# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- NadA PF02445.16 gi|116753326|ref|YP_842444.1| - 2.8e-120 401.0 0.5 3.2e-120 400.8 0.5 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein RTC PF01137.21 gi|116753328|ref|YP_842446.1| - 2.8e-81 272.0 0.0 3.2e-81 271.8 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|116753328|ref|YP_842446.1| - 5e-17 62.3 0.0 1e-16 61.3 0.0 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain RPEL PF02755.15 gi|116753328|ref|YP_842446.1| - 0.36 10.6 2.2 0.96 9.2 0.4 2.4 1 1 1 2 2 2 0 RPEL repeat RNA_pol_L_2 PF13656.6 gi|116753329|ref|YP_842447.1| - 7.9e-19 67.2 0.0 9.9e-19 66.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|116753329|ref|YP_842447.1| - 1.9e-05 24.0 0.0 2.6e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain ECR1_N PF14382.6 gi|116753330|ref|YP_842448.1| - 4.1e-14 52.1 0.3 7.4e-14 51.3 0.3 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region DUF5363 PF17320.2 gi|116753330|ref|YP_842448.1| - 0.0068 16.3 0.8 0.012 15.5 0.8 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5363) Auto_anti-p27 PF06677.12 gi|116753330|ref|YP_842448.1| - 0.0097 16.0 1.9 0.016 15.3 1.9 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|116753330|ref|YP_842448.1| - 0.013 15.6 0.8 0.02 14.9 0.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|116753330|ref|YP_842448.1| - 0.013 15.5 1.4 0.041 13.9 1.4 1.8 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA EXOSC1 PF10447.9 gi|116753330|ref|YP_842448.1| - 0.016 15.8 0.4 0.055 14.1 0.4 1.7 1 1 0 1 1 1 0 Exosome component EXOSC1/CSL4 zinc-ribbons_6 PF07191.12 gi|116753330|ref|YP_842448.1| - 0.11 12.4 1.6 0.17 11.9 1.6 1.2 1 0 0 1 1 1 0 zinc-ribbons zf-C4_Topoisom PF01396.19 gi|116753330|ref|YP_842448.1| - 0.24 11.2 3.1 8.4 6.3 0.4 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C3HC4 PF00097.25 gi|116753330|ref|YP_842448.1| - 0.37 10.7 2.8 0.59 10.1 2.8 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) MTS PF05175.14 gi|116753331|ref|YP_842449.1| - 1.1e-14 54.3 0.0 1.4e-14 54.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|116753331|ref|YP_842449.1| - 5.9e-14 52.2 0.1 8.1e-14 51.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|116753331|ref|YP_842449.1| - 2.4e-11 43.6 0.1 3.7e-11 43.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116753331|ref|YP_842449.1| - 4.4e-11 43.3 0.1 8e-11 42.5 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|116753331|ref|YP_842449.1| - 5.5e-09 36.0 0.6 7.9e-08 32.2 0.6 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|116753331|ref|YP_842449.1| - 2.1e-08 34.7 0.0 3.8e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|116753331|ref|YP_842449.1| - 3.4e-06 26.7 0.0 4.7e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|116753331|ref|YP_842449.1| - 3.6e-05 23.6 0.0 4.2e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|116753331|ref|YP_842449.1| - 0.0004 20.1 0.0 0.00059 19.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MetW PF07021.12 gi|116753331|ref|YP_842449.1| - 0.00086 18.9 0.0 0.001 18.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|116753331|ref|YP_842449.1| - 0.0014 18.6 0.0 0.0018 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|116753331|ref|YP_842449.1| - 0.0069 16.3 0.0 0.0097 15.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|116753331|ref|YP_842449.1| - 0.011 16.5 0.0 0.017 15.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.11 gi|116753331|ref|YP_842449.1| - 0.032 13.9 0.2 0.072 12.7 0.0 1.6 2 1 1 3 3 3 0 Nodulation protein S (NodS) Ubie_methyltran PF01209.18 gi|116753331|ref|YP_842449.1| - 0.059 12.7 0.0 0.082 12.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family FmrO PF07091.11 gi|116753331|ref|YP_842449.1| - 0.093 12.3 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) AdoMet_MTase PF07757.13 gi|116753331|ref|YP_842449.1| - 0.1 12.9 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase AviRa PF11599.8 gi|116753331|ref|YP_842449.1| - 0.17 11.3 0.0 0.33 10.4 0.0 1.4 1 0 0 1 1 1 0 RRNA methyltransferase AviRa ABC_tran PF00005.27 gi|116753332|ref|YP_842450.1| - 3.3e-39 134.5 0.0 9.7e-20 71.5 0.0 2.6 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|116753332|ref|YP_842450.1| - 3.7e-12 46.2 8.9 3.5e-06 26.6 1.5 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|116753332|ref|YP_842450.1| - 3.8e-12 45.8 2.7 8.6e-12 44.7 2.7 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|116753332|ref|YP_842450.1| - 3.2e-09 37.0 13.6 0.019 14.8 0.0 4.2 2 2 2 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|116753332|ref|YP_842450.1| - 6.9e-08 32.0 4.2 6.9e-08 32.0 4.2 2.4 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|116753332|ref|YP_842450.1| - 1.5e-07 31.2 13.3 2.4e-06 27.4 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_29 PF13555.6 gi|116753332|ref|YP_842450.1| - 5.7e-05 22.8 0.6 0.077 12.7 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|116753332|ref|YP_842450.1| - 0.00016 22.3 2.5 0.16 12.4 0.3 2.3 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|116753332|ref|YP_842450.1| - 0.00038 20.3 0.0 0.98 9.1 0.0 3.2 3 0 0 3 3 3 1 AAA ATPase domain Rad17 PF03215.15 gi|116753332|ref|YP_842450.1| - 0.00065 19.7 0.2 1.8 8.4 0.1 2.6 2 0 0 2 2 2 2 Rad17 P-loop domain Fer4_7 PF12838.7 gi|116753332|ref|YP_842450.1| - 0.00078 20.0 1.1 0.00078 20.0 1.1 2.3 1 1 0 2 2 2 1 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|116753332|ref|YP_842450.1| - 0.00094 19.1 0.1 1.8 8.4 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase Fer4_21 PF14697.6 gi|116753332|ref|YP_842450.1| - 0.0012 19.0 7.3 0.0019 18.3 7.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116753332|ref|YP_842450.1| - 0.0017 18.5 7.5 0.0035 17.5 7.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|116753332|ref|YP_842450.1| - 0.0032 17.9 1.4 0.85 10.0 0.0 2.9 2 2 0 2 2 2 1 AAA ATPase domain Fer4_2 PF12797.7 gi|116753332|ref|YP_842450.1| - 0.0048 16.9 2.6 0.0048 16.9 2.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116753332|ref|YP_842450.1| - 0.0061 16.6 1.4 0.0061 16.6 1.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_18 PF13238.6 gi|116753332|ref|YP_842450.1| - 0.0066 17.0 0.3 1.8 9.1 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|116753332|ref|YP_842450.1| - 0.013 15.3 0.9 3.5 7.3 0.1 2.4 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|116753332|ref|YP_842450.1| - 0.015 15.5 0.1 15 5.9 0.1 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Fer4_16 PF13484.6 gi|116753332|ref|YP_842450.1| - 0.034 15.1 1.2 0.034 15.1 1.2 2.4 3 0 0 3 3 1 0 4Fe-4S double cluster binding domain RNA_helicase PF00910.22 gi|116753332|ref|YP_842450.1| - 0.035 14.5 0.1 11 6.4 0.1 2.5 2 0 0 2 2 2 0 RNA helicase Fer4_4 PF12800.7 gi|116753332|ref|YP_842450.1| - 0.046 14.3 12.5 0.069 13.7 3.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain MeaB PF03308.16 gi|116753332|ref|YP_842450.1| - 0.055 12.4 1.2 2.2 7.2 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_27 PF13514.6 gi|116753332|ref|YP_842450.1| - 0.18 11.4 0.1 15 5.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|116753332|ref|YP_842450.1| - 0.21 11.6 0.4 29 4.7 0.0 3.1 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|116753332|ref|YP_842450.1| - 0.96 9.3 3.0 61 3.5 0.1 3.5 3 1 0 3 3 3 0 NTPase AAA_25 PF13481.6 gi|116753332|ref|YP_842450.1| - 1.4 8.4 3.2 19 4.8 0.0 3.1 3 0 0 3 3 3 0 AAA domain Umbravirus_LDM PF04817.12 gi|116753333|ref|YP_842451.1| - 0.036 13.4 0.0 0.041 13.3 0.0 1.0 1 0 0 1 1 1 0 Umbravirus long distance movement (LDM) family Phage_holin_5_2 PF16079.5 gi|116753333|ref|YP_842451.1| - 0.039 14.3 1.5 0.073 13.4 1.4 1.5 1 1 0 1 1 1 0 Phage holin family Hol44, in holin superfamily V ThiS PF02597.20 gi|116753334|ref|YP_842452.1| - 1.9e-14 54.0 0.0 2.2e-14 53.9 0.0 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|116753334|ref|YP_842452.1| - 0.099 13.0 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) OmdA PF13376.6 gi|116753334|ref|YP_842452.1| - 0.15 12.1 0.0 3.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Bacteriocin-protection, YdeI or OmpD-Associated MoaE PF02391.17 gi|116753335|ref|YP_842453.1| - 5.2e-31 107.3 0.1 5.9e-31 107.1 0.1 1.0 1 0 0 1 1 1 1 MoaE protein DUF2218 PF09981.9 gi|116753335|ref|YP_842453.1| - 0.012 16.0 0.0 0.022 15.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) CutA1 PF03091.15 gi|116753336|ref|YP_842454.1| - 4.3e-32 109.9 0.0 4.8e-32 109.8 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Arg_repressor_C PF02863.18 gi|116753336|ref|YP_842454.1| - 0.12 12.3 0.0 3.9 7.4 0.0 2.1 2 0 0 2 2 2 0 Arginine repressor, C-terminal domain CxxCxxCC PF03692.15 gi|116753337|ref|YP_842455.1| - 3.7e-11 43.6 2.9 5e-11 43.1 2.9 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain AMP-binding_C_2 PF14535.6 gi|116753338|ref|YP_842456.1| - 2.1e-19 69.6 0.0 6.4e-19 68.1 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|116753338|ref|YP_842456.1| - 4.1e-18 65.2 0.6 5.4e-18 64.8 0.1 1.4 2 0 0 2 2 2 1 AMP-binding enzyme LuxE PF04443.12 gi|116753338|ref|YP_842456.1| - 5.6e-07 28.9 0.0 0.00011 21.4 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE AIRC PF00731.20 gi|116753339|ref|YP_842457.1| - 6.8e-46 155.5 0.7 7.5e-46 155.4 0.7 1.0 1 0 0 1 1 1 1 AIR carboxylase Usp PF00582.26 gi|116753340|ref|YP_842458.1| - 6e-34 117.6 3.4 6.9e-34 117.4 3.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|116753340|ref|YP_842458.1| - 0.037 14.0 0.0 0.051 13.6 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase AP_endonuc_2 PF01261.24 gi|116753340|ref|YP_842458.1| - 0.084 12.3 0.2 0.13 11.7 0.2 1.3 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Cytidylate_kin2 PF13189.6 gi|116753340|ref|YP_842458.1| - 0.1 12.7 0.4 0.13 12.4 0.4 1.2 1 0 0 1 1 1 0 Cytidylate kinase-like family Radical_SAM PF04055.21 gi|116753341|ref|YP_842459.1| - 2.2e-07 31.4 0.1 7.1e-07 29.8 0.1 2.2 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|116753341|ref|YP_842459.1| - 2.8e-05 24.2 0.0 5e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|116753341|ref|YP_842459.1| - 0.0014 18.9 0.0 0.0025 18.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2551 PF10826.8 gi|116753342|ref|YP_842460.1| - 1.4e-30 105.3 0.2 1.6e-30 105.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.19 gi|116753342|ref|YP_842460.1| - 0.0016 18.6 0.0 0.0021 18.2 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Arg_repressor PF01316.21 gi|116753342|ref|YP_842460.1| - 0.012 15.3 0.0 0.094 12.5 0.0 2.0 1 1 1 2 2 2 0 Arginine repressor, DNA binding domain Radical_SAM PF04055.21 gi|116753343|ref|YP_842461.1| - 5.5e-11 43.1 0.0 1.6e-10 41.6 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|116753343|ref|YP_842461.1| - 0.00016 21.7 0.1 0.0038 17.2 0.0 2.8 3 1 0 3 3 3 1 B12 binding domain HcyBio PF01837.16 gi|116753344|ref|YP_842462.1| - 1.4e-140 468.0 0.0 1.8e-140 467.7 0.0 1.1 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|116753344|ref|YP_842462.1| - 8.7e-26 90.1 10.8 5e-13 49.3 0.4 3.3 4 0 0 4 4 4 2 CBS domain IF3_N PF05198.16 gi|116753344|ref|YP_842462.1| - 0.079 13.2 0.7 19 5.6 0.0 2.9 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain DUF2379 PF09543.10 gi|116753344|ref|YP_842462.1| - 0.18 12.0 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2379) Fer4 PF00037.27 gi|116753345|ref|YP_842463.1| - 2.9e-15 55.4 17.0 4.9e-09 35.6 2.6 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|116753345|ref|YP_842463.1| - 6.8e-12 45.8 26.2 2.5e-09 37.6 13.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116753345|ref|YP_842463.1| - 1e-11 44.3 18.3 6.7e-08 32.3 2.9 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116753345|ref|YP_842463.1| - 4.2e-10 39.6 11.5 4.2e-10 39.6 11.5 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116753345|ref|YP_842463.1| - 4.3e-10 39.1 18.4 8.1e-07 28.8 3.9 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116753345|ref|YP_842463.1| - 1.8e-08 34.4 13.9 0.00025 21.2 2.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116753345|ref|YP_842463.1| - 1.9e-08 35.1 10.7 0.00082 20.3 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|116753345|ref|YP_842463.1| - 6.7e-08 32.5 18.1 0.00013 22.2 3.3 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|116753345|ref|YP_842463.1| - 2.8e-07 30.6 13.6 0.00024 21.2 0.6 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|116753345|ref|YP_842463.1| - 3.1e-06 27.7 20.1 0.0081 17.0 6.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain NIL PF09383.10 gi|116753345|ref|YP_842463.1| - 4.9e-05 23.1 0.0 6.6e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_18 PF13746.6 gi|116753345|ref|YP_842463.1| - 0.00027 21.1 13.0 0.0034 17.5 13.1 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|116753345|ref|YP_842463.1| - 0.00083 19.8 16.2 0.085 13.3 4.7 2.3 1 1 3 4 4 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|116753345|ref|YP_842463.1| - 0.00097 19.6 14.5 0.043 14.4 3.6 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|116753345|ref|YP_842463.1| - 0.0029 18.1 18.4 0.079 13.5 3.6 2.6 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|116753345|ref|YP_842463.1| - 0.011 16.5 11.5 0.14 12.9 1.4 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|116753345|ref|YP_842463.1| - 0.12 13.2 15.9 0.97 10.3 3.3 2.3 1 1 1 3 3 3 0 4Fe-4S dicluster domain Met_10 PF02475.16 gi|116753346|ref|YP_842464.1| - 8.8e-56 188.8 0.0 1.3e-55 188.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|116753346|ref|YP_842464.1| - 8.7e-13 47.9 0.0 1.9e-12 46.9 0.0 1.5 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|116753346|ref|YP_842464.1| - 2.7e-08 34.4 0.0 5.6e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|116753346|ref|YP_842464.1| - 4.3e-08 32.9 0.0 1.4e-07 31.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|116753346|ref|YP_842464.1| - 1.5e-06 28.8 0.0 3e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|116753346|ref|YP_842464.1| - 3.6e-06 26.7 0.0 6.1e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|116753346|ref|YP_842464.1| - 1.2e-05 25.1 0.0 2.4e-05 24.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|116753346|ref|YP_842464.1| - 6.1e-05 22.5 0.0 8.8e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|116753346|ref|YP_842464.1| - 9.3e-05 22.1 0.0 0.00015 21.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltr_RsmB-F PF01189.17 gi|116753346|ref|YP_842464.1| - 0.00018 21.2 0.1 0.00061 19.5 0.2 1.8 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F SAM_MT PF04445.13 gi|116753346|ref|YP_842464.1| - 0.0019 17.7 0.4 0.0038 16.7 0.1 1.6 2 0 0 2 2 2 1 Putative SAM-dependent methyltransferase ADH_zinc_N PF00107.26 gi|116753346|ref|YP_842464.1| - 0.0023 17.9 0.0 0.12 12.3 0.0 2.3 1 1 1 2 2 2 1 Zinc-binding dehydrogenase TRM PF02005.16 gi|116753346|ref|YP_842464.1| - 0.0054 15.9 0.0 0.0076 15.5 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase DNA_methylase PF00145.17 gi|116753346|ref|YP_842464.1| - 0.016 14.6 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_23 PF13489.6 gi|116753346|ref|YP_842464.1| - 0.027 14.3 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|116753346|ref|YP_842464.1| - 0.029 13.8 0.0 0.048 13.1 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB N6_N4_Mtase PF01555.18 gi|116753346|ref|YP_842464.1| - 0.053 13.2 0.0 0.089 12.5 0.0 1.3 1 0 0 1 1 1 0 DNA methylase GatB_N PF02934.15 gi|116753347|ref|YP_842465.1| - 1e-69 235.0 0.0 2e-69 234.0 0.0 1.5 1 1 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|116753347|ref|YP_842465.1| - 2.7e-19 69.5 0.0 6.7e-19 68.2 0.0 1.7 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|116753347|ref|YP_842465.1| - 4.4e-15 55.7 0.0 9.1e-15 54.7 0.0 1.6 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|116753347|ref|YP_842465.1| - 5.8e-06 26.4 0.3 1.3e-05 25.3 0.3 1.6 1 0 0 1 1 1 1 Yqey-like protein MDMPI_N PF11716.8 gi|116753347|ref|YP_842465.1| - 0.17 12.5 1.2 1 10.0 0.3 2.4 2 0 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain CBFD_NFYB_HMF PF00808.23 gi|116753348|ref|YP_842466.1| - 7.3e-16 58.2 0.7 8.1e-16 58.1 0.7 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|116753348|ref|YP_842466.1| - 6.3e-10 39.5 0.2 7.6e-10 39.3 0.2 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 gi|116753348|ref|YP_842466.1| - 4.9e-06 26.6 0.5 5.1e-06 26.6 0.5 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-T_C PF15511.6 gi|116753348|ref|YP_842466.1| - 2.2e-05 24.5 0.0 2.4e-05 24.4 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold Bromo_TP PF07524.13 gi|116753348|ref|YP_842466.1| - 0.00035 20.5 0.0 0.00039 20.4 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.6 gi|116753348|ref|YP_842466.1| - 0.00042 20.6 0.0 0.00042 20.6 0.0 1.2 1 0 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|116753348|ref|YP_842466.1| - 0.0011 19.0 0.0 0.0013 18.8 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit PP_kinase_C_1 PF17941.1 gi|116753348|ref|YP_842466.1| - 0.11 12.0 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain 1 Peptidase_C39 PF03412.15 gi|116753348|ref|YP_842466.1| - 0.13 12.0 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Peptidase C39 family Aconitase_C PF00694.19 gi|116753349|ref|YP_842467.1| - 4.7e-20 72.2 0.2 1e-19 71.1 0.2 1.7 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|116753349|ref|YP_842467.1| - 0.0066 16.1 0.1 0.058 13.0 0.0 1.9 1 1 1 2 2 2 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.20 gi|116753350|ref|YP_842468.1| - 1.6e-99 333.3 0.0 1.8e-99 333.2 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase RNA_pol_Rpb5_C PF01191.19 gi|116753351|ref|YP_842469.1| - 1.3e-29 101.8 0.3 1.5e-29 101.7 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Ribosomal_S17 PF00366.20 gi|116753351|ref|YP_842469.1| - 0.012 15.8 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S17 RNA_pol_Rpb2_1 PF04563.15 gi|116753352|ref|YP_842470.1| - 6e-53 179.4 0.5 7.2e-53 179.1 0.5 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|116753352|ref|YP_842470.1| - 1.9e-29 102.6 0.2 2.9e-29 102.1 0.2 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|116753352|ref|YP_842470.1| - 1.9e-25 88.8 0.0 3.6e-25 87.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.28 gi|116753353|ref|YP_842471.1| - 2.4e-126 421.9 0.0 3.1e-126 421.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|116753353|ref|YP_842471.1| - 3e-29 101.2 0.0 5.7e-29 100.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|116753353|ref|YP_842471.1| - 9.3e-23 80.3 1.4 1.8e-22 79.4 1.4 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|116753353|ref|YP_842471.1| - 3.2e-10 40.4 3.3 8.6e-10 39.0 3.3 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.9 gi|116753353|ref|YP_842471.1| - 0.018 15.3 0.2 0.052 13.8 0.2 1.7 1 0 0 1 1 1 0 RNA polymerase beta subunit external 1 domain TF_Zn_Ribbon PF08271.12 gi|116753353|ref|YP_842471.1| - 0.035 13.6 1.2 4 7.0 0.1 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding Cys_rich_CPCC PF14206.6 gi|116753353|ref|YP_842471.1| - 0.044 13.6 0.6 0.28 11.0 0.4 2.2 2 0 0 2 2 2 0 Cysteine-rich CPCC Auto_anti-p27 PF06677.12 gi|116753353|ref|YP_842471.1| - 0.12 12.5 2.1 0.23 11.7 2.1 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_Rpb1_1 PF04997.12 gi|116753354|ref|YP_842472.1| - 1.3e-104 349.9 0.0 3.3e-104 348.6 0.0 1.6 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|116753354|ref|YP_842472.1| - 5.5e-72 241.4 0.2 8.5e-72 240.8 0.2 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|116753354|ref|YP_842472.1| - 2.9e-33 115.0 0.0 5e-33 114.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|116753354|ref|YP_842472.1| - 2.4e-32 111.1 0.0 4.8e-32 110.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|116753354|ref|YP_842472.1| - 2.5e-28 99.3 0.0 3.8e-28 98.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 TraB PF01963.17 gi|116753354|ref|YP_842472.1| - 0.029 14.3 0.0 0.056 13.3 0.0 1.4 1 0 0 1 1 1 0 TraB family DUF1287 PF06940.11 gi|116753354|ref|YP_842472.1| - 0.14 11.8 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1287) RNA_pol_Rpb1_5 PF04998.17 gi|116753355|ref|YP_842473.1| - 2.4e-56 191.1 1.3 3.1e-56 190.8 1.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Ribosomal_L9_C PF03948.14 gi|116753355|ref|YP_842473.1| - 0.013 15.9 0.3 1.8 9.1 0.1 2.9 2 0 0 2 2 2 0 Ribosomal protein L9, C-terminal domain NAC PF01849.18 gi|116753355|ref|YP_842473.1| - 0.081 12.9 0.2 0.21 11.6 0.2 1.7 1 0 0 1 1 1 0 NAC domain HTH_26 PF13443.6 gi|116753355|ref|YP_842473.1| - 0.1 13.1 0.0 11 6.6 0.0 2.6 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Ribosomal_L7Ae PF01248.26 gi|116753356|ref|YP_842474.1| - 1.1e-14 53.9 0.0 1.3e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|116753357|ref|YP_842475.1| - 4.7e-21 74.4 4.7 6e-15 54.8 1.2 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|116753357|ref|YP_842475.1| - 4.3e-17 61.9 1.0 4.3e-17 61.9 1.0 2.1 1 1 1 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|116753357|ref|YP_842475.1| - 3.5e-10 39.6 1.0 2.6e-05 24.0 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|116753357|ref|YP_842475.1| - 9.1e-05 22.2 2.2 0.001 18.8 0.5 2.3 2 0 0 2 2 2 1 KH domain Ribosom_S12_S23 PF00164.25 gi|116753358|ref|YP_842476.1| - 2.5e-47 159.2 0.6 3e-47 159.0 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|116753359|ref|YP_842477.1| - 2.4e-40 137.6 3.5 2.9e-40 137.3 3.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e FdhD-NarQ PF02634.15 gi|116753360|ref|YP_842478.1| - 7.6e-58 196.0 0.8 1.2e-55 188.8 0.8 2.0 1 1 0 1 1 1 1 FdhD/NarQ family ABC_tran PF00005.27 gi|116753361|ref|YP_842479.1| - 3.2e-34 118.4 0.0 4.8e-34 117.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116753361|ref|YP_842479.1| - 6.6e-13 49.1 0.0 2.3e-07 31.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|116753361|ref|YP_842479.1| - 7.5e-09 36.2 0.0 1.4e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|116753361|ref|YP_842479.1| - 8.3e-05 22.4 0.0 0.11 12.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|116753361|ref|YP_842479.1| - 0.00018 21.2 0.1 0.00033 20.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|116753361|ref|YP_842479.1| - 0.00033 21.2 0.0 0.00053 20.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|116753361|ref|YP_842479.1| - 0.00039 19.9 0.0 0.64 9.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|116753361|ref|YP_842479.1| - 0.0026 18.2 0.1 0.038 14.4 0.1 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|116753361|ref|YP_842479.1| - 0.011 16.1 0.0 0.027 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 gi|116753361|ref|YP_842479.1| - 0.044 12.8 0.1 0.071 12.1 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|116753361|ref|YP_842479.1| - 0.073 13.0 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|116753361|ref|YP_842479.1| - 0.12 12.7 0.1 0.4 11.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|116753361|ref|YP_842479.1| - 0.14 12.0 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|116753361|ref|YP_842479.1| - 0.15 11.8 0.1 0.28 10.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 gi|116753361|ref|YP_842479.1| - 0.18 10.6 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain AAA_24 PF13479.6 gi|116753361|ref|YP_842479.1| - 0.43 10.3 1.4 4.3 7.0 0.2 2.4 2 1 1 3 3 3 0 AAA domain ABC2_membrane PF01061.24 gi|116753362|ref|YP_842480.1| - 4.6e-36 124.2 19.4 6.1e-36 123.8 19.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|116753362|ref|YP_842480.1| - 8.4e-15 54.7 19.4 8.4e-15 54.7 19.4 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein Crystall PF00030.19 gi|116753363|ref|YP_842481.1| - 7.3e-08 32.5 0.0 9.6e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Beta/Gamma crystallin IL4_i_Ig PF18258.1 gi|116753363|ref|YP_842481.1| - 0.15 12.3 0.0 0.31 11.3 0.0 1.6 1 1 0 1 1 1 0 Interleukin-4 inducing immunoglobulin-binding domain DUF1699 PF08004.11 gi|116753364|ref|YP_842482.1| - 5.2e-60 200.8 0.9 5.8e-60 200.7 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) IMS PF00817.20 gi|116753364|ref|YP_842482.1| - 0.0013 18.8 1.3 0.061 13.3 1.3 2.1 1 1 0 1 1 1 1 impB/mucB/samB family Rep_fac_C PF08542.11 gi|116753364|ref|YP_842482.1| - 0.14 12.6 0.4 0.25 11.8 0.2 1.9 2 1 0 2 2 2 0 Replication factor C C-terminal domain TIM PF00121.18 gi|116753366|ref|YP_842484.1| - 1.3e-12 47.6 0.0 1.6e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|116753366|ref|YP_842484.1| - 0.00051 19.4 0.4 0.00051 19.4 0.4 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|116753366|ref|YP_842484.1| - 0.0055 16.1 1.6 0.0055 16.1 1.6 1.8 2 0 0 2 2 2 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|116753366|ref|YP_842484.1| - 0.032 13.3 2.0 0.062 12.3 2.0 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase IGPS PF00218.21 gi|116753366|ref|YP_842484.1| - 0.071 12.3 0.0 0.1 11.7 0.0 1.5 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Acylphosphatase PF00708.18 gi|116753367|ref|YP_842485.1| - 6.1e-23 81.0 0.0 6.8e-23 80.9 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Fer4 PF00037.27 gi|116753368|ref|YP_842486.1| - 4e-11 42.2 18.1 4.5e-07 29.4 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|116753368|ref|YP_842486.1| - 2.2e-10 40.9 23.6 8.4e-06 26.3 15.7 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116753368|ref|YP_842486.1| - 1.9e-09 38.3 10.4 2.8e-05 24.9 1.3 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|116753368|ref|YP_842486.1| - 5.9e-08 32.7 13.4 8.4e-05 22.6 1.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116753368|ref|YP_842486.1| - 6e-08 32.3 12.0 0.00025 20.9 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116753368|ref|YP_842486.1| - 1.1e-05 25.4 14.2 8.6e-05 22.6 14.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116753368|ref|YP_842486.1| - 1.4e-05 24.9 16.3 0.00013 21.8 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|116753368|ref|YP_842486.1| - 0.0002 21.7 11.0 0.013 16.0 2.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|116753368|ref|YP_842486.1| - 0.00051 20.3 16.6 0.0017 18.7 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|116753368|ref|YP_842486.1| - 0.00053 20.7 4.4 0.00053 20.7 4.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|116753368|ref|YP_842486.1| - 0.0013 18.8 16.1 0.0044 17.1 1.9 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|116753368|ref|YP_842486.1| - 0.0018 18.8 14.7 0.0084 16.6 2.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|116753368|ref|YP_842486.1| - 0.0076 16.4 1.6 0.0076 16.4 1.6 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|116753368|ref|YP_842486.1| - 0.014 15.9 1.7 0.014 15.9 1.7 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|116753368|ref|YP_842486.1| - 0.024 15.3 9.9 0.45 11.3 0.8 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|116753368|ref|YP_842486.1| - 0.059 14.2 16.9 0.16 12.8 3.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-C2H2_9 PF16293.5 gi|116753368|ref|YP_842486.1| - 0.074 12.9 0.4 0.26 11.2 0.3 1.9 2 0 0 2 2 2 0 C2H2 type zinc-finger (1 copy) Fer4_19 PF06902.11 gi|116753368|ref|YP_842486.1| - 6.5 6.9 11.3 1.1e+02 3.0 11.3 2.8 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster FAD_binding_3 PF01494.19 gi|116753369|ref|YP_842487.1| - 2.2e-18 66.6 5.1 2.6e-13 50.0 1.6 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|116753369|ref|YP_842487.1| - 3.8e-11 42.7 3.2 1.3e-08 34.4 0.2 2.5 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|116753369|ref|YP_842487.1| - 4.7e-10 39.4 6.2 2.3e-09 37.1 6.2 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|116753369|ref|YP_842487.1| - 9.4e-09 34.8 1.0 0.00035 19.7 0.6 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|116753369|ref|YP_842487.1| - 8.9e-08 31.2 0.8 1.6e-07 30.4 0.8 1.4 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.24 gi|116753369|ref|YP_842487.1| - 2.1e-07 30.9 2.0 0.00097 18.8 0.1 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|116753369|ref|YP_842487.1| - 7.4e-07 28.4 0.2 0.023 13.6 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|116753369|ref|YP_842487.1| - 2.2e-06 27.2 2.1 2.2e-06 27.2 2.1 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|116753369|ref|YP_842487.1| - 4.1e-06 26.9 0.1 1e-05 25.6 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|116753369|ref|YP_842487.1| - 9.3e-06 25.0 0.1 3.1e-05 23.3 0.1 1.9 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|116753369|ref|YP_842487.1| - 3e-05 23.3 1.4 5.6e-05 22.4 0.3 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A CF222 PF15661.5 gi|116753369|ref|YP_842487.1| - 9.6e-05 21.5 0.0 0.00013 21.0 0.0 1.1 1 0 0 1 1 1 1 C6orf222, uncharacterised family AlaDh_PNT_C PF01262.21 gi|116753369|ref|YP_842487.1| - 0.0022 17.3 0.1 0.0049 16.2 0.1 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|116753369|ref|YP_842487.1| - 0.0029 18.1 0.3 0.0029 18.1 0.3 2.3 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|116753369|ref|YP_842487.1| - 0.011 15.6 0.3 0.03 14.2 0.1 1.9 2 0 0 2 2 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|116753369|ref|YP_842487.1| - 0.016 14.5 0.3 0.028 13.7 0.3 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|116753369|ref|YP_842487.1| - 0.063 13.8 0.0 0.19 12.2 0.0 1.9 2 0 0 2 2 2 0 XdhC Rossmann domain SE PF08491.10 gi|116753369|ref|YP_842487.1| - 0.19 10.8 0.1 0.29 10.2 0.1 1.2 1 0 0 1 1 1 0 Squalene epoxidase Pro_isomerase PF00160.21 gi|116753370|ref|YP_842488.1| - 7.8e-52 175.7 0.0 8.6e-52 175.6 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NosD PF05048.13 gi|116753371|ref|YP_842489.1| - 6e-61 205.8 60.9 1.6e-26 93.0 14.8 4.3 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|116753371|ref|YP_842489.1| - 1.9e-50 170.8 98.4 4.1e-18 65.7 24.5 5.1 2 2 3 5 5 5 5 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|116753371|ref|YP_842489.1| - 1.9e-07 31.1 30.4 0.013 15.4 2.7 5.1 2 2 2 4 4 4 4 Pectate lyase superfamily protein HupF_HypC PF01455.18 gi|116753371|ref|YP_842489.1| - 0.063 13.4 0.3 0.16 12.2 0.3 1.6 1 0 0 1 1 1 0 HupF/HypC family AsnC_trans_reg2 PF17805.1 gi|116753372|ref|YP_842490.1| - 5.4e-31 106.6 0.9 1.4e-30 105.2 0.1 1.9 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|116753372|ref|YP_842490.1| - 4.6e-11 42.3 0.5 2e-10 40.3 0.2 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|116753372|ref|YP_842490.1| - 2.3e-06 27.1 1.3 2.9e-05 23.5 1.3 2.3 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|116753372|ref|YP_842490.1| - 0.00046 20.2 0.2 0.00088 19.3 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|116753372|ref|YP_842490.1| - 0.0039 16.9 0.0 0.0065 16.2 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain MarR_2 PF12802.7 gi|116753372|ref|YP_842490.1| - 0.028 14.3 0.1 0.046 13.6 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|116753372|ref|YP_842490.1| - 0.032 14.2 0.1 0.072 13.1 0.0 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|116753372|ref|YP_842490.1| - 0.082 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family AsnC_trans_reg PF01037.21 gi|116753372|ref|YP_842490.1| - 0.082 12.9 0.1 0.17 11.9 0.1 1.5 1 1 0 1 1 1 0 Lrp/AsnC ligand binding domain MarR PF01047.22 gi|116753372|ref|YP_842490.1| - 0.084 12.8 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|116753372|ref|YP_842490.1| - 0.086 12.8 0.0 0.41 10.6 0.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|116753372|ref|YP_842490.1| - 0.1 12.4 0.1 0.27 11.1 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|116753372|ref|YP_842490.1| - 0.11 11.9 0.0 0.52 9.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 gi|116753372|ref|YP_842490.1| - 0.13 12.2 0.1 0.3 11.1 0.1 1.7 1 1 0 1 1 1 0 HTH domain Shikimate_DH PF01488.20 gi|116753373|ref|YP_842491.1| - 1.5e-40 138.5 0.1 3.6e-40 137.2 0.1 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|116753373|ref|YP_842491.1| - 2e-36 125.0 0.9 3.6e-36 124.1 0.1 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|116753373|ref|YP_842491.1| - 4.8e-20 71.8 6.1 1.3e-19 70.4 6.1 1.8 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|116753373|ref|YP_842491.1| - 2.2e-05 25.0 0.4 0.0001 22.8 0.1 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DEAD_2 PF06733.15 gi|116753373|ref|YP_842491.1| - 0.0078 15.8 0.0 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 DEAD_2 THF_DHG_CYH_C PF02882.19 gi|116753373|ref|YP_842491.1| - 0.021 14.1 0.2 0.16 11.2 0.3 2.3 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Peptidase_M36 PF02128.15 gi|116753373|ref|YP_842491.1| - 0.047 12.8 0.0 0.067 12.3 0.0 1.1 1 0 0 1 1 1 0 Fungalysin metallopeptidase (M36) Mst1_SARAH PF11629.8 gi|116753373|ref|YP_842491.1| - 0.18 11.9 4.6 0.48 10.5 4.6 1.8 1 0 0 1 1 1 0 C terminal SARAH domain of Mst1 DUF2115 PF09888.9 gi|116753373|ref|YP_842491.1| - 0.18 12.3 1.8 0.38 11.3 1.8 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) ALAD PF00490.21 gi|116753374|ref|YP_842492.1| - 1.2e-144 481.3 0.2 1.4e-144 481.2 0.2 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase TraB PF01963.17 gi|116753376|ref|YP_842494.1| - 2.9e-05 24.1 0.3 5e-05 23.3 0.3 1.4 1 1 0 1 1 1 1 TraB family GSH-S_ATP PF02955.16 gi|116753376|ref|YP_842494.1| - 0.017 14.5 0.0 0.029 13.8 0.0 1.5 1 1 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain SF-assemblin PF06705.11 gi|116753376|ref|YP_842494.1| - 0.33 10.3 4.0 1.9 7.8 0.1 2.1 2 0 0 2 2 2 0 SF-assemblin/beta giardin ArsA_HSP20 PF17886.1 gi|116753377|ref|YP_842495.1| - 3.8e-07 29.6 0.1 1.2e-06 28.0 0.1 1.9 1 1 1 2 2 2 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|116753377|ref|YP_842495.1| - 5.2e-05 23.3 0.1 0.048 13.8 0.1 2.4 1 1 1 2 2 2 2 Hsp20/alpha crystallin family GvpH PF05455.11 gi|116753377|ref|YP_842495.1| - 0.0011 19.0 0.2 0.0019 18.3 0.2 1.3 1 0 0 1 1 1 1 GvpH HSBP1 PF06825.12 gi|116753377|ref|YP_842495.1| - 0.19 11.6 0.1 0.31 10.9 0.1 1.4 1 0 0 1 1 1 0 Heat shock factor binding protein 1 GvpL_GvpF PF06386.11 gi|116753379|ref|YP_842497.1| - 3.1e-35 122.3 0.4 3.7e-17 63.1 0.2 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF Transket_pyr PF02779.24 gi|116753379|ref|YP_842497.1| - 0.13 11.9 0.0 0.36 10.5 0.0 1.7 1 1 1 2 2 2 0 Transketolase, pyrimidine binding domain GvpO PF05800.11 gi|116753380|ref|YP_842498.1| - 6.1e-28 96.6 0.1 6.5e-28 96.5 0.1 1.0 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO DUF2835 PF11197.8 gi|116753380|ref|YP_842498.1| - 0.14 12.0 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2835) AAA_5 PF07728.14 gi|116753382|ref|YP_842500.1| - 2.1e-16 60.2 0.0 2.5e-15 56.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|116753382|ref|YP_842500.1| - 5.9e-06 26.7 0.0 1.3e-05 25.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|116753382|ref|YP_842500.1| - 5.7e-05 22.7 0.0 0.00011 21.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|116753382|ref|YP_842500.1| - 0.00038 20.1 0.0 0.0008 19.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|116753382|ref|YP_842500.1| - 0.00067 20.1 0.0 0.0018 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|116753382|ref|YP_842500.1| - 0.001 18.4 0.0 0.085 12.1 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin ABC_tran PF00005.27 gi|116753382|ref|YP_842500.1| - 0.004 17.7 0.0 0.012 16.1 0.0 1.9 2 0 0 2 2 2 1 ABC transporter IPT PF01745.16 gi|116753382|ref|YP_842500.1| - 0.0051 16.2 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 Isopentenyl transferase AAA_3 PF07726.11 gi|116753382|ref|YP_842500.1| - 0.0074 16.1 0.0 0.16 11.8 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|116753382|ref|YP_842500.1| - 0.0098 16.1 0.0 0.019 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|116753382|ref|YP_842500.1| - 0.013 15.7 0.2 0.052 13.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|116753382|ref|YP_842500.1| - 0.016 14.9 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein TsaE PF02367.17 gi|116753382|ref|YP_842500.1| - 0.022 14.8 0.0 0.51 10.4 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|116753382|ref|YP_842500.1| - 0.023 15.0 0.0 0.095 13.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|116753382|ref|YP_842500.1| - 0.032 14.6 0.0 0.076 13.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase RuvB_N PF05496.12 gi|116753382|ref|YP_842500.1| - 0.033 13.9 0.0 0.068 12.9 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|116753382|ref|YP_842500.1| - 0.033 14.1 0.0 0.14 12.0 0.0 2.0 2 0 0 2 2 2 0 NACHT domain Sigma54_activ_2 PF14532.6 gi|116753382|ref|YP_842500.1| - 0.068 13.3 0.0 0.17 12.0 0.0 1.7 1 1 1 2 2 2 0 Sigma-54 interaction domain TIP49 PF06068.13 gi|116753382|ref|YP_842500.1| - 0.081 12.1 0.0 0.18 11.0 0.0 1.5 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_18 PF13238.6 gi|116753382|ref|YP_842500.1| - 0.097 13.2 0.0 0.25 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|116753382|ref|YP_842500.1| - 0.12 11.8 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_6 PF12774.7 gi|116753382|ref|YP_842500.1| - 0.14 11.1 0.0 0.37 9.7 0.0 1.7 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region Apolipoprotein PF01442.18 gi|116753383|ref|YP_842501.1| - 4.9e-05 23.3 21.2 0.013 15.4 4.9 2.7 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain DLP_helical PF18709.1 gi|116753383|ref|YP_842501.1| - 0.012 14.8 4.2 0.5 9.5 1.4 2.4 1 1 1 2 2 2 0 Dynamin-like helical domain DUF3135 PF11333.8 gi|116753383|ref|YP_842501.1| - 0.047 14.0 0.3 1.6 9.0 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3135) Zw10 PF06248.13 gi|116753383|ref|YP_842501.1| - 0.076 11.6 0.7 0.13 10.8 0.7 1.4 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 Tsc35 PF15079.6 gi|116753383|ref|YP_842501.1| - 0.084 12.4 4.9 1.2 8.6 0.3 2.5 2 1 0 2 2 2 0 Testis-specific protein 35 WXG100 PF06013.12 gi|116753383|ref|YP_842501.1| - 0.13 12.6 3.7 1.1 9.5 0.2 3.6 1 1 1 3 3 3 0 Proteins of 100 residues with WXG ApoLp-III PF07464.11 gi|116753383|ref|YP_842501.1| - 0.13 12.3 6.6 0.13 12.3 0.4 3.2 2 1 1 3 3 3 0 Apolipophorin-III precursor (apoLp-III) ApoO PF09769.9 gi|116753383|ref|YP_842501.1| - 0.18 11.8 2.7 6.1 6.8 0.1 3.6 1 1 3 4 4 4 0 Apolipoprotein O Fib_alpha PF08702.10 gi|116753383|ref|YP_842501.1| - 0.36 11.0 1.9 1.4 9.0 0.3 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Prominin PF05478.11 gi|116753383|ref|YP_842501.1| - 0.47 8.4 1.8 2.6 5.9 0.4 2.0 1 1 1 2 2 2 0 Prominin Flagellin_N PF00669.20 gi|116753383|ref|YP_842501.1| - 0.49 10.5 6.4 2.2 8.4 0.1 3.3 2 1 1 3 3 3 0 Bacterial flagellin N-terminal helical region Tektin PF03148.14 gi|116753383|ref|YP_842501.1| - 0.52 9.0 8.4 0.55 8.9 1.5 2.6 1 1 0 2 2 2 0 Tektin family DUF334 PF03904.13 gi|116753383|ref|YP_842501.1| - 0.55 9.7 5.7 5.9 6.4 0.1 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF334) DUF16 PF01519.16 gi|116753383|ref|YP_842501.1| - 1.2 9.7 5.7 2.5 8.6 1.8 3.2 2 1 0 2 2 2 0 Protein of unknown function DUF16 DUF1664 PF07889.12 gi|116753383|ref|YP_842501.1| - 2.6 8.1 8.6 6 6.9 0.4 3.7 2 1 2 4 4 4 0 Protein of unknown function (DUF1664) DUF4618 PF15397.6 gi|116753383|ref|YP_842501.1| - 4.7 6.6 7.4 54 3.1 4.0 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4618) COG2 PF06148.11 gi|116753383|ref|YP_842501.1| - 5.3 7.1 10.6 7.5 6.6 0.2 3.8 2 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 kleA_kleC PF17383.2 gi|116753383|ref|YP_842501.1| - 8.1 6.9 10.2 1.8 9.0 1.3 3.6 2 1 1 4 4 4 0 Uncharacterized KorC regulated protein A Gas_vesicle PF00741.18 gi|116753384|ref|YP_842502.1| - 5.3e-15 55.3 6.7 6.9e-15 54.9 6.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein Gas_vesicle PF00741.18 gi|116753385|ref|YP_842503.1| - 5e-15 55.4 6.7 6.4e-15 55.0 6.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein Gas_vesicle PF00741.18 gi|116753386|ref|YP_842504.1| - 5e-15 55.4 6.7 6.4e-15 55.0 6.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein Gas_vesicle PF00741.18 gi|116753387|ref|YP_842505.1| - 5e-15 55.4 6.7 6.4e-15 55.0 6.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein Response_reg PF00072.24 gi|116753388|ref|YP_842506.1| - 3.1e-30 104.6 0.1 3.4e-30 104.5 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain LUD_dom PF02589.15 gi|116753388|ref|YP_842506.1| - 0.012 15.3 0.0 0.078 12.7 0.0 1.8 1 1 1 2 2 2 0 LUD domain B12-binding PF02310.19 gi|116753388|ref|YP_842506.1| - 0.075 13.1 0.0 0.091 12.8 0.0 1.2 1 0 0 1 1 1 0 B12 binding domain HATPase_c PF02518.26 gi|116753389|ref|YP_842507.1| - 3.4e-28 98.4 0.1 7.3e-28 97.3 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|116753389|ref|YP_842507.1| - 9.3e-18 64.0 0.1 9.3e-18 64.0 0.1 2.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|116753389|ref|YP_842507.1| - 4.2e-11 43.1 0.0 6.4e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|116753389|ref|YP_842507.1| - 3.3e-05 24.1 0.0 9.1e-05 22.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 gi|116753389|ref|YP_842507.1| - 5.3e-05 23.1 0.1 0.0022 17.9 0.0 2.5 2 0 0 2 2 2 1 GHKL domain PAS PF00989.25 gi|116753389|ref|YP_842507.1| - 7.8e-05 22.6 0.0 0.0002 21.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_10 PF13596.6 gi|116753389|ref|YP_842507.1| - 0.00094 19.7 0.0 0.0021 18.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|116753389|ref|YP_842507.1| - 0.023 14.5 0.1 0.046 13.5 0.1 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BORCS8 PF10167.9 gi|116753389|ref|YP_842507.1| - 0.056 13.4 1.2 0.21 11.5 0.1 2.4 2 0 0 2 2 2 0 BLOC-1-related complex sub-unit 8 Thiamine_BP PF01910.17 gi|116753389|ref|YP_842507.1| - 0.12 12.3 0.1 0.85 9.6 0.0 2.4 2 1 0 2 2 2 0 Thiamine-binding protein DASH_Duo1 PF08651.10 gi|116753389|ref|YP_842507.1| - 0.29 11.0 3.8 4.5 7.1 0.2 3.0 2 1 1 3 3 3 0 DASH complex subunit Duo1 Nod1 PF17114.5 gi|116753389|ref|YP_842507.1| - 0.38 10.9 2.3 3.5 7.8 0.0 2.5 2 1 0 2 2 2 0 Gef2-related medial cortical node protein Nod1 DUF835 PF05763.12 gi|116753390|ref|YP_842508.1| - 9.6e-27 93.4 0.0 1.3e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) PadR PF03551.14 gi|116753391|ref|YP_842509.1| - 7.3e-16 57.9 0.1 9.8e-16 57.5 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|116753391|ref|YP_842509.1| - 0.02 14.7 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.6 gi|116753391|ref|YP_842509.1| - 0.14 12.7 0.0 0.26 11.8 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain ATPase PF06745.13 gi|116753392|ref|YP_842510.1| - 3.6e-26 91.9 0.0 4.4e-26 91.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|116753392|ref|YP_842510.1| - 1.5e-05 24.7 0.0 2.1e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|116753392|ref|YP_842510.1| - 0.0063 15.2 0.0 0.0071 15.0 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein GvpG PF05120.12 gi|116753393|ref|YP_842511.1| - 2.6e-08 33.8 0.7 3e-08 33.6 0.7 1.1 1 0 0 1 1 1 1 Gas vesicle protein G Gas_vesicle PF00741.18 gi|116753394|ref|YP_842512.1| - 4.6e-16 58.7 5.8 6e-16 58.3 5.8 1.2 1 0 0 1 1 1 1 Gas vesicle protein Cys_rich_CPCC PF14206.6 gi|116753394|ref|YP_842512.1| - 0.0026 17.6 1.8 0.0026 17.6 1.8 1.5 2 0 0 2 2 2 1 Cysteine-rich CPCC DZR PF12773.7 gi|116753394|ref|YP_842512.1| - 0.038 14.0 1.6 0.059 13.4 1.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|116753394|ref|YP_842512.1| - 0.054 12.9 8.7 0.36 10.3 8.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|116753394|ref|YP_842512.1| - 0.17 11.9 4.3 0.18 11.8 0.2 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C4_Topoisom PF01396.19 gi|116753394|ref|YP_842512.1| - 0.27 11.1 5.7 0.88 9.4 0.6 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.6 gi|116753394|ref|YP_842512.1| - 3.2 7.6 8.3 1.3 8.9 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|116753394|ref|YP_842512.1| - 7.2 6.8 8.2 1.6 8.9 0.8 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Gas_vesicle PF00741.18 gi|116753395|ref|YP_842513.1| - 6.3e-16 58.2 8.0 6.3e-16 58.2 8.0 1.9 2 0 0 2 2 2 1 Gas vesicle protein GvpK PF05121.12 gi|116753396|ref|YP_842514.1| - 1.1e-17 63.9 4.9 1.2e-17 63.7 4.9 1.1 1 0 0 1 1 1 1 Gas vesicle protein K BAG PF02179.16 gi|116753396|ref|YP_842514.1| - 0.0062 16.9 0.6 0.0081 16.6 0.6 1.3 1 0 0 1 1 1 1 BAG domain Lig_C PF18330.1 gi|116753396|ref|YP_842514.1| - 0.057 13.4 0.8 0.071 13.1 0.8 1.1 1 0 0 1 1 1 0 Ligase Pab1020 C-terminal region GvpL_GvpF PF06386.11 gi|116753397|ref|YP_842515.1| - 6.1e-64 216.3 0.1 1.5e-62 211.7 0.0 2.0 2 0 0 2 2 2 1 Gas vesicle synthesis protein GvpL/GvpF YpjP PF14005.6 gi|116753397|ref|YP_842515.1| - 0.021 14.9 0.1 0.062 13.4 0.0 1.8 2 0 0 2 2 2 0 YpjP-like protein DUF45 PF01863.17 gi|116753397|ref|YP_842515.1| - 0.047 13.7 0.1 0.26 11.3 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF45 PRC PF05239.16 gi|116753400|ref|YP_842518.1| - 3.2e-14 52.8 0.8 3.7e-14 52.6 0.8 1.1 1 0 0 1 1 1 1 PRC-barrel domain AAA PF00004.29 gi|116753401|ref|YP_842519.1| - 3.6e-100 331.6 0.0 7.5e-49 165.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|116753401|ref|YP_842519.1| - 5.4e-37 125.4 2.2 1.1e-17 63.5 0.6 3.0 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|116753401|ref|YP_842519.1| - 1.9e-29 101.7 0.1 7.6e-29 99.7 0.1 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|116753401|ref|YP_842519.1| - 3.1e-16 58.9 0.1 2.9e-15 55.8 0.2 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|116753401|ref|YP_842519.1| - 1.2e-15 57.7 0.0 1.2e-06 28.4 0.0 3.4 2 2 1 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|116753401|ref|YP_842519.1| - 2.1e-14 54.3 0.0 1.9e-05 25.1 0.0 3.5 2 1 0 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|116753401|ref|YP_842519.1| - 1.7e-12 47.5 0.2 6.6e-05 22.9 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|116753401|ref|YP_842519.1| - 9.4e-12 45.4 0.0 3.2e-05 24.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|116753401|ref|YP_842519.1| - 4.9e-11 42.4 0.0 0.00013 21.3 0.0 2.7 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|116753401|ref|YP_842519.1| - 1.3e-09 38.4 0.4 0.0082 16.4 0.0 3.9 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|116753401|ref|YP_842519.1| - 6.6e-09 36.1 0.0 0.0013 18.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|116753401|ref|YP_842519.1| - 2.3e-08 34.7 0.0 0.0079 16.7 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_14 PF13173.6 gi|116753401|ref|YP_842519.1| - 3.1e-08 33.7 0.0 0.0067 16.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|116753401|ref|YP_842519.1| - 2.2e-07 30.8 0.1 0.02 14.6 0.0 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|116753401|ref|YP_842519.1| - 8.8e-07 28.5 0.2 0.048 13.0 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|116753401|ref|YP_842519.1| - 1.1e-06 28.3 0.0 0.047 13.2 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|116753401|ref|YP_842519.1| - 3.4e-06 27.4 0.0 0.13 12.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.6 gi|116753401|ref|YP_842519.1| - 5.5e-06 26.1 4.6 0.088 12.4 0.3 4.0 2 2 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|116753401|ref|YP_842519.1| - 7.4e-06 25.9 0.1 0.12 12.4 0.0 2.8 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_28 PF13521.6 gi|116753401|ref|YP_842519.1| - 7.5e-06 26.3 0.0 0.055 13.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|116753401|ref|YP_842519.1| - 7.9e-06 25.4 0.2 0.31 10.4 0.0 3.4 3 0 0 3 3 3 2 KaiC AAA_24 PF13479.6 gi|116753401|ref|YP_842519.1| - 8e-06 25.7 0.0 0.16 11.