34.5 0.2 2.0 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|116753435|ref|YP_842553.1| - 1.1e-05 25.0 1.0 0.2 11.4 0.2 3.3 2 2 0 2 2 2 2 ACT domain NIL PF09383.5 gi|116753435|ref|YP_842553.1| - 0.0013 18.3 0.0 0.34 10.5 0.0 2.4 2 0 0 2 2 2 2 NIL domain Saccharop_dh_N PF04455.7 gi|116753435|ref|YP_842553.1| - 0.013 15.6 0.3 0.058 13.5 0.1 2.0 1 1 1 2 2 2 0 LOR/SDH bifunctional enzyme conserved region Acylphosphatase PF00708.13 gi|116753435|ref|YP_842553.1| - 0.015 15.3 0.2 2.9 8.0 0.0 2.3 2 0 0 2 2 2 0 Acylphosphatase KH_1 PF00013.24 gi|116753435|ref|YP_842553.1| - 0.085 12.5 0.5 0.53 9.9 0.2 2.3 2 0 0 2 2 2 0 KH domain IlvN PF07991.7 gi|116753436|ref|YP_842554.1| - 1.1e-73 246.0 0.0 1.7e-73 245.4 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|116753436|ref|YP_842554.1| - 6.2e-55 185.1 0.2 8.5e-55 184.6 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|116753436|ref|YP_842554.1| - 6.1e-08 32.0 0.0 1e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|116753436|ref|YP_842554.1| - 8.1e-06 25.7 0.0 1.7e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|116753436|ref|YP_842554.1| - 0.00047 20.0 0.0 0.00084 19.2 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|116753436|ref|YP_842554.1| - 0.00059 20.2 0.0 0.0012 19.1 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DUF3085 PF11284.3 gi|116753436|ref|YP_842554.1| - 0.066 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3085) ApbA PF02558.11 gi|116753436|ref|YP_842554.1| - 0.096 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrmB PF01978.14 gi|116753437|ref|YP_842555.1| - 0.0012 18.4 0.1 0.0026 17.4 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|116753437|ref|YP_842555.1| - 0.011 15.5 0.2 0.022 14.6 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|116753437|ref|YP_842555.1| - 0.045 14.0 0.8 0.25 11.6 0.0 2.3 2 1 1 3 3 3 0 Winged helix DNA-binding domain Ferritin PF00210.19 gi|116753437|ref|YP_842555.1| - 0.062 13.0 0.1 0.084 12.6 0.1 1.3 1 0 0 1 1 1 0 Ferritin-like domain HTH_45 PF14947.1 gi|116753437|ref|YP_842555.1| - 0.077 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|116753437|ref|YP_842555.1| - 0.15 11.9 1.9 0.24 11.2 0.1 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain Rubredoxin PF00301.15 gi|116753439|ref|YP_842557.1| - 1.6e-26 91.9 5.2 1.8e-26 91.7 3.6 1.0 1 0 0 1 1 1 1 Rubredoxin zf-ribbon_3 PF13248.1 gi|116753439|ref|YP_842557.1| - 0.001 18.2 0.7 0.077 12.2 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|116753439|ref|YP_842557.1| - 0.0026 17.0 1.9 1.2 8.4 0.0 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|116753439|ref|YP_842557.1| - 0.0075 15.7 2.5 0.25 10.8 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|116753439|ref|YP_842557.1| - 0.0098 15.8 2.2 0.49 10.3 0.0 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-RanBP PF00641.13 gi|116753439|ref|YP_842557.1| - 0.011 14.8 1.7 0.1 11.7 0.1 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn_Tnp_IS1595 PF12760.2 gi|116753439|ref|YP_842557.1| - 0.024 14.4 1.0 0.78 9.5 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|116753439|ref|YP_842557.1| - 0.03 13.7 1.1 0.81 9.2 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Prok-RING_1 PF14446.1 gi|116753439|ref|YP_842557.1| - 0.034 13.8 0.6 0.95 9.2 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|116753439|ref|YP_842557.1| - 0.039 13.6 2.2 2.7 7.7 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Desulfoferrod_N PF06397.7 gi|116753439|ref|YP_842557.1| - 0.043 13.1 0.6 0.043 13.1 0.4 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-H2C2_2 PF13465.1 gi|116753439|ref|YP_842557.1| - 0.049 13.9 1.6 3.9 7.9 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-nanos PF05741.8 gi|116753439|ref|YP_842557.1| - 0.06 13.3 0.5 6.4 6.8 0.0 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain zf-Sec23_Sec24 PF04810.10 gi|116753439|ref|YP_842557.1| - 0.063 12.8 0.1 9 5.9 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DUF2296 PF10058.4 gi|116753439|ref|YP_842557.1| - 0.067 12.9 0.7 0.78 9.5 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DZR PF12773.2 gi|116753439|ref|YP_842557.1| - 0.073 12.8 1.2 0.68 9.8 0.8 2.0 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|116753439|ref|YP_842557.1| - 0.083 12.5 0.8 1.3 8.7 0.6 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.1 gi|116753439|ref|YP_842557.1| - 0.15 11.6 1.4 1.1 8.9 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-HIT PF04438.11 gi|116753439|ref|YP_842557.1| - 0.15 11.6 1.3 3 7.5 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger C1_3 PF07649.7 gi|116753439|ref|YP_842557.1| - 0.15 12.0 2.3 0.98 9.5 0.3 2.1 2 0 0 2 2 2 0 C1-like domain zf-C2H2 PF00096.21 gi|116753439|ref|YP_842557.1| - 0.16 12.3 2.4 5.3 7.6 0.4 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|116753439|ref|YP_842557.1| - 0.17 12.3 0.8 14 6.3 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger UPF0547 PF10571.4 gi|116753439|ref|YP_842557.1| - 0.23 11.1 4.4 2.1 8.1 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4428 PF14471.1 gi|116753439|ref|YP_842557.1| - 0.28 10.9 2.0 0.87 9.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) TFIIS_C PF01096.13 gi|116753439|ref|YP_842557.1| - 0.5 10.0 2.5 13 5.5 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) PHD PF00628.24 gi|116753439|ref|YP_842557.1| - 0.51 10.0 2.7 0.59 9.8 0.2 1.9 1 1 1 2 2 2 0 PHD-finger zf-NADH-PPase PF09297.6 gi|116753439|ref|YP_842557.1| - 0.51 9.8 2.2 6.2 6.4 0.4 2.3 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1610 PF07754.6 gi|116753439|ref|YP_842557.1| - 0.53 10.4 3.4 0.94 9.6 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) ADK_lid PF05191.9 gi|116753439|ref|YP_842557.1| - 1.4 8.6 5.1 18 5.1 3.5 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-tcix PF14952.1 gi|116753439|ref|YP_842557.1| - 3.3 7.1 4.6 6.2 6.2 0.4 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Ferritin PF00210.19 gi|116753440|ref|YP_842558.1| - 1.7e-40 138.0 0.2 1.9e-40 137.8 0.1 1.0 1 0 0 1 1 1 1 Ferritin-like domain Acid_phosphat_B PF03767.9 gi|116753440|ref|YP_842558.1| - 0.061 12.6 0.1 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Ribosomal_S13_N PF08069.7 gi|116753442|ref|YP_842560.1| - 2e-24 85.1 0.3 4.2e-24 84.1 0.2 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|116753442|ref|YP_842560.1| - 2.4e-14 52.8 0.1 1.5e-07 31.0 0.1 2.2 2 0 0 2 2 2 2 Ribosomal protein S15 DHHA1 PF02272.14 gi|116753443|ref|YP_842561.1| - 4e-15 55.2 0.3 6.8e-14 51.3 0.1 2.5 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|116753443|ref|YP_842561.1| - 1.5e-10 40.8 0.0 2.6e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 DHH family ATG2_CAD PF13329.1 gi|116753444|ref|YP_842562.1| - 0.076 12.5 0.1 0.081 12.4 0.0 1.1 1 0 0 1 1 1 0 Autophagy-related protein 2 CAD motif tRNA-synt_2b PF00587.20 gi|116753445|ref|YP_842563.1| - 1.2e-11 44.5 0.1 1.8e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.15 gi|116753445|ref|YP_842563.1| - 0.023 13.8 0.0 0.041 13.0 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) AMMECR1 PF01871.12 gi|116753446|ref|YP_842564.1| - 2.5e-59 199.2 0.0 2.9e-59 199.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 DUF1614 PF07758.6 gi|116753447|ref|YP_842565.1| - 8.7e-49 165.6 12.9 1.2e-48 165.1 8.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) DUF4014 PF13198.1 gi|116753447|ref|YP_842565.1| - 3.7 8.0 5.0 7.7 6.9 3.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4014) DUF116 PF01976.12 gi|116753448|ref|YP_842566.1| - 1.7e-48 164.1 0.0 1.9e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 DUF373 PF04123.8 gi|116753449|ref|YP_842567.1| - 5.2e-123 410.4 0.4 5.9e-123 410.2 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) MutS_II PF05188.12 gi|116753449|ref|YP_842567.1| - 0.16 12.0 0.1 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 MutS domain II Aldedh PF00171.17 gi|116753449|ref|YP_842567.1| - 0.19 10.0 0.0 0.34 9.1 0.0 1.3 1 0 0 1 1 1 0 Aldehyde dehydrogenase family DUF165 PF02592.10 gi|116753450|ref|YP_842568.1| - 1.2e-33 116.2 8.3 2.5e-33 115.2 5.7 1.5 1 0 0 1 1 1 1 Uncharacterized ACR, YhhQ family COG1738 TGT PF01702.13 gi|116753451|ref|YP_842569.1| - 2.7e-84 282.1 0.0 3.5e-84 281.8 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase FMN_red PF03358.10 gi|116753452|ref|YP_842570.1| - 1.5e-24 86.2 0.0 1.9e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|116753452|ref|YP_842570.1| - 1.3e-14 54.2 0.0 1.9e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold DUF556 PF04476.8 gi|116753452|ref|YP_842570.1| - 0.041 13.0 0.0 0.063 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF556) DUF2240 PF09999.4 gi|116753454|ref|YP_842572.1| - 1.7e-43 147.5 0.1 2e-43 147.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DAO PF01266.19 gi|116753455|ref|YP_842573.1| - 2.3e-12 46.5 0.3 1.8e-05 23.8 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|116753455|ref|YP_842573.1| - 1.1e-09 37.9 0.0 1.6e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|116753455|ref|YP_842573.1| - 4.1e-09 35.8 0.0 2.5e-05 23.3 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|116753455|ref|YP_842573.1| - 8.2e-08 32.3 0.0 1.3e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|116753455|ref|YP_842573.1| - 7.5e-07 28.1 0.1 0.014 14.0 0.0 3.1 3 0 0 3 3 3 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|116753455|ref|YP_842573.1| - 1.6e-06 27.2 2.3 1.8e-05 23.8 1.4 2.2 1 1 1 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|116753455|ref|YP_842573.1| - 4.1e-06 26.1 0.6 0.00037 19.6 0.1 2.9 2 1 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|116753455|ref|YP_842573.1| - 4.8e-06 25.3 0.1 7.8e-05 21.3 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|116753455|ref|YP_842573.1| - 6e-05 22.0 0.0 8.8e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|116753455|ref|YP_842573.1| - 0.004 17.5 0.0 0.19 12.1 0.0 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|116753455|ref|YP_842573.1| - 0.0046 16.9 0.1 0.016 15.2 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|116753455|ref|YP_842573.1| - 0.029 14.4 0.0 0.04 13.9 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|116753455|ref|YP_842573.1| - 0.12 11.4 0.1 0.24 10.4 0.0 1.5 1 0 0 1 1 1 0 Thi4 family CxxCxxCC PF03692.10 gi|116753456|ref|YP_842574.1| - 0.00021 21.7 6.8 0.00025 21.4 4.7 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Radical_SAM PF04055.16 gi|116753457|ref|YP_842575.1| - 7.4e-09 35.9 0.1 3.6e-08 33.7 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|116753457|ref|YP_842575.1| - 9.5e-06 25.6 0.0 2.7e-05 24.1 0.0 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|116753457|ref|YP_842575.1| - 0.00056 20.0 0.0 0.0013 18.8 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Epimerase PF01370.16 gi|116753458|ref|YP_842576.1| - 8e-63 212.0 0.0 9.5e-63 211.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|116753458|ref|YP_842576.1| - 3.5e-27 94.8 0.0 4.8e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|116753458|ref|YP_842576.1| - 1.3e-14 53.7 0.0 1.3e-13 50.5 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|116753458|ref|YP_842576.1| - 2.6e-13 49.4 0.0 2.4e-11 43.0 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|116753458|ref|YP_842576.1| - 2.8e-12 47.0 0.0 3.4e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|116753458|ref|YP_842576.1| - 2.3e-11 43.1 0.0 3.1e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.20 gi|116753458|ref|YP_842576.1| - 4.6e-07 29.9 0.0 8.2e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|116753458|ref|YP_842576.1| - 2.8e-05 23.9 0.0 4.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Saccharop_dh PF03435.13 gi|116753458|ref|YP_842576.1| - 0.0008 18.4 0.0 0.0011 18.0 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|116753458|ref|YP_842576.1| - 0.0008 18.7 0.0 0.0014 17.9 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|116753458|ref|YP_842576.1| - 0.015 15.3 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain KR PF08659.5 gi|116753458|ref|YP_842576.1| - 0.017 14.8 0.1 0.035 13.7 0.1 1.6 1 1 0 1 1 1 0 KR domain DapB_N PF01113.15 gi|116753458|ref|YP_842576.1| - 0.027 14.4 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Methyltransf_31 PF13847.1 gi|116753458|ref|YP_842576.1| - 0.12 12.0 0.0 0.29 10.7 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain MarR_2 PF12802.2 gi|116753459|ref|YP_842577.1| - 3.3e-07 29.8 0.0 5.3e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|116753459|ref|YP_842577.1| - 6.3e-07 29.1 0.0 1.1e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|116753459|ref|YP_842577.1| - 1.4e-05 24.6 0.0 1.9e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|116753459|ref|YP_842577.1| - 0.00035 19.9 0.0 0.00052 19.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|116753459|ref|YP_842577.1| - 0.001 19.3 0.1 0.0015 18.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|116753459|ref|YP_842577.1| - 0.0042 16.7 0.0 0.0062 16.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|116753459|ref|YP_842577.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain LSM PF01423.17 gi|116753460|ref|YP_842578.1| - 2.4e-16 59.0 1.7 2.7e-16 58.8 1.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|116753460|ref|YP_842578.1| - 0.045 13.6 0.1 0.062 13.2 0.1 1.4 1 1 0 1 1 1 0 Ataxin 2 SM domain NifU PF01106.12 gi|116753461|ref|YP_842579.1| - 1.8e-21 75.6 0.2 2e-21 75.4 0.1 1.0 1 0 0 1 1 1 1 NifU-like domain DUF59 PF01883.14 gi|116753461|ref|YP_842579.1| - 0.00062 19.7 0.0 0.0022 17.9 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function DUF59 DUF3846 PF12957.2 gi|116753461|ref|YP_842579.1| - 0.024 14.3 0.0 0.024 14.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3846) FlaC_arch PF05377.6 gi|116753461|ref|YP_842579.1| - 0.88 9.5 2.9 1.2 9.1 0.6 2.0 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Nit_Regul_Hom PF10126.4 gi|116753462|ref|YP_842580.1| - 1.8e-50 169.3 0.1 2.3e-50 168.9 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII DUF3240 PF11582.3 gi|116753462|ref|YP_842580.1| - 0.058 13.3 0.0 0.46 10.4 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3240) TP_methylase PF00590.15 gi|116753463|ref|YP_842581.1| - 1.2e-23 83.9 0.1 7e-23 81.4 0.1 2.1 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.12 gi|116753464|ref|YP_842582.1| - 6.9e-45 153.0 0.3 8.6e-45 152.7 0.2 1.1 1 0 0 1 1 1 1 CbiD TrkA_C PF02080.16 gi|116753464|ref|YP_842582.1| - 0.069 12.7 0.0 0.19 11.3 0.0 1.8 1 0 0 1 1 1 0 TrkA-C domain CbiC PF02570.10 gi|116753465|ref|YP_842583.1| - 2.3e-58 196.9 2.2 2.6e-58 196.7 1.5 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.15 gi|116753466|ref|YP_842584.1| - 5.2e-64 215.8 0.6 3.9e-38 131.2 0.0 2.0 2 0 0 2 2 2 2 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.3 gi|116753467|ref|YP_842585.1| - 1.4e-27 95.2 0.1 5.5e-27 93.2 0.0 2.0 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|116753467|ref|YP_842585.1| - 2.9e-23 82.4 0.6 4.4e-23 81.8 0.4 1.3 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus Bac_luciferase PF00296.15 gi|116753467|ref|YP_842585.1| - 0.079 12.0 0.4 0.33 10.0 0.3 1.5 1 1 1 2 2 2 0 Luciferase-like monooxygenase Dak1 PF02733.12 gi|116753467|ref|YP_842585.1| - 0.086 11.3 0.4 0.12 10.9 0.3 1.2 1 0 0 1 1 1 0 Dak1 domain TP_methylase PF00590.15 gi|116753468|ref|YP_842586.1| - 3.9e-48 163.9 0.2 4.5e-48 163.7 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|116753468|ref|YP_842586.1| - 0.079 13.1 0.0 0.25 11.4 0.0 1.9 1 1 0 2 2 2 0 Radical SAM superfamily TP_methylase PF00590.15 gi|116753469|ref|YP_842587.1| - 5e-30 104.7 0.0 1.6e-29 103.1 0.0 1.6 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_18 PF12847.2 gi|116753470|ref|YP_842588.1| - 1.7e-09 38.2 0.0 2.5e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116753470|ref|YP_842588.1| - 4.2e-06 26.4 0.0 4.9e-06 26.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|116753470|ref|YP_842588.1| - 5e-06 25.7 0.0 7e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|116753470|ref|YP_842588.1| - 9.9e-06 25.5 0.0 1.7e-05 24.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|116753470|ref|YP_842588.1| - 3.9e-05 24.0 0.0 6.7e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|116753470|ref|YP_842588.1| - 0.00015 21.1 0.0 0.00025 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|116753470|ref|YP_842588.1| - 0.00019 21.7 0.0 0.00026 21.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|116753470|ref|YP_842588.1| - 0.00019 20.6 0.1 0.00027 20.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|116753470|ref|YP_842588.1| - 0.0016 18.0 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.1 gi|116753470|ref|YP_842588.1| - 0.0019 17.9 0.0 0.003 17.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|116753470|ref|YP_842588.1| - 0.013 14.9 0.1 0.019 14.3 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_12 PF08242.7 gi|116753470|ref|YP_842588.1| - 0.036 14.5 0.0 0.1 13.0 0.0 1.7 1 1 1 2 2 2 0 Methyltransferase domain DOT1 PF08123.8 gi|116753470|ref|YP_842588.1| - 0.07 12.4 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_4 PF02390.12 gi|116753470|ref|YP_842588.1| - 0.084 11.9 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase S-layer PF07752.6 gi|116753471|ref|YP_842589.1| - 5.7e-141 468.1 18.0 6.3e-71 238.6 3.3 2.2 2 0 0 2 2 2 2 S-layer protein PEGA PF08308.6 gi|116753471|ref|YP_842589.1| - 4.5e-10 39.1 4.7 0.00073 19.2 0.0 4.3 4 0 0 4 4 4 2 PEGA domain Transglut_C PF00927.17 gi|116753471|ref|YP_842589.1| - 0.00073 19.5 0.9 0.002 18.1 0.1 2.1 2 0 0 2 2 2 1 Transglutaminase family, C-terminal ig like domain CarboxypepD_reg PF13620.1 gi|116753471|ref|YP_842589.1| - 0.00096 19.1 15.2 0.0025 17.8 0.8 5.0 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain tRNA-synt_1c_C PF03950.13 gi|116753471|ref|YP_842589.1| - 0.0016 18.1 0.6 1.1 8.9 0.1 3.5 3 0 0 3 3 3 1 tRNA synthetases class I (E and Q), anti-codon binding domain BiPBP_C PF06832.7 gi|116753471|ref|YP_842589.1| - 0.0057 16.5 0.0 5.3 7.0 0.0 3.1 3 0 0 3 3 3 2 Penicillin-Binding Protein C-terminus Family DUF1533 PF07550.6 gi|116753471|ref|YP_842589.1| - 0.013 15.4 1.5 0.45 10.5 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1533) Y_Y_Y PF07495.8 gi|116753471|ref|YP_842589.1| - 0.024 14.3 0.1 0.2 11.4 0.0 2.6 2 0 0 2 2 2 0 Y_Y_Y domain LRV PF01816.12 gi|116753472|ref|YP_842590.1| - 4.4e-41 136.3 28.8 1.3e-07 31.3 0.2 10.2 9 1 1 10 10 10 8 Leucine rich repeat variant HEAT PF02985.17 gi|116753472|ref|YP_842590.1| - 3.2e-06 26.7 22.3 4.3 7.6 0.0 8.9 9 1 1 10 10 10 4 HEAT repeat HEAT_2 PF13646.1 gi|116753472|ref|YP_842590.1| - 0.0051 17.0 11.4 4.5 7.6 0.6 5.6 2 2 0 2 2 2 2 HEAT repeats DUF4042 PF13251.1 gi|116753472|ref|YP_842590.1| - 0.013 14.9 0.0 0.05 13.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4042) DUF4116 PF13475.1 gi|116753472|ref|YP_842590.1| - 0.042 13.3 0.0 23 4.5 0.0 4.1 5 0 0 5 5 5 0 Domain of unknown function (DUF4116) Myosin_tail_1 PF01576.14 gi|116753473|ref|YP_842591.1| - 0.00041 18.2 3.0 0.00057 17.7 2.1 1.1 1 0 0 1 1 1 1 Myosin tail WEMBL PF05701.6 gi|116753473|ref|YP_842591.1| - 0.00091 17.8 3.1 0.00091 17.8 2.1 1.4 2 0 0 2 2 2 1 Weak chloroplast movement under blue light IncA PF04156.9 gi|116753473|ref|YP_842591.1| - 0.0025 17.4 5.0 0.0025 17.4 3.5 1.6 2 0 0 2 2 2 1 IncA protein CENP-F_leu_zip PF10473.4 gi|116753473|ref|YP_842591.1| - 0.0047 16.7 7.7 0.01 15.7 5.4 1.5 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4164 PF13747.1 gi|116753473|ref|YP_842591.1| - 0.0077 16.3 4.8 0.0077 16.3 3.3 1.7 2 0 0 2 2 1 1 Domain of unknown function (DUF4164) AAA_13 PF13166.1 gi|116753473|ref|YP_842591.1| - 0.014 13.8 1.7 0.018 13.4 1.2 1.1 1 0 0 1 1 1 0 AAA domain Transposase_22 PF02994.9 gi|116753473|ref|YP_842591.1| - 0.016 13.7 1.8 0.019 13.5 0.6 1.6 2 0 0 2 2 2 0 L1 transposable element RmuC PF02646.11 gi|116753473|ref|YP_842591.1| - 0.028 13.2 0.2 0.049 12.4 0.2 1.3 1 0 0 1 1 1 0 RmuC family KxDL PF10241.4 gi|116753473|ref|YP_842591.1| - 0.11 12.4 2.5 0.1 12.4 0.6 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein DUF972 PF06156.8 gi|116753473|ref|YP_842591.1| - 0.12 12.7 1.8 0.28 11.5 1.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF972) eRF1_2 PF03464.10 gi|116753473|ref|YP_842591.1| - 0.15 12.3 0.5 0.28 11.5 0.0 1.6 2 0 0 2 2 2 0 eRF1 domain 2 DUF1043 PF06295.7 gi|116753473|ref|YP_842591.1| - 0.17 11.4 1.2 0.36 10.4 0.7 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) Spc24 PF08286.6 gi|116753473|ref|YP_842591.1| - 0.22 11.1 1.3 0.38 10.4 0.9 1.4 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 TMPIT PF07851.8 gi|116753473|ref|YP_842591.1| - 0.23 10.5 0.8 0.3 10.0 0.6 1.1 1 0 0 1 1 1 0 TMPIT-like protein DASH_Spc19 PF08287.6 gi|116753473|ref|YP_842591.1| - 0.27 10.8 5.7 0.72 9.4 2.5 2.2 2 0 0 2 2 2 0 Spc19 4HB_MCP_1 PF12729.2 gi|116753473|ref|YP_842591.1| - 0.95 8.7 3.8 1.5 8.1 2.6 1.2 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction ING PF12998.2 gi|116753473|ref|YP_842591.1| - 1 9.6 4.9 7.1 6.9 1.8 2.4 2 0 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Tektin PF03148.9 gi|116753473|ref|YP_842591.1| - 2.1 6.7 8.9 1 7.8 4.8 1.4 2 0 0 2 2 2 0 Tektin family Viral_P18 PF04521.8 gi|116753473|ref|YP_842591.1| - 5.1 6.5 6.5 0.74 9.2 1.6 1.7 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein TBP PF00352.16 gi|116753474|ref|YP_842592.1| - 8.3e-68 223.7 0.2 4.3e-33 112.5 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|116753474|ref|YP_842592.1| - 6.9e-09 35.6 0.0 0.0033 17.4 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3252 PF11623.3 gi|116753474|ref|YP_842592.1| - 0.066 12.6 0.0 11 5.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3252) Peptidase_M17_N PF02789.12 gi|116753474|ref|YP_842592.1| - 0.093 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Cytosol aminopeptidase family, N-terminal domain Peptidase_U32 PF01136.14 gi|116753475|ref|YP_842593.1| - 1.4e-102 341.5 0.0 1.4e-80 269.5 0.0 2.7 2 1 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|116753475|ref|YP_842593.1| - 1.5e-19 70.2 0.0 3e-19 69.2 0.0 1.5 1 0 0 1 1 1 1 Collagenase Cupin_2 PF07883.6 gi|116753476|ref|YP_842594.1| - 1.4e-14 53.3 0.0 2.4e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.2 gi|116753476|ref|YP_842594.1| - 3.4e-09 36.6 0.0 4.9e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|116753476|ref|YP_842594.1| - 2.6e-06 27.1 0.0 3.7e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|116753476|ref|YP_842594.1| - 5.1e-06 26.5 0.0 7.8e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MannoseP_isomer PF01050.13 gi|116753476|ref|YP_842594.1| - 0.011 15.3 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|116753476|ref|YP_842594.1| - 0.016 14.6 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) EutQ PF06249.7 gi|116753476|ref|YP_842594.1| - 0.075 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ AMP-binding PF00501.23 gi|116753477|ref|YP_842595.1| - 5.2e-79 265.5 0.0 6.8e-79 265.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|116753477|ref|YP_842595.1| - 3.4e-20 72.7 0.6 9.4e-20 71.3 0.4 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.2 gi|116753477|ref|YP_842595.1| - 7.1e-10 39.1 8.2 1.5e-09 38.0 5.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|116753477|ref|YP_842595.1| - 4.4e-07 29.2 17.6 9.7e-05 21.8 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|116753477|ref|YP_842595.1| - 4.9e-07 29.4 8.5 1.3e-06 28.0 5.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|116753477|ref|YP_842595.1| - 1.3e-06 28.0 8.8 1.3e-05 24.9 6.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116753477|ref|YP_842595.1| - 4.1e-06 26.3 14.9 0.0061 16.4 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|116753477|ref|YP_842595.1| - 7e-06 26.3 3.2 0.046 14.1 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|116753477|ref|YP_842595.1| - 9e-06 25.3 14.8 0.011 15.5 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|116753477|ref|YP_842595.1| - 1.1e-05 25.3 5.8 2.5e-05 24.1 4.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116753477|ref|YP_842595.1| - 2e-05 24.7 11.3 0.00015 21.9 8.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|116753477|ref|YP_842595.1| - 0.00053 20.1 11.4 0.052 13.9 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|116753477|ref|YP_842595.1| - 0.00058 20.1 9.4 0.15 12.4 7.6 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116753477|ref|YP_842595.1| - 0.00087 19.8 6.4 0.29 11.7 1.0 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|116753477|ref|YP_842595.1| - 0.0024 18.5 10.0 0.45 11.2 7.3 2.5 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|116753477|ref|YP_842595.1| - 0.023 15.0 8.7 0.12 12.7 1.8 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|116753477|ref|YP_842595.1| - 0.042 14.4 18.5 0.51 11.0 3.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|116753478|ref|YP_842596.1| - 9.4e-60 201.9 0.0 1.2e-59 201.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|116753478|ref|YP_842596.1| - 2.4e-05 24.2 0.0 5.2e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|116753478|ref|YP_842596.1| - 0.00016 21.1 0.3 0.00028 20.4 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR PF01558.13 gi|116753479|ref|YP_842597.1| - 4.7e-33 114.5 0.0 8e-33 113.7 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|116753479|ref|YP_842597.1| - 7.6e-23 80.7 0.1 1.3e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain F420_ligase PF01996.11 gi|116753480|ref|YP_842598.1| - 4.7e-66 222.1 0.0 5.4e-66 221.9 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase CofC PF01983.11 gi|116753481|ref|YP_842599.1| - 2.9e-37 127.7 0.0 3.4e-37 127.4 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|116753481|ref|YP_842599.1| - 4.9e-05 23.4 0.0 0.00012 22.1 0.0 1.6 1 1 1 2 2 2 1 MobA-like NTP transferase domain MoeA_N PF03453.12 gi|116753482|ref|YP_842600.1| - 2.3e-52 176.5 0.4 3.5e-52 176.0 0.3 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|116753482|ref|YP_842600.1| - 1.9e-25 88.9 0.0 5.5e-25 87.4 0.0 1.8 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|116753482|ref|YP_842600.1| - 4.3e-15 55.4 0.0 2.7e-14 52.8 0.0 2.3 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) PBP_like PF12727.2 gi|116753482|ref|YP_842600.1| - 1.4e-12 46.9 0.1 5.9e-12 44.9 0.0 2.0 1 1 0 1 1 1 1 PBP superfamily domain Chorismate_synt PF01264.16 gi|116753483|ref|YP_842601.1| - 3.7e-154 512.3 0.1 4.2e-154 512.1 0.1 1.0 1 0 0 1 1 1 1 Chorismate synthase RVT_3 PF13456.1 gi|116753484|ref|YP_842602.1| - 7.5e-17 60.8 0.0 9.4e-17 60.5 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|116753484|ref|YP_842602.1| - 1.1e-10 42.0 0.0 1.2e-10 41.8 0.0 1.1 1 0 0 1 1 1 1 RNase H FMN_red PF03358.10 gi|116753485|ref|YP_842603.1| - 3.3e-32 111.0 0.0 4.3e-32 110.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|116753485|ref|YP_842603.1| - 9.7e-10 38.2 0.0 1.2e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold CxxCxxCC PF03692.10 gi|116753486|ref|YP_842604.1| - 3.7e-13 49.7 0.0 1.3e-12 48.0 0.0 1.8 1 1 1 2 2 2 1 Putative zinc- or iron-chelating domain GATase PF00117.23 gi|116753487|ref|YP_842605.1| - 3.2e-32 111.5 0.0 3.6e-32 111.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|116753487|ref|YP_842605.1| - 1.6e-13 50.6 1.3 6.4e-13 48.6 0.3 2.3 2 1 0 2 2 2 1 Peptidase C26 Metalloenzyme PF01676.13 gi|116753488|ref|YP_842606.1| - 2.1e-85 286.1 0.0 2.4e-85 285.9 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.8 gi|116753488|ref|YP_842606.1| - 4.6e-83 277.9 0.0 6.1e-83 277.5 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Phosphodiest PF01663.17 gi|116753488|ref|YP_842606.1| - 0.0002 20.8 0.0 0.00028 20.3 0.0 1.3 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|116753488|ref|YP_842606.1| - 0.0016 17.6 0.0 0.0023 17.1 0.0 1.4 1 0 0 1 1 1 1 Sulfatase Chitin_bind_4 PF00379.18 gi|116753489|ref|YP_842607.1| - 0.053 13.7 1.7 2.3 8.5 0.0 2.7 3 0 0 3 3 3 0 Insect cuticle protein eIF-1a PF01176.14 gi|116753490|ref|YP_842608.1| - 1.2e-26 91.8 1.2 1.4e-26 91.6 0.8 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF2007 PF09413.5 gi|116753490|ref|YP_842608.1| - 0.097 12.5 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2007) RIO1 PF01163.17 gi|116753491|ref|YP_842609.1| - 2.3e-62 209.6 0.0 3.2e-62 209.2 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|116753491|ref|YP_842609.1| - 5.5e-06 25.7 0.0 9.5e-06 24.9 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|116753491|ref|YP_842609.1| - 6.7e-06 26.0 2.8 0.00014 21.7 0.2 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|116753491|ref|YP_842609.1| - 9.4e-05 21.5 0.1 0.00078 18.5 0.0 2.2 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Hepar_II_III PF07940.8 gi|116753491|ref|YP_842609.1| - 0.091 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Heparinase II/III-like protein KH_1 PF00013.24 gi|116753492|ref|YP_842610.1| - 6.7e-20 70.4 4.1 3.1e-10 39.5 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|116753492|ref|YP_842610.1| - 3e-12 45.9 2.7 2.5e-05 23.8 0.0 2.7 2 1 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|116753492|ref|YP_842610.1| - 2.9e-05 23.5 1.4 0.34 10.5 0.6 2.9 3 0 0 3 3 3 2 KH domain KH_4 PF13083.1 gi|116753492|ref|YP_842610.1| - 0.00066 19.2 2.1 0.49 10.0 0.2 3.3 2 1 1 3 3 3 2 KH domain Peptidase_M50 PF02163.17 gi|116753493|ref|YP_842611.1| - 2.3e-28 98.4 0.0 2.9e-27 94.8 0.0 2.4 3 1 0 3 3 3 1 Peptidase family M50 PDZ_2 PF13180.1 gi|116753493|ref|YP_842611.1| - 3.2e-06 26.9 0.9 1.5e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 PDZ domain PDZ_1 PF12812.2 gi|116753493|ref|YP_842611.1| - 0.18 11.7 0.1 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 PDZ-like domain Hydantoinase_A PF01968.13 gi|116753494|ref|YP_842612.1| - 1.8e-10 40.3 0.3 0.00011 21.4 0.0 2.8 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase MutL PF13941.1 gi|116753494|ref|YP_842612.1| - 0.02 13.2 0.0 0.63 8.2 0.0 2.1 2 0 0 2 2 2 0 MutL protein FrhB_FdhB_C PF04432.8 gi|116753495|ref|YP_842613.1| - 5e-45 152.8 0.0 7.7e-45 152.1 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|116753495|ref|YP_842613.1| - 1.3e-25 89.0 0.6 2.3e-25 88.2 0.4 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_9 PF13187.1 gi|116753495|ref|YP_842613.1| - 0.016 15.4 8.3 1.2 9.4 0.0 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116753495|ref|YP_842613.1| - 0.03 14.3 5.8 5 7.2 0.0 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116753495|ref|YP_842613.1| - 0.069 13.5 6.7 6.3 7.2 2.7 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116753495|ref|YP_842613.1| - 0.68 10.3 9.3 5.5 7.4 0.0 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116753495|ref|YP_842613.1| - 1.4 9.5 7.6 9.4 6.8 1.1 3.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|116753495|ref|YP_842613.1| - 1.7 9.1 9.0 1.8 9.0 2.5 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|116753495|ref|YP_842613.1| - 1.9 8.1 19.6 0.59 9.8 0.3 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116753495|ref|YP_842613.1| - 5.4 7.0 17.4 6.3 6.8 0.4 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|116753495|ref|YP_842613.1| - 6.4 7.3 14.8 0.89 10.0 0.3 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|116753495|ref|YP_842613.1| - 6.9 6.5 15.8 2.3 8.1 7.9 2.3 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|116753495|ref|YP_842613.1| - 9.8 6.6 9.7 22 5.5 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain MMR_HSR1_C PF08438.5 gi|116753496|ref|YP_842614.1| - 9.7e-35 119.0 0.0 1.7e-34 118.2 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|116753496|ref|YP_842614.1| - 6.4e-16 58.3 0.0 2.1e-15 56.6 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|116753496|ref|YP_842614.1| - 1.1e-14 53.9 0.0 2.3e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|116753496|ref|YP_842614.1| - 1.9e-08 33.7 0.0 6.7e-07 28.7 0.0 2.4 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|116753496|ref|YP_842614.1| - 0.03 13.7 0.0 1.4 8.3 0.0 2.6 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.8 gi|116753496|ref|YP_842614.1| - 0.1 12.3 0.1 23 4.8 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF933) GatB_N PF02934.10 gi|116753497|ref|YP_842615.1| - 4.9e-114 380.0 0.0 6.7e-114 379.6 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|116753497|ref|YP_842615.1| - 5.9e-40 136.3 0.0 9.7e-40 135.6 0.0 1.3 1 0 0 1 1 1 1 GatB domain Amidase PF01425.16 gi|116753498|ref|YP_842616.1| - 2e-156 521.3 0.0 2.4e-156 521.0 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|116753499|ref|YP_842617.1| - 1.4e-29 101.7 0.7 1.6e-29 101.4 0.5 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit eIF-5_eIF-2B PF01873.12 gi|116753501|ref|YP_842619.1| - 8.1e-40 135.3 0.0 1.2e-39 134.8 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|116753501|ref|YP_842619.1| - 4.3e-13 48.8 0.6 1.1e-12 47.5 0.5 1.6 2 0 0 2 2 2 1 TRAM domain ZF-HD_dimer PF04770.7 gi|116753501|ref|YP_842619.1| - 0.066 13.2 0.4 0.11 12.5 0.2 1.4 1 0 0 1 1 1 0 ZF-HD protein dimerisation region zf-RanBP PF00641.13 gi|116753501|ref|YP_842619.1| - 0.55 9.3 0.1 0.55 9.3 0.1 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Ribosomal_L16 PF00252.13 gi|116753502|ref|YP_842620.1| - 1.4e-37 128.4 0.0 1.6e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Peptidase_C25 PF01364.13 gi|116753503|ref|YP_842621.1| - 1.1e-40 139.7 0.0 2e-40 138.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family C25 DUF11 PF01345.13 gi|116753503|ref|YP_842621.1| - 0.0007 19.5 0.0 0.0021 18.0 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function DUF11 CHAT PF12770.2 gi|116753503|ref|YP_842621.1| - 0.0029 16.7 0.0 0.005 15.9 0.0 1.4 1 0 0 1 1 1 1 CHAT domain DUF187 PF02638.10 gi|116753503|ref|YP_842621.1| - 0.0068 15.3 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase like GH101 CW_binding_2 PF04122.7 gi|116753503|ref|YP_842621.1| - 0.024 14.8 0.0 0.085 13.0 0.0 1.9 1 0 0 1 1 1 0 Putative cell wall binding repeat 2 GHL6 PF14871.1 gi|116753503|ref|YP_842621.1| - 0.12 12.4 0.0 0.45 10.5 0.0 2.0 2 0 0 2 2 2 0 Hypothetical glycosyl hydrolase 6 CW_binding_2 PF04122.7 gi|116753504|ref|YP_842622.1| - 1.8e-09 37.6 0.6 9.6e-06 25.7 0.0 2.4 2 0 0 2 2 2 2 Putative cell wall binding repeat 2 NPCBM_assoc PF10633.4 gi|116753504|ref|YP_842622.1| - 0.00018 21.4 0.0 0.099 12.7 0.0 3.6 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF1297 PF06973.7 gi|116753505|ref|YP_842623.1| - 2.5e-65 219.3 0.1 3.3e-65 218.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|116753505|ref|YP_842623.1| - 1.9e-42 143.9 0.0 3e-42 143.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.9 gi|116753505|ref|YP_842623.1| - 2.2e-06 27.6 0.0 8.3e-06 25.7 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|116753505|ref|YP_842623.1| - 6e-06 26.1 0.0 0.013 15.2 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|116753505|ref|YP_842623.1| - 0.00022 20.5 0.0 0.00044 19.5 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|116753505|ref|YP_842623.1| - 0.075 12.3 0.3 0.56 9.5 0.0 2.1 2 0 0 2 2 2 0 ATP-grasp domain SIS PF01380.17 gi|116753506|ref|YP_842624.1| - 2.4e-07 30.4 0.0 0.0062 16.1 0.0 3.0 2 1 0 2 2 2 2 SIS domain Lys-AminoMut_A PF09043.6 gi|116753506|ref|YP_842624.1| - 0.086 10.9 0.0 0.13 10.3 0.0 1.2 1 0 0 1 1 1 0 D-Lysine 5,6-aminomutase alpha subunit Metallophos_2 PF12850.2 gi|116753507|ref|YP_842625.1| - 1.9e-24 86.2 0.0 2.3e-24 86.0 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|116753507|ref|YP_842625.1| - 1.5e-06 27.7 1.4 0.0048 16.3 0.1 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase HTH_45 PF14947.1 gi|116753508|ref|YP_842626.1| - 1.8e-25 88.5 0.7 2.1e-25 88.3 0.5 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2250 PF10007.4 gi|116753508|ref|YP_842626.1| - 0.0038 17.1 0.0 0.0045 16.8 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|116753508|ref|YP_842626.1| - 0.0053 16.4 0.0 0.0084 15.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|116753508|ref|YP_842626.1| - 0.028 14.7 0.0 0.067 13.5 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|116753508|ref|YP_842626.1| - 0.031 13.9 0.1 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_24 PF13412.1 gi|116753508|ref|YP_842626.1| - 0.079 12.3 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|116753508|ref|YP_842626.1| - 0.088 12.1 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family SAMP PF05924.6 gi|116753508|ref|YP_842626.1| - 0.1 11.7 0.1 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 SAMP Motif MotA_activ PF09114.5 gi|116753508|ref|YP_842626.1| - 0.13 12.0 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain EMG1 PF03587.9 gi|116753509|ref|YP_842627.1| - 9.3e-51 172.0 0.0 1.1e-50 171.8 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase DUF1126 PF06565.7 gi|116753509|ref|YP_842627.1| - 0.79 9.2 3.1 0.31 10.5 0.2 1.8 2 0 0 2 2 2 0 Repeat of unknown function (DUF1126) Lactamase_B_2 PF12706.2 gi|116753510|ref|YP_842628.1| - 4e-24 85.2 0.7 4.8e-24 84.9 0.5 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|116753510|ref|YP_842628.1| - 1.6e-20 73.5 0.2 2e-20 73.2 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|116753510|ref|YP_842628.1| - 1.2e-08 34.8 0.1 1.8e-08 34.2 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.24 gi|116753511|ref|YP_842629.1| - 8.5e-36 123.0 0.1 3.6e-35 121.0 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|116753511|ref|YP_842629.1| - 6.7e-07 30.1 4.3 3e-06 28.0 0.1 3.0 2 2 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|116753511|ref|YP_842629.1| - 4.1e-05 23.7 1.0 0.0057 16.7 0.1 3.2 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|116753511|ref|YP_842629.1| - 0.0003 20.4 0.0 0.00077 19.1 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|116753511|ref|YP_842629.1| - 0.00033 20.5 0.0 0.0011 18.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|116753511|ref|YP_842629.1| - 0.00057 20.1 1.9 0.0028 17.9 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|116753511|ref|YP_842629.1| - 0.00081 19.1 0.0 0.0038 16.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|116753511|ref|YP_842629.1| - 0.0024 17.8 0.6 0.0065 16.4 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|116753511|ref|YP_842629.1| - 0.0043 16.4 0.4 0.065 12.6 0.0 2.8 2 1 1 3 3 3 1 AAA domain MMR_HSR1 PF01926.18 gi|116753511|ref|YP_842629.1| - 0.0094 15.8 0.0 0.026 14.4 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF815 PF05673.8 gi|116753511|ref|YP_842629.1| - 0.014 14.3 0.0 0.023 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) FtsK_SpoIIIE PF01580.13 gi|116753511|ref|YP_842629.1| - 0.023 14.1 0.1 2.8 7.3 0.0 2.4 2 1 0 2 2 2 0 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|116753511|ref|YP_842629.1| - 0.025 14.5 5.4 0.53 10.2 0.1 3.3 2 1 2 4 4 4 0 AAA ATPase domain ADK PF00406.17 gi|116753511|ref|YP_842629.1| - 0.028 14.3 0.1 4.5 7.1 0.0 2.6 2 0 0 2 2 2 0 Adenylate kinase RuvB_N PF05496.7 gi|116753511|ref|YP_842629.1| - 0.028 13.4 0.0 0.054 12.5 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Zeta_toxin PF06414.7 gi|116753511|ref|YP_842629.1| - 0.053 12.6 0.3 0.52 9.3 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin SKI PF01202.17 gi|116753511|ref|YP_842629.1| - 0.063 13.1 0.3 0.24 11.2 0.0 2.1 2 0 0 2 2 2 0 Shikimate kinase AAA_2 PF07724.9 gi|116753511|ref|YP_842629.1| - 0.073 12.9 0.0 0.35 10.7 0.0 2.3 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_23 PF13476.1 gi|116753511|ref|YP_842629.1| - 0.076 13.3 3.2 4.6 7.5 0.2 2.5 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|116753511|ref|YP_842629.1| - 0.087 12.3 0.0 0.15 11.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|116753511|ref|YP_842629.1| - 0.13 11.4 0.1 0.46 9.6 0.1 2.0 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.9 gi|116753511|ref|YP_842629.1| - 0.13 11.9 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Lipase_GDSL_2 PF13472.1 gi|116753512|ref|YP_842630.1| - 8.8e-32 110.6 0.0 1.1e-31 110.4 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|116753512|ref|YP_842630.1| - 4e-20 72.6 0.0 5.3e-20 72.2 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Trp_syntA PF00290.15 gi|116753513|ref|YP_842631.1| - 1.7e-81 272.5 0.0 2.3e-81 272.1 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|116753513|ref|YP_842631.1| - 7.2e-06 25.4 0.1 3e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|116753513|ref|YP_842631.1| - 0.00011 21.5 0.0 0.00018 20.8 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein TGT PF01702.13 gi|116753513|ref|YP_842631.1| - 0.034 13.4 0.0 0.068 12.4 0.0 1.5 2 0 0 2 2 2 0 Queuine tRNA-ribosyltransferase HMGL-like PF00682.14 gi|116753513|ref|YP_842631.1| - 0.082 12.5 0.0 10 5.7 0.0 2.2 2 0 0 2 2 2 0 HMGL-like ThiG PF05690.9 gi|116753513|ref|YP_842631.1| - 0.083 11.9 0.0 0.14 11.1 0.0 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PALP PF00291.20 gi|116753514|ref|YP_842632.1| - 5.5e-36 124.3 0.3 6.9e-36 124.0 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme MtN3_slv PF03083.11 gi|116753515|ref|YP_842633.1| - 1.1e-09 38.0 2.2 1.3e-09 37.7 1.5 1.0 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PQ-loop PF04193.9 gi|116753515|ref|YP_842633.1| - 6.2e-09 35.2 1.4 6.2e-09 35.2 1.0 2.0 2 0 0 2 2 2 1 PQ loop repeat DUF360 PF04020.8 gi|116753515|ref|YP_842633.1| - 0.035 14.4 0.8 0.042 14.2 0.6 1.1 1 0 0 1 1 1 0 Membrane protein of unknown function DUF1275 PF06912.6 gi|116753515|ref|YP_842633.1| - 0.06 12.5 0.3 0.067 12.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) DDE_Tnp_1_5 PF13737.1 gi|116753517|ref|YP_842635.1| - 1.2e-28 99.4 0.0 2.9e-27 95.0 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|116753517|ref|YP_842635.1| - 1.9e-20 73.3 0.4 4.5e-20 72.1 0.2 1.6 1 1 0 1 1 1 1 Transposase DDE domain rve PF00665.21 gi|116753517|ref|YP_842635.1| - 0.12 12.4 0.1 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain VWA_2 PF13519.1 gi|116753518|ref|YP_842636.1| - 4.7e-33 114.7 0.4 1.6e-24 86.9 0.0 2.2 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA PF00092.23 gi|116753518|ref|YP_842636.1| - 3.7e-23 82.1 0.0 6.9e-16 58.4 0.0 2.4 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_3 PF13768.1 gi|116753518|ref|YP_842636.1| - 1e-09 38.2 0.0 5.4e-08 32.6 0.0 2.5 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|116753518|ref|YP_842636.1| - 0.00012 21.3 0.4 0.012 14.8 0.1 2.3 2 0 0 2 2 2 2 VWA domain containing CoxE-like protein Pentapeptide PF00805.17 gi|116753519|ref|YP_842637.1| - 2.8e-106 345.6 84.1 1.7e-11 43.0 0.5 14.9 8 3 5 14 14 14 14 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|116753519|ref|YP_842637.1| - 4.2e-58 193.0 0.0 1.2e-08 34.6 0.0 7.5 1 1 5 8 8 8 8 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|116753519|ref|YP_842637.1| - 1.8e-44 149.3 0.0 1.9e-05 24.4 0.1 12.1 1 1 10 12 12 12 12 Pentapeptide repeats (9 copies) ABC_sub_bind PF04392.7 gi|116753519|ref|YP_842637.1| - 4.1e-05 22.7 0.0 0.00014 20.9 0.0 1.7 1 1 0 1 1 1 1 ABC transporter substrate binding protein CfAFP PF05264.6 gi|116753519|ref|YP_842637.1| - 0.00013 21.7 0.2 1.8 8.3 0.0 4.2 2 2 4 6 6 6 2 Choristoneura fumiferana antifreeze protein (CfAFP) DUF650 PF04894.7 gi|116753520|ref|YP_842638.1| - 8.5e-92 307.4 0.0 1.2e-91 306.9 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|116753520|ref|YP_842638.1| - 1.4e-37 127.6 0.1 2.5e-37 126.8 0.1 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) DUF1581 PF07619.6 gi|116753520|ref|YP_842638.1| - 0.055 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1581) Radical_SAM PF04055.16 gi|116753521|ref|YP_842639.1| - 5.5e-17 62.4 0.0 1.2e-15 58.0 0.0 2.5 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|116753521|ref|YP_842639.1| - 6e-15 55.1 0.1 1.6e-14 53.8 0.1 1.7 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.16 gi|116753522|ref|YP_842640.1| - 5.2e-13 49.5 2.5 1.4e-12 48.1 0.4 2.5 3 1 0 3 3 3 1 Radical SAM superfamily DUF2284 PF10050.4 gi|116753523|ref|YP_842641.1| - 1e-56 191.1 0.3 1.2e-56 190.9 0.2 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) SAM_adeno_trans PF01887.11 gi|116753524|ref|YP_842642.1| - 3.5e-79 265.4 0.0 4e-79 265.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase T4-Gluco-transf PF09198.5 gi|116753524|ref|YP_842642.1| - 0.019 14.2 0.1 0.041 13.2 0.1 1.4 1 0 0 1 1 1 0 Bacteriophage T4 beta-glucosyltransferase Bac_luciferase PF00296.15 gi|116753525|ref|YP_842643.1| - 4.4e-68 229.6 0.1 5.4e-68 229.3 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF1522 PF07482.6 gi|116753525|ref|YP_842643.1| - 0.2 11.8 1.1 2.9 8.0 0.0 2.7 3 1 0 3 3 3 0 Domain of Unknown Function (DUF1522) CTP_transf_2 PF01467.21 gi|116753526|ref|YP_842644.1| - 5.2e-15 55.8 0.0 6.9e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase DUF521 PF04412.8 gi|116753527|ref|YP_842645.1| - 1.4e-152 507.8 0.0 1.6e-152 507.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.11 gi|116753528|ref|YP_842646.1| - 2.2e-36 123.3 0.2 3.2e-36 122.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF126 SprT-like PF10263.4 gi|116753530|ref|YP_842648.1| - 0.0014 18.3 0.7 0.0016 18.0 0.5 1.1 1 0 0 1 1 1 1 SprT-like family CDO_I PF05995.7 gi|116753530|ref|YP_842648.1| - 0.038 13.1 0.0 0.042 13.0 0.0 1.1 1 0 0 1 1 1 0 Cysteine dioxygenase type I DUF2786 PF10979.3 gi|116753530|ref|YP_842648.1| - 0.074 12.7 0.2 0.074 12.7 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) GXGXG PF01493.14 gi|116753531|ref|YP_842649.1| - 1.8e-38 131.5 7.4 2.3e-38 131.2 5.2 1.1 1 0 0 1 1 1 1 GXGXG motif CcmH PF03918.9 gi|116753531|ref|YP_842649.1| - 0.14 11.1 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Cytochrome C biogenesis protein Glu_synthase PF01645.12 gi|116753532|ref|YP_842650.1| - 3.2e-139 463.9 0.1 3.2e-139 463.9 0.1 1.9 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.9 gi|116753532|ref|YP_842650.1| - 2.6e-11 43.3 0.0 4.7e-10 39.2 0.0 2.3 1 1 0 1 1 1 1 Glutamate synthase central domain FMN_dh PF01070.13 gi|116753532|ref|YP_842650.1| - 3.3e-08 32.7 3.1 3.3e-08 32.7 2.1 2.8 3 1 0 4 4 4 1 FMN-dependent dehydrogenase Fer4_9 PF13187.1 gi|116753532|ref|YP_842650.1| - 1.2e-07 31.8 18.0 1e-06 28.9 8.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain IMPDH PF00478.20 gi|116753532|ref|YP_842650.1| - 3.1e-07 29.6 7.6 3.1e-07 29.6 5.3 1.5 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|116753532|ref|YP_842650.1| - 5.2e-06 25.8 3.7 9.1e-06 25.0 2.6 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_16 PF13484.1 gi|116753532|ref|YP_842650.1| - 0.00012 22.7 0.6 0.00012 22.7 0.4 3.2 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|116753532|ref|YP_842650.1| - 0.00021 21.5 24.6 0.0009 19.5 9.2 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116753532|ref|YP_842650.1| - 0.0006 19.7 19.7 0.0018 18.2 8.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain His_biosynth PF00977.16 gi|116753532|ref|YP_842650.1| - 0.00062 19.1 1.4 0.0021 17.3 0.1 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein Fer4 PF00037.22 gi|116753532|ref|YP_842650.1| - 0.00097 18.6 2.5 0.00097 18.6 1.7 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116753532|ref|YP_842650.1| - 0.0015 18.3 9.2 0.0015 18.3 6.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116753532|ref|YP_842650.1| - 0.0053 16.5 19.9 0.01 15.6 8.7 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain PcrB PF01884.12 gi|116753532|ref|YP_842650.1| - 0.021 14.0 9.1 0.4 9.8 0.7 3.1 1 1 2 3 3 3 0 PcrB family DHO_dh PF01180.16 gi|116753532|ref|YP_842650.1| - 0.037 12.9 5.2 0.13 11.2 3.6 1.9 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase Fer4_17 PF13534.1 gi|116753532|ref|YP_842650.1| - 0.66 10.3 22.0 1.5 9.1 1.6 3.4 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116753532|ref|YP_842650.1| - 5.4 7.1 23.4 0.13 12.2 1.4 3.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|116753532|ref|YP_842650.1| - 6.1 7.4 27.7 0.21 12.0 1.6 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain GATase_2 PF00310.16 gi|116753533|ref|YP_842651.1| - 9e-27 93.7 0.0 1.2e-26 93.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|116753533|ref|YP_842651.1| - 9.5e-13 48.2 0.0 4.3e-12 46.1 0.0 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|116753533|ref|YP_842651.1| - 5.7e-10 39.0 0.0 2.1e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 Glutamine amidotransferase domain DUF3270 PF11674.3 gi|116753535|ref|YP_842653.1| - 0.025 14.5 1.6 0.039 13.9 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3270) tRNA-synt_1d PF00750.14 gi|116753536|ref|YP_842654.1| - 1.8e-55 188.1 0.1 2.4e-55 187.8 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|116753536|ref|YP_842654.1| - 9.6e-31 106.2 0.2 1.3e-29 102.5 0.0 2.5 2 0 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1f PF01921.13 gi|116753536|ref|YP_842654.1| - 2.5e-08 32.9 0.0 0.00076 18.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) Arg_tRNA_synt_N PF03485.11 gi|116753536|ref|YP_842654.1| - 5.3e-08 33.3 0.0 1.2e-07 32.1 0.0 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1g PF09334.6 gi|116753536|ref|YP_842654.1| - 0.00015 20.5 0.1 0.064 11.8 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|116753536|ref|YP_842654.1| - 0.0049 16.0 0.0 0.014 14.5 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|116753536|ref|YP_842654.1| - 0.0069 14.4 0.1 0.011 13.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) MCR_alpha_N PF02745.10 gi|116753536|ref|YP_842654.1| - 0.11 11.7 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, N-terminal domain DUF4139 PF13598.1 gi|116753537|ref|YP_842655.1| - 8.9e-23 81.0 0.3 3.2e-18 66.1 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4139) GDE_N_bis PF14742.1 gi|116753537|ref|YP_842655.1| - 0.16 11.3 0.0 2 7.7 0.0 2.2 1 1 1 2 2 2 0 N-terminal domain of (some) glycogen debranching enzymes ABC_tran PF00005.22 gi|116753538|ref|YP_842656.1| - 2.9e-32 111.8 0.0 4.1e-32 111.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116753538|ref|YP_842656.1| - 2.9e-11 43.8 0.0 0.00019 21.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA PF00004.24 gi|116753538|ref|YP_842656.1| - 1.2e-05 25.5 0.3 0.00013 22.1 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|116753538|ref|YP_842656.1| - 5.9e-05 23.1 0.0 0.0001 22.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|116753538|ref|YP_842656.1| - 0.00015 22.5 0.2 0.00061 20.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|116753538|ref|YP_842656.1| - 0.00058 19.0 0.0 0.46 9.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|116753538|ref|YP_842656.1| - 0.0013 17.9 0.0 0.0021 17.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|116753538|ref|YP_842656.1| - 0.0017 18.6 0.3 0.018 15.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|116753538|ref|YP_842656.1| - 0.0019 18.1 0.2 0.011 15.7 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|116753538|ref|YP_842656.1| - 0.0025 17.9 0.1 0.014 15.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|116753538|ref|YP_842656.1| - 0.0041 16.8 0.1 0.051 13.2 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase PduV-EutP PF10662.4 gi|116753538|ref|YP_842656.1| - 0.0044 16.4 0.0 0.017 14.5 0.0 2.0 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.1 gi|116753538|ref|YP_842656.1| - 0.0073 15.7 0.0 0.015 14.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|116753538|ref|YP_842656.1| - 0.021 14.5 0.0 0.046 13.3 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|116753538|ref|YP_842656.1| - 0.022 14.6 0.1 0.047 13.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|116753538|ref|YP_842656.1| - 0.025 14.0 0.0 0.05 13.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|116753538|ref|YP_842656.1| - 0.031 14.5 0.1 0.051 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|116753538|ref|YP_842656.1| - 0.058 13.1 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|116753538|ref|YP_842656.1| - 0.059 12.7 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein MobB PF03205.9 gi|116753538|ref|YP_842656.1| - 0.064 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|116753538|ref|YP_842656.1| - 0.08 12.3 0.2 0.61 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|116753538|ref|YP_842656.1| - 0.087 12.5 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|116753538|ref|YP_842656.1| - 0.09 11.6 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Miro PF08477.8 gi|116753538|ref|YP_842656.1| - 0.094 13.2 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein Rad17 PF03215.10 gi|116753538|ref|YP_842656.1| - 0.1 11.2 0.1 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein UPF0079 PF02367.12 gi|116753538|ref|YP_842656.1| - 0.12 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase PF01078.16 gi|116753538|ref|YP_842656.1| - 0.12 11.4 0.0 0.51 9.4 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|116753538|ref|YP_842656.1| - 0.13 12.1 0.1 0.4 10.6 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|116753538|ref|YP_842656.1| - 0.14 11.3 0.0 13 4.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain RNA_helicase PF00910.17 gi|116753538|ref|YP_842656.1| - 0.17 12.1 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Fe-ADH_2 PF13685.1 gi|116753539|ref|YP_842657.1| - 2.3e-66 223.6 0.5 2.9e-66 223.3 0.3 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|116753539|ref|YP_842657.1| - 2e-27 95.8 4.5 2.5e-27 95.5 3.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|116753539|ref|YP_842657.1| - 6.9e-07 28.4 0.1 2.1e-06 26.8 0.1 1.7 1 1 0 1 1 1 1 3-dehydroquinate synthase UPF0179 PF03684.8 gi|116753540|ref|YP_842658.1| - 1e-51 174.2 0.7 1.1e-51 174.1 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Radical_SAM PF04055.16 gi|116753541|ref|YP_842659.1| - 1.2e-15 58.0 0.0 6.3e-15 55.7 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily DUF385 PF04075.9 gi|116753542|ref|YP_842660.1| - 2.5e-09 37.1 0.0 3.4e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF385) Pyridox_ox_2 PF12900.2 gi|116753542|ref|YP_842660.1| - 0.021 14.6 0.0 0.046 13.5 0.0 1.7 2 0 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase T2SE PF00437.15 gi|116753543|ref|YP_842661.1| - 5.1e-12 45.2 0.0 8.4e-12 44.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|116753543|ref|YP_842661.1| - 2.5e-11 43.0 1.2 6.9e-11 41.6 0.8 1.8 1 0 0 1 1 1 1 KH domain PIN PF01850.16 gi|116753543|ref|YP_842661.1| - 3.3e-09 37.1 0.2 1e-08 35.5 0.0 2.0 2 0 0 2 2 1 1 PIN domain KH_2 PF07650.12 gi|116753543|ref|YP_842661.1| - 2.5e-06 26.9 0.3 1.7e-05 24.2 0.2 2.5 1 0 0 1 1 1 1 KH domain AAA_17 PF13207.1 gi|116753543|ref|YP_842661.1| - 2.6e-06 28.2 0.1 2.6e-05 25.0 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|116753543|ref|YP_842661.1| - 1.7e-05 24.4 0.0 4.9e-05 22.9 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain KH_3 PF13014.1 gi|116753543|ref|YP_842661.1| - 0.00015 21.3 0.9 0.00047 19.7 0.6 1.9 1 0 0 1 1 1 1 KH domain AAA_18 PF13238.1 gi|116753543|ref|YP_842661.1| - 0.00056 20.2 0.0 0.0014 18.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain PIN_4 PF13638.1 gi|116753543|ref|YP_842661.1| - 0.00059 19.9 0.0 0.0016 18.5 0.0 1.8 2 0 0 2 2 1 1 PIN domain AAA_29 PF13555.1 gi|116753543|ref|YP_842661.1| - 0.0011 18.4 0.0 0.0026 17.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|116753543|ref|YP_842661.1| - 0.0023 17.6 0.0 0.0045 16.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|116753543|ref|YP_842661.1| - 0.0024 17.7 0.0 0.0048 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|116753543|ref|YP_842661.1| - 0.0026 16.8 0.0 0.0067 15.5 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|116753543|ref|YP_842661.1| - 0.0036 17.3 0.0 0.0085 16.0 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|116753543|ref|YP_842661.1| - 0.0047 16.4 0.0 0.0079 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|116753543|ref|YP_842661.1| - 0.005 16.7 0.0 0.017 15.0 0.0 1.9 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|116753543|ref|YP_842661.1| - 0.0073 15.7 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|116753543|ref|YP_842661.1| - 0.0077 16.4 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|116753543|ref|YP_842661.1| - 0.0078 15.9 0.0 0.039 13.6 0.0 2.2 2 0 0 2 2 1 1 NTPase AAA_25 PF13481.1 gi|116753543|ref|YP_842661.1| - 0.0078 15.6 0.0 0.024 14.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|116753543|ref|YP_842661.1| - 0.0088 14.8 1.6 0.011 14.5 0.1 1.9 2 0 0 2 2 2 1 TIP49 C-terminus Mg_chelatase PF01078.16 gi|116753543|ref|YP_842661.1| - 0.01 15.0 0.0 0.026 13.7 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.9 gi|116753543|ref|YP_842661.1| - 0.02 14.6 0.0 0.053 13.2 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|116753543|ref|YP_842661.1| - 0.02 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.1 gi|116753543|ref|YP_842661.1| - 0.023 14.8 0.0 0.073 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|116753543|ref|YP_842661.1| - 0.034 13.3 0.0 0.064 12.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ABC_tran PF00005.22 gi|116753543|ref|YP_842661.1| - 0.037 14.3 0.0 0.1 12.8 0.0 1.8 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.17 gi|116753543|ref|YP_842661.1| - 0.043 13.9 0.0 0.12 12.6 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_30 PF13604.1 gi|116753543|ref|YP_842661.1| - 0.051 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|116753543|ref|YP_842661.1| - 0.059 12.2 0.0 0.25 10.1 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain AAA_28 PF13521.1 gi|116753543|ref|YP_842661.1| - 0.082 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|116753543|ref|YP_842661.1| - 0.14 11.7 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ResIII PF04851.10 gi|116753543|ref|YP_842661.1| - 0.21 11.4 0.0 0.38 10.5 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF258 PF03193.11 gi|116753543|ref|YP_842661.1| - 0.21 10.7 0.0 0.37 9.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Lactamase_B_3 PF13483.1 gi|116753545|ref|YP_842663.1| - 3.9e-49 166.4 0.1 5.8e-49 165.9 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|116753545|ref|YP_842663.1| - 1.7e-09 37.5 2.3 0.00071 19.1 0.0 2.2 1 1 1 2 2 2 2 Beta-lactamase superfamily domain GMP_synt_C PF00958.17 gi|116753546|ref|YP_842664.1| - 3.9e-32 109.8 0.0 8.7e-32 108.7 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|116753546|ref|YP_842664.1| - 8.4e-11 41.2 0.0 1.1e-05 24.4 0.0 2.1 2 0 0 2 2 2 2 NAD synthase ThiI PF02568.9 gi|116753546|ref|YP_842664.1| - 4.7e-05 22.9 0.2 0.00099 18.6 0.0 2.8 1 1 1 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|116753546|ref|YP_842664.1| - 0.0001 21.0 0.1 0.0035 15.9 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|116753546|ref|YP_842664.1| - 0.00013 21.3 0.0 0.001 18.4 0.0 2.0 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|116753546|ref|YP_842664.1| - 0.00019 21.0 0.0 0.00033 20.2 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase Arginosuc_synth PF00764.14 gi|116753546|ref|YP_842664.1| - 0.014 14.5 0.0 0.057 12.4 0.0 1.8 2 0 0 2 2 2 0 Arginosuccinate synthase ATP_bind_3 PF01171.15 gi|116753546|ref|YP_842664.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.5 1 1 0 1 1 1 0 PP-loop family MS_channel PF00924.13 gi|116753547|ref|YP_842665.1| - 5e-37 127.2 1.4 6.6e-37 126.8 1.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel ERCC4 PF02732.10 gi|116753548|ref|YP_842666.1| - 3.3e-26 91.7 0.0 7.6e-26 90.5 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain DEAD PF00270.24 gi|116753548|ref|YP_842666.1| - 8e-21 74.2 0.0 2.2e-20 72.8 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|116753548|ref|YP_842666.1| - 1.6e-20 72.7 0.0 2.7e-19 68.7 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|116753548|ref|YP_842666.1| - 1.1e-15 57.9 0.0 2.4e-15 56.8 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|116753548|ref|YP_842666.1| - 2.9e-11 43.0 0.0 9.5e-11 41.4 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|116753548|ref|YP_842666.1| - 4.1e-10 39.6 0.0 7.5e-09 35.6 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|116753548|ref|YP_842666.1| - 2.4e-08 33.1 0.4 0.001 18.6 0.0 3.5 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|116753548|ref|YP_842666.1| - 0.0022 18.1 0.1 0.61 10.3 0.0 3.7 3 0 0 3 3 3 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.15 gi|116753548|ref|YP_842666.1| - 0.0026 17.9 0.0 0.024 14.8 0.0 2.5 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.2 gi|116753548|ref|YP_842666.1| - 0.018 14.9 0.0 4.3 7.3 0.0 3.1 2 1 0 2 2 2 0 Helix-hairpin-helix motif SecA_DEAD PF07517.9 gi|116753548|ref|YP_842666.1| - 0.027 13.7 0.0 0.052 12.8 0.0 1.4 1 0 0 1 1 1 0 SecA DEAD-like domain FtsK_SpoIIIE PF01580.13 gi|116753548|ref|YP_842666.1| - 0.042 13.3 0.1 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|116753548|ref|YP_842666.1| - 0.075 13.1 0.2 4.1 7.5 0.0 3.6 3 1 1 4 4 4 0 AAA domain SNF2_N PF00176.18 gi|116753548|ref|YP_842666.1| - 0.078 11.7 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_10 PF12846.2 gi|116753548|ref|YP_842666.1| - 0.29 10.5 1.9 36 3.6 0.0 3.5 3 1 0 3 3 3 0 AAA-like domain GATase_7 PF13537.1 gi|116753550|ref|YP_842668.1| - 3.7e-24 84.8 0.0 5.4e-24 84.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|116753550|ref|YP_842668.1| - 4.5e-24 84.9 0.0 8e-24 84.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|116753550|ref|YP_842668.1| - 1.6e-20 73.1 0.0 7.1e-15 54.5 0.0 2.9 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|116753550|ref|YP_842668.1| - 2.9e-12 46.3 0.3 8e-12 44.9 0.2 1.7 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|116753550|ref|YP_842668.1| - 1.2e-07 30.6 0.0 1.5e-06 27.1 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.14 gi|116753551|ref|YP_842669.1| - 3.7e-25 87.4 13.2 4e-25 87.3 9.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-HIT PF04438.11 gi|116753551|ref|YP_842669.1| - 0.019 14.5 5.5 1 9.0 0.5 2.2 2 0 0 2 2 2 0 HIT zinc finger DZR PF12773.2 gi|116753551|ref|YP_842669.1| - 0.098 12.4 4.1 0.13 12.0 2.9 1.2 1 0 0 1 1 1 0 Double zinc ribbon FYVE_2 PF02318.11 gi|116753551|ref|YP_842669.1| - 0.16 11.8 2.6 0.18 11.6 1.8 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger zf-ribbon_3 PF13248.1 gi|116753551|ref|YP_842669.1| - 0.19 10.9 3.2 0.79 9.0 2.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain YhfH PF14149.1 gi|116753551|ref|YP_842669.1| - 0.24 11.2 1.9 0.89 9.3 0.0 2.2 2 0 0 2 2 2 0 YhfH-like protein GCC2_GCC3 PF07699.8 gi|116753551|ref|YP_842669.1| - 0.26 10.9 3.4 0.44 10.1 2.4 1.4 1 1 0 1 1 1 0 GCC2 and GCC3 zf-C2H2_3 PF13878.1 gi|116753551|ref|YP_842669.1| - 3.6 7.2 7.1 2.9 7.5 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO LSM PF01423.17 gi|116753552|ref|YP_842670.1| - 1.2e-22 79.1 0.1 1.4e-22 79.0 0.0 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|116753552|ref|YP_842670.1| - 0.02 14.7 0.0 0.026 14.4 0.0 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain PUA PF01472.15 gi|116753553|ref|YP_842671.1| - 6.6e-17 61.0 1.1 6.6e-17 61.0 0.8 1.6 2 0 0 2 2 2 1 PUA domain WW PF00397.21 gi|116753554|ref|YP_842672.1| - 0.044 13.6 1.0 1.9 8.4 0.1 2.3 1 1 1 2 2 2 0 WW domain NifW PF03206.9 gi|116753554|ref|YP_842672.1| - 0.084 12.9 0.1 0.11 12.5 0.1 1.1 1 0 0 1 1 1 0 Nitrogen fixation protein NifW DHH PF01368.15 gi|116753556|ref|YP_842674.1| - 1.8e-38 131.4 1.5 2.7e-38 130.8 1.0 1.3 1 0 0 1 1 1 1 DHH family DHHA2 PF02833.9 gi|116753556|ref|YP_842674.1| - 1.2e-37 128.9 1.7 2.4e-37 127.9 1.2 1.5 1 0 0 1 1 1 1 DHHA2 domain DNA_photolyase PF00875.13 gi|116753557|ref|YP_842675.1| - 1.4e-12 47.6 0.0 1.6e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 DNA photolyase Tubulin PF00091.20 gi|116753558|ref|YP_842676.1| - 1.8e-33 116.1 0.1 1.3e-32 113.3 0.0 2.0 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|116753558|ref|YP_842676.1| - 0.012 14.6 0.0 0.032 13.1 0.0 1.7 1 1 0 1 1 1 0 Tubulin like DUF4041 PF13250.1 gi|116753558|ref|YP_842676.1| - 0.13 11.8 0.2 15 5.2 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4041) DUF11 PF01345.13 gi|116753559|ref|YP_842677.1| - 1.1e-16 60.6 7.6 1e-12 47.8 0.1 2.7 3 0 0 3 3 3 2 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|116753559|ref|YP_842677.1| - 5.6e-13 48.4 0.3 9.9e-10 37.8 0.1 2.4 1 1 1 2 2 2 2 Translocon-associated protein beta (TRAPB) CARDB PF07705.6 gi|116753559|ref|YP_842677.1| - 3.4e-12 46.2 0.2 4.3e-06 26.7 0.0 2.4 2 0 0 2 2 2 2 CARDB NPCBM_assoc PF10633.4 gi|116753559|ref|YP_842677.1| - 1.2e-06 28.4 0.2 0.038 14.0 0.1 3.2 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase BatD PF13584.1 gi|116753559|ref|YP_842677.1| - 0.00066 18.3 1.1 0.00066 18.3 0.7 1.9 2 0 0 2 2 2 1 Oxygen tolerance DUF3426 PF11906.3 gi|116753559|ref|YP_842677.1| - 0.0073 15.9 1.1 0.24 11.0 0.1 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3426) Arrestin_C PF02752.17 gi|116753559|ref|YP_842677.1| - 0.027 14.6 0.4 8.2 6.5 0.1 2.8 2 1 0 2 2 2 0 Arrestin (or S-antigen), C-terminal domain Cohesin PF00963.13 gi|116753559|ref|YP_842677.1| - 0.056 13.3 0.5 0.056 13.3 0.3 2.1 2 0 0 2 2 2 0 Cohesin domain QRPTase_C PF01729.14 gi|116753560|ref|YP_842678.1| - 2.8e-59 199.4 0.3 3.6e-59 199.0 0.2 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|116753560|ref|YP_842678.1| - 1.9e-24 85.2 0.0 3.5e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain TMP-TENI PF02581.12 gi|116753560|ref|YP_842678.1| - 0.00012 21.2 0.3 0.00022 20.3 0.2 1.4 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI Ribul_P_3_epim PF00834.14 gi|116753560|ref|YP_842678.1| - 0.0046 16.0 0.3 0.43 9.6 0.0 2.2 1 1 1 2 2 2 2 Ribulose-phosphate 3 epimerase family Fis1_TPR_N PF14852.1 gi|116753560|ref|YP_842678.1| - 0.025 13.8 0.0 0.061 12.6 0.0 1.6 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat DUF1341 PF07071.6 gi|116753560|ref|YP_842678.1| - 0.044 13.3 0.2 0.077 12.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1341) DUF108 PF01958.13 gi|116753561|ref|YP_842679.1| - 1.4e-31 108.5 0.4 2.8e-31 107.5 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|116753561|ref|YP_842679.1| - 3.6e-25 88.6 0.4 2.9e-24 85.6 0.1 2.0 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|116753561|ref|YP_842679.1| - 1.2e-07 31.6 0.0 2.6e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|116753561|ref|YP_842679.1| - 8.7e-06 26.2 0.1 1.4e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|116753561|ref|YP_842679.1| - 2.7e-05 24.4 0.9 5.8e-05 23.4 0.6 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|116753561|ref|YP_842679.1| - 0.00023 21.4 0.1 0.00034 20.9 0.1 1.4 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|116753561|ref|YP_842679.1| - 0.0003 19.9 0.0 0.00048 19.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|116753561|ref|YP_842679.1| - 0.007 16.8 0.3 0.013 15.9 0.2 1.5 1 0 0 1 1 1 1 CoA binding domain NAD_binding_2 PF03446.10 gi|116753561|ref|YP_842679.1| - 0.0096 15.7 0.1 0.016 15.0 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|116753561|ref|YP_842679.1| - 0.022 13.7 0.1 0.03 13.2 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase ThiF PF00899.16 gi|116753561|ref|YP_842679.1| - 0.47 10.2 3.3 5.4 6.8 2.3 2.1 1 1 0 1 1 1 0 ThiF family DUF1890 PF09001.6 gi|116753562|ref|YP_842680.1| - 1.7e-53 180.3 0.0 1.9e-53 180.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) DUF1894 PF08979.6 gi|116753563|ref|YP_842681.1| - 5.9e-35 119.1 0.0 6.8e-35 118.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) Flavoprotein PF02441.14 gi|116753564|ref|YP_842682.1| - 1.3e-17 63.6 0.0 1.7e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein S-layer PF07752.6 gi|116753565|ref|YP_842683.1| - 2.7e-05 23.4 0.0 3.5e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 S-layer protein Peptidase_M22 PF00814.20 gi|116753566|ref|YP_842684.1| - 4.4e-86 288.6 0.0 5.4e-86 288.3 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family GARS_A PF01071.14 gi|116753567|ref|YP_842685.1| - 1.2e-58 197.9 0.0 1.8e-58 197.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|116753567|ref|YP_842685.1| - 3.9e-31 107.4 0.0 6e-31 106.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|116753567|ref|YP_842685.1| - 7.1e-25 87.0 0.0 1.9e-24 85.6 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|116753567|ref|YP_842685.1| - 4.5e-08 33.0 0.0 7.8e-07 28.9 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|116753567|ref|YP_842685.1| - 8.4e-08 31.3 0.0 4.7e-06 25.5 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|116753567|ref|YP_842685.1| - 0.013 14.8 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|116753567|ref|YP_842685.1| - 0.026 14.3 0.0 8.6 6.2 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|116753567|ref|YP_842685.1| - 0.053 12.8 0.0 0.13 11.5 0.0 1.6 2 0 0 2 2 2 0 ATP-grasp domain Gln-synt_C PF00120.19 gi|116753568|ref|YP_842686.1| - 8e-96 320.1 0.0 1e-95 319.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|116753568|ref|YP_842686.1| - 3.7e-32 109.7 0.0 5.9e-32 109.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain LMWPc PF01451.16 gi|116753569|ref|YP_842687.1| - 7.5e-32 110.5 0.0 8.5e-32 110.3 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase HHH_3 PF12836.2 gi|116753570|ref|YP_842688.1| - 1.5e-08 34.4 0.0 2e-07 30.8 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif Radical_SAM PF04055.16 gi|116753570|ref|YP_842688.1| - 1.6e-07 31.6 0.1 7.6e-07 29.4 0.0 2.2 2 2 0 2 2 2 1 Radical SAM superfamily HHH PF00633.18 gi|116753570|ref|YP_842688.1| - 4.5e-05 22.9 0.0 0.0001 21.8 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Fer4_12 PF13353.1 gi|116753570|ref|YP_842688.1| - 0.00012 22.1 0.0 0.00027 21.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain HHH_5 PF14520.1 gi|116753570|ref|YP_842688.1| - 0.00057 20.0 0.0 0.0016 18.5 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|116753570|ref|YP_842688.1| - 0.014 15.2 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif MCH PF02289.11 gi|116753571|ref|YP_842689.1| - 9.9e-127 422.2 0.5 1.1e-126 422.1 0.3 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Scm3 PF10384.4 gi|116753571|ref|YP_842689.1| - 0.84 9.1 2.4 0.79 9.2 0.3 1.8 2 0 0 2 2 2 0 Centromere protein Scm3 AIM24 PF01987.12 gi|116753572|ref|YP_842690.1| - 3.8e-64 216.0 0.1 4.3e-64 215.8 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 GDE_C PF06202.9 gi|116753573|ref|YP_842691.1| - 1.8e-115 385.6 0.0 2.7e-115 385.0 0.0 1.3 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|116753573|ref|YP_842691.1| - 9.2e-63 211.4 0.0 1.6e-62 210.7 0.0 1.4 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Glyco_hydro_100 PF12899.2 gi|116753573|ref|YP_842691.1| - 0.00026 19.5 0.0 0.25 9.6 0.0 2.1 2 0 0 2 2 2 2 Alkaline and neutral invertase DUF608 PF04685.8 gi|116753573|ref|YP_842691.1| - 0.0012 17.6 0.0 0.0018 17.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Glyco_hydro_63 PF03200.11 gi|116753573|ref|YP_842691.1| - 0.069 10.9 0.0 0.12 10.2 0.0 1.2 1 0 0 1 1 1 0 Mannosyl oligosaccharide glucosidase Glyco_hydro_57 PF03065.10 gi|116753574|ref|YP_842692.1| - 4.4e-65 219.9 0.0 1.9e-64 217.8 0.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|116753574|ref|YP_842692.1| - 0.00014 21.4 0.0 0.00028 20.4 0.0 1.6 1 0 0 1 1 1 1 Polysaccharide deacetylase Herpes_UL46 PF03387.9 gi|116753574|ref|YP_842692.1| - 0.019 13.1 0.2 0.97 7.5 0.1 2.2 2 0 0 2 2 2 0 Herpesvirus UL46 protein UbiA PF01040.13 gi|116753575|ref|YP_842693.1| - 1.9e-21 76.4 24.4 2.6e-21 76.0 16.9 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF3796 PF12676.2 gi|116753575|ref|YP_842693.1| - 0.076 13.2 5.8 6.3 7.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3796) dCMP_cyt_deam_1 PF00383.17 gi|116753576|ref|YP_842694.1| - 9.3e-30 102.3 1.5 1.1e-29 102.0 1.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|116753576|ref|YP_842694.1| - 9.1e-05 22.1 0.3 0.00012 21.7 0.2 1.3 1 0 0 1 1 1 1 APOBEC-like N-terminal domain Bd3614-deam PF14439.1 gi|116753576|ref|YP_842694.1| - 0.00012 21.9 0.4 0.00026 20.8 0.3 1.6 1 1 0 1 1 1 1 Bd3614-like deaminase XOO_2897-deam PF14440.1 gi|116753576|ref|YP_842694.1| - 0.00017 21.2 0.1 0.00019 21.1 0.1 1.2 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase MafB19-deam PF14437.1 gi|116753576|ref|YP_842694.1| - 0.038 13.6 2.8 0.052 13.1 1.9 1.2 1 0 0 1 1 1 0 MafB19-like deaminase zf-C3HC4 PF00097.20 gi|116753576|ref|YP_842694.1| - 0.045 13.4 1.2 0.045 13.4 0.8 2.0 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) NTP_transferase PF00483.18 gi|116753577|ref|YP_842695.1| - 1.1e-34 119.9 0.0 2.4e-34 118.7 0.0 1.6 2 0 0 2 2 2 1 Nucleotidyl transferase Hexapep PF00132.19 gi|116753577|ref|YP_842695.1| - 5.4e-11 41.4 5.9 0.049 13.1 0.1 4.4 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|116753577|ref|YP_842695.1| - 0.006 16.1 1.2 0.27 10.8 0.0 3.1 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|116753577|ref|YP_842695.1| - 0.0077 16.3 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain MCM PF00493.18 gi|116753578|ref|YP_842696.1| - 2.6e-134 447.2 0.0 3.2e-134 446.8 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|116753578|ref|YP_842696.1| - 7.7e-19 68.3 0.1 1.4e-17 64.2 0.0 3.0 3 1 1 4 4 4 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|116753578|ref|YP_842696.1| - 1.1e-08 34.4 0.1 3e-06 26.5 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|116753578|ref|YP_842696.1| - 1.1e-07 31.7 0.0 2.4e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|116753578|ref|YP_842696.1| - 1.1e-05 25.0 0.0 3.6e-05 23.3 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|116753578|ref|YP_842696.1| - 0.00064 19.2 0.0 0.006 16.0 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Zn-ribbon_8 PF09723.5 gi|116753578|ref|YP_842696.1| - 0.013 15.4 3.0 0.025 14.5 2.0 1.4 1 0 0 1 1 1 0 Zinc ribbon domain AAA_22 PF13401.1 gi|116753578|ref|YP_842696.1| - 0.074 13.1 0.1 0.59 10.2 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|116753578|ref|YP_842696.1| - 0.075 13.2 0.0 0.3 11.3 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AMP-binding_C_2 PF14535.1 gi|116753579|ref|YP_842697.1| - 5.1e-35 119.4 0.1 1.1e-34 118.3 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|116753579|ref|YP_842697.1| - 1.7e-20 72.8 1.2 5.7e-20 71.1 0.9 1.7 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|116753579|ref|YP_842697.1| - 2.6e-06 26.4 0.0 0.017 13.7 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|116753579|ref|YP_842697.1| - 0.0034 15.9 0.0 0.38 9.2 0.0 2.1 2 0 0 2 2 2 2 GH3 auxin-responsive promoter Abhydrolase_6 PF12697.2 gi|116753579|ref|YP_842697.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase family ACT PF01842.20 gi|116753580|ref|YP_842698.1| - 2.1e-20 71.7 0.2 2.5e-09 36.4 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|116753580|ref|YP_842698.1| - 5e-08 33.1 0.3 0.0023 18.2 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|116753580|ref|YP_842698.1| - 1.1e-07 31.2 0.1 0.004 16.6 0.0 2.7 2 1 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|116753580|ref|YP_842698.1| - 0.029 14.0 0.0 0.22 11.2 0.0 2.2 2 0 0 2 2 2 0 ACT domain Glyoxalase_2 PF12681.2 gi|116753580|ref|YP_842698.1| - 0.035 14.7 0.0 0.075 13.6 0.0 1.7 1 1 0 1 1 1 0 Glyoxalase-like domain Glyoxalase PF00903.20 gi|116753580|ref|YP_842698.1| - 0.1 12.6 0.0 0.43 10.5 0.0 2.0 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APOBEC_C PF05240.9 gi|116753580|ref|YP_842698.1| - 0.13 11.7 0.0 3.1 7.2 0.0 2.8 3 0 0 3 3 3 0 APOBEC-like C-terminal domain Rep_fac_C PF08542.6 gi|116753581|ref|YP_842699.1| - 8.2e-21 73.7 0.0 1.9e-20 72.6 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|116753581|ref|YP_842699.1| - 2e-16 60.4 0.0 3.7e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|116753581|ref|YP_842699.1| - 3.2e-14 52.9 0.0 6.9e-12 45.3 0.0 2.5 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|116753581|ref|YP_842699.1| - 5.3e-06 25.6 0.3 0.0013 17.7 0.0 3.1 1 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|116753581|ref|YP_842699.1| - 1.1e-05 25.5 0.0 0.18 11.9 0.0 2.6 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|116753581|ref|YP_842699.1| - 1.8e-05 24.6 0.0 2.8e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|116753581|ref|YP_842699.1| - 3.3e-05 23.9 0.2 0.013 15.4 0.0 2.9 1 1 2 3 3 3 1 AAA ATPase domain TIP49 PF06068.8 gi|116753581|ref|YP_842699.1| - 0.00015 20.6 0.1 0.013 14.2 0.0 2.8 1 1 1 2 2 2 1 TIP49 C-terminus AAA_10 PF12846.2 gi|116753581|ref|YP_842699.1| - 0.00056 19.4 0.1 0.076 12.4 0.0 2.4 1 1 1 2 2 2 1 AAA-like domain IstB_IS21 PF01695.12 gi|116753581|ref|YP_842699.1| - 0.00059 19.3 0.0 0.0021 17.4 0.0 2.0 3 0 0 3 3 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|116753581|ref|YP_842699.1| - 0.00066 18.8 0.0 0.23 10.6 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Rad17 PF03215.10 gi|116753581|ref|YP_842699.1| - 0.00069 18.4 0.0 0.13 10.8 0.0 2.1 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_3 PF07726.6 gi|116753581|ref|YP_842699.1| - 0.00087 18.9 0.0 0.0018 17.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.8 gi|116753581|ref|YP_842699.1| - 0.0012 18.3 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_19 PF13245.1 gi|116753581|ref|YP_842699.1| - 0.005 16.5 0.0 0.015 15.0 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|116753581|ref|YP_842699.1| - 0.0094 15.9 0.0 0.02 14.9 0.0 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain SNF2_N PF00176.18 gi|116753581|ref|YP_842699.1| - 0.011 14.5 0.0 0.49 9.1 0.0 2.1 1 1 1 2 2 2 0 SNF2 family N-terminal domain AAA_5 PF07728.9 gi|116753581|ref|YP_842699.1| - 0.014 15.0 0.1 0.26 10.9 0.1 2.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|116753581|ref|YP_842699.1| - 0.016 14.7 0.0 3.7 6.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DEAD PF00270.24 gi|116753581|ref|YP_842699.1| - 0.024 14.1 0.0 8.9 5.7 0.0 2.6 2 1 1 3 3 3 0 DEAD/DEAH box helicase ResIII PF04851.10 gi|116753581|ref|YP_842699.1| - 0.033 14.0 0.0 0.13 12.1 0.0 1.9 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_17 PF13207.1 gi|116753581|ref|YP_842699.1| - 0.039 14.7 0.3 0.38 11.5 0.0 2.3 1 1 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|116753581|ref|YP_842699.1| - 0.044 14.0 0.0 0.16 12.2 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|116753581|ref|YP_842699.1| - 0.07 12.5 0.2 0.29 10.5 0.0 2.2 2 2 1 3 3 3 0 AAA domain AAA_11 PF13086.1 gi|116753581|ref|YP_842699.1| - 0.071 12.6 0.0 0.15 11.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|116753581|ref|YP_842699.1| - 0.1 12.8 0.0 0.25 11.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Torsin PF06309.6 gi|116753581|ref|YP_842699.1| - 0.12 12.2 0.0 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 Torsin Grp1_Fun34_YaaH PF01184.14 gi|116753582|ref|YP_842700.1| - 5.8e-60 202.1 19.1 6.8e-60 201.9 13.3 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family DUF983 PF06170.7 gi|116753582|ref|YP_842700.1| - 0.056 13.5 1.6 0.056 13.5 1.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF983) Metallophos_2 PF12850.2 gi|116753583|ref|YP_842701.1| - 5.5e-10 39.2 0.0 1.3e-09 38.1 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|116753583|ref|YP_842701.1| - 0.095 12.0 1.1 0.33 10.3 0.1 2.2 2 1 0 2 2 2 0 Calcineurin-like phosphoesterase OspD PF03207.8 gi|116753583|ref|YP_842701.1| - 0.17 10.9 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Borrelia outer surface protein D (OspD) TFIIB PF00382.14 gi|116753584|ref|YP_842702.1| - 4e-47 157.8 4.2 8e-25 86.4 1.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|116753584|ref|YP_842702.1| - 1.3e-19 69.2 1.8 2.3e-19 68.4 0.8 1.8 2 0 0 2 2 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|116753584|ref|YP_842702.1| - 0.00011 21.8 0.0 0.06 12.9 0.0 2.4 1 1 1 2 2 2 2 Cyclin, N-terminal domain zf-ribbon_3 PF13248.1 gi|116753584|ref|YP_842702.1| - 0.0013 17.8 0.2 0.0013 17.8 0.1 1.8 2 0 0 2 2 1 1 zinc-ribbon domain HTH_24 PF13412.1 gi|116753584|ref|YP_842702.1| - 0.0056 16.0 0.1 0.045 13.1 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|116753584|ref|YP_842702.1| - 0.0069 15.9 1.8 0.054 13.0 0.1 3.1 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|116753584|ref|YP_842702.1| - 0.0085 15.7 0.3 0.02 14.5 0.2 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Sigma70_r4 PF04545.11 gi|116753584|ref|YP_842702.1| - 0.016 14.5 8.6 0.066 12.5 0.1 3.9 4 1 0 4 4 4 0 Sigma-70, region 4 HTH_3 PF01381.17 gi|116753584|ref|YP_842702.1| - 0.034 13.9 0.1 3 7.7 0.0 3.7 3 1 1 4 4 4 0 Helix-turn-helix Lar_restr_allev PF14354.1 gi|116753584|ref|YP_842702.1| - 0.034 14.4 1.8 0.55 10.5 0.7 2.9 2 1 0 2 2 2 0 Restriction alleviation protein Lar Cyclin_C PF02984.14 gi|116753584|ref|YP_842702.1| - 0.035 14.0 0.0 4 7.3 0.0 2.6 2 0 0 2 2 2 0 Cyclin, C-terminal domain Ribosomal_S27e PF01667.12 gi|116753584|ref|YP_842702.1| - 0.049 13.1 0.1 0.14 11.7 0.1 1.7 1 0 0 1 1 1 0 Ribosomal protein S27 TrmB PF01978.14 gi|116753584|ref|YP_842702.1| - 0.061 13.0 0.3 17 5.1 0.1 2.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DZR PF12773.2 gi|116753584|ref|YP_842702.1| - 0.061 13.1 1.2 0.36 10.6 0.2 2.3 2 0 0 2 2 2 0 Double zinc ribbon Elf1 PF05129.8 gi|116753584|ref|YP_842702.1| - 0.07 12.8 2.2 0.12 12.1 0.5 2.0 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Prim_Zn_Ribbon PF08273.7 gi|116753584|ref|YP_842702.1| - 0.072 13.1 2.0 0.11 12.5 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase RPA_interact_C PF14768.1 gi|116753584|ref|YP_842702.1| - 0.09 13.1 0.2 7.1 7.1 0.0 2.5 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HypA PF01155.14 gi|116753584|ref|YP_842702.1| - 0.11 12.1 1.0 1.8 8.2 0.4 2.6 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|116753584|ref|YP_842702.1| - 0.21 11.1 0.8 0.97 8.9 0.6 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain HTH_31 PF13560.1 gi|116753584|ref|YP_842702.1| - 0.25 11.5 6.4 2.3 8.5 0.0 4.0 4 1 0 4 4 4 0 Helix-turn-helix domain Ogr_Delta PF04606.7 gi|116753584|ref|YP_842702.1| - 0.31 10.7 1.9 0.44 10.2 0.1 2.3 2 0 0 2 2 1 0 Ogr/Delta-like zinc finger HTH_23 PF13384.1 gi|116753584|ref|YP_842702.1| - 0.49 10.1 0.1 0.49 10.1 0.1 3.9 4 1 0 4 4 4 0 Homeodomain-like domain Zn_Tnp_IS1595 PF12760.2 gi|116753584|ref|YP_842702.1| - 0.77 9.6 3.6 0.27 11.0 0.2 2.0 2 0 0 2 2 1 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.1 gi|116753584|ref|YP_842702.1| - 1.3 8.8 4.6 14 5.5 0.8 3.5 4 1 1 5 5 4 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.5 gi|116753584|ref|YP_842702.1| - 1.7 8.6 5.9 1.6 8.7 0.2 2.8 2 1 1 3 3 3 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|116753584|ref|YP_842702.1| - 1.9 8.0 5.6 2.7 7.5 0.1 2.9 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Gar1 PF04410.9 gi|116753585|ref|YP_842703.1| - 1.7e-14 53.5 0.0 1.8e-14 53.4 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.11 gi|116753585|ref|YP_842703.1| - 0.06 13.2 0.1 0.099 12.5 0.1 1.5 1 0 0 1 1 1 0 PRC-barrel domain NOG1 PF06858.9 gi|116753586|ref|YP_842704.1| - 1.8e-20 72.5 0.0 2.7e-20 71.9 0.0 1.3 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|116753586|ref|YP_842704.1| - 1.3e-17 63.7 0.0 2.1e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|116753586|ref|YP_842704.1| - 3.6e-10 39.3 0.0 5.5e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|116753586|ref|YP_842704.1| - 5.4e-06 26.9 0.0 8.4e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|116753586|ref|YP_842704.1| - 0.018 14.5 0.0 0.16 11.4 0.0 2.1 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein SRPRB PF09439.5 gi|116753586|ref|YP_842704.1| - 0.021 14.0 0.0 0.053 12.7 0.0 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF1699 PF08004.6 gi|116753587|ref|YP_842705.1| - 3.7e-58 194.7 0.0 4.1e-58 194.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF433 PF04255.9 gi|116753587|ref|YP_842705.1| - 0.13 11.6 0.0 1 8.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF433) Pentapeptide_3 PF13576.1 gi|116753588|ref|YP_842706.1| - 2.6e-19 68.8 51.3 1.6e-07 31.0 5.4 6.6 3 2 3 6 6 6 6 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|116753588|ref|YP_842706.1| - 1.4 8.8 14.3 0.15 11.8 1.0 4.0 2 2 1 3 3 3 0 Pentapeptide repeats (9 copies) DUF4149 PF13664.1 gi|116753589|ref|YP_842707.1| - 0.58 10.2 7.1 3.5 7.7 4.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) PRA1 PF03208.14 gi|116753589|ref|YP_842707.1| - 3 7.1 6.9 4.7 6.5 2.3 2.4 2 1 0 2 2 2 0 PRA1 family protein CTP_transf_1 PF01148.15 gi|116753589|ref|YP_842707.1| - 4.9 6.7 14.5 2.8e+02 0.9 10.1 2.8 1 1 0 1 1 1 0 Cytidylyltransferase family tRNA-synt_2b PF00587.20 gi|116753590|ref|YP_842708.1| - 1.7e-56 190.5 0.3 3.2e-56 189.6 0.2 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|116753590|ref|YP_842708.1| - 6.5e-23 80.4 1.4 3.2e-22 78.2 0.0 2.7 3 0 0 3 3 3 1 Anticodon binding domain Zn-ribbon_8 PF09723.5 gi|116753590|ref|YP_842708.1| - 0.003 17.4 0.1 0.71 9.8 0.0 2.7 2 0 0 2 2 2 1 Zinc ribbon domain DUF2067 PF09840.4 gi|116753590|ref|YP_842708.1| - 0.021 14.3 0.1 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) HisKA PF00512.20 gi|116753590|ref|YP_842708.1| - 0.098 12.6 0.4 0.28 11.2 0.3 1.7 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain zf-C2H2 PF00096.21 gi|116753590|ref|YP_842708.1| - 0.49 10.8 1.5 7.3 7.1 0.0 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type TrmB PF01978.14 gi|116753591|ref|YP_842709.1| - 0.021 14.4 0.0 0.049 13.3 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|116753591|ref|YP_842709.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain IgaA PF07095.6 gi|116753592|ref|YP_842710.1| - 0.15 9.7 0.1 0.16 9.6 0.1 1.0 1 0 0 1 1 1 0 Intracellular growth attenuator protein IgaA FixQ PF05545.6 gi|116753592|ref|YP_842710.1| - 0.32 10.6 0.0 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ SRP19 PF01922.12 gi|116753593|ref|YP_842711.1| - 6.7e-27 93.9 0.1 8.1e-27 93.6 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein DUF211 PF02680.9 gi|116753594|ref|YP_842712.1| - 3.5e-39 132.4 2.0 4.1e-39 132.2 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 DUF86 PF01934.12 gi|116753594|ref|YP_842712.1| - 0.049 13.2 0.0 0.065 12.8 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function DUF86 YfmQ PF10787.4 gi|116753594|ref|YP_842712.1| - 0.06 12.7 0.0 0.073 12.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein from bacillus cereus group NAD_binding_5 PF07994.7 gi|116753595|ref|YP_842713.1| - 9.5e-56 189.4 0.0 3e-55 187.8 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|116753595|ref|YP_842713.1| - 5.2e-34 116.4 0.0 8.8e-34 115.7 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase DUF45 PF01863.12 gi|116753597|ref|YP_842715.1| - 1.4e-28 100.0 0.1 1.1e-25 90.7 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function DUF45 WLM PF08325.5 gi|116753597|ref|YP_842715.1| - 9.1e-06 25.6 0.0 8.7e-05 22.4 0.0 2.2 2 0 0 2 2 2 1 WLM domain SprT-like PF10263.4 gi|116753597|ref|YP_842715.1| - 0.00018 21.1 0.0 0.0007 19.2 0.0 1.9 2 0 0 2 2 2 1 SprT-like family MTS PF05175.9 gi|116753598|ref|YP_842716.1| - 6.5e-14 51.6 0.0 1.1e-13 50.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|116753598|ref|YP_842716.1| - 8.4e-12 45.1 0.0 1.6e-11 44.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116753598|ref|YP_842716.1| - 1.7e-07 30.9 0.0 2.3e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|116753598|ref|YP_842716.1| - 3.5e-06 26.3 0.3 5.1e-06 25.8 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.1 gi|116753598|ref|YP_842716.1| - 6e-05 22.8 0.0 0.0014 18.4 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116753598|ref|YP_842716.1| - 0.00021 21.8 0.0 0.00054 20.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|116753598|ref|YP_842716.1| - 0.0019 18.6 0.1 0.013 15.9 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain UPF0146 PF03686.8 gi|116753598|ref|YP_842716.1| - 0.0037 17.0 0.0 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_25 PF13649.1 gi|116753598|ref|YP_842716.1| - 0.004 17.5 0.0 0.012 15.9 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|116753598|ref|YP_842716.1| - 0.009 15.0 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.6 gi|116753598|ref|YP_842716.1| - 0.011 14.4 0.0 0.016 13.9 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_11 PF08241.7 gi|116753598|ref|YP_842716.1| - 0.018 15.5 0.0 0.12 12.9 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain NodS PF05401.6 gi|116753598|ref|YP_842716.1| - 0.15 11.4 0.1 0.33 10.3 0.0 1.6 2 0 0 2 2 2 0 Nodulation protein S (NodS) Epimerase PF01370.16 gi|116753599|ref|YP_842717.1| - 3.2e-51 174.0 0.1 4e-51 173.7 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|116753599|ref|YP_842717.1| - 5.1e-21 74.8 0.0 6e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|116753599|ref|YP_842717.1| - 3.6e-18 65.2 0.0 4.3e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|116753599|ref|YP_842717.1| - 1.1e-17 63.8 0.0 9.3e-17 60.8 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|116753599|ref|YP_842717.1| - 1.3e-12 47.1 0.3 1.7e-10 40.2 0.2 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|116753599|ref|YP_842717.1| - 2.2e-10 40.8 0.0 3.7e-10 40.0 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|116753599|ref|YP_842717.1| - 2.5e-05 24.2 0.6 6.3e-05 22.9 0.0 1.9 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|116753599|ref|YP_842717.1| - 0.0001 21.6 0.0 0.0052 16.0 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family Saccharop_dh PF03435.13 gi|116753599|ref|YP_842717.1| - 0.00056 18.9 0.0 0.00081 18.4 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase DapB_N PF01113.15 gi|116753599|ref|YP_842717.1| - 0.027 14.3 0.0 0.062 13.2 0.0 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|116753599|ref|YP_842717.1| - 0.042 14.1 0.0 0.75 10.1 0.0 2.2 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|116753599|ref|YP_842717.1| - 0.12 11.9 0.1 0.35 10.5 0.1 1.9 1 1 0 1 1 1 0 KR domain Nol1_Nop2_Fmu PF01189.12 gi|116753601|ref|YP_842719.1| - 2.6e-50 171.3 0.0 3.3e-50 171.0 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_26 PF13659.1 gi|116753601|ref|YP_842719.1| - 2.5e-06 27.5 0.1 4e-06 26.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|116753601|ref|YP_842719.1| - 3e-05 24.0 0.0 6e-05 23.1 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|116753601|ref|YP_842719.1| - 7.1e-05 22.4 0.0 9.8e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|116753601|ref|YP_842719.1| - 0.0022 17.5 0.0 0.0033 17.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|116753601|ref|YP_842719.1| - 0.0025 18.3 0.0 0.0047 17.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Nol1_Nop2_Fmu_2 PF13636.1 gi|116753602|ref|YP_842720.1| - 3.3e-17 62.4 0.0 4e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis Radical_SAM PF04055.16 gi|116753603|ref|YP_842721.1| - 8.1e-13 48.8 0.1 1.7e-12 47.8 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Aconitase PF00330.15 gi|116753604|ref|YP_842722.1| - 5e-107 358.2 0.5 5.8e-75 252.5 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|116753604|ref|YP_842722.1| - 4.4e-19 68.8 0.0 8.6e-19 67.9 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.8 gi|116753604|ref|YP_842722.1| - 0.0036 15.9 0.0 0.0057 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_2_N PF06434.8 gi|116753604|ref|YP_842722.1| - 0.014 14.7 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 Aconitate hydratase 2 N-terminus 4HBT PF03061.17 gi|116753605|ref|YP_842723.1| - 1.6e-20 73.0 0.1 2e-20 72.6 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|116753605|ref|YP_842723.1| - 4.6e-13 49.2 0.0 6e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|116753605|ref|YP_842723.1| - 5.3e-11 42.7 0.1 5.9e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.1 gi|116753605|ref|YP_842723.1| - 0.056 12.5 0.0 0.059 12.5 0.0 1.1 1 0 0 1 1 1 0 Polyketide synthase dehydratase CdhD PF03599.11 gi|116753606|ref|YP_842724.1| - 4.1e-128 427.1 0.1 5e-128 426.8 0.1 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|116753606|ref|YP_842724.1| - 5.3e-17 61.0 1.0 1e-16 60.1 0.7 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster Pterin_bind PF00809.17 gi|116753606|ref|YP_842724.1| - 0.0027 17.1 0.1 0.044 13.1 0.1 2.2 1 1 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.11 gi|116753607|ref|YP_842725.1| - 8.4e-83 277.9 0.3 8.4e-78 261.5 0.0 3.2 1 1 1 2 2 2 2 CO dehydrogenase/acetyl-CoA synthase delta subunit HSP70 PF00012.15 gi|116753607|ref|YP_842725.1| - 0.032 12.1 0.0 0.058 11.3 0.0 1.3 1 0 0 1 1 1 0 Hsp70 protein Pterin_bind PF00809.17 gi|116753607|ref|YP_842725.1| - 0.054 12.8 0.1 0.28 10.5 0.1 2.0 1 1 0 1 1 1 0 Pterin binding enzyme CbiA PF01656.18 gi|116753608|ref|YP_842726.1| - 1e-34 119.6 0.2 1.2e-34 119.4 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|116753608|ref|YP_842726.1| - 3.7e-11 42.6 0.4 3.2e-09 36.2 0.0 2.6 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|116753608|ref|YP_842726.1| - 8.6e-07 29.0 0.2 6e-05 23.0 0.1 2.8 1 1 1 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|116753608|ref|YP_842726.1| - 1.3e-06 27.7 0.0 0.0033 16.6 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|116753608|ref|YP_842726.1| - 6.6e-06 25.8 0.5 0.017 14.7 0.2 2.5 2 1 0 2 2 2 2 AAA domain DUF87 PF01935.12 gi|116753608|ref|YP_842726.1| - 5.3e-05 23.1 0.0 0.00018 21.4 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|116753608|ref|YP_842726.1| - 0.0001 22.3 0.0 0.0015 18.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|116753608|ref|YP_842726.1| - 0.00028 20.5 0.2 0.00056 19.6 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain SRP54 PF00448.17 gi|116753608|ref|YP_842726.1| - 0.00036 20.0 0.3 0.039 13.4 0.1 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|116753608|ref|YP_842726.1| - 0.00059 19.9 0.1 0.0066 16.5 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|116753608|ref|YP_842726.1| - 0.00062 20.5 2.1 0.0068 17.2 1.5 2.7 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|116753608|ref|YP_842726.1| - 0.00066 19.4 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|116753608|ref|YP_842726.1| - 0.0023 17.6 0.0 0.0042 16.7 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase YhjQ PF06564.7 gi|116753608|ref|YP_842726.1| - 0.0039 16.5 0.0 0.018 14.3 0.0 1.8 2 0 0 2 2 2 1 YhjQ protein AAA_30 PF13604.1 gi|116753608|ref|YP_842726.1| - 0.0043 16.6 0.0 0.0073 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|116753608|ref|YP_842726.1| - 0.0043 17.3 0.8 0.027 14.7 0.1 2.4 1 1 1 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|116753608|ref|YP_842726.1| - 0.0045 16.7 0.4 1.5 8.4 0.1 2.3 2 0 0 2 2 2 1 NTPase AAA_10 PF12846.2 gi|116753608|ref|YP_842726.1| - 0.0046 16.4 0.1 0.0063 15.9 0.1 1.5 1 1 0 1 1 1 1 AAA-like domain DUF2075 PF09848.4 gi|116753608|ref|YP_842726.1| - 0.0053 15.7 0.0 0.0078 15.2 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ArgK PF03308.11 gi|116753608|ref|YP_842726.1| - 0.0096 14.7 0.4 0.017 13.9 0.3 1.4 1 0 0 1 1 1 1 ArgK protein AAA_24 PF13479.1 gi|116753608|ref|YP_842726.1| - 0.011 15.3 0.0 0.027 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|116753608|ref|YP_842726.1| - 0.014 14.7 0.1 0.57 9.5 0.0 2.7 2 1 1 3 3 3 0 Thymidylate kinase AAA_25 PF13481.1 gi|116753608|ref|YP_842726.1| - 0.019 14.3 0.1 0.063 12.6 0.0 1.9 3 0 0 3 3 3 0 AAA domain KaiC PF06745.8 gi|116753608|ref|YP_842726.1| - 0.025 13.7 0.1 0.058 12.5 0.0 1.7 2 1 0 2 2 2 0 KaiC MipZ PF09140.6 gi|116753608|ref|YP_842726.1| - 0.034 13.2 0.6 0.5 9.4 0.1 2.2 2 0 0 2 2 2 0 ATPase MipZ Helicase_RecD PF05127.9 gi|116753608|ref|YP_842726.1| - 0.037 13.6 0.3 0.097 12.3 0.1 2.0 1 1 0 1 1 1 0 Helicase RecA PF00154.16 gi|116753608|ref|YP_842726.1| - 0.053 12.5 0.2 0.15 11.1 0.0 1.7 2 0 0 2 2 2 0 recA bacterial DNA recombination protein Zot PF05707.7 gi|116753608|ref|YP_842726.1| - 0.055 12.9 0.1 0.099 12.0 0.1 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) PRK PF00485.13 gi|116753608|ref|YP_842726.1| - 0.08 12.4 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family LpxK PF02606.9 gi|116753608|ref|YP_842726.1| - 0.097 11.6 0.3 0.17 10.7 0.2 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Death PF00531.17 gi|116753608|ref|YP_842726.1| - 0.13 11.9 0.0 0.45 10.3 0.0 1.8 2 0 0 2 2 1 0 Death domain CdhC PF03598.10 gi|116753609|ref|YP_842727.1| - 2.6e-171 569.6 0.2 3.6e-171 569.1 0.0 1.3 2 0 0 2 2 2 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CO_dh PF02552.11 gi|116753610|ref|YP_842728.1| - 2.1e-36 125.0 0.2 2.4e-36 124.8 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|116753610|ref|YP_842728.1| - 0.0015 18.2 0.0 0.0036 17.0 0.0 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.15 gi|116753611|ref|YP_842729.1| - 4.6e-92 309.0 7.9 1.5e-78 264.4 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_18 PF13746.1 gi|116753611|ref|YP_842729.1| - 6.4e-09 36.1 5.0 0.00049 20.4 0.6 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116753611|ref|YP_842729.1| - 2e-06 27.9 8.5 2e-06 27.9 5.9 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116753611|ref|YP_842729.1| - 3.5e-06 27.2 9.2 0.0052 17.0 0.2 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116753611|ref|YP_842729.1| - 1.4e-05 25.3 9.9 1.4e-05 25.3 6.9 3.2 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116753611|ref|YP_842729.1| - 3.4e-05 23.5 10.1 3.4e-05 23.5 7.0 3.0 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116753611|ref|YP_842729.1| - 4.1e-05 23.5 11.3 4.1e-05 23.5 7.9 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|116753611|ref|YP_842729.1| - 0.00046 19.6 20.1 0.002 17.6 2.4 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|116753611|ref|YP_842729.1| - 0.021 14.7 2.0 0.021 14.7 1.4 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|116753611|ref|YP_842729.1| - 0.49 11.1 14.1 37 5.1 2.2 3.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|116753611|ref|YP_842729.1| - 0.6 10.6 20.5 0.15 12.5 2.9 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116753611|ref|YP_842729.1| - 6.1 6.7 23.6 0.07 12.9 8.5 3.3 3 1 2 5 5 4 0 4Fe-4S dicluster domain CobD_Cbib PF03186.8 gi|116753612|ref|YP_842730.1| - 4.2e-91 305.0 2.0 4.9e-91 304.8 1.4 1.0 1 0 0 1 1 1 1 CobD/Cbib protein GPI-anchored PF10342.4 gi|116753613|ref|YP_842731.1| - 0.0067 16.8 4.6 0.047 14.1 0.6 2.9 2 1 0 2 2 2 1 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family DUF1565 PF07602.6 gi|116753613|ref|YP_842731.1| - 0.055 12.6 8.2 1.6 7.7 3.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1565) DNA_alkylation PF08713.6 gi|116753615|ref|YP_842733.1| - 1.2e-60 204.6 0.2 1.5e-60 204.3 0.2 1.1 1 0 0 1 1 1 1 DNA alkylation repair enzyme YvbH_ext PF11724.3 gi|116753615|ref|YP_842733.1| - 0.017 14.8 0.2 0.043 13.5 0.1 1.7 1 0 0 1 1 1 0 YvbH-like oligomerisation region DUF845 PF05820.6 gi|116753615|ref|YP_842733.1| - 0.07 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Baculovirus protein of unknown function (DUF845) Saccharop_dh_N PF04455.7 gi|116753616|ref|YP_842734.1| - 1.6e-38 130.9 0.0 2.8e-38 130.1 0.0 1.4 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|116753616|ref|YP_842734.1| - 0.026 14.2 0.4 1.6 8.5 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DNA_ligase_A_M PF01068.16 gi|116753617|ref|YP_842735.1| - 4.2e-19 68.7 0.0 1.5e-18 66.8 0.0 1.8 2 1 0 2 2 2 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|116753617|ref|YP_842735.1| - 2.4e-08 34.0 0.0 9.3e-08 32.0 0.0 1.9 1 1 0 1 1 1 1 RNA ligase CBS PF00571.23 gi|116753618|ref|YP_842736.1| - 4.2e-45 151.2 11.9 2.3e-13 49.6 0.4 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|116753619|ref|YP_842737.1| - 4.1e-47 157.7 7.7 5e-16 58.2 0.0 4.4 3 1 2 5 5 5 4 CBS domain Ribosomal_L9_C PF03948.9 gi|116753619|ref|YP_842737.1| - 0.035 14.1 0.0 2.5 8.2 0.0 2.6 2 0 0 2 2 2 0 Ribosomal protein L9, C-terminal domain CBS PF00571.23 gi|116753620|ref|YP_842738.1| - 4.5e-52 173.5 6.6 1.4e-13 50.3 0.0 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|116753621|ref|YP_842739.1| - 1.9e-53 178.0 12.4 2.6e-16 59.1 0.0 4.1 4 0 0 4 4 4 4 CBS domain PRC PF05239.11 gi|116753621|ref|YP_842739.1| - 0.00036 20.3 0.2 0.9 9.4 0.0 2.9 2 1 0 2 2 2 2 PRC-barrel domain MAGP PF05507.6 gi|116753621|ref|YP_842739.1| - 0.05 13.4 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 Microfibril-associated glycoprotein (MAGP) CBS PF00571.23 gi|116753622|ref|YP_842740.1| - 2.8e-35 119.8 5.3 4.7e-19 67.9 0.1 2.2 2 0 0 2 2 2 2 CBS domain MoCF_biosynth PF00994.19 gi|116753623|ref|YP_842741.1| - 9.9e-26 89.8 0.1 1.3e-25 89.4 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF77 PF01910.12 gi|116753625|ref|YP_842743.1| - 3.8e-26 90.5 0.8 4.2e-26 90.4 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 DUF1382 PF07131.6 gi|116753625|ref|YP_842743.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1382) SSF PF00474.12 gi|116753626|ref|YP_842744.1| - 8.9e-55 185.9 37.3 1.1e-54 185.6 25.8 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family CDP-OH_P_transf PF01066.16 gi|116753627|ref|YP_842745.1| - 6.4e-15 55.3 11.3 2.7e-14 53.2 7.8 1.9 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF2484 PF10658.4 gi|116753627|ref|YP_842745.1| - 0.051 13.6 0.5 0.051 13.6 0.3 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2484) AAA_18 PF13238.1 gi|116753628|ref|YP_842746.1| - 1.5e-24 86.7 0.0 2e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|116753628|ref|YP_842746.1| - 2.4e-14 54.2 0.1 3.6e-14 53.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|116753628|ref|YP_842746.1| - 0.0008 19.3 1.9 0.0018 18.2 0.6 2.1 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|116753628|ref|YP_842746.1| - 0.0021 17.9 0.0 1.3 8.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|116753628|ref|YP_842746.1| - 0.06 13.0 2.4 0.14 11.8 1.7 1.5 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|116753628|ref|YP_842746.1| - 0.084 12.5 0.1 0.19 11.4 0.0 1.6 2 0 0 2 2 2 0 NTPase MobB PF03205.9 gi|116753628|ref|YP_842746.1| - 0.13 11.9 1.0 6 6.5 0.1 2.7 2 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B KaiC PF06745.8 gi|116753628|ref|YP_842746.1| - 0.2 10.7 1.6 1.2 8.2 0.5 2.3 1 1 2 3 3 3 0 KaiC CoaE PF01121.15 gi|116753628|ref|YP_842746.1| - 0.22 10.8 1.3 1.2 8.5 0.9 2.4 1 1 0 1 1 1 0 Dephospho-CoA kinase Aminotran_1_2 PF00155.16 gi|116753629|ref|YP_842747.1| - 1.9e-49 168.5 0.0 2.3e-49 168.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|116753629|ref|YP_842747.1| - 1.2e-05 24.1 0.0 0.00026 19.7 0.0 2.0 2 0 0 2 2 2 1 Allinase Cys_Met_Meta_PP PF01053.15 gi|116753629|ref|YP_842747.1| - 0.00082 17.7 0.0 0.0012 17.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_MocR PF12897.2 gi|116753629|ref|YP_842747.1| - 0.15 10.5 0.0 0.19 10.2 0.0 1.1 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase Aminotran_3 PF00202.16 gi|116753630|ref|YP_842748.1| - 3e-106 355.0 0.0 3.6e-106 354.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|116753630|ref|YP_842748.1| - 9e-06 25.0 0.0 1.5e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|116753630|ref|YP_842748.1| - 1.3e-05 24.3 0.0 1.9e-05 23.7 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|116753630|ref|YP_842748.1| - 0.004 15.9 0.0 0.0082 14.9 0.0 1.5 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|116753630|ref|YP_842748.1| - 0.095 10.9 0.0 0.14 10.4 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Lactamase_B PF00753.22 gi|116753631|ref|YP_842749.1| - 6.4e-32 110.7 0.6 7.3e-32 110.5 0.4 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|116753631|ref|YP_842749.1| - 7.9e-06 25.5 0.0 1.2e-05 24.9 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|116753631|ref|YP_842749.1| - 0.031 14.0 0.0 0.072 12.7 0.0 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain NeuB PF03102.9 gi|116753631|ref|YP_842749.1| - 0.12 11.5 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 NeuB family ThiC PF01964.13 gi|116753632|ref|YP_842750.1| - 5.2e-175 581.9 0.0 5.9e-175 581.8 0.0 1.0 1 0 0 1 1 1 1 ThiC family PEP_mutase PF13714.1 gi|116753632|ref|YP_842750.1| - 0.0015 17.8 0.2 0.014 14.6 0.0 2.6 2 2 1 3 3 3 1 Phosphoenolpyruvate phosphomutase Amidohydro_4 PF13147.1 gi|116753632|ref|YP_842750.1| - 0.025 14.6 6.7 0.1 12.5 0.6 2.9 2 1 1 3 3 3 0 Amidohydrolase NurA PF09376.5 gi|116753633|ref|YP_842751.1| - 8.3e-08 32.0 0.3 2.4e-06 27.2 0.2 2.2 1 1 0 1 1 1 1 NurA domain TraB PF01963.12 gi|116753634|ref|YP_842752.1| - 1.9e-54 184.8 0.1 2.9e-54 184.2 0.1 1.3 1 0 0 1 1 1 1 TraB family CBS PF00571.23 gi|116753635|ref|YP_842753.1| - 9.2e-30 102.1 5.8 7.1e-16 57.7 0.3 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|116753635|ref|YP_842753.1| - 5.1e-20 71.2 13.9 8.8e-13 47.6 5.1 2.3 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|116753635|ref|YP_842753.1| - 0.00014 21.2 4.0 0.00014 21.2 2.8 2.4 2 1 0 2 2 2 1 Peptidase M50B-like DUF456 PF04306.8 gi|116753635|ref|YP_842753.1| - 0.037 14.0 10.4 1.4 8.9 2.5 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF456) MRP-S32 PF10210.4 gi|116753635|ref|YP_842753.1| - 0.099 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S32 HhH-GPD PF00730.20 gi|116753636|ref|YP_842754.1| - 0.0012 19.0 0.0 0.0025 18.0 0.0 1.7 1 1 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein PolyA_pol_RNAbd PF12627.2 gi|116753636|ref|YP_842754.1| - 0.15 11.6 1.5 8.1 6.1 0.1 3.1 1 1 2 3 3 3 0 Probable RNA and SrmB- binding site of polymerase A DUF2497 PF10691.4 gi|116753636|ref|YP_842754.1| - 0.16 11.9 0.6 0.35 10.8 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2497) Lactamase_B PF00753.22 gi|116753637|ref|YP_842755.1| - 2.1e-21 76.4 0.0 3.6e-21 75.7 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|116753637|ref|YP_842755.1| - 0.0052 16.3 0.1 0.0085 15.6 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|116753637|ref|YP_842755.1| - 0.095 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.20 gi|116753637|ref|YP_842755.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin NosD PF05048.8 gi|116753639|ref|YP_842757.1| - 5.8e-47 159.8 40.8 2.5e-36 125.0 17.7 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|116753639|ref|YP_842757.1| - 5.3e-17 62.0 21.8 5.3e-17 62.0 15.1 3.3 2 1 1 3 3 3 3 Right handed beta helix region MFS_1 PF07690.11 gi|116753640|ref|YP_842758.1| - 2.3e-64 217.3 77.8 8.1e-52 176.0 36.0 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|116753640|ref|YP_842758.1| - 9.9e-10 37.5 20.3 9.9e-10 37.5 14.0 3.4 2 2 0 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|116753640|ref|YP_842758.1| - 1.4e-06 26.6 24.8 2e-06 26.2 9.2 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|116753640|ref|YP_842758.1| - 6.3e-06 24.8 37.0 1.3e-05 23.8 11.0 2.9 1 1 1 2 2 2 2 MFS/sugar transport protein Peptidase_M20 PF01546.23 gi|116753641|ref|YP_842759.1| - 9.4e-33 113.3 0.0 1.2e-32 112.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|116753641|ref|YP_842759.1| - 3.7e-20 71.7 0.0 8.8e-20 70.5 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|116753641|ref|YP_842759.1| - 0.0026 17.5 0.0 0.0047 16.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 MobB PF03205.9 gi|116753642|ref|YP_842760.1| - 1.6e-21 76.4 1.0 1.8e-21 76.2 0.7 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|116753642|ref|YP_842760.1| - 0.00042 20.3 0.1 0.00045 20.2 0.1 1.2 1 0 0 1 1 1 1 AAA ATPase domain GTP_EFTU PF00009.22 gi|116753642|ref|YP_842760.1| - 0.00079 18.9 0.9 0.0014 18.0 0.6 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|116753642|ref|YP_842760.1| - 0.001 19.0 0.0 0.0011 18.8 0.0 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.18 gi|116753642|ref|YP_842760.1| - 0.0011 18.8 0.1 0.0015 18.3 0.1 1.2 1 0 0 1 1 1 1 Dynamin family AAA_17 PF13207.1 gi|116753642|ref|YP_842760.1| - 0.0024 18.6 0.1 0.0029 18.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|116753642|ref|YP_842760.1| - 0.0024 18.3 0.4 0.0066 16.9 0.1 1.8 2 1 0 2 2 1 1 Miro-like protein cobW PF02492.14 gi|116753642|ref|YP_842760.1| - 0.0063 15.9 0.1 0.0075 15.7 0.1 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|116753642|ref|YP_842760.1| - 0.0079 16.4 0.1 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.1 gi|116753642|ref|YP_842760.1| - 0.01 15.7 0.4 0.014 15.3 0.3 1.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|116753642|ref|YP_842760.1| - 0.02 14.4 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|116753642|ref|YP_842760.1| - 0.028 13.9 0.2 0.052 13.0 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF463 PF04317.7 gi|116753642|ref|YP_842760.1| - 0.034 12.7 0.1 0.045 12.3 0.0 1.1 1 0 0 1 1 1 0 YcjX-like family, DUF463 NTPase_1 PF03266.10 gi|116753642|ref|YP_842760.1| - 0.038 13.6 0.3 0.08 12.6 0.1 1.6 1 1 0 1 1 1 0 NTPase AAA_14 PF13173.1 gi|116753642|ref|YP_842760.1| - 0.042 13.7 0.1 0.069 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|116753642|ref|YP_842760.1| - 0.046 14.0 0.1 0.058 13.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|116753642|ref|YP_842760.1| - 0.049 13.1 0.1 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ArgK PF03308.11 gi|116753642|ref|YP_842760.1| - 0.051 12.3 0.6 0.078 11.7 0.1 1.5 2 0 0 2 2 2 0 ArgK protein AAA_28 PF13521.1 gi|116753642|ref|YP_842760.1| - 0.061 13.2 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|116753642|ref|YP_842760.1| - 0.065 13.3 0.1 0.072 13.2 0.1 1.4 1 1 0 1 1 1 0 AAA domain FeoB_N PF02421.13 gi|116753642|ref|YP_842760.1| - 0.066 12.4 0.0 0.093 12.0 0.0 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B T2SE PF00437.15 gi|116753642|ref|YP_842760.1| - 0.07 12.0 0.0 0.08 11.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|116753642|ref|YP_842760.1| - 0.071 12.7 0.0 0.092 12.4 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase Methyltransf_24 PF13578.1 gi|116753642|ref|YP_842760.1| - 0.077 13.8 0.0 0.11 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Thymidylate_kin PF02223.12 gi|116753642|ref|YP_842760.1| - 0.082 12.2 0.1 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Thymidylate kinase NACHT PF05729.7 gi|116753642|ref|YP_842760.1| - 0.095 12.3 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 NACHT domain DUF258 PF03193.11 gi|116753642|ref|YP_842760.1| - 0.1 11.7 0.5 0.13 11.4 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 GBP PF02263.14 gi|116753642|ref|YP_842760.1| - 0.15 11.1 0.1 0.21 10.6 0.1 1.2 1 0 0 1 1 1 0 Guanylate-binding protein, N-terminal domain ABC_ATPase PF09818.4 gi|116753642|ref|YP_842760.1| - 0.16 10.5 0.3 0.21 10.1 0.2 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_15 PF13175.1 gi|116753642|ref|YP_842760.1| - 0.16 10.9 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain UPF0016 PF01169.14 gi|116753643|ref|YP_842761.1| - 2.5e-43 146.0 20.2 6.6e-23 80.6 4.8 2.0 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 TauE PF01925.14 gi|116753643|ref|YP_842761.1| - 0.0012 18.4 17.5 0.014 14.8 1.4 2.7 1 1 2 3 3 3 2 Sulfite exporter TauE/SafE Cation_efflux PF01545.16 gi|116753644|ref|YP_842762.1| - 7.5e-72 241.7 12.3 9.8e-72 241.4 8.5 1.0 1 0 0 1 1 1 1 Cation efflux family Ubiquitin_2 PF14560.1 gi|116753644|ref|YP_842762.1| - 0.046 13.9 0.0 0.12 12.6 0.0 1.7 2 0 0 2 2 2 0 Ubiquitin-like domain DUF4241 PF14025.1 gi|116753645|ref|YP_842763.1| - 0.14 11.8 0.1 0.67 9.6 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4241) Ribosomal_L7Ae PF01248.21 gi|116753647|ref|YP_842765.1| - 7.3e-25 86.3 0.2 8.5e-25 86.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|116753647|ref|YP_842765.1| - 0.0019 17.9 0.0 0.0025 17.5 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain YtxH PF12732.2 gi|116753647|ref|YP_842765.1| - 0.28 11.5 2.6 0.41 11.0 0.9 1.8 2 0 0 2 2 2 0 YtxH-like protein Ribosomal_S28e PF01200.13 gi|116753648|ref|YP_842766.1| - 1.2e-30 105.0 1.4 1.3e-30 104.9 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|116753649|ref|YP_842767.1| - 3.7e-20 71.5 1.6 4e-20 71.4 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|116753649|ref|YP_842767.1| - 5.5e-06 25.9 2.5 8e-06 25.3 1.7 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|116753649|ref|YP_842767.1| - 0.0004 20.1 1.7 0.00048 19.9 1.2 1.1 1 0 0 1 1 1 1 YHS domain SerH PF06873.6 gi|116753649|ref|YP_842767.1| - 0.00057 18.6 0.0 0.00057 18.6 0.0 1.0 1 0 0 1 1 1 1 Cell surface immobilisation antigen SerH Arc_trans_TRASH PF08394.5 gi|116753649|ref|YP_842767.1| - 0.039 14.1 2.8 0.07 13.3 1.9 1.6 1 1 0 1 1 1 0 Archaeal TRASH domain zf-HIT PF04438.11 gi|116753649|ref|YP_842767.1| - 0.039 13.5 0.1 0.061 12.9 0.1 1.3 1 1 0 1 1 1 0 HIT zinc finger DUF164 PF02591.10 gi|116753649|ref|YP_842767.1| - 0.043 13.6 0.2 0.058 13.2 0.1 1.3 1 0 0 1 1 1 0 Putative zinc ribbon domain zf-MYND PF01753.13 gi|116753649|ref|YP_842767.1| - 0.048 13.5 0.0 0.08 12.8 0.0 1.4 1 1 0 1 1 1 0 MYND finger Zn_ribbon_recom PF13408.1 gi|116753649|ref|YP_842767.1| - 0.42 10.9 4.1 0.54 10.5 2.9 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C4_ClpX PF06689.8 gi|116753649|ref|YP_842767.1| - 0.55 9.7 3.4 0.9 9.1 2.4 1.7 1 1 0 1 1 1 0 ClpX C4-type zinc finger DUF581 PF04570.9 gi|116753649|ref|YP_842767.1| - 1.7 7.9 4.4 7.5 5.9 3.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF581) NDK PF00334.14 gi|116753650|ref|YP_842768.1| - 2.1e-56 189.4 0.0 2.3e-56 189.3 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase DUF99 PF01949.11 gi|116753651|ref|YP_842769.1| - 3.8e-64 215.2 0.0 4.7e-64 214.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 HMGL-like PF00682.14 gi|116753652|ref|YP_842770.1| - 1.8e-21 76.9 0.0 2.4e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 HMGL-like DUF2517 PF10725.4 gi|116753653|ref|YP_842771.1| - 0.019 14.6 0.1 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2517) Metallophos_2 PF12850.2 gi|116753655|ref|YP_842773.1| - 4.8e-16 58.9 0.0 6.4e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|116753655|ref|YP_842773.1| - 1.1e-14 54.2 0.0 2.6e-14 53.0 0.0 1.6 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|116753655|ref|YP_842773.1| - 5.6e-12 45.4 0.2 2.9e-11 43.1 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase CBS PF00571.23 gi|116753656|ref|YP_842774.1| - 4.3e-29 100.0 1.2 3.4e-19 68.3 0.3 2.0 2 0 0 2 2 2 2 CBS domain Corona_I PF03187.9 gi|116753656|ref|YP_842774.1| - 0.085 11.9 0.0 0.096 11.8 0.0 1.1 1 0 0 1 1 1 0 Corona nucleocapsid I protein Metallophos_2 PF12850.2 gi|116753657|ref|YP_842775.1| - 7.4e-17 61.6 0.0 1.1e-16 61.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|116753657|ref|YP_842775.1| - 0.00039 19.8 0.5 0.0059 16.0 0.2 2.3 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Peripla_BP_2 PF01497.13 gi|116753658|ref|YP_842776.1| - 9.3e-26 90.4 0.0 1.2e-25 90.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DDE_Tnp_1_5 PF13737.1 gi|116753659|ref|YP_842777.1| - 1.2e-28 99.4 0.0 2.9e-27 95.0 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|116753659|ref|YP_842777.1| - 1.9e-20 73.3 0.4 4.5e-20 72.1 0.2 1.6 1 1 0 1 1 1 1 Transposase DDE domain rve PF00665.21 gi|116753659|ref|YP_842777.1| - 0.12 12.4 0.1 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain UspB PF10625.4 gi|116753660|ref|YP_842778.1| - 0.006 16.3 0.0 0.007 16.1 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein B (UspB) Peripla_BP_2 PF01497.13 gi|116753660|ref|YP_842778.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein His_biosynth PF00977.16 gi|116753662|ref|YP_842780.1| - 8.8e-33 113.4 0.1 9.9e-33 113.3 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|116753662|ref|YP_842780.1| - 1.6e-05 24.1 0.3 2.5e-05 23.4 0.2 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|116753662|ref|YP_842780.1| - 0.16 11.0 0.3 0.75 8.7 0.1 2.0 2 1 0 3 3 3 0 Indole-3-glycerol phosphate synthase DUF556 PF04476.8 gi|116753663|ref|YP_842781.1| - 1.1e-95 319.3 0.4 1.2e-95 319.1 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) QRPTase_C PF01729.14 gi|116753663|ref|YP_842781.1| - 0.0018 17.8 0.0 0.075 12.5 0.0 2.2 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Pterin_bind PF00809.17 gi|116753663|ref|YP_842781.1| - 0.11 11.9 0.2 5.5 6.2 0.0 2.8 3 0 0 3 3 3 0 Pterin binding enzyme DUF3747 PF12565.3 gi|116753664|ref|YP_842782.1| - 0.081 11.9 0.0 0.15 11.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3747) Radical_SAM PF04055.16 gi|116753665|ref|YP_842783.1| - 1.6e-15 57.6 0.0 2.3e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|116753665|ref|YP_842783.1| - 2e-09 37.6 0.8 8.1e-09 35.6 0.2 2.2 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|116753665|ref|YP_842783.1| - 0.00025 21.1 0.0 0.00046 20.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|116753665|ref|YP_842783.1| - 0.00037 20.4 0.0 0.00069 19.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain polyprenyl_synt PF00348.12 gi|116753666|ref|YP_842784.1| - 6.9e-44 149.6 0.0 8.5e-44 149.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF751 PF05421.6 gi|116753666|ref|YP_842784.1| - 0.049 13.9 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF751) TspO_MBR PF03073.10 gi|116753667|ref|YP_842785.1| - 9e-52 174.5 16.0 1e-51 174.3 11.1 1.0 1 0 0 1 1 1 1 TspO/MBR family DUF739 PF05339.6 gi|116753669|ref|YP_842787.1| - 8.4e-59 197.3 0.0 1.1e-58 196.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF739) GCHY-1 PF02649.9 gi|116753670|ref|YP_842788.1| - 3.5e-92 308.5 0.4 4e-92 308.3 0.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 TerY-C PF15616.1 gi|116753670|ref|YP_842788.1| - 0.075 12.9 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 TerY-C metal binding domain p31comet PF06581.7 gi|116753670|ref|YP_842788.1| - 0.079 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Mad1 and Cdc20-bound-Mad2 binding PMC2NT PF08066.7 gi|116753671|ref|YP_842789.1| - 0.15 12.3 0.6 0.3 11.4 0.3 1.6 1 1 1 2 2 2 0 PMC2NT (NUC016) domain UPF0184 PF03670.8 gi|116753671|ref|YP_842789.1| - 0.57 10.3 5.9 2.1 8.5 0.9 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) YihI PF04220.7 gi|116753671|ref|YP_842789.1| - 1.5 8.0 3.8 5.5 6.2 2.6 1.8 1 1 0 1 1 1 0 Der GTPase activator (YihI) DUF318 PF03773.8 gi|116753672|ref|YP_842790.1| - 4.8e-51 173.5 27.5 1.8e-50 171.6 19.0 1.7 1 1 0 1 1 1 1 Predicted permease PsaX PF08078.7 gi|116753672|ref|YP_842790.1| - 9.7 6.2 7.7 2.1 8.3 1.0 2.8 3 0 0 3 3 3 0 PsaX family eRF1_2 PF03464.10 gi|116753674|ref|YP_842792.1| - 7.6e-39 133.0 0.0 1.2e-38 132.4 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|116753674|ref|YP_842792.1| - 1.5e-31 109.0 0.0 4.7e-31 107.3 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|116753674|ref|YP_842792.1| - 1.1e-26 93.0 0.0 1.9e-26 92.1 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 DNA_ligase_ZBD PF03119.11 gi|116753674|ref|YP_842792.1| - 0.002 17.8 1.3 0.16 11.6 0.1 2.6 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.9 gi|116753674|ref|YP_842792.1| - 0.047 13.1 0.6 0.34 10.4 0.0 2.7 3 0 0 3 3 3 0 Rad50 zinc hook motif DUF1936 PF09151.5 gi|116753674|ref|YP_842792.1| - 1 8.9 5.3 1.9 8.