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|116753401|ref|YP_842519.1| - 1.2e-05 25.1 0.0 0.27 10.9 0.0 2.8 3 0 0 3 3 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.17 gi|116753401|ref|YP_842519.1| - 1.3e-05 24.4 0.1 0.11 11.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ATPase_2 PF01637.18 gi|116753401|ref|YP_842519.1| - 1.8e-05 24.8 0.0 0.22 11.4 0.0 3.4 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|116753401|ref|YP_842519.1| - 4.3e-05 23.5 0.0 0.4 10.7 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF2075 PF09848.9 gi|116753401|ref|YP_842519.1| - 6.3e-05 22.4 0.0 0.27 10.4 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|116753401|ref|YP_842519.1| - 6.6e-05 22.3 0.1 0.12 11.6 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_17 PF13207.6 gi|116753401|ref|YP_842519.1| - 0.00012 22.5 0.0 0.68 10.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|116753401|ref|YP_842519.1| - 0.00014 21.7 0.0 0.5 10.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|116753401|ref|YP_842519.1| - 0.00017 20.8 0.0 0.67 9.1 0.0 2.7 3 1 0 3 3 2 2 Protein of unknown function (DUF815) PhoH PF02562.16 gi|116753401|ref|YP_842519.1| - 0.00027 20.5 0.5 0.77 9.2 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein NB-ARC PF00931.22 gi|116753401|ref|YP_842519.1| - 0.00038 19.7 0.0 1.1 8.3 0.0 2.7 3 0 0 3 3 2 2 NB-ARC domain ABC_tran PF00005.27 gi|116753401|ref|YP_842519.1| - 0.00043 20.8 0.0 0.69 10.4 0.0 2.5 2 0 0 2 2 2 1 ABC transporter AAA_11 PF13086.6 gi|116753401|ref|YP_842519.1| - 0.00051 19.9 0.0 0.77 9.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|116753401|ref|YP_842519.1| - 0.00072 19.3 0.0 1.4 8.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.6 gi|116753401|ref|YP_842519.1| - 0.00085 19.4 0.0 0.89 9.7 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain IPT PF01745.16 gi|116753401|ref|YP_842519.1| - 0.00086 18.8 0.7 0.68 9.3 0.0 2.7 3 0 0 3 3 2 1 Isopentenyl transferase AAA_19 PF13245.6 gi|116753401|ref|YP_842519.1| - 0.0023 18.3 3.2 1.7 9.0 0.2 3.1 2 2 0 3 3 3 2 AAA domain Cytidylate_kin2 PF13189.6 gi|116753401|ref|YP_842519.1| - 0.0043 17.2 0.0 0.97 9.5 0.0 2.3 2 0 0 2 2 2 1 Cytidylate kinase-like family Bac_DnaA PF00308.18 gi|116753401|ref|YP_842519.1| - 0.0045 16.8 0.0 1.7 8.4 0.0 3.0 2 2 0 2 2 2 1 Bacterial dnaA protein Cytidylate_kin PF02224.18 gi|116753401|ref|YP_842519.1| - 0.0056 16.4 0.5 4.3 7.0 0.1 2.6 3 0 0 3 3 2 0 Cytidylate kinase Rad17 PF03215.15 gi|116753401|ref|YP_842519.1| - 0.006 16.5 0.0 3.1 7.7 0.0 2.4 2 0 0 2 2 2 1 Rad17 P-loop domain NACHT PF05729.12 gi|116753401|ref|YP_842519.1| - 0.0088 16.0 0.2 5 7.0 0.0 3.0 3 0 0 3 3 2 0 NACHT domain NTPase_1 PF03266.15 gi|116753401|ref|YP_842519.1| - 0.0096 15.8 0.1 3.4 7.5 0.0 2.8 2 1 1 3 3 2 0 NTPase ResIII PF04851.15 gi|116753401|ref|YP_842519.1| - 0.011 15.8 0.0 1.7 8.6 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TniB PF05621.11 gi|116753401|ref|YP_842519.1| - 0.013 15.0 0.0 7.4 5.9 0.0 3.0 4 0 0 4 4 3 0 Bacterial TniB protein SKI PF01202.22 gi|116753401|ref|YP_842519.1| - 0.013 15.6 0.0 6.8 6.8 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase KAP_NTPase PF07693.14 gi|116753401|ref|YP_842519.1| - 0.015 14.6 0.0 0.64 9.2 0.0 2.7 2 1 0 3 3 3 0 KAP family P-loop domain ATP-synt_ab PF00006.25 gi|116753401|ref|YP_842519.1| - 0.017 14.8 0.0 1.9 8.1 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Guanylate_kin PF00625.21 gi|116753401|ref|YP_842519.1| - 0.05 13.3 0.2 58 3.3 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase AAA_29 PF13555.6 gi|116753401|ref|YP_842519.1| - 0.065 13.0 0.0 17 5.2 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Hydin_ADK PF17213.3 gi|116753401|ref|YP_842519.1| - 0.07 13.4 0.1 19 5.4 0.0 2.5 3 0 0 3 3 2 0 Hydin Adenylate kinase-like domain CPT PF07931.12 gi|116753401|ref|YP_842519.1| - 0.087 12.7 0.0 14 5.4 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein YCII PF03795.14 gi|116753401|ref|YP_842519.1| - 0.1 13.0 0.0 0.47 10.9 0.0 2.1 2 0 0 2 2 1 0 YCII-related domain AFG1_ATPase PF03969.16 gi|116753401|ref|YP_842519.1| - 0.19 10.6 0.0 15 4.3 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase PAD_porph PF04371.15 gi|116753402|ref|YP_842520.1| - 2.3e-121 405.0 0.0 6.5e-121 403.5 0.0 1.8 3 0 0 3 3 3 1 Porphyromonas-type peptidyl-arginine deiminase CN_hydrolase PF00795.22 gi|116753402|ref|YP_842520.1| - 1e-58 198.7 0.0 1.4e-58 198.3 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Ribosomal_S3Ae PF01015.18 gi|116753403|ref|YP_842521.1| - 2.2e-68 229.8 0.2 2.5e-68 229.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DUF4460 PF14687.6 gi|116753403|ref|YP_842521.1| - 0.038 14.0 0.0 0.057 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4460) HisG PF01634.18 gi|116753404|ref|YP_842522.1| - 7.5e-45 152.8 0.0 1e-44 152.3 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|116753404|ref|YP_842522.1| - 6.7e-26 90.2 0.6 3.6e-25 87.9 0.1 2.2 2 0 0 2 2 2 1 HisG, C-terminal domain KH_7 PF17214.3 gi|116753406|ref|YP_842524.1| - 1.1e-29 102.1 2.3 2.1e-26 91.7 0.2 2.9 2 0 0 2 2 2 2 KH domain Beta-Casp PF10996.8 gi|116753406|ref|YP_842524.1| - 9.5e-25 87.0 0.0 2.2e-24 85.9 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|116753406|ref|YP_842524.1| - 1.3e-15 57.1 0.0 3.2e-15 55.8 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|116753406|ref|YP_842524.1| - 1.2e-13 51.6 0.3 1.4e-12 48.0 0.3 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|116753406|ref|YP_842524.1| - 1e-12 47.9 0.0 2.5e-12 46.6 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|116753406|ref|YP_842524.1| - 9.1e-10 38.4 0.0 3.4e-09 36.5 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|116753406|ref|YP_842524.1| - 0.00033 20.4 1.7 0.002 17.9 0.5 2.8 1 1 1 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|116753406|ref|YP_842524.1| - 0.00069 19.5 0.0 0.0022 17.9 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|116753406|ref|YP_842524.1| - 0.006 16.4 0.2 0.014 15.2 0.2 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|116753406|ref|YP_842524.1| - 0.054 13.3 0.1 0.2 11.5 0.1 2.0 1 0 0 1 1 1 0 KH domain DinI PF06183.13 gi|116753406|ref|YP_842524.1| - 0.088 13.2 0.2 6.7 7.1 0.0 3.1 2 0 0 2 2 2 0 DinI-like family Proteasome PF00227.26 gi|116753407|ref|YP_842525.1| - 2.2e-52 177.3 0.1 2.5e-52 177.1 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Ammonium_transp PF00909.21 gi|116753408|ref|YP_842526.1| - 7.7e-128 426.6 42.7 8.7e-128 426.4 42.7 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|116753409|ref|YP_842527.1| - 1.2e-32 112.5 1.0 1.4e-32 112.3 1.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II AcetylCoA_hyd_C PF13336.6 gi|116753410|ref|YP_842528.1| - 8.3e-61 204.4 0.0 1.3e-60 203.8 0.0 1.3 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 gi|116753410|ref|YP_842528.1| - 5.5e-41 140.7 0.0 3e-40 138.3 0.0 2.0 2 0 0 2 2 2 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.25 gi|116753410|ref|YP_842528.1| - 2.1e-11 44.1 0.0 4.3e-11 43.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|116753410|ref|YP_842528.1| - 3.2e-09 37.6 0.0 6e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|116753410|ref|YP_842528.1| - 1.1e-07 32.2 0.0 2.7e-07 30.9 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|116753410|ref|YP_842528.1| - 3.9e-07 30.0 0.1 9.2e-07 28.8 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|116753410|ref|YP_842528.1| - 4.7e-06 26.8 0.0 9.7e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|116753410|ref|YP_842528.1| - 2.4e-05 24.2 0.0 5.6e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein CoA_trans PF01144.23 gi|116753410|ref|YP_842528.1| - 8e-05 22.1 0.0 0.16 11.4 0.0 2.6 2 0 0 2 2 2 2 Coenzyme A transferase DeoRC PF00455.22 gi|116753410|ref|YP_842528.1| - 0.00039 20.4 0.1 0.0089 16.0 0.0 3.1 4 0 0 4 4 4 1 DeoR C terminal sensor domain Acetyltransf_CG PF14542.6 gi|116753410|ref|YP_842528.1| - 0.029 14.5 0.0 0.24 11.6 0.0 2.4 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|116753410|ref|YP_842528.1| - 0.039 13.7 0.0 0.071 12.8 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Mal_decarbox_Al PF16957.5 gi|116753410|ref|YP_842528.1| - 0.04 12.3 0.2 0.23 9.7 0.0 1.9 2 0 0 2 2 2 0 Malonate decarboxylase, alpha subunit, transporter TPR_1 PF00515.28 gi|116753411|ref|YP_842529.1| - 9.7e-85 275.2 1.8 5.7e-10 38.6 0.0 10.3 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_2 PF07719.17 gi|116753411|ref|YP_842529.1| - 3.4e-72 232.8 6.6 1.4e-08 34.2 0.0 10.4 11 0 0 11 11 10 10 Tetratricopeptide repeat TPR_11 PF13414.6 gi|116753411|ref|YP_842529.1| - 2.1e-58 193.8 4.9 1.9e-08 33.8 0.0 9.5 4 3 6 10 10 10 9 TPR repeat TPR_8 PF13181.6 gi|116753411|ref|YP_842529.1| - 1.8e-54 177.4 5.3 5.4e-06 26.2 0.1 10.9 11 0 0 11 11 11 10 Tetratricopeptide repeat TPR_16 PF13432.6 gi|116753411|ref|YP_842529.1| - 7.7e-51 170.5 13.2 2.4e-09 37.7 0.2 7.4 2 2 6 8 8 8 8 Tetratricopeptide repeat TPR_14 PF13428.6 gi|116753411|ref|YP_842529.1| - 1.3e-45 150.1 16.0 2.5e-05 24.7 0.2 9.4 2 2 7 9 9 9 9 Tetratricopeptide repeat TPR_17 PF13431.6 gi|116753411|ref|YP_842529.1| - 1.3e-44 147.4 0.1 0.00015 21.9 0.0 10.3 9 1 1 10 10 10 8 Tetratricopeptide repeat TPR_12 PF13424.6 gi|116753411|ref|YP_842529.1| - 1.3e-41 140.8 14.6 2.8e-09 37.1 0.2 8.4 4 3 3 7 7 7 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|116753411|ref|YP_842529.1| - 2e-38 130.7 1.0 2.1e-07 31.3 0.0 6.1 4 1 0 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|116753411|ref|YP_842529.1| - 1.1e-34 115.9 9.0 0.00026 20.8 0.0 10.3 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_9 PF13371.6 gi|116753411|ref|YP_842529.1| - 3.3e-32 110.5 16.7 1.3e-07 31.6 2.0 6.9 3 2 5 8 8 8 7 Tetratricopeptide repeat TPR_6 PF13174.6 gi|116753411|ref|YP_842529.1| - 8.1e-28 95.2 2.2 0.019 15.6 0.0 10.3 10 0 0 10 10 10 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|116753411|ref|YP_842529.1| - 1.5e-24 86.0 2.5 9.2e-06 25.8 0.0 5.4 2 2 4 6 6 6 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|116753411|ref|YP_842529.1| - 1e-18 66.5 15.2 0.053 13.4 0.1 9.5 9 0 0 9 9 9 5 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|116753411|ref|YP_842529.1| - 3.5e-18 65.4 0.7 0.051 13.7 0.0 8.0 8 0 0 8 8 8 4 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.6 gi|116753411|ref|YP_842529.1| - 5.3e-15 55.4 0.8 0.0019 17.5 0.0 5.9 3 2 4 7 7 7 3 Tetratricopeptide repeat BTAD PF03704.17 gi|116753411|ref|YP_842529.1| - 7.4e-15 55.6 10.8 0.015 15.8 0.0 5.8 2 2 3 6 6 6 4 Bacterial transcriptional activator domain MIT PF04212.18 gi|116753411|ref|YP_842529.1| - 9.5e-11 41.6 16.7 0.38 10.8 0.0 8.1 7 1 1 8 8 8 2 MIT (microtubule interacting and transport) domain TPR_3 PF07720.12 gi|116753411|ref|YP_842529.1| - 1.4e-10 41.0 0.9 0.95 9.5 0.0 6.8 7 0 0 7 7 6 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|116753411|ref|YP_842529.1| - 4e-10 39.9 5.1 0.073 13.1 0.1 6.5 2 2 4 6 6 6 1 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|116753411|ref|YP_842529.1| - 3.3e-09 36.2 0.0 0.0025 16.8 0.0 4.4 1 1 3 4 4 4 2 NMDA receptor-regulated protein 1 TPR_20 PF14561.6 gi|116753411|ref|YP_842529.1| - 3.4e-08 33.7 0.0 0.83 10.0 0.0 5.7 3 2 1 6 6 6 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|116753411|ref|YP_842529.1| - 1.2e-07 31.6 6.1 1.7 9.5 0.1 7.9 8 1 1 9 9 6 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|116753411|ref|YP_842529.1| - 7.3e-07 28.9 0.1 0.47 9.8 0.0 4.9 1 1 3 5 5 5 1 Coatomer epsilon subunit DUF5113 PF17140.4 gi|116753411|ref|YP_842529.1| - 1e-06 28.7 0.1 22 4.8 0.0 7.2 6 2 2 8 8 8 0 Domain of unknown function (DUF5113) TPR_5 PF12688.7 gi|116753411|ref|YP_842529.1| - 7.4e-06 26.2 1.0 0.3 11.3 0.0 4.6 3 1 1 5 5 4 1 Tetratrico peptide repeat PPR PF01535.20 gi|116753411|ref|YP_842529.1| - 8.2e-06 25.7 7.2 14 6.2 0.0 7.5 7 0 0 7 7 7 0 PPR repeat SRP_TPR_like PF17004.5 gi|116753411|ref|YP_842529.1| - 2.4e-05 24.3 0.0 0.14 12.2 0.0 4.0 4 2 0 4 4 4 1 Putative TPR-like repeat TOM20_plant PF06552.12 gi|116753411|ref|YP_842529.1| - 7e-05 22.7 0.4 23 4.6 0.0 6.1 3 2 2 5 5 5 0 Plant specific mitochondrial import receptor subunit TOM20 DUF627 PF04781.12 gi|116753411|ref|YP_842529.1| - 7.9e-05 22.6 0.1 2.4 8.2 0.0 4.2 3 3 1 4 4 4 1 Protein of unknown function (DUF627) Alkyl_sulf_dimr PF14863.6 gi|116753411|ref|YP_842529.1| - 0.0002 21.9 0.0 14 6.2 0.0 4.7 1 1 1 4 4 4 0 Alkyl sulfatase dimerisation TPR_21 PF09976.9 gi|116753411|ref|YP_842529.1| - 0.00037 20.3 0.1 4.1 7.1 0.0 3.8 2 1 1 4 4 4 0 Tetratricopeptide repeat-like domain PknG_TPR PF16918.5 gi|116753411|ref|YP_842529.1| - 0.0011 17.8 0.0 0.77 8.4 0.0 3.1 1 1 2 3 3 3 1 Protein kinase G tetratricopeptide repeat RPN7 PF10602.9 gi|116753411|ref|YP_842529.1| - 0.0012 18.6 3.4 13 5.5 0.0 5.9 3 2 3 7 7 7 0 26S proteasome subunit RPN7 NRBF2_MIT PF17169.4 gi|116753411|ref|YP_842529.1| - 0.0021 18.3 10.3 13 6.1 0.0 7.0 4 3 4 8 8 7 0 MIT domain of nuclear receptor-binding factor 2 ChAPs PF09295.10 gi|116753411|ref|YP_842529.1| - 0.0022 17.1 0.0 0.25 10.3 0.0 3.3 3 1 1 4 4 4 1 ChAPs (Chs5p-Arf1p-binding proteins) FAT PF02259.23 gi|116753411|ref|YP_842529.1| - 0.0038 16.5 0.0 1.2 8.3 0.0 3.3 1 1 1 2 2 2 1 FAT domain MAS20 PF02064.15 gi|116753411|ref|YP_842529.1| - 0.0064 16.6 0.1 8.7 6.5 0.0 3.3 2 1 1 3 3 3 0 MAS20 protein import receptor SHNi-TPR PF10516.9 gi|116753411|ref|YP_842529.1| - 0.014 14.9 1.7 27 4.3 0.0 4.6 6 0 0 6 6 5 0 SHNi-TPR PPTA PF01239.22 gi|116753411|ref|YP_842529.1| - 0.015 15.0 0.0 24 4.9 0.0 5.2 8 0 0 8 8 5 0 Protein prenyltransferase alpha subunit repeat TPR_MalT PF17874.1 gi|116753411|ref|YP_842529.1| - 0.019 14.4 0.2 6.3 6.1 0.0 4.1 3 2 1 4 4 4 0 MalT-like TPR region Type_III_YscG PF09477.10 gi|116753411|ref|YP_842529.1| - 0.024 14.7 0.1 11 6.1 0.0 2.9 3 0 0 3 3 3 0 Bacterial type II secretion system chaperone protein (type_III_yscG) Wzy_C_2 PF11846.8 gi|116753411|ref|YP_842529.1| - 0.051 13.5 0.6 52 3.7 0.0 4.2 2 1 3 6 6 6 0 Virulence factor membrane-bound polymerase, C-terminal DUF1896 PF08989.10 gi|116753411|ref|YP_842529.1| - 0.12 12.4 1.3 37 4.4 0.0 3.9 3 2 1 4 4 4 0 Domain of unknown function (DUF1896) Ubiq-assoc PF09145.10 gi|116753411|ref|YP_842529.1| - 0.17 11.9 2.2 9.6 6.3 0.0 3.6 3 0 0 3 3 2 0 Ubiquitin-associated HTH_Bact PF18768.1 gi|116753411|ref|YP_842529.1| - 2.4 7.8 4.8 98 2.7 0.0 5.1 6 0 0 6 6 6 0 Helix-turn-helix bacterial domain DUF5342 PF17277.2 gi|116753412|ref|YP_842530.1| - 0.13 12.6 0.0 0.41 11.0 0.0 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5342) Pribosyltran PF00156.27 gi|116753413|ref|YP_842531.1| - 1.8e-20 73.1 0.6 2.7e-20 72.5 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|116753413|ref|YP_842531.1| - 0.00054 19.5 0.1 0.0008 18.9 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 gi|116753413|ref|YP_842531.1| - 0.0011 19.1 0.2 0.0018 18.3 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.6 gi|116753413|ref|YP_842531.1| - 0.0026 17.3 0.2 0.083 12.4 0.2 2.1 1 1 1 2 2 2 1 Phosphoribosyl transferase HTH_23 PF13384.6 gi|116753413|ref|YP_842531.1| - 0.017 14.9 0.0 0.04 13.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.12 gi|116753413|ref|YP_842531.1| - 0.018 15.0 0.2 0.047 13.6 0.2 1.7 1 0 0 1 1 1 0 HTH domain GerE PF00196.19 gi|116753413|ref|YP_842531.1| - 0.037 13.6 0.0 0.083 12.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_7 PF02796.15 gi|116753413|ref|YP_842531.1| - 0.05 13.7 0.1 0.1 12.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase GntR PF00392.21 gi|116753413|ref|YP_842531.1| - 0.078 12.6 0.3 0.34 10.6 0.1 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Sigma70_r4 PF04545.16 gi|116753413|ref|YP_842531.1| - 0.17 11.4 0.1 0.56 9.8 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 PIN_6 PF17146.4 gi|116753414|ref|YP_842532.1| - 2e-15 57.0 0.2 3e-15 56.5 0.2 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN PF01850.21 gi|116753414|ref|YP_842532.1| - 9.6e-05 22.9 0.4 0.00013 22.5 0.4 1.2 1 0 0 1 1 1 1 PIN domain PIN_5 PF08745.11 gi|116753414|ref|YP_842532.1| - 0.00043 19.8 0.5 0.0012 18.3 0.2 1.8 1 1 0 1 1 1 1 PINc domain ribonuclease Prok-RING_1 PF14446.6 gi|116753414|ref|YP_842532.1| - 0.0015 18.4 2.1 0.0027 17.6 2.1 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 RecR PF02132.15 gi|116753414|ref|YP_842532.1| - 0.0045 16.5 0.1 0.016 14.8 0.1 2.0 1 0 0 1 1 1 1 RecR protein DZR PF12773.7 gi|116753414|ref|YP_842532.1| - 0.087 12.9 1.7 0.23 11.5 1.6 1.7 1 1 1 2 2 2 0 Double zinc ribbon DUF5615 PF18480.1 gi|116753414|ref|YP_842532.1| - 0.12 12.1 0.1 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) DUF2256 PF10013.9 gi|116753414|ref|YP_842532.1| - 0.3 11.2 3.7 9.1 6.5 0.4 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-ribbon_3 PF13248.6 gi|116753414|ref|YP_842532.1| - 0.63 9.5 6.0 2.6 7.6 0.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|116753414|ref|YP_842532.1| - 0.76 9.7 6.8 1.8 8.5 6.8 1.6 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|116753414|ref|YP_842532.1| - 0.83 9.8 5.9 9.2 6.5 0.4 2.6 2 1 1 3 3 3 0 Zinc ribbon domain zf-C2HC_2 PF13913.6 gi|116753414|ref|YP_842532.1| - 1 9.4 6.9 0.18 11.8 1.1 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DNA_ligase_ZBD PF03119.16 gi|116753414|ref|YP_842532.1| - 1 9.4 5.9 2.5 8.2 1.3 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.14 gi|116753414|ref|YP_842532.1| - 1.4 8.8 6.6 3.5 7.5 0.4 2.6 1 1 1 2 2 2 0 Rad50 zinc hook motif FdhE PF04216.12 gi|116753414|ref|YP_842532.1| - 2.7 7.8 5.0 85 2.9 5.0 2.0 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-NADH-PPase PF09297.11 gi|116753414|ref|YP_842532.1| - 6.1 6.6 8.0 11 5.7 0.4 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CbiQ PF02361.16 gi|116753415|ref|YP_842533.1| - 2.3e-33 115.7 13.8 4.1e-33 114.9 13.8 1.3 1 0 0 1 1 1 1 Cobalt transport protein Bunya_G2 PF03563.13 gi|116753415|ref|YP_842533.1| - 6.2 6.0 7.4 11 5.2 7.4 1.3 1 0 0 1 1 1 0 Bunyavirus glycoprotein G2 ABC_tran PF00005.27 gi|116753416|ref|YP_842534.1| - 4.1e-32 111.6 0.0 6.1e-32 111.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116753416|ref|YP_842534.1| - 1.4e-17 64.5 0.6 4.3e-10 39.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|116753416|ref|YP_842534.1| - 3.2e-08 33.3 0.0 7.1e-08 32.1 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|116753416|ref|YP_842534.1| - 3.5e-08 33.5 0.0 0.0022 17.8 0.1 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|116753416|ref|YP_842534.1| - 8.2e-06 25.5 0.0 1.7e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|116753416|ref|YP_842534.1| - 0.0046 17.5 0.0 0.0064 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|116753416|ref|YP_842534.1| - 0.026 14.9 0.0 0.036 14.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|116753416|ref|YP_842534.1| - 0.045 14.0 0.0 0.22 11.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|116753416|ref|YP_842534.1| - 0.05 13.8 0.0 0.62 10.3 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|116753416|ref|YP_842534.1| - 0.058 13.3 0.1 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 gi|116753416|ref|YP_842534.1| - 0.11 12.4 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|116753416|ref|YP_842534.1| - 0.14 12.1 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Pup PF05639.11 gi|116753416|ref|YP_842534.1| - 0.2 12.6 0.5 0.44 11.5 0.5 1.5 1 0 0 1 1 1 0 Pup-like protein MMR_HSR1_Xtn PF16897.5 gi|116753417|ref|YP_842535.1| - 7.4e-29 99.9 0.0 1.4e-28 99.0 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain TGS PF02824.21 gi|116753417|ref|YP_842535.1| - 8.1e-20 70.6 0.0 1.9e-19 69.5 0.0 1.7 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.23 gi|116753417|ref|YP_842535.1| - 2.7e-06 27.4 0.0 6.3e-06 26.2 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|116753417|ref|YP_842535.1| - 0.0002 21.3 0.1 0.0064 16.4 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase FeoB_N PF02421.18 gi|116753417|ref|YP_842535.1| - 0.00028 20.4 0.0 0.014 15.0 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B MeaB PF03308.16 gi|116753417|ref|YP_842535.1| - 0.00061 18.9 0.1 0.9 8.5 0.2 2.4 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|116753417|ref|YP_842535.1| - 0.0019 18.7 0.9 0.0047 17.5 0.0 2.1 3 0 0 3 3 2 1 ABC transporter GTP_EFTU PF00009.27 gi|116753417|ref|YP_842535.1| - 0.0061 16.1 0.2 1.1 8.8 0.0 3.0 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_PrkA PF08298.11 gi|116753417|ref|YP_842535.1| - 0.018 14.0 0.0 0.027 13.4 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain cobW PF02492.19 gi|116753417|ref|YP_842535.1| - 0.02 14.5 0.1 0.064 12.8 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|116753417|ref|YP_842535.1| - 0.024 14.4 0.4 0.085 12.6 0.6 1.9 2 1 0 2 2 2 0 AAA domain YchF-GTPase_C PF06071.13 gi|116753417|ref|YP_842535.1| - 0.032 14.4 0.6 1.1 9.5 0.0 2.8 2 1 0 2 2 1 0 Protein of unknown function (DUF933) AAA_22 PF13401.6 gi|116753417|ref|YP_842535.1| - 0.033 14.5 0.0 0.072 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|116753417|ref|YP_842535.1| - 0.037 14.1 1.8 0.81 9.7 0.0 2.4 2 0 0 2 2 2 0 Dynamin family AAA_16 PF13191.6 gi|116753417|ref|YP_842535.1| - 0.04 14.3 0.6 0.097 13.0 0.5 2.0 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|116753417|ref|YP_842535.1| - 0.04 13.3 0.0 0.071 12.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Roc PF08477.13 gi|116753417|ref|YP_842535.1| - 0.05 13.8 0.1 0.38 11.0 0.0 2.1 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|116753417|ref|YP_842535.1| - 0.057 13.2 0.0 0.61 9.8 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRPRB PF09439.10 gi|116753417|ref|YP_842535.1| - 0.058 12.8 1.6 0.073 12.5 0.0 1.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.6 gi|116753417|ref|YP_842535.1| - 0.063 13.0 0.6 0.13 12.0 0.6 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TsaE PF02367.17 gi|116753417|ref|YP_842535.1| - 0.064 13.3 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|116753417|ref|YP_842535.1| - 0.068 13.3 0.6 0.17 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain MnmE_helical PF12631.7 gi|116753417|ref|YP_842535.1| - 0.1 12.7 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 MnmE helical domain Spore_IV_A PF09547.10 gi|116753417|ref|YP_842535.1| - 0.14 11.1 0.4 0.26 10.2 0.4 1.3 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) AFG1_ATPase PF03969.16 gi|116753417|ref|YP_842535.1| - 0.25 10.2 1.2 0.4 9.5 0.2 1.7 2 0 0 2 2 2 0 AFG1-like ATPase AAA_28 PF13521.6 gi|116753417|ref|YP_842535.1| - 0.72 10.1 0.0 0.72 10.1 0.0 2.5 3 0 0 3 3 3 0 AAA domain DUF1192 PF06698.11 gi|116753417|ref|YP_842535.1| - 8.1 6.6 14.2 3.3 7.8 3.2 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) CMD PF02627.20 gi|116753418|ref|YP_842536.1| - 8.3e-16 57.8 0.0 1.2e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family tRNA_deacylase PF04414.12 gi|116753419|ref|YP_842537.1| - 9.9e-57 191.8 0.0 1.2e-56 191.5 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase MarR PF01047.22 gi|116753420|ref|YP_842538.1| - 0.0012 18.7 0.0 0.29 11.1 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|116753420|ref|YP_842538.1| - 0.0034 16.9 0.0 0.021 14.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|116753420|ref|YP_842538.1| - 0.0057 16.7 0.0 0.84 9.7 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix TrmB PF01978.19 gi|116753420|ref|YP_842538.1| - 0.017 15.0 0.0 3.3 7.7 0.0 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|116753420|ref|YP_842538.1| - 0.019 14.8 0.0 1 9.3 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|116753420|ref|YP_842538.1| - 0.021 14.8 0.0 12 6.0 0.0 2.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|116753420|ref|YP_842538.1| - 0.12 12.6 0.0 0.27 11.4 0.0 1.7 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF1013 PF06242.11 gi|116753420|ref|YP_842538.1| - 0.23 11.5 0.0 24 5.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1013) PurS PF02700.14 gi|116753421|ref|YP_842539.1| - 2.6e-11 43.5 0.2 2.7e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 Phosphoribosylformylglycinamidine (FGAM) synthase Prophage_tail PF06605.11 gi|116753421|ref|YP_842539.1| - 0.099 11.8 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Prophage endopeptidase tail GATase_5 PF13507.6 gi|116753422|ref|YP_842540.1| - 7.1e-52 176.1 0.0 8.2e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|116753422|ref|YP_842540.1| - 2e-09 37.5 0.1 3e-09 36.9 0.1 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|116753422|ref|YP_842540.1| - 1.4e-07 31.3 0.0 3.5e-07 30.0 0.0 1.7 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|116753422|ref|YP_842540.1| - 2.6e-06 27.3 0.0 4.3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family SNO PF01174.19 gi|116753422|ref|YP_842540.1| - 1.3e-05 25.2 0.0 2.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|116753422|ref|YP_842540.1| - 0.0055 16.5 0.0 0.0085 15.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 AIRS_C PF02769.22 gi|116753423|ref|YP_842541.1| - 5.6e-37 127.3 0.0 1.4e-17 64.3 0.0 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|116753423|ref|YP_842541.1| - 7.6e-37 125.9 0.3 2e-17 63.6 0.3 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|116753423|ref|YP_842541.1| - 1.2e-13 51.4 0.0 4.9e-13 49.4 0.0 2.0 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain GDPD PF03009.17 gi|116753425|ref|YP_842543.1| - 1.5e-38 133.0 0.0 1.2e-26 94.0 0.0 2.1 1 1 0 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family zf-like PF04071.12 gi|116753425|ref|YP_842543.1| - 1.6e-25 88.8 6.7 2.9e-25 88.0 6.7 1.3 1 0 0 1 1 1 1 Cysteine-rich small domain GDPD_2 PF13653.6 gi|116753425|ref|YP_842543.1| - 0.0012 19.2 0.4 0.003 18.0 0.4 1.7 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family SepSecS PF05889.13 gi|116753426|ref|YP_842544.1| - 5e-48 163.7 0.0 7.8e-48 163.1 0.0 1.3 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|116753426|ref|YP_842544.1| - 1.6e-12 47.1 0.0 2.2e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|116753426|ref|YP_842544.1| - 8.3e-10 38.4 0.0 1.2e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.20 gi|116753426|ref|YP_842544.1| - 0.0014 17.4 0.0 0.0021 16.9 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Cys_Met_Meta_PP PF01053.20 gi|116753426|ref|YP_842544.1| - 0.0028 16.3 0.0 0.0041 15.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|116753426|ref|YP_842544.1| - 0.0077 15.6 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|116753426|ref|YP_842544.1| - 0.032 13.5 0.0 0.043 13.1 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase DRTGG PF07085.12 gi|116753427|ref|YP_842545.1| - 0.068 13.0 0.1 0.09 12.6 0.1 1.1 1 0 0 1 1 1 0 DRTGG domain Herpes_UL33 PF03581.13 gi|116753427|ref|YP_842545.1| - 0.084 13.3 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus UL33-like protein CbiX PF01903.17 gi|116753428|ref|YP_842546.1| - 1e-25 90.1 0.0 1.2e-25 89.9 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|116753428|ref|YP_842546.1| - 3.2e-05 23.4 0.0 3.8e-05 23.1 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Mur_ligase_M PF08245.12 gi|116753429|ref|YP_842547.1| - 7.1e-07 29.4 0.0 1.1e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Oxidored_nitro PF00148.19 gi|116753430|ref|YP_842548.1| - 5.6e-20 71.4 0.1 1e-19 70.6 0.0 1.4 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase SHOCT PF09851.9 gi|116753430|ref|YP_842548.1| - 0.011 15.5 0.8 0.025 14.3 0.8 1.7 1 0 0 1 1 1 0 Short C-terminal domain DUF1805 PF08827.11 gi|116753431|ref|YP_842549.1| - 3.7e-23 81.6 0.0 5e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) IMS PF00817.20 gi|116753431|ref|YP_842549.1| - 0.0031 17.5 0.0 0.0031 17.5 0.0 1.1 1 0 0 1 1 1 1 impB/mucB/samB family Radical_SAM PF04055.21 gi|116753432|ref|YP_842550.1| - 6.9e-13 49.3 0.0 1.1e-12 48.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|116753432|ref|YP_842550.1| - 0.038 14.2 0.0 0.1 12.9 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Sulfolobus_pRN PF05584.11 gi|116753432|ref|YP_842550.1| - 0.047 13.7 0.1 0.099 12.7 0.1 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HMGL-like PF00682.19 gi|116753433|ref|YP_842551.1| - 5e-64 216.4 0.7 9.5e-64 215.5 0.7 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|116753433|ref|YP_842551.1| - 3.8e-33 114.2 0.6 7.8e-33 113.2 0.6 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF5486 PF17588.2 gi|116753433|ref|YP_842551.1| - 0.0084 16.0 0.1 0.057 13.3 0.1 2.2 2 0 0 2 2 2 1 Family of unknown function (DUF5486) TPP_enzyme_N PF02776.18 gi|116753434|ref|YP_842552.1| - 1.3e-58 197.4 0.0 2.8e-58 196.4 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|116753434|ref|YP_842552.1| - 9.6e-55 184.1 0.2 1.6e-54 183.3 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|116753434|ref|YP_842552.1| - 3.9e-52 176.1 0.0 1.5e-51 174.2 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|116753434|ref|YP_842552.1| - 0.028 14.2 0.5 0.061 13.1 0.5 1.5 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALS_ss_C PF10369.9 gi|116753435|ref|YP_842553.1| - 5.5e-30 103.4 1.9 5.5e-30 103.4 1.9 1.9 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|116753435|ref|YP_842553.1| - 7e-19 67.4 1.0 1.4e-17 63.3 0.0 2.6 2 1 0 2 2 2 1 ACT domain ACT PF01842.25 gi|116753435|ref|YP_842553.1| - 1.4e-14 53.5 0.5 3.3e-14 52.3 0.1 1.8 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|116753435|ref|YP_842553.1| - 8.6e-09 35.9 2.3 1.2e-08 35.5 0.3 2.0 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|116753435|ref|YP_842553.1| - 7.6e-05 22.6 0.8 0.63 10.1 0.2 3.3 2 2 0 2 2 2 2 ACT domain NIL PF09383.10 gi|116753435|ref|YP_842553.1| - 0.00031 20.5 0.3 1.2 9.0 0.0 2.6 3 0 0 3 3 3 2 NIL domain Acylphosphatase PF00708.18 gi|116753435|ref|YP_842553.1| - 0.012 15.9 0.2 6.7 7.2 0.0 2.3 2 0 0 2 2 2 0 Acylphosphatase Saccharop_dh_N PF04455.12 gi|116753435|ref|YP_842553.1| - 0.026 14.9 0.3 0.12 12.8 0.1 2.1 1 1 2 3 3 3 0 LOR/SDH bifunctional enzyme conserved region DUF2096 PF09869.9 gi|116753435|ref|YP_842553.1| - 0.057 13.5 1.5 0.12 12.4 0.5 1.7 1 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2096) SCO1-SenC PF02630.14 gi|116753435|ref|YP_842553.1| - 0.1 12.5 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 SCO1/SenC IlvN PF07991.12 gi|116753436|ref|YP_842554.1| - 3.1e-74 248.0 0.0 4.6e-74 247.5 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|116753436|ref|YP_842554.1| - 5.5e-62 208.3 1.1 8e-62 207.8 1.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|116753436|ref|YP_842554.1| - 4.2e-08 32.8 0.0 6.6e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|116753436|ref|YP_842554.1| - 1.6e-05 25.1 0.0 3.8e-05 23.9 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|116753436|ref|YP_842554.1| - 0.00054 20.1 0.0 0.00097 19.2 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|116753436|ref|YP_842554.1| - 0.00085 19.9 0.0 0.0019 18.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|116753436|ref|YP_842554.1| - 0.11 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrmB PF01978.19 gi|116753437|ref|YP_842555.1| - 0.0002 21.2 0.1 0.00042 20.1 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|116753437|ref|YP_842555.1| - 0.0055 16.8 0.1 0.011 15.8 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|116753437|ref|YP_842555.1| - 0.014 15.9 1.6 0.021 15.3 0.0 2.1 3 0 0 3 3 3 0 Winged helix DNA-binding domain Ferritin PF00210.24 gi|116753437|ref|YP_842555.1| - 0.016 15.1 0.1 0.023 14.6 0.1 1.2 1 0 0 1 1 1 0 Ferritin-like domain HTH_45 PF14947.6 gi|116753437|ref|YP_842555.1| - 0.052 13.5 0.0 0.081 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix FtsK_gamma PF09397.10 gi|116753437|ref|YP_842555.1| - 0.065 13.0 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Ftsk gamma domain DUF4364 PF14277.6 gi|116753437|ref|YP_842555.1| - 0.098 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF2092 PF09865.9 gi|116753438|ref|YP_842556.1| - 0.035 13.5 0.0 0.15 11.4 0.0 1.9 1 1 0 1 1 1 0 Predicted periplasmic protein (DUF2092) Rubredoxin PF00301.20 gi|116753439|ref|YP_842557.1| - 4.2e-26 90.7 6.2 4.6e-26 90.6 6.2 1.0 1 0 0 1 1 1 1 Rubredoxin Zn-ribbon_8 PF09723.10 gi|116753439|ref|YP_842557.1| - 0.0017 18.4 3.0 0.029 14.5 3.0 2.1 1 1 0 1 1 1 1 Zinc ribbon domain PHD_4 PF16866.5 gi|116753439|ref|YP_842557.1| - 0.0035 17.4 0.2 0.0045 17.1 0.2 1.2 1 0 0 1 1 1 1 PHD-finger TF_Zn_Ribbon PF08271.12 gi|116753439|ref|YP_842557.1| - 0.0044 16.5 1.9 1.1 8.8 0.0 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|116753439|ref|YP_842557.1| - 0.011 15.5 1.1 0.82 9.5 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-RanBP PF00641.18 gi|116753439|ref|YP_842557.1| - 0.013 14.8 1.7 0.12 11.7 0.2 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Prok-RING_1 PF14446.6 gi|116753439|ref|YP_842557.1| - 0.018 15.0 1.0 0.43 10.6 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Zn_ribbon_SprT PF17283.2 gi|116753439|ref|YP_842557.1| - 0.025 14.5 1.9 2.4 8.1 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|116753439|ref|YP_842557.1| - 0.031 14.0 0.7 0.65 9.8 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein HalOD2 PF18547.1 gi|116753439|ref|YP_842557.1| - 0.053 13.4 1.0 0.68 9.9 1.0 2.0 1 1 0 1 1 1 0 Halobacterial output domain 2 Desulfoferrod_N PF06397.12 gi|116753439|ref|YP_842557.1| - 0.054 13.1 0.6 0.054 13.1 0.6 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|116753439|ref|YP_842557.1| - 0.057 13.3 0.6 0.65 10.0 0.6 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|116753439|ref|YP_842557.1| - 0.059 13.0 1.8 0.8 9.3 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Nudix_N_2 PF14803.6 gi|116753439|ref|YP_842557.1| - 0.078 12.9 2.7 3.8 7.5 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal HypA PF01155.19 gi|116753439|ref|YP_842557.1| - 0.11 12.5 0.1 0.13 12.3 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|116753439|ref|YP_842557.1| - 0.12 12.4 4.3 3.9 7.6 0.7 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|116753439|ref|YP_842557.1| - 0.15 11.5 5.0 0.42 10.1 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.14 gi|116753439|ref|YP_842557.1| - 0.16 12.0 3.6 2.9 7.9 3.7 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-C2H2 PF00096.26 gi|116753439|ref|YP_842557.1| - 0.17 12.4 2.5 3.5 8.3 0.5 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|116753439|ref|YP_842557.1| - 0.19 12.2 1.8 15 6.2 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_2 PF13240.6 gi|116753439|ref|YP_842557.1| - 0.21 11.4 4.7 2.4 8.0 0.7 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|116753439|ref|YP_842557.1| - 0.24 12.3 1.7 7.5 7.7 0.3 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2_6 PF13912.6 gi|116753439|ref|YP_842557.1| - 0.32 11.1 2.1 7.5 6.7 0.6 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin_2 PF18073.1 gi|116753439|ref|YP_842557.1| - 0.69 9.7 7.0 2 8.2 1.1 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain VATC PF18716.1 gi|116753439|ref|YP_842557.1| - 2.9 7.8 5.3 1.3 8.9 1.1 2.2 1 1 1 2 2 2 0 Vms1-associating treble clef domain Ferritin PF00210.24 gi|116753440|ref|YP_842558.1| - 2.5e-44 150.6 0.3 2.9e-44 150.4 0.3 1.0 1 0 0 1 1 1 1 Ferritin-like domain Acid_phosphat_B PF03767.14 gi|116753440|ref|YP_842558.1| - 0.074 12.6 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Rubrerythrin PF02915.17 gi|116753440|ref|YP_842558.1| - 0.084 13.3 0.1 0.12 12.8 0.1 1.4 1 1 0 1 1 1 0 Rubrerythrin RNase_Zc3h12a_2 PF14626.6 gi|116753441|ref|YP_842559.1| - 0.085 13.1 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain Ribosomal_S13_N PF08069.12 gi|116753442|ref|YP_842560.1| - 1.7e-24 85.6 0.3 3.7e-24 84.5 0.3 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|116753442|ref|YP_842560.1| - 1.7e-09 37.7 0.5 5.5e-09 36.1 0.5 1.8 1 1 0 1 1 1 1 Ribosomal protein S15 WRNPLPNID PF15017.6 gi|116753442|ref|YP_842560.1| - 0.14 13.1 0.0 0.22 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative WW-binding domain and destruction box DHHA1 PF02272.19 gi|116753443|ref|YP_842561.1| - 4.1e-15 56.4 0.1 7.9e-15 55.5 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|116753443|ref|YP_842561.1| - 0.0046 17.2 0.0 0.0082 16.4 0.0 1.4 1 0 0 1 1 1 1 DHH family Pcc1 PF09341.10 gi|116753444|ref|YP_842562.1| - 0.055 13.6 0.0 0.065 13.4 0.0 1.1 1 0 0 1 1 1 0 Transcription factor Pcc1 tRNA_bind_4 PF18490.1 gi|116753445|ref|YP_842563.1| - 1.9e-55 187.0 0.0 2.7e-55 186.6 0.0 1.2 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|116753445|ref|YP_842563.1| - 1.6e-09 38.0 0.0 2.6e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|116753445|ref|YP_842563.1| - 0.017 14.6 0.0 0.032 13.7 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) AMMECR1 PF01871.17 gi|116753446|ref|YP_842564.1| - 1.3e-49 168.0 0.0 1.5e-49 167.8 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 DUF1614 PF07758.11 gi|116753447|ref|YP_842565.1| - 1.3e-45 155.4 13.2 2.1e-45 154.8 13.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) DUF4231 PF14015.6 gi|116753447|ref|YP_842565.1| - 0.53 10.8 2.9 0.42 11.1 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DUF116 PF01976.17 gi|116753448|ref|YP_842566.1| - 2.4e-47 160.3 0.0 2.8e-47 160.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 DUF373 PF04123.13 gi|116753449|ref|YP_842567.1| - 4.4e-126 420.9 0.6 5.1e-126 420.6 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Aldedh PF00171.22 gi|116753449|ref|YP_842567.1| - 0.1 11.1 0.1 0.2 10.1 0.0 1.5 2 0 0 2 2 2 0 Aldehyde dehydrogenase family MutS_II PF05188.17 gi|116753449|ref|YP_842567.1| - 0.19 12.0 0.1 0.35 11.1 0.1 1.3 1 0 0 1 1 1 0 MutS domain II Vut_1 PF02592.15 gi|116753450|ref|YP_842568.1| - 2.4e-36 125.3 13.3 4e-36 124.6 13.3 1.3 1 0 0 1 1 1 1 Putative vitamin uptake transporter TGT PF01702.18 gi|116753451|ref|YP_842569.1| - 1.5e-112 376.3 0.0 1.7e-111 372.8 0.0 1.9 1 1 0 1 1 1 1 Queuine tRNA-ribosyltransferase FMN_red PF03358.15 gi|116753452|ref|YP_842570.1| - 4.9e-26 91.3 0.0 6.5e-26 90.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|116753452|ref|YP_842570.1| - 5.6e-14 52.3 0.0 8.4e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2240 PF09999.9 gi|116753454|ref|YP_842572.1| - 7e-44 149.0 0.1 8e-44 148.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF4777 PF16007.5 gi|116753454|ref|YP_842572.1| - 0.097 12.9 0.1 15 5.9 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) FAD_oxidored PF12831.7 gi|116753455|ref|YP_842573.1| - 9.2e-10 38.4 0.0 1.3e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|116753455|ref|YP_842573.1| - 5e-09 36.2 2.0 0.0014 18.3 0.9 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|116753455|ref|YP_842573.1| - 8.8e-08 31.6 0.0 0.0005 19.2 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|116753455|ref|YP_842573.1| - 1.3e-07 31.2 0.0 1.9e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|116753455|ref|YP_842573.1| - 9e-07 28.1 0.1 0.017 14.0 0.0 3.1 3 0 0 3 3 3 2 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|116753455|ref|YP_842573.1| - 2e-06 27.3 0.2 7e-05 22.2 0.0 2.5 2 1 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|116753455|ref|YP_842573.1| - 2.9e-06 26.6 2.3 2.1e-05 23.8 1.9 2.2 1 1 1 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|116753455|ref|YP_842573.1| - 7.8e-06 24.8 0.1 0.00012 20.9 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|116753455|ref|YP_842573.1| - 7.2e-05 22.0 0.0 0.00011 21.5 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|116753455|ref|YP_842573.1| - 0.0046 16.3 0.7 0.0072 15.6 0.7 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|116753455|ref|YP_842573.1| - 0.0092 16.2 0.1 0.028 14.6 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|116753455|ref|YP_842573.1| - 0.01 16.4 0.0 0.17 12.4 0.0 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|116753455|ref|YP_842573.1| - 0.15 11.3 0.1 0.3 10.3 0.1 1.5 1 0 0 1 1 1 0 Thi4 family CxxCxxCC PF03692.15 gi|116753456|ref|YP_842574.1| - 0.00025 21.7 6.8 0.0003 21.4 6.8 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Radical_SAM PF04055.21 gi|116753457|ref|YP_842575.1| - 1.3e-09 38.6 0.0 3.9e-09 37.1 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|116753457|ref|YP_842575.1| - 6.2e-06 26.3 0.0 5.6e-05 23.3 0.0 2.3 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|116753457|ref|YP_842575.1| - 9.3e-05 22.7 0.0 0.00027 21.2 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Hydrolase PF00702.26 gi|116753457|ref|YP_842575.1| - 0.11 12.8 0.0 0.24 11.6 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Epimerase PF01370.21 gi|116753458|ref|YP_842576.1| - 2.1e-62 210.8 0.0 2.4e-62 210.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|116753458|ref|YP_842576.1| - 1.5e-56 192.2 0.0 8.1e-56 189.8 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|116753458|ref|YP_842576.1| - 3.6e-27 95.1 0.0 4.9e-27 94.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|116753458|ref|YP_842576.1| - 1.2e-14 54.1 0.0 1.1e-13 51.0 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|116753458|ref|YP_842576.1| - 7.6e-10 38.4 0.0 6.2e-07 28.9 0.0 2.6 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|116753458|ref|YP_842576.1| - 3.2e-09 36.3 0.0 4.3e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|116753458|ref|YP_842576.1| - 5.1e-08 33.0 0.0 7.7e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|116753458|ref|YP_842576.1| - 0.00028 21.2 0.0 0.00044 20.5 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|116753458|ref|YP_842576.1| - 0.0019 17.8 0.0 0.003 17.2 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|116753458|ref|YP_842576.1| - 0.0023 17.4 0.1 0.0033 16.9 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|116753458|ref|YP_842576.1| - 0.032 14.2 0.1 0.064 13.2 0.1 1.6 1 1 0 1 1 1 0 KR domain TrkA_N PF02254.18 gi|116753458|ref|YP_842576.1| - 0.096 13.0 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain DapB_N PF01113.20 gi|116753458|ref|YP_842576.1| - 0.12 12.5 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus MarR_2 PF12802.7 gi|116753459|ref|YP_842577.1| - 2.4e-07 30.6 0.0 3.9e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|116753459|ref|YP_842577.1| - 6.1e-07 29.5 0.0 9.6e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|116753459|ref|YP_842577.1| - 8.9e-06 25.2 0.0 1.4e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|116753459|ref|YP_842577.1| - 2e-05 24.4 0.0 2.6e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|116753459|ref|YP_842577.1| - 0.008 16.7 0.1 0.012 16.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|116753459|ref|YP_842577.1| - 0.0088 15.9 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_micro PF17007.5 gi|116753459|ref|YP_842577.1| - 0.047 12.5 0.0 0.05 12.4 0.0 1.0 1 0 0 1 1 1 0 HTH-like Rio2_N PF09202.11 gi|116753459|ref|YP_842577.1| - 0.13 12.5 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal CtsR_C PF17727.1 gi|116753459|ref|YP_842577.1| - 0.18 11.9 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 CtsR C-terminal dimerization domain LSM PF01423.22 gi|116753460|ref|YP_842578.1| - 7.3e-18 64.0 1.4 8.1e-18 63.9 1.4 1.0 1 0 0 1 1 1 1 LSM domain NifU PF01106.17 gi|116753461|ref|YP_842579.1| - 1.5e-24 85.9 0.3 1.7e-24 85.8 0.3 1.0 1 0 0 1 1 1 1 NifU-like domain FeS_assembly_P PF01883.19 gi|116753461|ref|YP_842579.1| - 3e-05 24.1 0.0 0.0001 22.4 0.0 1.8 1 1 0 1 1 1 1 Iron-sulfur cluster assembly protein Nbl1_Borealin_N PF10444.9 gi|116753461|ref|YP_842579.1| - 0.054 13.1 0.8 0.19 11.4 0.1 1.9 2 0 0 2 2 2 0 Nbl1 / Borealin N terminal Nit_Regul_Hom PF10126.9 gi|116753462|ref|YP_842580.1| - 1.9e-45 153.3 0.1 2.4e-45 153.0 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII DUF3674 PF12426.8 gi|116753462|ref|YP_842580.1| - 0.16 12.0 1.0 1.8 8.7 0.1 2.3 2 0 0 2 2 2 0 RNA dependent RNA polymerase TP_methylase PF00590.20 gi|116753463|ref|YP_842581.1| - 9.8e-20 71.4 0.3 3.9e-18 66.2 0.3 2.5 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.17 gi|116753464|ref|YP_842582.1| - 2.4e-47 161.4 0.3 3.2e-47 161.0 0.3 1.1 1 0 0 1 1 1 1 CbiD TrkA_C PF02080.21 gi|116753464|ref|YP_842582.1| - 0.077 12.8 0.0 0.24 11.2 0.0 1.9 2 0 0 2 2 2 0 TrkA-C domain NifU PF01106.17 gi|116753464|ref|YP_842582.1| - 0.23 11.7 1.1 0.59 10.3 0.3 2.1 2 0 0 2 2 2 0 NifU-like domain CbiC PF02570.15 gi|116753465|ref|YP_842583.1| - 3.8e-57 193.1 2.8 4.3e-57 192.9 2.8 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.20 gi|116753466|ref|YP_842584.1| - 4.1e-66 223.0 0.5 2.8e-40 138.5 0.1 2.0 2 0 0 2 2 2 2 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|116753467|ref|YP_842585.1| - 1.6e-28 98.5 0.4 4.7e-28 97.0 0.0 2.0 3 0 0 3 3 3 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|116753467|ref|YP_842585.1| - 5.6e-21 75.3 0.3 8.2e-21 74.7 0.3 1.3 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.20 gi|116753468|ref|YP_842586.1| - 1.9e-50 171.8 0.2 2.2e-50 171.5 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|116753468|ref|YP_842586.1| - 0.072 13.5 0.0 0.16 12.4 0.0 1.8 1 1 0 1 1 1 0 Radical SAM superfamily FPRL1_inhibitor PF16104.5 gi|116753468|ref|YP_842586.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Formyl peptide receptor-like 1 inhibitory protein VipB PF05943.12 gi|116753468|ref|YP_842586.1| - 0.24 10.2 0.0 0.34 9.7 0.0 1.1 1 0 0 1 1 1 0 Type VI secretion protein, EvpB/VC_A0108, tail sheath TP_methylase PF00590.20 gi|116753469|ref|YP_842587.1| - 7e-31 107.8 0.0 3.6e-30 105.5 0.0 1.8 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CMAS PF02353.20 gi|116753470|ref|YP_842588.1| - 5.6e-06 25.8 0.0 7.9e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.6 gi|116753470|ref|YP_842588.1| - 6.2e-06 26.8 0.0 8.7e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|116753470|ref|YP_842588.1| - 1.1e-05 25.2 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116753470|ref|YP_842588.1| - 1.3e-05 25.8 0.0 2.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|116753470|ref|YP_842588.1| - 0.00021 20.8 0.1 0.00029 20.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|116753470|ref|YP_842588.1| - 0.0018 18.1 0.0 0.0026 17.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|116753470|ref|YP_842588.1| - 0.0019 18.0 0.0 0.0027 17.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|116753470|ref|YP_842588.1| - 0.0033 17.0 0.0 0.0047 16.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|116753470|ref|YP_842588.1| - 0.0095 15.6 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CRS1_YhbY PF01985.21 gi|116753470|ref|YP_842588.1| - 0.028 14.6 0.0 0.046 13.9 0.0 1.3 1 0 0 1 1 1 0 CRS1 / YhbY (CRM) domain Methyltransf_12 PF08242.12 gi|116753470|ref|YP_842588.1| - 0.038 14.7 0.0 0.081 13.7 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.13 gi|116753470|ref|YP_842588.1| - 0.084 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 NodS PF05401.11 gi|116753470|ref|YP_842588.