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Zn-ribbon_8 PF09723.5 gi|116753674|ref|YP_842792.1| - 2.5 8.1 8.6 0.29 11.0 1.4 2.3 2 0 0 2 2 2 0 Zinc ribbon domain RNA_binding PF01877.12 gi|116753675|ref|YP_842793.1| - 6.7e-21 74.5 0.0 1.2e-20 73.6 0.0 1.4 1 1 0 1 1 1 1 RNA binding AP_endonuc_2 PF01261.19 gi|116753676|ref|YP_842794.1| - 4.3e-34 117.6 0.1 5.2e-34 117.4 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Translin PF01997.11 gi|116753677|ref|YP_842795.1| - 3.8e-41 140.9 0.8 4.6e-41 140.6 0.6 1.1 1 0 0 1 1 1 1 Translin family tRNA-synt_2d PF01409.15 gi|116753678|ref|YP_842796.1| - 9.1e-54 182.2 0.0 2.4e-49 167.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|116753678|ref|YP_842796.1| - 0.0017 18.0 0.0 0.0056 16.2 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|116753678|ref|YP_842796.1| - 0.04 12.6 0.1 2.7 6.6 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) EntA_Immun PF08951.5 gi|116753678|ref|YP_842796.1| - 0.1 12.7 0.2 0.24 11.5 0.0 1.6 2 0 0 2 2 2 0 Enterocin A Immunity HHH_5 PF14520.1 gi|116753678|ref|YP_842796.1| - 0.21 11.8 0.7 0.49 10.6 0.1 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain Rib_5-P_isom_A PF06026.9 gi|116753679|ref|YP_842797.1| - 4.6e-57 192.0 0.2 5.4e-57 191.8 0.1 1.0 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IF-2B PF01008.12 gi|116753680|ref|YP_842798.1| - 2.3e-80 269.6 0.0 3e-80 269.2 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family SUI1 PF01253.17 gi|116753681|ref|YP_842799.1| - 1e-23 82.8 1.5 1.4e-23 82.4 1.0 1.2 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|116753681|ref|YP_842799.1| - 0.038 14.2 0.1 0.057 13.6 0.1 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.10 gi|116753681|ref|YP_842799.1| - 0.25 10.5 1.3 0.3 10.2 0.9 1.1 1 0 0 1 1 1 0 DTW domain SSF PF00474.12 gi|116753682|ref|YP_842800.1| - 1.8e-26 92.7 33.6 9.4e-25 87.0 23.3 2.6 1 1 0 1 1 1 1 Sodium:solute symporter family tRNA-synt_1b PF00579.20 gi|116753683|ref|YP_842801.1| - 1.2e-39 136.1 0.0 4.5e-22 78.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) YbjQ_1 PF01906.12 gi|116753683|ref|YP_842801.1| - 0.13 12.6 0.4 0.51 10.7 0.0 2.1 2 0 0 2 2 2 0 Putative heavy-metal-binding SRP54 PF00448.17 gi|116753684|ref|YP_842802.1| - 2.5e-70 235.9 3.7 4e-70 235.2 2.5 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|116753684|ref|YP_842802.1| - 9.5e-32 109.3 4.3 9.8e-32 109.3 1.4 2.2 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|116753684|ref|YP_842802.1| - 4e-19 68.4 1.7 1.3e-17 63.6 0.0 3.2 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|116753684|ref|YP_842802.1| - 4e-09 36.1 3.8 1.8e-08 34.0 1.3 2.6 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|116753684|ref|YP_842802.1| - 1e-05 25.0 1.5 0.00017 21.1 1.1 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|116753684|ref|YP_842802.1| - 3.9e-05 23.3 0.0 0.00011 21.9 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|116753684|ref|YP_842802.1| - 6.9e-05 22.5 0.2 0.00034 20.3 0.0 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|116753684|ref|YP_842802.1| - 0.00012 21.9 0.0 0.00027 20.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|116753684|ref|YP_842802.1| - 0.00014 22.6 0.0 0.0005 20.8 0.0 2.0 1 0 0 1 1 1 1 AAA domain 6PF2K PF01591.13 gi|116753684|ref|YP_842802.1| - 0.00024 20.2 0.3 0.00078 18.5 0.0 1.9 2 0 0 2 2 2 1 6-phosphofructo-2-kinase Zeta_toxin PF06414.7 gi|116753684|ref|YP_842802.1| - 0.00051 19.1 0.1 0.0015 17.6 0.0 1.7 1 1 0 1 1 1 1 Zeta toxin ArgK PF03308.11 gi|116753684|ref|YP_842802.1| - 0.00075 18.3 0.2 0.0027 16.5 0.1 1.9 1 1 0 1 1 1 1 ArgK protein SRPRB PF09439.5 gi|116753684|ref|YP_842802.1| - 0.0011 18.2 0.2 0.37 9.9 0.0 2.4 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_16 PF13191.1 gi|116753684|ref|YP_842802.1| - 0.0019 18.1 0.4 0.0063 16.5 0.1 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|116753684|ref|YP_842802.1| - 0.002 18.4 0.0 0.0052 17.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|116753684|ref|YP_842802.1| - 0.0032 16.7 0.0 0.0071 15.5 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 MMR_HSR1 PF01926.18 gi|116753684|ref|YP_842802.1| - 0.0033 17.3 0.1 0.017 15.0 0.0 2.2 2 1 0 2 2 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|116753684|ref|YP_842802.1| - 0.0064 16.6 0.1 0.029 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|116753684|ref|YP_842802.1| - 0.0065 15.1 0.1 0.012 14.2 0.1 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.1 gi|116753684|ref|YP_842802.1| - 0.011 15.4 0.0 0.038 13.7 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain AAA_31 PF13614.1 gi|116753684|ref|YP_842802.1| - 0.012 15.5 0.0 0.34 10.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|116753684|ref|YP_842802.1| - 0.017 14.5 0.1 0.055 12.8 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase ResIII PF04851.10 gi|116753684|ref|YP_842802.1| - 0.017 14.9 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_10 PF12846.2 gi|116753684|ref|YP_842802.1| - 0.018 14.5 0.1 0.028 13.8 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|116753684|ref|YP_842802.1| - 0.044 13.4 0.1 0.094 12.3 0.1 1.5 1 0 0 1 1 1 0 NACHT domain PduV-EutP PF10662.4 gi|116753684|ref|YP_842802.1| - 0.049 13.1 1.2 2.7 7.4 0.1 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|116753684|ref|YP_842802.1| - 0.051 13.5 0.8 0.29 11.0 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|116753684|ref|YP_842802.1| - 0.063 13.4 0.4 0.27 11.4 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|116753684|ref|YP_842802.1| - 0.064 12.9 0.0 0.2 11.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|116753684|ref|YP_842802.1| - 0.081 12.3 0.3 0.21 10.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|116753684|ref|YP_842802.1| - 0.32 11.2 1.2 0.81 9.9 0.8 1.9 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|116753684|ref|YP_842802.1| - 3.5 6.5 8.9 1.6 7.7 0.1 3.0 4 0 0 4 4 4 0 Anion-transporting ATPase DUF973 PF06157.6 gi|116753685|ref|YP_842803.1| - 0.068 12.1 1.3 0.084 11.8 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) Grp1_Fun34_YaaH PF01184.14 gi|116753685|ref|YP_842803.1| - 0.15 11.3 3.2 0.15 11.3 2.2 1.1 1 0 0 1 1 1 0 GPR1/FUN34/yaaH family DUF2834 PF11196.3 gi|116753685|ref|YP_842803.1| - 0.23 11.6 2.5 0.26 11.4 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2834) Tetraspannin PF00335.15 gi|116753685|ref|YP_842803.1| - 0.39 9.9 4.0 0.43 9.8 2.8 1.0 1 0 0 1 1 1 0 Tetraspanin family Yip1 PF04893.12 gi|116753685|ref|YP_842803.1| - 0.45 10.0 7.7 0.5 9.8 5.3 1.1 1 0 0 1 1 1 0 Yip1 domain DUF3742 PF12553.3 gi|116753685|ref|YP_842803.1| - 0.71 10.3 3.2 0.94 9.9 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) YtpI PF14007.1 gi|116753685|ref|YP_842803.1| - 0.98 9.3 3.7 0.67 9.9 0.1 1.9 1 1 1 2 2 2 0 YtpI-like protein PgaD PF13994.1 gi|116753685|ref|YP_842803.1| - 0.98 8.8 4.4 1 8.8 3.0 1.1 1 0 0 1 1 1 0 PgaD-like protein Neurensin PF14927.1 gi|116753685|ref|YP_842803.1| - 1.6 8.0 3.9 1.6 8.0 0.2 1.9 2 0 0 2 2 2 0 Neurensin DUF308 PF03729.8 gi|116753685|ref|YP_842803.1| - 2.9 7.9 12.7 1.2 9.1 4.9 2.1 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF3185 PF11381.3 gi|116753685|ref|YP_842803.1| - 3.1 7.6 8.2 4.1 7.2 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) PEMT PF04191.8 gi|116753685|ref|YP_842803.1| - 4.4 7.4 6.0 21 5.2 0.2 2.2 1 1 1 2 2 2 0 Phospholipid methyltransferase DUF3175 PF11373.3 gi|116753686|ref|YP_842804.1| - 1.6e-05 24.8 7.5 0.86 9.6 0.2 3.3 3 0 0 3 3 3 3 Protein of unknown function (DUF3175) DUF3907 PF13047.1 gi|116753686|ref|YP_842804.1| - 0.00015 21.4 7.8 0.23 11.0 0.3 3.1 1 1 2 3 3 3 3 Protein of unknown function (DUF3907) SPT2 PF08243.6 gi|116753686|ref|YP_842804.1| - 0.00015 22.0 11.3 0.24 11.7 0.7 3.1 1 1 2 3 3 3 3 SPT2 chromatin protein CRISPR_Cas2 PF09827.4 gi|116753686|ref|YP_842804.1| - 0.0006 19.8 1.8 1.6 8.9 0.0 3.0 1 1 2 3 3 3 2 CRISPR associated protein Cas2 PMT_C PF11647.3 gi|116753686|ref|YP_842804.1| - 0.0034 16.9 0.5 2.2 7.9 0.0 3.2 3 0 0 3 3 3 1 C-terminal region of Pasteurella multocida toxin residues 569-1285 DUF2439 PF10382.4 gi|116753686|ref|YP_842804.1| - 0.0044 17.1 0.2 14 6.0 0.0 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF2439) BBS2_Mid PF14783.1 gi|116753686|ref|YP_842804.1| - 0.082 12.6 0.2 6.3 6.6 0.0 2.9 3 0 0 3 3 3 0 Ciliary BBSome complex subunit 2, middle region DUF4398 PF14346.1 gi|116753686|ref|YP_842804.1| - 1.5 8.8 22.4 2.9 7.9 0.9 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4398) UPF0118 PF01594.11 gi|116753687|ref|YP_842805.1| - 2.9e-41 141.5 30.4 4.1e-41 141.0 21.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF20 Radical_SAM PF04055.16 gi|116753688|ref|YP_842806.1| - 7.9e-22 78.1 0.0 2.4e-21 76.6 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|116753688|ref|YP_842806.1| - 1e-13 50.9 0.1 2e-13 49.9 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|116753688|ref|YP_842806.1| - 7.7e-12 44.8 0.0 1.5e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 TRAM domain HTH_IclR PF09339.5 gi|116753689|ref|YP_842807.1| - 0.012 15.1 0.0 0.026 14.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain MbeD_MobD PF04899.7 gi|116753689|ref|YP_842807.1| - 0.019 14.8 0.2 0.048 13.5 0.1 1.7 1 1 0 1 1 1 0 MbeD/MobD like MarR_2 PF12802.2 gi|116753689|ref|YP_842807.1| - 0.033 13.8 0.0 0.082 12.5 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|116753689|ref|YP_842807.1| - 0.037 13.4 0.0 0.086 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Spectrin PF00435.16 gi|116753689|ref|YP_842807.1| - 0.056 13.7 0.2 0.15 12.3 0.1 1.9 1 1 0 1 1 1 0 Spectrin repeat Hydrolase PF00702.21 gi|116753690|ref|YP_842808.1| - 4.2e-13 50.1 0.3 8.1e-13 49.2 0.2 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|116753690|ref|YP_842808.1| - 1.6e-11 44.7 0.1 1.8e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|116753690|ref|YP_842808.1| - 8.8e-05 22.1 0.0 0.0052 16.3 0.0 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|116753690|ref|YP_842808.1| - 0.0001 22.5 0.0 0.00043 20.5 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|116753690|ref|YP_842808.1| - 0.0051 16.6 0.0 0.03 14.1 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase SRPRB PF09439.5 gi|116753690|ref|YP_842808.1| - 0.027 13.7 0.0 0.041 13.0 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Lactamase_B_2 PF12706.2 gi|116753691|ref|YP_842809.1| - 2.1e-07 30.6 0.1 2.9e-07 30.2 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|116753691|ref|YP_842809.1| - 8.1e-05 22.3 0.0 0.00021 21.0 0.0 1.7 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|116753691|ref|YP_842809.1| - 4.5 6.8 6.6 17 4.9 4.6 2.0 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily ABC_tran PF00005.22 gi|116753692|ref|YP_842810.1| - 7.3e-28 97.5 0.0 1.8e-27 96.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|116753692|ref|YP_842810.1| - 3.5e-15 56.7 0.1 1.5e-07 31.6 0.0 2.4 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|116753692|ref|YP_842810.1| - 1.9e-06 28.3 0.1 3e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|116753692|ref|YP_842810.1| - 5.2e-05 22.4 0.0 0.024 13.6 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|116753692|ref|YP_842810.1| - 0.00022 20.7 0.1 0.00044 19.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|116753692|ref|YP_842810.1| - 0.00046 19.4 0.0 0.39 9.9 0.0 2.7 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain DUF4162 PF13732.1 gi|116753692|ref|YP_842810.1| - 0.0012 19.2 0.0 0.002 18.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|116753692|ref|YP_842810.1| - 0.002 17.6 0.0 1.8 7.9 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_14 PF13173.1 gi|116753692|ref|YP_842810.1| - 0.012 15.5 0.0 0.72 9.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|116753692|ref|YP_842810.1| - 0.013 15.1 0.2 0.021 14.5 0.0 1.5 2 0 0 2 2 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|116753692|ref|YP_842810.1| - 0.021 14.5 0.1 0.092 12.5 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|116753692|ref|YP_842810.1| - 0.038 13.3 0.1 0.15 11.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|116753692|ref|YP_842810.1| - 0.05 13.0 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase SbcCD_C PF13558.1 gi|116753692|ref|YP_842810.1| - 0.052 13.4 0.0 0.11 12.4 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit T2SE PF00437.15 gi|116753692|ref|YP_842810.1| - 0.054 12.3 0.0 0.081 11.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.9 gi|116753692|ref|YP_842810.1| - 0.097 12.3 0.0 0.34 10.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|116753692|ref|YP_842810.1| - 0.11 12.1 0.0 0.62 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|116753692|ref|YP_842810.1| - 0.13 10.7 0.0 0.19 10.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|116753692|ref|YP_842810.1| - 0.14 12.1 0.0 0.34 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain cobW PF02492.14 gi|116753692|ref|YP_842810.1| - 0.2 11.0 0.5 0.58 9.5 0.3 1.8 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC2_membrane PF01061.19 gi|116753693|ref|YP_842811.1| - 1.3e-10 40.7 24.8 1.3e-10 40.7 17.2 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|116753693|ref|YP_842811.1| - 0.0092 15.0 32.1 0.013 14.5 22.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ADC PF06314.6 gi|116753693|ref|YP_842811.1| - 0.17 11.1 0.2 0.25 10.6 0.2 1.2 1 0 0 1 1 1 0 Acetoacetate decarboxylase (ADC) E1-E2_ATPase PF00122.15 gi|116753694|ref|YP_842812.1| - 9.9e-74 247.2 0.3 9.9e-74 247.2 0.2 3.1 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|116753694|ref|YP_842812.1| - 7.6e-40 136.3 2.9 7.6e-40 136.3 2.0 2.2 4 0 0 4 4 4 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|116753694|ref|YP_842812.1| - 4.4e-36 125.3 0.0 1.1e-35 124.0 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|116753694|ref|YP_842812.1| - 1.3e-21 75.8 0.3 7.1e-19 67.0 0.0 2.7 2 0 0 2 2 2 2 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|116753694|ref|YP_842812.1| - 4.8e-19 68.1 0.0 1.1e-18 66.9 0.0 1.7 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|116753694|ref|YP_842812.1| - 4.8e-16 59.4 0.1 1.3e-15 58.0 0.1 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|116753694|ref|YP_842812.1| - 0.00064 19.3 2.3 0.0058 16.2 0.7 2.4 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase DUF1128 PF06569.6 gi|116753694|ref|YP_842812.1| - 0.11 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1128) DeoC PF01791.4 gi|116753695|ref|YP_842813.1| - 7.6e-42 143.2 0.0 9.4e-42 142.9 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase RAP1 PF07218.6 gi|116753697|ref|YP_842815.1| - 0.35 8.9 1.3 0.46 8.5 0.9 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) Cyclase PF04199.8 gi|116753698|ref|YP_842816.1| - 4.2e-17 62.3 0.9 2.7e-15 56.4 0.6 2.2 1 1 0 1 1 1 1 Putative cyclase PAS_9 PF13426.1 gi|116753699|ref|YP_842817.1| - 2.9e-70 233.2 0.1 2.4e-24 85.6 0.0 7.0 6 1 0 6 6 6 6 PAS domain PAS PF00989.19 gi|116753699|ref|YP_842817.1| - 4.9e-53 177.7 0.5 2.6e-11 43.3 0.0 7.5 7 1 0 7 7 7 5 PAS fold PAS_4 PF08448.5 gi|116753699|ref|YP_842817.1| - 7.5e-49 164.3 0.3 8.4e-14 51.5 0.0 7.8 6 2 0 6 6 6 4 PAS fold PAS_8 PF13188.1 gi|116753699|ref|YP_842817.1| - 8.1e-33 111.1 0.6 2e-05 24.2 0.0 6.7 6 0 0 6 6 6 5 PAS domain HATPase_c PF02518.21 gi|116753699|ref|YP_842817.1| - 6.7e-31 106.2 0.0 1.6e-30 105.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|116753699|ref|YP_842817.1| - 1.6e-27 95.7 0.4 4.8e-27 94.1 0.1 2.0 2 0 0 2 2 1 1 Response regulator receiver domain PAS_3 PF08447.6 gi|116753699|ref|YP_842817.1| - 1.7e-21 76.0 0.6 2.4e-08 33.9 0.0 6.9 6 0 0 6 6 6 5 PAS fold HisKA PF00512.20 gi|116753699|ref|YP_842817.1| - 1.6e-19 69.6 0.2 1.6e-19 69.6 0.2 3.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|116753699|ref|YP_842817.1| - 1.4e-16 61.0 0.0 8.4e-10 38.9 0.0 2.7 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|116753699|ref|YP_842817.1| - 1.8e-14 53.9 0.0 3.8e-05 23.7 0.0 3.9 3 0 0 3 3 3 2 GAF domain Hpt PF01627.18 gi|116753699|ref|YP_842817.1| - 2.6e-14 52.9 0.5 1.8e-13 50.2 0.3 2.6 1 0 0 1 1 1 1 Hpt domain GAF_2 PF13185.1 gi|116753699|ref|YP_842817.1| - 8e-13 49.1 0.1 2.1e-06 28.2 0.0 3.4 3 0 0 3 3 3 2 GAF domain PAS_7 PF12860.2 gi|116753699|ref|YP_842817.1| - 8e-10 38.7 0.1 0.014 15.3 0.0 5.7 4 2 0 4 4 4 2 PAS fold PAS_10 PF13596.1 gi|116753699|ref|YP_842817.1| - 0.00012 22.3 0.1 18 5.6 0.0 5.3 7 0 0 7 7 7 0 PAS domain Sugar-bind PF04198.8 gi|116753699|ref|YP_842817.1| - 0.082 11.7 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain GATase_3 PF07685.9 gi|116753700|ref|YP_842818.1| - 3.2e-40 137.3 0.1 4.7e-40 136.7 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|116753700|ref|YP_842818.1| - 3.1e-28 98.5 0.0 5.6e-28 97.6 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|116753700|ref|YP_842818.1| - 9.4e-20 71.0 0.0 2.7e-19 69.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain GATase PF00117.23 gi|116753700|ref|YP_842818.1| - 0.00011 21.6 0.3 0.0003 20.2 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|116753700|ref|YP_842818.1| - 0.00021 20.9 0.0 0.00039 20.1 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family MobB PF03205.9 gi|116753700|ref|YP_842818.1| - 0.00041 20.0 0.8 0.0043 16.7 0.0 2.5 2 1 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B MoeA_N PF03453.12 gi|116753701|ref|YP_842819.1| - 4.2e-37 127.0 0.0 4.6e-36 123.6 0.0 2.2 1 1 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|116753701|ref|YP_842819.1| - 1.7e-29 102.0 0.0 2.9e-29 101.3 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|116753701|ref|YP_842819.1| - 2.7e-17 62.4 0.1 6e-16 58.1 0.0 3.0 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) DUF3045 PF11243.3 gi|116753702|ref|YP_842820.1| - 0.00013 22.1 3.5 2 8.7 0.1 3.4 1 1 2 3 3 3 2 Protein of unknown function (DUF3045) PC4 PF02229.11 gi|116753702|ref|YP_842820.1| - 0.036 13.2 3.6 90 2.4 0.0 4.9 3 3 4 7 7 7 0 Transcriptional Coactivator p15 (PC4) Gal4_dimer PF03902.8 gi|116753702|ref|YP_842820.1| - 0.043 13.7 0.0 11 6.0 0.0 3.1 3 0 0 3 3 3 0 Gal4-like dimerisation domain VirB8 PF04335.8 gi|116753702|ref|YP_842820.1| - 0.6 9.6 11.4 2.1 7.8 1.1 2.8 1 1 1 2 2 2 0 VirB8 protein Methyltrn_RNA_4 PF09936.4 gi|116753702|ref|YP_842820.1| - 2.1 7.8 6.7 34 3.8 0.2 3.1 1 1 2 3 3 3 0 SAM-dependent RNA methyltransferase DUF3924 PF13062.1 gi|116753702|ref|YP_842820.1| - 2.6 8.0 14.0 43 4.0 0.2 4.4 4 0 0 4 4 4 0 Protein of unknown function (DUF3924) YARHG PF13308.1 gi|116753702|ref|YP_842820.1| - 6.3 6.4 10.4 56 3.3 0.3 4.6 1 1 2 3 3 3 0 YARHG domain HTH_34 PF13601.1 gi|116753703|ref|YP_842821.1| - 0.015 15.2 0.0 0.032 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Gal4_dimer PF03902.8 gi|116753703|ref|YP_842821.1| - 0.037 13.9 0.3 10 6.1 0.1 2.4 2 0 0 2 2 2 0 Gal4-like dimerisation domain DUF3783 PF12646.2 gi|116753703|ref|YP_842821.1| - 0.046 13.4 0.1 3.5 7.4 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3783) Terpene_synth PF01397.16 gi|116753703|ref|YP_842821.1| - 0.093 12.1 0.1 1.2 8.4 0.0 2.0 2 0 0 2 2 2 0 Terpene synthase, N-terminal domain OGG_N PF07934.7 gi|116753703|ref|YP_842821.1| - 0.12 12.2 0.1 4.9 7.1 0.0 2.1 2 0 0 2 2 2 0 8-oxoguanine DNA glycosylase, N-terminal domain DUF87 PF01935.12 gi|116753704|ref|YP_842822.1| - 1.2e-36 126.6 0.0 1.9e-36 126.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|116753704|ref|YP_842822.1| - 8e-26 91.1 0.0 1.2e-25 90.6 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|116753704|ref|YP_842822.1| - 4.5e-07 29.6 0.1 1.2e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 HAS barrel domain DUF853 PF05872.7 gi|116753704|ref|YP_842822.1| - 6.2e-07 28.1 0.0 0.01 14.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|116753704|ref|YP_842822.1| - 3.9e-06 25.7 0.0 0.0017 17.0 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|116753704|ref|YP_842822.1| - 4.4e-05 23.0 0.0 0.0032 16.9 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|116753704|ref|YP_842822.1| - 0.00025 20.5 0.4 0.024 14.1 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family TraG-D_C PF12696.2 gi|116753704|ref|YP_842822.1| - 0.011 15.5 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.9 gi|116753704|ref|YP_842822.1| - 0.042 12.4 0.0 0.12 10.9 0.0 1.7 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer DEAD PF00270.24 gi|116753704|ref|YP_842822.1| - 0.1 12.0 0.0 1.1 8.6 0.0 2.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase ResIII PF04851.10 gi|116753704|ref|YP_842822.1| - 0.17 11.6 0.0 0.4 10.4 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Acetyltransf_1 PF00583.19 gi|116753707|ref|YP_842825.1| - 4.3e-17 61.9 0.2 5.7e-17 61.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|116753707|ref|YP_842825.1| - 2.6e-11 43.6 0.0 3.2e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|116753707|ref|YP_842825.1| - 5.4e-10 39.3 0.0 7.7e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|116753707|ref|YP_842825.1| - 5e-06 26.4 0.0 1.4e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|116753707|ref|YP_842825.1| - 8.3e-06 26.0 0.1 9.1e-05 22.6 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|116753707|ref|YP_842825.1| - 9e-06 25.3 0.0 1.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|116753707|ref|YP_842825.1| - 3.6e-05 23.7 0.0 4.5e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|116753707|ref|YP_842825.1| - 0.001 18.9 0.0 0.0054 16.5 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain LTD PF00932.14 gi|116753708|ref|YP_842826.1| - 1.9e-09 37.6 0.0 4.3e-09 36.4 0.0 1.5 1 1 0 1 1 1 1 Lamin Tail Domain Radical_SAM PF04055.16 gi|116753709|ref|YP_842827.1| - 6.6e-14 52.4 1.0 1.1e-12 48.3 0.1 2.1 1 1 1 2 2 2 2 Radical SAM superfamily Aldedh PF00171.17 gi|116753710|ref|YP_842828.1| - 2.1e-172 573.6 0.0 2.4e-172 573.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|116753710|ref|YP_842828.1| - 0.00093 18.4 0.1 0.008 15.4 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF1487) TrkA_N PF02254.13 gi|116753711|ref|YP_842829.1| - 9e-42 141.7 1.9 6.3e-23 80.9 0.2 2.3 2 0 0 2 2 2 2 TrkA-N domain Ion_trans_2 PF07885.11 gi|116753711|ref|YP_842829.1| - 5.3e-14 51.6 11.5 6.6e-14 51.3 6.4 2.2 2 0 0 2 2 2 1 Ion channel TrkA_C PF02080.16 gi|116753711|ref|YP_842829.1| - 3.5e-08 32.9 0.0 1e-07 31.3 0.0 1.9 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_2 PF03446.10 gi|116753711|ref|YP_842829.1| - 1.3e-06 28.3 0.1 0.0002 21.2 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.1 gi|116753711|ref|YP_842829.1| - 2.1e-06 28.0 0.3 0.0078 16.5 0.0 2.3 2 0 0 2 2 2 2 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|116753711|ref|YP_842829.1| - 6.6e-05 23.1 0.3 0.0032 17.6 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding IlvN PF07991.7 gi|116753711|ref|YP_842829.1| - 0.00062 19.1 0.1 0.018 14.4 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain Ion_trans PF00520.26 gi|116753711|ref|YP_842829.1| - 0.0018 17.5 4.3 0.0038 16.5 3.0 1.5 1 0 0 1 1 1 1 Ion transport protein 2-Hacid_dh_C PF02826.14 gi|116753711|ref|YP_842829.1| - 0.0034 16.5 0.0 0.096 11.8 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|116753711|ref|YP_842829.1| - 0.004 17.5 0.0 5.7 7.4 0.0 3.0 2 1 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent CPSase_L_chain PF00289.17 gi|116753711|ref|YP_842829.1| - 0.0056 16.7 0.1 2.9 8.0 0.0 3.1 2 1 0 3 3 3 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Shikimate_DH PF01488.15 gi|116753711|ref|YP_842829.1| - 0.0059 16.7 0.0 0.13 12.3 0.0 2.3 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|116753711|ref|YP_842829.1| - 0.026 13.5 0.0 0.087 11.8 0.0 1.8 2 0 0 2 2 2 0 FAD binding domain TrkA_C PF02080.16 gi|116753712|ref|YP_842830.1| - 1.2e-15 56.8 0.1 1.5e-15 56.4 0.1 1.2 1 0 0 1 1 1 1 TrkA-C domain TruD PF01142.13 gi|116753713|ref|YP_842831.1| - 5.2e-118 393.9 0.0 5.8e-118 393.8 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) MFS_1 PF07690.11 gi|116753714|ref|YP_842832.1| - 3e-40 138.0 38.5 3e-40 138.0 26.7 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|116753714|ref|YP_842832.1| - 1.9e-11 43.2 5.6 1.9e-11 43.2 3.9 2.4 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|116753714|ref|YP_842832.1| - 5.4e-10 38.2 31.8 4.8e-07 28.5 1.3 3.2 1 1 1 3 3 3 3 MFS/sugar transport protein DUF2499 PF10693.4 gi|116753714|ref|YP_842832.1| - 0.009 16.0 1.6 0.025 14.5 0.1 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2499) DBI_PRT PF02277.12 gi|116753715|ref|YP_842833.1| - 8.8e-16 57.8 0.0 1.4e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase HAD_2 PF13419.1 gi|116753715|ref|YP_842833.1| - 0.015 15.4 0.0 0.032 14.4 0.0 1.5 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF11 PF01345.13 gi|116753716|ref|YP_842834.1| - 1.9e-28 98.2 5.7 3.1e-06 27.1 0.2 7.2 7 0 0 7 7 7 6 Domain of unknown function DUF11 CARDB PF07705.6 gi|116753716|ref|YP_842834.1| - 1.3e-12 47.5 6.6 0.47 10.5 0.0 8.3 8 0 0 8 8 8 4 CARDB NPCBM_assoc PF10633.4 gi|116753716|ref|YP_842834.1| - 0.00033 20.6 0.4 15 5.7 0.0 6.4 6 1 0 6 6 6 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Transglut_C PF00927.17 gi|116753716|ref|YP_842834.1| - 0.0044 17.0 0.4 17 5.5 0.0 4.9 4 1 0 4 4 4 1 Transglutaminase family, C-terminal ig like domain TPP_enzyme_C PF02775.16 gi|116753717|ref|YP_842835.1| - 3.3e-07 30.0 0.1 8e-07 28.7 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|116753717|ref|YP_842835.1| - 0.00062 19.2 0.2 0.0048 16.4 0.1 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF1743 PF08489.6 gi|116753718|ref|YP_842836.1| - 1.1e-24 86.3 0.0 5.1e-24 84.2 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF1743) TrmB PF01978.14 gi|116753719|ref|YP_842837.1| - 9.7e-05 21.9 0.2 0.0024 17.5 0.1 2.3 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|116753719|ref|YP_842837.1| - 0.00014 21.4 0.1 0.00051 19.6 0.0 1.9 1 1 1 2 2 2 1 MarR family DUF387 PF04079.11 gi|116753719|ref|YP_842837.1| - 0.0044 16.4 0.2 0.0073 15.6 0.1 1.5 1 1 1 2 2 2 1 Putative transcriptional regulators (Ypuh-like) PadR PF03551.9 gi|116753719|ref|YP_842837.1| - 0.019 14.7 0.1 0.033 13.9 0.0 1.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|116753719|ref|YP_842837.1| - 0.025 14.9 0.2 0.052 13.8 0.1 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|116753719|ref|YP_842837.1| - 0.057 13.4 0.0 0.095 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|116753719|ref|YP_842837.1| - 0.065 12.9 0.0 0.28 10.8 0.0 2.1 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|116753719|ref|YP_842837.1| - 0.075 12.6 0.0 2.1 7.9 0.0 2.3 1 1 1 2 2 2 0 IclR helix-turn-helix domain PBP_like_2 PF12849.2 gi|116753720|ref|YP_842838.1| - 1.8e-41 142.4 0.2 4.3e-41 141.2 0.1 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|116753720|ref|YP_842838.1| - 2e-20 72.5 0.0 2.6e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|116753720|ref|YP_842838.1| - 0.0085 15.7 0.1 0.047 13.3 0.0 2.0 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein AP_endonuc_2 PF01261.19 gi|116753721|ref|YP_842839.1| - 1.3e-33 116.0 0.0 1.6e-33 115.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Response_reg PF00072.19 gi|116753722|ref|YP_842840.1| - 4.5e-21 74.9 0.1 5.2e-21 74.7 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain H_lectin PF09458.5 gi|116753722|ref|YP_842840.1| - 0.087 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 H-type lectin domain Wyosine_form PF08608.7 gi|116753723|ref|YP_842841.1| - 2e-22 79.0 0.0 4e-22 78.0 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|116753723|ref|YP_842841.1| - 5.9e-22 78.6 0.0 1.8e-21 77.0 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily HAD_2 PF13419.1 gi|116753723|ref|YP_842841.1| - 0.039 14.1 0.0 0.088 13.0 0.0 1.6 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Fer4_12 PF13353.1 gi|116753723|ref|YP_842841.1| - 0.048 13.7 0.0 0.14 12.2 0.0 1.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain Malic_M PF03949.10 gi|116753724|ref|YP_842842.1| - 7.5e-69 232.1 0.3 9.3e-69 231.8 0.2 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|116753724|ref|YP_842842.1| - 8.2e-31 106.9 0.1 3.2e-28 98.5 0.1 2.3 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain ELFV_dehydrog PF00208.16 gi|116753724|ref|YP_842842.1| - 0.0005 19.7 0.0 0.00082 19.0 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ThiF PF00899.16 gi|116753724|ref|YP_842842.1| - 0.0051 16.6 0.5 0.013 15.2 0.3 1.7 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.15 gi|116753724|ref|YP_842842.1| - 0.021 14.9 0.2 0.11 12.6 0.0 2.3 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Pyr_redox_3 PF13738.1 gi|116753724|ref|YP_842842.1| - 0.033 14.2 0.1 0.076 13.0 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Gate PF07670.9 gi|116753725|ref|YP_842843.1| - 4.6e-05 23.2 24.8 0.0025 17.7 4.7 3.2 1 1 2 3 3 3 2 Nucleoside recognition PSI_PsaJ PF01701.13 gi|116753725|ref|YP_842843.1| - 1.3 8.8 5.9 0.26 11.0 0.5 2.6 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ Pribosyltran_N PF13793.1 gi|116753726|ref|YP_842844.1| - 1e-23 83.2 0.0 9.7e-19 67.2 0.0 2.4 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|116753726|ref|YP_842844.1| - 2.2e-18 66.1 0.1 5e-18 65.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|116753726|ref|YP_842844.1| - 2.6e-07 30.5 0.6 8.7e-07 28.8 0.2 1.9 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|116753726|ref|YP_842844.1| - 6.2e-07 28.8 0.1 1.1e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF1995 PF09353.5 gi|116753726|ref|YP_842844.1| - 0.00047 19.8 0.0 0.002 17.8 0.0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF1995) PRTase_2 PF15609.1 gi|116753726|ref|YP_842844.1| - 0.032 13.5 0.1 0.082 12.1 0.0 1.6 1 1 0 1 1 1 0 Phosphoribosyl transferase PmbA_TldD PF01523.11 gi|116753727|ref|YP_842845.1| - 2.3e-68 230.6 0.3 3e-68 230.2 0.2 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PAC2 PF09754.4 gi|116753728|ref|YP_842846.1| - 7e-56 189.5 0.1 8.7e-56 189.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.7 gi|116753729|ref|YP_842847.1| - 2.7e-24 84.6 1.6 3e-24 84.4 1.1 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.10 gi|116753729|ref|YP_842847.1| - 0.0019 17.5 1.0 0.0025 17.1 0.7 1.2 1 0 0 1 1 1 1 RecR protein NOB1_Zn_bind PF08772.6 gi|116753729|ref|YP_842847.1| - 0.01 15.6 0.7 0.012 15.3 0.5 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like PolC_DP2 PF03833.8 gi|116753729|ref|YP_842847.1| - 0.015 13.0 0.2 0.015 13.0 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-FPG_IleRS PF06827.9 gi|116753729|ref|YP_842847.1| - 0.034 13.7 7.2 0.16 11.6 0.4 2.3 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS DUF1272 PF06906.6 gi|116753729|ref|YP_842847.1| - 0.051 13.4 1.2 0.061 13.1 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.1 gi|116753729|ref|YP_842847.1| - 0.28 10.4 0.1 0.28 10.4 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|116753729|ref|YP_842847.1| - 0.88 9.1 4.3 1 8.9 0.6 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-NADH-PPase PF09297.6 gi|116753729|ref|YP_842847.1| - 4.9 6.7 6.6 11 5.6 2.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|116753729|ref|YP_842847.1| - 6.4 6.6 8.5 1.1 9.0 0.8 2.2 1 1 0 2 2 2 0 Transposase zinc-ribbon domain EIF_2_alpha PF07541.7 gi|116753730|ref|YP_842848.1| - 2.4e-29 101.3 0.2 4.2e-29 100.5 0.2 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|116753730|ref|YP_842848.1| - 1.8e-12 47.1 0.8 2e-11 43.8 0.1 2.2 2 0 0 2 2 2 1 S1 RNA binding domain Ribosomal_S27e PF01667.12 gi|116753731|ref|YP_842849.1| - 5.2e-26 89.9 0.5 5.5e-26 89.8 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zinc_ribbon_6 PF14599.1 gi|116753731|ref|YP_842849.1| - 0.049 13.4 0.8 0.075 12.8 0.6 1.3 1 0 0 1 1 1 0 Zinc-ribbon Sgf11 PF08209.6 gi|116753731|ref|YP_842849.1| - 0.073 12.3 2.8 0.25 10.6 0.0 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) OrfB_Zn_ribbon PF07282.6 gi|116753731|ref|YP_842849.1| - 0.076 12.6 0.1 0.085 12.5 0.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain IBR PF01485.16 gi|116753731|ref|YP_842849.1| - 0.093 12.6 0.2 0.1 12.4 0.1 1.1 1 0 0 1 1 1 0 IBR domain Zn-ribbon_8 PF09723.5 gi|116753731|ref|YP_842849.1| - 0.096 12.6 0.5 0.15 12.0 0.4 1.2 1 0 0 1 1 1 0 Zinc ribbon domain DUF1922 PF09082.5 gi|116753731|ref|YP_842849.1| - 0.097 12.7 0.6 0.1 12.6 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) C1_1 PF00130.17 gi|116753731|ref|YP_842849.1| - 0.13 12.0 0.4 0.18 11.5 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-BED PF02892.10 gi|116753731|ref|YP_842849.1| - 0.14 11.9 2.1 1.4 8.7 0.0 2.1 1 1 1 2 2 2 0 BED zinc finger zf-RanBP PF00641.13 gi|116753731|ref|YP_842849.1| - 0.3 10.2 2.7 5.9 6.0 0.2 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others ZZ PF00569.12 gi|116753731|ref|YP_842849.1| - 1.1 8.8 3.6 4.8 6.8 2.6 1.8 1 1 1 2 2 2 0 Zinc finger, ZZ type Ribosomal_L44 PF00935.14 gi|116753732|ref|YP_842850.1| - 9.5e-28 96.0 6.6 1.3e-27 95.6 4.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 Zn_Tnp_IS1 PF03811.8 gi|116753732|ref|YP_842850.1| - 0.0036 16.7 5.2 0.42 10.1 0.1 2.5 2 0 0 2 2 2 2 InsA N-terminal domain zf-Di19 PF05605.7 gi|116753732|ref|YP_842850.1| - 0.022 14.8 0.5 0.48 10.5 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF2225 PF09986.4 gi|116753732|ref|YP_842850.1| - 0.053 12.9 1.2 2 7.8 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-met PF12874.2 gi|116753732|ref|YP_842850.1| - 0.054 13.7 1.9 2.5 8.4 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of C2H2 type Ribosomal_L33 PF00471.15 gi|116753732|ref|YP_842850.1| - 0.16 12.2 1.7 0.16 12.2 1.2 2.1 2 0 0 2 2 2 0 Ribosomal protein L33 Zn_Tnp_IS1595 PF12760.2 gi|116753732|ref|YP_842850.1| - 0.17 11.7 1.6 4.9 7.0 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|116753732|ref|YP_842850.1| - 0.2 11.2 1.0 16 5.1 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-C4_ClpX PF06689.8 gi|116753732|ref|YP_842850.1| - 0.44 10.0 1.9 15 5.1 0.1 2.2 2 0 0 2 2 2 0 ClpX C4-type zinc finger Zn-ribbon_8 PF09723.5 gi|116753732|ref|YP_842850.1| - 0.51 10.3 3.6 2 8.4 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|116753732|ref|YP_842850.1| - 1.3 9.4 8.8 6.4 7.2 0.1 2.6 2 1 0 2 2 2 0 Zinc-finger double domain Ribosomal_L34e PF01199.13 gi|116753732|ref|YP_842850.1| - 3.5 7.9 8.3 2.4 8.4 1.0 2.1 1 1 1 2 2 2 0 Ribosomal protein L34e Sld5 PF05916.6 gi|116753733|ref|YP_842851.1| - 0.00053 20.2 0.8 0.0018 18.5 0.1 2.2 2 1 0 2 2 2 1 GINS complex protein HAUS-augmin3 PF14932.1 gi|116753733|ref|YP_842851.1| - 0.087 11.9 1.0 0.11 11.6 0.7 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DNA_primase_S PF01896.14 gi|116753734|ref|YP_842852.1| - 3.4e-22 78.7 0.0 7e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit CN_hydrolase PF00795.17 gi|116753735|ref|YP_842853.1| - 3.8e-17 62.2 0.0 8.4e-17 61.1 0.0 1.6 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase Radical_SAM PF04055.16 gi|116753736|ref|YP_842854.1| - 1.4e-17 64.3 0.3 2.6e-17 63.5 0.2 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|116753736|ref|YP_842854.1| - 1.2e-05 25.3 0.0 3.5e-05 23.9 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|116753736|ref|YP_842854.1| - 3.7e-05 23.7 0.3 8.8e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3784 PF12650.2 gi|116753739|ref|YP_842857.1| - 0.0012 18.6 1.3 0.0012 18.6 0.9 3.3 3 1 1 4 4 4 1 Domain of unknown function (DUF3784) DUF2975 PF11188.3 gi|116753739|ref|YP_842857.1| - 0.5 10.0 13.6 0.96 9.1 2.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) Pox_A14 PF05767.7 gi|116753739|ref|YP_842857.1| - 7.2 6.6 8.0 1.6 8.7 1.9 2.4 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 Tubulin PF00091.20 gi|116753740|ref|YP_842858.1| - 2.8e-06 27.3 2.4 3.9e-05 23.5 0.0 3.1 3 1 0 3 3 3 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|116753740|ref|YP_842858.1| - 0.23 10.3 0.0 0.23 10.3 0.0 2.2 3 0 0 3 3 3 0 Tubulin like DUF4352 PF11611.3 gi|116753741|ref|YP_842859.1| - 2.9e-05 24.2 0.0 0.00031 20.8 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4352) Cbl_N3 PF02762.9 gi|116753741|ref|YP_842859.1| - 0.042 13.4 0.0 0.084 12.5 0.0 1.5 1 0 0 1 1 1 0 CBL proto-oncogene N-terminus, SH2-like domain Peripla_BP_2 PF01497.13 gi|116753742|ref|YP_842860.1| - 8.9e-35 119.9 0.0 3.4e-34 118.0 0.0 2.0 2 1 0 2 2 2 1 Periplasmic binding protein Methyltransf_31 PF13847.1 gi|116753743|ref|YP_842861.1| - 2.6e-13 49.8 0.0 3e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116753743|ref|YP_842861.1| - 6.2e-13 49.3 0.0 1.1e-12 48.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|116753743|ref|YP_842861.1| - 1e-08 35.5 0.0 2.1e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|116753743|ref|YP_842861.1| - 1.1e-08 34.3 0.0 1.6e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|116753743|ref|YP_842861.1| - 1.7e-07 30.9 0.0 2.3e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|116753743|ref|YP_842861.1| - 1.9e-07 30.6 0.0 2.9e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|116753743|ref|YP_842861.1| - 9.8e-07 29.1 0.0 2.6e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116753743|ref|YP_842861.1| - 1.6e-06 28.3 0.0 5.6e-06 26.6 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|116753743|ref|YP_842861.1| - 4.6e-06 25.9 0.0 6.8e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|116753743|ref|YP_842861.1| - 6.4e-06 25.9 0.0 9.5e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|116753743|ref|YP_842861.1| - 1.9e-05 24.3 0.0 2.7e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.4 gi|116753743|ref|YP_842861.1| - 3.5e-05 23.3 0.0 5.2e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase PrmA PF06325.8 gi|116753743|ref|YP_842861.1| - 8.8e-05 21.7 0.0 0.00013 21.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|116753743|ref|YP_842861.1| - 0.00017 21.1 0.0 0.00025 20.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase GidB PF02527.10 gi|116753743|ref|YP_842861.1| - 0.00029 20.0 0.0 0.00046 19.3 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.15 gi|116753743|ref|YP_842861.1| - 0.00034 19.8 0.0 0.00047 19.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|116753743|ref|YP_842861.1| - 0.0008 18.5 0.0 0.0013 17.8 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Cons_hypoth95 PF03602.10 gi|116753743|ref|YP_842861.1| - 0.001 18.5 0.0 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 TehB PF03848.9 gi|116753743|ref|YP_842861.1| - 0.0015 17.6 0.0 0.0022 17.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_26 PF13659.1 gi|116753743|ref|YP_842861.1| - 0.0039 17.2 0.0 0.0065 16.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|116753743|ref|YP_842861.1| - 0.017 13.9 0.0 0.026 13.3 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase Nol1_Nop2_Fmu PF01189.12 gi|116753743|ref|YP_842861.1| - 0.023 14.0 0.0 0.032 13.6 0.0 1.2 1 0 0 1 1 1 0 NOL1/NOP2/sun family DUF938 PF06080.7 gi|116753743|ref|YP_842861.1| - 0.035 13.6 0.0 0.077 12.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF938) tRNA_U5-meth_tr PF05958.6 gi|116753743|ref|YP_842861.1| - 0.093 11.4 0.0 0.18 10.4 0.0 1.4 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Band_7 PF01145.20 gi|116753744|ref|YP_842862.1| - 7e-36 123.7 1.0 8.9e-36 123.4 0.7 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family FecCD PF01032.13 gi|116753745|ref|YP_842863.1| - 2.5e-88 295.8 34.6 3.2e-88 295.5 23.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|116753745|ref|YP_842863.1| - 0.041 13.1 21.4 0.067 12.4 14.9 1.4 1 0 0 1 1 1 0 ABC 3 transport family Cortexin PF11057.3 gi|116753745|ref|YP_842863.1| - 0.071 12.7 1.0 0.44 10.1 0.0 2.4 2 1 0 2 2 2 0 Cortexin of kidney ABC_tran PF00005.22 gi|116753746|ref|YP_842864.1| - 2e-34 118.8 0.0 2.7e-34 118.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116753746|ref|YP_842864.1| - 1.8e-11 44.5 0.2 6.2e-06 26.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|116753746|ref|YP_842864.1| - 1.2e-07 31.1 0.4 1.3e-06 27.8 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|116753746|ref|YP_842864.1| - 2.2e-07 31.3 0.0 2.7e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|116753746|ref|YP_842864.1| - 1.6e-06 27.5 0.0 3.3e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|116753746|ref|YP_842864.1| - 6.8e-06 25.3 0.3 0.0022 17.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain ABC_ATPase PF09818.4 gi|116753746|ref|YP_842864.1| - 4.8e-05 22.1 0.9 0.44 9.0 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|116753746|ref|YP_842864.1| - 0.00022 21.2 0.1 0.00036 20.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|116753746|ref|YP_842864.1| - 0.00043 20.4 0.4 0.1 12.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain RNA12 PF10443.4 gi|116753746|ref|YP_842864.1| - 0.00048 18.7 0.0 0.00087 17.8 0.0 1.4 1 0 0 1 1 1 1 RNA12 protein AAA_10 PF12846.2 gi|116753746|ref|YP_842864.1| - 0.0014 18.0 0.0 0.0017 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|116753746|ref|YP_842864.1| - 0.0028 16.8 0.0 0.0039 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MobB PF03205.9 gi|116753746|ref|YP_842864.1| - 0.0055 16.4 0.1 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MutS_V PF00488.16 gi|116753746|ref|YP_842864.1| - 0.0062 15.9 0.0 0.014 14.8 0.0 1.5 2 0 0 2 2 2 1 MutS domain V AAA_33 PF13671.1 gi|116753746|ref|YP_842864.1| - 0.0067 16.2 0.0 0.014 15.2 0.0 1.6 2 0 0 2 2 1 1 AAA domain Mg_chelatase PF01078.16 gi|116753746|ref|YP_842864.1| - 0.0079 15.3 0.0 0.016 14.4 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|116753746|ref|YP_842864.1| - 0.0081 15.8 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_5 PF07728.9 gi|116753746|ref|YP_842864.1| - 0.02 14.6 0.1 1.3 8.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|116753746|ref|YP_842864.1| - 0.02 14.0 0.0 0.031 13.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.17 gi|116753746|ref|YP_842864.1| - 0.021 13.6 0.2 0.069 12.0 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_13 PF13166.1 gi|116753746|ref|YP_842864.1| - 0.026 13.0 0.1 0.15 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|116753746|ref|YP_842864.1| - 0.033 13.5 0.0 0.12 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|116753746|ref|YP_842864.1| - 0.034 14.0 0.1 0.2 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|116753746|ref|YP_842864.1| - 0.034 13.8 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|116753746|ref|YP_842864.1| - 0.046 14.5 1.0 0.1 13.4 0.7 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|116753746|ref|YP_842864.1| - 0.049 13.2 0.2 0.1 12.2 0.2 1.8 1 1 0 1 1 1 0 NACHT domain Viral_helicase1 PF01443.13 gi|116753746|ref|YP_842864.1| - 0.055 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.10 gi|116753746|ref|YP_842864.1| - 0.081 11.5 0.1 0.23 10.0 0.0 1.6 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein MMR_HSR1 PF01926.18 gi|116753746|ref|YP_842864.1| - 0.11 12.4 0.2 0.17 11.8 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|116753746|ref|YP_842864.1| - 0.12 12.6 0.0 0.4 10.8 0.0 1.9 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.8 gi|116753746|ref|YP_842864.1| - 0.12 11.3 0.0 0.37 9.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_30 PF13604.1 gi|116753746|ref|YP_842864.1| - 0.13 11.7 0.0 0.35 10.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|116753746|ref|YP_842864.1| - 0.14 12.0 0.1 1.4 8.8 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Radical_SAM PF04055.16 gi|116753747|ref|YP_842865.1| - 7.3e-14 52.2 0.0 1.5e-13 51.2 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|116753747|ref|YP_842865.1| - 2.5e-08 33.9 0.0 8e-08 32.3 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|116753747|ref|YP_842865.1| - 3.1e-07 30.5 0.0 5.3e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|116753747|ref|YP_842865.1| - 3.5e-07 30.4 0.2 6.5e-07 29.5 0.1 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain CobN-Mg_chel PF02514.11 gi|116753748|ref|YP_842866.1| - 0 1343.0 0.0 0 1342.7 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase Peripla_BP_2 PF01497.13 gi|116753749|ref|YP_842867.1| - 7.9e-24 84.0 0.0 1.4e-23 83.2 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein DUF3855 PF12967.2 gi|116753749|ref|YP_842867.1| - 0.12 11.8 0.0 0.55 9.7 0.0 2.0 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3855) PTPS PF01242.14 gi|116753751|ref|YP_842869.1| - 6.9e-34 116.1 0.1 7.4e-34 116.0 0.1 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase QueC PF06508.8 gi|116753752|ref|YP_842870.1| - 3.4e-60 202.9 0.0 3.8e-60 202.7 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|116753752|ref|YP_842870.1| - 1.5e-10 40.8 0.0 2.1e-08 33.8 0.0 2.3 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|116753752|ref|YP_842870.1| - 1.7e-06 27.7 0.0 6.9e-06 25.7 0.0 1.8 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|116753752|ref|YP_842870.1| - 0.005 15.4 0.0 0.0057 15.2 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|116753752|ref|YP_842870.1| - 0.024 14.1 0.0 0.071 12.6 0.0 1.7 2 0 0 2 2 2 0 PP-loop family NAD_synthase PF02540.12 gi|116753752|ref|YP_842870.1| - 0.17 10.7 0.1 0.36 9.6 0.0 1.6 2 0 0 2 2 2 0 NAD synthase Radial_spoke_3 PF06098.6 gi|116753753|ref|YP_842871.1| - 0.072 12.0 2.0 0.09 11.7 1.4 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 CobN-Mg_chel PF02514.11 gi|116753754|ref|YP_842872.1| - 0 1214.5 0.0 0 1207.3 0.0 2.0 1 1 0 1 1 1 1 CobN/Magnesium Chelatase Phage_P2_GpE PF06528.7 gi|116753754|ref|YP_842872.1| - 0.019 14.4 0.0 0.08 12.4 0.0 2.1 1 0 0 1 1 1 0 Phage P2 GpE DUF3479 PF11965.3 gi|116753754|ref|YP_842872.1| - 0.034 13.9 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) PNP_UDP_1 PF01048.15 gi|116753754|ref|YP_842872.1| - 0.17 10.8 0.0 0.43 9.4 0.0 1.6 1 0 0 1 1 1 0 Phosphorylase superfamily ABC_tran PF00005.22 gi|116753755|ref|YP_842873.1| - 1.4e-31 109.5 0.0 2.1e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116753755|ref|YP_842873.1| - 9.4e-13 48.7 0.3 6e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|116753755|ref|YP_842873.1| - 5.2e-07 29.1 0.9 1.6e-05 24.2 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|116753755|ref|YP_842873.1| - 7.3e-07 28.5 0.3 0.013 14.5 0.2 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|116753755|ref|YP_842873.1| - 9.6e-05 22.4 0.1 0.00018 21.5 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|116753755|ref|YP_842873.1| - 0.00016 22.0 0.1 0.00024 21.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|116753755|ref|YP_842873.1| - 0.00021 21.1 0.1 0.0028 17.5 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|116753755|ref|YP_842873.1| - 0.00031 20.8 1.9 0.012 15.7 1.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|116753755|ref|YP_842873.1| - 0.00058 19.3 0.1 0.0012 18.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|116753755|ref|YP_842873.1| - 0.0008 19.6 0.0 0.0062 16.7 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|116753755|ref|YP_842873.1| - 0.0013 18.4 0.0 0.0027 17.4 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|116753755|ref|YP_842873.1| - 0.0017 17.5 0.1 0.035 13.2 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|116753755|ref|YP_842873.1| - 0.0026 17.4 0.1 0.008 15.9 0.0 1.9 2 0 0 2 2 1 1 Part of AAA domain ArgK PF03308.11 gi|116753755|ref|YP_842873.1| - 0.0045 15.8 0.0 0.0076 15.0 0.0 1.3 1 0 0 1 1 1 1 ArgK protein NB-ARC PF00931.17 gi|116753755|ref|YP_842873.1| - 0.0066 15.3 1.3 0.017 13.9 0.0 1.9 2 0 0 2 2 2 1 NB-ARC domain AAA_14 PF13173.1 gi|116753755|ref|YP_842873.1| - 0.0074 16.1 0.0 0.56 10.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|116753755|ref|YP_842873.1| - 0.0075 17.0 0.1 0.38 11.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|116753755|ref|YP_842873.1| - 0.012 15.4 0.0 0.026 14.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|116753755|ref|YP_842873.1| - 0.025 13.0 0.0 1.5 7.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|116753755|ref|YP_842873.1| - 0.032 13.8 0.5 0.29 10.7 0.0 2.2 2 0 0 2 2 2 0 NACHT domain ABC_ATPase PF09818.4 gi|116753755|ref|YP_842873.1| - 0.041 12.4 0.2 3.6 6.0 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NTPase_1 PF03266.10 gi|116753755|ref|YP_842873.1| - 0.07 12.8 0.4 0.45 10.2 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.9 gi|116753755|ref|YP_842873.1| - 0.099 12.3 0.1 0.69 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.14 gi|116753755|ref|YP_842873.1| - 0.11 11.9 0.1 0.21 10.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|116753755|ref|YP_842873.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MutS_V PF00488.16 gi|116753755|ref|YP_842873.1| - 0.11 11.8 0.1 0.29 10.5 0.0 1.7 2 0 0 2 2 2 0 MutS domain V DUF258 PF03193.11 gi|116753755|ref|YP_842873.1| - 0.11 11.6 0.1 0.15 11.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|116753755|ref|YP_842873.1| - 0.16 11.0 0.2 0.49 9.4 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin FecCD PF01032.13 gi|116753756|ref|YP_842874.1| - 1.3e-95 319.8 35.3 1.5e-95 319.5 24.5 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|116753757|ref|YP_842875.1| - 6.3e-27 94.2 0.2 3.6e-26 91.7 0.1 1.9 1 1 0 1 1 1 1 Periplasmic binding protein DUF4375 PF14300.1 gi|116753758|ref|YP_842876.1| - 0.11 12.4 0.1 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4375) ABC_tran PF00005.22 gi|116753759|ref|YP_842877.1| - 1.4e-29 103.1 0.0 1.9e-29 102.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116753759|ref|YP_842877.1| - 8.7e-14 52.1 0.0 1.7e-06 28.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|116753759|ref|YP_842877.1| - 1.4e-06 27.6 0.1 0.0042 16.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_14 PF13173.1 gi|116753759|ref|YP_842877.1| - 3.2e-05 23.8 0.0 0.00065 19.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|116753759|ref|YP_842877.1| - 8.6e-05 22.3 0.0 0.00012 21.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|116753759|ref|YP_842877.1| - 0.00013 22.1 0.0 0.0025 18.0 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|116753759|ref|YP_842877.1| - 0.00021 20.4 0.0 0.0004 19.6 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|116753759|ref|YP_842877.1| - 0.0008 18.5 0.0 0.22 10.5 0.0 2.5 3 0 0 3 3 3 1 AAA ATPase domain AAA_29 PF13555.1 gi|116753759|ref|YP_842877.1| - 0.00088 18.7 0.1 0.0029 17.0 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|116753759|ref|YP_842877.1| - 0.0013 18.8 0.0 0.053 13.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|116753759|ref|YP_842877.1| - 0.0025 17.5 0.0 0.0074 16.0 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain AAA_23 PF13476.1 gi|116753759|ref|YP_842877.1| - 0.0038 17.5 0.0 0.0059 16.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|116753759|ref|YP_842877.1| - 0.0081 15.8 0.0 0.08 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|116753759|ref|YP_842877.1| - 0.0082 16.1 0.1 0.033 14.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain PduV-EutP PF10662.4 gi|116753759|ref|YP_842877.1| - 0.011 15.1 0.0 0.069 12.6 0.0 2.2 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|116753759|ref|YP_842877.1| - 0.012 15.3 0.1 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|116753759|ref|YP_842877.1| - 0.012 15.5 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|116753759|ref|YP_842877.1| - 0.013 14.1 0.0 1.8 7.0 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PIF1 PF05970.9 gi|116753759|ref|YP_842877.1| - 0.013 14.4 0.0 0.47 9.3 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase UPF0079 PF02367.12 gi|116753759|ref|YP_842877.1| - 0.017 14.7 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Rad17 PF03215.10 gi|116753759|ref|YP_842877.1| - 0.026 13.2 0.1 0.038 12.6 0.1 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NB-ARC PF00931.17 gi|116753759|ref|YP_842877.1| - 0.04 12.7 0.0 0.093 11.5 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.1 gi|116753759|ref|YP_842877.1| - 0.05 13.5 0.0 0.59 10.0 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|116753759|ref|YP_842877.1| - 0.054 12.6 0.0 0.08 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF3802 PF12290.3 gi|116753759|ref|YP_842877.1| - 0.13 12.6 0.0 0.2 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3802) FecCD PF01032.13 gi|116753760|ref|YP_842878.1| - 1.7e-94 316.2 31.6 2e-94 315.9 21.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|116753760|ref|YP_842878.1| - 4.8e-06 26.0 16.4 4.8e-06 26.0 11.4 1.6 2 1 0 2 2 2 1 ABC 3 transport family Peripla_BP_2 PF01497.13 gi|116753761|ref|YP_842879.1| - 1.2e-23 83.4 0.4 1.8e-23 82.9 0.2 1.3 1 0 0 1 1 1 1 Periplasmic binding protein VWA_2 PF13519.1 gi|116753762|ref|YP_842880.1| - 3.1e-23 82.7 0.0 1.2e-22 80.8 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|116753762|ref|YP_842880.1| - 9.6e-13 48.2 0.0 4e-12 46.2 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|116753762|ref|YP_842880.1| - 4.6e-10 39.3 0.1 1.8e-06 27.7 0.0 2.7 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|116753762|ref|YP_842880.1| - 1.1e-07 31.2 0.0 1.1e-07 31.2 0.0 3.1 3 1 1 4 4 4 1 Magnesium chelatase, subunit ChlI VWA_CoxE PF05762.9 gi|116753762|ref|YP_842880.1| - 9.1e-06 24.9 4.8 2.2e-05 23.7 3.3 1.6 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein MCM PF00493.18 gi|116753762|ref|YP_842880.1| - 0.00018 20.4 1.3 0.00018 20.4 0.9 3.4 3 1 0 3 3 3 1 MCM2/3/5 family RuvB_N PF05496.7 gi|116753762|ref|YP_842880.1| - 0.0031 16.6 0.0 0.0067 15.4 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|116753762|ref|YP_842880.1| - 0.0031 16.9 0.0 0.22 11.0 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|116753762|ref|YP_842880.1| - 0.006 16.5 0.0 0.021 14.7 0.0 2.0 1 0 0 1 1 1 1 AAA ATPase domain Mg_chelatase_2 PF13335.1 gi|116753762|ref|YP_842880.1| - 0.0099 16.2 0.5 0.049 14.0 0.3 2.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|116753762|ref|YP_842880.1| - 0.011 15.9 0.0 0.23 11.6 0.0 3.2 4 1 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|116753762|ref|YP_842880.1| - 0.033 13.7 0.0 3.1 7.4 0.0 2.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Fer4_11 PF13247.1 gi|116753762|ref|YP_842880.1| - 0.11 12.4 0.1 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Peptidase_S49_N PF08496.5 gi|116753762|ref|YP_842880.1| - 0.23 11.2 2.6 2.8 7.6 1.0 2.3 2 0 0 2 2 2 0 Peptidase family S49 N-terminal SelP_N PF04592.9 gi|116753762|ref|YP_842880.1| - 3.1 7.0 9.3 5 6.4 6.5 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region Zip PF02535.17 gi|116753762|ref|YP_842880.1| - 8.5 5.2 8.8 14 4.5 6.1 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter DHO_dh PF01180.16 gi|116753763|ref|YP_842881.1| - 4.5e-60 203.1 0.3 5.1e-60 202.9 0.2 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|116753763|ref|YP_842881.1| - 1.4e-07 30.7 0.8 0.00046 19.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|116753763|ref|YP_842881.1| - 5.2e-05 22.5 6.7 9.7e-05 21.6 4.6 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|116753763|ref|YP_842881.1| - 0.0021 17.3 0.5 0.0075 15.5 0.1 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.7 gi|116753763|ref|YP_842881.1| - 0.005 15.8 1.2 0.0074 15.2 0.2 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF561) PA PF02225.17 gi|116753763|ref|YP_842881.1| - 0.026 14.1 1.4 1.6 8.4 0.2 2.5 2 0 0 2 2 2 0 PA domain IMPDH PF00478.20 gi|116753763|ref|YP_842881.1| - 0.073 11.9 1.3 0.14 11.0 0.9 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain NAD_binding_1 PF00175.16 gi|116753764|ref|YP_842882.1| - 3.8e-11 43.5 0.0 5.9e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|116753764|ref|YP_842882.1| - 2.8e-10 39.5 4.0 4.9e-10 38.7 2.8 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|116753764|ref|YP_842882.1| - 0.0009 19.3 0.0 0.0026 17.8 0.0 1.8 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer2_3 PF13085.1 gi|116753764|ref|YP_842882.1| - 0.024 14.4 0.5 0.085 12.6 0.6 1.7 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain FAA_hydrolase PF01557.13 gi|116753765|ref|YP_842883.1| - 2.6e-73 246.0 0.0 3.1e-73 245.8 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.4 gi|116753765|ref|YP_842883.1| - 0.29 11.5 4.0 12 6.4 0.0 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF2437) Rhodanese PF00581.15 gi|116753766|ref|YP_842884.1| - 2.6e-26 92.2 0.1 3.3e-18 66.0 0.0 2.5 2 1 1 3 3 3 2 Rhodanese-like domain DAP_epimerase PF01678.14 gi|116753767|ref|YP_842885.1| - 4.5e-57 191.1 0.3 2.8e-33 114.4 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|116753767|ref|YP_842885.1| - 0.00023 20.0 0.0 0.0028 16.5 0.0 2.0 2 0 0 2 2 2 1 Proline racemase Methyltransf_6 PF03737.10 gi|116753768|ref|YP_842886.1| - 1.5e-39 135.2 2.8 3.5e-39 134.1 2.0 1.6 1 0 0 1 1 1 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|116753768|ref|YP_842886.1| - 3.6e-26 91.9 3.8 8.8e-26 90.7 2.2 1.8 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|116753768|ref|YP_842886.1| - 6.6e-07 28.4 5.9 6.9e-06 25.1 2.3 2.3 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase HMGL-like PF00682.14 gi|116753768|ref|YP_842886.1| - 1.3e-06 28.2 1.0 7.5e-05 22.5 0.1 2.8 1 1 1 3 3 3 1 HMGL-like NMO PF03060.10 gi|116753768|ref|YP_842886.1| - 2.5e-06 26.8 3.4 4.6e-06 26.0 2.4 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|116753768|ref|YP_842886.1| - 1.4e-05 24.4 0.5 6.2e-05 22.3 0.1 2.1 1 1 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.7 gi|116753768|ref|YP_842886.1| - 4.5e-05 22.5 0.3 0.00018 20.5 0.2 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF561) Pterin_bind PF00809.17 gi|116753768|ref|YP_842886.1| - 6.2e-05 22.4 4.3 0.00017 21.0 2.2 2.3 1 1 0 1 1 1 1 Pterin binding enzyme TMP-TENI PF02581.12 gi|116753768|ref|YP_842886.1| - 0.00019 20.6 2.6 0.0017 17.5 1.8 2.5 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI PEP_mutase PF13714.1 gi|116753768|ref|YP_842886.1| - 0.00022 20.5 1.2 0.0011 18.2 0.1 2.3 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase ThiG PF05690.9 gi|116753768|ref|YP_842886.1| - 0.001 18.2 3.4 0.0024 17.0 1.5 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|116753768|ref|YP_842886.1| - 0.02 13.7 0.7 0.068 11.9 0.1 2.2 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) FMN_dh PF01070.13 gi|116753768|ref|YP_842886.1| - 0.022 13.5 8.4 0.011 14.5 2.5 2.1 1 1 1 2 2 2 0 FMN-dependent dehydrogenase Trp_syntA PF00290.15 gi|116753768|ref|YP_842886.1| - 0.74 8.2 4.8 4.3 5.8 1.3 2.7 2 1 1 3 3 3 0 Tryptophan synthase alpha chain HTH_24 PF13412.1 gi|116753769|ref|YP_842887.1| - 1.1e-06 27.9 0.0 2.2e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|116753769|ref|YP_842887.1| - 1.4e-06 27.7 0.0 2.3e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain FaeA PF04703.7 gi|116753769|ref|YP_842887.1| - 2.2e-06 27.7 0.0 3.4e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_11 PF08279.7 gi|116753769|ref|YP_842887.1| - 1.8e-05 24.2 0.1 3.5e-05 23.3 0.0 1.5 2 0 0 2 2 1 1 HTH domain HTH_23 PF13384.1 gi|116753769|ref|YP_842887.1| - 3.4e-05 23.3 0.0 6.9e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain LacI PF00356.16 gi|116753769|ref|YP_842887.1| - 0.00048 19.6 1.1 0.0025 17.4 0.3 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family TrmB PF01978.14 gi|116753769|ref|YP_842887.1| - 0.00062 19.4 0.1 0.00089 18.9 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.1 gi|116753769|ref|YP_842887.1| - 0.0035 17.5 0.0 0.0063 16.6 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|116753769|ref|YP_842887.1| - 0.0053 16.7 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.1 gi|116753769|ref|YP_842887.1| - 0.0061 16.8 0.0 0.0087 16.3 0.0 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.2 gi|116753769|ref|YP_842887.1| - 0.0073 16.5 0.2 0.063 13.5 0.1 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|116753769|ref|YP_842887.1| - 0.0088 15.8 1.0 0.035 13.9 0.2 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain of resolvase TetR_N PF00440.18 gi|116753769|ref|YP_842887.1| - 0.0089 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Fe_dep_repress PF01325.14 gi|116753769|ref|YP_842887.1| - 0.0089 15.9 0.4 0.016 15.1 0.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|116753769|ref|YP_842887.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|116753769|ref|YP_842887.1| - 0.013 15.1 0.0 0.034 13.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TBPIP PF07106.8 gi|116753769|ref|YP_842887.1| - 0.018 14.6 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_AsnC-type PF13404.1 gi|116753769|ref|YP_842887.1| - 0.019 14.5 0.0 0.047 13.2 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|116753769|ref|YP_842887.1| - 0.029 13.5 0.0 0.054 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_31 PF13560.1 gi|116753769|ref|YP_842887.1| - 0.039 14.1 0.5 0.06 13.5 0.0 1.5 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|116753769|ref|YP_842887.1| - 0.047 13.8 0.0 0.058 13.5 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn helix HTH_35 PF13693.1 gi|116753769|ref|YP_842887.1| - 0.053 13.3 0.0 0.081 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_1 PF01527.15 gi|116753769|ref|YP_842887.1| - 0.059 13.3 0.0 0.093 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase HTH_6 PF01418.12 gi|116753769|ref|YP_842887.1| - 0.061 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family CENP-B_N PF04218.8 gi|116753769|ref|YP_842887.1| - 0.08 12.3 0.1 0.28 10.6 0.0 1.9 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain MarR_2 PF12802.2 gi|116753769|ref|YP_842887.1| - 0.097 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family GvpD PF07088.6 gi|116753770|ref|YP_842888.1| - 4.2e-42 144.0 0.0 1.3e-35 122.7 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein KaiC PF06745.8 gi|116753770|ref|YP_842888.1| - 8.9e-11 41.3 0.0 2.5e-08 33.3 0.0 2.5 2 1 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|116753770|ref|YP_842888.1| - 3e-05 23.5 0.0 0.00012 21.6 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|116753770|ref|YP_842888.1| - 0.00046 20.2 0.0 0.00086 19.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|116753770|ref|YP_842888.1| - 0.00088 20.0 0.0 0.0023 18.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|116753770|ref|YP_842888.1| - 0.0013 18.2 0.0 0.0016 17.9 0.0 1.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|116753770|ref|YP_842888.1| - 0.0029 17.7 0.0 0.016 15.3 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|116753770|ref|YP_842888.1| - 0.0046 16.6 0.0 0.0077 15.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_18 PF13238.1 gi|116753770|ref|YP_842888.1| - 0.0052 17.0 0.0 0.01 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|116753770|ref|YP_842888.1| - 0.0076 15.9 0.0 0.032 13.9 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|116753770|ref|YP_842888.1| - 0.01 15.9 0.0 0.025 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|116753770|ref|YP_842888.1| - 0.013 14.4 0.0 2.2 7.0 0.0 2.3 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_14 PF13173.1 gi|116753770|ref|YP_842888.1| - 0.013 15.4 0.0 0.029 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|116753770|ref|YP_842888.1| - 0.016 14.7 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|116753770|ref|YP_842888.1| - 0.018 14.0 0.0 0.028 13.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|116753770|ref|YP_842888.1| - 0.02 14.8 0.0 0.36 10.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|116753770|ref|YP_842888.1| - 0.026 13.9 0.1 0.74 9.2 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|116753770|ref|YP_842888.1| - 0.027 14.1 0.0 0.052 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|116753770|ref|YP_842888.1| - 0.036 13.1 0.0 0.068 12.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.10 gi|116753770|ref|YP_842888.1| - 0.12 12.0 0.1 1.2 8.8 0.0 2.5 3 0 0 3 3 3 0 NTPase ABC_tran PF00005.22 gi|116753770|ref|YP_842888.1| - 0.13 12.5 0.0 0.49 10.7 0.0 1.8 2 0 0 2 2 2 0 ABC transporter AAA PF00004.24 gi|116753771|ref|YP_842889.1| - 6.1e-45 152.6 0.0 1.6e-44 151.2 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|116753771|ref|YP_842889.1| - 4.6e-07 30.0 1.5 3.8e-05 23.7 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_5 PF07728.9 gi|116753771|ref|YP_842889.1| - 1.1e-06 28.4 0.2 1e-05 25.2 0.0 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|116753771|ref|YP_842889.1| - 4.1e-06 26.9 0.2 0.0005 20.2 0.1 2.6 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|116753771|ref|YP_842889.1| - 5.9e-06 26.2 0.0 1.7e-05 24.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|116753771|ref|YP_842889.1| - 7.2e-05 21.9 0.0 0.00015 20.8 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|116753771|ref|YP_842889.1| - 8.4e-05 21.6 0.0 0.00014 20.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|116753771|ref|YP_842889.1| - 0.0003 21.6 0.2 0.002 18.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|116753771|ref|YP_842889.1| - 0.00067 19.3 0.1 0.0016 18.1 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|116753771|ref|YP_842889.1| - 0.0016 17.8 0.0 0.0035 16.7 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_28 PF13521.1 gi|116753771|ref|YP_842889.1| - 0.0018 18.2 0.8 0.003 17.5 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|116753771|ref|YP_842889.1| - 0.0029 17.9 0.0 0.026 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|116753771|ref|YP_842889.1| - 0.0029 17.7 0.0 0.005 16.9 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_25 PF13481.1 gi|116753771|ref|YP_842889.1| - 0.0031 16.9 1.1 0.1 12.0 0.1 2.6 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.8 gi|116753771|ref|YP_842889.1| - 0.0042 15.8 0.0 0.0074 15.0 0.0 1.3 1 0 0 1 1 1 1 TIP49 C-terminus Zeta_toxin PF06414.7 gi|116753771|ref|YP_842889.1| - 0.0052 15.9 0.0 0.011 14.8 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin Arch_ATPase PF01637.13 gi|116753771|ref|YP_842889.1| - 0.0053 16.4 0.3 0.23 11.1 0.0 2.7 2 1 1 3 3 3 1 Archaeal ATPase Mg_chelatase PF01078.16 gi|116753771|ref|YP_842889.1| - 0.0067 15.6 0.0 0.015 14.4 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|116753771|ref|YP_842889.1| - 0.0067 16.0 0.0 0.021 14.4 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|116753771|ref|YP_842889.1| - 0.0091 15.8 0.6 0.017 14.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_24 PF13479.1 gi|116753771|ref|YP_842889.1| - 0.0092 15.5 0.1 0.019 14.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|116753771|ref|YP_842889.1| - 0.024 14.1 0.1 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|116753771|ref|YP_842889.1| - 0.036 14.1 0.0 0.097 12.7 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|116753771|ref|YP_842889.1| - 0.036 12.9 0.0 0.062 12.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain KaiC PF06745.8 gi|116753771|ref|YP_842889.1| - 0.039 13.0 0.0 0.1 11.7 0.0 1.7 1 0 0 1 1 1 0 KaiC AAA_14 PF13173.1 gi|116753771|ref|YP_842889.1| - 0.042 13.7 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|116753771|ref|YP_842889.1| - 0.042 13.4 0.4 0.11 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|116753771|ref|YP_842889.1| - 0.048 12.5 0.0 0.087 11.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|116753771|ref|YP_842889.1| - 0.07 12.3 0.1 0.13 11.4 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein NTPase_1 PF03266.10 gi|116753771|ref|YP_842889.1| - 0.071 12.8 0.0 0.23 11.1 0.0 1.9 2 0 0 2 2 2 0 NTPase Sigma54_activat PF00158.21 gi|116753771|ref|YP_842889.1| - 0.073 12.5 0.0 0.21 11.0 0.0 1.7 2 0 0 2 2 1 0 Sigma-54 interaction domain NACHT PF05729.7 gi|116753771|ref|YP_842889.1| - 0.089 12.4 0.1 0.51 9.9 0.0 2.1 2 0 0 2 2 2 0 NACHT domain Torsin PF06309.6 gi|116753771|ref|YP_842889.1| - 0.18 11.6 0.0 0.38 10.6 0.0 1.4 1 0 0 1 1 1 0 Torsin AAA_23 PF13476.1 gi|116753771|ref|YP_842889.1| - 4.4 7.5 7.3 21 5.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain HTH_3 PF01381.17 gi|116753772|ref|YP_842890.1| - 1.6e-05 24.6 2.4 2.5e-05 24.0 1.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|116753772|ref|YP_842890.1| - 2.1e-05 24.4 3.3 3.8e-05 23.6 2.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|116753772|ref|YP_842890.1| - 0.00024 20.6 1.7 0.00053 19.5 1.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|116753772|ref|YP_842890.1| - 0.0071 16.5 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4443 PF14544.1 gi|116753772|ref|YP_842890.1| - 0.024 14.5 0.1 0.033 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4443) Sua5_yciO_yrdC PF01300.13 gi|116753773|ref|YP_842891.1| - 9.9e-49 164.9 0.0 1.1e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination NTP_transf_2 PF01909.18 gi|116753774|ref|YP_842892.1| - 1.2e-05 25.5 0.0 2.9e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF2007 PF09413.5 gi|116753774|ref|YP_842892.1| - 0.035 13.9 0.0 0.069 12.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2007) Glycos_trans_3N PF02885.12 gi|116753775|ref|YP_842893.1| - 3.2e-12 45.8 0.0 7.9e-12 44.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.16 gi|116753775|ref|YP_842893.1| - 4.3e-12 45.9 1.1 3e-11 43.2 0.8 2.0 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.8 gi|116753775|ref|YP_842893.1| - 1.5e-10 40.3 0.0 3.2e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Molydop_binding PF01568.16 gi|116753775|ref|YP_842893.1| - 3.3e-05 23.6 0.0 7.3e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.4 gi|116753775|ref|YP_842893.1| - 0.0053 15.2 0.0 0.0082 14.6 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) HlyD_3 PF13437.1 gi|116753775|ref|YP_842893.1| - 0.013 15.8 0.0 23 5.3 0.0 3.5 3 0 0 3 3 3 0 HlyD family secretion protein Hist_deacetyl PF00850.14 gi|116753776|ref|YP_842894.1| - 3.3e-47 161.2 0.5 1.6e-46 159.0 0.5 1.7 1 1 1 2 2 2 2 Histone deacetylase domain DUF89 PF01937.14 gi|116753777|ref|YP_842895.1| - 1.4e-37 129.3 0.0 4.5e-37 127.6 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function DUF89 PAC2 PF09754.4 gi|116753778|ref|YP_842896.1| - 5.7e-26 91.7 0.1 6.9e-26 91.4 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Radical_SAM PF04055.16 gi|116753780|ref|YP_842898.1| - 1.3e-16 61.2 0.0 2.7e-15 56.9 0.0 2.5 3 0 0 3 3 3 1 Radical SAM superfamily SPASM PF13186.1 gi|116753780|ref|YP_842898.1| - 1.8e-07 31.4 1.2 5.2e-07 29.9 0.8 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|116753780|ref|YP_842898.1| - 1.4e-05 25.0 0.0 1.4e-05 25.0 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|116753780|ref|YP_842898.1| - 0.00028 21.0 0.1 0.00094 19.3 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain SSF PF00474.12 gi|116753781|ref|YP_842899.1| - 3e-59 200.6 40.4 4.1e-59 200.2 28.0 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family AAA PF00004.24 gi|116753783|ref|YP_842901.1| - 1.9e-15 57.2 0.1 4.6e-14 52.7 0.0 2.6 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|116753783|ref|YP_842901.1| - 1.6e-08 33.6 0.0 0.00042 19.1 0.0 2.5 3 0 0 3 3 3 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|116753783|ref|YP_842901.1| - 1.2e-07 31.9 0.0 0.001 19.1 0.0 3.6 2 1 1 3 3 3 1 AAA domain RuvB_N PF05496.7 gi|116753783|ref|YP_842901.1| - 2.4e-07 30.0 0.0 9.3e-07 28.1 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|116753783|ref|YP_842901.1| - 3.4e-06 27.8 0.5 3.5e-05 24.6 0.0 2.7 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|116753783|ref|YP_842901.1| - 0.00032 20.7 0.8 0.014 15.4 0.0 3.3 3 1 0 3 3 3 1 AAA ATPase domain AAA_14 PF13173.1 gi|116753783|ref|YP_842901.1| - 0.00033 20.5 0.0 0.00073 19.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|116753783|ref|YP_842901.1| - 0.00043 20.0 0.0 0.0091 15.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|116753783|ref|YP_842901.1| - 0.00098 18.5 0.1 0.0032 16.9 0.0 1.8 1 1 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|116753783|ref|YP_842901.1| - 0.0011 17.8 0.0 0.0099 14.6 0.0 2.1 2 0 0 2 2 2 1 TIP49 C-terminus AAA_25 PF13481.1 gi|116753783|ref|YP_842901.1| - 0.0017 17.7 0.2 0.015 14.6 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|116753783|ref|YP_842901.1| - 0.0082 15.7 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|116753783|ref|YP_842901.1| - 0.011 16.0 0.0 0.056 13.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|116753783|ref|YP_842901.1| - 0.022 14.9 0.0 0.043 13.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.1 gi|116753783|ref|YP_842901.1| - 0.029 14.1 0.0 0.11 12.2 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain Zeta_toxin PF06414.7 gi|116753783|ref|YP_842901.1| - 0.03 13.4 0.0 0.058 12.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin DNA_pol3_delta PF06144.8 gi|116753783|ref|YP_842901.1| - 0.056 12.9 0.0 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 DNA polymerase III, delta subunit AAA_2 PF07724.9 gi|116753783|ref|YP_842901.1| - 0.075 12.9 0.0 1.2 8.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_11 PF13086.1 gi|116753783|ref|YP_842901.1| - 0.11 12.0 0.0 0.25 10.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain PPV_E1_C PF00519.12 gi|116753783|ref|YP_842901.1| - 0.18 10.3 0.0 0.28 9.7 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase Pyridox_ox_2 PF12900.2 gi|116753784|ref|YP_842902.1| - 5.5e-25 87.8 0.0 6.2e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|116753784|ref|YP_842902.1| - 2.1e-11 43.6 0.0 2.7e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase polyprenyl_synt PF00348.12 gi|116753785|ref|YP_842903.1| - 2.1e-62 210.3 0.0 2.4e-62 210.1 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|116753786|ref|YP_842904.1| - 4.2e-16 59.1 0.3 7.4e-16 58.3 0.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|116753786|ref|YP_842904.1| - 1.8e-09 37.4 0.2 2.5e-07 30.4 0.1 2.3 2 0 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|116753786|ref|YP_842904.1| - 4.3e-09 36.0 0.5 1.2e-08 34.6 0.1 1.9 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase FMN_dh PF01070.13 gi|116753787|ref|YP_842905.1| - 3.5e-27 95.1 0.0 1.7e-17 63.3 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|116753787|ref|YP_842905.1| - 4.3e-05 22.5 0.7 0.052 12.4 0.7 3.0 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|116753787|ref|YP_842905.1| - 0.043 12.7 0.4 0.17 10.8 0.1 2.0 2 1 0 2 2 2 0 Conserved region in glutamate synthase AA_kinase PF00696.23 gi|116753788|ref|YP_842906.1| - 1.5e-38 132.7 1.6 1.6e-38 132.5 1.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.21 gi|116753789|ref|YP_842907.1| - 1.1e-17 63.8 1.7 3.8e-17 62.1 1.2 2.0 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|116753789|ref|YP_842907.1| - 8.9e-12 45.0 0.6 8.9e-12 45.0 0.4 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|116753789|ref|YP_842907.1| - 0.011 15.0 0.0 0.025 13.8 0.0 1.7 1 0 0 1 1 1 0 Galactokinase galactose-binding signature Memo PF01875.12 gi|116753790|ref|YP_842908.1| - 3.6e-69 232.6 0.0 4.2e-69 232.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|116753790|ref|YP_842908.1| - 0.00029 19.9 0.0 0.00039 19.4 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.15 gi|116753791|ref|YP_842909.1| - 2.9e-39 134.4 0.0 5.9e-20 71.3 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 PHP PF02811.14 gi|116753791|ref|YP_842909.1| - 0.035 13.9 0.0 0.093 12.5 0.0 1.6 2 0 0 2 2 2 0 PHP domain Peripla_BP_4 PF13407.1 gi|116753791|ref|YP_842909.1| - 0.14 11.5 0.2 0.28 10.4 0.1 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain RNA_pol_Rpb6 PF01192.17 gi|116753792|ref|YP_842910.1| - 8.5e-18 63.8 0.2 1e-17 63.6 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|116753793|ref|YP_842911.1| - 6.5e-28 96.5 0.8 7.3e-28 96.3 0.5 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|116753793|ref|YP_842911.1| - 0.0083 16.2 0.2 0.0094 16.0 0.1 1.1 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.14 gi|116753794|ref|YP_842912.1| - 4.5e-35 120.5 0.7 5.1e-35 120.3 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|116753795|ref|YP_842913.1| - 9.9e-24 83.8 0.0 1.3e-23 83.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|116753796|ref|YP_842914.1| - 1.2e-16 61.2 0.2 1.5e-16 60.8 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RuvA_C PF07499.8 gi|116753796|ref|YP_842914.1| - 0.014 15.4 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 RuvA, C-terminal domain HTH_3 PF01381.17 gi|116753797|ref|YP_842915.1| - 1.8e-05 24.4 0.0 3.8e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.1 gi|116753797|ref|YP_842915.1| - 0.0015 18.2 0.0 0.0033 17.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|116753797|ref|YP_842915.1| - 0.0025 17.9 0.1 0.0035 17.5 0.1 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|116753797|ref|YP_842915.1| - 0.0041 16.7 0.3 0.012 15.2 0.1 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_19 PF12844.2 gi|116753797|ref|YP_842915.1| - 0.0055 16.7 0.0 0.021 14.8 0.0 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|116753797|ref|YP_842915.1| - 0.056 13.4 0.1 0.098 12.6 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF438 PF04282.8 gi|116753797|ref|YP_842915.1| - 0.061 13.1 0.1 0.34 10.7 0.0 2.1 2 1 0 2 2 2 0 Family of unknown function (DUF438) MarR_2 PF12802.2 gi|116753797|ref|YP_842915.1| - 0.084 12.5 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 MarR family Trp_repressor PF01371.14 gi|116753797|ref|YP_842915.1| - 0.1 12.5 0.2 0.29 11.0 0.1 1.7 1 1 0 1 1 1 0 Trp repressor protein PSD5 PF07637.6 gi|116753797|ref|YP_842915.1| - 0.11 12.5 0.0 1 9.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1595) HTH_38 PF13936.1 gi|116753797|ref|YP_842915.1| - 0.11 12.0 0.7 0.25 10.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|116753797|ref|YP_842915.1| - 0.15 11.5 0.2 0.46 9.9 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 zf-DHHC PF01529.15 gi|116753798|ref|YP_842916.1| - 0.76 9.1 5.7 0.12 11.7 0.1 2.4 1 1 2 3 3 3 0 DHHC palmitoyltransferase Methyltransf_11 PF08241.7 gi|116753800|ref|YP_842918.1| - 3.2e-16 59.5 0.0 7.6e-16 58.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116753800|ref|YP_842918.1| - 1.7e-13 50.6 0.0 2.2e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116753800|ref|YP_842918.1| - 8.7e-11 42.3 0.0 1.3e-10 41.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116753800|ref|YP_842918.1| - 1.2e-10 41.6 0.0 1.9e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|116753800|ref|YP_842918.1| - 5.4e-09 36.4 0.0 9.4e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|116753800|ref|YP_842918.1| - 9.4e-09 35.3 0.0 1.6e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116753800|ref|YP_842918.1| - 1.7e-08 34.2 0.0 4.9e-08 32.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|116753800|ref|YP_842918.1| - 2.1e-05 23.7 0.0 7.6e-05 21.9 0.0 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family TPMT PF05724.6 gi|116753800|ref|YP_842918.1| - 0.00016 21.2 0.0 0.00022 20.7 0.0 1.1 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MetW PF07021.7 gi|116753800|ref|YP_842918.1| - 0.00023 20.5 0.9 0.019 14.3 0.1 2.1 1 1 1 2 2 2 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|116753800|ref|YP_842918.1| - 0.0054 15.8 0.3 0.0093 15.0 0.2 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|116753800|ref|YP_842918.1| - 0.026 14.0 0.0 0.037 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.6 gi|116753800|ref|YP_842918.1| - 0.028 13.1 0.2 0.062 11.9 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) TehB PF03848.9 gi|116753800|ref|YP_842918.1| - 0.034 13.3 0.0 0.084 12.0 0.0 1.6 2 0 0 2 2 2 0 Tellurite resistance protein TehB MTS PF05175.9 gi|116753800|ref|YP_842918.1| - 0.059 12.7 0.0 0.088 12.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain ADP_ribosyl_GH PF03747.9 gi|116753801|ref|YP_842919.1| - 6.6e-69 232.8 0.3 7.6e-69 232.6 0.2 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase DUF531 PF04407.7 gi|116753801|ref|YP_842919.1| - 0.17 11.7 0.0 0.68 9.8 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF531) Semialdhyde_dh PF01118.19 gi|116753802|ref|YP_842920.1| - 6.5e-34 116.8 0.0 1.3e-33 115.9 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|116753802|ref|YP_842920.1| - 2.5e-21 76.3 0.0 3.4e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.12 gi|116753802|ref|YP_842920.1| - 0.00026 21.3 0.0 0.00058 20.2 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|116753802|ref|YP_842920.1| - 0.0034 17.8 0.0 0.0064 17.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CBS PF00571.23 gi|116753803|ref|YP_842921.1| - 1.1e-39 133.9 1.0 1.8e-19 69.2 0.1 2.3 2 0 0 2 2 2 2 CBS domain GAF_2 PF13185.1 gi|116753803|ref|YP_842921.1| - 0.021 15.3 0.0 3.6 8.0 0.0 2.1 1 1 1 2 2 2 0 GAF domain ArgJ PF01960.13 gi|116753804|ref|YP_842922.1| - 1.6e-132 441.5 0.5 1.9e-132 441.3 0.4 1.0 1 0 0 1 1 1 1 ArgJ family Lyase_1 PF00206.15 gi|116753805|ref|YP_842923.1| - 1.7e-59 201.5 0.0 2.5e-59 201.0 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|116753805|ref|YP_842923.1| - 2.7e-12 46.5 0.0 9.2e-12 44.8 0.0 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal CMD PF02627.15 gi|116753806|ref|YP_842924.1| - 1e-16 60.4 0.7 1.6e-16 59.9 0.5 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Imm39 PF15600.1 gi|116753806|ref|YP_842924.1| - 0.052 13.4 0.1 0.084 12.7 0.1 1.4 1 1 0 1 1 1 0 Immunity protein 39 MCR_C PF04609.7 gi|116753807|ref|YP_842925.1| - 2.5e-113 377.3 0.2 2.8e-113 377.1 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.4 gi|116753808|ref|YP_842926.1| - 1.3e-62 210.3 0.1 1.5e-62 210.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.15 gi|116753809|ref|YP_842927.1| - 6.3e-60 202.7 3.3 8.2e-60 202.3 2.3 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.1 gi|116753809|ref|YP_842927.1| - 0.00076 19.3 1.7 0.02 14.7 1.2 2.9 1 1 0 1 1 1 1 Cell division protein FtsA Hydant_A_N PF05378.8 gi|116753809|ref|YP_842927.1| - 0.00079 18.9 4.2 0.001 18.6 0.4 2.7 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region MreB_Mbl PF06723.8 gi|116753809|ref|YP_842927.1| - 0.0014 17.3 0.2 0.0039 15.8 0.1 1.8 2 0 0 2 2 2 1 MreB/Mbl protein MutL PF13941.1 gi|116753809|ref|YP_842927.1| - 0.0044 15.4 2.6 0.068 11.4 0.3 2.3 2 0 0 2 2 2 1 MutL protein FGGY_N PF00370.16 gi|116753809|ref|YP_842927.1| - 0.0047 16.2 0.6 0.1 11.8 0.4 2.3 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|116753809|ref|YP_842927.1| - 0.0053 16.3 0.8 0.011 15.3 0.1 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain Peptidase_M22 PF00814.20 gi|116753809|ref|YP_842927.1| - 0.0093 15.4 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 1 Glycoprotease family Jag_N PF14804.1 gi|116753809|ref|YP_842927.1| - 0.059 13.3 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 Jag N-terminus PilM_2 PF11104.3 gi|116753809|ref|YP_842927.1| - 0.064 12.1 0.1 0.16 10.7 0.0 1.6 2 0 0 2 2 2 0 Type IV pilus assembly protein PilM; DnaG_DnaB_bind PF08278.6 gi|116753809|ref|YP_842927.1| - 0.17 12.0 0.7 5 7.3 0.1 2.6 3 0 0 3 3 3 0 DNA primase DnaG DnaB-binding DUF2112 PF09885.4 gi|116753810|ref|YP_842928.1| - 1.3e-63 212.8 0.0 1.5e-63 212.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.4 gi|116753811|ref|YP_842929.1| - 1.6e-45 152.8 0.0 2e-45 152.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Pro_isomerase PF00160.16 gi|116753812|ref|YP_842930.1| - 7.6e-06 26.2 0.0 3.1 7.9 0.0 4.1 3 1 0 3 3 3 3 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PASTA PF03793.14 gi|116753812|ref|YP_842930.1| - 0.0014 18.2 0.0 0.0045 16.5 0.0 1.9 1 0 0 1 1 1 1 PASTA domain ABC_tran PF00005.22 gi|116753813|ref|YP_842931.1| - 2e-49 167.4 0.0 2.1e-25 89.6 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|116753813|ref|YP_842931.1| - 4.8e-07 30.0 1.0 0.12 12.3 0.5 4.0 3 1 0 3 3 3 1 AAA domain SbcCD_C PF13558.1 gi|116753813|ref|YP_842931.1| - 5e-05 23.1 0.0 1 9.3 0.0 3.3 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|116753813|ref|YP_842931.1| - 0.00017 21.0 0.4 0.35 10.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain DUF258 PF03193.11 gi|116753813|ref|YP_842931.1| - 0.00019 20.6 0.1 0.22 10.6 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|116753813|ref|YP_842931.1| - 0.0016 17.6 5.3 0.14 11.3 0.0 3.6 3 1 0 4 4 4 1 RecF/RecN/SMC N terminal domain DUF87 PF01935.12 gi|116753813|ref|YP_842931.1| - 0.0027 17.5 2.4 0.19 11.4 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function DUF87 NB-ARC PF00931.17 gi|116753813|ref|YP_842931.1| - 0.0048 15.7 1.3 1.1 8.0 0.1 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_16 PF13191.1 gi|116753813|ref|YP_842931.1| - 0.0068 16.4 3.0 1.6 8.7 0.5 3.4 2 2 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|116753813|ref|YP_842931.1| - 0.01 14.9 0.1 0.59 9.1 0.0 2.9 4 0 0 4 4 4 0 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|116753813|ref|YP_842931.1| - 0.031 13.7 0.5 1.3 8.4 0.0 2.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|116753813|ref|YP_842931.1| - 0.032 13.6 4.1 1.5 8.1 0.0 3.0 3 0 0 3 3 3 0 AAA-like domain AAA_23 PF13476.1 gi|116753813|ref|YP_842931.1| - 0.04 14.2 0.1 1.6 9.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|116753813|ref|YP_842931.1| - 0.046 14.0 1.8 0.63 10.3 0.2 2.6 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|116753813|ref|YP_842931.1| - 0.054 12.9 0.9 38 3.6 0.0 3.6 3 1 0 3 3 3 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|116753813|ref|YP_842931.1| - 0.055 14.2 4.9 0.24 12.2 0.8 2.9 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|116753813|ref|YP_842931.1| - 0.11 12.4 1.5 1.1 9.2 0.1 2.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase zf-CSL PF05207.8 gi|116753813|ref|YP_842931.1| - 0.14 11.7 0.3 0.39 10.2 0.0 1.8 2 0 0 2 2 2 0 CSL zinc finger AAA_13 PF13166.1 gi|116753813|ref|YP_842931.1| - 0.18 10.2 0.6 5 5.4 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.1 gi|116753813|ref|YP_842931.1| - 0.22 11.6 1.6 25 5.0 0.0 3.0 3 0 0 3 3 3 0 AAA domain Flavoprotein PF02441.14 gi|116753814|ref|YP_842932.1| - 2.3e-31 108.1 0.0 3e-31 107.7 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein MFS_1 PF07690.11 gi|116753815|ref|YP_842933.1| - 8.2e-54 182.6 51.8 2e-36 125.4 17.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|116753815|ref|YP_842933.1| - 4.4e-06 25.5 14.1 4.4e-06 25.5 9.8 2.8 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|116753815|ref|YP_842933.1| - 7.8e-05 20.9 23.2 9.4e-05 20.7 16.1 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Folate_carrier PF01770.13 gi|116753815|ref|YP_842933.1| - 0.058 11.8 7.0 1.1 7.7 2.4 2.3 2 0 0 2 2 2 0 Reduced folate carrier AsnC_trans_reg PF01037.16 gi|116753816|ref|YP_842934.1| - 5.2e-11 42.0 0.1 6.4e-11 41.8 0.1 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|116753816|ref|YP_842934.1| - 0.0036 17.0 0.0 0.0042 16.7 0.0 1.1 1 0 0 1 1 1 1 GYD domain MIase PF02426.11 gi|116753816|ref|YP_842934.1| - 0.12 12.2 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Muconolactone delta-isomerase TPR_1 PF00515.23 gi|116753817|ref|YP_842935.1| - 3.6e-32 108.6 0.8 6.4e-13 47.6 0.1 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|116753817|ref|YP_842935.1| - 1.2e-29 99.7 1.0 2.5e-10 39.4 0.1 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|116753817|ref|YP_842935.1| - 4.9e-28 96.8 5.2 6.1e-12 45.3 0.1 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|116753817|ref|YP_842935.1| - 2.6e-27 94.2 2.9 3.2e-15 55.5 0.4 3.1 2 1 1 3 3 3 3 TPR repeat TPR_19 PF14559.1 gi|116753817|ref|YP_842935.1| - 1.6e-20 73.1 1.0 7.5e-08 32.5 0.0 3.0 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|116753817|ref|YP_842935.1| - 1e-19 69.2 0.4 8.3e-05 22.8 0.1 4.2 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|116753817|ref|YP_842935.1| - 2.4e-19 67.6 0.5 4e-07 29.3 0.1 4.2 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|116753817|ref|YP_842935.1| - 4.7e-19 66.9 3.1 1.7e-08 34.0 0.1 4.0 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|116753817|ref|YP_842935.1| - 3.3e-18 65.8 0.1 1.4e-09 38.3 0.1 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|116753817|ref|YP_842935.1| - 4e-18 63.6 0.9 0.0057 16.3 0.0 4.2 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|116753817|ref|YP_842935.1| - 2.3e-16 59.4 10.1 1.4e-09 37.7 0.1 2.9 1 1 2 3 3 3 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|116753817|ref|YP_842935.1| - 1.2e-13 51.0 0.6 3.1e-07 30.4 0.0 2.1 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|116753817|ref|YP_842935.1| - 1.4e-11 43.8 1.5 0.00059 19.6 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|116753817|ref|YP_842935.1| - 2.2e-10 40.2 0.0 0.04 14.3 0.0 4.1 4 1 0 4 4 4 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|116753817|ref|YP_842935.1| - 1.3e-08 34.5 0.1 0.006 16.4 0.0 3.3 3 0 0 3 3 3 2 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|116753817|ref|YP_842935.1| - 6.3e-05 21.9 0.1 0.32 9.7 0.0 2.1 1 1 0 2 2 2 2 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|116753817|ref|YP_842935.1| - 8.6e-05 21.7 0.0 0.0042 16.1 0.0 2.0 1 1 1 2 2 2 1 Tetratricopeptide repeat PPR PF01535.15 gi|116753817|ref|YP_842935.1| - 0.00018 21.2 0.8 2.5 8.2 0.0 4.0 4 0 0 4 4 4 1 PPR repeat TPR_4 PF07721.9 gi|116753817|ref|YP_842935.1| - 0.00026 21.1 0.0 5.9 7.6 0.0 3.7 4 0 0 4 4 3 0 Tetratricopeptide repeat MIT PF04212.13 gi|116753817|ref|YP_842935.1| - 0.0012 18.7 2.5 0.25 11.2 0.2 3.5 2 1 1 3 3 3 2 MIT (microtubule interacting and transport) domain DUF3856 PF12968.2 gi|116753817|ref|YP_842935.1| - 0.0014 18.5 0.1 0.27 11.0 0.0 2.9 1 1 1 3 3 3 1 Domain of Unknown Function (DUF3856) BTAD PF03704.12 gi|116753817|ref|YP_842935.1| - 0.0017 18.6 0.2 0.019 15.2 0.0 2.3 1 1 2 3 3 3 1 Bacterial transcriptional activator domain TPR_3 PF07720.7 gi|116753817|ref|YP_842935.1| - 0.0036 17.0 0.0 1.4 8.8 0.0 3.7 4 0 0 4 4 4 1 Tetratricopeptide repeat RPN7 PF10602.4 gi|116753817|ref|YP_842935.1| - 0.0036 16.6 0.7 1.1 8.5 0.1 3.3 1 1 1 3 3 3 1 26S proteasome subunit RPN7 Rapsyn_N PF10579.4 gi|116753817|ref|YP_842935.1| - 0.0044 16.8 0.0 2.8 7.8 0.0 3.2 1 1 2 3 3 3 1 Rapsyn N-terminal myristoylation and linker region TPR_20 PF14561.1 gi|116753817|ref|YP_842935.1| - 0.011 15.8 0.2 0.23 11.6 0.1 2.3 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_5 PF12688.2 gi|116753817|ref|YP_842935.1| - 0.03 14.3 0.1 0.12 12.4 0.1 2.0 1 1 1 2 2 2 0 Tetratrico peptide repeat PPTA PF01239.17 gi|116753817|ref|YP_842935.1| - 0.13 11.6 0.2 0.39 10.1 0.1 1.9 2 0 0 2 2 2 0 Protein prenyltransferase alpha subunit repeat Coatomer_E PF04733.9 gi|116753817|ref|YP_842935.1| - 0.14 11.3 0.1 0.77 8.8 0.0 2.1 1 1 2 3 3 3 0 Coatomer epsilon subunit DUF3467 PF11950.3 gi|116753818|ref|YP_842936.1| - 8.4e-16 57.7 0.0 1.1e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) DUF123 PF01986.11 gi|116753820|ref|YP_842938.1| - 3.1e-28 97.7 0.0 3.9e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF512 PF04459.7 gi|116753821|ref|YP_842939.1| - 6.4e-28 97.2 0.0 8.5e-28 96.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|116753821|ref|YP_842939.1| - 2.1e-11 44.2 8.9 8.6e-11 42.2 4.0 2.9 2 2 0 2 2 2 1 Radical SAM superfamily FmdE PF02663.9 gi|116753822|ref|YP_842940.1| - 2.6e-38 130.8 0.0 5.8e-29 100.6 0.0 2.4 2 1 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon SBP_bac_5 PF00496.17 gi|116753823|ref|YP_842941.1| - 1.1e-84 284.4 2.2 1.6e-84 283.8 1.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle KGG PF10685.4 gi|116753823|ref|YP_842941.1| - 0.069 13.1 2.8 7.4 6.6 0.2 3.2 3 0 0 3 3 3 0 Stress-induced bacterial acidophilic repeat motif CbiA PF01656.18 gi|116753824|ref|YP_842942.1| - 3e-22 78.9 0.1 5.8e-22 78.0 0.1 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|116753824|ref|YP_842942.1| - 1.3e-08 34.8 0.0 2.4e-06 27.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|116753824|ref|YP_842942.1| - 5.4e-06 25.6 0.3 8.9e-06 24.9 0.2 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|116753824|ref|YP_842942.1| - 8.9e-06 26.5 0.2 2.6e-05 25.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|116753824|ref|YP_842942.1| - 1.4e-05 24.6 0.1 3.2e-05 23.5 0.1 1.6 1 1 0 1 1 1 1 AAA-like domain APS_kinase PF01583.15 gi|116753824|ref|YP_842942.1| - 1.8e-05 24.4 0.0 3.2e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase DUF87 PF01935.12 gi|116753824|ref|YP_842942.1| - 4.1e-05 23.4 0.0 8.9e-05 22.4 0.0 1.7 2 0 0 2 2 1 1 Domain of unknown function DUF87 MobB PF03205.9 gi|116753824|ref|YP_842942.1| - 5.9e-05 22.8 0.1 0.00021 21.0 0.0 1.9 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|116753824|ref|YP_842942.1| - 0.00024 20.2 0.0 0.00093 18.3 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin MipZ PF09140.6 gi|116753824|ref|YP_842942.1| - 0.00029 20.0 0.0 0.0047 16.0 0.0 2.0 2 0 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.13 gi|116753824|ref|YP_842942.1| - 0.0003 20.0 2.3 0.0016 17.7 1.6 2.2 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|116753824|ref|YP_842942.1| - 0.00047 19.6 0.0 0.0038 16.7 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|116753824|ref|YP_842942.1| - 0.00055 19.3 0.0 0.0017 17.7 0.0 1.9 1 1 2 3 3 3 1 AAA domain KTI12 PF08433.5 gi|116753824|ref|YP_842942.1| - 0.00061 19.0 0.0 0.001 18.3 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|116753824|ref|YP_842942.1| - 0.00069 19.9 0.9 0.0017 18.6 0.1 2.2 2 1 0 2 2 2 1 AAA domain TrkA_N PF02254.13 gi|116753824|ref|YP_842942.1| - 0.00099 19.0 0.3 0.5 10.3 0.0 2.6 2 1 0 2 2 2 1 TrkA-N domain TrwB_AAD_bind PF10412.4 gi|116753824|ref|YP_842942.1| - 0.0026 16.4 0.2 0.0053 15.4 0.1 1.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain YhjQ PF06564.7 gi|116753824|ref|YP_842942.1| - 0.0054 16.1 0.0 0.16 11.3 0.0 2.1 2 0 0 2 2 2 1 YhjQ protein AAA_16 PF13191.1 gi|116753824|ref|YP_842942.1| - 0.0077 16.2 0.2 0.02 14.9 0.1 1.8 2 1 0 2 2 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|116753824|ref|YP_842942.1| - 0.0087 15.9 0.0 0.033 14.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|116753824|ref|YP_842942.1| - 0.024 13.5 0.0 0.039 12.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|116753824|ref|YP_842942.1| - 0.026 14.8 0.0 0.031 14.5 0.0 1.7 1 1 0 1 1 1 0 ABC transporter ArgK PF03308.11 gi|116753824|ref|YP_842942.1| - 0.029 13.1 0.1 0.05 12.3 0.1 1.4 1 0 0 1 1 1 0 ArgK protein FtsK_SpoIIIE PF01580.13 gi|116753824|ref|YP_842942.1| - 0.036 13.5 0.1 0.094 12.1 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF3964 PF13107.1 gi|116753824|ref|YP_842942.1| - 0.042 14.1 0.0 0.088 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3964) AAA_22 PF13401.1 gi|116753824|ref|YP_842942.1| - 0.045 13.8 0.0 0.1 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|116753824|ref|YP_842942.1| - 0.055 13.6 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase KaiC PF06745.8 gi|116753824|ref|YP_842942.1| - 0.074 12.1 0.0 0.14 11.2 0.0 1.6 1 0 0 1 1 1 0 KaiC VirC1 PF07015.6 gi|116753824|ref|YP_842942.1| - 0.15 11.0 0.1 0.36 9.8 0.0 1.6 1 0 0 1 1 1 0 VirC1 protein KAP_NTPase PF07693.9 gi|116753824|ref|YP_842942.1| - 0.17 10.8 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_29 PF13555.1 gi|116753824|ref|YP_842942.1| - 0.18 11.3 0.6 0.31 10.6 0.4 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0066 PF01980.11 gi|116753825|ref|YP_842943.1| - 7e-40 135.7 0.0 8.4e-40 135.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 Lycopene_cycl PF05834.7 gi|116753826|ref|YP_842944.1| - 4.2e-11 42.3 0.1 9.5e-11 41.2 0.0 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein DAO PF01266.19 gi|116753826|ref|YP_842944.1| - 1.7e-08 33.7 2.3 8.1e-05 21.6 0.0 3.1 1 1 1 3 3 3 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|116753826|ref|YP_842944.1| - 1.2e-05 24.5 0.4 0.00078 18.6 0.0 2.6 3 0 0 3 3 3 1 Thi4 family FAD_oxidored PF12831.2 gi|116753826|ref|YP_842944.1| - 2.4e-05 23.6 3.7 2.5e-05 23.5 0.8 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|116753826|ref|YP_842944.1| - 0.00011 22.1 0.0 0.00016 21.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|116753826|ref|YP_842944.1| - 0.00011 21.3 0.0 0.0059 15.7 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.9 gi|116753826|ref|YP_842944.1| - 0.00014 20.6 0.1 0.00035 19.3 0.0 1.6 2 0 0 2 2 2 1 Tryptophan halogenase GIDA PF01134.17 gi|116753826|ref|YP_842944.1| - 0.00022 20.2 0.0 0.001 18.0 0.0 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|116753826|ref|YP_842944.1| - 0.0019 16.7 0.1 0.0034 15.9 0.0 1.4 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|116753826|ref|YP_842944.1| - 0.0033 17.5 0.0 0.0054 16.8 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|116753826|ref|YP_842944.1| - 0.016 14.1 0.1 0.039 12.8 0.1 1.6 1 0 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.1 gi|116753826|ref|YP_842944.1| - 0.038 14.0 0.5 0.26 11.3 0.0 2.6 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|116753826|ref|YP_842944.1| - 0.11 12.3 0.5 0.69 9.6 0.0 2.4 3 0 0 3 3 3 0 FAD-NAD(P)-binding PQQ_3 PF13570.1 gi|116753827|ref|YP_842945.1| - 0.055 13.7 0.4 0.88 9.9 0.0 3.1 2 1 1 3 3 3 0 PQQ-like domain MFS_1 PF07690.11 gi|116753828|ref|YP_842946.1| - 1.2e-39 135.9 66.4 1.5e-28 99.5 23.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|116753828|ref|YP_842946.1| - 0.0024 16.4 15.9 0.0024 16.4 11.0 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter DUF412 PF04217.8 gi|116753828|ref|YP_842946.1| - 2.5 7.9 9.8 0.27 11.0 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function, DUF412 NAD_binding_1 PF00175.16 gi|116753830|ref|YP_842948.1| - 1.2e-14 54.7 0.0 1.8e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|116753830|ref|YP_842948.1| - 5.8e-14 51.3 2.0 9.7e-14 50.5 1.4 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|116753830|ref|YP_842948.1| - 7.5e-11 42.0 0.0 1.2e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_8 PF08022.7 gi|116753830|ref|YP_842948.1| - 0.0037 17.1 0.0 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 FAD-binding domain TrkH PF02386.11 gi|116753831|ref|YP_842949.1| - 3.2e-58 197.0 22.9 9.8e-58 195.4 10.4 2.4 2 0 0 2 2 2 2 Cation transport protein DDE_Tnp_1_5 PF13737.1 gi|116753832|ref|YP_842950.1| - 1.2e-28 99.4 0.0 2.9e-27 95.0 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|116753832|ref|YP_842950.1| - 1.9e-20 73.3 0.4 4.5e-20 72.1 0.2 1.6 1 1 0 1 1 1 1 Transposase DDE domain rve PF00665.21 gi|116753832|ref|YP_842950.1| - 0.12 12.4 0.1 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain NMT1_2 PF13379.1 gi|116753833|ref|YP_842951.1| - 1.5e-46 158.8 0.0 1.9e-46 158.5 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|116753833|ref|YP_842951.1| - 3e-20 72.7 0.0 4.3e-20 72.2 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|116753833|ref|YP_842951.1| - 0.00043 19.7 0.0 0.00058 19.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein VitK2_biosynth PF02621.9 gi|116753833|ref|YP_842951.1| - 0.094 11.8 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Menaquinone biosynthesis BPD_transp_1 PF00528.17 gi|116753834|ref|YP_842952.1| - 2.7e-19 69.4 13.9 4.2e-19 68.7 9.7 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Adenine_deam_C PF13382.1 gi|116753835|ref|YP_842953.1| - 9.3e-67 223.4 0.1 1.8e-66 222.4 0.1 1.5 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|116753835|ref|YP_842953.1| - 4.7e-34 118.5 1.3 1.5e-31 110.2 0.9 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|116753835|ref|YP_842953.1| - 4.8e-14 53.0 4.3 8.3e-12 45.7 0.3 2.3 1 1 1 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|116753835|ref|YP_842953.1| - 4e-06 26.5 0.0 2e-05 24.3 0.0 2.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|116753835|ref|YP_842953.1| - 8.6e-05 21.9 0.8 0.00071 18.8 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase family Radical_SAM PF04055.16 gi|116753836|ref|YP_842954.1| - 3.1e-18 66.5 0.7 2e-14 54.0 0.2 2.3 2 0 0 2 2 2 2 Radical SAM superfamily B12-binding PF02310.14 gi|116753836|ref|YP_842954.1| - 4.5e-14 52.3 0.0 8.2e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain BH4 PF02180.12 gi|116753837|ref|YP_842955.1| - 0.067 12.7 1.9 0.08 12.4 0.2 1.9 2 0 0 2 2 2 0 Bcl-2 homology region 4 FCH PF00611.18 gi|116753837|ref|YP_842955.1| - 0.13 12.4 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain GXGXG PF01493.14 gi|116753838|ref|YP_842956.1| - 4.7e-26 91.0 9.6 1.4e-21 76.4 2.6 2.6 1 1 1 2 2 2 2 GXGXG motif DUF342 PF03961.8 gi|116753838|ref|YP_842956.1| - 0.73 8.1 4.5 1.6 7.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF342) Glycos_transf_1 PF00534.15 gi|116753839|ref|YP_842957.1| - 1.2e-32 112.7 0.0 1.8e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|116753839|ref|YP_842957.1| - 1.3e-17 64.2 0.1 2.5e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|116753839|ref|YP_842957.1| - 5.9e-17 61.9 0.0 1.5e-16 60.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|116753839|ref|YP_842957.1| - 1e-13 51.7 0.1 3e-13 50.1 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|116753839|ref|YP_842957.1| - 3.3e-06 27.2 0.0 6.3e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|116753840|ref|YP_842958.1| - 5.8e-28 97.6 0.0 8.3e-28 97.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|116753840|ref|YP_842958.1| - 6.7e-13 48.9 0.0 9.4e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|116753840|ref|YP_842958.1| - 0.0002 20.5 0.0 0.00027 20.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Peripla_BP_2 PF01497.13 gi|116753841|ref|YP_842959.1| - 1.8e-26 92.7 0.0 5.4e-26 91.1 0.0 1.7 1 1 0 1 1 1 1 Periplasmic binding protein ABC_tran PF00005.22 gi|116753842|ref|YP_842960.1| - 2.1e-33 115.5 0.0 3.2e-33 114.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116753842|ref|YP_842960.1| - 3.5e-16 60.0 0.4 3.6e-11 43.5 0.0 2.4 2 1 1 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|116753842|ref|YP_842960.1| - 0.002 18.5 0.0 0.003 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|116753842|ref|YP_842960.1| - 0.0021 17.5 0.2 0.63 9.4 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|116753842|ref|YP_842960.1| - 0.004 16.4 0.0 0.016 14.4 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|116753842|ref|YP_842960.1| - 0.0062 16.0 0.0 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SbcCD_C PF13558.1 gi|116753842|ref|YP_842960.1| - 0.0097 15.8 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|116753842|ref|YP_842960.1| - 0.026 14.4 0.6 0.25 11.2 0.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|116753842|ref|YP_842960.1| - 0.043 13.3 0.1 0.078 12.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|116753842|ref|YP_842960.1| - 0.058 12.9 0.0 0.45 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|116753842|ref|YP_842960.1| - 0.065 13.3 0.9 1 9.5 0.6 2.4 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|116753842|ref|YP_842960.1| - 0.066 12.9 0.2 0.31 10.7 0.1 2.0 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|116753842|ref|YP_842960.1| - 0.07 12.1 0.0 1.8 7.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.1 gi|116753842|ref|YP_842960.1| - 0.2 11.5 1.1 0.84 9.5 0.8 2.0 1 1 0 1 1 1 0 AAA ATPase domain ABC2_membrane PF01061.19 gi|116753843|ref|YP_842961.1| - 4.5e-24 84.7 19.9 4.5e-24 84.7 13.8 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|116753843|ref|YP_842961.1| - 1.1e-10 41.1 25.5 1.1e-10 41.1 17.6 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|116753843|ref|YP_842961.1| - 0.21 10.4 25.8 0.052 12.4 13.9 2.2 2 1 0 2 2 2 0 ABC-2 family transporter protein AAA PF00004.24 gi|116753844|ref|YP_842962.1| - 2.1e-98 325.6 0.0 3.2e-48 163.2 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|116753844|ref|YP_842962.1| - 4.5e-27 93.8 0.7 1.4e-26 92.2 0.2 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|116753844|ref|YP_842962.1| - 7.3e-17 61.9 0.3 3.1e-07 30.5 0.0 3.3 3 0 0 3 3 3 2 AAA ATPase domain AAA_2 PF07724.9 gi|116753844|ref|YP_842962.1| - 1.9e-15 57.2 0.0 3.2e-07 30.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|116753844|ref|YP_842962.1| - 3.4e-15 55.7 0.0 7e-08 31.8 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|116753844|ref|YP_842962.1| - 7.7e-14 51.9 0.5 0.0018 18.3 0.0 4.0 2 2 2 4 4 4 3 AAA domain AAA_5 PF07728.9 gi|116753844|ref|YP_842962.1| - 2.3e-13 50.0 0.3 8.1e-06 25.6 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|116753844|ref|YP_842962.1| - 1.5e-12 47.5 0.0 1e-06 28.6 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|116753844|ref|YP_842962.1| - 1.3e-11 45.3 0.0 0.0001 23.1 0.0 2.9 2 1 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|116753844|ref|YP_842962.1| - 2.6e-11 42.9 0.0 7.2e-11 41.5 0.0 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 TIP49 PF06068.8 gi|116753844|ref|YP_842962.1| - 6.1e-11 41.6 0.3 0.00031 19.5 0.0 2.6 3 0 0 3 3 3 2 TIP49 C-terminus AAA_14 PF13173.1 gi|116753844|ref|YP_842962.1| - 6.6e-10 38.9 0.0 0.0012 18.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|116753844|ref|YP_842962.1| - 2.2e-09 36.9 0.1 0.0018 17.7 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|116753844|ref|YP_842962.1| - 4.4e-09 35.9 0.8 0.0027 17.4 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|116753844|ref|YP_842962.1| - 6.3e-09 35.2 0.0 0.0012 17.9 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|116753844|ref|YP_842962.1| - 8.7e-09 35.7 0.0 0.00095 19.4 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.1 gi|116753844|ref|YP_842962.1| - 2.2e-08 34.2 0.1 0.0026 17.7 0.0 2.7 2 1 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|116753844|ref|YP_842962.1| - 5.3e-08 33.0 0.0 0.01 16.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.1 gi|116753844|ref|YP_842962.1| - 1.6e-07 30.9 4.8 0.096 12.0 0.2 3.9 2 2 1 3 3 3 3 AAA domain Mg_chelatase PF01078.16 gi|116753844|ref|YP_842962.1| - 1.9e-07 30.4 0.1 0.016 14.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|116753844|ref|YP_842962.1| - 6.5e-07 29.4 0.0 0.05 13.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.11 gi|116753844|ref|YP_842962.1| - 6.8e-07 28.7 0.3 0.076 12.2 0.0 3.6 4 0 0 4 4 4 2 PhoH-like protein AAA_3 PF07726.6 gi|116753844|ref|YP_842962.1| - 1.4e-06 27.9 0.0 0.029 13.9 0.0 2.7 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|116753844|ref|YP_842962.1| - 1.7e-06 27.8 0.0 0.1 12.2 0.0 3.2 2 1 0 2 2 2 2 Bacterial dnaA protein NACHT PF05729.7 gi|116753844|ref|YP_842962.1| - 1.9e-06 27.6 0.3 0.12 12.0 0.0 3.7 3 1 1 4 4 4 2 NACHT domain Sigma54_activat PF00158.21 gi|116753844|ref|YP_842962.1| - 2e-06 27.3 0.1 0.11 11.9 0.0 3.4 3 1 0 3 3 2 2 Sigma-54 interaction domain KaiC PF06745.8 gi|116753844|ref|YP_842962.1| - 8.4e-06 25.0 0.3 0.67 9.0 0.0 3.5 2 1 1 3 3 3 2 KaiC Arch_ATPase PF01637.13 gi|116753844|ref|YP_842962.1| - 1.3e-05 25.0 0.0 0.49 10.0 0.0 3.1 2 1 1 3 3 3 2 Archaeal ATPase ABC_tran PF00005.22 gi|116753844|ref|YP_842962.1| - 2.9e-05 24.3 0.0 0.29 11.4 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.1 gi|116753844|ref|YP_842962.1| - 4.4e-05 23.1 0.5 0.063 12.8 0.1 2.4 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|116753844|ref|YP_842962.1| - 5.2e-05 22.3 0.0 0.18 10.7 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|116753844|ref|YP_842962.1| - 8.2e-05 22.2 0.0 0.14 11.7 0.0 2.6 2 1 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|116753844|ref|YP_842962.1| - 0.00016 21.2 0.0 0.44 10.1 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 DUF815 PF05673.8 gi|116753844|ref|YP_842962.1| - 0.00016 20.6 0.0 0.1 11.5 0.0 2.7 3 0 0 3 3 2 1 Protein of unknown function (DUF815) Parvo_NS1 PF01057.12 gi|116753844|ref|YP_842962.1| - 0.00023 20.1 0.0 0.3 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|116753844|ref|YP_842962.1| - 0.00029 19.7 0.0 0.51 9.1 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.1 gi|116753844|ref|YP_842962.1| - 0.00068 19.2 0.0 1.1 8.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|116753844|ref|YP_842962.1| - 0.0012 17.7 0.0 0.61 8.9 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|116753844|ref|YP_842962.1| - 0.0016 18.1 1.0 1.3 8.6 0.0 3.5 2 2 1 3 3 3 1 NTPase AFG1_ATPase PF03969.11 gi|116753844|ref|YP_842962.1| - 0.002 17.0 0.0 1.6 7.4 0.0 2.4 2 0 0 2 2 2 2 AFG1-like ATPase Viral_helicase1 PF01443.13 gi|116753844|ref|YP_842962.1| - 0.0021 17.6 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase ResIII PF04851.10 gi|116753844|ref|YP_842962.1| - 0.003 17.4 0.0 2.4 7.9 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Vps4_C PF09336.5 gi|116753844|ref|YP_842962.1| - 0.0063 16.3 0.4 3.4 7.6 0.0 2.9 3 0 0 3 3 2 0 Vps4 C terminal oligomerisation domain KAP_NTPase PF07693.9 gi|116753844|ref|YP_842962.1| - 0.0075 15.2 0.0 0.96 8.3 0.0 2.5 2 1 0 2 2 2 1 KAP family P-loop domain SKI PF01202.17 gi|116753844|ref|YP_842962.1| - 0.011 15.6 0.1 6.6 6.5 0.0 2.9 3 0 0 3 3 2 0 Shikimate kinase CPT PF07931.7 gi|116753844|ref|YP_842962.1| - 0.015 14.9 0.0 4.7 6.8 0.0 2.6 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein KTI12 PF08433.5 gi|116753844|ref|YP_842962.1| - 0.019 14.1 0.2 3 6.9 0.0 2.7 2 1 0 2 2 2 0 Chromatin associated protein KTI12 DAP3 PF10236.4 gi|116753844|ref|YP_842962.1| - 0.054 12.4 0.0 2.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 SRPRB PF09439.5 gi|116753844|ref|YP_842962.1| - 0.056 12.6 0.0 5.4 6.1 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Torsin PF06309.6 gi|116753844|ref|YP_842962.1| - 0.071 13.0 0.0 5.3 6.9 0.0 2.4 2 0 0 2 2 2 0 Torsin Guanylate_kin PF00625.16 gi|116753844|ref|YP_842962.1| - 0.078 12.4 0.1 39 3.6 0.0 3.5 2 2 1 3 3 3 0 Guanylate kinase ATP-synt_ab PF00006.20 gi|116753844|ref|YP_842962.1| - 0.08 12.4 0.0 3.3 7.1 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|116753844|ref|YP_842962.1| - 0.081 12.4 0.0 12 5.4 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain cobW PF02492.14 gi|116753844|ref|YP_842962.1| - 0.098 12.0 0.3 13 5.1 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PIF1 PF05970.9 gi|116753844|ref|YP_842962.1| - 0.16 10.8 0.0 7.7 5.3 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase Zot PF05707.7 gi|116753844|ref|YP_842962.1| - 0.27 10.6 1.3 85 2.5 0.1 4.0 2 2 1 3 3 3 0 Zonular occludens toxin (Zot) DeoC PF01791.4 gi|116753845|ref|YP_842963.1| - 3.7e-54 183.5 0.0 4.3e-54 183.2 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|116753845|ref|YP_842963.1| - 0.0032 16.9 0.0 0.0036 16.7 0.0 1.3 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PEP_mutase PF13714.1 gi|116753845|ref|YP_842963.1| - 0.076 12.2 0.4 12 5.0 0.0 2.4 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase DEAD_assoc PF08494.6 gi|116753846|ref|YP_842964.1| - 4.9e-53 179.6 0.1 1e-52 178.6 0.1 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|116753846|ref|YP_842964.1| - 6.6e-29 100.5 0.0 3e-28 98.4 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|116753846|ref|YP_842964.1| - 1.2e-14 53.9 0.0 2e-13 50.0 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|116753846|ref|YP_842964.1| - 2.2e-05 24.3 0.0 4.3e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|116753846|ref|YP_842964.1| - 0.082 13.0 0.6 1.1 9.4 0.1 3.0 2 1 0 2 2 2 0 AAA domain KcnmB2_inactiv PF09303.5 gi|116753846|ref|YP_842964.1| - 0.31 10.8 2.9 1.7 8.5 0.0 2.9 3 0 0 3 3 3 0 KCNMB2, ball and chain domain Metallophos PF00149.23 gi|116753847|ref|YP_842965.1| - 0.00051 19.4 0.0 0.0011 18.4 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase UPF0051 PF01458.12 gi|116753848|ref|YP_842966.1| - 1.4e-54 184.9 0.0 1.7e-54 184.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|116753849|ref|YP_842967.1| - 9.7e-27 93.9 0.0 1.4e-26 93.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116753849|ref|YP_842967.1| - 1.1e-10 41.9 0.5 0.00041 20.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|116753849|ref|YP_842967.1| - 8.4e-05 21.8 0.2 0.3 10.2 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|116753849|ref|YP_842967.1| - 0.0017 17.8 0.0 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|116753849|ref|YP_842967.1| - 0.0037 17.6 0.7 0.0068 16.7 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|116753849|ref|YP_842967.1| - 0.0068 16.3 0.0 0.13 12.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|116753849|ref|YP_842967.1| - 0.01 16.0 0.1 0.038 14.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|116753849|ref|YP_842967.1| - 0.01 15.5 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|116753849|ref|YP_842967.1| - 0.011 16.5 0.0 0.12 13.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|116753849|ref|YP_842967.1| - 0.019 14.3 0.0 0.12 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|116753849|ref|YP_842967.1| - 0.024 13.8 0.0 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|116753849|ref|YP_842967.1| - 0.034 14.2 0.1 0.38 10.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|116753849|ref|YP_842967.1| - 0.039 13.0 0.0 1.8 7.6 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_13 PF13166.1 gi|116753849|ref|YP_842967.1| - 0.042 12.3 0.2 0.26 9.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|116753849|ref|YP_842967.1| - 0.048 13.6 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|116753849|ref|YP_842967.1| - 0.072 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|116753849|ref|YP_842967.1| - 0.077 12.3 0.0 0.15 11.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|116753849|ref|YP_842967.1| - 0.094 12.6 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.1 gi|116753849|ref|YP_842967.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|116753849|ref|YP_842967.1| - 0.16 11.3 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein SprB PF13573.1 gi|116753850|ref|YP_842968.1| - 0.0004 19.9 0.9 0.0012 18.3 0.6 1.8 1 0 0 1 1 1 1 SprB repeat DUF1533 PF07550.6 gi|116753850|ref|YP_842968.1| - 0.014 15.3 0.1 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1533) BiPBP_C PF06832.7 gi|116753850|ref|YP_842968.1| - 0.054 13.4 0.0 0.084 12.8 0.0 1.3 1 1 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family TIR_2 PF13676.1 gi|116753851|ref|YP_842969.1| - 9.1e-11 41.8 0.0 1.6e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 TIR domain CpXC PF14353.1 gi|116753851|ref|YP_842969.1| - 0.042 13.8 0.8 0.33 10.9 0.8 2.0 1 1 1 2 2 2 0 CpXC protein TF_Zn_Ribbon PF08271.7 gi|116753851|ref|YP_842969.1| - 0.047 13.0 0.5 0.11 11.8 0.4 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding DHQS PF01959.11 gi|116753852|ref|YP_842970.1| - 1.5e-157 523.8 2.2 1.7e-157 523.6 1.6 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) OapA PF04225.7 gi|116753852|ref|YP_842970.1| - 0.0046 16.8 0.0 1.6 8.7 0.0 2.6 3 0 0 3 3 3 2 Opacity-associated protein A LysM-like domain Response_reg PF00072.19 gi|116753852|ref|YP_842970.1| - 0.033 14.2 0.0 3.4 7.7 0.0 2.8 2 1 0 2 2 2 0 Response regulator receiver domain Peripla_BP_1 PF00532.16 gi|116753852|ref|YP_842970.1| - 0.056 12.6 0.0 0.086 12.0 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Hint PF01079.15 gi|116753852|ref|YP_842970.1| - 0.15 11.2 0.3 12 5.0 0.0 2.6 3 0 0 3 3 3 0 Hint module DHquinase_I PF01487.10 gi|116753853|ref|YP_842971.1| - 5.1e-50 170.2 0.0 6e-50 169.9 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase PEP-utilisers_N PF05524.8 gi|116753853|ref|YP_842971.1| - 0.013 15.3 0.1 0.024 14.4 0.1 1.4 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal SOR_SNZ PF01680.12 gi|116753853|ref|YP_842971.1| - 0.051 13.1 0.0 0.079 12.5 0.0 1.3 1 0 0 1 1 1 0 SOR/SNZ family Aminotran_1_2 PF00155.16 gi|116753855|ref|YP_842973.1| - 8e-65 219.1 0.0 9e-65 218.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|116753855|ref|YP_842973.1| - 1.4e-12 47.3 0.1 2.2e-12 46.7 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|116753855|ref|YP_842973.1| - 3.6e-08 32.1 0.0 5.2e-08 31.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|116753855|ref|YP_842973.1| - 9e-08 31.2 0.0 1.4e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|116753855|ref|YP_842973.1| - 1.8e-06 27.3 0.0 2.7e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_3 PF00202.16 gi|116753855|ref|YP_842973.1| - 0.04 12.7 0.0 0.068 12.0 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III RHH_1 PF01402.16 gi|116753856|ref|YP_842974.1| - 2.4e-10 39.8 0.6 4.3e-10 39.0 0.4 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|116753856|ref|YP_842974.1| - 0.00054 19.6 0.1 0.001 18.7 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain ThiF PF00899.16 gi|116753857|ref|YP_842975.1| - 5.3e-40 136.3 0.2 8.8e-40 135.6 0.1 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|116753857|ref|YP_842975.1| - 1.6e-21 75.6 0.1 2.8e-21 74.8 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Polysacc_synt_2 PF02719.10 gi|116753857|ref|YP_842975.1| - 0.022 13.6 0.0 0.23 10.3 0.0 2.0 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein Shikimate_DH PF01488.15 gi|116753857|ref|YP_842975.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|116753857|ref|YP_842975.1| - 0.12 11.8 0.1 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PhosphMutase PF10143.4 gi|116753858|ref|YP_842976.1| - 1.3e-54 184.4 0.0 2.6e-54 183.4 0.0 1.5 2 0 0 2 2 2 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|116753858|ref|YP_842976.1| - 4.4e-47 160.6 0.0 5.2e-47 160.3 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily MCR_C PF04609.7 gi|116753859|ref|YP_842977.1| - 2e-42 144.8 0.9 5.3e-38 130.3 0.1 3.0 1 1 1 2 2 2 2 Methyl-coenzyme M reductase operon protein C DUF460 PF04312.8 gi|116753860|ref|YP_842978.1| - 8.1e-51 171.1 0.1 2.3e-50 169.6 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF460) IncA PF04156.9 gi|116753860|ref|YP_842978.1| - 5.5e-06 26.1 5.4 5.5e-06 26.1 3.7 2.1 2 0 0 2 2 2 1 IncA protein TPR_MLP1_2 PF07926.7 gi|116753860|ref|YP_842978.1| - 0.00022 21.0 0.2 0.0034 17.1 0.0 2.8 2 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein DUF3450 PF11932.3 gi|116753860|ref|YP_842978.1| - 0.0068 15.6 0.7 0.0068 15.6 0.5 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3450) DUF536 PF04394.9 gi|116753860|ref|YP_842978.1| - 0.032 13.9 3.1 1.3 8.8 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function, DUF536 Bap31 PF05529.7 gi|116753860|ref|YP_842978.1| - 0.079 12.4 4.3 0.066 12.6 0.3 2.2 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like AAA_13 PF13166.1 gi|116753860|ref|YP_842978.1| - 0.095 11.1 2.8 0.15 10.5 1.9 1.2 1 0 0 1 1 1 0 AAA domain Herpes_UL6 PF01763.11 gi|116753860|ref|YP_842978.1| - 0.28 9.3 4.1 0.46 8.5 2.8 1.3 1 0 0 1 1 1 0 Herpesvirus UL6 like Fib_alpha PF08702.5 gi|116753860|ref|YP_842978.1| - 0.31 11.1 3.5 1.2 9.3 2.5 2.0 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF641 PF04859.7 gi|116753860|ref|YP_842978.1| - 0.81 9.4 13.4 0.087 12.5 1.1 3.0 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) DUF429 PF04250.8 gi|116753860|ref|YP_842978.1| - 1.4 8.0 6.7 1.2 8.3 0.0 3.2 4 0 0 4 4 3 0 Protein of unknown function (DUF429) TBPIP PF07106.8 gi|116753860|ref|YP_842978.1| - 1.5 8.3 16.3 0.11 12.0 5.6 2.9 3 1 0 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TMF_DNA_bd PF12329.3 gi|116753860|ref|YP_842978.1| - 1.6 8.6 12.9 0.066 13.0 1.8 3.1 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding V_ATPase_I PF01496.14 gi|116753860|ref|YP_842978.1| - 1.7 6.4 7.3 0.2 9.4 2.1 1.5 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family DUF342 PF03961.8 gi|116753860|ref|YP_842978.1| - 1.9 6.8 6.2 3.7 5.8 4.