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|116753470|ref|YP_842588.1| - 0.14 12.1 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain S-layer PF07752.11 gi|116753471|ref|YP_842589.1| - 3e-193 639.3 13.4 3.7e-98 327.7 2.4 2.2 2 0 0 2 2 2 2 S-layer protein CarbopepD_reg_2 PF13715.6 gi|116753471|ref|YP_842589.1| - 1.2e-08 34.9 7.0 3.9e-05 23.6 0.1 4.1 4 0 0 4 4 4 2 CarboxypepD_reg-like domain PEGA PF08308.11 gi|116753471|ref|YP_842589.1| - 5.1e-08 32.7 6.9 0.0037 17.1 0.0 4.7 5 0 0 5 5 5 2 PEGA domain tRNA-synt_1c_C PF03950.18 gi|116753471|ref|YP_842589.1| - 0.0019 18.1 0.6 1.3 8.9 0.1 3.6 3 0 0 3 3 3 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF1533 PF07550.11 gi|116753471|ref|YP_842589.1| - 0.0037 17.1 1.5 2.3 8.2 0.0 3.9 3 0 0 3 3 3 1 Protein of unknown function (DUF1533) CarboxypepD_reg PF13620.6 gi|116753471|ref|YP_842589.1| - 0.0045 17.2 17.9 0.005 17.1 2.0 4.6 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain Y_Y_Y PF07495.13 gi|116753471|ref|YP_842589.1| - 0.026 14.5 0.1 0.23 11.4 0.0 2.6 2 0 0 2 2 2 0 Y_Y_Y domain PrcB_C PF14343.6 gi|116753471|ref|YP_842589.1| - 0.12 12.6 0.0 9.1 6.5 0.0 3.2 2 0 0 2 2 2 0 PrcB C-terminal DUF4198 PF10670.9 gi|116753471|ref|YP_842589.1| - 1.4 9.2 6.1 3.3 8.0 0.0 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF4198) LRV PF01816.17 gi|116753472|ref|YP_842590.1| - 5.3e-41 136.3 28.8 1.6e-07 31.3 0.3 10.2 9 1 1 10 10 10 8 Leucine rich repeat variant HEAT PF02985.22 gi|116753472|ref|YP_842590.1| - 3.1e-06 27.0 23.3 1.3 9.5 0.0 9.0 9 1 1 10 10 10 3 HEAT repeat DUF2336 PF10098.9 gi|116753472|ref|YP_842590.1| - 0.00054 19.5 7.0 0.26 10.7 0.1 3.8 2 1 1 4 4 4 2 Uncharacterised protein conserved in bacteria (DUF2336) HEAT_2 PF13646.6 gi|116753472|ref|YP_842590.1| - 0.0022 18.3 13.9 1.5 9.2 0.9 6.6 2 2 0 3 3 3 2 HEAT repeats DUF4042 PF13251.6 gi|116753472|ref|YP_842590.1| - 0.021 14.5 0.0 0.076 12.7 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4042) DUF4116 PF13475.6 gi|116753472|ref|YP_842590.1| - 0.12 12.1 0.0 44 3.9 0.0 3.9 5 0 0 5 5 5 0 Domain of unknown function (DUF4116) acVLRF1 PF18859.1 gi|116753473|ref|YP_842591.1| - 3e-15 56.7 0.4 8.9e-15 55.1 0.0 1.9 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|116753473|ref|YP_842591.1| - 1.3e-06 28.7 0.0 3e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_2 PF03464.15 gi|116753473|ref|YP_842591.1| - 0.00028 21.2 0.3 0.0005 20.4 0.0 1.5 2 0 0 2 2 1 1 eRF1 domain 2 T3SSipB PF16535.5 gi|116753473|ref|YP_842591.1| - 0.0015 19.0 0.2 0.0022 18.5 0.2 1.2 1 0 0 1 1 1 1 Type III cell invasion protein SipB baeRF_family2 PF18844.1 gi|116753473|ref|YP_842591.1| - 0.0015 18.6 1.7 0.0016 18.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 2 DASH_Spc19 PF08287.11 gi|116753473|ref|YP_842591.1| - 0.0088 16.0 6.9 0.067 13.1 4.9 2.2 2 0 0 2 2 2 1 Spc19 CENP-F_leu_zip PF10473.9 gi|116753473|ref|YP_842591.1| - 0.01 15.8 6.9 0.024 14.7 6.9 1.6 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4164 PF13747.6 gi|116753473|ref|YP_842591.1| - 0.02 15.1 5.0 0.02 15.1 5.0 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4164) DUF812 PF05667.11 gi|116753473|ref|YP_842591.1| - 0.024 13.5 3.1 0.037 12.9 3.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF1043 PF06295.12 gi|116753473|ref|YP_842591.1| - 0.027 14.5 0.4 0.041 13.9 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) AcylCoA_dehyd_C PF12186.8 gi|116753473|ref|YP_842591.1| - 0.027 14.6 0.3 7.5 6.7 0.3 2.3 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase C terminal Phage_GPO PF05929.11 gi|116753473|ref|YP_842591.1| - 0.1 12.2 0.8 0.14 11.8 0.8 1.2 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase HemX PF04375.14 gi|116753473|ref|YP_842591.1| - 0.1 11.9 0.8 0.15 11.3 0.8 1.1 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Tektin PF03148.14 gi|116753473|ref|YP_842591.1| - 0.17 10.6 5.9 0.29 9.9 5.9 1.3 1 0 0 1 1 1 0 Tektin family KxDL PF10241.9 gi|116753473|ref|YP_842591.1| - 0.2 12.0 3.8 0.11 12.8 1.5 1.7 2 0 0 2 2 1 0 Uncharacterized conserved protein TMPIT PF07851.13 gi|116753473|ref|YP_842591.1| - 0.29 10.3 1.0 0.41 9.9 1.0 1.1 1 0 0 1 1 1 0 TMPIT-like protein FlaC_arch PF05377.11 gi|116753473|ref|YP_842591.1| - 0.33 11.4 1.3 0.95 9.9 1.3 1.7 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|116753473|ref|YP_842591.1| - 0.51 9.2 6.1 0.77 8.6 6.1 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Spc24 PF08286.11 gi|116753473|ref|YP_842591.1| - 0.73 10.1 2.9 1.3 9.3 2.9 1.4 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 4HB_MCP_1 PF12729.7 gi|116753473|ref|YP_842591.1| - 0.98 8.9 3.1 1.6 8.3 3.1 1.3 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Atg14 PF10186.9 gi|116753473|ref|YP_842591.1| - 1.5 7.8 4.2 2.2 7.3 4.2 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DHR10 PF18595.1 gi|116753473|ref|YP_842591.1| - 1.6 8.8 16.4 0.17 11.9 10.7 2.0 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain XhlA PF10779.9 gi|116753473|ref|YP_842591.1| - 5.9 7.2 6.0 3.4 8.0 3.3 1.9 2 0 0 2 2 2 0 Haemolysin XhlA TBP PF00352.21 gi|116753474|ref|YP_842592.1| - 2.6e-59 197.1 0.3 6.3e-29 99.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|116753474|ref|YP_842592.1| - 1.3e-09 38.1 0.0 0.00075 19.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Peptidase_U32 PF01136.19 gi|116753475|ref|YP_842593.1| - 7.5e-104 346.0 0.0 1.9e-83 279.2 0.0 3.0 2 1 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|116753475|ref|YP_842593.1| - 5.3e-17 62.4 0.0 1e-16 61.5 0.0 1.5 1 0 0 1 1 1 1 Collagenase Cupin_2 PF07883.11 gi|116753476|ref|YP_842594.1| - 1.6e-14 53.3 0.0 2.9e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.7 gi|116753476|ref|YP_842594.1| - 1.4e-06 28.3 0.0 2.1e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|116753476|ref|YP_842594.1| - 3.2e-06 27.1 0.0 4.5e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|116753476|ref|YP_842594.1| - 8.3e-06 26.1 0.0 1.3e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Cupin_3 PF05899.12 gi|116753476|ref|YP_842594.1| - 0.0072 16.0 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.18 gi|116753476|ref|YP_842594.1| - 0.042 13.8 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase EutQ PF06249.12 gi|116753476|ref|YP_842594.1| - 0.09 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ AMP-binding PF00501.28 gi|116753477|ref|YP_842595.1| - 1.5e-73 247.8 0.0 1.9e-73 247.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|116753477|ref|YP_842595.1| - 3.7e-25 88.7 0.6 8.5e-25 87.5 0.6 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.7 gi|116753477|ref|YP_842595.1| - 8e-09 36.0 8.2 1.7e-08 34.9 8.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116753477|ref|YP_842595.1| - 4e-08 33.3 4.4 0.0031 17.6 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116753477|ref|YP_842595.1| - 3.9e-07 30.1 6.7 8.5e-07 29.0 6.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|116753477|ref|YP_842595.1| - 5.1e-07 29.2 17.7 0.00012 21.8 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116753477|ref|YP_842595.1| - 9.8e-07 28.8 6.5 2e-06 27.9 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|116753477|ref|YP_842595.1| - 8.2e-05 22.8 12.3 0.009 16.4 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|116753477|ref|YP_842595.1| - 9.4e-05 22.3 13.5 0.019 15.0 2.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|116753477|ref|YP_842595.1| - 9.7e-05 23.1 3.5 0.13 13.2 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116753477|ref|YP_842595.1| - 0.0001 22.2 16.2 0.028 14.5 4.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|116753477|ref|YP_842595.1| - 0.00027 21.8 10.7 0.38 11.7 10.8 2.5 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|116753477|ref|YP_842595.1| - 0.0062 17.4 17.1 0.4 11.7 4.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|116753477|ref|YP_842595.1| - 0.0066 16.9 11.2 0.47 10.9 2.7 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|116753477|ref|YP_842595.1| - 0.0098 16.4 9.8 0.82 10.3 11.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|116753477|ref|YP_842595.1| - 0.061 13.9 11.0 0.15 12.6 2.3 2.8 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|116753477|ref|YP_842595.1| - 0.29 11.9 6.7 3.4 8.5 0.8 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain POR_N PF01855.19 gi|116753478|ref|YP_842596.1| - 6.5e-52 176.6 0.0 8.2e-52 176.2 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|116753478|ref|YP_842596.1| - 5.4e-23 81.2 0.0 9.8e-23 80.4 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|116753478|ref|YP_842596.1| - 3.8e-06 26.8 0.0 8.2e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain POR PF01558.18 gi|116753479|ref|YP_842597.1| - 1.2e-31 110.2 0.0 5e-31 108.1 0.0 1.9 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|116753479|ref|YP_842597.1| - 8.7e-23 80.8 0.1 1.4e-22 80.1 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain F420_ligase PF01996.16 gi|116753480|ref|YP_842598.1| - 8.9e-57 192.2 0.0 1.1e-56 191.9 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase CofC PF01983.16 gi|116753481|ref|YP_842599.1| - 3.5e-37 127.7 0.0 4.2e-37 127.4 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|116753481|ref|YP_842599.1| - 1.5e-05 25.4 0.0 3.9e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain MoeA_N PF03453.17 gi|116753482|ref|YP_842600.1| - 2.2e-43 147.7 1.6 3.5e-43 147.1 1.6 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|116753482|ref|YP_842600.1| - 2.5e-21 75.9 0.0 7.7e-21 74.3 0.0 1.9 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|116753482|ref|YP_842600.1| - 1.5e-14 53.9 0.0 9.6e-14 51.3 0.0 2.4 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) PBP_like PF12727.7 gi|116753482|ref|YP_842600.1| - 3.2e-08 32.9 0.0 7.5e-07 28.5 0.0 2.4 1 1 0 1 1 1 1 PBP superfamily domain Chorismate_synt PF01264.21 gi|116753483|ref|YP_842601.1| - 6e-147 488.6 0.1 6.8e-147 488.4 0.1 1.0 1 0 0 1 1 1 1 Chorismate synthase RVT_3 PF13456.6 gi|116753484|ref|YP_842602.1| - 9.2e-16 57.8 0.0 9.9e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|116753484|ref|YP_842602.1| - 7.3e-08 32.7 0.0 1.2e-07 32.1 0.0 1.3 1 1 0 1 1 1 1 RNase H Cupin_3 PF05899.12 gi|116753484|ref|YP_842602.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) FMN_red PF03358.15 gi|116753485|ref|YP_842603.1| - 9.9e-33 113.1 0.0 1.3e-32 112.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|116753485|ref|YP_842603.1| - 3.5e-09 36.6 0.0 4.5e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold CxxCxxCC PF03692.15 gi|116753486|ref|YP_842604.1| - 4.5e-13 49.7 0.0 1.5e-12 48.0 0.0 1.8 1 1 1 2 2 2 1 Putative zinc- or iron-chelating domain AAA_17 PF13207.6 gi|116753486|ref|YP_842604.1| - 0.043 14.2 0.0 0.077 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain GATase PF00117.28 gi|116753487|ref|YP_842605.1| - 3.1e-32 111.9 0.0 3.5e-32 111.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|116753487|ref|YP_842605.1| - 2e-13 50.6 3.3 1.1e-12 48.2 1.2 2.5 2 1 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|116753487|ref|YP_842605.1| - 0.2 11.2 0.6 0.75 9.4 0.6 1.8 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain iPGM_N PF06415.13 gi|116753488|ref|YP_842606.1| - 1.1e-84 283.2 0.0 1.5e-84 282.8 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|116753488|ref|YP_842606.1| - 2.4e-82 276.0 0.0 2.8e-82 275.8 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|116753488|ref|YP_842606.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|116753488|ref|YP_842606.1| - 0.06 12.9 0.0 0.094 12.3 0.0 1.3 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase NdhO PF11910.8 gi|116753488|ref|YP_842606.1| - 0.17 12.1 0.0 0.33 11.1 0.0 1.4 1 0 0 1 1 1 0 Cyanobacterial and plant NDH-1 subunit O Chitin_bind_4 PF00379.23 gi|116753489|ref|YP_842607.1| - 0.043 14.4 0.1 6.8 7.3 0.0 2.5 2 0 0 2 2 2 0 Insect cuticle protein eIF-1a PF01176.19 gi|116753490|ref|YP_842608.1| - 2.5e-24 84.9 1.2 3e-24 84.6 1.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF2007 PF09413.10 gi|116753490|ref|YP_842608.1| - 0.046 13.9 0.0 0.062 13.5 0.0 1.2 1 0 0 1 1 1 0 Putative prokaryotic signal transducing protein RIO1 PF01163.22 gi|116753491|ref|YP_842609.1| - 4.2e-61 205.8 0.0 5.6e-61 205.4 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|116753491|ref|YP_842609.1| - 1.8e-05 24.8 2.2 0.0003 20.8 0.2 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|116753491|ref|YP_842609.1| - 5.3e-05 22.7 0.0 9.8e-05 21.8 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|116753491|ref|YP_842609.1| - 0.00087 18.7 0.1 0.014 14.8 0.1 2.3 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family KH_1 PF00013.29 gi|116753492|ref|YP_842610.1| - 9.4e-16 57.4 1.7 4.2e-08 32.9 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|116753492|ref|YP_842610.1| - 0.002 17.9 1.7 2.5 8.0 0.7 2.8 3 0 0 3 3 3 2 KH domain KH_4 PF13083.6 gi|116753492|ref|YP_842610.1| - 0.0061 16.4 3.9 1.7 8.6 0.7 3.4 2 2 1 3 3 3 2 KH domain GNAT_like PF18407.1 gi|116753492|ref|YP_842610.1| - 0.073 13.4 1.0 0.24 11.8 1.0 1.8 1 1 0 1 1 1 0 GCN5-related N-acetyltransferase like domain Peptidase_M50 PF02163.22 gi|116753493|ref|YP_842611.1| - 2.2e-23 82.8 0.0 1.6e-22 80.0 0.0 2.1 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|116753493|ref|YP_842611.1| - 6.1e-06 26.5 0.9 1.5e-05 25.2 0.0 1.9 2 0 0 2 2 2 1 PDZ domain PDZ_6 PF17820.1 gi|116753493|ref|YP_842611.1| - 0.12 12.2 0.0 0.35 10.8 0.0 1.8 1 0 0 1 1 1 0 PDZ domain DUF3267 PF11667.8 gi|116753493|ref|YP_842611.1| - 5.6 7.3 12.2 0.64 10.3 0.4 3.2 3 0 0 3 3 3 0 Putative zincin peptidase Hydantoinase_A PF01968.18 gi|116753494|ref|YP_842612.1| - 6.1e-17 61.8 0.1 2e-16 60.1 0.0 1.9 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|116753494|ref|YP_842612.1| - 0.063 11.9 0.0 2.6 6.5 0.0 2.1 2 0 0 2 2 2 0 MutL protein FrhB_FdhB_C PF04432.13 gi|116753495|ref|YP_842613.1| - 1.2e-42 145.3 0.0 1.8e-42 144.8 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|116753495|ref|YP_842613.1| - 2.2e-24 85.4 0.6 4.3e-24 84.4 0.6 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_17 PF13534.6 gi|116753495|ref|YP_842613.1| - 0.042 14.4 6.7 2.6 8.7 3.8 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116753495|ref|YP_842613.1| - 0.053 14.5 4.0 19 6.3 0.0 3.1 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|116753495|ref|YP_842613.1| - 0.11 13.1 10.3 0.79 10.4 0.2 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|116753495|ref|YP_842613.1| - 0.5 10.9 5.2 16 6.2 2.0 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_7 PF12838.7 gi|116753495|ref|YP_842613.1| - 0.54 10.9 10.5 2.1 9.0 0.0 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116753495|ref|YP_842613.1| - 1.3 9.3 12.3 4.9 7.4 10.8 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|116753495|ref|YP_842613.1| - 2.2 8.2 19.6 0.7 9.8 0.4 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116753495|ref|YP_842613.1| - 3.7 7.7 14.0 12 6.1 12.0 2.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116753495|ref|YP_842613.1| - 8.9 6.6 17.2 2.5 8.3 0.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain MMR_HSR1_C PF08438.10 gi|116753496|ref|YP_842614.1| - 4.6e-34 117.4 0.0 8.4e-34 116.5 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|116753496|ref|YP_842614.1| - 2.1e-20 72.9 0.0 3.7e-19 68.9 0.0 2.6 2 1 1 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|116753496|ref|YP_842614.1| - 3.4e-14 52.6 0.0 7.2e-14 51.6 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|116753496|ref|YP_842614.1| - 2.1e-08 33.8 0.0 5.9e-07 29.1 0.0 2.4 2 0 0 2 2 2 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|116753496|ref|YP_842614.1| - 0.043 14.0 0.1 10 6.4 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF933) MMR_HSR1_Xtn PF16897.5 gi|116753496|ref|YP_842614.1| - 0.059 13.4 0.0 0.14 12.2 0.0 1.6 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain GTP_EFTU PF00009.27 gi|116753496|ref|YP_842614.1| - 0.13 11.8 0.1 2 7.9 0.0 2.5 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain GatB_N PF02934.15 gi|116753497|ref|YP_842615.1| - 1.8e-102 342.4 0.0 2.6e-102 341.9 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|116753497|ref|YP_842615.1| - 5.6e-40 136.6 0.0 9.2e-40 135.9 0.0 1.3 1 0 0 1 1 1 1 GatB domain Amidase PF01425.21 gi|116753498|ref|YP_842616.1| - 1.4e-159 531.9 0.0 1.6e-159 531.7 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 gi|116753499|ref|YP_842617.1| - 6.9e-24 83.9 1.3 9e-24 83.5 1.3 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit eIF-5_eIF-2B PF01873.17 gi|116753501|ref|YP_842619.1| - 2.3e-39 133.9 0.0 3.3e-39 133.4 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|116753501|ref|YP_842619.1| - 1.3e-12 47.5 0.4 3.5e-12 46.1 0.6 1.6 2 0 0 2 2 2 1 TRAM domain S1 PF00575.23 gi|116753501|ref|YP_842619.1| - 0.056 13.8 1.3 1.6 9.1 0.1 2.6 2 0 0 2 2 2 0 S1 RNA binding domain ZF-HD_dimer PF04770.12 gi|116753501|ref|YP_842619.1| - 0.089 13.1 0.3 0.18 12.2 0.3 1.6 1 0 0 1 1 1 0 ZF-HD protein dimerisation region zf-RanBP PF00641.18 gi|116753501|ref|YP_842619.1| - 0.66 9.3 0.1 0.66 9.3 0.1 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Ribosomal_L16 PF00252.18 gi|116753502|ref|YP_842620.1| - 8.4e-37 126.1 0.0 1e-36 125.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Peptidase_C25 PF01364.18 gi|116753503|ref|YP_842621.1| - 1.2e-40 140.0 0.0 2e-40 139.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family C25 DUF11 PF01345.18 gi|116753503|ref|YP_842621.1| - 0.0024 18.1 0.0 0.01 16.1 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF11 CHAT PF12770.7 gi|116753503|ref|YP_842621.1| - 0.0026 17.2 0.0 0.0043 16.5 0.0 1.3 1 0 0 1 1 1 1 CHAT domain GHL10 PF02638.15 gi|116753503|ref|YP_842621.1| - 0.0082 15.3 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase-like 10 ANF_receptor PF01094.28 gi|116753503|ref|YP_842621.1| - 0.019 14.1 0.1 0.091 11.8 0.0 2.0 2 0 0 2 2 2 0 Receptor family ligand binding region GHL6 PF14871.6 gi|116753503|ref|YP_842621.1| - 0.16 12.1 0.0 0.48 10.6 0.0 1.7 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 N_BRCA1_IG PF16158.5 gi|116753504|ref|YP_842622.1| - 0.00012 22.7 0.0 0.00093 19.9 0.0 2.4 3 0 0 3 3 3 1 Ig-like domain from next to BRCA1 gene NPCBM_assoc PF10633.9 gi|116753504|ref|YP_842622.1| - 0.0003 21.0 0.0 0.17 12.2 0.0 3.7 4 0 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CW_binding_2 PF04122.12 gi|116753504|ref|YP_842622.1| - 0.011 16.4 0.3 8.9 7.1 0.1 2.5 2 0 0 2 2 2 0 Putative cell wall binding repeat 2 DUF11 PF01345.18 gi|116753504|ref|YP_842622.1| - 0.024 15.0 0.4 18 5.7 0.0 3.6 3 1 0 3 3 3 0 Domain of unknown function DUF11 DUF1573 PF07610.11 gi|116753504|ref|YP_842622.1| - 0.07 13.2 0.0 1.5 8.9 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1573) DUF1297 PF06973.12 gi|116753505|ref|YP_842623.1| - 5.9e-55 185.7 0.1 8e-55 185.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|116753505|ref|YP_842623.1| - 1.5e-42 144.4 0.0 2.5e-42 143.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|116753505|ref|YP_842623.1| - 4.2e-06 26.9 0.0 1.6e-05 25.0 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|116753505|ref|YP_842623.1| - 0.00022 20.8 0.0 0.00043 19.8 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|116753505|ref|YP_842623.1| - 0.024 14.2 0.3 0.52 9.9 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain sCache_3_3 PF17202.4 gi|116753505|ref|YP_842623.1| - 0.082 13.3 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 Single cache domain 3 RimK PF08443.11 gi|116753505|ref|YP_842623.1| - 0.096 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain SIS PF01380.22 gi|116753506|ref|YP_842624.1| - 8.9e-08 32.1 0.0 0.0021 17.9 0.0 2.9 2 1 0 2 2 2 2 SIS domain Trm5_N PF18093.1 gi|116753506|ref|YP_842624.1| - 0.18 11.7 0.1 2.5 8.1 0.0 2.2 2 0 0 2 2 2 0 tRNA methyltransferase 5 N-terminal domain Lys-AminoMut_A PF09043.11 gi|116753506|ref|YP_842624.1| - 0.19 10.2 0.0 0.29 9.6 0.0 1.2 1 0 0 1 1 1 0 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Metallophos_2 PF12850.7 gi|116753507|ref|YP_842625.1| - 1.6e-26 93.4 0.0 2e-26 93.1 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|116753507|ref|YP_842625.1| - 0.00011 22.7 1.6 0.0087 16.6 0.1 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase HTH_45 PF14947.6 gi|116753508|ref|YP_842626.1| - 2.7e-26 91.4 0.6 3e-26 91.2 0.6 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|116753508|ref|YP_842626.1| - 0.005 16.6 0.1 0.005 16.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|116753508|ref|YP_842626.1| - 0.008 16.0 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|116753508|ref|YP_842626.1| - 0.0082 16.6 0.1 0.027 15.0 0.0 1.9 2 1 1 3 3 3 1 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|116753508|ref|YP_842626.1| - 0.024 14.7 0.0 0.03 14.4 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1495 PF07381.11 gi|116753508|ref|YP_842626.1| - 0.062 13.1 0.1 0.091 12.6 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF5043 PF16446.5 gi|116753508|ref|YP_842626.1| - 0.074 13.0 0.0 0.091 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5043) SAMP PF05924.11 gi|116753508|ref|YP_842626.1| - 0.11 11.8 0.1 0.2 11.0 0.1 1.5 1 0 0 1 1 1 0 SAMP Motif EMG1 PF03587.14 gi|116753509|ref|YP_842627.1| - 1.5e-46 158.5 0.0 1.8e-46 158.3 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Lactamase_B_2 PF12706.7 gi|116753510|ref|YP_842628.1| - 8.7e-30 103.7 1.0 1e-29 103.5 1.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|116753510|ref|YP_842628.1| - 8.8e-18 65.0 0.2 1.3e-17 64.5 0.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|116753510|ref|YP_842628.1| - 1.1e-06 28.6 0.1 1.8e-06 27.9 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|116753510|ref|YP_842628.1| - 0.0044 16.5 0.0 0.0068 15.9 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain AAA PF00004.29 gi|116753511|ref|YP_842629.1| - 1.7e-35 122.3 0.1 7e-35 120.3 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|116753511|ref|YP_842629.1| - 1.9e-12 46.8 0.3 4.4e-12 45.6 0.3 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_22 PF13401.6 gi|116753511|ref|YP_842629.1| - 0.00022 21.5 1.5 0.031 14.5 0.1 3.3 2 1 2 4 4 3 1 AAA domain AAA_18 PF13238.6 gi|116753511|ref|YP_842629.1| - 0.00043 20.8 0.1 0.0047 17.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|116753511|ref|YP_842629.1| - 0.0009 19.5 0.1 0.003 17.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|116753511|ref|YP_842629.1| - 0.0015 18.5 0.0 0.006 16.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|116753511|ref|YP_842629.1| - 0.0019 18.4 0.0 0.0067 16.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|116753511|ref|YP_842629.1| - 0.0034 17.8 0.9 0.44 10.9 0.0 3.0 2 1 1 3 3 3 1 AAA ATPase domain AAA_17 PF13207.6 gi|116753511|ref|YP_842629.1| - 0.013 16.0 1.2 0.048 14.1 0.1 2.6 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|116753511|ref|YP_842629.1| - 0.018 14.6 0.2 0.11 12.1 0.1 2.4 2 1 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|116753511|ref|YP_842629.1| - 0.026 13.7 0.0 0.041 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RuvB_N PF05496.12 gi|116753511|ref|YP_842629.1| - 0.026 14.3 0.0 0.058 13.1 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ADK PF00406.22 gi|116753511|ref|YP_842629.1| - 0.033 14.3 0.1 7.4 6.7 0.0 2.6 2 0 0 2 2 2 0 Adenylate kinase Zeta_toxin PF06414.12 gi|116753511|ref|YP_842629.1| - 0.045 13.0 0.2 1.5 8.1 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_19 PF13245.6 gi|116753511|ref|YP_842629.1| - 0.052 13.9 0.4 0.18 12.1 0.4 2.1 1 1 0 1 1 1 0 AAA domain FeoA PF04023.14 gi|116753511|ref|YP_842629.1| - 0.062 13.6 0.1 0.16 12.2 0.1 1.7 1 0 0 1 1 1 0 FeoA domain AAA_30 PF13604.6 gi|116753511|ref|YP_842629.1| - 0.078 12.7 0.3 0.16 11.7 0.3 1.6 1 1 0 1 1 1 0 AAA domain SKI PF01202.22 gi|116753511|ref|YP_842629.1| - 0.1 12.7 0.1 0.3 11.2 0.0 1.8 2 0 0 2 2 2 0 Shikimate kinase AAA_2 PF07724.14 gi|116753511|ref|YP_842629.1| - 0.1 12.7 0.0 0.47 10.6 0.0 2.2 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.21 gi|116753511|ref|YP_842629.1| - 0.15 11.4 0.1 0.57 9.5 0.1 2.0 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.6 gi|116753511|ref|YP_842629.1| - 0.16 11.7 0.1 0.31 10.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|116753511|ref|YP_842629.1| - 0.18 11.9 0.0 0.44 10.7 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|116753511|ref|YP_842629.1| - 0.21 11.1 0.1 0.51 9.8 0.1 1.7 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|116753511|ref|YP_842629.1| - 0.34 11.4 2.2 21 5.6 0.1 2.5 2 0 0 2 2 2 0 AAA domain Lipase_GDSL_2 PF13472.6 gi|116753512|ref|YP_842630.1| - 4.4e-28 98.9 0.0 5.2e-28 98.7 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|116753512|ref|YP_842630.1| - 8.8e-17 61.7 0.0 1.1e-16 61.4 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Trp_syntA PF00290.20 gi|116753513|ref|YP_842631.1| - 2.2e-80 269.2 0.0 2.9e-80 268.9 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|116753513|ref|YP_842631.1| - 8.3e-05 22.2 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|116753513|ref|YP_842631.1| - 0.0025 17.3 0.0 0.0066 15.9 0.0 1.6 2 0 0 2 2 2 1 PcrB family Radical_SAM PF04055.21 gi|116753513|ref|YP_842631.1| - 0.13 12.6 0.0 9 6.6 0.0 2.3 2 0 0 2 2 2 0 Radical SAM superfamily Pterin_bind PF00809.22 gi|116753513|ref|YP_842631.1| - 0.64 9.7 3.0 1.4 8.5 0.3 2.5 3 0 0 3 3 3 0 Pterin binding enzyme PALP PF00291.25 gi|116753514|ref|YP_842632.1| - 2e-39 135.8 0.9 2.5e-39 135.5 0.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme MtN3_slv PF03083.16 gi|116753515|ref|YP_842633.1| - 2.2e-09 37.2 2.2 2.6e-09 37.0 2.2 1.0 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PQ-loop PF04193.14 gi|116753515|ref|YP_842633.1| - 1.1e-08 34.7 1.3 1.1e-08 34.7 1.3 2.0 2 0 0 2 2 2 2 PQ loop repeat DDE_Tnp_1_5 PF13737.6 gi|116753517|ref|YP_842635.1| - 8.2e-33 113.1 0.0 3.2e-31 107.9 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|116753517|ref|YP_842635.1| - 9e-21 74.5 0.1 1.6e-20 73.7 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain VWA PF00092.28 gi|116753518|ref|YP_842636.1| - 1e-26 94.2 0.0 3.7e-22 79.4 0.0 2.5 2 1 0 2 2 2 2 von Willebrand factor type A domain VWA_2 PF13519.6 gi|116753518|ref|YP_842636.1| - 5.1e-22 78.5 0.1 1.5e-12 48.1 0.0 2.4 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_3 PF13768.6 gi|116753518|ref|YP_842636.1| - 1.2e-06 28.5 0.0 8.1e-06 25.9 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|116753518|ref|YP_842636.1| - 0.00053 19.4 0.6 0.073 12.4 0.2 2.3 2 0 0 2 2 2 2 VWA domain containing CoxE-like protein DUF11 PF01345.18 gi|116753518|ref|YP_842636.1| - 0.0033 17.7 1.7 0.56 10.5 0.0 2.7 2 0 0 2 2 2 2 Domain of unknown function DUF11 PGF-CTERM PF18204.1 gi|116753518|ref|YP_842636.1| - 0.1 12.6 0.0 0.29 11.2 0.0 1.8 1 0 0 1 1 1 0 PGF-CTERM motif Pentapeptide PF00805.22 gi|116753519|ref|YP_842637.1| - 1.6e-106 347.2 70.8 4.4e-11 42.2 0.7 14.8 4 2 11 18 18 18 17 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|116753519|ref|YP_842637.1| - 5.4e-58 193.1 0.0 5.1e-08 33.0 0.0 8.1 1 1 10 11 11 11 11 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|116753519|ref|YP_842637.1| - 5.5e-44 148.1 0.0 5.9e-06 26.3 0.4 12.3 3 2 8 11 11 11 11 Pentapeptide repeats (9 copies) ABC_sub_bind PF04392.12 gi|116753519|ref|YP_842637.1| - 8.9e-08 31.7 0.0 1.8e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter substrate binding protein CfAFP PF05264.11 gi|116753519|ref|YP_842637.1| - 0.00016 21.7 0.2 2.1 8.3 0.0 4.2 2 2 4 6 6 6 2 Choristoneura fumiferana antifreeze protein (CfAFP) DNA_ligase_OB PF03120.16 gi|116753519|ref|YP_842637.1| - 0.01 15.7 0.1 61 3.6 0.0 5.9 5 2 1 7 7 7 0 NAD-dependent DNA ligase OB-fold domain Nre_N PF04894.12 gi|116753520|ref|YP_842638.1| - 1.3e-90 303.9 0.0 1.8e-90 303.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|116753520|ref|YP_842638.1| - 9.5e-37 125.3 0.2 1.5e-36 124.6 0.2 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DUF1581 PF07619.11 gi|116753520|ref|YP_842638.1| - 0.065 13.4 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1581) Radical_SAM PF04055.21 gi|116753521|ref|YP_842639.1| - 2e-16 60.8 0.0 7.3e-15 55.7 0.0 2.7 2 1 1 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|116753521|ref|YP_842639.1| - 5e-15 55.6 0.1 1.1e-14 54.5 0.1 1.5 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.21 gi|116753522|ref|YP_842640.1| - 2e-12 47.8 3.8 6.1e-12 46.2 1.2 2.9 2 2 0 2 2 2 1 Radical SAM superfamily DUF2284 PF10050.9 gi|116753523|ref|YP_842641.1| - 1.2e-52 177.9 0.3 1.4e-52 177.7 0.3 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) SAM_adeno_trans PF01887.16 gi|116753524|ref|YP_842642.1| - 5.4e-77 258.4 0.0 6.1e-77 258.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase T4-Gluco-transf PF09198.10 gi|116753524|ref|YP_842642.1| - 0.023 14.3 0.1 0.05 13.2 0.1 1.5 1 0 0 1 1 1 0 Bacteriophage T4 beta-glucosyltransferase Bac_luciferase PF00296.20 gi|116753525|ref|YP_842643.1| - 3e-68 230.6 0.0 3.7e-68 230.3 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase CTP_transf_like PF01467.26 gi|116753526|ref|YP_842644.1| - 2.1e-14 53.9 0.0 3e-13 50.2 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|116753526|ref|YP_842644.1| - 0.19 10.9 0.0 7.1 5.7 0.1 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase DUF521 PF04412.13 gi|116753527|ref|YP_842645.1| - 1.7e-155 517.6 0.0 2e-155 517.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.16 gi|116753528|ref|YP_842646.1| - 1.4e-35 120.9 0.4 2.5e-35 120.1 0.4 1.4 1 0 0 1 1 1 1 Aconitase X swivel domain SprT-like PF10263.9 gi|116753530|ref|YP_842648.1| - 0.0055 16.6 0.8 0.0061 16.4 0.8 1.2 1 1 0 1 1 1 1 SprT-like family RNA_polI_A14 PF08203.11 gi|116753530|ref|YP_842648.1| - 0.079 13.7 0.0 0.082 13.6 0.0 1.1 1 0 0 1 1 1 0 Yeast RNA polymerase I subunit RPA14 Pec_lyase_C PF00544.19 gi|116753530|ref|YP_842648.1| - 0.19 11.3 0.0 0.2 11.2 0.0 1.0 1 0 0 1 1 1 0 Pectate lyase GXGXG PF01493.19 gi|116753531|ref|YP_842649.1| - 2.1e-35 122.0 6.1 2.6e-35 121.7 6.1 1.1 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.17 gi|116753532|ref|YP_842650.1| - 3e-141 470.8 0.1 3e-141 470.8 0.1 1.8 2 0 0 2 2 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|116753532|ref|YP_842650.1| - 2.6e-17 63.2 0.0 2.6e-09 37.0 0.1 2.2 2 0 0 2 2 2 2 Glutamate synthase central domain IMPDH PF00478.25 gi|116753532|ref|YP_842650.1| - 2e-08 33.6 6.6 2e-08 33.6 6.6 1.5 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Fer4_9 PF13187.6 gi|116753532|ref|YP_842650.1| - 2.3e-07 30.8 11.5 2.3e-07 30.8 11.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain FMN_dh PF01070.18 gi|116753532|ref|YP_842650.1| - 1.5e-06 27.5 8.3 1.5e-06 27.5 8.3 2.6 3 1 0 3 3 3 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|116753532|ref|YP_842650.1| - 3.9e-06 26.5 4.6 6.9e-06 25.7 4.6 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_7 PF12838.7 gi|116753532|ref|YP_842650.1| - 0.00029 21.4 19.6 0.0055 17.3 13.6 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116753532|ref|YP_842650.1| - 0.00034 21.5 0.6 0.00034 21.5 0.6 3.3 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain His_biosynth PF00977.21 gi|116753532|ref|YP_842650.1| - 0.00093 18.7 1.4 0.0022 17.5 0.1 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein Fer4 PF00037.27 gi|116753532|ref|YP_842650.1| - 0.0011 18.7 2.5 0.0011 18.7 2.5 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116753532|ref|YP_842650.1| - 0.009 16.1 19.8 0.023 14.8 1.5 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116753532|ref|YP_842650.1| - 0.0092 16.1 8.8 0.0092 16.1 8.8 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain G3P_antiterm PF04309.12 gi|116753532|ref|YP_842650.1| - 0.046 13.1 1.0 0.24 10.8 0.1 2.1 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|116753532|ref|YP_842650.1| - 0.072 12.3 5.6 0.23 10.6 5.6 1.8 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase Fer4_6 PF12837.7 gi|116753532|ref|YP_842650.1| - 0.14 12.3 21.6 0.16 12.1 1.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|116753532|ref|YP_842650.1| - 0.29 11.6 20.8 2.9 8.4 13.9 3.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain PcrB PF01884.17 gi|116753532|ref|YP_842650.1| - 0.37 10.2 7.4 4.2 6.8 0.2 2.9 1 1 1 3 3 3 0 PcrB family zf_PR_Knuckle PF18445.1 gi|116753532|ref|YP_842650.1| - 0.42 10.5 1.8 0.93 9.4 1.8 1.5 1 0 0 1 1 1 0 PR zinc knuckle motif Fer4_17 PF13534.6 gi|116753532|ref|YP_842650.1| - 0.83 10.2 21.3 44 4.7 0.6 3.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|116753532|ref|YP_842650.1| - 8 7.2 28.4 0.25 11.9 2.6 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain GATase_2 PF00310.21 gi|116753533|ref|YP_842651.1| - 2.8e-14 52.7 0.1 7e-12 44.8 0.0 2.5 2 1 0 2 2 2 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|116753533|ref|YP_842651.1| - 1.7e-08 34.7 0.0 7.3e-07 29.5 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|116753533|ref|YP_842651.1| - 6.4e-07 29.3 0.0 0.0046 16.9 0.0 2.3 2 0 0 2 2 2 2 Glutamine amidotransferase domain DUF5611 PF18446.1 gi|116753534|ref|YP_842652.1| - 2.8e-27 95.6 0.1 3.1e-27 95.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) DUF3270 PF11674.8 gi|116753535|ref|YP_842653.1| - 0.3 11.3 1.2 0.49 10.6 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3270) tRNA-synt_1d PF00750.19 gi|116753536|ref|YP_842654.1| - 4.1e-37 127.9 0.2 5.5e-37 127.5 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|116753536|ref|YP_842654.1| - 1.2e-30 106.2 0.2 1.5e-29 102.5 0.1 2.5 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|116753536|ref|YP_842654.1| - 2.1e-08 34.6 0.0 5e-08 33.4 0.0 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|116753536|ref|YP_842654.1| - 1e-07 31.2 0.0 0.0018 17.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|116753536|ref|YP_842654.1| - 9.9e-05 21.2 0.1 0.089 11.5 0.1 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|116753536|ref|YP_842654.1| - 0.0045 16.4 0.1 0.013 14.8 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|116753536|ref|YP_842654.1| - 0.0089 14.3 0.1 0.014 13.7 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) MAGE PF01454.19 gi|116753536|ref|YP_842654.1| - 0.041 13.6 0.0 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 MAGE family MCR_alpha_N PF02745.15 gi|116753536|ref|YP_842654.1| - 0.11 11.9 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, N-terminal domain DUF4139 PF13598.6 gi|116753537|ref|YP_842655.1| - 6.1e-12 45.7 0.1 1.5e-11 44.4 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4139) Top6b_C PF18000.1 gi|116753537|ref|YP_842655.1| - 0.00038 20.6 0.7 0.00077 19.6 0.7 1.5 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain DUF4897 PF16238.5 gi|116753537|ref|YP_842655.1| - 0.0051 16.7 4.1 0.011 15.6 0.5 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4897) ABC_tran PF00005.27 gi|116753538|ref|YP_842656.1| - 3.5e-32 111.8 0.0 4.9e-32 111.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116753538|ref|YP_842656.1| - 2.1e-08 34.4 0.0 0.00049 20.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|116753538|ref|YP_842656.1| - 1e-05 26.0 0.3 0.00011 22.7 0.3 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|116753538|ref|YP_842656.1| - 0.00067 19.6 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|116753538|ref|YP_842656.1| - 0.00075 19.3 0.0 0.017 14.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 gi|116753538|ref|YP_842656.1| - 0.0025 18.1 0.1 0.01 16.1 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|116753538|ref|YP_842656.1| - 0.0032 17.7 0.2 0.026 14.8 0.1 2.3 2 1 0 2 2 2 1 AAA domain PduV-EutP PF10662.9 gi|116753538|ref|YP_842656.1| - 0.009 15.8 0.0 0.044 13.5 0.0 2.1 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.6 gi|116753538|ref|YP_842656.1| - 0.0098 16.1 0.0 0.027 14.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|116753538|ref|YP_842656.1| - 0.01 16.3 0.1 0.02 15.3 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|116753538|ref|YP_842656.1| - 0.016 15.7 0.0 0.026 15.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|116753538|ref|YP_842656.1| - 0.018 15.0 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|116753538|ref|YP_842656.1| - 0.02 14.7 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|116753538|ref|YP_842656.1| - 0.028 14.3 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain NACHT PF05729.12 gi|116753538|ref|YP_842656.1| - 0.032 14.2 0.1 0.072 13.0 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|116753538|ref|YP_842656.1| - 0.036 13.7 0.0 0.065 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|116753538|ref|YP_842656.1| - 0.04 14.5 0.0 0.087 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|116753538|ref|YP_842656.1| - 0.063 13.3 0.0 0.18 11.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|116753538|ref|YP_842656.1| - 0.067 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein TsaE PF02367.17 gi|116753538|ref|YP_842656.1| - 0.078 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|116753538|ref|YP_842656.1| - 0.15 11.3 0.1 0.25 10.5 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 gi|116753538|ref|YP_842656.1| - 0.15 11.4 0.0 0.64 9.4 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SMC_N PF02463.19 gi|116753538|ref|YP_842656.1| - 0.17 11.3 0.0 17 4.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain RNA_helicase PF00910.22 gi|116753538|ref|YP_842656.1| - 0.2 12.1 0.0 0.4 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Fe-ADH_2 PF13685.6 gi|116753539|ref|YP_842657.1| - 1.3e-68 231.4 0.6 1.6e-68 231.1 0.6 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|116753539|ref|YP_842657.1| - 2.1e-25 89.3 4.8 4.9e-25 88.1 4.8 1.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|116753539|ref|YP_842657.1| - 3.5e-05 23.1 0.1 9.4e-05 21.7 0.1 1.7 1 1 0 1 1 1 1 3-dehydroquinate synthase UPF0179 PF03684.13 gi|116753540|ref|YP_842658.1| - 1.8e-54 183.5 0.6 2e-54 183.3 0.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Radical_SAM PF04055.21 gi|116753541|ref|YP_842659.1| - 3.6e-16 60.0 0.0 3.9e-15 56.6 0.0 2.2 1 1 1 2 2 2 2 Radical SAM superfamily F420H2_quin_red PF04075.14 gi|116753542|ref|YP_842660.1| - 1.2e-09 38.3 0.0 1.7e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 F420H(2)-dependent quinone reductase Pyridox_ox_2 PF12900.7 gi|116753542|ref|YP_842660.1| - 0.038 14.0 0.0 0.094 12.7 0.0 1.7 2 0 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase T2SSE PF00437.20 gi|116753543|ref|YP_842661.1| - 1.2e-10 41.0 0.0 2e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|116753543|ref|YP_842661.1| - 1.1e-08 35.5 0.2 3.6e-08 33.9 0.0 2.0 2 0 0 2 2 1 1 PIN domain KH_1 PF00013.29 gi|116753543|ref|YP_842661.1| - 1.6e-08 34.3 0.6 4.7e-08 32.7 0.6 1.8 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|116753543|ref|YP_842661.1| - 6.8e-06 25.8 0.4 4e-05 23.3 0.4 2.4 1 0 0 1 1 1 1 KH domain AAA_16 PF13191.6 gi|116753543|ref|YP_842661.1| - 0.0005 20.5 0.0 0.0013 19.1 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|116753543|ref|YP_842661.1| - 0.0017 18.9 0.0 0.0038 17.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|116753543|ref|YP_842661.1| - 0.0026 17.7 0.0 0.0053 16.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) PIN_4 PF13638.6 gi|116753543|ref|YP_842661.1| - 0.003 17.8 0.0 0.0085 16.4 0.0 1.7 2 0 0 2 2 1 1 PIN domain AAA_29 PF13555.6 gi|116753543|ref|YP_842661.1| - 0.0037 17.0 0.0 0.009 15.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|116753543|ref|YP_842661.1| - 0.0066 16.4 0.0 0.03 14.2 0.0 2.1 2 0 0 2 2 1 1 NTPase AAA PF00004.29 gi|116753543|ref|YP_842661.1| - 0.01 16.3 0.0 0.023 15.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|116753543|ref|YP_842661.1| - 0.012 14.8 1.9 0.016 14.4 0.1 2.0 2 0 0 2 2 2 0 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|116753543|ref|YP_842661.1| - 0.012 15.0 0.0 0.031 13.6 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|116753543|ref|YP_842661.1| - 0.017 15.3 0.0 0.056 13.6 0.0 1.9 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.22 gi|116753543|ref|YP_842661.1| - 0.025 13.8 0.0 0.059 12.5 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain Zeta_toxin PF06414.12 gi|116753543|ref|YP_842661.1| - 0.032 13.5 0.0 0.069 12.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.12 gi|116753543|ref|YP_842661.1| - 0.033 14.1 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|116753543|ref|YP_842661.1| - 0.034 14.2 0.0 0.077 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|116753543|ref|YP_842661.1| - 0.037 14.3 0.0 0.13 12.5 0.0 1.9 2 0 0 2 2 1 0 AAA domain IstB_IS21 PF01695.17 gi|116753543|ref|YP_842661.1| - 0.043 13.5 0.0 0.074 12.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|116753543|ref|YP_842661.1| - 0.044 14.3 0.0 0.13 12.8 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|116753543|ref|YP_842661.1| - 0.048 13.4 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|116753543|ref|YP_842661.1| - 0.052 13.9 0.0 0.14 12.6 0.0 1.8 2 0 0 2 2 1 0 RNA helicase KH_5 PF13184.6 gi|116753543|ref|YP_842661.1| - 0.054 13.6 1.3 0.23 11.5 0.1 2.6 3 0 0 3 3 2 0 NusA-like KH domain KTI12 PF08433.10 gi|116753543|ref|YP_842661.1| - 0.099 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATP_bind_1 PF03029.17 gi|116753543|ref|YP_842661.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_11 PF13086.6 gi|116753543|ref|YP_842661.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|116753543|ref|YP_842661.1| - 0.12 12.0 0.0 0.3 10.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|116753543|ref|YP_842661.1| - 0.12 12.6 0.0 0.3 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|116753543|ref|YP_842661.1| - 0.15 12.5 0.7 0.56 10.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|116753543|ref|YP_842661.1| - 0.16 12.0 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_24 PF13479.6 gi|116753543|ref|YP_842661.1| - 0.2 11.4 0.1 0.42 10.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain Lactamase_B_3 PF13483.6 gi|116753545|ref|YP_842663.1| - 2.9e-50 170.4 0.1 4e-50 169.9 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|116753545|ref|YP_842663.1| - 6.6e-09 35.6 5.1 6.6e-06 25.8 0.1 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain GMP_synt_C PF00958.22 gi|116753546|ref|YP_842664.1| - 5.4e-33 112.9 0.0 1.3e-32 111.7 0.0 1.7 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|116753546|ref|YP_842664.1| - 2.3e-10 40.0 0.0 2.6e-05 23.5 0.0 2.1 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|116753546|ref|YP_842664.1| - 6.2e-05 22.6 0.0 0.00064 19.3 0.0 2.0 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|116753546|ref|YP_842664.1| - 0.00021 20.2 0.1 0.0069 15.2 0.1 2.1 2 0 0 2 2 2 1 tRNA methyl transferase ThiI PF02568.14 gi|116753546|ref|YP_842664.1| - 0.00024 20.7 0.3 0.0053 16.4 0.1 2.8 1 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 gi|116753546|ref|YP_842664.1| - 0.019 14.3 0.0 0.083 12.2 0.0 1.8 2 0 0 2 2 2 0 Arginosuccinate synthase ATP_bind_3 PF01171.20 gi|116753546|ref|YP_842664.1| - 0.068 12.9 0.0 0.1 12.3 0.0 1.5 1 1 0 1 1 1 0 PP-loop family Asn_synthase PF00733.21 gi|116753546|ref|YP_842664.1| - 0.092 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase MS_channel PF00924.18 gi|116753547|ref|YP_842665.1| - 1.1e-36 126.4 1.4 1.4e-36 126.0 1.4 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel PSP1 PF04468.12 gi|116753547|ref|YP_842665.1| - 0.069 13.4 0.0 0.13 12.6 0.0 1.5 1 1 0 1 1 1 0 PSP1 C-terminal conserved region HAS-barrel PF09378.10 gi|116753547|ref|YP_842665.1| - 0.11 12.6 0.1 0.25 11.5 0.1 1.5 1 0 0 1 1 1 0 HAS barrel domain Bacillus_PapR PF05968.11 gi|116753547|ref|YP_842665.1| - 8.2 6.4 5.5 0.87 9.5 0.4 1.9 2 0 0 2 2 2 0 Bacillus PapR protein Helicase_C PF00271.31 gi|116753548|ref|YP_842666.1| - 6e-25 87.7 0.0 4.5e-22 78.5 0.0 2.6 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|116753548|ref|YP_842666.1| - 5.7e-24 85.1 0.0 3.3e-23 82.6 0.0 2.1 2 0 0 2 2 2 1 ERCC4 domain DEAD PF00270.29 gi|116753548|ref|YP_842666.1| - 5.5e-19 68.6 0.0 1.2e-18 67.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|116753548|ref|YP_842666.1| - 1.3e-17 64.3 0.0 2.6e-17 63.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|116753548|ref|YP_842666.1| - 2.1e-12 47.4 0.2 8.3e-11 42.3 0.0 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|116753548|ref|YP_842666.1| - 3.4e-11 43.1 0.0 1.1e-10 41.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|116753548|ref|YP_842666.1| - 2.2e-08 33.6 0.3 0.0012 18.6 0.0 3.4 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|116753548|ref|YP_842666.1| - 0.0022 18.3 0.0 0.37 11.2 0.0 3.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|116753548|ref|YP_842666.1| - 0.0033 18.0 0.1 0.088 13.4 0.0 3.2 2 2 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.7 gi|116753548|ref|YP_842666.1| - 0.0072 16.6 0.0 0.48 10.7 0.0 3.0 2 1 0 2 2 2 1 Helix-hairpin-helix motif SecA_DEAD PF07517.14 gi|116753548|ref|YP_842666.1| - 0.016 14.5 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 SecA DEAD-like domain ERCC3_RAD25_C PF16203.5 gi|116753548|ref|YP_842666.1| - 0.038 13.2 0.0 0.067 12.4 0.0 1.3 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase AAA_22 PF13401.6 gi|116753548|ref|YP_842666.1| - 0.071 13.4 1.0 3.3 8.0 0.1 4.0 4 1 1 5 5 5 0 AAA domain GATase_7 PF13537.6 gi|116753550|ref|YP_842668.1| - 2.1e-22 79.3 0.0 3.4e-22 78.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|116753550|ref|YP_842668.1| - 2.4e-22 79.6 0.0 4.8e-22 78.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|116753550|ref|YP_842668.1| - 4.3e-08 32.4 0.0 4.5e-06 25.8 0.0 2.3 2 1 0 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|116753550|ref|YP_842668.1| - 4.8e-06 26.2 0.2 9e-06 25.3 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Ribosomal_L37e PF01907.19 gi|116753551|ref|YP_842669.1| - 3e-22 78.5 13.0 3.3e-22 78.4 13.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-HIT PF04438.16 gi|116753551|ref|YP_842669.1| - 0.025 14.4 5.5 1.1 9.2 0.7 2.2 2 0 0 2 2 2 0 HIT zinc finger MraY_sig1 PF10555.9 gi|116753551|ref|YP_842669.1| - 0.23 11.1 1.3 0.36 10.4 1.3 1.3 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 zn-ribbon_14 PF16503.5 gi|116753551|ref|YP_842669.1| - 0.35 10.4 5.0 1.6 8.3 4.7 2.2 1 1 1 2 2 2 0 Zinc-ribbon Rubredoxin_2 PF18073.1 gi|116753551|ref|YP_842669.1| - 0.77 9.5 5.7 11 5.8 0.3 2.9 3 0 0 3 3 3 0 Rubredoxin metal binding domain LSM PF01423.22 gi|116753552|ref|YP_842670.1| - 7e-23 80.1 0.1 7.6e-23 80.0 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|116753552|ref|YP_842670.1| - 0.0039 17.3 0.0 0.0043 17.2 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain PUA PF01472.20 gi|116753553|ref|YP_842671.1| - 3.1e-16 59.1 1.0 3.1e-16 59.1 1.0 1.6 2 0 0 2 2 2 1 PUA domain UPF0113 PF03657.13 gi|116753553|ref|YP_842671.1| - 0.00074 19.7 0.0 0.0012 19.1 0.0 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain DUF1947 PF09183.10 gi|116753553|ref|YP_842671.1| - 0.0028 17.9 0.0 0.0047 17.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|116753553|ref|YP_842671.1| - 0.046 14.4 0.0 0.15 12.7 0.0 1.8 1 1 0 1 1 1 0 Pre-PUA-like domain PriA_CRR PF18319.1 gi|116753555|ref|YP_842673.1| - 0.013 15.5 0.9 0.022 14.7 0.9 1.3 1 0 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain DHH PF01368.20 gi|116753556|ref|YP_842674.1| - 5.5e-30 103.6 0.6 8.9e-30 102.9 0.6 1.3 1 0 0 1 1 1 1 DHH family DHHA2 PF02833.14 gi|116753556|ref|YP_842674.1| - 2.2e-24 86.3 0.9 3.4e-24 85.7 0.9 1.3 1 0 0 1 1 1 1 DHHA2 domain YmgD PF16456.5 gi|116753556|ref|YP_842674.1| - 0.031 14.3 0.0 0.083 13.0 0.0 1.7 1 0 0 1 1 1 0 YmgD protein DNA_photolyase PF00875.18 gi|116753557|ref|YP_842675.1| - 1.6e-12 47.7 0.0 1.8e-12 47.6 0.0 1.1 1 0 0 1 1 1 1 DNA photolyase Tubulin PF00091.25 gi|116753558|ref|YP_842676.1| - 8.1e-35 120.8 0.0 1.4e-34 120.0 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|116753558|ref|YP_842676.1| - 2.5e-06 27.0 0.0 9.1e-06 25.1 0.0 2.0 1 1 1 2 2 2 1 Tubulin like DUF11 PF01345.18 gi|116753559|ref|YP_842677.1| - 2.1e-13 50.4 0.8 1.3e-10 41.4 0.0 2.6 2 1 0 2 2 2 2 Domain of unknown function DUF11 TRAP_beta PF05753.14 gi|116753559|ref|YP_842677.1| - 1.8e-11 43.7 0.3 2.2e-08 33.7 0.3 2.4 1 1 1 2 2 2 2 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|116753559|ref|YP_842677.1| - 1.7e-10 41.0 0.2 6.6e-05 23.1 0.0 2.5 2 0 0 2 2 2 2 CARDB NPCBM_assoc PF10633.9 gi|116753559|ref|YP_842677.1| - 4.3e-06 26.9 0.1 0.094 13.0 0.1 3.1 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase BatD PF13584.6 gi|116753559|ref|YP_842677.1| - 0.00014 20.8 6.7 0.00099 18.0 6.7 2.1 1 1 0 1 1 1 1 Oxygen tolerance Arrestin_C PF02752.22 gi|116753559|ref|YP_842677.1| - 0.039 14.4 0.5 13 6.2 0.0 2.5 2 0 0 2 2 2 0 Arrestin (or S-antigen), C-terminal domain DUF4352 PF11611.8 gi|116753559|ref|YP_842677.1| - 0.067 13.5 1.0 8.7 6.7 0.4 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4352) BsuPI PF12690.7 gi|116753559|ref|YP_842677.1| - 0.16 12.0 2.8 16 5.6 0.0 3.5 4 0 0 4 4 4 0 Intracellular proteinase inhibitor TTc_toxin_rep PF18807.1 gi|116753559|ref|YP_842677.1| - 0.26 11.2 0.6 0.5 10.2 0.6 1.5 1 0 0 1 1 1 0 Tripartite Tc toxins repeat Cohesin PF00963.18 gi|116753559|ref|YP_842677.1| - 1 9.6 4.8 0.23 11.7 0.7 2.0 2 0 0 2 2 2 0 Cohesin domain QRPTase_C PF01729.19 gi|116753560|ref|YP_842678.1| - 1e-58 197.9 0.3 1.3e-58 197.5 0.3 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|116753560|ref|YP_842678.1| - 8.6e-25 86.6 0.0 1.8e-24 85.6 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain TMP-TENI PF02581.17 gi|116753560|ref|YP_842678.1| - 0.00014 21.3 0.3 0.00024 20.5 0.3 1.4 1 0 0 1 1 1 1 Thiamine monophosphate synthase KDGP_aldolase PF07071.11 gi|116753560|ref|YP_842678.1| - 0.034 13.9 0.2 0.058 13.2 0.2 1.3 1 0 0 1 1 1 0 KDGP aldolase Ribul_P_3_epim PF00834.19 gi|116753560|ref|YP_842678.1| - 0.037 13.4 0.4 1.7 8.0 0.0 2.2 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family Fis1_TPR_N PF14852.6 gi|116753560|ref|YP_842678.1| - 0.061 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat DUF108 PF01958.18 gi|116753561|ref|YP_842679.1| - 1e-30 105.9 0.3 1e-30 105.9 0.3 1.5 2 0 0 2 2 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|116753561|ref|YP_842679.1| - 2.7e-23 82.8 0.1 5.9e-23 81.7 0.1 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|116753561|ref|YP_842679.1| - 2.6e-07 30.8 0.0 5.7e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 gi|116753561|ref|YP_842679.1| - 4.4e-06 27.2 0.8 9.1e-06 26.2 0.8 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|116753561|ref|YP_842679.1| - 1.8e-05 25.5 0.1 3.4e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|116753561|ref|YP_842679.1| - 0.00075 18.9 0.0 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|116753561|ref|YP_842679.1| - 0.0026 18.0 0.1 0.0065 16.7 0.1 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|116753561|ref|YP_842679.1| - 0.0066 16.9 0.0 0.011 16.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|116753561|ref|YP_842679.1| - 0.0073 17.0 0.3 0.013 16.2 0.3 1.4 1 0 0 1 1 1 1 CoA binding domain NAD_binding_2 PF03446.15 gi|116753561|ref|YP_842679.1| - 0.014 15.5 0.1 0.023 14.9 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Rossmann-like PF10727.9 gi|116753561|ref|YP_842679.1| - 0.045 13.6 0.5 0.083 12.7 0.5 1.5 1 0 0 1 1 1 0 Rossmann-like domain NAD_Gly3P_dh_C PF07479.14 gi|116753561|ref|YP_842679.1| - 0.13 12.5 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DUF2122 PF09895.9 gi|116753561|ref|YP_842679.1| - 0.17 12.3 1.3 0.23 11.9 0.2 1.8 2 0 0 2 2 2 0 RecB-family nuclease (DUF2122) DUF1890 PF09001.11 gi|116753562|ref|YP_842680.1| - 4.9e-53 179.3 0.0 5.5e-53 179.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) DUF1894 PF08979.11 gi|116753563|ref|YP_842681.1| - 7.7e-34 115.9 0.0 9e-34 115.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) Flavoprotein PF02441.19 gi|116753564|ref|YP_842682.1| - 2.1e-15 56.8 0.0 2.6e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein S-layer PF07752.11 gi|116753565|ref|YP_842683.1| - 0.00018 20.6 0.0 0.00022 20.4 0.0 1.2 1 0 0 1 1 1 1 S-layer protein Peptidase_M22 PF00814.25 gi|116753566|ref|YP_842684.1| - 9.4e-87 291.1 0.0 1.2e-86 290.8 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family GARS_A PF01071.19 gi|116753567|ref|YP_842685.1| - 1.5e-58 197.8 0.0 2.3e-58 197.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|116753567|ref|YP_842685.1| - 5e-26 91.3 0.0 8.3e-26 90.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|116753567|ref|YP_842685.1| - 2.7e-22 78.8 0.4 8.1e-22 77.3 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_ST PF14397.6 gi|116753567|ref|YP_842685.1| - 0.015 14.5 0.0 0.046 13.0 0.0 1.7 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|116753567|ref|YP_842685.1| - 0.015 14.8 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|116753567|ref|YP_842685.1| - 0.036 14.1 0.0 10 6.1 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|116753567|ref|YP_842685.1| - 0.16 11.5 0.0 0.44 10.1 0.0 1.6 2 0 0 2 2 2 0 ATP-grasp domain Gln-synt_C PF00120.24 gi|116753568|ref|YP_842686.1| - 6.3e-132 439.8 0.0 7.3e-132 439.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|116753568|ref|YP_842686.1| - 1.7e-32 111.0 0.0 2.7e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|116753568|ref|YP_842686.1| - 0.035 13.9 0.0 0.14 12.0 0.0 2.0 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain LMWPc PF01451.21 gi|116753569|ref|YP_842687.1| - 2.6e-22 79.7 0.0 3.8e-22 79.2 0.0 1.3 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Radical_SAM PF04055.21 gi|116753570|ref|YP_842688.1| - 4.9e-08 33.5 0.1 2.4e-07 31.3 0.0 2.2 2 2 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.7 gi|116753570|ref|YP_842688.1| - 1.6e-07 31.4 0.0 6.7e-07 29.5 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|116753570|ref|YP_842688.1| - 4.3e-05 23.2 0.0 0.00011 21.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|116753570|ref|YP_842688.1| - 0.0016 19.0 0.0 0.0039 17.8 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|116753570|ref|YP_842688.1| - 0.013 15.6 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif Fer4_12 PF13353.6 gi|116753570|ref|YP_842688.1| - 0.048 13.9 0.1 0.13 12.6 0.1 1.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain MCH PF02289.16 gi|116753571|ref|YP_842689.1| - 8.3e-126 419.5 0.1 9.3e-126 419.3 0.1 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) AIM24 PF01987.17 gi|116753572|ref|YP_842690.1| - 4.8e-64 215.9 0.0 5.5e-64 215.7 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 GDE_C PF06202.14 gi|116753573|ref|YP_842691.1| - 9e-113 377.1 0.0 1.6e-112 376.2 0.0 1.3 2 0 0 2 2 2 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|116753573|ref|YP_842691.1| - 7.5e-66 221.7 0.0 1.3e-65 220.9 0.0 1.4 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Glyco_hydro_100 PF12899.7 gi|116753573|ref|YP_842691.1| - 0.00017 20.4 0.0 0.45 9.1 0.0 2.1 2 0 0 2 2 2 2 Alkaline and neutral invertase Glyco_hydro_63 PF03200.16 gi|116753573|ref|YP_842691.1| - 0.011 14.5 0.0 0.045 12.5 0.0 1.8 1 1 1 2 2 2 0 Glycosyl hydrolase family 63 C-terminal domain Glyco_hydro_57 PF03065.15 gi|116753574|ref|YP_842692.1| - 1.1e-59 202.3 0.1 1.7e-59 201.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|116753574|ref|YP_842692.1| - 0.00013 21.8 0.0 0.00032 20.6 0.0 1.7 2 0 0 2 2 2 1 Polysaccharide deacetylase UbiA PF01040.18 gi|116753575|ref|YP_842693.1| - 5.3e-18 65.2 21.4 1.1e-17 64.2 21.5 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family Ycf4 PF02392.16 gi|116753575|ref|YP_842693.1| - 1.3 8.6 4.2 13 5.3 0.4 2.3 1 1 1 2 2 2 0 Ycf4 dCMP_cyt_deam_1 PF00383.23 gi|116753576|ref|YP_842694.1| - 1.1e-30 105.4 1.4 1.4e-30 105.1 1.4 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|116753576|ref|YP_842694.1| - 1e-20 73.9 0.4 1.3e-20 73.6 0.4 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|116753576|ref|YP_842694.1| - 0.00014 21.9 0.4 0.00031 20.8 0.4 1.6 1 1 0 1 1 1 1 Bd3614-like deaminase APOBEC_N PF08210.11 gi|116753576|ref|YP_842694.1| - 0.0022 17.9 1.2 0.009 15.9 1.2 1.9 1 1 0 1 1 1 1 APOBEC-like N-terminal domain zf-C3HC4 PF00097.25 gi|116753576|ref|YP_842694.1| - 0.054 13.4 1.2 0.054 13.4 1.2 2.0 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) SNAD4 PF18750.1 gi|116753576|ref|YP_842694.1| - 0.062 13.4 0.6 0.2 11.8 0.6 1.8 1 1 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC3 PF18771.1 gi|116753576|ref|YP_842694.1| - 0.14 12.3 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 APOBEC3 NAD1 PF18778.1 gi|116753576|ref|YP_842694.1| - 0.14 12.2 0.9 0.25 11.4 0.7 1.5 1 1 1 2 2 2 0 Novel AID APOBEC clade 1 APOBEC2 PF18772.1 gi|116753576|ref|YP_842694.1| - 0.34 10.9 1.2 0.98 9.4 1.2 1.8 1 1 0 1 1 1 0 APOBEC2 NTP_transferase PF00483.23 gi|116753577|ref|YP_842695.1| - 2.3e-35 122.4 0.0 5.4e-35 121.2 0.0 1.6 2 0 0 2 2 2 1 Nucleotidyl transferase Hexapep PF00132.24 gi|116753577|ref|YP_842695.1| - 3.1e-13 48.9 5.1 1.4e-06 27.8 1.2 3.5 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 gi|116753577|ref|YP_842695.1| - 0.0077 14.4 0.4 0.012 13.8 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Hexapep_2 PF14602.6 gi|116753577|ref|YP_842695.1| - 0.016 14.9 0.8 0.28 11.0 0.1 2.8 2 0 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.7 gi|116753577|ref|YP_842695.1| - 0.023 15.0 0.0 0.043 14.2 0.0 1.5 1 0 0 1 1 1 0 MobA-like NTP transferase domain MCM PF00493.23 gi|116753578|ref|YP_842696.1| - 2.4e-96 321.2 0.0 3.3e-96 320.7 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|116753578|ref|YP_842696.1| - 1.8e-37 128.0 0.0 2.8e-37 127.4 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|116753578|ref|YP_842696.1| - 4.1e-28 97.6 0.1 1.2e-27 96.1 0.1 1.9 1 0 0 1 1 1 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|116753578|ref|YP_842696.1| - 1.2e-08 34.6 0.1 3.1e-06 26.7 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|116753578|ref|YP_842696.1| - 9.8e-08 32.1 0.0 2.3e-07 30.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM_N PF14551.6 gi|116753578|ref|YP_842696.1| - 2.3e-07 31.3 0.1 2.9e-06 27.8 0.0 2.7 2 1 1 3 3 3 1 MCM N-terminal domain AAA_3 PF07726.11 gi|116753578|ref|YP_842696.1| - 6.3e-06 26.1 0.0 2e-05 24.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AbiEi_4 PF13338.6 gi|116753578|ref|YP_842696.1| - 0.00025 21.1 0.2 0.0019 18.3 0.1 2.6 3 0 0 3 3 3 1 Transcriptional regulator, AbiEi antitoxin Sigma54_activat PF00158.26 gi|116753578|ref|YP_842696.1| - 0.001 18.8 0.0 0.0094 15.7 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|116753578|ref|YP_842696.1| - 0.0055 17.1 0.5 0.019 15.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain HTH_47 PF16221.5 gi|116753578|ref|YP_842696.1| - 0.03 13.9 0.0 0.29 10.7 0.1 2.3 2 0 0 2 2 2 0 winged helix-turn-helix AAA PF00004.29 gi|116753578|ref|YP_842696.1| - 0.077 13.4 0.0 0.3 11.5 0.0 2.0 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Zn-ribbon_8 PF09723.10 gi|116753578|ref|YP_842696.1| - 0.11 12.7 3.0 0.25 11.5 3.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain AMP-binding_C_2 PF14535.6 gi|116753579|ref|YP_842697.1| - 7.7e-35 119.1 0.1 1.6e-34 118.1 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|116753579|ref|YP_842697.1| - 2.9e-17 62.4 1.3 3.4e-17 62.1 0.1 1.6 2 0 0 2 2 2 1 AMP-binding enzyme GH3 PF03321.13 gi|116753579|ref|YP_842697.1| - 0.0004 19.4 0.0 0.14 11.0 0.0 2.2 2 0 0 2 2 2 2 GH3 auxin-responsive promoter ACT PF01842.25 gi|116753580|ref|YP_842698.1| - 1.2e-19 69.8 0.2 1.1e-09 37.9 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|116753580|ref|YP_842698.1| - 4.2e-08 33.7 0.2 0.0023 18.5 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|116753580|ref|YP_842698.1| - 6.2e-07 29.1 0.1 0.0087 15.8 0.0 2.7 2 1 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|116753580|ref|YP_842698.1| - 0.017 15.1 0.0 0.3 11.1 0.0 2.3 1 1 0 2 2 2 0 ACT domain DUF4840 PF16128.5 gi|116753580|ref|YP_842698.1| - 0.04 14.0 0.0 0.061 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4840) ACT_5 PF13710.6 gi|116753580|ref|YP_842698.1| - 0.12 12.2 0.0 0.84 9.5 0.0 2.3 2 1 1 3 3 3 0 ACT domain Glyoxalase PF00903.25 gi|116753580|ref|YP_842698.1| - 0.12 12.6 0.0 0.52 10.5 0.0 2.0 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Rep_fac_C PF08542.11 gi|116753581|ref|YP_842699.1| - 2.1e-22 79.3 0.0 5.3e-22 78.0 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|116753581|ref|YP_842699.1| - 1.7e-16 60.8 0.0 3.2e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|116753581|ref|YP_842699.1| - 2.8e-13 49.9 0.0 2.7e-09 37.0 0.0 2.4 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA_16 PF13191.6 gi|116753581|ref|YP_842699.1| - 1.1e-05 25.9 0.2 0.01 16.2 0.0 2.9 2 1 1 3 3 3 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|116753581|ref|YP_842699.1| - 3.8e-05 24.0 0.2 9.8e-05 22.6 0.2 1.7 1 1 0 1 1 1 1 AAA C-terminal domain RuvB_N PF05496.12 gi|116753581|ref|YP_842699.1| - 6.6e-05 22.7 0.1 0.0011 18.8 0.0 2.6 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|116753581|ref|YP_842699.1| - 0.00078 18.9 0.0 0.27 10.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|116753581|ref|YP_842699.1| - 0.00084 18.6 0.0 0.013 14.7 0.0 2.2 1 1 1 2 2 2 1 TIP49 P-loop domain ResIII PF04851.15 gi|116753581|ref|YP_842699.1| - 0.00092 19.3 0.0 0.014 15.4 0.0 2.2 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_3 PF07726.11 gi|116753581|ref|YP_842699.1| - 0.001 18.9 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|116753581|ref|YP_842699.1| - 0.0016 18.0 0.0 0.11 12.0 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|116753581|ref|YP_842699.1| - 0.0035 17.1 0.0 0.021 14.6 0.0 2.2 3 0 0 3 3 3 1 IstB-like ATP binding protein DNA_pol3_delta PF06144.13 gi|116753581|ref|YP_842699.1| - 0.0062 16.3 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit SNF2_N PF00176.23 gi|116753581|ref|YP_842699.1| - 0.0063 15.3 0.0 0.04 12.6 0.0 1.9 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|116753581|ref|YP_842699.1| - 0.0074 16.6 0.2 6.9 6.9 0.0 2.6 2 1 0 3 3 3 1 AAA domain AAA_5 PF07728.14 gi|116753581|ref|YP_842699.1| - 0.016 15.2 0.1 0.33 11.0 0.1 2.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|116753581|ref|YP_842699.1| - 0.017 14.8 0.0 3.5 7.3 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|116753581|ref|YP_842699.1| - 0.083 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|116753581|ref|YP_842699.1| - 0.085 12.4 0.1 0.39 10.2 0.0 2.0 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|116753581|ref|YP_842699.1| - 0.12 12.8 0.0 0.3 11.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Torsin PF06309.11 gi|116753581|ref|YP_842699.1| - 0.15 12.2 0.0 0.47 10.6 0.0 1.8 2 0 0 2 2 2 0 Torsin Gpr1_Fun34_YaaH PF01184.19 gi|116753582|ref|YP_842700.1| - 1.9e-41 141.9 19.5 2.5e-41 141.5 19.5 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family DUF983 PF06170.12 gi|116753582|ref|YP_842700.1| - 0.64 10.5 6.0 0.15 12.5 1.9 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF983) Metallophos_2 PF12850.7 gi|116753583|ref|YP_842701.1| - 1.5e-10 41.5 0.0 1.5e-08 35.0 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|116753583|ref|YP_842701.1| - 5.1e-05 23.9 0.1 0.00012 22.6 0.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase TFIIB PF00382.19 gi|116753584|ref|YP_842702.1| - 2.4e-44 149.2 3.5 6.3e-22 77.4 1.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|116753584|ref|YP_842702.1| - 7.2e-19 67.0 1.2 7.2e-19 67.0 1.2 1.8 2 0 0 2 2 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|116753584|ref|YP_842702.1| - 0.0033 17.2 0.0 0.14 11.9 0.0 2.3 1 1 1 2 2 2 1 Cyclin, N-terminal domain HTH_AsnC-type PF13404.6 gi|116753584|ref|YP_842702.1| - 0.0044 16.8 2.1 0.036 13.9 0.1 3.1 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Cyclin_C PF02984.19 gi|116753584|ref|YP_842702.1| - 0.0057 16.7 0.0 2.8 8.0 0.0 2.4 2 0 0 2 2 2 1 Cyclin, C-terminal domain Lar_restr_allev PF14354.6 gi|116753584|ref|YP_842702.1| - 0.0064 16.8 0.4 0.18 12.2 0.2 2.5 2 0 0 2 2 2 1 Restriction alleviation protein Lar Sigma70_r4 PF04545.16 gi|116753584|ref|YP_842702.1| - 0.0082 15.6 7.6 0.072 12.6 0.0 3.9 4 0 0 4 4 4 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.11 gi|116753584|ref|YP_842702.1| - 0.011 15.6 0.3 0.029 14.3 0.3 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|116753584|ref|YP_842702.1| - 0.018 14.4 0.2 1.7 8.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RB_B PF01857.20 gi|116753584|ref|YP_842702.1| - 0.031 14.3 0.1 0.087 12.9 0.0 1.8 2 0 0 2 2 1 0 Retinoblastoma-associated protein B domain Terminase_GpA PF05876.12 gi|116753584|ref|YP_842702.1| - 0.034 12.7 0.2 0.049 12.2 0.2 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) RPA_interact_C PF14768.6 gi|116753584|ref|YP_842702.1| - 0.036 14.6 0.0 2.5 8.7 0.0 2.5 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HTH_3 PF01381.22 gi|116753584|ref|YP_842702.1| - 0.041 13.9 0.1 3.7 7.7 0.0 3.7 3 1 1 4 4 4 0 Helix-turn-helix DZR PF12773.7 gi|116753584|ref|YP_842702.1| - 0.046 13.7 0.6 0.38 10.8 0.2 2.3 2 0 0 2 2 2 0 Double zinc ribbon Ribosomal_S27e PF01667.17 gi|116753584|ref|YP_842702.1| - 0.053 13.2 0.1 0.15 11.8 0.1 1.7 1 0 0 1 1 1 0 Ribosomal protein S27 HTH_Crp_2 PF13545.6 gi|116753584|ref|YP_842702.1| - 0.059 13.4 2.7 8.4 6.5 0.0 3.5 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain Prim_Zn_Ribbon PF08273.12 gi|116753584|ref|YP_842702.1| - 0.059 13.7 1.7 0.09 13.1 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-ACC PF17848.1 gi|116753584|ref|YP_842702.1| - 0.076 13.1 3.9 3.8 7.7 2.2 2.9 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn_Tnp_IS1595 PF12760.7 gi|116753584|ref|YP_842702.1| - 0.11 12.5 0.3 0.11 12.5 0.3 1.9 2 0 0 2 2 1 0 Transposase zinc-ribbon domain HTH_31 PF13560.6 gi|116753584|ref|YP_842702.1| - 0.12 12.8 6.4 5.6 7.4 0.1 4.0 4 1 0 4 4 3 0 Helix-turn-helix domain HypA PF01155.19 gi|116753584|ref|YP_842702.1| - 0.14 12.2 1.7 1.5 8.8 0.6 2.5 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|116753584|ref|YP_842702.1| - 0.16 11.8 1.0 7.4 6.4 0.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|116753584|ref|YP_842702.1| - 0.26 11.4 5.3 0.59 10.3 0.3 3.0 2 1 2 4 4 4 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|116753584|ref|YP_842702.1| - 0.28 10.9 1.1 1.8 8.4 1.1 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-Mss51 PF13824.6 gi|116753584|ref|YP_842702.1| - 0.36 11.0 1.9 33 4.7 0.3 3.7 3 1 1 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 Auto_anti-p27 PF06677.12 gi|116753584|ref|YP_842702.1| - 0.6 10.3 2.4 4.1 7.6 0.9 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) SR1P PF13790.6 gi|116753584|ref|YP_842702.1| - 0.68 10.1 2.4 37 4.5 0.0 2.8 3 0 0 3 3 2 0 SR1 protein HTH_23 PF13384.6 gi|116753584|ref|YP_842702.1| - 2.6 7.9 7.0 1 9.2 0.1 3.6 3 1 0 3 3 3 0 Homeodomain-like domain zf_UBZ PF18439.1 gi|116753584|ref|YP_842702.1| - 2.8 7.6 5.0 21 4.8 0.0 2.8 3 0 0 3 3 2 0 Ubiquitin-Binding Zinc Finger Nudix_N_2 PF14803.6 gi|116753584|ref|YP_842702.1| - 8.3 6.4 6.6 1.6 8.7 1.5 2.5 2 0 0 2 2 2 0 Nudix N-terminal Gar1 PF04410.14 gi|116753585|ref|YP_842703.1| - 1.8e-14 53.8 0.0 1.9e-14 53.7 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.16 gi|116753585|ref|YP_842703.1| - 0.072 13.2 0.1 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 PRC-barrel domain NOG1_N PF17835.1 gi|116753586|ref|YP_842704.1| - 9.5e-35 119.9 0.0 1.7e-34 119.1 0.0 1.4 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|116753586|ref|YP_842704.1| - 1.4e-22 79.2 0.0 2.4e-22 78.5 0.0 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|116753586|ref|YP_842704.1| - 2.9e-19 69.2 0.0 4.8e-19 68.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|116753586|ref|YP_842704.1| - 2.4e-10 40.2 0.0 3.8e-10 39.5 0.0 1.4 1 1 0 1 1 1 1 Ferrous iron transport protein B ATP_bind_1 PF03029.17 gi|116753586|ref|YP_842704.1| - 0.022 14.6 0.0 0.17 11.6 0.0 2.1 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein SRPRB PF09439.10 gi|116753586|ref|YP_842704.1| - 0.026 14.0 0.0 0.066 12.6 0.0 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF1699 PF08004.11 gi|116753587|ref|YP_842705.1| - 3.2e-54 182.1 0.0 3.6e-54 181.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF433 PF04255.14 gi|116753587|ref|YP_842705.1| - 0.026 14.4 0.0 0.5 10.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF433) HTH_38 PF13936.6 gi|116753587|ref|YP_842705.1| - 0.065 13.0 0.1 0.33 10.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Pentapeptide_3 PF13576.6 gi|116753588|ref|YP_842706.1| - 9.9e-22 76.8 50.8 1.1e-08 35.1 7.8 6.4 3 2 4 7 7 7 6 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.6 gi|116753588|ref|YP_842706.1| - 0.15 12.2 10.9 1.7 8.9 0.1 4.2 2 2 0 3 3 3 0 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|116753588|ref|YP_842706.1| - 1.2 8.9 9.5 6.1 6.6 0.1 5.7 6 3 0 5 5 5 0 Pentapeptide repeats (8 copies) RL PF17797.1 gi|116753589|ref|YP_842707.1| - 0.034 14.1 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 RL domain Selenoprotein_S PF06936.11 gi|116753589|ref|YP_842707.1| - 0.083 12.7 0.1 0.13 12.1 0.1 1.4 1 1 0 1 1 1 0 Selenoprotein S (SelS) HGTP_anticodon PF03129.20 gi|116753590|ref|YP_842708.1| - 2.2e-23 82.2 1.4 1.5e-22 79.6 0.0 2.8 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|116753590|ref|YP_842708.1| - 6.3e-11 42.6 0.0 2.1e-10 40.8 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Zn-ribbon_8 PF09723.10 gi|116753590|ref|YP_842708.1| - 0.0012 19.0 0.1 0.12 12.5 0.0 2.7 2 0 0 2 2 2 1 Zinc ribbon domain DUF2382 PF09557.10 gi|116753590|ref|YP_842708.1| - 0.068 13.4 2.1 0.12 12.7 0.2 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF2382) zf-C2H2 PF00096.26 gi|116753590|ref|YP_842708.1| - 0.28 11.7 2.5 2.3 8.8 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.6 gi|116753590|ref|YP_842708.1| - 0.36 10.3 1.4 0.51 9.8 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain TrmB PF01978.19 gi|116753591|ref|YP_842709.1| - 0.018 14.9 0.0 0.044 13.7 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB FixQ PF05545.11 gi|116753592|ref|YP_842710.1| - 0.031 14.2 0.1 0.065 13.2 0.1 1.6 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ IgaA PF07095.11 gi|116753592|ref|YP_842710.1| - 0.17 9.8 0.1 0.19 9.7 0.1 1.0 1 0 0 1 1 1 0 Intracellular growth attenuator protein IgaA SRP19 PF01922.17 gi|116753593|ref|YP_842711.1| - 6.8e-23 81.4 0.1 8.9e-23 81.1 0.1 1.2 1 0 0 1 1 1 1 SRP19 protein DUF211 PF02680.14 gi|116753594|ref|YP_842712.1| - 6.8e-39 131.9 2.6 7.8e-39 131.7 2.6 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 DUF86 PF01934.17 gi|116753594|ref|YP_842712.1| - 0.054 13.4 0.0 0.072 13.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function DUF86 YfmQ PF10787.9 gi|116753594|ref|YP_842712.1| - 0.11 12.2 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein from bacillus cereus group Inos-1-P_synth PF01658.17 gi|116753595|ref|YP_842713.1| - 8.8e-33 112.8 0.0 1.9e-32 111.8 0.0 1.6 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|116753595|ref|YP_842713.1| - 0.035 13.5 0.0 0.058 12.8 0.0 1.5 1 1 0 1 1 1 0 Myo-inositol-1-phosphate synthase DUF45 PF01863.17 gi|116753597|ref|YP_842715.1| - 4.3e-23 82.4 0.1 6.7e-21 75.3 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function DUF45 WLM PF08325.10 gi|116753597|ref|YP_842715.1| - 0.0026 17.8 0.1 0.029 14.5 0.0 2.1 2 0 0 2 2 2 1 WLM domain DUF4980 PF16352.5 gi|116753597|ref|YP_842715.1| - 0.03 14.3 0.0 0.1 12.6 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4980) Peptidase_M57 PF12388.8 gi|116753597|ref|YP_842715.1| - 0.049 13.2 0.0 0.063 12.9 0.0 1.2 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase SprT-like PF10263.9 gi|116753597|ref|YP_842715.1| - 0.17 11.8 0.2 0.56 10.1 0.0 2.0 2 1 0 2 2 2 0 SprT-like family MTS PF05175.14 gi|116753598|ref|YP_842716.1| - 3.4e-10 39.7 0.0 8.5e-08 31.9 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|116753598|ref|YP_842716.1| - 2.9e-06 27.2 0.0 4.9e-06 26.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|116753598|ref|YP_842716.1| - 4.9e-06 26.1 0.4 7.2e-06 25.6 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|116753598|ref|YP_842716.1| - 4.9e-05 23.2 0.0 0.00044 20.1 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116753598|ref|YP_842716.1| - 0.00017 22.2 0.0 0.00049 20.7 0.0 1.9 3 0 0 3 3 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|116753598|ref|YP_842716.1| - 0.002 18.8 0.1 0.012 16.3 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116753598|ref|YP_842716.1| - 0.0036 17.9 0.0 0.02 15.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain UPF0146 PF03686.13 gi|116753598|ref|YP_842716.1| - 0.0056 16.6 0.0 0.009 15.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_18 PF12847.7 gi|116753598|ref|YP_842716.1| - 0.0091 15.9 0.1 0.026 14.5 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|116753598|ref|YP_842716.1| - 0.021 13.9 0.0 0.029 13.3 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase NodS PF05401.11 gi|116753598|ref|YP_842716.1| - 0.18 11.4 0.1 0.38 10.3 0.0 1.5 2 0 0 2 2 2 0 Nodulation protein S (NodS) Met_10 PF02475.16 gi|116753598|ref|YP_842716.1| - 0.22 11.2 0.0 0.39 10.4 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Epimerase PF01370.21 gi|116753599|ref|YP_842717.1| - 1.8e-53 181.5 0.1 2.2e-53 181.2 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|116753599|ref|YP_842717.1| - 4.6e-48 164.3 0.0 1.5e-47 162.6 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|116753599|ref|YP_842717.1| - 1.5e-18 66.9 0.0 1.9e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|116753599|ref|YP_842717.1| - 7.6e-18 64.7 0.0 6.4e-17 61.6 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|116753599|ref|YP_842717.1| - 1e-17 64.1 0.0 1.3e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|116753599|ref|YP_842717.1| - 4.5e-12 46.2 0.0 1.5e-11 44.5 0.0 1.8 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|116753599|ref|YP_842717.1| - 6.8e-10 38.5 0.4 3.4e-05 23.1 0.0 2.7 1 1 0 2 2 2 2 Male sterility protein Sacchrp_dh_NADP PF03435.18 gi|116753599|ref|YP_842717.1| - 0.00023 21.4 0.0 0.00052 20.3 0.0 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|116753599|ref|YP_842717.1| - 0.00065 19.3 0.0 0.023 14.3 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.25 gi|116753599|ref|YP_842717.1| - 0.0022 17.5 0.0 0.13 11.7 0.0 2.3 2 0 0 2 2 2 1 short chain dehydrogenase DUF4292 PF14125.6 gi|116753599|ref|YP_842717.1| - 0.15 11.7 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4292) Methyltr_RsmB-F PF01189.17 gi|116753601|ref|YP_842719.1| - 2.3e-52 177.5 0.0 2.9e-52 177.2 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|116753601|ref|YP_842719.1| - 2.8e-11 43.8 0.0 4.7e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|116753601|ref|YP_842719.1| - 0.0001 22.5 0.0 0.00021 21.4 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.19 gi|116753601|ref|YP_842719.1| - 0.0026 17.5 0.0 0.0039 17.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|116753601|ref|YP_842719.1| - 0.0036 17.1 0.0 0.0048 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116753601|ref|YP_842719.1| - 0.023 15.4 0.0 0.1 13.3 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Methyltranf_PUA PF13636.6 gi|116753602|ref|YP_842720.1| - 6.4e-13 48.5 0.0 2.6e-12 46.5 0.0 1.8 2 0 0 2 2 2 1 RNA-binding PUA-like domain of methyltransferase RsmF Radical_SAM PF04055.21 gi|116753603|ref|YP_842721.1| - 1.9e-12 47.9 0.1 3.7e-12 46.9 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Aconitase PF00330.20 gi|116753604|ref|YP_842722.1| - 8.1e-112 374.5 0.7 8.7e-110 367.9 0.7 2.4 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|116753604|ref|YP_842722.1| - 3.3e-19 69.5 0.0 6.1e-19 68.6 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|116753604|ref|YP_842722.1| - 0.0022 16.8 0.0 0.0032 16.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_2_N PF06434.13 gi|116753604|ref|YP_842722.1| - 0.0056 16.3 0.0 0.01 15.5 0.0 1.5 1 0 0 1 1 1 1 Aconitate hydratase 2 N-terminus 4HBT PF03061.22 gi|116753605|ref|YP_842723.1| - 2.6e-19 69.4 0.1 3.4e-19 69.0 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|116753605|ref|YP_842723.1| - 6.1e-12 45.8 0.0 8.1e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|116753605|ref|YP_842723.1| - 8.9e-10 39.2 0.1 1e-09 39.0 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily CdhD PF03599.16 gi|116753606|ref|YP_842724.1| - 5e-128 427.1 0.1 6.1e-128 426.8 0.1 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|116753606|ref|YP_842724.1| - 3e-15 55.6 1.7 5.8e-15 54.7 1.7 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster Pterin_bind PF00809.22 gi|116753606|ref|YP_842724.1| - 0.023 14.4 0.1 1.6 8.4 0.0 2.2 2 0 0 2 2 2 0 Pterin binding enzyme CdhD PF03599.16 gi|116753607|ref|YP_842725.1| - 1e-82 277.9 0.3 1e-77 261.5 0.0 3.2 1 1 1 2 2 2 2 CO dehydrogenase/acetyl-CoA synthase delta subunit Pterin_bind PF00809.22 gi|116753607|ref|YP_842725.1| - 0.0041 16.8 0.1 0.064 12.9 0.1 2.3 1 1 0 1 1 1 1 Pterin binding enzyme HSP70 PF00012.20 gi|116753607|ref|YP_842725.1| - 0.053 11.7 0.0 0.09 10.9 0.0 1.3 1 0 0 1 1 1 0 Hsp70 protein CbiA PF01656.23 gi|116753608|ref|YP_842726.1| - 1e-19 70.9 0.1 1.3e-19 70.5 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|116753608|ref|YP_842726.1| - 5.1e-14 52.6 0.0 1.3e-13 51.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|116753608|ref|YP_842726.1| - 2.1e-10 40.3 1.5 3.2e-09 36.4 0.3 2.5 1 1 1 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|116753608|ref|YP_842726.1| - 7.8e-07 28.8 0.1 0.0017 17.9 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 gi|116753608|ref|YP_842726.1| - 1.9e-06 27.7 0.0 3.5e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|116753608|ref|YP_842726.1| - 7.5e-06 25.6 0.0 0.00034 20.2 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|116753608|ref|YP_842726.1| - 4.7e-05 23.0 0.2 0.00019 21.0 0.2 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase DUF87 PF01935.17 gi|116753608|ref|YP_842726.1| - 7.5e-05 22.9 0.4 0.00018 21.7 0.4 1.9 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_16 PF13191.6 gi|116753608|ref|YP_842726.1| - 0.00018 22.0 0.0 0.00038 20.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_26 PF13500.6 gi|116753608|ref|YP_842726.1| - 0.00025 20.9 1.3 0.17 11.7 0.3 2.5 2 1 0 2 2 2 2 AAA domain SRP54 PF00448.22 gi|116753608|ref|YP_842726.1| - 0.00077 19.1 0.2 0.082 12.5 0.1 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|116753608|ref|YP_842726.1| - 0.0019 18.1 0.4 0.85 9.5 0.2 2.3 2 0 0 2 2 2 1 NTPase APS_kinase PF01583.20 gi|116753608|ref|YP_842726.1| - 0.0027 17.6 0.0 0.005 16.7 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase ResIII PF04851.15 gi|116753608|ref|YP_842726.1| - 0.0035 17.4 0.0 0.0063 16.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|116753608|ref|YP_842726.1| - 0.0039 16.9 0.0 0.0057 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|116753608|ref|YP_842726.1| - 0.0093 15.0 0.3 0.017 14.1 0.3 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|116753608|ref|YP_842726.1| - 0.011 16.0 0.1 0.042 14.1 0.1 2.1 1 1 1 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|116753608|ref|YP_842726.1| - 0.015 15.1 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF2075 PF09848.9 gi|116753608|ref|YP_842726.1| - 0.015 14.5 0.0 0.027 13.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.6 gi|116753608|ref|YP_842726.1| - 0.02 15.4 0.0 0.092 13.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|116753608|ref|YP_842726.1| - 0.028 14.1 0.1 0.89 9.2 0.0 2.6 2 1 1 3 3 3 0 Thymidylate kinase Helicase_RecD PF05127.14 gi|116753608|ref|YP_842726.1| - 0.03 14.2 0.1 0.14 12.0 0.0 2.1 2 1 1 3 3 3 0 Helicase MipZ PF09140.11 gi|116753608|ref|YP_842726.1| - 0.032 13.5 0.6 1.5 8.1 0.1 2.2 2 0 0 2 2 2 0 ATPase MipZ ATPase PF06745.13 gi|116753608|ref|YP_842726.1| - 0.033 13.5 0.0 0.075 12.4 0.0 1.7 2 0 0 2 2 2 0 KaiC LpxK PF02606.14 gi|116753608|ref|YP_842726.1| - 0.076 12.1 0.3 0.13 11.4 0.3 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase RecA PF00154.21 gi|116753608|ref|YP_842726.1| - 0.079 12.4 0.2 0.25 10.8 0.0 1.9 2 0 0 2 2 2 0 recA bacterial DNA recombination protein NB-ARC PF00931.22 gi|116753608|ref|YP_842726.1| - 0.097 11.8 0.1 0.18 11.0 0.1 1.6 1 1 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|116753608|ref|YP_842726.1| - 0.097 12.2 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|116753608|ref|YP_842726.1| - 0.11 12.8 0.0 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|116753608|ref|YP_842726.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family CdhC PF03598.15 gi|116753609|ref|YP_842727.1| - 4.3e-60 202.1 0.9 6e-60 201.6 0.1 1.7 2 0 0 2 2 2 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit DUF4945 PF16303.5 gi|116753609|ref|YP_842727.1| - 0.2 11.6 0.8 1.6 8.7 0.1 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4945) CO_dh PF02552.16 gi|116753610|ref|YP_842728.1| - 2.5e-36 125.0 0.2 2.9e-36 124.8 0.2 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|116753610|ref|YP_842728.1| - 0.0003 20.5 0.0 0.00074 19.3 0.0 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.20 gi|116753611|ref|YP_842729.1| - 2.4e-93 313.6 7.8 1.1e-79 268.4 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_17 PF13534.6 gi|116753611|ref|YP_842729.1| - 3.8e-06 27.3 9.4 0.0036 17.8 0.3 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|116753611|ref|YP_842729.1| - 4.8e-06 26.9 6.8 0.048 14.1 3.0 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116753611|ref|YP_842729.1| - 9.3e-06 25.7 9.0 9.3e-06 25.7 9.0 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116753611|ref|YP_842729.1| - 5.1e-05 23.3 10.1 5.1e-05 23.3 10.1 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116753611|ref|YP_842729.1| - 0.00015 22.3 10.1 0.00015 22.3 10.1 3.2 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|116753611|ref|YP_842729.1| - 0.00062 19.5 20.3 0.0031 17.2 3.7 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|116753611|ref|YP_842729.1| - 0.013 15.6 8.6 0.032 14.4 0.8 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116753611|ref|YP_842729.1| - 0.038 14.9 14.0 2.8 9.0 4.3 3.0 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|116753611|ref|YP_842729.1| - 0.12 13.3 15.9 0.044 14.6 4.4 2.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116753611|ref|YP_842729.1| - 0.43 10.7 22.6 0.085 13.0 2.5 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|116753611|ref|YP_842729.1| - 0.96 10.1 14.3 0.94 10.1 5.0 3.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|116753611|ref|YP_842729.1| - 6.2 7.1 27.3 0.41 10.9 4.1 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain CobD_Cbib PF03186.13 gi|116753612|ref|YP_842730.1| - 9.2e-82 274.3 2.9 1.1e-81 274.1 2.9 1.1 1 0 0 1 1 1 1 CobD/Cbib protein GPI-anchored PF10342.9 gi|116753613|ref|YP_842731.1| - 0.028 15.2 3.6 0.084 13.6 0.8 2.6 2 0 0 2 2 2 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family Chondroitinas_B PF14592.6 gi|116753613|ref|YP_842731.1| - 0.029 13.3 0.1 0.041 12.8 0.1 1.1 1 0 0 1 1 1 0 Chondroitinase B GspH PF12019.8 gi|116753613|ref|YP_842731.1| - 1.9 8.9 4.5 1.8 9.0 0.7 2.7 2 1 0 2 2 2 0 Type II transport protein GspH zf-H2C2 PF09337.10 gi|116753614|ref|YP_842732.1| - 0.25 11.6 0.3 0.46 10.8 0.0 1.6 2 0 0 2 2 2 0 H2C2 zinc finger DNA_alkylation PF08713.11 gi|116753615|ref|YP_842733.1| - 6.6e-61 205.7 0.2 7.9e-61 205.5 0.2 1.1 1 0 0 1 1 1 1 DNA alkylation repair enzyme YvbH_ext PF11724.8 gi|116753615|ref|YP_842733.1| - 0.095 13.0 1.1 0.16 12.3 0.2 1.9 2 0 0 2 2 2 0 YvbH-like oligomerisation region Saccharop_dh_N PF04455.12 gi|116753616|ref|YP_842734.1| - 4.3e-37 126.5 0.0 8.9e-37 125.5 0.0 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|116753616|ref|YP_842734.1| - 0.0028 17.4 0.4 0.41 10.4 0.0 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain Sirohm_synth_M PF14824.6 gi|116753616|ref|YP_842734.1| - 0.14 11.6 0.1 0.58 9.7 0.0 2.1 2 0 0 2 2 2 0 Sirohaem biosynthesis protein central Lig_C PF18330.1 gi|116753617|ref|YP_842735.1| - 2.1e-41 140.9 1.3 4.1e-41 139.9 1.3 1.5 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|116753617|ref|YP_842735.1| - 3.4e-18 66.5 0.0 7.8e-18 65.3 0.0 1.6 2 0 0 2 2 2 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|116753617|ref|YP_842735.1| - 0.018 14.7 0.1 6.7 6.3 0.0 2.6 2 1 0 3 3 3 0 ATP dependent DNA ligase domain CBS PF00571.28 gi|116753618|ref|YP_842736.1| - 1.5e-41 140.6 12.0 7.4e-12 45.5 0.4 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|116753619|ref|YP_842737.1| - 6.1e-43 145.1 9.2 4.2e-15 55.9 0.1 4.2 4 0 0 4 4 4 4 CBS domain B_lectin PF01453.24 gi|116753619|ref|YP_842737.1| - 0.13 12.8 0.1 0.66 10.5 0.0 2.1 2 1 0 2 2 2 0 D-mannose binding lectin GCV_T_C PF08669.11 gi|116753619|ref|YP_842737.1| - 0.13 12.2 0.0 68 3.5 0.0 3.5 4 0 0 4 4 4 0 Glycine cleavage T-protein C-terminal barrel domain CBS PF00571.28 gi|116753620|ref|YP_842738.1| - 4.7e-48 161.5 9.7 3.7e-12 46.5 0.1 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|116753621|ref|YP_842739.1| - 4.1e-46 155.3 16.1 5.4e-16 58.8 0.4 4.1 4 0 0 4 4 4 4 CBS domain PRC PF05239.16 gi|116753621|ref|YP_842739.1| - 0.00043 20.3 0.2 1.1 9.4 0.0 2.9 2 1 0 2 2 2 2 PRC-barrel domain IF3_N PF05198.16 gi|116753621|ref|YP_842739.1| - 0.026 14.8 0.1 9.8 6.5 0.0 2.9 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain MAGP PF05507.11 gi|116753621|ref|YP_842739.1| - 0.052 14.0 0.0 0.085 13.3 0.0 1.4 1 0 0 1 1 1 0 Microfibril-associated glycoprotein (MAGP) CBS PF00571.28 gi|116753622|ref|YP_842740.1| - 1.5e-33 115.0 6.1 7.9e-18 64.7 0.3 2.3 2 0 0 2 2 2 2 CBS domain MoCF_biosynth PF00994.24 gi|116753623|ref|YP_842741.1| - 2.3e-27 95.4 0.1 2.7e-27 95.2 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Thiamine_BP PF01910.17 gi|116753625|ref|YP_842743.1| - 6.4e-26 90.1 0.8 7e-26 90.0 0.8 1.0 1 0 0 1 1 1 1 Thiamine-binding protein SSF PF00474.17 gi|116753626|ref|YP_842744.1| - 1.1e-54 185.9 37.3 1.4e-54 185.6 37.3 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family CDP-OH_P_transf PF01066.21 gi|116753627|ref|YP_842745.1| - 2.4e-12 47.4 2.5 2.4e-12 47.4 2.5 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.6 gi|116753628|ref|YP_842746.1| - 9e-26 91.0 0.0 1.1e-25 90.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|116753628|ref|YP_842746.1| - 0.00021 21.7 0.1 0.00057 20.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|116753628|ref|YP_842746.1| - 0.0005 20.3 0.5 0.0013 19.0 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|116753628|ref|YP_842746.1| - 0.0026 17.9 0.0 1.2 9.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain ABC_tran_CTD PF16326.5 gi|116753628|ref|YP_842746.1| - 0.086 13.1 0.3 0.19 12.0 0.3 1.5 1 0 0 1 1 1 0 ABC transporter C-terminal domain NTPase_1 PF03266.15 gi|116753628|ref|YP_842746.1| - 0.097 12.6 0.1 0.22 11.4 0.1 1.7 2 0 0 2 2 2 0 NTPase AAA_24 PF13479.6 gi|116753628|ref|YP_842746.1| - 0.21 11.3 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|116753628|ref|YP_842746.1| - 0.31 10.4 1.5 1.3 8.3 0.8 2.2 1 1 2 3 3 3 0 KaiC AAA_16 PF13191.6 gi|116753628|ref|YP_842746.1| - 0.49 10.8 2.6 4.6 7.6 2.6 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|116753628|ref|YP_842746.1| - 3 7.4 5.9 4.5 6.8 0.9 2.5 2 1 1 3 3 3 0 AAA domain Aminotran_1_2 PF00155.21 gi|116753629|ref|YP_842747.1| - 2.5e-49 168.4 0.0 3.1e-49 168.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|116753629|ref|YP_842747.1| - 1.5e-05 24.1 0.0 0.00031 19.7 0.0 2.0 2 0 0 2 2 2 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|116753629|ref|YP_842747.1| - 0.007 14.9 0.0 0.01 14.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_MocR PF12897.7 gi|116753629|ref|YP_842747.1| - 0.085 11.6 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase Aminotran_3 PF00202.21 gi|116753630|ref|YP_842748.1| - 1.1e-117 393.1 0.0 1.4e-117 392.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|116753630|ref|YP_842748.1| - 1.5e-05 24.3 0.0 2.2e-05 23.8 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|116753630|ref|YP_842748.1| - 5.5e-05 22.6 0.0 9.4e-05 21.8 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|116753630|ref|YP_842748.1| - 0.0033 16.8 0.0 0.0059 15.9 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|116753630|ref|YP_842748.1| - 0.0048 15.9 0.0 0.0097 14.9 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V ADH_zinc_N PF00107.26 gi|116753630|ref|YP_842748.1| - 0.0085 16.1 0.3 0.13 12.2 0.0 2.6 3 0 0 3 3 3 1 Zinc-binding dehydrogenase Zot PF05707.12 gi|116753630|ref|YP_842748.1| - 0.15 11.7 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Lactamase_B PF00753.27 gi|116753631|ref|YP_842749.1| - 6.2e-27 94.9 0.2 7.8e-27 94.6 0.2 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|116753631|ref|YP_842749.1| - 1.2e-06 28.2 0.0 1.4e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ThiC_Rad_SAM PF01964.18 gi|116753632|ref|YP_842750.1| - 7.9e-171 568.4 0.1 8.9e-171 568.3 0.1 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family PEP_mutase PF13714.6 gi|116753632|ref|YP_842750.1| - 0.0013 18.2 0.2 0.052 13.0 0.1 2.8 2 2 1 3 3 3 1 Phosphoenolpyruvate phosphomutase AbiEi_4 PF13338.6 gi|116753632|ref|YP_842750.1| - 0.11 12.6 0.1 0.35 11.0 0.1 1.9 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin PcrB PF01884.17 gi|116753632|ref|YP_842750.1| - 0.12 11.8 0.4 3.3 7.1 0.1 2.2 2 0 0 2 2 2 0 PcrB family NurA PF09376.10 gi|116753633|ref|YP_842751.1| - 2.3e-08 34.0 0.1 7.1e-05 22.6 0.2 2.1 2 0 0 2 2 2 2 NurA domain Amidohydro_2 PF04909.14 gi|116753633|ref|YP_842751.1| - 0.082 12.7 1.4 5.7 6.6 0.0 2.3 2 1 0 2 2 2 0 Amidohydrolase TraB PF01963.17 gi|116753634|ref|YP_842752.1| - 1.4e-30 107.0 0.1 2.8e-30 106.1 0.0 1.4 2 0 0 2 2 2 1 TraB family DUF2207 PF09972.9 gi|116753634|ref|YP_842752.1| - 5.7 5.6 7.1 5.1 5.7 5.3 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) CBS PF00571.28 gi|116753635|ref|YP_842753.1| - 3.3e-28 97.9 6.3 2.3e-15 56.7 0.7 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|116753635|ref|YP_842753.1| - 1.3e-13 50.8 12.2 2.3e-06 27.1 3.5 3.2 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|116753635|ref|YP_842753.1| - 0.00015 21.5 3.9 0.00015 21.5 3.9 2.4 2 1 0 2 2 2 1 Peptidase M50B-like DUF21 PF01595.20 gi|116753635|ref|YP_842753.1| - 5 6.8 10.4 0.7 9.6 0.2 3.0 3 0 0 3 3 3 0 Cyclin M transmembrane N-terminal domain DUF1690 PF07956.11 gi|116753636|ref|YP_842754.1| - 0.072 13.5 0.3 0.13 12.7 0.3 1.4 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) PolyA_pol_RNAbd PF12627.7 gi|116753636|ref|YP_842754.1| - 0.2 11.5 0.8 5.9 6.7 0.1 2.9 1 1 2 3 3 3 0 Probable RNA and SrmB- binding site of polymerase A Lactamase_B PF00753.27 gi|116753637|ref|YP_842755.1| - 6.5e-08 32.8 0.0 1.5e-07 31.6 0.0 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|116753637|ref|YP_842755.1| - 0.024 14.2 0.1 0.068 12.7 0.1 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.25 gi|116753637|ref|YP_842755.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin Flavodoxin_5 PF12724.7 gi|116753637|ref|YP_842755.1| - 0.19 12.0 0.0 0.31 11.3 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain NosD PF05048.13 gi|116753639|ref|YP_842757.1| - 2e-51 174.6 27.1 3.3e-47 160.8 21.1 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|116753639|ref|YP_842757.1| - 8.8e-19 67.9 32.1 2.5e-18 66.4 21.3 3.2 1 1 2 3 3 3 2 Right handed beta helix region PKD PF00801.20 gi|116753639|ref|YP_842757.1| - 0.06 13.2 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 PKD domain MFS_1 PF07690.16 gi|116753640|ref|YP_842758.1| - 5.3e-65 219.6 77.0 3.5e-52 177.5 51.6 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|116753640|ref|YP_842758.1| - 3.8e-08 32.6 19.3 3.8e-08 32.6 19.3 3.3 2 2 0 3 3 3 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|116753640|ref|YP_842758.1| - 3.9e-05 22.7 24.6 0.00057 18.8 10.6 2.8 2 1 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|116753640|ref|YP_842758.1| - 9.4e-05 21.0 23.3 0.00018 20.1 12.0 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 gi|116753640|ref|YP_842758.1| - 8.6 4.5 21.7 0.55 8.4 1.4 3.2 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Peptidase_M20 PF01546.28 gi|116753641|ref|YP_842759.1| - 1.8e-36 125.8 0.0 2.4e-36 125.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|116753641|ref|YP_842759.1| - 1.6e-19 69.8 0.0 4.1e-19 68.5 0.0 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|116753641|ref|YP_842759.1| - 8.7e-05 22.3 0.0 0.00013 21.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 HetR_C PF18460.1 gi|116753641|ref|YP_842759.1| - 0.035 14.0 0.0 0.11 12.5 0.0 1.8 1 0 0 1 1 1 0 Heterocyst differentiation regulator C-terminal Hood domain MobB PF03205.14 gi|116753642|ref|YP_842760.1| - 2.3e-19 69.6 0.5 2.9e-19 69.3 0.5 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B GTP_EFTU PF00009.27 gi|116753642|ref|YP_842760.1| - 0.0013 18.3 0.7 0.0019 17.8 0.7 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|116753642|ref|YP_842760.1| - 0.0013 18.7 0.1 0.0014 18.7 0.1 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|116753642|ref|YP_842760.1| - 0.0035 17.4 0.1 0.0051 16.9 0.1 1.2 1 0 0 1 1 1 1 Dynamin family AAA_16 PF13191.6 gi|116753642|ref|YP_842760.1| - 0.0064 16.9 0.1 0.0078 16.6 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|116753642|ref|YP_842760.1| - 0.0069 16.9 0.0 0.008 16.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|116753642|ref|YP_842760.1| - 0.0096 16.4 0.1 0.014 16.0 0.1 1.3 1 0 0 1 1 1 1 ABC transporter cobW PF02492.19 gi|116753642|ref|YP_842760.1| - 0.012 15.2 0.1 0.014 15.0 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF463 PF04317.12 gi|116753642|ref|YP_842760.1| - 0.013 14.5 0.1 0.017 14.1 0.1 1.1 1 0 0 1 1 1 0 YcjX-like family, DUF463 AAA_33 PF13671.6 gi|116753642|ref|YP_842760.1| - 0.019 15.1 0.3 0.027 14.7 0.3 1.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|116753642|ref|YP_842760.1| - 0.047 13.7 0.1 0.073 13.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain Glyco_hydro_3 PF00933.21 gi|116753642|ref|YP_842760.1| - 0.071 12.5 2.6 0.1 11.9 2.6 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 N terminal domain AAA_29 PF13555.6 gi|116753642|ref|YP_842760.1| - 0.088 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|116753642|ref|YP_842760.1| - 0.088 13.1 0.1 0.15 12.3 0.1 1.4 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|116753642|ref|YP_842760.1| - 0.097 12.4 0.1 0.19 11.4 0.0 1.