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Atg14 PF10186.4 gi|116753860|ref|YP_842978.1| - 2.7 6.8 17.8 0.0067 15.4 4.0 2.1 1 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 COG2 PF06148.6 gi|116753860|ref|YP_842978.1| - 2.8 7.8 7.0 2.8 7.8 1.4 3.0 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 OmpH PF03938.9 gi|116753860|ref|YP_842978.1| - 6.9 6.5 10.1 0.9 9.4 2.3 2.5 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) RIO1 PF01163.17 gi|116753861|ref|YP_842979.1| - 6.4e-41 139.7 0.1 8.9e-41 139.3 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|116753861|ref|YP_842979.1| - 8.7e-23 80.2 0.0 1.5e-22 79.4 0.0 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|116753861|ref|YP_842979.1| - 1.1e-06 28.5 4.3 0.0078 15.9 0.4 3.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family HTH_IclR PF09339.5 gi|116753861|ref|YP_842979.1| - 0.0014 18.1 0.1 0.019 14.5 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|116753861|ref|YP_842979.1| - 0.011 15.4 0.0 0.19 11.4 0.0 2.4 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Iso_dh PF00180.15 gi|116753862|ref|YP_842980.1| - 5.2e-69 232.8 0.0 8.3e-69 232.1 0.0 1.3 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase dTMP_synthase PF02593.9 gi|116753863|ref|YP_842981.1| - 6.9e-70 234.7 0.0 7.8e-70 234.5 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DapB_N PF01113.15 gi|116753863|ref|YP_842981.1| - 0.028 14.3 0.0 0.077 12.9 0.0 1.8 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus KH_3 PF13014.1 gi|116753863|ref|YP_842981.1| - 0.061 12.9 0.1 0.42 10.3 0.0 2.2 2 0 0 2 2 2 0 KH domain B5 PF03484.10 gi|116753863|ref|YP_842981.1| - 0.12 12.1 0.1 0.45 10.3 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetase B5 domain DUF2196 PF09962.4 gi|116753863|ref|YP_842981.1| - 1.8 8.3 4.7 2.6 7.8 0.2 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2196) Fumerase PF05681.9 gi|116753864|ref|YP_842982.1| - 1.2e-82 277.0 0.0 1.3e-82 276.9 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.7 gi|116753865|ref|YP_842983.1| - 2.9e-36 124.5 0.0 3.4e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus DUF434 PF04256.7 gi|116753866|ref|YP_842984.1| - 7.5e-05 22.0 0.3 0.00014 21.1 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) ATP-grasp_5 PF13549.1 gi|116753867|ref|YP_842985.1| - 1.2e-74 250.3 0.1 1.6e-74 249.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|116753867|ref|YP_842985.1| - 1.1e-41 141.6 0.1 1.1e-41 141.6 0.1 2.1 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|116753867|ref|YP_842985.1| - 1e-24 86.9 0.2 4.1e-24 84.9 0.1 2.2 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|116753867|ref|YP_842985.1| - 5.5e-16 58.8 0.1 2.7e-15 56.6 0.0 2.3 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|116753867|ref|YP_842985.1| - 0.0094 15.3 0.1 0.018 14.4 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|116753867|ref|YP_842985.1| - 0.022 15.2 0.0 0.089 13.3 0.0 2.1 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF134 PF02001.11 gi|116753869|ref|YP_842987.1| - 4.4e-21 74.7 0.0 6.7e-21 74.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|116753869|ref|YP_842987.1| - 0.00035 19.9 1.5 0.00043 19.6 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|116753869|ref|YP_842987.1| - 0.28 10.5 2.8 0.57 9.5 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 ParA PF10609.4 gi|116753870|ref|YP_842988.1| - 4.3e-33 113.0 0.2 7.7e-33 112.2 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|116753870|ref|YP_842988.1| - 2.3e-20 72.8 0.1 3.5e-20 72.2 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|116753870|ref|YP_842988.1| - 2.1e-10 40.1 0.0 3.1e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|116753870|ref|YP_842988.1| - 1.2e-08 35.0 0.0 1.4e-06 28.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|116753870|ref|YP_842988.1| - 2.6e-05 23.4 3.2 0.00014 21.0 0.7 2.4 3 0 0 3 3 3 1 Anion-transporting ATPase APS_kinase PF01583.15 gi|116753870|ref|YP_842988.1| - 0.0012 18.4 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_26 PF13500.1 gi|116753870|ref|YP_842988.1| - 0.0028 17.2 0.0 0.53 9.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|116753870|ref|YP_842988.1| - 0.003 16.3 0.1 0.0052 15.5 0.1 1.3 1 0 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|116753870|ref|YP_842988.1| - 0.0031 17.1 0.1 0.0073 16.0 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Desulfoferrod_N PF06397.7 gi|116753870|ref|YP_842988.1| - 0.0048 16.2 0.4 0.0092 15.3 0.3 1.4 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Fer4_NifH PF00142.13 gi|116753870|ref|YP_842988.1| - 0.013 14.7 0.1 0.03 13.4 0.1 1.6 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.11 gi|116753870|ref|YP_842988.1| - 0.014 14.6 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein SRP54 PF00448.17 gi|116753870|ref|YP_842988.1| - 0.022 14.2 0.1 0.037 13.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF1610 PF07754.6 gi|116753870|ref|YP_842988.1| - 0.051 13.6 0.2 0.15 12.1 0.3 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF1610) AAA_19 PF13245.1 gi|116753870|ref|YP_842988.1| - 0.059 13.1 0.1 0.16 11.7 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain KTI12 PF08433.5 gi|116753870|ref|YP_842988.1| - 0.073 12.2 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 zf-ribbon_3 PF13248.1 gi|116753870|ref|YP_842988.1| - 0.076 12.2 0.3 0.15 11.2 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|116753870|ref|YP_842988.1| - 0.083 12.6 0.2 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|116753870|ref|YP_842988.1| - 0.11 11.8 0.1 0.25 10.6 0.1 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding LpxK PF02606.9 gi|116753870|ref|YP_842988.1| - 0.13 11.2 0.2 0.21 10.5 0.1 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase YhjQ PF06564.7 gi|116753870|ref|YP_842988.1| - 0.14 11.4 0.1 0.39 10.0 0.0 1.7 2 0 0 2 2 2 0 YhjQ protein Radical_SAM PF04055.16 gi|116753871|ref|YP_842989.1| - 4.2e-31 108.3 0.0 6.4e-31 107.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|116753871|ref|YP_842989.1| - 1.4e-06 28.2 0.5 6.7e-05 22.7 0.1 3.4 2 2 1 3 3 3 1 B12 binding domain Nitro_FeMo-Co PF02579.12 gi|116753872|ref|YP_842990.1| - 5.1e-25 87.3 0.0 6.1e-25 87.1 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.12 gi|116753873|ref|YP_842991.1| - 2.7e-24 85.0 0.0 3.7e-24 84.6 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor AlaDh_PNT_C PF01262.16 gi|116753873|ref|YP_842991.1| - 1.5 8.3 4.6 13 5.3 1.5 2.1 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lactamase_B PF00753.22 gi|116753874|ref|YP_842992.1| - 2.9e-13 49.9 0.4 5.3e-13 49.0 0.3 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|116753874|ref|YP_842992.1| - 6.3e-08 32.4 0.0 2.5e-07 30.4 0.0 2.0 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|116753874|ref|YP_842992.1| - 0.11 12.2 0.1 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Radical_SAM PF04055.16 gi|116753875|ref|YP_842993.1| - 6.1e-12 46.0 0.0 8.4e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Bile_Hydr_Trans PF04775.9 gi|116753876|ref|YP_842994.1| - 0.07 12.8 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Acyl-CoA thioester hydrolase/BAAT N-terminal region CbiA PF01656.18 gi|116753877|ref|YP_842995.1| - 3e-32 111.6 0.0 3.8e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|116753877|ref|YP_842995.1| - 1.2e-11 43.6 12.2 1.2e-06 27.8 1.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116753877|ref|YP_842995.1| - 1.6e-08 34.7 6.6 0.00024 21.4 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116753877|ref|YP_842995.1| - 5.8e-07 29.0 16.5 0.00075 19.2 2.4 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116753877|ref|YP_842995.1| - 1.2e-06 28.0 12.3 0.0038 17.0 1.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|116753877|ref|YP_842995.1| - 1.6e-06 27.9 3.4 0.006 16.5 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116753877|ref|YP_842995.1| - 3.7e-06 26.6 12.0 7e-06 25.7 7.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116753877|ref|YP_842995.1| - 4.6e-06 26.7 6.8 0.0029 17.8 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116753877|ref|YP_842995.1| - 9.8e-06 26.0 8.5 0.011 16.2 0.1 2.7 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|116753877|ref|YP_842995.1| - 1e-05 25.2 11.0 3.8e-05 23.4 7.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|116753877|ref|YP_842995.1| - 0.0046 16.6 1.3 0.044 13.5 0.1 2.5 2 1 0 2 2 2 1 Part of AAA domain Fer4_16 PF13484.1 gi|116753877|ref|YP_842995.1| - 0.0056 17.3 11.0 0.15 12.8 1.7 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain ArsA_ATPase PF02374.10 gi|116753877|ref|YP_842995.1| - 0.011 14.8 2.8 0.022 13.8 2.0 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_25 PF13481.1 gi|116753877|ref|YP_842995.1| - 0.013 14.9 0.1 0.051 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|116753877|ref|YP_842995.1| - 0.017 15.1 0.0 0.054 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|116753877|ref|YP_842995.1| - 0.025 14.9 0.0 0.036 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|116753877|ref|YP_842995.1| - 0.045 13.8 0.0 0.19 11.8 0.0 2.1 3 0 0 3 3 2 0 AAA domain AAA_24 PF13479.1 gi|116753877|ref|YP_842995.1| - 0.064 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zot PF05707.7 gi|116753877|ref|YP_842995.1| - 0.071 12.5 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) NB-ARC PF00931.17 gi|116753877|ref|YP_842995.1| - 0.081 11.7 1.0 2 7.2 0.3 2.2 2 0 0 2 2 2 0 NB-ARC domain Miro PF08477.8 gi|116753877|ref|YP_842995.1| - 0.083 13.3 0.4 0.17 12.3 0.3 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_17 PF13207.1 gi|116753877|ref|YP_842995.1| - 0.095 13.5 0.5 0.55 11.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain Fer4_3 PF12798.2 gi|116753877|ref|YP_842995.1| - 0.16 12.5 20.0 0.1 13.2 2.0 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|116753877|ref|YP_842995.1| - 0.21 11.9 13.2 1.3 9.3 3.0 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|116753877|ref|YP_842995.1| - 0.24 11.8 18.9 0.64 10.5 2.7 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|116753877|ref|YP_842995.1| - 4 7.8 16.9 3.3 8.1 3.1 2.8 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|116753877|ref|YP_842995.1| - 6.1 7.3 17.3 3.1 8.2 2.9 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain CbiA PF01656.18 gi|116753878|ref|YP_842996.1| - 1.2e-23 83.5 0.0 1.6e-23 83.1 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_6 PF12837.2 gi|116753878|ref|YP_842996.1| - 5.3e-14 51.3 13.7 7.6e-07 28.7 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|116753878|ref|YP_842996.1| - 8.5e-14 50.4 13.3 4.3e-07 29.2 1.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116753878|ref|YP_842996.1| - 4.9e-10 39.6 36.2 1.1e-06 28.9 9.4 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116753878|ref|YP_842996.1| - 3.1e-08 33.2 7.3 7e-08 32.1 5.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|116753878|ref|YP_842996.1| - 3.2e-08 33.3 10.3 6.2e-08 32.3 7.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116753878|ref|YP_842996.1| - 1.2e-07 32.3 5.0 0.0015 19.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|116753878|ref|YP_842996.1| - 2.8e-07 30.0 14.6 0.0011 18.7 2.1 2.7 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|116753878|ref|YP_842996.1| - 7.1e-06 26.1 24.9 2.5e-05 24.4 8.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116753878|ref|YP_842996.1| - 8.4e-05 22.8 6.2 0.043 14.1 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|116753878|ref|YP_842996.1| - 9.6e-05 22.4 13.4 0.063 13.6 1.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|116753878|ref|YP_842996.1| - 0.00022 21.1 13.4 0.014 15.4 9.7 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain ParA PF10609.4 gi|116753878|ref|YP_842996.1| - 0.0018 18.0 0.0 0.0057 16.5 0.0 1.8 2 0 0 2 2 2 1 ParA/MinD ATPase like Fer4_18 PF13746.1 gi|116753878|ref|YP_842996.1| - 0.0027 18.0 11.7 0.071 13.5 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|116753878|ref|YP_842996.1| - 0.021 15.3 6.1 0.021 15.3 4.3 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain AAA_25 PF13481.1 gi|116753878|ref|YP_842996.1| - 0.042 13.2 0.1 0.34 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Fer4_NifH PF00142.13 gi|116753878|ref|YP_842996.1| - 0.11 11.6 0.1 0.78 8.8 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_15 PF13459.1 gi|116753878|ref|YP_842996.1| - 0.21 12.1 12.6 2.5 8.7 1.7 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain ZapA PF05164.8 gi|116753879|ref|YP_842997.1| - 0.08 12.9 0.1 0.095 12.6 0.1 1.1 1 0 0 1 1 1 0 Cell division protein ZapA Cation_efflux PF01545.16 gi|116753880|ref|YP_842998.1| - 2.5e-46 158.0 10.0 3.1e-46 157.7 7.0 1.1 1 0 0 1 1 1 1 Cation efflux family Nitro_FeMo-Co PF02579.12 gi|116753880|ref|YP_842998.1| - 5.4e-14 52.0 0.0 9.7e-14 51.2 0.0 1.4 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Zip PF02535.17 gi|116753881|ref|YP_842999.1| - 7e-24 84.3 22.2 1.2e-19 70.4 6.1 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter MCR_alpha_N PF02745.10 gi|116753882|ref|YP_843000.1| - 2.1e-138 459.9 0.0 2.8e-138 459.5 0.0 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|116753882|ref|YP_843000.1| - 2.4e-67 224.7 2.5 4.7e-67 223.8 1.7 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain Atg31 PF09795.4 gi|116753882|ref|YP_843000.1| - 0.058 13.0 0.2 0.099 12.3 0.1 1.4 1 0 0 1 1 1 0 Autophagy-related protein 31 MCR_beta_N PF02783.10 gi|116753882|ref|YP_843000.1| - 0.13 11.7 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_gamma PF02240.11 gi|116753883|ref|YP_843001.1| - 2.6e-107 357.5 0.0 2.9e-107 357.4 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_D PF02505.9 gi|116753884|ref|YP_843002.1| - 4.4e-48 162.7 0.0 5e-48 162.5 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|116753885|ref|YP_843003.1| - 7.5e-127 421.8 7.3 1.1e-126 421.2 5.1 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|116753885|ref|YP_843003.1| - 3.1e-73 245.1 1.4 5.9e-73 244.2 0.9 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF1810 PF08837.6 gi|116753885|ref|YP_843003.1| - 0.14 11.7 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1810) Radical_SAM PF04055.16 gi|116753886|ref|YP_843004.1| - 1.4e-16 61.1 0.2 2.8e-16 60.1 0.1 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|116753886|ref|YP_843004.1| - 0.00062 19.8 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|116753886|ref|YP_843004.1| - 0.0015 18.8 0.0 0.0033 17.7 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|116753886|ref|YP_843004.1| - 0.0087 16.0 0.1 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rho_N PF07498.7 gi|116753886|ref|YP_843004.1| - 0.084 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Rho termination factor, N-terminal domain FKBP_C PF00254.23 gi|116753887|ref|YP_843005.1| - 2.8e-11 43.2 0.0 8.8e-11 41.6 0.0 2.0 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase ATP_bind_3 PF01171.15 gi|116753888|ref|YP_843006.1| - 1.4e-13 50.7 0.0 2.3e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|116753888|ref|YP_843006.1| - 2e-09 36.5 0.0 2.6e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|116753888|ref|YP_843006.1| - 3.4e-05 23.7 0.0 5.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.16 gi|116753888|ref|YP_843006.1| - 0.00013 21.5 0.0 0.0002 20.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|116753888|ref|YP_843006.1| - 0.0002 20.3 0.0 0.00028 19.8 0.0 1.1 1 0 0 1 1 1 1 NAD synthase ThiI PF02568.9 gi|116753888|ref|YP_843006.1| - 0.029 13.8 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|116753888|ref|YP_843006.1| - 0.033 13.4 0.2 0.085 12.1 0.0 1.8 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|116753888|ref|YP_843006.1| - 0.035 13.4 0.0 0.05 12.9 0.0 1.2 1 0 0 1 1 1 0 ATP-binding region Ribosomal_S14 PF00253.16 gi|116753888|ref|YP_843006.1| - 0.18 11.2 2.1 16 4.9 0.1 3.0 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e ABC_tran PF00005.22 gi|116753890|ref|YP_843008.1| - 1.3e-33 116.2 0.0 3.7e-33 114.7 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|116753890|ref|YP_843008.1| - 4.4e-19 69.5 0.2 1.3e-12 48.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|116753890|ref|YP_843008.1| - 7.5e-07 28.5 0.0 6e-06 25.6 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|116753890|ref|YP_843008.1| - 6.5e-06 25.4 0.0 0.00097 18.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|116753890|ref|YP_843008.1| - 0.00055 19.4 0.2 0.00055 19.4 0.1 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|116753890|ref|YP_843008.1| - 0.0021 17.9 0.1 0.023 14.6 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|116753890|ref|YP_843008.1| - 0.0063 16.8 0.0 0.01 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|116753890|ref|YP_843008.1| - 0.0078 15.3 0.0 0.13 11.3 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.1 gi|116753890|ref|YP_843008.1| - 0.0089 15.9 0.0 0.48 10.2 0.1 2.7 3 0 0 3 3 3 1 AAA domain DUF258 PF03193.11 gi|116753890|ref|YP_843008.1| - 0.012 14.8 0.0 0.024 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|116753890|ref|YP_843008.1| - 0.012 14.1 0.0 1.1 7.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|116753890|ref|YP_843008.1| - 0.044 13.3 0.1 0.86 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|116753890|ref|YP_843008.1| - 0.053 13.4 0.1 0.11 12.4 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|116753890|ref|YP_843008.1| - 0.11 11.8 0.1 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|116753890|ref|YP_843008.1| - 0.12 12.3 0.0 0.29 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|116753890|ref|YP_843008.1| - 0.12 12.5 0.0 1.7 8.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain BCA_ABC_TP_C PF12399.3 gi|116753890|ref|YP_843008.1| - 0.15 11.7 1.3 0.19 11.4 0.1 1.9 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter CbiQ PF02361.11 gi|116753891|ref|YP_843009.1| - 1.4e-31 109.7 10.7 2.2e-31 109.1 7.4 1.3 1 0 0 1 1 1 1 Cobalt transport protein DUF2198 PF09964.4 gi|116753891|ref|YP_843009.1| - 0.2 11.4 2.0 1.1 9.1 0.2 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2198) CbiN PF02553.10 gi|116753892|ref|YP_843010.1| - 9e-21 73.6 1.0 1.1e-20 73.4 0.7 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiM PF01891.11 gi|116753893|ref|YP_843011.1| - 4.8e-58 196.1 17.7 5.5e-58 195.9 12.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region TRAM PF01938.15 gi|116753894|ref|YP_843012.1| - 2e-14 53.1 0.8 2.3e-14 52.9 0.6 1.1 1 0 0 1 1 1 1 TRAM domain SapC PF07277.6 gi|116753896|ref|YP_843014.1| - 0.00096 18.5 0.1 0.72 9.1 0.0 2.1 2 0 0 2 2 2 2 SapC DEK_C PF08766.6 gi|116753896|ref|YP_843014.1| - 0.0087 15.8 9.6 15 5.4 0.2 4.2 2 2 2 4 4 4 0 DEK C terminal domain FANCI_S1 PF14675.1 gi|116753896|ref|YP_843014.1| - 0.052 12.8 0.1 7.5 5.8 0.0 2.1 2 0 0 2 2 2 0 FANCI solenoid 1 Reprolysin_4 PF13583.1 gi|116753896|ref|YP_843014.1| - 0.079 12.4 0.0 7.8 5.9 0.0 2.0 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Rho_N PF07498.7 gi|116753896|ref|YP_843014.1| - 0.081 12.6 14.9 14 5.5 0.2 4.8 4 1 0 4 4 4 0 Rho termination factor, N-terminal domain EURL PF06937.6 gi|116753896|ref|YP_843014.1| - 0.081 12.3 3.4 3.9 6.8 0.2 2.2 2 0 0 2 2 2 0 EURL protein Topoisom_I_N PF02919.10 gi|116753896|ref|YP_843014.1| - 0.11 11.7 1.5 8.3 5.6 0.1 2.0 2 0 0 2 2 2 0 Eukaryotic DNA topoisomerase I, DNA binding fragment DUF2552 PF10827.3 gi|116753896|ref|YP_843014.1| - 0.13 12.2 0.2 8.9 6.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2552) NAM-associated PF14303.1 gi|116753896|ref|YP_843014.1| - 0.33 11.2 6.4 4.6 7.5 0.1 2.0 2 0 0 2 2 2 0 No apical meristem-associated C-terminal domain Prok-TraM PF09228.5 gi|116753896|ref|YP_843014.1| - 0.4 10.8 7.2 7 6.8 0.6 2.8 2 2 0 2 2 2 0 Prokaryotic Transcriptional repressor TraM KxDL PF10241.4 gi|116753896|ref|YP_843014.1| - 0.63 9.9 7.4 6.2 6.7 0.6 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein MerR-DNA-bind PF09278.6 gi|116753896|ref|YP_843014.1| - 0.68 10.3 11.2 6.3 7.2 1.6 2.9 2 2 0 2 2 2 0 MerR, DNA binding Vps51 PF08700.6 gi|116753896|ref|YP_843014.1| - 1.5 8.7 11.1 7.3 6.5 1.0 3.1 2 2 2 4 4 4 0 Vps51/Vps67 RPAP1_N PF08621.5 gi|116753896|ref|YP_843014.1| - 1.8 8.2 22.3 3.2 7.4 0.4 4.2 4 0 0 4 4 4 0 RPAP1-like, N-terminal DUF1104 PF06518.6 gi|116753896|ref|YP_843014.1| - 4 7.6 13.3 13 6.0 1.8 3.0 2 2 0 2 2 2 0 Protein of unknown function (DUF1104) Peptidase_M3_N PF08439.5 gi|116753896|ref|YP_843014.1| - 5 7.2 8.7 11 6.0 0.9 2.2 2 0 0 2 2 2 0 Oligopeptidase F HABP4_PAI-RBP1 PF04774.10 gi|116753896|ref|YP_843014.1| - 5.1 7.6 13.5 27 5.3 1.9 3.5 2 2 0 2 2 2 0 Hyaluronan / mRNA binding family MarR_2 PF12802.2 gi|116753897|ref|YP_843015.1| - 5.5e-08 32.3 0.1 1.2e-07 31.2 0.1 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|116753897|ref|YP_843015.1| - 2.2e-06 27.2 0.0 3.9e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|116753897|ref|YP_843015.1| - 3.4e-06 26.5 0.1 8e-06 25.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|116753897|ref|YP_843015.1| - 0.00016 21.9 0.1 0.00032 20.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|116753897|ref|YP_843015.1| - 0.00052 19.3 0.7 0.001 18.4 0.5 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.7 gi|116753897|ref|YP_843015.1| - 0.00099 18.9 0.0 0.0064 16.3 0.0 2.2 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|116753897|ref|YP_843015.1| - 0.0017 18.0 0.1 0.015 15.0 0.1 2.4 2 0 0 2 2 2 1 MarR family HTH_19 PF12844.2 gi|116753897|ref|YP_843015.1| - 0.002 18.1 0.1 0.0033 17.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain RNA_pol_Rpc34 PF05158.7 gi|116753897|ref|YP_843015.1| - 0.0064 15.7 0.2 0.01 15.0 0.2 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit TFIIE_alpha PF02002.12 gi|116753897|ref|YP_843015.1| - 0.0065 15.9 0.1 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|116753897|ref|YP_843015.1| - 0.024 14.4 0.1 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MacB_PCD PF12704.2 gi|116753898|ref|YP_843016.1| - 2.6e-40 138.4 0.5 2.6e-40 138.4 0.4 2.7 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|116753898|ref|YP_843016.1| - 1.6e-23 82.7 17.3 1.3e-21 76.5 9.3 2.3 2 0 0 2 2 2 2 FtsX-like permease family Saccharop_dh PF03435.13 gi|116753898|ref|YP_843016.1| - 0.073 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase ABC_tran PF00005.22 gi|116753900|ref|YP_843018.1| - 7.9e-30 103.9 0.0 1.1e-29 103.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116753900|ref|YP_843018.1| - 1.7e-14 54.5 0.0 2.3e-08 34.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|116753900|ref|YP_843018.1| - 1.5e-06 27.5 0.1 0.003 16.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|116753900|ref|YP_843018.1| - 0.00013 21.4 0.1 0.00025 20.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|116753900|ref|YP_843018.1| - 0.00017 21.7 0.3 0.047 13.8 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|116753900|ref|YP_843018.1| - 0.00076 18.9 0.1 0.0012 18.3 0.1 1.6 1 1 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|116753900|ref|YP_843018.1| - 0.0023 17.1 0.0 0.0035 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NTPase_1 PF03266.10 gi|116753900|ref|YP_843018.1| - 0.0023 17.6 0.1 0.38 10.4 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_33 PF13671.1 gi|116753900|ref|YP_843018.1| - 0.0027 17.5 0.0 0.0093 15.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|116753900|ref|YP_843018.1| - 0.0039 17.2 0.1 0.0071 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|116753900|ref|YP_843018.1| - 0.0041 16.2 0.0 0.36 9.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|116753900|ref|YP_843018.1| - 0.026 14.8 0.0 0.85 9.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|116753900|ref|YP_843018.1| - 0.03 14.2 0.1 0.15 12.0 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|116753900|ref|YP_843018.1| - 0.04 13.3 0.2 0.062 12.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|116753900|ref|YP_843018.1| - 0.044 14.6 0.4 0.089 13.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|116753900|ref|YP_843018.1| - 0.1 12.3 0.0 0.35 10.6 0.0 1.9 3 0 0 3 3 2 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|116753900|ref|YP_843018.1| - 0.14 12.1 0.2 0.2 11.5 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF1341 PF07071.6 gi|116753900|ref|YP_843018.1| - 0.14 11.6 0.0 0.21 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1341) LTD PF00932.14 gi|116753901|ref|YP_843019.1| - 1e-07 31.9 0.7 1.3e-07 31.7 0.5 1.2 1 0 0 1 1 1 1 Lamin Tail Domain Tad_C PF09977.4 gi|116753901|ref|YP_843019.1| - 0.0017 19.3 1.3 0.0029 18.5 0.6 1.5 1 1 1 2 2 2 1 Putative Tad-like Flp pilus-assembly RskA PF10099.4 gi|116753901|ref|YP_843019.1| - 0.0053 16.5 0.1 0.0071 16.0 0.1 1.1 1 0 0 1 1 1 1 Anti-sigma-K factor rskA LBP_BPI_CETP PF01273.20 gi|116753901|ref|YP_843019.1| - 0.044 13.1 0.0 0.056 12.7 0.0 1.1 1 0 0 1 1 1 0 LBP / BPI / CETP family, N-terminal domain YbgS PF13985.1 gi|116753901|ref|YP_843019.1| - 0.09 12.6 0.7 0.13 12.2 0.5 1.2 1 0 0 1 1 1 0 YbgS-like protein Prenyltransf PF01255.14 gi|116753902|ref|YP_843020.1| - 5.6e-70 234.9 0.0 6.7e-70 234.6 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase NAC PF01849.13 gi|116753903|ref|YP_843021.1| - 1.3e-17 63.0 0.3 1.9e-17 62.5 0.2 1.2 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|116753903|ref|YP_843021.1| - 5.6e-05 22.8 0.0 0.00012 21.8 0.0 1.5 1 0 0 1 1 1 1 UBA/TS-N domain UBA_4 PF14555.1 gi|116753903|ref|YP_843021.1| - 0.023 14.2 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 UBA-like domain DUF387 PF04079.11 gi|116753905|ref|YP_843023.1| - 7.6e-38 129.3 0.0 1.3e-37 128.6 0.0 1.3 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_20 PF12840.2 gi|116753905|ref|YP_843023.1| - 0.0066 16.2 0.1 0.028 14.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|116753905|ref|YP_843023.1| - 0.034 13.8 0.2 0.92 9.2 0.0 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Cdc6_C PF09079.6 gi|116753905|ref|YP_843023.1| - 0.087 12.5 0.1 1 9.1 0.1 2.3 2 0 0 2 2 2 0 CDC6, C terminal Peptidase_M54 PF07998.6 gi|116753906|ref|YP_843024.1| - 4.2e-10 39.7 0.1 6.9e-10 39.0 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|116753906|ref|YP_843024.1| - 2.7e-05 23.9 0.0 3.4e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_4 PF13583.1 gi|116753906|ref|YP_843024.1| - 0.00066 19.2 0.0 0.00089 18.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|116753906|ref|YP_843024.1| - 0.0014 19.1 0.0 0.0015 19.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|116753906|ref|YP_843024.1| - 0.0015 18.6 0.0 0.0015 18.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|116753906|ref|YP_843024.1| - 0.011 15.7 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Chorion_1 PF01723.11 gi|116753906|ref|YP_843024.1| - 0.011 15.5 0.6 0.015 15.1 0.4 1.2 1 0 0 1 1 1 0 Chorion protein Metallopep PF12044.3 gi|116753906|ref|YP_843024.1| - 0.012 14.0 0.1 0.015 13.7 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family Astacin PF01400.19 gi|116753906|ref|YP_843024.1| - 0.082 12.2 0.4 0.11 11.8 0.3 1.1 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) Peptidase_M66 PF10462.4 gi|116753906|ref|YP_843024.1| - 0.11 11.3 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 DUF1025 PF06262.6 gi|116753906|ref|YP_843024.1| - 0.16 11.8 0.5 0.28 10.9 0.3 1.3 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase ParA PF10609.4 gi|116753907|ref|YP_843025.1| - 5.2e-35 119.1 0.3 9.5e-35 118.3 0.2 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|116753907|ref|YP_843025.1| - 7.4e-20 71.1 0.1 1.1e-19 70.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|116753907|ref|YP_843025.1| - 1.4e-08 34.8 0.0 2.1e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.10 gi|116753907|ref|YP_843025.1| - 5.7e-07 28.8 2.4 2.3e-06 26.9 0.3 2.2 2 1 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|116753907|ref|YP_843025.1| - 1e-06 28.0 0.0 2.3e-06 26.9 0.0 1.7 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|116753907|ref|YP_843025.1| - 2.2e-05 24.1 0.3 0.0094 15.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain SRP54 PF00448.17 gi|116753907|ref|YP_843025.1| - 0.0065 15.9 0.1 0.014 14.8 0.1 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain APS_kinase PF01583.15 gi|116753907|ref|YP_843025.1| - 0.011 15.4 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MobB PF03205.9 gi|116753907|ref|YP_843025.1| - 0.011 15.4 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|116753907|ref|YP_843025.1| - 0.02 13.7 0.5 0.035 12.8 0.0 1.6 2 0 0 2 2 2 0 ArgK protein VirC1 PF07015.6 gi|116753907|ref|YP_843025.1| - 0.028 13.5 0.0 0.045 12.8 0.0 1.2 1 0 0 1 1 1 0 VirC1 protein AAA_22 PF13401.1 gi|116753907|ref|YP_843025.1| - 0.15 12.2 0.0 0.34 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zn_Tnp_IS1595 PF12760.2 gi|116753907|ref|YP_843025.1| - 0.43 10.4 0.1 0.43 10.4 0.1 2.7 3 0 0 3 3 3 0 Transposase zinc-ribbon domain Topoisom_bac PF01131.15 gi|116753908|ref|YP_843026.1| - 1.8e-116 389.3 0.0 4.8e-116 387.9 0.0 1.6 2 0 0 2 2 2 1 DNA topoisomerase Toprim PF01751.17 gi|116753908|ref|YP_843026.1| - 4e-17 62.0 0.0 1.4e-16 60.3 0.0 2.0 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|116753908|ref|YP_843026.1| - 5.8e-15 54.5 0.7 5.8e-15 54.5 0.5 2.9 3 0 0 3 3 3 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.1 gi|116753908|ref|YP_843026.1| - 1e-08 35.1 0.0 4.3e-08 33.2 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|116753908|ref|YP_843026.1| - 0.0022 17.9 0.0 0.0056 16.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|116753908|ref|YP_843026.1| - 0.0056 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|116753908|ref|YP_843026.1| - 0.03 13.8 0.0 0.082 12.4 0.0 1.8 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda TfoX_C PF04994.8 gi|116753908|ref|YP_843026.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 TfoX C-terminal domain PmbA_TldD PF01523.11 gi|116753909|ref|YP_843027.1| - 7.3e-74 248.6 0.6 9.2e-74 248.3 0.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.8 gi|116753910|ref|YP_843028.1| - 2.9e-35 121.4 3.2 4.6e-35 120.8 2.3 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|116753910|ref|YP_843028.1| - 5.4e-29 101.2 0.0 2e-21 76.2 0.0 2.4 3 0 0 3 3 3 2 AAA domain Mg_chelatase PF01078.16 gi|116753910|ref|YP_843028.1| - 2.2e-15 56.3 0.1 6.6e-09 35.2 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|116753910|ref|YP_843028.1| - 2.2e-14 53.2 0.0 2.5e-08 33.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.1 gi|116753910|ref|YP_843028.1| - 4.7e-10 39.0 0.7 9.5e-10 38.0 0.5 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|116753910|ref|YP_843028.1| - 2.1e-09 37.2 0.0 0.0034 17.0 0.0 2.9 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|116753910|ref|YP_843028.1| - 2.3e-09 36.5 0.3 0.0077 15.0 0.0 3.3 3 0 0 3 3 3 3 MCM2/3/5 family AAA_22 PF13401.1 gi|116753910|ref|YP_843028.1| - 7.5e-06 26.1 0.0 0.014 15.5 0.0 3.1 4 0 0 4 4 2 2 AAA domain AAA PF00004.24 gi|116753910|ref|YP_843028.1| - 2.6e-05 24.4 0.0 0.17 12.0 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|116753910|ref|YP_843028.1| - 3.1e-05 24.0 0.0 0.19 11.7 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|116753910|ref|YP_843028.1| - 0.00022 20.3 0.0 0.027 13.4 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|116753910|ref|YP_843028.1| - 0.00072 18.3 0.0 1.1 7.9 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_16 PF13191.1 gi|116753910|ref|YP_843028.1| - 0.0029 17.6 0.1 0.66 9.9 0.0 3.2 3 1 1 4 4 4 1 AAA ATPase domain AAA_18 PF13238.1 gi|116753910|ref|YP_843028.1| - 0.0032 17.7 0.0 0.0069 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|116753910|ref|YP_843028.1| - 0.0033 17.1 0.0 0.012 15.3 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|116753910|ref|YP_843028.1| - 0.0038 16.7 0.2 0.17 11.3 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_3 PF07726.6 gi|116753910|ref|YP_843028.1| - 0.0052 16.3 0.1 4.4 6.9 0.0 2.9 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|116753910|ref|YP_843028.1| - 0.013 15.0 0.0 0.036 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|116753910|ref|YP_843028.1| - 0.073 11.9 0.0 0.21 10.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|116753910|ref|YP_843028.1| - 0.081 13.7 0.0 0.88 10.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|116753910|ref|YP_843028.1| - 0.091 13.0 0.0 0.26 11.5 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AsnC_trans_reg PF01037.16 gi|116753911|ref|YP_843029.1| - 6.9e-12 44.9 0.2 7.7e-12 44.7 0.2 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|116753911|ref|YP_843029.1| - 0.001 18.7 0.1 0.0011 18.6 0.1 1.1 1 0 0 1 1 1 1 GYD domain ACT_4 PF13291.1 gi|116753911|ref|YP_843029.1| - 0.0016 18.7 0.1 0.078 13.3 0.0 2.1 2 0 0 2 2 2 1 ACT domain NapD PF03927.8 gi|116753911|ref|YP_843029.1| - 0.0023 17.7 0.6 0.003 17.3 0.4 1.1 1 0 0 1 1 1 1 NapD protein Topo-VIb_trans PF09239.6 gi|116753912|ref|YP_843030.1| - 1e-65 220.1 0.0 1.6e-65 219.4 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|116753912|ref|YP_843030.1| - 3.5e-14 52.4 0.0 7.7e-14 51.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|116753912|ref|YP_843030.1| - 9.4e-10 38.2 0.0 2e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|116753912|ref|YP_843030.1| - 0.00028 19.5 0.0 0.00051 18.7 0.0 1.4 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) H2TH PF06831.9 gi|116753912|ref|YP_843030.1| - 0.005 16.5 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain MAF_flag10 PF01973.13 gi|116753912|ref|YP_843030.1| - 0.053 13.0 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF115 TP6A_N PF04406.9 gi|116753913|ref|YP_843031.1| - 1.4e-21 75.9 0.1 3.2e-21 74.7 0.0 1.6 1 0 0 1 1 1 1 Type IIB DNA topoisomerase CBS PF00571.23 gi|116753914|ref|YP_843032.1| - 4.8e-40 135.0 14.9 9.9e-16 57.2 0.8 4.1 4 0 0 4 4 4 4 CBS domain Usp PF00582.21 gi|116753915|ref|YP_843033.1| - 5.7e-35 120.5 0.8 6.4e-35 120.3 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.15 gi|116753916|ref|YP_843034.1| - 1.1e-20 74.5 0.0 4.6e-19 69.2 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|116753916|ref|YP_843034.1| - 4.3e-12 46.6 0.3 1.2e-09 38.6 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|116753916|ref|YP_843034.1| - 6.4e-10 38.8 0.0 7.7e-07 28.6 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|116753916|ref|YP_843034.1| - 2.2e-06 27.3 0.1 4.4e-06 26.4 0.1 1.5 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|116753916|ref|YP_843034.1| - 0.00065 18.7 0.0 0.0015 17.5 0.0 1.5 1 1 0 1 1 1 1 Adenosine/AMP deaminase RibD_C PF01872.12 gi|116753917|ref|YP_843035.1| - 1.8e-53 181.1 0.0 2e-53 180.9 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF169 PF02596.10 gi|116753918|ref|YP_843036.1| - 1.6e-63 214.0 0.0 1.8e-63 213.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 LTD PF00932.14 gi|116753919|ref|YP_843037.1| - 1.4e-22 79.9 1.3 1.7e-22 79.6 0.9 1.1 1 0 0 1 1 1 1 Lamin Tail Domain PUA PF01472.15 gi|116753920|ref|YP_843038.1| - 3.6e-10 39.4 0.3 4e-10 39.2 0.2 1.1 1 0 0 1 1 1 1 PUA domain DnaJ PF00226.26 gi|116753920|ref|YP_843038.1| - 0.092 12.4 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 DnaJ domain SNase PF00565.12 gi|116753921|ref|YP_843039.1| - 7.9e-09 35.7 0.0 1.2e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Ada_Zn_binding PF02805.11 gi|116753921|ref|YP_843039.1| - 0.0014 18.2 0.9 0.0025 17.3 0.6 1.4 1 0 0 1 1 1 1 Metal binding domain of Ada Methyltrn_RNA_2 PF04013.7 gi|116753922|ref|YP_843040.1| - 4.6e-63 212.3 0.0 5.1e-63 212.2 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Flavodoxin_5 PF12724.2 gi|116753923|ref|YP_843041.1| - 1.4e-15 57.5 0.0 2e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|116753923|ref|YP_843041.1| - 1.9e-08 33.9 0.0 2.7e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Pyridox_oxidase PF01243.15 gi|116753923|ref|YP_843041.1| - 5.5e-08 32.7 0.0 1e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FMN_red PF03358.10 gi|116753923|ref|YP_843041.1| - 0.0012 18.3 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Pyridox_ox_2 PF12900.2 gi|116753923|ref|YP_843041.1| - 0.0018 18.0 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Flavodoxin_1 PF00258.20 gi|116753923|ref|YP_843041.1| - 0.0092 15.9 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin DUF1743 PF08489.6 gi|116753924|ref|YP_843042.1| - 2.5e-40 136.9 0.0 4.1e-40 136.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|116753924|ref|YP_843042.1| - 0.027 14.3 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain HTH_20 PF12840.2 gi|116753925|ref|YP_843043.1| - 4.5e-17 61.5 0.3 1.2e-12 47.3 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|116753925|ref|YP_843043.1| - 1.6e-14 53.2 0.0 2.1e-08 33.6 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|116753925|ref|YP_843043.1| - 1.8e-10 40.3 0.7 0.00064 19.3 0.0 2.6 2 1 0 2 2 2 2 MarR family TrmB PF01978.14 gi|116753925|ref|YP_843043.1| - 5.1e-10 38.9 0.0 7.3e-05 22.4 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|116753925|ref|YP_843043.1| - 2.7e-07 30.4 0.0 0.00019 21.2 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|116753925|ref|YP_843043.1| - 6.9e-07 29.4 0.1 0.058 13.7 0.0 2.6 3 0 0 3 3 3 2 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|116753925|ref|YP_843043.1| - 7.4e-07 28.4 1.3 0.068 12.5 0.0 3.2 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|116753925|ref|YP_843043.1| - 1.2e-06 27.8 0.2 0.00021 20.6 0.2 2.7 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|116753925|ref|YP_843043.1| - 2.4e-06 27.5 0.0 0.018 15.1 0.0 2.6 2 0 0 2 2 2 2 Transcriptional regulator TFIIE_alpha PF02002.12 gi|116753925|ref|YP_843043.1| - 3.1e-05 23.4 0.4 0.0013 18.2 0.0 2.3 2 0 0 2 2 2 1 TFIIE alpha subunit MarR PF01047.17 gi|116753925|ref|YP_843043.1| - 4.3e-05 23.1 0.1 0.57 9.9 0.0 3.0 3 0 0 3 3 3 2 MarR family LexA_DNA_bind PF01726.11 gi|116753925|ref|YP_843043.1| - 8.1e-05 22.1 0.1 0.77 9.3 0.0 3.1 3 0 0 3 3 3 2 LexA DNA binding domain DUF4423 PF14394.1 gi|116753925|ref|YP_843043.1| - 0.00021 20.9 0.0 0.32 10.5 0.0 2.7 1 1 1 2 2 2 2 Domain of unknown function (DUF4423) DUF2250 PF10007.4 gi|116753925|ref|YP_843043.1| - 0.00058 19.7 0.0 0.92 9.4 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|116753925|ref|YP_843043.1| - 0.00075 19.1 0.0 0.12 12.0 0.0 2.7 2 0 0 2 2 2 1 HTH domain FeoC PF09012.5 gi|116753925|ref|YP_843043.1| - 0.0011 18.6 0.1 0.98 9.1 0.0 2.7 3 0 0 3 3 3 1 FeoC like transcriptional regulator EAP30 PF04157.11 gi|116753925|ref|YP_843043.1| - 0.0043 16.2 0.0 0.016 14.4 0.1 1.8 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_Crp_2 PF13545.1 gi|116753925|ref|YP_843043.1| - 0.005 16.6 0.0 0.75 9.6 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|116753925|ref|YP_843043.1| - 0.012 15.2 2.1 0.089 12.4 0.0 2.8 3 1 0 3 3 3 0 IclR helix-turn-helix domain PadR PF03551.9 gi|116753925|ref|YP_843043.1| - 0.025 14.3 0.0 0.96 9.2 0.0 2.9 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_36 PF13730.1 gi|116753925|ref|YP_843043.1| - 0.032 14.3 0.0 2 8.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF742 PF05331.6 gi|116753925|ref|YP_843043.1| - 0.076 12.6 0.2 2.7 7.6 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF742) Phage_rep_org_N PF09681.5 gi|116753925|ref|YP_843043.1| - 0.092 12.3 0.0 3.5 7.2 0.0 2.3 2 1 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) AAA PF00004.24 gi|116753926|ref|YP_843044.1| - 3.5e-97 321.6 0.0 1.2e-47 161.3 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|116753926|ref|YP_843044.1| - 2.8e-26 91.2 0.1 1.6e-25 88.8 0.1 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|116753926|ref|YP_843044.1| - 1e-15 57.4 0.1 1.4e-08 34.0 0.0 2.6 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|116753926|ref|YP_843044.1| - 1e-14 53.8 0.2 2.6e-14 52.6 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|116753926|ref|YP_843044.1| - 1.4e-13 51.2 1.7 2e-05 24.6 0.1 3.7 2 2 1 3 3 3 2 AAA ATPase domain AAA_2 PF07724.9 gi|116753926|ref|YP_843044.1| - 2.4e-13 50.3 0.0 2.2e-05 24.4 0.0 2.9 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|116753926|ref|YP_843044.1| - 1.2e-12 48.1 0.8 0.001 19.2 0.0 4.1 2 2 1 3 3 3 3 AAA domain AAA_5 PF07728.9 gi|116753926|ref|YP_843044.1| - 1.8e-12 47.1 0.4 4.7e-06 26.3 0.0 3.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|116753926|ref|YP_843044.1| - 2.2e-12 47.8 0.0 3.8e-05 24.4 0.0 2.9 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|116753926|ref|YP_843044.1| - 2.4e-12 46.2 0.0 1.8e-05 23.6 0.0 2.6 2 0 0 2 2 2 2 TIP49 C-terminus AAA_33 PF13671.1 gi|116753926|ref|YP_843044.1| - 1.5e-11 44.3 0.0 1.6e-05 24.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|116753926|ref|YP_843044.1| - 7.9e-10 38.7 0.0 0.0015 18.4 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|116753926|ref|YP_843044.1| - 3.2e-09 36.4 2.6 0.0016 18.1 0.2 3.3 3 0 0 3 3 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|116753926|ref|YP_843044.1| - 5.9e-09 35.3 0.0 0.00096 18.2 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin Sigma54_activat PF00158.21 gi|116753926|ref|YP_843044.1| - 4.9e-08 32.6 0.2 0.031 13.7 0.0 3.9 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_28 PF13521.1 gi|116753926|ref|YP_843044.1| - 1.4e-07 31.6 0.0 0.011 15.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|116753926|ref|YP_843044.1| - 1.5e-07 31.8 0.0 0.024 14.9 0.0 2.9 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.12 gi|116753926|ref|YP_843044.1| - 1.9e-07 30.7 0.2 0.014 14.8 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|116753926|ref|YP_843044.1| - 5.4e-07 28.9 1.0 0.011 14.8 0.0 2.7 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|116753926|ref|YP_843044.1| - 1.8e-06 28.0 0.0 0.047 13.7 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_25 PF13481.1 gi|116753926|ref|YP_843044.1| - 2.3e-06 27.1 6.8 0.28 10.5 0.0 4.3 2 2 1 4 4 4 2 AAA domain AAA_3 PF07726.6 gi|116753926|ref|YP_843044.1| - 2.8e-06 26.9 0.0 0.05 13.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|116753926|ref|YP_843044.1| - 7.5e-06 25.6 0.7 0.85 9.2 0.0 4.1 4 0 0 4 4 4 2 NACHT domain RNA_helicase PF00910.17 gi|116753926|ref|YP_843044.1| - 2.2e-05 24.5 0.0 0.27 11.4 0.0 2.6 2 0 0 2 2 2 2 RNA helicase KaiC PF06745.8 gi|116753926|ref|YP_843044.1| - 5e-05 22.5 0.4 0.74 8.8 0.0 3.3 2 1 1 3 3 3 2 KaiC PhoH PF02562.11 gi|116753926|ref|YP_843044.1| - 6.6e-05 22.2 0.1 0.29 10.3 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Arch_ATPase PF01637.13 gi|116753926|ref|YP_843044.1| - 0.00016 21.5 0.1 3.1 7.4 0.0 3.6 2 2 1 3 3 3 0 Archaeal ATPase Parvo_NS1 PF01057.12 gi|116753926|ref|YP_843044.1| - 0.00022 20.1 0.1 0.21 10.3 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_11 PF13086.1 gi|116753926|ref|YP_843044.1| - 0.00025 20.7 0.0 0.27 10.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|116753926|ref|YP_843044.1| - 0.00049 19.1 0.0 0.27 10.1 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|116753926|ref|YP_843044.1| - 0.00068 19.9 0.0 0.73 10.1 0.0 2.7 2 0 0 2 2 2 1 ABC transporter AAA_30 PF13604.1 gi|116753926|ref|YP_843044.1| - 0.00069 19.2 0.1 1.3 8.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|116753926|ref|YP_843044.1| - 0.00084 18.9 0.1 0.29 10.7 0.1 2.4 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|116753926|ref|YP_843044.1| - 0.001 18.6 0.1 1.7 8.3 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Cytidylate_kin2 PF13189.1 gi|116753926|ref|YP_843044.1| - 0.0011 18.9 0.0 0.11 12.4 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase-like family NB-ARC PF00931.17 gi|116753926|ref|YP_843044.1| - 0.0016 17.3 0.1 1.3 7.7 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain DUF815 PF05673.8 gi|116753926|ref|YP_843044.1| - 0.0017 17.3 0.0 0.54 9.1 0.0 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF815) CPT PF07931.7 gi|116753926|ref|YP_843044.1| - 0.0036 16.9 0.0 0.42 10.2 0.0 2.6 2 1 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein ResIII PF04851.10 gi|116753926|ref|YP_843044.1| - 0.004 17.0 0.0 2.4 7.9 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SKI PF01202.17 gi|116753926|ref|YP_843044.1| - 0.0041 16.9 0.1 1.1 9.1 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase AFG1_ATPase PF03969.11 gi|116753926|ref|YP_843044.1| - 0.024 13.4 0.0 6.6 5.4 0.0 2.7 2 0 0 2 2 2 0 AFG1-like ATPase Viral_helicase1 PF01443.13 gi|116753926|ref|YP_843044.1| - 0.025 14.0 0.0 6.3 6.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase IPT PF01745.11 gi|116753926|ref|YP_843044.1| - 0.028 13.6 0.3 1.1 8.4 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase AAA_23 PF13476.1 gi|116753926|ref|YP_843044.1| - 0.032 14.5 0.0 4.3 7.6 0.0 2.5 2 1 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|116753926|ref|YP_843044.1| - 0.042 13.3 0.6 32 3.9 0.0 3.8 3 1 0 4 4 4 0 DEAD/DEAH box helicase NTPase_1 PF03266.10 gi|116753926|ref|YP_843044.1| - 0.054 13.1 2.8 19 4.9 0.0 3.9 2 2 2 4 4 4 0 NTPase AAA_29 PF13555.1 gi|116753926|ref|YP_843044.1| - 0.11 12.1 0.0 15 5.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|116753926|ref|YP_843044.1| - 0.15 11.5 0.0 5 6.5 0.0 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Zot PF05707.7 gi|116753926|ref|YP_843044.1| - 0.16 11.4 1.3 44 3.4 0.1 3.7 2 2 0 2 2 2 0 Zonular occludens toxin (Zot) Torsin PF06309.6 gi|116753926|ref|YP_843044.1| - 0.18 11.6 0.0 6.5 6.6 0.0 2.4 2 0 0 2 2 2 0 Torsin Vac14_Fab1_bd PF12755.2 gi|116753927|ref|YP_843045.1| - 0.0078 16.5 0.4 0.0085 16.4 0.3 1.1 1 0 0 1 1 1 1 Vacuolar 14 Fab1-binding region DUF2606 PF10794.4 gi|116753927|ref|YP_843045.1| - 0.049 13.0 1.2 0.054 12.9 0.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2606) FixQ PF05545.6 gi|116753927|ref|YP_843045.1| - 0.057 13.0 0.0 0.091 12.4 0.0 1.2 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ DUF3411 PF11891.3 gi|116753927|ref|YP_843045.1| - 0.079 12.6 0.3 0.18 11.4 0.1 1.6 1 1 0 2 2 2 0 Domain of unknown function (DUF3411) Vpu PF00558.14 gi|116753927|ref|YP_843045.1| - 9 5.9 6.8 13 5.4 4.7 1.5 1 1 0 1 1 1 0 Vpu protein DeoC PF01791.4 gi|116753930|ref|YP_843048.1| - 3.1e-56 190.3 0.0 3.6e-56 190.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.9 gi|116753930|ref|YP_843048.1| - 0.00054 19.1 0.5 0.00054 19.1 0.4 1.9 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG YbjQ_1 PF01906.12 gi|116753930|ref|YP_843048.1| - 0.026 14.9 1.8 1.2 9.6 0.0 2.9 3 0 0 3 3 3 0 Putative heavy-metal-binding Dus PF01207.12 gi|116753930|ref|YP_843048.1| - 0.16 10.7 2.4 16 4.2 0.0 3.2 2 2 1 3 3 3 0 Dihydrouridine synthase (Dus) Methyltransf_21 PF05050.7 gi|116753931|ref|YP_843049.1| - 1.4e-10 41.3 0.0 2e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|116753931|ref|YP_843049.1| - 0.0018 17.8 0.0 0.0026 17.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|116753931|ref|YP_843049.1| - 0.0019 18.7 0.0 0.0028 18.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain V_cholerae_RfbT PF05575.6 gi|116753931|ref|YP_843049.1| - 0.0036 16.4 0.0 0.0081 15.2 0.0 1.5 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein PCMT PF01135.14 gi|116753931|ref|YP_843049.1| - 0.0051 16.3 0.0 0.0075 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Fibrillarin PF01269.12 gi|116753931|ref|YP_843049.1| - 0.14 11.0 0.0 0.2 10.5 0.0 1.1 1 0 0 1 1 1 0 Fibrillarin AcetylCoA_hyd_C PF13336.1 gi|116753932|ref|YP_843050.1| - 2e-63 212.6 0.0 3.3e-63 211.9 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|116753932|ref|YP_843050.1| - 3e-50 170.7 0.0 5.9e-50 169.7 0.0 1.5 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_3 PF13302.1 gi|116753932|ref|YP_843050.1| - 1.8e-11 44.3 0.0 3.3e-11 43.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|116753932|ref|YP_843050.1| - 5.3e-10 39.1 0.2 1.5e-09 37.7 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|116753932|ref|YP_843050.1| - 3.9e-08 33.3 0.1 9e-08 32.2 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|116753932|ref|YP_843050.1| - 0.0002 21.4 0.1 0.00054 20.0 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|116753932|ref|YP_843050.1| - 0.00049 20.2 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|116753932|ref|YP_843050.1| - 0.029 14.1 0.1 0.073 12.8 0.1 1.6 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.1 gi|116753932|ref|YP_843050.1| - 0.032 14.0 0.2 0.3 11.0 0.1 2.3 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase PhoU PF01895.14 gi|116753933|ref|YP_843051.1| - 2.5e-23 82.3 9.8 4.1e-16 59.2 2.2 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|116753933|ref|YP_843051.1| - 3.5e-05 23.4 0.1 8.3e-05 22.2 0.1 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU PF01895.14 gi|116753934|ref|YP_843052.1| - 9.9e-39 131.6 9.3 9.9e-20 70.7 0.8 2.1 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.22 gi|116753935|ref|YP_843053.1| - 1.6e-31 109.4 0.0 2.6e-31 108.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116753935|ref|YP_843053.1| - 6.3e-15 55.9 0.0 4.7e-08 33.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|116753935|ref|YP_843053.1| - 4.3e-07 29.3 0.0 0.0041 16.3 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|116753935|ref|YP_843053.1| - 0.00019 21.5 0.0 0.0018 18.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|116753935|ref|YP_843053.1| - 0.0002 20.5 0.0 0.00036 19.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|116753935|ref|YP_843053.1| - 0.00042 20.6 0.1 0.00077 19.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|116753935|ref|YP_843053.1| - 0.00065 19.1 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.10 gi|116753935|ref|YP_843053.1| - 0.0043 15.8 0.0 0.0064 15.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|116753935|ref|YP_843053.1| - 0.0054 16.6 0.0 0.0084 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|116753935|ref|YP_843053.1| - 0.006 15.1 0.0 0.054 11.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|116753935|ref|YP_843053.1| - 0.0065 15.9 0.0 0.022 14.2 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|116753935|ref|YP_843053.1| - 0.011 15.7 0.1 0.032 14.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|116753935|ref|YP_843053.1| - 0.033 14.3 0.0 0.56 10.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|116753935|ref|YP_843053.1| - 0.041 12.9 0.4 0.078 12.0 0.0 1.5 2 0 0 2 2 2 0 KaiC SbcCD_C PF13558.1 gi|116753935|ref|YP_843053.1| - 0.067 13.1 0.1 0.86 9.5 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|116753935|ref|YP_843053.1| - 0.072 13.9 0.3 0.13 13.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|116753935|ref|YP_843053.1| - 0.073 12.9 0.0 0.28 11.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|116753935|ref|YP_843053.1| - 0.078 11.5 0.0 2.2 6.7 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|116753935|ref|YP_843053.1| - 0.083 12.5 0.0 0.36 10.5 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase AAA_25 PF13481.1 gi|116753935|ref|YP_843053.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|116753935|ref|YP_843053.1| - 0.12 11.0 0.0 0.2 10.2 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_19 PF13245.1 gi|116753935|ref|YP_843053.1| - 0.13 12.0 0.0 0.43 10.3 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_15 PF13175.1 gi|116753935|ref|YP_843053.1| - 0.13 11.2 0.2 0.41 9.6 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|116753935|ref|YP_843053.1| - 0.14 12.1 0.1 2.5 8.0 0.0 2.2 2 1 0 2 2 2 0 AAA domain tRNA-synt_2 PF00152.15 gi|116753936|ref|YP_843054.1| - 1.1e-89 300.5 0.0 1.5e-89 300.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|116753936|ref|YP_843054.1| - 1.6e-10 40.6 0.1 2.8e-10 39.9 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|116753936|ref|YP_843054.1| - 0.021 14.0 0.3 1.4 8.0 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) DUF3194 PF11419.3 gi|116753936|ref|YP_843054.1| - 0.077 13.2 0.2 0.2 11.9 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3194) DUF3232 PF11554.3 gi|116753936|ref|YP_843054.1| - 0.083 12.8 0.1 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3232) MAF_flag10 PF01973.13 gi|116753937|ref|YP_843055.1| - 4.8e-33 114.0 0.0 6e-33 113.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|116753937|ref|YP_843055.1| - 0.092 12.3 1.2 0.25 10.9 0.3 2.0 3 1 0 3 3 3 0 Thiamin pyrophosphokinase, catalytic domain eRF1_1 PF03463.10 gi|116753939|ref|YP_843057.1| - 5.8e-33 113.2 0.1 9.2e-33 112.6 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|116753939|ref|YP_843057.1| - 1.1e-21 77.2 0.1 4e-21 75.4 0.1 2.0 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|116753939|ref|YP_843057.1| - 8.2e-19 68.2 0.0 1.3e-18 67.5 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 AA_kinase PF00696.23 gi|116753939|ref|YP_843057.1| - 0.0076 15.8 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Amino acid kinase family Rubrerythrin PF02915.12 gi|116753940|ref|YP_843058.1| - 7.4e-08 32.8 2.7 9.6e-08 32.4 1.8 1.2 1 0 0 1 1 1 1 Rubrerythrin Mn_catalase PF05067.7 gi|116753940|ref|YP_843058.1| - 0.0019 17.0 0.2 0.0022 16.8 0.1 1.0 1 0 0 1 1 1 1 Manganese containing catalase DUF2383 PF09537.5 gi|116753940|ref|YP_843058.1| - 0.0047 17.1 1.2 0.015 15.5 0.3 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF2383) Thy1 PF02511.10 gi|116753940|ref|YP_843058.1| - 0.023 14.0 0.7 0.036 13.4 0.5 1.3 1 1 0 1 1 1 0 Thymidylate synthase complementing protein Ferritin PF00210.19 gi|116753940|ref|YP_843058.1| - 0.086 12.5 2.5 0.07 12.8 0.5 1.5 1 1 1 2 2 2 0 Ferritin-like domain Staphylokinase PF02821.11 gi|116753940|ref|YP_843058.1| - 0.13 12.0 0.6 0.19 11.4 0.0 1.5 2 0 0 2 2 2 0 Staphylokinase/Streptokinase family HAD_2 PF13419.1 gi|116753941|ref|YP_843059.1| - 4e-21 76.0 0.1 4.9e-21 75.7 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|116753941|ref|YP_843059.1| - 4e-11 43.7 0.0 9.9e-10 39.1 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|116753941|ref|YP_843059.1| - 7.6e-05 22.9 0.1 0.00012 22.3 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|116753941|ref|YP_843059.1| - 0.00033 20.3 0.0 0.042 13.4 0.0 2.1 2 0 0 2 2 2 1 Acid Phosphatase Hydrolase_6 PF13344.1 gi|116753941|ref|YP_843059.1| - 0.0059 16.4 0.0 0.033 14.0 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|116753941|ref|YP_843059.1| - 0.0081 15.8 0.0 0.037 13.6 0.0 1.8 2 0 0 2 2 2 1 NLI interacting factor-like phosphatase Put_Phosphatase PF06888.7 gi|116753941|ref|YP_843059.1| - 0.0094 15.1 0.0 0.031 13.4 0.0 1.7 2 0 0 2 2 2 1 Putative Phosphatase Hydrolase_like PF13242.1 gi|116753941|ref|YP_843059.1| - 0.017 14.8 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like PNK3P PF08645.6 gi|116753941|ref|YP_843059.1| - 0.034 13.5 0.0 2.1 7.7 0.0 2.1 2 0 0 2 2 2 0 Polynucleotide kinase 3 phosphatase APG17 PF04108.7 gi|116753941|ref|YP_843059.1| - 0.07 11.9 0.0 0.097 11.4 0.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 OMPdecase PF00215.19 gi|116753942|ref|YP_843060.1| - 1.9e-38 132.1 0.0 2.4e-38 131.7 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|116753942|ref|YP_843060.1| - 0.069 12.3 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 PcrB family HATPase_c PF02518.21 gi|116753943|ref|YP_843061.1| - 7.7e-26 89.9 0.0 1.4e-25 89.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|116753943|ref|YP_843061.1| - 1.5e-09 37.6 0.1 1.5e-09 37.6 0.0 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|116753943|ref|YP_843061.1| - 1.9e-08 34.0 0.1 2.5e-07 30.4 0.0 2.9 3 1 0 3 3 3 1 PAS fold PAS_9 PF13426.1 gi|116753943|ref|YP_843061.1| - 5.4e-08 33.1 0.0 1.6e-07 31.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|116753943|ref|YP_843061.1| - 7.2e-08 32.4 0.0 1.7e-07 31.2 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|116753943|ref|YP_843061.1| - 1.2e-05 24.9 0.0 7.7e-05 22.4 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|116753943|ref|YP_843061.1| - 0.00025 20.6 0.0 0.00053 19.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|116753943|ref|YP_843061.1| - 0.00036 20.2 0.0 0.00068 19.3 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_10 PF13596.1 gi|116753943|ref|YP_843061.1| - 0.00056 20.1 0.0 0.0037 17.4 0.0 2.3 2 1 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|116753943|ref|YP_843061.1| - 0.026 14.5 0.0 1.1 9.2 0.0 2.5 2 0 0 2 2 2 0 PAS fold HATPase_c_2 PF13581.1 gi|116753943|ref|YP_843061.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Macoilin PF09726.4 gi|116753943|ref|YP_843061.1| - 6.3 4.9 5.2 1.2 7.3 0.6 1.7 2 0 0 2 2 2 0 Transmembrane protein AMP-binding_C_2 PF14535.1 gi|116753946|ref|YP_843064.1| - 1.6e-30 105.0 0.1 8.9e-30 102.5 0.2 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|116753946|ref|YP_843064.1| - 1.2e-24 86.5 0.2 2.8e-24 85.2 0.2 1.6 1 1 0 1 1 1 1 AMP-binding enzyme Gln-synt_C PF00120.19 gi|116753947|ref|YP_843065.1| - 1.8e-98 328.8 0.0 2.2e-98 328.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|116753947|ref|YP_843065.1| - 6.8e-28 96.0 0.0 1.7e-27 94.7 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain CRISPR_Cas2 PF09827.4 gi|116753948|ref|YP_843066.1| - 1.2e-22 79.8 0.3 1.4e-22 79.6 0.2 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas4 PF01930.12 gi|116753949|ref|YP_843067.1| - 5.6e-20 71.8 2.3 6.4e-20 71.6 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|116753949|ref|YP_843067.1| - 9.2e-14 51.4 6.3 1.2e-12 47.8 1.2 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Phage_NinH PF06322.6 gi|116753949|ref|YP_843067.1| - 0.07 12.7 0.2 0.17 11.5 0.1 1.7 1 0 0 1 1 1 0 Phage NinH protein DUF911 PF06023.7 gi|116753949|ref|YP_843067.1| - 0.093 11.9 1.4 0.22 10.7 0.1 1.9 2 0 0 2 2 2 0 Archaeal protein of unknown function (DUF911) Cas_TM1802 PF09484.5 gi|116753950|ref|YP_843068.1| - 5.8e-177 589.7 11.8 6.6e-177 589.6 8.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein TM1802 (cas_TM1802) NPL4 PF05021.10 gi|116753950|ref|YP_843068.1| - 0.13 11.4 0.6 0.26 10.4 0.1 1.7 2 0 0 2 2 2 0 NPL4 family K1377 PF15352.1 gi|116753950|ref|YP_843068.1| - 0.52 8.1 1.3 0.74 7.6 0.9 1.1 1 0 0 1 1 1 0 Susceptibility to monomelic amyotrophy DUF694 PF05107.7 gi|116753951|ref|YP_843069.1| - 3.9e-71 239.4 0.0 5.7e-71 238.9 0.0 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF694) Cas_Cas5d PF09704.5 gi|116753952|ref|YP_843070.1| - 2.2e-08 34.0 0.0 2.7e-08 33.6 0.0 1.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.24 gi|116753953|ref|YP_843071.1| - 5e-07 29.3 0.0 1.3e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|116753953|ref|YP_843071.1| - 9.2e-07 28.8 0.0 1.7e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|116753953|ref|YP_843071.1| - 0.0025 17.0 0.0 0.046 12.9 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein HD PF01966.17 gi|116753953|ref|YP_843071.1| - 0.0072 16.3 0.3 0.022 14.7 0.1 2.0 2 0 0 2 2 2 1 HD domain AAA_19 PF13245.1 gi|116753953|ref|YP_843071.1| - 0.077 12.7 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|116753953|ref|YP_843071.1| - 0.11 12.3 0.1 0.72 9.7 0.0 2.3 1 1 1 2 2 2 0 AAA domain SNF2_N PF00176.18 gi|116753953|ref|YP_843071.1| - 0.16 10.7 0.3 0.42 9.3 0.2 1.6 1 1 0 1 1 1 0 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|116753953|ref|YP_843071.1| - 0.57 10.0 6.0 0.068 13.0 0.4 2.3 3 0 0 3 3 3 0 Helicase conserved C-terminal domain Phage_holin_2 PF04550.7 gi|116753954|ref|YP_843072.1| - 0.12 12.4 0.6 0.21 11.7 0.1 1.5 2 0 0 2 2 2 0 Phage holin family 2 Cas_csx3 PF09620.5 gi|116753955|ref|YP_843073.1| - 8.6e-28 95.9 0.8 9.8e-28 95.7 0.5 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_csx3) DUF1887 PF09002.6 gi|116753956|ref|YP_843074.1| - 8.7e-130 432.5 0.0 1e-129 432.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) Cas_Cas02710 PF09670.5 gi|116753956|ref|YP_843074.1| - 3.3e-07 29.2 0.0 5.6e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) RAMPs PF03787.10 gi|116753957|ref|YP_843075.1| - 8.7e-13 48.5 0.4 1.7e-11 44.4 0.2 2.7 2 1 0 2 2 2 1 RAMP superfamily KaiC PF06745.8 gi|116753957|ref|YP_843075.1| - 0.028 13.5 0.0 0.046 12.8 0.0 1.3 1 0 0 1 1 1 0 KaiC Cas_Cmr5 PF09701.5 gi|116753958|ref|YP_843076.1| - 4.7e-30 104.2 0.3 5.4e-30 104.0 0.2 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.10 gi|116753959|ref|YP_843077.1| - 1e-21 77.7 0.0 1.4e-21 77.3 0.0 1.1 1 0 0 1 1 1 1 RAMP superfamily Cas_Cmr3 PF09700.5 gi|116753960|ref|YP_843078.1| - 3.8e-83 279.8 0.0 4.3e-83 279.6 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr3) DUF3692 PF12469.3 gi|116753961|ref|YP_843079.1| - 6.3e-22 78.0 0.0 2.1e-21 76.3 0.0 1.9 2 0 0 2 2 2 1 CRISPR-associated protein RAMPs PF03787.10 gi|116753962|ref|YP_843080.1| - 3e-14 53.3 0.4 2.4e-13 50.3 0.3 2.3 1 1 0 1 1 1 1 RAMP superfamily Cas_DxTHG PF09455.5 gi|116753963|ref|YP_843081.1| - 3.2e-68 230.6 0.0 3.8e-68 230.4 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family DUF1887 PF09002.6 gi|116753963|ref|YP_843081.1| - 0.0017 16.8 0.0 0.34 9.2 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1887) DDE_Tnp_1_5 PF13737.1 gi|116753964|ref|YP_843082.1| - 1.2e-28 99.4 0.0 2.9e-27 95.0 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|116753964|ref|YP_843082.1| - 1.9e-20 73.3 0.4 4.5e-20 72.1 0.2 1.6 1 1 0 1 1 1 1 Transposase DDE domain rve PF00665.21 gi|116753964|ref|YP_843082.1| - 0.12 12.4 0.1 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain Hydrolase_6 PF13344.1 gi|116753965|ref|YP_843083.1| - 9.4e-22 76.8 0.0 1.9e-21 75.8 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|116753965|ref|YP_843083.1| - 6.7e-19 67.3 0.3 3.3e-18 65.1 0.0 2.1 2 1 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|116753965|ref|YP_843083.1| - 2.5e-11 44.4 0.0 2.4e-09 37.9 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|116753965|ref|YP_843083.1| - 1.3e-08 35.2 0.0 1.1e-05 25.7 0.0 3.2 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase CGI-121 PF08617.5 gi|116753966|ref|YP_843084.1| - 5e-27 94.5 0.0 6.1e-27 94.2 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 DUF2150 PF09920.4 gi|116753967|ref|YP_843085.1| - 1e-67 227.4 1.4 1.2e-67 227.2 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) NTP_transf_4 PF13562.1 gi|116753967|ref|YP_843085.1| - 0.12 12.0 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Sugar nucleotidyl transferase Peptidase_M24 PF00557.19 gi|116753968|ref|YP_843086.1| - 5.5e-46 156.7 0.0 1.3e-45 155.5 0.0 1.5 1 1 0 1 1 1 1 Metallopeptidase family M24 tRNA-synt_2c PF01411.14 gi|116753969|ref|YP_843087.1| - 1.4e-123 413.1 0.0 1.9e-123 412.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|116753969|ref|YP_843087.1| - 1.7e-15 56.6 1.1 4.7e-15 55.2 0.8 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|116753969|ref|YP_843087.1| - 6.2e-07 29.0 8.9 1.1e-06 28.2 5.4 2.0 2 0 0 2 2 2 1 DHHA1 domain DUF3232 PF11554.3 gi|116753969|ref|YP_843087.1| - 0.1 12.4 1.6 0.31 10.9 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3232) DUF504 PF04457.7 gi|116753970|ref|YP_843088.1| - 1.8e-14 53.6 0.5 2.2e-14 53.3 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF504) DNA_pol_E_B PF04042.11 gi|116753971|ref|YP_843089.1| - 1e-12 47.7 0.0 1.5e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|116753971|ref|YP_843089.1| - 3.4e-10 39.9 0.0 6.5e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.20 gi|116753971|ref|YP_843089.1| - 3.1e-06 26.9 0.1 7.6e-06 25.6 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Metallophos PF00149.23 gi|116753971|ref|YP_843089.1| - 0.01 15.2 0.3 0.02 14.2 0.0 1.7 2 0 0 2 2 2 0 Calcineurin-like phosphoesterase Peptidase_S24 PF00717.18 gi|116753972|ref|YP_843090.1| - 0.0013 18.3 0.1 0.0028 17.2 0.1 1.6 1 0 0 1 1 1 1 Peptidase S24-like Fibrillarin PF01269.12 gi|116753973|ref|YP_843091.1| - 3.9e-61 205.8 0.0 4.3e-61 205.7 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin NikR_C PF08753.6 gi|116753974|ref|YP_843092.1| - 4.3e-32 109.8 2.4 6.1e-32 109.3 1.7 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|116753974|ref|YP_843092.1| - 1.5e-08 34.1 0.1 4.5e-08 32.6 0.1 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF1646 PF07854.7 gi|116753977|ref|YP_843095.1| - 1.2e-125 419.2 31.4 1.8e-125 418.6 21.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) DUF2645 PF10840.3 gi|116753977|ref|YP_843095.1| - 0.095 12.8 2.1 1.6 8.8 0.1 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2645) Herpes_US9 PF06072.6 gi|116753977|ref|YP_843095.1| - 4.6 7.1 5.2 26 4.7 0.1 3.3 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 NPCBM_assoc PF10633.4 gi|116753978|ref|YP_843096.1| - 0.00041 20.3 1.2 0.002 18.1 0.8 2.1 1 1 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Polyketide_cyc2 PF10604.4 gi|116753978|ref|YP_843096.1| - 0.00053 20.1 0.1 0.0009 19.4 0.1 1.4 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF128 PF01995.11 gi|116753981|ref|YP_843099.1| - 8.3e-76 254.0 0.0 1e-75 253.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|116753981|ref|YP_843099.1| - 4.9e-24 83.8 1.0 1e-23 82.8 0.4 1.8 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_IclR PF09339.5 gi|116753981|ref|YP_843099.1| - 0.02 14.4 1.1 5.1 6.7 0.0 3.5 3 0 0 3 3 3 0 IclR helix-turn-helix domain Ribosomal_S6e PF01092.14 gi|116753982|ref|YP_843100.1| - 2.4e-36 124.1 0.4 2.8e-36 123.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e FAD_binding_3 PF01494.14 gi|116753983|ref|YP_843101.1| - 6.4e-12 45.1 7.0 0.00037 19.6 0.0 3.0 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|116753983|ref|YP_843101.1| - 1.6e-09 37.1 5.8 4.7e-05 22.4 0.3 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|116753983|ref|YP_843101.1| - 1.8e-07 30.5 3.5 3e-07 29.8 1.6 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|116753983|ref|YP_843101.1| - 5.4e-07 29.6 0.6 8.1e-07 29.1 0.1 1.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|116753983|ref|YP_843101.1| - 6.8e-07 28.2 0.1 0.022 13.4 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.17 gi|116753983|ref|YP_843101.1| - 8.5e-06 24.8 0.6 1.5e-05 24.0 0.4 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|116753983|ref|YP_843101.1| - 9.1e-06 24.3 0.6 1.2e-05 23.9 0.4 1.2 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|116753983|ref|YP_843101.1| - 2.7e-05 23.2 0.1 0.00028 19.9 0.0 2.1 2 1 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.12 gi|116753983|ref|YP_843101.1| - 3.4e-05 23.0 1.3 3.4e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|116753983|ref|YP_843101.1| - 3.8e-05 23.6 0.3 0.00012 22.0 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|116753983|ref|YP_843101.1| - 7.6e-05 21.7 1.2 7.6e-05 21.7 0.8 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|116753983|ref|YP_843101.1| - 0.00012 22.4 1.3 0.00025 21.3 0.3 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|116753983|ref|YP_843101.1| - 0.0012 18.4 0.2 0.002 17.7 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.1 gi|116753983|ref|YP_843101.1| - 0.0015 18.6 0.0 0.0027 17.7 0.0 1.6 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|116753983|ref|YP_843101.1| - 0.029 14.0 0.2 0.054 13.1 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|116753983|ref|YP_843101.1| - 0.17 11.6 0.3 9 6.0 0.2 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding SSF PF00474.12 gi|116753984|ref|YP_843102.1| - 1.1e-33 116.4 32.8 1.5e-33 116.0 22.7 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Nramp PF01566.13 gi|116753984|ref|YP_843102.1| - 0.001 17.9 26.0 0.0027 16.5 18.0 1.7 1 1 0 1 1 1 1 Natural resistance-associated macrophage protein ILVD_EDD PF00920.16 gi|116753985|ref|YP_843103.1| - 2.1e-211 702.9 0.4 2.3e-211 702.7 0.3 1.0 1 0 0 1 1 1 1 Dehydratase family LigT_PEase PF02834.11 gi|116753986|ref|YP_843104.1| - 1.1e-29 102.2 0.2 3.1e-16 59.0 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|116753986|ref|YP_843104.1| - 8.4e-14 51.5 0.0 1e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|116753986|ref|YP_843104.1| - 0.0026 17.4 0.0 0.0035 17.0 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain tRNA_NucTransf2 PF09249.6 gi|116753987|ref|YP_843105.1| - 5.4e-43 145.4 0.0 8.2e-43 144.9 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|116753987|ref|YP_843105.1| - 1.6e-12 47.5 0.2 7e-12 45.5 0.0 2.2 2 0 0 2 2 2 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.14 gi|116753988|ref|YP_843106.1| - 1.1e-95 320.5 0.0 1.3e-95 320.3 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain S-layer PF07752.6 gi|116753989|ref|YP_843107.1| - 1.3e-115 385.0 34.9 3.9e-58 196.6 9.4 2.1 2 0 0 2 2 2 2 S-layer protein PA-IIL PF07472.6 gi|116753989|ref|YP_843107.1| - 1.3e-05 25.3 1.5 0.22 11.7 0.1 2.8 2 0 0 2 2 2 2 Fucose-binding lectin II (PA-IIL) PrcB_C PF14343.1 gi|116753989|ref|YP_843107.1| - 0.004 16.8 3.8 2.7 7.7 0.2 3.6 2 2 0 2 2 2 2 PrcB C-terminal DUF3954 PF13128.1 gi|116753989|ref|YP_843107.1| - 0.065 12.6 4.5 4.3 6.8 0.3 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3954) Myco_arth_vir_N PF09610.5 gi|116753989|ref|YP_843107.1| - 0.074 13.0 3.3 0.15 12.0 2.3 1.5 1 0 0 1 1 1 0 Mycoplasma virulence signal region (Myco_arth_vir_N) C1-set PF07654.10 gi|116753989|ref|YP_843107.1| - 1.2 9.2 14.4 10 6.2 0.0 5.0 6 0 0 6 6 6 0 Immunoglobulin C1-set domain APH PF01636.18 gi|116753990|ref|YP_843108.1| - 6e-12 45.8 2.4 3.5e-06 26.9 0.2 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|116753990|ref|YP_843108.1| - 1.6e-11 43.9 0.0 3.1e-11 42.9 0.0 1.4 1 1 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|116753990|ref|YP_843108.1| - 1e-08 34.5 0.2 2.2e-07 30.1 0.1 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|116753990|ref|YP_843108.1| - 5.6e-08 32.2 0.1 1.4e-07 30.9 0.1 1.7 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|116753990|ref|YP_843108.1| - 4.2e-06 26.1 0.0 5.7e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|116753990|ref|YP_843108.1| - 0.00014 21.0 0.1 0.00086 18.4 0.0 1.9 1 1 0 1 1 1 1 Protein tyrosine kinase Choline_kinase PF01633.15 gi|116753990|ref|YP_843108.1| - 0.00032 20.3 0.1 0.058 12.9 0.1 2.1 1 1 1 2 2 2 2 Choline/ethanolamine kinase EcKinase PF02958.15 gi|116753990|ref|YP_843108.1| - 0.019 14.0 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase DUF1679 PF07914.6 gi|116753990|ref|YP_843108.1| - 0.081 11.5 0.0 0.081 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) DUF1786 PF08735.5 gi|116753991|ref|YP_843109.1| - 2.8e-101 337.9 0.0 3.4e-101 337.6 0.0 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) DDR PF08841.5 gi|116753991|ref|YP_843109.1| - 0.2 10.4 0.4 0.36 9.6 0.0 1.5 2 0 0 2 2 2 0 Diol dehydratase reactivase ATPase-like domain PALP PF00291.20 gi|116753992|ref|YP_843110.1| - 4.2e-24 85.3 0.0 5.4e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ABC_tran PF00005.22 gi|116753993|ref|YP_843111.1| - 3.3e-13 50.0 0.0 4.7e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116753993|ref|YP_843111.1| - 8.8e-08 32.4 0.0 0.018 15.0 0.0 2.5 2 1 1 3 3 3 2 AAA domain SMC_N PF02463.14 gi|116753993|ref|YP_843111.1| - 0.00017 20.9 0.1 0.12 11.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|116753993|ref|YP_843111.1| - 0.00045 20.3 0.0 0.0016 18.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|116753993|ref|YP_843111.1| - 0.004 16.6 0.1 0.008 15.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|116753993|ref|YP_843111.1| - 0.005 16.8 0.2 0.0081 16.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|116753993|ref|YP_843111.1| - 0.0062 17.3 0.2 0.01 16.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|116753993|ref|YP_843111.1| - 0.012 15.2 0.0 0.033 13.8 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|116753993|ref|YP_843111.1| - 0.019 15.3 0.0 0.027 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|116753993|ref|YP_843111.1| - 0.022 13.7 0.0 0.032 13.2 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain MMR_HSR1 PF01926.18 gi|116753993|ref|YP_843111.1| - 0.024 14.5 0.1 0.044 13.7 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|116753993|ref|YP_843111.1| - 0.025 14.9 0.0 0.15 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|116753993|ref|YP_843111.1| - 0.027 14.3 0.0 0.59 10.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|116753993|ref|YP_843111.1| - 0.034 13.3 0.0 0.055 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|116753993|ref|YP_843111.1| - 0.037 13.4 0.0 0.065 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|116753993|ref|YP_843111.1| - 0.04 13.0 0.0 0.063 12.3 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin Arch_ATPase PF01637.13 gi|116753993|ref|YP_843111.1| - 0.042 13.5 0.2 0.37 10.4 0.1 2.0 1 1 0 1 1 1 0 Archaeal ATPase ATP_bind_1 PF03029.12 gi|116753993|ref|YP_843111.1| - 0.05 13.1 0.0 0.088 12.3 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|116753993|ref|YP_843111.1| - 0.065 13.7 0.0 0.16 12.5 0.0 1.7 2 0 0 2 2 2 0 Miro-like protein AAA_2 PF07724.9 gi|116753993|ref|YP_843111.1| - 0.092 12.6 0.0 2 8.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_PrkA PF08298.6 gi|116753993|ref|YP_843111.1| - 0.14 10.7 0.0 0.24 10.0 0.0 1.4 1 0 0 1 1 1 0 PrkA AAA domain AAA PF00004.24 gi|116753993|ref|YP_843111.1| - 0.16 12.1 0.4 4.2 7.5 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|116753994|ref|YP_843112.1| - 6.8e-17 61.4 0.0 9.6e-17 60.9 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|116753994|ref|YP_843112.1| - 2.2e-06 26.6 0.1 0.0069 15.2 0.0 2.3 2 0 0 2 2 2 2 ArgK protein MobB PF03205.9 gi|116753994|ref|YP_843112.1| - 6.8e-05 22.6 0.2 0.00016 21.4 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|116753994|ref|YP_843112.1| - 0.00067 18.8 0.0 0.0013 17.9 0.0 1.5 1 1 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|116753994|ref|YP_843112.1| - 0.001 18.7 0.0 0.0025 17.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain KTI12 PF08433.5 gi|116753994|ref|YP_843112.1| - 0.0028 16.9 0.0 0.0048 16.1 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|116753994|ref|YP_843112.1| - 0.0029 17.6 0.0 0.0098 15.8 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|116753994|ref|YP_843112.1| - 0.0039 17.4 0.0 0.0062 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|116753994|ref|YP_843112.1| - 0.0057 16.5 0.1 0.016 15.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|116753994|ref|YP_843112.1| - 0.0077 15.6 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|116753994|ref|YP_843112.1| - 0.0083 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase DUF2075 PF09848.4 gi|116753994|ref|YP_843112.1| - 0.0087 15.0 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|116753994|ref|YP_843112.1| - 0.0088 16.1 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain LpxK PF02606.9 gi|116753994|ref|YP_843112.1| - 0.024 13.6 0.3 0.061 12.2 0.1 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_10 PF12846.2 gi|116753994|ref|YP_843112.1| - 0.027 13.9 0.0 0.047 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|116753994|ref|YP_843112.1| - 0.041 13.5 0.1 0.19 11.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain TK PF00265.13 gi|116753994|ref|YP_843112.1| - 0.041 13.4 0.0 0.075 12.5 0.0 1.5 1 0 0 1 1 1 0 Thymidine kinase AAA_17 PF13207.1 gi|116753994|ref|YP_843112.1| - 0.043 14.6 0.0 0.079 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|116753994|ref|YP_843112.1| - 0.049 13.1 0.0 0.12 11.8 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.13 gi|116753994|ref|YP_843112.1| - 0.065 12.7 0.2 0.096 12.1 0.1 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_28 PF13521.1 gi|116753994|ref|YP_843112.1| - 0.075 12.9 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|116753994|ref|YP_843112.1| - 0.085 12.4 0.0 0.1 12.1 0.0 1.3 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|116753994|ref|YP_843112.1| - 0.09 11.3 0.0 0.12 10.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.1 gi|116753994|ref|YP_843112.1| - 0.091 12.3 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|116753994|ref|YP_843112.1| - 0.098 12.3 0.1 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 NTPase MipZ PF09140.6 gi|116753994|ref|YP_843112.1| - 0.12 11.4 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ RNA12 PF10443.4 gi|116753994|ref|YP_843112.1| - 0.12 10.8 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein Viral_helicase1 PF01443.13 gi|116753994|ref|YP_843112.1| - 0.12 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase FeS PF04060.8 gi|116753995|ref|YP_843113.1| - 1.6e-12 46.7 0.5 3.3e-12 45.7 0.3 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster Hexapep PF00132.19 gi|116753996|ref|YP_843114.1| - 1.5e-14 52.7 10.5 8.1e-05 21.9 0.4 4.2 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|116753996|ref|YP_843114.1| - 9.2e-13 47.5 4.0 5.9e-06 25.7 0.0 4.4 3 1 2 5 5 5 4 Hexapeptide repeat of succinyl-transferase DUF3421 PF11901.3 gi|116753996|ref|YP_843114.1| - 0.11 12.2 0.3 11 5.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3421) Sod_Fe_C PF02777.13 gi|116753997|ref|YP_843115.1| - 1.2e-36 124.6 0.0 1.9e-36 124.0 0.0 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|116753997|ref|YP_843115.1| - 1.5e-28 98.8 0.5 2.6e-28 98.0 0.3 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain PfkB PF00294.19 gi|116753998|ref|YP_843116.1| - 1.5e-52 178.5 0.0 1.8e-52 178.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|116753998|ref|YP_843116.1| - 1.1e-06 28.0 0.0 1.6e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|116753998|ref|YP_843116.1| - 0.0014 17.9 0.0 0.0015 17.8 0.0 1.1 1 0 0 1 1 1 1 Carbohydrate kinase CoA_binding_2 PF13380.1 gi|116753999|ref|YP_843117.1| - 7.2e-30 103.5 0.0 8.5e-30 103.2 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|116753999|ref|YP_843117.1| - 3.9e-06 27.2 0.0 5e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain Rhodanese PF00581.15 gi|116754000|ref|YP_843118.1| - 8.9e-23 80.7 0.1 1.1e-13 51.4 0.0 2.6 2 1 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|116754000|ref|YP_843118.1| - 1.3e-10 41.2 1.5 2.9e-10 40.1 1.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|116754001|ref|YP_843119.1| - 6e-38 129.6 0.0 1.1e-20 74.0 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain DGC PF08859.6 gi|116754002|ref|YP_843120.1| - 6.7e-33 112.8 1.7 7.8e-33 112.6 1.2 1.0 1 0 0 1 1 1 1 DGC domain Thioredoxin_3 PF13192.1 gi|116754003|ref|YP_843121.1| - 3.2e-27 94.1 2.0 3.5e-27 94.0 1.4 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|116754003|ref|YP_843121.1| - 0.002 18.0 0.4 0.0037 17.2 0.3 1.6 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|116754003|ref|YP_843121.1| - 0.0034 17.3 0.0 0.071 13.1 0.0 1.9 1 1 1 2 2 2 2 Thioredoxin Thioredoxin PF00085.15 gi|116754003|ref|YP_843121.1| - 0.04 13.5 0.0 0.04 13.5 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Rhodanese PF00581.15 gi|116754004|ref|YP_843122.1| - 1.4e-17 64.0 0.0 8.1e-11 42.2 0.0 2.5 2 0 0 2 2 2 2 Rhodanese-like domain Colicin_C PF12106.3 gi|116754004|ref|YP_843122.1| - 0.033 13.7 0.1 0.12 12.0 0.1 2.0 1 0 0 1 1 1 0 Colicin C terminal ribonuclease domain FlgD_ig PF13860.1 gi|116754004|ref|YP_843122.1| - 0.059 13.1 0.2 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 FlgD Ig-like domain NAD_synthase PF02540.12 gi|116754005|ref|YP_843123.1| - 3.4e-07 29.4 0.0 6e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|116754005|ref|YP_843123.1| - 8.8e-05 22.1 0.1 0.00018 21.1 0.0 1.5 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|116754005|ref|YP_843123.1| - 0.015 14.8 0.0 0.13 11.7 0.0 2.2 1 1 0 2 2 2 0 PP-loop family EAL PF00563.15 gi|116754005|ref|YP_843123.1| - 0.016 14.6 0.0 5 6.5 0.0 2.4 2 0 0 2 2 2 0 EAL domain QueC PF06508.8 gi|116754005|ref|YP_843123.1| - 0.027 13.7 0.0 0.4 9.9 0.0 2.3 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Propep_M14 PF02244.11 gi|116754005|ref|YP_843123.1| - 0.033 13.8 0.0 0.2 11.3 0.0 2.3 2 0 0 2 2 2 0 Carboxypeptidase activation peptide tRNA_Me_trans PF03054.11 gi|116754005|ref|YP_843123.1| - 0.039 12.5 0.1 1 7.8 0.3 2.5 2 1 0 2 2 2 0 tRNA methyl transferase TGT_C2 PF14810.1 gi|116754006|ref|YP_843124.1| - 1.9e-27 94.8 0.1 4.6e-27 93.6 0.1 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|116754006|ref|YP_843124.1| - 1.2e-17 63.4 0.1 1.7e-17 62.8 0.1 1.3 1 0 0 1 1 1 1 PUA domain DDE_Tnp_IS240 PF13610.1 gi|116754007|ref|YP_843125.1| - 7.8e-05 22.6 0.0 0.00011 22.1 0.0 1.2 1 0 0 1 1 1 1 DDE domain HTH_23 PF13384.1 gi|116754007|ref|YP_843125.1| - 0.00084 18.9 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain SpoIIID PF12116.3 gi|116754007|ref|YP_843125.1| - 0.0011 18.8 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Stage III sporulation protein D HTH_30 PF13556.1 gi|116754007|ref|YP_843125.1| - 0.013 15.0 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_28 PF13518.1 gi|116754007|ref|YP_843125.1| - 0.019 14.9 0.1 0.031 14.2 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.7 gi|116754007|ref|YP_843125.1| - 0.047 13.2 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) CorA PF01544.13 gi|116754008|ref|YP_843126.1| - 2.5e-74 249.9 8.5 3.2e-74 249.5 5.9 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Cytochrom_B_N_2 PF13631.1 gi|116754008|ref|YP_843126.1| - 0.15 11.8 2.4 0.27 11.0 1.7 1.4 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB BNR PF02012.15 gi|116754009|ref|YP_843127.1| - 0.26 11.2 1.3 2.6 8.2 0.1 2.7 2 0 0 2 2 2 0 BNR/Asp-box repeat AAA PF00004.24 gi|116754010|ref|YP_843128.1| - 1.4e-36 125.6 0.0 2.1e-36 125.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|116754010|ref|YP_843128.1| - 6e-09 35.3 0.0 5.2e-08 32.2 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|116754010|ref|YP_843128.1| - 7.1e-07 29.2 0.0 1.4e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|116754010|ref|YP_843128.1| - 1.6e-05 24.9 0.1 0.00066 19.7 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain Bac_DnaA PF00308.13 gi|116754010|ref|YP_843128.1| - 0.00011 21.8 0.0 0.0002 21.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|116754010|ref|YP_843128.1| - 0.00013 22.7 0.6 0.00033 21.4 0.1 2.1 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|116754010|ref|YP_843128.1| - 0.00018 20.9 0.0 0.0003 20.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|116754010|ref|YP_843128.1| - 0.00018 20.3 0.1 0.00055 18.7 0.0 1.7 2 0 0 2 2 2 1 TIP49 C-terminus AAA_22 PF13401.1 gi|116754010|ref|YP_843128.1| - 0.00029 21.0 0.4 0.012 15.6 0.3 2.5 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|116754010|ref|YP_843128.1| - 0.00054 18.9 0.0 0.0041 16.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_5 PF07728.9 gi|116754010|ref|YP_843128.1| - 0.00055 19.6 0.0 0.0024 17.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|116754010|ref|YP_843128.1| - 0.0033 17.3 0.0 0.006 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|116754010|ref|YP_843128.1| - 0.0039 16.3 0.0 0.0089 15.2 0.0 1.6 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|116754010|ref|YP_843128.1| - 0.0067 15.9 0.0 0.031 13.7 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|116754010|ref|YP_843128.1| - 0.01 16.1 0.0 0.025 14.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|116754010|ref|YP_843128.1| - 0.026 14.4 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|116754010|ref|YP_843128.1| - 0.028 14.5 0.0 0.048 13.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.13 gi|116754010|ref|YP_843128.1| - 0.033 13.6 0.2 0.42 10.0 0.0 2.3 1 1 1 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|116754010|ref|YP_843128.1| - 0.034 13.5 0.6 0.42 9.9 0.1 2.2 1 1 1 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|116754010|ref|YP_843128.1| - 0.052 13.4 0.0 0.085 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.9 gi|116754010|ref|YP_843128.1| - 0.065 12.1 0.1 0.97 8.3 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase Sigma54_activ_2 PF14532.1 gi|116754010|ref|YP_843128.1| - 0.066 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Torsin PF06309.6 gi|116754010|ref|YP_843128.1| - 0.068 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Torsin NACHT PF05729.7 gi|116754010|ref|YP_843128.1| - 0.083 12.5 0.1 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Parvo_NS1 PF01057.12 gi|116754010|ref|YP_843128.1| - 0.089 11.6 0.1 0.13 11.0 0.1 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 CPT PF07931.7 gi|116754010|ref|YP_843128.1| - 0.13 11.9 0.1 1.2 8.7 0.0 2.1 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein tRNA_int_endo PF01974.12 gi|116754012|ref|YP_843130.1| - 3.6e-49 164.4 4.3 6.6e-25 86.7 2.1 2.2 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|116754012|ref|YP_843130.1| - 5.9e-41 137.8 1.2 1.8e-21 75.4 0.0 2.6 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|116754012|ref|YP_843130.1| - 0.00093 18.6 0.4 0.34 10.3 0.0 2.5 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term Sen15 PF09631.5 gi|116754012|ref|YP_843130.1| - 0.041 14.1 0.0 0.081 13.1 0.0 1.4 1 0 0 1 1 1 0 Sen15 protein RsmJ PF04378.8 gi|116754014|ref|YP_843132.1| - 4.1e-12 45.6 0.0 5.2e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA small subunit methyltransferase D, RsmJ FeoB_N PF02421.13 gi|116754015|ref|YP_843133.1| - 5.4e-51 171.9 0.2 7.7e-51 171.4 0.1 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|116754015|ref|YP_843133.1| - 2e-28 98.4 16.1 2.7e-14 52.9 4.3 2.6 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|116754015|ref|YP_843133.1| - 1.2e-16 60.6 0.1 1.9e-16 60.0 0.1 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|116754015|ref|YP_843133.1| - 3.3e-13 48.8 1.8 3.3e-13 48.8 1.2 2.5 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus SRPRB PF09439.5 gi|116754015|ref|YP_843133.1| - 1.3e-05 24.5 0.0 2.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.11 gi|116754015|ref|YP_843133.1| - 0.0028 16.7 0.0 0.0045 16.1 0.0 1.3 1 0 0 1 1 1 1 AIG1 family PepSY_TM_2 PF13703.1 gi|116754015|ref|YP_843133.1| - 0.022 14.9 0.1 0.12 12.6 0.0 2.3 1 0 0 1 1 1 0 PepSY-associated TM helix Miro PF08477.8 gi|116754015|ref|YP_843133.1| - 0.03 14.8 0.0 0.057 13.9 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein GTP_EFTU PF00009.22 gi|116754015|ref|YP_843133.1| - 0.052 12.9 0.0 0.4 10.0 0.0 2.1 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain BPD_transp_1 PF00528.17 gi|116754016|ref|YP_843134.1| - 1.8e-23 83.0 12.9 1.8e-23 83.0 8.9 2.5 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|116754017|ref|YP_843135.1| - 2.5e-27 95.6 11.4 2.5e-27 95.6 7.9 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ACT PF01842.20 gi|116754018|ref|YP_843136.1| - 3.2e-09 36.0 0.1 9.6e-09 34.5 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|116754018|ref|YP_843136.1| - 3.1e-05 23.5 0.0 7.1e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|116754018|ref|YP_843136.1| - 0.00015 22.0 0.0 0.00053 20.2 0.0 1.9 1 1 0 1 1 1 1 ACT domain Peripla_BP_1 PF00532.16 gi|116754018|ref|YP_843136.1| - 0.032 13.4 0.1 0.054 12.6 0.1 1.4 1 1 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Transketolase_C PF02780.15 gi|116754018|ref|YP_843136.1| - 0.061 13.2 0.6 0.18 11.7 0.4 1.8 1 1 0 1 1 1 0 Transketolase, C-terminal domain Glutaredoxin PF00462.19 gi|116754019|ref|YP_843137.1| - 3.8e-10 39.6 0.0 4.7e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.9 gi|116754019|ref|YP_843137.1| - 6e-05 23.2 0.0 6.7e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|116754019|ref|YP_843137.1| - 0.00016 21.4 0.0 0.00023 20.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain GST_N_3 PF13417.1 gi|116754019|ref|YP_843137.1| - 0.00046 20.3 0.0 0.00062 19.9 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|116754019|ref|YP_843137.1| - 0.0019 18.3 0.0 0.0022 18.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|116754019|ref|YP_843137.1| - 0.01 15.8 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 0 ArsC family SH3BGR PF04908.10 gi|116754019|ref|YP_843137.1| - 0.052 13.5 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 SH3-binding, glutamic acid-rich protein Pex14_N PF04695.8 gi|116754019|ref|YP_843137.1| - 0.096 12.7 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Hjc PF01870.13 gi|116754021|ref|YP_843139.1| - 0.095 12.3 0.0 0.21 11.2 0.0 1.5 1 1 1 2 2 2 0 Archaeal holliday junction resolvase (hjc) Thymidylat_synt PF00303.14 gi|116754022|ref|YP_843140.1| - 4.5e-36 124.2 0.0 8.1e-34 116.8 0.0 2.0 1 1 1 2 2 2 2 Thymidylate synthase DUF2476 PF10630.4 gi|116754022|ref|YP_843140.1| - 0.018 14.9 0.0 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2476) Thioredoxin PF00085.15 gi|116754023|ref|YP_843141.1| - 2.8e-25 87.9 0.0 3.9e-25 87.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|116754023|ref|YP_843141.1| - 4.7e-09 36.4 0.1 5.9e-07 29.6 0.0 2.9 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|116754023|ref|YP_843141.1| - 4.9e-07 29.7 0.0 0.00018 21.5 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|116754023|ref|YP_843141.1| - 0.00024 20.6 0.0 0.00036 20.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.6 gi|116754023|ref|YP_843141.1| - 0.0017 18.2 0.0 0.0027 17.5 0.0 1.4 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.1 gi|116754023|ref|YP_843141.1| - 0.0049 16.8 0.0 0.01 15.8 0.0 1.5 2 0 0 2 2 2 1 Thioredoxin-like Redoxin PF08534.5 gi|116754023|ref|YP_843141.1| - 0.017 14.6 0.0 0.055 13.0 0.0 1.8 1 1 1 2 2 2 0 Redoxin TrbC_Ftype PF09673.5 gi|116754023|ref|YP_843141.1| - 0.029 13.9 0.0 0.062 12.8 0.0 1.6 1 1 1 2 2 2 0 Type-F conjugative transfer system pilin assembly protein DUF953 PF06110.6 gi|116754023|ref|YP_843141.1| - 0.038 13.4 0.1 0.19 11.1 0.1 1.9 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Thioredoxin_3 PF13192.1 gi|116754023|ref|YP_843141.1| - 0.062 13.1 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin domain AhpC-TSA PF00578.16 gi|116754023|ref|YP_843141.1| - 0.086 12.5 0.1 0.29 10.8 0.0 1.8 1 1 1 2 2 2 0 AhpC/TSA family DUF1638 PF07796.6 gi|116754024|ref|YP_843142.1| - 6e-17 61.7 0.0 9.9e-17 61.0 0.0 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1638) OCD_Mu_crystall PF02423.10 gi|116754025|ref|YP_843143.1| - 5.4e-107 357.1 0.1 6e-107 357.0 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|116754025|ref|YP_843143.1| - 4.6e-05 23.5 0.0 8.6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ACR_tran PF00873.14 gi|116754025|ref|YP_843143.1| - 0.0093 13.4 0.0 0.013 12.9 0.0 1.1 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family GFO_IDH_MocA PF01408.17 gi|116754025|ref|YP_843143.1| - 0.035 14.6 0.0 0.062 13.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DAO PF01266.19 gi|116754026|ref|YP_843144.1| - 2.5e-10 39.7 3.1 8.6e-06 24.8 0.1 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|116754026|ref|YP_843144.1| - 3.4e-09 36.2 1.5 4.8e-05 22.5 0.2 3.1 3 0 0 3 3 3 3 FAD binding domain Lycopene_cycl PF05834.7 gi|116754026|ref|YP_843144.1| - 1.7e-08 33.7 0.2 1.7e-07 30.5 0.1 2.3 1 1 0 1 1 1 1 Lycopene cyclase protein HI0933_like PF03486.9 gi|116754026|ref|YP_843144.1| - 3.8e-08 32.2 2.6 1.1e-07 30.7 0.6 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|116754026|ref|YP_843144.1| - 1.8e-07 30.5 0.2 3e-07 29.8 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|116754026|ref|YP_843144.1| - 7.6e-06 25.9 0.6 7.6e-06 25.9 0.4 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|116754026|ref|YP_843144.1| - 2.2e-05 23.6 0.6 5.7e-05 22.3 0.2 1.8 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|116754026|ref|YP_843144.1| - 4.4e-05 22.5 2.4 5e-05 22.3 1.0 1.6 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|116754026|ref|YP_843144.1| - 7.3e-05 21.8 0.1 0.00011 21.2 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|116754026|ref|YP_843144.1| - 0.0014 18.7 0.3 0.018 15.1 0.2 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|116754026|ref|YP_843144.1| - 0.0053 15.4 0.2 0.98 7.9 0.2 2.5 3 0 0 3 3 3 2 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|116754026|ref|YP_843144.1| - 0.0087 16.0 0.7 0.026 14.5 0.2 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|116754026|ref|YP_843144.1| - 0.059 13.7 0.6 2.1 8.7 0.1 3.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|116754026|ref|YP_843144.1| - 0.1 11.6 0.2 0.45 9.5 0.0 2.0 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|116754026|ref|YP_843144.1| - 0.23 11.2 2.0 1.7 8.3 0.3 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding DUF835 PF05763.7 gi|116754027|ref|YP_843145.1| - 6.9e-42 142.2 0.0 1.5e-22 79.5 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF835) AAA_22 PF13401.1 gi|116754027|ref|YP_843145.1| - 0.036 14.2 0.1 0.98 9.5 0.1 2.4 2 0 0 2 2 2 0 AAA domain DUF1980 PF09323.5 gi|116754027|ref|YP_843145.1| - 0.17 11.6 1.5 0.52 10.0 1.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) KaiC PF06745.8 gi|116754028|ref|YP_843146.1| - 3.9e-35 121.0 0.0 4.4e-35 120.8 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|116754028|ref|YP_843146.1| - 0.00029 20.2 0.1 0.00073 18.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|116754028|ref|YP_843146.1| - 0.00037 20.6 0.0 0.00057 20.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|116754028|ref|YP_843146.1| - 0.0012 17.8 0.0 0.0016 17.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|116754028|ref|YP_843146.1| - 0.0031 17.0 0.1 0.006 16.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|116754028|ref|YP_843146.1| - 0.0038 16.9 0.0 0.005 16.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|116754028|ref|YP_843146.1| - 0.004 17.1 0.0 0.0058 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|116754028|ref|YP_843146.1| - 0.018 15.3 0.2 0.033 14.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|116754028|ref|YP_843146.1| - 0.023 14.1 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_17 PF13207.1 gi|116754028|ref|YP_843146.1| - 0.029 15.1 0.6 0.07 13.9 0.4 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|116754028|ref|YP_843146.1| - 0.039 13.4 0.0 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_18 PF13238.1 gi|116754028|ref|YP_843146.1| - 0.045 14.0 1.4 0.074 13.3 0.9 1.5 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|116754028|ref|YP_843146.1| - 0.06 12.8 0.0 0.099 12.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.7 gi|116754028|ref|YP_843146.1| - 0.082 12.5 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|116754028|ref|YP_843146.1| - 0.084 12.7 0.0 0.15 12.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|116754028|ref|YP_843146.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ResIII PF04851.10 gi|116754028|ref|YP_843146.1| - 0.13 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.13 gi|116754028|ref|YP_843146.1| - 0.26 10.7 1.1 0.36 10.2 0.0 1.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family DUF4346 PF14251.1 gi|116754029|ref|YP_843147.1| - 8.6e-12 44.8 0.1 1.7e-10 40.6 0.0 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.17 gi|116754029|ref|YP_843147.1| - 3.6e-11 42.8 0.1 1.1e-10 41.2 0.0 1.8 1 1 1 2 2 2 1 Pterin binding enzyme DUF473 PF04322.7 gi|116754031|ref|YP_843149.1| - 1.2e-45 154.0 0.2 1.4e-45 153.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.4 gi|116754032|ref|YP_843150.1| - 2.4e-51 174.6 0.0 2.9e-51 174.4 0.0 1.0 1 0 0 1 1 1 1 PAC2 family GHMP_kinases_N PF00288.21 gi|116754032|ref|YP_843150.1| - 0.026 14.5 0.5 0.11 12.6 0.1 2.1 2 1 1 3 3 3 0 GHMP kinases N terminal domain AAA PF00004.24 gi|116754033|ref|YP_843151.1| - 4.1e-94 311.7 0.0 3.7e-47 159.8 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|116754033|ref|YP_843151.1| - 9.4e-30 102.4 0.2 6.6e-29 99.6 0.3 2.3 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|116754033|ref|YP_843151.1| - 9.1e-17 60.4 0.0 2.5e-16 59.0 0.0 1.8 1 1 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|116754033|ref|YP_843151.1| - 7e-15 55.3 0.1 4.7e-05 23.5 0.0 4.3 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|116754033|ref|YP_843151.1| - 5.4e-14 52.6 0.0 1.5e-06 28.3 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.9 gi|116754033|ref|YP_843151.1| - 6.6e-14 52.1 0.0 3.2e-07 30.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|116754033|ref|YP_843151.1| - 1.2e-13 50.7 0.0 1.2e-05 24.5 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|116754033|ref|YP_843151.1| - 2.7e-12 47.5 0.1 2.8e-05 24.9 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|116754033|ref|YP_843151.1| - 1.8e-11 44.0 0.0 4.8e-06 26.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|116754033|ref|YP_843151.1| - 2.9e-10 40.1 0.0 0.00025 20.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|116754033|ref|YP_843151.1| - 5.8e-10 38.4 0.0 0.00088 18.0 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus AAA_5 PF07728.9 gi|116754033|ref|YP_843151.1| - 8.6e-10 38.4 1.2 0.0022 17.6 0.0 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|116754033|ref|YP_843151.1| - 1.3e-09 37.4 0.1 0.00045 19.3 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|116754033|ref|YP_843151.1| - 3.3e-09 36.4 0.1 0.0038 16.6 0.0 3.1 3 0 0 3 3 3 2 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|116754033|ref|YP_843151.1| - 2.1e-08 33.6 1.0 0.0053 15.9 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|116754033|ref|YP_843151.1| - 2.3e-08 33.8 0.1 0.14 11.7 0.0 4.2 3 1 1 4 4 4 2 NACHT domain Arch_ATPase PF01637.13 gi|116754033|ref|YP_843151.1| - 3.1e-08 33.5 0.0 0.0064 16.2 0.0 3.7 2 2 2 4 4 4 2 Archaeal ATPase AAA_25 PF13481.1 gi|116754033|ref|YP_843151.1| - 3.6e-08 33.0 6.2 0.02 14.3 0.4 4.2 2 2 1 3 3 3 2 AAA domain AAA_28 PF13521.1 gi|116754033|ref|YP_843151.1| - 6.1e-08 32.7 0.0 0.004 17.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|116754033|ref|YP_843151.1| - 9.1e-08 31.7 1.8 0.018 14.7 0.1 3.2 3 0 0 3 3 3 2 Part of AAA domain AAA_24 PF13479.1 gi|116754033|ref|YP_843151.1| - 1.2e-07 31.5 0.1 0.017 14.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|116754033|ref|YP_843151.1| - 1.7e-07 31.6 0.0 0.023 14.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|116754033|ref|YP_843151.1| - 2.2e-07 30.9 0.0 0.012 15.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.21 gi|116754033|ref|YP_843151.1| - 5.2e-07 29.2 0.0 0.026 14.0 0.0 3.0 3 1 0 3 3 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|116754033|ref|YP_843151.1| - 4e-06 25.8 0.0 0.047 12.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF815 PF05673.8 gi|116754033|ref|YP_843151.1| - 4.6e-06 25.7 0.0 0.064 12.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|116754033|ref|YP_843151.1| - 8.2e-06 26.1 0.0 0.1 12.8 0.0 2.4 2 0 0 2 2 2 2 ABC transporter Sigma54_activ_2 PF14532.1 gi|116754033|ref|YP_843151.1| - 1.3e-05 25.2 0.0 0.19 11.7 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|116754033|ref|YP_843151.1| - 3.3e-05 22.9 0.0 0.22 10.3 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain SKI PF01202.17 gi|116754033|ref|YP_843151.1| - 5.6e-05 23.0 0.1 1.1 9.0 0.0 3.6 4 0 0 4 4 3 1 Shikimate kinase KaiC PF06745.8 gi|116754033|ref|YP_843151.1| - 7.4e-05 21.9 0.1 0.54 9.3 0.0 2.9 2 1 1 3 3 3 2 KaiC DUF2075 PF09848.4 gi|116754033|ref|YP_843151.1| - 0.00015 20.9 0.0 0.14 11.1 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_3 PF07726.6 gi|116754033|ref|YP_843151.1| - 0.00019 21.0 0.0 0.7 9.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|116754033|ref|YP_843151.1| - 0.0002 20.6 0.1 0.58 9.3 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein ResIII PF04851.10 gi|116754033|ref|YP_843151.1| - 0.00021 21.1 0.0 0.47 10.2 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Bac_DnaA PF00308.13 gi|116754033|ref|YP_843151.1| - 0.00037 20.1 0.0 0.98 9.0 0.0 2.8 2 1 0 2 2 2 2 Bacterial dnaA protein KAP_NTPase PF07693.9 gi|116754033|ref|YP_843151.1| - 0.00064 18.8 0.2 0.93 8.4 0.0 3.4 2 2 2 4 4 4 1 KAP family P-loop domain T2SE PF00437.15 gi|116754033|ref|YP_843151.1| - 0.00079 18.4 0.0 0.71 8.7 0.0 2.8 3 0 0 3 3 2 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|116754033|ref|YP_843151.1| - 0.00083 19.1 0.0 3.4 7.3 0.0 3.6 3 1 0 3 3 3 0 NTPase UPF0079 PF02367.12 gi|116754033|ref|YP_843151.1| - 0.00098 18.7 0.1 1.7 8.2 0.0 2.6 2 1 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Guanylate_kin PF00625.16 gi|116754033|ref|YP_843151.1| - 0.0012 18.3 0.1 9.3 5.6 0.0 4.1 2 2 2 4 4 4 0 Guanylate kinase ATP-synt_ab PF00006.20 gi|116754033|ref|YP_843151.1| - 0.0014 18.2 0.0 1.7 8.1 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AFG1_ATPase PF03969.11 gi|116754033|ref|YP_843151.1| - 0.002 16.9 0.0 1.6 7.4 0.0 2.6 3 0 0 3 3 3 1 AFG1-like ATPase AAA_11 PF13086.1 gi|116754033|ref|YP_843151.1| - 0.0022 17.6 0.0 1.9 7.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|116754033|ref|YP_843151.1| - 0.003 17.1 0.1 2.8 7.4 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|116754033|ref|YP_843151.1| - 0.0054 17.0 0.1 4.7 7.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain MCM PF00493.18 gi|116754033|ref|YP_843151.1| - 0.013 14.2 0.0 2 7.1 0.0 2.9 3 0 0 3 3 3 0 MCM2/3/5 family AAA_10 PF12846.2 gi|116754033|ref|YP_843151.1| - 0.022 14.2 0.3 8.4 5.7 0.0 2.8 3 0 0 3 3 2 0 AAA-like domain PduV-EutP PF10662.4 gi|116754033|ref|YP_843151.1| - 0.025 14.0 0.0 7.1 6.1 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation IPT PF01745.11 gi|116754033|ref|YP_843151.1| - 0.034 13.3 0.2 10 5.2 0.0 2.6 3 0 0 3 3 2 0 Isopentenyl transferase cobW PF02492.14 gi|116754033|ref|YP_843151.1| - 0.05 13.0 0.1 12 5.3 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CPT PF07931.7 gi|116754033|ref|YP_843151.1| - 0.051 13.1 0.0 14 5.2 0.0 2.7 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein PPV_E1_C PF00519.12 gi|116754033|ref|YP_843151.1| - 0.075 11.6 0.0 4.7 5.7 0.0 2.1 2 0 0 2 2 2 0 Papillomavirus helicase KTI12 PF08433.5 gi|116754033|ref|YP_843151.1| - 0.12 11.5 0.0 11 5.1 0.0 2.2 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|116754033|ref|YP_843151.1| - 0.13 11.7 0.0 9.3 5.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DAP3 PF10236.4 gi|116754033|ref|YP_843151.1| - 0.22 10.4 0.0 17 4.2 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 PIF1 PF05970.9 gi|116754033|ref|YP_843151.1| - 0.24 10.3 0.0 16 4.3 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase Toprim_4 PF13662.1 gi|116754034|ref|YP_843152.1| - 4.6e-09 36.1 0.3 1.3e-08 34.6 0.1 2.0 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|116754034|ref|YP_843152.1| - 0.00086 19.2 1.2 0.0077 16.1 0.1 3.1 2 2 1 3 3 3 1 Toprim domain DUF2004 PF09406.5 gi|116754034|ref|YP_843152.1| - 0.035 14.1 0.0 0.11 12.6 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2004) NMD3 PF04981.8 gi|116754035|ref|YP_843153.1| - 9.3e-59 198.3 0.1 1.3e-58 197.9 0.1 1.2 1 0 0 1 1 1 1 NMD3 family HflK_N PF12221.3 gi|116754035|ref|YP_843153.1| - 0.12 12.0 0.2 0.54 10.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial membrane protein N terminal DZR PF12773.2 gi|116754035|ref|YP_843153.1| - 1.3 8.8 7.5 4 7.3 1.8 2.7 2 1 0 2 2 2 0 Double zinc ribbon DUF424 PF04242.8 gi|116754036|ref|YP_843154.1| - 2.4e-29 101.1 0.0 2.8e-29 101.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) AdoMet_Synthase PF01941.14 gi|116754038|ref|YP_843156.1| - 1.5e-180 599.9 2.9 1.7e-180 599.7 2.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) NAD_synthase PF02540.12 gi|116754039|ref|YP_843157.1| - 1.5e-80 269.5 0.0 2.1e-80 269.1 0.0 1.1 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.17 gi|116754039|ref|YP_843157.1| - 8.6e-06 25.2 0.0 1.6e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Asn_synthase PF00733.16 gi|116754039|ref|YP_843157.1| - 0.0016 17.9 0.0 0.0028 17.2 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|116754039|ref|YP_843157.1| - 0.0021 16.7 0.0 0.003 16.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase QueC PF06508.8 gi|116754039|ref|YP_843157.1| - 0.14 11.4 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Cas_Cas4 PF01930.12 gi|116754040|ref|YP_843158.1| - 3.1e-14 53.2 0.0 3.6e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|116754040|ref|YP_843158.1| - 2.3e-09 36.9 0.0 2.6e-09 36.8 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|116754040|ref|YP_843158.1| - 0.0066 15.6 0.0 0.0087 15.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) DUF3249 PF11615.3 gi|116754040|ref|YP_843158.1| - 0.024 14.3 0.2 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3249) Prolactin_RP PF15172.1 gi|116754041|ref|YP_843159.1| - 0.042 13.0 0.2 0.065 12.4 0.2 1.3 1 0 0 1 1 1 0 Prolactin-releasing peptide CTDII PF01556.13 gi|116754042|ref|YP_843160.1| - 7.9e-33 112.2 0.0 7.5e-24 83.4 0.0 3.3 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|116754042|ref|YP_843160.1| - 2.6e-29 100.7 3.1 4.1e-29 100.1 2.1 1.3 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|116754042|ref|YP_843160.1| - 3.3e-15 55.8 17.0 5.5e-15 55.1 11.8 1.4 1 0 0 1 1 1 1 DnaJ central domain zf-ZPR1 PF03367.8 gi|116754042|ref|YP_843160.1| - 0.19 10.8 1.2 0.52 9.4 0.8 1.8 1 0 0 1 1 1 0 ZPR1 zinc-finger domain Cytochrom_c3_2 PF14537.1 gi|116754042|ref|YP_843160.1| - 0.21 11.9 3.1 0.43 10.9 2.2 1.5 1 0 0 1 1 1 0 Cytochrome c3 Cytochrome_C7 PF14522.1 gi|116754042|ref|YP_843160.1| - 4.3 7.0 7.4 13 5.4 5.1 1.9 1 1 0 1 1 1 0 Cytochrome c7 HypA PF01155.14 gi|116754042|ref|YP_843160.1| - 9.3 5.9 9.2 5 6.8 1.0 2.2 1 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family HSP70 PF00012.15 gi|116754043|ref|YP_843161.1| - 2.2e-232 772.2 13.6 1.7e-212 706.6 6.8 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|116754043|ref|YP_843161.1| - 5.5e-21 74.5 6.0 4.3e-20 71.5 4.1 2.4 1 1 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.11 gi|116754043|ref|YP_843161.1| - 4.5e-06 26.4 0.1 9.1e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Serglycin PF04360.7 gi|116754043|ref|YP_843161.1| - 0.028 14.1 0.2 0.046 13.4 0.1 1.3 1 0 0 1 1 1 0 Serglycin FliD_N PF02465.13 gi|116754043|ref|YP_843161.1| - 0.035 14.4 2.7 0.15 12.4 1.9 2.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus Hydantoinase_A PF01968.13 gi|116754043|ref|YP_843161.1| - 0.04 13.0 0.3 0.04 13.0 0.2 2.6 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase StbA PF06406.6 gi|116754043|ref|YP_843161.1| - 0.041 12.8 2.6 0.23 10.3 0.1 2.6 2 1 1 3 3 3 0 StbA protein MtrB PF05440.7 gi|116754043|ref|YP_843161.1| - 0.057 13.4 0.2 7.8 6.6 0.0 2.9 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B FtsA PF14450.1 gi|116754043|ref|YP_843161.1| - 0.22 11.3 11.9 7.2 6.4 0.4 5.2 4 1 0 4 4 4 0 Cell division protein FtsA DUF45 PF01863.12 gi|116754043|ref|YP_843161.1| - 0.33 10.6 4.9 0.46 10.2 2.6 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF45 Vfa1 PF08432.5 gi|116754043|ref|YP_843161.1| - 1.8 8.5 10.5 3.1 7.7 7.3 1.3 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 MRP-L28 PF09812.4 gi|116754043|ref|YP_843161.1| - 5.1 6.9 10.7 11 5.8 7.4 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L28 GrpE PF01025.14 gi|116754044|ref|YP_843162.1| - 4.1e-41 140.2 3.5 5.5e-41 139.8 2.4 1.2 1 0 0 1 1 1 1 GrpE Ada3 PF10198.4 gi|116754044|ref|YP_843162.1| - 0.037 13.7 3.7 0.041 13.6 1.5 1.8 2 0 0 2 2 2 0 Histone acetyltransferases subunit 3 Prp19_bind PF06991.6 gi|116754044|ref|YP_843162.1| - 0.19 10.9 2.4 0.29 10.3 1.6 1.2 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain DUF4404 PF14357.1 gi|116754044|ref|YP_843162.1| - 0.21 12.0 4.6 0.46 10.9 2.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) Cpn60_TCP1 PF00118.19 gi|116754045|ref|YP_843163.1| - 5.7e-167 556.1 8.8 6.5e-167 556.0 6.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family EIF_2_alpha PF07541.7 gi|116754045|ref|YP_843163.1| - 0.014 15.0 2.0 0.34 10.6 0.6 2.7 2 0 0 2 2 2 0 Eukaryotic translation initiation factor 2 alpha subunit DUF1341 PF07071.6 gi|116754045|ref|YP_843163.1| - 0.025 14.1 1.3 0.047 13.2 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1341) tRNA-synt_1b PF00579.20 gi|116754045|ref|YP_843163.1| - 0.067 12.3 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) zinc_ribbon_6 PF14599.1 gi|116754046|ref|YP_843164.1| - 0.00022 20.9 1.4 0.00055 19.6 1.0 1.5 1 1 0 1 1 1 1 Zinc-ribbon DZR PF12773.2 gi|116754046|ref|YP_843164.1| - 0.012 15.3 0.8 0.015 15.0 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon LIM PF00412.17 gi|116754046|ref|YP_843164.1| - 0.016 15.2 1.6 0.021 14.8 1.1 1.2 1 0 0 1 1 1 0 LIM domain Zn-ribbon_8 PF09723.5 gi|116754046|ref|YP_843164.1| - 0.034 14.0 1.6 0.044 13.7 1.1 1.2 1 0 0 1 1 1 0 Zinc ribbon domain zf-CHY PF05495.7 gi|116754046|ref|YP_843164.1| - 0.058 13.5 0.4 0.074 13.2 0.3 1.2 1 0 0 1 1 1 0 CHY zinc finger DNA_RNApol_7kD PF03604.8 gi|116754046|ref|YP_843164.1| - 0.12 11.8 3.4 0.44 10.0 2.4 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-C3HC4_2 PF13923.1 gi|116754046|ref|YP_843164.1| - 0.19 11.7 2.8 1.2 9.2 1.5 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF4428 PF14471.1 gi|116754046|ref|YP_843164.1| - 0.22 11.2 1.2 9.4 6.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-ribbon_3 PF13248.1 gi|116754046|ref|YP_843164.1| - 0.23 10.6 1.8 2.1 7.6 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-dskA_traR PF01258.12 gi|116754046|ref|YP_843164.1| - 0.27 11.0 3.1 7.8 6.3 0.3 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Ribosomal_S27e PF01667.12 gi|116754046|ref|YP_843164.1| - 0.37 10.3 2.5 0.67 9.5 1.7 1.4 1 1 0 1 1 1 0 Ribosomal protein S27 Zn_Tnp_IS1595 PF12760.2 gi|116754046|ref|YP_843164.1| - 1 9.2 4.2 1.3 8.8 2.9 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-trcl PF13451.1 gi|116754046|ref|YP_843164.1| - 2.1 8.0 7.0 6.8 6.4 0.5 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain Met_10 PF02475.11 gi|116754048|ref|YP_843166.1| - 1.8e-60 203.9 0.0 2.5e-60 203.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|116754048|ref|YP_843166.1| - 3.6e-05 23.7 0.0 0.00012 22.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116754048|ref|YP_843166.1| - 7.5e-05 23.2 0.0 0.00018 22.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|116754048|ref|YP_843166.1| - 8.1e-05 22.0 0.0 0.00013 21.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|116754048|ref|YP_843166.1| - 0.0041 16.6 0.0 0.0062 16.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cas_Cas4 PF01930.12 gi|116754049|ref|YP_843167.1| - 4.8e-09 36.3 0.0 8.1e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|116754049|ref|YP_843167.1| - 7.7e-08 32.0 0.1 2.2e-07 30.5 0.1 1.9 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|116754049|ref|YP_843167.1| - 0.0014 17.8 0.1 0.003 16.8 0.0 1.5 2 0 0 2 2 2 1 Archaeal protein of unknown function (DUF911) NifU_N PF01592.11 gi|116754053|ref|YP_843171.1| - 2.4e-49 166.4 0.1 2.7e-49 166.3 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain MC1 PF05854.6 gi|116754054|ref|YP_843172.1| - 3e-45 152.1 0.6 3.4e-45 151.9 0.4 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Rubrerythrin PF02915.12 gi|116754055|ref|YP_843173.1| - 1.9e-24 86.5 13.6 1.2e-23 83.9 9.4 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|116754055|ref|YP_843173.1| - 0.00089 19.0 6.9 0.0012 18.6 4.8 1.2 1 0 0 1 1 1 1 Ferritin-like domain Dehydratase_SU PF02287.10 gi|116754055|ref|YP_843173.1| - 0.024 14.3 2.1 0.046 13.4 0.4 1.9 1 1 1 2 2 2 0 Dehydratase small subunit Rad50_zn_hook PF04423.9 gi|116754055|ref|YP_843173.1| - 0.027 13.9 6.4 0.14 11.6 0.2 3.2 2 1 0 2 2 2 0 Rad50 zinc hook motif zf-C2H2_4 PF13894.1 gi|116754055|ref|YP_843173.1| - 0.035 14.4 0.7 7.3 7.1 0.1 2.8 2 0 0 2 2 2 0 C2H2-type zinc finger DZR PF12773.2 gi|116754055|ref|YP_843173.1| - 0.048 13.4 0.4 0.08 12.7 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|116754055|ref|YP_843173.1| - 0.05 13.4 3.0 4 7.4 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin Acetone_carb_G PF08882.6 gi|116754055|ref|YP_843173.1| - 0.057 13.4 0.6 0.1 12.6 0.4 1.6 1 1 0 1 1 1 0 Acetone carboxylase gamma subunit Cys_rich_CPCC PF14206.1 gi|116754055|ref|YP_843173.1| - 0.075 12.5 1.3 0.2 11.2 0.9 1.7 1 0 0 1 1 1 0 Cysteine-rich CPCC DNA_ligase_ZBD PF03119.11 gi|116754055|ref|YP_843173.1| - 0.11 12.2 5.7 1.5 8.5 1.1 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain RRN7 PF11781.3 gi|116754055|ref|YP_843173.1| - 0.14 11.6 4.1 0.14 11.6 0.1 2.4 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF2959 PF11172.3 gi|116754055|ref|YP_843173.1| - 0.15 11.7 2.0 0.18 11.5 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2959) TPR_18 PF13512.1 gi|116754055|ref|YP_843173.1| - 0.2 11.6 2.0 4.5 7.2 0.2 2.1 1 1 1 2 2 2 0 Tetratricopeptide repeat zf-C2H2 PF00096.21 gi|116754055|ref|YP_843173.1| - 0.26 11.7 1.5 15 6.2 0.1 2.8 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|116754055|ref|YP_843173.1| - 0.41 9.9 3.2 7.9 5.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|116754055|ref|YP_843173.1| - 0.61 9.5 2.1 18 4.8 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich KTR zf-ISL3 PF14690.1 gi|116754055|ref|YP_843173.1| - 1 9.4 3.7 7.5 6.6 0.3 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FdhE PF04216.7 gi|116754055|ref|YP_843173.1| - 5.9 6.5 9.8 0.75 9.4 1.6 2.2 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation UPF0547 PF10571.4 gi|116754055|ref|YP_843173.1| - 7.9 6.2 7.6 28 4.5 5.3 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 NIR_SIR PF01077.17 gi|116754056|ref|YP_843174.1| - 1.6e-36 125.0 0.2 6.4e-36 123.0 0.1 1.8 2 0 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|116754056|ref|YP_843174.1| - 9.8e-16 57.1 0.0 1.7e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Orn_Arg_deC_N PF02784.11 gi|116754057|ref|YP_843175.1| - 2e-60 204.1 0.0 2.8e-60 203.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|116754057|ref|YP_843175.1| - 1.5e-24 85.9 0.0 3.6e-24 84.7 0.0 1.5 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|116754057|ref|YP_843175.1| - 1.4e-12 47.6 0.0 3.2e-12 46.4 0.0 1.6 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain S6PP PF05116.8 gi|116754057|ref|YP_843175.1| - 0.028 13.7 0.0 0.051 12.8 0.0 1.3 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase Biotin_lipoyl_2 PF13533.1 gi|116754057|ref|YP_843175.1| - 0.077 12.6 0.1 0.28 10.8 0.0 2.0 2 0 0 2 2 2 0 Biotin-lipoyl like HEAT_2 PF13646.1 gi|116754058|ref|YP_843176.1| - 8.7e-76 250.2 27.0 7.8e-21 74.1 2.7 5.0 2 2 3 5 5 5 5 HEAT repeats HEAT PF02985.17 gi|116754058|ref|YP_843176.1| - 7.5e-34 112.7 13.5 1.4e-05 24.7 0.0 8.7 9 0 0 9 9 9 8 HEAT repeat HEAT_PBS PF03130.11 gi|116754058|ref|YP_843176.1| - 5.4e-30 100.7 38.9 6.9e-07 29.1 0.1 9.3 9 0 0 9 9 9 7 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|116754058|ref|YP_843176.1| - 4.1e-23 81.1 28.2 4.7e-05 23.7 0.0 8.5 6 2 3 9 9 9 7 HEAT-like repeat Arm PF00514.18 gi|116754058|ref|YP_843176.1| - 2.2e-17 62.1 6.7 0.03 14.1 0.1 7.7 6 2 3 9 9 9 5 Armadillo/beta-catenin-like repeat Cnd1 PF12717.2 gi|116754058|ref|YP_843176.1| - 7.3e-07 29.2 0.0 0.054 13.3 0.0 4.3 2 2 1 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|116754058|ref|YP_843176.1| - 8.8e-07 27.6 0.0 0.027 12.8 0.0 3.8 2 2 2 4 4 4 2 Adaptin N terminal region CLASP_N PF12348.3 gi|116754058|ref|YP_843176.1| - 0.00067 19.0 0.2 2.2 7.5 0.2 3.6 3 2 0 3 3 3 2 CLASP N terminal DUF4042 PF13251.1 gi|116754058|ref|YP_843176.1| - 0.04 13.3 2.0 39 3.6 0.2 4.4 2 2 4 6 6 6 0 Domain of unknown function (DUF4042) UTP15_C PF09384.5 gi|116754058|ref|YP_843176.1| - 0.095 12.3 0.3 6.6 6.4 0.3 2.7 2 1 1 3 3 3 0 UTP15 C terminal MscL PF01741.13 gi|116754059|ref|YP_843177.1| - 4.3e-40 136.8 0.8 5e-40 136.6 0.5 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL UPF0547 PF10571.4 gi|116754059|ref|YP_843177.1| - 2.9e-05 23.6 3.8 4.8e-05 22.9 2.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|116754059|ref|YP_843177.1| - 0.0087 15.8 0.8 0.012 15.4 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|116754059|ref|YP_843177.1| - 0.012 15.0 1.0 0.02 14.3 0.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain UPF0239 PF06783.6 gi|116754059|ref|YP_843177.1| - 0.024 14.5 0.1 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0239) zf-ribbon_3 PF13248.1 gi|116754059|ref|YP_843177.1| - 0.032 13.4 1.1 0.055 12.6 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|116754059|ref|YP_843177.1| - 0.042 13.6 1.9 2.9 7.7 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF2755 PF10954.3 gi|116754059|ref|YP_843177.1| - 0.19 11.4 1.6 0.24 11.1 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2755) P12 PF12669.2 gi|116754059|ref|YP_843177.1| - 0.2 11.8 2.5 1.8 8.7 0.0 2.3 2 0 0 2 2 2 0 Virus attachment protein p12 family zf-CHCC PF10276.4 gi|116754059|ref|YP_843177.1| - 0.38 10.6 3.3 14 5.6 0.4 2.5 2 0 0 2 2 2 0 Zinc-finger domain zf-C3HC4_3 PF13920.1 gi|116754059|ref|YP_843177.1| - 0.49 10.1 5.1 0.69 9.6 0.4 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-Di19 PF05605.7 gi|116754059|ref|YP_843177.1| - 1.2 9.2 6.3 7.2 6.8 0.4 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding PAP2 PF01569.16 gi|116754059|ref|YP_843177.1| - 4.1 7.0 5.4 8.2 6.1 0.3 2.0 1 1 0 2 2 2 0 PAP2 superfamily Phosphodiest PF01663.17 gi|116754060|ref|YP_843178.1| - 3.6e-13 49.5 0.5 7.9e-08 32.0 0.0 2.1 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|116754060|ref|YP_843178.1| - 2.4e-12 46.6 0.0 3.5e-09 36.2 0.0 3.0 2 1 0 3 3 3 2 Sulfatase Metalloenzyme PF01676.13 gi|116754060|ref|YP_843178.1| - 1e-05 25.0 0.2 0.00013 21.4 0.0 2.4 3 0 0 3 3 3 1 Metalloenzyme superfamily CxxCxxCC PF03692.10 gi|116754061|ref|YP_843179.1| - 5.6e-16 58.7 2.9 8.7e-16 58.1 2.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Pribosyltran PF00156.22 gi|116754062|ref|YP_843180.1| - 6.2e-19 67.9 0.0 8.4e-19 67.