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|116753642|ref|YP_842760.1| - 0.11 12.7 0.1 0.19 11.9 0.1 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Thymidylate_kin PF02223.17 gi|116753642|ref|YP_842760.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Thymidylate kinase Peripla_BP_6 PF13458.6 gi|116753642|ref|YP_842760.1| - 0.13 11.9 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein UPF0016 PF01169.19 gi|116753643|ref|YP_842761.1| - 6e-39 132.2 18.5 4.3e-21 75.0 5.7 2.1 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 TauE PF01925.19 gi|116753643|ref|YP_842761.1| - 0.00079 19.1 15.1 0.012 15.3 0.8 2.6 2 1 1 3 3 3 2 Sulfite exporter TauE/SafE Cation_efflux PF01545.21 gi|116753644|ref|YP_842762.1| - 3.8e-46 157.4 16.9 5e-46 156.9 16.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|116753644|ref|YP_842762.1| - 0.031 14.4 0.7 0.056 13.6 0.7 1.4 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter GerPE PF10970.8 gi|116753644|ref|YP_842762.1| - 0.034 14.3 0.1 0.054 13.7 0.1 1.3 1 0 0 1 1 1 0 Spore germination protein GerPE Ubiquitin_2 PF14560.6 gi|116753644|ref|YP_842762.1| - 0.04 14.4 0.0 0.11 13.0 0.0 1.7 2 0 0 2 2 2 0 Ubiquitin-like domain DUF3165 PF11364.8 gi|116753644|ref|YP_842762.1| - 8 6.9 7.5 2.9 8.3 0.9 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3165) Ribosomal_L7Ae PF01248.26 gi|116753647|ref|YP_842765.1| - 3.7e-25 87.5 0.2 4.3e-25 87.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|116753647|ref|YP_842765.1| - 3.6e-05 23.6 0.0 5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain Ribosomal_S28e PF01200.18 gi|116753648|ref|YP_842766.1| - 3.2e-31 107.1 1.2 3.5e-31 107.0 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|116753649|ref|YP_842767.1| - 5.8e-19 68.1 2.9 6.4e-19 68.0 2.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|116753649|ref|YP_842767.1| - 2.5e-05 24.1 2.3 3.3e-05 23.7 2.3 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|116753649|ref|YP_842767.1| - 3.3e-05 23.9 1.2 4.5e-05 23.4 1.2 1.2 1 0 0 1 1 1 1 YHS domain SerH PF06873.11 gi|116753649|ref|YP_842767.1| - 0.0024 16.7 0.0 0.0024 16.7 0.0 1.0 1 0 0 1 1 1 1 Cell surface immobilisation antigen SerH zf-FLZ PF04570.14 gi|116753649|ref|YP_842767.1| - 0.2 11.2 3.7 0.62 9.6 3.7 1.7 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 VATC PF18716.1 gi|116753649|ref|YP_842767.1| - 0.24 11.3 5.7 0.66 9.9 5.7 1.6 1 1 0 1 1 1 0 Vms1-associating treble clef domain NDK PF00334.19 gi|116753650|ref|YP_842768.1| - 3.1e-56 189.1 0.0 3.5e-56 189.0 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase ACT_5 PF13710.6 gi|116753650|ref|YP_842768.1| - 0.16 11.9 0.4 0.37 10.7 0.2 1.7 2 0 0 2 2 2 0 ACT domain DUF99 PF01949.16 gi|116753651|ref|YP_842769.1| - 4.2e-66 221.9 0.1 4.9e-66 221.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 HMGL-like PF00682.19 gi|116753652|ref|YP_842770.1| - 4.9e-22 78.7 0.0 6.6e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 HMGL-like HMGL-like PF00682.19 gi|116753653|ref|YP_842771.1| - 0.0065 16.1 0.0 0.0075 15.9 0.0 1.0 1 0 0 1 1 1 1 HMGL-like Metallophos_2 PF12850.7 gi|116753655|ref|YP_842773.1| - 2.7e-15 56.9 0.0 5.5e-15 55.9 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|116753655|ref|YP_842773.1| - 1.7e-14 53.8 0.0 6.7e-14 51.8 0.0 1.8 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|116753655|ref|YP_842773.1| - 2.1e-13 51.3 0.1 3.2e-13 50.6 0.1 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase CBS PF00571.28 gi|116753656|ref|YP_842774.1| - 9.6e-25 86.8 0.8 2.8e-16 59.7 0.3 2.0 2 0 0 2 2 2 2 CBS domain Metallophos_2 PF12850.7 gi|116753657|ref|YP_842775.1| - 7.8e-13 48.9 0.0 1.5e-10 41.5 0.0 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|116753657|ref|YP_842775.1| - 6.1e-08 33.4 0.1 1.3e-07 32.4 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Peripla_BP_2 PF01497.18 gi|116753658|ref|YP_842776.1| - 4e-23 82.2 0.0 5.1e-23 81.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DDE_Tnp_1_5 PF13737.6 gi|116753659|ref|YP_842777.1| - 8.2e-33 113.1 0.0 3.2e-31 107.9 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|116753659|ref|YP_842777.1| - 9e-21 74.5 0.1 1.6e-20 73.7 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain Peripla_BP_2 PF01497.18 gi|116753660|ref|YP_842778.1| - 0.2 11.2 0.0 0.27 10.8 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein His_biosynth PF00977.21 gi|116753662|ref|YP_842780.1| - 7.5e-28 97.5 0.1 8.9e-28 97.3 0.1 1.1 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|116753662|ref|YP_842780.1| - 2.6e-05 23.6 0.3 4e-05 23.0 0.3 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG 4HFCP_synth PF04476.13 gi|116753663|ref|YP_842781.1| - 1.2e-88 296.7 0.0 1.4e-88 296.5 0.0 1.0 1 0 0 1 1 1 1 4-HFC-P synthase QRPTase_C PF01729.19 gi|116753663|ref|YP_842781.1| - 0.0054 16.5 0.0 0.14 12.0 0.0 2.3 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain DUF3747 PF12565.8 gi|116753664|ref|YP_842782.1| - 0.15 11.4 0.0 0.34 10.2 0.0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3747) Radical_SAM PF04055.21 gi|116753665|ref|YP_842783.1| - 3.5e-14 53.5 0.0 4.7e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|116753665|ref|YP_842783.1| - 3.1e-10 40.4 1.0 8.9e-10 39.0 0.4 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|116753665|ref|YP_842783.1| - 0.00017 21.8 0.0 0.00031 21.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|116753665|ref|YP_842783.1| - 0.026 14.6 0.0 0.043 13.9 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain polyprenyl_synt PF00348.17 gi|116753666|ref|YP_842784.1| - 1.1e-47 162.3 0.0 1.4e-47 161.9 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase TspO_MBR PF03073.15 gi|116753667|ref|YP_842785.1| - 7.3e-45 152.3 17.2 8.4e-45 152.1 17.2 1.0 1 0 0 1 1 1 1 TspO/MBR family DUF805 PF05656.14 gi|116753667|ref|YP_842785.1| - 1.9 8.9 14.9 51 4.3 14.9 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF4157 PF13699.6 gi|116753668|ref|YP_842786.1| - 0.14 12.4 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) GCHY-1 PF02649.14 gi|116753670|ref|YP_842788.1| - 3.5e-83 279.1 0.8 4e-83 278.9 0.8 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 Dot_icm_IcmQ PF09475.10 gi|116753670|ref|YP_842788.1| - 0.03 13.8 0.3 0.081 12.4 0.0 1.8 2 0 0 2 2 2 0 Dot/Icm secretion system protein (dot_icm_IcmQ) UPF0184 PF03670.13 gi|116753671|ref|YP_842789.1| - 0.69 10.3 5.9 2.5 8.5 1.4 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) ArsP_1 PF03773.13 gi|116753672|ref|YP_842790.1| - 3.9e-54 183.8 23.9 4.4e-54 183.6 23.9 1.0 1 0 0 1 1 1 1 Predicted permease ABC_membrane PF00664.23 gi|116753672|ref|YP_842790.1| - 5.6 6.5 12.8 0.18 11.4 4.6 2.5 2 0 0 2 2 2 0 ABC transporter transmembrane region eRF1_2 PF03464.15 gi|116753674|ref|YP_842792.1| - 1.1e-44 152.0 0.0 2e-44 151.1 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|116753674|ref|YP_842792.1| - 1.8e-31 109.0 0.0 5.7e-31 107.3 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|116753674|ref|YP_842792.1| - 2e-14 53.7 0.0 5.7e-14 52.2 0.0 1.8 3 0 0 3 3 3 1 eRF1 domain 1 baeRF_family10 PF18854.1 gi|116753674|ref|YP_842792.1| - 3.9e-14 53.1 0.0 7.1e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 gi|116753674|ref|YP_842792.1| - 2.5e-11 44.0 0.0 6.7e-11 42.6 0.0 1.7 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor DNA_ligase_ZBD PF03119.16 gi|116753674|ref|YP_842792.1| - 0.00072 19.5 0.9 0.11 12.5 0.1 2.6 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|116753674|ref|YP_842792.1| - 0.028 14.5 3.2 0.13 12.4 1.3 2.4 2 0 0 2 2 2 0 Zinc ribbon domain baeRF_family12 PF18856.1 gi|116753674|ref|YP_842792.1| - 0.078 13.6 0.0 0.18 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 12 Rad50_zn_hook PF04423.14 gi|116753674|ref|YP_842792.1| - 0.086 12.7 1.5 0.52 10.2 0.0 3.0 4 0 0 4 4 4 0 Rad50 zinc hook motif DUF1936 PF09151.10 gi|116753674|ref|YP_842792.1| - 1.6 8.7 6.7 2.2 8.3 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) RNA_binding PF01877.17 gi|116753675|ref|YP_842793.1| - 2.6e-08 34.2 0.0 7.5e-07 29.4 0.0 2.0 1 1 0 1 1 1 1 RNA binding AP_endonuc_2 PF01261.24 gi|116753676|ref|YP_842794.1| - 2.5e-32 112.1 0.2 2.9e-32 111.8 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Translin PF01997.16 gi|116753677|ref|YP_842795.1| - 7.5e-12 45.7 1.2 2.8e-10 40.5 1.2 2.1 1 1 0 1 1 1 1 Translin family HEPN PF05168.14 gi|116753677|ref|YP_842795.1| - 0.074 13.2 2.3 3.5 7.8 0.9 2.5 3 0 0 3 3 3 0 HEPN domain tRNA-synt_2d PF01409.20 gi|116753678|ref|YP_842796.1| - 3.1e-53 180.8 0.0 5.3e-49 166.9 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|116753678|ref|YP_842796.1| - 5.8e-15 55.1 0.2 1.1e-14 54.2 0.2 1.5 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|116753678|ref|YP_842796.1| - 4.6e-10 39.3 0.0 2.2e-06 27.3 0.0 2.4 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|116753678|ref|YP_842796.1| - 0.15 11.1 0.0 19 4.2 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.25 gi|116753678|ref|YP_842796.1| - 0.16 11.9 0.0 0.48 10.4 0.0 1.8 1 1 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) Rib_5-P_isom_A PF06026.14 gi|116753679|ref|YP_842797.1| - 8.4e-61 204.6 0.1 9.7e-61 204.3 0.1 1.0 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IF-2B PF01008.17 gi|116753680|ref|YP_842798.1| - 2.7e-80 269.6 0.0 3.7e-80 269.2 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family SUI1 PF01253.22 gi|116753681|ref|YP_842799.1| - 4.9e-22 78.3 0.7 7e-22 77.7 0.7 1.2 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|116753681|ref|YP_842799.1| - 0.0062 16.8 0.3 0.01 16.1 0.3 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|116753681|ref|YP_842799.1| - 0.0068 16.1 1.1 0.0085 15.8 1.1 1.1 1 0 0 1 1 1 1 DTW domain SSF PF00474.17 gi|116753682|ref|YP_842800.1| - 2.2e-26 92.7 33.6 1.1e-24 87.0 33.6 2.6 1 1 0 1 1 1 1 Sodium:solute symporter family tRNA-synt_1b PF00579.25 gi|116753683|ref|YP_842801.1| - 5.9e-40 137.4 0.0 2.3e-22 79.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) DUF2383 PF09537.10 gi|116753683|ref|YP_842801.1| - 0.068 13.5 0.1 0.21 11.9 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) YbjQ_1 PF01906.17 gi|116753683|ref|YP_842801.1| - 0.3 11.7 1.8 0.5 11.0 0.1 2.2 3 0 0 3 3 3 0 Putative heavy-metal-binding SRP54 PF00448.22 gi|116753684|ref|YP_842802.1| - 4.5e-70 235.3 3.7 7.4e-70 234.6 3.7 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|116753684|ref|YP_842802.1| - 8.1e-30 103.4 2.2 1.7e-29 102.4 1.4 2.0 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|116753684|ref|YP_842802.1| - 3.1e-21 75.4 1.8 1.3e-20 73.4 0.1 2.8 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|116753684|ref|YP_842802.1| - 1.5e-07 31.5 0.0 1.1e-06 28.7 0.0 2.6 2 1 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|116753684|ref|YP_842802.1| - 1.1e-05 25.1 1.6 0.00019 21.1 1.6 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.20 gi|116753684|ref|YP_842802.1| - 0.00011 22.2 0.1 0.00051 20.0 0.1 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase 6PF2K PF01591.18 gi|116753684|ref|YP_842802.1| - 0.00044 19.6 0.3 0.0014 18.0 0.0 1.9 2 0 0 2 2 2 1 6-phosphofructo-2-kinase Zeta_toxin PF06414.12 gi|116753684|ref|YP_842802.1| - 0.00049 19.4 0.0 0.001 18.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|116753684|ref|YP_842802.1| - 0.00052 20.4 0.0 0.0011 19.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain MeaB PF03308.16 gi|116753684|ref|YP_842802.1| - 0.00062 18.8 0.2 0.0021 17.1 0.2 1.9 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|116753684|ref|YP_842802.1| - 0.0012 19.0 0.9 0.014 15.5 0.9 2.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase MobB PF03205.14 gi|116753684|ref|YP_842802.1| - 0.0013 18.7 0.0 0.0035 17.2 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRPRB PF09439.10 gi|116753684|ref|YP_842802.1| - 0.0013 18.2 0.2 0.46 9.9 0.0 2.4 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_33 PF13671.6 gi|116753684|ref|YP_842802.1| - 0.0027 17.9 0.0 0.006 16.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_8 PF12780.7 gi|116753684|ref|YP_842802.1| - 0.0035 16.7 0.1 0.48 9.7 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region D4 AAA_18 PF13238.6 gi|116753684|ref|YP_842802.1| - 0.004 17.7 0.0 0.012 16.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.9 gi|116753684|ref|YP_842802.1| - 0.012 14.5 0.1 0.022 13.7 0.1 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KTI12 PF08433.10 gi|116753684|ref|YP_842802.1| - 0.013 15.0 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Thymidylate_kin PF02223.17 gi|116753684|ref|YP_842802.1| - 0.014 15.0 0.1 0.064 12.9 0.1 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_24 PF13479.6 gi|116753684|ref|YP_842802.1| - 0.017 14.9 0.0 0.037 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|116753684|ref|YP_842802.1| - 0.02 15.2 0.0 0.049 13.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|116753684|ref|YP_842802.1| - 0.028 14.2 2.0 0.036 13.8 0.6 2.0 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|116753684|ref|YP_842802.1| - 0.033 14.1 0.1 0.1 12.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain MipZ PF09140.11 gi|116753684|ref|YP_842802.1| - 0.044 13.1 0.3 1.3 8.2 0.3 2.3 1 1 0 1 1 1 0 ATPase MipZ AAA_28 PF13521.6 gi|116753684|ref|YP_842802.1| - 0.053 13.8 0.8 0.16 12.2 0.5 2.1 1 1 1 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|116753684|ref|YP_842802.1| - 0.057 13.3 0.3 0.43 10.5 0.1 2.2 2 0 0 2 2 2 0 NTPase ResIII PF04851.15 gi|116753684|ref|YP_842802.1| - 0.059 13.4 0.0 0.092 12.7 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|116753684|ref|YP_842802.1| - 0.068 13.1 0.1 0.15 12.0 0.1 1.6 1 0 0 1 1 1 0 NACHT domain ArsA_ATPase PF02374.15 gi|116753684|ref|YP_842802.1| - 0.077 12.2 5.1 1.1 8.4 0.1 2.9 3 0 0 3 3 3 0 Anion-transporting ATPase AAA PF00004.29 gi|116753684|ref|YP_842802.1| - 0.078 13.4 0.4 0.35 11.3 0.4 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|116753684|ref|YP_842802.1| - 0.12 12.4 0.0 0.35 10.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.9 gi|116753684|ref|YP_842802.1| - 0.18 11.6 1.2 3.1 7.5 0.2 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.6 gi|116753684|ref|YP_842802.1| - 0.25 11.8 0.8 0.7 10.4 0.8 1.9 1 1 0 1 1 1 0 AAA domain DUF2627 PF11118.8 gi|116753685|ref|YP_842803.1| - 0.098 13.2 0.6 0.13 12.9 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2627) DUF872 PF05915.12 gi|116753685|ref|YP_842803.1| - 0.12 12.6 1.7 6.2 7.0 0.3 2.0 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF3098 PF11297.8 gi|116753685|ref|YP_842803.1| - 0.24 11.0 6.9 0.94 9.1 6.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3098) Alanine_zipper PF11839.8 gi|116753686|ref|YP_842804.1| - 1.1e-06 28.9 19.9 0.033 14.5 1.7 3.3 3 0 0 3 3 3 3 Alanine-zipper, major outer membrane lipoprotein DUF3175 PF11373.8 gi|116753686|ref|YP_842804.1| - 1.5e-06 28.3 7.3 0.4 10.9 0.3 3.3 3 0 0 3 3 3 3 Protein of unknown function (DUF3175) DUF3907 PF13047.6 gi|116753686|ref|YP_842804.1| - 7.9e-05 22.7 8.5 0.4 10.6 0.4 3.1 1 1 2 3 3 3 3 Protein of unknown function (DUF3907) TTKRSYEDQ PF10212.9 gi|116753686|ref|YP_842804.1| - 0.00034 19.7 5.0 1.5 7.7 0.1 3.1 1 1 2 3 3 3 3 Predicted coiled-coil domain-containing protein DUF5498 PF17602.2 gi|116753686|ref|YP_842804.1| - 0.00047 20.6 0.0 15 6.1 0.0 3.2 1 1 1 3 3 3 2 Family of unknown function (DUF5498) CiPC PF15800.5 gi|116753686|ref|YP_842804.1| - 0.062 13.0 2.6 0.083 12.6 2.6 1.1 1 0 0 1 1 1 0 Clock interacting protein circadian AI-2E_transport PF01594.16 gi|116753687|ref|YP_842805.1| - 4.8e-42 144.3 30.2 6.5e-42 143.8 30.2 1.2 1 0 0 1 1 1 1 AI-2E family transporter Radical_SAM PF04055.21 gi|116753688|ref|YP_842806.1| - 7e-21 75.3 0.0 1.9e-20 73.9 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|116753688|ref|YP_842806.1| - 1.1e-13 51.0 0.1 2.3e-13 50.0 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|116753688|ref|YP_842806.1| - 3.9e-11 42.8 0.0 7.7e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 TRAM domain SeqA PF03925.13 gi|116753688|ref|YP_842806.1| - 0.12 12.3 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 SeqA protein C-terminal domain DASH_Dad4 PF08650.10 gi|116753689|ref|YP_842807.1| - 0.019 14.9 0.0 0.093 12.7 0.0 2.1 2 0 0 2 2 2 0 DASH complex subunit Dad4 MbeD_MobD PF04899.12 gi|116753689|ref|YP_842807.1| - 0.023 14.8 0.2 0.058 13.5 0.2 1.7 1 1 0 1 1 1 0 MbeD/MobD like HTH_24 PF13412.6 gi|116753689|ref|YP_842807.1| - 0.033 13.8 0.0 0.075 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|116753689|ref|YP_842807.1| - 0.033 14.0 0.0 0.073 12.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Hydrolase PF00702.26 gi|116753690|ref|YP_842808.1| - 9.4e-15 55.5 0.0 2e-13 51.1 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|116753690|ref|YP_842808.1| - 0.00019 21.3 0.0 0.0071 16.1 0.0 2.4 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|116753690|ref|YP_842808.1| - 0.00057 20.0 0.0 0.01 16.0 0.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|116753690|ref|YP_842808.1| - 0.0067 16.5 0.0 0.042 13.9 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase SRPRB PF09439.10 gi|116753690|ref|YP_842808.1| - 0.032 13.7 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF2399 PF09664.10 gi|116753690|ref|YP_842808.1| - 0.094 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Lactamase_B_3 PF13483.6 gi|116753691|ref|YP_842809.1| - 0.00084 19.3 0.0 0.0014 18.5 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|116753691|ref|YP_842809.1| - 0.0015 18.1 0.2 0.0027 17.3 0.2 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|116753691|ref|YP_842809.1| - 0.66 9.9 6.7 7.6 6.5 6.9 2.2 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily ABC_tran PF00005.27 gi|116753692|ref|YP_842810.1| - 8.9e-28 97.5 0.0 2.2e-27 96.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|116753692|ref|YP_842810.1| - 2.9e-14 53.6 0.9 1.8e-07 31.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|116753692|ref|YP_842810.1| - 5.2e-06 27.1 0.1 7.6e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain DUF4162 PF13732.6 gi|116753692|ref|YP_842810.1| - 3.8e-05 24.3 0.0 6.3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|116753692|ref|YP_842810.1| - 8.5e-05 22.4 0.1 0.39 10.4 0.3 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|116753692|ref|YP_842810.1| - 0.00048 19.8 0.1 0.00094 18.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|116753692|ref|YP_842810.1| - 0.00055 19.4 0.0 0.5 9.8 0.0 2.8 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_14 PF13173.6 gi|116753692|ref|YP_842810.1| - 0.029 14.4 0.0 1.8 8.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|116753692|ref|YP_842810.1| - 0.049 12.7 0.0 0.078 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DEAD PF00270.29 gi|116753692|ref|YP_842810.1| - 0.077 12.8 0.0 0.15 11.9 0.0 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_5 PF07728.14 gi|116753692|ref|YP_842810.1| - 0.13 12.3 0.0 0.46 10.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|116753692|ref|YP_842810.1| - 0.16 11.7 0.0 0.37 10.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|116753693|ref|YP_842811.1| - 4.8e-11 42.5 24.5 4.8e-11 42.5 24.5 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ADC PF06314.11 gi|116753693|ref|YP_842811.1| - 0.21 11.1 0.2 0.3 10.6 0.2 1.2 1 0 0 1 1 1 0 Acetoacetate decarboxylase (ADC) E1-E2_ATPase PF00122.20 gi|116753694|ref|YP_842812.1| - 4.9e-52 176.1 0.4 4.9e-52 176.1 0.4 3.6 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|116753694|ref|YP_842812.1| - 3.7e-40 137.6 2.8 3.7e-40 137.6 2.8 2.4 4 0 0 4 4 4 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|116753694|ref|YP_842812.1| - 4.8e-22 79.3 0.6 7.2e-21 75.4 0.6 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|116753694|ref|YP_842812.1| - 2.2e-20 72.1 0.2 1.8e-18 66.0 0.0 2.6 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|116753694|ref|YP_842812.1| - 1.2e-18 66.9 0.0 2.7e-18 65.8 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) HAD PF12710.7 gi|116753694|ref|YP_842812.1| - 7.9e-05 23.1 0.1 0.00016 22.1 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|116753694|ref|YP_842812.1| - 0.00082 19.2 1.2 0.0058 16.4 0.8 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Peptidase_A3 PF02160.15 gi|116753694|ref|YP_842812.1| - 0.049 13.1 0.0 3 7.3 0.0 2.2 2 0 0 2 2 2 0 Cauliflower mosaic virus peptidase (A3) DeoC PF01791.9 gi|116753695|ref|YP_842813.1| - 1.4e-48 165.6 0.0 1.7e-48 165.3 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase RAP1 PF07218.11 gi|116753697|ref|YP_842815.1| - 0.41 8.9 1.3 0.55 8.5 1.3 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) Cyclase PF04199.13 gi|116753698|ref|YP_842816.1| - 1.5e-16 60.9 0.0 2.4e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 Putative cyclase PAS_9 PF13426.7 gi|116753699|ref|YP_842817.1| - 9.1e-59 196.2 0.0 8.4e-22 77.4 0.0 7.2 6 2 0 6 6 6 5 PAS domain PAS PF00989.25 gi|116753699|ref|YP_842817.1| - 1.3e-52 176.5 0.5 2.4e-11 43.6 0.0 7.6 7 1 0 7 7 7 5 PAS fold PAS_4 PF08448.10 gi|116753699|ref|YP_842817.1| - 9.1e-49 164.3 0.3 1e-13 51.5 0.0 7.8 6 2 0 6 6 6 4 PAS fold PAS_8 PF13188.7 gi|116753699|ref|YP_842817.1| - 1.9e-34 117.1 0.2 9.5e-06 25.5 0.0 6.8 6 0 0 6 6 6 5 PAS domain HATPase_c PF02518.26 gi|116753699|ref|YP_842817.1| - 2.5e-31 108.5 0.0 5.5e-31 107.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|116753699|ref|YP_842817.1| - 1.7e-27 95.8 0.1 5.6e-27 94.1 0.1 2.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|116753699|ref|YP_842817.1| - 3.4e-25 88.1 1.7 4.8e-10 39.6 0.1 6.8 6 1 0 6 6 6 4 PAS fold HisKA PF00512.25 gi|116753699|ref|YP_842817.1| - 3.1e-18 65.6 0.2 3.1e-18 65.6 0.2 3.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain Hpt PF01627.23 gi|116753699|ref|YP_842817.1| - 8.8e-13 48.3 0.5 3.9e-12 46.3 0.5 2.3 1 0 0 1 1 1 1 Hpt domain GAF PF01590.26 gi|116753699|ref|YP_842817.1| - 5.5e-12 46.5 0.0 1.8e-05 25.4 0.0 3.4 2 0 0 2 2 2 2 GAF domain PAS_7 PF12860.7 gi|116753699|ref|YP_842817.1| - 2.3e-08 34.2 0.2 0.11 12.7 0.0 5.6 4 2 0 4 4 4 2 PAS fold GAF_2 PF13185.6 gi|116753699|ref|YP_842817.1| - 3e-08 34.0 0.5 0.01 16.2 0.0 4.2 4 1 0 4 4 3 2 GAF domain PAS_12 PF18095.1 gi|116753699|ref|YP_842817.1| - 0.00036 20.2 0.0 1.4 8.5 0.0 3.1 3 0 0 3 3 3 2 UPF0242 C-terminal PAS-like domain PAS_10 PF13596.6 gi|116753699|ref|YP_842817.1| - 0.00052 20.6 0.2 5 7.8 0.0 4.6 4 0 0 4 4 4 1 PAS domain MLTR_LBD PF17765.1 gi|116753699|ref|YP_842817.1| - 0.02 15.0 0.0 0.6 10.2 0.0 2.7 2 0 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain PAS_6 PF08348.11 gi|116753699|ref|YP_842817.1| - 0.02 14.7 0.0 0.23 11.3 0.0 2.6 2 0 0 2 2 2 0 YheO-like PAS domain Sugar-bind PF04198.13 gi|116753699|ref|YP_842817.1| - 0.061 12.5 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain PARP_regulatory PF01358.18 gi|116753699|ref|YP_842817.1| - 0.17 10.8 0.0 0.33 9.8 0.0 1.4 1 0 0 1 1 1 0 Poly A polymerase regulatory subunit GATase_3 PF07685.14 gi|116753700|ref|YP_842818.1| - 5.3e-50 169.8 0.1 1.4e-49 168.4 0.0 1.7 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|116753700|ref|YP_842818.1| - 3.7e-21 75.8 0.0 1.7e-20 73.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|116753700|ref|YP_842818.1| - 1.3e-19 70.5 0.0 3.2e-19 69.3 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SNO PF01174.19 gi|116753700|ref|YP_842818.1| - 0.00026 20.9 0.0 0.00047 20.1 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family MobB PF03205.14 gi|116753700|ref|YP_842818.1| - 0.00037 20.4 0.2 0.0093 15.9 0.0 2.6 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B GATase PF00117.28 gi|116753700|ref|YP_842818.1| - 0.00071 19.4 0.2 0.0017 18.1 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|116753700|ref|YP_842818.1| - 0.085 12.6 0.1 0.76 9.6 0.0 2.1 2 0 0 2 2 2 0 DJ-1/PfpI family MoeA_N PF03453.17 gi|116753701|ref|YP_842819.1| - 1.8e-38 131.8 0.0 2.7e-38 131.2 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|116753701|ref|YP_842819.1| - 1.8e-24 86.1 0.0 3e-24 85.3 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|116753701|ref|YP_842819.1| - 1e-16 60.8 0.5 3.5e-15 55.9 0.1 3.1 3 1 0 3 3 3 1 MoeA C-terminal region (domain IV) TraD_N PF12615.8 gi|116753702|ref|YP_842820.1| - 0.0013 19.5 10.1 0.26 12.1 0.4 3.1 1 1 2 3 3 3 3 F sex factor protein N terminal DUF4277 PF14104.6 gi|116753702|ref|YP_842820.1| - 0.0044 17.3 2.4 23 5.4 0.1 3.5 1 1 1 3 3 3 3 Domain of unknown function (DUF4277) BamHI PF02923.15 gi|116753703|ref|YP_842821.1| - 0.05 13.3 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease BamHI HTH_34 PF13601.6 gi|116753703|ref|YP_842821.1| - 0.088 13.0 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF87 PF01935.17 gi|116753704|ref|YP_842822.1| - 6.2e-37 127.9 0.0 9.5e-37 127.3 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|116753704|ref|YP_842822.1| - 3.3e-08 33.6 0.4 7e-08 32.5 0.1 1.8 2 0 0 2 2 2 1 HAS barrel domain DUF853 PF05872.12 gi|116753704|ref|YP_842822.1| - 3.9e-07 29.0 0.0 0.013 14.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|116753704|ref|YP_842822.1| - 6.4e-05 22.0 0.0 0.00074 18.5 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain TrwB_AAD_bind PF10412.9 gi|116753704|ref|YP_842822.1| - 6.7e-05 22.0 0.0 0.019 13.9 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|116753704|ref|YP_842822.1| - 0.035 14.1 0.0 0.093 12.7 0.0 1.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Zot PF05707.12 gi|116753704|ref|YP_842822.1| - 0.038 13.6 0.0 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) T4SS-DNA_transf PF02534.14 gi|116753704|ref|YP_842822.1| - 0.051 12.4 0.0 0.14 10.9 0.0 1.7 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer AAA_22 PF13401.6 gi|116753704|ref|YP_842822.1| - 0.084 13.1 0.1 19 5.5 0.0 3.0 2 1 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|116753704|ref|YP_842822.1| - 0.11 12.2 0.0 5.8 6.6 0.0 2.5 2 1 0 2 2 2 0 DEAD/DEAH box helicase Acetyltransf_1 PF00583.25 gi|116753707|ref|YP_842825.1| - 1.3e-15 57.6 0.0 1.7e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|116753707|ref|YP_842825.1| - 5.7e-13 49.1 0.0 8.1e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|116753707|ref|YP_842825.1| - 7.5e-12 45.3 0.0 9e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|116753707|ref|YP_842825.1| - 1.1e-05 25.3 0.0 1.5e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|116753707|ref|YP_842825.1| - 5.4e-05 23.9 0.1 0.00021 22.0 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|116753707|ref|YP_842825.1| - 0.0018 18.4 0.0 0.0022 18.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|116753707|ref|YP_842825.1| - 0.0063 16.2 0.0 0.015 15.0 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|116753707|ref|YP_842825.1| - 0.12 12.5 0.0 2 8.5 0.0 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain LTD PF00932.19 gi|116753708|ref|YP_842826.1| - 1.7e-14 54.1 0.0 2.4e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Lamin Tail Domain Radical_SAM PF04055.21 gi|116753709|ref|YP_842827.1| - 8.6e-14 52.3 1.1 9.3e-13 48.9 0.2 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Aldedh PF00171.22 gi|116753710|ref|YP_842828.1| - 1.8e-171 570.8 0.0 2e-171 570.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|116753710|ref|YP_842828.1| - 0.0011 18.4 0.1 0.0097 15.4 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF1487) TrkA_N PF02254.18 gi|116753711|ref|YP_842829.1| - 6e-42 142.6 2.2 4e-23 81.9 0.3 2.3 2 0 0 2 2 2 2 TrkA-N domain Ion_trans_2 PF07885.16 gi|116753711|ref|YP_842829.1| - 2.8e-14 52.8 9.8 2.8e-14 52.8 9.8 2.2 2 0 0 2 2 2 1 Ion channel TrkA_C PF02080.21 gi|116753711|ref|YP_842829.1| - 1.6e-08 34.3 0.0 5.3e-08 32.6 0.0 1.9 1 0 0 1 1 1 1 TrkA-C domain XdhC_C PF13478.6 gi|116753711|ref|YP_842829.1| - 1.3e-06 28.9 0.3 0.0045 17.5 0.1 2.3 2 0 0 2 2 2 2 XdhC Rossmann domain NAD_binding_2 PF03446.15 gi|116753711|ref|YP_842829.1| - 6.1e-06 26.5 0.2 0.00061 20.0 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|116753711|ref|YP_842829.1| - 0.00012 22.5 0.4 0.0027 18.1 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|116753711|ref|YP_842829.1| - 0.0011 19.1 0.0 0.12 12.4 0.0 2.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|116753711|ref|YP_842829.1| - 0.0016 18.0 0.0 0.035 13.7 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Ion_trans PF00520.31 gi|116753711|ref|YP_842829.1| - 0.0074 15.5 5.5 0.013 14.8 5.5 1.2 1 0 0 1 1 1 1 Ion transport protein 2-Hacid_dh_C PF02826.19 gi|116753711|ref|YP_842829.1| - 0.0079 15.6 0.0 0.17 11.3 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|116753711|ref|YP_842829.1| - 0.021 14.1 0.0 0.094 11.9 0.0 1.9 2 0 0 2 2 2 0 FAD binding domain F420_oxidored PF03807.17 gi|116753711|ref|YP_842829.1| - 0.024 15.2 0.0 13 6.5 0.0 2.9 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent DUF5090 PF17009.5 gi|116753711|ref|YP_842829.1| - 0.54 10.2 2.2 0.89 9.5 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5090) TrkA_C PF02080.21 gi|116753712|ref|YP_842830.1| - 2.4e-15 56.1 0.1 3.3e-15 55.7 0.1 1.2 1 0 0 1 1 1 1 TrkA-C domain TruD PF01142.18 gi|116753713|ref|YP_842831.1| - 2e-165 550.7 0.0 2.2e-165 550.5 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) MFS_1 PF07690.16 gi|116753714|ref|YP_842832.1| - 3e-40 138.3 38.8 3e-40 138.3 38.8 1.8 1 1 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|116753714|ref|YP_842832.1| - 2.3e-11 42.9 29.1 8.7e-07 27.8 10.9 3.1 1 1 1 3 3 3 2 MFS/sugar transport protein Sugar_tr PF00083.24 gi|116753714|ref|YP_842832.1| - 1e-10 41.1 5.6 1e-10 41.1 5.6 2.5 2 1 0 2 2 2 1 Sugar (and other) transporter DUF2499 PF10693.9 gi|116753714|ref|YP_842832.1| - 0.05 13.9 2.9 0.093 13.0 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2499) DUF11 PF01345.18 gi|116753716|ref|YP_842834.1| - 1.2e-19 70.4 1.7 0.00014 22.1 0.0 7.9 5 2 0 5 5 5 4 Domain of unknown function DUF11 CARDB PF07705.11 gi|116753716|ref|YP_842834.1| - 1.7e-08 34.7 8.8 5.4 7.3 0.0 8.2 8 0 0 8 8 8 3 CARDB Lep_receptor_Ig PF06328.11 gi|116753716|ref|YP_842834.1| - 0.00025 20.9 1.1 6.9 6.7 0.0 3.9 4 0 0 4 4 4 3 Ig-like C2-type domain NPCBM_assoc PF10633.9 gi|116753716|ref|YP_842834.1| - 0.0012 19.0 0.7 20 5.5 0.0 6.3 7 1 0 7 7 7 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Arrestin_C PF02752.22 gi|116753716|ref|YP_842834.1| - 0.1 13.0 0.0 72 3.8 0.0 4.3 4 0 0 4 4 4 0 Arrestin (or S-antigen), C-terminal domain TPP_enzyme_C PF02775.21 gi|116753717|ref|YP_842835.1| - 4e-07 29.9 0.1 9.6e-07 28.7 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|116753717|ref|YP_842835.1| - 0.00033 20.3 0.2 0.0018 17.9 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF1743 PF08489.11 gi|116753718|ref|YP_842836.1| - 2.6e-10 40.4 0.0 9e-08 32.2 0.0 3.2 2 1 0 2 2 2 1 Domain of unknown function (DUF1743) MarR_2 PF12802.7 gi|116753719|ref|YP_842837.1| - 4.9e-05 23.1 0.1 0.00021 21.1 0.1 1.9 1 1 1 2 2 2 1 MarR family TrmB PF01978.19 gi|116753719|ref|YP_842837.1| - 0.00024 20.9 0.2 0.003 17.4 0.1 2.3 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB SMC_ScpB PF04079.16 gi|116753719|ref|YP_842837.1| - 0.0061 16.2 0.1 0.0094 15.6 0.1 1.5 1 1 0 1 1 1 1 Segregation and condensation complex subunit ScpB PadR PF03551.14 gi|116753719|ref|YP_842837.1| - 0.013 15.4 0.1 0.023 14.6 0.1 1.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|116753719|ref|YP_842837.1| - 0.034 14.0 0.0 0.17 11.8 0.0 2.1 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family DUF1978 PF09321.10 gi|116753719|ref|YP_842837.1| - 0.045 13.1 2.1 0.087 12.1 1.1 1.7 1 1 0 2 2 2 0 Domain of unknown function (DUF1978) HTH_IclR PF09339.10 gi|116753719|ref|YP_842837.1| - 0.064 13.1 0.0 2.4 8.0 0.0 2.4 1 1 1 2 2 2 0 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|116753719|ref|YP_842837.1| - 0.065 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PBP_like_2 PF12849.7 gi|116753720|ref|YP_842838.1| - 5.9e-38 131.1 0.1 1.7e-37 129.6 0.1 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|116753720|ref|YP_842838.1| - 8.1e-20 70.8 0.0 1.1e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|116753720|ref|YP_842838.1| - 0.0097 15.7 0.0 0.044 13.5 0.0 2.0 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein AP_endonuc_2 PF01261.24 gi|116753721|ref|YP_842839.1| - 2.9e-36 124.9 0.0 3.4e-36 124.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Response_reg PF00072.24 gi|116753722|ref|YP_842840.1| - 1.9e-21 76.4 0.1 2.1e-21 76.1 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain H_lectin PF09458.10 gi|116753722|ref|YP_842840.1| - 0.095 12.9 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 H-type lectin domain Methyltransf_3 PF01596.17 gi|116753722|ref|YP_842840.1| - 0.11 11.7 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Radical_SAM PF04055.21 gi|116753723|ref|YP_842841.1| - 9.8e-23 81.3 0.0 2.7e-22 79.9 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|116753723|ref|YP_842841.1| - 1.1e-21 76.9 0.0 2.2e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation malic PF00390.19 gi|116753724|ref|YP_842842.1| - 9.9e-31 106.9 0.1 3.9e-28 98.5 0.1 2.3 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|116753724|ref|YP_842842.1| - 1.7e-21 76.7 2.1 3e-20 72.6 2.1 2.5 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain ELFV_dehydrog PF00208.21 gi|116753724|ref|YP_842842.1| - 0.0028 17.4 0.0 0.0048 16.7 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ThiF PF00899.21 gi|116753724|ref|YP_842842.1| - 0.014 14.8 1.0 0.026 13.9 1.0 1.4 1 0 0 1 1 1 0 ThiF family Gate PF07670.14 gi|116753725|ref|YP_842843.1| - 0.0083 16.4 24.8 0.029 14.7 3.3 3.2 2 2 1 3 3 3 2 Nucleoside recognition Phage_holin_3_6 PF07332.11 gi|116753725|ref|YP_842843.1| - 0.079 13.0 0.3 0.079 13.0 0.3 3.2 3 0 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III Pribosyltran_N PF13793.6 gi|116753726|ref|YP_842844.1| - 1.5e-24 86.2 0.0 1.5e-19 70.0 0.0 2.4 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|116753726|ref|YP_842844.1| - 2.5e-20 72.6 0.3 4.2e-20 71.9 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|116753726|ref|YP_842844.1| - 3e-07 30.6 1.0 7e-07 29.5 0.4 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|116753726|ref|YP_842844.1| - 1.4e-06 27.9 0.1 2.5e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|116753726|ref|YP_842844.1| - 0.061 12.8 0.1 0.13 11.7 0.1 1.6 1 1 0 1 1 1 0 Phosphoribosyl transferase DUF5396 PF17374.2 gi|116753726|ref|YP_842844.1| - 0.21 9.4 0.0 0.28 9.0 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5396) PmbA_TldD PF01523.16 gi|116753727|ref|YP_842845.1| - 4.3e-52 177.7 0.5 5.7e-52 177.3 0.5 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PAC2 PF09754.9 gi|116753728|ref|YP_842846.1| - 3.4e-53 180.8 0.1 3.9e-53 180.6 0.1 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.12 gi|116753729|ref|YP_842847.1| - 1.4e-22 79.5 2.9 1.5e-22 79.3 2.9 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|116753729|ref|YP_842847.1| - 0.00045 19.7 1.3 0.00057 19.4 1.3 1.2 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|116753729|ref|YP_842847.1| - 0.0075 14.2 0.2 0.0075 14.2 0.2 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 NOB1_Zn_bind PF08772.11 gi|116753729|ref|YP_842847.1| - 0.012 15.7 0.5 0.014 15.5 0.5 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like TackOD1 PF18551.1 gi|116753729|ref|YP_842847.1| - 0.037 13.7 0.8 0.044 13.5 0.8 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 NRDD PF13597.6 gi|116753729|ref|YP_842847.1| - 0.049 12.4 0.4 0.047 12.5 0.4 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.19 gi|116753729|ref|YP_842847.1| - 0.13 12.3 1.1 0.15 12.1 1.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-FPG_IleRS PF06827.14 gi|116753729|ref|YP_842847.1| - 0.3 11.0 8.4 0.44 10.5 1.0 2.3 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf_UBZ PF18439.1 gi|116753729|ref|YP_842847.1| - 0.82 9.3 3.4 2.5 7.8 0.2 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger EIF_2_alpha PF07541.12 gi|116753730|ref|YP_842848.1| - 3.4e-23 81.9 0.7 5.2e-23 81.3 0.2 1.6 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|116753730|ref|YP_842848.1| - 1.8e-10 41.0 0.9 3.7e-10 40.0 0.2 1.8 2 0 0 2 2 2 1 S1 RNA binding domain Ribosomal_S27e PF01667.17 gi|116753731|ref|YP_842849.1| - 3.7e-26 90.6 0.5 3.9e-26 90.5 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zinc_ribbon_6 PF14599.6 gi|116753731|ref|YP_842849.1| - 0.023 14.7 0.9 0.033 14.2 0.9 1.2 1 0 0 1 1 1 0 Zinc-ribbon TackOD1 PF18551.1 gi|116753731|ref|YP_842849.1| - 0.03 14.0 0.3 0.032 13.9 0.3 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 eIF-5_eIF-2B PF01873.17 gi|116753731|ref|YP_842849.1| - 0.11 12.4 1.2 0.14 12.1 1.2 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zf-BED PF02892.15 gi|116753731|ref|YP_842849.1| - 0.15 12.1 1.9 1.4 9.0 0.0 2.1 1 1 1 2 2 2 0 BED zinc finger Sgf11 PF08209.11 gi|116753731|ref|YP_842849.1| - 0.25 10.9 0.1 0.25 10.9 0.1 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Ribosomal_L44 PF00935.19 gi|116753732|ref|YP_842850.1| - 5.7e-24 84.4 6.2 6.9e-24 84.1 6.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-H2C2_2 PF13465.6 gi|116753732|ref|YP_842850.1| - 0.053 14.0 7.4 1.7 9.2 0.1 2.5 2 1 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|116753732|ref|YP_842850.1| - 0.072 13.1 2.1 1.5 8.9 0.3 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Ribosomal_L33 PF00471.20 gi|116753732|ref|YP_842850.1| - 0.1 13.1 1.1 0.1 13.1 1.1 2.1 2 0 0 2 2 2 0 Ribosomal protein L33 PyrI_C PF02748.15 gi|116753732|ref|YP_842850.1| - 0.12 12.2 1.3 1.9 8.5 0.1 2.2 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C4_ClpX PF06689.13 gi|116753732|ref|YP_842850.1| - 0.18 11.7 1.6 10 6.1 0.1 2.2 2 0 0 2 2 2 0 ClpX C4-type zinc finger Zn_Tnp_IS1 PF03811.13 gi|116753732|ref|YP_842850.1| - 1.7 8.5 7.3 5.6 6.8 0.5 2.5 2 1 0 2 2 2 0 InsA N-terminal domain Sld5 PF05916.11 gi|116753733|ref|YP_842851.1| - 6.2e-05 23.4 1.8 9e-05 22.9 0.3 1.9 2 0 0 2 2 2 1 GINS complex protein CK2S PF15011.6 gi|116753733|ref|YP_842851.1| - 0.056 13.3 0.4 0.1 12.5 0.1 1.5 2 0 0 2 2 2 0 Casein Kinase 2 substrate DUF2652 PF10851.8 gi|116753733|ref|YP_842851.1| - 0.1 12.8 0.1 0.18 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2652) DUF61 PF01886.16 gi|116753733|ref|YP_842851.1| - 0.13 12.3 1.7 3 7.9 0.0 3.0 2 1 0 2 2 2 0 Protein of unknown function DUF61 DNA_primase_S PF01896.19 gi|116753734|ref|YP_842852.1| - 5.4e-20 72.2 0.0 1.8e-19 70.5 0.0 1.8 1 1 0 1 1 1 1 DNA primase small subunit CN_hydrolase PF00795.22 gi|116753735|ref|YP_842853.1| - 8.9e-35 120.3 0.0 1.1e-34 119.9 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Radical_SAM PF04055.21 gi|116753736|ref|YP_842854.1| - 9.2e-24 84.7 0.1 1.6e-23 83.9 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|116753736|ref|YP_842854.1| - 9.1e-06 25.8 0.0 2.1e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|116753736|ref|YP_842854.1| - 0.00021 21.6 0.0 0.00057 20.2 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Big_9 PF17963.1 gi|116753738|ref|YP_842856.1| - 0.025 15.3 0.3 0.025 15.3 0.3 2.8 3 0 0 3 3 3 0 Bacterial Ig domain DUF2207 PF09972.9 gi|116753739|ref|YP_842857.1| - 0.017 13.9 9.5 0.065 12.0 1.1 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Lipoprotein_Ltp PF07553.11 gi|116753739|ref|YP_842857.1| - 0.056 13.7 0.0 0.093 13.0 0.0 1.3 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein VIT1 PF01988.19 gi|116753739|ref|YP_842857.1| - 2.5 7.9 8.1 14 5.4 8.1 2.0 1 1 0 1 1 1 0 VIT family YiaAB PF05360.14 gi|116753739|ref|YP_842857.1| - 5.2 7.4 0.0 5.2 7.4 0.0 4.7 5 0 0 5 5 5 0 yiaA/B two helix domain Tubulin PF00091.25 gi|116753740|ref|YP_842858.1| - 2.1e-06 28.1 0.1 0.00036 20.8 0.2 2.9 2 1 0 2 2 2 2 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|116753740|ref|YP_842858.1| - 0.0012 18.1 0.0 0.068 12.4 0.0 2.3 2 0 0 2 2 2 2 Tubulin like DUF4352 PF11611.8 gi|116753741|ref|YP_842859.1| - 0.00048 20.4 0.0 0.0074 16.6 0.0 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4352) Peripla_BP_2 PF01497.18 gi|116753742|ref|YP_842860.1| - 3.1e-34 118.6 0.0 8.4e-34 117.2 0.0 1.7 2 0 0 2 2 2 1 Periplasmic binding protein LysM PF01476.20 gi|116753742|ref|YP_842860.1| - 0.13 12.3 0.0 1.5 8.9 0.0 2.3 2 0 0 2 2 2 0 LysM domain Methyltransf_25 PF13649.6 gi|116753743|ref|YP_842861.1| - 1.8e-13 51.0 0.1 6.9e-13 49.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116753743|ref|YP_842861.1| - 2.3e-10 41.0 0.0 5.7e-10 39.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|116753743|ref|YP_842861.1| - 3.2e-10 40.0 0.0 4.5e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|116753743|ref|YP_842861.1| - 3.5e-08 32.9 0.0 4.8e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|116753743|ref|YP_842861.1| - 2.1e-07 30.9 0.0 2.8e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|116753743|ref|YP_842861.1| - 2.4e-06 28.2 0.0 6.2e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|116753743|ref|YP_842861.1| - 2.6e-06 27.1 0.0 3.9e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|116753743|ref|YP_842861.1| - 5.6e-06 25.9 0.0 8.2e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.16 gi|116753743|ref|YP_842861.1| - 9.6e-06 25.5 0.0 1.4e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|116753743|ref|YP_842861.1| - 1.2e-05 25.2 0.0 2e-05 24.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|116753743|ref|YP_842861.1| - 6.3e-05 22.8 0.0 9.2e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_15 PF09445.10 gi|116753743|ref|YP_842861.1| - 9.6e-05 22.0 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|116753743|ref|YP_842861.1| - 0.00014 21.3 0.0 0.00021 20.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltr_RsmB-F PF01189.17 gi|116753743|ref|YP_842861.1| - 0.00015 21.5 0.0 0.00022 20.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F GidB PF02527.15 gi|116753743|ref|YP_842861.1| - 0.00024 20.5 0.0 0.00039 19.8 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G TehB PF03848.14 gi|116753743|ref|YP_842861.1| - 0.00028 20.3 0.0 0.00041 19.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|116753743|ref|YP_842861.1| - 0.00033 20.0 0.0 0.00046 19.6 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.15 gi|116753743|ref|YP_842861.1| - 0.0016 18.1 0.0 0.0025 17.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_4 PF02390.17 gi|116753743|ref|YP_842861.1| - 0.0089 15.5 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|116753743|ref|YP_842861.1| - 0.014 15.4 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|116753743|ref|YP_842861.1| - 0.021 13.9 0.0 0.032 13.3 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase DUF938 PF06080.12 gi|116753743|ref|YP_842861.1| - 0.043 13.6 0.0 0.093 12.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF938) PAXX PF15384.6 gi|116753743|ref|YP_842861.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 PAXX, PAralog of XRCC4 and XLF, also called C9orf142 tRNA_U5-meth_tr PF05958.11 gi|116753743|ref|YP_842861.1| - 0.11 11.4 0.1 0.28 10.1 0.0 1.6 2 0 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase Band_7 PF01145.25 gi|116753744|ref|YP_842862.1| - 8.7e-35 120.3 1.2 1.1e-34 120.0 1.2 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|116753744|ref|YP_842862.1| - 0.016 14.9 0.1 0.032 13.9 0.1 1.6 1 1 0 1 1 1 0 SPFH domain-Band 7 family FecCD PF01032.18 gi|116753745|ref|YP_842863.1| - 2.4e-88 296.1 34.5 3.1e-88 295.8 34.5 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|116753745|ref|YP_842863.1| - 0.079 12.4 19.7 0.13 11.7 19.7 1.4 1 0 0 1 1 1 0 ABC 3 transport family Cortexin PF11057.8 gi|116753745|ref|YP_842863.1| - 0.26 11.1 0.1 0.26 11.1 0.1 2.6 3 0 0 3 3 3 0 Cortexin of kidney ABC_tran PF00005.27 gi|116753746|ref|YP_842864.1| - 2.4e-34 118.8 0.0 3.3e-34 118.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116753746|ref|YP_842864.1| - 3.2e-10 40.3 0.3 7.8e-06 25.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|116753746|ref|YP_842864.1| - 1.6e-07 31.0 0.4 1.9e-06 27.5 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|116753746|ref|YP_842864.1| - 6.7e-07 30.0 0.0 8.1e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|116753746|ref|YP_842864.1| - 2.1e-06 27.3 0.0 4.4e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|116753746|ref|YP_842864.1| - 5.8e-06 26.3 0.0 9.5e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|116753746|ref|YP_842864.1| - 0.00033 19.6 0.5 0.69 8.6 0.0 2.8 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|116753746|ref|YP_842864.1| - 0.00035 21.0 0.0 0.00059 20.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RNA12 PF10443.9 gi|116753746|ref|YP_842864.1| - 0.0024 16.7 0.2 0.0077 15.0 0.0 1.7 2 0 0 2 2 2 1 RNA12 protein Rad17 PF03215.15 gi|116753746|ref|YP_842864.1| - 0.0048 16.8 0.1 0.082 12.8 0.0 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|116753746|ref|YP_842864.1| - 0.0048 17.2 1.0 0.044 14.1 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|116753746|ref|YP_842864.1| - 0.0079 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|116753746|ref|YP_842864.1| - 0.009 15.3 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin RsgA_GTPase PF03193.16 gi|116753746|ref|YP_842864.1| - 0.0099 15.8 0.0 0.022 14.7 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase Mg_chelatase PF01078.21 gi|116753746|ref|YP_842864.1| - 0.011 15.1 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|116753746|ref|YP_842864.1| - 0.019 14.2 4.4 0.15 11.2 4.4 2.0 1 1 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|116753746|ref|YP_842864.1| - 0.02 15.0 0.0 0.065 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|116753746|ref|YP_842864.1| - 0.022 14.5 0.0 0.064 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|116753746|ref|YP_842864.1| - 0.023 14.7 0.1 1 9.4 0.0 2.5 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 gi|116753746|ref|YP_842864.1| - 0.049 12.3 0.1 0.88 8.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|116753746|ref|YP_842864.1| - 0.067 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|116753746|ref|YP_842864.1| - 0.12 12.4 0.1 0.6 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|116753746|ref|YP_842864.1| - 0.14 12.5 0.9 1.1 9.6 0.9 2.