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|116754062|ref|YP_843180.1| - 0.02 14.0 0.0 0.027 13.6 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase RD3 PF14473.1 gi|116754062|ref|YP_843180.1| - 0.11 11.9 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 RD3 protein Death PF00531.17 gi|116754063|ref|YP_843181.1| - 0.041 13.6 0.4 0.11 12.2 0.1 1.8 1 1 0 2 2 2 0 Death domain DUF2088 PF09861.4 gi|116754064|ref|YP_843182.1| - 4.1e-54 182.7 0.0 6.2e-54 182.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) GRASP55_65 PF04495.9 gi|116754064|ref|YP_843182.1| - 0.011 15.7 0.0 0.026 14.5 0.0 1.7 2 0 0 2 2 2 0 GRASP55/65 PDZ-like domain DUF362 PF04015.7 gi|116754064|ref|YP_843182.1| - 0.014 14.8 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF362) HTH_24 PF13412.1 gi|116754066|ref|YP_843184.1| - 6.9e-07 28.5 0.4 3.7e-06 26.2 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|116754066|ref|YP_843184.1| - 7.5e-05 22.1 0.1 0.00074 18.9 0.0 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_38 PF13936.1 gi|116754066|ref|YP_843184.1| - 0.00089 18.7 0.0 0.0017 17.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|116754066|ref|YP_843184.1| - 0.0023 17.5 0.0 0.0057 16.2 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|116754066|ref|YP_843184.1| - 0.0053 16.3 0.0 0.019 14.5 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_DeoR PF08220.7 gi|116754066|ref|YP_843184.1| - 0.0081 15.6 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|116754066|ref|YP_843184.1| - 0.016 15.5 0.0 0.096 13.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_17 PF12728.2 gi|116754066|ref|YP_843184.1| - 0.02 15.1 0.0 0.093 13.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|116754066|ref|YP_843184.1| - 0.023 14.8 0.1 0.072 13.2 0.0 1.9 2 1 0 2 2 2 0 Winged helix-turn helix GntR PF00392.16 gi|116754066|ref|YP_843184.1| - 0.035 13.5 0.9 0.48 9.9 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family GerE PF00196.14 gi|116754066|ref|YP_843184.1| - 0.043 13.1 0.1 0.093 12.0 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|116754066|ref|YP_843184.1| - 0.075 12.5 0.1 0.22 11.0 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 FMN_red PF03358.10 gi|116754067|ref|YP_843185.1| - 2.8e-31 108.0 0.0 3.3e-31 107.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|116754067|ref|YP_843185.1| - 2e-07 30.7 0.0 2.6e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DUF1614 PF07758.6 gi|116754068|ref|YP_843186.1| - 5.7e-55 185.7 15.7 5.7e-55 185.7 10.9 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) His_Phos_1 PF00300.17 gi|116754069|ref|YP_843187.1| - 2.2e-33 115.5 0.0 3e-33 115.1 0.0 1.2 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) NADH-u_ox-rdase PF10785.4 gi|116754070|ref|YP_843188.1| - 0.0034 17.5 0.7 0.0086 16.3 0.1 1.9 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Glyco_trans_1_3 PF13528.1 gi|116754071|ref|YP_843189.1| - 2.6e-16 59.7 0.0 2.5e-09 36.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|116754071|ref|YP_843189.1| - 1.8e-05 24.4 0.0 2.8e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_4_4 PF13579.1 gi|116754071|ref|YP_843189.1| - 0.00023 21.3 0.0 0.00038 20.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|116754071|ref|YP_843189.1| - 0.0071 16.0 0.0 0.038 13.7 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.15 gi|116754071|ref|YP_843189.1| - 0.085 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain DUF3945 PF13101.1 gi|116754071|ref|YP_843189.1| - 0.13 11.5 0.0 0.26 10.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) DUF4147 PF13660.1 gi|116754073|ref|YP_843191.1| - 0.12 11.4 0.1 0.17 10.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) AIRS PF00586.19 gi|116754074|ref|YP_843192.1| - 6.5e-20 71.1 0.7 1.2e-19 70.3 0.5 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|116754074|ref|YP_843192.1| - 1.9e-16 60.4 0.0 3.2e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain PP2C PF00481.16 gi|116754074|ref|YP_843192.1| - 0.03 13.6 0.0 0.058 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein phosphatase 2C PHP_C PF13263.1 gi|116754076|ref|YP_843194.1| - 0.0046 16.4 0.0 0.015 14.7 0.0 1.9 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|116754076|ref|YP_843194.1| - 0.01 15.6 0.4 0.018 14.8 0.3 1.5 1 1 0 1 1 1 0 PHP domain DUF11 PF01345.13 gi|116754077|ref|YP_843195.1| - 6.4e-37 125.4 16.1 6.6e-11 42.1 0.8 8.3 8 0 0 8 8 8 5 Domain of unknown function DUF11 CARDB PF07705.6 gi|116754077|ref|YP_843195.1| - 3.1e-11 43.2 0.2 0.011 15.7 0.4 5.6 5 1 0 5 5 5 2 CARDB Chlam_OMP6 PF03504.8 gi|116754077|ref|YP_843195.1| - 1.5e-06 28.4 0.0 2.4 8.4 0.0 5.9 7 0 0 7 7 7 2 Chlamydia cysteine-rich outer membrane protein 6 NPCBM_assoc PF10633.4 gi|116754077|ref|YP_843195.1| - 0.00035 20.5 1.3 0.16 12.0 0.1 5.1 6 1 0 6 6 6 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|116754077|ref|YP_843195.1| - 0.0077 15.4 0.1 9.5 5.3 0.1 3.9 4 0 0 4 4 4 1 Translocon-associated protein beta (TRAPB) Integrin_alpha2 PF08441.7 gi|116754077|ref|YP_843195.1| - 0.029 13.2 0.0 0.11 11.2 0.0 2.0 2 0 0 2 2 2 0 Integrin alpha Alpha_adaptinC2 PF02883.15 gi|116754077|ref|YP_843195.1| - 0.3 11.4 0.0 31 4.8 0.0 3.6 4 0 0 4 4 4 0 Adaptin C-terminal domain GpcrRhopsn4 PF10192.4 gi|116754077|ref|YP_843195.1| - 1 8.5 3.0 1.5 7.9 2.1 1.2 1 0 0 1 1 1 0 Rhodopsin-like GPCR transmembrane domain CitG PF01874.11 gi|116754079|ref|YP_843197.1| - 2.6e-74 249.9 0.1 2.9e-74 249.7 0.1 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|116754080|ref|YP_843198.1| - 3.9e-51 173.1 0.1 4.4e-51 172.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Cpn60_TCP1 PF00118.19 gi|116754081|ref|YP_843199.1| - 7.3e-174 578.9 13.7 8.3e-174 578.7 9.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family BatA PF07584.6 gi|116754082|ref|YP_843200.1| - 5.1e-16 58.6 5.8 5.1e-16 58.6 4.0 1.8 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_3 PF13768.1 gi|116754082|ref|YP_843200.1| - 5.9e-05 22.7 0.1 0.0001 22.0 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|116754082|ref|YP_843200.1| - 0.021 13.9 0.2 0.036 13.1 0.1 1.3 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|116754082|ref|YP_843200.1| - 0.033 14.2 2.0 0.053 13.6 0.7 1.8 2 1 0 2 2 2 0 von Willebrand factor type A domain GAF PF01590.21 gi|116754082|ref|YP_843200.1| - 0.042 13.9 0.0 0.16 12.1 0.0 2.0 2 0 0 2 2 2 0 GAF domain VWA_2 PF13519.1 gi|116754083|ref|YP_843201.1| - 9.5e-24 84.4 0.1 8.7e-20 71.5 0.0 3.3 3 2 0 3 3 3 2 von Willebrand factor type A domain DUF1355 PF07090.6 gi|116754083|ref|YP_843201.1| - 2.5e-09 36.7 0.1 5.8e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) VWA PF00092.23 gi|116754083|ref|YP_843201.1| - 4e-07 29.9 0.0 0.0088 15.7 0.0 2.5 2 0 0 2 2 2 2 von Willebrand factor type A domain Glyco_hydro_42M PF08532.5 gi|116754083|ref|YP_843201.1| - 0.0087 15.2 0.2 2.7 7.0 0.0 2.3 2 0 0 2 2 2 2 Beta-galactosidase trimerisation domain Lact_bio_phlase PF09508.5 gi|116754083|ref|YP_843201.1| - 0.012 13.3 0.0 0.044 11.4 0.0 1.7 2 0 0 2 2 2 0 Lacto-N-biose phosphorylase ThuA PF06283.6 gi|116754083|ref|YP_843201.1| - 0.03 14.0 0.0 0.08 12.6 0.0 1.7 2 0 0 2 2 2 0 Trehalose utilisation tRNA-synt_1f PF01921.13 gi|116754085|ref|YP_843203.1| - 1.1e-129 432.1 0.0 1.5e-129 431.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|116754085|ref|YP_843203.1| - 3.6e-07 29.1 0.0 0.00099 17.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|116754085|ref|YP_843203.1| - 0.00038 19.6 0.0 0.5 9.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.20 gi|116754085|ref|YP_843203.1| - 0.18 10.9 0.0 0.27 10.3 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) FmdE PF02663.9 gi|116754086|ref|YP_843204.1| - 5.8e-21 74.7 0.0 6.6e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ABC_tran PF00005.22 gi|116754087|ref|YP_843205.1| - 5.7e-27 94.6 0.0 7.2e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116754087|ref|YP_843205.1| - 3.2e-08 33.8 0.0 0.00014 21.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|116754087|ref|YP_843205.1| - 1e-05 25.9 0.0 1.3e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|116754087|ref|YP_843205.1| - 2.1e-05 23.8 0.1 0.055 12.6 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|116754087|ref|YP_843205.1| - 0.00016 21.0 0.3 0.00048 19.5 0.1 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|116754087|ref|YP_843205.1| - 0.00024 21.1 0.1 0.00072 19.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|116754087|ref|YP_843205.1| - 0.00076 18.6 0.0 0.92 8.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|116754087|ref|YP_843205.1| - 0.0011 18.8 0.0 0.021 14.7 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|116754087|ref|YP_843205.1| - 0.0038 17.4 0.0 0.54 10.4 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|116754087|ref|YP_843205.1| - 0.0041 16.3 0.0 0.0063 15.7 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|116754087|ref|YP_843205.1| - 0.0086 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|116754087|ref|YP_843205.1| - 0.022 14.4 0.0 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain T2SE PF00437.15 gi|116754087|ref|YP_843205.1| - 0.024 13.5 0.1 0.045 12.6 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|116754087|ref|YP_843205.1| - 0.028 14.5 0.4 0.12 12.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|116754087|ref|YP_843205.1| - 0.029 13.9 0.2 0.048 13.2 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|116754087|ref|YP_843205.1| - 0.037 13.2 0.0 0.052 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|116754087|ref|YP_843205.1| - 0.043 13.2 0.7 0.064 12.6 0.1 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.1 gi|116754087|ref|YP_843205.1| - 0.048 13.2 0.1 0.072 12.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|116754087|ref|YP_843205.1| - 0.049 13.5 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.3 gi|116754087|ref|YP_843205.1| - 0.055 10.7 0.7 0.074 10.3 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Arch_ATPase PF01637.13 gi|116754087|ref|YP_843205.1| - 0.061 13.0 0.0 0.083 12.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|116754087|ref|YP_843205.1| - 0.07 12.8 0.2 0.19 11.5 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|116754087|ref|YP_843205.1| - 0.072 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ArgK PF03308.11 gi|116754087|ref|YP_843205.1| - 0.092 11.5 0.1 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_17 PF13207.1 gi|116754087|ref|YP_843205.1| - 0.096 13.5 0.3 0.22 12.3 0.2 2.0 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|116754087|ref|YP_843205.1| - 0.12 11.4 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin MobB PF03205.9 gi|116754087|ref|YP_843205.1| - 0.12 12.0 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|116754087|ref|YP_843205.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|116754087|ref|YP_843205.1| - 0.16 10.5 0.8 1.7 7.1 0.2 2.1 2 1 0 2 2 2 0 Predicted ATPase of the ABC class ATP-synt_ab PF00006.20 gi|116754087|ref|YP_843205.1| - 0.2 11.1 0.3 0.34 10.3 0.2 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC-3 PF00950.12 gi|116754088|ref|YP_843206.1| - 4.1e-49 167.2 37.9 4.9e-49 166.9 26.3 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|116754088|ref|YP_843206.1| - 5.4e-07 28.7 40.2 1.7e-06 27.0 27.8 1.6 1 1 0 1 1 1 1 FecCD transport family ADH_N PF08240.7 gi|116754090|ref|YP_843208.1| - 5.7e-34 116.1 0.0 8.6e-34 115.5 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|116754090|ref|YP_843208.1| - 0.00019 20.9 0.0 0.00042 19.8 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|116754090|ref|YP_843208.1| - 0.0009 20.1 0.0 0.0014 19.4 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase GFO_IDH_MocA PF01408.17 gi|116754090|ref|YP_843208.1| - 0.13 12.8 0.0 0.23 12.0 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DEAD_assoc PF08494.6 gi|116754091|ref|YP_843209.1| - 1.2e-39 136.0 0.0 2.3e-39 135.0 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|116754091|ref|YP_843209.1| - 1.8e-34 118.6 0.0 2e-33 115.2 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|116754091|ref|YP_843209.1| - 4.3e-17 61.7 0.0 1e-15 57.3 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|116754091|ref|YP_843209.1| - 3.3e-06 27.0 0.0 5.9e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|116754091|ref|YP_843209.1| - 0.00024 20.0 0.0 0.00071 18.4 0.0 1.7 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|116754091|ref|YP_843209.1| - 0.032 13.9 0.0 0.24 11.1 0.0 2.5 1 0 0 1 1 1 0 Part of AAA domain YdjO PF14169.1 gi|116754091|ref|YP_843209.1| - 0.036 13.5 0.7 0.098 12.1 0.5 1.7 1 0 0 1 1 1 0 Cold-inducible protein YdjO AAA_25 PF13481.1 gi|116754091|ref|YP_843209.1| - 0.058 12.7 0.0 0.15 11.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain RNase_HII PF01351.13 gi|116754092|ref|YP_843210.1| - 2.8e-43 147.8 0.1 3.2e-43 147.6 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Aminotran_5 PF00266.14 gi|116754093|ref|YP_843211.1| - 1.1e-44 152.7 0.0 1.3e-44 152.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Lipase_GDSL_2 PF13472.1 gi|116754093|ref|YP_843211.1| - 0.017 15.2 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family DegT_DnrJ_EryC1 PF01041.12 gi|116754093|ref|YP_843211.1| - 0.025 13.6 0.0 0.045 12.7 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family CMD PF02627.15 gi|116754094|ref|YP_843212.1| - 5.1e-15 55.0 3.8 6.3e-15 54.7 2.6 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Pyridox_oxidase PF01243.15 gi|116754095|ref|YP_843213.1| - 3.2e-16 59.1 0.0 6.6e-16 58.1 0.0 1.5 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|116754095|ref|YP_843213.1| - 0.0035 17.1 0.0 0.0046 16.7 0.0 1.3 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|116754095|ref|YP_843213.1| - 0.0065 16.0 0.1 0.01 15.3 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF447) RYDR_ITPR PF01365.16 gi|116754095|ref|YP_843213.1| - 0.021 14.0 0.8 0.029 13.5 0.6 1.4 1 0 0 1 1 1 0 RIH domain Ribosomal_S2 PF00318.15 gi|116754095|ref|YP_843213.1| - 0.05 12.8 0.4 0.06 12.5 0.3 1.1 1 0 0 1 1 1 0 Ribosomal protein S2 SSXT PF05030.7 gi|116754095|ref|YP_843213.1| - 0.1 12.1 0.0 4.4 6.9 0.0 2.6 2 0 0 2 2 2 0 SSXT protein (N-terminal region) DUF2240 PF09999.4 gi|116754095|ref|YP_843213.1| - 0.17 11.3 1.1 0.37 10.2 0.7 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) SBP_bac_5 PF00496.17 gi|116754096|ref|YP_843214.1| - 2.4e-82 276.7 0.8 3.3e-82 276.3 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle NosD PF05048.8 gi|116754098|ref|YP_843216.1| - 3.2e-62 209.7 98.7 6.4e-23 81.1 19.2 4.3 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|116754098|ref|YP_843216.1| - 5e-44 149.8 81.7 1.3e-13 51.0 13.4 4.5 1 1 3 4 4 4 4 Right handed beta helix region Pectinesterase PF01095.14 gi|116754098|ref|YP_843216.1| - 0.0057 15.2 0.0 0.01 14.4 0.0 1.4 1 0 0 1 1 1 1 Pectinesterase Aconitase PF00330.15 gi|116754099|ref|YP_843217.1| - 1.9e-79 267.3 0.1 7.6e-49 166.4 0.0 2.3 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) PHP PF02811.14 gi|116754100|ref|YP_843218.1| - 1.7e-16 60.4 0.0 2.9e-16 59.7 0.0 1.5 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|116754100|ref|YP_843218.1| - 8.7e-16 57.1 1.5 1.5e-15 56.3 0.0 2.1 3 0 0 3 3 3 1 PHP-associated CBS PF00571.23 gi|116754100|ref|YP_843218.1| - 0.16 11.7 1.7 3.2 7.6 0.0 3.4 4 0 0 4 4 4 0 CBS domain CTP_transf_2 PF01467.21 gi|116754101|ref|YP_843219.1| - 1.8e-16 60.5 0.1 1.7e-15 57.4 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|116754101|ref|YP_843219.1| - 3.2e-06 26.8 0.0 5.1e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 FAD synthetase PTS_IIB PF02302.12 gi|116754101|ref|YP_843219.1| - 0.0054 17.1 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit OCIA PF07051.6 gi|116754101|ref|YP_843219.1| - 0.11 11.8 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Ovarian carcinoma immunoreactive antigen (OCIA) CTP_transf_2 PF01467.21 gi|116754102|ref|YP_843220.1| - 7e-18 65.1 0.0 2.1e-17 63.6 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase Prok-JAB PF14464.1 gi|116754103|ref|YP_843221.1| - 7.7e-11 41.5 0.1 1.2e-10 40.8 0.1 1.3 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain BPL_LplA_LipB PF03099.14 gi|116754104|ref|YP_843222.1| - 7.9e-25 87.2 0.0 1.6e-24 86.2 0.0 1.5 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|116754104|ref|YP_843222.1| - 2.8e-13 49.2 0.1 6.6e-13 48.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|116754104|ref|YP_843222.1| - 2e-09 37.0 0.3 5e-09 35.7 0.2 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|116754104|ref|YP_843222.1| - 0.035 13.4 0.0 0.099 12.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CPSase_L_D2 PF02786.12 gi|116754105|ref|YP_843223.1| - 9e-77 257.1 0.0 1.3e-76 256.5 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|116754105|ref|YP_843223.1| - 9e-45 151.2 0.1 1.4e-43 147.4 0.0 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|116754105|ref|YP_843223.1| - 6e-42 141.9 0.0 1.2e-41 141.0 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|116754105|ref|YP_843223.1| - 2.6e-17 63.1 0.0 5e-17 62.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|116754105|ref|YP_843223.1| - 5.9e-15 54.8 0.0 1.5e-09 37.1 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|116754105|ref|YP_843223.1| - 1.5e-11 44.1 0.0 3.6e-11 42.8 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|116754105|ref|YP_843223.1| - 4.5e-08 32.7 0.0 1.1e-06 28.2 0.0 2.5 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|116754105|ref|YP_843223.1| - 3e-06 27.1 0.0 8.9e-06 25.6 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|116754105|ref|YP_843223.1| - 2.9e-05 23.5 0.0 7.8e-05 22.0 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain UPF0150 PF03681.10 gi|116754105|ref|YP_843223.1| - 0.05 13.2 0.0 1.1 8.9 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) DUF1611 PF07755.6 gi|116754105|ref|YP_843223.1| - 0.099 11.2 0.0 0.22 10.1 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1611) DUF1803 PF08820.5 gi|116754106|ref|YP_843224.1| - 0.3 10.8 1.8 0.3 10.7 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1803) Glyco_transf_20 PF00982.16 gi|116754107|ref|YP_843225.1| - 0.018 13.5 0.0 0.02 13.4 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase family 20 Ibs_toxin PF13956.1 gi|116754107|ref|YP_843225.1| - 1.3 8.8 3.8 2.2 8.1 2.7 1.3 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system Glycos_transf_1 PF00534.15 gi|116754108|ref|YP_843226.1| - 2.5e-22 79.1 0.0 4.5e-22 78.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|116754108|ref|YP_843226.1| - 1e-07 32.1 0.0 1.9e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|116754108|ref|YP_843226.1| - 6.6e-07 29.5 0.0 1.2e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|116754110|ref|YP_843228.1| - 9.9e-150 499.1 0.0 1.2e-149 498.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.11 gi|116754110|ref|YP_843228.1| - 3.4e-55 186.5 0.0 8.7e-55 185.1 0.0 1.7 2 0 0 2 2 2 1 Trehalose-phosphatase Glycos_transf_1 PF00534.15 gi|116754110|ref|YP_843228.1| - 2.3e-05 23.8 0.1 0.00058 19.3 0.1 2.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Hydrolase_3 PF08282.7 gi|116754110|ref|YP_843228.1| - 2.4e-05 24.0 0.0 0.0057 16.2 0.0 2.4 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|116754110|ref|YP_843228.1| - 0.00096 18.5 0.0 0.0054 16.0 0.0 2.0 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Glyco_transf_5 PF08323.6 gi|116754110|ref|YP_843228.1| - 0.14 11.6 0.2 0.26 10.7 0.2 1.4 1 0 0 1 1 1 0 Starch synthase catalytic domain DEAD PF00270.24 gi|116754111|ref|YP_843229.1| - 1.7e-30 105.7 0.0 2.3e-29 102.0 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|116754111|ref|YP_843229.1| - 4.4e-11 42.7 0.9 1.8e-10 40.8 0.4 2.4 2 0 0 2 2 1 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|116754111|ref|YP_843229.1| - 2.2e-08 33.8 0.0 5e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.4 gi|116754111|ref|YP_843229.1| - 7.8e-07 28.5 0.0 2.6e-06 26.8 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Sec63 PF02889.11 gi|116754111|ref|YP_843229.1| - 3.2e-05 23.3 0.0 6e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.10 gi|116754111|ref|YP_843229.1| - 0.00014 21.8 0.0 0.0003 20.6 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|116754111|ref|YP_843229.1| - 0.00062 19.6 0.0 0.0034 17.2 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif SecA_DEAD PF07517.9 gi|116754111|ref|YP_843229.1| - 0.0087 15.3 0.0 0.02 14.2 0.0 1.5 2 0 0 2 2 2 1 SecA DEAD-like domain KaiC PF06745.8 gi|116754111|ref|YP_843229.1| - 0.014 14.5 0.0 0.082 12.0 0.0 2.1 2 0 0 2 2 2 0 KaiC Cdd1 PF11731.3 gi|116754111|ref|YP_843229.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus HHH PF00633.18 gi|116754111|ref|YP_843229.1| - 0.13 12.0 0.7 0.82 9.4 0.0 2.8 3 0 0 3 3 3 0 Helix-hairpin-helix motif Aminotran_1_2 PF00155.16 gi|116754112|ref|YP_843230.1| - 8.4e-59 199.3 0.0 9.5e-59 199.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|116754112|ref|YP_843230.1| - 0.013 14.7 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase tRNA-synt_1 PF00133.17 gi|116754113|ref|YP_843231.1| - 1.8e-59 201.3 0.0 1.9e-43 148.4 0.0 3.0 3 0 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|116754113|ref|YP_843231.1| - 1.3e-24 86.6 0.0 6.7e-11 41.4 0.0 3.2 3 0 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|116754113|ref|YP_843231.1| - 1.6e-21 76.6 0.1 3.3e-21 75.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|116754113|ref|YP_843231.1| - 2.7e-08 33.3 0.0 5.5e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|116754113|ref|YP_843231.1| - 2e-06 27.1 0.0 8.1e-05 21.8 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|116754113|ref|YP_843231.1| - 0.0014 17.5 0.0 0.0029 16.4 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (R) CPSase_L_D3 PF02787.14 gi|116754113|ref|YP_843231.1| - 0.067 12.9 0.2 0.35 10.6 0.1 2.2 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DJ-1_PfpI PF01965.19 gi|116754114|ref|YP_843232.1| - 1.2e-33 115.6 0.2 1.4e-33 115.4 0.1 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|116754114|ref|YP_843232.1| - 4.5e-27 94.3 0.0 5.2e-27 94.1 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|116754114|ref|YP_843232.1| - 0.00012 21.6 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain HTH_20 PF12840.2 gi|116754115|ref|YP_843233.1| - 8.9e-08 31.8 0.2 1.3e-07 31.3 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.7 gi|116754115|ref|YP_843233.1| - 0.0011 19.0 0.1 0.0027 17.8 0.0 1.7 2 0 0 2 2 2 1 FaeA-like protein HTH_12 PF08461.5 gi|116754115|ref|YP_843233.1| - 0.028 14.1 0.3 0.041 13.6 0.2 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Late_protein_L1 PF00500.13 gi|116754115|ref|YP_843233.1| - 0.043 12.3 0.0 0.048 12.2 0.0 1.1 1 0 0 1 1 1 0 L1 (late) protein HTH_45 PF14947.1 gi|116754115|ref|YP_843233.1| - 0.06 13.1 0.0 0.085 12.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HSP20 PF00011.16 gi|116754116|ref|YP_843234.1| - 1.6e-11 43.9 2.4 4.7e-10 39.2 1.6 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|116754116|ref|YP_843234.1| - 0.00057 19.4 0.1 0.00081 18.9 0.0 1.1 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 CS PF04969.11 gi|116754116|ref|YP_843234.1| - 0.0018 18.7 0.3 0.0028 18.1 0.2 1.3 1 0 0 1 1 1 1 CS domain HMA PF00403.21 gi|116754116|ref|YP_843234.1| - 0.16 12.1 0.6 0.42 10.7 0.4 1.8 1 1 0 1 1 1 0 Heavy-metal-associated domain DUF367 PF04034.8 gi|116754117|ref|YP_843235.1| - 2.3e-46 156.5 0.0 2.7e-46 156.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|116754117|ref|YP_843235.1| - 1.2e-14 53.6 0.1 1.8e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI tRNA-synt_1 PF00133.17 gi|116754118|ref|YP_843236.1| - 1.3e-136 456.1 0.2 1.8e-135 452.2 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|116754118|ref|YP_843236.1| - 1.8e-37 128.4 0.0 3.5e-37 127.5 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|116754118|ref|YP_843236.1| - 8.7e-25 87.1 0.5 5.1e-15 55.0 0.1 3.1 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|116754118|ref|YP_843236.1| - 1.5e-06 27.5 0.0 0.0064 15.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|116754118|ref|YP_843236.1| - 0.00049 19.4 0.0 0.0018 17.5 0.0 1.9 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1c PF00749.16 gi|116754118|ref|YP_843236.1| - 0.08 11.5 0.4 13 4.3 0.0 2.8 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain CYTH PF01928.16 gi|116754119|ref|YP_843237.1| - 9.9e-32 110.1 0.4 1.1e-31 109.9 0.3 1.1 1 0 0 1 1 1 1 CYTH domain MTD PF01993.13 gi|116754120|ref|YP_843238.1| - 4.3e-91 304.7 2.1 4.9e-91 304.6 1.5 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Glyco_trans_4_4 PF13579.1 gi|116754120|ref|YP_843238.1| - 0.014 15.5 0.0 3.8 7.6 0.0 2.3 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain F420_oxidored PF03807.12 gi|116754120|ref|YP_843238.1| - 0.12 12.7 1.4 28 5.2 0.1 3.1 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent LTD PF00932.14 gi|116754121|ref|YP_843239.1| - 1e-07 32.0 0.2 3.1e-07 30.4 0.1 1.7 1 1 0 1 1 1 1 Lamin Tail Domain NicO PF03824.11 gi|116754121|ref|YP_843239.1| - 0.049 12.9 0.1 0.069 12.4 0.1 1.1 1 0 0 1 1 1 0 High-affinity nickel-transport protein HEAT_2 PF13646.1 gi|116754122|ref|YP_843240.1| - 6.6e-46 154.5 5.2 9.7e-19 67.4 1.6 3.1 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.11 gi|116754122|ref|YP_843240.1| - 1.8e-38 127.0 7.4 1e-07 31.6 0.1 5.3 5 0 0 5 5 5 5 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|116754122|ref|YP_843240.1| - 1.1e-27 93.5 1.5 0.00028 20.7 0.0 6.1 6 0 0 6 6 6 5 HEAT repeat HEAT_EZ PF13513.1 gi|116754122|ref|YP_843240.1| - 4.2e-20 71.6 8.5 0.0011 19.3 0.2 5.4 5 0 0 5 5 5 5 HEAT-like repeat Arm PF00514.18 gi|116754122|ref|YP_843240.1| - 1.7e-15 56.1 5.0 0.0012 18.5 0.1 5.3 1 1 4 5 5 5 4 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.2 gi|116754122|ref|YP_843240.1| - 1.5e-05 25.2 0.0 2.4 8.6 0.0 4.6 1 1 4 5 5 5 1 Vacuolar 14 Fab1-binding region Adaptin_N PF01602.15 gi|116754122|ref|YP_843240.1| - 0.00013 20.4 0.0 0.0096 14.2 0.0 2.2 1 1 1 2 2 2 2 Adaptin N terminal region Aconitase_B_N PF11791.3 gi|116754122|ref|YP_843240.1| - 0.0079 16.0 0.2 0.49 10.2 0.1 2.6 1 1 1 2 2 2 1 Aconitate B N-terminal domain ERAP1_C PF11838.3 gi|116754122|ref|YP_843240.1| - 0.036 13.2 0.1 4.1 6.5 0.0 2.7 1 1 2 3 3 3 0 ERAP1-like C-terminal domain Cnd1 PF12717.2 gi|116754122|ref|YP_843240.1| - 0.052 13.3 0.2 38 4.0 0.0 3.9 3 2 1 5 5 5 0 non-SMC mitotic condensation complex subunit 1 DUF3385 PF11865.3 gi|116754122|ref|YP_843240.1| - 0.13 12.1 0.1 4.2 7.2 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF3385) ALF PF03752.8 gi|116754122|ref|YP_843240.1| - 0.15 11.9 7.9 3.4 7.6 0.1 4.2 3 1 1 4 4 4 0 Short repeats of unknown function PHP PF02811.14 gi|116754123|ref|YP_843241.1| - 2.7e-15 56.5 0.4 4.5e-15 55.8 0.3 1.5 1 1 0 1 1 1 1 PHP domain DUF4010 PF13194.1 gi|116754124|ref|YP_843242.1| - 1.5e-58 197.5 24.0 1.5e-58 197.5 16.6 3.4 3 1 1 4 4 4 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|116754124|ref|YP_843242.1| - 2.7e-11 43.4 11.6 2.7e-11 43.4 8.1 3.5 3 2 0 3 3 3 1 MgtC family EamA PF00892.15 gi|116754125|ref|YP_843243.1| - 0.00049 20.1 5.7 0.00049 20.1 3.9 3.0 3 1 1 4 4 4 2 EamA-like transporter family DUF1616 PF07760.6 gi|116754126|ref|YP_843244.1| - 1.3e-21 76.9 1.0 2.4e-21 76.1 0.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4399 PF14347.1 gi|116754126|ref|YP_843244.1| - 4.2e-08 33.0 0.0 0.13 12.2 0.0 5.4 6 0 0 6 6 6 2 Domain of unknown function (DUF4399) BiPBP_C PF06832.7 gi|116754126|ref|YP_843244.1| - 1e-07 31.7 7.5 1.1 9.2 0.0 6.8 7 0 0 7 7 7 3 Penicillin-Binding Protein C-terminus Family Bac_rhamnosid_N PF08531.5 gi|116754126|ref|YP_843244.1| - 4.4e-05 23.0 0.0 0.12 11.8 0.0 3.6 3 1 0 3 3 3 2 Alpha-L-rhamnosidase N-terminal domain Y_Y_Y PF07495.8 gi|116754126|ref|YP_843244.1| - 6.6e-05 22.5 0.0 0.2 11.4 0.0 4.1 5 0 0 5 5 5 2 Y_Y_Y domain Big_3_4 PF13754.1 gi|116754126|ref|YP_843244.1| - 0.00079 19.6 35.6 0.14 12.4 0.4 8.8 8 0 0 8 8 8 3 Bacterial Ig-like domain (group 3) DUF755 PF05501.6 gi|116754126|ref|YP_843244.1| - 0.0026 17.7 2.0 0.0066 16.4 1.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF755) PGK PF00162.14 gi|116754128|ref|YP_843246.1| - 4.5e-119 397.4 0.1 5.1e-119 397.2 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DHH PF01368.15 gi|116754129|ref|YP_843247.1| - 2.1e-11 43.6 0.0 7.8e-11 41.8 0.0 1.8 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|116754129|ref|YP_843247.1| - 1.1e-06 28.2 2.5 2.6e-06 27.0 1.8 1.7 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.13 gi|116754130|ref|YP_843248.1| - 2.5e-48 162.8 1.8 2e-23 82.5 0.0 2.3 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|116754130|ref|YP_843248.1| - 4e-23 80.7 2.1 1.3e-12 47.1 0.0 3.1 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|116754130|ref|YP_843248.1| - 1e-09 38.5 0.5 3.3e-05 24.0 0.1 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|116754130|ref|YP_843248.1| - 1.9e-05 24.9 1.7 0.0034 17.7 0.1 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|116754130|ref|YP_843248.1| - 4.8e-05 23.0 0.5 0.3 10.7 0.1 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|116754130|ref|YP_843248.1| - 0.00012 21.3 0.5 0.009 15.0 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|116754130|ref|YP_843248.1| - 0.00031 20.1 0.1 0.53 9.6 0.0 2.6 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ldh_1_N PF00056.18 gi|116754130|ref|YP_843248.1| - 0.0012 18.6 1.0 0.59 9.9 0.1 2.4 2 0 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|116754130|ref|YP_843248.1| - 0.0018 18.2 0.1 0.031 14.3 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Shikimate_DH PF01488.15 gi|116754130|ref|YP_843248.1| - 0.0026 17.8 0.4 2.3 8.3 0.1 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|116754130|ref|YP_843248.1| - 0.0028 17.5 1.4 0.68 9.7 0.1 2.9 3 0 0 3 3 2 1 ThiF family XdhC_C PF13478.1 gi|116754130|ref|YP_843248.1| - 0.0033 17.7 0.1 2.1 8.6 0.1 2.6 2 1 0 2 2 2 2 XdhC Rossmann domain DUF1188 PF06690.6 gi|116754130|ref|YP_843248.1| - 0.0063 15.6 0.3 0.62 9.1 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1188) Pyr_redox_2 PF07992.9 gi|116754130|ref|YP_843248.1| - 0.0067 16.3 0.2 0.18 11.6 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|116754130|ref|YP_843248.1| - 0.011 15.1 0.2 4.5 6.7 0.0 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|116754130|ref|YP_843248.1| - 0.024 13.6 0.4 0.024 13.6 0.3 1.5 2 0 0 2 2 2 0 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|116754130|ref|YP_843248.1| - 0.044 12.9 0.0 2.4 7.3 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|116754130|ref|YP_843248.1| - 0.062 12.2 0.9 0.18 10.6 0.0 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_Gly3P_dh_N PF01210.18 gi|116754130|ref|YP_843248.1| - 0.092 12.4 0.0 3.3 7.4 0.0 2.8 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_9 PF13454.1 gi|116754130|ref|YP_843248.1| - 0.14 11.9 0.1 0.47 10.2 0.0 1.9 2 1 0 2 2 2 0 FAD-NAD(P)-binding GTP_EFTU PF00009.22 gi|116754131|ref|YP_843249.1| - 2.6e-58 196.5 0.0 4.4e-58 195.8 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|116754131|ref|YP_843249.1| - 1.8e-29 101.7 0.4 1.5e-28 98.7 0.1 2.7 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|116754131|ref|YP_843249.1| - 2.2e-25 88.3 0.3 9.4e-25 86.3 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|116754131|ref|YP_843249.1| - 1.8e-24 85.3 2.0 2.3e-24 85.0 0.4 2.0 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|116754131|ref|YP_843249.1| - 2.6e-14 53.1 0.9 7.6e-14 51.5 0.6 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|116754131|ref|YP_843249.1| - 0.00047 20.0 0.0 0.001 18.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF3748 PF12566.3 gi|116754131|ref|YP_843249.1| - 0.043 13.7 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3748) Ras PF00071.17 gi|116754131|ref|YP_843249.1| - 0.099 12.0 0.0 0.29 10.5 0.0 1.7 2 0 0 2 2 2 0 Ras family GTP_EFTU PF00009.22 gi|116754132|ref|YP_843250.1| - 8.7e-59 198.1 0.0 1.4e-58 197.4 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|116754132|ref|YP_843250.1| - 1.2e-32 112.0 1.4 4.4e-32 110.1 0.3 2.4 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|116754132|ref|YP_843250.1| - 3.3e-17 62.3 3.0 3.6e-17 62.2 0.4 2.4 4 0 0 4 4 4 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|116754132|ref|YP_843250.1| - 1.7e-07 31.2 0.0 4.5e-07 29.8 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|116754132|ref|YP_843250.1| - 8.8e-06 25.2 0.4 2e-05 24.1 0.3 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|116754132|ref|YP_843250.1| - 4.2e-05 24.0 0.0 0.00085 19.8 0.0 2.7 2 1 0 2 2 2 1 Miro-like protein Gtr1_RagA PF04670.7 gi|116754132|ref|YP_843250.1| - 0.00032 19.9 0.0 0.0043 16.2 0.0 2.1 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|116754132|ref|YP_843250.1| - 0.026 14.3 0.0 3.7 7.3 0.0 2.5 1 1 1 2 2 2 0 Dynamin family FeoB_N PF02421.13 gi|116754132|ref|YP_843250.1| - 0.035 13.4 0.2 0.31 10.2 0.1 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.13 gi|116754132|ref|YP_843250.1| - 0.14 11.1 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 Septin Ribosomal_S10 PF00338.17 gi|116754133|ref|YP_843251.1| - 1.7e-29 101.4 0.0 1.9e-29 101.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e MMR_HSR1 PF01926.18 gi|116754134|ref|YP_843252.1| - 2.4e-13 50.0 0.0 2.9e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|116754134|ref|YP_843252.1| - 1.7e-11 43.6 0.0 2.1e-10 40.1 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|116754134|ref|YP_843252.1| - 2.1e-06 27.6 0.0 0.0016 18.3 0.0 2.2 1 1 1 2 2 2 2 Dynamin family GTP_EFTU PF00009.22 gi|116754134|ref|YP_843252.1| - 2.8e-05 23.6 0.0 0.0076 15.6 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Ras PF00071.17 gi|116754134|ref|YP_843252.1| - 0.0022 17.4 0.0 0.7 9.2 0.0 2.1 2 0 0 2 2 2 2 Ras family Miro PF08477.8 gi|116754134|ref|YP_843252.1| - 0.0044 17.5 0.0 0.0087 16.5 0.0 1.5 2 0 0 2 2 1 1 Miro-like protein ABC_tran PF00005.22 gi|116754134|ref|YP_843252.1| - 0.007 16.6 0.0 0.0081 16.4 0.0 1.5 1 1 0 1 1 1 1 ABC transporter DUF258 PF03193.11 gi|116754134|ref|YP_843252.1| - 0.014 14.5 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|116754134|ref|YP_843252.1| - 0.016 15.5 0.1 0.15 12.3 0.0 2.3 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|116754134|ref|YP_843252.1| - 0.017 14.6 0.0 0.03 13.7 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.1 gi|116754134|ref|YP_843252.1| - 0.024 15.4 0.1 0.054 14.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|116754134|ref|YP_843252.1| - 0.024 14.3 0.0 0.035 13.8 0.0 1.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRPRB PF09439.5 gi|116754134|ref|YP_843252.1| - 0.027 13.6 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.1 gi|116754134|ref|YP_843252.1| - 0.039 13.4 0.0 0.073 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|116754134|ref|YP_843252.1| - 0.041 13.8 0.0 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arf PF00025.16 gi|116754134|ref|YP_843252.1| - 0.15 11.3 0.0 0.28 10.3 0.0 1.5 2 0 0 2 2 2 0 ADP-ribosylation factor family WIYLD PF10440.4 gi|116754135|ref|YP_843253.1| - 0.074 12.9 0.1 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain DapB_C PF05173.9 gi|116754136|ref|YP_843254.1| - 3e-47 159.7 0.2 3.9e-47 159.3 0.1 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|116754136|ref|YP_843254.1| - 1.1e-28 99.6 0.1 2e-28 98.8 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|116754136|ref|YP_843254.1| - 0.012 14.6 0.1 0.024 13.6 0.0 1.4 2 0 0 2 2 2 0 Saccharopine dehydrogenase DHDPS PF00701.17 gi|116754137|ref|YP_843255.1| - 4.4e-101 337.2 0.0 5e-101 337.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.9 gi|116754137|ref|YP_843255.1| - 0.05 12.6 0.0 0.097 11.7 0.0 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG YjgF_endoribonc PF14588.1 gi|116754137|ref|YP_843255.1| - 0.077 12.9 0.1 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 YjgF/chorismate_mutase-like, putative endoribonuclease Retinin_C PF04527.7 gi|116754137|ref|YP_843255.1| - 0.1 12.5 0.5 0.62 10.0 0.2 2.2 2 0 0 2 2 2 0 Drosophila Retinin like protein Ribosomal_S17e PF00833.13 gi|116754138|ref|YP_843256.1| - 3.6e-13 49.3 0.2 4.1e-13 49.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 SWIRM PF04433.12 gi|116754138|ref|YP_843256.1| - 0.021 14.9 0.1 0.025 14.7 0.1 1.1 1 0 0 1 1 1 0 SWIRM domain Phos_pyr_kin PF08543.7 gi|116754139|ref|YP_843257.1| - 1.2e-83 280.1 0.3 1.4e-83 279.8 0.2 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|116754139|ref|YP_843257.1| - 6.7e-65 217.6 0.1 1e-64 217.0 0.0 1.3 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|116754139|ref|YP_843257.1| - 3.9e-12 45.9 0.4 6.4e-12 45.2 0.3 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Clathrin_H_link PF13838.1 gi|116754140|ref|YP_843258.1| - 4.7e-08 32.8 10.3 0.25 11.2 0.8 4.9 3 2 2 5 5 5 4 Clathrin-H-link Ribosomal_S21 PF01165.15 gi|116754140|ref|YP_843258.1| - 0.0063 15.9 5.0 0.019 14.3 0.1 2.7 3 0 0 3 3 3 1 Ribosomal protein S21 TFIIB PF00382.14 gi|116754140|ref|YP_843258.1| - 0.011 15.4 2.1 0.38 10.6 0.0 3.7 5 0 0 5 5 5 0 Transcription factor TFIIB repeat TPR_7 PF13176.1 gi|116754140|ref|YP_843258.1| - 0.019 14.7 1.1 14 5.7 0.0 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat Phage_terminase PF10668.4 gi|116754140|ref|YP_843258.1| - 0.098 12.4 0.5 1.7 8.4 0.0 2.9 3 1 1 4 4 4 0 Phage terminase small subunit DUF4358 PF14270.1 gi|116754140|ref|YP_843258.1| - 0.11 12.3 0.9 5.4 6.9 0.1 3.2 1 1 3 4 4 4 0 Domain of unknown function (DUF4358) PPR PF01535.15 gi|116754140|ref|YP_843258.1| - 0.17 11.8 1.1 27 5.0 0.0 2.7 2 0 0 2 2 2 0 PPR repeat PHP_C PF13263.1 gi|116754140|ref|YP_843258.1| - 0.24 10.9 1.1 16 5.0 0.0 3.5 3 0 0 3 3 3 0 PHP-associated DUF61 PF01886.11 gi|116754141|ref|YP_843259.1| - 3e-48 163.0 0.4 3.3e-48 162.8 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Nop PF01798.13 gi|116754142|ref|YP_843260.1| - 1.2e-48 164.2 0.6 1.8e-48 163.6 0.4 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain HIT PF01230.18 gi|116754143|ref|YP_843261.1| - 1.1e-14 54.7 0.0 1.6e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|116754143|ref|YP_843261.1| - 1.1e-10 41.7 0.0 1.5e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|116754143|ref|YP_843261.1| - 2.1e-05 24.1 0.0 2.9e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Enolase_C PF00113.17 gi|116754144|ref|YP_843262.1| - 2.5e-109 364.8 0.0 3e-109 364.5 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|116754144|ref|YP_843262.1| - 3e-62 208.3 0.1 7.3e-62 207.1 0.0 1.7 2 0 0 2 2 2 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|116754144|ref|YP_843262.1| - 0.0089 14.9 0.0 0.039 12.8 0.0 1.8 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|116754144|ref|YP_843262.1| - 0.037 14.5 0.0 0.71 10.4 0.0 2.6 2 0 0 2 2 2 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Kelch_4 PF13418.1 gi|116754145|ref|YP_843263.1| - 7e-08 32.1 0.0 69 3.3 0.0 10.6 14 0 0 14 14 14 0 Galactose oxidase, central domain DPPIV_N PF00930.16 gi|116754145|ref|YP_843263.1| - 1.5e-06 27.0 21.4 0.061 11.9 0.0 9.0 4 4 4 10 10 10 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region PD40 PF07676.7 gi|116754145|ref|YP_843263.1| - 1.1e-05 24.9 65.3 2 8.1 0.1 16.8 20 0 0 20 20 20 8 WD40-like Beta Propeller Repeat Pectate_lyase22 PF14583.1 gi|116754145|ref|YP_843263.1| - 8.2e-05 21.2 3.1 0.28 9.5 0.0 5.5 5 1 1 6 6 6 2 Oligogalacturonate lyase PQQ_3 PF13570.1 gi|116754145|ref|YP_843263.1| - 0.0014 18.7 5.8 0.016 15.4 0.0 5.8 5 0 0 5 5 5 1 PQQ-like domain PQQ PF01011.16 gi|116754145|ref|YP_843263.1| - 0.014 14.9 9.7 3.9 7.1 0.0 8.2 8 0 0 8 8 8 0 PQQ enzyme repeat CobN-Mg_chel PF02514.11 gi|116754146|ref|YP_843264.1| - 0 1114.4 0.0 0 1114.2 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF3479 PF11965.3 gi|116754146|ref|YP_843264.1| - 0.22 11.2 0.0 0.61 9.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) Peripla_BP_2 PF01497.13 gi|116754147|ref|YP_843265.1| - 1.3e-17 63.7 0.0 1.6e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein EF1_GNE PF00736.14 gi|116754148|ref|YP_843266.1| - 3.5e-21 74.6 0.6 3.6e-21 74.6 0.4 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|116754148|ref|YP_843266.1| - 0.12 12.5 2.2 0.27 11.4 0.5 2.0 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF1610 PF07754.6 gi|116754149|ref|YP_843267.1| - 9e-08 32.0 19.0 3.9e-05 23.6 3.6 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) Zn_Tnp_IS91 PF14319.1 gi|116754149|ref|YP_843267.1| - 0.004 16.6 4.5 0.0057 16.1 3.1 1.2 1 0 0 1 1 1 1 Transposase zinc-binding domain FYVE_2 PF02318.11 gi|116754149|ref|YP_843267.1| - 0.041 13.7 4.6 0.049 13.5 3.2 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger C1_3 PF07649.7 gi|116754149|ref|YP_843267.1| - 0.068 13.2 2.4 0.068 13.2 1.6 2.6 1 1 0 2 2 2 0 C1-like domain C1_1 PF00130.17 gi|116754149|ref|YP_843267.1| - 0.19 11.5 8.7 1.5 8.5 0.1 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PolC_DP2 PF03833.8 gi|116754149|ref|YP_843267.1| - 0.25 8.9 4.4 0.26 8.8 3.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Fer4 PF00037.22 gi|116754149|ref|YP_843267.1| - 0.29 10.8 0.2 0.29 10.8 0.2 3.5 4 0 0 4 4 4 0 4Fe-4S binding domain Pput2613-deam PF14427.1 gi|116754149|ref|YP_843267.1| - 0.32 10.6 2.4 0.65 9.6 1.6 1.5 1 1 0 1 1 1 0 Pput_2613-like deaminase zf-Mss51 PF13824.1 gi|116754149|ref|YP_843267.1| - 0.38 10.6 12.2 1.2 9.1 1.3 2.8 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.6 gi|116754149|ref|YP_843267.1| - 0.67 9.6 11.0 0.35 10.5 4.6 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|116754149|ref|YP_843267.1| - 0.74 9.6 11.8 30 4.5 8.2 2.5 1 1 0 1 1 1 0 Double zinc ribbon NMDAR2_C PF10565.4 gi|116754149|ref|YP_843267.1| - 0.76 8.3 5.0 0.79 8.3 3.4 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus zf-LITAF-like PF10601.4 gi|116754149|ref|YP_843267.1| - 2.2 8.1 9.3 3.5 7.5 0.2 3.1 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain zf-ribbon_3 PF13248.1 gi|116754149|ref|YP_843267.1| - 2.5 7.4 15.9 22 4.3 0.0 3.8 2 1 0 2 2 2 0 zinc-ribbon domain Prok-RING_2 PF14445.1 gi|116754149|ref|YP_843267.1| - 2.8 7.9 9.8 12 5.9 6.8 2.1 1 1 0 1 1 1 0 Prokaryotic RING finger family 2 zf-FPG_IleRS PF06827.9 gi|116754149|ref|YP_843267.1| - 3.9 7.2 11.4 12 5.6 3.3 3.5 3 1 0 3 3 3 0 Zinc finger found in FPG and IleRS ADK_lid PF05191.9 gi|116754149|ref|YP_843267.1| - 5 6.8 13.4 7.1 6.3 0.2 3.9 3 1 1 4 4 4 0 Adenylate kinase, active site lid IBR PF01485.16 gi|116754149|ref|YP_843267.1| - 5 7.0 11.1 13 5.7 7.7 1.7 1 1 0 1 1 1 0 IBR domain DUF2296 PF10058.4 gi|116754149|ref|YP_843267.1| - 5.2 6.8 8.6 11 5.8 0.0 3.3 3 1 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Zn-ribbon_8 PF09723.5 gi|116754149|ref|YP_843267.1| - 7.8 6.5 16.7 11 6.0 0.1 3.9 2 1 2 4 4 4 0 Zinc ribbon domain AA_kinase PF00696.23 gi|116754150|ref|YP_843268.1| - 6e-17 61.9 0.0 6.8e-15 55.2 0.0 2.1 1 1 0 1 1 1 1 Amino acid kinase family Lsm_C PF14894.1 gi|116754150|ref|YP_843268.1| - 0.13 11.7 0.1 1.1 8.8 0.0 2.1 2 0 0 2 2 2 0 Lsm C-terminal Ribonuc_red_lgN PF00317.16 gi|116754150|ref|YP_843268.1| - 0.13 12.0 0.0 0.41 10.4 0.0 1.7 2 0 0 2 2 2 0 Ribonucleotide reductase, all-alpha domain NAD_kinase PF01513.16 gi|116754151|ref|YP_843269.1| - 5.3e-53 179.6 0.0 6e-53 179.4 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase Inositol_P PF00459.20 gi|116754152|ref|YP_843270.1| - 2.3e-33 115.6 0.0 3e-33 115.2 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|116754152|ref|YP_843270.1| - 2.4e-05 23.3 0.0 0.00022 20.1 0.0 2.0 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase DMRL_synthase PF00885.14 gi|116754153|ref|YP_843271.1| - 7e-22 77.6 0.7 8.1e-22 77.4 0.5 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase SpoU_sub_bind PF08032.7 gi|116754153|ref|YP_843271.1| - 0.043 13.9 0.1 0.14 12.3 0.0 1.9 1 1 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding Histidinol_dh PF00815.15 gi|116754154|ref|YP_843272.1| - 2e-172 573.4 1.4 2.4e-172 573.2 1.0 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DNA_ligase_A_M PF01068.16 gi|116754155|ref|YP_843273.1| - 3.3e-54 183.3 0.0 5e-54 182.7 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|116754155|ref|YP_843273.1| - 1.1e-46 158.8 0.0 1.4e-43 148.7 0.0 2.3 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|116754155|ref|YP_843273.1| - 1.7e-17 63.5 0.0 3.7e-17 62.4 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|116754155|ref|YP_843273.1| - 0.19 11.3 0.0 28 4.3 0.0 2.6 2 1 1 3 3 3 0 mRNA capping enzyme, catalytic domain Homoserine_dh PF00742.14 gi|116754156|ref|YP_843274.1| - 2.7e-58 196.6 0.2 5.1e-58 195.6 0.1 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|116754156|ref|YP_843274.1| - 9.4e-13 48.5 0.1 1.6e-12 47.8 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|116754156|ref|YP_843274.1| - 0.013 15.1 0.1 0.024 14.2 0.1 1.5 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Saccharop_dh PF03435.13 gi|116754156|ref|YP_843274.1| - 0.036 13.0 0.1 0.055 12.4 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase DXP_reductoisom PF02670.11 gi|116754156|ref|YP_843274.1| - 0.056 13.9 0.2 0.19 12.2 0.1 2.1 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACT PF01842.20 gi|116754157|ref|YP_843275.1| - 0.0011 18.3 0.0 0.004 16.6 0.0 1.9 2 0 0 2 2 2 1 ACT domain Saccharop_dh_N PF04455.7 gi|116754157|ref|YP_843275.1| - 0.0012 18.8 0.3 0.0037 17.3 0.1 1.9 1 1 1 2 2 2 1 LOR/SDH bifunctional enzyme conserved region DUF4409 PF14365.1 gi|116754157|ref|YP_843275.1| - 0.05 13.7 0.1 0.085 13.0 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4409) NosD PF05048.8 gi|116754158|ref|YP_843276.1| - 2.5e-07 30.1 6.1 7.7e-07 28.5 3.6 1.9 1 1 1 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|116754158|ref|YP_843276.1| - 1.4e-06 28.1 10.2 2.2e-06 27.5 7.0 1.3 1 0 0 1 1 1 1 Right handed beta helix region DUF1565 PF07602.6 gi|116754158|ref|YP_843276.1| - 3.9e-05 22.9 2.2 0.00021 20.5 1.5 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) Pectinesterase PF01095.14 gi|116754158|ref|YP_843276.1| - 0.024 13.2 0.3 0.026 13.0 0.2 1.3 1 1 0 1 1 1 0 Pectinesterase DUF2124 PF09897.4 gi|116754159|ref|YP_843277.1| - 3.4e-51 172.8 0.1 3.9e-51 172.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) PspA_IM30 PF04012.7 gi|116754160|ref|YP_843278.1| - 2.2e-31 108.9 26.9 2.5e-31 108.7 18.6 1.0 1 0 0 1 1 1 1 PspA/IM30 family Snf7 PF03357.16 gi|116754160|ref|YP_843278.1| - 0.00098 18.5 11.9 0.00098 18.5 8.3 2.6 1 1 1 3 3 3 1 Snf7 Flagellin_C PF00700.16 gi|116754160|ref|YP_843278.1| - 0.0012 18.9 9.7 0.3 11.2 0.6 3.4 3 0 0 3 3 3 2 Bacterial flagellin C-terminal helical region TMF_DNA_bd PF12329.3 gi|116754160|ref|YP_843278.1| - 0.0088 15.8 10.6 0.0088 15.8 7.4 3.2 2 2 0 2 2 2 1 TATA element modulatory factor 1 DNA binding Arfaptin PF06456.8 gi|116754160|ref|YP_843278.1| - 0.011 15.1 6.5 0.38 10.0 0.7 2.2 1 1 0 2 2 2 0 Arfaptin-like domain Rab5-bind PF09311.6 gi|116754160|ref|YP_843278.1| - 0.082 12.7 18.3 0.21 11.4 12.7 1.8 1 1 0 1 1 1 0 Rabaptin-like protein DUF1664 PF07889.7 gi|116754160|ref|YP_843278.1| - 0.087 12.6 8.4 2.6 7.8 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) DUF3584 PF12128.3 gi|116754160|ref|YP_843278.1| - 0.11 9.7 19.6 0.048 10.9 7.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) AAA_13 PF13166.1 gi|116754160|ref|YP_843278.1| - 0.28 9.5 10.2 0.35 9.2 7.1 1.2 1 0 0 1 1 1 0 AAA domain DUF972 PF06156.8 gi|116754160|ref|YP_843278.1| - 0.29 11.5 14.2 0.29 11.5 3.2 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF972) Baculo_PEP_C PF04513.7 gi|116754160|ref|YP_843278.1| - 0.31 10.8 9.5 0.55 10.0 2.6 2.6 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Phage_GP20 PF06810.6 gi|116754160|ref|YP_843278.1| - 0.31 10.4 12.9 0.039 13.3 4.7 2.4 1 1 1 2 2 2 0 Phage minor structural protein GP20 APG6 PF04111.7 gi|116754160|ref|YP_843278.1| - 0.43 9.5 18.2 0.39 9.7 11.1 2.0 1 1 0 1 1 1 0 Autophagy protein Apg6 NPV_P10 PF05531.7 gi|116754160|ref|YP_843278.1| - 0.43 10.8 7.7 4.2 7.7 1.3 3.2 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF743 PF05332.6 gi|116754160|ref|YP_843278.1| - 0.71 9.8 8.7 1e+02 2.9 5.7 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF743) Spc7 PF08317.6 gi|116754160|ref|YP_843278.1| - 0.83 8.2 17.5 0.54 8.8 4.6 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein FlxA PF14282.1 gi|116754160|ref|YP_843278.1| - 0.9 9.5 13.4 0.28 11.1 4.9 2.5 1 1 1 2 2 2 0 FlxA-like protein YlqD PF11068.3 gi|116754160|ref|YP_843278.1| - 0.95 9.5 16.9 0.048 13.7 3.7 2.9 2 1 1 3 3 2 0 YlqD protein Osmo_CC PF08946.5 gi|116754160|ref|YP_843278.1| - 1.7 8.7 11.0 0.13 12.3 1.2 3.3 2 2 2 4 4 4 0 Osmosensory transporter coiled coil Prominin PF05478.6 gi|116754160|ref|YP_843278.1| - 1.8 5.9 6.4 2.1 5.7 4.4 1.1 1 0 0 1 1 1 0 Prominin PolyA_pol PF01743.15 gi|116754160|ref|YP_843278.1| - 2.2 8.5 5.4 1.8 8.7 0.1 2.5 1 1 1 2 2 2 0 Poly A polymerase head domain DivIC PF04977.10 gi|116754160|ref|YP_843278.1| - 2.5 7.6 25.3 0.099 12.1 3.8 3.6 4 1 0 4 4 3 0 Septum formation initiator IncA PF04156.9 gi|116754160|ref|YP_843278.1| - 3.4 7.2 20.3 0.077 12.5 6.0 2.2 1 1 1 2 2 2 0 IncA protein DUF4200 PF13863.1 gi|116754160|ref|YP_843278.1| - 4.3 7.2 22.5 2.6 8.0 8.8 3.2 1 1 1 3 3 3 0 Domain of unknown function (DUF4200) Spore_III_AF PF09581.5 gi|116754160|ref|YP_843278.1| - 4.6 7.0 8.4 6.5 6.5 5.8 1.3 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) CENP-F_leu_zip PF10473.4 gi|116754160|ref|YP_843278.1| - 5.4 6.8 21.7 3.5 7.4 7.2 2.6 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fzo_mitofusin PF04799.8 gi|116754160|ref|YP_843278.1| - 7.1 5.9 8.4 12 5.2 3.6 2.6 1 1 2 3 3 3 0 fzo-like conserved region Striatin PF08232.7 gi|116754160|ref|YP_843278.1| - 7.2 6.9 14.2 0.24 11.6 2.6 2.3 1 1 1 2 2 2 0 Striatin family COG2 PF06148.6 gi|116754160|ref|YP_843278.1| - 8.5 6.2 13.8 13 5.7 0.1 3.5 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 V_ATPase_I PF01496.14 gi|116754160|ref|YP_843278.1| - 8.8 4.0 11.9 3.3 5.4 0.6 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Peptidase_M48 PF01435.13 gi|116754163|ref|YP_843281.1| - 2.2e-40 138.6 0.0 2.9e-40 138.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|116754163|ref|YP_843281.1| - 1.2e-06 27.6 4.1 1.6e-05 24.0 0.4 2.6 1 1 1 2 2 2 2 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|116754163|ref|YP_843281.1| - 0.17 11.9 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 Peptidase MA superfamily Tic20 PF09685.5 gi|116754163|ref|YP_843281.1| - 2.8 7.9 12.2 0.85 9.6 0.3 2.4 2 0 0 2 2 2 0 Tic20-like protein 2TM PF13239.1 gi|116754163|ref|YP_843281.1| - 5.3 7.1 9.4 11 6.1 2.8 2.3 2 0 0 2 2 2 0 2TM domain Aconitase_C PF00694.14 gi|116754164|ref|YP_843282.1| - 7.6e-21 74.5 0.0 1.5e-20 73.6 0.0 1.5 1 1 0 1 1 1 1 Aconitase C-terminal domain Iso_dh PF00180.15 gi|116754166|ref|YP_843284.1| - 3.3e-93 312.4 0.0 8.7e-93 311.0 0.0 1.5 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF3521 PF12035.3 gi|116754166|ref|YP_843284.1| - 0.97 9.3 4.6 0.34 10.7 0.2 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3521) ABC_tran PF00005.22 gi|116754167|ref|YP_843285.1| - 3.3e-61 205.5 0.0 1e-30 106.8 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|116754167|ref|YP_843285.1| - 1.2e-25 89.6 0.1 4.6e-19 68.5 0.1 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|116754167|ref|YP_843285.1| - 8.9e-23 81.6 1.2 1.8e-08 34.7 0.2 4.1 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|116754167|ref|YP_843285.1| - 3.6e-11 42.7 0.0 1.9e-05 24.0 0.0 2.6 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|116754167|ref|YP_843285.1| - 2e-08 34.4 7.7 0.0018 18.3 0.7 3.8 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|116754167|ref|YP_843285.1| - 4.9e-08 33.1 3.9 0.0032 17.4 0.2 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|116754167|ref|YP_843285.1| - 1.5e-07 30.9 5.2 0.0017 17.8 0.7 3.4 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|116754167|ref|YP_843285.1| - 1.7e-06 27.4 1.2 0.025 14.1 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain NACHT PF05729.7 gi|116754167|ref|YP_843285.1| - 5.1e-06 26.2 2.6 0.017 14.7 0.0 2.8 2 1 0 2 2 2 2 NACHT domain AAA_15 PF13175.1 gi|116754167|ref|YP_843285.1| - 6e-06 25.5 0.0 0.3 10.0 0.0 3.8 4 0 0 4 4 4 1 AAA ATPase domain AAA_18 PF13238.1 gi|116754167|ref|YP_843285.1| - 6.3e-06 26.5 0.0 0.13 12.5 0.0 3.0 3 0 0 3 3 2 2 AAA domain DUF258 PF03193.11 gi|116754167|ref|YP_843285.1| - 1.4e-05 24.3 0.1 0.031 13.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|116754167|ref|YP_843285.1| - 1.5e-05 25.8 0.2 0.051 14.4 0.0 3.0 3 1 0 3 3 2 1 AAA domain AAA PF00004.24 gi|116754167|ref|YP_843285.1| - 2.3e-05 24.5 0.0 0.065 13.4 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|116754167|ref|YP_843285.1| - 2.5e-05 23.9 0.3 0.12 12.1 0.0 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|116754167|ref|YP_843285.1| - 3.5e-05 23.4 0.1 0.22 11.3 0.0 3.5 3 0 0 3 3 3 1 Part of AAA domain IstB_IS21 PF01695.12 gi|116754167|ref|YP_843285.1| - 4.1e-05 23.0 2.6 0.88 8.9 0.0 4.0 4 0 0 4 4 4 1 IstB-like ATP binding protein AAA_10 PF12846.2 gi|116754167|ref|YP_843285.1| - 7.6e-05 22.2 1.3 0.36 10.2 0.0 3.2 3 0 0 3 3 3 2 AAA-like domain Mg_chelatase PF01078.16 gi|116754167|ref|YP_843285.1| - 0.00013 21.1 0.3 0.021 13.9 0.0 3.2 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|116754167|ref|YP_843285.1| - 0.00014 21.6 4.0 0.4 10.6 0.3 4.5 3 2 0 3 3 2 1 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|116754167|ref|YP_843285.1| - 0.00049 19.0 0.2 0.31 9.8 0.2 2.3 2 0 0 2 2 2 1 NB-ARC domain UPF0079 PF02367.12 gi|116754167|ref|YP_843285.1| - 0.00049 19.7 0.8 0.15 11.7 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 DUF87 PF01935.12 gi|116754167|ref|YP_843285.1| - 0.00055 19.8 1.2 0.99 9.1 0.1 2.5 2 0 0 2 2 2 2 Domain of unknown function DUF87 Zeta_toxin PF06414.7 gi|116754167|ref|YP_843285.1| - 0.00064 18.8 0.1 0.38 9.8 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin KaiC PF06745.8 gi|116754167|ref|YP_843285.1| - 0.00076 18.6 0.0 0.95 8.5 0.0 2.3 2 0 0 2 2 2 2 KaiC TrwB_AAD_bind PF10412.4 gi|116754167|ref|YP_843285.1| - 0.0011 17.7 0.0 0.8 8.2 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Pox_A32 PF04665.7 gi|116754167|ref|YP_843285.1| - 0.0012 18.1 1.2 0.86 8.8 0.0 2.6 3 0 0 3 3 2 2 Poxvirus A32 protein AAA_30 PF13604.1 gi|116754167|ref|YP_843285.1| - 0.0017 17.9 0.3 2.6 7.5 0.0 2.8 3 0 0 3 3 3 0 AAA domain DEAD PF00270.24 gi|116754167|ref|YP_843285.1| - 0.002 17.6 0.0 0.43 10.0 0.0 2.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_23 PF13476.1 gi|116754167|ref|YP_843285.1| - 0.0029 17.9 0.8 0.52 10.6 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|116754167|ref|YP_843285.1| - 0.0031 17.2 0.2 0.41 10.3 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.20 gi|116754167|ref|YP_843285.1| - 0.0032 16.9 0.1 1.4 8.3 0.0 2.7 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain T2SE PF00437.15 gi|116754167|ref|YP_843285.1| - 0.0042 16.0 0.0 0.23 10.3 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|116754167|ref|YP_843285.1| - 0.0051 16.3 0.7 2.1 7.7 0.1 2.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF3987 PF13148.1 gi|116754167|ref|YP_843285.1| - 0.0051 15.4 0.1 0.34 9.4 0.0 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF3987) PduV-EutP PF10662.4 gi|116754167|ref|YP_843285.1| - 0.0057 16.1 1.3 1.1 8.7 0.1 2.7 3 0 0 3 3 2 1 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.1 gi|116754167|ref|YP_843285.1| - 0.0058 16.5 4.1 1 9.2 0.4 3.0 2 2 1 3 3 3 1 AAA domain AAA_24 PF13479.1 gi|116754167|ref|YP_843285.1| - 0.0068 16.0 1.0 3.4 7.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|116754167|ref|YP_843285.1| - 0.008 16.6 0.0 4.5 7.8 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein RNA_helicase PF00910.17 gi|116754167|ref|YP_843285.1| - 0.0088 16.2 0.0 1.6 8.9 0.0 2.5 2 0 0 2 2 2 1 RNA helicase Sigma54_activat PF00158.21 gi|116754167|ref|YP_843285.1| - 0.016 14.7 1.5 1.6 8.1 0.0 3.1 3 0 0 3 3 3 0 Sigma-54 interaction domain ResIII PF04851.10 gi|116754167|ref|YP_843285.1| - 0.016 15.0 0.0 1.2 8.9 0.0 2.8 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit PEPCK_ATP PF01293.15 gi|116754167|ref|YP_843285.1| - 0.018 13.6 0.0 2.3 6.6 0.0 2.3 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase APS_kinase PF01583.15 gi|116754167|ref|YP_843285.1| - 0.018 14.6 0.1 5.1 6.7 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase PRK PF00485.13 gi|116754167|ref|YP_843285.1| - 0.019 14.5 0.0 5.2 6.5 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Myosin_head PF00063.16 gi|116754167|ref|YP_843285.1| - 0.022 12.8 0.2 2.2 6.1 0.0 2.1 2 0 0 2 2 2 0 Myosin head (motor domain) PhoH PF02562.11 gi|116754167|ref|YP_843285.1| - 0.025 13.8 0.1 5.9 6.0 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein NTPase_1 PF03266.10 gi|116754167|ref|YP_843285.1| - 0.031 14.0 0.3 7.6 6.2 0.1 2.5 2 0 0 2 2 2 0 NTPase Septin PF00735.13 gi|116754167|ref|YP_843285.1| - 0.032 13.2 0.1 5.1 6.0 0.0 2.2 2 0 0 2 2 2 0 Septin CbiA PF01656.18 gi|116754167|ref|YP_843285.1| - 0.033 13.5 0.0 2.4 7.4 0.0 2.4 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain TrkA_C PF02080.16 gi|116754167|ref|YP_843285.1| - 0.036 13.6 0.0 0.56 9.8 0.0 2.5 2 0 0 2 2 2 0 TrkA-C domain cobW PF02492.14 gi|116754167|ref|YP_843285.1| - 0.039 13.4 0.2 7.1 6.0 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.15 gi|116754167|ref|YP_843285.1| - 0.042 12.5 0.0 0.09 11.4 0.0 1.5 2 0 0 2 2 2 0 G-protein alpha subunit DUF188 PF02639.9 gi|116754167|ref|YP_843285.1| - 0.049 13.0 0.2 4.3 6.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized BCR, YaiI/YqxD family COG1671 MMR_HSR1 PF01926.18 gi|116754167|ref|YP_843285.1| - 0.11 12.5 0.0 18 5.3 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF2075 PF09848.4 gi|116754167|ref|YP_843285.1| - 0.13 11.2 0.0 1.8 7.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_13 PF13166.1 gi|116754167|ref|YP_843285.1| - 0.21 10.0 0.4 24 3.1 0.0 3.0 4 0 0 4 4 4 0 AAA domain DLIC PF05783.6 gi|116754167|ref|YP_843285.1| - 0.21 10.1 0.1 4.2 5.9 0.0 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) BPD_transp_1 PF00528.17 gi|116754168|ref|YP_843286.1| - 1.4e-19 70.2 11.7 1.4e-19 70.2 8.1 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|116754168|ref|YP_843286.1| - 0.0011 18.2 0.1 0.0011 18.2 0.1 3.5 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|116754169|ref|YP_843287.1| - 2e-34 118.7 11.9 2e-34 118.7 8.2 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_1_5 PF13737.1 gi|116754170|ref|YP_843288.1| - 1.2e-28 99.4 0.0 2.9e-27 95.0 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|116754170|ref|YP_843288.1| - 1.9e-20 73.3 0.4 4.5e-20 72.1 0.2 1.6 1 1 0 1 1 1 1 Transposase DDE domain rve PF00665.21 gi|116754170|ref|YP_843288.1| - 0.12 12.4 0.1 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain Ion_trans PF00520.26 gi|116754171|ref|YP_843289.1| - 2.4e-22 79.1 6.3 3.1e-22 78.8 4.4 1.1 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.11 gi|116754171|ref|YP_843289.1| - 1.6e-13 50.1 1.0 1.6e-13 50.1 0.7 1.7 2 0 0 2 2 2 1 Ion channel zinc_ribbon_2 PF13240.1 gi|116754171|ref|YP_843289.1| - 0.039 13.4 0.2 0.064 12.7 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|116754171|ref|YP_843289.1| - 0.1 11.8 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain V4R PF02830.13 gi|116754171|ref|YP_843289.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 V4R domain PKD_channel PF08016.7 gi|116754171|ref|YP_843289.1| - 0.24 9.7 5.2 0.025 13.0 0.3 1.7 2 0 0 2 2 2 0 Polycystin cation channel CTP_synth_N PF06418.9 gi|116754172|ref|YP_843290.1| - 2.9e-125 416.9 0.2 3.9e-125 416.5 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|116754172|ref|YP_843290.1| - 6.6e-53 179.0 0.0 1e-52 178.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|116754172|ref|YP_843290.1| - 7.5e-09 35.3 0.0 8.2e-08 31.9 0.0 2.3 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|116754172|ref|YP_843290.1| - 9.2e-08 31.7 0.0 1.4e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|116754172|ref|YP_843290.1| - 0.03 13.9 0.0 0.055 13.0 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain ArsA_ATPase PF02374.10 gi|116754172|ref|YP_843290.1| - 0.14 11.2 0.0 1.7 7.6 0.0 2.2 2 0 0 2 2 2 0 Anion-transporting ATPase Tubulin_C PF03953.12 gi|116754172|ref|YP_843290.1| - 0.19 11.7 0.0 0.48 10.4 0.0 1.6 1 0 0 1 1 1 0 Tubulin C-terminal domain Trm112p PF03966.11 gi|116754174|ref|YP_843292.1| - 6.3e-13 48.8 0.3 1.1e-12 48.1 0.2 1.4 1 0 0 1 1 1 1 Trm112p-like protein Lar_restr_allev PF14354.1 gi|116754174|ref|YP_843292.1| - 0.00083 19.6 0.1 0.001 19.2 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar ADK_lid PF05191.9 gi|116754174|ref|YP_843292.1| - 0.0016 18.0 0.7 0.018 14.7 0.0 2.2 2 0 0 2 2 2 1 Adenylate kinase, active site lid Prim_Zn_Ribbon PF08273.7 gi|116754174|ref|YP_843292.1| - 0.0076 16.2 0.1 0.0094 16.0 0.1 1.1 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase Nudix_N_2 PF14803.1 gi|116754174|ref|YP_843292.1| - 0.0085 15.7 1.2 0.022 14.4 0.8 1.7 1 1 0 1 1 1 1 Nudix N-terminal Elf1 PF05129.8 gi|116754174|ref|YP_843292.1| - 0.0094 15.6 0.0 0.01 15.5 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like RNA_POL_M_15KD PF02150.11 gi|116754174|ref|YP_843292.1| - 0.015 14.9 0.9 0.039 13.6 0.6 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.15 gi|116754174|ref|YP_843292.1| - 0.018 14.8 0.1 3.8 7.4 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin DUF35_N PF12172.3 gi|116754174|ref|YP_843292.1| - 0.025 14.5 0.9 3.4 7.7 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1644 PF07800.7 gi|116754174|ref|YP_843292.1| - 0.029 14.2 0.3 0.035 13.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1644) A2L_zn_ribbon PF08792.5 gi|116754174|ref|YP_843292.1| - 0.051 13.0 0.2 9.2 5.8 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain RRN7 PF11781.3 gi|116754174|ref|YP_843292.1| - 0.078 12.4 3.6 0.64 9.5 2.2 2.2 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 TF_Zn_Ribbon PF08271.7 gi|116754174|ref|YP_843292.1| - 0.097 12.0 5.4 0.34 10.2 3.7 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|116754174|ref|YP_843292.1| - 0.1 12.4 0.5 0.2 11.5 0.4 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|116754174|ref|YP_843292.1| - 0.49 9.6 0.1 0.49 9.6 0.1 2.0 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-IS66 PF13005.2 gi|116754174|ref|YP_843292.1| - 0.67 9.9 3.9 3 7.8 0.1 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 PTH2 PF01981.11 gi|116754175|ref|YP_843293.1| - 4.6e-40 135.9 0.0 5.2e-40 135.7 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 NPCBM_assoc PF10633.4 gi|116754176|ref|YP_843294.1| - 0.00015 21.6 0.0 0.6 10.1 0.0 2.6 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase MMPL PF03176.10 gi|116754177|ref|YP_843295.1| - 5.1e-54 183.2 19.5 4.7e-29 101.1 2.0 2.1 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|116754177|ref|YP_843295.1| - 1.2e-14 54.0 16.2 6.1e-08 32.2 2.4 2.6 2 1 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|116754177|ref|YP_843295.1| - 1.6e-08 34.0 8.0 1.6e-08 34.0 5.5 2.5 2 0 0 2 2 2 1 Protein export membrane protein Patched PF02460.13 gi|116754177|ref|YP_843295.1| - 6.8e-08 30.9 23.4 7.9e-05 20.7 9.6 2.9 3 0 0 3 3 3 2 Patched family ACR_tran PF00873.14 gi|116754177|ref|YP_843295.1| - 1.2e-06 26.3 28.7 0.0017 15.9 7.2 2.9 2 1 1 3 3 3 2 AcrB/AcrD/AcrF family HTH_5 PF01022.15 gi|116754178|ref|YP_843296.1| - 9.5e-06 25.1 0.0 2.4e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.11 gi|116754178|ref|YP_843296.1| - 0.0011 19.0 0.1 0.0038 17.2 0.0 1.9 2 0 0 2 2 2 1 Penicillinase repressor TrmB PF01978.14 gi|116754178|ref|YP_843296.1| - 0.015 14.9 0.1 0.05 13.3 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|116754178|ref|YP_843296.1| - 0.029 14.1 0.0 0.056 13.2 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|116754178|ref|YP_843296.1| - 0.038 13.5 0.2 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain PhoU PF01895.14 gi|116754178|ref|YP_843296.1| - 0.052 13.9 3.0 0.52 10.8 0.9 2.3 2 0 0 2 2 2 0 PhoU domain Cytochrom_B562 PF07361.6 gi|116754178|ref|YP_843296.1| - 0.053 13.9 0.0 0.092 13.1 0.0 1.4 1 0 0 1 1 1 0 Cytochrome b562 HTH_11 PF08279.7 gi|116754178|ref|YP_843296.1| - 0.064 12.9 0.2 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_20 PF12840.2 gi|116754178|ref|YP_843296.1| - 0.089 12.6 0.0 0.27 11.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Gp58 PF07902.6 gi|116754178|ref|YP_843296.1| - 0.097 10.8 0.1 0.13 10.4 0.1 1.1 1 0 0 1 1 1 0 gp58-like protein MarR_2 PF12802.2 gi|116754178|ref|YP_843296.1| - 0.11 12.1 0.1 0.26 11.0 0.0 1.8 2 0 0 2 2 2 0 MarR family DUF935 PF06074.7 gi|116754178|ref|YP_843296.1| - 0.12 11.0 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF935) DUF502 PF04367.8 gi|116754180|ref|YP_843298.1| - 0.11 12.2 1.7 6.7 6.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF502) Aminotran_5 PF00266.14 gi|116754182|ref|YP_843300.1| - 6.3e-94 314.7 0.0 7.3e-94 314.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|116754182|ref|YP_843300.1| - 1.3e-09 37.6 0.0 1.9e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|116754182|ref|YP_843300.1| - 2.4e-08 33.4 0.1 4e-08 32.6 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.14 gi|116754182|ref|YP_843300.1| - 0.012 14.1 0.0 0.018 13.4 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain GDC-P PF02347.11 gi|116754182|ref|YP_843300.1| - 0.17 10.5 0.1 0.22 10.1 0.0 1.1 1 0 0 1 1 1 0 Glycine cleavage system P-protein Thg1 PF04446.7 gi|116754185|ref|YP_843303.1| - 9.4e-26 90.0 0.0 1.5e-25 89.3 0.0 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.1 gi|116754185|ref|YP_843303.1| - 2.6e-22 78.7 0.0 3.8e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain PRC PF05239.11 gi|116754186|ref|YP_843304.1| - 1.7e-14 53.3 0.8 1.9e-14 53.2 0.5 1.0 1 0 0 1 1 1 1 PRC-barrel domain PQQ_2 PF13360.1 gi|116754187|ref|YP_843305.1| - 1e-69 234.6 0.8 3.1e-20 72.6 0.0 6.2 2 2 2 5 5 5 5 PQQ-like domain PQQ_3 PF13570.1 gi|116754187|ref|YP_843305.1| - 1.5e-65 215.7 40.1 1.3e-05 25.3 0.6 16.0 16 0 0 16 16 16 14 PQQ-like domain PQQ PF01011.16 gi|116754187|ref|YP_843305.1| - 5.7e-39 129.7 25.0 8.2e-05 21.9 0.0 14.0 16 0 0 16 16 16 11 PQQ enzyme repeat CobN-Mg_chel PF02514.11 gi|116754188|ref|YP_843306.1| - 0 1284.0 0.0 0 1283.8 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase PQQ_2 PF13360.1 gi|116754188|ref|YP_843306.1| - 8.4e-70 234.9 17.3 2.3e-26 92.7 1.1 3.3 1 1 3 4 4 4 4 PQQ-like domain PQQ_3 PF13570.1 gi|116754188|ref|YP_843306.1| - 9e-54 178.3 22.2 7e-08 32.4 0.0 8.9 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.16 gi|116754188|ref|YP_843306.1| - 1e-27 94.2 11.5 5.9e-06 25.5 0.0 8.8 9 0 0 9 9 9 5 PQQ enzyme repeat DUF4430 PF14478.1 gi|116754188|ref|YP_843306.1| - 0.0075 16.3 1.3 0.51 10.4 0.0 3.9 4 0 0 4 4 4 1 Domain of unknown function (DUF4430) DUF4242 PF14026.1 gi|116754188|ref|YP_843306.1| - 0.21 11.7 0.0 0.43 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4242) AsnC_trans_reg PF01037.16 gi|116754189|ref|YP_843307.1| - 1.4e-15 56.7 0.4 2.4e-15 55.9 0.0 1.6 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|116754189|ref|YP_843307.1| - 6.2e-10 38.3 0.4 1.3e-09 37.2 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|116754189|ref|YP_843307.1| - 8.5e-07 28.4 1.1 2.6e-06 26.8 0.5 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|116754189|ref|YP_843307.1| - 1.2e-05 24.9 0.1 2.3e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|116754189|ref|YP_843307.1| - 3.3e-05 24.1 0.1 0.0021 18.3 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|116754189|ref|YP_843307.1| - 0.00019 21.1 0.0 0.00045 19.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|116754189|ref|YP_843307.1| - 0.0008 19.0 0.1 0.0015 18.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|116754189|ref|YP_843307.1| - 0.0023 17.5 0.3 0.0047 16.5 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|116754189|ref|YP_843307.1| - 0.017 15.1 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|116754189|ref|YP_843307.1| - 0.021 14.5 0.1 0.048 13.3 0.1 1.5 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|116754189|ref|YP_843307.1| - 0.034 13.8 0.2 0.084 12.5 0.1 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|116754189|ref|YP_843307.1| - 0.039 13.4 0.3 0.058 12.8 0.2 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Sigma70_r3 PF04539.11 gi|116754189|ref|YP_843307.1| - 0.058 13.2 0.4 0.13 12.1 0.3 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 Phage_rep_org_N PF09681.5 gi|116754189|ref|YP_843307.1| - 0.072 12.6 0.0 0.17 11.4 0.0 1.6 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Crp PF00325.15 gi|116754189|ref|YP_843307.1| - 0.085 12.3 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_DeoR PF08220.7 gi|116754189|ref|YP_843307.1| - 0.093 12.2 0.1 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_38 PF13936.1 gi|116754189|ref|YP_843307.1| - 0.12 11.9 0.2 0.3 10.6 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Myb_DNA-bind_6 PF13921.1 gi|116754189|ref|YP_843307.1| - 0.12 12.4 0.0 0.39 10.8 0.0 1.9 2 1 0 2 2 2 0 Myb-like DNA-binding domain Stk19 PF10494.4 gi|116754189|ref|YP_843307.1| - 0.15 11.4 0.1 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 Aminotran_1_2 PF00155.16 gi|116754190|ref|YP_843308.1| - 3.8e-70 236.6 0.0 4.3e-70 236.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|116754190|ref|YP_843308.1| - 7e-10 38.4 0.1 1.2e-09 37.6 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|116754190|ref|YP_843308.1| - 6.5e-06 25.1 0.0 1.3e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|116754190|ref|YP_843308.1| - 0.00015 20.2 0.0 0.00042 18.7 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|116754190|ref|YP_843308.1| - 0.00038 19.7 0.0 0.00057 19.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Fork_head_N PF08430.7 gi|116754190|ref|YP_843308.1| - 0.016 15.5 0.3 0.028 14.8 0.2 1.3 1 0 0 1 1 1 0 Forkhead N-terminal region CDP-OH_P_transf PF01066.16 gi|116754191|ref|YP_843309.1| - 4.6e-12 46.1 11.2 1.3e-11 44.6 7.7 1.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase LIM PF00412.17 gi|116754192|ref|YP_843310.1| - 5.1e-06 26.4 2.2 7.1e-06 26.0 0.9 1.7 2 0 0 2 2 2 1 LIM domain HTH_20 PF12840.2 gi|116754192|ref|YP_843310.1| - 0.006 16.3 0.1 0.0095 15.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|116754192|ref|YP_843310.1| - 0.012 15.0 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF581 PF04570.9 gi|116754192|ref|YP_843310.1| - 0.041 13.1 3.2 0.11 11.7 2.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF581) DUF4428 PF14471.1 gi|116754192|ref|YP_843310.1| - 0.062 13.0 0.2 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) TrmB PF01978.14 gi|116754192|ref|YP_843310.1| - 0.12 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DZR PF12773.2 gi|116754192|ref|YP_843310.1| - 0.14 12.0 0.5 0.3 10.9 0.4 1.6 1 0 0 1 1 1 0 Double zinc ribbon DUF1272 PF06906.6 gi|116754192|ref|YP_843310.1| - 0.2 11.5 1.1 0.43 10.4 0.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) CxxCxxCC PF03692.10 gi|116754193|ref|YP_843311.1| - 4.1e-14 52.7 1.6 5.5e-14 52.3 1.1 1.1 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Hydrolase_3 PF08282.7 gi|116754194|ref|YP_843312.1| - 7.4e-30 104.3 0.0 6.1e-19 68.5 0.0 2.0 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|116754194|ref|YP_843312.1| - 1.8e-07 31.5 0.4 2.6e-05 24.4 0.0 3.0 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|116754194|ref|YP_843312.1| - 1e-06 29.3 0.1 0.022 15.1 0.0 3.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|116754194|ref|YP_843312.1| - 1.6e-05 25.1 0.1 0.014 15.6 0.0 3.1 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|116754194|ref|YP_843312.1| - 0.0007 18.9 0.0 0.0047 16.2 0.0 2.2 3 0 0 3 3 3 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase_like PF13242.1 gi|116754194|ref|YP_843312.1| - 0.069 12.8 0.0 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|116754194|ref|YP_843312.1| - 0.15 11.9 0.0 0.82 9.5 0.0 2.2 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Sfi1 PF08457.5 gi|116754194|ref|YP_843312.1| - 0.2 10.0 0.0 0.27 9.6 0.0 1.0 1 0 0 1 1 1 0 Sfi1 spindle body protein Rad51 PF08423.6 gi|116754195|ref|YP_843313.1| - 1.2e-87 293.1 0.0 1.4e-87 292.8 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|116754195|ref|YP_843313.1| - 5.3e-15 55.3 2.7 1.3e-14 54.1 1.9 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.16 gi|116754195|ref|YP_843313.1| - 1.4e-12 47.3 0.0 2.3e-05 23.6 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|116754195|ref|YP_843313.1| - 2.4e-10 40.1 0.1 4e-10 39.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|116754195|ref|YP_843313.1| - 2.9e-07 29.8 0.0 4.5e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH PF00633.18 gi|116754195|ref|YP_843313.1| - 4.1e-07 29.3 4.4 0.0005 19.6 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|116754195|ref|YP_843313.1| - 1.9e-05 24.4 0.6 4.7e-05 23.1 0.4 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|116754195|ref|YP_843313.1| - 9.5e-05 22.2 0.0 0.0002 21.2 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|116754195|ref|YP_843313.1| - 0.00041 19.8 0.0 0.0016 17.9 0.0 2.1 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda ATP-synt_ab PF00006.20 gi|116754195|ref|YP_843313.1| - 0.00044 19.8 0.0 0.00072 19.1 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|116754195|ref|YP_843313.1| - 0.0025 17.9 0.0 0.0068 16.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CobU PF02283.11 gi|116754195|ref|YP_843313.1| - 0.003 16.9 0.0 0.061 12.7 0.0 2.3 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase IMS_HHH PF11798.3 gi|116754195|ref|YP_843313.1| - 0.006 16.5 0.0 0.021 14.8 0.0 2.0 1 0 0 1 1 1 1 IMS family HHH motif AAA_22 PF13401.1 gi|116754195|ref|YP_843313.1| - 0.0099 16.0 0.1 0.025 14.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|116754195|ref|YP_843313.1| - 0.018 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF4332 PF14229.1 gi|116754195|ref|YP_843313.1| - 0.053 13.5 0.1 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) DUF1009 PF06230.6 gi|116754195|ref|YP_843313.1| - 0.069 12.5 0.3 0.14 11.4 0.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1009) AAA_24 PF13479.1 gi|116754195|ref|YP_843313.1| - 0.082 12.4 0.0 0.17 11.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|116754195|ref|YP_843313.1| - 0.13 12.5 0.2 1.1 9.5 0.1 2.5 1 1 0 1 1 1 0 AAA domain tRNA_anti-codon PF01336.20 gi|116754196|ref|YP_843314.1| - 3.9e-25 87.4 7.8 1.4e-08 34.4 0.9 3.3 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|116754196|ref|YP_843314.1| - 0.0066 16.1 0.1 6.8 6.3 0.0 3.3 3 0 0 3 3 3 2 Replication factor-A C terminal domain ABC_tran PF00005.22 gi|116754197|ref|YP_843315.1| - 8.4e-57 191.2 0.0 3.3e-27 95.4 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|116754197|ref|YP_843315.1| - 3.2e-18 66.7 0.0 1.1e-05 25.5 0.0 3.4 3 1 0 3 3 3 3 AAA domain DUF258 PF03193.11 gi|116754197|ref|YP_843315.1| - 2e-08 33.5 0.0 0.0027 16.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|116754197|ref|YP_843315.1| - 7.7e-08 31.7 0.6 0.0012 18.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|116754197|ref|YP_843315.1| - 2.1e-07 30.3 0.4 0.17 10.8 0.0 4.0 4 0 0 4 4 4 1 AAA ATPase domain AAA_25 PF13481.1 gi|116754197|ref|YP_843315.1| - 2.5e-07 30.2 1.7 0.13 11.6 0.5 4.7 4 1 0 4 4 4 2 AAA domain SMC_N PF02463.14 gi|116754197|ref|YP_843315.1| - 9.4e-07 28.2 2.2 0.0069 15.6 0.0 4.0 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|116754197|ref|YP_843315.1| - 7.9e-06 26.6 4.0 0.072 13.9 0.2 3.5 2 2 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|116754197|ref|YP_843315.1| - 9.7e-06 25.2 2.7 0.55 9.6 0.5 4.5 3 1 1 5 5 5 2 AAA-like domain AAA_16 PF13191.1 gi|116754197|ref|YP_843315.1| - 1.1e-05 25.4 1.1 0.083 12.8 0.0 2.9 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|116754197|ref|YP_843315.1| - 1.7e-05 24.9 3.9 0.58 10.2 0.2 3.9 4 1 0 4 4 4 1 AAA domain AAA_23 PF13476.1 gi|116754197|ref|YP_843315.1| - 3.1e-05 24.3 1.3 0.03 14.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|116754197|ref|YP_843315.1| - 0.00011 22.0 3.3 0.0078 16.1 0.1 3.9 3 2 0 3 3 2 1 Putative exonuclease SbcCD, C subunit ATP-synt_ab PF00006.20 gi|116754197|ref|YP_843315.1| - 0.00021 20.8 0.0 0.091 12.2 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.9 gi|116754197|ref|YP_843315.1| - 0.00047 19.8 0.4 0.71 9.5 0.1 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|116754197|ref|YP_843315.1| - 0.00057 19.8 1.8 1.1 9.1 0.5 2.9 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|116754197|ref|YP_843315.1| - 0.00058 19.5 0.3 2.7 7.5 0.0 3.2 2 1 0 2 2 2 2 AAA domain DUF87 PF01935.12 gi|116754197|ref|YP_843315.1| - 0.0016 18.3 2.2 0.48 10.1 0.1 2.5 2 0 0 2 2 2 2 Domain of unknown function DUF87 Zeta_toxin PF06414.7 gi|116754197|ref|YP_843315.1| - 0.0025 16.9 0.1 0.81 8.7 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin Miro PF08477.8 gi|116754197|ref|YP_843315.1| - 0.0049 17.3 0.0 1.4 9.4 0.0 2.5 2 0 0 2 2 2 1 Miro-like protein PduV-EutP PF10662.4 gi|116754197|ref|YP_843315.1| - 0.0061 16.0 0.1 0.61 9.5 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|116754197|ref|YP_843315.1| - 0.0066 16.4 0.0 2.9 7.8 0.0 2.9 3 0 0 3 3 2 1 50S ribosome-binding GTPase PRK PF00485.13 gi|116754197|ref|YP_843315.1| - 0.008 15.7 0.1 2.7 7.4 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.1 gi|116754197|ref|YP_843315.1| - 0.0084 16.4 7.1 1.3 9.3 0.0 4.5 4 1 1 5 5 4 1 AAA domain IstB_IS21 PF01695.12 gi|116754197|ref|YP_843315.1| - 0.0098 15.3 0.8 6.2 6.1 0.0 3.5 4 1 0 4 4 3 0 IstB-like ATP binding protein cobW PF02492.14 gi|116754197|ref|YP_843315.1| - 0.014 14.8 0.2 0.41 10.0 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|116754197|ref|YP_843315.1| - 0.014 15.1 5.2 0.78 9.3 0.3 3.3 3 0 0 3 3 3 0 NACHT domain AAA_33 PF13671.1 gi|116754197|ref|YP_843315.1| - 0.027 14.3 0.0 3.9 7.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|116754197|ref|YP_843315.1| - 0.045 12.6 1.3 2.2 7.0 0.2 2.3 2 0 0 2 2 2 0 NB-ARC domain ABC_ATPase PF09818.4 gi|116754197|ref|YP_843315.1| - 0.05 12.1 2.2 1.1 7.7 0.0 3.2 4 0 0 4 4 4 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|116754197|ref|YP_843315.1| - 0.051 13.2 0.1 2 8.0 0.0 2.3 2 0 0 2 2 2 0 Archaeal ATPase FtsK_SpoIIIE PF01580.13 gi|116754197|ref|YP_843315.1| - 0.066 12.6 2.9 2.7 7.3 0.0 2.9 3 0 0 3 3 3 0 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|116754197|ref|YP_843315.1| - 0.097 12.8 0.1 15 5.7 0.0 2.4 2 0 0 2 2 2 0 RNA helicase T2SE PF00437.15 gi|116754197|ref|YP_843315.1| - 0.12 11.3 2.6 2.6 6.8 0.0 2.7 2 1 1 3 3 3 0 Type II/IV secretion system protein AAA_24 PF13479.1 gi|116754197|ref|YP_843315.1| - 0.13 11.8 2.6 2.7 7.5 0.1 2.8 3 0 0 3 3 3 0 AAA domain AAA_14 PF13173.1 gi|116754197|ref|YP_843315.1| - 0.14 12.0 0.3 9.9 6.0 0.0 3.4 4 0 0 4 4 4 0 AAA domain DLIC PF05783.6 gi|116754197|ref|YP_843315.1| - 0.19 10.3 0.0 14 4.2 0.0 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) KaiC PF06745.8 gi|116754197|ref|YP_843315.1| - 4.5 6.3 7.4 5.2 6.1 0.0 3.8 5 1 1 6 6 6 0 KaiC tRNA-synt_1g PF09334.6 gi|116754198|ref|YP_843316.1| - 1.3e-144 481.6 0.0 1.6e-144 481.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|116754198|ref|YP_843316.1| - 5.4e-27 93.4 0.4 9.3e-27 92.7 0.3 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|116754198|ref|YP_843316.1| - 3.2e-18 65.0 0.1 8.9e-08 30.5 0.0 3.8 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|116754198|ref|YP_843316.1| - 8.3e-13 48.1 0.0 1.2e-07 31.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|116754198|ref|YP_843316.1| - 4.1e-09 36.3 0.0 6.8e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|116754198|ref|YP_843316.1| - 8.2e-05 21.4 0.0 0.016 13.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|116754198|ref|YP_843316.1| - 0.001 17.9 0.0 0.22 10.2 0.0 2.9 2 1 1 3 3 3 1 tRNA synthetases class I (R) DZR PF12773.2 gi|116754198|ref|YP_843316.1| - 0.035 13.9 6.8 0.17 11.7 4.9 2.0 1 1 1 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|116754198|ref|YP_843316.1| - 0.08 12.1 9.5 0.65 9.2 2.1 2.8 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|116754198|ref|YP_843316.1| - 0.35 10.4 8.3 2 7.9 1.5 2.7 2 0 0 2 2 2 0 zinc-ribbon domain TrmB PF01978.14 gi|116754199|ref|YP_843317.1| - 2.4e-06 27.1 0.1 5.6e-06 25.9 0.0 1.6 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|116754199|ref|YP_843317.1| - 0.00052 20.2 0.2 0.0014 18.9 0.0 1.8 1 1 1 2 2 2 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|116754199|ref|YP_843317.1| - 0.00086 18.7 0.8 0.0011 18.4 0.6 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|116754199|ref|YP_843317.1| - 0.0014 18.2 0.1 0.003 17.2 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF387 PF04079.11 gi|116754199|ref|YP_843317.1| - 0.0057 16.0 0.1 0.012 14.9 0.0 1.6 1 1 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_34 PF13601.1 gi|116754199|ref|YP_843317.1| - 0.0079 16.2 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain RE_HindIII PF09518.5 gi|116754199|ref|YP_843317.1| - 0.032 13.1 0.5 0.04 12.8 0.3 1.1 1 0 0 1 1 1 0 HindIII restriction endonuclease DUF2250 PF10007.4 gi|116754199|ref|YP_843317.1| - 0.043 13.7 0.1 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|116754199|ref|YP_843317.1| - 0.11 12.1 0.0 0.47 10.1 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Tubulin PF00091.20 gi|116754200|ref|YP_843318.1| - 5.1e-38 131.0 0.3 1.4e-37 129.6 0.2 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|116754200|ref|YP_843318.1| - 4.6e-35 119.5 0.7 1.2e-34 118.2 0.5 1.7 1 0 0 1 1 1 1 FtsZ family, C-terminal domain MoCF_biosynth PF00994.19 gi|116754200|ref|YP_843318.1| - 0.07 12.5 0.2 0.16 11.3 0.1 1.6 1 0 0 1 1 1 0 Probable molybdopterin binding domain ThiF PF00899.16 gi|116754200|ref|YP_843318.1| - 0.094 12.5 0.4 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 ThiF family Tubulin_2 PF13809.1 gi|116754200|ref|YP_843318.1| - 1.6 7.5 5.9 0.095 11.6 0.1 1.7 2 0 0 2 2 2 0 Tubulin like HTH_24 PF13412.1 gi|116754201|ref|YP_843319.1| - 1.1e-05 24.7 0.0 4.1e-05 22.8 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|116754201|ref|YP_843319.1| - 0.00032 20.3 0.0 0.00048 19.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|116754201|ref|YP_843319.1| - 0.0019 18.2 0.0 0.0028 17.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.15 gi|116754201|ref|YP_843319.1| - 0.004 16.7 0.2 0.0066 16.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|116754201|ref|YP_843319.1| - 0.0057 16.5 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.2 gi|116754201|ref|YP_843319.1| - 0.0065 16.2 0.0 0.0092 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|116754201|ref|YP_843319.1| - 0.01 15.5 0.1 0.022 14.4 0.0 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|116754201|ref|YP_843319.1| - 0.042 14.1 0.0 0.075 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|116754201|ref|YP_843319.1| - 0.046 13.2 0.1 0.13 11.8 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) MerR PF00376.18 gi|116754201|ref|YP_843319.1| - 0.051 13.1 0.0 11 5.6 0.0 2.2 2 0 0 2 2 2 0 MerR family regulatory protein RPA_C PF08784.6 gi|116754201|ref|YP_843319.1| - 0.08 13.3 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal GntR PF00392.16 gi|116754201|ref|YP_843319.1| - 0.1 12.0 0.1 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|116754201|ref|YP_843319.1| - 0.11 12.2 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 MarR family ThiI PF02568.9 gi|116754202|ref|YP_843320.1| - 1e-54 185.0 0.0 1.3e-54 184.6 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|116754202|ref|YP_843320.1| - 1.9e-17 63.4 0.0 3.2e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|116754202|ref|YP_843320.1| - 8.4e-05 21.9 0.0 0.0057 15.9 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|116754202|ref|YP_843320.1| - 0.0088 14.6 0.0 0.016 13.8 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase VIT_2 PF13757.1 gi|116754202|ref|YP_843320.1| - 0.085 12.3 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Vault protein inter-alpha-trypsin domain DUF1232 PF06803.7 gi|116754203|ref|YP_843321.1| - 5.7e-12 44.8 0.0 8.6e-12 44.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) Radical_SAM PF04055.16 gi|116754204|ref|YP_843322.1| - 3.2e-18 66.4 0.1 5.6e-18 65.6 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|116754204|ref|YP_843322.1| - 1e-06 28.9 0.7 4.1e-06 27.0 0.1 2.3 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|116754204|ref|YP_843322.1| - 0.023 14.8 0.1 0.077 13.1 0.0 1.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain Bombinin PF05298.6 gi|116754204|ref|YP_843322.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Bombinin SecD_SecF PF02355.11 gi|116754205|ref|YP_843323.1| - 2.4e-15 56.2 7.6 4.4e-15 55.3 5.3 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|116754205|ref|YP_843323.1| - 0.00014 20.8 0.1 0.00042 19.3 0.0 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif Sterol-sensing PF12349.3 gi|116754205|ref|YP_843323.1| - 0.049 13.0 2.6 0.11 11.9 1.8 1.6 1 0 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.14 gi|116754205|ref|YP_843323.1| - 0.89 6.8 5.3 1.3 6.3 3.7 1.2 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family SecD_SecF PF02355.11 gi|116754206|ref|YP_843324.1| - 2.5e-33 114.8 13.4 2.5e-33 114.8 9.3 1.5 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|116754206|ref|YP_843324.1| - 1.2e-06 27.4 0.0 2.7e-06 26.2 0.0 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|116754206|ref|YP_843324.1| - 0.0075 14.2 14.2 0.0096 13.8 9.8 1.1 1 0 0 1 1 1 1 Patched family MMPL PF03176.10 gi|116754206|ref|YP_843324.1| - 4.2 5.9 20.6 0.23 10.1 10.7 1.4 2 0 0 2 2 2 0 MMPL family Nitroreductase PF00881.19 gi|116754207|ref|YP_843325.1| - 2.4e-37 128.2 0.1 2.9e-37 128.0 0.1 1.1 1 0 0 1 1 1 1 Nitroreductase family Radical_SAM PF04055.16 gi|116754208|ref|YP_843326.1| - 2.1e-18 67.0 0.0 2e-17 63.8 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|116754208|ref|YP_843326.1| - 6.7e-09 35.6 0.4 2.2e-08 34.0 0.3 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|116754208|ref|YP_843326.1| - 1.7e-05 24.9 0.1 5.4e-05 23.2 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PCP_red PF08369.5 gi|116754208|ref|YP_843326.1| - 0.012 15.4 1.4 0.056 13.3 0.1 2.5 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Fer4_7 PF12838.2 gi|116754209|ref|YP_843327.1| - 2.4e-19 69.4 70.9 3.8e-08 33.5 6.9 3.3 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|116754209|ref|YP_843327.1| - 1.5e-17 62.6 36.4 4.1e-08 32.7 1.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.22 gi|116754209|ref|YP_843327.1| - 3e-17 61.4 35.2 3.3e-06 26.4 2.2 4.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|116754209|ref|YP_843327.1| - 9.7e-12 44.9 47.5 2.9e-06 27.4 6.1 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754209|ref|YP_843327.1| - 1e-11 44.0 36.9 0.00051 19.8 3.0 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|116754209|ref|YP_843327.1| - 2.5e-11 43.1 27.9 1.3e-06 28.0 7.2 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754209|ref|YP_843327.1| - 2.9e-11 43.9 20.4 0.0015 19.2 0.3 4.2 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_11 PF13247.1 gi|116754209|ref|YP_843327.1| - 5.2e-11 42.3 11.9 5.2e-11 42.3 8.3 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|116754209|ref|YP_843327.1| - 4.3e-08 33.1 46.7 0.011 16.1 3.7 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|116754209|ref|YP_843327.1| - 4.3e-08 32.8 39.6 0.0049 17.0 3.1 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116754209|ref|YP_843327.1| - 6.5e-06 25.9 28.1 0.13 12.1 7.2 3.4 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116754209|ref|YP_843327.1| - 1.3e-05 25.0 28.0 0.037 14.0 6.1 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754209|ref|YP_843327.1| - 0.00011 22.4 27.5 0.11 12.8 1.5 3.8 1 1 5 6 6 6 6 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116754209|ref|YP_843327.1| - 0.00038 20.9 2.3 0.00038 20.9 1.6 4.0 2 2 1 3 3 3 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|116754209|ref|YP_843327.1| - 0.16 12.3 39.3 0.42 11.0 2.4 4.4 1 1 3 4 4 4 0 4Fe-4S dicluster domain AFOR_C PF01314.13 gi|116754210|ref|YP_843328.1| - 4.8e-73 246.0 0.0 6.3e-73 245.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|116754210|ref|YP_843328.1| - 2.8e-63 212.9 0.0 4.2e-63 212.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain NTP_transferase PF00483.18 gi|116754211|ref|YP_843329.1| - 6.5e-33 114.0 0.0 8e-33 113.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|116754211|ref|YP_843329.1| - 1.3e-14 52.9 25.6 2.4e-08 33.1 1.2 4.5 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|116754211|ref|YP_843329.1| - 1.3e-13 51.3 0.1 1.9e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|116754211|ref|YP_843329.1| - 3e-05 23.4 11.2 0.00017 21.0 1.0 4.0 3 1 2 5 5 5 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|116754211|ref|YP_843329.1| - 0.015 14.8 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HTH_45 PF14947.1 gi|116754212|ref|YP_843330.1| - 1e-26 92.5 1.0 1.2e-26 92.3 0.7 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|116754212|ref|YP_843330.1| - 0.00042 19.9 0.0 0.00048 19.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) MotA_activ PF09114.5 gi|116754212|ref|YP_843330.1| - 0.028 14.1 0.0 0.033 13.9 0.0 1.1 1 0 0 1 1 1 0 Transcription factor MotA, activation domain Pyr_redox_2 PF07992.9 gi|116754213|ref|YP_843331.1| - 7.3e-28 97.8 0.0 1.4e-27 96.9 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|116754213|ref|YP_843331.1| - 7.2e-23 80.7 0.3 1.3e-22 79.9 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|116754213|ref|YP_843331.1| - 4.5e-16 59.0 1.2 1.4e-15 57.4 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|116754213|ref|YP_843331.1| - 2.5e-05 23.2 3.5 0.003 16.4 0.3 2.9 2 1 1 3 3 3 2 FAD binding domain DAO PF01266.19 gi|116754213|ref|YP_843331.1| - 0.0026 16.7 6.9 0.059 12.2 0.2 3.5 3 1 1 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|116754213|ref|YP_843331.1| - 0.0033 15.9 0.2 0.0069 14.8 0.2 1.5 1 0 0 1 1 1 1 HI0933-like protein 3HCDH_N PF02737.13 gi|116754213|ref|YP_843331.1| - 0.041 13.5 0.6 0.25 10.9 0.0 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YHS PF04945.8 gi|116754214|ref|YP_843332.1| - 6.7e-20 70.6 1.5 7.1e-20 70.5 1.1 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|116754214|ref|YP_843332.1| - 0.0022 18.0 0.6 0.0026 17.8 0.3 1.3 1 1 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|116754214|ref|YP_843332.1| - 0.017 14.7 0.3 0.021 14.4 0.2 1.2 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif ATPase-cat_bd PF12156.3 gi|116754214|ref|YP_843332.1| - 0.018 15.5 0.1 0.02 15.4 0.1 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase E1-E2_ATPase PF00122.15 gi|116754215|ref|YP_843333.1| - 1.2e-57 194.5 0.2 3.6e-57 193.0 0.0 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|116754215|ref|YP_843333.1| - 1.1e-53 182.8 2.6 1.8e-53 182.1 1.8 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|116754215|ref|YP_843333.1| - 1.8e-32 111.2 2.4 3.6e-16 59.0 0.0 3.0 3 0 0 3 3 3 2 Heavy-metal-associated domain HAD PF12710.2 gi|116754215|ref|YP_843333.1| - 2.3e-16 60.5 0.0 6e-16 59.1 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|116754215|ref|YP_843333.1| - 3.1e-07 30.2 0.3 0.013 15.1 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase MafB19-deam PF14437.1 gi|116754215|ref|YP_843333.1| - 0.00021 20.9 0.5 0.047 13.3 0.0 2.7 2 0 0 2 2 2 2 MafB19-like deaminase Tox-PL-2 PF15643.1 gi|116754215|ref|YP_843333.1| - 0.017 15.0 0.1 0.11 12.4 0.0 2.3 2 1 1 3 3 3 0 Papain fold toxin 2 SHOCT PF09851.4 gi|116754216|ref|YP_843334.1| - 6.2e-09 35.0 2.7 9e-09 34.5 1.8 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF2029 PF09594.5 gi|116754216|ref|YP_843334.1| - 0.022 14.2 4.2 0.028 13.9 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2029) Virul_fac_BrkB PF03631.10 gi|116754216|ref|YP_843334.1| - 0.047 13.0 4.8 0.056 12.8 3.3 1.0 1 0 0 1 1 1 0 Virulence factor BrkB DUF3366 PF11846.3 gi|116754216|ref|YP_843334.1| - 0.11 12.3 0.9 0.13 12.1 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3366) FeThRed_B PF02943.10 gi|116754217|ref|YP_843335.1| - 9.4e-23 80.0 0.1 9.4e-23 80.0 0.1 1.8 2 0 0 2 2 2 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.10 gi|116754217|ref|YP_843335.1| - 0.00064 19.1 1.1 0.0016 17.8 0.7 1.7 1 0 0 1 1 1 1 RecR protein Rubredoxin PF00301.15 gi|116754217|ref|YP_843335.1| - 0.064 13.1 6.4 4.7 7.1 4.4 2.6 1 1 0 1 1 1 0 Rubredoxin HypA PF01155.14 gi|116754217|ref|YP_843335.1| - 0.082 12.5 0.7 0.17 11.6 0.5 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-like PF04071.7 gi|116754217|ref|YP_843335.1| - 0.13 11.9 2.0 0.75 9.5 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich small domain Glutaredoxin PF00462.19 gi|116754218|ref|YP_843336.1| - 5.4e-13 48.7 0.0 7.3e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|116754218|ref|YP_843336.1| - 7.7e-08 32.4 0.0 1e-07 32.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|116754218|ref|YP_843336.1| - 2.3e-05 24.3 0.0 2.7e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|116754218|ref|YP_843336.1| - 0.0017 18.4 0.0 0.25 11.4 0.0 2.0 1 1 1 2 2 2 2 ArsC family GST_N PF02798.15 gi|116754218|ref|YP_843336.1| - 0.0067 16.5 0.0 0.0088 16.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|116754218|ref|YP_843336.1| - 0.04 14.1 0.0 0.043 14.0 0.0 1.1 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) PI3K_p85B PF02192.11 gi|116754218|ref|YP_843336.1| - 0.14 11.6 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 PI3-kinase family, p85-binding domain AAL_decarboxy PF03306.8 gi|116754219|ref|YP_843337.1| - 6.3e-86 286.9 0.0 7.3e-86 286.7 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase ZYG-11_interact PF05884.7 gi|116754220|ref|YP_843338.1| - 0.055 12.5 0.2 0.15 11.0 0.0 1.7 2 0 0 2 2 2 0 Interactor of ZYG-11 HhH-GPD PF00730.20 gi|116754221|ref|YP_843339.1| - 5.2e-16 58.8 0.0 8.1e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|116754221|ref|YP_843339.1| - 1.2e-05 25.4 0.2 0.0061 16.7 0.1 2.6 1 1 1 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.18 gi|116754221|ref|YP_843339.1| - 5.8e-05 22.5 0.2 0.00091 18.7 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|116754221|ref|YP_843339.1| - 0.022 14.6 0.0 4.8 7.1 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|116754221|ref|YP_843339.1| - 0.027 14.6 6.6 0.044 13.9 4.6 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Transposase_20 PF02371.11 gi|116754221|ref|YP_843339.1| - 0.028 14.4 0.0 0.052 13.6 0.0 1.5 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family DUF2400 PF09674.5 gi|116754221|ref|YP_843339.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) Fer4_18 PF13746.1 gi|116754222|ref|YP_843340.1| - 3.3e-08 33.8 9.6 2.7e-07 30.8 4.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754222|ref|YP_843340.1| - 1.2e-05 25.4 10.1 0.0037 17.5 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116754222|ref|YP_843340.1| - 3e-05 23.9 14.3 0.00011 22.0 9.4 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754222|ref|YP_843340.1| - 0.00014 21.5 11.5 0.00067 19.4 8.0 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|116754222|ref|YP_843340.1| - 0.00031 20.5 8.9 0.06 13.2 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116754222|ref|YP_843340.1| - 0.0013 19.0 12.3 0.052 13.9 9.1 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754222|ref|YP_843340.1| - 0.0017 18.5 15.2 0.044 14.0 10.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754222|ref|YP_843340.1| - 0.026 14.4 1.3 0.026 14.4 0.9 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4 PF00037.22 gi|116754222|ref|YP_843340.1| - 0.86 9.3 24.5 0.057 13.0 2.8 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Molybdopterin PF00384.17 gi|116754223|ref|YP_843341.1| - 5.5e-88 295.5 0.0 6.6e-88 295.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|116754223|ref|YP_843341.1| - 5e-28 97.1 0.0 9e-28 96.2 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|116754223|ref|YP_843341.1| - 1.1e-12 47.5 0.8 2.2e-12 46.6 0.5 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DHODB_Fe-S_bind PF10418.4 gi|116754224|ref|YP_843342.1| - 1.2e-10 40.6 3.2 1.2e-10 40.6 2.2 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.1 gi|116754224|ref|YP_843342.1| - 0.24 11.2 0.9 0.43 10.4 0.6 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Molybdopterin PF00384.17 gi|116754225|ref|YP_843343.1| - 3e-90 303.0 0.0 3.9e-90 302.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|116754225|ref|YP_843343.1| - 1.3e-32 111.8 0.1 4.3e-32 110.1 0.0 2.0 2 0 0 2 2 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.1 gi|116754225|ref|YP_843343.1| - 1.6e-17 63.0 1.0 2.5e-17 62.4 0.0 1.9 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Molybdop_Fe4S4 PF04879.11 gi|116754225|ref|YP_843343.1| - 1.1e-14 53.9 0.8 1.1e-14 53.9 0.5 3.0 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain NADH-G_4Fe-4S_3 PF10588.4 gi|116754225|ref|YP_843343.1| - 4.2e-09 35.4 9.5 5.2e-05 22.3 0.2 3.2 3 0 0 3 3 3 2 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4 PF00037.22 gi|116754225|ref|YP_843343.1| - 7.4e-09 34.8 19.0 3.5e-07 29.5 1.1 3.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116754225|ref|YP_843343.1| - 3.1e-07 29.9 17.1 0.00048 19.8 0.8 3.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116754225|ref|YP_843343.1| - 1.1e-05 25.7 27.5 6.3e-05 23.2 8.0 4.1 2 1 2 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116754225|ref|YP_843343.1| - 3.2e-05 23.8 5.5 3.2e-05 23.8 3.8 3.3 3 1 1 4 4 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|116754225|ref|YP_843343.1| - 0.00018 21.2 4.1 0.00018 21.2 2.8 3.0 4 1 0 4 4 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116754225|ref|YP_843343.1| - 0.00099 19.6 6.4 0.5 10.9 0.2 3.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|116754225|ref|YP_843343.1| - 0.0025 18.0 11.2 0.0025 18.0 7.8 3.3 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|116754225|ref|YP_843343.1| - 0.0043 17.5 6.6 0.0043 17.5 4.6 4.2 4 0 0 4 4 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|116754225|ref|YP_843343.1| - 0.0049 16.6 5.4 0.0049 16.6 3.7 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754225|ref|YP_843343.1| - 0.0077 16.0 3.1 0.0077 16.0 2.2 3.9 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|116754225|ref|YP_843343.1| - 0.013 16.2 5.3 0.013 16.2 3.7 3.8 4 0 0 4 4 2 0 4Fe-4S double cluster binding domain CDC48_N PF02359.13 gi|116754225|ref|YP_843343.1| - 0.052 13.4 0.0 0.2 11.6 0.0 1.9 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_18 PF13746.1 gi|116754225|ref|YP_843343.1| - 2.7 8.4 19.4 0.11 12.8 0.2 3.4 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|116754225|ref|YP_843343.1| - 3.4 8.1 9.9 6.2 7.2 1.1 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|116754225|ref|YP_843343.1| - 9.2 6.7 26.0 0.093 13.0 2.0 3.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Cpn60_TCP1 PF00118.19 gi|116754226|ref|YP_843344.1| - 1e-164 548.7 4.4 1.2e-164 548.5 3.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family MacB_PCD PF12704.2 gi|116754227|ref|YP_843345.1| - 1.3e-21 77.3 4.8 2.8e-20 72.9 0.0 2.4 2 0 0 2 2 2 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|116754227|ref|YP_843345.1| - 1e-20 73.6 8.4 1e-20 73.6 5.8 1.7 2 0 0 2 2 2 1 FtsX-like permease family ABC2_membrane_3 PF12698.2 gi|116754227|ref|YP_843345.1| - 0.051 12.6 4.6 0.079 11.9 3.2 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein MacB_PCD PF12704.2 gi|116754228|ref|YP_843346.1| - 2.6e-32 112.2 0.1 2.6e-32 112.2 0.1 1.4 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|116754228|ref|YP_843346.1| - 3.4e-22 78.4 14.3 3.4e-22 78.4 9.9 2.1 2 0 0 2 2 2 1 FtsX-like permease family SOR_SNZ PF01680.12 gi|116754229|ref|YP_843347.1| - 5.3e-108 359.4 9.8 5.3e-108 359.4 6.8 1.5 2 0 0 2 2 2 1 SOR/SNZ family ThiG PF05690.9 gi|116754229|ref|YP_843347.1| - 2e-08 33.6 12.1 6.6e-08 31.9 0.5 2.6 2 1 0 3 3 3 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|116754229|ref|YP_843347.1| - 6.4e-06 25.2 1.1 0.028 13.2 0.0 2.3 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|116754229|ref|YP_843347.1| - 4.3e-05 22.7 0.1 0.00015 20.9 0.0 1.8 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|116754229|ref|YP_843347.1| - 0.00017 20.5 2.4 0.016 14.1 0.0 2.6 2 2 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|116754229|ref|YP_843347.1| - 0.00019 20.6 0.1 0.00019 20.6 0.1 2.3 2 1 0 2 2 2 1 Nitronate monooxygenase DUF561 PF04481.7 gi|116754229|ref|YP_843347.1| - 0.0062 15.5 1.4 0.16 10.9 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF561) PcrB PF01884.12 gi|116754229|ref|YP_843347.1| - 0.0071 15.6 0.6 0.013 14.7 0.0 1.7 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|116754229|ref|YP_843347.1| - 0.013 14.8 0.4 0.1 11.8 0.0 2.2 2 0 0 2 2 2 0 Histidine biosynthesis protein FMN_dh PF01070.13 gi|116754229|ref|YP_843347.1| - 0.014 14.2 0.6 0.021 13.6 0.0 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase TMP-TENI PF02581.12 gi|116754229|ref|YP_843347.1| - 0.039 13.0 1.5 2 7.4 0.1 2.3 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI Trp_syntA PF00290.15 gi|116754229|ref|YP_843347.1| - 0.039 12.4 0.0 0.069 11.6 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain SNO PF01174.14 gi|116754230|ref|YP_843348.1| - 8.1e-51 172.3 0.0 9e-51 172.1 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|116754230|ref|YP_843348.1| - 1.2e-10 41.1 0.0 2.2e-10 40.3 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|116754230|ref|YP_843348.1| - 4.8e-05 22.9 0.1 0.0041 16.6 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|116754230|ref|YP_843348.1| - 0.00016 21.4 0.0 0.00022 21.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|116754230|ref|YP_843348.1| - 0.0011 18.4 0.1 0.0014 18.0 0.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|116754230|ref|YP_843348.1| - 0.05 12.8 0.1 0.072 12.3 0.1 1.2 1 0 0 1 1 1 0 Putative amidotransferase BPL_N PF09825.4 gi|116754230|ref|YP_843348.1| - 0.059 12.1 0.0 0.11 11.2 0.0 1.4 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal Peptidase_C26 PF07722.8 gi|116754230|ref|YP_843348.1| - 0.066 12.6 0.6 0.56 9.5 0.3 2.4 2 1 0 2 2 2 0 Peptidase C26 Peptidase_M23 PF01551.17 gi|116754230|ref|YP_843348.1| - 0.098 12.7 0.1 0.45 10.6 0.0 2.0 2 0 0 2 2 2 0 Peptidase family M23 DUF972 PF06156.8 gi|116754231|ref|YP_843349.1| - 0.0011 19.2 6.0 0.18 12.1 0.5 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF972) DUF4192 PF13830.1 gi|116754231|ref|YP_843349.1| - 0.032 13.8 4.7 0.035 13.7 3.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4192) Synaptobrevin PF00957.16 gi|116754231|ref|YP_843349.1| - 0.045 13.3 6.5 12 5.5 0.3 3.0 1 1 2 3 3 3 0 Synaptobrevin DUF1771 PF08590.5 gi|116754231|ref|YP_843349.1| - 0.078 13.0 2.2 0.19 11.7 0.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1771) FTCD_C PF04961.7 gi|116754231|ref|YP_843349.1| - 0.18 11.1 2.2 0.22 10.9 0.6 1.6 1 1 1 2 2 2 0 Formiminotransferase-cyclodeaminase Nup54 PF13874.1 gi|116754231|ref|YP_843349.1| - 0.26 10.9 5.5 0.4 10.3 3.8 1.3 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 GAS PF13851.1 gi|116754231|ref|YP_843349.1| - 0.29 10.2 5.8 0.4 9.8 4.0 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Spc7 PF08317.6 gi|116754231|ref|YP_843349.1| - 0.38 9.3 6.0 0.45 9.1 4.2 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein Sec34 PF04136.10 gi|116754231|ref|YP_843349.1| - 0.48 10.1 4.0 6.6 6.4 2.7 2.0 1 1 0 1 1 1 0 Sec34-like family HALZ PF02183.13 gi|116754231|ref|YP_843349.1| - 0.73 9.6 6.9 0.77 9.5 1.1 2.5 2 1 1 3 3 3 0 Homeobox associated leucine zipper APG6 PF04111.7 gi|116754231|ref|YP_843349.1| - 0.87 8.5 6.6 1.3 8.0 4.5 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Ribosomal_L29 PF00831.18 gi|116754231|ref|YP_843349.1| - 1.6 8.4 8.1 1.7 8.4 0.3 2.5 1 1 2 3 3 3 0 Ribosomal L29 protein CENP-H PF05837.7 gi|116754231|ref|YP_843349.1| - 1.7 8.8 10.6 5.9 7.1 3.3 2.0 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Metal_resist PF13801.1 gi|116754231|ref|YP_843349.1| - 2.6 8.0 9.8 0.5 10.3 1.4 2.2 1 1 1 2 2 2 0 Heavy-metal resistance DUF1682 PF07946.9 gi|116754231|ref|YP_843349.1| - 2.9 6.6 6.9 2.6 6.8 4.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1682) DegS PF05384.6 gi|116754231|ref|YP_843349.1| - 3.1 6.9 9.0 72 2.5 6.3 2.1 1 1 0 1 1 1 0 Sensor protein DegS DivIVA PF05103.8 gi|116754231|ref|YP_843349.1| - 7 6.7 7.2 24 4.9 5.0 1.8 1 1 0 1 1 1 0 DivIVA protein DUF883 PF05957.8 gi|116754231|ref|YP_843349.1| - 9.5 6.6 9.0 43 4.6 4.3 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Radical_SAM PF04055.16 gi|116754232|ref|YP_843350.1| - 3.6e-21 76.0 0.0 7e-21 75.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|116754232|ref|YP_843350.1| - 7.9e-05 22.7 0.0 7.9e-05 22.7 0.0 1.9 3 0 0 3 3 3 1 4Fe-4S single cluster domain ZZ PF00569.12 gi|116754232|ref|YP_843350.1| - 0.22 11.0 8.0 16 5.1 0.1 3.4 3 0 0 3 3 3 0 Zinc finger, ZZ type zinc_ribbon_4 PF13717.1 gi|116754232|ref|YP_843350.1| - 0.84 9.3 12.5 22 4.8 0.1 4.3 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|116754232|ref|YP_843350.1| - 2.2 7.9 12.9 23 4.6 0.1 4.3 4 0 0 4 4 4 0 zinc-ribbon domain Usp PF00582.21 gi|116754233|ref|YP_843351.1| - 1.4e-42 145.2 6.2 6.1e-23 81.5 1.0 2.0 2 0 0 2 2 2 2 Universal stress protein family BON PF04972.12 gi|116754233|ref|YP_843351.1| - 0.034 13.9 0.2 0.4 10.4 0.0 2.6 2 0 0 2 2 2 0 BON domain DUF3618 PF12277.3 gi|116754234|ref|YP_843352.1| - 0.034 14.1 0.1 0.053 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) DUF3610 PF12272.3 gi|116754234|ref|YP_843352.1| - 0.071 12.7 0.0 0.079 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3610) DUF555 PF04475.7 gi|116754235|ref|YP_843353.1| - 1.1e-47 160.1 0.1 1.3e-47 160.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.7 gi|116754235|ref|YP_843353.1| - 0.065 13.2 0.1 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Dodecin zf-ribbon_3 PF13248.1 gi|116754235|ref|YP_843353.1| - 0.089 12.0 0.1 0.14 11.4 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Rad51 PF08423.6 gi|116754236|ref|YP_843354.1| - 3.1e-32 111.5 0.2 3.5e-32 111.3 0.1 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|116754236|ref|YP_843354.1| - 1.2e-13 50.9 0.0 1.9e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|116754236|ref|YP_843354.1| - 8.9e-11 41.3 4.1 1.9e-09 37.0 2.8 2.3 1 1 0 1 1 1 1 KaiC RecA PF00154.16 gi|116754236|ref|YP_843354.1| - 3.2e-10 39.5 0.4 3.7e-10 39.3 0.3 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.7 gi|116754236|ref|YP_843354.1| - 2.7e-07 30.2 0.0 3e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) IstB_IS21 PF01695.12 gi|116754236|ref|YP_843354.1| - 4e-05 23.1 0.1 0.0001 21.7 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_24 PF13479.1 gi|116754236|ref|YP_843354.1| - 8.6e-05 22.2 0.0 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|116754236|ref|YP_843354.1| - 8.8e-05 21.9 0.0 0.00013 21.3 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|116754236|ref|YP_843354.1| - 0.0004 20.5 0.0 0.00078 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|116754236|ref|YP_843354.1| - 0.00088 17.9 0.1 0.0051 15.4 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|116754236|ref|YP_843354.1| - 0.0019 18.3 0.1 0.0035 17.5 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.12 gi|116754236|ref|YP_843354.1| - 0.003 17.4 0.1 0.01 15.6 0.0 1.6 1 1 1 2 2 2 1 Domain of unknown function DUF87 Arch_ATPase PF01637.13 gi|116754236|ref|YP_843354.1| - 0.018 14.7 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase CobU PF02283.11 gi|116754236|ref|YP_843354.1| - 0.032 13.6 0.0 0.073 12.4 0.0 1.5 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase DUF2075 PF09848.4 gi|116754236|ref|YP_843354.1| - 0.047 12.6 0.1 0.069 12.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|116754236|ref|YP_843354.1| - 0.051 13.2 0.0 0.1 12.2 0.0 1.5 1 1 0 1 1 1 0 Bacterial dnaA protein PhoH PF02562.11 gi|116754236|ref|YP_843354.1| - 0.065 12.4 0.1 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein IPT PF01745.11 gi|116754236|ref|YP_843354.1| - 0.089 11.9 0.1 5.5 6.0 0.0 2.2 2 0 0 2 2 2 0 Isopentenyl transferase ABC_tran PF00005.22 gi|116754236|ref|YP_843354.1| - 0.098 12.9 0.2 0.18 12.0 0.2 1.5 1 1 0 1 1 1 0 ABC transporter Lactamase_B_2 PF12706.2 gi|116754237|ref|YP_843355.1| - 7.5e-34 116.9 0.0 9.8e-34 116.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|116754237|ref|YP_843355.1| - 3.5e-16 59.4 0.0 1.2e-14 54.4 0.0 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|116754237|ref|YP_843355.1| - 2.1e-07 30.2 0.0 4.2e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease NAD_binding_4 PF07993.7 gi|116754237|ref|YP_843355.1| - 0.084 11.7 0.1 0.18 10.7 0.0 1.5 2 0 0 2 2 2 0 Male sterility protein DNase-RNase PF02577.9 gi|116754238|ref|YP_843356.1| - 1.1e-39 134.7 0.0 1.4e-39 134.4 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease tRNA-synt_1 PF00133.17 gi|116754239|ref|YP_843357.1| - 3e-204 679.4 0.0 4.1e-204 678.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|116754239|ref|YP_843357.1| - 2.7e-35 121.3 0.0 6.3e-35 120.1 0.0 1.6 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|116754239|ref|YP_843357.1| - 5.1e-29 101.1 0.8 1.8e-13 49.9 0.2 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|116754239|ref|YP_843357.1| - 5.2e-07 29.0 0.0 5.2e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|116754239|ref|YP_843357.1| - 3e-05 22.8 0.0 0.00018 20.3 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) E1-E2_ATPase PF00122.15 gi|116754240|ref|YP_843358.1| - 3.4e-62 209.4 0.1 3.4e-62 209.4 0.1 2.3 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|116754240|ref|YP_843358.1| - 1.9e-22 80.7 0.0 3.1e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|116754240|ref|YP_843358.1| - 5.3e-18 65.1 10.0 5.3e-18 65.1 6.9 2.0 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.21 gi|116754240|ref|YP_843358.1| - 5.2e-17 61.0 0.0 1.4e-16 59.6 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|116754240|ref|YP_843358.1| - 3e-13 50.3 0.1 5.8e-13 49.4 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|116754240|ref|YP_843358.1| - 1.1e-05 25.2 0.0 3e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|116754240|ref|YP_843358.1| - 0.00011 21.9 0.5 0.00019 21.0 0.4 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF131 PF01998.12 gi|116754241|ref|YP_843359.1| - 7.5e-19 66.8 1.0 9.4e-19 66.5 0.6 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF131 DUF131 PF01998.12 gi|116754242|ref|YP_843360.1| - 3.2e-15 55.2 19.5 1.4e-14 53.2 12.4 2.0 1 1 1 2 2 2 1 Protein of unknown function DUF131 PTS_EIIC_2 PF13303.1 gi|116754242|ref|YP_843360.1| - 0.024 13.4 8.6 0.026 13.3 6.0 1.0 1 0 0 1 1 1 0 Phosphotransferase system, EIIC DUF4337 PF14235.1 gi|116754242|ref|YP_843360.1| - 0.16 11.7 0.7 0.16 11.7 0.5 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) DUF2975 PF11188.3 gi|116754242|ref|YP_843360.1| - 0.34 10.6 9.2 0.4 10.4 6.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF973 PF06157.6 gi|116754242|ref|YP_843360.1| - 0.6 9.0 10.1 0.71 8.7 7.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) FUSC_2 PF13515.1 gi|116754242|ref|YP_843360.1| - 0.74 9.7 7.7 0.89 9.4 5.3 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein-like 7TMR-DISM_7TM PF07695.6 gi|116754242|ref|YP_843360.1| - 1.1 8.8 14.1 1.8 8.1 1.4 2.0 1 1 1 2 2 2 0 7TM diverse intracellular signalling Sterol-sensing PF12349.3 gi|116754242|ref|YP_843360.1| - 3.8 6.9 6.2 5.5 6.4 4.3 1.3 1 1 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation DUF202 PF02656.10 gi|116754242|ref|YP_843360.1| - 3.8 7.7 5.6 6 7.1 3.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Peptidase_A24 PF01478.13 gi|116754242|ref|YP_843360.1| - 4.4 7.5 8.1 5.4 7.2 5.6 1.1 1 0 0 1 1 1 0 Type IV leader peptidase family DUF3953 PF13129.1 gi|116754242|ref|YP_843360.1| - 9.3 5.9 12.5 0.25 10.9 1.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) tRNA-synt_His PF13393.1 gi|116754243|ref|YP_843361.1| - 7.2e-63 212.5 0.3 5.8e-61 206.2 0.2 2.1 1 1 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|116754243|ref|YP_843361.1| - 2.1e-24 86.0 0.0 3.4e-24 85.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|116754243|ref|YP_843361.1| - 5.5e-10 39.0 0.2 1.4e-09 37.7 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|116754243|ref|YP_843361.1| - 0.00033 19.5 0.5 0.016 14.0 0.0 2.8 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) FANCI_S1-cap PF14674.1 gi|116754243|ref|YP_843361.1| - 0.037 14.0 0.7 0.087 12.8 0.5 1.6 1 0 0 1 1 1 0 FANCI solenoid 1 cap Peptidase_M42 PF05343.9 gi|116754244|ref|YP_843362.1| - 1.1e-101 339.4 0.3 1.3e-101 339.1 0.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|116754244|ref|YP_843362.1| - 2e-15 56.7 0.1 3.1e-15 56.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|116754244|ref|YP_843362.1| - 0.0016 16.9 0.0 0.0079 14.7 0.0 1.9 2 0 0 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.12 gi|116754244|ref|YP_843362.1| - 0.089 12.5 0.0 0.33 10.6 0.0 1.9 2 0 0 2 2 2 0 Peptidase family M28 DUF98 PF01947.11 gi|116754245|ref|YP_843363.1| - 4.7e-31 107.5 0.0 8.5e-31 106.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF98) GHMP_kinases_N PF00288.21 gi|116754245|ref|YP_843363.1| - 2.3e-08 33.9 1.0 5.9e-08 32.6 0.7 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain UTRA PF07702.8 gi|116754245|ref|YP_843363.1| - 2.3e-07 30.4 0.1 6.7e-07 28.9 0.0 1.8 1 1 0 1 1 1 1 UTRA domain GHMP_kinases_C PF08544.8 gi|116754245|ref|YP_843363.1| - 1.6e-05 25.0 0.3 0.0036 17.4 0.0 2.5 2 0 0 2 2 2 2 GHMP kinases C terminal HMG-CoA_red PF00368.13 gi|116754246|ref|YP_843364.1| - 4.9e-93 311.7 6.1 6.1e-93 311.4 4.2 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF2493 PF10686.4 gi|116754246|ref|YP_843364.1| - 0.061 12.8 1.3 2.6 7.6 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2493) PDT PF00800.13 gi|116754247|ref|YP_843365.1| - 6.3e-64 214.8 0.0 9.6e-64 214.2 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|116754247|ref|YP_843365.1| - 2.9e-12 45.7 0.1 7.1e-12 44.5 0.0 1.7 2 0 0 2 2 2 1 ACT domain SBP_bac_3 PF00497.15 gi|116754247|ref|YP_843365.1| - 0.0061 15.8 0.0 0.013 14.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF3135 PF11333.3 gi|116754247|ref|YP_843365.1| - 0.075 13.1 0.0 0.69 10.1 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3135) DUF3834 PF12916.2 gi|116754247|ref|YP_843365.1| - 0.083 11.8 0.0 0.16 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) UPF0278 PF08745.6 gi|116754248|ref|YP_843366.1| - 1.1e-85 286.1 0.0 1.2e-85 285.9 0.0 1.0 1 0 0 1 1 1 1 UPF0278 family TPR_12 PF13424.1 gi|116754249|ref|YP_843367.1| - 8.3e-40 134.5 9.7 7.4e-13 48.2 0.0 5.6 3 1 0 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|116754249|ref|YP_843367.1| - 1.4e-34 117.5 17.4 1.7e-09 37.2 0.0 5.5 1 1 6 7 7 7 6 TPR repeat TPR_1 PF00515.23 gi|116754249|ref|YP_843367.1| - 4.5e-30 101.9 6.3 1.2e-06 27.8 0.1 7.6 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|116754249|ref|YP_843367.1| - 8e-28 94.0 3.8 0.00017 21.0 0.0 8.2 6 1 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|116754249|ref|YP_843367.1| - 5.2e-25 85.3 18.7 0.00011 21.7 0.0 8.1 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|116754249|ref|YP_843367.1| - 6.4e-24 81.9 6.6 6.3e-06 25.6 0.1 7.2 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|116754249|ref|YP_843367.1| - 5.1e-18 63.9 15.6 0.067 13.8 0.0 8.9 5 3 4 9 9 9 5 Tetratricopeptide repeat SNAP PF14938.1 gi|116754249|ref|YP_843367.1| - 5.8e-13 48.6 0.4 0.00033 19.9 0.0 4.1 1 1 3 4 4 4 3 Soluble NSF attachment protein, SNAP TPR_10 PF13374.1 gi|116754249|ref|YP_843367.1| - 1.1e-12 47.4 14.9 0.06 13.3 0.2 7.5 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|116754249|ref|YP_843367.1| - 1.5e-10 40.8 3.3 2 9.0 0.0 7.3 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|116754249|ref|YP_843367.1| - 4.5e-10 39.7 5.3 0.0016 18.7 0.0 5.6 4 2 3 7 7 6 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|116754249|ref|YP_843367.1| - 3.9e-08 32.8 0.7 1.4 9.3 0.0 5.7 4 1 0 5 5 4 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|116754249|ref|YP_843367.1| - 3.5e-07 30.6 22.7 0.041 14.5 0.0 5.8 4 1 1 6 6 6 3 Tetratricopeptide repeat Foie-gras_1 PF11817.3 gi|116754249|ref|YP_843367.1| - 0.00031 20.3 8.0 0.13 11.6 0.0 3.8 3 1 0 4 4 4 2 Foie gras liver health family 1 RPN7 PF10602.4 gi|116754249|ref|YP_843367.1| - 0.0071 15.7 3.1 7.8 5.8 0.1 4.6 2 2 0 3 3 3 1 26S proteasome subunit RPN7 TPR_4 PF07721.9 gi|116754249|ref|YP_843367.1| - 0.017 15.5 12.7 1.7 9.2 0.0 6.2 7 0 0 7 7 5 0 Tetratricopeptide repeat Coat_F PF07875.7 gi|116754249|ref|YP_843367.1| - 0.051 13.7 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Coat F domain MIT PF04212.13 gi|116754249|ref|YP_843367.1| - 6.8 6.6 13.8 0.54 10.1 0.2 5.1 5 1 1 6 6 6 0 MIT (microtubule interacting and transport) domain UbiD PF01977.11 gi|116754250|ref|YP_843368.1| - 3.9e-109 364.7 1.4 4.5e-109 364.5 1.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Lactamase_B PF00753.22 gi|116754251|ref|YP_843369.1| - 2.3e-14 53.4 3.1 1.2e-12 47.8 2.1 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|116754251|ref|YP_843369.1| - 0.015 14.8 0.2 0.036 13.6 0.1 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF2088 PF09861.4 gi|116754251|ref|YP_843369.1| - 0.039 12.9 0.1 0.057 12.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) tRNA_anti-codon PF01336.20 gi|116754252|ref|YP_843370.1| - 3.4e-06 26.8 0.0 5e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|116754252|ref|YP_843370.1| - 0.025 14.0 0.2 0.043 13.2 0.0 1.4 2 0 0 2 2 2 0 tRNA_anti-like DUF4131 PF13567.1 gi|116754252|ref|YP_843370.1| - 0.046 13.1 0.4 0.4 10.0 0.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) UPF0047 PF01894.12 gi|116754253|ref|YP_843371.1| - 7.1e-35 119.3 0.0 8.1e-35 119.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Glycos_transf_4 PF00953.16 gi|116754254|ref|YP_843372.1| - 6.2e-32 110.5 17.6 6.2e-32 110.5 12.2 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 4 Wzz PF02706.10 gi|116754255|ref|YP_843373.1| - 2.4e-17 63.1 1.2 6.9e-17 61.6 0.1 2.3 2 1 0 2 2 2 1 Chain length determinant protein GNVR PF13807.1 gi|116754255|ref|YP_843373.1| - 2.1e-08 33.7 0.2 2.1e-08 33.7 0.1 1.7 2 0 0 2 2 2 1 G-rich domain on putative tyrosine kinase Acylphosphatase PF00708.13 gi|116754256|ref|YP_843374.1| - 3e-20 72.1 0.1 7.1e-20 70.9 0.0 1.7 2 0 0 2 2 2 1 Acylphosphatase CK2S PF15011.1 gi|116754256|ref|YP_843374.1| - 0.0094 15.7 1.4 0.017 14.8 0.8 1.6 1 1 0 1 1 1 1 Casein Kinase 2 substrate XhlA PF10779.4 gi|116754256|ref|YP_843374.1| - 0.032 14.1 5.5 0.096 12.6 3.8 1.7 1 1 0 1 1 1 0 Haemolysin XhlA Acylphosphatase PF00708.13 gi|116754258|ref|YP_843376.1| - 1.3e-23 82.9 0.3 2.7e-23 81.8 0.2 1.6 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.7 gi|116754258|ref|YP_843376.1| - 0.0082 15.8 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1115) CK2S PF15011.1 gi|116754258|ref|YP_843376.1| - 0.029 14.1 1.2 0.057 13.2 0.8 1.5 1 0 0 1 1 1 0 Casein Kinase 2 substrate T2SM_b PF10741.4 gi|116754258|ref|YP_843376.1| - 0.033 13.7 0.0 0.071 12.7 0.0 1.5 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b DUF1876 PF08962.6 gi|116754258|ref|YP_843376.1| - 0.067 12.9 0.7 0.31 10.8 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1876) TPR_2 PF07719.12 gi|116754258|ref|YP_843376.1| - 0.11 12.4 0.2 5.9 7.0 0.0 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat XhlA PF10779.4 gi|116754258|ref|YP_843376.1| - 0.37 10.7 9.6 10 6.1 6.1 2.5 1 1 0 1 1 1 0 Haemolysin XhlA Atg14 PF10186.4 gi|116754258|ref|YP_843376.1| - 2.9 6.7 5.3 5.9 5.7 3.7 1.3 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 ABC_tran_2 PF12848.2 gi|116754258|ref|YP_843376.1| - 9 6.2 9.1 27 4.7 6.4 1.7 1 1 0 1 1 1 0 ABC transporter Acylphosphatase PF00708.13 gi|116754259|ref|YP_843377.1| - 1.1e-22 79.9 0.1 2.8e-22 78.6 0.1 1.7 1 0 0 1 1 1 1 Acylphosphatase DUF3584 PF12128.3 gi|116754259|ref|YP_843377.1| - 0.0044 14.4 12.8 0.0059 14.0 8.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) T2SM_b PF10741.4 gi|116754259|ref|YP_843377.1| - 0.0049 16.4 0.0 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M subtype b DUF3552 PF12072.3 gi|116754259|ref|YP_843377.1| - 0.01 15.0 14.8 0.017 14.3 10.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DUF1115 PF06544.7 gi|116754259|ref|YP_843377.1| - 0.012 15.2 0.9 0.024 14.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1115) XhlA PF10779.4 gi|116754259|ref|YP_843377.1| - 0.1 12.4 17.7 1.3 9.0 3.0 3.6 1 1 2 3 3 3 0 Haemolysin XhlA GBP_C PF02841.9 gi|116754259|ref|YP_843377.1| - 0.13 11.4 14.0 0.16 11.1 9.7 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain GAGA_bind PF06217.7 gi|116754259|ref|YP_843377.1| - 0.46 10.4 4.1 0.64 9.9 2.8 1.2 1 0 0 1 1 1 0 GAGA binding protein-like family HSP70 PF00012.15 gi|116754259|ref|YP_843377.1| - 0.73 7.6 6.7 0.86 7.4 4.6 1.1 1 0 0 1 1 1 0 Hsp70 protein PMC2NT PF08066.7 gi|116754259|ref|YP_843377.1| - 0.89 9.8 5.5 8.1 6.8 3.2 2.7 1 1 0 1 1 1 0 PMC2NT (NUC016) domain DltD_M PF04918.7 gi|116754259|ref|YP_843377.1| - 0.95 9.6 6.1 4.5 7.4 4.3 2.0 1 1 0 1 1 1 0 DltD central region DUF745 PF05335.8 gi|116754259|ref|YP_843377.1| - 2.4 7.6 9.7 3.7 7.0 6.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF745) ERM PF00769.14 gi|116754259|ref|YP_843377.1| - 3.9 6.9 21.8 6 6.3 15.1 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family OmpH PF03938.9 gi|116754259|ref|YP_843377.1| - 6.4 6.6 14.0 13 5.7 9.7 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) V_ATPase_I PF01496.14 gi|116754259|ref|YP_843377.1| - 9.5 3.9 8.5 12 3.5 5.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Acylphosphatase PF00708.13 gi|116754260|ref|YP_843378.1| - 1.1e-22 79.9 0.4 2.6e-22 78.7 0.3 1.6 1 0 0 1 1 1 1 Acylphosphatase DUF3552 PF12072.3 gi|116754260|ref|YP_843378.1| - 0.0072 15.5 11.1 0.012 14.8 7.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) DUF1115 PF06544.7 gi|116754260|ref|YP_843378.1| - 0.018 14.6 0.8 0.034 13.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1115) CK2S PF15011.1 gi|116754260|ref|YP_843378.1| - 0.058 13.1 3.3 0.1 12.3 1.5 2.0 2 1 0 2 2 2 0 Casein Kinase 2 substrate DUF1876 PF08962.6 gi|116754260|ref|YP_843378.1| - 0.082 12.6 1.7 0.35 10.6 0.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1876) XhlA PF10779.4 gi|116754260|ref|YP_843378.1| - 0.45 10.4 15.6 19 5.2 7.1 3.3 1 1 1 2 2 2 0 Haemolysin XhlA GBP_C PF02841.9 gi|116754260|ref|YP_843378.1| - 1.2 8.2 11.2 1.4 8.0 7.8 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain DUF3450 PF11932.3 gi|116754260|ref|YP_843378.1| - 5.9 6.0 15.7 0.86 8.8 6.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Acylphosphatase PF00708.13 gi|116754261|ref|YP_843379.1| - 5.9e-22 77.5 0.3 1.2e-21 76.5 0.2 1.5 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.7 gi|116754261|ref|YP_843379.1| - 0.0096 15.5 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1115) CK2S PF15011.1 gi|116754261|ref|YP_843379.1| - 0.015 15.1 1.4 0.03 14.0 0.7 1.8 1 1 1 2 2 2 0 Casein Kinase 2 substrate UPF0227 PF05728.7 gi|116754261|ref|YP_843379.1| - 0.13 12.0 0.9 0.26 11.0 0.6 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) XhlA PF10779.4 gi|116754261|ref|YP_843379.1| - 0.32 10.9 8.3 3.1 7.7 5.4 2.4 1 1 0 1 1 1 0 Haemolysin XhlA ABC_tran_2 PF12848.2 gi|116754261|ref|YP_843379.1| - 4.7 7.1 8.0 13 5.7 5.6 1.7 1 1 0 1 1 1 0 ABC transporter UDPG_MGDP_dh_N PF03721.9 gi|116754262|ref|YP_843380.1| - 1.7e-57 193.8 0.0 2.5e-57 193.2 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|116754262|ref|YP_843380.1| - 9.2e-35 118.7 0.0 3.6e-34 116.8 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|116754262|ref|YP_843380.1| - 1.4e-15 57.3 0.0 1.1e-14 54.4 0.0 2.4 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pyr_redox PF00070.22 gi|116754262|ref|YP_843380.1| - 1.5e-05 25.2 4.7 1.9e-05 25.0 0.2 3.1 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|116754262|ref|YP_843380.1| - 2.5e-05 24.0 0.0 0.0001 22.0 0.0 2.0 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|116754262|ref|YP_843380.1| - 3.1e-05 23.4 0.0 4.9e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|116754262|ref|YP_843380.1| - 4.3e-05 23.5 1.1 7.7e-05 22.7 0.1 2.0 3 0 0 3 3 2 1 NADH(P)-binding DAO PF01266.19 gi|116754262|ref|YP_843380.1| - 0.00037 19.5 2.5 0.00069 18.6 0.8 2.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|116754262|ref|YP_843380.1| - 0.00057 19.0 0.3 0.0013 17.8 0.2 1.6 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|116754262|ref|YP_843380.1| - 0.0012 18.7 0.1 0.039 13.8 0.5 2.5 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|116754262|ref|YP_843380.1| - 0.0021 17.7 0.3 0.0057 16.3 0.1 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|116754262|ref|YP_843380.1| - 0.0046 16.9 0.2 0.0046 16.9 0.1 3.0 4 0 0 4 4 3 1 NAD(P)-binding Rossmann-like domain TraB PF01963.12 gi|116754262|ref|YP_843380.1| - 0.0068 15.8 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 TraB family FAD_binding_2 PF00890.19 gi|116754262|ref|YP_843380.1| - 0.012 14.4 0.5 0.069 11.9 0.1 2.1 2 0 0 2 2 2 0 FAD binding domain HI0933_like PF03486.9 gi|116754262|ref|YP_843380.1| - 0.016 13.6 1.0 0.11 10.9 0.4 2.0 1 1 1 2 2 2 0 HI0933-like protein F420_oxidored PF03807.12 gi|116754262|ref|YP_843380.1| - 0.024 15.0 0.1 0.63 10.5 0.2 2.6 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|116754262|ref|YP_843380.1| - 0.15 12.0 0.3 0.72 9.8 0.0 2.4 3 0 0 3 3 3 0 TrkA-N domain RmlD_sub_bind PF04321.12 gi|116754263|ref|YP_843381.1| - 1.3e-99 332.7 0.0 1.4e-99 332.5 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|116754263|ref|YP_843381.1| - 4.3e-20 72.1 0.0 1.1e-19 70.8 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|116754263|ref|YP_843381.1| - 2.8e-11 42.8 0.3 1.5e-09 37.2 0.0 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|116754263|ref|YP_843381.1| - 3.1e-08 32.8 0.0 4.6e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|116754263|ref|YP_843381.1| - 2.1e-07 29.9 0.0 7.2e-07 28.1 0.0 1.8 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|116754263|ref|YP_843381.1| - 0.0026 17.8 0.0 0.0045 17.0 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding Semialdhyde_dh PF01118.19 gi|116754263|ref|YP_843381.1| - 0.12 12.6 0.1 0.28 11.4 0.1 1.6 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NTP_transferase PF00483.18 gi|116754264|ref|YP_843382.1| - 3.2e-55 187.1 0.0 3.9e-55 186.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|116754264|ref|YP_843382.1| - 2.3e-10 40.7 0.0 3.3e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|116754264|ref|YP_843382.1| - 0.0005 19.4 8.0 0.87 9.2 0.1 4.8 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.7 gi|116754264|ref|YP_843382.1| - 0.00072 18.2 0.3 0.00099 17.7 0.2 1.1 1 0 0 1 1 1 1 L-fucokinase Hexapep_2 PF14602.1 gi|116754264|ref|YP_843382.1| - 2.5 7.7 8.6 0.56 9.8 1.0 3.3 4 1 1 5 5 5 0 Hexapeptide repeat of succinyl-transferase dTDP_sugar_isom PF00908.12 gi|116754265|ref|YP_843383.1| - 5e-76 253.9 0.0 5.7e-76 253.7 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Epimerase PF01370.16 gi|116754266|ref|YP_843384.1| - 2e-71 240.2 0.0 2.5e-71 239.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|116754266|ref|YP_843384.1| - 1.1e-22 80.2 0.0 1.4e-22 79.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|116754266|ref|YP_843384.1| - 6.1e-21 74.3 0.0 7.9e-21 73.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|116754266|ref|YP_843384.1| - 1.8e-18 66.3 0.0 9.1e-18 64.0 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|116754266|ref|YP_843384.1| - 1.5e-15 56.8 0.0 9.5e-15 54.2 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|116754266|ref|YP_843384.1| - 3.4e-09 36.9 0.0 4.9e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|116754266|ref|YP_843384.1| - 1.6e-07 31.3 0.5 2.4e-06 27.5 0.3 2.2 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|116754266|ref|YP_843384.1| - 0.072 12.7 0.0 0.25 10.9 0.0 1.9 2 1 0 2 2 2 0 KR domain DUF2460 PF09343.5 gi|116754266|ref|YP_843384.1| - 0.092 12.0 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 2217 (DUF2460) Saccharop_dh PF03435.13 gi|116754266|ref|YP_843384.1| - 0.17 10.8 0.0 0.25 10.2 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Polysacc_synt PF01943.12 gi|116754268|ref|YP_843386.1| - 2.1e-18 66.5 26.1 2.1e-18 66.5 18.1 2.9 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|116754268|ref|YP_843386.1| - 4.9e-11 42.5 27.4 4.9e-11 42.5 19.0 2.8 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein FrhB_FdhB_C PF04432.8 gi|116754269|ref|YP_843387.1| - 2e-29 102.0 0.0 3.1e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|116754269|ref|YP_843387.1| - 2.4e-13 49.7 0.0 4.2e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|116754269|ref|YP_843387.1| - 6.4e-08 31.8 14.5 3.1e-06 26.5 1.2 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|116754269|ref|YP_843387.1| - 1.2e-06 28.6 10.5 1.3e-06 28.5 4.9 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116754269|ref|YP_843387.1| - 2.3e-06 27.8 7.2 2.3e-06 27.8 5.0 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754269|ref|YP_843387.1| - 2.3e-05 24.1 9.1 2.3e-05 24.1 6.3 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116754269|ref|YP_843387.1| - 3.9e-05 23.5 8.0 0.029 14.4 0.3 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|116754269|ref|YP_843387.1| - 6.1e-05 22.7 18.5 0.0004 20.1 0.3 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116754269|ref|YP_843387.1| - 0.00012 21.8 9.2 0.00012 21.8 6.4 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754269|ref|YP_843387.1| - 0.00059 20.1 11.3 0.009 16.3 0.4 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116754269|ref|YP_843387.1| - 0.003 18.0 3.5 0.0048 17.4 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|116754269|ref|YP_843387.1| - 0.0047 16.7 17.7 0.0099 15.7 1.8 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|116754269|ref|YP_843387.1| - 0.0096 16.3 1.4 0.0096 16.3 0.9 2.8 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|116754269|ref|YP_843387.1| - 0.012 15.9 1.8 0.012 15.9 1.2 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain DUF2218 PF09981.4 gi|116754269|ref|YP_843387.1| - 0.087 13.0 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) Fer4_16 PF13484.1 gi|116754269|ref|YP_843387.1| - 0.09 13.5 16.0 0.12 13.0 6.7 3.0 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|116754269|ref|YP_843387.1| - 0.21 11.9 8.3 0.12 12.8 1.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|116754269|ref|YP_843387.1| - 0.26 11.9 23.1 0.22 12.1 3.4 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain PS_pyruv_trans PF04230.8 gi|116754270|ref|YP_843388.1| - 1.1e-44 153.2 0.2 1.3e-44 153.0 0.1 1.0 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Glycos_transf_2 PF00535.21 gi|116754271|ref|YP_843389.1| - 2.9e-43 147.4 0.1 3.9e-43 147.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|116754271|ref|YP_843389.1| - 2.7e-25 89.5 0.0 3.6e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|116754271|ref|YP_843389.1| - 3.7e-24 85.2 0.1 4.8e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|116754271|ref|YP_843389.1| - 0.00045 20.4 0.1 0.0008 19.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 GNT-I PF03071.10 gi|116754271|ref|YP_843389.1| - 0.0027 16.3 0.0 0.0037 15.8 0.0 1.2 1 0 0 1 1 1 1 GNT-I family Glyco_trans_2_3 PF13632.1 gi|116754271|ref|YP_843389.1| - 0.089 12.4 0.0 0.19 11.4 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Jacalin PF01419.12 gi|116754271|ref|YP_843389.1| - 0.099 12.5 0.1 0.21 11.4 0.1 1.5 1 0 0 1 1 1 0 Jacalin-like lectin domain Glycos_transf_2 PF00535.21 gi|116754274|ref|YP_843392.1| - 2.5e-15 56.5 0.6 3.5e-15 56.1 0.4 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|116754274|ref|YP_843392.1| - 2.3e-08 33.4 0.3 3.7e-08 32.7 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|116754274|ref|YP_843392.1| - 0.00013 21.8 0.0 0.00026 20.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|116754274|ref|YP_843392.1| - 0.00043 20.0 0.0 0.00069 19.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|116754274|ref|YP_843392.1| - 0.02 14.2 0.0 0.084 12.1 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|116754275|ref|YP_843393.1| - 3.6e-13 49.5 0.1 6.6e-13 48.6 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|116754275|ref|YP_843393.1| - 5.4e-12 45.9 0.0 7e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|116754275|ref|YP_843393.1| - 1.3e-09 38.0 0.2 6.1e-09 35.8 0.1 1.9 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|116754275|ref|YP_843393.1| - 6.1e-07 28.9 0.8 0.00013 21.2 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family Glyco_transf_7C PF02709.9 gi|116754275|ref|YP_843393.1| - 0.025 14.0 0.1 0.071 12.5 0.1 1.8 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Glyco_transf_21 PF13506.1 gi|116754275|ref|YP_843393.1| - 0.048 12.9 0.0 0.38 10.0 0.0 2.0 1 1 0 1 1 1 0 Glycosyl transferase family 21 HTH_29 PF13551.1 gi|116754276|ref|YP_843394.1| - 1.6e-26 92.6 0.2 3.8e-26 91.4 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|116754276|ref|YP_843394.1| - 1e-12 47.2 0.5 1.6e-10 40.2 0.1 2.4 2 0 0 2 2 2 2 Homeodomain-like domain HTH_32 PF13565.1 gi|116754276|ref|YP_843394.1| - 1.7e-12 47.9 0.3 1.5e-11 44.8 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|116754276|ref|YP_843394.1| - 1.1e-06 28.5 0.2 8.2e-06 25.7 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain PAX PF00292.13 gi|116754276|ref|YP_843394.1| - 0.11 12.2 0.0 0.25 11.0 0.0 1.6 1 1 0 1 1 1 0 'Paired box' domain HTH_7 PF02796.10 gi|116754276|ref|YP_843394.1| - 0.14 12.0 0.8 15 5.5 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DDE_3 PF13358.1 gi|116754277|ref|YP_843395.1| - 6.6e-20 71.3 0.0 8.9e-20 70.9 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease MutS_I PF01624.15 gi|116754277|ref|YP_843395.1| - 0.037 14.0 0.0 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 MutS domain I Methyltransf_23 PF13489.1 gi|116754278|ref|YP_843396.1| - 2.5e-10 40.2 0.0 3.3e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|116754278|ref|YP_843396.1| - 3e-08 34.0 0.0 4.6e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116754278|ref|YP_843396.1| - 1.7e-06 27.7 0.3 3e-06 26.9 0.2 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|116754278|ref|YP_843396.1| - 1.7e-05 25.1 0.1 5.9e-05 23.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754278|ref|YP_843396.1| - 0.0074 16.6 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.13 gi|116754278|ref|YP_843396.1| - 0.01 15.1 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain Methyltransf_18 PF12847.2 gi|116754278|ref|YP_843396.1| - 0.023 15.3 0.0 0.13 12.8 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain DDE_Tnp_1_5 PF13737.1 gi|116754279|ref|YP_843397.1| - 1.2e-28 99.4 0.0 2.9e-27 95.0 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|116754279|ref|YP_843397.1| - 1.9e-20 73.3 0.4 4.5e-20 72.1 0.2 1.6 1 1 0 1 1 1 1 Transposase DDE domain rve PF00665.21 gi|116754279|ref|YP_843397.1| - 0.12 12.4 0.1 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain Peripla_BP_2 PF01497.13 gi|116754280|ref|YP_843398.1| - 1.6e-29 102.7 0.0 2.1e-29 102.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF3387 PF11867.3 gi|116754281|ref|YP_843399.1| - 1.9e-11 43.5 0.3 2.3e-11 43.2 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) OTCace PF00185.19 gi|116754282|ref|YP_843400.1| - 5.6e-51 172.5 0.0 8.4e-51 171.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|116754282|ref|YP_843400.1| - 4.8e-49 165.6 0.0 7.4e-49 165.0 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Musclin PF11037.3 gi|116754282|ref|YP_843400.1| - 0.065 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Insulin-resistance promoting peptide in skeletal muscle Molydop_binding PF01568.16 gi|116754283|ref|YP_843401.1| - 5.6e-20 71.2 0.0 7e-20 70.9 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain ESX-1_EspG PF14011.1 gi|116754283|ref|YP_843401.1| - 0.018 14.2 0.0 0.025 13.8 0.0 1.2 1 0 0 1 1 1 0 EspG family TPP_enzyme_M PF00205.17 gi|116754284|ref|YP_843402.1| - 0.00011 21.9 0.1 0.11 12.2 0.0 2.8 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|116754284|ref|YP_843402.1| - 0.08 12.4 0.1 0.2 11.2 0.0 1.6 2 0 0 2 2 2 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit FeS PF04060.8 gi|116754285|ref|YP_843403.1| - 9.9e-15 53.8 1.3 9.9e-15 53.8 0.9 2.2 2 0 0 2 2 1 1 Putative Fe-S cluster Fer4 PF00037.22 gi|116754285|ref|YP_843403.1| - 2.4e-08 33.2 18.7 6.1e-07 28.7 3.2 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116754285|ref|YP_843403.1| - 3e-06 26.8 3.3 3e-06 26.8 2.3 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116754285|ref|YP_843403.1| - 3.5e-06 27.3 19.0 0.00054 20.2 5.8 3.2 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754285|ref|YP_843403.1| - 2.3e-05 24.0 2.8 2.3e-05 24.0 1.9 3.4 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|116754285|ref|YP_843403.1| - 7.8e-05 22.4 19.0 0.00051 19.7 9.3 3.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754285|ref|YP_843403.1| - 0.00021 21.5 11.3 0.00021 21.5 7.8 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|116754285|ref|YP_843403.1| - 0.00022 21.0 17.3 0.00047 19.9 0.9 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|116754285|ref|YP_843403.1| - 0.00042 20.6 2.5 0.00042 20.6 1.8 2.6 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116754285|ref|YP_843403.1| - 0.00067 19.6 27.6 0.0065 16.4 5.6 3.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754285|ref|YP_843403.1| - 0.0007 20.2 16.0 0.25 12.0 0.4 2.9 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|116754285|ref|YP_843403.1| - 0.0013 19.0 14.2 0.0023 18.2 3.4 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116754285|ref|YP_843403.1| - 0.0013 19.2 0.4 0.0013 19.2 0.3 2.7 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|116754285|ref|YP_843403.1| - 0.014 15.2 3.0 0.014 15.2 2.1 3.0 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|116754285|ref|YP_843403.1| - 0.037 14.5 24.3 0.066 13.8 5.3 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|116754285|ref|YP_843403.1| - 0.041 14.2 22.0 0.058 13.7 2.3 3.7 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|116754285|ref|YP_843403.1| - 0.042 14.2 13.0 0.37 11.2 5.7 3.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain YhfH PF14149.1 gi|116754285|ref|YP_843403.1| - 0.099 12.4 0.1 0.099 12.4 0.1 2.9 3 0 0 3 3 3 0 YhfH-like protein dCMP_cyt_deam_1 PF00383.17 gi|116754286|ref|YP_843404.1| - 0.075 12.6 0.0 0.096 12.3 0.0 1.2 1 0 0 1 1 1 0 Cytidine and deoxycytidylate deaminase zinc-binding region CCG PF02754.11 gi|116754287|ref|YP_843405.1| - 9e-33 112.1 11.4 7e-17 61.2 0.0 2.9 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|116754287|ref|YP_843405.1| - 7.8e-09 35.4 4.1 7.8e-09 35.4 2.8 3.4 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116754287|ref|YP_843405.1| - 2.7e-07 30.8 7.6 2.7e-07 30.8 5.3 3.2 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754287|ref|YP_843405.1| - 5.1e-07 29.9 4.9 5.1e-07 29.9 3.4 3.1 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754287|ref|YP_843405.1| - 5.8e-05 23.2 8.7 5.8e-05 23.2 6.1 3.9 3 2 2 5 5 5 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|116754287|ref|YP_843405.1| - 0.0001 22.6 17.6 0.049 14.0 0.9 4.5 5 0 0 5 5 5 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754287|ref|YP_843405.1| - 0.00016 21.4 9.5 0.00016 21.4 6.6 3.3 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754287|ref|YP_843405.1| - 0.00025 21.7 9.0 0.00025 21.7 6.2 3.2 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain CRIC_ras_sig PF10534.4 gi|116754287|ref|YP_843405.1| - 0.013 15.5 0.0 0.031 14.3 0.0 1.6 1 0 0 1 1 1 0 Connector enhancer of kinase suppressor of ras Fer4_2 PF12797.2 gi|116754287|ref|YP_843405.1| - 0.082 12.8 14.7 0.23 11.4 1.1 3.7 3 0 0 3 3 3 0 4Fe-4S binding domain Nitrate_red_gam PF02665.9 gi|116754288|ref|YP_843406.1| - 0.00024 20.5 18.8 0.086 12.1 10.7 3.0 1 1 1 2 2 2 1 Nitrate reductase gamma subunit DUF4149 PF13664.1 gi|116754288|ref|YP_843406.1| - 2.4 8.2 13.2 0.14 12.2 1.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4149) UPF0114 PF03350.11 gi|116754288|ref|YP_843406.1| - 9.5 6.1 10.8 38 4.2 3.9 3.2 2 1 0 2 2 2 0 Uncharacterized protein family, UPF0114 HTH_34 PF13601.1 gi|116754289|ref|YP_843407.1| - 0.00042 20.3 0.0 0.00076 19.4 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|116754289|ref|YP_843407.1| - 0.0021 17.6 1.0 0.031 13.9 0.1 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|116754289|ref|YP_843407.1| - 0.0086 15.8 0.1 0.022 14.5 0.0 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family DUF387 PF04079.11 gi|116754289|ref|YP_843407.1| - 0.018 14.4 0.4 0.056 12.8 0.1 1.8 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) HTH_27 PF13463.1 gi|116754289|ref|YP_843407.1| - 0.058 13.7 0.2 0.66 10.3 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HSA PF07529.8 gi|116754289|ref|YP_843407.1| - 0.11 12.3 0.8 4.4 7.1 0.6 2.2 2 0 0 2 2 2 0 HSA Peptidase_M15_3 PF08291.6 gi|116754289|ref|YP_843407.1| - 0.18 11.6 0.4 1.6 8.5 0.0 2.0 2 0 0 2 2 2 0 Peptidase M15 ThiS PF02597.15 gi|116754290|ref|YP_843408.1| - 0.0012 19.1 0.1 0.0014 19.0 0.0 1.1 1 0 0 1 1 1 1 ThiS family DUF1119 PF06550.6 gi|116754292|ref|YP_843410.1| - 1.2e-74 251.0 21.6 1.4e-74 250.7 15.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) DUF1212 PF06738.7 gi|116754292|ref|YP_843410.1| - 0.0053 16.2 3.4 0.0053 16.2 2.4 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1212) DNA_ligase_A_N PF04675.9 gi|116754293|ref|YP_843411.1| - 9.8e-22 77.6 0.0 3.9e-20 72.3 0.0 2.3 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_M PF01068.16 gi|116754293|ref|YP_843411.1| - 4.6e-08 32.6 0.1 1.3e-07 31.2 0.0 1.6 1 1 0 1 1 1 1 ATP dependent DNA ligase domain Metalloenzyme PF01676.13 gi|116754294|ref|YP_843412.1| - 6.9e-15 55.1 0.0 2.4e-14 53.3 0.0 1.8 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|116754294|ref|YP_843412.1| - 2e-14 53.7 0.0 3.5e-10 39.7 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|116754294|ref|YP_843412.1| - 1.6e-10 40.6 0.0 2.5e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Alk_phosphatase PF00245.15 gi|116754294|ref|YP_843412.1| - 0.00035 19.3 0.0 0.0011 17.7 0.0 1.7 2 0 0 2 2 2 1 Alkaline phosphatase Fae PF08714.6 gi|116754295|ref|YP_843413.1| - 2.2e-73 245.2 0.2 4e-73 244.4 0.2 1.4 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|116754295|ref|YP_843413.1| - 1.4e-20 73.7 1.0 4.4e-20 72.0 0.7 1.8 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|116754295|ref|YP_843413.1| - 3.5e-06 26.4 0.4 0.00026 20.3 0.0 2.3 2 0 0 2 2 2 1 PcrB family Ribul_P_3_epim PF00834.14 gi|116754295|ref|YP_843413.1| - 1.8e-05 23.9 1.3 0.00015 20.9 0.9 2.4 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|116754295|ref|YP_843413.1| - 0.00018 21.0 0.3 0.00051 19.6 0.1 1.7 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.13 gi|116754295|ref|YP_843413.1| - 0.00051 19.0 0.6 0.00076 18.4 0.4 1.2 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IGPS PF00218.16 gi|116754295|ref|YP_843413.1| - 0.012 14.7 0.3 0.033 13.2 0.2 1.9 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|116754295|ref|YP_843413.1| - 0.012 14.9 0.2 0.024 13.8 0.1 1.5 1 1 0 1 1 1 0 Histidine biosynthesis protein NanE PF04131.9 gi|116754295|ref|YP_843413.1| - 0.028 13.3 0.1 0.053 12.4 0.1 1.6 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|116754295|ref|YP_843413.1| - 0.037 13.1 0.7 0.067 12.3 0.2 1.6 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI ATP-sulfurylase PF01747.12 gi|116754295|ref|YP_843413.1| - 0.079 12.2 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 ATP-sulfurylase PRAI PF00697.17 gi|116754295|ref|YP_843413.1| - 0.12 11.9 0.2 0.36 10.3 0.1 2.0 1 1 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PseudoU_synth_1 PF01416.15 gi|116754296|ref|YP_843414.1| - 5.8e-27 94.1 0.0 9.1e-17 61.4 0.0 2.6 2 1 0 2 2 2 2 tRNA pseudouridine synthase Aconitase PF00330.15 gi|116754297|ref|YP_843415.1| - 1.3e-85 287.6 0.9 9.2e-58 195.8 0.2 2.6 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Amidohydro_1 PF01979.15 gi|116754298|ref|YP_843416.1| - 8.5e-51 173.5 0.0 1e-50 173.2 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|116754298|ref|YP_843416.1| - 3.6e-12 45.9 0.0 1.1e-11 44.3 0.0 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|116754298|ref|YP_843416.1| - 8.1e-12 45.7 0.1 5.4e-10 39.7 0.1 2.4 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|116754298|ref|YP_843416.1| - 2.5e-06 26.6 0.0 1.9e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|116754298|ref|YP_843416.1| - 5.5e-06 25.8 0.8 0.0025 17.1 0.1 2.5 2 1 0 2 2 2 2 Amidohydrolase family THUMP PF02926.12 gi|116754299|ref|YP_843417.1| - 2.3e-10 40.5 0.0 3.9e-09 36.5 0.0 2.6 2 1 0 2 2 2 1 THUMP domain TruB_N PF01509.13 gi|116754299|ref|YP_843417.1| - 0.038 14.1 0.0 0.48 10.5 0.0 2.3 1 1 0 1 1 1 0 TruB family pseudouridylate synthase (N terminal domain) Ribosomal_L21e PF01157.13 gi|116754300|ref|YP_843418.1| - 4.3e-29 100.2 0.5 4.7e-29 100.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|116754301|ref|YP_843419.1| - 1.1e-14 54.3 0.8 1.4e-14 54.0 0.6 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 EF-hand_8 PF13833.1 gi|116754301|ref|YP_843419.1| - 0.017 14.6 0.5 0.11 12.1 0.0 2.4 3 0 0 3 3 3 0 EF-hand domain pair DNA_ligase_A_N PF04675.9 gi|116754301|ref|YP_843419.1| - 0.026 14.3 0.3 0.047 13.5 0.2 1.4 1 0 0 1 1 1 0 DNA ligase N terminus HsbA PF12296.3 gi|116754301|ref|YP_843419.1| - 0.031 14.1 0.0 0.053 13.3 0.0 1.5 1 1 0 1 1 1 0 Hydrophobic surface binding protein A DUF3381 PF11861.3 gi|116754301|ref|YP_843419.1| - 0.064 12.7 0.0 0.12 11.8 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3381) HRDC PF00570.18 gi|116754301|ref|YP_843419.1| - 0.094 12.4 1.4 8.1 6.2 0.0 2.8 3 0 0 3 3 3 0 HRDC domain FumaraseC_C PF10415.4 gi|116754301|ref|YP_843419.1| - 0.12 12.5 5.6 2.9 8.0 0.1 3.0 2 1 1 3 3 3 0 Fumarase C C-terminus FliG_N PF14842.1 gi|116754301|ref|YP_843419.1| - 0.15 12.1 0.9 1.7 8.7 0.1 2.7 2 1 0 2 2 2 0 FliG N-terminal domain DUF655 PF04919.7 gi|116754302|ref|YP_843420.1| - 4.6e-64 215.4 0.1 5.3e-64 215.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|116754302|ref|YP_843420.1| - 1.9e-06 27.8 0.0 4.4e-06 26.6 0.0 1.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|116754302|ref|YP_843420.1| - 1e-05 25.3 0.0 2.5e-05 24.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif RC-P840_PscD PF10657.4 gi|116754302|ref|YP_843420.1| - 0.027 14.2 0.1 0.055 13.3 0.0 1.5 2 0 0 2 2 2 0 Photosystem P840 reaction centre protein PscD HTH_AsnC-type PF13404.1 gi|116754302|ref|YP_843420.1| - 0.03 13.8 0.0 1.2 8.7 0.1 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain RrnaAD PF00398.15 gi|116754303|ref|YP_843421.1| - 9.1e-55 185.5 0.0 1e-54 185.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|116754303|ref|YP_843421.1| - 6.2e-09 35.9 0.0 9.4e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116754303|ref|YP_843421.1| - 3.7e-08 33.9 0.0 5.6e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116754303|ref|YP_843421.1| - 3.6e-05 23.4 0.0 5e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|116754303|ref|YP_843421.1| - 0.00033 21.0 0.0 0.00076 19.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754303|ref|YP_843421.1| - 0.00043 20.6 0.0 0.00075 19.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116754303|ref|YP_843421.1| - 0.00069 19.3 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|116754303|ref|YP_843421.1| - 0.0078 15.7 0.0 0.025 14.0 0.0 1.7 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|116754303|ref|YP_843421.1| - 0.019 14.3 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain TrkA_N PF02254.13 gi|116754303|ref|YP_843421.1| - 0.028 14.4 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain MetW PF07021.7 gi|116754303|ref|YP_843421.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Met_10 PF02475.11 gi|116754303|ref|YP_843421.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein DsbD PF02683.10 gi|116754304|ref|YP_843422.1| - 3.1e-22 79.2 16.5 4.1e-22 78.8 11.4 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|116754304|ref|YP_843422.1| - 2.3e-13 50.3 19.7 1.1e-09 38.3 9.7 2.3 1 1 1 2 2 2 2 Cytochrome C biogenesis protein transmembrane region LAT PF15234.1 gi|116754306|ref|YP_843424.1| - 0.12 11.8 0.3 0.17 11.3 0.2 1.2 1 0 0 1 1 1 0 Linker for activation of T-cells Hist_deacetyl PF00850.14 gi|116754307|ref|YP_843425.1| - 3.9e-37 128.1 2.9 2e-25 89.7 0.5 3.0 1 1 2 3 3 3 3 Histone deacetylase domain GATase_3 PF07685.9 gi|116754308|ref|YP_843426.1| - 3.7e-35 120.8 0.1 5.7e-35 120.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|116754308|ref|YP_843426.1| - 1.6e-27 96.1 0.0 2.5e-27 95.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|116754308|ref|YP_843426.1| - 4.2e-19 68.9 1.1 3.8e-16 59.2 0.8 2.2 1 1 0 1 1 1 1 AAA domain Peptidase_S51 PF03575.12 gi|116754308|ref|YP_843426.1| - 0.00085 19.0 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase family S51 DUF1611 PF07755.6 gi|116754308|ref|YP_843426.1| - 0.024 13.3 0.0 0.066 11.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) GlpM PF06942.7 gi|116754308|ref|YP_843426.1| - 0.039 14.2 0.0 0.086 13.1 0.0 1.5 1 0 0 1 1 1 0 GlpM protein SNO PF01174.14 gi|116754308|ref|YP_843426.1| - 0.049 13.2 0.0 0.097 12.2 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family FTHFS PF01268.14 gi|116754308|ref|YP_843426.1| - 0.16 9.8 0.1 0.24 9.3 0.1 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase NTPase_1 PF03266.10 gi|116754308|ref|YP_843426.1| - 0.17 11.5 0.4 0.38 10.4 0.1 1.6 2 0 0 2 2 2 0 NTPase Asparaginase PF00710.15 gi|116754309|ref|YP_843427.1| - 1e-96 323.5 0.0 1.2e-96 323.2 0.0 1.0 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|116754309|ref|YP_843427.1| - 0.021 14.2 0.0 0.11 11.7 0.0 1.9 2 0 0 2 2 2 0 Periplasmic binding protein domain His_biosynth PF00977.16 gi|116754310|ref|YP_843428.1| - 7e-73 244.6 0.2 7.8e-73 244.5 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.10 gi|116754310|ref|YP_843428.1| - 1.8e-09 37.2 1.8 3.4e-06 26.4 0.2 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.12 gi|116754310|ref|YP_843428.1| - 8.6e-08 31.3 0.1 0.0043 15.9 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|116754310|ref|YP_843428.1| - 2.3e-06 26.8 0.6 0.00048 19.2 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|116754310|ref|YP_843428.1| - 2.6e-06 26.6 0.1 0.0017 17.3 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|116754310|ref|YP_843428.1| - 4.1e-06 26.0 1.7 0.0049 15.9 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|116754310|ref|YP_843428.1| - 4.2e-05 22.8 1.9 0.0087 15.3 0.1 2.4 2 1 0 2 2 2 2 PcrB family IGPS PF00218.16 gi|116754310|ref|YP_843428.1| - 0.00017 20.7 0.1 0.029 13.4 0.0 2.2 2 0 0 2 2 2 2 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|116754310|ref|YP_843428.1| - 0.00059 18.4 1.5 0.41 9.1 0.0 2.6 2 1 1 3 3 3 2 Tryptophan synthase alpha chain FMN_dh PF01070.13 gi|116754310|ref|YP_843428.1| - 0.0051 15.6 4.5 0.079 11.7 0.7 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|116754310|ref|YP_843428.1| - 0.0076 15.1 0.8 1.3 7.8 0.0 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|116754310|ref|YP_843428.1| - 0.016 14.1 0.2 1.9 7.3 0.0 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.7 gi|116754310|ref|YP_843428.1| - 0.03 13.2 0.1 0.047 12.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF561) G3P_antiterm PF04309.7 gi|116754310|ref|YP_843428.1| - 0.035 13.1 0.3 1.5 7.8 0.0 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator PEP_mutase PF13714.1 gi|116754310|ref|YP_843428.1| - 0.047 12.8 0.1 0.6 9.2 0.0 2.1 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase AdoHcyase PF05221.12 gi|116754311|ref|YP_843429.1| - 4.8e-66 222.4 0.0 5.4e-66 222.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|116754311|ref|YP_843429.1| - 3.5e-51 173.2 0.1 9.8e-51 171.8 0.0 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|116754311|ref|YP_843429.1| - 3.5e-09 36.0 0.6 9.9e-09 34.5 0.0 2.0 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|116754311|ref|YP_843429.1| - 1.9e-07 30.6 0.0 3.3e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|116754311|ref|YP_843429.1| - 0.0089 16.0 0.0 0.032 14.2 0.0 2.0 1 0 0 1 1 1 1 TrkA-N domain Pyr_redox_2 PF07992.9 gi|116754311|ref|YP_843429.1| - 0.013 15.4 0.3 0.031 14.1 0.2 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|116754311|ref|YP_843429.1| - 0.061 12.8 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain APH PF01636.18 gi|116754312|ref|YP_843430.1| - 2.7e-12 46.9 0.7 3.3e-12 46.6 0.5 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|116754312|ref|YP_843430.1| - 0.12 11.7 0.0 0.38 10.0 0.0 1.8 2 0 0 2 2 2 0 RIO1 family UPF0020 PF01170.13 gi|116754313|ref|YP_843431.1| - 7.6e-31 107.0 0.0 1.1e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|116754313|ref|YP_843431.1| - 3.7e-13 49.5 0.1 2e-12 47.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|116754313|ref|YP_843431.1| - 5.2e-06 26.8 0.0 1.7e-05 25.2 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|116754313|ref|YP_843431.1| - 1.3e-05 25.0 0.0 2.2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_25 PF13649.1 gi|116754313|ref|YP_843431.1| - 8.6e-05 22.8 0.0 0.0003 21.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|116754313|ref|YP_843431.1| - 0.00062 19.3 0.0 0.04 13.4 0.0 2.2 2 0 0 2 2 2 1 DNA methylase Cons_hypoth95 PF03602.10 gi|116754313|ref|YP_843431.1| - 0.0019 17.5 0.0 0.0086 15.4 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical protein 95 DUF1724 PF08350.5 gi|116754314|ref|YP_843432.1| - 1.2e-18 66.3 0.0 4.2e-18 64.6 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|116754314|ref|YP_843432.1| - 0.004 16.7 0.1 0.0096 15.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|116754314|ref|YP_843432.1| - 0.0048 16.5 0.1 0.01 15.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|116754314|ref|YP_843432.1| - 0.0081 15.9 0.1 0.017 14.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|116754314|ref|YP_843432.1| - 0.045 13.1 0.1 0.084 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF1846 PF08903.6 gi|116754314|ref|YP_843432.1| - 0.11 10.9 0.1 0.33 9.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1846) DUF3810 PF12725.2 gi|116754315|ref|YP_843433.1| - 3.1 6.6 13.0 0.56 9.0 1.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) E1-E2_ATPase PF00122.15 gi|116754316|ref|YP_843434.1| - 2.1e-70 236.3 5.8 2.1e-70 236.3 4.0 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|116754316|ref|YP_843434.1| - 3.5e-37 127.7 1.8 3.5e-37 127.7 1.2 1.8 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|116754316|ref|YP_843434.1| - 4.6e-29 102.3 4.3 2.1e-28 100.2 1.8 2.6 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|116754316|ref|YP_843434.1| - 7.4e-17 61.0 0.0 1.8e-16 59.8 0.0 1.7 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|116754316|ref|YP_843434.1| - 7.3e-14 52.3 0.0 3.3e-13 50.2 0.0 2.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|116754316|ref|YP_843434.1| - 1.2e-07 31.6 1.0 0.0005 19.7 0.4 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Isochorismatase PF00857.15 gi|116754316|ref|YP_843434.1| - 0.044 13.7 1.3 1.8 8.4 0.0 2.7 2 1 1 3 3 3 0 Isochorismatase family MS_channel PF00924.13 gi|116754317|ref|YP_843435.1| - 3.6e-39 134.2 0.2 5.1e-39 133.7 0.2 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel Radical_SAM PF04055.16 gi|116754318|ref|YP_843436.1| - 1.1e-21 77.7 0.9 7.7e-21 74.9 0.5 2.3 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|116754318|ref|YP_843436.1| - 1.2e-12 48.1 0.0 2e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|116754318|ref|YP_843436.1| - 2.1e-10 40.6 0.0 4.8e-10 39.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain AAA_18 PF13238.1 gi|116754319|ref|YP_843437.1| - 1.6e-16 60.7 0.1 4e-16 59.4 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|116754319|ref|YP_843437.1| - 5e-10 39.4 0.0 6.8e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|116754319|ref|YP_843437.1| - 1.9e-09 38.3 0.2 2.4e-09 38.0 0.2 1.3 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|116754319|ref|YP_843437.1| - 0.027 14.3 0.0 0.031 14.1 0.0 1.3 1 1 0 1 1 1 0 Adenylate kinase CoaE PF01121.15 gi|116754319|ref|YP_843437.1| - 0.039 13.3 0.1 0.16 11.3 0.0 1.9 2 0 0 2 2 2 0 Dephospho-CoA kinase HypA PF01155.14 gi|116754320|ref|YP_843438.1| - 0.00077 19.1 0.3 0.00079 19.0 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|116754320|ref|YP_843438.1| - 0.0021 17.9 3.1 0.0087 15.9 2.1 1.9 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|116754320|ref|YP_843438.1| - 0.0025 17.6 0.4 0.0029 17.3 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon FYDLN_acid PF09538.5 gi|116754320|ref|YP_843438.1| - 0.0038 17.7 0.5 0.0042 17.6 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) TFIIS_C PF01096.13 gi|116754320|ref|YP_843438.1| - 0.0049 16.4 2.0 0.55 9.9 0.1 2.1 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zf-RING_3 PF14369.1 gi|116754320|ref|YP_843438.1| - 0.023 14.6 0.4 6.1 6.9 0.1 2.2 2 0 0 2 2 2 0 zinc-finger zf-LYAR PF08790.6 gi|116754320|ref|YP_843438.1| - 0.042 13.5 0.1 0.067 12.9 0.1 1.3 1 0 0 1 1 1 0 LYAR-type C2HC zinc finger zf-C3HC4_3 PF13920.1 gi|116754320|ref|YP_843438.1| - 0.054 13.1 1.2 0.072 12.7 0.9 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.1 gi|116754320|ref|YP_843438.1| - 0.058 12.9 1.6 0.08 12.5 1.1 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain TF_Zn_Ribbon PF08271.7 gi|116754320|ref|YP_843438.1| - 0.066 12.5 4.0 2.7 7.3 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_5 PF14634.1 gi|116754320|ref|YP_843438.1| - 0.076 12.7 1.1 0.1 12.3 0.7 1.2 1 0 0 1 1 1 0 zinc-RING finger domain Zn_Tnp_IS1595 PF12760.2 gi|116754320|ref|YP_843438.1| - 0.1 12.4 2.1 1.5 8.6 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Prok-RING_1 PF14446.1 gi|116754320|ref|YP_843438.1| - 0.13 12.0 0.5 0.18 11.5 0.4 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DNA_RNApol_7kD PF03604.8 gi|116754320|ref|YP_843438.1| - 0.24 10.9 2.1 0.87 9.1 1.4 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF4428 PF14471.1 gi|116754320|ref|YP_843438.1| - 1.5 8.5 5.1 7.5 6.3 3.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) zf-IS66 PF13005.2 gi|116754320|ref|YP_843438.1| - 6.2 6.8 5.8 3.1 7.8 0.1 2.5 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 IGPD PF00475.13 gi|116754322|ref|YP_843440.1| - 1.6e-32 112.3 0.2 3.8e-32 111.1 0.1 1.6 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase DUF4265 PF14085.1 gi|116754322|ref|YP_843440.1| - 0.051 13.3 0.0 0.4 10.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) GcpE PF04551.9 gi|116754322|ref|YP_843440.1| - 0.13 10.9 0.1 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 GcpE protein PgpA PF04608.8 gi|116754323|ref|YP_843441.1| - 2.6e-09 37.0 0.0 4.5e-09 36.2 0.0 1.4 1 1 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.10 gi|116754324|ref|YP_843442.1| - 4.1e-54 183.6 13.7 4.8e-54 183.4 9.5 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase GerA PF03323.8 gi|116754324|ref|YP_843442.1| - 2.1 6.4 6.2 0.084 10.9 0.1 1.6 2 0 0 2 2 2 0 Bacillus/Clostridium GerA spore germination protein NTP_transf_3 PF12804.2 gi|116754325|ref|YP_843443.1| - 1.6e-18 67.3 0.0 2e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|116754325|ref|YP_843443.1| - 0.00015 21.4 0.0 0.00064 19.4 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase CofC PF01983.11 gi|116754325|ref|YP_843443.1| - 0.0022 17.0 0.0 0.0043 16.0 0.0 1.5 2 0 0 2 2 2 1 Guanylyl transferase CofC like DUF2064 PF09837.4 gi|116754325|ref|YP_843443.1| - 0.008 15.7 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) IspD PF01128.14 gi|116754325|ref|YP_843443.1| - 0.0087 15.6 0.0 0.037 13.5 0.0 1.8 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|116754325|ref|YP_843443.1| - 0.0092 15.2 0.0 0.02 14.2 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase Metallophos PF00149.23 gi|116754328|ref|YP_843446.1| - 7.1e-10 38.6 0.0 9.1e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|116754328|ref|YP_843446.1| - 4.7e-05 23.2 0.0 5.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DNA_pol_E_B PF04042.11 gi|116754328|ref|YP_843446.1| - 0.044 13.0 0.0 0.12 11.5 0.0 1.6 1 1 0 1 1 1 0 DNA polymerase alpha/epsilon subunit B Beta_helix PF13229.1 gi|116754329|ref|YP_843447.1| - 2.9e-36 124.5 100.4 7.6e-17 61.5 23.5 3.2 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.8 gi|116754329|ref|YP_843447.1| - 5.5e-34 117.3 60.7 5.3e-23 81.4 21.2 2.7 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) RdRP_3 PF00998.18 gi|116754329|ref|YP_843447.1| - 0.2 10.1 2.0 0.28 9.6 1.4 1.2 1 0 0 1 1 1 0 Viral RNA dependent RNA polymerase DDE_Tnp_1_5 PF13737.1 gi|116754330|ref|YP_843448.1| - 1.2e-28 99.4 0.0 2.9e-27 95.0 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|116754330|ref|YP_843448.1| - 1.9e-20 73.3 0.4 4.5e-20 72.1 0.2 1.6 1 1 0 1 1 1 1 Transposase DDE domain rve PF00665.21 gi|116754330|ref|YP_843448.1| - 0.12 12.4 0.1 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain Pentapeptide PF00805.17 gi|116754331|ref|YP_843449.1| - 5.9e-75 245.6 60.6 7.4e-14 50.6 3.7 10.2 3 1 7 11 11 11 10 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|116754331|ref|YP_843449.1| - 2.1e-52 174.8 4.7 2.2e-11 43.4 0.1 5.3 1 1 5 6 6 6 6 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|116754331|ref|YP_843449.1| - 6.4e-36 121.9 0.0 7e-06 25.8 1.1 8.4 1 1 7 8 8 8 8 Pentapeptide repeats (9 copies) CfAFP PF05264.6 gi|116754331|ref|YP_843449.1| - 3.4e-05 23.6 0.0 16 5.2 0.0 4.5 1 1 5 6 6 6 2 Choristoneura fumiferana antifreeze protein (CfAFP) TFIIS_C PF01096.13 gi|116754333|ref|YP_843451.1| - 2.8e-18 65.2 7.6 2.9e-18 65.2 2.1 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|116754333|ref|YP_843451.1| - 0.0003 20.0 4.0 0.0041 16.3 0.9 2.9 2 1 0 2 2 2 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|116754333|ref|YP_843451.1| - 0.00032 20.4 7.2 0.00072 19.3 1.5 2.5 2 1 0 2 2 2 1 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|116754333|ref|YP_843451.1| - 0.001 19.0 1.9 1.1 9.3 0.0 3.2 3 0 0 3 3 3 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.7 gi|116754333|ref|YP_843451.1| - 0.0011 18.7 0.3 0.024 14.3 0.0 2.4 2 1 0 2 2 2 1 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.1 gi|116754333|ref|YP_843451.1| - 0.0011 18.5 7.3 0.059 13.0 0.3 3.1 3 0 0 3 3 3 1 zinc-ribbon domain DUF2387 PF09526.5 gi|116754333|ref|YP_843451.1| - 0.0014 18.5 1.1 0.0069 16.2 0.2 2.1 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) DUF3797 PF12677.2 gi|116754333|ref|YP_843451.1| - 0.0014 18.1 2.6 0.18 11.4 0.0 3.0 3 0 0 3 3 3 1 Domain of unknown function (DUF3797) zinc_ribbon_5 PF13719.1 gi|116754333|ref|YP_843451.1| - 0.0023 17.4 7.7 0.055 13.0 0.2 3.0 3 0 0 3 3 3 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|116754333|ref|YP_843451.1| - 0.0031 16.9 9.2 1.8 8.1 0.7 3.2 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.2 gi|116754333|ref|YP_843451.1| - 0.0077 16.0 5.7 0.42 10.4 3.9 2.3 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|116754333|ref|YP_843451.1| - 0.013 14.6 7.5 0.94 8.7 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|116754333|ref|YP_843451.1| - 0.015 14.7 7.1 0.87 9.1 0.1 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|116754333|ref|YP_843451.1| - 0.016 14.8 1.0 0.016 14.8 0.7 2.3 1 1 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|116754333|ref|YP_843451.1| - 0.025 14.5 8.9 1.6 8.7 0.1 3.2 3 0 0 3 3 3 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|116754333|ref|YP_843451.1| - 0.027 14.7 3.0 0.1 12.8 0.5 2.2 1 1 0 2 2 2 0 Restriction alleviation protein Lar zf-BED PF02892.10 gi|116754333|ref|YP_843451.1| - 0.035 13.8 1.1 42 4.0 0.1 3.1 3 0 0 3 3 3 0 BED zinc finger PolC_DP2 PF03833.8 gi|116754333|ref|YP_843451.1| - 0.058 11.0 0.8 0.055 11.1 0.6 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Nudix_N_2 PF14803.1 gi|116754333|ref|YP_843451.1| - 0.062 12.9 5.0 6.7 6.4 1.0 3.4 2 1 1 3 3 3 0 Nudix N-terminal Zn_ribbon_recom PF13408.1 gi|116754333|ref|YP_843451.1| - 0.067 13.4 1.0 37 4.6 0.0 3.0 3 0 0 3 3 3 0 Recombinase zinc beta ribbon domain Terminase_GpA PF05876.7 gi|116754333|ref|YP_843451.1| - 0.082 11.2 0.2 0.083 11.2 0.2 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-DNA_Pol PF08996.5 gi|116754333|ref|YP_843451.1| - 0.11 11.8 1.0 0.15 11.4 0.1 1.6 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger Baculo_LEF5_C PF11792.3 gi|116754333|ref|YP_843451.1| - 0.11 11.9 0.2 0.11 11.9 0.1 2.5 3 0 0 3 3 2 0 Baculoviridae late expression factor 5 C-terminal domain Ogr_Delta PF04606.7 gi|116754333|ref|YP_843451.1| - 0.11 12.1 4.4 0.15 11.7 0.7 2.3 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger UPF0547 PF10571.4 gi|116754333|ref|YP_843451.1| - 0.14 11.8 3.7 0.98 9.1 0.0 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 DUF2296 PF10058.4 gi|116754333|ref|YP_843451.1| - 0.14 11.8 2.2 13 5.5 0.0 3.1 3 0 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) C1_4 PF07975.7 gi|116754333|ref|YP_843451.1| - 0.17 11.8 2.2 8.2 6.5 0.0 2.5 2 1 0 2 2 2 0 TFIIH C1-like domain DUF2082 PF09855.4 gi|116754333|ref|YP_843451.1| - 0.17 11.7 3.3 13 5.7 0.1 3.0 3 0 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Prok-RING_1 PF14446.1 gi|116754333|ref|YP_843451.1| - 0.23 11.2 3.9 13 5.6 0.1 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 DiS_P_DiS PF06750.8 gi|116754333|ref|YP_843451.1| - 0.27 11.0 2.3 8 6.3 0.1 2.8 2 1 1 3 3 3 0 Bacterial Peptidase A24 N-terminal domain Ribosomal_S27e PF01667.12 gi|116754333|ref|YP_843451.1| - 0.27 10.8 3.8 2.8 7.5 0.1 2.8 3 0 0 3 3 3 0 Ribosomal protein S27 HypA PF01155.14 gi|116754333|ref|YP_843451.1| - 0.28 10.8 4.3 1.1 8.9 0.4 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF164 PF02591.10 gi|116754333|ref|YP_843451.1| - 0.28 11.0 2.0 21 5.0 0.1 3.0 3 0 0 3 3 3 0 Putative zinc ribbon domain Mcm10 PF09332.6 gi|116754333|ref|YP_843451.1| - 0.4 9.9 2.4 0.34 10.2 0.2 1.8 2 0 0 2 2 2 0 Mcm10 replication factor zf-C2H2 PF00096.21 gi|116754333|ref|YP_843451.1| - 0.4 11.1 7.2 10 6.7 0.1 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type RNA_POL_M_15KD PF02150.11 gi|116754333|ref|YP_843451.1| - 0.57 9.9 9.3 12 5.6 0.0 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-TFIIB PF13453.1 gi|116754333|ref|YP_843451.1| - 0.84 8.8 9.3 0.085 12.0 2.4 2.2 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-C2H2_3 PF13878.1 gi|116754333|ref|YP_843451.1| - 1.1 8.9 6.8 9.9 5.8 0.4 3.0 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO zf-H2C2_2 PF13465.1 gi|116754333|ref|YP_843451.1| - 1.2 9.5 5.9 17 5.9 0.1 2.9 3 0 0 3 3 3 0 Zinc-finger double domain Desulfoferrod_N PF06397.7 gi|116754333|ref|YP_843451.1| - 1.2 8.5 0.1 1.2 8.5 0.0 3.1 4 0 0 4 4 3 0 Desulfoferrodoxin, N-terminal domain DUF35_N PF12172.3 gi|116754333|ref|YP_843451.1| - 1.2 9.0 6.0 31 4.6 0.1 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) YhfH PF14149.1 gi|116754333|ref|YP_843451.1| - 2.5 7.9 10.6 5.7 6.8 0.2 3.3 3 1 0 3 3 3 0 YhfH-like protein A2L_zn_ribbon PF08792.5 gi|116754333|ref|YP_843451.1| - 2.5 7.6 7.8 33 4.0 0.2 3.1 3 0 0 3 3 3 0 A2L zinc ribbon domain Nop10p PF04135.7 gi|116754333|ref|YP_843451.1| - 2.6 7.8 4.6 0.99 9.1 0.1 2.3 3 0 0 3 3 2 0 Nucleolar RNA-binding protein, Nop10p family zf-AN1 PF01428.11 gi|116754333|ref|YP_843451.1| - 2.8 7.8 5.5 33 4.4 0.1 3.0 3 0 0 3 3 3 0 AN1-like Zinc finger ADK_lid PF05191.9 gi|116754333|ref|YP_843451.1| - 3.5 7.3 6.2 53 3.6 0.1 3.1 3 0 0 3 3 3 0 Adenylate kinase, active site lid zf-tcix PF14952.1 gi|116754333|ref|YP_843451.1| - 4.1 6.8 8.2 5.6 6.3 0.4 3.0 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-C4_Topoisom PF01396.14 gi|116754333|ref|YP_843451.1| - 4.2 6.9 7.4 0.7 9.4 0.2 2.7 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger RRN7 PF11781.3 gi|116754333|ref|YP_843451.1| - 4.5 6.8 9.1 8.8 5.9 0.1 3.0 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 NOB1_Zn_bind PF08772.6 gi|116754333|ref|YP_843451.1| - 5.9 6.7 9.2 1.7 8.5 0.2 2.9 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS91 PF14319.1 gi|116754333|ref|YP_843451.1| - 8 6.0 6.3 1.9 8.0 0.4 2.4 2 1 1 3 3 3 0 Transposase zinc-binding domain zf-HIT PF04438.11 gi|116754333|ref|YP_843451.1| - 9.4 5.9 9.6 33 4.2 0.3 3.1 3 0 0 3 3 3 0 HIT zinc finger PCNA_C PF02747.10 gi|116754334|ref|YP_843452.1| - 1.2e-13 51.0 0.0 1.1e-11 44.6 0.0 3.2 2 2 1 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.13 gi|116754334|ref|YP_843452.1| - 1.6e-12 47.0 0.2 1e-11 44.4 0.0 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.8 gi|116754334|ref|YP_843452.1| - 4.9e-05 22.5 0.0 0.00062 18.9 0.0 2.0 2 0 0 2 2 2 1 Rad9 DNA_primase_lrg PF04104.9 gi|116754335|ref|YP_843453.1| - 1.5e-35 122.7 0.0 3.2e-35 121.6 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit EPSP_synthase PF00275.15 gi|116754336|ref|YP_843454.1| - 7.8e-107 357.2 0.0 9.3e-107 357.0 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Leucyl-specific PF14795.1 gi|116754336|ref|YP_843454.1| - 0.00095 18.9 2.0 1.6 8.6 0.1 4.2 4 1 1 5 5 5 2 Leucine-tRNA synthetase-specific domain CARDB PF07705.6 gi|116754337|ref|YP_843455.1| - 0.0024 17.8 0.0 2.2 8.3 0.0 3.0 3 0 0 3 3 3 2 CARDB DUF11 PF01345.13 gi|116754337|ref|YP_843455.1| - 0.0032 17.4 0.0 1.2 9.2 0.0 2.9 3 0 0 3 3 3 2 Domain of unknown function DUF11 A2M_N PF01835.14 gi|116754337|ref|YP_843455.1| - 0.022 15.0 0.0 0.27 11.4 0.0 2.7 3 1 1 4 4 4 0 MG2 domain DUF925 PF06042.6 gi|116754337|ref|YP_843455.1| - 0.17 11.4 0.0 0.27 10.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF925) DUF2189 PF09955.4 gi|116754338|ref|YP_843456.1| - 0.061 13.2 1.0 0.078 12.9 0.7 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2189) BatA PF07584.6 gi|116754338|ref|YP_843456.1| - 0.25 11.5 3.9 1.7 8.9 1.0 2.6 2 1 0 2 2 2 0 Aerotolerance regulator N-terminal ABC_tran PF00005.22 gi|116754339|ref|YP_843457.1| - 1.8e-32 112.5 0.0 2.3e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116754339|ref|YP_843457.1| - 1.1e-14 55.0 0.7 3.7e-09 36.9 0.0 2.4 1 1 2 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|116754339|ref|YP_843457.1| - 1.2e-05 25.6 0.0 0.00066 19.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|116754339|ref|YP_843457.1| - 4.2e-05 23.7 0.0 0.00066 19.8 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|116754339|ref|YP_843457.1| - 7.4e-05 23.5 0.0 0.00011 22.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|116754339|ref|YP_843457.1| - 0.00015 21.9 0.4 0.0021 18.2 0.3 2.1 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|116754339|ref|YP_843457.1| - 0.00019 20.6 0.0 0.00032 19.9 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|116754339|ref|YP_843457.1| - 0.00027 20.4 0.0 0.046 13.1 0.1 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|116754339|ref|YP_843457.1| - 0.0003 19.9 0.0 0.00063 18.8 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|116754339|ref|YP_843457.1| - 0.00047 19.4 0.0 0.0081 15.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|116754339|ref|YP_843457.1| - 0.00052 18.6 0.0 0.022 13.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|116754339|ref|YP_843457.1| - 0.00096 19.1 0.6 0.0027 17.7 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|116754339|ref|YP_843457.1| - 0.0017 18.2 0.0 0.0028 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|116754339|ref|YP_843457.1| - 0.0055 16.2 0.1 0.0096 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.1 gi|116754339|ref|YP_843457.1| - 0.0083 16.1 0.0 0.25 11.4 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain SbcCD_C PF13558.1 gi|116754339|ref|YP_843457.1| - 0.0091 15.8 0.1 0.044 13.6 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|116754339|ref|YP_843457.1| - 0.012 15.3 0.1 0.24 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|116754339|ref|YP_843457.1| - 0.031 13.6 0.1 0.27 10.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|116754339|ref|YP_843457.1| - 0.044 12.9 0.0 0.065 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|116754339|ref|YP_843457.1| - 0.061 13.2 0.1 0.14 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|116754339|ref|YP_843457.1| - 0.066 12.7 0.0 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|116754339|ref|YP_843457.1| - 0.07 12.5 0.0 0.3 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|116754339|ref|YP_843457.1| - 0.085 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_24 PF13479.1 gi|116754339|ref|YP_843457.1| - 0.089 12.3 0.0 0.29 10.6 0.0 1.8 3 0 0 3 3 2 0 AAA domain Sigma54_activat PF00158.21 gi|116754339|ref|YP_843457.1| - 0.099 12.1 0.0 5.1 6.5 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_19 PF13245.1 gi|116754339|ref|YP_843457.1| - 0.1 12.3 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|116754339|ref|YP_843457.1| - 0.11 12.8 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|116754340|ref|YP_843458.1| - 1.1e-20 74.3 0.0 1.4e-20 73.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|116754340|ref|YP_843458.1| - 1.2e-17 63.9 1.2 2.5e-17 62.9 0.8 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|116754340|ref|YP_843458.1| - 1.6e-09 38.1 0.1 5e-07 29.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|116754340|ref|YP_843458.1| - 0.00014 21.1 0.1 0.00058 19.1 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|116754340|ref|YP_843458.1| - 0.00047 20.3 0.0 0.0016 18.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|116754340|ref|YP_843458.1| - 0.0011 18.9 0.1 0.0014 18.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|116754340|ref|YP_843458.1| - 0.0047 15.8 0.0 0.0089 14.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|116754340|ref|YP_843458.1| - 0.0056 16.1 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|116754340|ref|YP_843458.1| - 0.0076 15.4 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|116754340|ref|YP_843458.1| - 0.0085 15.8 0.0 0.018 14.7 0.0 1.7 1 1 0 1 1 1 1 Part of AAA domain DUF87 PF01935.12 gi|116754340|ref|YP_843458.1| - 0.011 15.5 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|116754340|ref|YP_843458.1| - 0.015 14.8 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Sigma54_activat PF00158.21 gi|116754340|ref|YP_843458.1| - 0.015 14.7 0.0 0.027 13.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF2075 PF09848.4 gi|116754340|ref|YP_843458.1| - 0.026 13.4 0.0 0.033 13.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|116754340|ref|YP_843458.1| - 0.027 13.8 0.0 0.051 12.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|116754340|ref|YP_843458.1| - 0.029 13.2 0.0 0.047 12.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.1 gi|116754340|ref|YP_843458.1| - 0.03 14.6 0.0 0.043 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|116754340|ref|YP_843458.1| - 0.033 13.6 0.0 0.033 13.6 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|116754340|ref|YP_843458.1| - 0.035 13.8 0.0 0.07 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|116754340|ref|YP_843458.1| - 0.045 12.9 0.0 0.066 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|116754340|ref|YP_843458.1| - 0.074 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AIG1 PF04548.11 gi|116754340|ref|YP_843458.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 AIG1 family AAA_10 PF12846.2 gi|116754340|ref|YP_843458.1| - 0.12 11.8 0.1 0.21 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|116754340|ref|YP_843458.1| - 0.15 11.7 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|116754340|ref|YP_843458.1| - 0.15 12.2 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.17 gi|116754341|ref|YP_843459.1| - 7.7e-23 80.9 14.2 7.7e-23 80.9 9.8 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|116754341|ref|YP_843459.1| - 0.00037 19.8 1.7 0.00042 19.6 0.0 2.0 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|116754342|ref|YP_843460.1| - 6.8e-37 126.7 14.3 1.1e-36 126.0 9.9 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Methyltransf_18 PF12847.2 gi|116754343|ref|YP_843461.1| - 1.1e-11 45.2 0.1 6.4e-11 42.8 0.0 2.1 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116754343|ref|YP_843461.1| - 4.1e-07 29.7 0.0 5.6e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|116754343|ref|YP_843461.1| - 1.2e-05 25.6 0.0 2.8e-05 24.5 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116754343|ref|YP_843461.1| - 5.5e-05 22.9 0.0 8.3e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|116754343|ref|YP_843461.1| - 0.00015 20.9 0.0 0.00024 20.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|116754343|ref|YP_843461.1| - 0.00023 21.6 0.0 0.00041 20.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754343|ref|YP_843461.1| - 0.00052 20.3 0.0 0.0011 19.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|116754343|ref|YP_843461.1| - 0.0011 18.6 0.0 0.0026 17.3 0.0 1.6 2 0 0 2 2 2 1 Met-10+ like-protein FtsJ PF01728.14 gi|116754343|ref|YP_843461.1| - 0.0087 16.0 0.0 0.017 15.1 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_26 PF13659.1 gi|116754343|ref|YP_843461.1| - 0.009 16.0 0.0 0.023 14.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|116754343|ref|YP_843461.1| - 0.023 14.0 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|116754343|ref|YP_843461.1| - 0.044 12.9 0.0 0.063 12.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) GidB PF02527.10 gi|116754343|ref|YP_843461.1| - 0.047 12.8 0.0 0.066 12.3 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Cons_hypoth95 PF03602.10 gi|116754343|ref|YP_843461.1| - 0.077 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PS_pyruv_trans PF04230.8 gi|116754343|ref|YP_843461.1| - 0.1 12.3 0.2 0.29 10.7 0.0 1.7 2 0 0 2 2 2 0 Polysaccharide pyruvyl transferase Ubie_methyltran PF01209.13 gi|116754343|ref|YP_843461.1| - 0.1 11.7 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|116754343|ref|YP_843461.1| - 0.15 11.5 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SBP_bac_5 PF00496.17 gi|116754344|ref|YP_843462.1| - 9.1e-74 248.5 3.0 1.2e-73 248.1 2.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4277 PF14104.1 gi|116754345|ref|YP_843463.1| - 1.1e-43 148.1 0.0 2.4e-43 146.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|116754345|ref|YP_843463.1| - 3.5e-11 43.0 0.8 2e-10 40.6 0.6 2.0 1 1 0 1 1 1 1 Transposase DDE domain Peptidase_S9 PF00326.16 gi|116754346|ref|YP_843464.1| - 4.7e-17 61.9 0.0 6.6e-08 32.0 0.0 2.3 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|116754346|ref|YP_843464.1| - 1.7e-16 60.3 0.0 6.1e-16 58.4 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|116754346|ref|YP_843464.1| - 6.3e-16 58.9 0.0 9e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family BAAT_C PF08840.6 gi|116754346|ref|YP_843464.1| - 1.4e-05 24.9 0.0 0.08 12.6 0.0 2.1 2 0 0 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.13 gi|116754346|ref|YP_843464.1| - 5.3e-05 22.5 0.0 0.00051 19.3 0.0 2.2 2 1 0 2 2 2 1 Dienelactone hydrolase family Hydrolase_4 PF12146.3 gi|116754346|ref|YP_843464.1| - 0.0001 22.1 0.0 0.00044 20.0 0.0 2.0 2 0 0 2 2 2 1 Putative lysophospholipase Abhydrolase_3 PF07859.8 gi|116754346|ref|YP_843464.1| - 0.00036 20.1 0.2 0.0068 16.0 0.1 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold AXE1 PF05448.7 gi|116754346|ref|YP_843464.1| - 0.00049 18.6 0.0 0.0034 15.9 0.1 2.3 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) Peptidase_S15 PF02129.13 gi|116754346|ref|YP_843464.1| - 0.0022 17.4 0.0 0.023 14.1 0.0 2.0 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.15 gi|116754346|ref|YP_843464.1| - 0.015 14.8 0.1 1.1 8.7 0.1 2.2 1 1 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|116754346|ref|YP_843464.1| - 0.018 14.5 0.0 0.04 13.3 0.0 1.5 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase FecCD PF01032.13 gi|116754347|ref|YP_843465.1| - 4.4e-91 304.9 33.3 5.3e-91 304.6 23.1 1.0 1 0 0 1 1 1 1 FecCD transport family IspA PF04279.10 gi|116754347|ref|YP_843465.1| - 0.19 11.6 13.2 0.097 12.6 3.9 2.6 2 1 1 3 3 3 0 Intracellular septation protein A ABC2_membrane_3 PF12698.2 gi|116754347|ref|YP_843465.1| - 3.5 6.5 28.7 4 6.3 5.2 2.3 2 0 0 2 2 2 0 ABC-2 family transporter protein Peripla_BP_2 PF01497.13 gi|116754348|ref|YP_843466.1| - 8.2e-48 162.5 0.0 1.1e-47 162.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein APS_kinase PF01583.15 gi|116754349|ref|YP_843467.1| - 7.2e-33 113.4 0.0 9.1e-33 113.1 0.0 1.1 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|116754349|ref|YP_843467.1| - 4.3e-16 59.0 0.0 7.3e-16 58.3 0.0 1.4 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|116754349|ref|YP_843467.1| - 1.7e-10 41.7 0.1 2.5e-10 41.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|116754349|ref|YP_843467.1| - 8.7e-10 39.0 0.1 1.2e-09 38.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|116754349|ref|YP_843467.1| - 2.9e-09 36.5 0.0 3.4e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 CPT PF07931.7 gi|116754349|ref|YP_843467.1| - 2.6e-06 27.1 0.1 1.5e-05 24.7 0.1 2.1 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.7 gi|116754349|ref|YP_843467.1| - 4.7e-06 25.8 0.1 4.9e-05 22.5 0.0 2.5 1 1 1 2 2 2 1 Zeta toxin AAA PF00004.24 gi|116754349|ref|YP_843467.1| - 4.4e-05 23.7 1.4 0.0084 16.3 0.2 2.2 1 1 1 2 2 2 2 ATPase family associated with various cellular activities (AAA) 6PF2K PF01591.13 gi|116754349|ref|YP_843467.1| - 0.00022 20.3 0.2 0.0018 17.4 0.2 2.0 1 1 0 1 1 1 1 6-phosphofructo-2-kinase ArgK PF03308.11 gi|116754349|ref|YP_843467.1| - 0.0004 19.2 0.0 0.00068 18.4 0.0 1.4 1 0 0 1 1 1 1 ArgK protein NTPase_1 PF03266.10 gi|116754349|ref|YP_843467.1| - 0.0014 18.3 0.1 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 NTPase PRK PF00485.13 gi|116754349|ref|YP_843467.1| - 0.0038 16.8 0.0 0.0072 15.9 0.0 1.4 1 1 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.1 gi|116754349|ref|YP_843467.1| - 0.0042 16.9 0.1 0.017 15.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|116754349|ref|YP_843467.1| - 0.0057 16.6 0.5 0.05 13.5 0.1 2.3 2 1 1 3 3 2 1 AAA domain RNA_helicase PF00910.17 gi|116754349|ref|YP_843467.1| - 0.0078 16.3 0.0 0.023 14.8 0.0 1.8 1 1 0 1 1 1 1 RNA helicase Mg_chelatase PF01078.16 gi|116754349|ref|YP_843467.1| - 0.011 14.8 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.12 gi|116754349|ref|YP_843467.1| - 0.013 15.0 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|116754349|ref|YP_843467.1| - 0.013 15.1 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|116754349|ref|YP_843467.1| - 0.015 15.3 0.1 0.028 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|116754349|ref|YP_843467.1| - 0.016 15.3 0.1 0.054 13.6 0.1 1.9 1 1 1 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|116754349|ref|YP_843467.1| - 0.02 14.5 0.2 0.14 11.9 0.0 2.1 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.12 gi|116754349|ref|YP_843467.1| - 0.031 13.6 0.1 0.11 11.8 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase AAA_19 PF13245.1 gi|116754349|ref|YP_843467.1| - 0.037 13.7 0.3 0.099 12.4 0.2 1.9 1 1 0 1 1 1 0 Part of AAA domain SKI PF01202.17 gi|116754349|ref|YP_843467.1| - 0.042 13.7 0.5 0.31 10.9 0.4 2.1 1 1 0 1 1 1 0 Shikimate kinase Viral_helicase1 PF01443.13 gi|116754349|ref|YP_843467.1| - 0.043 13.3 0.0 0.062 12.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SRP54 PF00448.17 gi|116754349|ref|YP_843467.1| - 0.064 12.6 0.0 0.17 11.3 0.0 1.6 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|116754349|ref|YP_843467.1| - 0.14 11.7 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain HTH_23 PF13384.1 gi|116754350|ref|YP_843468.1| - 1.7e-09 37.0 0.0 0.00018 21.0 0.0 3.1 2 1 0 2 2 2 2 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|116754350|ref|YP_843468.1| - 2.6e-08 33.2 0.1 0.0064 15.9 0.0 2.6 2 0 0 2 2 2 2 Sigma-70, region 4 GerE PF00196.14 gi|116754350|ref|YP_843468.1| - 1.1e-07 31.0 0.0 0.0037 16.5 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|116754350|ref|YP_843468.1| - 5.6e-05 22.5 0.0 0.0061 16.0 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|116754350|ref|YP_843468.1| - 7.6e-05 21.9 0.1 0.095 12.0 0.0 3.2 3 1 0 3 3 3 2 Sigma-70, region 4 HTH_28 PF13518.1 gi|116754350|ref|YP_843468.1| - 0.00025 20.9 0.1 0.0062 16.5 0.0 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain CENP-B_N PF04218.8 gi|116754350|ref|YP_843468.1| - 0.0013 18.0 0.0 0.035 13.5 0.0 2.4 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain HTH_40 PF14493.1 gi|116754350|ref|YP_843468.1| - 0.0019 18.3 0.1 0.092 12.9 0.0 2.7 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|116754350|ref|YP_843468.1| - 0.0036 17.1 0.2 0.33 10.8 0.0 3.2 3 0 0 3 3 3 1 Helix-turn-helix HTH_29 PF13551.1 gi|116754350|ref|YP_843468.1| - 0.0041 17.2 0.1 1.2 9.3 0.0 2.7 2 1 1 3 3 3 1 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|116754350|ref|YP_843468.1| - 0.006 16.4 0.2 0.13 12.1 0.0 3.0 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain Terminase_5 PF06056.7 gi|116754350|ref|YP_843468.1| - 0.012 15.1 0.0 2.1 7.9 0.0 2.4 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) NUMOD1 PF07453.8 gi|116754350|ref|YP_843468.1| - 0.022 14.5 0.0 22 5.0 0.0 3.3 2 1 1 3 3 3 0 NUMOD1 domain Sigma70_ECF PF07638.6 gi|116754350|ref|YP_843468.1| - 0.027 14.1 0.1 0.54 9.9 0.0 2.2 1 1 1 2 2 2 0 ECF sigma factor HTH_24 PF13412.1 gi|116754350|ref|YP_843468.1| - 0.03 13.6 0.0 2.1 7.7 0.0 2.9 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding GcrA PF07750.6 gi|116754350|ref|YP_843468.1| - 0.045 13.9 0.0 0.41 10.8 0.0 2.2 2 0 0 2 2 2 0 GcrA cell cycle regulator HTH_7 PF02796.10 gi|116754350|ref|YP_843468.1| - 0.051 13.4 0.0 13 5.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Pyridox_oxidase PF01243.15 gi|116754351|ref|YP_843469.1| - 3.7e-14 52.5 0.0 4.6e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.2 gi|116754351|ref|YP_843469.1| - 0.024 14.9 0.0 0.033 14.5 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase MutS_V PF00488.16 gi|116754352|ref|YP_843470.1| - 2.4e-14 53.3 0.0 4.8e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain V AAA_10 PF12846.2 gi|116754352|ref|YP_843470.1| - 0.0018 17.8 5.2 0.36 10.2 0.0 3.3 2 2 0 3 3 3 2 AAA-like domain AAA PF00004.24 gi|116754352|ref|YP_843470.1| - 0.013 15.7 0.6 0.047 13.8 0.0 2.3 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.1 gi|116754352|ref|YP_843470.1| - 0.11 12.3 0.4 18 5.1 0.0 2.5 1 1 1 2 2 2 0 AAA domain ADH_zinc_N PF00107.21 gi|116754352|ref|YP_843470.1| - 0.13 11.8 0.0 0.35 10.4 0.0 1.7 1 0 0 1 1 1 0 Zinc-binding dehydrogenase FtsZ_C PF12327.3 gi|116754353|ref|YP_843471.1| - 8e-13 48.2 0.1 2.2e-12 46.8 0.0 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain DUF3834 PF12916.2 gi|116754353|ref|YP_843471.1| - 0.018 14.0 0.0 0.026 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) tRNA-synt_1b PF00579.20 gi|116754354|ref|YP_843472.1| - 4.2e-51 173.7 0.0 5.2e-51 173.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|116754354|ref|YP_843472.1| - 0.00046 18.9 0.0 0.018 13.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) Oxidored_q4 PF00507.14 gi|116754356|ref|YP_843474.1| - 2.3e-23 81.9 12.6 2.8e-23 81.6 4.8 2.7 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF3671 PF12420.3 gi|116754356|ref|YP_843474.1| - 2.1 8.3 7.5 22 5.0 5.2 2.0 1 1 0 1 1 1 0 Protein of unknown function Oxidored_q6 PF01058.17 gi|116754357|ref|YP_843475.1| - 8.4e-21 73.9 0.0 1.6e-20 73.0 0.0 1.5 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RE_NgoFVII PF09565.5 gi|116754357|ref|YP_843475.1| - 0.024 13.6 0.0 0.032 13.1 0.0 1.2 1 0 0 1 1 1 0 NgoFVII restriction endonuclease Complex1_49kDa PF00346.14 gi|116754358|ref|YP_843476.1| - 2.8e-62 210.2 0.0 3.7e-40 137.6 0.0 2.5 2 1 1 3 3 3 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|116754358|ref|YP_843476.1| - 1.5e-07 30.5 0.0 2.2e-06 26.7 0.0 2.5 3 0 0 3 3 3 1 Nickel-dependent hydrogenase NADHdh PF00146.16 gi|116754359|ref|YP_843477.1| - 7.4e-88 294.5 13.9 9.1e-88 294.3 9.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|116754360|ref|YP_843478.1| - 5.7e-14 51.0 18.0 2.8e-07 29.8 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116754360|ref|YP_843478.1| - 1.4e-11 44.6 12.1 3.1e-11 43.4 8.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754360|ref|YP_843478.1| - 7.1e-11 41.3 12.0 9.2e-06 25.2 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|116754360|ref|YP_843478.1| - 5.6e-10 38.8 12.4 8e-10 38.3 8.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|116754360|ref|YP_843478.1| - 6.8e-10 38.6 26.9 8.9e-08 31.8 9.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754360|ref|YP_843478.1| - 1.4e-08 34.8 14.4 3.6e-08 33.5 10.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116754360|ref|YP_843478.1| - 1.8e-07 31.0 13.2 4.5e-07 29.7 9.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|116754360|ref|YP_843478.1| - 3e-07 30.0 17.2 0.00081 19.1 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|116754360|ref|YP_843478.1| - 8.4e-07 29.6 15.8 0.0025 18.5 1.3 2.8 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|116754360|ref|YP_843478.1| - 1.2e-05 25.1 17.8 0.0023 18.1 3.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|116754360|ref|YP_843478.1| - 6.1e-05 23.2 15.0 0.0034 17.6 1.6 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116754360|ref|YP_843478.1| - 0.00087 19.8 19.7 0.0026 18.3 1.0 3.2 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|116754360|ref|YP_843478.1| - 0.0018 18.6 18.6 0.0038 17.6 2.2 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|116754360|ref|YP_843478.1| - 0.012 16.1 25.9 0.51 11.0 5.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|116754360|ref|YP_843478.1| - 0.094 12.6 5.2 0.19 11.5 3.6 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain APC_CDC26 PF10471.4 gi|116754360|ref|YP_843478.1| - 0.32 11.7 2.3 0.48 11.1 1.6 1.2 1 0 0 1 1 1 0 Anaphase-promoting complex APC subunit 1 Fer4_13 PF13370.1 gi|116754360|ref|YP_843478.1| - 1.1 9.6 21.7 0.12 12.7 3.4 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain HSP90 PF00183.13 gi|116754360|ref|YP_843478.1| - 2 6.6 6.3 2.6 6.3 4.4 1.0 1 0 0 1 1 1 0 Hsp90 protein C1_1 PF00130.17 gi|116754360|ref|YP_843478.1| - 2.1 8.1 7.6 4.8 6.9 0.5 2.2 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Oxidored_q3 PF00499.15 gi|116754361|ref|YP_843479.1| - 5.4e-16 58.6 8.9 6.3e-16 58.4 6.2 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|116754361|ref|YP_843479.1| - 0.00038 20.3 12.4 0.0005 19.9 8.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF676 PF05057.9 gi|116754361|ref|YP_843479.1| - 0.12 11.6 0.3 0.13 11.5 0.2 1.1 1 0 0 1 1 1 0 Putative serine esterase (DUF676) DUF4083 PF13314.1 gi|116754361|ref|YP_843479.1| - 3.8 7.4 7.4 4.8 7.0 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) Oxidored_q3 PF00499.15 gi|116754362|ref|YP_843480.1| - 0.00044 20.0 3.5 0.00095 18.9 2.5 1.5 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF3309 PF11752.3 gi|116754362|ref|YP_843480.1| - 0.11 12.3 0.3 0.11 12.3 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3309) Oxidored_q2 PF00420.19 gi|116754363|ref|YP_843481.1| - 2.4e-26 91.1 4.9 2.6e-26 91.0 3.4 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CbiQ PF02361.11 gi|116754363|ref|YP_843481.1| - 0.32 10.5 2.0 0.36 10.3 1.4 1.0 1 0 0 1 1 1 0 Cobalt transport protein YiaAB PF05360.9 gi|116754363|ref|YP_843481.1| - 5.7 6.5 6.3 0.87 9.1 0.5 2.3 2 1 0 2 2 2 0 yiaA/B two helix domain Oxidored_q1 PF00361.15 gi|116754364|ref|YP_843482.1| - 6.6e-78 261.6 11.9 6.6e-78 261.6 8.3 2.1 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|116754364|ref|YP_843482.1| - 1.8e-12 46.6 2.5 2.5e-12 46.1 0.1 2.5 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|116754364|ref|YP_843482.1| - 8.6e-06 25.4 0.1 2.5e-05 23.9 0.1 1.7 1 1 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus NADH5_C PF06455.6 gi|116754364|ref|YP_843482.1| - 0.0038 16.6 0.0 0.0038 16.6 0.0 4.7 4 2 0 4 4 4 2 NADH dehydrogenase subunit 5 C-terminus Oxidored_q1 PF00361.15 gi|116754365|ref|YP_843483.1| - 1.1e-70 237.9 22.3 2.5e-70 236.8 15.4 1.6 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|116754365|ref|YP_843483.1| - 0.025 14.4 0.5 0.025 14.4 0.3 3.9 4 2 1 5 5 5 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1_N PF00662.15 gi|116754365|ref|YP_843483.1| - 0.061 12.8 0.2 0.061 12.8 0.2 3.4 3 0 0 3 3 3 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|116754366|ref|YP_843484.1| - 1.5e-61 208.0 18.7 1.5e-61 208.0 13.0 2.4 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains RAMP4 PF06624.7 gi|116754366|ref|YP_843484.1| - 7.7 6.1 7.2 5.3 6.6 0.2 3.1 3 0 0 3 3 3 0 Ribosome associated membrane protein RAMP4 Fe-S_biosyn PF01521.15 gi|116754367|ref|YP_843485.1| - 1.1e-05 25.3 0.0 1.6e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Epimerase PF01370.16 gi|116754368|ref|YP_843486.1| - 9.2e-39 133.2 0.0 1.2e-38 132.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|116754368|ref|YP_843486.1| - 4.5e-09 35.4 0.1 2.5e-08 32.9 0.0 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|116754368|ref|YP_843486.1| - 1.9e-08 33.5 0.0 0.0034 16.3 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.12 gi|116754368|ref|YP_843486.1| - 1.5e-06 27.2 0.2 0.015 14.2 0.0 2.0 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|116754368|ref|YP_843486.1| - 1.3e-05 25.2 0.0 2e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|116754368|ref|YP_843486.1| - 4.9e-05 23.3 0.1 0.00012 22.0 0.0 1.6 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|116754368|ref|YP_843486.1| - 0.0013 18.4 0.1 0.0057 16.3 0.0 2.0 2 0 0 2 2 2 1 KR domain NmrA PF05368.8 gi|116754368|ref|YP_843486.1| - 0.024 13.9 0.0 0.72 9.0 0.0 2.1 2 0 0 2 2 2 0 NmrA-like family Polysacc_synt_2 PF02719.10 gi|116754368|ref|YP_843486.1| - 0.099 11.5 0.1 0.2 10.5 0.0 1.5 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein Epimerase PF01370.16 gi|116754369|ref|YP_843487.1| - 8e-51 172.7 0.0 2.1e-50 171.3 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|116754369|ref|YP_843487.1| - 2.1e-10 39.7 0.0 2.1e-09 36.5 0.0 2.0 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|116754369|ref|YP_843487.1| - 4.6e-10 38.8 0.0 7e-10 38.2 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|116754369|ref|YP_843487.1| - 1.6e-09 37.1 0.0 2.4e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|116754369|ref|YP_843487.1| - 1.4e-08 34.0 0.0 5.8e-07 28.6 0.0 2.2 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|116754369|ref|YP_843487.1| - 5.8e-07 29.6 0.0 8.5e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|116754369|ref|YP_843487.1| - 6.6e-07 29.4 0.0 2.2e-06 27.6 0.0 1.9 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|116754369|ref|YP_843487.1| - 0.00032 20.4 0.0 0.00061 19.5 0.0 1.4 1 0 0 1 1 1 1 KR domain NmrA PF05368.8 gi|116754369|ref|YP_843487.1| - 0.00051 19.3 0.0 0.00093 18.5 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family Glycos_transf_1 PF00534.15 gi|116754370|ref|YP_843488.1| - 4.8e-30 104.2 0.0 7.3e-30 103.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|116754370|ref|YP_843488.1| - 1.6e-16 60.7 0.0 3.2e-16 59.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|116754370|ref|YP_843488.1| - 2e-06 27.6 0.3 2e-05 24.4 0.1 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|116754370|ref|YP_843488.1| - 4.6e-06 26.8 0.3 1.1e-05 25.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Epimerase_2 PF02350.14 gi|116754370|ref|YP_843488.1| - 0.0037 16.0 0.0 0.0056 15.4 0.0 1.2 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.1 gi|116754370|ref|YP_843488.1| - 0.055 13.6 1.2 0.15 12.2 0.9 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_trans_1_3 PF13528.1 gi|116754370|ref|YP_843488.1| - 0.067 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 1 ABC2_membrane PF01061.19 gi|116754371|ref|YP_843489.1| - 1.8e-26 92.6 32.8 2.4e-26 92.2 22.8 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|116754371|ref|YP_843489.1| - 0.55 9.2 29.8 0.023 13.7 15.0 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein Wzt_C PF14524.1 gi|116754372|ref|YP_843490.1| - 3.8e-24 85.0 0.1 7.3e-24 84.0 0.1 1.5 1 0 0 1 1 1 1 Wzt C-terminal domain ABC_tran PF00005.22 gi|116754372|ref|YP_843490.1| - 7e-23 81.4 0.1 2.8e-22 79.4 0.0 2.0 2 1 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|116754372|ref|YP_843490.1| - 3.8e-14 53.3 0.7 7.3e-06 26.1 0.0 2.6 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|116754372|ref|YP_843490.1| - 6.1e-05 22.4 0.0 0.00014 21.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|116754372|ref|YP_843490.1| - 0.00065 19.4 0.3 1.1 8.9 0.1 2.5 2 0 0 2 2 2 2 NTPase AAA_15 PF13175.1 gi|116754372|ref|YP_843490.1| - 0.0024 17.0 0.5 0.021 13.9 0.4 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|116754372|ref|YP_843490.1| - 0.0029 17.9 0.1 0.0056 16.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|116754372|ref|YP_843490.1| - 0.0035 17.6 2.1 0.0055 17.0 1.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|116754372|ref|YP_843490.1| - 0.0055 17.5 0.4 0.011 16.5 0.3 1.8 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|116754372|ref|YP_843490.1| - 0.011 15.3 0.1 0.034 13.8 0.1 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|116754372|ref|YP_843490.1| - 0.014 15.4 0.1 0.031 14.2 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|116754372|ref|YP_843490.1| - 0.016 15.3 0.1 0.13 12.4 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|116754372|ref|YP_843490.1| - 0.019 13.7 0.0 0.029 13.1 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_10 PF12846.2 gi|116754372|ref|YP_843490.1| - 0.027 13.9 0.6 0.28 10.5 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain T2SE PF00437.15 gi|116754372|ref|YP_843490.1| - 0.032 13.1 0.1 0.6 8.9 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein NACHT PF05729.7 gi|116754372|ref|YP_843490.1| - 0.045 13.4 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|116754372|ref|YP_843490.1| - 0.055 13.9 1.4 0.13 12.7 0.1 2.0 2 0 0 2 2 2 0 Miro-like protein SMC_N PF02463.14 gi|116754372|ref|YP_843490.1| - 0.069 12.3 0.2 0.14 11.3 0.0 1.5 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|116754372|ref|YP_843490.1| - 0.07 13.2 0.1 0.2 11.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain Methyltransf_11 PF08241.7 gi|116754373|ref|YP_843491.1| - 7.5e-08 32.7 0.0 1.7e-07 31.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116754373|ref|YP_843491.1| - 0.00014 21.5 0.0 0.00021 21.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754373|ref|YP_843491.1| - 0.00055 20.2 0.0 0.0018 18.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116754373|ref|YP_843491.1| - 0.038 13.5 0.0 0.059 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116754374|ref|YP_843492.1| - 1.3e-18 67.1 0.0 2e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|116754374|ref|YP_843492.1| - 2.8e-18 66.1 0.0 4.6e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754374|ref|YP_843492.1| - 2.8e-15 56.5 0.0 5.5e-15 55.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116754374|ref|YP_843492.1| - 2.9e-14 53.6 0.0 4.8e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116754374|ref|YP_843492.1| - 8.3e-13 48.1 0.0 1.2e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|116754374|ref|YP_843492.1| - 6.3e-12 45.8 0.0 1e-11 45.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|116754374|ref|YP_843492.1| - 1.1e-10 41.5 0.2 2.1e-10 40.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|116754374|ref|YP_843492.1| - 1e-09 38.0 0.0 1.5e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|116754374|ref|YP_843492.1| - 3.8e-09 36.0 0.0 5.9e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|116754374|ref|YP_843492.1| - 2.3e-08 33.4 0.0 3.3e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|116754374|ref|YP_843492.1| - 1.9e-06 27.2 0.0 4.6e-06 25.9 0.0 1.6 2 0 0 2 2 2 1 Tellurite resistance protein TehB PrmA PF06325.8 gi|116754374|ref|YP_843492.1| - 4.3e-06 26.0 0.0 5.6e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_9 PF08003.6 gi|116754374|ref|YP_843492.1| - 0.0049 15.6 0.0 0.007 15.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|116754374|ref|YP_843492.1| - 0.0057 16.0 0.0 0.0098 15.2 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|116754374|ref|YP_843492.1| - 0.018 14.5 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF3419 PF11899.3 gi|116754374|ref|YP_843492.1| - 0.04 12.6 0.0 0.058 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) DREV PF05219.7 gi|116754374|ref|YP_843492.1| - 0.11 11.3 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase UPF0020 PF01170.13 gi|116754374|ref|YP_843492.1| - 0.14 11.7 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 NNMT_PNMT_TEMT PF01234.12 gi|116754374|ref|YP_843492.1| - 0.15 11.0 0.0 0.65 8.9 0.0 1.8 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family Rhodanese PF00581.15 gi|116754377|ref|YP_843495.1| - 1e-26 93.5 0.0 3e-12 46.8 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Glycos_transf_1 PF00534.15 gi|116754379|ref|YP_843497.1| - 2e-77 258.4 0.0 5e-32 110.6 0.0 3.4 3 0 0 3 3 3 3 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|116754379|ref|YP_843497.1| - 1.4e-39 135.3 0.1 7e-13 48.9 0.0 3.7 3 0 0 3 3 3 3 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|116754379|ref|YP_843497.1| - 5.6e-22 77.8 0.0 1.4e-09 38.1 0.0 4.2 4 0 0 4 4 4 3 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|116754379|ref|YP_843497.1| - 5.2e-07 29.5 0.0 5.7e-06 26.1 0.0 2.7 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Methyltransf_23 PF13489.1 gi|116754380|ref|YP_843498.1| - 5.7e-19 68.4 0.0 9.5e-19 67.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|116754380|ref|YP_843498.1| - 4.4e-14 52.7 0.0 9.9e-14 51.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|116754380|ref|YP_843498.1| - 9.3e-11 41.4 0.0 2.1e-10 40.2 0.0 1.6 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.2 gi|116754380|ref|YP_843498.1| - 2.3e-10 41.0 0.1 6.5e-10 39.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754380|ref|YP_843498.1| - 7e-08 32.7 0.0 1.9e-07 31.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116754380|ref|YP_843498.1| - 3.3e-07 30.0 0.0 6.6e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|116754380|ref|YP_843498.1| - 6.5e-07 29.7 0.0 1.4e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|116754380|ref|YP_843498.1| - 5.9e-05 22.3 0.0 0.00013 21.1 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|116754380|ref|YP_843498.1| - 0.0014 18.6 0.0 0.0063 16.5 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|116754380|ref|YP_843498.1| - 0.0033 16.5 0.0 0.0059 15.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|116754380|ref|YP_843498.1| - 0.012 15.5 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase Kinesin-related PF06548.6 gi|116754380|ref|YP_843498.1| - 0.016 13.7 3.4 0.026 13.1 2.4 1.2 1 0 0 1 1 1 0 Kinesin-related MTS PF05175.9 gi|116754380|ref|YP_843498.1| - 0.024 14.0 0.0 0.066 12.5 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase small domain TehB PF03848.9 gi|116754380|ref|YP_843498.1| - 0.1 11.7 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB PMT_2 PF13231.1 gi|116754381|ref|YP_843499.1| - 1.8e-05 24.7 9.9 1.8e-05 24.7 6.9 3.2 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_2 PF00535.21 gi|116754382|ref|YP_843500.1| - 2e-34 118.6 0.1 2.6e-34 118.3 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|116754382|ref|YP_843500.1| - 6.7e-10 39.1 0.0 1e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|116754382|ref|YP_843500.1| - 4.7e-07 30.0 0.0 7.8e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|116754382|ref|YP_843500.1| - 1.3e-05 24.6 0.0 2.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|116754382|ref|YP_843500.1| - 5.2e-05 22.4 0.0 7.6e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 AP_endonuc_2 PF01261.19 gi|116754383|ref|YP_843501.1| - 3.5e-21 75.4 0.0 4.8e-21 75.0 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Epimerase PF01370.16 gi|116754384|ref|YP_843502.1| - 1.4e-46 158.8 0.0 1.6e-46 158.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|116754384|ref|YP_843502.1| - 1.2e-14 53.9 0.0 1.6e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|116754384|ref|YP_843502.1| - 1.3e-13 50.2 0.0 2.1e-13 49.5 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|116754384|ref|YP_843502.1| - 4.2e-09 35.7 0.0 7.6e-06 25.0 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|116754384|ref|YP_843502.1| - 2.6e-08 33.1 0.0 5.2e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|116754384|ref|YP_843502.1| - 7.2e-05 22.7 0.0 0.00016 21.6 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|116754384|ref|YP_843502.1| - 0.00039 20.4 0.0 0.00052 20.0 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding ELFV_dehydrog PF00208.16 gi|116754384|ref|YP_843502.1| - 0.015 14.9 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KR PF08659.5 gi|116754384|ref|YP_843502.1| - 0.075 12.6 0.1 0.3 10.7 0.1 2.0 2 1 0 2 2 2 0 KR domain TrkA_N PF02254.13 gi|116754384|ref|YP_843502.1| - 0.12 12.3 0.0 16 5.5 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain ADH_zinc_N PF00107.21 gi|116754384|ref|YP_843502.1| - 0.13 11.8 0.0 8.6 5.9 0.0 2.4 2 0 0 2 2 2 0 Zinc-binding dehydrogenase NTP_transferase PF00483.18 gi|116754385|ref|YP_843503.1| - 7e-28 97.5 0.0 2.4e-27 95.8 0.0 1.7 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|116754385|ref|YP_843503.1| - 1.6e-11 44.5 0.0 2.6e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|116754385|ref|YP_843503.1| - 0.0019 17.7 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|116754385|ref|YP_843503.1| - 0.0074 15.9 0.0 0.014 15.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Smr PF01713.16 gi|116754385|ref|YP_843503.1| - 0.013 15.6 0.0 0.032 14.4 0.0 1.6 1 0 0 1 1 1 0 Smr domain CTP_transf_3 PF02348.14 gi|116754385|ref|YP_843503.1| - 0.017 14.7 0.0 0.03 13.9 0.0 1.4 1 1 0 1 1 1 0 Cytidylyltransferase UDPG_MGDP_dh_N PF03721.9 gi|116754386|ref|YP_843504.1| - 7.4e-55 185.1 0.0 3.4e-54 183.0 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|116754386|ref|YP_843504.1| - 2.4e-37 127.0 0.0 4.1e-37 126.2 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|116754386|ref|YP_843504.1| - 1.4e-28 99.1 0.0 3.4e-28 97.8 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pyr_redox PF00070.22 gi|116754386|ref|YP_843504.1| - 0.0002 21.6 0.6 0.00065 20.0 0.2 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|116754386|ref|YP_843504.1| - 0.00054 18.9 0.2 0.0018 17.2 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|116754386|ref|YP_843504.1| - 0.0015 18.2 0.0 0.0071 16.0 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|116754386|ref|YP_843504.1| - 0.0029 17.2 0.1 0.0099 15.5 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|116754386|ref|YP_843504.1| - 0.011 15.7 0.5 0.03 14.3 0.3 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.10 gi|116754386|ref|YP_843504.1| - 0.013 15.3 0.0 3.9 7.2 0.0 2.4 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|116754386|ref|YP_843504.1| - 0.024 14.0 0.0 0.04 13.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|116754386|ref|YP_843504.1| - 0.028 13.9 0.0 0.055 13.0 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|116754386|ref|YP_843504.1| - 0.12 11.2 0.3 0.18 10.6 0.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_11 PF14833.1 gi|116754386|ref|YP_843504.1| - 0.16 12.0 0.2 1 9.4 0.1 2.1 1 1 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase UPF0104 PF03706.8 gi|116754387|ref|YP_843505.1| - 1.7e-46 158.8 23.7 2.1e-46 158.5 16.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DPM3 PF08285.6 gi|116754387|ref|YP_843505.1| - 0.024 14.4 0.4 0.024 14.4 0.3 2.0 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) 7tm_7 PF08395.7 gi|116754387|ref|YP_843505.1| - 0.8 8.6 8.0 0.22 10.4 0.6 2.1 2 0 0 2 2 2 0 7tm Chemosensory receptor DUF1616 PF07760.6 gi|116754388|ref|YP_843506.1| - 1.3e-38 132.8 5.1 2.1e-38 132.1 3.6 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) PMT_2 PF13231.1 gi|116754389|ref|YP_843507.1| - 5.9e-08 32.7 15.1 5.9e-08 32.7 10.5 4.1 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase BacA PF02673.13 gi|116754390|ref|YP_843508.1| - 1e-19 70.7 6.2 1.2e-19 70.5 4.3 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF2117 PF09890.4 gi|116754391|ref|YP_843509.1| - 5.2e-68 228.4 0.0 7.9e-68 227.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) DUF2098 PF09871.4 gi|116754392|ref|YP_843510.1| - 3.1e-30 103.9 0.5 3.4e-30 103.8 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) YdfZ PF14001.1 gi|116754392|ref|YP_843510.1| - 0.12 12.7 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 YdfZ protein AAA_3 PF07726.6 gi|116754393|ref|YP_843511.1| - 5.9e-63 210.3 0.1 1e-62 209.5 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|116754393|ref|YP_843511.1| - 2.8e-11 43.3 0.0 4.4e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|116754393|ref|YP_843511.1| - 2.9e-06 27.5 0.0 5e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|116754393|ref|YP_843511.1| - 7.8e-05 21.8 0.2 0.0005 19.1 0.1 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus MCM PF00493.18 gi|116754393|ref|YP_843511.1| - 8.1e-05 21.5 0.0 0.00013 20.8 0.0 1.5 1 1 0 1 1 1 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|116754393|ref|YP_843511.1| - 0.0092 15.4 0.0 0.039 13.4 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|116754393|ref|YP_843511.1| - 0.026 13.7 0.2 0.22 10.6 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|116754393|ref|YP_843511.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF58 PF01882.13 gi|116754394|ref|YP_843512.1| - 5.4e-20 71.3 0.2 1.8e-19 69.6 0.0 1.9 2 1 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|116754394|ref|YP_843512.1| - 1.2e-06 28.7 0.1 1.9e-06 28.1 0.1 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|116754394|ref|YP_843512.1| - 1e-05 24.8 0.4 2.3e-05 23.6 0.3 1.6 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.4 gi|116754394|ref|YP_843512.1| - 0.011 15.7 0.1 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 VWA-like domain (DUF2201) DUF162 PF02589.10 gi|116754395|ref|YP_843513.1| - 0.14 11.6 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised ACR, YkgG family COG1556 Carb_kinase PF01256.12 gi|116754396|ref|YP_843514.1| - 2.5e-53 180.8 0.1 3.4e-53 180.4 0.1 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|116754396|ref|YP_843514.1| - 8.9e-40 136.0 0.2 3.9e-39 133.9 0.0 1.9 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|116754396|ref|YP_843514.1| - 1.3e-10 40.8 0.0 2.3e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family NAD_binding_10 PF13460.1 gi|116754396|ref|YP_843514.1| - 0.002 18.1 1.3 0.014 15.4 0.1 2.3 2 1 0 2 2 2 1 NADH(P)-binding Phos_pyr_kin PF08543.7 gi|116754396|ref|YP_843514.1| - 0.037 13.2 0.0 0.068 12.3 0.0 1.4 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase MoaC PF01967.16 gi|116754397|ref|YP_843515.1| - 7.4e-49 164.9 1.0 8.3e-49 164.7 0.7 1.0 1 0 0 1 1 1 1 MoaC family DUF59 PF01883.14 gi|116754397|ref|YP_843515.1| - 0.067 13.1 0.1 0.18 11.8 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function DUF59 AIRS PF00586.19 gi|116754398|ref|YP_843516.1| - 4e-23 81.4 0.1 8.7e-23 80.3 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|116754398|ref|YP_843516.1| - 1.7e-09 37.8 0.8 2.9e-09 37.1 0.6 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|116754399|ref|YP_843517.1| - 0.00025 20.8 1.4 0.00025 20.8 1.0 1.5 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|116754399|ref|YP_843517.1| - 0.00093 18.4 1.9 0.0025 17.0 1.3 1.9 1 1 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|116754399|ref|YP_843517.1| - 0.0012 19.1 0.2 0.0015 18.8 0.1 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.6 gi|116754399|ref|YP_843517.1| - 0.02 14.5 0.2 0.028 14.0 0.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ISL3 PF14690.1 gi|116754399|ref|YP_843517.1| - 0.02 14.9 0.4 1.6 8.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|116754399|ref|YP_843517.1| - 0.02 14.8 0.6 4.6 7.2 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|116754399|ref|YP_843517.1| - 0.023 14.1 3.1 0.41 10.1 2.2 2.1 1 1 2 3 3 3 0 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|116754399|ref|YP_843517.1| - 0.031 14.3 2.5 0.067 13.2 1.7 1.6 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase RecR PF02132.10 gi|116754399|ref|YP_843517.1| - 0.062 12.7 0.7 2.7 7.4 0.0 2.3 2 0 0 2 2 2 0 RecR protein TFIIS_C PF01096.13 gi|116754399|ref|YP_843517.1| - 0.063 12.9 1.1 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin PF00301.15 gi|116754399|ref|YP_843517.1| - 0.11 12.4 1.5 7 6.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin DZR PF12773.2 gi|116754399|ref|YP_843517.1| - 0.12 12.2 0.3 0.18 11.6 0.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|116754399|ref|YP_843517.1| - 0.13 11.9 0.2 3 7.5 0.1 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-TFIIB PF13453.1 gi|116754399|ref|YP_843517.1| - 0.17 11.1 2.5 1.3 8.2 0.1 2.4 3 0 0 3 3 3 0 Transcription factor zinc-finger C1_2 PF03107.11 gi|116754399|ref|YP_843517.1| - 0.2 11.7 1.5 0.3 11.2 0.1 1.8 2 0 0 2 2 2 0 C1 domain zf-ribbon_3 PF13248.1 gi|116754399|ref|YP_843517.1| - 0.24 10.6 2.4 3.8 6.8 0.1 2.4 2 1 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|116754399|ref|YP_843517.1| - 0.87 9.4 2.9 13 5.6 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RRN7 PF11781.3 gi|116754399|ref|YP_843517.1| - 2.5 7.6 7.7 17 5.0 5.3 2.1 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Molydop_binding PF01568.16 gi|116754400|ref|YP_843518.1| - 8.7e-18 64.1 0.0 1.1e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|116754401|ref|YP_843519.1| - 5e-14 51.8 0.0 1.9e-13 49.9 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.11 gi|116754401|ref|YP_843519.1| - 0.028 14.2 1.4 0.066 13.0 1.0 1.7 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Amidohydro_3 PF07969.6 gi|116754402|ref|YP_843520.1| - 9.9e-61 206.1 0.9 1.2e-60 205.8 0.6 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|116754402|ref|YP_843520.1| - 7e-11 41.7 0.1 8.2e-10 38.3 0.0 2.4 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|116754402|ref|YP_843520.1| - 4.4e-06 26.9 1.1 0.0034 17.4 0.4 2.9 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|116754402|ref|YP_843520.1| - 4.7e-06 26.5 0.0 0.00034 20.3 0.0 2.9 1 1 0 1 1 1 1 Amidohydrolase family YwhD PF08741.5 gi|116754402|ref|YP_843520.1| - 0.052 12.9 0.0 0.29 10.5 0.0 1.9 2 0 0 2 2 2 0 YwhD family GXGXG PF01493.14 gi|116754403|ref|YP_843521.1| - 5.7e-27 94.0 20.1 1.3e-26 92.8 14.0 1.5 1 1 0 1 1 1 1 GXGXG motif DUF1297 PF06973.7 gi|116754404|ref|YP_843522.1| - 4.2e-80 267.5 0.0 5.4e-80 267.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|116754404|ref|YP_843522.1| - 1.6e-44 150.6 0.0 2.3e-44 150.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|116754404|ref|YP_843522.1| - 0.0014 18.4 0.0 0.083 12.6 0.0 2.5 1 1 0 1 1 1 1 ATP-grasp domain bPH_3 PF14470.1 gi|116754405|ref|YP_843523.1| - 2.1e-05 24.7 0.0 2.7e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.9 gi|116754405|ref|YP_843523.1| - 0.00087 19.2 0.2 0.0014 18.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF523 PF04463.7 gi|116754406|ref|YP_843524.1| - 2.4e-19 69.5 0.0 3.2e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF523) Porphobil_deam PF01379.15 gi|116754406|ref|YP_843524.1| - 0.066 12.1 0.0 0.088 11.7 0.0 1.1 1 0 0 1 1 1 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain TroA PF01297.12 gi|116754407|ref|YP_843525.1| - 5.7e-82 274.8 0.0 6.4e-82 274.6 0.0 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family iPGM_N PF06415.8 gi|116754407|ref|YP_843525.1| - 0.12 11.6 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 BPG-independent PGAM N-terminus (iPGM_N) ABC_tran PF00005.22 gi|116754408|ref|YP_843526.1| - 1.5e-27 96.5 0.0 2.4e-27 95.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116754408|ref|YP_843526.1| - 4.6e-15 56.3 0.3 9.3e-07 29.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|116754408|ref|YP_843526.1| - 3.5e-06 26.4 0.1 0.016 14.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|116754408|ref|YP_843526.1| - 8.8e-05 21.7 0.0 0.045 12.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|116754408|ref|YP_843526.1| - 0.00022 20.7 0.0 0.00039 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|116754408|ref|YP_843526.1| - 0.00075 19.3 0.1 0.018 14.9 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ArgK PF03308.11 gi|116754408|ref|YP_843526.1| - 0.003 16.3 0.1 0.0044 15.8 0.1 1.2 1 0 0 1 1 1 1 ArgK protein AAA_10 PF12846.2 gi|116754408|ref|YP_843526.1| - 0.004 16.6 0.0 0.0058 16.1 0.0 1.5 2 0 0 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|116754408|ref|YP_843526.1| - 0.004 17.5 0.0 0.007 16.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_PrkA PF08298.6 gi|116754408|ref|YP_843526.1| - 0.017 13.8 0.0 0.022 13.4 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain AAA_16 PF13191.1 gi|116754408|ref|YP_843526.1| - 0.069 13.1 0.3 0.26 11.2 0.2 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|116754408|ref|YP_843526.1| - 0.075 12.9 0.0 2 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|116754408|ref|YP_843526.1| - 0.11 11.9 0.0 0.28 10.5 0.0 1.6 2 0 0 2 2 2 0 MutS domain V AAA_5 PF07728.9 gi|116754408|ref|YP_843526.1| - 0.11 12.2 0.1 3.4 7.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|116754408|ref|YP_843526.1| - 0.12 12.3 0.5 0.38 10.7 0.4 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC-3 PF00950.12 gi|116754409|ref|YP_843527.1| - 1e-72 244.5 39.6 1.2e-72 244.3 27.4 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|116754409|ref|YP_843527.1| - 1e-08 34.3 39.7 1.9e-08 33.5 27.5 1.4 1 1 0 1 1 1 1 FecCD transport family DsbD PF02683.10 gi|116754411|ref|YP_843529.1| - 3.9e-22 78.8 19.2 5.1e-22 78.5 13.3 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|116754411|ref|YP_843529.1| - 6e-06 25.9 0.0 1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|116754411|ref|YP_843529.1| - 0.00015 21.6 0.0 0.00026 20.9 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.15 gi|116754411|ref|YP_843529.1| - 0.043 13.4 0.0 0.068 12.8 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin HlyIII PF03006.15 gi|116754411|ref|YP_843529.1| - 2.3 7.5 14.0 0.093 12.1 2.8 2.3 2 0 0 2 2 2 0 Haemolysin-III related DUF318 PF03773.8 gi|116754412|ref|YP_843530.1| - 2.2e-73 246.9 29.0 2.7e-73 246.6 20.1 1.0 1 0 0 1 1 1 1 Predicted permease HTH_5 PF01022.15 gi|116754413|ref|YP_843531.1| - 9.7e-19 66.7 1.1 8.2e-18 63.8 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|116754413|ref|YP_843531.1| - 1.5e-11 43.9 0.2 3.4e-11 42.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|116754413|ref|YP_843531.1| - 0.00015 21.3 0.0 0.00028 20.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RP-C PF03428.8 gi|116754413|ref|YP_843531.1| - 0.026 13.9 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain MarR PF01047.17 gi|116754413|ref|YP_843531.1| - 0.045 13.4 0.0 0.099 12.3 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.1 gi|116754413|ref|YP_843531.1| - 0.14 12.3 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Response_reg PF00072.19 gi|116754414|ref|YP_843532.1| - 4.5e-15 55.6 0.1 1.4e-14 54.0 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain V-ATPase_C PF03223.10 gi|116754414|ref|YP_843532.1| - 0.026 13.4 0.2 0.038 12.8 0.1 1.2 1 0 0 1 1 1 0 V-ATPase subunit C Pribosyltran PF00156.22 gi|116754416|ref|YP_843534.1| - 6.5e-19 67.8 3.2 9.3e-19 67.3 2.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|116754416|ref|YP_843534.1| - 0.0003 20.1 0.0 0.00038 19.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|116754416|ref|YP_843534.1| - 0.00083 18.6 0.0 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF357 PF04010.8 gi|116754417|ref|YP_843535.1| - 5.1e-18 64.5 0.1 6.7e-18 64.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Amidohydro_4 PF13147.1 gi|116754418|ref|YP_843536.1| - 4.2e-35 122.1 1.3 5.5e-35 121.7 0.9 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|116754418|ref|YP_843536.1| - 8.9e-21 74.8 0.0 1.6e-20 74.0 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|116754418|ref|YP_843536.1| - 2e-15 56.3 0.7 4.9e-15 55.1 0.5 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|116754418|ref|YP_843536.1| - 1.9e-07 30.6 0.1 1.6e-05 24.3 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family DHOase PF12890.2 gi|116754418|ref|YP_843536.1| - 0.099 12.3 0.0 4.3 7.0 0.0 2.5 2 1 0 2 2 2 0 Dihydro-orotase-like Adenosine_kin PF04008.9 gi|116754419|ref|YP_843537.1| - 1.8e-73 245.1 0.0 2.1e-73 244.9 0.0 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DUF4013 PF13197.1 gi|116754421|ref|YP_843539.1| - 0.0001 21.6 39.4 0.00071 18.9 10.6 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF4013) Virul_fac_BrkB PF03631.10 gi|116754421|ref|YP_843539.1| - 0.57 9.4 29.8 0.29 10.4 5.4 2.9 1 1 2 3 3 3 0 Virulence factor BrkB DUF373 PF04123.8 gi|116754421|ref|YP_843539.1| - 9 5.1 16.2 0.27 10.2 4.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF373) OrfB_IS605 PF01385.14 gi|116754422|ref|YP_843540.1| - 9e-33 113.5 2.6 1.2e-32 113.1 1.8 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|116754422|ref|YP_843540.1| - 5.1e-25 86.9 1.1 1.7e-24 85.2 0.3 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|116754422|ref|YP_843540.1| - 6.1e-09 35.0 0.1 1.2e-08 34.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|116754422|ref|YP_843540.1| - 0.082 12.7 1.4 0.16 11.7 1.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|116754422|ref|YP_843540.1| - 0.14 11.9 2.8 1.7 8.4 2.1 2.2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 AHH PF14412.1 gi|116754422|ref|YP_843540.1| - 0.15 12.0 2.9 0.25 11.3 0.3 2.6 3 0 0 3 3 3 0 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH Herpes_UL14 PF03580.9 gi|116754422|ref|YP_843540.1| - 0.24 11.1 2.4 0.55 10.0 0.3 2.0 2 0 0 2 2 2 0 Herpesvirus UL14-like protein RecR PF02132.10 gi|116754422|ref|YP_843540.1| - 2.6 7.5 10.6 0.73 9.3 0.2 3.5 3 1 1 4 4 4 0 RecR protein RimK PF08443.6 gi|116754423|ref|YP_843541.1| - 9.1e-43 145.9 0.0 1.6e-42 145.1 0.0 1.4 2 0 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|116754423|ref|YP_843541.1| - 2.5e-16 59.3 0.0 4e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|116754423|ref|YP_843541.1| - 4.7e-09 36.2 0.0 6.7e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|116754423|ref|YP_843541.1| - 5.2e-08 32.9 0.0 4.1e-07 30.0 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|116754423|ref|YP_843541.1| - 6.3e-08 31.7 0.0 9.3e-08 31.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_YheCD PF14398.1 gi|116754423|ref|YP_843541.1| - 0.0004 19.2 0.1 0.13 11.0 0.0 2.5 3 0 0 3 3 3 2 YheC/D like ATP-grasp DUF46 PF01864.12 gi|116754424|ref|YP_843542.1| - 0.0054 16.6 0.4 0.01 15.6 0.2 1.5 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 DUF3185 PF11381.3 gi|116754424|ref|YP_843542.1| - 0.084 12.6 0.3 0.69 9.7 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) TP_methylase PF00590.15 gi|116754425|ref|YP_843543.1| - 2.3e-16 60.1 0.1 3.9e-16 59.3 0.0 1.4 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Thi4 PF01946.12 gi|116754426|ref|YP_843544.1| - 5.7e-84 280.7 4.2 6.8e-84 280.5 2.9 1.1 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|116754426|ref|YP_843544.1| - 2.3e-06 27.5 0.6 6.6e-06 26.0 0.4 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|116754426|ref|YP_843544.1| - 1.3e-05 24.5 3.7 3.3e-05 23.1 2.6 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|116754426|ref|YP_843544.1| - 1.8e-05 23.8 5.2 0.032 13.1 0.3 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|116754426|ref|YP_843544.1| - 0.00025 20.9 0.1 0.00042 20.2 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|116754426|ref|YP_843544.1| - 0.00051 18.6 0.9 0.00072 18.1 0.6 1.2 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|116754426|ref|YP_843544.1| - 0.00054 18.9 1.2 0.0036 16.2 0.2 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|116754426|ref|YP_843544.1| - 0.00075 18.4 3.0 0.003 16.4 0.3 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|116754426|ref|YP_843544.1| - 0.0013 17.9 0.0 0.0019 17.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|116754426|ref|YP_843544.1| - 0.0034 17.1 0.0 0.016 14.9 0.1 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|116754426|ref|YP_843544.1| - 0.011 14.6 0.0 0.019 13.8 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) UPF0146 PF03686.8 gi|116754427|ref|YP_843545.1| - 2.8e-25 88.5 0.0 3.2e-25 88.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Gp23 PF07068.6 gi|116754427|ref|YP_843545.1| - 0.11 11.0 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 Major capsid protein Gp23 Radical_SAM PF04055.16 gi|116754428|ref|YP_843546.1| - 1.7e-22 80.3 0.0 3.9e-22 79.2 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|116754428|ref|YP_843546.1| - 7.9e-09 35.7 1.1 1.5e-08 34.8 0.7 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|116754428|ref|YP_843546.1| - 3.3e-05 23.8 0.0 6e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|116754428|ref|YP_843546.1| - 9.9e-05 22.4 0.0 0.00015 21.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|116754429|ref|YP_843547.1| - 2.1e-54 184.4 0.6 2.1e-53 181.1 0.3 2.1 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.10 gi|116754429|ref|YP_843547.1| - 3.1e-52 177.1 0.0 6e-52 176.1 0.0 1.5 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DUF2073 PF09846.4 gi|116754429|ref|YP_843547.1| - 0.013 15.1 0.1 8.3 6.1 0.0 3.6 4 0 0 4 4 4 0 Uncharacterized protein conserved in archaea (DUF2073) DUF1967 PF09269.6 gi|116754429|ref|YP_843547.1| - 0.082 12.5 0.1 0.39 10.4 0.1 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF1967) Porphobil_deam PF01379.15 gi|116754430|ref|YP_843548.1| - 6.6e-58 195.1 0.0 8.5e-58 194.7 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|116754430|ref|YP_843548.1| - 2.8e-10 40.1 0.1 5.2e-10 39.2 0.1 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain LysR_substrate PF03466.15 gi|116754430|ref|YP_843548.1| - 0.041 12.9 0.1 0.43 9.6 0.0 2.1 2 0 0 2 2 2 0 LysR substrate binding domain Aminotran_3 PF00202.16 gi|116754431|ref|YP_843549.1| - 8.3e-67 225.4 0.0 1e-66 225.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|116754431|ref|YP_843549.1| - 0.094 11.6 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II DUF111 PF01969.12 gi|116754432|ref|YP_843550.1| - 4.1e-129 430.7 0.3 4.6e-129 430.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 IF2_N PF04760.10 gi|116754432|ref|YP_843550.1| - 0.011 15.3 0.0 0.031 13.9 0.0 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region dUTPase PF00692.14 gi|116754434|ref|YP_843552.1| - 1.4e-12 47.1 0.0 2.1e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase ATC_hydrolase PF14196.1 gi|116754436|ref|YP_843554.1| - 1.4e-06 28.8 0.2 1.6e-06 28.5 0.1 1.1 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase Lactamase_B_2 PF12706.2 gi|116754437|ref|YP_843555.1| - 3.6e-08 33.1 0.3 4e-07 29.7 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|116754437|ref|YP_843555.1| - 0.0013 18.4 0.0 0.0022 17.6 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|116754437|ref|YP_843555.1| - 0.0019 17.9 2.8 0.011 15.3 2.0 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|116754437|ref|YP_843555.1| - 0.062 13.1 0.1 0.14 11.9 0.1 1.6 1 0 0 1 1 1 0 RNA-metabolising metallo-beta-lactamase Thioredoxin PF00085.15 gi|116754438|ref|YP_843556.1| - 1.4e-24 85.7 0.0 1.6e-24 85.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|116754438|ref|YP_843556.1| - 8.2e-11 41.8 0.0 6e-07 29.5 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|116754438|ref|YP_843556.1| - 2.9e-10 40.3 0.0 1.6e-09 37.9 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|116754438|ref|YP_843556.1| - 2.3e-05 24.1 0.0 3.1e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|116754438|ref|YP_843556.1| - 4.3e-05 23.0 0.1 5.2e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|116754438|ref|YP_843556.1| - 7.9e-05 22.2 0.0 0.00034 20.1 0.0 1.8 2 0 0 2 2 2 1 Redoxin Thioredoxin_7 PF13899.1 gi|116754438|ref|YP_843556.1| - 0.00027 20.8 0.0 0.00047 20.1 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|116754438|ref|YP_843556.1| - 0.00085 19.0 0.0 0.0011 18.5 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family KaiB PF07689.7 gi|116754438|ref|YP_843556.1| - 0.0017 17.7 0.0 0.0022 17.4 0.0 1.2 1 0 0 1 1 1 1 KaiB domain TraF PF13728.1 gi|116754438|ref|YP_843556.1| - 0.0026 17.2 0.0 0.0033 16.9 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein HyaE PF07449.6 gi|116754438|ref|YP_843556.1| - 0.0058 16.5 0.0 0.0075 16.1 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE DUF836 PF05768.9 gi|116754438|ref|YP_843556.1| - 0.0064 16.7 0.0 0.0086 16.3 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) NADH_4Fe-4S PF10589.4 gi|116754438|ref|YP_843556.1| - 0.01 14.9 0.1 0.019 14.0 0.0 1.5 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DSBA PF01323.15 gi|116754438|ref|YP_843556.1| - 0.015 14.8 0.0 0.13 11.8 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DUF4174 PF13778.1 gi|116754438|ref|YP_843556.1| - 0.016 15.3 0.1 0.018 15.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4174) TrbC_Ftype PF09673.5 gi|116754438|ref|YP_843556.1| - 0.048 13.2 0.0 0.054 13.1 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein Thioredoxin_4 PF13462.1 gi|116754438|ref|YP_843556.1| - 0.065 13.2 0.0 0.63 10.0 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin HTH_AsnC-type PF13404.1 gi|116754439|ref|YP_843557.1| - 9.6e-11 41.0 0.5 1.8e-10 40.2 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|116754439|ref|YP_843557.1| - 5.6e-06 25.6 2.2 2e-05 23.8 1.5 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|116754439|ref|YP_843557.1| - 0.032 13.8 1.6 0.062 12.9 0.4 1.9 3 0 0 3 3 3 0 MarR family Radical_SAM PF04055.16 gi|116754440|ref|YP_843558.1| - 3.9e-20 72.6 0.0 5.5e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|116754440|ref|YP_843558.1| - 6.9e-08 32.7 0.8 1.4e-07 31.7 0.6 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|116754440|ref|YP_843558.1| - 2e-06 27.9 0.0 3.4e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|116754440|ref|YP_843558.1| - 4.6e-06 26.6 0.0 1.1e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Semialdhyde_dhC PF02774.13 gi|116754441|ref|YP_843559.1| - 2.6e-39 135.0 0.0 6.1e-39 133.7 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|116754441|ref|YP_843559.1| - 1.7e-32 112.2 0.0 2.8e-32 111.5 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|116754441|ref|YP_843559.1| - 0.0012 19.3 0.0 0.002 18.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|116754441|ref|YP_843559.1| - 0.086 12.7 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DUF2193 PF09959.4 gi|116754442|ref|YP_843560.1| - 4e-304 1008.3 10.8 4.5e-304 1008.1 7.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) DUF2180 PF09947.4 gi|116754443|ref|YP_843561.1| - 2.5e-36 123.2 4.2 2.7e-36 123.1 2.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.1 gi|116754443|ref|YP_843561.1| - 0.0023 18.3 2.8 0.014 15.7 0.1 2.1 2 0 0 2 2 2 1 DDE_Tnp_1-like zinc-ribbon FYVE PF01363.16 gi|116754443|ref|YP_843561.1| - 0.023 14.5 0.8 0.03 14.2 0.5 1.2 1 0 0 1 1 1 0 FYVE zinc finger Prok-RING_1 PF14446.1 gi|116754443|ref|YP_843561.1| - 0.026 14.2 5.1 1.3 8.8 0.0 2.3 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 zf-dskA_traR PF01258.12 gi|116754443|ref|YP_843561.1| - 0.27 11.0 0.2 0.27 11.0 0.1 2.4 2 1 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger ADK_lid PF05191.9 gi|116754443|ref|YP_843561.1| - 0.62 9.7 3.6 0.93 9.2 0.2 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid Transp_Tc5_C PF04236.10 gi|116754443|ref|YP_843561.1| - 0.98 9.6 5.6 0.15 12.2 1.2 1.7 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain MIP PF00230.15 gi|116754444|ref|YP_843562.1| - 8.1e-49 166.1 17.1 9.1e-49 165.9 11.8 1.0 1 0 0 1 1 1 1 Major intrinsic protein PTS_EIIC PF02378.13 gi|116754445|ref|YP_843563.1| - 0.01 14.6 0.3 0.01 14.6 0.2 1.7 2 0 0 2 2 2 0 Phosphotransferase system, EIIC BCD PF15461.1 gi|116754445|ref|YP_843563.1| - 0.026 13.9 1.7 0.034 13.5 1.2 1.2 1 0 0 1 1 1 0 Beta-carotene 15,15'-dioxygenase UbiA PF01040.13 gi|116754446|ref|YP_843564.1| - 3.3e-42 144.5 20.9 4e-42 144.2 14.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family FtsJ PF01728.14 gi|116754447|ref|YP_843565.1| - 2.3e-58 197.1 0.0 2.7e-58 196.9 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|116754447|ref|YP_843565.1| - 2.3e-09 36.8 0.1 4e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.1 gi|116754447|ref|YP_843565.1| - 6.2e-06 26.0 0.0 3.3e-05 23.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116754447|ref|YP_843565.1| - 6.7e-05 23.4 0.2 0.0023 18.4 0.2 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116754447|ref|YP_843565.1| - 0.00021 20.8 0.0 0.004 16.7 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|116754447|ref|YP_843565.1| - 0.0008 19.4 0.1 0.0034 17.4 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain NSP13 PF06460.7 gi|116754447|ref|YP_843565.1| - 0.018 13.9 0.0 0.022 13.6 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NSP13 NNMT_PNMT_TEMT PF01234.12 gi|116754447|ref|YP_843565.1| - 0.041 12.8 0.0 6 5.7 0.0 2.2 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family TrkA_N PF02254.13 gi|116754447|ref|YP_843565.1| - 0.058 13.4 0.1 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 TrkA-N domain Methyltransf_11 PF08241.7 gi|116754447|ref|YP_843565.1| - 0.063 13.7 0.1 0.34 11.4 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754447|ref|YP_843565.1| - 0.15 12.3 0.0 0.42 10.9 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain DUF763 PF05559.6 gi|116754448|ref|YP_843566.1| - 1.7e-130 434.6 0.0 2.2e-130 434.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) UbiA PF01040.13 gi|116754449|ref|YP_843567.1| - 3.9e-33 114.7 24.2 5e-33 114.4 16.