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|116753746|ref|YP_842864.1| - 0.14 12.1 0.3 0.3 11.0 0.3 1.8 1 1 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|116753746|ref|YP_842864.1| - 0.14 12.6 0.0 0.48 10.8 0.0 1.9 1 0 0 1 1 1 0 RNA helicase G-alpha PF00503.20 gi|116753746|ref|YP_842864.1| - 0.15 11.2 0.0 0.25 10.4 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit DUF815 PF05673.13 gi|116753746|ref|YP_842864.1| - 0.16 11.1 0.4 0.39 9.8 0.0 1.8 3 0 0 3 3 3 0 Protein of unknown function (DUF815) Radical_SAM PF04055.21 gi|116753747|ref|YP_842865.1| - 4e-15 56.6 0.0 1.1e-14 55.2 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|116753747|ref|YP_842865.1| - 9e-07 29.2 0.0 1.8e-06 28.3 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|116753747|ref|YP_842865.1| - 6.4e-06 26.3 0.0 2.5e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|116753747|ref|YP_842865.1| - 1.9e-05 25.0 0.2 3.9e-05 24.1 0.2 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain CobN-Mg_chel PF02514.16 gi|116753748|ref|YP_842866.1| - 0 1370.3 0.0 0 1370.0 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase Peripla_BP_2 PF01497.18 gi|116753749|ref|YP_842867.1| - 3.3e-22 79.2 0.0 5.2e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF3855 PF12967.7 gi|116753749|ref|YP_842867.1| - 0.13 12.2 0.1 9.5 6.1 0.1 2.2 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3855) PTPS PF01242.19 gi|116753751|ref|YP_842869.1| - 1.2e-32 112.4 0.1 1.4e-32 112.2 0.1 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase tRNA_synthFbeta PF17759.1 gi|116753751|ref|YP_842869.1| - 0.085 12.3 0.0 6.1 6.2 0.0 2.1 1 1 1 2 2 2 0 Phenylalanyl tRNA synthetase beta chain CLM domain QueC PF06508.13 gi|116753752|ref|YP_842870.1| - 1.7e-60 204.1 0.0 1.9e-60 204.0 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|116753752|ref|YP_842870.1| - 1.9e-09 37.4 0.1 2.6e-07 30.4 0.1 2.5 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|116753752|ref|YP_842870.1| - 0.00043 20.1 0.1 0.0016 18.1 0.0 1.8 2 0 0 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|116753752|ref|YP_842870.1| - 0.0032 16.3 0.0 0.0037 16.1 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase AP_endonuc_2 PF01261.24 gi|116753752|ref|YP_842870.1| - 0.0045 16.5 0.1 0.017 14.6 0.1 1.8 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel ATP_bind_3 PF01171.20 gi|116753752|ref|YP_842870.1| - 0.02 14.7 0.0 0.053 13.3 0.0 1.6 2 0 0 2 2 2 0 PP-loop family Rab5-bind PF09311.11 gi|116753753|ref|YP_842871.1| - 0.011 15.2 0.1 0.012 15.0 0.1 1.1 1 0 0 1 1 1 0 Rabaptin-like protein CobN-Mg_chel PF02514.16 gi|116753754|ref|YP_842872.1| - 0 1180.4 0.0 0 1174.8 0.0 2.0 1 1 0 1 1 1 1 CobN/Magnesium Chelatase ABC_tran PF00005.27 gi|116753755|ref|YP_842873.1| - 1.7e-31 109.5 0.0 2.5e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116753755|ref|YP_842873.1| - 1.4e-12 48.1 1.4 9e-06 25.7 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|116753755|ref|YP_842873.1| - 4.9e-07 29.4 0.6 2.5e-05 23.8 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|116753755|ref|YP_842873.1| - 5.5e-05 23.6 0.1 0.00011 22.6 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|116753755|ref|YP_842873.1| - 5.9e-05 23.7 0.1 8.8e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|116753755|ref|YP_842873.1| - 0.001 19.5 0.0 0.0068 16.8 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|116753755|ref|YP_842873.1| - 0.0012 18.5 0.1 0.0026 17.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|116753755|ref|YP_842873.1| - 0.0014 18.4 1.0 0.0033 17.2 0.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|116753755|ref|YP_842873.1| - 0.002 17.5 0.1 0.044 13.2 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|116753755|ref|YP_842873.1| - 0.0026 18.0 2.3 0.049 13.9 2.3 2.1 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|116753755|ref|YP_842873.1| - 0.0037 17.5 0.1 0.072 13.3 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 gi|116753755|ref|YP_842873.1| - 0.0098 15.1 0.4 0.048 12.8 0.0 1.9 2 0 0 2 2 2 1 NB-ARC domain AAA_30 PF13604.6 gi|116753755|ref|YP_842873.1| - 0.015 15.0 0.1 0.034 13.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|116753755|ref|YP_842873.1| - 0.024 13.6 0.0 0.04 12.9 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|116753755|ref|YP_842873.1| - 0.037 14.2 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|116753755|ref|YP_842873.1| - 0.049 13.5 0.3 0.37 10.7 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_13 PF13166.6 gi|116753755|ref|YP_842873.1| - 0.057 12.1 0.1 2.7 6.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|116753755|ref|YP_842873.1| - 0.076 12.9 0.1 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain MobB PF03205.14 gi|116753755|ref|YP_842873.1| - 0.078 12.9 0.1 0.17 11.8 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|116753755|ref|YP_842873.1| - 0.084 12.8 0.7 0.68 9.8 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|116753755|ref|YP_842873.1| - 0.11 12.5 0.0 1.4 9.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|116753755|ref|YP_842873.1| - 0.11 12.5 0.1 0.88 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|116753755|ref|YP_842873.1| - 0.13 11.8 0.1 0.26 10.9 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.9 gi|116753755|ref|YP_842873.1| - 0.14 10.9 0.3 7.3 5.3 0.0 2.3 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.6 gi|116753755|ref|YP_842873.1| - 0.26 11.6 1.4 0.81 10.0 1.4 2.0 1 1 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|116753756|ref|YP_842874.1| - 2.2e-94 316.0 35.5 2.6e-94 315.7 35.5 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|116753757|ref|YP_842875.1| - 8.4e-25 87.7 0.5 4.3e-24 85.4 0.5 1.8 1 1 0 1 1 1 1 Periplasmic binding protein ABC_tran PF00005.27 gi|116753759|ref|YP_842877.1| - 1.7e-29 103.1 0.0 2.2e-29 102.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116753759|ref|YP_842877.1| - 1.3e-13 51.5 0.0 1.9e-06 28.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|116753759|ref|YP_842877.1| - 1.6e-06 27.8 0.1 0.0046 16.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|116753759|ref|YP_842877.1| - 0.0002 21.8 0.0 0.0036 17.7 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|116753759|ref|YP_842877.1| - 0.00022 21.2 0.0 0.0071 16.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|116753759|ref|YP_842877.1| - 0.00034 20.1 0.0 0.0006 19.3 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|116753759|ref|YP_842877.1| - 0.0013 18.5 0.0 0.0067 16.2 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|116753759|ref|YP_842877.1| - 0.0017 18.0 0.1 0.0081 15.9 0.0 2.1 1 1 1 2 2 2 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|116753759|ref|YP_842877.1| - 0.005 16.8 0.0 0.0076 16.2 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|116753759|ref|YP_842877.1| - 0.0062 16.8 0.0 0.027 14.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|116753759|ref|YP_842877.1| - 0.007 16.3 0.1 0.013 15.4 0.1 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_5 PF07728.14 gi|116753759|ref|YP_842877.1| - 0.0079 16.2 0.0 0.1 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|116753759|ref|YP_842877.1| - 0.0086 16.6 0.1 0.014 15.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|116753759|ref|YP_842877.1| - 0.012 15.5 0.1 0.097 12.6 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase NB-ARC PF00931.22 gi|116753759|ref|YP_842877.1| - 0.014 14.6 0.0 0.054 12.7 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain PduV-EutP PF10662.9 gi|116753759|ref|YP_842877.1| - 0.015 15.1 0.0 0.17 11.6 0.0 2.5 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation PIF1 PF05970.14 gi|116753759|ref|YP_842877.1| - 0.016 14.4 0.0 0.56 9.3 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase AAA_16 PF13191.6 gi|116753759|ref|YP_842877.1| - 0.019 15.4 0.1 0.034 14.5 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|116753759|ref|YP_842877.1| - 0.023 14.6 0.1 0.046 13.6 0.1 1.5 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|116753759|ref|YP_842877.1| - 0.033 13.5 0.0 0.048 12.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin ABC_ATPase PF09818.9 gi|116753759|ref|YP_842877.1| - 0.051 12.4 0.0 3.9 6.2 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_28 PF13521.6 gi|116753759|ref|YP_842877.1| - 0.095 12.9 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|116753759|ref|YP_842877.1| - 0.12 11.9 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|116753759|ref|YP_842877.1| - 0.13 11.9 0.0 0.29 10.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain FecCD PF01032.18 gi|116753760|ref|YP_842878.1| - 5e-93 311.5 31.3 6e-93 311.3 31.3 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|116753760|ref|YP_842878.1| - 2.3e-05 24.0 17.4 2.3e-05 24.0 17.4 1.7 2 1 0 2 2 2 1 ABC 3 transport family Peripla_BP_2 PF01497.18 gi|116753761|ref|YP_842879.1| - 1.5e-20 73.8 0.3 1.9e-20 73.4 0.3 1.2 1 0 0 1 1 1 1 Periplasmic binding protein AAA_lid_2 PF17863.1 gi|116753762|ref|YP_842880.1| - 5.5e-22 77.4 2.7 5.5e-22 77.4 2.7 2.1 2 0 0 2 2 2 1 AAA lid domain VWA_2 PF13519.6 gi|116753762|ref|YP_842880.1| - 5.1e-15 56.0 0.0 2.9e-14 53.6 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|116753762|ref|YP_842880.1| - 4.9e-10 39.5 0.1 2e-06 27.8 0.0 2.8 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) VWA PF00092.28 gi|116753762|ref|YP_842880.1| - 1.8e-08 34.9 0.0 3.1e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|116753762|ref|YP_842880.1| - 1.5e-07 31.0 0.0 1.5e-07 31.0 0.0 3.1 3 1 1 4 4 4 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|116753762|ref|YP_842880.1| - 2.5e-06 26.8 0.1 5.7e-05 22.3 0.0 2.5 2 0 0 2 2 2 1 MCM P-loop domain VWA_CoxE PF05762.14 gi|116753762|ref|YP_842880.1| - 1e-05 25.0 4.0 2.7e-05 23.7 4.0 1.7 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein Sigma54_activat PF00158.26 gi|116753762|ref|YP_842880.1| - 0.004 16.9 0.0 0.2 11.4 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA PF00004.29 gi|116753762|ref|YP_842880.1| - 0.011 16.2 0.0 0.28 11.6 0.0 3.3 4 1 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|116753762|ref|YP_842880.1| - 0.012 15.9 2.6 0.017 15.5 0.1 2.5 2 2 0 2 2 2 0 AAA ATPase domain AAA_3 PF07726.11 gi|116753762|ref|YP_842880.1| - 0.025 14.5 0.0 2.1 8.2 0.0 2.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF2894 PF11445.8 gi|116753762|ref|YP_842880.1| - 0.025 15.1 2.2 0.047 14.2 2.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2894) Mg_chelatase_C PF13335.6 gi|116753762|ref|YP_842880.1| - 0.081 13.6 2.4 0.14 12.9 0.6 2.4 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI C-terminal UreE_C PF05194.12 gi|116753762|ref|YP_842880.1| - 0.094 13.2 7.6 0.054 14.0 4.0 2.4 3 0 0 3 3 3 0 UreE urease accessory protein, C-terminal domain SelP_N PF04592.14 gi|116753762|ref|YP_842880.1| - 0.73 9.2 10.9 1.2 8.5 10.9 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region Peptidase_S49_N PF08496.10 gi|116753762|ref|YP_842880.1| - 0.83 9.7 3.9 11 6.0 2.4 2.3 2 0 0 2 2 2 0 Peptidase family S49 N-terminal DHO_dh PF01180.21 gi|116753763|ref|YP_842881.1| - 9.5e-59 199.0 0.2 1.1e-58 198.8 0.2 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|116753763|ref|YP_842881.1| - 5e-08 32.4 1.4 0.00012 21.2 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|116753763|ref|YP_842881.1| - 4.9e-05 22.9 6.3 7.6e-05 22.2 6.3 1.4 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|116753763|ref|YP_842881.1| - 0.0024 17.4 0.4 0.0071 15.8 0.1 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.12 gi|116753763|ref|YP_842881.1| - 0.006 15.8 1.2 0.009 15.2 0.2 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF561) IMPDH PF00478.25 gi|116753763|ref|YP_842881.1| - 0.6 9.1 6.3 1.1 8.2 5.0 2.0 2 1 1 3 3 3 0 IMP dehydrogenase / GMP reductase domain DHODB_Fe-S_bind PF10418.9 gi|116753764|ref|YP_842882.1| - 1.8e-09 37.2 4.2 3.2e-09 36.4 4.2 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|116753764|ref|YP_842882.1| - 7e-05 23.4 0.0 0.00035 21.2 0.0 2.0 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_3 PF13085.6 gi|116753764|ref|YP_842882.1| - 0.015 15.3 0.4 0.057 13.4 0.8 1.7 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain FAD_binding_6 PF00970.24 gi|116753764|ref|YP_842882.1| - 0.16 12.3 0.0 1.1 9.7 0.0 2.1 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain FAA_hydrolase PF01557.18 gi|116753765|ref|YP_842883.1| - 1.1e-73 247.5 0.0 1.3e-73 247.2 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|116753765|ref|YP_842883.1| - 0.29 12.1 5.5 2.1 9.3 2.6 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF2437) Rhodanese PF00581.20 gi|116753766|ref|YP_842884.1| - 7.3e-26 90.8 0.0 2.8e-18 66.4 0.0 2.6 2 1 1 3 3 3 2 Rhodanese-like domain DCR PF14047.6 gi|116753766|ref|YP_842884.1| - 0.14 12.4 0.2 0.38 11.0 0.2 1.7 1 0 0 1 1 1 0 Dppa2/4 conserved region DAP_epimerase PF01678.19 gi|116753767|ref|YP_842885.1| - 2.4e-57 192.4 0.2 7e-34 116.6 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|116753767|ref|YP_842885.1| - 0.00028 20.0 0.0 0.0034 16.5 0.0 2.0 2 0 0 2 2 2 1 Proline racemase RraA-like PF03737.15 gi|116753768|ref|YP_842886.1| - 1.1e-43 149.0 2.9 2.5e-43 147.8 2.9 1.6 1 0 0 1 1 1 1 Aldolase/RraA OMPdecase PF00215.24 gi|116753768|ref|YP_842886.1| - 6.8e-24 84.7 3.6 1.6e-23 83.5 2.8 1.9 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|116753768|ref|YP_842886.1| - 7.9e-07 28.4 5.9 8.4e-06 25.1 3.4 2.3 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|116753768|ref|YP_842886.1| - 2.1e-06 27.4 3.7 3.5e-06 26.6 3.7 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.12 gi|116753768|ref|YP_842886.1| - 5.5e-05 22.5 0.3 0.00021 20.5 0.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|116753768|ref|YP_842886.1| - 6.1e-05 22.6 0.7 0.00031 20.3 0.2 2.1 1 1 1 2 2 2 1 Histidine biosynthesis protein Pterin_bind PF00809.22 gi|116753768|ref|YP_842886.1| - 0.00019 21.2 7.7 0.005 16.5 1.8 2.8 1 1 1 2 2 2 2 Pterin binding enzyme HMGL-like PF00682.19 gi|116753768|ref|YP_842886.1| - 0.00026 20.6 2.7 0.0082 15.7 0.3 2.6 1 1 1 2 2 2 1 HMGL-like TMP-TENI PF02581.17 gi|116753768|ref|YP_842886.1| - 0.0003 20.2 3.0 0.0022 17.3 3.0 2.5 1 1 0 1 1 1 1 Thiamine monophosphate synthase PEP_hydrolase PF09370.10 gi|116753768|ref|YP_842886.1| - 0.0014 17.9 2.3 0.0029 16.9 0.4 2.4 2 1 1 3 3 3 1 Phosphoenolpyruvate hydrolase-like PEP_mutase PF13714.6 gi|116753768|ref|YP_842886.1| - 0.003 17.0 2.2 0.012 15.1 0.1 2.6 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase ThiG PF05690.14 gi|116753768|ref|YP_842886.1| - 0.0031 16.9 4.2 0.0045 16.3 2.2 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG PdxJ PF03740.13 gi|116753768|ref|YP_842886.1| - 0.0059 15.7 0.2 0.033 13.3 0.0 2.2 1 1 1 2 2 2 1 Pyridoxal phosphate biosynthesis protein PdxJ Dus PF01207.17 gi|116753768|ref|YP_842886.1| - 0.038 13.1 0.8 0.087 11.9 0.1 2.0 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) FMN_dh PF01070.18 gi|116753768|ref|YP_842886.1| - 0.05 12.6 8.3 0.13 11.3 7.0 2.2 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Trp_syntA PF00290.20 gi|116753768|ref|YP_842886.1| - 0.15 10.8 5.3 1.4 7.7 2.1 2.9 2 1 1 3 3 3 0 Tryptophan synthase alpha chain DUF3983 PF13137.6 gi|116753768|ref|YP_842886.1| - 1.7 8.5 5.9 0.28 11.0 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3983) HTH_24 PF13412.6 gi|116753769|ref|YP_842887.1| - 5.7e-07 29.0 0.0 1e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.12 gi|116753769|ref|YP_842887.1| - 2.6e-06 27.7 0.0 4.1e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_IclR PF09339.10 gi|116753769|ref|YP_842887.1| - 6e-06 26.0 0.0 1e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|116753769|ref|YP_842887.1| - 0.00016 21.6 0.1 0.00031 20.6 0.0 1.5 2 0 0 2 2 1 1 HTH domain HTH_23 PF13384.6 gi|116753769|ref|YP_842887.1| - 0.00035 20.3 0.1 0.00074 19.2 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain LacI PF00356.21 gi|116753769|ref|YP_842887.1| - 0.00063 19.5 0.7 0.0022 17.8 0.4 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family TrmB PF01978.19 gi|116753769|ref|YP_842887.1| - 0.00066 19.5 0.1 0.00094 19.0 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 gi|116753769|ref|YP_842887.1| - 0.0027 18.1 0.0 0.0042 17.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|116753769|ref|YP_842887.1| - 0.003 17.5 0.0 0.0044 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix TBPIP PF07106.13 gi|116753769|ref|YP_842887.1| - 0.0032 17.4 0.1 0.0047 16.8 0.1 1.3 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain HTH_5 PF01022.20 gi|116753769|ref|YP_842887.1| - 0.0032 17.3 0.0 0.0091 15.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|116753769|ref|YP_842887.1| - 0.0052 17.0 0.3 0.0094 16.1 0.3 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain LZ_Tnp_IS481 PF13011.6 gi|116753769|ref|YP_842887.1| - 0.0072 16.8 0.0 0.01 16.3 0.0 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_Tnp_ISL3 PF13542.6 gi|116753769|ref|YP_842887.1| - 0.0098 15.3 0.0 0.024 14.0 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_1 PF01527.20 gi|116753769|ref|YP_842887.1| - 0.01 16.1 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 0 Transposase HTH_7 PF02796.15 gi|116753769|ref|YP_842887.1| - 0.011 15.8 1.0 0.042 13.9 0.3 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase TetR_N PF00440.23 gi|116753769|ref|YP_842887.1| - 0.026 14.3 0.0 0.055 13.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family PheRS_DBD1 PF18552.1 gi|116753769|ref|YP_842887.1| - 0.026 14.3 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 PheRS DNA binding domain 1 HTH_AsnC-type PF13404.6 gi|116753769|ref|YP_842887.1| - 0.031 14.1 0.0 0.08 12.8 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_31 PF13560.6 gi|116753769|ref|YP_842887.1| - 0.047 14.1 0.0 0.091 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_micro PF17007.5 gi|116753769|ref|YP_842887.1| - 0.049 12.5 0.0 0.063 12.1 0.0 1.1 1 0 0 1 1 1 0 HTH-like Antifungal_prot PF11402.8 gi|116753769|ref|YP_842887.1| - 0.052 13.8 0.0 0.092 13.0 0.0 1.3 1 0 0 1 1 1 0 Antifungal protein TnsD PF15978.5 gi|116753769|ref|YP_842887.1| - 0.069 12.1 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Tn7-like transposition protein D GerE PF00196.19 gi|116753769|ref|YP_842887.1| - 0.099 12.2 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_17 PF12728.7 gi|116753769|ref|YP_842887.1| - 0.12 12.6 0.2 0.42 10.8 0.1 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|116753769|ref|YP_842887.1| - 0.12 12.0 0.1 0.44 10.2 0.0 1.9 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain z-alpha PF02295.17 gi|116753769|ref|YP_842887.1| - 0.13 12.3 0.1 0.31 11.1 0.1 1.7 1 1 1 2 2 2 0 Adenosine deaminase z-alpha domain HTH_20 PF12840.7 gi|116753769|ref|YP_842887.1| - 0.18 11.9 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GvpD PF07088.11 gi|116753770|ref|YP_842888.1| - 2.2e-38 132.1 0.0 3.3e-32 111.8 0.0 2.2 2 0 0 2 2 2 2 GvpD gas vesicle protein ATPase PF06745.13 gi|116753770|ref|YP_842888.1| - 2.9e-10 39.9 0.1 1.2e-07 31.4 0.0 2.7 2 1 0 2 2 2 1 KaiC AAA_16 PF13191.6 gi|116753770|ref|YP_842888.1| - 0.0015 18.9 0.0 0.003 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain DnaB_C PF03796.15 gi|116753770|ref|YP_842888.1| - 0.0019 17.6 0.0 2 7.7 0.0 2.4 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|116753770|ref|YP_842888.1| - 0.0027 17.5 0.2 0.018 14.7 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|116753770|ref|YP_842888.1| - 0.0028 18.1 0.0 0.014 15.8 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|116753770|ref|YP_842888.1| - 0.0077 16.8 0.0 0.018 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|116753770|ref|YP_842888.1| - 0.019 14.2 0.0 0.059 12.6 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin ATP-synt_ab PF00006.25 gi|116753770|ref|YP_842888.1| - 0.023 14.4 0.0 0.028 14.1 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_11 PF13086.6 gi|116753770|ref|YP_842888.1| - 0.028 14.2 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|116753770|ref|YP_842888.1| - 0.031 13.8 0.0 0.068 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|116753770|ref|YP_842888.1| - 0.033 14.3 0.0 0.23 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|116753770|ref|YP_842888.1| - 0.037 14.0 0.0 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|116753770|ref|YP_842888.1| - 0.049 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|116753770|ref|YP_842888.1| - 0.057 12.7 0.0 0.085 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|116753770|ref|YP_842888.1| - 0.12 11.6 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|116753770|ref|YP_842888.1| - 0.14 11.9 0.1 2.6 7.7 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|116753770|ref|YP_842888.1| - 0.16 12.5 0.0 0.59 10.7 0.0 1.8 2 0 0 2 2 2 0 ABC transporter AAA PF00004.29 gi|116753771|ref|YP_842889.1| - 8.4e-45 152.4 0.0 2.1e-44 151.1 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Prot_ATP_ID_OB PF16450.5 gi|116753771|ref|YP_842889.1| - 1.1e-13 50.8 0.9 3e-13 49.5 0.6 1.9 2 0 0 2 2 2 1 Proteasomal ATPase OB C-terminal domain AAA_lid_3 PF17862.1 gi|116753771|ref|YP_842889.1| - 1.3e-13 50.5 0.5 2.8e-13 49.4 0.5 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|116753771|ref|YP_842889.1| - 1.5e-06 28.3 0.1 1.4e-05 25.1 0.1 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|116753771|ref|YP_842889.1| - 4.6e-06 27.1 5.3 0.00022 21.7 0.1 3.0 3 1 0 4 4 2 1 AAA ATPase domain AAA_2 PF07724.14 gi|116753771|ref|YP_842889.1| - 6.7e-06 26.3 0.0 1.9e-05 24.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|116753771|ref|YP_842889.1| - 5.6e-05 22.9 0.0 0.00015 21.6 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|116753771|ref|YP_842889.1| - 5.6e-05 23.4 0.2 0.0092 16.3 0.0 2.6 1 1 1 2 2 2 1 AAA domain Prot_ATP_OB_N PF17758.1 gi|116753771|ref|YP_842889.1| - 5.7e-05 22.7 0.5 5.7e-05 22.7 0.5 2.1 3 0 0 3 3 1 1 Proteasomal ATPase OB N-terminal domain DUF815 PF05673.13 gi|116753771|ref|YP_842889.1| - 9.2e-05 21.7 0.0 0.00016 21.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|116753771|ref|YP_842889.1| - 0.0035 17.7 0.0 0.0061 16.9 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_18 PF13238.6 gi|116753771|ref|YP_842889.1| - 0.0046 17.5 0.0 0.023 15.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|116753771|ref|YP_842889.1| - 0.0055 15.9 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_28 PF13521.6 gi|116753771|ref|YP_842889.1| - 0.0056 16.9 0.0 0.0056 16.9 0.0 1.9 3 0 0 3 3 1 1 AAA domain IstB_IS21 PF01695.17 gi|116753771|ref|YP_842889.1| - 0.0056 16.4 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|116753771|ref|YP_842889.1| - 0.0081 15.9 0.0 0.041 13.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|116753771|ref|YP_842889.1| - 0.0081 15.6 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|116753771|ref|YP_842889.1| - 0.011 15.6 0.0 0.032 14.1 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|116753771|ref|YP_842889.1| - 0.016 15.2 0.0 0.46 10.4 0.0 2.5 1 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|116753771|ref|YP_842889.1| - 0.025 14.1 0.0 0.05 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|116753771|ref|YP_842889.1| - 0.027 14.2 0.2 0.078 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|116753771|ref|YP_842889.1| - 0.029 14.2 0.5 0.84 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|116753771|ref|YP_842889.1| - 0.033 14.4 1.3 0.034 14.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain ATPase PF06745.13 gi|116753771|ref|YP_842889.1| - 0.045 13.1 0.0 0.12 11.6 0.0 1.7 1 0 0 1 1 1 0 KaiC Parvo_NS1 PF01057.17 gi|116753771|ref|YP_842889.1| - 0.058 12.5 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NTPase_1 PF03266.15 gi|116753771|ref|YP_842889.1| - 0.075 12.9 0.0 0.3 11.0 0.0 2.0 2 0 0 2 2 2 0 NTPase Sigma54_activat PF00158.26 gi|116753771|ref|YP_842889.1| - 0.077 12.7 0.0 0.22 11.2 0.0 1.7 2 0 0 2 2 1 0 Sigma-54 interaction domain TsaE PF02367.17 gi|116753771|ref|YP_842889.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|116753771|ref|YP_842889.1| - 0.12 11.9 0.5 0.38 10.3 0.0 2.2 3 0 0 3 3 3 0 AAA domain PhoH PF02562.16 gi|116753771|ref|YP_842889.1| - 0.12 11.8 0.1 0.22 11.0 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein Zeta_toxin PF06414.12 gi|116753771|ref|YP_842889.1| - 0.18 11.1 1.0 0.31 10.3 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin Torsin PF06309.11 gi|116753771|ref|YP_842889.1| - 0.22 11.6 0.0 0.46 10.6 0.0 1.4 1 0 0 1 1 1 0 Torsin HTH_3 PF01381.22 gi|116753772|ref|YP_842890.1| - 1.9e-05 24.6 2.4 3.1e-05 24.0 2.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_25 PF13413.6 gi|116753772|ref|YP_842890.1| - 0.00017 21.4 1.4 0.00043 20.1 1.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|116753772|ref|YP_842890.1| - 0.0003 20.8 4.0 0.00048 20.1 4.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4443 PF14544.6 gi|116753772|ref|YP_842890.1| - 0.026 14.8 0.0 0.034 14.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4443) DZR PF12773.7 gi|116753772|ref|YP_842890.1| - 0.044 13.8 0.1 0.066 13.3 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon HTH_31 PF13560.6 gi|116753772|ref|YP_842890.1| - 0.062 13.7 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sua5_yciO_yrdC PF01300.18 gi|116753773|ref|YP_842891.1| - 2.2e-48 164.1 0.0 2.6e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination NTP_transf_2 PF01909.23 gi|116753774|ref|YP_842892.1| - 1e-05 25.7 0.0 2.2e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|116753774|ref|YP_842892.1| - 0.038 14.1 0.0 0.06 13.4 0.0 1.3 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase DUF2007 PF09413.10 gi|116753774|ref|YP_842892.1| - 0.05 13.8 0.0 0.095 12.9 0.0 1.5 1 0 0 1 1 1 0 Putative prokaryotic signal transducing protein Glycos_transf_3 PF00591.21 gi|116753775|ref|YP_842893.1| - 2.4e-12 47.0 1.4 1.5e-11 44.4 1.4 1.9 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|116753775|ref|YP_842893.1| - 4e-11 42.6 0.1 1.6e-10 40.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.13 gi|116753775|ref|YP_842893.1| - 3.5e-09 36.2 0.0 7.1e-09 35.2 0.0 1.5 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Molydop_binding PF01568.21 gi|116753775|ref|YP_842893.1| - 1.6e-05 24.9 0.0 3.5e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.9 gi|116753775|ref|YP_842893.1| - 0.0031 16.4 0.0 0.0049 15.8 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Hist_deacetyl PF00850.19 gi|116753776|ref|YP_842894.1| - 1.4e-39 136.4 0.2 3e-38 132.0 0.2 2.0 1 1 1 2 2 2 2 Histone deacetylase domain DUF89 PF01937.19 gi|116753777|ref|YP_842895.1| - 8.4e-37 126.9 0.0 2.6e-36 125.3 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF89 MetOD2 PF18548.1 gi|116753777|ref|YP_842895.1| - 0.0095 16.0 0.0 0.024 14.7 0.0 1.7 1 1 0 1 1 1 1 Metanogen output domain 2 PAC2 PF09754.9 gi|116753778|ref|YP_842896.1| - 8.4e-31 107.6 0.2 1.1e-30 107.3 0.2 1.0 1 0 0 1 1 1 1 PAC2 family Radical_SAM PF04055.21 gi|116753780|ref|YP_842898.1| - 4.8e-15 56.3 0.0 4.2e-14 53.3 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|116753780|ref|YP_842898.1| - 6e-07 29.9 2.0 1.4e-06 28.7 2.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|116753780|ref|YP_842898.1| - 0.0023 18.2 0.0 0.006 16.9 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|116753780|ref|YP_842898.1| - 0.064 13.4 0.8 0.13 12.4 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain SSF PF00474.17 gi|116753781|ref|YP_842899.1| - 3.7e-59 200.6 40.4 4.9e-59 200.2 40.4 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family LapD_MoxY_N PF16448.5 gi|116753781|ref|YP_842899.1| - 0.2 11.5 0.0 0.36 10.7 0.0 1.3 1 0 0 1 1 1 0 LapD/MoxY periplasmic domain Herpes_US9 PF06072.11 gi|116753781|ref|YP_842899.1| - 0.42 10.5 2.3 1.4 8.8 0.3 2.8 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 AAA PF00004.29 gi|116753783|ref|YP_842901.1| - 1.2e-15 58.1 0.1 4e-14 53.2 0.0 2.6 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|116753783|ref|YP_842901.1| - 2.5e-06 27.3 0.0 5.3e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|116753783|ref|YP_842901.1| - 5.1e-06 26.7 0.5 1.5e-05 25.2 0.1 2.1 2 0 0 2 2 2 1 AAA C-terminal domain AAA_22 PF13401.6 gi|116753783|ref|YP_842901.1| - 5.6e-06 26.7 0.1 0.05 13.9 0.0 3.6 3 2 1 4 4 4 2 AAA domain AAA_16 PF13191.6 gi|116753783|ref|YP_842901.1| - 3.6e-05 24.2 0.8 0.00046 20.6 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|116753783|ref|YP_842901.1| - 5.1e-05 23.3 0.0 8.9e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_5 PF07728.14 gi|116753783|ref|YP_842901.1| - 0.00046 20.2 0.0 0.01 15.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|116753783|ref|YP_842901.1| - 0.00055 19.7 0.1 0.0024 17.6 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|116753783|ref|YP_842901.1| - 0.0021 17.7 0.1 0.017 14.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|116753783|ref|YP_842901.1| - 0.0025 17.6 0.0 0.0071 16.1 0.0 1.8 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|116753783|ref|YP_842901.1| - 0.0032 17.5 0.0 0.0079 16.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|116753783|ref|YP_842901.1| - 0.0052 16.0 0.0 0.0088 15.3 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain RFC1 PF08519.12 gi|116753783|ref|YP_842901.1| - 0.0085 16.3 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain DNA_pol3_delta2 PF13177.6 gi|116753783|ref|YP_842901.1| - 0.012 15.4 0.0 1.4 8.7 0.0 2.3 1 1 1 2 2 2 0 DNA polymerase III, delta subunit TipAS PF07739.13 gi|116753783|ref|YP_842901.1| - 0.012 16.1 0.0 1 10.0 0.0 2.7 2 0 0 2 2 2 0 TipAS antibiotic-recognition domain AAA_18 PF13238.6 gi|116753783|ref|YP_842901.1| - 0.021 15.4 0.0 0.059 13.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|116753783|ref|YP_842901.1| - 0.027 14.9 0.0 0.052 13.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|116753783|ref|YP_842901.1| - 0.065 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|116753783|ref|YP_842901.1| - 0.087 12.9 0.0 1.5 8.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_11 PF13086.6 gi|116753783|ref|YP_842901.1| - 0.11 12.3 0.1 0.3 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|116753783|ref|YP_842901.1| - 0.11 12.9 0.2 0.8 10.1 0.0 2.5 3 0 0 3 3 3 0 AAA domain Pyridox_ox_2 PF12900.7 gi|116753784|ref|YP_842902.1| - 2e-23 82.9 0.0 2.1e-23 82.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|116753784|ref|YP_842902.1| - 1.1e-07 32.0 0.0 1.3e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase polyprenyl_synt PF00348.17 gi|116753785|ref|YP_842903.1| - 1.4e-63 214.4 0.0 1.6e-63 214.1 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Asparaginase_C PF17763.1 gi|116753785|ref|YP_842903.1| - 0.1 12.9 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain DUF615 PF04751.14 gi|116753785|ref|YP_842903.1| - 0.12 12.4 0.1 0.22 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF615) RMMBL PF07521.12 gi|116753786|ref|YP_842904.1| - 7.1e-09 35.5 0.5 1e-07 31.8 0.1 2.5 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|116753786|ref|YP_842904.1| - 1.1e-08 34.8 0.9 4.9e-08 32.7 0.2 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|116753786|ref|YP_842904.1| - 7.3e-08 32.6 0.8 1.9e-07 31.3 0.6 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily NUMOD3 PF07460.11 gi|116753786|ref|YP_842904.1| - 0.099 12.9 0.1 0.64 10.3 0.0 2.3 2 0 0 2 2 2 0 NUMOD3 motif (2 copies) FMN_dh PF01070.18 gi|116753787|ref|YP_842905.1| - 8.4e-23 80.9 0.2 7.1e-16 58.2 0.2 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|116753787|ref|YP_842905.1| - 0.00015 20.9 1.2 0.13 11.3 0.7 3.1 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|116753787|ref|YP_842905.1| - 0.018 14.2 0.2 0.11 11.6 0.1 2.1 2 1 0 2 2 2 0 Conserved region in glutamate synthase AA_kinase PF00696.28 gi|116753788|ref|YP_842906.1| - 5.1e-38 131.0 2.3 5.7e-38 130.9 2.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.26 gi|116753789|ref|YP_842907.1| - 2.6e-18 66.0 2.2 2.6e-18 66.0 2.2 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|116753789|ref|YP_842907.1| - 4.4e-12 46.2 0.7 4.4e-12 46.2 0.7 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|116753789|ref|YP_842907.1| - 0.00053 19.5 0.1 0.0014 18.1 0.1 1.7 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Memo PF01875.17 gi|116753790|ref|YP_842908.1| - 2.6e-68 230.1 0.0 3e-68 229.9 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|116753790|ref|YP_842908.1| - 0.00092 18.4 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.20 gi|116753791|ref|YP_842909.1| - 7.1e-25 87.5 0.3 4.8e-15 55.4 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.6 gi|116753791|ref|YP_842909.1| - 0.14 11.7 0.2 0.29 10.7 0.2 1.5 2 0 0 2 2 2 0 Periplasmic binding protein domain RNA_pol_Rpb6 PF01192.22 gi|116753792|ref|YP_842910.1| - 1.4e-12 47.3 0.1 1.7e-12 47.0 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|116753793|ref|YP_842911.1| - 1e-28 99.4 0.5 1.1e-28 99.3 0.5 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|116753793|ref|YP_842911.1| - 0.01 16.1 0.2 0.012 15.9 0.2 1.1 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.19 gi|116753794|ref|YP_842912.1| - 6.2e-32 110.7 0.7 6.9e-32 110.5 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|116753795|ref|YP_842913.1| - 3.2e-09 37.1 0.2 5.1e-07 30.0 0.2 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|116753796|ref|YP_842914.1| - 4.4e-12 45.8 0.1 4.9e-12 45.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|116753796|ref|YP_842914.1| - 9.6e-08 32.8 0.3 3.7e-07 30.9 0.3 1.9 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RuvA_C PF07499.13 gi|116753796|ref|YP_842914.1| - 0.077 13.5 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 RuvA, C-terminal domain HTH_3 PF01381.22 gi|116753797|ref|YP_842915.1| - 2.2e-05 24.4 0.0 4.6e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|116753797|ref|YP_842915.1| - 0.0021 17.8 0.6 0.0071 16.1 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|116753797|ref|YP_842915.1| - 0.0066 16.6 0.1 0.011 15.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|116753797|ref|YP_842915.1| - 0.0068 16.7 0.1 0.011 16.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF438 PF04282.13 gi|116753797|ref|YP_842915.1| - 0.024 14.6 0.2 0.25 11.3 0.0 2.2 2 1 0 2 2 2 0 Family of unknown function (DUF438) YdaS_antitoxin PF15943.5 gi|116753797|ref|YP_842915.1| - 0.04 13.8 0.2 0.11 12.4 0.0 1.9 2 1 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_37 PF13744.6 gi|116753797|ref|YP_842915.1| - 0.058 13.4 0.1 0.12 12.4 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_19 PF12844.7 gi|116753797|ref|YP_842915.1| - 0.074 13.1 0.0 0.36 10.9 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|116753797|ref|YP_842915.1| - 0.08 12.8 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|116753797|ref|YP_842915.1| - 0.12 12.6 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|116753797|ref|YP_842915.1| - 0.13 11.7 0.2 0.23 10.9 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Trp_repressor PF01371.19 gi|116753797|ref|YP_842915.1| - 0.14 12.3 0.2 0.35 11.0 0.1 1.7 2 1 0 2 2 2 0 Trp repressor protein Pacs-1 PF10254.9 gi|116753797|ref|YP_842915.1| - 0.18 10.7 0.0 0.21 10.5 0.0 1.1 1 0 0 1 1 1 0 PACS-1 cytosolic sorting protein Methyltransf_11 PF08241.12 gi|116753800|ref|YP_842918.1| - 4.8e-17 62.4 0.0 1.1e-16 61.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116753800|ref|YP_842918.1| - 1.2e-14 54.8 0.1 3.8e-14 53.2 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|116753800|ref|YP_842918.1| - 9.8e-11 41.8 0.0 1.3e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|116753800|ref|YP_842918.1| - 2.8e-09 36.9 0.0 1.2e-08 34.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|116753800|ref|YP_842918.1| - 6.7e-09 36.4 0.0 1.2e-08 35.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|116753800|ref|YP_842918.1| - 2.6e-05 23.7 0.0 9.1e-05 21.9 0.0 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family TPMT PF05724.11 gi|116753800|ref|YP_842918.1| - 0.00019 21.2 0.0 0.00027 20.7 0.0 1.1 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MetW PF07021.12 gi|116753800|ref|YP_842918.1| - 0.00028 20.5 0.9 0.023 14.3 0.1 2.1 1 1 1 2 2 2 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|116753800|ref|YP_842918.1| - 0.0055 16.0 0.3 0.0092 15.3 0.3 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|116753800|ref|YP_842918.1| - 0.031 14.0 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|116753800|ref|YP_842918.1| - 0.034 13.1 0.2 0.075 11.9 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) HsbA PF12296.8 gi|116753800|ref|YP_842918.1| - 0.17 12.3 0.0 0.35 11.3 0.0 1.5 2 0 0 2 2 2 0 Hydrophobic surface binding protein A ADP_ribosyl_GH PF03747.14 gi|116753801|ref|YP_842919.1| - 9.1e-69 232.4 0.2 1e-68 232.2 0.2 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase DUF531 PF04407.12 gi|116753801|ref|YP_842919.1| - 0.15 12.2 0.0 0.53 10.4 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF531) Semialdhyde_dh PF01118.24 gi|116753802|ref|YP_842920.1| - 4e-34 117.6 0.0 7.9e-34 116.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|116753802|ref|YP_842920.1| - 3.1e-21 76.3 0.0 4.1e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.17 gi|116753802|ref|YP_842920.1| - 0.00059 20.4 0.0 0.0013 19.3 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TypeIII_RM_meth PF12564.8 gi|116753802|ref|YP_842920.1| - 0.068 13.3 0.2 0.15 12.2 0.2 1.5 1 0 0 1 1 1 0 Type III restriction/modification enzyme methylation subunit GFO_IDH_MocA PF01408.22 gi|116753802|ref|YP_842920.1| - 0.12 13.3 0.0 0.2 12.5 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold CBS PF00571.28 gi|116753803|ref|YP_842921.1| - 9.5e-38 128.5 2.8 1.1e-18 67.4 0.3 2.4 3 0 0 3 3 3 2 CBS domain GAF PF01590.26 gi|116753803|ref|YP_842921.1| - 0.0088 16.7 0.0 3.4 8.3 0.0 2.1 1 1 1 2 2 2 2 GAF domain MreC PF04085.14 gi|116753803|ref|YP_842921.1| - 0.091 12.7 0.2 4 7.3 0.0 2.3 2 0 0 2 2 2 0 rod shape-determining protein MreC Regnase_1_C PF18561.1 gi|116753803|ref|YP_842921.1| - 0.26 11.1 0.5 6.4 6.6 0.0 2.4 2 0 0 2 2 2 0 Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain ArgJ PF01960.18 gi|116753804|ref|YP_842922.1| - 1.1e-132 442.4 0.5 1.3e-132 442.1 0.5 1.0 1 0 0 1 1 1 1 ArgJ family Lyase_1 PF00206.20 gi|116753805|ref|YP_842923.1| - 1.8e-59 201.7 0.0 2.7e-59 201.1 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|116753805|ref|YP_842923.1| - 6.5e-17 62.1 0.3 2.3e-16 60.3 0.0 2.2 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal CMD PF02627.20 gi|116753806|ref|YP_842924.1| - 5.4e-16 58.4 0.6 8.3e-16 57.8 0.6 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family tRNA-synt_2b PF00587.25 gi|116753806|ref|YP_842924.1| - 0.029 14.3 0.1 0.034 14.1 0.1 1.2 1 0 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) Tnp_zf-ribbon_2 PF13842.6 gi|116753806|ref|YP_842924.1| - 0.5 11.2 4.6 1.4 9.8 1.0 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon MCR_C PF04609.12 gi|116753807|ref|YP_842925.1| - 3.2e-122 406.8 0.2 3.7e-122 406.6 0.2 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.9 gi|116753808|ref|YP_842926.1| - 2e-62 209.9 0.1 2.4e-62 209.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.20 gi|116753809|ref|YP_842927.1| - 2e-59 201.3 3.6 2.5e-59 201.0 3.6 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|116753809|ref|YP_842927.1| - 5.9e-05 23.4 0.2 0.0015 18.9 0.2 2.6 1 1 0 1 1 1 1 Cell division protein FtsA MreB_Mbl PF06723.13 gi|116753809|ref|YP_842927.1| - 0.0017 17.3 0.2 0.0048 15.8 0.2 1.8 2 0 0 2 2 2 1 MreB/Mbl protein FGGY_N PF00370.21 gi|116753809|ref|YP_842927.1| - 0.0029 17.2 0.6 0.1 12.1 0.1 2.3 1 1 1 2 2 2 1 FGGY family of carbohydrate kinases, N-terminal domain Peptidase_M22 PF00814.25 gi|116753809|ref|YP_842927.1| - 0.0069 16.1 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 2 Glycoprotease family Hydant_A_N PF05378.13 gi|116753809|ref|YP_842927.1| - 0.0077 16.0 0.8 0.0077 16.0 0.8 2.8 4 0 0 4 4 4 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|116753809|ref|YP_842927.1| - 0.0084 14.8 1.5 0.065 11.8 0.1 2.3 2 0 0 2 2 2 1 MutL protein FGGY_C PF02782.16 gi|116753809|ref|YP_842927.1| - 0.014 15.1 0.2 0.039 13.7 0.2 1.7 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain Jag_N PF14804.6 gi|116753809|ref|YP_842927.1| - 0.1 12.9 0.1 0.23 11.8 0.1 1.5 1 0 0 1 1 1 0 Jag N-terminus DUF2112 PF09885.9 gi|116753810|ref|YP_842928.1| - 6.4e-63 211.1 0.0 7.2e-63 210.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.9 gi|116753811|ref|YP_842929.1| - 3.2e-43 145.7 0.0 3.9e-43 145.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) PASTA PF03793.19 gi|116753812|ref|YP_842930.1| - 0.0016 18.3 0.0 0.0051 16.6 0.0 1.9 1 0 0 1 1 1 1 PASTA domain Pro_isomerase PF00160.21 gi|116753812|ref|YP_842930.1| - 0.0082 16.4 0.0 22 5.3 0.0 3.9 3 1 0 4 4 4 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABC_tran PF00005.27 gi|116753813|ref|YP_842931.1| - 2.4e-49 167.4 0.0 2.5e-25 89.6 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|116753813|ref|YP_842931.1| - 4.7e-06 26.6 0.6 0.044 13.6 0.1 3.2 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|116753813|ref|YP_842931.1| - 0.00012 21.7 0.3 0.33 10.7 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|116753813|ref|YP_842931.1| - 0.00059 19.8 0.2 0.43 10.5 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase SMC_N PF02463.19 gi|116753813|ref|YP_842931.1| - 0.00061 19.3 4.0 0.18 11.2 0.0 3.6 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain DUF87 PF01935.17 gi|116753813|ref|YP_842931.1| - 0.0037 17.4 1.8 0.31 11.1 0.0 2.4 2 0 0 2 2 2 1 Helicase HerA, central domain NB-ARC PF00931.22 gi|116753813|ref|YP_842931.1| - 0.0047 16.1 0.8 1.3 8.2 0.1 2.4 2 0 0 2 2 2 2 NB-ARC domain SbcCD_C PF13558.6 gi|116753813|ref|YP_842931.1| - 0.013 15.8 0.0 14 6.0 0.0 3.3 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.17 gi|116753813|ref|YP_842931.1| - 0.032 14.0 1.1 33 4.2 0.0 3.6 3 1 0 3 3 3 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|116753813|ref|YP_842931.1| - 0.054 13.2 0.8 9.7 5.9 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|116753813|ref|YP_842931.1| - 0.058 13.9 0.4 3.9 7.9 0.3 2.2 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|116753813|ref|YP_842931.1| - 0.071 13.2 2.6 1.8 8.6 0.0 3.1 4 0 0 4 4 3 0 50S ribosome-binding GTPase MobB PF03205.14 gi|116753813|ref|YP_842931.1| - 0.075 12.9 0.2 3.3 7.6 0.1 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|116753813|ref|YP_842931.1| - 0.11 13.1 2.0 2.5 8.6 0.2 2.6 2 0 0 2 2 2 0 AAA domain mTERF PF02536.14 gi|116753813|ref|YP_842931.1| - 0.16 10.9 0.0 0.24 10.3 0.0 1.3 1 0 0 1 1 1 0 mTERF zf-CSL PF05207.13 gi|116753813|ref|YP_842931.1| - 0.21 11.3 0.9 0.36 10.6 0.0 1.8 2 0 0 2 2 2 0 CSL zinc finger AAA_16 PF13191.6 gi|116753813|ref|YP_842931.1| - 0.24 11.8 0.8 9 6.6 0.0 2.8 3 1 0 3 3 3 0 AAA ATPase domain Flavoprotein PF02441.19 gi|116753814|ref|YP_842932.1| - 1.3e-24 86.8 0.0 2.4e-24 85.9 0.0 1.3 1 1 0 1 1 1 1 Flavoprotein MFS_1 PF07690.16 gi|116753815|ref|YP_842933.1| - 1.6e-53 181.9 52.2 3.2e-36 125.0 25.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|116753815|ref|YP_842933.1| - 1e-06 27.9 21.9 8e-06 24.9 9.2 2.1 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|116753815|ref|YP_842933.1| - 3.2e-06 26.3 12.2 3.2e-06 26.3 12.2 2.8 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|116753815|ref|YP_842933.1| - 0.0071 14.8 23.7 0.0078 14.6 23.7 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector OATP PF03137.20 gi|116753815|ref|YP_842933.1| - 0.19 10.0 18.6 0.036 12.4 2.3 3.2 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family AsnC_trans_reg PF01037.21 gi|116753816|ref|YP_842934.1| - 1.6e-10 40.8 0.1 1.9e-10 40.5 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|116753816|ref|YP_842934.1| - 0.069 13.1 0.0 0.069 13.1 0.0 1.1 1 0 0 1 1 1 0 GYD domain TPR_1 PF00515.28 gi|116753817|ref|YP_842935.1| - 4.4e-32 108.6 0.9 7.2e-13 47.8 0.2 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|116753817|ref|YP_842935.1| - 7.3e-30 100.7 1.0 2.5e-10 39.7 0.1 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|116753817|ref|YP_842935.1| - 7.2e-22 75.7 0.5 1.5e-07 31.0 0.0 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|116753817|ref|YP_842935.1| - 4.3e-20 72.1 0.0 1.7e-08 35.0 0.0 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|116753817|ref|YP_842935.1| - 2.3e-19 68.8 1.3 1.4e-06 27.9 0.1 4.3 2 1 2 4 4 4 3 TPR repeat TPR_19 PF14559.6 gi|116753817|ref|YP_842935.1| - 3.5e-18 65.9 0.1 3.4e-07 30.7 0.1 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|116753817|ref|YP_842935.1| - 5.1e-18 64.2 0.7 0.0011 19.5 0.0 4.1 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|116753817|ref|YP_842935.1| - 7.1e-18 64.7 6.7 4.9e-10 39.6 0.5 3.7 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|116753817|ref|YP_842935.1| - 4.1e-17 61.3 2.4 1.3e-07 31.5 0.1 3.8 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|116753817|ref|YP_842935.1| - 9e-17 59.8 1.8 0.014 15.4 0.0 4.2 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|116753817|ref|YP_842935.1| - 3.7e-15 55.8 7.0 1.3e-08 34.8 0.1 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|116753817|ref|YP_842935.1| - 1.1e-11 44.2 4.4 0.0009 19.0 0.1 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|116753817|ref|YP_842935.1| - 5e-10 39.4 0.1 0.086 13.5 0.0 4.1 4 1 0 4 4 4 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|116753817|ref|YP_842935.1| - 1.6e-08 34.5 0.1 0.01 15.9 0.0 3.3 3 0 0 3 3 3 2 Fis1 C-terminal tetratricopeptide repeat ANAPC3 PF12895.7 gi|116753817|ref|YP_842935.1| - 5.2e-08 33.0 0.3 0.00029 21.0 0.0 2.1 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|116753817|ref|YP_842935.1| - 5.9e-05 22.2 0.1 0.12 11.3 0.0 2.1 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|116753817|ref|YP_842935.1| - 9e-05 22.5 0.0 0.069 13.2 0.0 2.4 1 1 1 2 2 2 2 Putative TPR-like repeat PPR PF01535.20 gi|116753817|ref|YP_842935.1| - 0.0001 22.3 1.0 2.5 8.5 0.0 4.1 4 0 0 4 4 4 1 PPR repeat TPR_4 PF07721.14 gi|116753817|ref|YP_842935.1| - 0.00028 21.2 0.0 6.3 7.7 0.0 3.7 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_15 PF13429.6 gi|116753817|ref|YP_842935.1| - 0.00033 20.0 0.0 0.005 16.1 0.0 1.9 1 1 1 2 2 2 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|116753817|ref|YP_842935.1| - 0.00049 20.2 0.2 0.19 11.8 0.0 2.8 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|116753817|ref|YP_842935.1| - 0.00079 19.9 0.5 0.012 16.1 0.1 2.4 1 1 1 2 2 2 1 Bacterial transcriptional activator domain MIT PF04212.18 gi|116753817|ref|YP_842935.1| - 0.0012 18.8 1.3 8.6 6.5 0.1 3.8 3 1 1 4 4 4 0 MIT (microtubule interacting and transport) domain TPR_MalT PF17874.1 gi|116753817|ref|YP_842935.1| - 0.0017 17.8 0.0 0.43 9.9 0.0 2.8 1 1 1 2 2 2 2 MalT-like TPR region TPR_3 PF07720.12 gi|116753817|ref|YP_842935.1| - 0.0041 17.1 0.0 1.3 9.1 0.0 3.7 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_5 PF12688.7 gi|116753817|ref|YP_842935.1| - 0.0083 16.4 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 Tetratrico peptide repeat RPN7 PF10602.9 gi|116753817|ref|YP_842935.1| - 0.0088 15.8 0.3 0.37 10.5 0.2 3.0 1 1 2 3 3 3 1 26S proteasome subunit RPN7 Rapsyn_N PF10579.9 gi|116753817|ref|YP_842935.1| - 0.014 15.5 0.0 11 6.2 0.0 3.1 1 1 2 3 3 3 0 Rapsyn N-terminal myristoylation and linker region SGTA_dimer PF16546.5 gi|116753817|ref|YP_842935.1| - 0.024 14.4 0.0 6 6.7 0.0 2.4 2 0 0 2 2 2 0 Homodimerisation domain of SGTA TPR_20 PF14561.6 gi|116753817|ref|YP_842935.1| - 0.045 14.1 0.2 0.32 11.4 0.1 2.1 1 1 1 2 2 2 0 Tetratricopeptide repeat DUF627 PF04781.12 gi|116753817|ref|YP_842935.1| - 0.088 12.8 0.0 12 5.9 0.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF627) Alkyl_sulf_dimr PF14863.6 gi|116753817|ref|YP_842935.1| - 0.11 12.9 0.0 4 7.9 0.0 2.4 1 1 1 2 2 2 0 Alkyl sulfatase dimerisation DUF3467 PF11950.8 gi|116753818|ref|YP_842936.1| - 2.3e-17 63.0 0.0 3e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) DUF123 PF01986.16 gi|116753820|ref|YP_842938.1| - 2.2e-28 98.6 0.0 2.7e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Radical_SAM PF04055.21 gi|116753821|ref|YP_842939.1| - 7.7e-13 49.2 10.5 4.3e-12 46.7 6.7 3.0 2 2 0 2 2 2 1 Radical SAM superfamily Cobl PF09469.10 gi|116753821|ref|YP_842939.1| - 0.16 12.2 0.0 0.53 10.6 0.0 1.9 2 0 0 2 2 2 0 Cordon-bleu ubiquitin-like domain FmdE PF02663.14 gi|116753822|ref|YP_842940.1| - 2.3e-22 79.4 0.0 1.2e-18 67.5 0.0 2.3 2 0 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon SBP_bac_5 PF00496.22 gi|116753823|ref|YP_842941.1| - 6.3e-83 278.8 1.6 8.2e-83 278.4 1.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle CbiA PF01656.23 gi|116753824|ref|YP_842942.1| - 2.3e-14 53.5 0.0 3.9e-14 52.8 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|116753824|ref|YP_842942.1| - 1.8e-09 37.8 0.0 3.3e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|116753824|ref|YP_842942.1| - 1.3e-08 34.6 0.0 3.4e-08 33.2 0.0 1.7 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|116753824|ref|YP_842942.1| - 3.8e-06 26.6 0.0 0.002 17.7 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|116753824|ref|YP_842942.1| - 9.7e-06 25.0 0.3 1.6e-05 24.3 0.3 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase APS_kinase PF01583.20 gi|116753824|ref|YP_842942.1| - 1.5e-05 24.9 0.0 3e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase Fer4_NifH PF00142.18 gi|116753824|ref|YP_842942.1| - 3.7e-05 23.3 1.0 0.00017 21.1 0.0 2.2 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF87 PF01935.17 gi|116753824|ref|YP_842942.1| - 4.7e-05 23.6 0.0 0.0001 22.5 0.0 1.7 1 0 0 1 1 1 1 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|116753824|ref|YP_842942.1| - 9.4e-05 21.8 0.1 0.0011 18.3 0.1 2.1 2 0 0 2 2 2 1 Zeta toxin CLP1_P PF16575.5 gi|116753824|ref|YP_842942.1| - 0.00012 21.9 0.0 0.0059 16.4 0.0 2.1 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop TrkA_N PF02254.18 gi|116753824|ref|YP_842942.1| - 0.00038 20.7 0.3 0.43 10.8 0.0 2.5 2 1 0 2 2 2 2 TrkA-N domain MipZ PF09140.11 gi|116753824|ref|YP_842942.1| - 0.00046 19.6 0.0 0.004 16.5 0.0 2.0 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.22 gi|116753824|ref|YP_842942.1| - 0.00076 19.2 0.0 0.0068 16.1 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|116753824|ref|YP_842942.1| - 0.0032 17.6 0.0 0.013 15.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|116753824|ref|YP_842942.1| - 0.0035 17.9 0.4 0.008 16.7 0.3 1.7 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|116753824|ref|YP_842942.1| - 0.0039 16.7 0.0 0.0056 16.2 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_24 PF13479.6 gi|116753824|ref|YP_842942.1| - 0.0045 16.7 0.0 0.012 15.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|116753824|ref|YP_842942.1| - 0.005 16.4 0.4 1.6 8.3 0.1 2.7 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain TrwB_AAD_bind PF10412.9 gi|116753824|ref|YP_842942.1| - 0.0058 15.6 0.1 0.011 14.7 0.1 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_25 PF13481.6 gi|116753824|ref|YP_842942.1| - 0.0062 16.1 0.0 0.014 14.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|116753824|ref|YP_842942.1| - 0.0071 16.7 0.2 0.018 15.5 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.7 gi|116753824|ref|YP_842942.1| - 0.023 13.6 0.1 0.064 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain MeaB PF03308.16 gi|116753824|ref|YP_842942.1| - 0.031 13.2 0.1 0.052 12.5 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|116753824|ref|YP_842942.1| - 0.031 14.8 0.0 0.037 14.5 0.0 1.7 1 1 0 1 1 1 0 ABC transporter AAA_22 PF13401.6 gi|116753824|ref|YP_842942.1| - 0.041 14.2 0.0 0.072 13.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|116753824|ref|YP_842942.1| - 0.066 13.6 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF3964 PF13107.6 gi|116753824|ref|YP_842942.1| - 0.15 12.5 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3964) VirC1 PF07015.11 gi|116753824|ref|YP_842942.1| - 0.19 11.0 0.1 0.44 9.8 0.1 1.6 1 0 0 1 1 1 0 VirC1 protein MMR_HSR1 PF01926.23 gi|116753824|ref|YP_842942.1| - 0.2 11.7 0.2 20 5.3 0.1 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|116753824|ref|YP_842942.1| - 0.3 10.9 0.6 0.49 10.2 0.6 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrmO PF01980.16 gi|116753825|ref|YP_842943.1| - 1.2e-33 115.9 0.0 1.4e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O Lycopene_cycl PF05834.12 gi|116753826|ref|YP_842944.1| - 1.1e-10 41.1 0.1 4.2e-10 39.2 0.0 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein DAO PF01266.24 gi|116753826|ref|YP_842944.1| - 6.6e-07 29.2 1.3 0.0049 16.5 0.0 3.8 2 1 2 4 4 4 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|116753826|ref|YP_842944.1| - 1.7e-06 27.5 0.1 0.00071 18.9 0.0 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|116753826|ref|YP_842944.1| - 3.7e-05 23.3 0.9 3.7e-05 23.3 0.9 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|116753826|ref|YP_842944.1| - 0.00012 21.5 0.0 0.0048 16.2 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|116753826|ref|YP_842944.1| - 0.00012 21.4 0.2 0.0053 16.0 0.0 2.4 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.14 gi|116753826|ref|YP_842944.1| - 0.00017 20.6 0.1 0.00043 19.3 0.0 1.6 2 0 0 2 2 2 1 Tryptophan halogenase GIDA PF01134.22 gi|116753826|ref|YP_842944.1| - 0.00026 20.2 0.0 0.0012 18.0 0.1 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|116753826|ref|YP_842944.1| - 0.0022 16.8 0.0 0.0041 15.9 0.0 1.4 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|116753826|ref|YP_842944.1| - 0.022 15.0 0.2 0.15 12.3 0.1 2.5 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|116753826|ref|YP_842944.1| - 0.022 13.8 0.4 0.055 12.5 0.4 1.6 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|116753826|ref|YP_842944.1| - 0.073 12.3 0.0 0.23 10.7 0.0 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|116753826|ref|YP_842944.1| - 0.11 12.4 0.0 1.1 9.3 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding DUF5050 PF16472.5 gi|116753827|ref|YP_842945.1| - 0.00046 19.5 2.6 0.059 12.6 0.1 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF5050) DUF5038 PF16441.5 gi|116753827|ref|YP_842945.1| - 0.007 16.4 0.9 0.074 13.1 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF5038) DP-EP PF08985.11 gi|116753827|ref|YP_842945.1| - 0.093 12.9 0.0 2.3 8.4 0.0 2.3 2 0 0 2 2 2 0 DP-EP family PQQ_3 PF13570.6 gi|116753827|ref|YP_842945.1| - 0.42 11.2 2.4 3.3 8.3 0.0 3.3 3 1 1 4 4 4 0 PQQ-like domain MFS_1 PF07690.16 gi|116753828|ref|YP_842946.1| - 1.1e-38 133.1 70.5 1.9e-27 96.1 38.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF412 PF04217.13 gi|116753828|ref|YP_842946.1| - 8.9 6.2 9.4 4 7.3 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function, DUF412 MFS_3 PF05977.13 gi|116753828|ref|YP_842946.1| - 9.6 4.5 21.7 0.46 8.8 4.6 2.5 2 1 0 2 2 2 0 Transmembrane secretion effector NAD_binding_1 PF00175.21 gi|116753830|ref|YP_842948.1| - 1.2e-11 45.2 0.0 2e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.9 gi|116753830|ref|YP_842948.1| - 1.9e-10 40.4 1.6 3.6e-10 39.5 1.6 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|116753830|ref|YP_842948.1| - 6e-06 26.5 0.0 9.6e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_8 PF08022.12 gi|116753830|ref|YP_842948.1| - 0.0078 16.3 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 FAD-binding domain TrkH PF02386.16 gi|116753831|ref|YP_842949.1| - 5.8e-62 209.7 15.4 1.1e-54 185.7 15.1 2.7 1 1 1 2 2 2 2 Cation transport protein DDE_Tnp_1_5 PF13737.6 gi|116753832|ref|YP_842950.1| - 8.2e-33 113.1 0.0 3.2e-31 107.9 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|116753832|ref|YP_842950.1| - 9e-21 74.5 0.1 1.6e-20 73.7 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain NMT1_2 PF13379.6 gi|116753833|ref|YP_842951.1| - 3.1e-38 131.9 0.0 4.5e-38 131.4 0.0 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|116753833|ref|YP_842951.1| - 1.8e-18 67.3 0.0 2.5e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_3 PF16868.5 gi|116753833|ref|YP_842951.1| - 1.1e-06 28.3 0.0 4.7e-05 23.0 0.0 2.4 2 1 1 3 3 3 1 NMT1-like family Phosphonate-bd PF12974.7 gi|116753833|ref|YP_842951.1| - 0.0017 18.0 0.0 0.0022 17.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein VitK2_biosynth PF02621.14 gi|116753833|ref|YP_842951.1| - 0.09 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Menaquinone biosynthesis BPD_transp_1 PF00528.22 gi|116753834|ref|YP_842952.1| - 3.3e-19 69.3 13.9 5.3e-19 68.7 13.9 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component YibE_F PF07907.11 gi|116753834|ref|YP_842952.1| - 0.0061 16.1 0.9 0.0061 16.1 0.9 2.1 3 0 0 3 3 3 1 YibE/F-like protein Adenine_deam_C PF13382.6 gi|116753835|ref|YP_842953.1| - 3.5e-67 225.0 0.1 7.9e-67 223.8 0.1 1.6 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|116753835|ref|YP_842953.1| - 1.5e-32 113.3 0.5 2.7e-31 109.2 0.5 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|116753835|ref|YP_842953.1| - 6.4e-08 32.5 0.8 2.6e-05 23.9 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Radical_SAM PF04055.21 gi|116753836|ref|YP_842954.1| - 6.9e-18 65.6 0.6 1.9e-13 51.1 0.2 2.4 2 0 0 2 2 2 2 Radical SAM superfamily B12-binding PF02310.19 gi|116753836|ref|YP_842954.1| - 1.3e-11 44.6 0.0 2.2e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 B12 binding domain FCH PF00611.23 gi|116753837|ref|YP_842955.1| - 0.16 12.3 0.0 0.21 11.9 0.0 1.2 1 0 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain BH4 PF02180.17 gi|116753837|ref|YP_842955.1| - 0.38 10.6 2.4 0.36 10.7 0.7 1.8 2 0 0 2 2 2 0 Bcl-2 homology region 4 GXGXG PF01493.19 gi|116753838|ref|YP_842956.1| - 2e-07 30.8 13.9 6.1e-05 22.7 4.4 2.5 2 1 0 2 2 2 2 GXGXG motif XPB_DRD PF18458.1 gi|116753838|ref|YP_842956.1| - 0.077 12.9 0.2 12 5.8 0.0 3.0 3 0 0 3 3 3 0 Xeroderma pigmentosum group B helicase damage recognition domain DUF2807 PF10988.8 gi|116753838|ref|YP_842956.1| - 0.089 12.6 0.3 0.15 11.9 0.3 1.3 1 0 0 1 1 1 0 Putative auto-transporter adhesin, head GIN domain FapA PF03961.13 gi|116753838|ref|YP_842956.1| - 1.3 7.5 4.8 2.2 6.8 0.1 2.1 2 0 0 2 2 2 0 Flagellar Assembly Protein A Glycos_transf_1 PF00534.20 gi|116753839|ref|YP_842957.1| - 9.9e-33 113.1 0.0 1.5e-32 112.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|116753839|ref|YP_842957.1| - 4.6e-28 98.3 0.1 7.3e-28 97.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|116753839|ref|YP_842957.1| - 1.1e-24 87.3 0.1 2.7e-23 82.8 0.1 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|116753839|ref|YP_842957.1| - 4.1e-13 50.1 0.1 1.6e-12 48.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|116753839|ref|YP_842957.1| - 5.9e-06 26.6 0.0 1.1e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|116753840|ref|YP_842958.1| - 3e-28 98.7 0.0 4.2e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|116753840|ref|YP_842958.1| - 3.6e-11 43.4 0.0 5.3e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|116753840|ref|YP_842958.1| - 0.0019 17.8 0.0 0.0027 17.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Peripla_BP_2 PF01497.18 gi|116753841|ref|YP_842959.1| - 2.9e-27 95.8 0.0 5.7e-27 94.8 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein ABC_tran PF00005.27 gi|116753842|ref|YP_842960.1| - 2.5e-33 115.5 0.0 3.9e-33 114.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116753842|ref|YP_842960.1| - 8.4e-17 61.9 0.0 9.3e-09 35.5 0.0 2.5 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|116753842|ref|YP_842960.1| - 0.00075 20.1 0.3 0.0013 19.2 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|116753842|ref|YP_842960.1| - 0.0032 17.2 0.0 1.4 8.6 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|116753842|ref|YP_842960.1| - 0.004 16.6 0.0 0.013 14.9 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|116753842|ref|YP_842960.1| - 0.0061 16.2 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|116753842|ref|YP_842960.1| - 0.014 15.1 0.1 0.045 13.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|116753842|ref|YP_842960.1| - 0.03 14.8 0.0 0.052 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|116753842|ref|YP_842960.1| - 0.089 13.0 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|116753842|ref|YP_842960.1| - 0.1 12.3 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|116753842|ref|YP_842960.1| - 0.16 12.3 0.6 1.6 9.0 0.6 2.4 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|116753842|ref|YP_842960.1| - 0.19 11.7 0.0 0.41 10.5 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain ABC2_membrane PF01061.24 gi|116753843|ref|YP_842961.1| - 5.4e-24 84.8 19.7 5.4e-24 84.8 19.7 1.9 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|116753843|ref|YP_842961.1| - 3.2e-10 39.7 24.8 3.2e-10 39.7 24.8 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF2070 PF09843.9 gi|116753843|ref|YP_842961.1| - 5.6 5.1 17.1 7.8 4.7 17.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) AAA PF00004.29 gi|116753844|ref|YP_842962.1| - 3.9e-98 325.0 0.0 4.4e-48 163.1 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|116753844|ref|YP_842962.1| - 7.1e-33 112.2 3.5 2.4e-16 59.2 0.4 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|116753844|ref|YP_842962.1| - 1.8e-28 98.5 0.3 8.7e-28 96.3 0.3 2.2 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.6 gi|116753844|ref|YP_842962.1| - 1.1e-15 58.4 0.9 1.1e-06 29.1 0.0 3.5 3 1 0 3 3 2 2 AAA ATPase domain RuvB_N PF05496.12 gi|116753844|ref|YP_842962.1| - 1.7e-15 57.1 0.0 9.3e-08 32.0 0.0 2.9 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|116753844|ref|YP_842962.1| - 2.1e-15 57.2 0.0 3.8e-07 30.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|116753844|ref|YP_842962.1| - 6.9e-13 48.8 0.2 1.3e-05 25.2 0.1 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|116753844|ref|YP_842962.1| - 2.4e-12 47.2 0.0 8.8e-07 29.2 0.0 2.8 2 1 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|116753844|ref|YP_842962.1| - 3.5e-12 45.9 0.0 1e-11 44.4 0.0 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|116753844|ref|YP_842962.1| - 1e-11 45.3 1.1 0.0014 18.9 0.0 3.9 2 2 2 4 4 4 2 AAA domain TIP49 PF06068.13 gi|116753844|ref|YP_842962.1| - 5.6e-11 42.2 0.1 0.00044 19.6 0.0 2.8 2 1 1 3 3 3 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|116753844|ref|YP_842962.1| - 1.7e-08 34.6 0.0 0.0043 17.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|116753844|ref|YP_842962.1| - 3.1e-08 33.6 0.0 0.0079 15.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|116753844|ref|YP_842962.1| - 3.9e-08 33.7 0.1 0.0033 17.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|116753844|ref|YP_842962.1| - 5.6e-08 33.4 0.0 0.01 16.4 0.0 2.9 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.22 gi|116753844|ref|YP_842962.1| - 6.4e-08 33.0 0.0 0.012 16.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|116753844|ref|YP_842962.1| - 2.3e-07 30.4 0.1 0.02 14.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|116753844|ref|YP_842962.1| - 5.2e-07 29.7 0.0 0.047 13.7 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|116753844|ref|YP_842962.1| - 2.1e-06 27.6 0.0 0.04 13.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|116753844|ref|YP_842962.1| - 2.8e-06 27.1 0.1 0.14 11.9 0.0 3.3 3 1 0 3 3 2 2 Sigma-54 interaction domain PhoH PF02562.16 gi|116753844|ref|YP_842962.1| - 3.8e-06 26.5 0.3 0.25 10.8 0.0 3.5 4 0 0 4 4 3 2 PhoH-like protein Zeta_toxin PF06414.12 gi|116753844|ref|YP_842962.1| - 6e-06 25.7 0.0 0.053 12.8 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin Bac_DnaA PF00308.18 gi|116753844|ref|YP_842962.1| - 9.2e-06 25.7 0.0 0.33 10.7 0.0 3.3 3 1 0 3 3 2 2 Bacterial dnaA protein AAA_24 PF13479.6 gi|116753844|ref|YP_842962.1| - 1e-05 25.4 0.0 0.061 13.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|116753844|ref|YP_842962.1| - 1.1e-05 25.0 0.4 0.78 9.0 0.0 3.5 2 1 1 3 3 3 2 KaiC NACHT PF05729.12 gi|116753844|ref|YP_842962.1| - 1.1e-05 25.4 0.3 0.16 11.9 0.0 3.4 3 1 1 4 4 3 2 NACHT domain AAA_11 PF13086.6 gi|116753844|ref|YP_842962.1| - 1.1e-05 25.4 0.2 0.04 13.7 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|116753844|ref|YP_842962.1| - 1.3e-05 24.9 7.1 0.49 9.9 0.7 4.3 2 2 0 3 3 3 2 AAA domain AAA_7 PF12775.7 gi|116753844|ref|YP_842962.1| - 1.3e-05 24.7 0.0 0.17 11.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region Vps4_C PF09336.10 gi|116753844|ref|YP_842962.1| - 3.3e-05 23.8 0.4 0.24 11.5 0.1 2.7 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain ABC_tran PF00005.27 gi|116753844|ref|YP_842962.1| - 3.5e-05 24.3 0.0 0.35 11.4 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_30 PF13604.6 gi|116753844|ref|YP_842962.1| - 9e-05 22.3 0.2 0.55 9.9 0.0 2.7 2 1 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|116753844|ref|YP_842962.1| - 0.00014 21.1 0.0 0.11 11.7 0.0 2.6 3 0 0 3 3 2 1 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|116753844|ref|YP_842962.1| - 0.00016 21.1 0.0 0.4 9.9 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.17 gi|116753844|ref|YP_842962.1| - 0.00028 20.1 0.0 0.36 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 TniB PF05621.11 gi|116753844|ref|YP_842962.1| - 0.00042 19.8 0.0 2 7.8 0.0 3.4 2 1 1 3 3 3 1 Bacterial TniB protein NB-ARC PF00931.22 gi|116753844|ref|YP_842962.1| - 0.00053 19.2 0.0 1 8.5 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_19 PF13245.6 gi|116753844|ref|YP_842962.1| - 0.00065 20.1 0.8 1.2 9.4 0.0 3.1 2 1 0 3 3 3 1 AAA domain Sigma54_activ_2 PF14532.6 gi|116753844|ref|YP_842962.1| - 0.00069 19.7 0.0 0.54 10.4 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.6 gi|116753844|ref|YP_842962.1| - 0.0011 19.5 0.0 2 8.8 0.0 2.9 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|116753844|ref|YP_842962.1| - 0.0017 18.4 0.0 1.3 8.8 0.0 2.8 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea AFG1_ATPase PF03969.16 gi|116753844|ref|YP_842962.1| - 0.0024 16.8 0.0 1.7 7.4 0.0 2.4 2 0 0 2 2 2 2 AFG1-like ATPase Viral_helicase1 PF01443.18 gi|116753844|ref|YP_842962.1| - 0.0026 17.6 0.0 1.5 8.5 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Cytidylate_kin PF02224.18 gi|116753844|ref|YP_842962.1| - 0.0048 16.6 0.1 3.5 7.3 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase NTPase_1 PF03266.15 gi|116753844|ref|YP_842962.1| - 0.0095 15.9 0.6 4 7.3 0.0 3.4 2 1 1 3 3 3 0 NTPase T2SSE PF00437.20 gi|116753844|ref|YP_842962.1| - 0.01 14.9 0.0 1.8 7.6 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein ResIII PF04851.15 gi|116753844|ref|YP_842962.1| - 0.011 15.8 0.0 4.6 7.2 0.0 2.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit CPT PF07931.12 gi|116753844|ref|YP_842962.1| - 0.018 14.9 0.0 5.6 6.8 0.0 2.6 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Rad17 PF03215.15 gi|116753844|ref|YP_842962.1| - 0.035 14.0 0.0 17 5.3 0.0 2.9 2 1 0 2 2 2 0 Rad17 P-loop domain Zot PF05707.12 gi|116753844|ref|YP_842962.1| - 0.05 13.2 0.0 5.6 6.6 0.0 3.3 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) SRPRB PF09439.10 gi|116753844|ref|YP_842962.1| - 0.069 12.6 0.0 6.7 6.1 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit KAP_NTPase PF07693.14 gi|116753844|ref|YP_842962.1| - 0.072 12.3 0.0 3.9 6.6 0.0 2.5 2 1 0 2 2 2 0 KAP family P-loop domain AAA_29 PF13555.6 gi|116753844|ref|YP_842962.1| - 0.073 12.8 0.0 12 5.7 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Torsin PF06309.11 gi|116753844|ref|YP_842962.1| - 0.085 13.0 0.0 6.4 6.9 0.0 2.4 2 0 0 2 2 2 0 Torsin DAP3 PF10236.9 gi|116753844|ref|YP_842962.1| - 0.11 11.7 0.0 3.6 6.7 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Guanylate_kin PF00625.21 gi|116753844|ref|YP_842962.1| - 0.12 12.1 0.1 47 3.6 0.0 3.5 2 2 2 4 4 3 0 Guanylate kinase cIII PF08134.11 gi|116753844|ref|YP_842962.1| - 0.14 11.9 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 cIII protein family PduV-EutP PF10662.9 gi|116753844|ref|YP_842962.1| - 0.17 11.6 0.0 27 4.5 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation PIF1 PF05970.14 gi|116753844|ref|YP_842962.1| - 0.19 10.8 0.0 9.3 5.3 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase DeoC PF01791.9 gi|116753845|ref|YP_842963.1| - 2.2e-59 200.9 0.1 2.6e-59 200.7 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|116753845|ref|YP_842963.1| - 0.0036 16.9 0.0 0.004 16.8 0.0 1.3 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Radical_SAM PF04055.21 gi|116753845|ref|YP_842963.1| - 0.05 14.0 0.0 0.096 13.1 0.0 1.5 1 0 0 1 1 1 0 Radical SAM superfamily DEAD_assoc PF08494.11 gi|116753846|ref|YP_842964.1| - 4.4e-49 166.9 0.0 9e-49 165.9 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|116753846|ref|YP_842964.1| - 2e-29 102.6 0.0 1.4e-28 99.9 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|116753846|ref|YP_842964.1| - 6.9e-19 68.2 0.0 2.5e-17 63.2 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|116753846|ref|YP_842964.1| - 3.9e-05 23.7 0.0 0.00021 21.4 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|116753846|ref|YP_842964.1| - 0.13 12.6 0.0 0.53 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|116753846|ref|YP_842964.1| - 0.15 12.3 0.2 2 8.7 0.2 2.8 1 1 0 1 1 1 0 AAA domain Metallophos PF00149.28 gi|116753847|ref|YP_842965.1| - 0.0019 18.7 1.1 0.0046 17.5 0.4 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DBD_HTH PF18430.1 gi|116753847|ref|YP_842965.1| - 0.15 11.8 0.3 0.48 10.3 0.2 1.8 2 0 0 2 2 2 0 Putative DNA-binding domain UPF0051 PF01458.17 gi|116753848|ref|YP_842966.1| - 3.1e-51 174.2 0.0 3.8e-51 173.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|116753849|ref|YP_842967.1| - 1.2e-26 93.9 0.0 1.7e-26 93.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116753849|ref|YP_842967.1| - 5e-09 36.4 0.6 0.0023 17.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|116753849|ref|YP_842967.1| - 0.00012 21.6 0.2 0.31 10.4 0.2 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|116753849|ref|YP_842967.1| - 0.0028 18.2 1.4 0.0035 17.9 0.4 1.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|116753849|ref|YP_842967.1| - 0.0038 16.9 0.0 0.0071 16.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|116753849|ref|YP_842967.1| - 0.009 16.4 0.0 0.013 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|116753849|ref|YP_842967.1| - 0.013 16.0 0.1 0.05 14.0 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|116753849|ref|YP_842967.1| - 0.015 15.2 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|116753849|ref|YP_842967.1| - 0.019 15.3 0.1 0.41 10.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|116753849|ref|YP_842967.1| - 0.03 14.2 0.0 0.049 13.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|116753849|ref|YP_842967.1| - 0.034 14.2 0.0 0.72 9.9 0.0 2.5 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|116753849|ref|YP_842967.1| - 0.043 13.1 0.0 1.3 8.2 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_28 PF13521.6 gi|116753849|ref|YP_842967.1| - 0.065 13.5 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|116753849|ref|YP_842967.1| - 0.081 13.5 0.0 8.6 6.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|116753849|ref|YP_842967.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|116753849|ref|YP_842967.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|116753849|ref|YP_842967.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATP-synt_ab PF00006.25 gi|116753849|ref|YP_842967.1| - 0.17 11.5 0.0 0.32 10.6 0.0 1.2 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.6 gi|116753849|ref|YP_842967.1| - 0.2 11.4 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|116753849|ref|YP_842967.1| - 0.22 10.6 0.1 2.3 7.4 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain DLIC PF05783.11 gi|116753849|ref|YP_842967.1| - 0.24 10.2 0.0 0.31 9.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) SprB PF13573.6 gi|116753850|ref|YP_842968.1| - 0.00042 20.0 0.3 0.0014 18.4 0.3 1.8 1 0 0 1 1 1 1 SprB repeat BiPBP_C PF06832.12 gi|116753850|ref|YP_842968.1| - 0.028 14.4 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family Big_7 PF17957.1 gi|116753850|ref|YP_842968.1| - 0.034 14.9 0.1 0.12 13.1 0.1 2.0 1 1 0 1 1 1 0 Bacterial Ig domain TIR_2 PF13676.6 gi|116753851|ref|YP_842969.1| - 1.4e-07 32.1 0.0 2.3e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 TIR domain zf-ribbon_3 PF13248.6 gi|116753851|ref|YP_842969.1| - 0.1 12.1 0.3 2.5 7.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|116753851|ref|YP_842969.1| - 0.12 12.4 0.6 0.79 9.8 0.8 2.0 1 1 1 2 2 2 0 CpXC protein DZR PF12773.7 gi|116753851|ref|YP_842969.1| - 0.64 10.1 3.1 0.55 10.3 0.2 2.3 2 1 0 2 2 2 0 Double zinc ribbon DHQS PF01959.16 gi|116753852|ref|YP_842970.1| - 1.2e-148 494.7 1.3 1.4e-148 494.6 1.3 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II DUF1953 PF09196.10 gi|116753852|ref|YP_842970.1| - 0.00061 19.5 0.2 0.57 10.0 0.2 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF1953) OapA PF04225.12 gi|116753852|ref|YP_842970.1| - 0.0063 16.6 0.0 2.1 8.5 0.0 2.7 3 0 0 3 3 3 2 Opacity-associated protein A LysM-like domain Peripla_BP_1 PF00532.21 gi|116753852|ref|YP_842970.1| - 0.068 12.6 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Prot_ATP_ID_OB PF16450.5 gi|116753852|ref|YP_842970.1| - 0.08 12.9 0.9 1.5 8.8 0.0 3.1 3 1 0 3 3 3 0 Proteasomal ATPase OB C-terminal domain Hint PF01079.20 gi|116753852|ref|YP_842970.1| - 0.1 12.1 0.1 12 5.4 0.0 2.5 1 1 0 2 2 2 0 Hint module TOBE_2 PF08402.10 gi|116753852|ref|YP_842970.1| - 0.2 11.8 1.0 5.3 7.3 0.1 3.0 3 0 0 3 3 3 0 TOBE domain DHquinase_I PF01487.15 gi|116753853|ref|YP_842971.1| - 1.9e-44 152.6 0.0 2.3e-44 152.4 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase ALAD PF00490.21 gi|116753853|ref|YP_842971.1| - 0.21 10.7 0.1 0.41 9.8 0.0 1.4 2 0 0 2 2 2 0 Delta-aminolevulinic acid dehydratase F_actin_cap_B PF01115.17 gi|116753854|ref|YP_842972.1| - 0.1 12.2 0.0 3.5 7.2 0.0 2.0 1 1 1 2 2 2 0 F-actin capping protein, beta subunit Aminotran_1_2 PF00155.21 gi|116753855|ref|YP_842973.1| - 8.6e-65 219.3 0.0 9.7e-65 219.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|116753855|ref|YP_842973.1| - 3.2e-11 43.1 0.0 4.9e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|116753855|ref|YP_842973.1| - 6.7e-08 31.9 0.0 1e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|116753855|ref|YP_842973.1| - 7.1e-07 28.1 0.0 1e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|116753855|ref|YP_842973.1| - 0.001 18.4 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_3 PF00202.21 gi|116753855|ref|YP_842973.1| - 0.027 13.1 0.0 0.06 12.0 0.0 1.5 2 0 0 2 2 2 0 Aminotransferase class-III RHH_1 PF01402.21 gi|116753856|ref|YP_842974.1| - 3.3e-11 42.7 0.6 6.4e-11 41.8 0.6 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|116753856|ref|YP_842974.1| - 0.0032 17.4 0.1 0.0058 16.6 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain PSK_trans_fac PF07704.11 gi|116753856|ref|YP_842974.1| - 0.025 15.3 0.1 0.059 14.1 0.0 1.7 2 0 0 2 2 2 0 Rv0623-like transcription factor HTH_19 PF12844.7 gi|116753856|ref|YP_842974.1| - 0.15 12.1 0.4 0.35 10.9 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain ThiF PF00899.21 gi|116753857|ref|YP_842975.1| - 5.2e-59 199.6 0.0 6.2e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 ThiF family Polysacc_synt_2 PF02719.15 gi|116753857|ref|YP_842975.1| - 0.027 13.6 0.0 0.45 9.6 0.0 2.1 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein Sacchrp_dh_NADP PF03435.18 gi|116753857|ref|YP_842975.1| - 0.14 12.4 0.1 0.26 11.5 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|116753857|ref|YP_842975.1| - 0.16 11.6 0.1 0.25 11.0 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|116753857|ref|YP_842975.1| - 0.25 10.6 0.4 0.33 10.2 0.4 1.1 1 0 0 1 1 1 0 FAD binding domain PhosphMutase PF10143.9 gi|116753858|ref|YP_842976.1| - 9e-57 191.6 0.0 1.5e-56 190.9 0.0 1.4 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|116753858|ref|YP_842976.1| - 8e-39 133.5 0.0 9.2e-39 133.3 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily MCR_C PF04609.12 gi|116753859|ref|YP_842977.1| - 3.2e-08 33.0 0.6 1.7e-07 30.6 0.4 2.1 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF460 PF04312.13 gi|116753860|ref|YP_842978.1| - 6.4e-50 168.5 0.0 2e-49 166.9 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) CCD48 PF15799.5 gi|116753860|ref|YP_842978.1| - 0.00033 19.1 2.7 0.00033 19.1 2.7 1.6 2 0 0 2 2 2 1 Coiled-coil domain-containing protein 48 PKcGMP_CC PF16808.5 gi|116753860|ref|YP_842978.1| - 0.0029 17.4 1.5 0.0029 17.4 1.5 2.9 2 0 0 2 2 2 1 Coiled-coil N-terminus of cGMP-dependent protein kinase FAM76 PF16046.5 gi|116753860|ref|YP_842978.1| - 0.019 14.4 3.4 0.034 13.5 3.4 1.5 1 0 0 1 1 1 0 FAM76 protein acVLRF1 PF18859.1 gi|116753860|ref|YP_842978.1| - 0.036 14.4 0.1 0.036 14.4 0.1 2.7 3 0 0 3 3 2 0 Actinobacteria/chloroflexi VLRF1 release factor Hydantoinase_B PF02538.14 gi|116753860|ref|YP_842978.1| - 0.093 11.1 1.2 0.83 8.0 1.1 2.1 1 1 0 2 2 2 0 Hydantoinase B/oxoprolinase MPS2 PF17060.5 gi|116753860|ref|YP_842978.1| - 0.17 11.1 7.6 0.27 10.5 7.6 1.3 1 0 0 1 1 1 0 Monopolar spindle protein 2 AAA_13 PF13166.6 gi|116753860|ref|YP_842978.1| - 0.18 10.4 3.8 0.28 9.8 3.8 1.2 1 0 0 1 1 1 0 AAA domain Fib_alpha PF08702.10 gi|116753860|ref|YP_842978.1| - 0.2 11.8 3.9 0.58 10.3 3.9 1.8 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Noelin-1 PF12308.8 gi|116753860|ref|YP_842978.1| - 0.2 11.6 1.3 0.68 9.9 0.9 2.1 1 1 0 1 1 1 0 Neurogenesis glycoprotein DUF4795 PF16043.5 gi|116753860|ref|YP_842978.1| - 0.32 10.6 10.3 5.6 6.5 10.1 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Herpes_UL6 PF01763.16 gi|116753860|ref|YP_842978.1| - 0.36 9.3 4.4 0.57 8.6 4.4 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like Csm1_N PF18504.1 gi|116753860|ref|YP_842978.1| - 0.44 10.9 9.2 0.8 10.1 1.0 3.3 1 1 2 3 3 3 0 Csm1 N-terminal domain DUF641 PF04859.12 gi|116753860|ref|YP_842978.1| - 0.46 10.8 13.2 0.061 13.7 1.3 3.1 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) Bap31_Bap29_C PF18035.1 gi|116753860|ref|YP_842978.1| - 0.5 10.4 7.2 0.74 9.9 1.7 3.2 3 0 0 3 3 3 0 Bap31/Bap29 cytoplasmic coiled-coil domain Csm2_III-A PF03750.13 gi|116753860|ref|YP_842978.1| - 0.72 10.7 6.3 2 9.3 5.2 2.2 2 0 0 2 2 2 0 Csm2 Type III-A FlaC_arch PF05377.11 gi|116753860|ref|YP_842978.1| - 0.79 10.2 3.1 4.8 7.6 0.5 3.2 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) FapA PF03961.13 gi|116753860|ref|YP_842978.1| - 2.2 6.8 6.1 4.4 5.8 6.1 1.4 1 0 0 1 1 1 0 Flagellar Assembly Protein A YabA PF06156.13 gi|116753860|ref|YP_842978.1| - 2.9 8.6 5.3 14 6.4 5.3 2.2 1 1 0 1 1 1 0 Initiation control protein YabA DUF4407 PF14362.6 gi|116753860|ref|YP_842978.1| - 7 5.9 9.7 0.3 10.4 1.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Spc7 PF08317.11 gi|116753860|ref|YP_842978.1| - 8.1 5.2 14.7 0.52 9.1 7.6 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein RIO1 PF01163.22 gi|116753861|ref|YP_842979.1| - 1e-40 139.4 0.1 1.4e-40 139.0 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|116753861|ref|YP_842979.1| - 6.1e-23 80.9 0.0 1.1e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|116753861|ref|YP_842979.1| - 2.1e-05 24.6 3.1 0.073 13.0 0.3 2.9 1 1 1 2 2 2 2 Phosphotransferase enzyme family HTH_IclR PF09339.10 gi|116753861|ref|YP_842979.1| - 0.0014 18.4 0.1 0.022 14.6 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|116753861|ref|YP_842979.1| - 0.011 15.6 0.0 0.22 11.4 0.0 2.5 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Iso_dh PF00180.20 gi|116753862|ref|YP_842980.1| - 1e-68 232.0 0.0 1.6e-68 231.4 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF166 PF02593.14 gi|116753863|ref|YP_842981.1| - 7.4e-70 234.9 0.0 8.4e-70 234.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DapB_N PF01113.20 gi|116753863|ref|YP_842981.1| - 0.11 12.7 0.0 0.31 11.1 0.0 1.8 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Fumerase PF05681.14 gi|116753864|ref|YP_842982.1| - 7.5e-84 281.3 0.0 8.5e-84 281.2 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.12 gi|116753865|ref|YP_842983.1| - 6.1e-29 100.8 0.0 8.3e-29 100.4 0.0 1.1 1 0 0 1 1 1 1 Fumarase C-terminus DUF5616 PF18481.1 gi|116753866|ref|YP_842984.1| - 8.4e-47 159.0 0.1 1.1e-46 158.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|116753866|ref|YP_842984.1| - 1.7e-05 24.4 0.3 4.2e-05 23.1 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF434) ATP-grasp_5 PF13549.6 gi|116753867|ref|YP_842985.1| - 1.3e-74 250.4 0.0 1.8e-74 249.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|116753867|ref|YP_842985.1| - 3.1e-42 143.7 0.1 1.1e-41 141.9 0.1 2.0 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|116753867|ref|YP_842985.1| - 1.5e-24 86.7 0.1 5.7e-24 84.9 0.1 2.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|116753867|ref|YP_842985.1| - 5.5e-14 52.6 0.4 2.4e-13 50.6 0.0 2.3 3 0 0 3 3 3 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|116753867|ref|YP_842985.1| - 0.0024 17.4 0.1 0.0052 16.4 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain TPP_enzyme_M PF00205.22 gi|116753867|ref|YP_842985.1| - 0.12 12.1 0.2 1 9.1 0.0 2.5 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain DUF134 PF02001.16 gi|116753869|ref|YP_842987.1| - 1.2e-21 77.0 0.0 1.8e-21 76.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|116753869|ref|YP_842987.1| - 0.00043 19.9 1.5 0.00052 19.6 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 ParA PF10609.9 gi|116753870|ref|YP_842988.1| - 1.8e-96 322.3 0.1 2.1e-96 322.1 0.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|116753870|ref|YP_842988.1| - 7.9e-13 48.6 0.0 1.5e-12 47.7 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|116753870|ref|YP_842988.1| - 1.2e-09 37.8 0.0 1.8e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.6 gi|116753870|ref|YP_842988.1| - 3.6e-06 27.0 1.0 2e-05 24.6 1.0 2.1 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|116753870|ref|YP_842988.1| - 2.9e-05 23.4 3.9 0.00014 21.2 1.3 2.4 2 1 0 2 2 2 1 Anion-transporting ATPase APS_kinase PF01583.20 gi|116753870|ref|YP_842988.1| - 0.0015 18.5 0.0 0.0023 17.9 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase CLP1_P PF16575.5 gi|116753870|ref|YP_842988.1| - 0.003 17.4 0.0 0.0054 16.5 0.0 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|116753870|ref|YP_842988.1| - 0.0049 15.9 0.1 0.008 15.2 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|116753870|ref|YP_842988.1| - 0.0053 16.2 0.0 0.014 14.8 0.1 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Desulfoferrod_N PF06397.12 gi|116753870|ref|YP_842988.1| - 0.0058 16.2 0.4 0.011 15.3 0.4 1.4 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain AAA_26 PF13500.6 gi|116753870|ref|YP_842988.1| - 0.0063 16.4 0.1 1.3 8.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|116753870|ref|YP_842988.1| - 0.012 15.1 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein CBP_BcsQ PF06564.12 gi|116753870|ref|YP_842988.1| - 0.017 14.6 0.1 0.069 12.6 0.0 1.8 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|116753870|ref|YP_842988.1| - 0.031 13.9 0.1 0.055 13.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|116753870|ref|YP_842988.1| - 0.037 13.3 0.1 0.055 12.7 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin zf-Sec23_Sec24 PF04810.15 gi|116753870|ref|YP_842988.1| - 0.056 13.5 0.0 0.093 12.8 0.0 1.3 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger DUF1610 PF07754.11 gi|116753870|ref|YP_842988.1| - 0.067 13.2 0.2 0.13 12.2 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) AAA_25 PF13481.6 gi|116753870|ref|YP_842988.1| - 0.11 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain LpxK PF02606.14 gi|116753870|ref|YP_842988.1| - 0.17 11.0 0.1 0.33 10.0 0.1 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase KTI12 PF08433.10 gi|116753870|ref|YP_842988.1| - 0.17 11.3 0.0 0.3 10.5 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.6 gi|116753870|ref|YP_842988.1| - 0.18 11.5 0.1 0.31 10.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|116753871|ref|YP_842989.1| - 4.6e-30 105.2 0.0 7e-30 104.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|116753871|ref|YP_842989.1| - 3.1e-05 24.0 0.7 0.0018 18.3 0.1 3.3 2 2 1 3 3 3 1 B12 binding domain Nitro_FeMo-Co PF02579.17 gi|116753872|ref|YP_842990.1| - 3.8e-24 84.8 0.0 4.6e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.17 gi|116753873|ref|YP_842991.1| - 2.4e-24 85.5 0.0 3.1e-24 85.1 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor TMP_2 PF06791.13 gi|116753873|ref|YP_842991.1| - 0.0018 18.0 1.7 0.0025 17.5 1.7 1.1 1 0 0 1 1 1 1 Prophage tail length tape measure protein DUF5304 PF17230.2 gi|116753873|ref|YP_842991.1| - 0.052 13.8 0.0 0.067 13.4 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5304) DUF3482 PF11981.8 gi|116753873|ref|YP_842991.1| - 0.077 12.4 2.3 0.11 11.8 2.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Lactamase_B PF00753.27 gi|116753874|ref|YP_842992.1| - 2.2e-11 44.2 1.1 3.8e-11 43.4 0.7 1.8 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|116753874|ref|YP_842992.1| - 2.5e-09 37.0 0.6 6.2e-09 35.7 0.6 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|116753874|ref|YP_842992.1| - 0.0028 17.1 0.1 0.0045 16.5 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Radical_SAM PF04055.21 gi|116753875|ref|YP_842993.1| - 3.4e-13 50.3 0.0 4.7e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Bile_Hydr_Trans PF04775.14 gi|116753876|ref|YP_842994.1| - 0.076 13.1 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 Acyl-CoA thioester hydrolase/BAAT N-terminal region SAD_SRA PF02182.17 gi|116753876|ref|YP_842994.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 SAD/SRA domain Deltameth_res PF16020.5 gi|116753876|ref|YP_842994.1| - 0.15 12.0 0.1 0.27 11.2 0.1 1.4 1 0 0 1 1 1 0 Deltamethrin resistance CbiA PF01656.23 gi|116753877|ref|YP_842995.1| - 9.5e-19 67.7 0.0 1.2e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.27 gi|116753877|ref|YP_842995.1| - 1.3e-11 43.8 12.2 1.3e-06 27.9 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain ParA PF10609.9 gi|116753877|ref|YP_842995.1| - 1.4e-08 34.5 0.1 0.0026 17.3 0.0 2.7 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_7 PF12838.7 gi|116753877|ref|YP_842995.1| - 5.2e-08 33.4 5.1 0.0008 19.9 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116753877|ref|YP_842995.1| - 1e-06 28.5 12.4 0.0025 17.8 2.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|116753877|ref|YP_842995.1| - 1.5e-06 28.2 9.5 4.4e-06 26.7 9.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|116753877|ref|YP_842995.1| - 4.6e-06 26.6 0.3 0.068 13.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_15 PF13459.6 gi|116753877|ref|YP_842995.1| - 5.2e-06 27.1 6.0 0.0099 16.6 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|116753877|ref|YP_842995.1| - 5.4e-06 26.2 14.7 0.0056 16.7 3.3 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116753877|ref|YP_842995.1| - 0.00016 21.7 13.3 0.004 17.3 13.7 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|116753877|ref|YP_842995.1| - 0.00034 20.6 1.3 0.22 11.4 0.0 2.8 2 1 1 3 3 3 1 RsgA GTPase Fer4_8 PF13183.6 gi|116753877|ref|YP_842995.1| - 0.00037 20.9 3.5 0.18 12.3 0.8 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|116753877|ref|YP_842995.1| - 0.0014 19.1 0.1 0.006 17.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Fer4_10 PF13237.6 gi|116753877|ref|YP_842995.1| - 0.0024 18.0 14.2 0.087 13.0 15.2 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116753877|ref|YP_842995.1| - 0.0036 18.2 10.9 0.22 12.5 2.2 2.5 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain ArsA_ATPase PF02374.15 gi|116753877|ref|YP_842995.1| - 0.012 14.8 2.5 0.026 13.7 2.5 1.5 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_24 PF13479.6 gi|116753877|ref|YP_842995.1| - 0.027 14.2 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|116753877|ref|YP_842995.1| - 0.028 13.6 0.8 2 7.5 0.4 2.4 2 0 0 2 2 2 0 NB-ARC domain Fer4_3 PF12798.7 gi|116753877|ref|YP_842995.1| - 0.079 13.9 15.1 0.14 13.2 2.4 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain CBP_BcsQ PF06564.12 gi|116753877|ref|YP_842995.1| - 0.12 11.8 0.0 6.2 6.2 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA_23 PF13476.6 gi|116753877|ref|YP_842995.1| - 0.13 12.8 0.0 0.18 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|116753877|ref|YP_842995.1| - 0.17 11.5 0.3 0.65 9.5 0.2 1.9 2 0 0 2 2 2 0 AAA domain Fer4_17 PF13534.6 gi|116753877|ref|YP_842995.1| - 0.37 11.4 11.7 1.4 9.5 3.1 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_30 PF13604.6 gi|116753877|ref|YP_842995.1| - 0.59 9.8 1.6 1.1 9.0 0.4 1.8 2 0 0 2 2 2 0 AAA domain Fer4_4 PF12800.7 gi|116753877|ref|YP_842995.1| - 0.6 10.8 19.2 1.8 9.3 3.6 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|116753877|ref|YP_842995.1| - 5.9 7.5 16.2 3.2 8.4 4.3 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I CbiA PF01656.23 gi|116753878|ref|YP_842996.1| - 1.8e-14 53.9 0.0 2.5e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.27 gi|116753878|ref|YP_842996.1| - 1e-13 50.5 13.3 5.3e-07 29.2 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|116753878|ref|YP_842996.1| - 4.1e-13 48.8 13.8 3.2e-06 27.0 3.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain ParA PF10609.9 gi|116753878|ref|YP_842996.1| - 3.1e-10 39.9 0.0 0.00099 18.6 0.0 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_16 PF13484.6 gi|116753878|ref|YP_842996.1| - 1.8e-08 35.2 5.2 0.00058 20.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|116753878|ref|YP_842996.1| - 5.6e-08 32.8 10.7 1.1e-07 31.9 10.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116753878|ref|YP_842996.1| - 3.7e-07 30.6 35.6 2.1e-05 25.0 13.1 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116753878|ref|YP_842996.1| - 4.2e-07 30.0 20.9 7.5e-05 22.8 12.7 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116753878|ref|YP_842996.1| - 9.2e-06 25.7 13.2 3.2e-05 24.0 12.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|116753878|ref|YP_842996.1| - 2.8e-05 24.1 0.1 0.1 12.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_8 PF13183.6 gi|116753878|ref|YP_842996.1| - 5.1e-05 23.6 6.9 0.02 15.3 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116753878|ref|YP_842996.1| - 6.5e-05 22.8 16.2 0.0014 18.6 2.7 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|116753878|ref|YP_842996.1| - 8.9e-05 22.7 12.8 0.0068 16.8 2.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|116753878|ref|YP_842996.1| - 0.00069 20.1 8.3 0.079 13.5 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|116753878|ref|YP_842996.1| - 0.0024 18.7 9.0 0.056 14.3 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|116753878|ref|YP_842996.1| - 0.036 15.0 6.1 0.036 15.0 6.1 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain AAA_25 PF13481.6 gi|116753878|ref|YP_842996.1| - 0.059 12.9 0.1 0.46 10.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain Fer4_NifH PF00142.18 gi|116753878|ref|YP_842996.1| - 0.14 11.6 0.1 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF5320 PF17253.2 gi|116753879|ref|YP_842997.1| - 1.6e-11 45.1 0.4 1.1e-09 39.3 0.4 2.0 1 1 0 1 1 1 1 Family of unknown function (DUF5320) XhlA PF10779.9 gi|116753879|ref|YP_842997.1| - 0.33 11.2 0.2 0.33 11.2 0.2 1.5 2 0 0 2 2 2 0 Haemolysin XhlA Cation_efflux PF01545.21 gi|116753880|ref|YP_842998.1| - 1.3e-30 106.6 15.6 1.8e-30 106.2 15.6 1.2 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|116753880|ref|YP_842998.1| - 6.9e-17 61.4 1.5 1.3e-16 60.4 1.5 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Nitro_FeMo-Co PF02579.17 gi|116753880|ref|YP_842998.1| - 7e-13 48.7 0.0 1.3e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Zip PF02535.22 gi|116753881|ref|YP_842999.1| - 4.3e-22 78.8 22.6 2.3e-18 66.5 8.6 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter MCR_alpha_N PF02745.15 gi|116753882|ref|YP_843000.1| - 1.5e-149 496.7 0.0 2e-149 496.3 0.0 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|116753882|ref|YP_843000.1| - 4.1e-70 234.1 2.8 8.2e-70 233.2 2.8 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_gamma PF02240.16 gi|116753883|ref|YP_843001.1| - 7.2e-121 402.1 0.0 8.2e-121 401.9 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_D PF02505.14 gi|116753884|ref|YP_843002.1| - 2.1e-56 189.7 0.0 2.4e-56 189.5 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.18 gi|116753885|ref|YP_843003.1| - 3.6e-136 452.6 7.5 5.6e-136 452.0 7.5 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|116753885|ref|YP_843003.1| - 5.5e-79 264.0 0.8 5.5e-79 264.0 0.8 1.7 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain Rep_fac_C PF08542.11 gi|116753885|ref|YP_843003.1| - 0.18 12.3 0.1 0.42 11.0 0.1 1.6 1 0 0 1 1 1 0 Replication factor C C-terminal domain Radical_SAM PF04055.21 gi|116753886|ref|YP_843004.1| - 4.1e-15 56.5 0.1 7.5e-15 55.7 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|116753886|ref|YP_843004.1| - 0.00072 19.7 0.1 0.0013 18.8 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|116753886|ref|YP_843004.1| - 0.00088 19.7 0.0 0.002 18.6 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|116753886|ref|YP_843004.1| - 0.0026 18.0 0.1 0.0055 17.0 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TRP_2 PF08344.11 gi|116753886|ref|YP_843004.1| - 0.041 14.1 0.2 0.086 13.1 0.2 1.5 1 0 0 1 1 1 0 Transient receptor ion channel II Rho_N PF07498.12 gi|116753886|ref|YP_843004.1| - 0.16 11.9 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 Rho termination factor, N-terminal domain FKBP_C PF00254.28 gi|116753887|ref|YP_843005.1| - 6.2e-09 36.1 0.0 3.3e-08 33.7 0.0 2.1 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|116753887|ref|YP_843005.1| - 8.4e-05 22.6 0.0 0.00018 21.5 0.0 1.6 1 0 0 1 1 1 1 FKBP26_C-terminal ATP_bind_3 PF01171.20 gi|116753888|ref|YP_843006.1| - 1.8e-13 50.6 0.0 3e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|116753888|ref|YP_843006.1| - 1.9e-09 36.8 0.0 2.5e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|116753888|ref|YP_843006.1| - 4.1e-05 23.7 0.0 6.4e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family zn-ribbon_14 PF16503.5 gi|116753888|ref|YP_843006.1| - 5.4e-05 22.6 0.7 5.4e-05 22.6 0.7 3.0 3 0 0 3 3 3 1 Zinc-ribbon Asn_synthase PF00733.21 gi|116753888|ref|YP_843006.1| - 0.0004 20.2 0.0 0.00058 19.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|116753888|ref|YP_843006.1| - 0.00054 19.2 0.0 0.00077 18.6 0.0 1.1 1 0 0 1 1 1 1 NAD synthase ThiI PF02568.14 gi|116753888|ref|YP_843006.1| - 0.0031 17.1 0.0 0.0049 16.5 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|116753888|ref|YP_843006.1| - 0.05 13.1 0.2 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC zinc_ribbon_2 PF13240.6 gi|116753888|ref|YP_843006.1| - 1.8 8.4 8.5 36 4.2 0.1 3.6 3 0 0 3 3 3 0 zinc-ribbon domain RecR PF02132.15 gi|116753888|ref|YP_843006.1| - 2.3 7.9 8.4 0.7 9.5 1.3 3.0 3 0 0 3 3 3 0 RecR protein Cbl_N PF02262.16 gi|116753889|ref|YP_843007.1| - 0.1 12.6 0.3 2.9 7.9 0.0 2.2 1 1 1 2 2 2 0 CBL proto-oncogene N-terminal domain 1 ABC_tran PF00005.27 gi|116753890|ref|YP_843008.1| - 1.6e-33 116.2 0.0 4.5e-33 114.7 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|116753890|ref|YP_843008.1| - 1.8e-16 60.8 0.5 8.8e-11 42.