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family OstA_2 PF13100.1 gi|116754449|ref|YP_843567.1| - 0.071 12.4 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 OstA-like protein Pex24p PF06398.6 gi|116754449|ref|YP_843567.1| - 0.35 9.6 1.0 0.6 8.8 0.7 1.3 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin Fig1 PF12351.3 gi|116754449|ref|YP_843567.1| - 0.82 9.5 4.8 0.81 9.5 0.8 2.2 2 0 0 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 DUF3353 PF11833.3 gi|116754449|ref|YP_843567.1| - 2.6 7.4 7.6 0.075 12.4 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) GPI PF06560.6 gi|116754450|ref|YP_843568.1| - 5e-51 172.3 0.0 6.4e-51 171.9 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|116754450|ref|YP_843568.1| - 0.0006 19.2 0.0 0.0031 16.9 0.0 2.0 2 0 0 2 2 2 1 Cupin domain Cupin_1 PF00190.17 gi|116754450|ref|YP_843568.1| - 0.0056 16.1 0.0 0.0075 15.7 0.0 1.2 1 0 0 1 1 1 1 Cupin ARD PF03079.9 gi|116754450|ref|YP_843568.1| - 0.03 14.2 0.0 0.046 13.6 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family PPC PF04151.10 gi|116754451|ref|YP_843569.1| - 0.031 15.2 0.0 0.1 13.5 0.0 1.8 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain Radical_SAM PF04055.16 gi|116754452|ref|YP_843570.1| - 1.6e-31 109.7 0.1 3.8e-31 108.5 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|116754452|ref|YP_843570.1| - 8.7e-21 73.9 0.0 1.6e-20 73.0 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|116754452|ref|YP_843570.1| - 9.4e-10 38.5 0.0 1.8e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|116754452|ref|YP_843570.1| - 1.1e-07 32.0 0.0 2.1e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain YibE_F PF07907.6 gi|116754453|ref|YP_843571.1| - 0.17 11.0 11.6 0.21 10.7 8.1 1.0 1 0 0 1 1 1 0 YibE/F-like protein EcsB PF05975.7 gi|116754453|ref|YP_843571.1| - 0.4 9.1 10.9 0.5 8.7 7.6 1.0 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB Acyl_transf_3 PF01757.17 gi|116754453|ref|YP_843571.1| - 0.49 9.1 11.7 0.56 8.9 8.1 1.0 1 0 0 1 1 1 0 Acyltransferase family Bax1-I PF01027.15 gi|116754453|ref|YP_843571.1| - 0.69 9.4 18.1 1.9 8.0 12.6 1.6 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF3784 PF12650.2 gi|116754453|ref|YP_843571.1| - 1 9.3 7.8 0.092 12.6 1.3 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF3784) NADH-u_ox-rdase PF10785.4 gi|116754453|ref|YP_843571.1| - 1.3 9.3 6.3 1.6 8.9 1.1 2.4 1 1 1 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Phtf-FEM1B_bdg PF12129.3 gi|116754453|ref|YP_843571.1| - 2.4 7.4 6.0 2.3 7.5 3.5 1.4 1 1 1 2 2 2 0 Male germ-cell putative homeodomain transcription factor Peptidase_U4 PF03419.8 gi|116754453|ref|YP_843571.1| - 3.6 6.5 8.0 4.4 6.3 5.6 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF1129 PF06570.6 gi|116754453|ref|YP_843571.1| - 4.6 6.4 6.8 0.66 9.2 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) PrgI PF12666.2 gi|116754453|ref|YP_843571.1| - 5.4 7.2 11.4 5.3 7.2 3.9 2.1 1 1 1 2 2 2 0 PrgI family protein Cation_efflux PF01545.16 gi|116754453|ref|YP_843571.1| - 6.1 5.8 16.7 16 4.4 11.6 1.6 1 1 0 1 1 1 0 Cation efflux family DUF2975 PF11188.3 gi|116754453|ref|YP_843571.1| - 6.2 6.5 11.5 3.5 7.3 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) ABC2_membrane_2 PF12679.2 gi|116754453|ref|YP_843571.1| - 8.7 5.1 19.8 1.6 7.5 3.7 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein Pyr_redox_2 PF07992.9 gi|116754454|ref|YP_843572.1| - 9.5e-29 100.7 0.1 1.5e-28 100.1 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|116754454|ref|YP_843572.1| - 2.5e-14 53.8 1.0 1.2e-09 38.5 0.0 2.9 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|116754454|ref|YP_843572.1| - 1.6e-07 30.1 2.1 0.0016 17.0 0.2 2.6 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.17 gi|116754454|ref|YP_843572.1| - 1.9e-07 30.3 3.1 0.00031 19.7 0.2 3.1 3 0 0 3 3 3 2 Glucose inhibited division protein A DAO PF01266.19 gi|116754454|ref|YP_843572.1| - 3.7e-07 29.3 1.6 0.0041 16.0 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|116754454|ref|YP_843572.1| - 5.6e-07 28.7 4.9 2.4e-05 23.3 1.0 2.7 2 1 1 3 3 3 2 FAD binding domain Thi4 PF01946.12 gi|116754454|ref|YP_843572.1| - 5.6e-06 25.6 0.2 1e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|116754454|ref|YP_843572.1| - 0.00015 20.9 0.0 0.00023 20.3 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|116754454|ref|YP_843572.1| - 0.0014 17.7 0.7 0.0024 16.9 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|116754454|ref|YP_843572.1| - 0.017 15.1 0.2 0.017 15.1 0.1 2.5 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|116754454|ref|YP_843572.1| - 0.028 14.8 5.5 0.069 13.5 0.1 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Radical_SAM PF04055.16 gi|116754455|ref|YP_843573.1| - 1.2e-06 28.8 0.0 4.4e-06 26.9 0.0 1.9 1 1 1 2 2 2 1 Radical SAM superfamily AA_kinase PF00696.23 gi|116754456|ref|YP_843574.1| - 3.3e-28 98.8 1.7 4.1e-28 98.5 1.2 1.1 1 0 0 1 1 1 1 Amino acid kinase family HrcA_DNA-bdg PF03444.10 gi|116754457|ref|YP_843575.1| - 2.8e-35 119.5 0.0 5.1e-35 118.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|116754457|ref|YP_843575.1| - 1.3e-16 60.0 0.7 3.4e-08 33.1 0.0 2.9 2 1 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|116754457|ref|YP_843575.1| - 2.1e-08 34.1 0.0 6.2e-08 32.6 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|116754457|ref|YP_843575.1| - 4.9e-06 26.0 0.4 1.4e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|116754457|ref|YP_843575.1| - 5.9e-05 22.7 0.1 0.00021 21.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|116754457|ref|YP_843575.1| - 0.004 16.8 0.1 0.022 14.4 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|116754457|ref|YP_843575.1| - 0.0065 16.0 0.6 0.017 14.6 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|116754457|ref|YP_843575.1| - 0.017 14.8 0.1 0.18 11.5 0.0 2.7 3 1 1 4 4 4 0 Sugar-specific transcriptional regulator TrmB Aconitase_2_N PF06434.8 gi|116754457|ref|YP_843575.1| - 0.024 14.0 0.1 0.031 13.7 0.1 1.4 1 0 0 1 1 1 0 Aconitate hydratase 2 N-terminus Sigma70_r4_2 PF08281.7 gi|116754457|ref|YP_843575.1| - 0.066 12.6 0.2 0.86 9.1 0.0 2.7 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|116754457|ref|YP_843575.1| - 0.072 12.7 0.0 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF2097 PF09870.4 gi|116754457|ref|YP_843575.1| - 0.073 13.1 0.1 0.3 11.2 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2097) HTH_24 PF13412.1 gi|116754457|ref|YP_843575.1| - 0.15 11.4 0.6 1.1 8.7 0.1 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Radical_SAM PF04055.16 gi|116754458|ref|YP_843576.1| - 1.4e-19 70.8 0.0 2.1e-19 70.3 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|116754458|ref|YP_843576.1| - 2.4e-06 27.7 1.4 4e-06 27.0 0.1 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|116754458|ref|YP_843576.1| - 9.2e-06 25.8 0.0 1.5e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|116754458|ref|YP_843576.1| - 0.0029 17.6 0.0 0.0048 16.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1537 PF07005.6 gi|116754458|ref|YP_843576.1| - 0.06 13.0 0.0 0.096 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF1537 DUF1906 PF08924.6 gi|116754458|ref|YP_843576.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) PRA-CH PF01502.13 gi|116754459|ref|YP_843577.1| - 2.7e-36 123.0 0.1 3.4e-36 122.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase DUF2162 PF09930.4 gi|116754460|ref|YP_843578.1| - 5.4e-72 241.5 18.8 6e-72 241.4 13.1 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) MotA_ExbB PF01618.11 gi|116754461|ref|YP_843579.1| - 9e-09 35.0 0.0 1.2e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family DUF1049 PF06305.6 gi|116754461|ref|YP_843579.1| - 0.029 13.8 1.1 0.23 10.9 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF2149 PF09919.4 gi|116754462|ref|YP_843580.1| - 2.3e-33 114.1 0.4 2.6e-33 113.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) RHIM PF12721.2 gi|116754462|ref|YP_843580.1| - 0.11 12.9 0.2 0.19 12.1 0.1 1.5 1 0 0 1 1 1 0 RIP homotypic interaction motif DUF4330 PF14221.1 gi|116754462|ref|YP_843580.1| - 9.9 5.9 7.2 0.93 9.3 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4330) Lactamase_B_2 PF12706.2 gi|116754463|ref|YP_843581.1| - 1.7e-22 79.8 0.0 2.1e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|116754463|ref|YP_843581.1| - 4.4e-11 42.7 1.0 1.2e-10 41.4 0.3 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily ScpA_ScpB PF02616.9 gi|116754464|ref|YP_843582.1| - 1.9e-31 109.4 6.9 3.5e-30 105.3 4.8 2.2 1 1 0 1 1 1 1 ScpA/B protein Packaging_FI PF14000.1 gi|116754464|ref|YP_843582.1| - 0.75 10.0 5.5 0.14 12.3 0.7 1.9 1 1 1 2 2 2 0 DNA packaging protein FI SMC_N PF02463.14 gi|116754465|ref|YP_843583.1| - 2.7e-71 239.3 0.1 3.4e-71 238.9 0.1 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|116754465|ref|YP_843583.1| - 2.2e-30 105.0 0.0 5.3e-30 103.8 0.0 1.7 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_21 PF13304.1 gi|116754465|ref|YP_843583.1| - 5.5e-12 46.2 0.8 5.1e-05 23.3 0.0 3.7 4 0 0 4 4 4 2 AAA domain AAA_15 PF13175.1 gi|116754465|ref|YP_843583.1| - 3e-09 36.4 0.1 1.1e-06 27.9 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain AAA_23 PF13476.1 gi|116754465|ref|YP_843583.1| - 3e-08 34.2 25.1 3e-08 34.2 17.4 5.9 2 2 0 2 2 1 1 AAA domain Reo_sigmaC PF04582.7 gi|116754465|ref|YP_843583.1| - 5.9e-07 28.9 24.3 0.075 12.2 0.3 5.3 2 2 2 6 6 6 4 Reovirus sigma C capsid protein AAA_29 PF13555.1 gi|116754465|ref|YP_843583.1| - 1.4e-06 27.7 0.0 2.8e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IncA PF04156.9 gi|116754465|ref|YP_843583.1| - 6.2e-06 25.9 116.5 0.094 12.2 14.7 7.8 2 2 6 8 8 8 4 IncA protein DUF3584 PF12128.3 gi|116754465|ref|YP_843583.1| - 2.2e-05 22.0 76.3 0.00013 19.5 7.7 4.1 2 2 2 4 4 4 3 Protein of unknown function (DUF3584) APG6 PF04111.7 gi|116754465|ref|YP_843583.1| - 0.00058 19.0 13.0 0.00058 19.0 9.0 7.1 2 2 7 9 9 9 2 Autophagy protein Apg6 AAA_22 PF13401.1 gi|116754465|ref|YP_843583.1| - 0.002 18.2 0.2 1.6 8.8 0.0 4.1 4 0 0 4 4 3 1 AAA domain CENP-F_leu_zip PF10473.4 gi|116754465|ref|YP_843583.1| - 0.0021 17.9 110.8 0.012 15.5 8.9 7.9 3 2 3 6 6 6 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.7 gi|116754465|ref|YP_843583.1| - 0.0045 16.8 13.0 5.4 6.8 0.2 6.2 2 2 4 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus ADIP PF11559.3 gi|116754465|ref|YP_843583.1| - 0.01 15.7 10.1 0.01 15.7 7.0 7.9 2 2 4 7 7 7 0 Afadin- and alpha -actinin-Binding GAS PF13851.1 gi|116754465|ref|YP_843583.1| - 0.016 14.3 73.8 0.081 12.1 2.0 8.2 4 2 3 8 8 8 0 Growth-arrest specific micro-tubule binding VWD PF00094.20 gi|116754465|ref|YP_843583.1| - 0.044 13.9 0.0 7.2 6.7 0.0 2.3 2 0 0 2 2 2 0 von Willebrand factor type D domain FtsK_SpoIIIE PF01580.13 gi|116754465|ref|YP_843583.1| - 0.093 12.1 0.0 0.093 12.1 0.0 4.1 3 2 0 3 3 1 0 FtsK/SpoIIIE family BLOC1_2 PF10046.4 gi|116754465|ref|YP_843583.1| - 0.1 12.7 0.1 0.1 12.7 0.1 9.1 4 2 3 9 9 9 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.4 gi|116754465|ref|YP_843583.1| - 0.12 11.0 52.8 0.025 13.3 4.1 5.6 2 2 3 6 6 6 0 Intra-flagellar transport protein 57 Filament PF00038.16 gi|116754465|ref|YP_843583.1| - 0.29 10.5 86.3 6.3 6.1 6.7 6.2 2 2 1 3 3 3 0 Intermediate filament protein DUF1664 PF07889.7 gi|116754465|ref|YP_843583.1| - 0.33 10.7 43.1 0.099 12.4 1.8 7.8 4 2 4 10 10 9 0 Protein of unknown function (DUF1664) DUF869 PF05911.6 gi|116754465|ref|YP_843583.1| - 0.57 8.3 72.7 0.2 9.8 0.8 5.1 2 2 2 4 4 4 0 Plant protein of unknown function (DUF869) ABC_tran PF00005.22 gi|116754465|ref|YP_843583.1| - 0.61 10.3 0.0 0.61 10.3 0.0 5.2 4 3 0 4 4 4 0 ABC transporter Spc7 PF08317.6 gi|116754465|ref|YP_843583.1| - 1.8 7.1 81.3 0.005 15.5 5.0 7.2 2 2 6 8 8 8 0 Spc7 kinetochore protein V_ATPase_I PF01496.14 gi|116754465|ref|YP_843583.1| - 3.3 5.4 61.8 0.043 11.6 7.6 5.3 2 2 3 6 6 6 0 V-type ATPase 116kDa subunit family WEMBL PF05701.6 gi|116754465|ref|YP_843583.1| - 4 5.7 92.7 0.035 12.5 24.7 3.9 2 2 1 3 3 3 0 Weak chloroplast movement under blue light Laminin_II PF06009.7 gi|116754465|ref|YP_843583.1| - 8.3 6.1 44.1 3.4 7.4 0.2 8.0 3 2 4 8 8 8 0 Laminin Domain II DUF342 PF03961.8 gi|116754465|ref|YP_843583.1| - 9.7 4.4 58.2 0.15 10.4 4.1 6.7 3 2 4 7 7 7 0 Protein of unknown function (DUF342) Fer4_20 PF14691.1 gi|116754467|ref|YP_843585.1| - 3.4e-42 142.5 0.9 5.6e-42 141.8 0.6 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|116754467|ref|YP_843585.1| - 6.3e-19 68.6 6.9 2.3e-16 60.2 4.8 4.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|116754467|ref|YP_843585.1| - 2.1e-13 50.4 4.1 1.2e-06 28.8 0.2 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|116754467|ref|YP_843585.1| - 4e-11 43.3 0.0 6.2e-06 26.4 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|116754467|ref|YP_843585.1| - 1.1e-08 35.0 0.2 5.3e-08 32.7 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|116754467|ref|YP_843585.1| - 9.6e-07 28.5 1.0 0.0026 17.3 0.1 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|116754467|ref|YP_843585.1| - 4.2e-06 26.9 0.2 0.0053 17.0 0.0 2.3 2 0 0 2 2 2 2 Putative NAD(P)-binding Thi4 PF01946.12 gi|116754467|ref|YP_843585.1| - 0.00011 21.3 0.6 0.00022 20.4 0.1 1.6 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|116754467|ref|YP_843585.1| - 0.00014 20.8 0.7 0.00014 20.8 0.5 2.4 2 1 0 2 2 2 1 FAD binding domain F420_oxidored PF03807.12 gi|116754467|ref|YP_843585.1| - 0.00035 20.9 0.2 0.2 12.1 0.0 2.9 3 0 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent HI0933_like PF03486.9 gi|116754467|ref|YP_843585.1| - 0.00041 18.9 0.3 0.00041 18.9 0.2 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|116754467|ref|YP_843585.1| - 0.00047 19.3 3.3 0.0057 15.7 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.19 gi|116754467|ref|YP_843585.1| - 0.00051 19.0 0.7 0.00051 19.0 0.5 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|116754467|ref|YP_843585.1| - 0.0014 18.4 0.2 0.42 10.3 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.17 gi|116754467|ref|YP_843585.1| - 0.0015 17.4 1.3 0.02 13.7 0.0 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.14 gi|116754467|ref|YP_843585.1| - 0.0017 17.5 0.0 2 7.5 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|116754467|ref|YP_843585.1| - 0.0021 17.6 0.0 0.41 10.1 0.0 2.2 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FAD_binding_3 PF01494.14 gi|116754467|ref|YP_843585.1| - 0.0029 16.7 1.1 0.016 14.2 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.13 gi|116754467|ref|YP_843585.1| - 0.0034 17.0 0.4 0.78 9.3 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|116754467|ref|YP_843585.1| - 0.0035 16.3 0.0 0.6 8.9 0.0 2.2 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.9 gi|116754467|ref|YP_843585.1| - 0.0042 16.4 2.3 0.0049 16.2 0.1 2.1 2 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amino_oxidase PF01593.19 gi|116754467|ref|YP_843585.1| - 0.0056 15.8 0.2 0.0056 15.8 0.1 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase IlvN PF07991.7 gi|116754467|ref|YP_843585.1| - 0.0075 15.6 0.1 2.9 7.2 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain Shikimate_DH PF01488.15 gi|116754467|ref|YP_843585.1| - 0.011 15.8 0.2 0.33 11.0 0.0 2.5 3 0 0 3 3 2 0 Shikimate / quinate 5-dehydrogenase CPSase_L_chain PF00289.17 gi|116754467|ref|YP_843585.1| - 0.012 15.7 0.2 0.61 10.2 0.1 2.4 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_10 PF13460.1 gi|116754467|ref|YP_843585.1| - 0.012 15.5 0.8 7.2 6.5 0.0 2.8 3 0 0 3 3 2 0 NADH(P)-binding Fer4_7 PF12838.2 gi|116754467|ref|YP_843585.1| - 0.028 14.8 0.3 0.028 14.8 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754467|ref|YP_843585.1| - 0.05 13.8 6.5 0.17 12.2 4.5 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Oxidored_nitro PF00148.14 gi|116754467|ref|YP_843585.1| - 0.063 11.9 0.1 0.88 8.1 0.0 2.1 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase NAD_binding_9 PF13454.1 gi|116754467|ref|YP_843585.1| - 0.1 12.3 1.2 0.22 11.2 0.1 2.0 2 0 0 2 2 2 0 FAD-NAD(P)-binding ApbA PF02558.11 gi|116754467|ref|YP_843585.1| - 0.12 11.8 0.1 0.28 10.5 0.1 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Fer4_8 PF13183.1 gi|116754467|ref|YP_843585.1| - 0.28 11.2 6.8 0.33 11.0 0.6 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|116754467|ref|YP_843585.1| - 7.9 7.1 13.4 0.06 13.6 1.8 2.5 2 1 0 2 2 1 0 4Fe-4S binding domain STT3 PF02516.9 gi|116754468|ref|YP_843586.1| - 3.1e-37 128.6 37.5 4.7e-37 128.0 26.0 1.2 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|116754468|ref|YP_843586.1| - 9.8e-08 32.0 17.2 9.8e-08 32.0 11.9 3.6 1 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF63 PF01889.12 gi|116754469|ref|YP_843587.1| - 7.4e-103 344.3 11.8 8.3e-103 344.1 8.2 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 FA_desaturase PF00487.19 gi|116754469|ref|YP_843587.1| - 0.17 11.2 2.4 0.36 10.2 1.7 1.5 1 0 0 1 1 1 0 Fatty acid desaturase Flavoprotein PF02441.14 gi|116754470|ref|YP_843588.1| - 6.2e-17 61.4 0.0 9.8e-17 60.8 0.0 1.3 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.22 gi|116754470|ref|YP_843588.1| - 2.1e-06 27.1 8.4 0.0038 16.7 0.4 3.4 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|116754470|ref|YP_843588.1| - 4.6e-05 23.0 12.9 0.012 15.4 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116754470|ref|YP_843588.1| - 4.9e-05 23.0 5.7 0.039 13.7 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754470|ref|YP_843588.1| - 0.00015 22.0 2.0 0.085 13.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754470|ref|YP_843588.1| - 0.00016 22.3 4.4 0.091 13.5 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|116754470|ref|YP_843588.1| - 0.00017 21.3 10.4 0.00028 20.6 7.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116754470|ref|YP_843588.1| - 0.00024 21.4 10.9 0.0043 17.3 7.9 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|116754470|ref|YP_843588.1| - 0.0013 18.5 11.7 0.21 11.5 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|116754470|ref|YP_843588.1| - 0.002 18.1 3.6 0.13 12.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754470|ref|YP_843588.1| - 0.013 15.7 10.4 0.15 12.3 8.0 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116754470|ref|YP_843588.1| - 0.31 11.6 0.1 0.31 11.6 0.1 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain Mut7-C PF01927.11 gi|116754471|ref|YP_843589.1| - 8.2e-24 84.2 6.6 8.7e-17 61.4 0.1 2.0 1 1 1 2 2 2 2 Mut7-C RNAse domain ADK_lid PF05191.9 gi|116754471|ref|YP_843589.1| - 0.011 15.3 1.9 0.17 11.5 0.1 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid Prok-RING_1 PF14446.1 gi|116754471|ref|YP_843589.1| - 0.04 13.6 0.2 0.086 12.5 0.0 1.6 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 RRN7 PF11781.3 gi|116754471|ref|YP_843589.1| - 0.05 13.0 0.2 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 A2L_zn_ribbon PF08792.5 gi|116754471|ref|YP_843589.1| - 0.62 9.5 3.6 6.2 6.3 2.5 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain Transglut_core PF01841.14 gi|116754472|ref|YP_843590.1| - 2e-08 34.3 0.1 2.9e-08 33.9 0.1 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily Peptidase_C93 PF06035.6 gi|116754472|ref|YP_843590.1| - 1.7e-05 24.3 0.0 2.3e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial transglutaminase-like cysteine proteinase BTLCP DUF553 PF04473.7 gi|116754472|ref|YP_843590.1| - 0.0015 17.7 0.9 0.1 11.8 0.7 2.2 1 1 0 1 1 1 1 Transglutaminase-like domain Exonuc_VII_S PF02609.11 gi|116754473|ref|YP_843591.1| - 1.1e-20 73.0 3.8 1.5e-20 72.6 2.7 1.2 1 0 0 1 1 1 1 Exonuclease VII small subunit DUF3461 PF11944.3 gi|116754473|ref|YP_843591.1| - 0.0027 17.5 0.3 0.003 17.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3461) GTPase_Cys_C PF12631.2 gi|116754473|ref|YP_843591.1| - 0.0054 17.1 0.3 0.025 14.9 0.2 1.8 1 1 1 2 2 2 2 Catalytic cysteine-containing C-terminus of GTPase, MnmE PXA PF02194.10 gi|116754473|ref|YP_843591.1| - 0.056 13.0 0.1 0.062 12.8 0.1 1.0 1 0 0 1 1 1 0 PXA domain Nnf1 PF03980.9 gi|116754473|ref|YP_843591.1| - 0.084 12.8 0.1 0.084 12.8 0.1 1.2 1 0 0 1 1 1 0 Nnf1 HEAT_2 PF13646.1 gi|116754474|ref|YP_843592.1| - 5.3e-23 81.1 3.1 3.6e-12 46.3 0.2 2.1 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.17 gi|116754474|ref|YP_843592.1| - 1.2e-14 52.9 1.9 0.00028 20.7 0.0 4.3 4 0 0 4 4 4 4 HEAT repeat HEAT_PBS PF03130.11 gi|116754474|ref|YP_843592.1| - 1.2e-12 46.9 1.0 1.7e-06 27.9 0.1 3.5 3 0 0 3 3 3 2 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|116754474|ref|YP_843592.1| - 2.2e-09 37.5 4.0 0.0016 18.8 0.1 4.3 2 1 2 4 4 4 2 HEAT-like repeat Cnd1 PF12717.2 gi|116754474|ref|YP_843592.1| - 9.9e-07 28.7 0.1 0.014 15.2 0.0 3.6 2 1 1 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Arm PF00514.18 gi|116754474|ref|YP_843592.1| - 6.5e-06 25.7 0.0 0.043 13.6 0.0 3.3 3 0 0 3 3 3 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|116754474|ref|YP_843592.1| - 0.0024 16.2 0.4 0.063 11.5 0.1 2.5 1 1 1 2 2 2 2 Adaptin N terminal region Aconitase_B_N PF11791.3 gi|116754474|ref|YP_843592.1| - 0.02 14.7 0.1 0.099 12.4 0.0 1.8 1 1 1 2 2 2 0 Aconitate B N-terminal domain Vac14_Fab1_bd PF12755.2 gi|116754474|ref|YP_843592.1| - 0.03 14.7 0.2 7.6 7.0 0.1 3.1 1 1 1 2 2 2 0 Vacuolar 14 Fab1-binding region Cohesin_HEAT PF12765.2 gi|116754474|ref|YP_843592.1| - 0.077 12.9 2.4 0.93 9.5 0.3 3.1 3 1 0 3 3 3 0 HEAT repeat associated with sister chromatid cohesion POR PF01558.13 gi|116754475|ref|YP_843593.1| - 1e-38 132.9 0.1 1.2e-38 132.7 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF3117 PF11314.3 gi|116754475|ref|YP_843593.1| - 0.089 12.3 0.2 18 4.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3117) TPP_enzyme_C PF02775.16 gi|116754476|ref|YP_843594.1| - 6.8e-23 80.9 0.1 1.2e-22 80.1 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|116754476|ref|YP_843594.1| - 3.9e-12 46.1 0.2 2.3e-11 43.6 0.2 2.0 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|116754476|ref|YP_843594.1| - 3.7e-07 29.4 15.4 1.1e-05 24.7 3.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116754476|ref|YP_843594.1| - 2.7e-05 23.9 11.7 0.0012 18.6 9.1 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754476|ref|YP_843594.1| - 0.00019 21.1 10.6 0.00019 21.1 7.4 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116754476|ref|YP_843594.1| - 0.00031 21.0 11.4 0.00031 21.0 7.9 2.3 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754476|ref|YP_843594.1| - 0.00033 20.8 12.3 0.00033 20.8 8.6 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|116754476|ref|YP_843594.1| - 0.0013 18.5 3.1 0.0013 18.5 2.2 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|116754476|ref|YP_843594.1| - 0.0036 17.3 10.7 0.012 15.6 7.5 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|116754476|ref|YP_843594.1| - 0.0085 16.3 18.3 0.014 15.7 2.2 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|116754476|ref|YP_843594.1| - 0.0085 16.5 13.7 0.5 10.8 2.7 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754476|ref|YP_843594.1| - 0.013 15.8 11.5 0.44 10.9 1.9 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754476|ref|YP_843594.1| - 0.022 14.6 15.5 0.091 12.7 3.1 2.9 1 1 1 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|116754476|ref|YP_843594.1| - 0.037 14.7 2.7 0.037 14.7 1.9 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain ThiC PF01964.13 gi|116754477|ref|YP_843595.1| - 7.2e-182 604.5 0.0 8.2e-182 604.3 0.0 1.0 1 0 0 1 1 1 1 ThiC family TPR_1 PF00515.23 gi|116754478|ref|YP_843596.1| - 0.0085 15.6 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|116754478|ref|YP_843596.1| - 0.0087 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|116754478|ref|YP_843596.1| - 0.095 12.6 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat tRNA-Thr_ED PF08915.6 gi|116754480|ref|YP_843598.1| - 6.2e-55 184.9 0.1 1.9e-54 183.3 0.0 1.8 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|116754480|ref|YP_843598.1| - 5.1e-23 81.5 0.7 9.3e-23 80.6 0.5 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|116754480|ref|YP_843598.1| - 5e-20 71.2 0.6 5e-20 71.2 0.4 2.0 3 0 0 3 3 3 1 Anticodon binding domain Glycoamylase PF10091.4 gi|116754480|ref|YP_843598.1| - 0.062 12.3 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Putative glucoamylase TPK_catalytic PF04263.11 gi|116754480|ref|YP_843598.1| - 0.086 12.4 0.0 0.28 10.7 0.0 1.8 2 0 0 2 2 2 0 Thiamin pyrophosphokinase, catalytic domain S-layer PF07752.6 gi|116754481|ref|YP_843599.1| - 1.7e-81 273.2 0.0 8.5e-42 143.1 0.0 2.9 3 1 0 3 3 3 2 S-layer protein Fer4_NifH PF00142.13 gi|116754482|ref|YP_843600.1| - 2.1e-90 302.6 0.9 2.4e-90 302.4 0.6 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|116754482|ref|YP_843600.1| - 2e-11 43.6 0.0 2.7e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|116754482|ref|YP_843600.1| - 3.9e-07 29.4 0.1 6.8e-07 28.6 0.1 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|116754482|ref|YP_843600.1| - 1.1e-05 25.3 0.0 2.4e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|116754482|ref|YP_843600.1| - 0.00032 20.2 0.0 0.0005 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain ArgK PF03308.11 gi|116754482|ref|YP_843600.1| - 0.00034 19.4 0.4 0.00048 19.0 0.3 1.2 1 0 0 1 1 1 1 ArgK protein CPSase_L_chain PF00289.17 gi|116754482|ref|YP_843600.1| - 0.0006 19.8 0.5 0.099 12.7 0.0 2.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain MipZ PF09140.6 gi|116754482|ref|YP_843600.1| - 0.0011 18.1 0.3 0.0054 15.8 0.0 1.9 2 0 0 2 2 2 1 ATPase MipZ AAA_16 PF13191.1 gi|116754482|ref|YP_843600.1| - 0.0026 17.7 0.0 0.01 15.8 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain ATP_bind_1 PF03029.12 gi|116754482|ref|YP_843600.1| - 0.0041 16.6 0.1 1.8 8.0 0.0 2.2 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|116754482|ref|YP_843600.1| - 0.014 15.0 0.1 0.2 11.3 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.1 gi|116754482|ref|YP_843600.1| - 0.014 14.7 0.0 0.037 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|116754482|ref|YP_843600.1| - 0.019 13.8 0.0 0.029 13.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|116754482|ref|YP_843600.1| - 0.051 13.2 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B adh_short_C2 PF13561.1 gi|116754482|ref|YP_843600.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.4 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase IstB_IS21 PF01695.12 gi|116754482|ref|YP_843600.1| - 0.12 11.7 0.2 0.2 11.0 0.1 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|116754482|ref|YP_843600.1| - 0.16 12.1 0.0 0.46 10.6 0.0 1.8 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|116754482|ref|YP_843600.1| - 0.18 11.5 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF87 GATase_3 PF07685.9 gi|116754483|ref|YP_843601.1| - 1.1e-29 103.1 0.0 1.9e-29 102.3 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|116754483|ref|YP_843601.1| - 2.5e-22 79.2 0.0 4.9e-22 78.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|116754483|ref|YP_843601.1| - 2.5e-19 69.6 0.3 2.3e-14 53.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain DS PF01916.12 gi|116754484|ref|YP_843602.1| - 3.3e-65 220.1 0.1 4.2e-65 219.8 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase NTP_transferase PF00483.18 gi|116754485|ref|YP_843603.1| - 2.1e-41 141.8 0.0 2.3e-41 141.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|116754485|ref|YP_843603.1| - 4.2e-14 52.9 0.0 4.7e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|116754485|ref|YP_843603.1| - 1.3e-06 28.0 0.0 5.4e-06 26.0 0.0 1.8 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|116754485|ref|YP_843603.1| - 0.018 14.7 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|116754486|ref|YP_843604.1| - 1.4e-11 44.0 0.0 1.8e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|116754486|ref|YP_843604.1| - 7.9e-06 26.0 0.0 1.9e-05 24.8 0.0 1.5 1 1 1 2 2 2 1 Glycosyl transferases group 1 Peptidase_M10 PF00413.19 gi|116754487|ref|YP_843605.1| - 0.00057 19.6 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 Matrixin Peptidase_M64 PF09471.5 gi|116754487|ref|YP_843605.1| - 0.085 12.4 0.3 0.84 9.2 0.0 2.3 2 0 0 2 2 2 0 IgA Peptidase M64 SRR PF07709.6 gi|116754487|ref|YP_843605.1| - 2.9 8.4 3.9 1.3 9.5 0.7 2.1 2 0 0 2 2 2 0 Seven Residue Repeat DDE_Tnp_1_5 PF13737.1 gi|116754488|ref|YP_843606.1| - 1.2e-28 99.4 0.0 2.9e-27 95.0 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|116754488|ref|YP_843606.1| - 1.9e-20 73.3 0.4 4.5e-20 72.1 0.2 1.6 1 1 0 1 1 1 1 Transposase DDE domain rve PF00665.21 gi|116754488|ref|YP_843606.1| - 0.12 12.4 0.1 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain Peripla_BP_2 PF01497.13 gi|116754489|ref|YP_843607.1| - 7.1e-46 156.2 0.0 9.5e-46 155.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|116754490|ref|YP_843608.1| - 1.6e-92 309.6 35.1 2e-92 309.3 24.3 1.0 1 0 0 1 1 1 1 FecCD transport family IspA PF04279.10 gi|116754490|ref|YP_843608.1| - 5.7 6.8 13.9 2.4 8.0 3.6 3.0 2 1 1 3 3 3 0 Intracellular septation protein A MMPL PF03176.10 gi|116754490|ref|YP_843608.1| - 7.8 5.1 13.8 0.96 8.0 5.9 2.1 2 0 0 2 2 2 0 MMPL family Peptidase_S9 PF00326.16 gi|116754491|ref|YP_843609.1| - 9.8e-20 70.6 0.1 6.5e-09 35.3 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|116754491|ref|YP_843609.1| - 5.2e-17 61.9 0.0 4.3e-16 58.9 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|116754491|ref|YP_843609.1| - 1.9e-16 60.6 0.0 2.5e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|116754491|ref|YP_843609.1| - 2.3e-07 30.3 0.0 2e-05 23.9 0.0 2.9 2 1 0 2 2 2 1 Dienelactone hydrolase family BAAT_C PF08840.6 gi|116754491|ref|YP_843609.1| - 2.7e-07 30.5 0.0 5.4e-06 26.2 0.0 2.1 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.8 gi|116754491|ref|YP_843609.1| - 4.5e-06 26.4 0.2 7.3e-05 22.4 0.1 2.5 2 1 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|116754491|ref|YP_843609.1| - 2.1e-05 24.0 0.0 0.00019 20.9 0.0 1.9 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.3 gi|116754491|ref|YP_843609.1| - 0.00028 20.6 0.0 0.0015 18.3 0.0 2.2 3 0 0 3 3 3 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|116754491|ref|YP_843609.1| - 0.00055 19.5 0.1 0.61 9.5 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold AXE1 PF05448.7 gi|116754491|ref|YP_843609.1| - 0.00095 17.7 0.0 0.003 16.1 0.0 1.8 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.11 gi|116754491|ref|YP_843609.1| - 0.0053 16.2 0.0 0.013 14.9 0.0 1.5 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase DUF4277 PF14104.1 gi|116754492|ref|YP_843610.1| - 1e-43 148.1 0.0 2.4e-43 146.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|116754492|ref|YP_843610.1| - 3.5e-11 43.0 0.8 2e-10 40.6 0.6 2.0 1 1 0 1 1 1 1 Transposase DDE domain BAAT_C PF08840.6 gi|116754493|ref|YP_843611.1| - 3.9e-41 141.0 0.0 5.2e-41 140.6 0.0 1.2 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Bile_Hydr_Trans PF04775.9 gi|116754493|ref|YP_843611.1| - 5e-30 103.7 0.0 9.2e-30 102.9 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA thioester hydrolase/BAAT N-terminal region Abhydrolase_5 PF12695.2 gi|116754493|ref|YP_843611.1| - 1.4e-06 28.1 0.0 3.1e-06 27.0 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|116754493|ref|YP_843611.1| - 5.7e-06 25.0 0.0 7.4e-05 21.3 0.0 2.0 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) DLH PF01738.13 gi|116754493|ref|YP_843611.1| - 1.1e-05 24.8 0.0 0.0015 17.8 0.0 2.3 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|116754493|ref|YP_843611.1| - 2.3e-05 24.3 0.1 4.3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|116754493|ref|YP_843611.1| - 0.00028 20.1 0.0 0.019 14.1 0.0 2.6 3 0 0 3 3 3 1 Prolyl oligopeptidase family Abhydrolase_3 PF07859.8 gi|116754493|ref|YP_843611.1| - 0.0007 19.2 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|116754493|ref|YP_843611.1| - 0.0079 15.6 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_7 PF12715.2 gi|116754493|ref|YP_843611.1| - 0.014 14.3 0.0 3 6.6 0.0 2.1 2 0 0 2 2 2 0 Abhydrolase family Esterase PF00756.15 gi|116754493|ref|YP_843611.1| - 0.015 14.7 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Abhydrolase_1 PF00561.15 gi|116754493|ref|YP_843611.1| - 0.043 13.3 0.0 0.066 12.7 0.0 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold DUF2974 PF11187.3 gi|116754493|ref|YP_843611.1| - 0.1 11.9 0.0 0.31 10.3 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2974) DUF2116 PF09889.4 gi|116754494|ref|YP_843612.1| - 6.7e-23 80.2 0.8 8.4e-23 79.9 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) OapA_N PF08525.6 gi|116754494|ref|YP_843612.1| - 0.12 12.2 2.5 0.22 11.3 1.7 1.4 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif AMP-binding PF00501.23 gi|116754497|ref|YP_843615.1| - 3.3e-93 312.3 0.0 4e-93 312.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|116754497|ref|YP_843615.1| - 1.9e-22 79.9 2.0 1.9e-22 79.9 1.4 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|116754498|ref|YP_843616.1| - 1.5e-94 316.7 0.0 1.9e-94 316.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|116754498|ref|YP_843616.1| - 4.7e-24 85.1 2.3 4.7e-24 85.1 1.6 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|116754499|ref|YP_843617.1| - 9.7e-92 307.5 0.0 1.2e-91 307.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|116754499|ref|YP_843617.1| - 5.8e-21 75.2 1.8 1.2e-20 74.2 1.3 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AAA_3 PF07726.6 gi|116754500|ref|YP_843618.1| - 5.8e-06 25.9 0.0 1.7e-05 24.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|116754500|ref|YP_843618.1| - 0.00016 21.4 0.0 0.00027 20.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|116754500|ref|YP_843618.1| - 0.035 13.8 0.0 0.086 12.5 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Gtr1_RagA PF04670.7 gi|116754500|ref|YP_843618.1| - 0.13 11.4 0.0 0.83 8.7 0.0 2.0 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region GXGXG PF01493.14 gi|116754501|ref|YP_843619.1| - 5.3e-17 61.4 19.5 8.2e-13 47.8 11.9 2.5 1 1 1 2 2 2 2 GXGXG motif VWA_2 PF13519.1 gi|116754502|ref|YP_843620.1| - 0.00022 21.3 0.0 0.00044 20.4 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain DS PF01916.12 gi|116754503|ref|YP_843621.1| - 9.2e-87 290.9 0.0 1.1e-86 290.7 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase GPP34 PF05719.6 gi|116754503|ref|YP_843621.1| - 0.067 13.2 0.0 0.22 11.5 0.0 1.8 2 0 0 2 2 2 0 Golgi phosphoprotein 3 (GPP34) TFX_C PF14601.1 gi|116754504|ref|YP_843622.1| - 8.2e-28 96.0 0.0 1.1e-27 95.6 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|116754504|ref|YP_843622.1| - 1e-08 34.3 2.0 2e-08 33.4 1.1 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|116754504|ref|YP_843622.1| - 4.6e-05 22.6 0.1 8.6e-05 21.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|116754504|ref|YP_843622.1| - 0.00014 21.2 0.6 0.00047 19.5 0.4 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|116754504|ref|YP_843622.1| - 0.00014 21.3 0.3 0.00025 20.5 0.2 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.1 gi|116754504|ref|YP_843622.1| - 0.00092 18.9 0.5 0.0014 18.4 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|116754504|ref|YP_843622.1| - 0.0013 18.8 1.6 0.0016 18.5 0.6 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|116754504|ref|YP_843622.1| - 0.004 16.9 0.2 0.0066 16.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_38 PF13936.1 gi|116754504|ref|YP_843622.1| - 0.033 13.7 0.1 0.088 12.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|116754504|ref|YP_843622.1| - 0.055 13.4 0.1 0.12 12.3 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|116754504|ref|YP_843622.1| - 0.067 13.3 0.3 0.31 11.1 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_19 PF12844.2 gi|116754504|ref|YP_843622.1| - 0.075 13.1 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3071 PF11268.3 gi|116754504|ref|YP_843622.1| - 0.1 12.3 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) ABC_tran PF00005.22 gi|116754505|ref|YP_843623.1| - 5.3e-32 110.9 0.0 7.3e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116754505|ref|YP_843623.1| - 4.2e-11 43.3 0.0 2.7e-05 24.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|116754505|ref|YP_843623.1| - 0.00034 19.9 0.0 0.015 14.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|116754505|ref|YP_843623.1| - 0.00062 19.8 0.1 0.0013 18.7 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|116754505|ref|YP_843623.1| - 0.002 17.2 0.0 0.045 12.8 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|116754505|ref|YP_843623.1| - 0.0037 17.1 0.0 0.025 14.4 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|116754505|ref|YP_843623.1| - 0.0093 16.3 0.1 0.014 15.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|116754505|ref|YP_843623.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain cobW PF02492.14 gi|116754505|ref|YP_843623.1| - 0.016 14.6 0.3 0.22 10.9 0.1 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|116754505|ref|YP_843623.1| - 0.031 13.4 0.0 0.052 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|116754505|ref|YP_843623.1| - 0.041 14.0 0.1 0.36 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|116754505|ref|YP_843623.1| - 0.05 12.4 0.1 0.085 11.7 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.9 gi|116754505|ref|YP_843623.1| - 0.057 13.1 0.3 0.48 10.1 0.1 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|116754505|ref|YP_843623.1| - 0.083 12.5 0.7 0.74 9.4 0.0 2.5 2 1 1 3 3 3 0 NACHT domain AAA_17 PF13207.1 gi|116754505|ref|YP_843623.1| - 0.12 13.2 1.8 0.27 12.0 1.2 2.0 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|116754505|ref|YP_843623.1| - 0.15 11.8 0.0 0.57 9.9 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 ATP-synt_ab PF00006.20 gi|116754505|ref|YP_843623.1| - 0.18 11.2 0.6 0.41 10.1 0.4 1.8 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|116754505|ref|YP_843623.1| - 1.2 9.4 3.2 1.3 9.2 0.4 2.3 2 1 1 3 3 3 0 AAA domain BPD_transp_1 PF00528.17 gi|116754506|ref|YP_843624.1| - 1.4e-15 57.2 13.8 2e-15 56.8 9.6 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component NicO PF03824.11 gi|116754506|ref|YP_843624.1| - 0.0021 17.4 3.5 0.0021 17.4 2.4 2.0 2 0 0 2 2 2 1 High-affinity nickel-transport protein PBP_like_2 PF12849.2 gi|116754507|ref|YP_843625.1| - 2.7e-22 79.5 0.0 3.2e-22 79.3 0.0 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|116754507|ref|YP_843625.1| - 3.1e-15 56.4 0.0 3.8e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|116754507|ref|YP_843625.1| - 8.9e-06 24.9 0.0 0.00027 20.1 0.0 2.1 2 0 0 2 2 2 1 LysR substrate binding domain SBP_bac_6 PF13343.1 gi|116754507|ref|YP_843625.1| - 0.002 17.5 0.0 0.0041 16.4 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|116754507|ref|YP_843625.1| - 0.0068 16.1 0.0 0.26 10.9 0.0 2.2 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|116754507|ref|YP_843625.1| - 0.044 13.5 0.0 0.96 9.1 0.0 2.2 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein NosD PF05048.8 gi|116754509|ref|YP_843627.1| - 1e-94 316.1 70.5 6.1e-45 153.2 10.7 4.1 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|116754509|ref|YP_843627.1| - 4.1e-56 189.1 85.1 9.4e-17 61.2 11.8 4.3 2 1 1 4 4 4 4 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|116754509|ref|YP_843627.1| - 1.6e-06 28.4 42.3 0.1 12.7 3.9 5.3 3 1 1 4 4 4 4 Pectate lyase superfamily protein Pectinesterase PF01095.14 gi|116754509|ref|YP_843627.1| - 0.033 12.7 0.0 0.075 11.5 0.0 1.6 1 0 0 1 1 1 0 Pectinesterase PLC-beta_C PF08703.5 gi|116754511|ref|YP_843629.1| - 0.071 12.8 0.5 0.078 12.6 0.4 1.0 1 0 0 1 1 1 0 PLC-beta C terminal DMPK_coil PF08826.5 gi|116754511|ref|YP_843629.1| - 0.1 12.5 1.0 0.11 12.3 0.7 1.1 1 0 0 1 1 1 0 DMPK coiled coil domain like APG17 PF04108.7 gi|116754511|ref|YP_843629.1| - 0.11 11.2 0.2 0.11 11.2 0.1 1.0 1 0 0 1 1 1 0 Autophagy protein Apg17 HATPase_c_4 PF13749.1 gi|116754512|ref|YP_843630.1| - 9.8e-19 66.9 0.0 1.9e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|116754512|ref|YP_843630.1| - 2.5e-16 59.9 0.0 4.5e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 Divergent AAA domain HTH_DeoR PF08220.7 gi|116754512|ref|YP_843630.1| - 0.0019 17.6 0.0 0.0046 16.4 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain PaaX PF07848.7 gi|116754512|ref|YP_843630.1| - 0.019 14.9 0.2 0.072 13.0 0.1 2.0 1 1 1 2 2 2 0 PaaX-like protein HTH_27 PF13463.1 gi|116754512|ref|YP_843630.1| - 0.092 13.0 0.0 0.3 11.4 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain NYD-SP28_assoc PF14775.1 gi|116754512|ref|YP_843630.1| - 0.11 12.2 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Sperm tail C-terminal domain N6_Mtase PF02384.11 gi|116754513|ref|YP_843631.1| - 1.5e-91 306.7 0.0 2e-91 306.3 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|116754513|ref|YP_843631.1| - 8.9e-30 103.8 0.0 1.8e-29 102.9 0.0 1.5 1 0 0 1 1 1 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|116754513|ref|YP_843631.1| - 5.5e-09 36.0 0.0 1.5e-08 34.6 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|116754513|ref|YP_843631.1| - 1.1e-05 25.0 0.0 2.2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 DUF761 PF05553.6 gi|116754513|ref|YP_843631.1| - 0.13 11.6 1.3 13 5.1 0.8 2.4 2 0 0 2 2 2 0 Cotton fibre expressed protein HsdM_N PF12161.3 gi|116754514|ref|YP_843632.1| - 8.1e-23 81.3 0.2 1.7e-22 80.3 0.0 1.5 2 0 0 2 2 2 1 HsdM N-terminal domain PIN_4 PF13638.1 gi|116754514|ref|YP_843632.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 PIN domain ADP_PFK_GK PF04587.10 gi|116754515|ref|YP_843633.1| - 4.4e-44 150.4 0.0 3.1e-43 147.6 0.0 1.9 1 1 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region PfkB PF00294.19 gi|116754515|ref|YP_843633.1| - 0.0025 17.0 3.8 0.68 9.0 0.1 3.2 3 0 0 3 3 3 3 pfkB family carbohydrate kinase DUF362 PF04015.7 gi|116754516|ref|YP_843634.1| - 1.6e-26 93.0 3.6 2.4e-23 82.7 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|116754516|ref|YP_843634.1| - 6.1e-11 41.4 15.3 3.5e-07 29.5 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|116754516|ref|YP_843634.1| - 5.9e-10 38.7 9.8 1e-09 38.0 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754516|ref|YP_843634.1| - 1.4e-09 37.2 12.7 0.00014 21.5 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116754516|ref|YP_843634.1| - 6.5e-09 35.2 11.9 0.00014 21.5 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|116754516|ref|YP_843634.1| - 1.3e-08 35.0 32.5 5.9e-06 26.4 8.7 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116754516|ref|YP_843634.1| - 4e-08 33.5 12.1 2e-07 31.2 8.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|116754516|ref|YP_843634.1| - 6.8e-07 29.0 8.7 0.0025 17.6 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754516|ref|YP_843634.1| - 5.8e-06 26.9 7.4 0.0023 18.6 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|116754516|ref|YP_843634.1| - 7.5e-05 22.6 8.7 0.018 15.0 9.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|116754516|ref|YP_843634.1| - 0.00016 21.7 14.8 0.016 15.4 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|116754516|ref|YP_843634.1| - 0.00072 19.9 17.0 0.038 14.4 2.8 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|116754516|ref|YP_843634.1| - 0.0013 19.1 18.5 0.032 14.7 3.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain DUF2088 PF09861.4 gi|116754516|ref|YP_843634.1| - 0.015 14.3 0.3 0.023 13.7 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) Fer4_17 PF13534.1 gi|116754516|ref|YP_843634.1| - 0.046 14.0 14.9 0.26 11.6 2.6 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|116754516|ref|YP_843634.1| - 0.14 12.0 4.9 0.23 11.3 3.4 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116754516|ref|YP_843634.1| - 0.25 11.9 13.6 0.28 11.7 1.3 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|116754516|ref|YP_843634.1| - 1.9 8.9 9.3 1.2 9.5 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Prismane PF03063.15 gi|116754517|ref|YP_843635.1| - 4.9e-127 424.4 0.0 5.7e-127 424.2 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Nitroreductase PF00881.19 gi|116754518|ref|YP_843636.1| - 7.2e-10 38.9 3.8 0.066 13.0 0.3 3.9 2 2 1 3 3 3 3 Nitroreductase family PGM_PMM_II PF02879.11 gi|116754518|ref|YP_843636.1| - 0.032 14.5 0.1 0.17 12.2 0.0 2.1 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Lyase_1 PF00206.15 gi|116754519|ref|YP_843637.1| - 2.4e-53 181.3 0.1 3.5e-53 180.8 0.1 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|116754519|ref|YP_843637.1| - 8.5e-27 92.9 0.3 1.8e-26 91.9 0.2 1.6 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus FumaraseC_C PF10415.4 gi|116754519|ref|YP_843637.1| - 0.0083 16.1 0.1 0.055 13.5 0.0 2.4 2 0 0 2 2 2 1 Fumarase C C-terminus MMR_HSR1 PF01926.18 gi|116754520|ref|YP_843638.1| - 2.2e-15 56.6 0.0 2.9e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|116754520|ref|YP_843638.1| - 3.2e-15 56.0 0.1 2.1e-07 30.5 0.0 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|116754520|ref|YP_843638.1| - 1.4e-06 27.7 0.0 0.0057 15.9 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family AAA_10 PF12846.2 gi|116754520|ref|YP_843638.1| - 1.7e-05 24.3 0.0 2.4e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain FeoB_N PF02421.13 gi|116754520|ref|YP_843638.1| - 6.4e-05 22.2 0.2 0.00053 19.2 0.1 2.3 1 1 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|116754520|ref|YP_843638.1| - 7.5e-05 23.2 0.0 0.0018 18.7 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein AAA_17 PF13207.1 gi|116754520|ref|YP_843638.1| - 0.00016 22.4 0.0 0.00028 21.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|116754520|ref|YP_843638.1| - 0.0004 20.6 0.0 0.0007 19.8 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|116754520|ref|YP_843638.1| - 0.00054 18.8 0.1 0.18 10.5 0.0 2.5 2 1 0 2 2 2 2 ArgK protein Ras PF00071.17 gi|116754520|ref|YP_843638.1| - 0.00065 19.1 0.0 0.19 11.0 0.0 2.6 2 1 0 2 2 2 1 Ras family UPF0150 PF03681.10 gi|116754520|ref|YP_843638.1| - 0.0011 18.6 0.1 0.0024 17.4 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Septin PF00735.13 gi|116754520|ref|YP_843638.1| - 0.0013 17.7 0.0 0.0019 17.2 0.0 1.2 1 0 0 1 1 1 1 Septin Parvo_NS1 PF01057.12 gi|116754520|ref|YP_843638.1| - 0.0022 16.9 0.1 0.0035 16.2 0.0 1.2 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_25 PF13481.1 gi|116754520|ref|YP_843638.1| - 0.003 16.9 0.2 0.0055 16.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain SRPRB PF09439.5 gi|116754520|ref|YP_843638.1| - 0.0043 16.2 0.0 0.41 9.8 0.0 2.3 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|116754520|ref|YP_843638.1| - 0.0099 16.1 0.0 0.015 15.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|116754520|ref|YP_843638.1| - 0.016 15.3 0.0 0.031 14.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|116754520|ref|YP_843638.1| - 0.018 14.7 0.0 0.026 14.2 0.0 1.3 1 1 0 1 1 1 0 Archaeal ATPase AAA_28 PF13521.1 gi|116754520|ref|YP_843638.1| - 0.026 14.4 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|116754520|ref|YP_843638.1| - 0.028 14.5 0.0 0.055 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|116754520|ref|YP_843638.1| - 0.045 14.0 0.0 0.059 13.6 0.0 1.2 1 0 0 1 1 1 0 ABC transporter DUF258 PF03193.11 gi|116754520|ref|YP_843638.1| - 0.054 12.6 0.0 0.088 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|116754520|ref|YP_843638.1| - 0.054 12.3 0.0 0.082 11.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|116754520|ref|YP_843638.1| - 0.054 13.1 0.0 0.099 12.3 0.0 1.6 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|116754520|ref|YP_843638.1| - 0.058 13.0 0.0 0.13 11.9 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.1 gi|116754520|ref|YP_843638.1| - 0.07 13.1 0.0 0.11 12.4 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.18 gi|116754520|ref|YP_843638.1| - 0.071 12.9 0.0 11 5.7 0.0 2.2 2 0 0 2 2 2 0 Dynamin family MMR_HSR1_C PF08438.5 gi|116754520|ref|YP_843638.1| - 0.11 12.6 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 GTPase of unknown function C-terminal PduV-EutP PF10662.4 gi|116754520|ref|YP_843638.1| - 0.12 11.9 0.0 21 4.5 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.1 gi|116754520|ref|YP_843638.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|116754520|ref|YP_843638.1| - 0.16 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2073 PF09846.4 gi|116754521|ref|YP_843639.1| - 4.7e-45 151.4 0.9 5.7e-45 151.2 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF2072 PF09845.4 gi|116754522|ref|YP_843640.1| - 1.4e-46 157.6 0.0 1.7e-46 157.4 0.0 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) HypA PF01155.14 gi|116754522|ref|YP_843640.1| - 0.01 15.4 0.2 0.017 14.8 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|116754522|ref|YP_843640.1| - 0.028 14.1 1.4 0.041 13.6 1.0 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ISL3 PF14690.1 gi|116754522|ref|YP_843640.1| - 0.13 12.3 0.7 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.1 gi|116754522|ref|YP_843640.1| - 0.2 10.9 1.5 0.64 9.2 0.0 2.5 3 0 0 3 3 3 0 Transcription factor zinc-finger 2-Hacid_dh_C PF02826.14 gi|116754525|ref|YP_843643.1| - 2.3e-65 219.0 0.0 4.8e-65 218.0 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|116754525|ref|YP_843643.1| - 3.8e-42 142.8 0.9 8e-42 141.8 0.6 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|116754525|ref|YP_843643.1| - 4.3e-06 26.6 2.5 1e-05 25.4 0.0 2.8 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|116754525|ref|YP_843643.1| - 0.00011 22.1 0.6 0.0014 18.4 0.0 2.4 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|116754525|ref|YP_843643.1| - 0.0002 21.4 0.2 0.019 15.1 0.0 3.0 3 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IlvN PF07991.7 gi|116754525|ref|YP_843643.1| - 0.00025 20.4 0.2 0.0023 17.3 0.0 2.4 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain ACT PF01842.20 gi|116754525|ref|YP_843643.1| - 0.0025 17.2 1.4 0.0077 15.7 0.0 2.6 3 0 0 3 3 3 1 ACT domain DUF22 PF01629.11 gi|116754525|ref|YP_843643.1| - 0.0096 15.4 0.0 0.052 13.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF22 ACT_4 PF13291.1 gi|116754525|ref|YP_843643.1| - 0.054 13.8 0.6 2.3 8.6 0.0 3.1 2 1 0 2 2 2 0 ACT domain PNP_UDP_1 PF01048.15 gi|116754526|ref|YP_843644.1| - 3.8e-38 130.7 0.1 4.5e-38 130.5 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DHODB_Fe-S_bind PF10418.4 gi|116754526|ref|YP_843644.1| - 0.013 15.0 0.1 0.031 13.7 0.1 1.7 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_10 PF13460.1 gi|116754526|ref|YP_843644.1| - 0.15 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 NADH(P)-binding ABC2_membrane PF01061.19 gi|116754528|ref|YP_843646.1| - 1.1e-24 86.8 24.2 1.1e-24 86.8 16.8 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|116754528|ref|YP_843646.1| - 1.1e-17 64.1 26.1 1.1e-17 64.1 18.1 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|116754528|ref|YP_843646.1| - 1e-05 24.5 20.3 1e-05 24.5 14.1 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein AtpR PF12966.2 gi|116754528|ref|YP_843646.1| - 1.7e-05 24.8 1.8 1.7e-05 24.8 1.3 2.9 2 2 0 2 2 2 1 N-ATPase, AtpR subunit ABC_tran PF00005.22 gi|116754529|ref|YP_843647.1| - 3.8e-29 101.7 0.0 6.4e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116754529|ref|YP_843647.1| - 1.5e-15 57.9 0.0 6.8e-11 42.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|116754529|ref|YP_843647.1| - 6.4e-05 23.3 0.7 0.00013 22.3 0.4 1.5 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|116754529|ref|YP_843647.1| - 0.00012 21.3 0.1 0.13 11.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF4162 PF13732.1 gi|116754529|ref|YP_843647.1| - 0.00014 22.3 0.0 0.00031 21.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|116754529|ref|YP_843647.1| - 0.0021 17.5 0.1 0.64 9.3 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|116754529|ref|YP_843647.1| - 0.0034 16.8 0.2 0.0069 15.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|116754529|ref|YP_843647.1| - 0.0049 17.0 0.9 0.063 13.4 0.2 2.5 2 1 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|116754529|ref|YP_843647.1| - 0.011 14.2 0.3 1.9 6.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|116754529|ref|YP_843647.1| - 0.011 15.1 0.0 0.029 13.7 0.0 1.7 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|116754529|ref|YP_843647.1| - 0.02 14.5 0.7 0.26 10.9 0.0 2.5 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|116754529|ref|YP_843647.1| - 0.023 14.8 0.4 2.1 8.5 0.0 2.9 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) SpoU_sub_bind PF08032.7 gi|116754529|ref|YP_843647.1| - 0.039 14.1 0.0 1.9 8.7 0.0 2.3 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding AAA_16 PF13191.1 gi|116754529|ref|YP_843647.1| - 0.066 13.1 0.3 0.26 11.2 0.2 2.2 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|116754529|ref|YP_843647.1| - 0.077 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|116754529|ref|YP_843647.1| - 0.098 12.5 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF1192 PF06698.6 gi|116754530|ref|YP_843648.1| - 0.018 14.8 1.5 0.024 14.4 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) SAP PF02037.22 gi|116754530|ref|YP_843648.1| - 0.026 14.0 1.1 0.28 10.7 0.0 2.3 1 1 1 2 2 2 0 SAP domain DUF4164 PF13747.1 gi|116754530|ref|YP_843648.1| - 0.027 14.5 1.2 0.032 14.3 0.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) AKNA PF12443.3 gi|116754530|ref|YP_843648.1| - 0.055 13.4 0.1 0.058 13.4 0.0 1.1 1 0 0 1 1 1 0 AT-hook-containing transcription factor DUF848 PF05852.6 gi|116754530|ref|YP_843648.1| - 0.072 12.9 0.1 0.078 12.8 0.1 1.1 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) Prefoldin_2 PF01920.15 gi|116754530|ref|YP_843648.1| - 0.14 11.9 2.0 0.16 11.7 1.4 1.1 1 0 0 1 1 1 0 Prefoldin subunit HTH_20 PF12840.2 gi|116754531|ref|YP_843649.1| - 1.8e-11 43.6 0.0 3e-11 42.9 0.0 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|116754531|ref|YP_843649.1| - 3.2e-06 26.6 0.0 9.8e-06 25.1 0.0 1.8 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|116754531|ref|YP_843649.1| - 0.0032 16.8 0.2 0.0069 15.7 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|116754531|ref|YP_843649.1| - 0.018 15.3 0.0 0.027 14.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.9 gi|116754531|ref|YP_843649.1| - 0.022 14.5 0.1 0.028 14.1 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FUR PF01475.14 gi|116754531|ref|YP_843649.1| - 0.025 14.4 0.0 0.03 14.2 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_12 PF08461.5 gi|116754531|ref|YP_843649.1| - 0.043 13.5 0.0 0.057 13.1 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF169 PF02596.10 gi|116754532|ref|YP_843650.1| - 3.1e-54 183.6 0.0 3.8e-54 183.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 DEAD PF00270.24 gi|116754533|ref|YP_843651.1| - 5.7e-23 81.2 0.0 1.3e-22 80.0 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|116754533|ref|YP_843651.1| - 6.4e-12 45.1 0.9 1.3e-11 44.1 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF2088 PF09861.4 gi|116754533|ref|YP_843651.1| - 0.17 10.8 0.1 0.29 10.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) MarR_2 PF12802.2 gi|116754534|ref|YP_843652.1| - 1.1e-10 41.0 0.0 4.3e-10 39.1 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|116754534|ref|YP_843652.1| - 8.5e-10 38.8 0.0 1.9e-09 37.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|116754534|ref|YP_843652.1| - 5.9e-09 35.1 0.0 4.4e-08 32.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|116754534|ref|YP_843652.1| - 8.9e-07 28.6 0.8 3.5e-05 23.5 0.0 3.0 3 1 0 3 3 2 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|116754534|ref|YP_843652.1| - 8.2e-06 25.4 0.0 2.3e-05 23.9 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_11 PF08279.7 gi|116754534|ref|YP_843652.1| - 5.5e-05 22.7 0.0 0.00011 21.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_17 PF12728.2 gi|116754534|ref|YP_843652.1| - 0.00014 22.0 0.3 0.065 13.4 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|116754534|ref|YP_843652.1| - 0.00014 21.5 0.0 0.00025 20.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_3 PF01381.17 gi|116754534|ref|YP_843652.1| - 0.00037 20.2 0.0 0.00099 18.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_13 PF11972.3 gi|116754534|ref|YP_843652.1| - 0.00046 19.9 0.0 0.001 18.8 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Fe_dep_repress PF01325.14 gi|116754534|ref|YP_843652.1| - 0.0014 18.5 0.0 0.0039 17.0 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|116754534|ref|YP_843652.1| - 0.0014 18.6 0.0 0.0039 17.2 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|116754534|ref|YP_843652.1| - 0.0016 17.9 0.0 0.004 16.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|116754534|ref|YP_843652.1| - 0.0021 17.4 0.8 0.015 14.7 0.0 2.7 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_Tnp_1 PF01527.15 gi|116754534|ref|YP_843652.1| - 0.0024 17.8 0.1 0.0048 16.8 0.1 1.5 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|116754534|ref|YP_843652.1| - 0.0035 16.9 0.0 0.0093 15.5 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HemN_C PF06969.11 gi|116754534|ref|YP_843652.1| - 0.0062 16.5 0.1 0.1 12.6 0.0 2.7 3 0 0 3 3 2 1 HemN C-terminal domain TrmB PF01978.14 gi|116754534|ref|YP_843652.1| - 0.012 15.2 0.1 0.039 13.6 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|116754534|ref|YP_843652.1| - 0.013 15.3 0.0 0.028 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain EAP30 PF04157.11 gi|116754534|ref|YP_843652.1| - 0.02 14.0 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family Mnd1 PF03962.10 gi|116754534|ref|YP_843652.1| - 0.022 14.4 0.0 0.034 13.8 0.0 1.3 1 0 0 1 1 1 0 Mnd1 family HTH_5 PF01022.15 gi|116754534|ref|YP_843652.1| - 0.025 14.2 0.0 0.054 13.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.7 gi|116754534|ref|YP_843652.1| - 0.032 13.8 0.1 0.17 11.4 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain HTH_36 PF13730.1 gi|116754534|ref|YP_843652.1| - 0.043 13.9 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|116754534|ref|YP_843652.1| - 0.052 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Mrr_N PF14338.1 gi|116754534|ref|YP_843652.1| - 0.052 13.6 0.1 0.31 11.1 0.0 2.0 1 1 1 2 2 2 0 Mrr N-terminal domain NodA PF02474.10 gi|116754534|ref|YP_843652.1| - 0.06 12.6 0.1 0.23 10.7 0.0 1.8 1 1 1 2 2 2 0 Nodulation protein A (NodA) DUF4423 PF14394.1 gi|116754534|ref|YP_843652.1| - 0.067 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_29 PF13551.1 gi|116754534|ref|YP_843652.1| - 0.091 12.9 0.1 0.23 11.6 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HxlR PF01638.12 gi|116754534|ref|YP_843652.1| - 0.094 12.3 0.1 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF387 PF04079.11 gi|116754534|ref|YP_843652.1| - 0.12 11.7 0.1 0.2 11.0 0.1 1.4 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) DUF2250 PF10007.4 gi|116754534|ref|YP_843652.1| - 0.14 12.0 0.0 0.36 10.7 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) ArsR PF09824.4 gi|116754535|ref|YP_843653.1| - 4.6e-70 234.0 0.0 5.2e-70 233.8 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator DUF4224 PF13986.1 gi|116754535|ref|YP_843653.1| - 0.012 15.1 0.6 0.4 10.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4224) DUF387 PF04079.11 gi|116754535|ref|YP_843653.1| - 0.014 14.7 0.1 0.13 11.6 0.0 2.0 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) DUF3958 PF13125.1 gi|116754535|ref|YP_843653.1| - 0.015 15.1 0.0 0.032 14.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3958) DUF4393 PF14337.1 gi|116754535|ref|YP_843653.1| - 0.055 12.9 0.0 0.095 12.1 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4393) ALS_ss_C PF10369.4 gi|116754535|ref|YP_843653.1| - 0.062 13.0 0.3 1.1 9.0 0.1 2.3 2 0 0 2 2 2 0 Small subunit of acetolactate synthase HTH_5 PF01022.15 gi|116754535|ref|YP_843653.1| - 0.11 12.1 0.0 2.2 8.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Epimerase_2 PF02350.14 gi|116754536|ref|YP_843654.1| - 2.1e-107 358.8 0.0 2.4e-107 358.6 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.1 gi|116754536|ref|YP_843654.1| - 0.00026 21.1 0.0 0.00056 20.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_28 PF03033.15 gi|116754536|ref|YP_843654.1| - 0.041 13.6 0.1 0.065 12.9 0.1 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Pyr_redox PF00070.22 gi|116754536|ref|YP_843654.1| - 0.075 13.4 0.0 0.21 12.0 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Cupredoxin_1 PF13473.1 gi|116754537|ref|YP_843655.1| - 0.0099 15.7 0.0 0.023 14.6 0.0 1.7 1 0 0 1 1 1 1 Cupredoxin-like domain CARDB PF07705.6 gi|116754537|ref|YP_843655.1| - 0.11 12.5 0.0 0.73 9.9 0.0 2.1 2 0 0 2 2 2 0 CARDB Ribosomal_L40e PF01020.12 gi|116754538|ref|YP_843656.1| - 0.0005 19.6 7.5 0.00067 19.2 5.2 1.3 1 0 0 1 1 1 1 Ribosomal L40e family zf-DHHC PF01529.15 gi|116754538|ref|YP_843656.1| - 0.0056 16.0 1.7 0.0058 16.0 1.2 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase DZR PF12773.2 gi|116754538|ref|YP_843656.1| - 0.0075 16.0 0.7 0.0082 15.9 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|116754538|ref|YP_843656.1| - 0.013 14.9 5.1 0.019 14.4 3.5 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|116754538|ref|YP_843656.1| - 0.11 11.9 0.2 0.15 11.5 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|116754538|ref|YP_843656.1| - 0.15 12.1 2.3 0.22 11.5 1.6 1.3 1 1 0 1 1 1 0 DnaJ central domain Mu-like_Com PF10122.4 gi|116754538|ref|YP_843656.1| - 2.3 7.3 9.5 6.1 5.9 6.6 1.8 1 1 0 1 1 1 0 Mu-like prophage protein Com RNA_POL_M_15KD PF02150.11 gi|116754538|ref|YP_843656.1| - 9 6.0 6.8 1.5e+02 2.1 4.7 2.1 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit PcrB PF01884.12 gi|116754539|ref|YP_843657.1| - 1.8e-75 253.1 0.1 2.2e-75 252.8 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|116754539|ref|YP_843657.1| - 1.2e-05 24.7 0.1 3.5e-05 23.1 0.0 1.8 2 1 1 3 3 3 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|116754539|ref|YP_843657.1| - 0.00063 18.7 0.2 0.0035 16.2 0.1 1.9 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain ThiG PF05690.9 gi|116754539|ref|YP_843657.1| - 0.0012 17.9 2.0 0.52 9.3 0.0 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|116754539|ref|YP_843657.1| - 0.0046 15.8 0.0 0.83 8.4 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) Ribul_P_3_epim PF00834.14 gi|116754539|ref|YP_843657.1| - 0.011 14.8 0.1 0.021 13.9 0.1 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DUF4350 PF14258.1 gi|116754539|ref|YP_843657.1| - 0.021 15.0 0.3 0.16 12.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) DHO_dh PF01180.16 gi|116754539|ref|YP_843657.1| - 0.081 11.8 0.4 0.13 11.2 0.3 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase TIM-br_sig_trns PF09370.5 gi|116754539|ref|YP_843657.1| - 0.084 11.9 0.5 0.49 9.4 0.0 2.0 2 0 0 2 2 2 0 TIM-barrel signal transduction protein Peptidase_M24 PF00557.19 gi|116754540|ref|YP_843658.1| - 1.1e-36 126.4 0.0 1.7e-36 125.7 0.0 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF389 PF04087.9 gi|116754541|ref|YP_843659.1| - 3.1e-35 121.1 21.0 3.1e-35 121.1 14.6 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF389) GerA PF03323.8 gi|116754541|ref|YP_843659.1| - 1.9 6.5 10.7 3.7 5.5 7.4 1.4 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein SHMT PF00464.14 gi|116754542|ref|YP_843660.1| - 7.6e-173 574.4 0.0 8.9e-173 574.2 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|116754542|ref|YP_843660.1| - 4.1e-07 29.4 0.1 6e-07 28.8 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|116754542|ref|YP_843660.1| - 6.9e-07 28.5 0.0 1.4e-06 27.5 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|116754542|ref|YP_843660.1| - 5.5e-06 25.3 0.0 8.2e-06 24.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|116754542|ref|YP_843660.1| - 0.012 14.6 0.3 0.025 13.6 0.2 1.5 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DUF3349 PF11829.3 gi|116754542|ref|YP_843660.1| - 0.036 14.4 0.0 0.12 12.8 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3349) SelA PF03841.8 gi|116754542|ref|YP_843660.1| - 0.08 11.6 0.0 0.16 10.6 0.0 1.6 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase THF_DHG_CYH_C PF02882.14 gi|116754543|ref|YP_843661.1| - 3.1e-65 218.1 2.2 4.2e-65 217.7 1.6 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|116754543|ref|YP_843661.1| - 7.7e-38 129.1 0.0 1.5e-37 128.1 0.0 1.5 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Ldh_1_N PF00056.18 gi|116754543|ref|YP_843661.1| - 0.048 13.4 0.2 0.45 10.3 0.1 2.2 1 1 1 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DUF2121 PF09894.4 gi|116754544|ref|YP_843662.1| - 6.9e-59 198.3 0.0 7.8e-59 198.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) NTP_transf_3 PF12804.2 gi|116754545|ref|YP_843663.1| - 3.3e-31 108.5 0.8 4.1e-31 108.2 0.5 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|116754545|ref|YP_843663.1| - 3.8e-06 26.5 0.1 2.3e-05 24.0 0.1 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|116754545|ref|YP_843663.1| - 0.014 14.7 0.0 0.026 13.8 0.0 1.5 1 0 0 1 1 1 0 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|116754545|ref|YP_843663.1| - 0.068 12.7 0.0 0.096 12.3 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Rubredoxin PF00301.15 gi|116754546|ref|YP_843664.1| - 1.2e-23 82.7 4.4 2.6e-23 81.6 3.0 1.6 1 0 0 1 1 1 1 Rubredoxin DJ-1_PfpI PF01965.19 gi|116754546|ref|YP_843664.1| - 1.2e-22 79.9 0.8 1.8e-22 79.3 0.5 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|116754546|ref|YP_843664.1| - 1.8e-10 40.3 0.0 2.5e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Putative amidotransferase zinc_ribbon_2 PF13240.1 gi|116754546|ref|YP_843664.1| - 0.008 15.6 0.9 0.69 9.4 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|116754546|ref|YP_843664.1| - 0.034 13.7 0.6 39 3.9 0.0 3.3 3 0 0 3 3 3 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|116754546|ref|YP_843664.1| - 0.11 11.6 1.4 0.69 9.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|116754546|ref|YP_843664.1| - 0.12 12.1 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-HIT PF04438.11 gi|116754546|ref|YP_843664.1| - 0.29 10.8 2.3 16 5.2 0.0 2.3 2 0 0 2 2 2 0 HIT zinc finger Zn-ribbon_8 PF09723.5 gi|116754546|ref|YP_843664.1| - 0.36 10.8 2.8 12 5.9 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Thymidylate_kin PF02223.12 gi|116754547|ref|YP_843665.1| - 7.9e-39 132.9 0.0 1.2e-38 132.4 0.0 1.2 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|116754547|ref|YP_843665.1| - 0.00015 22.0 0.0 0.00049 20.4 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|116754547|ref|YP_843665.1| - 0.0021 18.8 0.1 0.0057 17.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|116754547|ref|YP_843665.1| - 0.0046 16.8 0.0 0.01 15.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|116754547|ref|YP_843665.1| - 0.02 15.0 0.0 0.11 12.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain Arf PF00025.16 gi|116754547|ref|YP_843665.1| - 0.076 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_28 PF13521.1 gi|116754547|ref|YP_843665.1| - 0.078 12.9 0.0 0.14 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|116754547|ref|YP_843665.1| - 0.081 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Response_reg PF00072.19 gi|116754549|ref|YP_843667.1| - 6.1e-22 77.7 0.0 7.1e-22 77.5 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain YwhD PF08741.5 gi|116754549|ref|YP_843667.1| - 0.11 11.9 0.0 0.23 10.8 0.0 1.5 2 0 0 2 2 2 0 YwhD family FGGY_N PF00370.16 gi|116754550|ref|YP_843668.1| - 7.7e-33 113.8 0.0 1.8e-32 112.5 0.0 1.7 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|116754550|ref|YP_843668.1| - 9.4e-26 90.6 0.1 1.6e-25 89.9 0.1 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|116754550|ref|YP_843668.1| - 0.014 14.7 0.0 0.03 13.6 0.0 1.6 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Fels1 PF05666.6 gi|116754550|ref|YP_843668.1| - 0.044 13.1 0.0 0.081 12.3 0.0 1.4 1 0 0 1 1 1 0 Fels-1 Prophage Protein-like PolC_DP2 PF03833.8 gi|116754551|ref|YP_843669.1| - 0 1188.6 0.0 0 1182.0 0.0 2.5 2 1 0 2 2 2 1 DNA polymerase II large subunit DP2 DUF2072 PF09845.4 gi|116754551|ref|YP_843669.1| - 0.016 15.1 0.1 0.016 15.1 0.1 2.9 2 1 1 3 3 3 0 Zn-ribbon containing protein (DUF2072) TerY-C PF15616.1 gi|116754551|ref|YP_843669.1| - 0.055 13.3 8.4 0.04 13.8 3.5 2.2 2 0 0 2 2 2 0 TerY-C metal binding domain zf-C4_Topoisom PF01396.14 gi|116754551|ref|YP_843669.1| - 2.2 7.8 10.5 0.78 9.2 0.1 3.6 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|116754551|ref|YP_843669.1| - 5 7.5 16.7 21 5.4 4.3 4.0 3 1 1 4 4 4 0 Restriction alleviation protein Lar Nop10p PF04135.7 gi|116754551|ref|YP_843669.1| - 5.7 6.7 5.9 22 4.8 0.2 3.0 3 0 0 3 3 3 0 Nucleolar RNA-binding protein, Nop10p family Antiterm PF03589.8 gi|116754551|ref|YP_843669.1| - 6.5 6.9 5.6 14 5.8 0.0 2.6 2 0 0 2 2 2 0 Antitermination protein DUF296 PF03479.10 gi|116754552|ref|YP_843670.1| - 6.4e-27 93.5 0.0 7e-27 93.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) AIRS_C PF02769.17 gi|116754553|ref|YP_843671.1| - 2.4e-20 73.1 0.0 4.1e-20 72.3 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|116754553|ref|YP_843671.1| - 5.4e-16 58.6 0.5 1.1e-15 57.6 0.3 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AA_kinase PF00696.23 gi|116754554|ref|YP_843672.1| - 9.2e-49 166.1 1.0 3.6e-48 164.2 0.0 2.1 2 1 1 3 3 3 1 Amino acid kinase family ACT PF01842.20 gi|116754554|ref|YP_843672.1| - 1.6e-28 97.7 2.9 6.8e-14 50.9 0.1 3.2 3 0 0 3 3 3 2 ACT domain ACT_7 PF13840.1 gi|116754554|ref|YP_843672.1| - 6.5e-27 92.8 0.6 2.2e-14 52.7 0.2 2.5 2 0 0 2 2 2 2 ACT domain LytR_C PF13399.1 gi|116754554|ref|YP_843672.1| - 0.00028 21.1 0.2 0.12 12.8 0.1 2.4 1 1 1 2 2 2 2 LytR cell envelope-related transcriptional attenuator ACT_6 PF13740.1 gi|116754554|ref|YP_843672.1| - 0.0011 18.6 1.1 0.019 14.6 0.0 2.9 3 0 0 3 3 3 1 ACT domain NAD_binding_7 PF13241.1 gi|116754554|ref|YP_843672.1| - 0.049 13.8 0.2 1.7 8.9 0.0 2.7 2 1 0 2 2 2 0 Putative NAD(P)-binding DUF2007 PF09413.5 gi|116754554|ref|YP_843672.1| - 0.12 12.2 0.5 0.86 9.4 0.3 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF2007) CPSase_L_D2 PF02786.12 gi|116754555|ref|YP_843673.1| - 8.1e-107 355.2 0.6 8.8e-71 237.5 0.1 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|116754555|ref|YP_843673.1| - 3.2e-50 168.8 0.2 3.2e-24 85.1 0.0 3.1 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|116754555|ref|YP_843673.1| - 3.9e-45 152.5 0.0 8.3e-45 151.5 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|116754555|ref|YP_843673.1| - 3.9e-40 137.5 0.1 9.6e-19 67.8 0.0 2.5 3 0 0 3 3 3 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|116754555|ref|YP_843673.1| - 5.1e-31 107.6 0.0 6.6e-13 48.1 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|116754555|ref|YP_843673.1| - 3e-20 71.9 0.0 1.6e-18 66.3 0.0 3.7 4 0 0 4 4 3 1 MGS-like domain ATP-grasp PF02222.17 gi|116754555|ref|YP_843673.1| - 1.5e-18 66.6 0.0 1.3e-08 34.4 0.0 2.7 3 0 0 3 3 3 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|116754555|ref|YP_843673.1| - 2.1e-15 56.6 0.0 5.3e-07 29.2 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|116754555|ref|YP_843673.1| - 1.3e-13 51.1 0.2 1.5e-05 24.8 0.1 2.6 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|116754555|ref|YP_843673.1| - 1.1e-08 34.8 0.0 2.4e-06 27.1 0.0 2.9 3 0 0 3 3 3 1 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|116754555|ref|YP_843673.1| - 2e-07 30.8 0.0 0.022 14.3 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|116754555|ref|YP_843673.1| - 2.4e-06 26.9 0.1 0.005 16.0 0.0 3.3 2 1 1 3 3 3 2 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|116754555|ref|YP_843673.1| - 2.4e-05 23.7 0.0 0.069 12.5 0.0 2.8 2 0 0 2 2 2 2 ATP-grasp domain Ribosomal_L7Ae PF01248.21 gi|116754555|ref|YP_843673.1| - 0.062 12.8 0.0 0.31 10.5 0.0 2.2 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family STAS PF01740.16 gi|116754555|ref|YP_843673.1| - 0.08 12.3 0.0 9.3 5.7 0.0 2.8 2 0 0 2 2 2 0 STAS domain Hydrolase PF00702.21 gi|116754555|ref|YP_843673.1| - 0.089 13.1 0.0 18 5.6 0.0 3.1 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase MerR-DNA-bind PF09278.6 gi|116754555|ref|YP_843673.1| - 0.095 13.1 1.0 24 5.3 1.0 3.9 3 1 0 3 3 3 0 MerR, DNA binding CPSase_sm_chain PF00988.17 gi|116754556|ref|YP_843674.1| - 5.9e-47 158.4 0.0 8.7e-47 157.9 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|116754556|ref|YP_843674.1| - 4.6e-40 137.1 0.0 6.5e-40 136.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|116754556|ref|YP_843674.1| - 1.4e-09 37.7 0.0 2.3e-07 30.4 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 DnaJ PF00226.26 gi|116754556|ref|YP_843674.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 DnaJ domain OTCace_N PF02729.16 gi|116754557|ref|YP_843675.1| - 1.2e-50 170.8 0.0 5.1e-50 168.8 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|116754557|ref|YP_843675.1| - 5.5e-35 120.5 0.0 8.4e-35 119.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|116754558|ref|YP_843676.1| - 5.8e-39 132.0 0.9 7.3e-39 131.6 0.6 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|116754558|ref|YP_843676.1| - 1.9e-18 65.6 0.7 3.1e-18 64.9 0.5 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain T2SE PF00437.15 gi|116754558|ref|YP_843676.1| - 0.029 13.2 0.2 0.034 13.0 0.1 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein PGM_PMM_I PF02878.11 gi|116754559|ref|YP_843677.1| - 8.7e-24 83.5 0.1 2.6e-23 82.0 0.0 1.9 1 1 1 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|116754559|ref|YP_843677.1| - 4.2e-18 65.5 0.1 8.3e-18 64.6 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|116754559|ref|YP_843677.1| - 3.1e-17 62.6 0.0 5.9e-17 61.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|116754559|ref|YP_843677.1| - 1.3e-10 41.1 0.0 4.8e-10 39.2 0.0 2.0 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Protein_K PF12283.3 gi|116754559|ref|YP_843677.1| - 0.085 12.7 0.2 1.7 8.6 0.0 2.3 2 0 0 2 2 2 0 Bacteriophage protein K Glycos_transf_2 PF00535.21 gi|116754560|ref|YP_843678.1| - 6.6e-20 71.4 0.0 9.9e-20 70.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|116754560|ref|YP_843678.1| - 1.1e-08 35.1 0.0 1.6e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|116754560|ref|YP_843678.1| - 0.00036 20.8 0.0 0.00056 20.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Rhomboid PF01694.17 gi|116754560|ref|YP_843678.1| - 0.38 10.7 5.2 0.39 10.7 1.3 2.0 2 0 0 2 2 2 0 Rhomboid family Transglut_core3 PF13471.1 gi|116754561|ref|YP_843679.1| - 9.4e-05 22.1 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily FMN_red PF03358.10 gi|116754562|ref|YP_843680.1| - 2e-15 56.6 0.3 3.3e-13 49.4 0.2 2.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.2 gi|116754562|ref|YP_843680.1| - 1.3e-13 51.1 0.0 2.5e-13 50.2 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|116754562|ref|YP_843680.1| - 1.4e-12 47.7 0.1 2e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|116754562|ref|YP_843680.1| - 6.3e-08 32.2 0.0 1e-07 31.5 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_2 PF02525.12 gi|116754562|ref|YP_843680.1| - 2.3e-05 24.0 0.0 0.00024 20.6 0.0 2.0 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_4 PF12682.2 gi|116754562|ref|YP_843680.1| - 4e-05 23.0 0.0 0.0016 17.7 0.0 2.1 1 1 1 2 2 2 1 Flavodoxin DUF917 PF06032.7 gi|116754562|ref|YP_843680.1| - 0.0037 15.8 0.4 0.005 15.4 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF917) Enterotoxin_a PF01375.12 gi|116754562|ref|YP_843680.1| - 0.076 12.2 0.0 0.2 10.9 0.0 1.6 1 1 0 1 1 1 0 Heat-labile enterotoxin alpha chain IF-2B PF01008.12 gi|116754563|ref|YP_843681.1| - 4.5e-87 291.6 0.1 5e-87 291.4 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Aminotran_1_2 PF00155.16 gi|116754564|ref|YP_843682.1| - 1.1e-42 146.3 0.0 3e-42 144.8 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|116754564|ref|YP_843682.1| - 0.0011 17.7 0.0 0.002 16.8 0.0 1.3 1 0 0 1 1 1 1 Allinase HTH_32 PF13565.1 gi|116754564|ref|YP_843682.1| - 0.062 14.1 0.0 0.16 12.7 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain NRDD PF13597.1 gi|116754565|ref|YP_843683.1| - 1.5e-154 515.0 0.0 1.8e-154 514.8 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|116754565|ref|YP_843683.1| - 0.058 13.8 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 ATP cone domain Fer4 PF00037.22 gi|116754566|ref|YP_843684.1| - 3.1e-19 67.6 17.4 1.7e-10 40.0 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116754566|ref|YP_843684.1| - 1.2e-14 53.3 16.2 3.2e-08 33.0 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116754566|ref|YP_843684.1| - 1.4e-12 47.8 14.0 1.6e-12 47.5 9.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754566|ref|YP_843684.1| - 1.7e-12 46.4 17.2 1.9e-07 30.5 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|116754566|ref|YP_843684.1| - 1.9e-12 47.2 28.7 1.2e-09 38.2 11.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754566|ref|YP_843684.1| - 9.2e-12 44.5 13.9 1.1e-11 44.2 9.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|116754566|ref|YP_843684.1| - 3.9e-10 39.4 13.7 4.5e-10 39.2 9.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754566|ref|YP_843684.1| - 7.3e-10 39.4 14.4 2.3e-05 25.0 1.6 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|116754566|ref|YP_843684.1| - 7.8e-08 32.7 17.7 1.2e-05 25.7 3.0 2.6 1 1 2 3 3 3 3 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|116754566|ref|YP_843684.1| - 2e-07 30.7 14.9 0.00043 20.4 3.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|116754566|ref|YP_843684.1| - 4.4e-07 30.1 18.5 0.00056 20.2 3.1 2.5 1 1 2 3 3 3 3 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|116754566|ref|YP_843684.1| - 1.3e-06 28.3 17.0 4.6e-05 23.3 11.9 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|116754566|ref|YP_843684.1| - 1.4e-06 28.4 19.6 0.00052 20.3 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|116754566|ref|YP_843684.1| - 2.2e-06 27.8 15.9 0.00086 19.6 2.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|116754566|ref|YP_843684.1| - 2.5e-05 24.0 7.5 2.8e-05 23.9 5.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|116754566|ref|YP_843684.1| - 0.00094 19.5 17.2 0.044 14.2 3.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|116754566|ref|YP_843684.1| - 0.02 14.7 7.5 0.026 14.3 5.2 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster AAA PF00004.24 gi|116754567|ref|YP_843685.1| - 1.2e-43 148.5 0.5 5.5e-43 146.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|116754567|ref|YP_843685.1| - 6.9e-07 29.4 0.9 1.5e-06 28.3 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|116754567|ref|YP_843685.1| - 8.6e-05 22.6 1.2 0.0013 18.8 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|116754567|ref|YP_843685.1| - 0.00018 21.2 1.1 0.0015 18.3 0.2 2.8 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|116754567|ref|YP_843685.1| - 0.00038 20.4 0.2 0.002 18.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|116754567|ref|YP_843685.1| - 0.00038 19.5 0.0 0.0011 18.1 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|116754567|ref|YP_843685.1| - 0.0004 20.0 1.1 0.00074 19.2 0.1 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|116754567|ref|YP_843685.1| - 0.00077 20.2 0.6 0.0019 19.0 0.0 2.0 2 1 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|116754567|ref|YP_843685.1| - 0.002 18.0 0.0 0.005 16.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|116754567|ref|YP_843685.1| - 0.003 17.4 0.4 0.0085 15.9 0.0 2.1 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|116754567|ref|YP_843685.1| - 0.005 16.2 0.1 0.016 14.6 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|116754567|ref|YP_843685.1| - 0.0056 16.8 0.0 0.055 13.6 0.0 2.4 2 0 0 2 2 2 1 RNA helicase KaiC PF06745.8 gi|116754567|ref|YP_843685.1| - 0.007 15.5 0.5 0.18 10.9 0.0 2.9 1 1 1 3 3 3 1 KaiC TIP49 PF06068.8 gi|116754567|ref|YP_843685.1| - 0.0084 14.8 0.0 0.02 13.6 0.0 1.6 1 0 0 1 1 1 1 TIP49 C-terminus DUF815 PF05673.8 gi|116754567|ref|YP_843685.1| - 0.018 13.9 0.0 0.041 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|116754567|ref|YP_843685.1| - 0.022 14.3 0.0 0.055 13.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.1 gi|116754567|ref|YP_843685.1| - 0.031 13.6 1.4 0.22 10.9 0.1 2.3 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|116754567|ref|YP_843685.1| - 0.036 14.3 0.1 0.12 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|116754567|ref|YP_843685.1| - 0.059 12.4 1.7 0.075 12.1 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin NB-ARC PF00931.17 gi|116754567|ref|YP_843685.1| - 0.073 11.9 0.0 0.16 10.7 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_3 PF07726.6 gi|116754567|ref|YP_843685.1| - 0.075 12.6 0.0 0.19 11.3 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HALZ PF02183.13 gi|116754567|ref|YP_843685.1| - 0.079 12.6 7.5 0.16 11.7 1.5 2.7 2 0 0 2 2 2 0 Homeobox associated leucine zipper AAA_28 PF13521.1 gi|116754567|ref|YP_843685.1| - 0.081 12.8 0.4 0.26 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Ax_dynein_light PF10211.4 gi|116754567|ref|YP_843685.1| - 0.11 12.2 5.6 0.25 11.1 3.9 1.6 1 0 0 1 1 1 0 Axonemal dynein light chain DUF4618 PF15397.1 gi|116754567|ref|YP_843685.1| - 0.12 11.6 2.5 0.098 11.9 0.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) bZIP_1 PF00170.16 gi|116754567|ref|YP_843685.1| - 0.16 11.9 9.5 0.095 12.6 0.9 2.6 1 1 1 2 2 2 0 bZIP transcription factor Cep57_CLD_2 PF14197.1 gi|116754567|ref|YP_843685.1| - 0.7 9.8 8.3 1.8 8.5 5.7 1.7 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 IncA PF04156.9 gi|116754567|ref|YP_843685.1| - 1 8.9 4.8 0.49 9.9 1.9 1.5 2 0 0 2 2 1 0 IncA protein Mto2_bdg PF12808.2 gi|116754567|ref|YP_843685.1| - 2.3 8.4 12.0 0.42 10.7 1.3 2.6 1 1 0 2 2 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region DUF972 PF06156.8 gi|116754567|ref|YP_843685.1| - 7.2 7.0 6.4 3 8.2 1.7 2.5 3 0 0 3 3 2 0 Protein of unknown function (DUF972) DUF2099 PF09872.4 gi|116754568|ref|YP_843686.1| - 1.3e-94 316.0 0.4 1.6e-94 315.7 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Methyltransf_25 PF13649.1 gi|116754569|ref|YP_843687.1| - 1.9e-05 24.9 0.0 0.00015 22.0 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116754569|ref|YP_843687.1| - 7.2e-05 22.5 0.0 0.00018 21.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|116754569|ref|YP_843687.1| - 0.00053 20.0 0.0 0.00097 19.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|116754569|ref|YP_843687.1| - 0.00078 19.0 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|116754569|ref|YP_843687.1| - 0.0028 16.8 0.0 0.0077 15.3 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|116754569|ref|YP_843687.1| - 0.036 13.4 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.7 gi|116754569|ref|YP_843687.1| - 0.12 12.8 0.0 0.33 11.4 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116754569|ref|YP_843687.1| - 0.12 12.9 0.5 0.46 11.0 0.1 2.2 2 1 0 2 2 2 0 Methyltransferase domain TrkA_N PF02254.13 gi|116754570|ref|YP_843688.1| - 1.3e-16 60.6 0.0 2.7e-16 59.5 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|116754570|ref|YP_843688.1| - 1.2e-08 34.4 1.7 1e-07 31.4 0.1 2.3 2 0 0 2 2 2 1 TrkA-C domain Na_H_Exchanger PF00999.16 gi|116754571|ref|YP_843689.1| - 6.2e-72 242.2 56.5 8e-72 241.8 39.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|116754571|ref|YP_843689.1| - 0.025 14.5 0.1 0.05 13.5 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain SurE PF01975.12 gi|116754572|ref|YP_843690.1| - 4.2e-57 192.6 0.5 5.2e-57 192.3 0.3 1.0 1 0 0 1 1 1 1 Survival protein SurE NosD PF05048.8 gi|116754573|ref|YP_843691.1| - 1.6e-46 158.3 40.8 3.3e-29 101.7 10.2 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|116754573|ref|YP_843691.1| - 7.1e-29 100.5 58.4 1.2e-14 54.3 18.0 3.1 1 1 2 3 3 3 3 Right handed beta helix region DUF1565 PF07602.6 gi|116754573|ref|YP_843691.1| - 1e-06 28.0 36.5 0.0046 16.1 8.2 3.8 1 1 2 3 3 3 3 Protein of unknown function (DUF1565) Big_3_4 PF13754.1 gi|116754573|ref|YP_843691.1| - 0.049 13.9 0.0 0.18 12.1 0.0 2.0 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) DUF1498 PF07385.7 gi|116754573|ref|YP_843691.1| - 0.085 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1498) DUF2889 PF11136.3 gi|116754573|ref|YP_843691.1| - 0.18 11.9 0.5 17 5.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2889) Rhodanese PF00581.15 gi|116754574|ref|YP_843692.1| - 1.4e-21 76.9 0.0 9e-13 48.5 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain Peptidase_S8 PF00082.17 gi|116754575|ref|YP_843693.1| - 5.8e-58 196.2 0.0 7.3e-58 195.9 0.0 1.1 1 0 0 1 1 1 1 Subtilase family NAD_kinase PF01513.16 gi|116754576|ref|YP_843694.1| - 2.2e-45 154.6 0.0 2.6e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DeoRC PF00455.17 gi|116754576|ref|YP_843694.1| - 0.0002 21.0 0.0 0.00037 20.1 0.0 1.4 1 0 0 1 1 1 1 DeoR C terminal sensor domain DAGK_cat PF00781.19 gi|116754576|ref|YP_843694.1| - 0.00075 18.9 0.1 0.0036 16.7 0.0 2.0 1 1 1 2 2 2 1 Diacylglycerol kinase catalytic domain PALP PF00291.20 gi|116754577|ref|YP_843695.1| - 1.4e-33 116.4 0.0 1.7e-33 116.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1636 PF07845.6 gi|116754577|ref|YP_843695.1| - 0.057 13.6 0.0 1.4 9.1 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1636) Cucumo_2B PF03263.8 gi|116754577|ref|YP_843695.1| - 0.12 12.6 0.0 0.32 11.3 0.0 1.7 2 0 0 2 2 2 0 Cucumovirus protein 2B SSF PF00474.12 gi|116754578|ref|YP_843696.1| - 2.2e-43 148.4 31.9 3.2e-43 147.9 22.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Endonuclease_5 PF04493.9 gi|116754579|ref|YP_843697.1| - 2.2e-58 197.0 0.0 2.5e-58 196.8 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|116754579|ref|YP_843697.1| - 0.028 13.5 0.0 0.055 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF99 NHL PF01436.16 gi|116754580|ref|YP_843698.1| - 6.4e-30 101.5 0.1 9.3e-05 22.1 0.0 6.8 6 0 0 6 6 6 6 NHL repeat Thioredoxin_8 PF13905.1 gi|116754580|ref|YP_843698.1| - 4.2e-11 42.8 0.0 8.3e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|116754580|ref|YP_843698.1| - 2.6e-10 40.0 0.0 4.8e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|116754580|ref|YP_843698.1| - 8e-08 31.9 0.0 1.9e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|116754580|ref|YP_843698.1| - 0.0052 16.9 0.0 0.01 16.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|116754580|ref|YP_843698.1| - 0.0078 15.8 0.0 0.23 11.1 0.0 2.3 2 0 0 2 2 2 1 Thioredoxin PQQ_3 PF13570.1 gi|116754580|ref|YP_843698.1| - 0.013 15.7 8.8 5.3 7.4 0.0 5.9 5 1 1 6 6 6 0 PQQ-like domain Radical_SAM PF04055.16 gi|116754581|ref|YP_843699.1| - 2.3e-10 40.8 0.0 3.1e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|116754581|ref|YP_843699.1| - 2.2e-06 27.4 1.7 0.005 16.4 2.1 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) Cna_B PF05738.8 gi|116754582|ref|YP_843700.1| - 6.8e-07 28.9 2.5 8.6e-07 28.6 0.5 2.1 2 0 0 2 2 2 1 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|116754582|ref|YP_843700.1| - 3.9e-06 26.8 1.9 2.2e-05 24.4 0.3 2.7 1 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF2012 PF09430.5 gi|116754582|ref|YP_843700.1| - 0.0011 18.7 0.1 0.013 15.3 0.0 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF2012) DUF3823 PF12866.2 gi|116754582|ref|YP_843700.1| - 0.0014 18.1 0.0 0.0022 17.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3823) DUF4480 PF13715.1 gi|116754582|ref|YP_843700.1| - 0.012 15.6 0.1 0.069 13.1 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4480) fn3_3 PF14686.1 gi|116754582|ref|YP_843700.1| - 0.1 12.7 0.6 0.97 9.5 0.0 2.5 2 1 1 3 3 3 0 Polysaccharide lyase family 4, domain II DsrH PF04077.7 gi|116754585|ref|YP_843703.1| - 2.7e-06 26.9 0.0 3.8e-06 26.4 0.0 1.3 1 1 0 1 1 1 1 DsrH like protein DrsE PF02635.10 gi|116754586|ref|YP_843704.1| - 2.1e-07 31.0 0.0 2.6e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.7 gi|116754586|ref|YP_843704.1| - 3.6e-05 23.3 0.0 4.5e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 DsrH like protein DrsE PF02635.10 gi|116754587|ref|YP_843705.1| - 5.2e-16 58.8 0.0 5.8e-16 58.6 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family FeS PF04060.8 gi|116754588|ref|YP_843706.1| - 1.3e-13 50.2 0.7 2.2e-13 49.4 0.5 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.2 gi|116754588|ref|YP_843706.1| - 2.9e-07 30.1 0.0 2e-06 27.4 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|116754588|ref|YP_843706.1| - 0.00034 20.2 0.1 0.00034 20.2 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family ArsR PF09824.4 gi|116754588|ref|YP_843706.1| - 0.0078 15.5 0.3 0.016 14.5 0.1 1.6 2 0 0 2 2 2 1 ArsR transcriptional regulator YbaB_DNA_bd PF02575.11 gi|116754588|ref|YP_843706.1| - 0.013 15.3 0.1 0.031 14.1 0.0 1.6 1 0 0 1 1 1 0 YbaB/EbfC DNA-binding family YhfH PF14149.1 gi|116754588|ref|YP_843706.1| - 0.014 15.1 0.1 0.026 14.3 0.1 1.4 1 0 0 1 1 1 0 YhfH-like protein HTH_12 PF08461.5 gi|116754588|ref|YP_843706.1| - 0.019 14.6 0.4 0.073 12.8 0.0 2.2 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|116754588|ref|YP_843706.1| - 0.022 14.5 0.1 0.064 13.0 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DUF2513 PF10711.4 gi|116754588|ref|YP_843706.1| - 0.028 14.5 0.1 0.085 12.9 0.0 1.8 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) HemN_C PF06969.11 gi|116754588|ref|YP_843706.1| - 0.056 13.5 0.2 0.15 12.1 0.1 1.8 2 0 0 2 2 2 0 HemN C-terminal domain SBF PF01758.11 gi|116754589|ref|YP_843707.1| - 5.3e-61 205.3 13.4 5.3e-61 205.3 9.3 2.4 3 0 0 3 3 3 1 Sodium Bile acid symporter family KASH PF10541.4 gi|116754589|ref|YP_843707.1| - 1.9 8.4 4.8 0.56 10.0 0.2 2.6 2 0 0 2 2 2 0 Nuclear envelope localisation domain Rhodanese PF00581.15 gi|116754590|ref|YP_843708.1| - 6.1e-19 68.4 0.0 3e-09 37.1 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain HTH_20 PF12840.2 gi|116754591|ref|YP_843709.1| - 6.3e-18 64.3 0.1 1.7e-17 62.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|116754591|ref|YP_843709.1| - 1.4e-17 63.0 0.1 3.1e-17 61.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|116754591|ref|YP_843709.1| - 1.7e-05 24.4 0.0 5.1e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF742 PF05331.6 gi|116754591|ref|YP_843709.1| - 0.0021 17.6 0.0 0.0025 17.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_45 PF14947.1 gi|116754591|ref|YP_843709.1| - 0.028 14.2 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.1 gi|116754591|ref|YP_843709.1| - 0.037 14.0 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|116754591|ref|YP_843709.1| - 0.064 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.5 gi|116754591|ref|YP_843709.1| - 0.067 12.7 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain PaaX PF07848.7 gi|116754591|ref|YP_843709.1| - 0.077 13.0 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein Rrf2 PF02082.15 gi|116754591|ref|YP_843709.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|116754591|ref|YP_843709.1| - 0.11 11.8 0.1 0.64 9.4 0.1 2.3 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding FliC PF12445.3 gi|116754592|ref|YP_843710.1| - 0.044 13.9 0.6 7 6.7 0.0 2.7 3 0 0 3 3 3 0 Flagellin protein DUF342 PF03961.8 gi|116754592|ref|YP_843710.1| - 0.046 12.1 1.0 0.059 11.7 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Ribosomal_S8e PF01201.17 gi|116754593|ref|YP_843711.1| - 3e-40 137.3 1.2 3.3e-40 137.2 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e CarboxypepD_reg PF13620.1 gi|116754594|ref|YP_843712.1| - 1.2e-08 34.9 0.6 0.0044 17.0 0.1 2.3 1 1 1 2 2 2 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|116754594|ref|YP_843712.1| - 0.0039 17.0 1.1 0.64 9.9 0.1 2.4 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) CpeS PF09367.5 gi|116754594|ref|YP_843712.1| - 0.025 14.4 0.0 6.4 6.6 0.0 2.2 1 1 1 2 2 2 0 CpeS-like protein HALZ PF02183.13 gi|116754594|ref|YP_843712.1| - 0.03 14.0 2.6 3.6 7.3 0.1 2.2 2 0 0 2 2 2 0 Homeobox associated leucine zipper DUF1326 PF07040.6 gi|116754594|ref|YP_843712.1| - 0.16 11.7 0.6 15 5.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1326) EF-hand_5 PF13202.1 gi|116754595|ref|YP_843713.1| - 0.04 13.2 1.7 90 2.6 0.0 4.0 4 0 0 4 4 4 0 EF hand Dodecin PF07311.7 gi|116754596|ref|YP_843714.1| - 5.9e-27 93.4 0.6 7e-27 93.2 0.4 1.1 1 0 0 1 1 1 1 Dodecin ApbE PF02424.10 gi|116754597|ref|YP_843715.1| - 2.4e-20 72.9 0.8 2.8e-20 72.6 0.6 1.2 1 0 0 1 1 1 1 ApbE family YorP PF09629.5 gi|116754597|ref|YP_843715.1| - 0.086 12.8 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 YorP protein HMGL-like PF00682.14 gi|116754598|ref|YP_843716.1| - 1.7e-72 243.9 4.1 2e-72 243.6 1.1 2.0 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|116754598|ref|YP_843716.1| - 2.2e-32 111.6 2.5 5e-32 110.4 1.7 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF666 PF05006.7 gi|116754598|ref|YP_843716.1| - 0.096 12.6 0.3 0.57 10.1 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF666) TatD_DNase PF01026.16 gi|116754599|ref|YP_843717.1| - 4e-66 222.8 0.0 4.5e-66 222.6 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_4 PF13147.1 gi|116754599|ref|YP_843717.1| - 0.007 16.4 0.0 0.8 9.6 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase FluMu_gp41 PF10109.4 gi|116754599|ref|YP_843717.1| - 0.025 14.4 0.0 2.2 8.2 0.0 2.3 2 0 0 2 2 2 0 Mu-like prophage FluMu protein gp41 NYN PF01936.13 gi|116754600|ref|YP_843718.1| - 1.5e-22 80.4 0.0 2e-22 80.0 0.0 1.1 1 0 0 1 1 1 1 NYN domain Rhomboid PF01694.17 gi|116754601|ref|YP_843719.1| - 5.8e-30 104.2 15.8 5.8e-30 104.2 11.0 2.0 1 1 1 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|116754601|ref|YP_843719.1| - 2.2e-06 27.9 0.4 2.2e-06 27.9 0.3 1.7 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) GTP_EFTU PF00009.22 gi|116754602|ref|YP_843720.1| - 7.9e-34 116.7 0.0 6.2e-33 113.8 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|116754602|ref|YP_843720.1| - 1.7e-20 72.9 0.2 4.9e-20 71.4 0.2 1.8 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|116754602|ref|YP_843720.1| - 2.5e-15 55.8 1.0 9e-15 54.0 0.7 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|116754602|ref|YP_843720.1| - 4.1e-09 36.4 6.5 9.8e-09 35.2 0.1 3.4 2 1 1 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|116754602|ref|YP_843720.1| - 1.7e-06 27.9 0.0 9.2e-06 25.5 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase Miro PF08477.8 gi|116754602|ref|YP_843720.1| - 0.0044 17.4 0.0 0.015 15.7 0.0 1.9 1 0 0 1 1 1 1 Miro-like protein PduV-EutP PF10662.4 gi|116754602|ref|YP_843720.1| - 0.013 15.0 0.4 0.23 10.9 0.0 3.1 4 0 0 4 4 4 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|116754602|ref|YP_843720.1| - 0.065 12.9 0.1 0.36 10.5 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Dynamin_N PF00350.18 gi|116754602|ref|YP_843720.1| - 0.071 12.9 0.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 0 Dynamin family Adenylsucc_synt PF00709.16 gi|116754604|ref|YP_843722.1| - 5.3e-158 526.1 0.0 6e-158 525.9 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Pribosyltran PF00156.22 gi|116754605|ref|YP_843723.1| - 3e-10 39.8 0.1 4e-10 39.5 0.1 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|116754605|ref|YP_843723.1| - 0.013 14.7 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|116754605|ref|YP_843723.1| - 0.029 13.6 0.0 0.048 12.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Aminotran_4 PF01063.14 gi|116754606|ref|YP_843724.1| - 1.6e-51 174.9 0.0 1.9e-51 174.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV DUF3596 PF12167.3 gi|116754606|ref|YP_843724.1| - 0.11 12.0 0.0 0.32 10.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3596) DMRL_synthase PF00885.14 gi|116754607|ref|YP_843725.1| - 1.8e-36 124.9 0.1 2.1e-36 124.7 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Metallophos_3 PF14582.1 gi|116754607|ref|YP_843725.1| - 0.16 11.0 0.7 5 6.2 0.1 2.2 2 1 1 3 3 3 0 Metallophosphoesterase, calcineurin superfamily Aminotran_1_2 PF00155.16 gi|116754608|ref|YP_843726.1| - 1.4e-64 218.3 0.0 1.7e-64 218.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|116754608|ref|YP_843726.1| - 2e-09 37.0 0.1 3.1e-09 36.3 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|116754608|ref|YP_843726.1| - 2.6e-05 22.6 0.0 3.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|116754608|ref|YP_843726.1| - 0.00038 19.7 0.0 0.00061 19.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Exonuc_VII_L PF02601.10 gi|116754609|ref|YP_843727.1| - 3e-70 236.9 0.0 7.1e-64 215.9 0.0 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|116754609|ref|YP_843727.1| - 1.6e-26 92.0 0.0 2.7e-26 91.3 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|116754609|ref|YP_843727.1| - 2.1e-08 33.8 0.0 3.9e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4147 PF13660.1 gi|116754609|ref|YP_843727.1| - 0.013 14.6 0.8 0.049 12.7 0.1 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4147) DeoC PF01791.4 gi|116754612|ref|YP_843730.1| - 3.1e-58 196.8 0.0 3.6e-58 196.6 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase PEP_mutase PF13714.1 gi|116754612|ref|YP_843730.1| - 0.031 13.4 0.9 3.4 6.8 0.0 3.4 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase OMPdecase PF00215.19 gi|116754612|ref|YP_843730.1| - 0.051 12.9 0.0 0.14 11.5 0.0 1.8 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF561 PF04481.7 gi|116754612|ref|YP_843730.1| - 0.075 11.9 0.1 7.5 5.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF561) CbiA PF01656.18 gi|116754613|ref|YP_843731.1| - 3.9e-16 59.0 0.0 4.8e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|116754613|ref|YP_843731.1| - 0.00048 19.7 0.1 0.0007 19.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain TRC8_N PF13705.1 gi|116754613|ref|YP_843731.1| - 0.12 10.8 0.0 0.15 10.6 0.0 1.0 1 0 0 1 1 1 0 TRC8 N-terminal domain Ribonuc_red_lgC PF02867.10 gi|116754614|ref|YP_843732.1| - 8.7e-152 506.4 0.0 2.4e-106 356.4 0.0 2.4 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|116754614|ref|YP_843732.1| - 1.1e-25 89.1 0.0 2.9e-25 87.8 0.0 1.8 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|116754614|ref|YP_843732.1| - 1.9e-25 89.1 1.1 5.6e-25 87.6 0.8 1.9 1 0 0 1 1 1 1 ATP cone domain NRDD PF13597.1 gi|116754614|ref|YP_843732.1| - 0.0022 16.1 0.0 0.0032 15.5 0.0 1.2 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase HHH_8 PF14716.1 gi|116754615|ref|YP_843733.1| - 5.7e-26 90.4 3.2 1.7e-22 79.3 0.6 3.7 2 1 1 3 3 3 2 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.1 gi|116754615|ref|YP_843733.1| - 2.1e-23 81.7 0.1 5.8e-23 80.3 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb PHP PF02811.14 gi|116754615|ref|YP_843733.1| - 1e-15 57.9 0.1 1.5e-14 54.1 0.0 2.6 2 1 1 3 3 3 1 PHP domain HHH_5 PF14520.1 gi|116754615|ref|YP_843733.1| - 3.1e-14 52.8 0.8 1.5e-07 31.5 0.0 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix domain DNA_pol_B_palm PF14792.1 gi|116754615|ref|YP_843733.1| - 1.2e-09 38.2 0.3 4.7e-09 36.2 0.0 2.1 2 0 0 2 2 2 1 DNA polymerase beta palm HHH PF00633.18 gi|116754615|ref|YP_843733.1| - 8.6e-09 34.6 0.9 0.0039 16.8 0.0 3.7 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|116754615|ref|YP_843733.1| - 1.6e-05 24.7 1.1 0.19 11.7 0.0 4.4 4 0 0 4 4 4 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|116754615|ref|YP_843733.1| - 0.0019 18.0 0.0 0.13 12.1 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|116754615|ref|YP_843733.1| - 0.0041 17.0 0.0 0.54 10.2 0.0 2.7 1 1 1 2 2 2 1 Pathogenicity locus IMS_HHH PF11798.3 gi|116754615|ref|YP_843733.1| - 0.0044 16.9 0.3 2.1 8.5 0.0 3.6 3 0 0 3 3 3 1 IMS family HHH motif NTP_transf_2 PF01909.18 gi|116754615|ref|YP_843733.1| - 0.0058 16.9 0.1 0.019 15.3 0.1 2.0 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF3701 PF12482.3 gi|116754615|ref|YP_843733.1| - 0.013 15.2 0.2 7.7 6.3 0.1 2.8 2 0 0 2 2 2 0 Phage integrase protein HRDC PF00570.18 gi|116754615|ref|YP_843733.1| - 0.018 14.7 0.1 1.6 8.4 0.0 2.9 3 0 0 3 3 2 0 HRDC domain DUF1992 PF09350.5 gi|116754615|ref|YP_843733.1| - 0.044 13.6 0.0 0.35 10.7 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1992) DNA_pol_lambd_f PF10391.4 gi|116754615|ref|YP_843733.1| - 0.071 12.6 0.0 0.64 9.6 0.0 2.5 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda Pilin_PilA PF14245.1 gi|116754617|ref|YP_843735.1| - 0.12 12.8 1.6 0.16 12.4 1.1 1.3 1 1 0 1 1 1 0 Type IV pilin PilA GTP_EFTU PF00009.22 gi|116754619|ref|YP_843737.1| - 3.4e-42 144.0 0.1 5.4e-42 143.3 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|116754619|ref|YP_843737.1| - 8.3e-30 102.6 1.6 1.2e-29 102.1 0.1 2.0 2 0 0 2 2 2 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|116754619|ref|YP_843737.1| - 9.3e-08 32.0 2.1 3.1e-07 30.3 1.4 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|116754619|ref|YP_843737.1| - 0.0092 15.9 0.0 0.026 14.4 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase Nop10p PF04135.7 gi|116754619|ref|YP_843737.1| - 0.01 15.5 0.4 0.018 14.7 0.3 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family PolC_DP2 PF03833.8 gi|116754619|ref|YP_843737.1| - 0.017 12.8 0.2 0.024 12.3 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 PduV-EutP PF10662.4 gi|116754619|ref|YP_843737.1| - 0.037 13.5 2.4 1.2 8.6 0.0 2.9 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Ras PF00071.17 gi|116754619|ref|YP_843737.1| - 0.086 12.2 0.3 0.22 10.8 0.1 1.7 2 0 0 2 2 2 0 Ras family zf-ribbon_3 PF13248.1 gi|116754619|ref|YP_843737.1| - 7.6 5.8 10.5 2.2 7.6 5.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Fcf1 PF04900.7 gi|116754620|ref|YP_843738.1| - 1.9e-07 31.1 0.0 2.5e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN PF01850.16 gi|116754620|ref|YP_843738.1| - 0.00098 19.4 0.1 0.0042 17.4 0.0 1.8 1 1 0 1 1 1 1 PIN domain PIN_4 PF13638.1 gi|116754620|ref|YP_843738.1| - 0.024 14.7 0.0 0.032 14.3 0.0 1.4 1 1 0 1 1 1 0 PIN domain SHS2_Rpb7-N PF03876.12 gi|116754621|ref|YP_843739.1| - 2.8e-19 68.9 0.1 6e-19 67.9 0.1 1.6 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|116754621|ref|YP_843739.1| - 1.1e-13 51.0 0.9 2.3e-13 50.0 0.2 1.9 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|116754621|ref|YP_843739.1| - 0.00067 19.8 0.6 0.0028 17.8 0.4 2.0 1 1 0 1 1 1 1 RNA polymerase III subunit Rpc25 Spt4 PF06093.8 gi|116754622|ref|YP_843740.1| - 1.2e-12 47.4 0.0 1.5e-12 47.1 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.10 gi|116754622|ref|YP_843740.1| - 0.022 14.1 1.9 0.03 13.7 1.3 1.2 1 0 0 1 1 1 0 RecR protein TF_Zn_Ribbon PF08271.7 gi|116754622|ref|YP_843740.1| - 0.049 12.9 0.2 0.16 11.2 0.0 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|116754622|ref|YP_843740.1| - 0.069 12.3 1.1 0.56 9.4 0.1 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|116754622|ref|YP_843740.1| - 0.18 11.5 1.6 0.22 11.2 1.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|116754622|ref|YP_843740.1| - 0.49 10.4 3.0 11 6.0 2.0 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|116754622|ref|YP_843740.1| - 1.5 8.7 4.3 8.8 6.2 3.0 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF359 PF04019.7 gi|116754623|ref|YP_843741.1| - 3.2e-41 139.4 0.0 4.2e-41 139.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.14 gi|116754624|ref|YP_843742.1| - 3.5e-20 71.5 0.1 4.1e-20 71.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.14 gi|116754625|ref|YP_843743.1| - 9.8e-19 66.9 1.4 1.1e-18 66.7 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a IBR PF01485.16 gi|116754625|ref|YP_843743.1| - 0.00051 19.8 0.2 0.00055 19.7 0.2 1.1 1 0 0 1 1 1 1 IBR domain DZR PF12773.2 gi|116754625|ref|YP_843743.1| - 0.00071 19.3 0.6 0.00087 19.0 0.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|116754625|ref|YP_843743.1| - 0.0014 18.4 1.0 0.0016 18.1 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e zf-NADH-PPase PF09297.6 gi|116754625|ref|YP_843743.1| - 0.0014 18.0 2.9 0.0021 17.5 2.0 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DUF2082 PF09855.4 gi|116754625|ref|YP_843743.1| - 0.0038 17.0 2.1 0.11 12.4 0.3 2.2 1 1 1 2 2 2 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF1451 PF07295.6 gi|116754625|ref|YP_843743.1| - 0.0069 16.1 0.7 0.007 16.1 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1451) GCC2_GCC3 PF07699.8 gi|116754625|ref|YP_843743.1| - 0.013 15.0 0.8 0.017 14.6 0.6 1.2 1 0 0 1 1 1 0 GCC2 and GCC3 OrfB_Zn_ribbon PF07282.6 gi|116754625|ref|YP_843743.1| - 0.03 13.9 0.9 0.046 13.3 0.6 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|116754625|ref|YP_843743.1| - 0.037 13.7 0.3 0.037 13.7 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|116754625|ref|YP_843743.1| - 0.041 13.7 4.6 0.08 12.7 2.6 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain GFA PF04828.9 gi|116754625|ref|YP_843743.1| - 0.045 13.6 1.3 0.22 11.5 0.0 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RNA_POL_M_15KD PF02150.11 gi|116754625|ref|YP_843743.1| - 0.057 13.1 0.6 0.12 12.0 0.4 1.4 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-RING_3 PF14369.1 gi|116754625|ref|YP_843743.1| - 0.058 13.4 3.5 0.31 11.0 0.3 2.1 1 1 1 2 2 2 0 zinc-finger Auto_anti-p27 PF06677.7 gi|116754625|ref|YP_843743.1| - 0.071 12.8 0.6 0.091 12.5 0.4 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|116754625|ref|YP_843743.1| - 0.094 11.9 5.4 0.77 9.0 0.5 2.0 1 1 1 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|116754625|ref|YP_843743.1| - 0.094 12.1 1.7 0.37 10.3 1.2 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|116754625|ref|YP_843743.1| - 0.11 11.8 3.4 0.17 11.2 2.3 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|116754625|ref|YP_843743.1| - 0.14 12.4 2.4 0.2 12.0 1.7 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.8 gi|116754625|ref|YP_843743.1| - 0.14 11.6 2.6 0.24 10.9 1.6 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|116754625|ref|YP_843743.1| - 0.2 11.7 2.6 3.1 7.9 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|116754625|ref|YP_843743.1| - 0.29 10.8 5.2 2.8 7.6 3.5 2.1 1 1 1 2 2 2 0 Nudix N-terminal DUF1936 PF09151.5 gi|116754625|ref|YP_843743.1| - 0.47 10.0 4.1 1.8 8.1 2.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF1936) zinc_ribbon_2 PF13240.1 gi|116754625|ref|YP_843743.1| - 0.68 9.5 6.0 1.4 8.5 0.7 2.2 1 1 1 2 2 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|116754625|ref|YP_843743.1| - 0.71 9.8 3.5 8.5 6.4 0.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-CCHC_5 PF14787.1 gi|116754625|ref|YP_843743.1| - 0.79 9.2 4.2 0.49 9.9 0.2 2.1 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Fic PF02661.13 gi|116754626|ref|YP_843744.1| - 1.1e-07 32.4 0.2 3.5e-06 27.6 0.0 2.0 1 1 1 2 2 2 2 Fic/DOC family Exosortase_EpsH PF09721.5 gi|116754627|ref|YP_843745.1| - 7e-37 127.0 23.9 7.8e-37 126.9 16.6 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) PS_Dcarbxylase PF02666.10 gi|116754628|ref|YP_843746.1| - 8.5e-27 93.7 0.2 7.7e-23 80.8 0.1 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase RnfC_N PF13375.1 gi|116754628|ref|YP_843746.1| - 0.0085 15.8 0.0 0.041 13.5 0.0 2.0 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.17 gi|116754628|ref|YP_843746.1| - 0.022 14.8 0.0 4.9 7.2 0.0 3.1 1 1 2 3 3 3 0 Peptidase family M23 Biotin_lipoyl PF00364.17 gi|116754628|ref|YP_843746.1| - 0.14 11.8 0.0 3.2 7.4 0.0 2.7 3 1 0 3 3 3 0 Biotin-requiring enzyme CDP-OH_P_transf PF01066.16 gi|116754629|ref|YP_843747.1| - 1.5e-09 38.0 15.1 5.4e-08 33.0 10.5 3.0 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF381 PF04038.7 gi|116754630|ref|YP_843748.1| - 5.1e-24 84.0 0.3 6.9e-24 83.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|116754630|ref|YP_843748.1| - 2.7e-23 81.1 0.1 4.1e-23 80.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF372) GPW_gp25 PF04965.9 gi|116754630|ref|YP_843748.1| - 0.034 13.6 0.0 0.13 11.7 0.0 1.8 1 1 1 2 2 2 0 Gene 25-like lysozyme FBPase_3 PF01950.11 gi|116754631|ref|YP_843749.1| - 3.6e-181 601.9 0.0 4.2e-181 601.7 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Clathrin PF00637.15 gi|116754632|ref|YP_843750.1| - 0.0071 15.9 0.0 0.027 14.0 0.0 1.9 1 1 1 2 2 2 1 Region in Clathrin and VPS TPR_14 PF13428.1 gi|116754632|ref|YP_843750.1| - 0.24 12.1 2.8 6 7.7 0.0 3.9 1 1 4 5 5 5 0 Tetratricopeptide repeat SpoIIE PF07228.7 gi|116754633|ref|YP_843751.1| - 8.5e-24 84.3 0.0 1.4e-23 83.5 0.0 1.3 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) HAMP PF00672.20 gi|116754633|ref|YP_843751.1| - 0.0044 17.1 0.3 0.0044 17.1 0.2 3.0 3 0 0 3 3 3 1 HAMP domain Cache_1 PF02743.13 gi|116754633|ref|YP_843751.1| - 0.042 13.3 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 Cache domain Fer4_15 PF13459.1 gi|116754634|ref|YP_843752.1| - 7e-06 26.5 0.5 7e-06 26.5 0.4 1.9 2 0 0 2 2 1 1 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|116754634|ref|YP_843752.1| - 0.00039 20.1 1.7 0.00039 20.1 1.2 2.4 3 0 0 3 3 1 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|116754634|ref|YP_843752.1| - 0.00044 20.5 2.7 0.0027 18.0 1.9 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|116754634|ref|YP_843752.1| - 0.00083 18.8 13.8 0.0015 18.0 1.2 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116754634|ref|YP_843752.1| - 0.0015 18.8 5.3 0.13 12.7 0.1 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|116754634|ref|YP_843752.1| - 0.0046 16.7 1.6 0.0046 16.7 1.1 3.8 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|116754634|ref|YP_843752.1| - 0.031 14.0 8.3 0.036 13.8 0.3 3.1 2 1 0 2 2 2 0 4Fe-4S dicluster domain zf-FCS PF06467.9 gi|116754634|ref|YP_843752.1| - 0.067 12.8 1.9 1.3 8.6 0.0 2.9 3 0 0 3 3 3 0 MYM-type Zinc finger with FCS sequence motif Fer4_16 PF13484.1 gi|116754634|ref|YP_843752.1| - 0.14 12.9 4.4 3.3 8.5 0.4 2.7 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain zf-C2H2 PF00096.21 gi|116754634|ref|YP_843752.1| - 0.27 11.6 1.4 5 7.6 0.0 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF866 PF05907.8 gi|116754634|ref|YP_843752.1| - 0.3 10.5 1.4 0.75 9.2 0.0 1.9 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF866) zinc_ribbon_2 PF13240.1 gi|116754634|ref|YP_843752.1| - 1 8.9 3.9 22 4.6 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|116754634|ref|YP_843752.1| - 1 9.1 0.1 1 9.1 0.1 3.1 3 0 0 3 3 3 0 zinc-finger of a C2HC-type Fer4_19 PF06902.6 gi|116754634|ref|YP_843752.1| - 1.3 8.8 5.7 3 7.7 1.2 3.3 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_18 PF13746.1 gi|116754634|ref|YP_843752.1| - 1.5 9.3 6.5 5.5 7.4 0.3 3.2 3 1 0 3 3 3 0 4Fe-4S dicluster domain HypA PF01155.14 gi|116754634|ref|YP_843752.1| - 1.5 8.5 4.1 1.1 9.0 0.4 2.0 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|116754634|ref|YP_843752.1| - 2.3 7.9 0.0 2.3 7.9 0.0 3.2 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Fer4_21 PF14697.1 gi|116754634|ref|YP_843752.1| - 2.9 7.8 10.9 0.2 11.5 2.6 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Prok-RING_1 PF14446.1 gi|116754634|ref|YP_843752.1| - 3.4 7.4 0.0 3.4 7.4 0.0 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Fer4_6 PF12837.2 gi|116754635|ref|YP_843753.1| - 4.5e-15 54.7 31.2 1.2e-08 34.4 1.5 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.22 gi|116754635|ref|YP_843753.1| - 4.8e-14 51.2 32.1 8.2e-10 37.8 1.5 5.2 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_11 PF13247.1 gi|116754635|ref|YP_843753.1| - 9.8e-13 47.8 14.8 1.2e-12 47.5 6.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754635|ref|YP_843753.1| - 2.6e-12 45.8 10.7 2.6e-07 30.1 1.1 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116754635|ref|YP_843753.1| - 3.5e-11 43.3 28.4 1.4e-05 25.3 7.9 3.6 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754635|ref|YP_843753.1| - 2.2e-09 36.9 26.0 4.9e-05 23.0 5.3 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|116754635|ref|YP_843753.1| - 2.4e-06 27.3 37.1 0.00031 20.8 1.7 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|116754635|ref|YP_843753.1| - 4.3e-06 27.3 21.7 0.0069 17.1 2.7 4.4 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|116754635|ref|YP_843753.1| - 1.8e-05 24.5 28.1 0.0086 15.9 6.4 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754635|ref|YP_843753.1| - 0.00019 21.6 32.0 0.008 16.4 7.7 3.5 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116754635|ref|YP_843753.1| - 0.00054 20.4 18.7 0.018 15.6 0.6 3.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|116754635|ref|YP_843753.1| - 0.0009 19.6 41.9 0.0021 18.5 4.1 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|116754635|ref|YP_843753.1| - 0.011 15.7 29.3 0.045 13.7 14.5 3.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754635|ref|YP_843753.1| - 0.013 15.8 10.1 0.041 14.2 0.9 4.1 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|116754635|ref|YP_843753.1| - 0.14 12.5 1.0 0.14 12.5 0.7 3.5 3 1 0 3 3 3 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|116754636|ref|YP_843754.1| - 1.2e-79 268.0 0.0 1.5e-79 267.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|116754636|ref|YP_843754.1| - 6.8e-25 87.0 0.0 1.3e-24 86.1 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|116754636|ref|YP_843754.1| - 8.9e-13 47.8 0.3 2.2e-12 46.5 0.2 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.1 gi|116754637|ref|YP_843755.1| - 2e-21 75.7 14.3 3e-20 71.9 6.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116754637|ref|YP_843755.1| - 1.7e-14 53.9 25.0 7e-07 29.5 6.5 2.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754637|ref|YP_843755.1| - 6.1e-13 48.8 22.6 2.1e-06 27.9 3.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|116754637|ref|YP_843755.1| - 2.5e-12 46.0 36.1 2.5e-05 23.9 1.9 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|116754637|ref|YP_843755.1| - 8.5e-10 38.2 28.3 0.00026 20.7 6.4 3.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|116754637|ref|YP_843755.1| - 8.6e-10 37.8 39.2 0.00012 21.5 1.9 5.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|116754637|ref|YP_843755.1| - 8.6e-07 28.7 36.3 0.016 15.4 2.5 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|116754637|ref|YP_843755.1| - 6.8e-06 26.7 23.0 0.11 13.3 0.6 4.3 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|116754637|ref|YP_843755.1| - 1e-05 25.1 39.5 0.001 18.8 2.2 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|116754637|ref|YP_843755.1| - 0.00031 21.0 44.7 0.0093 16.4 3.4 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116754637|ref|YP_843755.1| - 0.0036 17.1 31.5 0.13 12.0 7.6 3.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116754637|ref|YP_843755.1| - 0.0057 16.6 27.6 0.051 13.5 6.6 3.4 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754637|ref|YP_843755.1| - 0.0071 16.6 26.6 3.9 7.8 8.4 4.1 1 1 2 3 3 3 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|116754637|ref|YP_843755.1| - 0.0086 15.6 19.3 0.031 13.9 0.2 3.6 2 1 2 4 4 4 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GF_recep_IV PF14843.1 gi|116754637|ref|YP_843755.1| - 0.094 12.3 19.5 0.037 13.6 3.5 3.0 2 1 1 3 3 3 0 Growth factor receptor domain IV Fer4_15 PF13459.1 gi|116754637|ref|YP_843755.1| - 6.3 7.4 24.3 2.2 8.9 0.1 3.5 2 1 1 3 3 3 0 4Fe-4S single cluster domain Prismane PF03063.15 gi|116754638|ref|YP_843756.1| - 2.2e-182 607.0 0.0 2.6e-182 606.8 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family DUF2111 PF09884.4 gi|116754639|ref|YP_843757.1| - 3.1e-33 113.4 1.0 4.1e-33 113.0 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Acetyltransf_1 PF00583.19 gi|116754640|ref|YP_843758.1| - 3.6e-18 65.3 0.2 5.1e-18 64.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|116754640|ref|YP_843758.1| - 7.3e-13 48.6 0.1 9e-13 48.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|116754640|ref|YP_843758.1| - 1.4e-09 38.0 0.0 1.9e-09 37.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|116754640|ref|YP_843758.1| - 4e-09 36.0 0.0 5.2e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|116754640|ref|YP_843758.1| - 3.8e-07 29.9 0.1 3.8e-06 26.7 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|116754640|ref|YP_843758.1| - 5e-07 29.7 0.2 6.9e-07 29.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|116754640|ref|YP_843758.1| - 3.1e-05 23.8 0.1 8.5e-05 22.4 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|116754640|ref|YP_843758.1| - 0.00032 20.2 0.0 0.00039 20.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|116754640|ref|YP_843758.1| - 0.0067 16.1 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_3 PF13302.1 gi|116754640|ref|YP_843758.1| - 0.027 14.6 0.1 0.07 13.2 0.0 1.9 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|116754640|ref|YP_843758.1| - 0.034 14.0 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|116754640|ref|YP_843758.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Lactamase_B PF00753.22 gi|116754642|ref|YP_843760.1| - 5.2e-22 78.4 6.8 6.8e-22 78.0 4.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|116754642|ref|YP_843760.1| - 7.9e-08 32.0 0.4 1.1e-07 31.6 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RecX PF02631.11 gi|116754642|ref|YP_843760.1| - 0.14 12.3 0.0 0.89 9.7 0.0 2.1 3 0 0 3 3 3 0 RecX family Pox_A9 PF04835.7 gi|116754643|ref|YP_843761.1| - 0.04 13.8 0.4 0.04 13.8 0.3 2.0 2 0 0 2 2 2 0 A9 protein conserved region BofA PF07441.6 gi|116754643|ref|YP_843761.1| - 0.1 12.5 17.6 0.15 12.0 12.2 1.2 1 0 0 1 1 1 0 SigmaK-factor processing regulatory protein BofA Aa_trans PF01490.13 gi|116754643|ref|YP_843761.1| - 3.3 6.0 10.5 1.5 7.2 6.1 1.3 1 1 0 1 1 1 0 Transmembrane amino acid transporter protein DUF1212 PF06738.7 gi|116754643|ref|YP_843761.1| - 7.4 5.9 9.9 1.9 7.9 4.6 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1212) CitMHS PF03600.11 gi|116754644|ref|YP_843762.1| - 2.1e-31 108.7 31.7 5.6e-30 104.1 15.8 2.0 1 1 1 2 2 2 2 Citrate transporter DUF1938 PF09153.5 gi|116754645|ref|YP_843763.1| - 0.088 12.6 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1938) A2M_N PF01835.14 gi|116754646|ref|YP_843764.1| - 0.027 14.7 0.0 0.13 12.5 0.0 1.9 1 1 1 2 2 2 0 MG2 domain DUF4405 PF14358.1 gi|116754646|ref|YP_843764.1| - 0.039 14.0 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4405) DUF2648 PF10855.3 gi|116754647|ref|YP_843765.1| - 0.28 10.6 1.6 0.55 9.6 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2648) GATase PF00117.23 gi|116754648|ref|YP_843766.1| - 2.5e-09 36.8 0.0 3.4e-09 36.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I ATP_bind_4 PF01902.12 gi|116754649|ref|YP_843767.1| - 2.2e-65 220.1 0.0 2.5e-65 219.9 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|116754649|ref|YP_843767.1| - 0.00046 19.7 0.0 0.00061 19.3 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase CM_2 PF01817.16 gi|116754650|ref|YP_843768.1| - 3e-18 65.6 0.4 3.4e-18 65.5 0.3 1.0 1 0 0 1 1 1 1 Chorismate mutase type II DUF2560 PF10834.3 gi|116754650|ref|YP_843768.1| - 0.086 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2560) GHMP_kinases_N PF00288.21 gi|116754651|ref|YP_843769.1| - 2.7e-10 40.1 2.3 2.7e-10 40.1 1.6 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|116754651|ref|YP_843769.1| - 0.00017 21.7 1.0 0.00048 20.2 0.2 2.2 2 1 0 2 2 2 1 GHMP kinases C terminal RNA_bind_2 PF10133.4 gi|116754653|ref|YP_843771.1| - 3.4e-21 75.0 4.1 3.7e-21 74.8 2.8 1.0 1 0 0 1 1 1 1 Predicted RNA-binding protein Cas_Csx9 PF09658.5 gi|116754653|ref|YP_843771.1| - 0.086 11.6 0.0 0.089 11.5 0.0 1.0 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csx9) Prefoldin_2 PF01920.15 gi|116754654|ref|YP_843772.1| - 1.8e-22 79.0 16.9 2e-22 78.9 11.7 1.0 1 0 0 1 1 1 1 Prefoldin subunit Sipho_Gp157 PF05565.6 gi|116754654|ref|YP_843772.1| - 0.0098 15.4 2.8 0.28 10.7 0.1 2.0 2 0 0 2 2 2 1 Siphovirus Gp157 Pet127 PF08634.5 gi|116754654|ref|YP_843772.1| - 0.01 15.0 0.9 0.012 14.8 0.6 1.0 1 0 0 1 1 1 0 Mitochondrial protein Pet127 Fib_alpha PF08702.5 gi|116754654|ref|YP_843772.1| - 0.026 14.6 4.8 0.45 10.6 0.1 2.2 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF3280 PF11684.3 gi|116754654|ref|YP_843772.1| - 0.028 14.6 4.5 2.1 8.5 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2380) DUF4559 PF15112.1 gi|116754654|ref|YP_843772.1| - 0.1 11.7 4.2 0.12 11.5 2.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) CASP_C PF08172.7 gi|116754654|ref|YP_843772.1| - 0.11 11.5 3.9 0.15 11.0 2.7 1.1 1 0 0 1 1 1 0 CASP C terminal DUF59 PF01883.14 gi|116754654|ref|YP_843772.1| - 0.13 12.2 0.9 0.55 10.2 0.2 2.4 2 1 1 3 3 3 0 Domain of unknown function DUF59 TPR_MLP1_2 PF07926.7 gi|116754654|ref|YP_843772.1| - 0.16 11.7 17.6 0.4 10.4 1.0 2.0 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein FlgN PF05130.7 gi|116754654|ref|YP_843772.1| - 0.26 11.5 11.1 0.4 10.9 7.7 1.2 1 0 0 1 1 1 0 FlgN protein AKNA PF12443.3 gi|116754654|ref|YP_843772.1| - 0.28 11.2 9.3 0.4 10.7 6.4 1.3 1 0 0 1 1 1 0 AT-hook-containing transcription factor TINF2_N PF14973.1 gi|116754654|ref|YP_843772.1| - 0.29 11.2 4.9 0.11 12.6 0.5 1.9 1 1 1 2 2 2 0 TERF1-interacting nuclear factor 2 N-terminus HisKA_3 PF07730.8 gi|116754654|ref|YP_843772.1| - 0.36 11.2 8.7 32 4.9 3.5 3.0 1 1 1 2 2 2 0 Histidine kinase DUF1706 PF08020.6 gi|116754654|ref|YP_843772.1| - 0.42 10.0 5.6 0.7 9.3 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1706) DivIC PF04977.10 gi|116754654|ref|YP_843772.1| - 0.51 9.8 13.5 0.047 13.1 2.6 2.2 2 0 0 2 2 2 0 Septum formation initiator SRP54 PF00448.17 gi|116754654|ref|YP_843772.1| - 0.98 8.8 3.9 1.1 8.6 2.7 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF4200 PF13863.1 gi|116754654|ref|YP_843772.1| - 1.2 9.1 11.9 0.28 11.1 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF4140 PF13600.1 gi|116754654|ref|YP_843772.1| - 1.3 9.5 9.9 8 6.9 0.2 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Seryl_tRNA_N PF02403.17 gi|116754654|ref|YP_843772.1| - 1.6 8.7 13.3 4.8 7.2 0.5 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Spc24 PF08286.6 gi|116754654|ref|YP_843772.1| - 2 8.0 10.2 1.9 8.2 2.6 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF948 PF06103.6 gi|116754654|ref|YP_843772.1| - 2.3 8.1 8.1 1.6 8.6 0.8 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) bZIP_Maf PF03131.12 gi|116754654|ref|YP_843772.1| - 3.5 7.9 9.2 6.2 7.2 0.5 2.3 2 0 0 2 2 2 0 bZIP Maf transcription factor Viral_P18 PF04521.8 gi|116754654|ref|YP_843772.1| - 4.3 6.7 9.8 3.7 7.0 0.9 2.1 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein PilO PF04350.8 gi|116754654|ref|YP_843772.1| - 4.7 7.0 12.3 5.2 6.9 3.2 2.1 2 0 0 2 2 2 0 Pilus assembly protein, PilO DUF4407 PF14362.1 gi|116754654|ref|YP_843772.1| - 5.3 5.9 7.5 8.4 5.2 5.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Gp58 PF07902.6 gi|116754654|ref|YP_843772.1| - 5.5 5.0 6.9 20 3.2 4.9 1.8 1 1 0 1 1 1 0 gp58-like protein TBPIP PF07106.8 gi|116754654|ref|YP_843772.1| - 6.3 6.3 12.5 1.4 8.4 2.8 2.0 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prefoldin PF02996.12 gi|116754654|ref|YP_843772.1| - 7.6 6.2 12.4 3.4 7.3 1.0 2.4 1 1 1 2 2 2 0 Prefoldin subunit DUF972 PF06156.8 gi|116754654|ref|YP_843772.1| - 8.4 6.7 9.7 2.8e+02 1.9 6.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Pcc1 PF09341.5 gi|116754655|ref|YP_843773.1| - 1.5e-16 60.1 0.1 1.6e-16 60.0 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.8 gi|116754656|ref|YP_843774.1| - 8.4e-10 37.9 7.3 1.1e-09 37.5 5.1 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|116754656|ref|YP_843774.1| - 7.3e-05 22.0 1.3 9.1e-05 21.6 0.9 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|116754656|ref|YP_843774.1| - 0.00018 20.5 0.7 0.053 12.7 0.1 2.0 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|116754656|ref|YP_843774.1| - 0.00057 19.2 0.9 0.00079 18.8 0.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|116754656|ref|YP_843774.1| - 0.0019 17.9 1.3 0.026 14.3 0.1 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG HypA PF01155.14 gi|116754656|ref|YP_843774.1| - 0.0021 17.7 0.5 0.0021 17.7 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|116754656|ref|YP_843774.1| - 0.0027 17.4 4.3 0.12 12.1 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DUF951 PF06107.6 gi|116754656|ref|YP_843774.1| - 0.0027 17.1 3.6 0.027 13.9 0.2 2.0 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF951) DUF329 PF03884.9 gi|116754656|ref|YP_843774.1| - 0.0058 16.1 1.6 0.96 9.0 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF329) CpXC PF14353.1 gi|116754656|ref|YP_843774.1| - 0.0081 16.1 2.0 0.58 10.1 0.1 2.0 1 1 1 2 2 2 1 CpXC protein zinc_ribbon_6 PF14599.1 gi|116754656|ref|YP_843774.1| - 0.0088 15.8 1.3 0.011 15.5 0.9 1.2 1 0 0 1 1 1 1 Zinc-ribbon Sgf11 PF08209.6 gi|116754656|ref|YP_843774.1| - 0.0096 15.2 1.9 0.84 8.9 0.2 2.1 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) OrfB_Zn_ribbon PF07282.6 gi|116754656|ref|YP_843774.1| - 0.0097 15.5 2.1 0.013 15.1 1.5 1.3 1 1 0 1 1 1 1 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|116754656|ref|YP_843774.1| - 0.015 15.2 1.4 0.023 14.7 0.9 1.3 1 0 0 1 1 1 0 zinc-finger zf-TFIIB PF13453.1 gi|116754656|ref|YP_843774.1| - 0.021 14.0 1.4 0.042 13.0 1.0 1.5 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.1 gi|116754656|ref|YP_843774.1| - 0.025 14.2 3.5 0.4 10.4 2.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|116754656|ref|YP_843774.1| - 0.027 14.1 1.4 0.21 11.3 1.2 1.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-ISL3 PF14690.1 gi|116754656|ref|YP_843774.1| - 0.028 14.4 2.3 0.065 13.2 0.2 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.1 gi|116754656|ref|YP_843774.1| - 0.035 13.7 4.0 0.64 9.6 2.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|116754656|ref|YP_843774.1| - 0.049 13.4 1.5 0.17 11.6 1.0 1.7 1 1 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.17 gi|116754656|ref|YP_843774.1| - 0.049 13.3 1.2 0.18 11.5 0.9 1.7 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TFIIS_C PF01096.13 gi|116754656|ref|YP_843774.1| - 0.076 12.6 2.1 4.7 6.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-CHCC PF10276.4 gi|116754656|ref|YP_843774.1| - 0.085 12.7 0.4 0.14 12.0 0.3 1.5 1 0 0 1 1 1 0 Zinc-finger domain IBR PF01485.16 gi|116754656|ref|YP_843774.1| - 0.086 12.7 1.2 0.11 12.3 0.9 1.2 1 0 0 1 1 1 0 IBR domain Spt4 PF06093.8 gi|116754656|ref|YP_843774.1| - 0.098 12.5 0.2 0.11 12.3 0.2 1.1 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-Di19 PF05605.7 gi|116754656|ref|YP_843774.1| - 0.098 12.7 0.5 0.66 10.1 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF2072 PF09845.4 gi|116754656|ref|YP_843774.1| - 0.1 12.5 0.6 0.11 12.4 0.4 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Zn-ribbon_8 PF09723.5 gi|116754656|ref|YP_843774.1| - 0.12 12.2 5.8 0.37 10.7 4.0 1.8 1 1 0 1 1 1 0 Zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|116754656|ref|YP_843774.1| - 0.13 12.1 0.5 0.14 12.0 0.4 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-AN1 PF01428.11 gi|116754656|ref|YP_843774.1| - 0.16 11.9 1.1 0.45 10.4 0.9 1.6 1 1 1 2 2 2 0 AN1-like Zinc finger zf-C2HC_2 PF13913.1 gi|116754656|ref|YP_843774.1| - 0.18 11.5 3.7 6.4 6.5 0.7 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-FPG_IleRS PF06827.9 gi|116754656|ref|YP_843774.1| - 0.19 11.4 3.3 0.82 9.3 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS A2L_zn_ribbon PF08792.5 gi|116754656|ref|YP_843774.1| - 0.26 10.7 1.7 3.9 7.0 0.1 2.0 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-C2H2 PF00096.21 gi|116754656|ref|YP_843774.1| - 0.33 11.3 2.6 7.8 7.0 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Cys_rich_KTR PF14205.1 gi|116754656|ref|YP_843774.1| - 0.43 10.0 3.3 0.71 9.3 0.1 2.0 1 1 1 2 2 2 0 Cysteine-rich KTR DiS_P_DiS PF06750.8 gi|116754656|ref|YP_843774.1| - 0.47 10.2 2.0 9.3 6.1 0.1 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Zn_ribbon_recom PF13408.1 gi|116754656|ref|YP_843774.1| - 0.48 10.7 3.1 1.9 8.7 0.2 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Lar_restr_allev PF14354.1 gi|116754656|ref|YP_843774.1| - 0.58 10.5 2.3 1.5 9.1 1.6 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Transp_Tc5_C PF04236.10 gi|116754656|ref|YP_843774.1| - 0.58 10.4 2.7 7.9 6.7 0.4 2.1 1 1 1 2 2 2 0 Tc5 transposase C-terminal domain zf-FCS PF06467.9 gi|116754656|ref|YP_843774.1| - 0.66 9.6 0.1 0.66 9.6 0.1 1.9 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DUF2296 PF10058.4 gi|116754656|ref|YP_843774.1| - 1 9.1 4.8 34 4.2 3.0 2.3 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) zf-HIT PF04438.11 gi|116754656|ref|YP_843774.1| - 1.1 9.0 5.7 5.4 6.7 0.6 2.1 2 0 0 2 2 2 0 HIT zinc finger PyrI_C PF02748.10 gi|116754656|ref|YP_843774.1| - 2.1 7.8 4.5 0.7 9.3 0.2 1.9 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Desulfoferrod_N PF06397.7 gi|116754656|ref|YP_843774.1| - 2.3 7.6 4.4 2.7 7.4 0.2 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Mu-like_Com PF10122.4 gi|116754656|ref|YP_843774.1| - 3.9 6.6 6.8 18 4.4 1.2 2.2 1 1 0 1 1 1 0 Mu-like prophage protein Com UPF0547 PF10571.4 gi|116754656|ref|YP_843774.1| - 7 6.4 8.9 32 4.3 6.2 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Ribosomal_L37ae PF01780.14 gi|116754657|ref|YP_843775.1| - 3.9e-31 106.7 5.1 4.3e-31 106.6 3.5 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|116754657|ref|YP_843775.1| - 0.00023 20.9 1.8 0.00032 20.4 1.3 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|116754657|ref|YP_843775.1| - 0.002 17.7 0.6 0.0031 17.1 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.16 gi|116754657|ref|YP_843775.1| - 0.0057 16.4 0.4 0.0088 15.8 0.3 1.2 1 0 0 1 1 1 1 IBR domain Zn-ribbon_8 PF09723.5 gi|116754657|ref|YP_843775.1| - 0.0089 15.9 2.8 0.38 10.7 0.1 2.4 2 0 0 2 2 2 1 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|116754657|ref|YP_843775.1| - 0.026 14.3 1.5 0.097 12.4 1.0 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-H2C2_2 PF13465.1 gi|116754657|ref|YP_843775.1| - 0.026 14.7 0.8 2.1 8.7 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Rep_fac-A_C PF08646.5 gi|116754657|ref|YP_843775.1| - 0.034 13.8 0.3 0.042 13.5 0.2 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain Elf1 PF05129.8 gi|116754657|ref|YP_843775.1| - 0.036 13.7 1.8 0.078 12.6 1.2 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.1 gi|116754657|ref|YP_843775.1| - 0.04 13.5 1.3 2.2 7.9 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|116754657|ref|YP_843775.1| - 0.04 13.4 0.5 1.3 8.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.1 gi|116754657|ref|YP_843775.1| - 0.046 13.5 0.4 0.046 13.5 0.3 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4379) zinc_ribbon_4 PF13717.1 gi|116754657|ref|YP_843775.1| - 0.057 13.1 1.8 2.3 7.9 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF2296 PF10058.4 gi|116754657|ref|YP_843775.1| - 0.06 13.1 1.1 1 9.1 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Rubredoxin PF00301.15 gi|116754657|ref|YP_843775.1| - 0.066 13.1 1.3 2.8 7.8 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin zf-C2H2_4 PF13894.1 gi|116754657|ref|YP_843775.1| - 0.079 13.3 1.6 7.2 7.1 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger UPF0547 PF10571.4 gi|116754657|ref|YP_843775.1| - 0.099 12.3 6.1 0.79 9.4 4.2 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|116754657|ref|YP_843775.1| - 0.11 12.0 1.8 11 5.7 0.2 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2225 PF09986.4 gi|116754657|ref|YP_843775.1| - 0.14 11.5 0.3 0.44 9.9 0.0 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) DZR PF12773.2 gi|116754657|ref|YP_843775.1| - 0.16 11.7 1.2 1.1 9.1 0.8 2.0 1 1 0 1 1 1 0 Double zinc ribbon CpXC PF14353.1 gi|116754657|ref|YP_843775.1| - 0.21 11.5 1.2 6.2 6.8 0.0 2.1 1 1 1 2 2 2 0 CpXC protein zf-TFIIB PF13453.1 gi|116754657|ref|YP_843775.1| - 0.38 9.9 3.2 1.3 8.2 2.2 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-C2H2 PF00096.21 gi|116754657|ref|YP_843775.1| - 0.43 11.0 2.7 8.9 6.8 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-HIT PF04438.11 gi|116754657|ref|YP_843775.1| - 0.47 10.1 4.4 1.8 8.3 0.9 2.1 2 0 0 2 2 2 0 HIT zinc finger RNA_POL_M_15KD PF02150.11 gi|116754657|ref|YP_843775.1| - 0.78 9.4 4.8 4.7 6.9 3.0 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-RanBP PF00641.13 gi|116754657|ref|YP_843775.1| - 0.83 8.8 4.9 0.26 10.4 0.5 2.0 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn_Tnp_IS1 PF03811.8 gi|116754657|ref|YP_843775.1| - 6.6 6.3 9.8 1.7 8.2 3.9 2.2 2 1 0 2 2 2 0 InsA N-terminal domain RNase_PH PF01138.16 gi|116754658|ref|YP_843776.1| - 2e-25 89.6 0.0 3.1e-25 89.0 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|116754658|ref|YP_843776.1| - 1.3e-07 31.4 0.3 2.1e-07 30.7 0.2 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|116754659|ref|YP_843777.1| - 3.8e-35 121.0 0.0 5.4e-35 120.5 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|116754659|ref|YP_843777.1| - 1.6e-17 63.1 0.1 3.4e-17 62.1 0.0 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|116754660|ref|YP_843778.1| - 5e-12 45.2 0.1 1e-11 44.2 0.1 1.5 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.1 gi|116754660|ref|YP_843778.1| - 5.4e-09 35.1 0.0 9.7e-09 34.3 0.0 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|116754660|ref|YP_843778.1| - 1.2e-08 34.8 0.1 2.5e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 S1 RNA binding domain KH_3 PF13014.1 gi|116754660|ref|YP_843778.1| - 1.2e-05 24.8 0.1 3.6e-05 23.2 0.0 1.9 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|116754660|ref|YP_843778.1| - 0.00012 21.6 0.1 0.00025 20.5 0.1 1.6 1 1 0 1 1 1 1 KH domain SBDS PF01172.13 gi|116754661|ref|YP_843779.1| - 9.7e-26 89.3 0.0 1.7e-25 88.5 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|116754661|ref|YP_843779.1| - 4.6e-22 78.0 0.1 6.5e-22 77.5 0.1 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.21 gi|116754662|ref|YP_843780.1| - 1.4e-57 194.0 0.3 1.7e-57 193.7 0.2 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|116754662|ref|YP_843780.1| - 3.4e-15 55.0 0.4 1.1e-14 53.3 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.14 gi|116754663|ref|YP_843781.1| - 1.1e-17 63.8 0.0 1.5e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.11 gi|116754664|ref|YP_843782.1| - 5.3e-29 100.3 0.0 7.1e-29 99.9 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 CutC PF03932.9 gi|116754664|ref|YP_843782.1| - 0.003 16.8 0.0 0.0048 16.1 0.0 1.3 1 0 0 1 1 1 1 CutC family PEP-utilizers PF00391.18 gi|116754664|ref|YP_843782.1| - 0.012 15.2 0.3 2.4 7.7 0.1 2.5 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain RNA_binding PF01877.12 gi|116754665|ref|YP_843783.1| - 8.1e-35 119.4 0.0 9.4e-35 119.2 0.0 1.0 1 0 0 1 1 1 1 RNA binding DUF3259 PF11652.3 gi|116754665|ref|YP_843783.1| - 0.043 13.9 0.1 0.082 13.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3259) Ribosomal_L15e PF00827.12 gi|116754666|ref|YP_843784.1| - 2.3e-82 275.1 9.7 2.7e-82 274.9 6.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 DNA_primase_lrg PF04104.9 gi|116754667|ref|YP_843785.1| - 4e-08 32.8 0.1 2e-07 30.5 0.0 2.1 2 1 0 2 2 2 1 Eukaryotic and archaeal DNA primase, large subunit ACTH_domain PF00976.13 gi|116754667|ref|YP_843785.1| - 0.1 12.4 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Corticotropin ACTH domain DUF2114 PF09887.4 gi|116754668|ref|YP_843786.1| - 3.5e-225 747.4 0.5 4.2e-225 747.1 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Radical_SAM PF04055.16 gi|116754669|ref|YP_843787.1| - 2.5e-09 37.5 0.0 3.4e-07 30.5 0.0 2.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|116754669|ref|YP_843787.1| - 2e-05 24.7 0.0 3.6e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|116754669|ref|YP_843787.1| - 9.9e-05 22.3 0.1 0.00023 21.1 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Archease PF01951.11 gi|116754670|ref|YP_843788.1| - 8.3e-41 139.1 0.1 9.2e-41 138.9 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.12 gi|116754671|ref|YP_843789.1| - 2.5e-149 497.8 0.0 2.8e-149 497.6 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB SpoU_methylase PF00588.14 gi|116754672|ref|YP_843790.1| - 1e-30 106.4 0.0 1.5e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family TPR_12 PF13424.1 gi|116754673|ref|YP_843791.1| - 2.4e-181 588.1 111.5 3.5e-17 62.1 0.2 16.1 9 3 11 20 20 20 20 Tetratricopeptide repeat TPR_11 PF13414.1 gi|116754673|ref|YP_843791.1| - 2.8e-97 318.3 61.2 5.5e-11 41.9 0.1 16.5 15 1 2 17 17 17 14 TPR repeat TPR_1 PF00515.23 gi|116754673|ref|YP_843791.1| - 1.8e-96 312.1 43.4 1.5e-05 24.3 0.1 25.6 26 0 0 26 26 25 19 Tetratricopeptide repeat TPR_2 PF07719.12 gi|116754673|ref|YP_843791.1| - 1.2e-85 274.6 75.1 0.00012 21.7 0.1 26.4 27 1 0 27 27 27 20 Tetratricopeptide repeat TPR_7 PF13176.1 gi|116754673|ref|YP_843791.1| - 2.6e-76 245.5 70.7 5.4e-06 25.8 0.0 26.8 27 1 0 27 27 27 18 Tetratricopeptide repeat TPR_10 PF13374.1 gi|116754673|ref|YP_843791.1| - 1.7e-67 221.6 85.9 1.3e-06 28.0 0.1 24.2 24 1 1 25 25 24 15 Tetratricopeptide repeat TPR_8 PF13181.1 gi|116754673|ref|YP_843791.1| - 4.3e-58 188.8 57.3 0.0037 16.9 0.1 26.0 26 0 0 26 26 26 15 Tetratricopeptide repeat SNAP PF14938.1 gi|116754673|ref|YP_843791.1| - 1.2e-55 188.6 19.7 1.1e-10 41.2 0.4 10.4 3 1 8 11 11 11 8 Soluble NSF attachment protein, SNAP TPR_14 PF13428.1 gi|116754673|ref|YP_843791.1| - 6.8e-46 150.5 71.0 0.029 15.0 0.0 25.2 16 5 10 26 26 24 10 Tetratricopeptide repeat TPR_16 PF13432.1 gi|116754673|ref|YP_843791.1| - 6.2e-39 131.8 74.3 1.7e-05 25.3 0.2 17.1 9 5 9 19 19 19 16 Tetratricopeptide repeat TPR_6 PF13174.1 gi|116754673|ref|YP_843791.1| - 4.7e-26 89.4 53.1 0.58 10.7 0.0 25.1 24 4 2 26 26 24 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|116754673|ref|YP_843791.1| - 9e-26 87.8 26.6 1.2 9.5 0.0 22.3 22 0 0 22 22 22 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|116754673|ref|YP_843791.1| - 1.1e-22 80.1 38.2 0.044 14.1 0.1 15.3 10 5 5 16 16 16 7 Tetratricopeptide repeat Apc3 PF12895.2 gi|116754673|ref|YP_843791.1| - 2.2e-20 72.5 29.4 0.037 14.1 2.0 13.4 5 5 10 16 16 16 5 Anaphase-promoting complex, cyclosome, subunit 3 RPN7 PF10602.4 gi|116754673|ref|YP_843791.1| - 3.7e-17 62.2 22.0 0.034 13.5 0.0 11.8 5 3 5 11 11 11 5 26S proteasome subunit RPN7 MIT PF04212.13 gi|116754673|ref|YP_843791.1| - 5.4e-14 51.8 34.3 2.4 8.0 0.0 16.5 17 3 2 19 19 16 3 MIT (microtubule interacting and transport) domain Foie-gras_1 PF11817.3 gi|116754673|ref|YP_843791.1| - 4.9e-08 32.7 30.6 0.18 11.2 0.2 11.0 6 2 4 11 11 11 2 Foie gras liver health family 1 DUF3856 PF12968.2 gi|116754673|ref|YP_843791.1| - 5.3e-07 29.5 34.9 0.082 12.7 0.8 11.1 5 2 8 13 13 12 4 Domain of Unknown Function (DUF3856) PPR PF01535.15 gi|116754673|ref|YP_843791.1| - 1e-06 28.3 21.8 1.8 8.6 0.0 14.4 16 1 1 17 17 11 1 PPR repeat TPR_4 PF07721.9 gi|116754673|ref|YP_843791.1| - 3.1e-06 27.0 56.9 0.21 12.1 0.1 18.1 22 2 2 24 24 16 3 Tetratricopeptide repeat TPR_3 PF07720.7 gi|116754673|ref|YP_843791.1| - 9.8e-06 25.2 1.9 1.1 9.1 0.1 8.0 10 0 0 10 10 9 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|116754673|ref|YP_843791.1| - 3.4e-05 23.8 18.9 4.2 7.3 0.0 9.8 10 3 0 10 10 9 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|116754673|ref|YP_843791.1| - 0.00012 21.8 55.9 0.031 14.1 0.0 13.3 13 3 2 15 15 14 3 Tetratricopeptide repeat PPR_3 PF13812.1 gi|116754673|ref|YP_843791.1| - 0.014 15.6 15.4 27 5.3 0.0 9.9 9 0 0 9 9 6 0 Pentatricopeptide repeat domain DUF2989 PF11207.3 gi|116754673|ref|YP_843791.1| - 0.02 14.3 4.0 2.6 7.4 0.0 5.1 6 1 0 6 6 5 0 Protein of unknown function (DUF2989) Flu_M1 PF00598.14 gi|116754673|ref|YP_843791.1| - 0.026 13.9 0.4 0.76 9.1 0.0 3.4 4 0 0 4 4 4 0 Influenza Matrix protein (M1) DUF349 PF03993.7 gi|116754673|ref|YP_843791.1| - 0.04 14.0 0.7 83 3.4 0.0 5.0 5 0 0 5 5 3 0 Domain of Unknown Function (DUF349) PPR_2 PF13041.1 gi|116754673|ref|YP_843791.1| - 0.047 13.6 3.6 13 5.8 0.1 6.5 6 1 1 7 7 5 0 PPR repeat family SHNi-TPR PF10516.4 gi|116754673|ref|YP_843791.1| - 0.084 12.1 17.5 23 4.3 0.0 8.9 10 1 1 11 11 9 0 SHNi-TPR CorA PF01544.13 gi|116754673|ref|YP_843791.1| - 0.78 8.7 7.7 1.5 7.7 0.1 4.0 4 0 0 4 4 4 0 CorA-like Mg2+ transporter protein Apc5 PF12862.2 gi|116754673|ref|YP_843791.1| - 1 9.2 18.4 0.85 9.5 0.0 7.6 9 3 0 9 9 7 0 Anaphase-promoting complex subunit 5 Fis1_TPR_C PF14853.1 gi|116754673|ref|YP_843791.1| - 2.6 7.9 8.5 1.9 8.4 0.1 4.9 6 0 0 6 6 4 0 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.1 gi|116754673|ref|YP_843791.1| - 2.7 8.1 12.9 0.18 11.9 0.3 5.5 6 0 0 6 6 4 0 Tetratricopeptide repeat CxxCxxCC PF03692.10 gi|116754674|ref|YP_843792.1| - 2.4e-11 43.9 0.2 7.3e-11 42.3 0.1 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain MtrH PF02007.13 gi|116754675|ref|YP_843793.1| - 1.5e-129 431.2 1.5 1.7e-129 431.0 1.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit Phage_lysozyme PF00959.14 gi|116754675|ref|YP_843793.1| - 0.036 14.3 0.2 2.7 8.3 0.0 2.4 2 0 0 2 2 2 0 Phage lysozyme MtrG PF04210.8 gi|116754676|ref|YP_843794.1| - 9e-22 76.5 0.2 1.1e-21 76.2 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G ABC2_membrane_3 PF12698.2 gi|116754676|ref|YP_843794.1| - 0.31 10.0 0.0 0.31 10.0 0.0 1.9 1 1 1 2 2 2 0 ABC-2 family transporter protein MtrF PF09472.5 gi|116754677|ref|YP_843795.1| - 6.3e-29 99.0 0.2 7.2e-29 98.8 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.9 gi|116754678|ref|YP_843796.1| - 2.3e-78 261.6 3.1 3e-78 261.2 2.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrB PF05440.7 gi|116754679|ref|YP_843797.1| - 1e-25 89.6 0.1 1.2e-25 89.3 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrC PF04211.8 gi|116754680|ref|YP_843798.1| - 1.5e-73 247.0 29.1 1.7e-73 246.9 20.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrD PF04207.7 gi|116754681|ref|YP_843799.1| - 7.6e-87 290.3 21.2 9.4e-87 290.0 14.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrE PF04206.7 gi|116754682|ref|YP_843800.1| - 1.1e-109 365.6 8.4 1.2e-109 365.4 5.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E DUF1965 PF09248.5 gi|116754682|ref|YP_843800.1| - 0.027 14.3 0.0 0.067 13.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1965) GtrA PF04138.9 gi|116754682|ref|YP_843800.1| - 0.96 9.4 10.5 0.099 12.6 3.7 2.0 2 0 0 2 2 2 0 GtrA-like protein DUF46 PF01864.12 gi|116754683|ref|YP_843801.1| - 2.6e-53 180.4 5.4 3e-53 180.2 3.8 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|116754683|ref|YP_843801.1| - 1.3e-07 31.5 2.2 1.3e-07 31.5 1.6 2.1 1 1 1 2 2 2 1 Cytidylyltransferase family Nitroreductase PF00881.19 gi|116754684|ref|YP_843802.1| - 7e-29 100.7 0.0 1.1e-28 100.1 0.0 1.3 1 0 0 1 1 1 1 Nitroreductase family cobW PF02492.14 gi|116754685|ref|YP_843803.1| - 1.9e-05 24.2 0.0 4.1e-05 23.0 0.0 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|116754685|ref|YP_843803.1| - 0.15 11.1 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin HTH_3 PF01381.17 gi|116754686|ref|YP_843804.1| - 6.4e-12 45.1 0.0 1.8e-11 43.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|116754686|ref|YP_843804.1| - 6.2e-10 38.9 0.0 1.7e-09 37.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|116754686|ref|YP_843804.1| - 3.2e-06 27.2 0.0 6.8e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain NUMOD1 PF07453.8 gi|116754686|ref|YP_843804.1| - 0.0062 16.3 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 NUMOD1 domain HTH_37 PF13744.1 gi|116754686|ref|YP_843804.1| - 0.015 15.1 0.0 0.027 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|116754686|ref|YP_843804.1| - 0.018 14.3 0.0 0.05 13.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.1 gi|116754686|ref|YP_843804.1| - 0.026 14.6 0.1 0.12 12.6 0.0 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.8 gi|116754686|ref|YP_843804.1| - 0.066 13.2 0.0 0.1 12.6 0.0 1.5 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain ACP_syn_III_C PF08541.5 gi|116754687|ref|YP_843805.1| - 5.3e-10 39.1 0.0 1.2e-09 38.0 0.0 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|116754687|ref|YP_843805.1| - 1.7e-06 27.7 0.0 2.2e-05 24.1 0.0 2.1 2 1 1 3 3 3 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|116754687|ref|YP_843805.1| - 0.00059 19.4 3.5 0.00059 19.4 2.4 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_N PF01154.12 gi|116754687|ref|YP_843805.1| - 0.00077 19.0 0.1 0.0011 18.5 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.18 gi|116754687|ref|YP_843805.1| - 0.0065 15.4 0.3 0.01 14.8 0.2 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|116754687|ref|YP_843805.1| - 0.28 10.6 3.5 14 5.0 0.0 2.5 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.13 gi|116754688|ref|YP_843806.1| - 7.1e-12 44.8 1.5 1.4e-11 43.8 0.4 2.0 2 1 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|116754688|ref|YP_843806.1| - 1.9e-11 43.4 0.8 8.5e-10 38.0 0.1 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|116754688|ref|YP_843806.1| - 0.00011 21.7 6.5 0.00011 21.7 4.5 2.9 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|116754688|ref|YP_843806.1| - 0.046 13.3 1.8 9.6 5.9 0.4 2.6 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|116754688|ref|YP_843806.1| - 0.13 12.0 1.9 1.8 8.4 0.0 2.8 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|116754689|ref|YP_843807.1| - 1.2e-17 63.8 0.0 1.6e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|116754689|ref|YP_843807.1| - 2.9e-12 46.1 1.4 9.2e-12 44.5 1.0 1.9 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|116754689|ref|YP_843807.1| - 0.032 14.0 1.8 0.054 13.3 1.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon FdhE PF04216.7 gi|116754689|ref|YP_843807.1| - 0.037 13.7 0.2 0.049 13.3 0.1 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-C3HC4_3 PF13920.1 gi|116754689|ref|YP_843807.1| - 0.065 12.9 1.2 0.12 12.0 0.8 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Auto_anti-p27 PF06677.7 gi|116754689|ref|YP_843807.1| - 0.32 10.8 4.9 0.24 11.1 1.8 2.0 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_gyraseB PF00204.20 gi|116754690|ref|YP_843808.1| - 1e-61 207.1 0.0 1.6e-61 206.4 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|116754690|ref|YP_843808.1| - 2.4e-30 104.0 0.1 4.9e-30 103.0 0.1 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|116754690|ref|YP_843808.1| - 3.4e-28 97.5 0.1 8.3e-28 96.3 0.0 1.7 2 0 0 2 2 2 1 Toprim domain HATPase_c PF02518.21 gi|116754690|ref|YP_843808.1| - 7.9e-20 70.6 0.1 2e-19 69.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|116754690|ref|YP_843808.1| - 0.00055 19.5 0.0 0.0014 18.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.1 gi|116754690|ref|YP_843808.1| - 0.0043 17.0 0.0 0.017 15.0 0.0 2.1 1 0 0 1 1 1 1 Toprim domain DNA_topoisoIV PF00521.15 gi|116754691|ref|YP_843809.1| - 4.9e-161 536.3 0.0 6.4e-161 535.9 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|116754691|ref|YP_843809.1| - 3.6e-59 195.8 16.2 1.1e-15 56.5 0.2 6.8 7 0 0 7 7 7 6 DNA gyrase C-terminal domain, beta-propeller COP23 PF14218.1 gi|116754691|ref|YP_843809.1| - 0.18 11.3 0.0 0.45 10.0 0.0 1.7 1 0 0 1 1 1 0 Circadian oscillating protein COP23 OrfB_Zn_ribbon PF07282.6 gi|116754692|ref|YP_843810.1| - 4.1e-18 64.7 1.4 4.1e-18 64.7 1.0 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|116754692|ref|YP_843810.1| - 7.3e-14 51.7 2.8 1.1e-13 51.1 2.0 1.1 1 0 0 1 1 1 1 Probable transposase UPF0547 PF10571.4 gi|116754692|ref|YP_843810.1| - 0.0087 15.7 2.3 0.023 14.3 1.6 1.8 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|116754692|ref|YP_843810.1| - 0.01 15.4 2.3 0.019 14.6 1.6 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family IBR PF01485.16 gi|116754692|ref|YP_843810.1| - 0.013 15.3 4.9 0.032 14.0 3.4 1.6 1 0 0 1 1 1 0 IBR domain TF_Zn_Ribbon PF08271.7 gi|116754692|ref|YP_843810.1| - 0.1 11.9 0.1 0.1 11.9 0.0 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Ole-e-6 PF09253.5 gi|116754692|ref|YP_843810.1| - 0.19 11.4 5.2 0.14 11.7 1.5 2.4 2 0 0 2 2 2 0 Pollen allergen ole e 6 VIT1 PF01988.14 gi|116754693|ref|YP_843811.1| - 6.5e-23 81.3 28.2 2.1e-21 76.3 19.6 2.0 1 1 0 1 1 1 1 VIT family DUF2207 PF09972.4 gi|116754693|ref|YP_843811.1| - 0.25 9.8 3.3 0.16 10.4 1.3 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DNA_pol_B PF00136.16 gi|116754694|ref|YP_843812.1| - 4.4e-110 368.6 0.0 9.8e-110 367.4 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|116754694|ref|YP_843812.1| - 3e-52 177.5 0.0 8.8e-52 175.9 0.0 1.8 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|116754694|ref|YP_843812.1| - 8e-06 25.5 0.0 1.5e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|116754694|ref|YP_843812.1| - 0.012 15.4 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 RNase_H superfamily Nuc_rec_co-act PF08815.5 gi|116754694|ref|YP_843812.1| - 0.13 11.8 0.0 0.77 9.3 0.0 2.2 2 0 0 2 2 2 0 Nuclear receptor coactivator DNA_pol_B_2 PF03175.8 gi|116754694|ref|YP_843812.1| - 0.24 10.0 0.0 0.4 9.2 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral GTP_EFTU_D2 PF03144.20 gi|116754695|ref|YP_843813.1| - 1.2e-10 41.3 0.2 2.4e-10 40.3 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|116754695|ref|YP_843813.1| - 9.6e-07 28.3 0.0 1.8e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu domain 4 3-dmu-9_3-mt PF06983.8 gi|116754695|ref|YP_843813.1| - 0.023 15.0 0.0 0.043 14.1 0.0 1.4 1 0 0 1 1 1 0 3-demethylubiquinone-9 3-methyltransferase DUF3417 PF11897.3 gi|116754696|ref|YP_843814.1| - 7e-37 126.0 0.0 2.3e-36 124.3 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.15 gi|116754696|ref|YP_843814.1| - 1.2e-26 92.8 0.0 2.5e-21 75.2 0.0 3.6 3 1 0 3 3 3 2 Carbohydrate phosphorylase YcaO PF02624.11 gi|116754698|ref|YP_843816.1| - 5.8e-98 328.4 1.3 1.2e-97 327.4 0.6 1.6 2 0 0 2 2 2 1 YcaO-like family DNA_pol_B_exo1 PF03104.14 gi|116754698|ref|YP_843816.1| - 0.19 10.5 0.1 0.29 9.9 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase family B, exonuclease domain TfuA PF07812.7 gi|116754699|ref|YP_843817.1| - 8.8e-47 157.4 0.0 1.3e-46 156.9 0.0 1.3 1 0 0 1 1 1 1 TfuA-like protein AdoMet_Synthase PF01941.14 gi|116754700|ref|YP_843818.1| - 1.8e-130 435.0 0.1 2.1e-130 434.7 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Nup35_RRM_2 PF14605.1 gi|116754700|ref|YP_843818.1| - 0.004 16.8 0.1 0.016 14.9 0.0 1.9 2 0 0 2 2 2 1 Nup53/35/40-type RNA recognition motif AMP-binding_C_2 PF14535.1 gi|116754700|ref|YP_843818.1| - 0.021 14.8 0.6 0.074 13.1 0.2 1.9 2 0 0 2 2 2 0 AMP-binding enzyme C-terminal domain Hydantoinase_A PF01968.13 gi|116754701|ref|YP_843819.1| - 1.1e-60 205.2 8.3 1.3e-59 201.7 1.2 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|116754701|ref|YP_843819.1| - 2.5e-29 102.0 3.3 1.5e-26 92.9 0.8 2.7 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|116754701|ref|YP_843819.1| - 5.5e-06 25.8 0.3 0.0023 17.2 0.1 3.3 2 2 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|116754701|ref|YP_843819.1| - 5.1e-05 21.7 1.9 0.0034 15.7 0.1 2.4 2 0 0 2 2 2 2 MutL protein FtsA PF14450.1 gi|116754701|ref|YP_843819.1| - 0.0012 18.6 6.1 0.26 11.1 0.1 3.2 3 0 0 3 3 3 2 Cell division protein FtsA Ppx-GppA PF02541.11 gi|116754701|ref|YP_843819.1| - 0.0049 16.1 1.3 0.073 12.2 0.1 2.4 2 0 0 2 2 2 1 Ppx/GppA phosphatase family EutA PF06277.6 gi|116754701|ref|YP_843819.1| - 0.0063 15.1 0.8 2 6.9 0.0 2.2 2 0 0 2 2 2 2 Ethanolamine utilisation protein EutA DDR PF08841.5 gi|116754701|ref|YP_843819.1| - 0.038 12.8 0.2 0.038 12.8 0.1 2.1 3 0 0 3 3 3 0 Diol dehydratase reactivase ATPase-like domain StbA PF06406.6 gi|116754701|ref|YP_843819.1| - 0.23 10.3 1.7 0.49 9.2 0.1 2.0 2 0 0 2 2 2 0 StbA protein MreB_Mbl PF06723.8 gi|116754701|ref|YP_843819.1| - 0.69 8.4 5.8 0.13 10.7 0.2 2.3 3 0 0 3 3 3 0 MreB/Mbl protein Peripla_BP_3 PF13377.1 gi|116754701|ref|YP_843819.1| - 2.1 8.3 5.9 0.48 10.4 0.6 2.5 3 0 0 3 3 3 0 Periplasmic binding protein-like domain Hist_deacetyl PF00850.14 gi|116754702|ref|YP_843820.1| - 3.8e-64 216.9 0.0 2.9e-63 214.0 0.0 2.0 1 1 0 1 1 1 1 Histone deacetylase domain DUF2181 PF10223.4 gi|116754702|ref|YP_843820.1| - 0.2 10.9 0.1 0.43 9.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2181) AIRS_C PF02769.17 gi|116754704|ref|YP_843822.1| - 1.8e-15 57.2 3.1 3.6e-15 56.2 2.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|116754704|ref|YP_843822.1| - 9e-14 51.4 0.2 2.1e-13 50.3 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PTS_2-RNA PF01885.11 gi|116754706|ref|YP_843824.1| - 1.8e-37 128.4 0.0 2.2e-37 128.1 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family MarC PF01914.12 gi|116754707|ref|YP_843825.1| - 1.6e-59 200.4 12.0 1.8e-59 200.2 8.4 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.11 gi|116754707|ref|YP_843825.1| - 0.00034 20.1 5.4 0.001 18.5 3.6 2.0 1 1 0 1 1 1 1 Integral membrane protein TerC family LysE PF01810.13 gi|116754707|ref|YP_843825.1| - 0.0056 15.9 7.0 0.074 12.3 4.6 2.5 1 1 0 1 1 1 1 LysE type translocator FAD_binding_2 PF00890.19 gi|116754708|ref|YP_843826.1| - 7.1e-15 54.7 3.9 8.4e-08 31.4 0.6 3.1 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|116754708|ref|YP_843826.1| - 2.2e-13 49.8 0.2 3.4e-07 29.4 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|116754708|ref|YP_843826.1| - 4.3e-13 49.6 0.1 7.8e-06 25.9 0.0 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|116754708|ref|YP_843826.1| - 5.4e-12 45.2 1.2 0.00056 18.8 0.0 3.2 3 0 0 3 3 3 3 Glucose inhibited division protein A HI0933_like PF03486.9 gi|116754708|ref|YP_843826.1| - 9e-12 44.1 0.1 1.5e-07 30.3 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|116754708|ref|YP_843826.1| - 9.5e-08 31.4 0.1 1.5e-07 30.8 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|116754708|ref|YP_843826.1| - 5e-06 26.4 3.8 5.3e-06 26.3 0.0 2.8 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|116754708|ref|YP_843826.1| - 1.2e-05 24.5 0.7 0.00019 20.6 0.8 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|116754708|ref|YP_843826.1| - 0.0001 22.6 0.1 0.02 15.3 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|116754708|ref|YP_843826.1| - 0.00014 20.9 0.1 0.00039 19.4 0.0 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|116754708|ref|YP_843826.1| - 0.00038 20.5 0.0 0.0024 17.9 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|116754708|ref|YP_843826.1| - 0.0009 18.4 0.3 0.0018 17.4 0.2 1.5 1 0 0 1 1 1 1 Thi4 family UDPG_MGDP_dh_N PF03721.9 gi|116754708|ref|YP_843826.1| - 0.11 11.8 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.1 gi|116754708|ref|YP_843826.1| - 0.16 11.7 0.0 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding SPOUT_MTase PF02590.12 gi|116754709|ref|YP_843827.1| - 7.8e-42 142.6 0.0 1.2e-41 141.9 0.0 1.3 1 1 0 1 1 1 1 Predicted SPOUT methyltransferase AMP-binding PF00501.23 gi|116754710|ref|YP_843828.1| - 2e-91 306.4 0.0 2.4e-91 306.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|116754710|ref|YP_843828.1| - 3.8e-21 75.8 0.1 1.1e-20 74.3 0.1 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1699 PF08004.6 gi|116754711|ref|YP_843829.1| - 1.8e-62 208.6 0.3 2.1e-62 208.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) 2TM PF13239.1 gi|116754712|ref|YP_843830.1| - 2.8e-14 52.9 1.5 3.1e-14 52.8 1.0 1.1 1 0 0 1 1 1 1 2TM domain CAAD PF14159.1 gi|116754712|ref|YP_843830.1| - 0.0013 18.3 0.2 0.0016 18.0 0.1 1.2 1 0 0 1 1 1 1 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase AhpC-TSA PF00578.16 gi|116754713|ref|YP_843831.1| - 7.9e-32 109.5 0.0 1.3e-31 108.8 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|116754713|ref|YP_843831.1| - 3.8e-15 55.2 0.2 6.6e-15 54.4 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|116754713|ref|YP_843831.1| - 2.6e-10 40.0 0.0 3.6e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Redoxin Fer4_6 PF12837.2 gi|116754714|ref|YP_843832.1| - 0.0001 21.9 12.1 0.00098 18.8 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|116754714|ref|YP_843832.1| - 0.00021 21.0 10.8 0.003 17.4 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116754714|ref|YP_843832.1| - 0.00081 19.7 10.1 0.086 13.2 0.9 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754714|ref|YP_843832.1| - 0.0012 18.5 13.0 0.058 13.2 10.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|116754714|ref|YP_843832.1| - 0.002 17.9 10.2 0.0034 17.2 7.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|116754714|ref|YP_843832.1| - 0.0029 17.6 6.9 2.4 8.2 0.1 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754714|ref|YP_843832.1| - 0.0031 17.7 11.8 0.0057 16.8 8.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754714|ref|YP_843832.1| - 0.0088 16.7 7.7 0.14 12.8 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|116754714|ref|YP_843832.1| - 0.01 15.4 3.4 0.01 15.4 2.3 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|116754714|ref|YP_843832.1| - 0.014 15.7 0.9 0.014 15.7 0.6 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|116754714|ref|YP_843832.1| - 0.59 10.5 11.5 1.1e+02 3.2 7.9 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116754714|ref|YP_843832.1| - 4.2 8.0 9.9 0.39 11.3 0.8 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain TauE PF01925.14 gi|116754715|ref|YP_843833.1| - 5.4e-40 137.3 45.6 5.4e-40 137.3 31.6 1.7 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE Ribosomal_60s PF00428.14 gi|116754716|ref|YP_843834.1| - 3.7e-18 65.7 17.7 4.3e-18 65.5 12.3 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein DEC-1_N PF04625.8 gi|116754716|ref|YP_843834.1| - 0.035 12.8 0.8 0.037 12.7 0.6 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Sigma70_ner PF04546.8 gi|116754716|ref|YP_843834.1| - 0.047 13.3 1.3 0.057 13.0 0.9 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF1631 PF07793.6 gi|116754716|ref|YP_843834.1| - 0.15 10.2 1.8 0.16 10.0 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) DSBA PF01323.15 gi|116754716|ref|YP_843834.1| - 0.17 11.4 3.5 5.5 6.4 0.0 2.0 1 1 1 2 2 2 0 DSBA-like thioredoxin domain PepSY_2 PF13670.1 gi|116754716|ref|YP_843834.1| - 0.53 10.2 8.3 10 6.1 4.6 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF3323 PF11796.3 gi|116754716|ref|YP_843834.1| - 0.67 9.2 4.5 2.5 7.3 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function N-terminus (DUF3323) Ribosomal_L10 PF00466.15 gi|116754717|ref|YP_843835.1| - 2.6e-17 62.5 0.2 5.2e-17 61.6 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|116754717|ref|YP_843835.1| - 0.0041 17.4 7.6 0.013 15.9 5.3 2.0 1 1 0 1 1 1 1 60s Acidic ribosomal protein DNA_ligase_OB PF03120.11 gi|116754717|ref|YP_843835.1| - 0.055 13.1 0.2 0.21 11.3 0.2 1.9 1 0 0 1 1 1 0 NAD-dependent DNA ligase OB-fold domain Ribosomal_L1 PF00687.16 gi|116754718|ref|YP_843836.1| - 7.8e-50 169.2 0.0 9.2e-50 169.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.9 gi|116754719|ref|YP_843837.1| - 5.3e-23 80.2 1.1 9.6e-23 79.4 0.8 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|116754719|ref|YP_843837.1| - 1.6e-21 76.2 0.5 1.6e-21 76.2 0.3 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.8 gi|116754720|ref|YP_843838.1| - 3.1e-24 84.5 0.4 4.9e-24 83.8 0.3 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|116754720|ref|YP_843838.1| - 3.8e-07 29.5 0.4 4.6e-05 22.9 0.1 2.5 2 0 0 2 2 2 2 KOW motif NusG PF02357.14 gi|116754720|ref|YP_843838.1| - 6.8e-05 23.0 0.4 0.00028 21.0 0.0 2.1 2 1 0 2 2 2 1 Transcription termination factor nusG Cys_rich_KTR PF14205.1 gi|116754721|ref|YP_843839.1| - 0.00059 19.2 2.2 0.014 14.8 0.2 2.2 2 0 0 2 2 2 1 Cysteine-rich KTR zf-ribbon_3 PF13248.1 gi|116754721|ref|YP_843839.1| - 0.0086 15.2 4.0 0.047 12.9 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain RecR PF02132.10 gi|116754721|ref|YP_843839.1| - 0.02 14.3 1.0 3.2 7.2 0.0 2.4 2 0 0 2 2 2 0 RecR protein RNA_POL_M_15KD PF02150.11 gi|116754721|ref|YP_843839.1| - 0.022 14.4 4.0 0.13 12.0 0.9 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF164 PF02591.10 gi|116754721|ref|YP_843839.1| - 0.031 14.1 0.2 4.1 7.3 0.0 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain DUF3797 PF12677.2 gi|116754721|ref|YP_843839.1| - 0.038 13.5 2.2 1.8 8.2 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) zf-RING_3 PF14369.1 gi|116754721|ref|YP_843839.1| - 0.045 13.7 1.5 6.7 6.7 0.1 2.4 2 0 0 2 2 2 0 zinc-finger NOB1_Zn_bind PF08772.6 gi|116754721|ref|YP_843839.1| - 0.048 13.4 0.8 0.048 13.4 0.6 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like PhnA_Zn_Ribbon PF08274.7 gi|116754721|ref|YP_843839.1| - 0.062 13.0 0.8 3.4 7.5 0.0 2.7 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zf-TFIIB PF13453.1 gi|116754721|ref|YP_843839.1| - 0.071 12.3 4.6 0.25 10.5 3.2 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|116754721|ref|YP_843839.1| - 0.095 12.6 2.3 0.77 9.7 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|116754721|ref|YP_843839.1| - 0.17 11.7 4.3 1.3 8.8 2.9 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|116754721|ref|YP_843839.1| - 0.17 11.3 5.7 0.65 9.5 0.5 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|116754721|ref|YP_843839.1| - 0.24 11.0 5.7 0.44 10.2 0.2 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-ISL3 PF14690.1 gi|116754721|ref|YP_843839.1| - 0.24 11.4 2.5 2.6 8.1 0.3 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|116754721|ref|YP_843839.1| - 0.3 10.6 10.4 0.54 9.8 3.0 2.5 2 1 1 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|116754721|ref|YP_843839.1| - 0.42 10.4 5.0 2.4 8.0 3.5 2.1 1 1 0 1 1 1 0 Double zinc ribbon Tnp_zf-ribbon_2 PF13842.1 gi|116754721|ref|YP_843839.1| - 8.3 6.9 7.2 91 3.5 5.0 2.3 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon DUF1610 PF07754.6 gi|116754721|ref|YP_843839.1| - 10 6.3 10.8 17 5.6 2.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Hist_deacetyl PF00850.14 gi|116754722|ref|YP_843840.1| - 2e-76 257.2 0.0 2.5e-76 256.9 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain TRM PF02005.11 gi|116754723|ref|YP_843841.1| - 6.6e-106 354.4 0.0 8e-106 354.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|116754723|ref|YP_843841.1| - 4.5e-05 23.1 0.0 6.3e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|116754723|ref|YP_843841.1| - 0.025 13.9 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain HTH_29 PF13551.1 gi|116754723|ref|YP_843841.1| - 0.027 14.6 0.0 1.3 9.2 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix Methyltransf_31 PF13847.1 gi|116754723|ref|YP_843841.1| - 0.045 13.3 0.0 0.074 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|116754723|ref|YP_843841.1| - 0.07 13.1 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|116754723|ref|YP_843841.1| - 0.14 11.5 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DUF3147 PF11345.3 gi|116754724|ref|YP_843842.1| - 0.00084 19.3 10.4 0.00093 19.1 7.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3147) Acyl_transf_3 PF01757.17 gi|116754724|ref|YP_843842.1| - 0.089 11.6 10.8 0.088 11.6 6.9 1.3 1 1 0 1 1 1 0 Acyltransferase family GlpM PF06942.7 gi|116754724|ref|YP_843842.1| - 0.73 10.1 8.5 0.92 9.7 5.9 1.1 1 0 0 1 1 1 0 GlpM protein AzlD PF05437.7 gi|116754724|ref|YP_843842.1| - 2.2 8.2 11.3 3.1 7.8 5.6 2.3 1 1 1 2 2 2 0 Branched-chain amino acid transport protein (AzlD) F420_oxidored PF03807.12 gi|116754725|ref|YP_843843.1| - 8.6e-15 54.9 0.0 1.3e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|116754725|ref|YP_843843.1| - 0.078 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|116754725|ref|YP_843843.1| - 0.082 11.7 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase Methyltransf_31 PF13847.1 gi|116754726|ref|YP_843844.1| - 2.9e-37 127.5 0.0 6.1e-37 126.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|116754726|ref|YP_843844.1| - 1.1e-25 89.9 0.1 8.1e-25 87.1 0.0 2.4 3 0 0 3 3 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|116754726|ref|YP_843844.1| - 5.6e-20 71.4 0.0 1e-19 70.5 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|116754726|ref|YP_843844.1| - 1.6e-17 64.0 0.6 3.9e-17 62.8 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116754726|ref|YP_843844.1| - 1.3e-15 57.4 0.0 2.3e-15 56.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754726|ref|YP_843844.1| - 2e-15 56.9 0.9 7.5e-15 55.1 0.0 2.3 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|116754726|ref|YP_843844.1| - 4.7e-13 49.4 0.0 1.4e-12 47.9 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain PCMT PF01135.14 gi|116754726|ref|YP_843844.1| - 4.3e-12 46.0 0.0 6.9e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|116754726|ref|YP_843844.1| - 6.2e-11 42.3 0.4 1.2e-10 41.4 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain PrmA PF06325.8 gi|116754726|ref|YP_843844.1| - 6e-08 32.1 0.0 8.4e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|116754726|ref|YP_843844.1| - 1.3e-07 31.1 0.0 2.7e-07 30.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|116754726|ref|YP_843844.1| - 1.6e-05 24.1 0.0 2e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|116754726|ref|YP_843844.1| - 2.3e-05 24.1 0.0 4.5e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Hypothetical methyltransferase UPF0020 PF01170.13 gi|116754726|ref|YP_843844.1| - 7.4e-05 22.3 0.0 0.00011 21.7 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|116754726|ref|YP_843844.1| - 0.00045 19.9 0.0 0.0014 18.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|116754726|ref|YP_843844.1| - 0.0018 17.3 0.0 0.0031 16.6 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase GCD14 PF08704.5 gi|116754726|ref|YP_843844.1| - 0.015 14.8 0.0 0.043 13.3 0.0 1.7 2 0 0 2 2 2 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.12 gi|116754726|ref|YP_843844.1| - 0.033 13.2 0.0 0.1 11.6 0.0 1.7 1 1 0 1 1 1 0 Putative methyltransferase Methyltransf_24 PF13578.1 gi|116754726|ref|YP_843844.1| - 0.11 13.3 0.0 0.19 12.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain NNMT_PNMT_TEMT PF01234.12 gi|116754726|ref|YP_843844.1| - 0.12 11.3 0.0 0.94 8.3 0.0 2.0 1 1 1 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_PK PF05891.7 gi|116754726|ref|YP_843844.1| - 0.12 11.6 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Ribosomal_L40e PF01020.12 gi|116754726|ref|YP_843844.1| - 0.15 11.7 0.9 0.29 10.7 0.6 1.4 1 0 0 1 1 1 0 Ribosomal L40e family Fibrillarin PF01269.12 gi|116754726|ref|YP_843844.1| - 0.15 10.9 0.0 0.33 9.8 0.0 1.5 2 0 0 2 2 2 0 Fibrillarin His_biosynth PF00977.16 gi|116754727|ref|YP_843845.1| - 5.5e-78 261.3 0.3 6.3e-78 261.1 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|116754727|ref|YP_843845.1| - 4.5e-08 32.2 0.1 1.4e-05 24.0 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|116754727|ref|YP_843845.1| - 7.3e-08 31.9 2.3 7.6e-05 22.0 0.2 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.9 gi|116754727|ref|YP_843845.1| - 1e-07 31.3 1.1 0.0013 17.8 0.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.12 gi|116754727|ref|YP_843845.1| - 3e-05 23.2 0.2 0.11 11.5 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|116754727|ref|YP_843845.1| - 0.00015 20.8 1.4 0.084 11.7 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|116754727|ref|YP_843845.1| - 0.00057 18.9 0.7 0.19 10.6 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|116754727|ref|YP_843845.1| - 0.019 14.2 0.1 0.037 13.2 0.0 1.5 1 0 0 1 1 1 0 PcrB family TRAM PF01938.15 gi|116754728|ref|YP_843846.1| - 3.1e-14 52.4 0.7 3.7e-14 52.2 0.5 1.1 1 0 0 1 1 1 1 TRAM domain DFP PF04127.10 gi|116754729|ref|YP_843847.1| - 1.7e-50 171.1 0.0 1.7e-49 167.9 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|116754729|ref|YP_843847.1| - 1.5e-30 105.4 0.1 2.8e-30 104.6 0.1 1.4 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|116754729|ref|YP_843847.1| - 0.0021 18.0 0.6 0.0056 16.7 0.1 2.1 2 1 0 2 2 2 1 NADH(P)-binding Glyco_transf_4 PF13439.1 gi|116754729|ref|YP_843847.1| - 0.0025 17.5 0.9 0.7 9.5 0.0 2.8 3 0 0 3 3 3 2 Glycosyltransferase Family 4 Pyr_redox PF00070.22 gi|116754729|ref|YP_843847.1| - 0.028 14.8 0.1 0.13 12.6 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GHMP_kinases_N PF00288.21 gi|116754730|ref|YP_843848.1| - 3.8e-07 30.0 2.4 5.8e-07 29.4 0.8 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|116754730|ref|YP_843848.1| - 0.043 14.0 0.1 0.043 14.0 0.0 2.7 2 1 1 3 3 3 0 GHMP kinases C terminal DUF137 PF02006.11 gi|116754731|ref|YP_843849.1| - 4e-74 247.8 0.1 5.1e-74 247.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 TctB PF07331.6 gi|116754732|ref|YP_843850.1| - 0.017 14.7 1.5 0.021 14.4 1.0 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF552 PF04472.7 gi|116754733|ref|YP_843851.1| - 3.1e-16 59.0 0.6 4e-16 58.7 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) zf-ZPR1 PF03367.8 gi|116754734|ref|YP_843852.1| - 1.6e-41 141.1 0.0 2e-41 140.8 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain DUF1446 PF07287.6 gi|116754734|ref|YP_843852.1| - 0.0071 14.8 0.0 0.011 14.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1446) UPF0052 PF01933.13 gi|116754735|ref|YP_843853.1| - 8.2e-46 156.6 0.0 1.1e-45 156.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 DUF3209 PF11483.3 gi|116754736|ref|YP_843854.1| - 0.081 13.2 0.6 0.096 13.0 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3209) DHH PF01368.15 gi|116754737|ref|YP_843855.1| - 1.1e-12 47.8 0.0 1.6e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|116754737|ref|YP_843855.1| - 2.9e-10 39.7 0.2 6.4e-10 38.5 0.2 1.7 1 0 0 1 1 1 1 DHHA1 domain SelA PF03841.8 gi|116754737|ref|YP_843855.1| - 0.042 12.5 0.0 3.6 6.2 0.0 2.3 2 0 0 2 2 2 0 L-seryl-tRNA selenium transferase tRNA_anti-codon PF01336.20 gi|116754739|ref|YP_843857.1| - 0.00023 20.9 0.3 0.94 9.3 0.0 2.8 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain BEN PF10523.4 gi|116754739|ref|YP_843857.1| - 0.063 13.3 0.0 14 5.8 0.0 2.5 2 0 0 2 2 2 0 BEN domain Miro PF08477.8 gi|116754739|ref|YP_843857.1| - 0.064 13.7 0.0 8.7 6.8 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein Arginosuc_synth PF00764.14 gi|116754741|ref|YP_843859.1| - 1.3e-165 551.2 0.0 1.5e-165 551.0 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|116754741|ref|YP_843859.1| - 0.0023 17.4 0.0 0.0035 16.8 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|116754741|ref|YP_843859.1| - 0.017 14.0 0.0 0.029 13.2 0.0 1.3 1 0 0 1 1 1 0 NAD synthase DUF362 PF04015.7 gi|116754741|ref|YP_843859.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF362) HTH_3 PF01381.17 gi|116754742|ref|YP_843860.1| - 6.1e-12 45.1 0.8 2e-11 43.5 0.4 2.0 2 0 0 2 2 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|116754742|ref|YP_843860.1| - 4.5e-09 36.2 0.4 1.3e-08 34.7 0.1 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|116754742|ref|YP_843860.1| - 1.4e-06 27.8 0.1 6.9e-06 25.6 0.1 2.2 2 0 0 2 2 2 1 HTH domain HTH_31 PF13560.1 gi|116754742|ref|YP_843860.1| - 1.1e-05 25.5 1.2 3.3e-05 23.9 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|116754742|ref|YP_843860.1| - 5.1e-05 22.7 0.0 0.0002 20.8 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain MerR PF00376.18 gi|116754742|ref|YP_843860.1| - 0.00036 20.0 0.3 0.004 16.6 0.1 2.5 2 0 0 2 2 2 1 MerR family regulatory protein HTH_26 PF13443.1 gi|116754742|ref|YP_843860.1| - 0.00087 19.4 0.1 0.0024 18.0 0.0 1.8 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_38 PF13936.1 gi|116754742|ref|YP_843860.1| - 0.00093 18.6 0.1 0.003 17.0 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|116754742|ref|YP_843860.1| - 0.0011 18.7 0.1 0.016 14.9 0.0 2.8 4 0 0 4 4 3 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|116754742|ref|YP_843860.1| - 0.0013 18.2 0.0 0.0034 16.8 0.0 1.8 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|116754742|ref|YP_843860.1| - 0.0018 17.5 1.6 0.0078 15.5 0.3 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|116754742|ref|YP_843860.1| - 0.0029 17.5 0.1 0.0072 16.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|116754742|ref|YP_843860.1| - 0.0033 17.2 0.1 0.0089 15.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MerR_1 PF13411.1 gi|116754742|ref|YP_843860.1| - 0.0084 15.8 0.0 0.027 14.2 0.0 1.9 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_10 PF04967.7 gi|116754742|ref|YP_843860.1| - 0.017 14.7 0.0 0.039 13.5 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_25 PF13413.1 gi|116754742|ref|YP_843860.1| - 0.017 14.7 0.1 0.046 13.3 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|116754742|ref|YP_843860.1| - 0.035 13.7 0.2 0.19 11.4 0.0 2.4 3 0 0 3 3 2 0 MarR family HTH_24 PF13412.1 gi|116754742|ref|YP_843860.1| - 0.036 13.4 0.2 0.14 11.5 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding NUMOD1 PF07453.8 gi|116754742|ref|YP_843860.1| - 0.05 13.4 0.0 0.095 12.5 0.0 1.4 1 0 0 1 1 1 0 NUMOD1 domain HTH_AsnC-type PF13404.1 gi|116754742|ref|YP_843860.1| - 0.051 13.1 0.1 0.12 11.9 0.1 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_ECF PF07638.6 gi|116754742|ref|YP_843860.1| - 0.057 13.0 0.1 0.18 11.4 0.0 1.9 2 0 0 2 2 2 0 ECF sigma factor GntR PF00392.16 gi|116754742|ref|YP_843860.1| - 0.064 12.7 0.1 0.19 11.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_17 PF12728.2 gi|116754742|ref|YP_843860.1| - 0.091 13.0 0.1 0.5 10.6 0.0 2.2 3 0 0 3 3 1 0 Helix-turn-helix domain Phage_CI_repr PF07022.8 gi|116754742|ref|YP_843860.1| - 0.11 12.5 0.0 0.7 10.0 0.0 2.2 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain PRK PF00485.13 gi|116754743|ref|YP_843861.1| - 9.4e-47 159.0 0.0 1.4e-46 158.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|116754743|ref|YP_843861.1| - 4.9e-06 27.3 0.1 1.2e-05 26.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|116754743|ref|YP_843861.1| - 0.00014 21.4 0.1 0.00037 20.1 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|116754743|ref|YP_843861.1| - 0.00021 21.5 0.5 0.0018 18.5 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|116754743|ref|YP_843861.1| - 0.00062 19.7 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|116754743|ref|YP_843861.1| - 0.006 16.2 0.0 0.015 14.9 0.0 1.6 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.1 gi|116754743|ref|YP_843861.1| - 0.016 15.0 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|116754743|ref|YP_843861.1| - 0.02 14.6 0.0 0.042 13.5 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain MobB PF03205.9 gi|116754743|ref|YP_843861.1| - 0.023 14.3 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|116754743|ref|YP_843861.1| - 0.04 13.4 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|116754743|ref|YP_843861.1| - 0.064 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|116754743|ref|YP_843861.1| - 0.11 12.8 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 ABC transporter CbiA PF01656.18 gi|116754743|ref|YP_843861.1| - 0.13 11.6 0.1 0.24 10.7 0.1 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|116754743|ref|YP_843861.1| - 0.14 12.3 0.0 0.38 10.9 0.0 1.8 2 1 0 2 2 1 0 AAA domain AAA_23 PF13476.1 gi|116754743|ref|YP_843861.1| - 0.15 12.3 0.0 0.37 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain IIGP PF05049.8 gi|116754743|ref|YP_843861.1| - 0.15 10.8 0.1 0.23 10.2 0.1 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_21 PF13304.1 gi|116754743|ref|YP_843861.1| - 0.16 11.9 0.0 0.46 10.4 0.0 1.8 2 1 0 2 2 2 0 AAA domain TIP49 PF06068.8 gi|116754743|ref|YP_843861.1| - 0.16 10.6 0.0 0.24 10.0 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus NB-ARC PF00931.17 gi|116754743|ref|YP_843861.1| - 0.16 10.7 0.0 0.26 10.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Nitroreductase PF00881.19 gi|116754744|ref|YP_843862.1| - 3.1e-42 144.1 0.0 3.7e-42 143.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|116754744|ref|YP_843862.1| - 3.4e-05 23.1 0.3 0.018 14.2 0.1 2.8 2 1 0 2 2 2 2 Putative TM nitroreductase Lentiviral_Tat PF02998.9 gi|116754744|ref|YP_843862.1| - 0.018 14.8 0.6 0.033 13.9 0.5 1.5 1 1 0 1 1 1 0 Lentiviral Tat protein TFIIE_alpha PF02002.12 gi|116754745|ref|YP_843863.1| - 1.6e-05 24.3 0.0 2.1e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|116754745|ref|YP_843863.1| - 2.8e-05 23.7 0.0 3.3e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|116754745|ref|YP_843863.1| - 3.4e-05 23.8 0.0 4.2e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_12 PF08461.5 gi|116754745|ref|YP_843863.1| - 4.9e-05 22.9 0.1 0.00012 21.7 0.1 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|116754745|ref|YP_843863.1| - 0.00012 21.8 0.0 0.00014 21.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|116754745|ref|YP_843863.1| - 0.00012 21.6 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|116754745|ref|YP_843863.1| - 0.00013 21.5 0.0 0.0002 20.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HemN_C PF06969.11 gi|116754745|ref|YP_843863.1| - 0.00037 20.4 0.1 0.00054 19.9 0.0 1.2 1 0 0 1 1 1 1 HemN C-terminal domain HTH_24 PF13412.1 gi|116754745|ref|YP_843863.1| - 0.00057 19.2 0.0 0.00086 18.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|116754745|ref|YP_843863.1| - 0.00069 19.8 0.1 0.001 19.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|116754745|ref|YP_843863.1| - 0.00073 19.3 0.0 0.0011 18.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|116754745|ref|YP_843863.1| - 0.0065 16.3 0.0 0.0078 16.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|116754745|ref|YP_843863.1| - 0.029 14.0 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain Ribosomal_S19e PF01090.14 gi|116754745|ref|YP_843863.1| - 0.029 13.7 0.1 0.19 11.1 0.0 1.8 1 1 1 2 2 2 0 Ribosomal protein S19e HTH_Crp_2 PF13545.1 gi|116754745|ref|YP_843863.1| - 0.039 13.7 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|116754745|ref|YP_843863.1| - 0.04 13.9 0.0 0.05 13.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Mrr_N PF14338.1 gi|116754745|ref|YP_843863.1| - 0.044 13.8 0.1 0.095 12.7 0.0 1.6 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_5 PF01022.15 gi|116754745|ref|YP_843863.1| - 0.045 13.4 0.0 0.052 13.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Aldolase_II PF00596.16 gi|116754746|ref|YP_843864.1| - 1.6e-35 122.3 0.0 1.8e-35 122.2 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain TPR_1 PF00515.23 gi|116754747|ref|YP_843865.1| - 2e-56 185.3 8.9 5.6e-10 38.3 0.4 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.1 gi|116754747|ref|YP_843865.1| - 3.6e-46 154.6 12.4 1.1e-15 57.0 2.1 3.1 3 0 0 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|116754747|ref|YP_843865.1| - 1.6e-43 143.0 16.2 3e-08 32.9 0.2 6.4 6 1 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|116754747|ref|YP_843865.1| - 8.9e-33 109.6 5.0 8e-05 22.1 0.0 6.1 5 1 1 6 6 6 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|116754747|ref|YP_843865.1| - 1.5e-30 102.8 10.4 8.3e-05 22.4 0.1 7.0 6 1 0 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|116754747|ref|YP_843865.1| - 1.7e-28 98.6 13.6 9.2e-10 38.9 3.3 3.4 2 1 0 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|116754747|ref|YP_843865.1| - 3.4e-26 90.9 26.9 1.8e-09 37.4 0.6 4.3 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|116754747|ref|YP_843865.1| - 6.6e-25 85.3 15.0 3.1e-06 27.3 1.6 6.1 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|116754747|ref|YP_843865.1| - 7.5e-21 74.2 5.7 1.2e-07 31.9 0.4 3.4 1 1 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|116754747|ref|YP_843865.1| - 4.6e-20 69.7 8.0 0.0065 16.1 0.0 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|116754747|ref|YP_843865.1| - 7.4e-18 64.1 11.2 3.9e-07 29.8 0.4 4.2 1 1 2 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|116754747|ref|YP_843865.1| - 2.4e-13 49.5 2.1 0.3 11.6 0.0 6.2 6 0 0 6 6 6 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|116754747|ref|YP_843865.1| - 2.6e-11 43.4 6.1 3.3e-06 27.1 0.1 3.2 1 1 3 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|116754747|ref|YP_843865.1| - 8.4e-11 41.8 7.4 0.0055 16.5 0.1 5.4 1 1 3 4 4 4 3 Domain of Unknown Function (DUF3856) MIT PF04212.13 gi|116754747|ref|YP_843865.1| - 3.5e-09 36.4 7.2 0.18 11.7 0.0 5.1 3 2 2 5 5 5 2 MIT (microtubule interacting and transport) domain TPR_10 PF13374.1 gi|116754747|ref|YP_843865.1| - 1e-08 34.8 17.3 1.1 9.2 0.0 6.2 6 0 0 6 6 6 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|116754747|ref|YP_843865.1| - 1.9e-08 34.0 3.5 0.071 13.0 0.1 5.1 5 0 0 5 5 5 2 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.12 gi|116754747|ref|YP_843865.1| - 3.4e-07 30.6 8.2 0.0036 17.5 0.7 3.3 1 1 3 4 4 4 3 Bacterial transcriptional activator domain TPR_4 PF07721.9 gi|116754747|ref|YP_843865.1| - 4.9e-06 26.4 10.0 1.4 9.5 0.5 6.3 6 0 0 6 6 6 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|116754747|ref|YP_843865.1| - 1.1e-05 24.4 0.1 0.12 11.1 0.0 3.1 1 1 3 4 4 4 3 NMDA receptor-regulated protein 1 TPR_5 PF12688.2 gi|116754747|ref|YP_843865.1| - 1.4e-05 25.1 1.6 0.00058 19.8 0.1 3.1 1 1 2 3 3 3 1 Tetratrico peptide repeat TPR_15 PF13429.1 gi|116754747|ref|YP_843865.1| - 0.00012 21.2 3.3 0.13 11.3 0.1 3.8 1 1 2 3 3 3 1 Tetratricopeptide repeat PPTA PF01239.17 gi|116754747|ref|YP_843865.1| - 0.0024 17.1 0.4 1.1 8.7 0.0 3.8 3 0 0 3 3 3 1 Protein prenyltransferase alpha subunit repeat FAT PF02259.18 gi|116754747|ref|YP_843865.1| - 0.0066 15.4 0.2 0.34 9.8 0.0 2.7 1 1 2 3 3 3 1 FAT domain Apc5 PF12862.2 gi|116754747|ref|YP_843865.1| - 0.027 14.3 0.3 18 5.2 0.0 4.0 3 2 0 3 3 3 0 Anaphase-promoting complex subunit 5 Coatomer_E PF04733.9 gi|116754747|ref|YP_843865.1| - 0.027 13.6 0.1 4.4 6.3 0.0 2.4 2 1 0 2 2 2 0 Coatomer epsilon subunit NYD-SP12_N PF15015.1 gi|116754747|ref|YP_843865.1| - 0.089 11.0 0.0 0.3 9.2 0.0 1.7 2 0 0 2 2 2 0 Spermatogenesis-associated, N-terminal Sda PF08970.5 gi|116754747|ref|YP_843865.1| - 0.16 11.4 0.5 60 3.2 0.0 3.7 4 0 0 4 4 4 0 Sporulation inhibitor A SHNi-TPR PF10516.4 gi|116754747|ref|YP_843865.1| - 0.19 11.0 2.9 44 3.4 0.0 4.0 4 0 0 4 4 4 0 SHNi-TPR DUF982 PF06169.7 gi|116754747|ref|YP_843865.1| - 0.23 11.1 1.8 21 4.9 0.1 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF982) Cdc6_C PF09079.6 gi|116754748|ref|YP_843866.1| - 9.3e-24 82.9 0.1 2.9e-23 81.3 0.1 1.9 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|116754748|ref|YP_843866.1| - 2.4e-14 53.7 0.9 4e-12 46.4 0.0 3.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|116754748|ref|YP_843866.1| - 1.7e-12 47.5 0.0 4.7e-12 46.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|116754748|ref|YP_843866.1| - 1.5e-09 38.1 0.0 4.8e-09 36.4 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|116754748|ref|YP_843866.1| - 4e-08 33.2 0.1 1.7e-07 31.2 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase DUF2075 PF09848.4 gi|116754748|ref|YP_843866.1| - 5.8e-06 25.5 0.0 8.2e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|116754748|ref|YP_843866.1| - 3e-05 23.7 0.0 6.8e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|116754748|ref|YP_843866.1| - 0.00023 21.9 0.6 0.00058 20.6 0.4 2.0 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|116754748|ref|YP_843866.1| - 0.00025 20.5 0.1 0.00058 19.3 0.0 1.6 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|116754748|ref|YP_843866.1| - 0.00045 19.2 0.0 0.00094 18.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) KAP_NTPase PF07693.9 gi|116754748|ref|YP_843866.1| - 0.00064 18.8 0.3 0.077 11.9 0.0 2.2 1 1 1 2 2 2 1 KAP family P-loop domain Sigma54_activ_2 PF14532.1 gi|116754748|ref|YP_843866.1| - 0.00078 19.4 0.1 0.0066 16.4 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_24 PF13479.1 gi|116754748|ref|YP_843866.1| - 0.0012 18.5 0.9 0.0041 16.7 0.2 2.0 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|116754748|ref|YP_843866.1| - 0.0012 17.7 0.0 0.002 17.0 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain RuvB_N PF05496.7 gi|116754748|ref|YP_843866.1| - 0.0014 17.6 0.0 0.16 11.0 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|116754748|ref|YP_843866.1| - 0.0016 18.7 0.0 0.0089 16.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|116754748|ref|YP_843866.1| - 0.0017 17.3 0.0 0.0037 16.2 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|116754748|ref|YP_843866.1| - 0.0025 17.7 0.0 0.0048 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|116754748|ref|YP_843866.1| - 0.006 15.9 0.0 0.017 14.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|116754748|ref|YP_843866.1| - 0.015 15.2 0.1 0.11 12.4 0.1 2.2 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DEAD PF00270.24 gi|116754748|ref|YP_843866.1| - 0.015 14.7 1.3 1 8.8 0.1 2.5 1 1 0 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.17 gi|116754748|ref|YP_843866.1| - 0.028 14.6 0.0 0.06 13.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.12 gi|116754748|ref|YP_843866.1| - 0.036 13.4 0.1 0.096 12.1 0.0 1.7 2 0 0 2 2 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|116754748|ref|YP_843866.1| - 0.04 13.0 0.1 0.3 10.1 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin ResIII PF04851.10 gi|116754748|ref|YP_843866.1| - 0.047 13.5 0.0 0.11 12.3 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit TIP49 PF06068.8 gi|116754748|ref|YP_843866.1| - 0.05 12.3 0.0 0.15 10.7 0.0 1.8 2 0 0 2 2 2 0 TIP49 C-terminus Bac_DnaA PF00308.13 gi|116754748|ref|YP_843866.1| - 0.054 13.1 0.2 0.16 11.6 0.1 1.9 1 1 0 1 1 1 0 Bacterial dnaA protein Auto_anti-p27 PF06677.7 gi|116754749|ref|YP_843867.1| - 4.7e-10 39.0 0.3 8e-10 38.3 0.2 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0147 PF03685.8 gi|116754750|ref|YP_843868.1| - 3.1e-36 123.1 1.2 3.4e-36 122.9 0.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|116754750|ref|YP_843868.1| - 0.0013 18.8 0.2 1.6 8.9 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0253) Ada_Zn_binding PF02805.11 gi|116754751|ref|YP_843869.1| - 2e-07 30.4 1.2 2.4e-07 30.2 0.2 1.6 2 0 0 2 2 2 1 Metal binding domain of Ada ABC_tran PF00005.22 gi|116754752|ref|YP_843870.1| - 6.4e-34 117.1 0.0 9.5e-34 116.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|116754752|ref|YP_843870.1| - 9.6e-12 44.6 0.6 3.8e-10 39.3 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|116754752|ref|YP_843870.1| - 9.2e-10 38.9 0.2 0.00058 19.9 0.4 2.2 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|116754752|ref|YP_843870.1| - 1.3e-06 28.0 0.8 0.00011 21.7 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|116754752|ref|YP_843870.1| - 1.4e-05 25.1 0.1 0.00016 21.6 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|116754752|ref|YP_843870.1| - 6e-05 22.4 0.2 0.00012 21.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|116754752|ref|YP_843870.1| - 7.3e-05 22.9 0.5 0.0012 18.9 0.3 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|116754752|ref|YP_843870.1| - 0.00014 21.0 0.0 0.00027 20.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MutS_V PF00488.16 gi|116754752|ref|YP_843870.1| - 0.00056 19.3 0.0 0.72 9.2 0.0 2.1 2 0 0 2 2 2 2 MutS domain V AAA_25 PF13481.1 gi|116754752|ref|YP_843870.1| - 0.00092 18.6 0.3 0.0086 15.4 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|116754752|ref|YP_843870.1| - 0.0018 19.1 0.0 0.0067 17.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|116754752|ref|YP_843870.1| - 0.0018 17.9 0.3 0.033 13.9 0.2 2.1 1 1 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|116754752|ref|YP_843870.1| - 0.0033 17.3 0.2 0.0076 16.1 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|116754752|ref|YP_843870.1| - 0.0038 17.5 0.5 0.0064 16.8 0.1 1.6 2 0 0 2 2 1 1 AAA domain KaiC PF06745.8 gi|116754752|ref|YP_843870.1| - 0.007 15.4 0.9 1.3 8.0 0.1 2.2 2 0 0 2 2 2 1 KaiC MMR_HSR1 PF01926.18 gi|116754752|ref|YP_843870.1| - 0.008 16.1 0.2 0.034 14.1 0.0 2.0 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|116754752|ref|YP_843870.1| - 0.0092 15.0 0.2 0.28 10.1 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|116754752|ref|YP_843870.1| - 0.012 15.3 0.0 0.029 14.0 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|116754752|ref|YP_843870.1| - 0.014 14.3 0.4 0.029 13.2 0.1 1.6 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA PF00004.24 gi|116754752|ref|YP_843870.1| - 0.016 15.3 0.3 2.4 8.3 0.1 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Bclx_interact PF08945.5 gi|116754752|ref|YP_843870.1| - 0.025 14.1 0.1 0.081 12.4 0.0 1.8 2 0 0 2 2 2 0 Bcl-x interacting, BH3 domain NACHT PF05729.7 gi|116754752|ref|YP_843870.1| - 0.028 14.0 0.2 0.098 12.3 0.0 1.8 2 0 0 2 2 2 0 NACHT domain cobW PF02492.14 gi|116754752|ref|YP_843870.1| - 0.047 13.1 0.1 0.27 10.6 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FtsK_SpoIIIE PF01580.13 gi|116754752|ref|YP_843870.1| - 0.062 12.7 0.1 0.18 11.2 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|116754752|ref|YP_843870.1| - 0.072 12.6 0.0 0.27 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|116754752|ref|YP_843870.1| - 0.077 13.2 0.0 0.28 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|116754752|ref|YP_843870.1| - 0.09 12.6 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.17 gi|116754752|ref|YP_843870.1| - 0.1 11.4 0.4 0.2 10.4 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_19 PF13245.1 gi|116754752|ref|YP_843870.1| - 0.22 11.3 0.8 0.52 10.1 0.1 2.0 2 0 0 2 2 1 0 Part of AAA domain UDPG_MGDP_dh_N PF03721.9 gi|116754753|ref|YP_843871.1| - 4.7e-37 127.1 0.0 6.9e-37 126.6 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|116754753|ref|YP_843871.1| - 3.6e-17 62.3 0.0 6.1e-17 61.6 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|116754753|ref|YP_843871.1| - 0.00063 19.8 0.0 0.0012 18.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|116754753|ref|YP_843871.1| - 0.0059 16.4 0.0 0.054 13.3 0.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|116754753|ref|YP_843871.1| - 0.017 14.8 0.0 0.055 13.1 0.0 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|116754753|ref|YP_843871.1| - 0.035 13.2 0.0 20 4.2 0.0 3.0 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_26 PF13659.1 gi|116754753|ref|YP_843871.1| - 0.097 12.7 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Hexapep PF00132.19 gi|116754754|ref|YP_843872.1| - 5.5e-29 98.3 13.7 4.5e-10 38.5 0.2 3.2 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|116754754|ref|YP_843872.1| - 1.5e-16 59.6 10.4 2.4e-07 30.2 0.8 3.5 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase Acetyltransf_11 PF13720.1 gi|116754754|ref|YP_843872.1| - 0.0086 16.2 0.4 0.015 15.5 0.3 1.3 1 0 0 1 1 1 1 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF2613 PF11021.3 gi|116754754|ref|YP_843872.1| - 0.11 12.1 0.4 0.25 11.0 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) GFO_IDH_MocA PF01408.17 gi|116754755|ref|YP_843873.1| - 9.6e-22 77.7 0.1 1.7e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|116754755|ref|YP_843873.1| - 2.3e-07 30.7 0.0 3.7e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|116754755|ref|YP_843873.1| - 4.2e-06 26.0 0.0 8.3e-06 25.0 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|116754755|ref|YP_843873.1| - 0.0003 21.1 0.0 0.0011 19.3 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.14 gi|116754755|ref|YP_843873.1| - 0.00065 20.1 0.0 0.0013 19.2 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain IlvN PF07991.7 gi|116754755|ref|YP_843873.1| - 0.00084 18.7 0.0 0.0021 17.4 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain OCD_Mu_crystall PF02423.10 gi|116754755|ref|YP_843873.1| - 0.014 14.2 0.0 0.023 13.4 0.0 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Saccharop_dh PF03435.13 gi|116754755|ref|YP_843873.1| - 0.061 12.2 1.3 0.28 10.0 0.9 2.1 1 1 0 1 1 1 0 Saccharopine dehydrogenase DegT_DnrJ_EryC1 PF01041.12 gi|116754756|ref|YP_843874.1| - 2.3e-127 424.9 0.0 2.6e-127 424.8 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|116754756|ref|YP_843874.1| - 6.6e-07 28.5 0.0 1.1e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|116754756|ref|YP_843874.1| - 2.2e-06 27.0 0.0 7.9e-06 25.2 0.0 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|116754756|ref|YP_843874.1| - 0.00052 18.4 0.0 0.0008 17.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|116754756|ref|YP_843874.1| - 0.0015 17.3 0.0 0.0022 16.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V MFS_1 PF07690.11 gi|116754757|ref|YP_843875.1| - 9.7e-28 96.8 48.6 2.1e-15 56.2 12.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily UNC-93 PF05978.11 gi|116754757|ref|YP_843875.1| - 2.5 7.5 16.8 0.016 14.6 3.5 2.8 1 1 2 3 3 3 0 Ion channel regulatory protein UNC-93 DUF2202 PF09968.4 gi|116754758|ref|YP_843876.1| - 1.3e-56 190.7 0.2 1.9e-56 190.2 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DOMON PF03351.12 gi|116754758|ref|YP_843876.1| - 1.4e-27 96.1 0.0 2.4e-27 95.3 0.0 1.4 1 0 0 1 1 1 1 DOMON domain Ferritin_2 PF13668.1 gi|116754758|ref|YP_843876.1| - 0.029 14.3 0.0 0.047 13.6 0.0 1.3 1 0 0 1 1 1 0 Ferritin-like domain Rubrerythrin PF02915.12 gi|116754758|ref|YP_843876.1| - 0.081 13.2 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Rubrerythrin DUF3952 PF13130.1 gi|116754759|ref|YP_843877.1| - 0.66 9.9 3.0 6.1 6.8 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3952) FNIP_C PF14638.1 gi|116754759|ref|YP_843877.1| - 0.67 9.2 6.0 2.4 7.4 2.6 2.1 1 1 1 2 2 2 0 Folliculin-interacting protein C-terminus DUF11 PF01345.13 gi|116754760|ref|YP_843878.1| - 0.0059 16.6 0.5 0.019 14.9 0.1 2.0 1 1 1 2 2 2 1 Domain of unknown function DUF11 Voltage_CLC PF00654.15 gi|116754761|ref|YP_843879.1| - 5.8e-94 315.0 33.1 5.8e-94 315.0 22.9 2.0 2 0 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.23 gi|116754761|ref|YP_843879.1| - 3.9e-25 87.3 5.9 2.2e-12 46.5 0.6 2.5 2 0 0 2 2 2 2 CBS domain Pox_P21 PF05313.7 gi|116754761|ref|YP_843879.1| - 0.0022 17.3 0.7 0.0046 16.2 0.5 1.5 1 0 0 1 1 1 1 Poxvirus P21 membrane protein DUF3366 PF11846.3 gi|116754761|ref|YP_843879.1| - 0.11 12.3 1.5 0.13 12.0 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3366) tRNA-synt_1c PF00749.16 gi|116754762|ref|YP_843880.1| - 2.2e-63 213.7 0.0 3e-63 213.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|116754762|ref|YP_843880.1| - 6.4e-25 87.8 0.0 9.6e-25 87.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain NUDIX PF00293.23 gi|116754763|ref|YP_843881.1| - 1.8e-23 82.6 0.0 2e-23 82.5 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|116754763|ref|YP_843881.1| - 0.079 12.3 0.0 0.14 11.5 0.0 1.3 2 0 0 2 2 2 0 NUDIX domain Pterin_bind PF00809.17 gi|116754764|ref|YP_843882.1| - 9.5e-44 149.2 0.1 1.5e-43 148.6 0.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme F420_ligase PF01996.11 gi|116754765|ref|YP_843883.1| - 8.3e-66 221.3 0.0 1.2e-65 220.8 0.0 1.2 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.17 gi|116754765|ref|YP_843883.1| - 2.8e-15 55.8 0.1 5e-15 54.9 0.1 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|116754765|ref|YP_843883.1| - 6.7e-11 42.2 0.2 1.4e-10 41.2 0.1 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|116754765|ref|YP_843883.1| - 0.0088 15.4 3.0 1 8.7 0.3 2.3 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases DUF128 PF01995.11 gi|116754766|ref|YP_843884.1| - 4.1e-82 274.6 0.0 4.7e-82 274.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 E1-E2_ATPase PF00122.15 gi|116754767|ref|YP_843885.1| - 5.2e-58 195.7 0.1 1.1e-57 194.7 0.1 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|116754767|ref|YP_843885.1| - 6.3e-31 108.4 0.0 1.5e-30 107.2 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|116754767|ref|YP_843885.1| - 4.1e-27 94.8 9.7 4.1e-27 94.8 6.8 1.8 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus HAD PF12710.2 gi|116754767|ref|YP_843885.1| - 2.4e-15 57.1 0.0 4.5e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|116754767|ref|YP_843885.1| - 4.6e-08 32.4 0.0 1.3e-07 30.9 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|116754767|ref|YP_843885.1| - 2.5e-06 27.3 0.0 4.7e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|116754767|ref|YP_843885.1| - 6.4e-06 25.9 0.0 0.0016 18.0 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase TerC PF03741.11 gi|116754768|ref|YP_843886.1| - 6.1e-55 185.5 11.6 6.1e-55 185.5 8.0 2.1 3 0 0 3 3 3 1 Integral membrane protein TerC family dTMP_synthase PF02593.9 gi|116754769|ref|YP_843887.1| - 3e-73 245.7 0.0 3.5e-73 245.5 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase TPR_1 PF00515.23 gi|116754770|ref|YP_843888.1| - 1.6e-33 112.8 8.0 1.4e-12 46.6 0.1 3.6 4 0 0 4 4 3 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|116754770|ref|YP_843888.1| - 8.9e-30 100.1 11.3 1.4e-10 40.2 0.1 4.4 4 1 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|116754770|ref|YP_843888.1| - 2.6e-28 97.4 9.5 6.3e-19 67.3 0.2 2.2 1 1 0 2 2 2 2 TPR repeat TPR_12 PF13424.1 gi|116754770|ref|YP_843888.1| - 7.8e-24 83.4 19.1 4.4e-11 42.5 0.3 3.5 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|116754770|ref|YP_843888.1| - 4.2e-21 73.0 5.4 1.5e-05 24.4 0.1 4.1 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|116754770|ref|YP_843888.1| - 5.6e-19 66.6 6.9 1.6e-06 27.8 0.0 4.3 5 0 0 5 5 4 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|116754770|ref|YP_843888.1| - 5.9e-15 55.4 11.1 7.5e-11 42.3 0.1 2.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|116754770|ref|YP_843888.1| - 1.2e-12 46.6 6.5 0.0041 16.8 0.0 4.3 4 1 1 5 5 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|116754770|ref|YP_843888.1| - 1.6e-12 46.8 14.3 2.6e-05 24.4 0.1 5.0 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|116754770|ref|YP_843888.1| - 3.3e-12 46.5 3.9 3.9e-07 30.3 0.0 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|116754770|ref|YP_843888.1| - 3.8e-12 45.8 4.3 9.7e-07 28.5 1.6 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|116754770|ref|YP_843888.1| - 3e-09 36.4 11.9 0.003 17.4 0.1 4.8 4 1 1 5 5 5 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|116754770|ref|YP_843888.1| - 1.3e-08 34.0 0.9 5.9e-05 22.0 0.0 2.0 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 Apc3 PF12895.2 gi|116754770|ref|YP_843888.1| - 3.1e-07 30.4 1.4 0.0026 17.8 0.0 2.2 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|116754770|ref|YP_843888.1| - 4.6e-06 26.5 3.1 0.56 10.0 0.0 4.0 1 1 1 2 2 2 2 Domain of Unknown Function (DUF3856) TPR_6 PF13174.1 gi|116754770|ref|YP_843888.1| - 5.2e-06 26.5 10.2 1.3 9.6 0.0 5.0 4 1 1 5 5 5 2 Tetratricopeptide repeat MIT PF04212.13 gi|116754770|ref|YP_843888.1| - 6.4e-06 25.9 5.4 0.17 11.7 0.2 3.5 3 2 0 3 3 3 2 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.1 gi|116754770|ref|YP_843888.1| - 1.2e-05 25.1 0.4 1.5 8.7 0.0 3.4 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_4 PF07721.9 gi|116754770|ref|YP_843888.1| - 0.00081 19.5 10.8 0.52 10.9 0.7 5.1 6 0 0 6 6 5 2 Tetratricopeptide repeat FAT PF02259.18 gi|116754770|ref|YP_843888.1| - 0.001 18.1 0.2 0.6 9.0 0.0 2.6 1 1 2 3 3 3 2 FAT domain BTAD PF03704.12 gi|116754770|ref|YP_843888.1| - 0.012 15.8 3.4 0.039 14.2 0.1 2.5 1 1 2 3 3 3 0 Bacterial transcriptional activator domain PPR PF01535.15 gi|116754770|ref|YP_843888.1| - 0.019 14.9 2.4 33 4.7 0.1 3.9 4 0 0 4 4 4 0 PPR repeat RPN7 PF10602.4 gi|116754770|ref|YP_843888.1| - 0.041 13.2 0.6 0.6 9.4 0.3 2.6 1 1 0 1 1 1 0 26S proteasome subunit RPN7 TPR_3 PF07720.7 gi|116754770|ref|YP_843888.1| - 0.044 13.5 1.0 7.2 6.5 0.0 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|116754770|ref|YP_843888.1| - 0.12 11.5 0.0 4.5 6.3 0.0 2.2 1 1 1 2 2 2 0 Coatomer epsilon subunit AP2 PF00847.15 gi|116754770|ref|YP_843888.1| - 1.4 9.1 4.7 4.8 7.4 0.1 2.9 3 0 0 3 3 3 0 AP2 domain PrmA PF06325.8 gi|116754771|ref|YP_843889.1| - 0.0071 15.4 0.0 0.01 14.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|116754771|ref|YP_843889.1| - 0.15 12.0 0.0 0.55 10.2 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain MutS_V PF00488.16 gi|116754772|ref|YP_843890.1| - 1.8e-97 325.3 0.0 2.7e-97 324.8 0.0 1.2 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|116754772|ref|YP_843890.1| - 3.6e-50 170.5 1.2 7.4e-50 169.5 0.8 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.15 gi|116754772|ref|YP_843890.1| - 9.5e-44 148.0 0.0 4.5e-43 145.8 0.0 2.0 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.13 gi|116754772|ref|YP_843890.1| - 1.3e-32 111.7 0.3 4.3e-32 110.1 0.0 2.1 2 0 0 2 2 2 1 MutS family domain IV MutS_II PF05188.12 gi|116754772|ref|YP_843890.1| - 4.2e-14 52.7 0.0 1.5e-12 47.7 0.0 3.0 2 1 0 2 2 2 1 MutS domain II AAA_29 PF13555.1 gi|116754772|ref|YP_843890.1| - 0.014 14.8 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|116754772|ref|YP_843890.1| - 0.045 13.6 0.0 0.35 10.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain MutL_C PF08676.6 gi|116754773|ref|YP_843891.1| - 5.2e-36 123.4 0.0 9.2e-36 122.6 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|116754773|ref|YP_843891.1| - 9.6e-34 115.3 0.0 1.5e-33 114.7 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|116754773|ref|YP_843891.1| - 1e-10 41.4 0.0 1.8e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|116754773|ref|YP_843891.1| - 1.1e-10 41.2 0.1 3.2e-10 39.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UDG PF03167.14 gi|116754774|ref|YP_843892.1| - 1.4e-37 128.5 0.0 1.7e-37 128.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily PBP_like_2 PF12849.2 gi|116754775|ref|YP_843893.1| - 2.7e-45 155.0 5.0 7.2e-45 153.6 3.5 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|116754775|ref|YP_843893.1| - 5.2e-25 87.5 0.1 6.9e-25 87.1 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|116754775|ref|YP_843893.1| - 1.1e-05 25.2 0.1 2.1e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|116754775|ref|YP_843893.1| - 0.065 12.9 1.3 0.16 11.6 0.9 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF87 PF01935.12 gi|116754777|ref|YP_843895.1| - 6.1e-22 78.5 0.1 1.2e-21 77.6 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|116754777|ref|YP_843895.1| - 2.2e-20 73.2 0.8 1.2e-17 64.3 0.6 2.2 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|116754777|ref|YP_843895.1| - 0.00013 20.7 0.4 0.035 12.7 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|116754777|ref|YP_843895.1| - 0.00046 19.7 0.1 0.0014 18.1 0.0 1.8 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF853 PF05872.7 gi|116754777|ref|YP_843895.1| - 0.0025 16.2 0.4 0.012 14.0 0.1 2.1 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|116754777|ref|YP_843895.1| - 0.019 14.4 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Metallophos_2 PF12850.2 gi|116754778|ref|YP_843896.1| - 1.3e-17 64.0 0.1 1.8e-17 63.5 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|116754778|ref|YP_843896.1| - 4.4e-17 62.1 0.7 7.3e-17 61.4 0.5 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase SbcD_C PF12320.3 gi|116754778|ref|YP_843896.1| - 0.00051 20.0 0.5 0.0032 17.4 0.3 2.3 3 0 0 3 3 3 1 Type 5 capsule protein repressor C-terminal domain Metallophos_3 PF14582.1 gi|116754778|ref|YP_843896.1| - 0.012 14.7 0.0 0.25 10.4 0.0 2.2 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily HAD PF12710.2 gi|116754778|ref|YP_843896.1| - 0.094 12.8 0.0 0.24 11.5 0.0 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase SMC_N PF02463.14 gi|116754779|ref|YP_843897.1| - 1.4e-22 80.0 0.0 2.3e-22 79.2 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|116754779|ref|YP_843897.1| - 1.9e-15 57.7 23.4 1.9e-15 57.7 16.2 6.7 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|116754779|ref|YP_843897.1| - 2.2e-07 30.2 0.0 5.2e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|116754779|ref|YP_843897.1| - 1.2e-06 27.8 7.7 0.00091 18.3 4.0 3.4 2 1 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|116754779|ref|YP_843897.1| - 3.3e-06 26.9 0.0 8.6e-06 25.5 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_21 PF13304.1 gi|116754779|ref|YP_843897.1| - 6e-05 23.1 11.2 0.00055 19.9 0.0 3.9 3 2 0 4 4 4 2 AAA domain ABC_tran PF00005.22 gi|116754779|ref|YP_843897.1| - 0.0022 18.2 0.0 0.0022 18.2 0.0 4.4 4 3 0 4 4 4 1 ABC transporter AAA_19 PF13245.1 gi|116754779|ref|YP_843897.1| - 0.06 13.1 0.0 0.22 11.2 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain MukB PF04310.7 gi|116754779|ref|YP_843897.1| - 0.097 11.9 0.3 0.96 8.7 0.0 2.7 3 0 0 3 3 3 0 MukB N-terminal DUF1957 PF09210.6 gi|116754780|ref|YP_843898.1| - 0.014 15.4 0.4 0.018 15.0 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1957) Cytochrom_B_N PF00033.14 gi|116754781|ref|YP_843899.1| - 0.012 14.9 7.1 0.027 13.8 4.9 1.5 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|116754781|ref|YP_843899.1| - 0.027 13.8 3.6 0.04 13.3 2.5 1.3 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 DUF3488 PF11992.3 gi|116754781|ref|YP_843899.1| - 0.13 10.8 6.1 0.14 10.7 4.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) BCHF PF07284.6 gi|116754781|ref|YP_843899.1| - 0.7 9.7 5.7 1 9.1 0.3 2.1 1 1 1 2 2 2 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) MFS_1 PF07690.11 gi|116754782|ref|YP_843900.1| - 2.7e-18 65.8 19.7 3.3e-18 65.5 13.7 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily ATG22 PF11700.3 gi|116754782|ref|YP_843900.1| - 1.9e-05 23.3 11.0 2.8e-05 22.8 7.7 1.3 1 0 0 1 1 1 1 Vacuole effluxer Atg22 like MFS_3 PF05977.8 gi|116754782|ref|YP_843900.1| - 0.00078 17.6 6.0 0.00099 17.3 4.1 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|116754782|ref|YP_843900.1| - 0.082 11.4 14.3 0.2 10.2 1.3 2.0 1 1 1 2 2 2 0 Sugar (and other) transporter YqzM PF14141.1 gi|116754782|ref|YP_843900.1| - 2.6 7.8 4.5 1.3 8.8 1.1 2.0 2 0 0 2 2 2 0 YqzM-like protein tRNA_anti-codon PF01336.20 gi|116754783|ref|YP_843901.1| - 4.1e-09 36.1 0.0 3e-08 33.3 0.1 2.4 3 0 0 3 3 3 1 OB-fold nucleic acid binding domain DHH PF01368.15 gi|116754783|ref|YP_843901.1| - 1.1e-08 34.8 0.2 2e-08 34.0 0.2 1.4 1 0 0 1 1 1 1 DHH family DnaJ_CXXCXGXG PF00684.14 gi|116754783|ref|YP_843901.1| - 2.8e-06 27.2 24.1 8.1e-06 25.7 8.8 3.2 1 1 2 3 3 3 2 DnaJ central domain S1 PF00575.18 gi|116754783|ref|YP_843901.1| - 7.8e-05 22.6 0.1 0.0003 20.7 0.0 2.0 2 0 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|116754783|ref|YP_843901.1| - 0.0034 17.1 0.0 0.018 14.8 0.0 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain PHF5 PF03660.9 gi|116754783|ref|YP_843901.1| - 0.011 15.8 5.2 0.011 15.8 3.6 2.7 2 1 1 3 3 3 0 PHF5-like protein DZR PF12773.2 gi|116754783|ref|YP_843901.1| - 0.11 12.3 16.9 1.4e+03 -0.9 11.7 3.1 1 1 0 1 1 1 0 Double zinc ribbon zf-C4pol PF14260.1 gi|116754783|ref|YP_843901.1| - 0.68 9.9 11.9 0.99 9.4 1.0 3.4 2 1 1 3 3 3 0 C4-type zinc-finger of DNA polymerase delta Radical_SAM PF04055.16 gi|116754784|ref|YP_843902.1| - 1.8e-17 64.0 0.1 6.5e-17 62.1 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|116754784|ref|YP_843902.1| - 3e-07 30.6 1.0 3.8e-07 30.3 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|116754784|ref|YP_843902.1| - 2.2e-05 24.4 0.2 5.9e-05 23.0 0.2 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain TctA PF01970.11 gi|116754786|ref|YP_843904.1| - 2.5e-73 246.9 38.6 2.8e-73 246.7 26.8 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family PAS_9 PF13426.1 gi|116754787|ref|YP_843905.1| - 1.3e-55 186.1 0.0 1.5e-14 54.2 0.0 4.7 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.5 gi|116754787|ref|YP_843905.1| - 1.5e-45 153.7 1.0 6.3e-13 48.7 0.1 5.0 4 1 0 4 4 4 4 PAS fold PAS PF00989.19 gi|116754787|ref|YP_843905.1| - 1.2e-44 150.6 0.0 1.7e-11 43.8 0.0 5.8 6 1 0 6 6 5 4 PAS fold PAS_3 PF08447.6 gi|116754787|ref|YP_843905.1| - 2.7e-42 142.7 0.3 4.8e-12 45.8 0.0 6.1 5 1 0 5 5 5 4 PAS fold PAS_8 PF13188.1 gi|116754787|ref|YP_843905.1| - 7.5e-31 104.9 0.3 1.9e-07 30.6 0.0 4.8 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|116754787|ref|YP_843905.1| - 9.5e-23 80.0 0.0 2e-22 79.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|116754787|ref|YP_843905.1| - 3.2e-11 43.0 0.1 3.2e-11 43.0 0.1 2.4 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.1 gi|116754787|ref|YP_843905.1| - 7.1e-10 38.8 0.0 0.15 12.0 0.0 4.7 6 0 0 6 6 6 3 PAS domain PAS_7 PF12860.2 gi|116754787|ref|YP_843905.1| - 1.5e-07 31.4 1.5 0.099 12.6 0.0 5.8 5 3 0 5 5 5 1 PAS fold HATPase_c_3 PF13589.1 gi|116754787|ref|YP_843905.1| - 0.00076 19.1 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|116754787|ref|YP_843905.1| - 0.0021 18.2 0.0 40 4.5 0.0 4.2 4 0 0 4 4 4 0 PAS domain HATPase_c_5 PF14501.1 gi|116754787|ref|YP_843905.1| - 0.023 14.4 0.0 0.054 13.2 0.0 1.6 1 0 0 1 1 1 0 GHKL domain TPR_14 PF13428.1 gi|116754787|ref|YP_843905.1| - 0.025 15.2 2.0 15 6.5 0.0 3.8 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|116754787|ref|YP_843905.1| - 0.052 13.3 0.0 12 5.9 0.0 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|116754787|ref|YP_843905.1| - 0.062 13.6 0.0 0.62 10.4 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF3450 PF11932.3 gi|116754787|ref|YP_843905.1| - 0.35 10.1 2.5 9.4 5.4 0.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) Cyclophil_like PF04126.8 gi|116754788|ref|YP_843906.1| - 4.9e-38 129.4 0.0 5.6e-38 129.2 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like DUF3830 PF12903.2 gi|116754788|ref|YP_843906.1| - 0.00083 18.7 0.0 0.0011 18.4 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3830) B5 PF03484.10 gi|116754789|ref|YP_843907.1| - 2.4e-16 59.3 0.0 6.4e-16 57.9 0.0 1.8 1 0 0 1 1 1 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|116754789|ref|YP_843907.1| - 3.6e-12 46.0 0.0 5.8e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|116754789|ref|YP_843907.1| - 0.0002 20.6 0.1 0.0019 17.4 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.15 gi|116754790|ref|YP_843908.1| - 6.5e-95 317.0 0.0 8.4e-95 316.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HTH_45 PF14947.1 gi|116754790|ref|YP_843908.1| - 1.9e-09 37.1 0.0 0.00049 19.8 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix HTH_27 PF13463.1 gi|116754790|ref|YP_843908.1| - 8.5e-06 26.0 0.3 0.13 12.6 0.0 3.0 3 0 0 3 3 2 2 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|116754790|ref|YP_843908.1| - 0.00052 19.6 0.0 0.028 14.0 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) tRNA-synt_2 PF00152.15 gi|116754790|ref|YP_843908.1| - 0.00052 18.8 0.5 0.062 12.0 0.0 3.1 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) HTH_24 PF13412.1 gi|116754790|ref|YP_843908.1| - 0.00073 18.8 0.3 0.0017 17.6 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|116754790|ref|YP_843908.1| - 0.0033 17.4 0.1 0.47 10.5 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain tRNA-synt_2b PF00587.20 gi|116754790|ref|YP_843908.1| - 0.0042 16.6 0.2 0.012 15.1 0.1 1.9 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Mrr_N PF14338.1 gi|116754790|ref|YP_843908.1| - 0.0058 16.6 0.3 1.1 9.3 0.0 2.8 2 1 0 2 2 2 1 Mrr N-terminal domain HemN_C PF06969.11 gi|116754790|ref|YP_843908.1| - 0.0076 16.2 0.1 0.15 12.1 0.0 3.0 3 0 0 3 3 3 1 HemN C-terminal domain HTH_20 PF12840.2 gi|116754790|ref|YP_843908.1| - 0.0079 15.9 0.5 0.027 14.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|116754790|ref|YP_843908.1| - 0.012 15.2 0.1 1.6 8.5 0.0 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|116754790|ref|YP_843908.1| - 0.03 13.9 0.6 0.55 9.9 0.1 2.6 2 0 0 2 2 2 0 MarR family DUF2250 PF10007.4 gi|116754790|ref|YP_843908.1| - 0.036 13.9 0.0 0.52 10.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) GerE PF00196.14 gi|116754790|ref|YP_843908.1| - 0.044 13.1 0.0 0.14 11.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF4423 PF14394.1 gi|116754790|ref|YP_843908.1| - 0.05 13.1 0.2 2 7.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) AAA_assoc_C PF09821.4 gi|116754790|ref|YP_843908.1| - 0.085 13.1 0.3 0.21 11.8 0.0 1.8 2 0 0 2 2 1 0 C-terminal AAA-associated domain HTH_Crp_2 PF13545.1 gi|116754790|ref|YP_843908.1| - 0.1 12.3 0.0 0.49 10.2 0.0 2.1 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain MarR PF01047.17 gi|116754790|ref|YP_843908.1| - 0.11 12.1 0.1 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 MarR family Creatininase PF02633.9 gi|116754791|ref|YP_843909.1| - 5.6e-60 202.3 0.0 6.3e-60 202.2 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase STT3 PF02516.9 gi|116754792|ref|YP_843910.1| - 9.9e-29 100.6 24.2 2e-28 99.6 16.8 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Prenyltransf PF01255.14 gi|116754793|ref|YP_843911.1| - 2.2e-32 111.9 0.0 6.2e-31 107.2 0.0 2.0 2 0 0 2 2 2 2 Putative undecaprenyl diphosphate synthase DUF92 PF01940.11 gi|116754794|ref|YP_843912.1| - 2.6e-69 232.8 12.9 2.6e-69 232.8 9.0 2.4 2 1 1 3 3 3 1 Integral membrane protein DUF92 DUF3959 PF13105.1 gi|116754794|ref|YP_843912.1| - 0.12 11.7 2.6 0.34 10.1 1.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3959) Shikimate_dh_N PF08501.6 gi|116754795|ref|YP_843913.1| - 7.4e-26 90.0 0.0 1.4e-25 89.0 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|116754795|ref|YP_843913.1| - 8e-17 61.5 0.0 1.2e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|116754795|ref|YP_843913.1| - 3.2e-06 27.4 0.1 7.8e-06 26.2 0.0 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|116754795|ref|YP_843913.1| - 0.00057 19.0 0.0 0.00085 18.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|116754795|ref|YP_843913.1| - 0.0028 16.6 0.1 0.0042 16.1 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|116754795|ref|YP_843913.1| - 0.0033 17.4 0.3 0.0049 16.9 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding FAD_binding_2 PF00890.19 gi|116754795|ref|YP_843913.1| - 0.0036 16.1 0.0 0.0053 15.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain IlvN PF07991.7 gi|116754795|ref|YP_843913.1| - 0.0062 15.9 0.0 0.015 14.6 0.0 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|116754795|ref|YP_843913.1| - 0.02 15.1 0.0 0.035 14.3 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Thi4 PF01946.12 gi|116754795|ref|YP_843913.1| - 0.023 13.7 0.2 0.37 9.8 0.0 2.1 2 0 0 2 2 2 0 Thi4 family NAD_binding_2 PF03446.10 gi|116754795|ref|YP_843913.1| - 0.048 13.5 0.0 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|116754795|ref|YP_843913.1| - 0.067 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.7 gi|116754795|ref|YP_843913.1| - 0.12 11.2 0.1 0.16 10.8 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein PDH PF02153.12 gi|116754796|ref|YP_843914.1| - 3.6e-47 160.4 0.0 4.2e-47 160.2 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|116754796|ref|YP_843914.1| - 7.2e-05 23.1 0.0 0.00014 22.1 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|116754796|ref|YP_843914.1| - 0.00011 21.4 0.0 0.00021 20.5 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|116754796|ref|YP_843914.1| - 0.00037 20.3 0.0 0.00059 19.7 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|116754796|ref|YP_843914.1| - 0.00084 19.1 0.1 1.4 8.6 0.0 2.5 2 1 1 3 3 3 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Glyco_trans_4_4 PF13579.1 gi|116754796|ref|YP_843914.1| - 0.02 15.0 4.0 1.4 9.0 0.1 2.5 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain IlvN PF07991.7 gi|116754796|ref|YP_843914.1| - 0.026 13.8 0.0 0.039 13.3 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_10 PF13460.1 gi|116754796|ref|YP_843914.1| - 0.086 12.8 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 NADH(P)-binding Glyco_hydro_15 PF00723.16 gi|116754797|ref|YP_843915.1| - 7.5e-12 44.5 0.3 7.4e-08 31.3 0.0 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|116754797|ref|YP_843915.1| - 0.00017 20.4 0.0 0.00034 19.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF608 ADK PF00406.17 gi|116754798|ref|YP_843916.1| - 1.9e-60 203.1 0.0 2.2e-60 202.8 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|116754798|ref|YP_843916.1| - 1.8e-16 59.5 4.8 3.6e-16 58.5 3.3 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|116754798|ref|YP_843916.1| - 4.2e-10 40.5 0.3 2.4e-09 38.0 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|116754798|ref|YP_843916.1| - 9.2e-08 32.0 0.0 1.9e-07 31.0 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|116754798|ref|YP_843916.1| - 2e-06 28.1 0.3 2.6e-05 24.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|116754798|ref|YP_843916.1| - 3.4e-05 23.3 0.0 0.00065 19.1 0.0 2.1 1 1 1 2 2 2 1 Thymidylate kinase AAA PF00004.24 gi|116754798|ref|YP_843916.1| - 0.00041 20.5 0.1 0.0011 19.1 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|116754798|ref|YP_843916.1| - 0.0076 15.3 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Zeta_toxin PF06414.7 gi|116754798|ref|YP_843916.1| - 0.014 14.5 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SKI PF01202.17 gi|116754798|ref|YP_843916.1| - 0.023 14.5 0.2 0.31 10.8 0.0 2.3 3 0 0 3 3 3 0 Shikimate kinase AAA_28 PF13521.1 gi|116754798|ref|YP_843916.1| - 0.03 14.2 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|116754798|ref|YP_843916.1| - 0.031 13.5 0.0 0.047 12.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|116754798|ref|YP_843916.1| - 0.034 13.8 0.1 0.093 12.4 0.0 1.7 2 0 0 2 2 2 0 NTPase ABC_tran PF00005.22 gi|116754798|ref|YP_843916.1| - 0.068 13.4 0.0 0.083 13.1 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_5 PF07728.9 gi|116754798|ref|YP_843916.1| - 0.084 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|116754798|ref|YP_843916.1| - 0.11 12.0 0.0 1.6 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain Cytidylate_kin2 PF13189.1 gi|116754798|ref|YP_843916.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.6 1 1 0 1 1 1 0 Cytidylate kinase-like family HSP33 PF01430.14 gi|116754798|ref|YP_843916.1| - 0.12 11.4 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Hsp33 protein AAA_22 PF13401.1 gi|116754798|ref|YP_843916.1| - 0.14 12.2 0.0 0.19 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|116754798|ref|YP_843916.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain FeoA PF04023.9 gi|116754799|ref|YP_843917.1| - 9.7e-14 51.0 0.0 1.1e-13 50.9 0.0 1.0 1 0 0 1 1 1 1 FeoA domain WH2 PF02205.15 gi|116754799|ref|YP_843917.1| - 1.3 8.7 3.6 0.95 9.1 1.3 1.7 2 0 0 2 2 2 0 WH2 motif His_biosynth PF00977.16 gi|116754800|ref|YP_843918.1| - 8.3e-81 270.5 0.0 9.6e-81 270.4 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|116754800|ref|YP_843918.1| - 1.8e-07 30.3 0.0 0.00015 20.7 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|116754800|ref|YP_843918.1| - 2.3e-06 27.0 0.0 0.0083 15.3 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|116754800|ref|YP_843918.1| - 1.1e-05 24.7 0.0 0.00023 20.4 0.0 2.4 2 1 1 3 3 3 1 PcrB family DHO_dh PF01180.16 gi|116754800|ref|YP_843918.1| - 4.4e-05 22.5 0.0 0.01 14.8 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|116754800|ref|YP_843918.1| - 6.9e-05 22.0 0.0 0.003 16.6 0.0 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.12 gi|116754800|ref|YP_843918.1| - 0.00013 21.1 0.0 0.22 10.6 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI NanE PF04131.9 gi|116754800|ref|YP_843918.1| - 0.0054 15.7 0.1 0.048 12.6 0.0 2.3 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|116754800|ref|YP_843918.1| - 0.014 14.3 0.0 0.037 12.8 0.0 1.6 1 1 1 2 2 2 0 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|116754800|ref|YP_843918.1| - 0.016 14.1 0.0 0.23 10.3 0.0 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.15 gi|116754800|ref|YP_843918.1| - 0.045 12.2 0.0 0.074 11.5 0.0 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain G3P_antiterm PF04309.7 gi|116754800|ref|YP_843918.1| - 0.073 12.1 0.0 0.27 10.2 0.0 1.8 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator GATase PF00117.23 gi|116754801|ref|YP_843919.1| - 1.1e-29 103.3 0.0 1.2e-29 103.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|116754801|ref|YP_843919.1| - 2.2e-06 27.3 0.0 4.5e-06 26.3 0.0 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|116754801|ref|YP_843919.1| - 3.6e-06 26.7 0.0 0.082 12.5 0.0 2.1 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|116754801|ref|YP_843919.1| - 9.7e-06 25.1 0.0 0.014 14.8 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 Glu_synthase PF01645.12 gi|116754802|ref|YP_843920.1| - 2.2e-16 59.7 0.0 1.5e-11 43.8 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase SAICAR_synt PF01259.13 gi|116754803|ref|YP_843921.1| - 5.3e-34 117.4 0.0 8.9e-33 113.4 0.0 2.0 1 1 0 1 1 1 1 SAICAR synthetase NosD PF05048.8 gi|116754804|ref|YP_843922.1| - 2.1e-49 167.8 36.1 1.2e-43 149.0 19.4 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|116754804|ref|YP_843922.1| - 2.3e-18 66.4 40.0 5.1e-13 49.0 5.3 2.7 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|116754804|ref|YP_843922.1| - 0.00029 21.0 22.4 0.02 15.0 0.0 3.2 1 1 1 2 2 2 1 Pectate lyase superfamily protein DUF2414 PF10309.4 gi|116754804|ref|YP_843922.1| - 0.12 12.0 0.3 4.2 7.1 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2414) PRANC PF09372.5 gi|116754804|ref|YP_843922.1| - 0.98 9.4 8.4 2.8 7.9 4.9 2.1 2 0 0 2 2 2 0 PRANC domain AICARFT_IMPCHas PF01808.13 gi|116754805|ref|YP_843923.1| - 4.6e-74 249.3 0.0 5.8e-74 248.9 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme DUF167 PF02594.11 gi|116754806|ref|YP_843924.1| - 2.2e-16 59.5 0.0 2.9e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Toprim_4 PF13662.1 gi|116754807|ref|YP_843925.1| - 1.1e-08 35.0 0.0 1.7e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|116754807|ref|YP_843925.1| - 2.5e-07 30.6 0.0 3.2e-06 27.0 0.0 2.2 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|116754807|ref|YP_843925.1| - 0.0016 18.7 0.0 0.0025 18.1 0.0 1.5 1 1 0 1 1 1 1 Toprim-like LepA_C PF06421.7 gi|116754807|ref|YP_843925.1| - 0.048 13.5 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 GTP-binding protein LepA C-terminus MdcG PF10620.4 gi|116754807|ref|YP_843925.1| - 0.055 12.9 0.1 0.6 9.6 0.0 2.1 1 1 1 2 2 2 0 Phosphoribosyl-dephospho-CoA transferase MdcG T2SN PF01203.14 gi|116754808|ref|YP_843926.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein N Sm_multidrug_ex PF06695.6 gi|116754809|ref|YP_843927.1| - 3.2e-37 127.3 2.2 4.3e-37 126.9 1.5 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein Methyltransf_31 PF13847.1 gi|116754810|ref|YP_843928.1| - 3.2e-27 94.9 0.0 4.1e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|116754810|ref|YP_843928.1| - 1.1e-21 77.1 0.0 2.2e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116754810|ref|YP_843928.1| - 5.7e-21 75.1 0.0 8.8e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|116754810|ref|YP_843928.1| - 9.9e-21 74.0 0.0 1.5e-20 73.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116754810|ref|YP_843928.1| - 8.3e-18 64.6 0.0 1.5e-17 63.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754810|ref|YP_843928.1| - 2.3e-15 56.7 0.0 4.9e-15 55.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|116754810|ref|YP_843928.1| - 1.9e-14 53.3 0.0 2.5e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|116754810|ref|YP_843928.1| - 1.4e-08 34.7 0.0 5.2e-08 32.9 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|116754810|ref|YP_843928.1| - 2.6e-08 33.1 0.0 5.5e-08 32.0 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.9 gi|116754810|ref|YP_843928.1| - 3.1e-08 33.1 0.0 4.4e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|116754810|ref|YP_843928.1| - 1.8e-07 30.5 0.0 3.1e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|116754810|ref|YP_843928.1| - 7.6e-07 28.8 0.0 1.7e-06 27.7 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.7 gi|116754810|ref|YP_843928.1| - 1.1e-05 24.4 0.0 1.4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|116754810|ref|YP_843928.1| - 6.3e-05 22.4 0.0 8.8e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|116754810|ref|YP_843928.1| - 0.00042 19.7 0.0 0.00063 19.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|116754810|ref|YP_843928.1| - 0.00091 18.9 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|116754810|ref|YP_843928.1| - 0.0011 18.0 0.0 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|116754810|ref|YP_843928.1| - 0.0032 16.2 0.0 0.0043 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_2 PF00891.13 gi|116754810|ref|YP_843928.1| - 0.0045 16.2 0.0 0.007 15.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase PrmA PF06325.8 gi|116754810|ref|YP_843928.1| - 0.012 14.7 0.0 0.016 14.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|116754810|ref|YP_843928.1| - 0.032 13.2 0.0 0.05 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Fibrillarin PF01269.12 gi|116754810|ref|YP_843928.1| - 0.067 12.1 0.0 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_24 PF13578.1 gi|116754810|ref|YP_843928.1| - 0.08 13.7 0.0 0.2 12.5 0.0 1.7 2 0 0 2 2 1 0 Methyltransferase domain Methyltransf_8 PF05148.10 gi|116754810|ref|YP_843928.1| - 0.17 11.5 0.0 1.4 8.4 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase HATPase_c PF02518.21 gi|116754811|ref|YP_843929.1| - 1e-23 83.1 0.0 1.8e-23 82.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|116754811|ref|YP_843929.1| - 1.8e-09 37.4 0.0 5.7e-09 35.8 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|116754811|ref|YP_843929.1| - 0.00051 19.6 0.0 0.001 18.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|116754811|ref|YP_843929.1| - 0.00059 19.4 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3754 PF12576.3 gi|116754811|ref|YP_843929.1| - 0.12 11.9 6.4 1.7 8.2 0.9 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3754) MerC PF03203.9 gi|116754811|ref|YP_843929.1| - 0.38 11.1 5.1 10 6.5 1.3 2.7 1 1 1 2 2 2 0 MerC mercury resistance protein Zn-ribbon_8 PF09723.5 gi|116754812|ref|YP_843930.1| - 6.1e-05 22.8 5.2 0.0013 18.5 3.6 2.1 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|116754812|ref|YP_843930.1| - 0.00092 18.8 0.2 0.001 18.7 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|116754812|ref|YP_843930.1| - 0.0031 17.2 4.5 0.45 10.3 0.4 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|116754812|ref|YP_843930.1| - 0.0044 16.6 2.8 0.2 11.3 0.2 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|116754812|ref|YP_843930.1| - 0.0091 15.3 1.5 1.2 8.5 0.0 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding DUF35_N PF12172.3 gi|116754812|ref|YP_843930.1| - 0.011 15.6 8.0 0.19 11.6 0.4 2.4 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2296 PF10058.4 gi|116754812|ref|YP_843930.1| - 0.022 14.5 1.5 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C3HC4_3 PF13920.1 gi|116754812|ref|YP_843930.1| - 0.029 14.0 0.3 0.039 13.6 0.2 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PhnA_Zn_Ribbon PF08274.7 gi|116754812|ref|YP_843930.1| - 0.043 13.6 0.6 3.2 7.6 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon RRN7 PF11781.3 gi|116754812|ref|YP_843930.1| - 0.048 13.1 3.4 0.17 11.4 0.2 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DZR PF12773.2 gi|116754812|ref|YP_843930.1| - 0.057 13.2 1.8 0.1 12.4 1.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|116754812|ref|YP_843930.1| - 0.066 12.4 2.6 2.5 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|116754812|ref|YP_843930.1| - 0.074 12.5 4.5 0.11 12.0 0.3 2.2 2 0 0 2 2 2 0 InsA N-terminal domain NRDD PF13597.1 gi|116754812|ref|YP_843930.1| - 0.093 10.7 0.2 0.098 10.7 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DNA_RNApol_7kD PF03604.8 gi|116754812|ref|YP_843930.1| - 0.24 10.9 3.1 0.64 9.5 2.2 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-IS66 PF13005.2 gi|116754812|ref|YP_843930.1| - 0.25 11.3 4.1 7.2 6.6 2.8 2.2 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Ogr_Delta PF04606.7 gi|116754812|ref|YP_843930.1| - 0.26 10.9 1.4 11 5.7 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_3 PF14369.1 gi|116754812|ref|YP_843930.1| - 0.37 10.8 4.5 2 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-finger zf-trcl PF13451.1 gi|116754812|ref|YP_843930.1| - 0.54 9.9 2.5 9.4 5.9 0.1 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain zinc_ribbon_2 PF13240.1 gi|116754812|ref|YP_843930.1| - 1.3 8.6 4.6 3.8 7.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|116754812|ref|YP_843930.1| - 1.4 8.8 6.5 4.7 7.1 0.6 2.7 1 1 1 2 2 2 0 Rubredoxin UPF0547 PF10571.4 gi|116754812|ref|YP_843930.1| - 2.2 8.0 7.9 0.63 9.7 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|116754812|ref|YP_843930.1| - 2.4 7.8 7.0 6.4 6.4 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|116754812|ref|YP_843930.1| - 4.6 7.0 7.5 10 5.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF167 PF02594.11 gi|116754813|ref|YP_843931.1| - 2.2e-16 59.5 0.0 2.9e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Toprim_4 PF13662.1 gi|116754814|ref|YP_843932.1| - 1.1e-08 35.0 0.0 1.7e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|116754814|ref|YP_843932.1| - 2.5e-07 30.6 0.0 3.2e-06 27.0 0.0 2.2 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|116754814|ref|YP_843932.1| - 0.0016 18.7 0.0 0.0025 18.1 0.0 1.5 1 1 0 1 1 1 1 Toprim-like LepA_C PF06421.7 gi|116754814|ref|YP_843932.1| - 0.048 13.5 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 GTP-binding protein LepA C-terminus MdcG PF10620.4 gi|116754814|ref|YP_843932.1| - 0.055 12.9 0.1 0.6 9.6 0.0 2.1 1 1 1 2 2 2 0 Phosphoribosyl-dephospho-CoA transferase MdcG T2SN PF01203.14 gi|116754815|ref|YP_843933.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein N Sm_multidrug_ex PF06695.6 gi|116754816|ref|YP_843934.1| - 9.7e-39 132.2 2.1 1.3e-38 131.8 1.5 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein Methyltransf_31 PF13847.1 gi|116754817|ref|YP_843935.1| - 3.2e-27 94.9 0.0 4.1e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|116754817|ref|YP_843935.1| - 1.1e-21 77.1 0.0 2.2e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116754817|ref|YP_843935.1| - 5.7e-21 75.1 0.0 8.8e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|116754817|ref|YP_843935.1| - 9.9e-21 74.0 0.0 1.5e-20 73.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116754817|ref|YP_843935.1| - 8.3e-18 64.6 0.0 1.5e-17 63.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754817|ref|YP_843935.1| - 2.3e-15 56.7 0.0 4.9e-15 55.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|116754817|ref|YP_843935.1| - 1.9e-14 53.3 0.0 2.5e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|116754817|ref|YP_843935.1| - 1.4e-08 34.7 0.0 5.2e-08 32.9 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|116754817|ref|YP_843935.1| - 2.6e-08 33.1 0.0 5.5e-08 32.0 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.9 gi|116754817|ref|YP_843935.1| - 3.1e-08 33.1 0.0 4.4e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|116754817|ref|YP_843935.1| - 1.8e-07 30.5 0.0 3.1e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|116754817|ref|YP_843935.1| - 7.6e-07 28.8 0.0 1.7e-06 27.7 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.7 gi|116754817|ref|YP_843935.1| - 1.1e-05 24.4 0.0 1.4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|116754817|ref|YP_843935.1| - 6.3e-05 22.4 0.0 8.8e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|116754817|ref|YP_843935.1| - 0.00042 19.7 0.0 0.00063 19.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|116754817|ref|YP_843935.1| - 0.00091 18.9 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|116754817|ref|YP_843935.1| - 0.0011 18.0 0.0 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|116754817|ref|YP_843935.1| - 0.0032 16.2 0.0 0.0043 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_2 PF00891.13 gi|116754817|ref|YP_843935.1| - 0.0045 16.2 0.0 0.007 15.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase PrmA PF06325.8 gi|116754817|ref|YP_843935.1| - 0.012 14.7 0.0 0.016 14.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|116754817|ref|YP_843935.1| - 0.032 13.2 0.0 0.05 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Fibrillarin PF01269.12 gi|116754817|ref|YP_843935.1| - 0.067 12.1 0.0 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_24 PF13578.1 gi|116754817|ref|YP_843935.1| - 0.08 13.7 0.0 0.2 12.5 0.0 1.7 2 0 0 2 2 1 0 Methyltransferase domain Methyltransf_8 PF05148.10 gi|116754817|ref|YP_843935.1| - 0.17 11.5 0.0 1.4 8.4 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase HATPase_c PF02518.21 gi|116754818|ref|YP_843936.1| - 1e-23 83.1 0.0 1.8e-23 82.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|116754818|ref|YP_843936.1| - 1.8e-09 37.4 0.0 5.7e-09 35.8 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|116754818|ref|YP_843936.1| - 0.00051 19.6 0.0 0.001 18.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|116754818|ref|YP_843936.1| - 0.00059 19.4 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3754 PF12576.3 gi|116754818|ref|YP_843936.1| - 0.12 11.9 6.4 1.7 8.2 0.9 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3754) MerC PF03203.9 gi|116754818|ref|YP_843936.1| - 0.38 11.1 5.1 10 6.5 1.3 2.7 1 1 1 2 2 2 0 MerC mercury resistance protein Zn-ribbon_8 PF09723.5 gi|116754819|ref|YP_843937.1| - 6.1e-05 22.8 5.2 0.0013 18.5 3.6 2.1 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|116754819|ref|YP_843937.1| - 0.00092 18.8 0.2 0.001 18.7 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|116754819|ref|YP_843937.1| - 0.0031 17.2 4.5 0.45 10.3 0.4 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|116754819|ref|YP_843937.1| - 0.0044 16.6 2.8 0.2 11.3 0.2 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|116754819|ref|YP_843937.1| - 0.0091 15.3 1.5 1.2 8.5 0.0 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding DUF35_N PF12172.3 gi|116754819|ref|YP_843937.1| - 0.011 15.6 8.0 0.19 11.6 0.4 2.4 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2296 PF10058.4 gi|116754819|ref|YP_843937.1| - 0.022 14.5 1.5 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C3HC4_3 PF13920.1 gi|116754819|ref|YP_843937.1| - 0.029 14.0 0.3 0.039 13.6 0.2 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PhnA_Zn_Ribbon PF08274.7 gi|116754819|ref|YP_843937.1| - 0.043 13.6 0.6 3.2 7.6 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon RRN7 PF11781.3 gi|116754819|ref|YP_843937.1| - 0.048 13.1 3.4 0.17 11.4 0.2 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DZR PF12773.2 gi|116754819|ref|YP_843937.1| - 0.057 13.2 1.8 0.1 12.4 1.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|116754819|ref|YP_843937.1| - 0.066 12.4 2.6 2.5 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|116754819|ref|YP_843937.1| - 0.074 12.5 4.5 0.11 12.0 0.3 2.2 2 0 0 2 2 2 0 InsA N-terminal domain NRDD PF13597.1 gi|116754819|ref|YP_843937.1| - 0.093 10.7 0.2 0.098 10.7 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DNA_RNApol_7kD PF03604.8 gi|116754819|ref|YP_843937.1| - 0.24 10.9 3.1 0.64 9.5 2.2 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-IS66 PF13005.2 gi|116754819|ref|YP_843937.1| - 0.25 11.3 4.1 7.2 6.6 2.8 2.2 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Ogr_Delta PF04606.7 gi|116754819|ref|YP_843937.1| - 0.26 10.9 1.4 11 5.7 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_3 PF14369.1 gi|116754819|ref|YP_843937.1| - 0.37 10.8 4.5 2 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-finger zf-trcl PF13451.1 gi|116754819|ref|YP_843937.1| - 0.54 9.9 2.5 9.4 5.9 0.1 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain zinc_ribbon_2 PF13240.1 gi|116754819|ref|YP_843937.1| - 1.3 8.6 4.6 3.8 7.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|116754819|ref|YP_843937.1| - 1.4 8.8 6.5 4.7 7.1 0.6 2.7 1 1 1 2 2 2 0 Rubredoxin UPF0547 PF10571.4 gi|116754819|ref|YP_843937.1| - 2.2 8.0 7.9 0.63 9.7 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|116754819|ref|YP_843937.1| - 2.4 7.8 7.0 6.4 6.4 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|116754819|ref|YP_843937.1| - 4.6 7.0 7.5 10 5.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF167 PF02594.11 gi|116754820|ref|YP_843938.1| - 2.2e-16 59.5 0.0 2.9e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Toprim_4 PF13662.1 gi|116754821|ref|YP_843939.1| - 1.1e-08 35.0 0.0 1.7e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|116754821|ref|YP_843939.1| - 2.5e-07 30.6 0.0 3.2e-06 27.0 0.0 2.2 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|116754821|ref|YP_843939.1| - 0.0016 18.7 0.0 0.0025 18.1 0.0 1.5 1 1 0 1 1 1 1 Toprim-like LepA_C PF06421.7 gi|116754821|ref|YP_843939.1| - 0.048 13.5 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 GTP-binding protein LepA C-terminus MdcG PF10620.4 gi|116754821|ref|YP_843939.1| - 0.055 12.9 0.1 0.6 9.6 0.0 2.1 1 1 1 2 2 2 0 Phosphoribosyl-dephospho-CoA transferase MdcG T2SN PF01203.14 gi|116754822|ref|YP_843940.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein N Sm_multidrug_ex PF06695.6 gi|116754823|ref|YP_843941.1| - 3.2e-37 127.3 2.2 4.3e-37 126.9 1.5 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein Methyltransf_31 PF13847.1 gi|116754824|ref|YP_843942.1| - 3.2e-27 94.9 0.0 4.1e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|116754824|ref|YP_843942.1| - 1.1e-21 77.1 0.0 2.2e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116754824|ref|YP_843942.1| - 5.7e-21 75.1 0.0 8.8e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|116754824|ref|YP_843942.1| - 9.9e-21 74.0 0.0 1.5e-20 73.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116754824|ref|YP_843942.1| - 8.3e-18 64.6 0.0 1.5e-17 63.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754824|ref|YP_843942.1| - 2.3e-15 56.7 0.0 4.9e-15 55.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|116754824|ref|YP_843942.1| - 1.9e-14 53.3 0.0 2.5e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|116754824|ref|YP_843942.1| - 1.4e-08 34.7 0.0 5.2e-08 32.9 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|116754824|ref|YP_843942.1| - 2.6e-08 33.1 0.0 5.5e-08 32.0 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.9 gi|116754824|ref|YP_843942.1| - 3.1e-08 33.1 0.0 4.4e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|116754824|ref|YP_843942.1| - 1.8e-07 30.5 0.0 3.1e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|116754824|ref|YP_843942.1| - 7.6e-07 28.8 0.0 1.7e-06 27.7 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.7 gi|116754824|ref|YP_843942.1| - 1.1e-05 24.4 0.0 1.4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|116754824|ref|YP_843942.1| - 6.3e-05 22.4 0.0 8.8e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|116754824|ref|YP_843942.1| - 0.00042 19.7 0.0 0.00063 19.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|116754824|ref|YP_843942.1| - 0.00091 18.9 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|116754824|ref|YP_843942.1| - 0.0011 18.0 0.0 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|116754824|ref|YP_843942.1| - 0.0032 16.2 0.0 0.0043 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_2 PF00891.13 gi|116754824|ref|YP_843942.1| - 0.0045 16.2 0.0 0.007 15.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase PrmA PF06325.8 gi|116754824|ref|YP_843942.1| - 0.012 14.7 0.0 0.016 14.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|116754824|ref|YP_843942.1| - 0.032 13.2 0.0 0.05 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Fibrillarin PF01269.12 gi|116754824|ref|YP_843942.1| - 0.067 12.1 0.0 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_24 PF13578.1 gi|116754824|ref|YP_843942.1| - 0.08 13.7 0.0 0.2 12.5 0.0 1.7 2 0 0 2 2 1 0 Methyltransferase domain Methyltransf_8 PF05148.10 gi|116754824|ref|YP_843942.1| - 0.17 11.5 0.0 1.4 8.4 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase HATPase_c PF02518.21 gi|116754825|ref|YP_843943.1| - 1e-23 83.1 0.0 1.8e-23 82.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|116754825|ref|YP_843943.1| - 1.8e-09 37.4 0.0 5.7e-09 35.8 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|116754825|ref|YP_843943.1| - 0.00051 19.6 0.0 0.001 18.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|116754825|ref|YP_843943.1| - 0.00059 19.4 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3754 PF12576.3 gi|116754825|ref|YP_843943.1| - 0.12 11.9 6.4 1.7 8.2 0.9 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3754) MerC PF03203.9 gi|116754825|ref|YP_843943.1| - 0.38 11.1 5.1 10 6.5 1.3 2.7 1 1 1 2 2 2 0 MerC mercury resistance protein Zn-ribbon_8 PF09723.5 gi|116754826|ref|YP_843944.1| - 6.1e-05 22.8 5.2 0.0013 18.5 3.6 2.1 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|116754826|ref|YP_843944.1| - 0.00092 18.8 0.2 0.001 18.7 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|116754826|ref|YP_843944.1| - 0.0031 17.2 4.5 0.45 10.3 0.4 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|116754826|ref|YP_843944.1| - 0.0044 16.6 2.8 0.2 11.3 0.2 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|116754826|ref|YP_843944.1| - 0.0091 15.3 1.5 1.2 8.5 0.0 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding DUF35_N PF12172.3 gi|116754826|ref|YP_843944.1| - 0.011 15.6 8.0 0.19 11.6 0.4 2.4 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2296 PF10058.4 gi|116754826|ref|YP_843944.1| - 0.022 14.5 1.5 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C3HC4_3 PF13920.1 gi|116754826|ref|YP_843944.1| - 0.029 14.0 0.3 0.039 13.6 0.2 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PhnA_Zn_Ribbon PF08274.7 gi|116754826|ref|YP_843944.1| - 0.043 13.6 0.6 3.2 7.6 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon RRN7 PF11781.3 gi|116754826|ref|YP_843944.1| - 0.048 13.1 3.4 0.17 11.4 0.2 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DZR PF12773.2 gi|116754826|ref|YP_843944.1| - 0.057 13.2 1.8 0.1 12.4 1.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|116754826|ref|YP_843944.1| - 0.066 12.4 2.6 2.5 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|116754826|ref|YP_843944.1| - 0.074 12.5 4.5 0.11 12.0 0.3 2.2 2 0 0 2 2 2 0 InsA N-terminal domain NRDD PF13597.1 gi|116754826|ref|YP_843944.1| - 0.093 10.7 0.2 0.098 10.7 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DNA_RNApol_7kD PF03604.8 gi|116754826|ref|YP_843944.1| - 0.24 10.9 3.1 0.64 9.5 2.2 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-IS66 PF13005.2 gi|116754826|ref|YP_843944.1| - 0.25 11.3 4.1 7.2 6.6 2.8 2.2 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Ogr_Delta PF04606.7 gi|116754826|ref|YP_843944.1| - 0.26 10.9 1.4 11 5.7 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_3 PF14369.1 gi|116754826|ref|YP_843944.1| - 0.37 10.8 4.5 2 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-finger zf-trcl PF13451.1 gi|116754826|ref|YP_843944.1| - 0.54 9.9 2.5 9.4 5.9 0.1 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain zinc_ribbon_2 PF13240.1 gi|116754826|ref|YP_843944.1| - 1.3 8.6 4.6 3.8 7.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|116754826|ref|YP_843944.1| - 1.4 8.8 6.5 4.7 7.1 0.6 2.7 1 1 1 2 2 2 0 Rubredoxin UPF0547 PF10571.4 gi|116754826|ref|YP_843944.1| - 2.2 8.0 7.9 0.63 9.7 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|116754826|ref|YP_843944.1| - 2.4 7.8 7.0 6.4 6.4 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|116754826|ref|YP_843944.1| - 4.6 7.0 7.5 10 5.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HMGL-like PF00682.14 gi|116754827|ref|YP_843945.1| - 2.4e-77 259.7 0.2 3.3e-77 259.3 0.2 1.1 1 0 0 1 1 1 1 HMGL-like DUF561 PF04481.7 gi|116754827|ref|YP_843945.1| - 1.2e-05 24.3 0.0 0.12 11.3 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF561) SpoVIF PF14069.1 gi|116754827|ref|YP_843945.1| - 0.017 14.8 0.0 3.4 7.4 0.0 2.8 2 0 0 2 2 2 0 Stage VI sporulation protein F FbpA PF05833.6 gi|116754828|ref|YP_843946.1| - 7.6e-92 308.2 0.0 9.8e-92 307.8 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|116754828|ref|YP_843946.1| - 2.3e-25 88.2 0.0 4e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) DUF2917 PF11142.3 gi|116754828|ref|YP_843946.1| - 0.0037 16.4 0.0 0.013 14.7 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF2917) H2TH PF06831.9 gi|116754828|ref|YP_843946.1| - 0.0061 16.2 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Orn_Arg_deC_N PF02784.11 gi|116754830|ref|YP_843948.1| - 9.6e-48 162.5 0.0 1.6e-47 161.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|116754830|ref|YP_843948.1| - 4e-26 91.0 0.0 8e-26 90.0 0.0 1.5 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SDH_sah PF01972.11 gi|116754831|ref|YP_843949.1| - 8.2e-110 366.0 2.3 9.6e-110 365.8 1.6 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|116754831|ref|YP_843949.1| - 1.9e-06 27.6 0.2 4.4e-06 26.4 0.1 1.6 1 1 0 1 1 1 1 Clp protease ECH PF00378.15 gi|116754831|ref|YP_843949.1| - 0.012 14.7 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase family HCaRG PF07258.9 gi|116754831|ref|YP_843949.1| - 0.042 13.3 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 HCaRG protein Peptidase_S49 PF01343.13 gi|116754831|ref|YP_843949.1| - 0.048 13.4 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S49 Radical_SAM_N PF08497.5 gi|116754832|ref|YP_843950.1| - 9.4e-134 445.0 0.0 1.3e-133 444.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal Radical_SAM PF04055.16 gi|116754832|ref|YP_843950.1| - 5.2e-20 72.2 1.5 1.9e-18 67.2 0.9 2.9 3 0 0 3 3 3 1 Radical SAM superfamily DUF3362 PF11842.3 gi|116754832|ref|YP_843950.1| - 1.2e-13 51.1 0.0 2.2e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) B12-binding PF02310.14 gi|116754832|ref|YP_843950.1| - 0.022 14.5 0.1 1.8 8.4 0.0 2.9 2 1 0 2 2 2 0 B12 binding domain Glycos_transf_3 PF00591.16 gi|116754833|ref|YP_843951.1| - 4.3e-98 327.7 1.0 5.6e-98 327.3 0.7 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|116754833|ref|YP_843951.1| - 2.8e-18 65.2 3.0 6.3e-18 64.1 2.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.17 gi|116754834|ref|YP_843952.1| - 2.8e-35 121.6 0.0 3.1e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMO PF03060.10 gi|116754834|ref|YP_843952.1| - 0.046 12.8 0.4 0.081 12.0 0.3 1.6 1 1 1 2 2 2 0 Nitronate monooxygenase Chorismate_bind PF00425.13 gi|116754835|ref|YP_843953.1| - 5.9e-96 320.7 0.0 1e-93 313.3 0.0 3.0 2 1 1 3 3 3 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|116754835|ref|YP_843953.1| - 2.7e-33 114.9 0.1 1.7e-31 109.0 0.0 2.8 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region IGPS PF00218.16 gi|116754836|ref|YP_843954.1| - 4.8e-59 199.4 0.0 6e-59 199.1 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|116754836|ref|YP_843954.1| - 0.0024 16.7 0.3 0.0031 16.3 0.2 1.2 1 0 0 1 1 1 1 FMN-dependent dehydrogenase PcrB PF01884.12 gi|116754836|ref|YP_843954.1| - 0.0027 17.0 0.0 0.0047 16.2 0.0 1.3 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|116754836|ref|YP_843954.1| - 0.0058 15.9 0.0 0.013 14.8 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|116754836|ref|YP_843954.1| - 0.0075 15.1 0.0 0.011 14.5 0.0 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) TgMIC1 PF11476.3 gi|116754836|ref|YP_843954.1| - 0.024 14.1 0.0 0.038 13.5 0.0 1.3 1 0 0 1 1 1 0 Toxoplasma gondii micronemal protein 1 TgMIC1 NanE PF04131.9 gi|116754836|ref|YP_843954.1| - 0.031 13.2 0.1 0.074 12.0 0.0 1.6 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Pyr_redox PF00070.22 gi|116754837|ref|YP_843955.1| - 2.2e-22 79.2 0.5 2.5e-16 59.8 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|116754837|ref|YP_843955.1| - 6.8e-18 65.2 0.0 2.7e-17 63.3 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|116754837|ref|YP_843955.1| - 3.7e-10 40.1 0.1 6.3e-05 23.1 0.0 3.5 1 1 2 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|116754837|ref|YP_843955.1| - 2.9e-08 33.0 0.7 0.041 12.7 0.0 3.8 4 0 0 4 4 4 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|116754837|ref|YP_843955.1| - 0.00021 20.3 0.4 0.58 9.0 0.0 3.1 2 1 1 3 3 3 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|116754837|ref|YP_843955.1| - 0.00023 21.1 0.1 0.26 11.3 0.0 2.9 2 1 1 3 3 3 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|116754837|ref|YP_843955.1| - 0.00029 19.8 0.1 0.016 14.1 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.13 gi|116754837|ref|YP_843955.1| - 0.00082 19.0 0.0 0.089 12.4 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|116754837|ref|YP_843955.1| - 0.0027 17.7 0.4 0.77 9.7 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain XdhC_C PF13478.1 gi|116754837|ref|YP_843955.1| - 0.0069 16.6 0.0 0.027 14.8 0.0 1.9 1 1 1 2 2 2 1 XdhC Rossmann domain Semialdhyde_dh PF01118.19 gi|116754837|ref|YP_843955.1| - 0.018 15.3 1.1 3.9 7.8 0.0 2.6 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain DUF1188 PF06690.6 gi|116754837|ref|YP_843955.1| - 0.02 14.0 0.0 0.054 12.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) NAD_binding_9 PF13454.1 gi|116754837|ref|YP_843955.1| - 0.022 14.5 2.9 0.76 9.5 0.0 3.5 3 1 1 4 4 4 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|116754837|ref|YP_843955.1| - 0.049 12.2 1.0 8.1 4.9 0.0 2.9 3 0 0 3 3 3 0 Tryptophan halogenase NAD_binding_7 PF13241.1 gi|116754837|ref|YP_843955.1| - 0.088 13.0 0.0 0.48 10.7 0.0 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|116754837|ref|YP_843955.1| - 0.09 12.8 0.0 4.5 7.3 0.0 2.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase HCBP_related PF06594.6 gi|116754837|ref|YP_843955.1| - 0.11 12.1 0.1 0.36 10.4 0.0 1.9 2 0 0 2 2 1 0 Haemolysin-type calcium binding protein related domain GIDA PF01134.17 gi|116754837|ref|YP_843955.1| - 0.11 11.3 1.4 23 3.6 0.2 3.2 3 1 0 3 3 3 0 Glucose inhibited division protein A CodY PF06018.9 gi|116754837|ref|YP_843955.1| - 0.13 11.5 0.0 0.29 10.3 0.0 1.6 1 0 0 1 1 1 0 CodY GAF-like domain FAD_binding_3 PF01494.14 gi|116754837|ref|YP_843955.1| - 0.18 10.8 1.0 5.4 5.9 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain Pectate_lyase22 PF14583.1 gi|116754838|ref|YP_843956.1| - 0.034 12.6 0.2 0.46 8.8 0.0 2.0 2 0 0 2 2 2 0 Oligogalacturonate lyase FKBP_C PF00254.23 gi|116754840|ref|YP_843958.1| - 6.3e-24 83.8 0.0 7.9e-24 83.4 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Antitoxin-MazE PF04014.13 gi|116754840|ref|YP_843958.1| - 0.036 13.8 0.6 0.036 13.8 0.4 2.9 3 1 0 3 3 3 0 Antidote-toxin recognition MazE STT3 PF02516.9 gi|116754841|ref|YP_843959.1| - 4.6e-38 131.4 35.8 7.8e-38 130.6 24.8 1.4 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|116754841|ref|YP_843959.1| - 4.2e-11 42.9 12.8 4.2e-11 42.9 8.9 3.6 2 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Arteri_GP4 PF02497.10 gi|116754841|ref|YP_843959.1| - 0.11 12.3 0.9 0.26 11.1 0.7 1.6 1 0 0 1 1 1 0 Arterivirus glycoprotein Glycos_transf_1 PF00534.15 gi|116754842|ref|YP_843960.1| - 5.1e-32 110.6 0.0 8.2e-32 109.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|116754842|ref|YP_843960.1| - 5.2e-25 88.4 0.0 2.2e-24 86.4 0.0 2.0 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|116754842|ref|YP_843960.1| - 2.3e-19 69.7 1.0 6.2e-19 68.3 0.7 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|116754842|ref|YP_843960.1| - 1.3e-18 67.3 1.7 5.4e-09 35.9 0.2 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|116754842|ref|YP_843960.1| - 5.3e-16 58.9 0.0 1.1e-15 58.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|116754842|ref|YP_843960.1| - 4.4e-08 33.0 0.1 9.1e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|116754842|ref|YP_843960.1| - 9e-08 32.2 0.0 1.6e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 NAD_binding_10 PF13460.1 gi|116754842|ref|YP_843960.1| - 0.051 13.5 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding GalP_UDP_transf PF01087.17 gi|116754843|ref|YP_843961.1| - 6.8e-12 45.8 0.0 4e-11 43.3 0.0 1.9 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|116754843|ref|YP_843961.1| - 0.00053 19.5 0.0 0.00074 19.0 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain Lar_restr_allev PF14354.1 gi|116754843|ref|YP_843961.1| - 0.011 16.0 0.5 0.15 12.4 0.1 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar Glycos_transf_1 PF00534.15 gi|116754844|ref|YP_843962.1| - 2.8e-30 105.0 0.0 4.3e-30 104.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|116754844|ref|YP_843962.1| - 3e-24 85.9 0.6 1.8e-23 83.4 0.0 2.5 3 1 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|116754844|ref|YP_843962.1| - 8.2e-16 58.2 0.0 2.8e-14 53.2 0.0 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|116754844|ref|YP_843962.1| - 1.2e-14 54.3 0.0 3.6e-14 52.8 0.0 1.8 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|116754844|ref|YP_843962.1| - 7.6e-12 45.5 0.0 1.3e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|116754844|ref|YP_843962.1| - 5.8e-08 32.9 0.0 1e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.8 gi|116754845|ref|YP_843963.1| - 1.5e-20 73.0 0.0 1.5e-09 36.7 0.0 2.8 2 1 0 2 2 2 2 Glycogen synthase Glycos_transf_1 PF00534.15 gi|116754845|ref|YP_843963.1| - 0.0001 21.7 0.0 0.0007 19.0 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|116754845|ref|YP_843963.1| - 0.0088 15.5 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 Starch synthase catalytic domain KaiC PF06745.8 gi|116754846|ref|YP_843964.1| - 5.6e-46 156.4 0.1 6.8e-46 156.2 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|116754846|ref|YP_843964.1| - 6.1e-06 25.7 0.1 1.7e-05 24.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|116754846|ref|YP_843964.1| - 0.0028 17.0 0.0 0.0049 16.2 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF2075 PF09848.4 gi|116754846|ref|YP_843964.1| - 0.0087 15.0 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.2 gi|116754846|ref|YP_843964.1| - 0.012 15.0 0.0 0.015 14.7 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|116754846|ref|YP_843964.1| - 0.022 14.4 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|116754846|ref|YP_843964.1| - 0.025 14.6 0.6 0.33 11.0 0.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|116754846|ref|YP_843964.1| - 0.069 13.0 0.1 0.15 11.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|116754846|ref|YP_843964.1| - 0.069 13.3 1.7 1.2 9.3 1.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad51 PF08423.6 gi|116754846|ref|YP_843964.1| - 0.14 11.0 0.2 0.26 10.1 0.2 1.4 1 0 0 1 1 1 0 Rad51 PhoH PF02562.11 gi|116754846|ref|YP_843964.1| - 0.19 10.9 1.0 1.1 8.3 0.1 2.1 2 0 0 2 2 2 0 PhoH-like protein DUF3715 PF12509.3 gi|116754847|ref|YP_843965.1| - 0.053 13.3 0.3 12 5.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3715) DEAD PF00270.24 gi|116754849|ref|YP_843967.1| - 3.3e-12 46.2 0.0 1.2e-11 44.4 0.0 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|116754849|ref|YP_843967.1| - 0.00018 21.4 0.0 0.00036 20.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|116754849|ref|YP_843967.1| - 0.00037 20.3 0.0 0.00084 19.1 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Cas_Cas4 PF01930.12 gi|116754850|ref|YP_843968.1| - 2.3e-24 86.1 0.5 2.6e-24 85.9 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|116754850|ref|YP_843968.1| - 1.3e-07 31.2 2.8 1.3e-05 24.7 0.0 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|116754850|ref|YP_843968.1| - 0.0013 18.0 0.6 0.0044 16.2 0.1 1.8 1 1 1 2 2 2 1 Archaeal protein of unknown function (DUF911) Dna2 PF08696.6 gi|116754850|ref|YP_843968.1| - 0.031 13.6 0.0 2 7.6 0.0 2.3 2 0 0 2 2 2 0 DNA replication factor Dna2 Cas_Cas1 PF01867.11 gi|116754851|ref|YP_843969.1| - 3.5e-79 265.8 0.0 4.7e-79 265.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|116754852|ref|YP_843970.1| - 2e-22 79.0 0.4 2.4e-22 78.8 0.3 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 MarR PF01047.17 gi|116754853|ref|YP_843971.1| - 8.2e-06 25.4 0.8 1.3e-05 24.8 0.0 1.7 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|116754853|ref|YP_843971.1| - 2.3e-05 24.2 0.1 4e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|116754853|ref|YP_843971.1| - 2.9e-05 23.6 0.4 6.6e-05 22.5 0.0 1.8 2 0 0 2 2 1 1 MarR family HTH_IclR PF09339.5 gi|116754853|ref|YP_843971.1| - 5.1e-05 22.7 0.0 9.3e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_1 PF00126.22 gi|116754853|ref|YP_843971.1| - 0.00021 20.9 0.0 0.00035 20.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.1 gi|116754853|ref|YP_843971.1| - 0.00028 21.1 0.3 0.00064 19.9 0.2 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|116754853|ref|YP_843971.1| - 0.00056 19.5 0.1 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|116754853|ref|YP_843971.1| - 0.00094 18.7 0.2 0.0022 17.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|116754853|ref|YP_843971.1| - 0.001 18.8 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|116754853|ref|YP_843971.1| - 0.0021 18.1 0.1 0.0058 16.7 0.1 1.7 2 0 0 2 2 1 1 Transcriptional regulator TrmB PF01978.14 gi|116754853|ref|YP_843971.1| - 0.0022 17.6 0.2 0.0044 16.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|116754853|ref|YP_843971.1| - 0.012 15.5 0.4 0.095 12.7 0.2 2.3 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_6 PF01418.12 gi|116754853|ref|YP_843971.1| - 0.013 15.2 0.1 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_24 PF13412.1 gi|116754853|ref|YP_843971.1| - 0.016 14.5 0.4 0.041 13.2 0.3 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF1670 PF07900.6 gi|116754853|ref|YP_843971.1| - 0.017 14.3 0.2 0.026 13.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) Mga PF05043.8 gi|116754853|ref|YP_843971.1| - 0.021 15.1 0.1 0.05 13.8 0.0 1.8 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_23 PF13384.1 gi|116754853|ref|YP_843971.1| - 0.027 14.1 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|116754853|ref|YP_843971.1| - 0.028 13.5 0.0 0.049 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.11 gi|116754853|ref|YP_843971.1| - 0.033 13.5 0.1 0.081 12.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma54_DBD PF04552.8 gi|116754853|ref|YP_843971.1| - 0.033 13.7 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_28 PF13518.1 gi|116754853|ref|YP_843971.1| - 0.038 14.0 0.0 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|116754853|ref|YP_843971.1| - 0.056 13.3 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_38 PF13936.1 gi|116754853|ref|YP_843971.1| - 0.056 13.0 0.1 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.1 gi|116754853|ref|YP_843971.1| - 0.075 12.5 0.5 0.24 10.9 0.2 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_29 PF13551.1 gi|116754853|ref|YP_843971.1| - 0.093 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix DUF2276 PF10040.4 gi|116754854|ref|YP_843972.1| - 1.9e-26 92.6 0.0 2.9e-26 92.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) DUF4064 PF13273.1 gi|116754855|ref|YP_843973.1| - 5.7e-11 42.4 16.5 5.7e-11 42.4 11.4 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF4064) DUF1469 PF07332.6 gi|116754855|ref|YP_843973.1| - 0.0022 17.6 14.4 0.0044 16.7 4.6 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1469) DUF4131 PF13567.1 gi|116754855|ref|YP_843973.1| - 0.1 12.0 7.3 0.23 10.8 5.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) CD20 PF04103.10 gi|116754855|ref|YP_843973.1| - 0.27 11.1 12.6 0.32 10.9 8.7 1.1 1 0 0 1 1 1 0 CD20-like family DUF3814 PF12769.2 gi|116754855|ref|YP_843973.1| - 2.5 8.2 12.0 0.59 10.3 4.8 2.3 2 2 0 2 2 2 0 Domain of unknown function (DUF3814) P12 PF12669.2 gi|116754855|ref|YP_843973.1| - 4.3 7.5 0.0 4.3 7.5 0.0 2.9 3 0 0 3 3 3 0 Virus attachment protein p12 family SdpI PF13630.1 gi|116754855|ref|YP_843973.1| - 5.3 6.8 22.6 1.7 8.3 1.7 3.2 1 1 2 3 3 3 0 SdpI/YhfL protein family DUF308 PF03729.8 gi|116754855|ref|YP_843973.1| - 7.2 6.6 33.7 3.7 7.6 13.4 3.1 1 1 2 3 3 3 0 Short repeat of unknown function (DUF308) SRP54 PF00448.17 gi|116754856|ref|YP_843974.1| - 1.5e-73 246.4 0.3 2.1e-73 245.9 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|116754856|ref|YP_843974.1| - 4e-13 49.2 0.8 4e-13 49.2 0.6 2.5 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|116754856|ref|YP_843974.1| - 1.2e-06 28.2 0.2 3e-06 26.9 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|116754856|ref|YP_843974.1| - 4.6e-06 26.1 3.4 2.8e-05 23.5 1.7 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.1 gi|116754856|ref|YP_843974.1| - 8.7e-06 25.4 0.6 2.5e-05 23.9 0.4 1.7 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|116754856|ref|YP_843974.1| - 2.5e-05 23.7 0.1 0.0012 18.2 0.0 2.6 2 1 1 3 3 3 1 Thymidylate kinase AAA_22 PF13401.1 gi|116754856|ref|YP_843974.1| - 0.00021 21.4 0.0 0.0006 19.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|116754856|ref|YP_843974.1| - 0.00023 20.8 0.0 0.00046 19.8 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA PF00004.24 gi|116754856|ref|YP_843974.1| - 0.00034 20.8 0.2 0.0012 19.1 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|116754856|ref|YP_843974.1| - 0.00038 19.6 0.1 0.00064 18.8 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|116754856|ref|YP_843974.1| - 0.00054 19.6 0.5 0.0017 18.1 0.3 1.9 1 1 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|116754856|ref|YP_843974.1| - 0.00087 19.1 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|116754856|ref|YP_843974.1| - 0.0028 17.6 0.3 0.0055 16.6 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|116754856|ref|YP_843974.1| - 0.0039 17.2 0.7 0.0096 15.9 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain T2SE PF00437.15 gi|116754856|ref|YP_843974.1| - 0.0086 15.0 0.2 0.51 9.1 0.0 2.4 2 1 0 2 2 2 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|116754856|ref|YP_843974.1| - 0.0092 15.7 0.9 0.046 13.4 0.6 2.1 1 1 0 1 1 1 1 NTPase ArgK PF03308.11 gi|116754856|ref|YP_843974.1| - 0.0095 14.7 0.3 0.03 13.1 0.2 1.8 1 1 0 1 1 1 1 ArgK protein LpxK PF02606.9 gi|116754856|ref|YP_843974.1| - 0.012 14.5 0.0 0.018 14.0 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Glyco_transf_4 PF13439.1 gi|116754856|ref|YP_843974.1| - 0.019 14.6 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 ResIII PF04851.10 gi|116754856|ref|YP_843974.1| - 0.022 14.5 0.1 0.035 13.9 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Glyco_trans_4_2 PF13477.1 gi|116754856|ref|YP_843974.1| - 0.022 14.5 0.1 0.28 10.9 0.1 2.3 1 1 0 1 1 1 0 Glycosyl transferase 4-like AAA_17 PF13207.1 gi|116754856|ref|YP_843974.1| - 0.022 15.5 0.0 0.05 14.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|116754856|ref|YP_843974.1| - 0.025 13.5 0.3 0.037 12.9 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.5 gi|116754856|ref|YP_843974.1| - 0.035 13.3 0.1 0.066 12.4 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 6PF2K PF01591.13 gi|116754856|ref|YP_843974.1| - 0.053 12.5 0.1 0.1 11.6 0.0 1.4 1 1 0 1 1 1 0 6-phosphofructo-2-kinase TrwB_AAD_bind PF10412.4 gi|116754856|ref|YP_843974.1| - 0.064 11.8 0.0 0.11 11.0 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain cobW PF02492.14 gi|116754856|ref|YP_843974.1| - 0.11 11.9 0.2 0.23 10.8 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Prefoldin PF02996.12 gi|116754857|ref|YP_843975.1| - 1.1e-25 89.5 0.6 1.4e-25 89.2 0.4 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|116754857|ref|YP_843975.1| - 1.9e-05 24.3 4.1 0.0025 17.5 0.5 2.3 2 0 0 2 2 2 2 Prefoldin subunit FliD_C PF07195.7 gi|116754857|ref|YP_843975.1| - 0.0025 17.1 0.3 0.0032 16.8 0.2 1.3 1 1 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus DUF4140 PF13600.1 gi|116754857|ref|YP_843975.1| - 0.0073 16.7 3.7 0.065 13.6 0.5 2.2 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) Tektin PF03148.9 gi|116754857|ref|YP_843975.1| - 0.0074 14.8 0.6 0.0074 14.8 0.4 1.7 2 0 0 2 2 2 1 Tektin family Tropomyosin_1 PF12718.2 gi|116754857|ref|YP_843975.1| - 0.0084 15.9 2.9 0.12 12.1 0.9 2.1 2 0 0 2 2 2 1 Tropomyosin like V-SNARE PF05008.10 gi|116754857|ref|YP_843975.1| - 0.026 14.6 10.0 1 9.5 0.1 2.4 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF241 PF03087.9 gi|116754857|ref|YP_843975.1| - 0.027 13.9 0.5 0.13 11.7 0.3 1.8 2 0 0 2 2 2 0 Arabidopsis protein of unknown function IDO PF01231.13 gi|116754857|ref|YP_843975.1| - 0.03 12.7 0.6 0.041 12.3 0.4 1.1 1 0 0 1 1 1 0 Indoleamine 2,3-dioxygenase DUF342 PF03961.8 gi|116754857|ref|YP_843975.1| - 0.033 12.6 0.3 0.21 9.9 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF342) Bcr-Abl_Oligo PF09036.5 gi|116754857|ref|YP_843975.1| - 0.043 13.7 0.5 0.1 12.6 0.4 1.8 1 1 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain Strep_SA_rep PF06696.6 gi|116754857|ref|YP_843975.1| - 0.045 13.5 1.2 0.045 13.5 0.9 2.6 2 0 0 2 2 2 0 Streptococcal surface antigen repeat TPR_MLP1_2 PF07926.7 gi|116754857|ref|YP_843975.1| - 0.065 12.9 5.2 0.21 11.3 1.4 2.0 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein AAA_27 PF13514.1 gi|116754857|ref|YP_843975.1| - 0.071 10.7 4.5 0.11 10.1 3.1 1.3 1 1 0 1 1 1 0 AAA domain SlyX PF04102.7 gi|116754857|ref|YP_843975.1| - 0.088 13.1 0.8 0.088 13.1 0.6 1.9 2 0 0 2 2 2 0 SlyX Adeno_PIX PF03955.9 gi|116754857|ref|YP_843975.1| - 0.1 13.1 2.9 0.21 12.1 0.5 2.0 1 1 1 2 2 2 0 Adenovirus hexon-associated protein (IX) Nsp1_C PF05064.8 gi|116754857|ref|YP_843975.1| - 0.11 12.1 0.2 0.11 12.1 0.2 1.8 2 0 0 2 2 2 0 Nsp1-like C-terminal region Diphthamide_syn PF01866.12 gi|116754857|ref|YP_843975.1| - 0.11 11.6 0.1 0.13 11.4 0.1 1.1 1 0 0 1 1 1 0 Putative diphthamide synthesis protein DUF607 PF04678.8 gi|116754857|ref|YP_843975.1| - 0.15 12.0 0.2 0.26 11.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF607 APG6 PF04111.7 gi|116754857|ref|YP_843975.1| - 0.17 10.9 9.2 2 7.3 3.4 2.1 1 1 0 2 2 2 0 Autophagy protein Apg6 DUF1876 PF08962.6 gi|116754857|ref|YP_843975.1| - 0.17 11.7 0.8 0.41 10.4 0.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1876) WXG100 PF06013.7 gi|116754857|ref|YP_843975.1| - 0.18 11.8 6.9 0.26 11.3 0.3 3.0 3 0 0 3 3 3 0 Proteins of 100 residues with WXG CENP-F_leu_zip PF10473.4 gi|116754857|ref|YP_843975.1| - 0.18 11.6 7.4 2.6 7.9 2.0 2.4 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 OmpH PF03938.9 gi|116754857|ref|YP_843975.1| - 0.27 11.1 5.5 0.32 10.9 1.0 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) RmuC PF02646.11 gi|116754857|ref|YP_843975.1| - 0.37 9.5 3.5 0.15 10.8 0.5 1.6 2 0 0 2 2 2 0 RmuC family ERM PF00769.14 gi|116754857|ref|YP_843975.1| - 0.61 9.5 8.9 2.6 7.4 4.7 2.0 2 0 0 2 2 2 0 Ezrin/radixin/moesin family DUF4226 PF10774.4 gi|116754857|ref|YP_843975.1| - 0.65 10.0 4.5 0.31 11.1 0.9 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4226) BLOC1_2 PF10046.4 gi|116754857|ref|YP_843975.1| - 0.69 10.0 3.9 14 5.8 0.1 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ADIP PF11559.3 gi|116754857|ref|YP_843975.1| - 0.7 9.7 4.9 1 9.2 1.5 1.9 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Seryl_tRNA_N PF02403.17 gi|116754857|ref|YP_843975.1| - 0.79 9.7 8.3 4.1 7.4 2.6 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain priB_priC PF07445.7 gi|116754857|ref|YP_843975.1| - 0.99 8.8 8.3 0.29 10.6 3.8 1.5 2 0 0 2 2 2 0 Primosomal replication protein priB and priC IFT57 PF10498.4 gi|116754857|ref|YP_843975.1| - 1.2 7.8 5.0 0.34 9.5 1.1 1.6 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DUF4349 PF14257.1 gi|116754857|ref|YP_843975.1| - 2.1 7.4 9.5 0.4 9.8 3.5 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) DUF1843 PF08898.5 gi|116754857|ref|YP_843975.1| - 2.4 8.2 11.9 0.3 11.1 2.5 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF1843) PEP-utilisers_N PF05524.8 gi|116754857|ref|YP_843975.1| - 3.3 7.5 9.6 0.23 11.2 1.9 2.3 2 2 0 2 2 2 0 PEP-utilising enzyme, N-terminal Val_tRNA-synt_C PF10458.4 gi|116754857|ref|YP_843975.1| - 3.7 7.6 7.2 16 5.6 1.5 3.0 2 1 1 3 3 3 0 Valyl tRNA synthetase tRNA binding arm Ribosomal_L18ae PF01775.12 gi|116754858|ref|YP_843976.1| - 4e-08 33.2 0.0 4.9e-08 32.9 0.0 1.2 1 1 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|116754859|ref|YP_843977.1| - 2.8e-70 235.4 0.3 3.3e-70 235.2 0.2 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|116754860|ref|YP_843978.1| - 2.2e-25 88.1 1.6 2.5e-25 87.9 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|116754861|ref|YP_843979.1| - 1.8e-21 75.3 10.1 1.8e-21 75.3 7.0 1.3 2 0 0 2 2 2 1 Ribosomal L39 protein Cache_3 PF14827.1 gi|116754861|ref|YP_843979.1| - 0.058 13.2 0.0 0.058 13.2 0.0 1.0 1 0 0 1 1 1 0 Sensory domain of two-component sensor kinase DUF3914 PF13053.1 gi|116754861|ref|YP_843979.1| - 0.084 13.0 0.2 0.084 13.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3914) DUF4100 PF13352.1 gi|116754861|ref|YP_843979.1| - 0.11 11.9 0.1 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4100) QueC PF06508.8 gi|116754862|ref|YP_843980.1| - 3.2e-05 23.3 0.0 9.5e-05 21.7 0.0 1.6 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|116754862|ref|YP_843980.1| - 0.00074 19.0 0.0 0.00098 18.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|116754862|ref|YP_843980.1| - 0.026 14.3 0.0 0.069 12.9 0.0 1.7 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family dsDNA_bind PF01984.15 gi|116754863|ref|YP_843981.1| - 1.5e-31 108.5 19.3 1.7e-31 108.3 13.4 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF3496 PF12001.3 gi|116754863|ref|YP_843981.1| - 0.04 14.1 3.6 0.052 13.8 2.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3496) TFIIE_alpha PF02002.12 gi|116754863|ref|YP_843981.1| - 0.18 11.3 2.7 2.1 7.8 0.5 2.4 1 1 0 2 2 2 0 TFIIE alpha subunit Toxin_39 PF15500.1 gi|116754863|ref|YP_843981.1| - 0.78 9.9 4.5 6.3 7.0 2.5 2.1 1 1 1 2 2 2 0 Putative RNase-like toxin Transposase_1 PF01359.13 gi|116754863|ref|YP_843981.1| - 1.2 8.9 3.6 0.91 9.3 0.8 2.0 2 0 0 2 2 2 0 Transposase (partial DDE domain) DUF2939 PF11159.3 gi|116754863|ref|YP_843981.1| - 3.2 7.9 5.5 2.1 8.5 1.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2939) Ribosomal_S19e PF01090.14 gi|116754864|ref|YP_843982.1| - 1.6e-59 199.3 0.1 1.8e-59 199.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_45 PF14947.1 gi|116754864|ref|YP_843982.1| - 0.0032 17.2 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|116754864|ref|YP_843982.1| - 0.014 15.7 0.3 0.031 14.6 0.1 1.8 2 1 0 2 2 2 0 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|116754864|ref|YP_843982.1| - 0.015 15.3 0.0 0.078 13.0 0.0 1.9 2 0 0 2 2 2 0 Mrr N-terminal domain TrmB PF01978.14 gi|116754864|ref|YP_843982.1| - 0.041 13.6 0.0 0.074 12.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|116754864|ref|YP_843982.1| - 0.042 13.2 0.1 0.15 11.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family RuvB_C PF05491.8 gi|116754864|ref|YP_843982.1| - 0.048 13.2 0.0 1.6 8.3 0.0 2.3 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus HTH_12 PF08461.5 gi|116754864|ref|YP_843982.1| - 0.088 12.5 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain CCG PF02754.11 gi|116754865|ref|YP_843983.1| - 1.8e-26 91.9 0.1 3.8e-12 46.0 0.0 2.2 2 0 0 2 2 2 2 Cysteine-rich domain GAGA PF09237.6 gi|116754865|ref|YP_843983.1| - 0.021 14.3 0.2 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 GAGA factor Fer4_8 PF13183.1 gi|116754866|ref|YP_843984.1| - 4.8e-11 42.5 6.0 7.3e-11 41.9 4.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754866|ref|YP_843984.1| - 1.2e-10 41.5 5.3 2e-10 40.8 3.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754866|ref|YP_843984.1| - 3e-08 33.7 2.6 5.3e-08 33.0 1.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754866|ref|YP_843984.1| - 1.4e-06 27.9 4.3 3e-06 26.9 3.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116754866|ref|YP_843984.1| - 6.1e-06 26.5 3.0 1.5e-05 25.2 2.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|116754866|ref|YP_843984.1| - 0.0013 18.2 10.7 0.14 11.8 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116754866|ref|YP_843984.1| - 0.002 17.9 11.1 0.0063 16.3 7.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754866|ref|YP_843984.1| - 0.0028 17.4 13.5 0.072 13.0 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|116754866|ref|YP_843984.1| - 0.0047 17.6 6.8 0.12 13.1 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|116754866|ref|YP_843984.1| - 0.0051 17.0 11.7 0.12 12.7 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|116754866|ref|YP_843984.1| - 0.0058 17.0 10.8 0.055 13.8 0.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|116754866|ref|YP_843984.1| - 0.073 13.4 6.3 0.14 12.5 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|116754866|ref|YP_843984.1| - 0.11 13.0 4.4 3.4 8.2 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|116754866|ref|YP_843984.1| - 0.23 11.3 10.4 0.26 11.2 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|116754866|ref|YP_843984.1| - 0.27 10.8 4.5 0.38 10.3 0.1 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|116754866|ref|YP_843984.1| - 6.3 7.6 14.3 11 6.8 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|116754867|ref|YP_843985.1| - 9.1e-38 126.3 80.1 2.9e-08 32.9 3.3 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116754867|ref|YP_843985.1| - 1e-29 101.0 77.3 9.8e-07 28.3 2.5 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116754867|ref|YP_843985.1| - 1e-28 99.4 57.1 3.9e-09 36.7 6.3 5.0 2 1 4 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754867|ref|YP_843985.1| - 3.3e-26 90.8 59.5 2.4e-09 36.8 5.1 5.8 3 3 3 6 6 6 6 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|116754867|ref|YP_843985.1| - 1e-25 89.3 55.9 1.1e-08 34.7 6.5 5.6 4 2 2 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754867|ref|YP_843985.1| - 1.5e-22 79.5 62.9 4.8e-07 29.9 7.9 5.9 1 1 7 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754867|ref|YP_843985.1| - 1.6e-22 78.0 75.9 3e-06 26.8 2.3 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_8 PF13183.1 gi|116754867|ref|YP_843985.1| - 5.5e-19 67.9 55.7 5e-05 23.2 7.9 5.6 2 2 5 7 7 7 7 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754867|ref|YP_843985.1| - 7e-17 61.9 52.7 1.4e-05 25.6 5.6 7.0 3 2 3 6 6 6 6 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|116754867|ref|YP_843985.1| - 2.8e-12 47.0 60.4 0.0059 17.1 0.5 8.3 8 0 0 8 8 8 6 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|116754867|ref|YP_843985.1| - 6.4e-11 41.6 78.6 0.00025 21.1 2.3 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_17 PF13534.1 gi|116754867|ref|YP_843985.1| - 7.6e-10 38.9 57.1 0.0077 16.5 5.6 7.3 3 2 5 8 8 8 6 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|116754867|ref|YP_843985.1| - 2.6e-09 37.3 62.4 0.0078 16.6 1.2 8.3 7 1 1 8 8 8 6 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|116754867|ref|YP_843985.1| - 7.6e-06 26.1 99.6 0.016 15.6 4.1 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_11 PF13247.1 gi|116754867|ref|YP_843985.1| - 4.3e-05 23.3 32.3 0.00059 19.6 1.3 4.4 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|116754867|ref|YP_843985.1| - 0.00014 22.1 66.5 0.059 13.7 2.0 8.3 7 1 1 8 8 8 5 4Fe-4S single cluster domain FlpD PF02662.11 gi|116754868|ref|YP_843986.1| - 1.6e-52 176.3 1.1 2.7e-50 169.2 0.0 3.3 4 0 0 4 4 3 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|116754868|ref|YP_843986.1| - 6.1e-21 73.0 49.7 8e-08 31.5 1.2 5.3 5 1 0 5 5 4 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116754868|ref|YP_843986.1| - 9e-18 64.4 30.8 2.4e-10 40.6 7.0 4.1 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754868|ref|YP_843986.1| - 1.1e-16 59.6 46.9 8.9e-06 25.3 2.2 5.2 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|116754868|ref|YP_843986.1| - 1.8e-16 59.6 25.7 4.9e-09 35.8 7.1 3.8 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|116754868|ref|YP_843986.1| - 2.2e-16 58.9 54.9 5.9e-07 29.0 2.6 5.5 6 0 0 6 6 5 4 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|116754868|ref|YP_843986.1| - 2.9e-14 53.4 1.9 4.9e-13 49.4 0.8 2.9 3 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|116754868|ref|YP_843986.1| - 1e-13 50.9 1.6 3.1e-08 32.9 0.9 3.3 3 0 0 3 3 3 2 FAD dependent oxidoreductase Fer4_15 PF13459.1 gi|116754868|ref|YP_843986.1| - 1.3e-13 51.3 24.5 0.00032 21.1 1.5 4.7 4 0 0 4 4 4 3 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|116754868|ref|YP_843986.1| - 3.2e-13 49.3 29.5 2.4e-09 36.9 7.7 4.9 5 1 1 6 6 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754868|ref|YP_843986.1| - 1.5e-12 47.6 34.7 1.9e-08 34.4 6.6 3.2 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754868|ref|YP_843986.1| - 2.6e-12 47.2 23.5 0.0011 19.6 0.2 4.7 4 0 0 4 4 4 3 4Fe-4S double cluster binding domain FAD_oxidored PF12831.2 gi|116754868|ref|YP_843986.1| - 1.5e-09 37.4 0.6 2.6e-09 36.6 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|116754868|ref|YP_843986.1| - 6.4e-08 31.8 0.9 1.3e-07 30.8 0.7 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|116754868|ref|YP_843986.1| - 8.2e-07 28.9 0.1 2.2e-06 27.5 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|116754868|ref|YP_843986.1| - 6.7e-06 26.4 1.0 2.2e-05 24.7 0.3 2.2 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_8 PF13183.1 gi|116754868|ref|YP_843986.1| - 7.4e-06 25.8 35.2 0.0025 17.7 0.2 4.2 3 2 4 7 7 6 5 4Fe-4S dicluster domain GIDA PF01134.17 gi|116754868|ref|YP_843986.1| - 9.6e-06 24.6 0.2 9.6e-06 24.6 0.1 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|116754868|ref|YP_843986.1| - 1.9e-05 23.8 0.0 3.8e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|116754868|ref|YP_843986.1| - 2e-05 23.8 0.6 3.8e-05 22.8 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_4 PF12800.2 gi|116754868|ref|YP_843986.1| - 2.1e-05 24.4 48.0 0.0014 18.7 2.9 5.7 6 0 0 6 6 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|116754868|ref|YP_843986.1| - 8.3e-05 22.8 33.4 0.078 13.3 0.3 4.4 4 1 1 5 5 4 3 4Fe-4S dicluster domain HI0933_like PF03486.9 gi|116754868|ref|YP_843986.1| - 0.00011 20.7 0.3 0.00017 20.2 0.2 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_9 PF13454.1 gi|116754868|ref|YP_843986.1| - 0.00029 20.6 0.9 1.7 8.4 0.1 3.4 3 0 0 3 3 3 2 FAD-NAD(P)-binding Fer4_13 PF13370.1 gi|116754868|ref|YP_843986.1| - 0.00034 20.9 36.0 0.0058 16.9 2.2 4.3 4 0 0 4 4 3 3 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|116754868|ref|YP_843986.1| - 0.00045 20.5 35.6 0.017 15.5 1.5 5.1 4 1 1 5 5 4 3 4Fe-4S dicluster domain Pyr_redox_3 PF13738.1 gi|116754868|ref|YP_843986.1| - 0.00047 20.2 0.0 0.0082 16.2 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|116754868|ref|YP_843986.1| - 0.00052 19.2 0.5 0.0039 16.3 0.2 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|116754868|ref|YP_843986.1| - 0.00055 18.9 0.2 0.0011 17.9 0.1 1.5 1 0 0 1 1 1 1 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|116754868|ref|YP_843986.1| - 0.047 13.3 0.4 0.091 12.4 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|116754868|ref|YP_843986.1| - 0.065 13.3 0.1 4.8 7.2 0.0 3.0 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|116754868|ref|YP_843986.1| - 0.078 13.2 0.4 1.5 9.1 0.1 3.1 3 1 0 3 3 3 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|116754868|ref|YP_843986.1| - 0.089 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|116754868|ref|YP_843986.1| - 0.14 10.7 0.5 0.4 9.2 0.2 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Fer4_11 PF13247.1 gi|116754868|ref|YP_843986.1| - 0.17 11.7 23.1 0.041 13.7 2.7 3.3 3 1 0 3 3 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|116754868|ref|YP_843986.1| - 0.36 11.5 66.3 0.058 13.9 2.8 6.4 7 0 0 7 7 4 0 4Fe-4S binding domain T3SS_LEE_assoc PF13327.1 gi|116754869|ref|YP_843987.1| - 0.044 13.3 0.0 0.062 12.8 0.0 1.1 1 0 0 1 1 1 0 Type III secretion system subunit Trypsin_2 PF13365.1 gi|116754869|ref|YP_843987.1| - 0.12 12.3 0.0 0.35 10.8 0.0 1.8 1 1 0 1 1 1 0 Trypsin-like peptidase domain Rpr2 PF04032.11 gi|116754870|ref|YP_843988.1| - 2.3e-12 46.6 0.1 2.8e-12 46.3 0.1 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain RNHCP PF12647.2 gi|116754870|ref|YP_843988.1| - 0.015 15.0 0.5 0.019 14.7 0.3 1.2 1 0 0 1 1 1 0 RNHCP domain zf-Sec23_Sec24 PF04810.10 gi|116754870|ref|YP_843988.1| - 0.032 13.7 3.0 0.92 9.1 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DUF164 PF02591.10 gi|116754870|ref|YP_843988.1| - 0.056 13.2 1.3 0.095 12.5 0.9 1.4 1 0 0 1 1 1 0 Putative zinc ribbon domain zf-TFIIB PF13453.1 gi|116754870|ref|YP_843988.1| - 0.62 9.3 3.8 5.3 6.3 0.2 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger Ham1p_like PF01725.11 gi|116754872|ref|YP_843990.1| - 4.2e-47 159.9 0.0 4.8e-47 159.7 0.0 1.0 1 0 0 1 1 1 1 Ham1 family S4 PF01479.20 gi|116754873|ref|YP_843991.1| - 6.9e-13 47.8 0.3 1.2e-12 47.0 0.2 1.4 1 0 0 1 1 1 1 S4 domain FtsJ PF01728.14 gi|116754873|ref|YP_843991.1| - 2.5e-10 40.6 0.0 3.3e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_11 PF08241.7 gi|116754873|ref|YP_843991.1| - 3.6e-06 27.3 0.0 6.1e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.1 gi|116754873|ref|YP_843991.1| - 2.1e-05 24.0 0.1 4.5e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 S4 domain Methyltransf_26 PF13659.1 gi|116754873|ref|YP_843991.1| - 4e-05 23.6 0.0 8.3e-05 22.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116754873|ref|YP_843991.1| - 8.9e-05 23.0 0.2 0.00059 20.3 0.2 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116754873|ref|YP_843991.1| - 0.0002 21.1 0.0 0.00066 19.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|116754873|ref|YP_843991.1| - 0.0011 18.5 0.0 0.003 17.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain ThiS PF02597.15 gi|116754873|ref|YP_843991.1| - 0.0015 18.8 0.0 0.007 16.7 0.0 2.0 2 1 0 2 2 2 1 ThiS family Methyltransf_12 PF08242.7 gi|116754873|ref|YP_843991.1| - 0.0059 17.0 0.0 0.012 16.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|116754873|ref|YP_843991.1| - 0.075 13.4 0.1 0.16 12.3 0.1 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|116754873|ref|YP_843991.1| - 0.15 12.9 0.2 1.5 9.6 0.0 2.2 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_9 PF08003.6 gi|116754873|ref|YP_843991.1| - 0.18 10.4 0.0 0.28 9.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Ion_trans_2 PF07885.11 gi|116754874|ref|YP_843992.1| - 7e-16 57.7 5.8 7e-16 57.7 4.0 2.8 3 0 0 3 3 3 1 Ion channel Ion_trans PF00520.26 gi|116754874|ref|YP_843992.1| - 1.1e-14 54.1 20.2 1.1e-14 54.1 14.0 1.5 2 0 0 2 2 2 1 Ion transport protein zf-ribbon_3 PF13248.1 gi|116754874|ref|YP_843992.1| - 1.7e-05 23.8 0.2 2.8e-05 23.1 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|116754874|ref|YP_843992.1| - 0.00078 19.2 0.2 0.0013 18.5 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|116754874|ref|YP_843992.1| - 0.0093 15.6 2.4 1.4 8.7 0.0 2.3 2 0 0 2 2 2 2 Nudix N-terminal Prok-RING_1 PF14446.1 gi|116754874|ref|YP_843992.1| - 0.054 13.2 0.2 0.088 12.5 0.1 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|116754874|ref|YP_843992.1| - 0.39 10.2 1.7 0.95 9.0 1.2 1.6 1 1 0 1 1 1 0 zinc-ribbon domain DUF165 PF02592.10 gi|116754875|ref|YP_843993.1| - 6.4e-44 149.6 8.3 6.4e-44 149.6 5.7 1.7 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 DUF2985 PF11204.3 gi|116754875|ref|YP_843993.1| - 0.061 13.0 0.2 0.061 13.0 0.2 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2985) FMN_red PF03358.10 gi|116754876|ref|YP_843994.1| - 5e-27 94.2 0.0 6.8e-27 93.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|116754876|ref|YP_843994.1| - 2.8e-15 56.3 0.0 4.1e-15 55.8 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold IGPD PF00475.13 gi|116754877|ref|YP_843995.1| - 4.8e-42 143.2 0.0 6.6e-42 142.7 0.0 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Meth_synt_2 PF01717.13 gi|116754878|ref|YP_843996.1| - 0.00035 19.6 0.0 0.21 10.5 0.0 2.4 2 1 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain PALP PF00291.20 gi|116754879|ref|YP_843997.1| - 7.5e-27 94.3 0.0 1.2e-26 93.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.1 gi|116754879|ref|YP_843997.1| - 4.6e-23 81.0 0.0 1.7e-22 79.2 0.0 2.0 2 0 0 2 2 2 1 Threonine synthase N terminus HAD PF12710.2 gi|116754879|ref|YP_843997.1| - 0.013 15.6 0.0 0.2 11.8 0.0 2.1 1 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Metallophos_2 PF12850.2 gi|116754880|ref|YP_843998.1| - 1.7e-26 92.9 0.1 2e-26 92.7 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|116754880|ref|YP_843998.1| - 0.00035 20.0 5.8 0.012 14.9 4.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|116754880|ref|YP_843998.1| - 0.079 12.0 0.3 0.28 10.2 0.1 1.8 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily DNA_binding_1 PF01035.15 gi|116754881|ref|YP_843999.1| - 1.9e-30 104.3 0.0 2.7e-30 103.9 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF4277 PF14104.1 gi|116754882|ref|YP_844000.1| - 8.8e-12 45.2 0.1 8.8e-12 45.2 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) Peripla_BP_2 PF01497.13 gi|116754883|ref|YP_844001.1| - 5.2e-30 104.3 0.0 7.1e-30 103.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein EF-hand_5 PF13202.1 gi|116754883|ref|YP_844001.1| - 0.059 12.7 0.7 0.13 11.6 0.5 1.5 1 0 0 1 1 1 0 EF hand UvrD_C PF13361.1 gi|116754883|ref|YP_844001.1| - 0.088 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain Peripla_BP_2 PF01497.13 gi|116754884|ref|YP_844002.1| - 1.2e-27 96.5 0.0 2.6e-27 95.5 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein DDE_Tnp_1_5 PF13737.1 gi|116754885|ref|YP_844003.1| - 1.2e-28 99.4 0.0 2.9e-27 95.0 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|116754885|ref|YP_844003.1| - 1.9e-20 73.3 0.4 4.5e-20 72.1 0.2 1.6 1 1 0 1 1 1 1 Transposase DDE domain rve PF00665.21 gi|116754885|ref|YP_844003.1| - 0.12 12.4 0.1 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain Peripla_BP_2 PF01497.13 gi|116754886|ref|YP_844004.1| - 1.3e-23 83.3 0.1 2e-23 82.8 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Heme_oxygenase PF01126.15 gi|116754886|ref|YP_844004.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Heme oxygenase Peripla_BP_2 PF01497.13 gi|116754887|ref|YP_844005.1| - 4.9e-26 91.3 0.0 7.2e-26 90.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein HlyD_3 PF13437.1 gi|116754887|ref|YP_844005.1| - 0.025 14.8 0.1 0.057 13.7 0.1 1.5 1 0 0 1 1 1 0 HlyD family secretion protein YcxB PF14317.1 gi|116754887|ref|YP_844005.1| - 0.032 13.4 0.0 0.074 12.3 0.0 1.6 1 0 0 1 1 1 0 YcxB-like protein Dockerin_1 PF00404.13 gi|116754887|ref|YP_844005.1| - 0.27 11.0 1.5 0.93 9.3 0.0 2.4 2 0 0 2 2 2 0 Dockerin type I repeat CobN-Mg_chel PF02514.11 gi|116754888|ref|YP_844006.1| - 0 1266.0 0.0 0 1265.8 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CAP PF00188.21 gi|116754888|ref|YP_844006.1| - 0.078 13.4 0.3 0.22 12.0 0.2 1.7 1 0 0 1 1 1 0 Cysteine-rich secretory protein family DUF169 PF02596.10 gi|116754889|ref|YP_844007.1| - 1.7e-13 50.5 0.1 2.7e-13 49.8 0.1 1.3 1 1 0 1 1 1 1 Uncharacterised ArCR, COG2043 Stress-antifung PF01657.12 gi|116754889|ref|YP_844007.1| - 0.1 12.9 0.1 0.22 11.8 0.1 1.5 1 0 0 1 1 1 0 Salt stress response/antifungal DUF4277 PF14104.1 gi|116754890|ref|YP_844008.1| - 1e-43 148.1 0.0 2.4e-43 146.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|116754890|ref|YP_844008.1| - 3.5e-11 43.0 0.8 2e-10 40.6 0.6 2.0 1 1 0 1 1 1 1 Transposase DDE domain AIRC PF00731.15 gi|116754891|ref|YP_844009.1| - 1.9e-22 79.1 6.5 2.1e-22 78.9 3.2 1.8 2 0 0 2 2 2 1 AIR carboxylase Cna_B PF05738.8 gi|116754892|ref|YP_844010.1| - 1.5e-53 178.4 33.0 1.2e-07 31.3 0.1 9.2 8 0 0 8 8 8 7 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|116754892|ref|YP_844010.1| - 2.9e-49 165.0 40.1 2.9e-07 30.4 1.2 10.6 8 1 0 8 8 8 7 Carboxypeptidase regulatory-like domain fn3_3 PF14686.1 gi|116754892|ref|YP_844010.1| - 5.1e-16 58.5 22.0 0.092 12.8 0.1 10.0 7 2 1 8 8 8 6 Polysaccharide lyase family 4, domain II DUF2012 PF09430.5 gi|116754892|ref|YP_844010.1| - 3.8e-14 52.5 0.3 0.47 10.2 0.0 7.3 6 1 1 7 7 7 5 Protein of unknown function (DUF2012) DUF4399 PF14347.1 gi|116754892|ref|YP_844010.1| - 5.7e-08 32.6 0.0 15 5.6 0.0 10.8 13 0 0 13 13 13 1 Domain of unknown function (DUF4399) Y_Y_Y PF07495.8 gi|116754892|ref|YP_844010.1| - 3.6e-05 23.4 32.9 1.1 9.0 0.1 10.6 12 0 0 12 12 12 3 Y_Y_Y domain Dioxygenase_C PF00775.16 gi|116754892|ref|YP_844010.1| - 5.6e-05 22.4 16.5 11 5.2 0.0 9.8 10 0 0 10 10 10 2 Dioxygenase Enhancin PF03272.8 gi|116754892|ref|YP_844010.1| - 0.85 7.4 0.1 4.2 5.1 0.1 1.9 2 0 0 2 2 2 0 Viral enhancin protein AAA_16 PF13191.1 gi|116754893|ref|YP_844011.1| - 8.2e-13 48.7 0.0 3.3e-12 46.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.6 gi|116754893|ref|YP_844011.1| - 3.6e-12 45.8 0.1 1.1e-11 44.2 0.1 1.8 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|116754893|ref|YP_844011.1| - 3.2e-08 33.8 0.0 9e-08 32.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|116754893|ref|YP_844011.1| - 0.00068 19.2 0.0 0.001 18.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|116754893|ref|YP_844011.1| - 0.00072 19.7 0.0 0.0017 18.5 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|116754893|ref|YP_844011.1| - 0.0012 18.5 0.3 0.003 17.2 0.0 1.8 2 0 0 2 2 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|116754893|ref|YP_844011.1| - 0.0024 17.6 0.0 0.0062 16.2 0.0 1.7 2 0 0 2 2 2 1 Archaeal ATPase PadR PF03551.9 gi|116754893|ref|YP_844011.1| - 0.013 15.2 0.2 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family AAA_24 PF13479.1 gi|116754893|ref|YP_844011.1| - 0.029 13.9 0.0 0.071 12.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.8 gi|116754893|ref|YP_844011.1| - 0.038 12.9 0.0 0.53 9.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|116754893|ref|YP_844011.1| - 0.06 12.7 0.0 7 6.0 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|116754893|ref|YP_844011.1| - 0.09 12.6 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Phage-MuB_C PF09077.6 gi|116754893|ref|YP_844011.1| - 0.095 12.3 0.0 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 Mu B transposition protein, C terminal NTPase_1 PF03266.10 gi|116754893|ref|YP_844011.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 NTPase DUF2075 PF09848.4 gi|116754893|ref|YP_844011.1| - 0.14 11.1 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SRP54 PF00448.17 gi|116754893|ref|YP_844011.1| - 0.15 11.5 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|116754893|ref|YP_844011.1| - 0.16 11.6 0.0 0.37 10.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.4 gi|116754893|ref|YP_844011.1| - 0.18 10.3 0.0 0.28 9.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain HTH_AraC PF00165.18 gi|116754893|ref|YP_844011.1| - 0.21 11.4 1.0 0.32 10.8 0.1 1.8 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family DUF2099 PF09872.4 gi|116754894|ref|YP_844012.1| - 4.2e-110 366.8 0.1 4.8e-110 366.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) tRNA_SAD PF07973.9 gi|116754895|ref|YP_844013.1| - 1.3e-15 56.9 0.7 2.3e-15 56.2 0.5 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|116754895|ref|YP_844013.1| - 2e-11 42.9 0.0 2.6e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DUF2458 PF10454.4 gi|116754895|ref|YP_844013.1| - 0.099 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) ATP-synt_D PF01813.12 gi|116754896|ref|YP_844014.1| - 1e-63 214.4 7.1 1e-63 214.4 4.9 1.3 2 0 0 2 2 2 1 ATP synthase subunit D Ead_Ea22 PF13935.1 gi|116754896|ref|YP_844014.1| - 0.63 10.3 5.7 0.2 12.0 1.8 1.7 2 0 0 2 2 2 0 Ead/Ea22-like protein ATP-synt_ab PF00006.20 gi|116754897|ref|YP_844015.1| - 1.4e-54 184.8 0.0 1.8e-54 184.4 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|116754897|ref|YP_844015.1| - 8.4e-16 58.4 0.0 1.4e-15 57.7 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|116754897|ref|YP_844015.1| - 9.5e-12 44.9 2.0 9.5e-12 44.9 1.4 2.2 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|116754897|ref|YP_844015.1| - 4.6e-06 26.4 1.5 1.3e-05 25.0 1.0 1.8 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|116754898|ref|YP_844016.1| - 1.5e-93 312.2 0.0 1.9e-93 311.9 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|116754898|ref|YP_844016.1| - 5.5e-16 59.0 0.4 1.1e-15 58.0 0.3 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|116754898|ref|YP_844016.1| - 3.8e-11 43.0 1.1 1.1e-10 41.6 0.8 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.1 gi|116754898|ref|YP_844016.1| - 0.0028 17.3 1.0 0.012 15.2 0.0 2.2 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.17 gi|116754898|ref|YP_844016.1| - 0.0059 16.6 0.4 0.1 12.6 0.0 2.7 3 0 0 3 3 3 1 Peptidase family M23 Biotin_lipoyl PF00364.17 gi|116754898|ref|YP_844016.1| - 0.038 13.6 0.5 0.11 12.1 0.3 1.8 1 0 0 1 1 1 0 Biotin-requiring enzyme ATP-synt_F PF01990.12 gi|116754899|ref|YP_844017.1| - 1.4e-19 70.2 0.3 1.6e-19 70.0 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit CTD_bind PF04818.8 gi|116754899|ref|YP_844017.1| - 0.039 14.1 0.0 1.4 9.1 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase II-binding domain. THF_DHG_CYH PF00763.18 gi|116754899|ref|YP_844017.1| - 0.078 13.0 0.2 0.18 11.8 0.1 1.7 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Vezatin PF12632.2 gi|116754899|ref|YP_844017.1| - 0.11 11.6 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Mysoin-binding motif of peroxisomes MCR_alpha PF02249.12 gi|116754899|ref|YP_844017.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, C-terminal domain vATP-synt_AC39 PF01992.11 gi|116754900|ref|YP_844018.1| - 6.2e-80 268.8 1.3 7.1e-80 268.6 0.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.13 gi|116754901|ref|YP_844019.1| - 2.5e-23 82.4 15.8 4.6e-22 78.2 11.0 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|116754901|ref|YP_844019.1| - 0.0016 18.2 10.2 0.0028 17.4 7.1 1.4 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) Gag_p24 PF00607.15 gi|116754901|ref|YP_844019.1| - 0.014 14.9 0.2 0.019 14.5 0.2 1.2 1 0 0 1 1 1 0 gag gene protein p24 (core nucleocapsid protein) IpaD PF06511.6 gi|116754901|ref|YP_844019.1| - 0.092 11.7 2.4 0.11 11.4 1.6 1.1 1 0 0 1 1 1 0 Invasion plasmid antigen IpaD DUF3552 PF12072.3 gi|116754901|ref|YP_844019.1| - 0.096 11.8 11.6 0.13 11.4 8.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) T2SM PF04612.7 gi|116754901|ref|YP_844019.1| - 0.13 12.0 2.2 0.18 11.6 1.5 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M Saccharop_dh_N PF04455.7 gi|116754901|ref|YP_844019.1| - 0.26 11.4 2.6 0.37 10.9 0.9 1.9 1 1 1 2 2 2 0 LOR/SDH bifunctional enzyme conserved region DUF1451 PF07295.6 gi|116754901|ref|YP_844019.1| - 0.54 10.0 3.8 0.81 9.4 2.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) FliH PF02108.11 gi|116754901|ref|YP_844019.1| - 2.5 7.9 7.2 11 5.9 3.8 2.3 1 1 1 2 2 2 0 Flagellar assembly protein FliH ATP-synt_C PF00137.16 gi|116754902|ref|YP_844020.1| - 3.7e-15 55.5 16.0 3.7e-15 55.5 11.1 1.5 1 1 1 2 2 2 1 ATP synthase subunit C SseC PF04888.7 gi|116754902|ref|YP_844020.1| - 1.6 7.9 5.9 1.5 8.0 4.1 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family V_ATPase_I PF01496.14 gi|116754903|ref|YP_844021.1| - 3.3e-90 303.0 18.0 7.7e-63 212.5 2.0 3.0 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family TMF_TATA_bd PF12325.3 gi|116754903|ref|YP_844021.1| - 9.1e-05 22.1 1.2 0.07 12.8 0.1 2.3 2 0 0 2 2 2 2 TATA element modulatory factor 1 TATA binding Prefoldin_2 PF01920.15 gi|116754903|ref|YP_844021.1| - 0.00017 21.2 2.2 0.0028 17.4 0.1 2.5 2 0 0 2 2 2 1 Prefoldin subunit ATG16 PF08614.6 gi|116754903|ref|YP_844021.1| - 0.007 16.2 1.8 0.42 10.4 0.3 2.2 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) Leu_zip PF15294.1 gi|116754903|ref|YP_844021.1| - 0.016 14.3 0.6 0.027 13.6 0.1 1.5 2 0 0 2 2 2 0 Leucine zipper Ax_dynein_light PF10211.4 gi|116754903|ref|YP_844021.1| - 0.023 14.5 0.2 0.023 14.5 0.2 1.7 2 0 0 2 2 2 0 Axonemal dynein light chain Spc24 PF08286.6 gi|116754903|ref|YP_844021.1| - 0.025 14.2 2.5 0.37 10.5 0.3 2.3 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF4140 PF13600.1 gi|116754903|ref|YP_844021.1| - 0.03 14.7 1.4 1.5 9.3 0.1 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) bZIP_1 PF00170.16 gi|116754903|ref|YP_844021.1| - 0.053 13.4 1.3 0.15 12.0 0.9 1.7 1 0 0 1 1 1 0 bZIP transcription factor TPR_MLP1_2 PF07926.7 gi|116754903|ref|YP_844021.1| - 0.1 12.3 2.1 0.83 9.3 1.5 2.1 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein CENP-F_leu_zip PF10473.4 gi|116754903|ref|YP_844021.1| - 0.13 12.1 2.6 1.5 8.6 0.4 2.4 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DivIC PF04977.10 gi|116754903|ref|YP_844021.1| - 0.15 11.5 5.3 0.43 10.1 1.2 2.5 2 0 0 2 2 2 0 Septum formation initiator APG6 PF04111.7 gi|116754903|ref|YP_844021.1| - 0.18 10.8 0.5 0.38 9.7 0.0 1.7 2 0 0 2 2 2 0 Autophagy protein Apg6 Prefoldin PF02996.12 gi|116754903|ref|YP_844021.1| - 0.29 10.7 4.2 0.55 9.8 0.7 2.3 2 0 0 2 2 2 0 Prefoldin subunit Med4 PF10018.4 gi|116754903|ref|YP_844021.1| - 0.78 9.1 3.0 9 5.6 0.5 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 TMF_DNA_bd PF12329.3 gi|116754903|ref|YP_844021.1| - 8 6.3 10.5 1.3 8.8 1.8 2.6 3 0 0 3 3 2 0 TATA element modulatory factor 1 DNA binding V-ATPase_G PF03179.10 gi|116754904|ref|YP_844022.1| - 3.5e-07 30.4 12.3 4e-07 30.2 8.5 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|116754904|ref|YP_844022.1| - 1.1e-05 25.2 18.8 4.1e-05 23.3 12.7 1.8 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) Paramyxo_C PF01692.13 gi|116754904|ref|YP_844022.1| - 0.031 13.8 1.2 0.038 13.5 0.9 1.1 1 0 0 1 1 1 0 Paramyxovirus non-structural protein c RE_Alw26IDE PF09665.5 gi|116754904|ref|YP_844022.1| - 0.065 11.9 3.3 0.07 11.8 2.3 1.0 1 0 0 1 1 1 0 Type II restriction endonuclease (RE_Alw26IDE) DUF1995 PF09353.5 gi|116754904|ref|YP_844022.1| - 0.11 12.1 3.0 0.12 11.9 2.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1995) Exonuc_VII_L PF02601.10 gi|116754904|ref|YP_844022.1| - 0.14 11.2 3.1 0.18 10.9 2.2 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit LUC7 PF03194.10 gi|116754904|ref|YP_844022.1| - 0.31 10.5 4.5 0.38 10.2 3.1 1.1 1 0 0 1 1 1 0 LUC7 N_terminus DUF3552 PF12072.3 gi|116754904|ref|YP_844022.1| - 0.48 9.6 15.9 0.12 11.6 6.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) vATP-synt_E PF01991.13 gi|116754904|ref|YP_844022.1| - 0.68 9.1 13.3 0.28 10.4 7.1 1.8 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit Muted PF14942.1 gi|116754904|ref|YP_844022.1| - 0.81 9.5 4.6 0.99 9.2 3.2 1.1 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein MbeB_N PF04837.7 gi|116754904|ref|YP_844022.1| - 0.99 9.5 4.6 0.57 10.3 0.3 2.4 2 1 0 2 2 2 0 MbeB-like, N-term conserved region OmpH PF03938.9 gi|116754904|ref|YP_844022.1| - 1 9.2 11.7 1.2 9.0 8.1 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HAUS6_N PF14661.1 gi|116754904|ref|YP_844022.1| - 1.6 7.9 6.1 1.7 7.9 4.2 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus DivIVA PF05103.8 gi|116754904|ref|YP_844022.1| - 2.7 8.0 12.3 4.4 7.3 8.5 1.5 1 1 0 1 1 1 0 DivIVA protein DUF4407 PF14362.1 gi|116754904|ref|YP_844022.1| - 4.5 6.1 8.9 5.6 5.8 6.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RuBisCO_large PF00016.15 gi|116754905|ref|YP_844023.1| - 5.7e-67 225.7 3.3 5.5e-66 222.5 2.3 2.0 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|116754905|ref|YP_844023.1| - 1.8e-14 53.4 0.2 8.3e-13 48.1 0.0 2.6 2 1 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain PEP_mutase PF13714.1 gi|116754905|ref|YP_844023.1| - 0.013 14.6 0.4 0.051 12.7 0.1 2.0 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Ribosomal_S13 PF00416.17 gi|116754907|ref|YP_844025.1| - 2e-29 102.1 0.7 2.7e-29 101.7 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|116754907|ref|YP_844025.1| - 0.032 12.7 0.0 0.035 12.6 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.20 gi|116754908|ref|YP_844026.1| - 7.9e-18 63.6 1.1 1.6e-17 62.6 0.1 2.0 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|116754908|ref|YP_844026.1| - 4.8e-05 23.6 0.1 9.4e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|116754909|ref|YP_844027.1| - 5.7e-42 142.3 1.0 7e-42 142.0 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|116754910|ref|YP_844028.1| - 8.8e-21 74.1 0.0 2.9e-20 72.4 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|116754910|ref|YP_844028.1| - 1.3e-15 56.2 0.0 1.7e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.22 gi|116754910|ref|YP_844028.1| - 3.1e-08 32.8 11.3 0.00011 21.6 2.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|116754910|ref|YP_844028.1| - 1.9e-07 31.2 9.6 1.9e-07 31.2 6.7 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116754910|ref|YP_844028.1| - 6e-07 29.7 8.6 6e-07 29.7 6.0 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754910|ref|YP_844028.1| - 1.5e-06 27.8 8.8 1.5e-06 27.8 6.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754910|ref|YP_844028.1| - 1.1e-05 26.0 3.2 0.00036 21.2 0.3 2.8 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|116754910|ref|YP_844028.1| - 0.00023 21.1 10.7 0.00023 21.1 7.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754910|ref|YP_844028.1| - 0.00069 19.9 13.3 0.065 13.5 2.2 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|116754910|ref|YP_844028.1| - 0.00071 19.3 2.3 0.00071 19.3 1.6 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116754910|ref|YP_844028.1| - 0.0021 17.8 9.9 0.0021 17.8 6.9 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754910|ref|YP_844028.1| - 0.0038 17.0 3.3 0.0038 17.0 2.3 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|116754910|ref|YP_844028.1| - 0.0049 17.1 2.2 0.0049 17.1 1.5 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|116754910|ref|YP_844028.1| - 0.0066 16.9 6.2 0.0066 16.9 4.3 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|116754910|ref|YP_844028.1| - 0.075 12.9 5.0 0.14 12.0 3.0 1.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|116754910|ref|YP_844028.1| - 0.98 9.8 16.6 0.35 11.3 5.5 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain TPR_1 PF00515.23 gi|116754911|ref|YP_844029.1| - 8.4e-43 142.2 14.9 2.7e-10 39.4 0.4 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.1 gi|116754911|ref|YP_844029.1| - 3e-39 132.5 15.4 3.6e-15 55.3 3.9 3.1 3 0 0 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|116754911|ref|YP_844029.1| - 1.4e-36 121.4 15.8 1.8e-08 33.6 0.5 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|116754911|ref|YP_844029.1| - 2.8e-26 91.5 12.4 2e-08 34.6 2.8 4.1 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|116754911|ref|YP_844029.1| - 2.3e-23 80.3 14.4 1.8e-08 33.8 0.4 5.9 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|116754911|ref|YP_844029.1| - 3.6e-21 75.2 14.0 8.6e-07 29.2 1.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|116754911|ref|YP_844029.1| - 5.5e-21 72.7 12.5 0.00018 21.0 0.1 5.9 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|116754911|ref|YP_844029.1| - 1.3e-18 65.7 14.4 1.1e-05 25.6 0.2 6.2 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|116754911|ref|YP_844029.1| - 3e-17 62.3 21.9 1.2e-06 28.3 3.4 3.8 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|116754911|ref|YP_844029.1| - 4.8e-15 55.1 6.2 0.00017 21.3 0.2 4.0 1 1 2 4 4 4 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|116754911|ref|YP_844029.1| - 8.8e-14 51.4 12.3 9.2e-05 22.5 1.0 3.2 1 1 3 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|116754911|ref|YP_844029.1| - 3.2e-09 35.8 8.1 0.26 11.1 0.0 5.7 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|116754911|ref|YP_844029.1| - 1.2e-08 34.8 14.9 0.1 13.0 0.1 5.9 6 0 0 6 6 6 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|116754911|ref|YP_844029.1| - 2.4e-07 30.5 5.0 0.1 12.5 0.0 3.6 3 0 0 3 3 3 2 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|116754911|ref|YP_844029.1| - 5.9e-07 28.6 0.4 0.0085 14.9 0.0 3.0 1 1 1 3 3 3 2 NMDA receptor-regulated protein 1 PPTA PF01239.17 gi|116754911|ref|YP_844029.1| - 2.3e-05 23.5 2.9 0.91 8.9 0.1 4.1 4 0 0 4 4 4 2 Protein prenyltransferase alpha subunit repeat Coatomer_E PF04733.9 gi|116754911|ref|YP_844029.1| - 5e-05 22.6 2.9 0.078 12.1 0.0 2.9 1 1 2 3 3 3 2 Coatomer epsilon subunit TPR_10 PF13374.1 gi|116754911|ref|YP_844029.1| - 7.3e-05 22.5 13.4 0.036 13.9 1.0 5.0 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|116754911|ref|YP_844029.1| - 0.00087 19.2 5.5 0.28 11.1 0.2 3.2 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_3 PF07720.7 gi|116754911|ref|YP_844029.1| - 0.0018 18.0 2.4 0.87 9.4 0.4 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|116754911|ref|YP_844029.1| - 0.002 18.3 3.2 0.2 11.8 0.1 3.1 2 1 0 3 3 3 1 Alkyl sulfatase dimerisation BTAD PF03704.12 gi|116754911|ref|YP_844029.1| - 0.01 16.1 4.1 2.6 8.3 0.3 2.9 2 1 0 2 2 2 0 Bacterial transcriptional activator domain DUF3856 PF12968.2 gi|116754911|ref|YP_844029.1| - 0.011 15.5 3.6 1.3 8.8 0.2 4.2 1 1 1 3 3 3 0 Domain of Unknown Function (DUF3856) FAT PF02259.18 gi|116754911|ref|YP_844029.1| - 0.014 14.3 3.6 0.89 8.4 0.4 3.1 2 1 0 2 2 2 0 FAT domain TPR_4 PF07721.9 gi|116754911|ref|YP_844029.1| - 0.015 15.7 0.6 42 4.9 0.0 4.8 5 0 0 5 5 5 0 Tetratricopeptide repeat Rapsyn_N PF10579.4 gi|116754911|ref|YP_844029.1| - 0.042 13.6 0.1 9.1 6.1 0.0 2.6 2 0 0 2 2 2 0 Rapsyn N-terminal myristoylation and linker region DUF627 PF04781.7 gi|116754911|ref|YP_844029.1| - 0.044 13.3 0.5 0.22 11.1 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF627) MIT PF04212.13 gi|116754911|ref|YP_844029.1| - 0.097 12.5 6.2 3.8 7.4 0.0 3.9 2 2 1 3 3 3 0 MIT (microtubule interacting and transport) domain TPP_enzyme_N PF02776.13 gi|116754912|ref|YP_844030.1| - 2.4e-11 43.4 0.0 2.9e-11 43.1 0.0 1.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|116754913|ref|YP_844031.1| - 1.3e-19 70.2 0.0 3.2e-19 69.0 0.0 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NTP_transf_3 PF12804.2 gi|116754913|ref|YP_844031.1| - 0.075 13.1 0.2 11 6.1 0.0 2.3 1 1 1 2 2 2 0 MobA-like NTP transferase domain DUF39 PF01837.11 gi|116754914|ref|YP_844032.1| - 9.2e-109 363.1 0.0 1e-108 362.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_10 PF13237.1 gi|116754914|ref|YP_844032.1| - 1.8e-05 24.4 8.4 4.9e-05 23.0 5.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|116754914|ref|YP_844032.1| - 0.00012 21.7 12.0 0.012 15.4 2.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|116754914|ref|YP_844032.1| - 0.00039 20.4 1.1 0.086 12.8 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|116754914|ref|YP_844032.1| - 0.0011 19.3 0.2 0.0011 19.3 0.1 3.0 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|116754914|ref|YP_844032.1| - 0.0019 17.7 12.8 0.0056 16.2 0.9 3.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116754914|ref|YP_844032.1| - 0.0023 18.3 9.7 0.043 14.2 7.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|116754914|ref|YP_844032.1| - 0.0093 16.5 0.3 0.0093 16.5 0.2 2.9 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|116754914|ref|YP_844032.1| - 0.037 13.9 1.4 0.037 13.9 1.0 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116754914|ref|YP_844032.1| - 0.1 12.4 10.7 0.32 10.8 0.9 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754914|ref|YP_844032.1| - 1.4 9.2 11.0 8.3 6.7 7.7 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754914|ref|YP_844032.1| - 5.7 7.3 10.6 2.6 8.4 1.1 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain NosD PF05048.8 gi|116754915|ref|YP_844033.1| - 2.7e-33 115.1 17.6 4.6e-33 114.3 12.2 1.4 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|116754915|ref|YP_844033.1| - 2.3e-15 56.6 20.2 2.3e-15 56.6 14.0 2.4 1 1 1 2 2 2 1 Right handed beta helix region ZU5 PF00791.15 gi|116754915|ref|YP_844033.1| - 3.4e-05 23.4 0.1 7.4e-05 22.3 0.1 1.5 1 0 0 1 1 1 1 ZU5 domain DUF2135 PF09906.4 gi|116754915|ref|YP_844033.1| - 0.023 14.6 0.5 0.067 13.1 0.4 1.9 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2135) BacA PF02673.13 gi|116754918|ref|YP_844036.1| - 5e-54 183.2 14.3 6.2e-54 182.9 9.9 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Orbi_NS3 PF01616.11 gi|116754918|ref|YP_844036.1| - 0.82 8.6 3.4 0.25 10.2 0.2 1.7 2 1 0 2 2 2 0 Orbivirus NS3 PrgI PF12666.2 gi|116754918|ref|YP_844036.1| - 6.7 6.9 12.1 5 7.3 0.1 3.6 3 1 0 3 3 3 0 PrgI family protein DUF161 PF02588.10 gi|116754918|ref|YP_844036.1| - 6.9 7.0 9.9 0.32 11.3 1.1 2.8 3 2 0 3 3 3 0 Uncharacterized BCR, YitT family COG1284 HSP20 PF00011.16 gi|116754920|ref|YP_844038.1| - 3.4e-18 65.3 0.6 4.7e-18 64.9 0.4 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|116754920|ref|YP_844038.1| - 7.8e-06 26.3 0.0 1.5e-05 25.4 0.0 1.5 1 1 0 1 1 1 1 CS domain PIH1 PF08190.7 gi|116754920|ref|YP_844038.1| - 0.00023 20.7 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 MAP65_ASE1 PF03999.7 gi|116754920|ref|YP_844038.1| - 0.017 13.7 0.0 0.018 13.6 0.0 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) GvpH PF05455.6 gi|116754920|ref|YP_844038.1| - 0.018 14.7 2.2 0.023 14.3 1.5 1.4 1 1 0 1 1 1 0 GvpH DHBP_synthase PF00926.14 gi|116754921|ref|YP_844039.1| - 5.2e-87 290.0 0.6 6.8e-87 289.7 0.4 1.2 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.15 gi|116754921|ref|YP_844039.1| - 3.2e-77 257.5 0.0 1.1e-76 255.8 0.0 1.8 2 0 0 2 2 2 1 GTP cyclohydrolase II HTH_3 PF01381.17 gi|116754922|ref|YP_844040.1| - 2.1e-07 30.6 0.1 5.2e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|116754922|ref|YP_844040.1| - 3.2e-06 27.0 0.1 6.2e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.11 gi|116754922|ref|YP_844040.1| - 4.2e-05 23.0 1.2 0.0002 20.8 0.0 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_26 PF13443.1 gi|116754922|ref|YP_844040.1| - 6.7e-05 23.0 0.0 0.00014 22.0 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain TrmB PF01978.14 gi|116754922|ref|YP_844040.1| - 0.039 13.6 0.1 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB XPG_I PF00867.13 gi|116754923|ref|YP_844041.1| - 4.2e-28 97.2 0.0 7e-28 96.5 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|116754923|ref|YP_844041.1| - 1.3e-16 60.6 0.0 2e-16 60.1 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|116754923|ref|YP_844041.1| - 6.1e-05 23.1 0.0 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|116754923|ref|YP_844041.1| - 0.08 12.8 0.0 0.39 10.6 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif Diphthamide_syn PF01866.12 gi|116754924|ref|YP_844042.1| - 1.5e-93 313.3 0.0 1.8e-93 313.1 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Pyridoxal_deC PF00282.14 gi|116754925|ref|YP_844043.1| - 7.6e-31 106.8 0.0 1.3e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|116754925|ref|YP_844043.1| - 2.7e-09 36.2 0.0 4.9e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|116754925|ref|YP_844043.1| - 1.6e-07 30.6 0.0 4.2e-06 25.9 0.0 2.1 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|116754925|ref|YP_844043.1| - 0.0028 16.8 0.0 0.003 16.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|116754925|ref|YP_844043.1| - 0.0055 15.7 0.0 0.011 14.7 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family PPDK_N PF01326.14 gi|116754926|ref|YP_844044.1| - 5.1e-106 354.4 0.2 7.8e-106 353.8 0.2 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|116754926|ref|YP_844044.1| - 1.3e-86 290.1 1.4 2e-86 289.5 0.3 1.7 2 0 0 2 2 2 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|116754926|ref|YP_844044.1| - 7.8e-27 92.6 1.7 2.1e-26 91.3 1.2 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|116754926|ref|YP_844044.1| - 4.6e-07 28.9 0.3 4.2e-05 22.5 0.1 2.6 2 1 0 2 2 2 2 HpcH/HpaI aldolase/citrate lyase family LysE PF01810.13 gi|116754927|ref|YP_844045.1| - 1.8e-24 86.0 10.0 1.8e-24 86.0 7.0 1.3 1 1 0 1 1 1 1 LysE type translocator DUF95 PF01944.12 gi|116754928|ref|YP_844046.1| - 4.3e-30 104.6 12.9 4.9e-30 104.4 8.9 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 tRNA-synt_2b PF00587.20 gi|116754929|ref|YP_844047.1| - 4.3e-18 65.4 0.1 8.3e-18 64.5 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|116754929|ref|YP_844047.1| - 5.1e-17 61.6 0.1 9.8e-17 60.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|116754929|ref|YP_844047.1| - 1.2e-11 44.2 0.0 3.2e-11 42.9 0.0 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal ATP-grasp_3 PF02655.9 gi|116754930|ref|YP_844048.1| - 3.4e-35 121.2 0.0 4.9e-35 120.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|116754930|ref|YP_844048.1| - 1.3e-06 28.2 0.0 1.1e-05 25.2 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|116754930|ref|YP_844048.1| - 0.0017 17.2 0.1 0.16 10.7 0.0 2.5 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Sec61_beta PF03911.11 gi|116754931|ref|YP_844049.1| - 7.3e-10 38.4 0.1 9.1e-10 38.1 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family FTR_C PF02741.10 gi|116754932|ref|YP_844050.1| - 7.7e-68 226.9 0.4 3e-67 225.0 0.2 1.8 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.13 gi|116754932|ref|YP_844050.1| - 1.7e-64 215.8 0.0 3e-64 215.0 0.0 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase IMP_cyclohyd PF07826.6 gi|116754933|ref|YP_844051.1| - 2.4e-58 196.7 0.0 2.8e-58 196.5 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein TPP_enzyme_C PF02775.16 gi|116754934|ref|YP_844052.1| - 3.3e-25 88.4 0.0 4.7e-25 87.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|116754935|ref|YP_844053.1| - 1e-67 228.0 0.1 1.4e-67 227.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|116754935|ref|YP_844053.1| - 4.5e-08 33.0 0.1 9.1e-08 32.0 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|116754936|ref|YP_844054.1| - 4.1e-12 45.1 16.9 1.3e-06 27.7 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|116754936|ref|YP_844054.1| - 3.7e-09 36.3 27.9 7.3e-07 28.9 10.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754936|ref|YP_844054.1| - 4.3e-09 36.0 22.9 1.1e-06 28.2 9.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|116754936|ref|YP_844054.1| - 7.5e-08 31.8 11.7 0.00042 20.0 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116754936|ref|YP_844054.1| - 2.6e-07 30.1 18.0 0.0004 20.1 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|116754936|ref|YP_844054.1| - 3.9e-07 30.3 13.7 1.3e-06 28.7 9.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754936|ref|YP_844054.1| - 5.2e-06 26.7 7.1 0.005 17.1 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|116754936|ref|YP_844054.1| - 8.2e-06 25.9 15.1 3.7e-05 23.8 10.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754936|ref|YP_844054.1| - 4.1e-05 24.2 14.9 0.001 19.7 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|116754936|ref|YP_844054.1| - 0.00035 20.6 16.7 0.068 13.5 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|116754936|ref|YP_844054.1| - 0.0018 18.2 14.0 0.12 12.4 2.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|116754936|ref|YP_844054.1| - 0.0052 17.1 11.8 0.21 12.0 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|116754936|ref|YP_844054.1| - 0.012 16.2 16.3 0.12 12.9 2.3 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|116754936|ref|YP_844054.1| - 0.077 13.5 21.4 0.8 10.4 4.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|116754936|ref|YP_844054.1| - 0.24 11.8 16.2 1.1 9.6 2.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain TNFR_c6 PF00020.13 gi|116754936|ref|YP_844054.1| - 0.55 10.3 7.3 0.32 11.1 0.4 2.4 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region POR PF01558.13 gi|116754937|ref|YP_844055.1| - 2.5e-37 128.4 0.3 2.9e-37 128.2 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase UPF0047 PF01894.12 gi|116754938|ref|YP_844056.1| - 4.8e-37 126.3 0.0 6.1e-37 126.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF1326 PF07040.6 gi|116754938|ref|YP_844056.1| - 0.0079 15.9 0.0 0.42 10.3 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1326) TFIIE_alpha PF02002.12 gi|116754939|ref|YP_844057.1| - 3.8e-21 74.5 1.6 7.7e-21 73.5 0.4 1.8 2 0 0 2 2 2 1 TFIIE alpha subunit Rad50_zn_hook PF04423.9 gi|116754939|ref|YP_844057.1| - 0.00064 19.1 0.4 0.013 14.9 0.0 2.3 2 0 0 2 2 2 1 Rad50 zinc hook motif Rep_fac-A_C PF08646.5 gi|116754939|ref|YP_844057.1| - 0.00076 19.2 0.2 0.0012 18.5 0.2 1.3 1 0 0 1 1 1 1 Replication factor-A C terminal domain HTH_9 PF08221.6 gi|116754939|ref|YP_844057.1| - 0.0055 16.5 0.0 0.0097 15.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TniQ PF06527.6 gi|116754939|ref|YP_844057.1| - 0.0061 16.7 0.0 0.0091 16.2 0.0 1.3 1 0 0 1 1 1 1 TniQ GntR PF00392.16 gi|116754939|ref|YP_844057.1| - 0.0065 15.8 0.6 0.013 14.9 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family TF_Zn_Ribbon PF08271.7 gi|116754939|ref|YP_844057.1| - 0.011 15.0 1.6 0.026 13.8 1.1 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|116754939|ref|YP_844057.1| - 0.038 13.9 0.1 0.099 12.6 0.1 1.7 1 0 0 1 1 1 0 zinc-finger RepL PF05732.6 gi|116754939|ref|YP_844057.1| - 0.071 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) zf-Di19 PF05605.7 gi|116754939|ref|YP_844057.1| - 0.081 13.0 0.1 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding HTH_36 PF13730.1 gi|116754939|ref|YP_844057.1| - 0.089 12.9 0.1 0.23 11.5 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|116754939|ref|YP_844057.1| - 0.094 12.1 0.2 0.81 9.1 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 DUF2296 PF10058.4 gi|116754939|ref|YP_844057.1| - 0.11 12.2 1.3 0.21 11.3 0.9 1.5 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) FAD-oxidase_C PF02913.14 gi|116754940|ref|YP_844058.1| - 4.1e-53 180.2 0.0 5.2e-53 179.9 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|116754940|ref|YP_844058.1| - 5.4e-49 165.2 0.8 1e-48 164.3 0.2 1.8 2 0 0 2 2 2 1 FAD binding domain CCG PF02754.11 gi|116754941|ref|YP_844059.1| - 2.1e-29 101.3 2.0 7.2e-15 54.7 0.1 2.6 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|116754941|ref|YP_844059.1| - 3.5e-11 42.9 4.2 3.5e-11 42.9 2.9 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|116754941|ref|YP_844059.1| - 2.5e-10 40.5 2.1 2.5e-10 40.5 1.4 3.2 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|116754941|ref|YP_844059.1| - 9.1e-08 32.3 3.3 9.1e-08 32.3 2.3 3.3 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|116754941|ref|YP_844059.1| - 5.4e-05 22.9 18.1 0.00018 21.2 7.9 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|116754941|ref|YP_844059.1| - 0.0005 20.7 9.9 0.051 14.3 0.2 3.4 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|116754941|ref|YP_844059.1| - 0.0022 17.8 3.6 0.0022 17.8 2.5 4.5 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|116754941|ref|YP_844059.1| - 0.0025 18.0 2.0 0.0025 18.0 1.4 4.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|116754941|ref|YP_844059.1| - 0.0034 17.7 17.1 0.029 14.7 0.2 3.6 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|116754941|ref|YP_844059.1| - 0.019 14.5 5.2 0.019 14.5 3.6 3.4 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|116754941|ref|YP_844059.1| - 0.02 14.7 2.4 0.02 14.7 1.6 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|116754941|ref|YP_844059.1| - 0.044 14.0 23.9 0.055 13.7 9.7 3.9 3 1 2 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|116754941|ref|YP_844059.1| - 0.071 13.5 13.4 0.57 10.6 1.4 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|116754941|ref|YP_844059.1| - 0.19 12.3 7.6 2.7 8.6 0.5 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|116754941|ref|YP_844059.1| - 1.6 9.4 31.1 0.19 12.3 3.4 4.6 4 0 0 4 4 4 0 4Fe-4S binding domain SIMPL PF04402.9 gi|116754942|ref|YP_844060.1| - 8.4e-33 114.0 3.0 1.2e-32 113.5 2.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF4140 PF13600.1 gi|116754942|ref|YP_844060.1| - 0.012 16.0 2.4 1.1 9.7 0.0 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) MtrH PF02007.13 gi|116754943|ref|YP_844061.1| - 6.9e-105 350.2 0.0 7.8e-105 350.0 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit CdhD PF03599.11 gi|116754943|ref|YP_844061.1| - 0.14 10.5 0.0 0.29 9.5 0.0 1.5 2 0 0 2 2 2 0 CO dehydrogenase/acetyl-CoA synthase delta subunit Alba PF01918.16 gi|116754944|ref|YP_844062.1| - 1.7e-16 59.5 0.5 2.2e-16 59.1 0.4 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|116754944|ref|YP_844062.1| - 0.026 14.1 0.1 0.033 13.8 0.1 1.3 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Formyl_trans_N PF00551.14 gi|116754945|ref|YP_844063.1| - 3.2e-51 173.4 0.0 3.7e-51 173.2 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase HIT PF01230.18 gi|116754946|ref|YP_844064.1| - 8.5e-14 51.8 0.0 1.3e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|116754946|ref|YP_844064.1| - 1e-05 25.7 0.0 1.4e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|116754946|ref|YP_844064.1| - 0.00036 20.1 0.0 0.00053 19.6 0.0 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 TGT PF01702.13 gi|116754948|ref|YP_844066.1| - 2.2e-52 177.7 0.0 2.9e-52 177.3 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|116754949|ref|YP_844067.1| - 4.5e-12 45.5 0.0 9.6e-12 44.4 0.0 1.5 1 0 0 1 1 1 1 PUA domain TGT PF01702.13 gi|116754949|ref|YP_844067.1| - 4.9e-10 39.0 0.1 6.7e-09 35.3 0.0 2.3 1 1 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|116754949|ref|YP_844067.1| - 2.2e-05 24.1 0.4 6.6e-05 22.6 0.3 1.8 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TrkA_C PF02080.16 gi|116754949|ref|YP_844067.1| - 0.084 12.4 0.4 0.31 10.6 0.3 2.0 1 0 0 1 1 1 0 TrkA-C domain HD PF01966.17 gi|116754951|ref|YP_844069.1| - 5.6e-12 45.7 1.3 1.3e-11 44.5 0.9 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|116754951|ref|YP_844069.1| - 0.0034 16.6 0.0 0.0076 15.5 0.0 1.5 1 0 0 1 1 1 1 HDOD domain Y_phosphatase3C PF13348.1 gi|116754951|ref|YP_844069.1| - 0.023 14.8 1.9 41 4.3 0.0 4.0 4 0 0 4 4 4 0 Tyrosine phosphatase family C-terminal region CENP-Q PF13094.1 gi|116754952|ref|YP_844070.1| - 0.013 15.5 0.3 0.018 15.0 0.2 1.3 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit IncA PF04156.9 gi|116754952|ref|YP_844070.1| - 0.1 12.2 1.1 0.12 12.0 0.7 1.1 1 0 0 1 1 1 0 IncA protein Cep57_MT_bd PF06657.8 gi|116754952|ref|YP_844070.1| - 0.19 11.7 2.3 0.5 10.3 1.6 1.8 1 1 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 DUF4140 PF13600.1 gi|116754952|ref|YP_844070.1| - 0.22 11.9 1.3 0.44 11.0 0.2 1.8 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DASH_Dam1 PF08653.5 gi|116754952|ref|YP_844070.1| - 0.23 11.2 3.1 5.4 6.8 0.1 2.8 2 1 1 3 3 3 0 DASH complex subunit Dam1 FmdE PF02663.9 gi|116754953|ref|YP_844071.1| - 5e-39 133.1 0.0 6.1e-39 132.9 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|116754953|ref|YP_844071.1| - 6.6e-08 32.1 1.7 6.6e-08 32.1 1.2 1.7 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.17 gi|116754953|ref|YP_844071.1| - 0.0048 16.9 0.3 0.0094 15.9 0.2 1.4 1 0 0 1 1 1 1 LIM domain Brix PF04427.13 gi|116754953|ref|YP_844071.1| - 0.034 13.8 0.0 0.054 13.1 0.0 1.4 1 1 0 1 1 1 0 Brix domain Zn-ribbon_8 PF09723.5 gi|116754953|ref|YP_844071.1| - 0.049 13.5 1.4 0.11 12.5 1.0 1.5 1 0 0 1 1 1 0 Zinc ribbon domain XPA_N PF01286.13 gi|116754953|ref|YP_844071.1| - 1.9 8.2 4.2 2.6 7.7 0.5 2.3 2 0 0 2 2 2 0 XPA protein N-terminal ATP-grasp_3 PF02655.9 gi|116754954|ref|YP_844072.1| - 3.8e-39 134.1 0.0 5e-39 133.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|116754954|ref|YP_844072.1| - 1e-08 35.1 0.0 8.9e-08 32.0 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|116754954|ref|YP_844072.1| - 6.9e-08 31.5 0.1 5.2e-06 25.4 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|116754954|ref|YP_844072.1| - 8.4e-05 21.9 0.1 0.00048 19.4 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|116754954|ref|YP_844072.1| - 0.026 13.8 0.0 0.046 13.0 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|116754954|ref|YP_844072.1| - 0.035 13.5 0.0 0.052 12.9 0.0 1.3 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|116754954|ref|YP_844072.1| - 0.07 12.5 0.0 0.18 11.2 0.0 1.6 2 0 0 2 2 2 0 RimK-like ATP-grasp domain Trm56 PF01994.11 gi|116754955|ref|YP_844073.1| - 3.2e-50 168.9 0.0 3.9e-50 168.6 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Sulfolobus_pRN PF05584.6 gi|116754956|ref|YP_844074.1| - 0.023 14.6 0.1 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Penicillinase_R PF03965.11 gi|116754956|ref|YP_844074.1| - 0.025 14.6 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor PaaX PF07848.7 gi|116754956|ref|YP_844074.1| - 0.074 13.0 0.1 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein ABC2_membrane_3 PF12698.2 gi|116754957|ref|YP_844075.1| - 2.6e-41 141.8 17.6 2.9e-41 141.6 12.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|116754957|ref|YP_844075.1| - 2.7e-30 105.1 17.8 2.7e-30 105.1 12.3 2.4 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|116754957|ref|YP_844075.1| - 2.3e-12 46.3 9.9 4.7e-12 45.3 6.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|116754957|ref|YP_844075.1| - 3.8e-05 22.9 4.0 9.3e-05 21.7 2.8 1.6 1 0 0 1 1 1 1 CcmB protein DUF4621 PF15414.1 gi|116754957|ref|YP_844075.1| - 0.022 13.4 0.0 0.033 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4621) ABC_tran PF00005.22 gi|116754958|ref|YP_844076.1| - 3e-30 105.3 0.0 4.6e-30 104.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|116754958|ref|YP_844076.1| - 2.6e-15 57.1 0.1 1e-07 32.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|116754958|ref|YP_844076.1| - 4.2e-05 23.5 0.0 0.00012 22.1 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|116754958|ref|YP_844076.1| - 5.2e-05 22.7 0.0 9.9e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|116754958|ref|YP_844076.1| - 0.0001 21.6 0.0 0.024 13.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|116754958|ref|YP_844076.1| - 0.00014 21.0 0.0 0.0098 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|116754958|ref|YP_844076.1| - 0.00026 21.3 0.0 0.00052 20.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|116754958|ref|YP_844076.1| - 0.0099 15.5 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|116754958|ref|YP_844076.1| - 0.012 15.7 0.0 0.032 14.4 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|116754958|ref|YP_844076.1| - 0.014 14.7 0.0 0.028 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|116754958|ref|YP_844076.1| - 0.021 14.7 0.0 0.038 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|116754958|ref|YP_844076.1| - 0.021 14.2 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Arch_ATPase PF01637.13 gi|116754958|ref|YP_844076.1| - 0.029 14.0 0.0 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA_30 PF13604.1 gi|116754958|ref|YP_844076.1| - 0.035 13.6 0.0 0.092 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|116754958|ref|YP_844076.1| - 0.039 13.5 0.0 0.085 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|116754958|ref|YP_844076.1| - 0.052 13.3 0.1 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain ATP-synt_ab PF00006.20 gi|116754958|ref|YP_844076.1| - 0.052 13.0 0.0 0.09 12.2 0.0 1.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.10 gi|116754958|ref|YP_844076.1| - 0.062 13.0 0.0 0.12 12.1 0.0 1.6 2 0 0 2 2 1 0 NTPase ATP_bind_1 PF03029.12 gi|116754958|ref|YP_844076.1| - 0.064 12.7 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein UPF0079 PF02367.12 gi|116754958|ref|YP_844076.1| - 0.065 12.8 0.1 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_17 PF13207.1 gi|116754958|ref|YP_844076.1| - 0.074 13.8 0.4 0.21 12.4 0.1 1.9 2 1 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|116754958|ref|YP_844076.1| - 0.1 11.6 0.2 0.47 9.5 0.0 2.0 3 0 0 3 3 3 0 KaiC MobB PF03205.9 gi|116754958|ref|YP_844076.1| - 0.13 11.9 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|116754958|ref|YP_844076.1| - 0.14 11.5 0.1 4.1 6.7 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein CARDB PF07705.6 gi|116754959|ref|YP_844077.1| - 6.2e-07 29.3 0.1 0.002 18.1 0.0 2.5 2 1 0 2 2 2 2 CARDB NPCBM_assoc PF10633.4 gi|116754959|ref|YP_844077.1| - 1.2e-06 28.4 0.1 1.4e-05 25.0 0.0 2.6 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|116754959|ref|YP_844077.1| - 7.8e-05 22.6 1.8 0.28 11.2 0.1 2.6 2 0 0 2 2 2 2 Domain of unknown function DUF11 Helicase_C_2 PF13307.1 gi|116754960|ref|YP_844078.1| - 7.1e-33 113.9 0.0 1.7e-32 112.7 0.0 1.6 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|116754960|ref|YP_844078.1| - 4.5e-17 62.0 0.0 1.2e-16 60.5 0.0 1.8 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|116754960|ref|YP_844078.1| - 1.7e-06 27.9 0.0 0.00092 19.0 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|116754960|ref|YP_844078.1| - 0.00016 21.2 0.1 0.047 13.1 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|116754960|ref|YP_844078.1| - 0.00058 19.5 0.3 0.0027 17.4 0.1 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|116754960|ref|YP_844078.1| - 0.027 14.6 0.0 10 6.2 0.0 3.2 3 0 0 3 3 3 0 AAA domain Polysacc_synt PF01943.12 gi|116754961|ref|YP_844079.1| - 4.8e-29 101.4 32.7 4.8e-29 101.4 22.7 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|116754961|ref|YP_844079.1| - 2.2e-19 69.9 30.6 2.2e-19 69.9 21.2 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|116754961|ref|YP_844079.1| - 9.7e-18 64.3 52.4 5.7e-14 52.1 18.5 3.9 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|116754961|ref|YP_844079.1| - 5.7e-09 34.9 21.3 5.7e-09 34.9 14.7 3.4 1 1 2 3 3 3 3 MviN-like protein MatE PF01554.13 gi|116754961|ref|YP_844079.1| - 9.9e-06 25.2 11.6 9.9e-06 25.2 8.0 3.7 3 1 0 3 3 3 1 MatE Glycos_transf_2 PF00535.21 gi|116754962|ref|YP_844080.1| - 8.6e-20 71.0 0.0 1.5e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|116754962|ref|YP_844080.1| - 2.7e-06 27.3 0.0 5.8e-06 26.2 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|116754962|ref|YP_844080.1| - 0.036 13.1 0.0 0.05 12.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|116754962|ref|YP_844080.1| - 0.089 13.1 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|116754963|ref|YP_844081.1| - 2.9e-30 104.9 0.2 6.4e-30 103.8 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|116754963|ref|YP_844081.1| - 4e-13 49.6 0.0 7.9e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|116754963|ref|YP_844081.1| - 4.2e-12 46.1 0.0 1.2e-11 44.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|116754963|ref|YP_844081.1| - 2.6e-08 34.1 0.0 1.1e-06 28.8 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|116754963|ref|YP_844081.1| - 8.8e-08 32.0 1.6 2.3e-07 30.7 0.2 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|116754963|ref|YP_844081.1| - 1.8e-07 31.0 0.0 2.9e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 B56 PF01603.15 gi|116754963|ref|YP_844081.1| - 0.042 12.4 0.3 0.31 9.6 0.1 2.0 2 0 0 2 2 2 0 Protein phosphatase 2A regulatory B subunit (B56 family) Glycos_transf_1 PF00534.15 gi|116754964|ref|YP_844082.1| - 3e-26 91.8 0.0 6.3e-26 90.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|116754964|ref|YP_844082.1| - 1.7e-16 60.5 0.0 4.5e-16 59.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|116754964|ref|YP_844082.1| - 6.9e-09 35.6 0.0 1.2e-08 34.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|116754964|ref|YP_844082.1| - 0.00017 21.7 0.0 0.00034 20.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|116754964|ref|YP_844082.1| - 0.00082 19.5 0.1 0.002 18.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Exostosin PF03016.10 gi|116754964|ref|YP_844082.1| - 0.088 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Exostosin family Glyco_trans_4_3 PF12000.3 gi|116754964|ref|YP_844082.1| - 0.14 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Gkycosyl transferase family 4 group Glyco_trans_1_4 PF13692.1 gi|116754965|ref|YP_844083.1| - 4.6e-12 46.2 0.0 9.7e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|116754965|ref|YP_844083.1| - 1.1e-07 32.1 0.2 4.4e-07 30.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|116754965|ref|YP_844083.1| - 2.3e-06 27.1 0.0 4.2e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|116754965|ref|YP_844083.1| - 0.00027 20.7 0.0 0.0061 16.3 0.0 2.2 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.1 gi|116754966|ref|YP_844084.1| - 7.4e-17 61.7 0.0 1.4e-16 60.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|116754966|ref|YP_844084.1| - 3e-12 46.2 0.0 4.6e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|116754966|ref|YP_844084.1| - 8.4e-10 39.0 0.0 1.8e-09 37.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|116754966|ref|YP_844084.1| - 1.3e-09 38.1 0.0 3.2e-09 36.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|116754966|ref|YP_844084.1| - 6.6e-05 22.6 0.0 0.0001 22.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 DUF4350 PF14258.1 gi|116754966|ref|YP_844084.1| - 0.013 15.6 0.1 0.032 14.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) Hexapep PF00132.19 gi|116754967|ref|YP_844085.1| - 1.8e-21 74.6 15.8 3.7e-07 29.3 0.2 5.1 3 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.18 gi|116754967|ref|YP_844085.1| - 4.7e-18 65.3 0.0 6.1e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|116754967|ref|YP_844085.1| - 1.8e-07 31.3 0.1 3.4e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|116754967|ref|YP_844085.1| - 1.8e-05 24.1 0.8 1.8e-05 24.1 0.6 5.3 4 1 1 5 5 5 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|116754967|ref|YP_844085.1| - 0.6 8.6 5.9 1.7 7.0 0.4 2.7 1 1 1 2 2 2 0 L-fucokinase SIS PF01380.17 gi|116754968|ref|YP_844086.1| - 9.2e-45 151.4 0.1 3.1e-25 88.2 0.0 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|116754968|ref|YP_844086.1| - 2e-24 86.0 0.0 4.4e-24 84.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|116754968|ref|YP_844086.1| - 2.2e-20 72.7 0.1 4.8e-16 58.4 0.0 2.4 2 1 0 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|116754968|ref|YP_844086.1| - 1.9e-18 66.3 0.0 3.9e-18 65.3 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.1 gi|116754968|ref|YP_844086.1| - 5.7e-05 22.8 0.1 0.00064 19.4 0.0 2.4 1 1 1 2 2 2 1 SIS domain GATase_4 PF13230.1 gi|116754968|ref|YP_844086.1| - 0.0013 17.5 0.0 0.0021 16.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II TroA PF01297.12 gi|116754969|ref|YP_844087.1| - 3e-31 108.5 0.1 2.5e-30 105.6 0.1 1.9 1 1 0 1 1 1 1 Periplasmic solute binding protein family HAD PF12710.2 gi|116754970|ref|YP_844088.1| - 1.9e-20 73.8 0.4 3.4e-20 73.0 0.1 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase ACT PF01842.20 gi|116754970|ref|YP_844088.1| - 2e-15 55.8 3.4 1.2e-06 27.9 0.0 2.6 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|116754970|ref|YP_844088.1| - 1.2e-13 50.6 0.2 5.9e-10 38.7 0.0 2.5 2 0 0 2 2 2 2 ACT domain Hydrolase PF00702.21 gi|116754970|ref|YP_844088.1| - 9.3e-13 49.0 0.7 3.4e-12 47.2 0.4 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|116754970|ref|YP_844088.1| - 9e-12 45.0 0.4 5.3e-10 39.2 0.3 2.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|116754970|ref|YP_844088.1| - 4.7e-11 43.2 0.0 1.6e-10 41.5 0.0 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|116754970|ref|YP_844088.1| - 1.6e-08 34.0 1.3 6.7e-06 25.4 0.0 2.5 3 0 0 3 3 3 2 Putative Phosphatase ACT_4 PF13291.1 gi|116754970|ref|YP_844088.1| - 3.4e-08 33.6 0.4 0.021 15.1 0.1 3.2 3 0 0 3 3 3 2 ACT domain FliG_M PF14841.1 gi|116754970|ref|YP_844088.1| - 0.0021 18.0 0.1 0.83 9.7 0.0 2.8 2 1 1 3 3 3 1 FliG middle domain S6PP PF05116.8 gi|116754970|ref|YP_844088.1| - 0.11 11.7 0.1 0.77 9.0 0.0 2.0 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Rho_N PF07498.7 gi|116754970|ref|YP_844088.1| - 0.16 11.7 0.7 1.7 8.4 0.0 2.8 3 0 0 3 3 3 0 Rho termination factor, N-terminal domain TrmB PF01978.14 gi|116754971|ref|YP_844089.1| - 6.1e-20 70.6 0.0 1.7e-19 69.2 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|116754971|ref|YP_844089.1| - 0.00015 21.3 0.0 0.00036 20.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|116754971|ref|YP_844089.1| - 0.0018 18.5 0.0 0.014 15.6 0.0 2.4 2 1 1 3 3 3 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|116754971|ref|YP_844089.1| - 0.017 14.7 0.0 0.05 13.2 0.0 1.8 1 0 0 1 1 1 0 MarR family PadR PF03551.9 gi|116754971|ref|YP_844089.1| - 0.055 13.2 0.1 8.8 6.1 0.0 2.8 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family MarR PF01047.17 gi|116754971|ref|YP_844089.1| - 0.1 12.3 0.0 0.24 11.1 0.0 1.7 1 0 0 1 1 1 0 MarR family GntR PF00392.16 gi|116754971|ref|YP_844089.1| - 0.11 11.9 0.0 0.57 9.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Radical_SAM PF04055.16 gi|116754972|ref|YP_844090.1| - 7.2e-18 65.2 0.5 5.5e-17 62.4 0.0 2.2 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|116754972|ref|YP_844090.1| - 7e-10 38.9 0.9 3.8e-07 30.1 0.0 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|116754972|ref|YP_844090.1| - 1.1e-07 32.0 0.2 4.1e-05 23.7 0.0 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|116754972|ref|YP_844090.1| - 0.068 12.4 0.0 0.35 10.1 0.0 2.1 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Hpr_kinase_C PF07475.7 gi|116754973|ref|YP_844091.1| - 3.3e-06 26.5 0.3 5e-05 22.6 0.1 2.1 2 0 0 2 2 2 1 HPr Serine kinase C-terminal domain PEPCK_ATP PF01293.15 gi|116754973|ref|YP_844091.1| - 4.6e-05 22.1 0.0 7.7e-05 21.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_28 PF13521.1 gi|116754973|ref|YP_844091.1| - 0.0091 15.9 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|116754973|ref|YP_844091.1| - 0.019 14.8 0.0 0.053 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|116754973|ref|YP_844091.1| - 0.035 14.9 1.4 0.061 14.1 0.5 1.8 2 1 0 2 2 2 0 AAA domain Nanovirus_C8 PF05629.6 gi|116754973|ref|YP_844091.1| - 0.05 13.4 0.1 0.095 12.4 0.1 1.4 1 0 0 1 1 1 0 Nanovirus component 8 (C8) protein AAA_29 PF13555.1 gi|116754973|ref|YP_844091.1| - 0.05 13.1 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|116754973|ref|YP_844091.1| - 0.088 12.5 0.2 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|116754973|ref|YP_844091.1| - 0.12 12.7 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|116754973|ref|YP_844091.1| - 0.15 10.6 0.0 0.29 9.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain eIF-5a PF01287.15 gi|116754974|ref|YP_844092.1| - 1.4e-12 47.3 0.4 2.2e-12 46.7 0.3 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|116754974|ref|YP_844092.1| - 1.8e-05 24.4 0.0 3.6e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain DUF1931 PF09123.6 gi|116754974|ref|YP_844092.1| - 0.12 12.2 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) PAS_9 PF13426.1 gi|116754975|ref|YP_844093.1| - 2.3e-07 31.1 0.0 3.9e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|116754975|ref|YP_844093.1| - 9.7e-07 28.4 0.0 2.2e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|116754975|ref|YP_844093.1| - 1.7e-05 24.8 0.0 2.8e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|116754975|ref|YP_844093.1| - 3.2e-05 23.6 0.0 0.0004 20.1 0.0 2.4 1 1 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|116754975|ref|YP_844093.1| - 0.0022 17.9 0.0 0.013 15.4 0.0 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|116754975|ref|YP_844093.1| - 0.097 12.6 0.0 0.29 11.1 0.0 2.0 1 1 1 2 2 2 0 PAS fold TRP PF06011.7 gi|116754976|ref|YP_844094.1| - 0.012 14.2 1.2 0.013 14.0 0.8 1.0 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel DUF4234 PF14018.1 gi|116754976|ref|YP_844094.1| - 0.022 14.5 1.7 0.034 13.8 1.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4234) Ceramidase PF05875.7 gi|116754976|ref|YP_844094.1| - 0.077 12.1 1.2 0.097 11.7 0.9 1.2 1 0 0 1 1 1 0 Ceramidase FA_desaturase PF00487.19 gi|116754976|ref|YP_844094.1| - 0.08 12.3 1.5 0.09 12.1 1.1 1.0 1 0 0 1 1 1 0 Fatty acid desaturase DUF3329 PF11808.3 gi|116754976|ref|YP_844094.1| - 0.15 12.1 3.4 0.2 11.7 2.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3329) VirB3 PF05101.8 gi|116754976|ref|YP_844094.1| - 0.24 11.4 1.8 0.29 11.1 1.2 1.2 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein Sec20 PF03908.8 gi|116754976|ref|YP_844094.1| - 2.5 7.8 5.8 0.15 11.7 0.3 1.7 1 1 1 2 2 2 0 Sec20 Pentapeptide_3 PF13576.1 gi|116754977|ref|YP_844095.1| - 1.1e-24 86.0 57.9 2.9e-08 33.4 3.8 7.5 2 1 7 9 9 9 8 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|116754977|ref|YP_844095.1| - 0.23 11.2 0.1 0.23 11.2 0.1 2.9 2 0 0 2 2 2 0 Ion channel BiPBP_C PF06832.7 gi|116754978|ref|YP_844096.1| - 1.2e-52 175.7 0.0 0.0029 17.4 0.0 12.0 11 0 0 11 11 11 11 Penicillin-Binding Protein C-terminus Family SprB PF13573.1 gi|116754978|ref|YP_844096.1| - 1.4e-42 142.9 85.9 0.00052 19.5 0.2 15.3 15 0 0 15 15 14 11 SprB repeat I-set PF07679.11 gi|116754978|ref|YP_844096.1| - 2.7e-35 120.0 3.2 0.45 10.3 0.0 14.2 14 0 0 14 14 14 11 Immunoglobulin I-set domain DUF11 PF01345.13 gi|116754978|ref|YP_844096.1| - 1.1e-32 111.8 37.1 9.4e-15 54.4 0.8 10.1 8 0 0 8 8 8 5 Domain of unknown function DUF11 Ig_2 PF13895.1 gi|116754978|ref|YP_844096.1| - 1.5e-31 108.3 66.4 0.01 15.9 0.1 12.5 2 1 10 12 12 12 11 Immunoglobulin domain C2-set_2 PF08205.7 gi|116754978|ref|YP_844096.1| - 1.5e-18 66.4 25.4 0.62 9.9 0.0 11.4 11 0 0 11 11 11 8 CD80-like C2-set immunoglobulin domain Ig_3 PF13927.1 gi|116754978|ref|YP_844096.1| - 1e-17 64.3 83.3 0.34 11.4 0.2 15.0 15 0 0 15 15 13 11 Immunoglobulin domain Cna_B PF05738.8 gi|116754978|ref|YP_844096.1| - 1.8e-07 30.7 0.7 1.8e-07 30.7 0.5 9.2 15 1 0 15 15 13 2 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|116754978|ref|YP_844096.1| - 3.6e-07 30.1 0.1 3.6e-07 30.1 0.1 12.7 16 0 0 16 16 14 1 Carboxypeptidase regulatory-like domain ig PF00047.20 gi|116754978|ref|YP_844096.1| - 2.3e-05 24.4 29.3 54 4.0 0.1 12.3 12 0 0 12 12 12 0 Immunoglobulin domain TRAP_beta PF05753.9 gi|116754978|ref|YP_844096.1| - 0.0011 18.1 1.2 2.3 7.3 0.0 4.3 4 0 0 4 4 4 1 Translocon-associated protein beta (TRAPB) DUF2012 PF09430.5 gi|116754978|ref|YP_844096.1| - 0.0081 15.9 0.0 0.028 14.2 0.0 1.9 2 0 0 2 2 1 1 Protein of unknown function (DUF2012) DUF4452 PF14618.1 gi|116754978|ref|YP_844096.1| - 0.24 11.2 8.2 40 3.9 0.1 4.9 4 0 0 4 4 4 0 Domain of unknown function (DUF4452) DUF2393 PF09624.5 gi|116754978|ref|YP_844096.1| - 1.3 8.5 7.1 10 5.6 0.1 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2393) Hexapep PF00132.19 gi|116754979|ref|YP_844097.1| - 2.2e-12 45.8 8.7 0.00063 19.1 1.2 4.0 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|116754979|ref|YP_844097.1| - 0.0095 15.4 3.8 0.23 11.0 0.3 2.9 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase UPF0104 PF03706.8 gi|116754980|ref|YP_844098.1| - 3.2e-37 128.4 31.9 4.7e-37 127.8 22.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) GCS2 PF04107.8 gi|116754981|ref|YP_844099.1| - 4.3e-45 154.0 0.0 6.2e-45 153.5 0.0 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) FCD PF07729.7 gi|116754981|ref|YP_844099.1| - 0.11 12.8 1.1 14 5.9 0.0 2.7 2 1 0 2 2 2 0 FCD domain CxxCxxCC PF03692.10 gi|116754982|ref|YP_844100.1| - 3e-10 40.4 0.2 5.8e-10 39.5 0.1 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.3 gi|116754982|ref|YP_844100.1| - 0.025 14.0 0.4 0.042 13.3 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3109) RimK PF08443.6 gi|116754983|ref|YP_844101.1| - 2.1e-16 59.9 0.0 4.2e-16 58.9 0.0 1.5 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|116754983|ref|YP_844101.1| - 2.4e-10 40.4 0.0 5.4e-10 39.2 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|116754983|ref|YP_844101.1| - 1.6e-08 34.5 0.0 2.8e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|116754983|ref|YP_844101.1| - 0.00017 21.0 0.0 0.00025 20.4 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus DUF4343 PF14243.1 gi|116754983|ref|YP_844101.1| - 0.0002 21.1 0.0 0.00038 20.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4343) ATPgrasp_Ter PF15632.1 gi|116754983|ref|YP_844101.1| - 0.00061 18.6 0.0 0.35 9.5 0.0 2.6 2 1 1 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.1 gi|116754983|ref|YP_844101.1| - 0.03 13.4 0.0 1.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Moricin PF06451.6 gi|116754983|ref|YP_844101.1| - 0.043 13.3 0.3 0.089 12.3 0.2 1.4 1 0 0 1 1 1 0 Moricin RLAN PF14401.1 gi|116754984|ref|YP_844102.1| - 1.2e-32 112.5 0.1 1.5e-32 112.2 0.1 1.0 1 0 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain Thioredox_DsbH PF03190.10 gi|116754985|ref|YP_844103.1| - 7.3e-73 243.6 0.0 1.2e-72 243.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|116754985|ref|YP_844103.1| - 2.1e-14 53.3 0.0 3.6e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_88 PF07470.8 gi|116754985|ref|YP_844103.1| - 2.3e-06 26.9 0.2 5.9e-05 22.2 0.0 2.2 2 0 0 2 2 2 1 Glycosyl Hydrolase Family 88 C5-epim_C PF06662.8 gi|116754985|ref|YP_844103.1| - 0.0015 17.8 0.2 2.2 7.5 0.0 3.1 2 1 1 3 3 3 2 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_76 PF03663.9 gi|116754985|ref|YP_844103.1| - 0.0018 17.7 0.0 0.018 14.4 0.0 2.2 2 0 0 2 2 2 1 Glycosyl hydrolase family 76 Thioredoxin_2 PF13098.1 gi|116754985|ref|YP_844103.1| - 0.013 15.6 0.0 0.028 14.6 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain DUF1680 PF07944.7 gi|116754985|ref|YP_844103.1| - 0.046 11.9 0.0 0.13 10.5 0.0 1.6 2 0 0 2 2 2 0 Putative glycosyl hydrolase of unknown function (DUF1680) Prenyltrans_2 PF13249.1 gi|116754985|ref|YP_844103.1| - 0.067 13.5 0.0 5.5 7.4 0.0 3.0 3 0 0 3 3 3 0 Prenyltransferase-like Lar_restr_allev PF14354.1 gi|116754986|ref|YP_844104.1| - 0.022 15.0 0.2 0.045 14.0 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|116754986|ref|YP_844104.1| - 0.7 9.5 4.0 11 5.6 0.0 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|116754986|ref|YP_844104.1| - 0.77 9.4 3.3 14 5.4 0.0 2.8 3 0 0 3 3 3 0 zinc-ribbon domain PCMT PF01135.14 gi|116754987|ref|YP_844105.1| - 4.8e-76 254.9 0.0 5.4e-76 254.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|116754987|ref|YP_844105.1| - 2.3e-12 46.7 0.0 3e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|116754987|ref|YP_844105.1| - 3.6e-11 43.6 0.0 5.1e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|116754987|ref|YP_844105.1| - 1.8e-07 31.2 0.0 4.7e-07 29.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|116754987|ref|YP_844105.1| - 2.9e-06 26.5 0.0 3.7e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family GCD14 PF08704.5 gi|116754987|ref|YP_844105.1| - 4.3e-06 26.4 0.0 5.8e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_3 PF01596.12 gi|116754987|ref|YP_844105.1| - 2.6e-05 23.3 0.0 3.5e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Fibrillarin PF01269.12 gi|116754987|ref|YP_844105.1| - 3.7e-05 22.7 0.0 4.7e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin RrnaAD PF00398.15 gi|116754987|ref|YP_844105.1| - 3.9e-05 22.8 0.0 5.7e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|116754987|ref|YP_844105.1| - 9.4e-05 21.8 0.0 0.00017 21.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|116754987|ref|YP_844105.1| - 0.0036 16.4 0.0 0.0053 15.8 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|116754987|ref|YP_844105.1| - 0.0052 17.2 0.0 0.014 15.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|116754987|ref|YP_844105.1| - 0.031 13.9 0.0 0.054 13.2 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|116754987|ref|YP_844105.1| - 0.042 12.9 0.0 0.058 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_16 PF10294.4 gi|116754987|ref|YP_844105.1| - 0.052 13.0 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase DUF938 PF06080.7 gi|116754987|ref|YP_844105.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) CarboxypepD_reg PF13620.1 gi|116754988|ref|YP_844106.1| - 1.6e-10 40.9 2.9 1.6e-10 40.8 0.6 2.1 2 1 1 3 3 3 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|116754988|ref|YP_844106.1| - 0.00011 22.1 0.0 0.00019 21.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) DUF2012 PF09430.5 gi|116754988|ref|YP_844106.1| - 0.079 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) bPH_5 PF10882.3 gi|116754989|ref|YP_844107.1| - 0.015 15.0 0.1 0.19 11.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial PH domain TruB_N PF01509.13 gi|116754990|ref|YP_844108.1| - 6.2e-26 91.3 0.7 4.4e-16 59.3 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|116754990|ref|YP_844108.1| - 4.3e-20 71.1 0.2 7.9e-20 70.3 0.1 1.5 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.7 gi|116754990|ref|YP_844108.1| - 9.5e-17 60.6 0.0 1.9e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain Cytidylate_kin2 PF13189.1 gi|116754991|ref|YP_844109.1| - 5.9e-24 84.9 0.1 4.8e-22 78.7 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|116754991|ref|YP_844109.1| - 5.8e-13 49.2 0.1 1e-12 48.4 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|116754991|ref|YP_844109.1| - 1.9e-10 41.6 0.3 5.3e-10 40.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|116754991|ref|YP_844109.1| - 3e-06 26.7 0.1 4e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_33 PF13671.1 gi|116754991|ref|YP_844109.1| - 4.3e-06 26.6 0.2 0.0014 18.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain ADK PF00406.17 gi|116754991|ref|YP_844109.1| - 0.00018 21.3 0.1 0.0017 18.2 0.0 2.0 1 1 1 2 2 2 1 Adenylate kinase AAA_28 PF13521.1 gi|116754991|ref|YP_844109.1| - 0.00026 20.9 0.1 0.00073 19.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain SKI PF01202.17 gi|116754991|ref|YP_844109.1| - 0.0011 18.8 0.4 0.003 17.4 0.3 1.6 1 1 0 1 1 1 1 Shikimate kinase PRK PF00485.13 gi|116754991|ref|YP_844109.1| - 0.01 15.4 0.0 0.037 13.5 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_19 PF13245.1 gi|116754991|ref|YP_844109.1| - 0.024 14.3 0.0 0.045 13.5 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain CPT PF07931.7 gi|116754991|ref|YP_844109.1| - 0.054 13.1 0.1 0.16 11.5 0.0 1.9 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA PF00004.24 gi|116754991|ref|YP_844109.1| - 0.089 12.9 0.0 0.15 12.2 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CoaE PF01121.15 gi|116754991|ref|YP_844109.1| - 0.099 12.0 0.3 0.92 8.8 0.0 2.0 1 1 0 2 2 2 0 Dephospho-CoA kinase DUF106 PF01956.11 gi|116754992|ref|YP_844110.1| - 2e-43 147.8 3.9 2.5e-43 147.5 2.7 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 SecY PF00344.15 gi|116754993|ref|YP_844111.1| - 1.8e-101 339.5 23.2 2.2e-101 339.2 16.1 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|116754993|ref|YP_844111.1| - 2.1e-12 46.3 1.7 4.5e-12 45.2 1.2 1.6 1 0 0 1 1 1 1 Plug domain of Sec61p Ninjurin PF04923.7 gi|116754993|ref|YP_844111.1| - 1.3 8.8 4.3 7.6 6.3 0.1 2.7 2 0 0 2 2 2 0 Ninjurin Ribosomal_L18e PF00828.14 gi|116754994|ref|YP_844112.1| - 2e-22 79.9 5.2 4.6e-22 78.7 3.6 1.6 1 1 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|116754995|ref|YP_844113.1| - 3.8e-19 67.9 1.2 5.2e-19 67.5 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|116754996|ref|YP_844114.1| - 4.4e-25 87.2 3.5 7.1e-25 86.5 1.8 1.9 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|116754996|ref|YP_844114.1| - 3.4e-24 83.9 0.2 5.1e-24 83.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|116754997|ref|YP_844115.1| - 4.4e-27 94.6 0.1 5.8e-27 94.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|116754998|ref|YP_844116.1| - 2e-56 189.8 6.0 2.2e-56 189.7 4.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_12 PF08461.5 gi|116754998|ref|YP_844116.1| - 8.6 6.1 9.1 0.36 10.5 1.9 1.9 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain Ribosomal_L32e PF01655.13 gi|116754999|ref|YP_844117.1| - 2.2e-37 127.4 1.4 2.6e-37 127.2 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|116755000|ref|YP_844118.1| - 2.5e-30 104.7 2.5 1.5e-19 70.2 0.1 2.0 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.16 gi|116755000|ref|YP_844118.1| - 0.031 14.1 1.8 20 5.1 0.0 3.6 3 1 1 4 4 4 0 Hsp20/alpha crystallin family DUF1108 PF06531.6 gi|116755000|ref|YP_844118.1| - 0.097 12.8 0.2 0.38 10.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1108) Ribosomal_S8 PF00410.14 gi|116755001|ref|YP_844119.1| - 3.2e-26 91.6 0.0 4.1e-26 91.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|116755002|ref|YP_844120.1| - 1.5e-19 69.0 6.9 1.6e-19 68.9 4.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|116755002|ref|YP_844120.1| - 0.011 15.4 0.1 0.013 15.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) Ribosomal_L37ae PF01780.14 gi|116755002|ref|YP_844120.1| - 0.029 14.2 0.8 0.033 14.0 0.5 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-P11 PF03854.9 gi|116755002|ref|YP_844120.1| - 0.041 13.3 0.2 0.054 12.9 0.1 1.2 1 0 0 1 1 1 0 P-11 zinc finger DZR PF12773.2 gi|116755002|ref|YP_844120.1| - 0.11 12.3 0.9 0.17 11.7 0.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|116755002|ref|YP_844120.1| - 0.16 11.4 0.7 0.24 10.8 0.5 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain FYVE PF01363.16 gi|116755002|ref|YP_844120.1| - 0.47 10.3 3.1 0.61 10.0 2.2 1.3 1 1 0 1 1 1 0 FYVE zinc finger Rsm1 PF08600.5 gi|116755002|ref|YP_844120.1| - 3.5 7.5 4.7 8.8 6.2 1.3 2.0 1 1 1 2 2 2 0 Rsm1-like Ribosomal_L5_C PF00673.16 gi|116755003|ref|YP_844121.1| - 1.3e-25 88.8 0.0 2.1e-25 88.2 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|116755003|ref|YP_844121.1| - 2.8e-17 62.2 0.1 5e-17 61.4 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|116755004|ref|YP_844122.1| - 2.7e-23 81.4 0.1 7.1e-23 80.0 0.0 1.7 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.7 gi|116755004|ref|YP_844122.1| - 3.3e-10 39.6 3.6 5.2e-10 38.9 2.5 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|116755004|ref|YP_844122.1| - 1.1e-05 24.7 0.1 2.1e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|116755004|ref|YP_844122.1| - 0.00023 20.7 0.3 0.0008 19.0 0.0 2.1 2 0 0 2 2 2 1 KOW motif KOW PF00467.24 gi|116755005|ref|YP_844123.1| - 2.6e-07 30.0 1.5 5.6e-07 29.0 1.0 1.5 1 0 0 1 1 1 1 KOW motif DDE_Tnp_1_6 PF13751.1 gi|116755005|ref|YP_844123.1| - 0.079 12.9 0.6 0.11 12.5 0.4 1.2 1 0 0 1 1 1 0 Transposase DDE domain Ribosomal_L14 PF00238.14 gi|116755006|ref|YP_844124.1| - 3.4e-37 126.9 0.5 3.8e-37 126.7 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|116755007|ref|YP_844125.1| - 1.9e-27 95.1 3.3 2.3e-27 94.8 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|116755008|ref|YP_844126.1| - 1.8e-32 110.8 0.2 2e-32 110.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 SH3_5 PF08460.5 gi|116755008|ref|YP_844126.1| - 0.034 14.0 0.0 0.051 13.4 0.0 1.3 1 1 0 1 1 1 0 Bacterial SH3 domain Ribosomal_L29 PF00831.18 gi|116755009|ref|YP_844127.1| - 3.1e-20 71.5 2.2 3.5e-20 71.4 1.5 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein MRP-L47 PF06984.8 gi|116755009|ref|YP_844127.1| - 0.063 13.1 0.9 0.12 12.3 0.6 1.5 1 1 0 1 1 1 0 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) DUF1192 PF06698.6 gi|116755009|ref|YP_844127.1| - 1.3 8.8 6.9 0.2 11.5 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Ribosomal_S3_C PF00189.15 gi|116755010|ref|YP_844128.1| - 6.7e-16 58.2 0.0 1.1e-15 57.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|116755010|ref|YP_844128.1| - 4.4e-15 55.0 0.0 7.6e-15 54.2 0.0 1.4 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|116755010|ref|YP_844128.1| - 0.00099 18.7 0.2 0.0079 15.8 0.0 2.4 3 0 0 3 3 3 1 KH domain KH_4 PF13083.1 gi|116755010|ref|YP_844128.1| - 0.1 12.2 0.1 0.23 11.1 0.1 1.6 1 0 0 1 1 1 0 KH domain KH_3 PF13014.1 gi|116755010|ref|YP_844128.1| - 1.5 8.5 3.9 0.56 9.9 0.3 2.2 3 0 0 3 3 3 0 KH domain Ribosomal_L22 PF00237.14 gi|116755011|ref|YP_844129.1| - 3e-35 120.3 0.0 3.5e-35 120.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|116755012|ref|YP_844130.1| - 6.2e-24 83.4 0.2 9.1e-24 82.8 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.16 gi|116755012|ref|YP_844130.1| - 0.0051 15.5 0.0 0.0058 15.3 0.0 1.1 1 0 0 1 1 1 1 Citrate synthase Metal_resist PF13801.1 gi|116755012|ref|YP_844130.1| - 0.018 15.0 2.3 0.025 14.5 1.6 1.2 1 0 0 1 1 1 0 Heavy-metal resistance Ribosomal_L2_C PF03947.13 gi|116755013|ref|YP_844131.1| - 9.1e-47 158.1 0.3 2.2e-45 153.6 0.2 2.1 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|116755013|ref|YP_844131.1| - 1e-16 60.6 0.0 2.5e-16 59.3 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|116755014|ref|YP_844132.1| - 9.3e-17 60.7 0.7 1.3e-16 60.2 0.5 1.2 1 1 0 1 1 1 1 Ribosomal protein L23 WhiA_N PF10298.4 gi|116755014|ref|YP_844132.1| - 0.059 13.2 0.1 0.072 12.9 0.0 1.1 1 0 0 1 1 1 0 WhiA N-terminal LAGLIDADG-like domain Ribosomal_L4 PF00573.17 gi|116755015|ref|YP_844133.1| - 6.6e-43 146.3 0.1 7.5e-43 146.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|116755016|ref|YP_844134.1| - 9.6e-78 261.1 0.0 1.1e-77 260.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|116755017|ref|YP_844135.1| - 4.7e-51 173.8 0.0 6.4e-51 173.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|116755017|ref|YP_844135.1| - 9.9e-05 22.2 0.0 0.14 12.0 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family Band_7 PF01145.20 gi|116755018|ref|YP_844136.1| - 9.8e-37 126.5 2.7 1.4e-36 126.0 1.9 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|116755018|ref|YP_844136.1| - 0.00012 21.7 0.0 0.00018 21.0 0.0 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family AAA_19 PF13245.1 gi|116755018|ref|YP_844136.1| - 0.97 9.2 3.6 1.6 8.5 0.4 2.3 1 1 1 2 2 2 0 Part of AAA domain FlgN PF05130.7 gi|116755018|ref|YP_844136.1| - 3.9 7.7 8.3 8.9 6.5 5.4 1.8 1 1 1 2 2 2 0 FlgN protein NfeD PF01957.13 gi|116755019|ref|YP_844137.1| - 2.1e-31 108.9 0.5 2.1e-31 108.9 0.4 2.5 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|116755019|ref|YP_844137.1| - 2.4e-06 27.3 0.1 4e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 Clp protease ECH PF00378.15 gi|116755019|ref|YP_844137.1| - 0.014 14.5 0.1 0.74 8.8 0.0 2.1 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase family AA_kinase PF00696.23 gi|116755020|ref|YP_844138.1| - 1.7e-42 145.6 1.7 1.9e-42 145.4 1.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family XPG_N PF00752.12 gi|116755020|ref|YP_844138.1| - 0.14 12.4 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 XPG N-terminal domain PYC_OADA PF02436.13 gi|116755021|ref|YP_844139.1| - 4.4e-66 222.0 0.2 6.6e-66 221.4 0.1 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|116755021|ref|YP_844139.1| - 4.7e-44 150.8 0.1 6.5e-44 150.3 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|116755021|ref|YP_844139.1| - 7.3e-21 73.5 1.7 1.5e-20 72.5 1.2 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|116755021|ref|YP_844139.1| - 6e-09 35.4 0.2 0.0033 17.0 0.0 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|116755021|ref|YP_844139.1| - 5.9e-06 25.6 1.5 0.016 14.3 0.1 2.3 1 1 1 2 2 2 2 HlyD family secretion protein RnfC_N PF13375.1 gi|116755021|ref|YP_844139.1| - 1.5e-05 24.6 0.3 6.6e-05 22.5 0.1 2.1 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.1 gi|116755021|ref|YP_844139.1| - 0.00019 21.7 0.1 0.075 13.3 0.0 2.8 2 0 0 2 2 2 1 HlyD family secretion protein HlyD PF00529.15 gi|116755021|ref|YP_844139.1| - 0.00048 19.5 2.2 0.29 10.3 0.3 2.8 2 1 1 3 3 3 2 HlyD family secretion protein GCV_H PF01597.14 gi|116755021|ref|YP_844139.1| - 0.00057 19.5 1.1 0.0015 18.2 0.1 2.2 3 0 0 3 3 3 1 Glycine cleavage H-protein DUF2118 PF09891.4 gi|116755021|ref|YP_844139.1| - 0.022 14.4 1.1 0.055 13.1 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) Peptidase_M23 PF01551.17 gi|116755021|ref|YP_844139.1| - 0.081 12.9 0.5 3.7 7.6 0.0 3.0 2 1 1 3 3 3 0 Peptidase family M23