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|116753890|ref|YP_843008.1| - 6.1e-07 29.1 0.0 3.7e-06 26.5 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|116753890|ref|YP_843008.1| - 0.0018 18.1 0.0 0.032 14.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|116753890|ref|YP_843008.1| - 0.002 17.8 1.8 0.002 17.8 0.2 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|116753890|ref|YP_843008.1| - 0.0097 16.4 0.0 0.015 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|116753890|ref|YP_843008.1| - 0.017 15.0 0.1 0.04 13.8 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 gi|116753890|ref|YP_843008.1| - 0.017 15.4 0.0 0.1 12.8 0.0 2.2 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|116753890|ref|YP_843008.1| - 0.033 14.4 0.0 0.36 11.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.17 gi|116753890|ref|YP_843008.1| - 0.037 13.8 0.2 5.6 6.7 0.0 2.5 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|116753890|ref|YP_843008.1| - 0.038 14.4 0.0 0.067 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|116753890|ref|YP_843008.1| - 0.038 14.1 0.0 2.2 8.4 0.1 2.5 3 0 0 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|116753890|ref|YP_843008.1| - 0.058 12.7 0.0 0.18 11.1 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_24 PF13479.6 gi|116753890|ref|YP_843008.1| - 0.07 12.9 0.4 0.27 10.9 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|116753890|ref|YP_843008.1| - 0.096 12.3 0.0 0.24 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain BCA_ABC_TP_C PF12399.8 gi|116753890|ref|YP_843008.1| - 0.23 11.4 1.2 0.32 11.0 0.1 1.9 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter MMR_HSR1 PF01926.23 gi|116753890|ref|YP_843008.1| - 0.25 11.4 0.7 0.79 9.8 0.2 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase CbiQ PF02361.16 gi|116753891|ref|YP_843009.1| - 2.8e-41 141.5 10.9 4.4e-41 140.9 10.9 1.3 1 0 0 1 1 1 1 Cobalt transport protein CbiN PF02553.15 gi|116753892|ref|YP_843010.1| - 4.5e-23 81.0 1.5 5.6e-23 80.7 1.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbtB PF09489.10 gi|116753892|ref|YP_843010.1| - 0.14 12.3 0.2 11 6.3 0.1 2.1 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) CbiM PF01891.16 gi|116753893|ref|YP_843011.1| - 1.3e-56 191.7 17.3 1.5e-56 191.5 17.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region TRAM PF01938.20 gi|116753894|ref|YP_843012.1| - 1e-14 54.2 0.9 1.2e-14 54.0 0.9 1.1 1 0 0 1 1 1 1 TRAM domain Ribosomal_L12_N PF16320.5 gi|116753896|ref|YP_843014.1| - 5e-05 22.9 12.4 1.7 8.4 0.2 4.8 4 0 0 4 4 4 3 Ribosomal protein L7/L12 dimerisation domain SapC PF07277.11 gi|116753896|ref|YP_843014.1| - 0.00012 21.7 0.1 0.24 10.9 0.0 2.2 2 0 0 2 2 2 2 SapC DEK_C PF08766.11 gi|116753896|ref|YP_843014.1| - 0.0031 17.4 7.7 12 5.9 0.1 4.2 2 2 2 4 4 4 0 DEK C terminal domain DUF1104 PF06518.11 gi|116753896|ref|YP_843014.1| - 0.014 15.7 14.5 1.3 9.5 2.4 3.5 2 2 2 4 4 4 0 Protein of unknown function (DUF1104) Inj_translocase PF16928.5 gi|116753896|ref|YP_843014.1| - 0.023 14.1 0.3 3.6 7.0 0.0 2.1 2 0 0 2 2 2 0 DNA/protein translocase of phage P22 injectosome CAAP1 PF15335.6 gi|116753896|ref|YP_843014.1| - 0.084 13.4 6.1 5.4 7.7 0.8 3.1 2 2 0 2 2 2 0 Caspase activity and apoptosis inhibitor 1 MerR-DNA-bind PF09278.11 gi|116753896|ref|YP_843014.1| - 0.096 13.2 9.3 2.1 8.9 0.9 2.7 2 1 0 2 2 2 0 MerR, DNA binding Rho_N PF07498.12 gi|116753896|ref|YP_843014.1| - 0.098 12.6 11.6 34 4.5 0.2 4.6 4 1 0 4 4 4 0 Rho termination factor, N-terminal domain HTH_37 PF13744.6 gi|116753896|ref|YP_843014.1| - 0.18 11.8 4.9 6.9 6.7 0.5 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain GP17 PF17420.2 gi|116753896|ref|YP_843014.1| - 0.21 11.8 0.6 19 5.5 0.1 2.4 2 0 0 2 2 2 0 Superinfection exclusion gene product 17 GDPD PF03009.17 gi|116753896|ref|YP_843014.1| - 0.3 10.8 2.8 16 5.1 0.3 2.7 2 2 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Sir1 PF11603.8 gi|116753896|ref|YP_843014.1| - 0.33 11.4 2.1 13 6.3 0.2 2.1 2 0 0 2 2 2 0 Regulatory protein Sir1 Topoisom_I_N PF02919.15 gi|116753896|ref|YP_843014.1| - 0.46 10.0 1.3 22 4.5 0.1 2.0 2 0 0 2 2 2 0 Eukaryotic DNA topoisomerase I, DNA binding fragment Prok-TraM PF09228.10 gi|116753896|ref|YP_843014.1| - 0.48 10.8 7.2 8.4 6.8 0.9 2.8 2 2 0 2 2 2 0 Prokaryotic Transcriptional repressor TraM Phage_TAC_7 PF10109.9 gi|116753896|ref|YP_843014.1| - 0.7 10.0 4.4 41 4.4 0.7 3.5 1 1 2 3 3 3 0 Phage tail assembly chaperone proteins, E, or 41 or 14 DUF2482 PF10655.9 gi|116753896|ref|YP_843014.1| - 3.2 8.3 6.9 21 5.7 0.4 2.4 2 0 0 2 2 2 0 Hypothetical protein of unknown function (DUF2482) EURL PF06937.11 gi|116753896|ref|YP_843014.1| - 8.2 5.7 10.3 14 5.0 1.9 2.7 2 2 0 2 2 2 0 EURL protein MarR_2 PF12802.7 gi|116753897|ref|YP_843015.1| - 2.8e-07 30.3 0.1 5.8e-07 29.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|116753897|ref|YP_843015.1| - 2e-06 27.5 0.1 4.6e-06 26.3 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|116753897|ref|YP_843015.1| - 4.8e-05 23.2 0.0 8.6e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|116753897|ref|YP_843015.1| - 0.00063 19.8 0.0 0.0022 18.1 0.0 1.9 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.6 gi|116753897|ref|YP_843015.1| - 0.0044 17.5 0.1 0.0086 16.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|116753897|ref|YP_843015.1| - 0.0069 16.3 0.1 0.08 12.9 0.2 2.5 2 1 0 2 2 2 1 MarR family TFIIE_alpha PF02002.17 gi|116753897|ref|YP_843015.1| - 0.023 14.5 0.1 0.037 13.9 0.1 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_24 PF13412.6 gi|116753897|ref|YP_843015.1| - 0.034 13.7 0.6 0.068 12.8 0.6 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RNA_pol_Rpc34 PF05158.12 gi|116753897|ref|YP_843015.1| - 0.049 13.0 0.2 0.078 12.3 0.2 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_Crp_2 PF13545.6 gi|116753897|ref|YP_843015.1| - 0.058 13.4 0.3 0.11 12.5 0.3 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sulfolobus_pRN PF05584.11 gi|116753897|ref|YP_843015.1| - 0.15 12.1 1.1 0.25 11.4 1.1 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein MacB_PCD PF12704.7 gi|116753898|ref|YP_843016.1| - 5.4e-31 108.5 0.5 5.4e-31 108.5 0.5 2.3 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|116753898|ref|YP_843016.1| - 3.9e-09 36.9 8.1 3.9e-09 36.9 8.1 3.2 3 0 0 3 3 3 2 FtsX-like permease family Polysacc_synt_3 PF13440.6 gi|116753898|ref|YP_843016.1| - 4 6.6 10.9 0.33 10.1 2.2 2.8 2 1 1 3 3 3 0 Polysaccharide biosynthesis protein RTX PF02382.15 gi|116753898|ref|YP_843016.1| - 7.7 6.1 5.9 5.5 6.6 3.1 1.9 2 0 0 2 2 2 0 N-terminal domain in RTX protein ABC_tran PF00005.27 gi|116753900|ref|YP_843018.1| - 9.5e-30 103.9 0.0 1.3e-29 103.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116753900|ref|YP_843018.1| - 6.8e-09 36.0 0.1 0.0003 20.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|116753900|ref|YP_843018.1| - 1.9e-06 27.5 0.1 0.0042 16.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|116753900|ref|YP_843018.1| - 0.00022 20.9 0.2 0.00047 19.8 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|116753900|ref|YP_843018.1| - 0.0016 18.4 0.1 0.28 11.1 0.0 2.2 2 0 0 2 2 2 1 NTPase RsgA_GTPase PF03193.16 gi|116753900|ref|YP_843018.1| - 0.003 17.5 0.1 0.0053 16.7 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|116753900|ref|YP_843018.1| - 0.0038 17.5 0.1 0.048 13.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|116753900|ref|YP_843018.1| - 0.03 14.5 0.0 0.063 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|116753900|ref|YP_843018.1| - 0.034 13.9 0.0 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|116753900|ref|YP_843018.1| - 0.043 14.2 0.1 0.062 13.7 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|116753900|ref|YP_843018.1| - 0.062 13.0 0.2 3.7 7.2 0.1 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|116753900|ref|YP_843018.1| - 0.077 12.7 0.0 0.32 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|116753900|ref|YP_843018.1| - 0.12 11.6 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_23 PF13476.6 gi|116753900|ref|YP_843018.1| - 0.12 12.8 0.1 0.2 12.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|116753900|ref|YP_843018.1| - 0.14 11.3 0.0 0.26 10.4 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain KDGP_aldolase PF07071.11 gi|116753900|ref|YP_843018.1| - 0.18 11.6 0.0 0.25 11.1 0.0 1.1 1 0 0 1 1 1 0 KDGP aldolase AAA_24 PF13479.6 gi|116753900|ref|YP_843018.1| - 0.2 11.3 0.0 0.46 10.2 0.0 1.5 2 0 0 2 2 2 0 AAA domain LTD PF00932.19 gi|116753901|ref|YP_843019.1| - 6.4e-08 32.9 0.2 9.3e-08 32.4 0.2 1.2 1 0 0 1 1 1 1 Lamin Tail Domain Tad_C PF09977.9 gi|116753901|ref|YP_843019.1| - 0.00019 22.6 1.9 0.00039 21.6 1.3 1.7 1 1 1 2 2 2 1 Putative Tad-like Flp pilus-assembly LBP_BPI_CETP PF01273.25 gi|116753901|ref|YP_843019.1| - 0.1 12.2 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 LBP / BPI / CETP family, N-terminal domain Prenyltransf PF01255.19 gi|116753902|ref|YP_843020.1| - 3.6e-66 222.9 0.0 4.4e-66 222.6 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase SNN_cytoplasm PF09051.10 gi|116753902|ref|YP_843020.1| - 0.051 13.4 0.1 0.095 12.6 0.1 1.4 1 0 0 1 1 1 0 Stannin cytoplasmic NAC PF01849.18 gi|116753903|ref|YP_843021.1| - 2e-16 59.7 0.7 3.2e-16 59.1 0.7 1.3 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|116753903|ref|YP_843021.1| - 0.024 14.5 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain HOIP-UBA PF16678.5 gi|116753903|ref|YP_843021.1| - 0.039 14.0 0.1 0.056 13.5 0.1 1.3 1 1 0 1 1 1 0 HOIP UBA domain pair SMC_ScpB PF04079.16 gi|116753905|ref|YP_843023.1| - 4.1e-38 130.5 0.0 7e-38 129.8 0.0 1.3 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_20 PF12840.7 gi|116753905|ref|YP_843023.1| - 0.015 15.3 0.2 0.093 12.8 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Peptidase_M54 PF07998.11 gi|116753906|ref|YP_843024.1| - 5.1e-10 39.7 0.1 8.4e-10 39.0 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|116753906|ref|YP_843024.1| - 9.2e-06 25.6 0.0 1.3e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.6 gi|116753906|ref|YP_843024.1| - 0.00099 19.6 0.0 0.0011 19.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|116753906|ref|YP_843024.1| - 0.002 17.8 0.0 0.0024 17.5 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|116753906|ref|YP_843024.1| - 0.0058 15.9 0.3 0.0082 15.4 0.3 1.1 1 0 0 1 1 1 1 Met-zincin Reprolysin_5 PF13688.6 gi|116753906|ref|YP_843024.1| - 0.011 15.9 0.0 0.012 15.8 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_2 PF13574.6 gi|116753906|ref|YP_843024.1| - 0.057 13.3 0.0 0.067 13.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|116753906|ref|YP_843024.1| - 0.073 11.7 3.2 0.079 11.5 2.1 1.5 1 1 1 2 2 2 0 Putative peptidase family Astacin PF01400.24 gi|116753906|ref|YP_843024.1| - 0.091 12.4 0.4 0.12 11.9 0.4 1.2 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) Peptidase_M66 PF10462.9 gi|116753906|ref|YP_843024.1| - 0.18 10.7 0.1 0.23 10.4 0.1 1.1 1 0 0 1 1 1 0 Peptidase M66 ParA PF10609.9 gi|116753907|ref|YP_843025.1| - 9.1e-92 306.9 0.3 1.1e-91 306.7 0.3 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|116753907|ref|YP_843025.1| - 3.9e-13 49.6 0.0 5.8e-13 49.0 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|116753907|ref|YP_843025.1| - 1.7e-07 30.7 0.8 3.8e-06 26.3 0.3 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|116753907|ref|YP_843025.1| - 9e-07 29.0 1.0 1.1e-05 25.4 1.0 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|116753907|ref|YP_843025.1| - 7.6e-06 25.4 0.1 1.3e-05 24.6 0.1 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|116753907|ref|YP_843025.1| - 7.8e-05 22.6 0.2 0.0091 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain CLP1_P PF16575.5 gi|116753907|ref|YP_843025.1| - 0.0019 18.0 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|116753907|ref|YP_843025.1| - 0.01 15.8 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase SRP54 PF00448.22 gi|116753907|ref|YP_843025.1| - 0.013 15.1 0.1 0.029 14.0 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|116753907|ref|YP_843025.1| - 0.025 13.5 0.3 0.052 12.5 0.1 1.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB VirC1 PF07015.11 gi|116753907|ref|YP_843025.1| - 0.033 13.5 0.0 0.054 12.8 0.0 1.2 1 0 0 1 1 1 0 VirC1 protein CBP_BcsQ PF06564.12 gi|116753907|ref|YP_843025.1| - 0.088 12.3 0.1 0.63 9.5 0.1 1.9 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ Zn_Tnp_IS1595 PF12760.7 gi|116753907|ref|YP_843025.1| - 0.35 10.9 0.1 0.35 10.9 0.1 2.5 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|116753907|ref|YP_843025.1| - 0.94 9.1 2.8 5.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Topoisom_bac PF01131.20 gi|116753908|ref|YP_843026.1| - 7.5e-122 407.3 0.0 1e-121 406.9 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|116753908|ref|YP_843026.1| - 1.2e-15 57.6 0.1 3.8e-15 56.0 0.1 2.0 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|116753908|ref|YP_843026.1| - 6.4e-15 54.7 0.8 6.4e-15 54.7 0.8 2.8 3 0 0 3 3 3 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.6 gi|116753908|ref|YP_843026.1| - 1.6e-09 38.2 1.2 4.8e-09 36.7 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|116753908|ref|YP_843026.1| - 0.0065 16.7 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|116753908|ref|YP_843026.1| - 0.052 13.8 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus PmbA_TldD PF01523.16 gi|116753909|ref|YP_843027.1| - 2.4e-65 221.2 0.4 3.1e-65 220.8 0.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.13 gi|116753910|ref|YP_843028.1| - 2.3e-35 122.0 3.3 3.6e-35 121.4 3.3 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|116753910|ref|YP_843028.1| - 2.9e-29 102.2 0.0 3.8e-22 78.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|116753910|ref|YP_843028.1| - 2.1e-15 56.7 0.1 7e-09 35.4 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|116753910|ref|YP_843028.1| - 2.3e-14 53.5 0.0 3.1e-08 33.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.6 gi|116753910|ref|YP_843028.1| - 1.1e-09 38.1 0.7 2.2e-09 37.2 0.7 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.14 gi|116753910|ref|YP_843028.1| - 3e-09 37.0 0.0 0.0047 16.9 0.0 2.9 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|116753910|ref|YP_843028.1| - 2.3e-07 30.1 0.2 0.0049 16.0 0.0 2.7 3 0 0 3 3 3 2 MCM P-loop domain AAA_22 PF13401.6 gi|116753910|ref|YP_843028.1| - 2.2e-05 24.7 0.0 0.002 18.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|116753910|ref|YP_843028.1| - 2.9e-05 24.5 0.0 0.22 11.9 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|116753910|ref|YP_843028.1| - 0.00018 21.3 0.0 0.054 13.2 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activ_2 PF14532.6 gi|116753910|ref|YP_843028.1| - 0.00037 20.6 0.0 0.37 10.9 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.6 gi|116753910|ref|YP_843028.1| - 0.00051 20.4 0.1 0.0058 17.0 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|116753910|ref|YP_843028.1| - 0.00076 19.0 0.0 0.0046 16.5 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region TIP49 PF06068.13 gi|116753910|ref|YP_843028.1| - 0.00084 18.6 0.0 1.4 8.0 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_3 PF07726.11 gi|116753910|ref|YP_843028.1| - 0.0042 16.9 0.1 4.2 7.2 0.0 3.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|116753910|ref|YP_843028.1| - 0.0069 16.8 0.0 0.48 10.8 0.0 2.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|116753910|ref|YP_843028.1| - 0.015 15.0 0.0 0.084 12.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain Birna_VP4 PF01768.16 gi|116753910|ref|YP_843028.1| - 0.045 13.6 2.9 0.17 11.7 0.3 2.8 3 0 0 3 3 3 0 Birnavirus VP4 protein AAA_18 PF13238.6 gi|116753910|ref|YP_843028.1| - 0.052 14.1 0.0 0.13 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|116753910|ref|YP_843028.1| - 0.074 12.2 0.0 0.21 10.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|116753910|ref|YP_843028.1| - 0.11 13.0 0.0 0.32 11.5 0.0 1.8 1 0 0 1 1 1 0 ABC transporter DUF4118 PF13493.6 gi|116753910|ref|YP_843028.1| - 0.12 12.2 0.7 0.3 10.9 0.7 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) MMR_HSR1 PF01926.23 gi|116753910|ref|YP_843028.1| - 0.13 12.4 0.0 11 6.2 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase AsnC_trans_reg PF01037.21 gi|116753911|ref|YP_843029.1| - 1.3e-11 44.2 0.2 1.6e-11 44.0 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|116753911|ref|YP_843029.1| - 0.00029 20.7 0.1 0.00031 20.7 0.1 1.1 1 0 0 1 1 1 1 GYD domain NapD PF03927.13 gi|116753911|ref|YP_843029.1| - 0.00063 19.7 0.5 0.00085 19.3 0.5 1.2 1 0 0 1 1 1 1 NapD protein ACT_4 PF13291.6 gi|116753911|ref|YP_843029.1| - 0.0017 18.9 0.2 0.079 13.6 0.0 2.1 2 0 0 2 2 2 1 ACT domain Topo-VIb_trans PF09239.11 gi|116753912|ref|YP_843030.1| - 2.8e-63 212.5 0.0 4.6e-63 211.8 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|116753912|ref|YP_843030.1| - 2.5e-32 111.4 0.0 9.4e-32 109.6 0.0 1.9 2 0 0 2 2 2 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|116753912|ref|YP_843030.1| - 4.1e-10 40.2 0.0 8.2e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|116753912|ref|YP_843030.1| - 1.2e-06 28.3 0.0 3.1e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|116753912|ref|YP_843030.1| - 0.0016 17.3 0.0 0.0027 16.5 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) H2TH PF06831.14 gi|116753912|ref|YP_843030.1| - 0.004 17.1 0.0 0.0097 15.9 0.0 1.6 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain MAF_flag10 PF01973.18 gi|116753912|ref|YP_843030.1| - 0.031 14.0 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF115 TP6A_N PF04406.14 gi|116753913|ref|YP_843031.1| - 5.4e-17 61.5 0.6 1.2e-16 60.4 0.1 1.9 2 0 0 2 2 2 1 Type IIB DNA topoisomerase CBS PF00571.28 gi|116753914|ref|YP_843032.1| - 2.4e-37 127.2 13.3 2.2e-14 53.6 0.9 4.2 4 0 0 4 4 4 4 CBS domain NS3 PF17530.2 gi|116753914|ref|YP_843032.1| - 0.021 14.4 0.1 0.043 13.4 0.1 1.4 2 0 0 2 2 2 0 Non-structural protein NS3 Clr5 PF14420.6 gi|116753914|ref|YP_843032.1| - 0.068 13.4 0.2 0.26 11.6 0.2 2.1 2 0 0 2 2 2 0 Clr5 domain Usp PF00582.26 gi|116753915|ref|YP_843033.1| - 7e-35 120.6 0.5 7.9e-35 120.4 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family SfsA_N PF17746.1 gi|116753915|ref|YP_843033.1| - 0.15 12.3 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 SfsA N-terminal OB domain Amidohydro_1 PF01979.20 gi|116753916|ref|YP_843034.1| - 3.4e-33 115.4 0.1 2.9e-20 72.9 0.1 3.0 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|116753916|ref|YP_843034.1| - 9.2e-12 45.2 0.2 5.7e-10 39.3 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|116753916|ref|YP_843034.1| - 5.5e-05 22.7 0.0 8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase RibD_C PF01872.17 gi|116753917|ref|YP_843035.1| - 2.2e-53 181.1 0.0 2.5e-53 180.9 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF169 PF02596.15 gi|116753918|ref|YP_843036.1| - 1.6e-54 185.0 0.0 2e-54 184.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 LTD PF00932.19 gi|116753919|ref|YP_843037.1| - 4e-23 81.9 0.6 4.9e-23 81.6 0.6 1.1 1 0 0 1 1 1 1 Lamin Tail Domain PUA PF01472.20 gi|116753920|ref|YP_843038.1| - 5.7e-09 35.8 0.2 6.4e-09 35.7 0.2 1.1 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|116753920|ref|YP_843038.1| - 0.0013 18.9 0.0 0.0015 18.8 0.0 1.1 1 0 0 1 1 1 1 UPF0113 PUA domain SNase PF00565.17 gi|116753921|ref|YP_843039.1| - 9.6e-09 35.7 0.0 1.4e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Ada_Zn_binding PF02805.16 gi|116753921|ref|YP_843039.1| - 9.4e-05 22.4 1.2 0.00017 21.5 1.2 1.4 1 0 0 1 1 1 1 Metal binding domain of Ada Methyltrn_RNA_2 PF04013.12 gi|116753922|ref|YP_843040.1| - 3.6e-59 199.8 0.0 4e-59 199.7 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Flavodoxin_5 PF12724.7 gi|116753923|ref|YP_843041.1| - 2.3e-15 57.1 0.0 3.2e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Putative_PNPOx PF01243.20 gi|116753923|ref|YP_843041.1| - 1.3e-07 31.7 0.0 2.3e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Flavodoxin_3 PF12641.7 gi|116753923|ref|YP_843041.1| - 5.5e-07 29.4 0.0 7.9e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Pyridox_ox_2 PF12900.7 gi|116753923|ref|YP_843041.1| - 0.00031 20.7 0.0 0.00053 20.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FMN_red PF03358.15 gi|116753923|ref|YP_843041.1| - 0.018 14.8 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.25 gi|116753923|ref|YP_843041.1| - 0.036 14.3 0.0 0.066 13.4 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin DUF1743 PF08489.11 gi|116753924|ref|YP_843042.1| - 4.9e-41 139.4 0.0 8.6e-41 138.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|116753924|ref|YP_843042.1| - 0.045 13.7 0.0 0.091 12.8 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain HTH_20 PF12840.7 gi|116753925|ref|YP_843043.1| - 3e-15 56.0 2.1 1.2e-11 44.5 0.0 2.7 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|116753925|ref|YP_843043.1| - 5e-15 55.1 0.0 1.3e-08 34.6 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 gi|116753925|ref|YP_843043.1| - 5.1e-11 42.5 1.2 7.2e-06 26.0 0.0 2.6 2 1 0 2 2 2 2 DprA winged helix domain MarR_2 PF12802.7 gi|116753925|ref|YP_843043.1| - 1.9e-10 40.5 1.2 0.00058 19.7 0.1 2.7 2 2 0 2 2 2 2 MarR family TrmB PF01978.19 gi|116753925|ref|YP_843043.1| - 2.6e-09 36.8 0.0 8.8e-05 22.3 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|116753925|ref|YP_843043.1| - 5.9e-09 35.4 0.4 0.01 15.3 0.0 3.3 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|116753925|ref|YP_843043.1| - 5e-07 29.8 0.0 0.00041 20.5 0.0 2.3 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|116753925|ref|YP_843043.1| - 1.5e-06 27.8 0.2 0.00026 20.6 0.4 2.7 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|116753925|ref|YP_843043.1| - 2.7e-06 27.6 0.0 0.022 15.1 0.0 2.6 2 0 0 2 2 2 2 Transcriptional regulator HTH_27 PF13463.6 gi|116753925|ref|YP_843043.1| - 1.9e-05 25.1 0.0 0.31 11.6 0.0 2.4 2 0 0 2 2 2 2 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|116753925|ref|YP_843043.1| - 3.5e-05 23.6 0.3 0.002 18.0 0.0 2.3 2 0 0 2 2 2 1 TFIIE alpha subunit MarR PF01047.22 gi|116753925|ref|YP_843043.1| - 4e-05 23.5 0.2 0.5 10.3 0.0 2.9 3 0 0 3 3 3 2 MarR family HTH_Crp_2 PF13545.6 gi|116753925|ref|YP_843043.1| - 7.8e-05 22.6 0.3 0.2 11.6 0.1 2.6 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|116753925|ref|YP_843043.1| - 9.7e-05 22.1 0.1 0.94 9.3 0.0 3.1 3 0 0 3 3 3 2 LexA DNA binding domain DUF2250 PF10007.9 gi|116753925|ref|YP_843043.1| - 0.0018 18.3 0.0 3.1 8.0 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.12 gi|116753925|ref|YP_843043.1| - 0.0031 17.4 0.0 0.61 10.1 0.0 2.7 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|116753925|ref|YP_843043.1| - 0.0046 16.7 1.9 0.047 13.5 0.1 2.8 3 1 0 3 3 3 1 IclR helix-turn-helix domain PadR PF03551.14 gi|116753925|ref|YP_843043.1| - 0.015 15.3 0.0 0.88 9.6 0.0 3.0 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family Hemerythrin PF01814.23 gi|116753925|ref|YP_843043.1| - 0.021 15.5 2.2 0.038 14.6 2.2 1.4 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain Cdc6_C PF09079.11 gi|116753925|ref|YP_843043.1| - 0.041 13.8 0.2 4.7 7.3 0.0 3.0 3 1 1 4 4 4 0 CDC6, C terminal winged helix domain HTH_47 PF16221.5 gi|116753925|ref|YP_843043.1| - 0.098 12.2 0.1 16 5.1 0.0 2.5 2 0 0 2 2 2 0 winged helix-turn-helix FeoC PF09012.10 gi|116753925|ref|YP_843043.1| - 0.12 12.5 0.1 22 5.2 0.0 2.7 3 0 0 3 3 3 0 FeoC like transcriptional regulator DUF4055 PF13264.6 gi|116753925|ref|YP_843043.1| - 0.13 12.4 0.6 0.21 11.8 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4055) IF2_N PF04760.15 gi|116753925|ref|YP_843043.1| - 0.13 12.1 0.0 1.7 8.5 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region ArsR PF09824.9 gi|116753925|ref|YP_843043.1| - 0.16 11.6 0.0 4.1 7.0 0.0 2.6 2 1 1 3 3 3 0 ArsR transcriptional regulator HTH_9 PF08221.11 gi|116753925|ref|YP_843043.1| - 0.16 12.1 0.0 0.55 10.4 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain AAA PF00004.29 gi|116753926|ref|YP_843044.1| - 4.6e-97 321.5 0.0 1.9e-47 161.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|116753926|ref|YP_843044.1| - 6.1e-33 112.4 0.2 2e-16 59.5 0.0 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|116753926|ref|YP_843044.1| - 2.5e-27 94.9 0.3 1.5e-26 92.3 0.2 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|116753926|ref|YP_843044.1| - 5.1e-16 58.8 0.0 1.6e-08 34.4 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|116753926|ref|YP_843044.1| - 7.4e-14 51.3 0.2 1.6e-13 50.2 0.2 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|116753926|ref|YP_843044.1| - 9.5e-14 52.1 5.0 4.6e-06 27.1 0.5 3.7 3 2 0 3 3 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|116753926|ref|YP_843044.1| - 2.9e-13 50.3 0.0 2.6e-05 24.4 0.0 2.9 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|116753926|ref|YP_843044.1| - 3e-12 46.4 0.0 2.7e-05 23.5 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_5 PF07728.14 gi|116753926|ref|YP_843044.1| - 3.1e-12 46.7 0.4 7.5e-06 26.0 0.0 3.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|116753926|ref|YP_843044.1| - 3.9e-11 43.3 0.0 2.3e-05 24.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|116753926|ref|YP_843044.1| - 7e-11 42.5 1.3 0.017 15.4 0.1 3.9 2 2 1 3 3 3 3 AAA domain AAA_14 PF13173.6 gi|116753926|ref|YP_843044.1| - 2.7e-08 33.9 0.0 0.011 15.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|116753926|ref|YP_843044.1| - 9.4e-08 31.9 0.2 0.054 13.2 0.1 3.8 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_18 PF13238.6 gi|116753926|ref|YP_843044.1| - 4.7e-07 30.4 0.0 0.02 15.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|116753926|ref|YP_843044.1| - 5.5e-07 29.2 1.0 0.013 14.9 0.1 2.7 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|116753926|ref|YP_843044.1| - 1.2e-06 28.9 0.0 0.041 14.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|116753926|ref|YP_843044.1| - 2.8e-06 27.2 0.0 0.067 12.9 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_3 PF07726.11 gi|116753926|ref|YP_843044.1| - 3.3e-06 27.0 0.0 0.065 13.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|116753926|ref|YP_843044.1| - 7.1e-06 26.0 0.0 0.15 12.1 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|116753926|ref|YP_843044.1| - 8.2e-06 25.5 5.0 0.61 9.6 0.0 4.2 2 2 0 4 4 4 1 AAA domain AAA_7 PF12775.7 gi|116753926|ref|YP_843044.1| - 8.7e-06 25.4 0.0 0.077 12.5 0.0 2.6 2 0 0 2 2 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|116753926|ref|YP_843044.1| - 2.7e-05 24.5 0.0 0.33 11.4 0.0 2.6 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.12 gi|116753926|ref|YP_843044.1| - 4.9e-05 23.3 0.7 0.95 9.4 0.0 3.9 4 0 0 4 4 4 2 NACHT domain ATPase PF06745.13 gi|116753926|ref|YP_843044.1| - 7.4e-05 22.2 0.5 0.87 8.9 0.0 3.2 2 1 1 3 3 3 2 KaiC AAA_24 PF13479.6 gi|116753926|ref|YP_843044.1| - 8.6e-05 22.3 0.0 0.16 11.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|116753926|ref|YP_843044.1| - 0.00014 21.7 0.0 0.25 11.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|116753926|ref|YP_843044.1| - 0.00026 20.5 0.4 0.81 9.1 0.1 2.4 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.17 gi|116753926|ref|YP_843044.1| - 0.00027 20.1 0.1 0.26 10.3 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.6 gi|116753926|ref|YP_843044.1| - 0.00029 20.6 0.8 0.78 9.4 0.1 2.5 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|116753926|ref|YP_843044.1| - 0.00036 19.9 0.5 0.8 8.9 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin Sigma54_activ_2 PF14532.6 gi|116753926|ref|YP_843044.1| - 0.00047 20.3 0.0 1.6 8.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_17 PF13207.6 gi|116753926|ref|YP_843044.1| - 0.00053 20.4 0.0 0.36 11.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|116753926|ref|YP_843044.1| - 0.00081 18.7 0.0 0.45 9.7 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.27 gi|116753926|ref|YP_843044.1| - 0.00082 19.9 0.0 0.88 10.1 0.0 2.7 2 0 0 2 2 2 1 ABC transporter AAA_19 PF13245.6 gi|116753926|ref|YP_843044.1| - 0.00085 19.7 3.3 1.4 9.3 0.1 3.3 2 1 1 3 3 3 2 AAA domain NB-ARC PF00931.22 gi|116753926|ref|YP_843044.1| - 0.0013 18.0 0.0 0.91 8.6 0.0 2.8 3 0 0 3 3 3 1 NB-ARC domain TniB PF05621.11 gi|116753926|ref|YP_843044.1| - 0.0015 18.0 0.0 2.9 7.3 0.0 3.8 4 1 1 5 5 4 1 Bacterial TniB protein Vps4_C PF09336.10 gi|116753926|ref|YP_843044.1| - 0.0018 18.2 0.1 1.3 9.1 0.1 2.6 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain DUF815 PF05673.13 gi|116753926|ref|YP_843044.1| - 0.0021 17.3 0.0 0.79 8.8 0.0 2.6 3 0 0 3 3 2 1 Protein of unknown function (DUF815) Cytidylate_kin PF02224.18 gi|116753926|ref|YP_843044.1| - 0.0035 17.1 0.1 2.4 7.8 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase CPT PF07931.12 gi|116753926|ref|YP_843044.1| - 0.0044 16.9 0.0 0.5 10.2 0.0 2.6 2 1 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein Cytidylate_kin2 PF13189.6 gi|116753926|ref|YP_843044.1| - 0.0094 16.1 0.0 0.28 11.3 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase-like family Zot PF05707.12 gi|116753926|ref|YP_843044.1| - 0.012 15.3 0.1 2 8.0 0.0 3.1 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) AFG1_ATPase PF03969.16 gi|116753926|ref|YP_843044.1| - 0.021 13.7 0.0 6.2 5.6 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase ResIII PF04851.15 gi|116753926|ref|YP_843044.1| - 0.022 14.7 0.0 5.2 7.0 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ATPase_2 PF01637.18 gi|116753926|ref|YP_843044.1| - 0.024 14.5 0.2 30 4.4 0.0 3.6 2 2 1 3 3 3 0 ATPase domain predominantly from Archaea Viral_helicase1 PF01443.18 gi|116753926|ref|YP_843044.1| - 0.03 14.0 0.0 7.7 6.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase IPT PF01745.16 gi|116753926|ref|YP_843044.1| - 0.033 13.6 0.3 1.3 8.4 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase Rad17 PF03215.15 gi|116753926|ref|YP_843044.1| - 0.039 13.9 0.0 4.7 7.1 0.0 3.0 2 1 1 3 3 3 0 Rad17 P-loop domain Guanylate_kin PF00625.21 gi|116753926|ref|YP_843044.1| - 0.047 13.4 0.3 52 3.4 0.0 3.7 2 2 2 4 4 4 0 Guanylate kinase SKI PF01202.22 gi|116753926|ref|YP_843044.1| - 0.072 13.2 0.0 6 7.0 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase AAA_29 PF13555.6 gi|116753926|ref|YP_843044.1| - 0.1 12.4 0.0 19 5.1 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Torsin PF06309.11 gi|116753926|ref|YP_843044.1| - 0.22 11.6 0.0 7.9 6.6 0.0 2.4 2 0 0 2 2 2 0 Torsin NTPase_1 PF03266.15 gi|116753926|ref|YP_843044.1| - 0.25 11.2 2.5 29 4.5 0.0 3.7 3 1 1 4 4 3 0 NTPase Hydin_ADK PF17213.3 gi|116753926|ref|YP_843044.1| - 0.46 10.7 1.1 13 6.0 0.1 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain RETICULATA-like PF11891.8 gi|116753927|ref|YP_843045.1| - 0.0085 15.9 0.1 0.014 15.2 0.1 1.3 1 0 0 1 1 1 1 Protein RETICULATA-related Vac14_Fab1_bd PF12755.7 gi|116753927|ref|YP_843045.1| - 0.0087 16.6 0.4 0.0094 16.5 0.4 1.1 1 0 0 1 1 1 1 Vacuolar 14 Fab1-binding region DeoC PF01791.9 gi|116753930|ref|YP_843048.1| - 8.9e-63 212.0 0.0 1e-62 211.8 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.14 gi|116753930|ref|YP_843048.1| - 0.00059 19.2 0.6 0.00059 19.2 0.6 1.9 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG YbjQ_1 PF01906.17 gi|116753930|ref|YP_843048.1| - 0.16 12.6 1.2 3.3 8.4 0.0 2.8 3 0 0 3 3 3 0 Putative heavy-metal-binding NMO PF03060.15 gi|116753930|ref|YP_843048.1| - 1.7 7.9 5.4 0.85 8.9 2.8 1.8 1 1 1 2 2 2 0 Nitronate monooxygenase Methyltransf_21 PF05050.12 gi|116753931|ref|YP_843049.1| - 9.8e-07 28.9 0.0 4e-06 27.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|116753931|ref|YP_843049.1| - 0.0014 18.4 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.11 gi|116753931|ref|YP_843049.1| - 0.0044 16.4 0.0 0.0097 15.2 0.0 1.5 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein PCMT PF01135.19 gi|116753931|ref|YP_843049.1| - 0.0061 16.3 0.0 0.009 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.17 gi|116753931|ref|YP_843049.1| - 0.061 12.5 0.0 0.085 12.0 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase AcetylCoA_hyd_C PF13336.6 gi|116753932|ref|YP_843050.1| - 4.1e-64 215.2 0.0 6.7e-64 214.5 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 gi|116753932|ref|YP_843050.1| - 3.7e-50 170.7 0.0 7.1e-50 169.7 0.0 1.5 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_3 PF13302.7 gi|116753932|ref|YP_843050.1| - 2.2e-10 41.4 0.0 4.5e-10 40.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|116753932|ref|YP_843050.1| - 4.1e-10 39.9 0.1 9.5e-10 38.7 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|116753932|ref|YP_843050.1| - 0.00017 21.9 0.2 0.00041 20.7 0.2 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|116753932|ref|YP_843050.1| - 0.00021 21.5 0.1 0.00043 20.5 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Mal_decarbox_Al PF16957.5 gi|116753932|ref|YP_843050.1| - 0.00043 18.8 0.3 0.039 12.3 0.1 2.1 2 0 0 2 2 2 2 Malonate decarboxylase, alpha subunit, transporter Acetyltransf_10 PF13673.7 gi|116753932|ref|YP_843050.1| - 0.021 14.7 0.1 0.051 13.5 0.1 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|116753932|ref|YP_843050.1| - 0.035 14.1 0.1 0.088 12.8 0.1 1.6 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.6 gi|116753932|ref|YP_843050.1| - 0.054 13.6 0.1 0.38 10.9 0.1 2.2 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase PhoU PF01895.19 gi|116753933|ref|YP_843051.1| - 8.9e-26 90.2 10.3 7.5e-18 64.8 3.2 2.3 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|116753933|ref|YP_843051.1| - 0.00033 20.5 0.1 0.00083 19.2 0.1 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PhoU PF01895.19 gi|116753934|ref|YP_843052.1| - 4.6e-41 139.2 9.5 1.5e-20 73.4 1.5 2.1 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.27 gi|116753935|ref|YP_843053.1| - 1.9e-31 109.4 0.0 3.1e-31 108.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116753935|ref|YP_843053.1| - 7.4e-15 55.5 0.0 1.2e-07 31.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|116753935|ref|YP_843053.1| - 5.7e-07 29.2 0.1 0.00015 21.3 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|116753935|ref|YP_843053.1| - 0.00048 20.7 0.1 0.00086 19.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|116753935|ref|YP_843053.1| - 0.00057 19.8 0.0 0.0012 18.8 0.0 1.5 2 0 0 2 2 1 1 RsgA GTPase Rad17 PF03215.15 gi|116753935|ref|YP_843053.1| - 0.0014 18.6 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|116753935|ref|YP_843053.1| - 0.0019 18.0 0.0 0.0021 17.8 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|116753935|ref|YP_843053.1| - 0.002 17.9 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|116753935|ref|YP_843053.1| - 0.0022 18.4 0.0 0.0053 17.2 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|116753935|ref|YP_843053.1| - 0.0027 18.0 0.1 0.0082 16.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|116753935|ref|YP_843053.1| - 0.036 14.2 0.0 0.056 13.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|116753935|ref|YP_843053.1| - 0.037 13.6 0.0 0.097 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|116753935|ref|YP_843053.1| - 0.039 14.4 0.0 0.76 10.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|116753935|ref|YP_843053.1| - 0.052 12.9 0.4 0.091 12.1 0.1 1.5 2 0 0 2 2 2 0 KaiC AAA_18 PF13238.6 gi|116753935|ref|YP_843053.1| - 0.054 14.1 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|116753935|ref|YP_843053.1| - 0.1 12.8 0.2 3.6 7.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|116753935|ref|YP_843053.1| - 0.13 12.0 0.0 1.1 9.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|116753935|ref|YP_843053.1| - 0.16 10.7 0.1 4.5 5.9 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 gi|116753935|ref|YP_843053.1| - 0.18 11.5 0.0 9.3 5.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein tRNA-synt_2 PF00152.20 gi|116753936|ref|YP_843054.1| - 3e-88 295.9 0.0 3.6e-88 295.7 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|116753936|ref|YP_843054.1| - 9.6e-11 41.5 0.1 1.6e-10 40.8 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|116753936|ref|YP_843054.1| - 0.023 14.9 0.0 0.053 13.7 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|116753936|ref|YP_843054.1| - 0.026 14.0 0.2 2 7.9 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) MAF_flag10 PF01973.18 gi|116753937|ref|YP_843055.1| - 6.1e-30 104.2 0.0 7.6e-30 103.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|116753937|ref|YP_843055.1| - 0.003 17.6 0.0 0.0059 16.6 0.0 1.5 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain eRF1_1 PF03463.15 gi|116753939|ref|YP_843057.1| - 3.9e-29 101.3 0.0 5.9e-29 100.7 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|116753939|ref|YP_843057.1| - 1.3e-21 77.2 0.1 4.8e-21 75.4 0.1 2.0 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|116753939|ref|YP_843057.1| - 1.1e-08 35.5 0.0 2.5e-08 34.3 0.0 1.6 1 1 0 1 1 1 1 eRF1 domain 2 Rubrerythrin PF02915.17 gi|116753940|ref|YP_843058.1| - 3.4e-07 30.7 2.2 5.7e-07 30.0 2.2 1.4 1 1 0 1 1 1 1 Rubrerythrin Mn_catalase PF05067.12 gi|116753940|ref|YP_843058.1| - 0.0023 17.0 0.2 0.0026 16.8 0.2 1.0 1 0 0 1 1 1 1 Manganese containing catalase DUF2383 PF09537.10 gi|116753940|ref|YP_843058.1| - 0.0056 17.0 0.8 0.01 16.2 0.3 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|116753940|ref|YP_843058.1| - 0.0059 16.5 0.6 0.0059 16.5 0.6 1.6 1 1 0 1 1 1 1 Ferritin-like domain Hydrolase PF00702.26 gi|116753941|ref|YP_843059.1| - 9.5e-15 55.4 0.0 2.9e-14 53.9 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|116753941|ref|YP_843059.1| - 1.4e-14 54.5 0.0 4.1e-14 53.1 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|116753941|ref|YP_843059.1| - 3.4e-05 24.3 0.1 6e-05 23.5 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|116753941|ref|YP_843059.1| - 0.0011 18.8 0.0 0.16 11.8 0.0 2.2 2 0 0 2 2 2 2 Acid Phosphatase Hydrolase_6 PF13344.6 gi|116753941|ref|YP_843059.1| - 0.0087 16.2 0.0 0.05 13.7 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|116753941|ref|YP_843059.1| - 0.012 15.0 0.0 0.04 13.3 0.0 1.7 2 0 0 2 2 2 0 Putative Phosphatase PNK3P PF08645.11 gi|116753941|ref|YP_843059.1| - 0.038 13.7 0.0 2.8 7.6 0.0 2.1 2 0 0 2 2 2 0 Polynucleotide kinase 3 phosphatase OMPdecase PF00215.24 gi|116753942|ref|YP_843060.1| - 1.3e-36 126.4 0.0 1.6e-36 126.0 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family HATPase_c PF02518.26 gi|116753943|ref|YP_843061.1| - 3.5e-26 91.9 0.0 6.1e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|116753943|ref|YP_843061.1| - 4e-09 36.4 0.1 4e-09 36.4 0.1 3.0 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|116753943|ref|YP_843061.1| - 1.9e-08 34.3 0.1 2.5e-07 30.7 0.0 2.9 3 1 0 3 3 3 1 PAS fold PAS_4 PF08448.10 gi|116753943|ref|YP_843061.1| - 8.7e-08 32.4 0.0 2e-07 31.2 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|116753943|ref|YP_843061.1| - 2.8e-06 27.5 0.0 1.1e-05 25.7 0.0 2.1 2 0 0 2 2 1 1 PAS domain PAS_8 PF13188.7 gi|116753943|ref|YP_843061.1| - 6.5e-05 22.9 0.0 0.00023 21.1 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.6 gi|116753943|ref|YP_843061.1| - 0.00065 20.3 0.0 0.0038 17.8 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|116753943|ref|YP_843061.1| - 0.0016 18.3 0.0 0.0031 17.4 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|116753943|ref|YP_843061.1| - 0.0059 16.4 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|116753943|ref|YP_843061.1| - 0.026 14.7 0.0 1.1 9.4 0.0 2.5 2 0 0 2 2 2 0 PAS fold Macoilin PF09726.9 gi|116753943|ref|YP_843061.1| - 0.45 9.0 4.2 1.1 7.8 0.4 2.0 2 0 0 2 2 2 0 Macoilin family CREPT PF16566.5 gi|116753943|ref|YP_843061.1| - 4 7.6 5.9 27 4.9 0.3 2.3 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Neurochondrin PF05536.11 gi|116753944|ref|YP_843062.1| - 0.1 11.0 0.0 0.13 10.6 0.0 1.1 1 0 0 1 1 1 0 Neurochondrin SecE PF00584.20 gi|116753945|ref|YP_843063.1| - 5.9e-05 22.9 0.1 7.5e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex AMP-binding_C_2 PF14535.6 gi|116753946|ref|YP_843064.1| - 5.7e-30 103.5 0.1 2.2e-29 101.6 0.3 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|116753946|ref|YP_843064.1| - 3.9e-19 68.5 0.1 4.4e-18 65.1 0.1 2.0 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|116753946|ref|YP_843064.1| - 0.019 13.8 0.0 0.97 8.2 0.0 2.4 2 0 0 2 2 2 0 GH3 auxin-responsive promoter Gln-synt_C PF00120.24 gi|116753947|ref|YP_843065.1| - 5.8e-133 443.1 0.0 7e-133 442.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|116753947|ref|YP_843065.1| - 1.5e-29 101.5 0.0 4.5e-29 100.0 0.0 1.8 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|116753947|ref|YP_843065.1| - 0.00026 20.8 0.0 0.0032 17.3 0.0 2.3 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain CRISPR_Cas2 PF09827.9 gi|116753948|ref|YP_843066.1| - 1e-22 80.1 0.2 1.2e-22 79.9 0.2 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 AHD PF17793.1 gi|116753948|ref|YP_843066.1| - 0.14 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 ANC1 homology domain (AHD) Cas_Cas4 PF01930.17 gi|116753949|ref|YP_843067.1| - 1.4e-15 57.8 1.7 1.6e-15 57.6 1.7 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|116753949|ref|YP_843067.1| - 1.8e-10 41.2 5.0 6.9e-10 39.3 3.0 1.9 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_TM1802 PF09484.10 gi|116753950|ref|YP_843068.1| - 8.6e-178 592.9 11.1 9.7e-178 592.7 11.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein TM1802 (cas_TM1802) FliT PF05400.13 gi|116753950|ref|YP_843068.1| - 0.098 13.5 0.1 4.3 8.2 0.0 2.5 2 0 0 2 2 2 0 Flagellar protein FliT K1377 PF15352.6 gi|116753950|ref|YP_843068.1| - 0.45 8.7 1.5 0.64 8.2 1.5 1.1 1 0 0 1 1 1 0 Susceptibility to monomelic amyotrophy Cas_Cas7 PF05107.12 gi|116753951|ref|YP_843069.1| - 6.2e-58 196.3 0.0 7.4e-58 196.1 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cas7 Cas_Cas5d PF09704.10 gi|116753952|ref|YP_843070.1| - 8.9e-09 35.5 0.0 1.5e-08 34.8 0.0 1.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) ResIII PF04851.15 gi|116753953|ref|YP_843071.1| - 7.4e-09 35.8 0.0 1.4e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|116753953|ref|YP_843071.1| - 2.8e-07 30.5 0.0 1e-06 28.6 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase HD_6 PF18019.1 gi|116753953|ref|YP_843071.1| - 6e-07 29.8 0.0 1.1e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 HD domain Helicase_C PF00271.31 gi|116753953|ref|YP_843071.1| - 6.8e-05 23.2 0.2 0.00026 21.3 0.2 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HD PF01966.22 gi|116753953|ref|YP_843071.1| - 0.0026 18.0 0.4 0.0074 16.5 0.2 1.9 2 0 0 2 2 2 1 HD domain PhoH PF02562.16 gi|116753953|ref|YP_843071.1| - 0.0075 15.7 0.0 0.089 12.2 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein SNF2_N PF00176.23 gi|116753953|ref|YP_843071.1| - 0.2 10.3 0.2 0.45 9.2 0.2 1.5 1 1 0 1 1 1 0 SNF2 family N-terminal domain Cas6b_C PF17262.2 gi|116753954|ref|YP_843072.1| - 5.6e-42 142.5 0.0 8.7e-42 141.8 0.0 1.3 1 0 0 1 1 1 1 Cas6b C-terminal domain Cas6b_N PF17955.1 gi|116753954|ref|YP_843072.1| - 3e-33 114.0 0.0 4.6e-33 113.4 0.0 1.3 1 0 0 1 1 1 1 Cas6b N-terminal domain Cas_csx3 PF09620.10 gi|116753955|ref|YP_843073.1| - 5.1e-25 87.2 0.3 5.8e-25 87.0 0.3 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_csx3) Phage_Mu_Gp45 PF06890.12 gi|116753955|ref|YP_843073.1| - 0.17 11.6 0.1 0.21 11.3 0.1 1.2 1 0 0 1 1 1 0 Bacteriophage Mu Gp45 protein DUF1887 PF09002.11 gi|116753956|ref|YP_843074.1| - 4.7e-135 450.2 0.0 5.4e-135 450.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) Cas_Cas02710 PF09670.10 gi|116753956|ref|YP_843074.1| - 1e-06 27.8 0.0 1.8e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) RAMPs PF03787.15 gi|116753957|ref|YP_843075.1| - 9.1e-13 48.7 0.3 1.7e-11 44.5 0.3 2.7 2 1 0 2 2 2 1 RAMP superfamily ATPase PF06745.13 gi|116753957|ref|YP_843075.1| - 0.037 13.4 0.0 0.06 12.7 0.0 1.3 1 0 0 1 1 1 0 KaiC HK97-gp10_like PF04883.12 gi|116753957|ref|YP_843075.1| - 0.13 13.3 0.2 17 6.5 0.0 2.7 3 0 0 3 3 3 0 Bacteriophage HK97-gp10, putative tail-component Cas_Cmr5 PF09701.10 gi|116753958|ref|YP_843076.1| - 2.4e-33 115.0 1.1 2.7e-33 114.8 1.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) PDCD7 PF16021.5 gi|116753958|ref|YP_843076.1| - 0.0025 17.0 0.1 0.0036 16.5 0.1 1.3 1 0 0 1 1 1 1 Programmed cell death protein 7 RAMPs PF03787.15 gi|116753959|ref|YP_843077.1| - 1.1e-21 77.9 0.0 1.4e-21 77.5 0.0 1.1 1 0 0 1 1 1 1 RAMP superfamily Cas_Cmr3 PF09700.10 gi|116753960|ref|YP_843078.1| - 2.2e-88 297.2 0.0 2.5e-88 297.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr3) DUF3692 PF12469.8 gi|116753961|ref|YP_843079.1| - 2.5e-20 72.8 0.0 5.6e-20 71.6 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated protein mCpol PF18182.1 gi|116753961|ref|YP_843079.1| - 4e-05 23.9 0.1 0.00017 21.9 0.0 2.1 2 1 0 2 2 2 1 minimal CRISPR polymerase domain RAMPs PF03787.15 gi|116753962|ref|YP_843080.1| - 7.9e-14 52.2 0.4 6.5e-13 49.2 0.4 2.3 1 1 0 1 1 1 1 RAMP superfamily Cas_DxTHG PF09455.10 gi|116753963|ref|YP_843081.1| - 7.6e-56 190.2 0.0 9e-56 190.0 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family DUF1887 PF09002.11 gi|116753963|ref|YP_843081.1| - 0.0066 15.2 0.0 0.64 8.6 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1887) HEPN_Apea PF18739.1 gi|116753963|ref|YP_843081.1| - 0.015 15.7 0.4 1.4 9.4 0.2 2.4 2 0 0 2 2 2 0 Apea-like HEPN Cas_Cas02710 PF09670.10 gi|116753963|ref|YP_843081.1| - 0.13 11.0 0.0 0.35 9.6 0.0 1.6 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Cas02710) DDE_Tnp_1_5 PF13737.6 gi|116753964|ref|YP_843082.1| - 8.2e-33 113.1 0.0 3.2e-31 107.9 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|116753964|ref|YP_843082.1| - 9e-21 74.5 0.1 1.6e-20 73.7 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain Hydrolase_6 PF13344.6 gi|116753965|ref|YP_843083.1| - 2.2e-21 75.8 0.0 4.8e-21 74.8 0.0 1.6 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|116753965|ref|YP_843083.1| - 7.5e-21 74.0 0.3 4.6e-20 71.5 0.0 2.2 2 1 0 2 2 2 1 HAD-hyrolase-like HAD_2 PF13419.6 gi|116753965|ref|YP_843083.1| - 2.3e-08 34.3 0.0 4.5e-06 26.9 0.0 2.5 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|116753965|ref|YP_843083.1| - 7.4e-08 32.9 0.0 1.8e-06 28.4 0.0 2.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|116753965|ref|YP_843083.1| - 0.21 11.2 0.1 0.39 10.3 0.1 1.4 1 0 0 1 1 1 0 Mitochondrial PGP phosphatase CGI-121 PF08617.10 gi|116753966|ref|YP_843084.1| - 1.1e-14 54.9 0.0 1.4e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 PABP PF00658.18 gi|116753966|ref|YP_843084.1| - 0.09 13.0 0.0 0.22 11.7 0.0 1.7 2 0 0 2 2 2 0 Poly-adenylate binding protein, unique domain DUF2150 PF09920.9 gi|116753967|ref|YP_843085.1| - 2.1e-66 223.5 0.8 2.5e-66 223.3 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Lant_dehydr_N PF04738.13 gi|116753967|ref|YP_843085.1| - 0.023 12.8 0.2 0.029 12.5 0.2 1.0 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus Peptidase_M24 PF00557.24 gi|116753968|ref|YP_843086.1| - 1.8e-41 142.2 0.0 5.3e-41 140.6 0.0 1.6 1 1 0 1 1 1 1 Metallopeptidase family M24 tRNA-synt_2c PF01411.19 gi|116753969|ref|YP_843087.1| - 9.8e-127 423.8 0.0 1.4e-126 423.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|116753969|ref|YP_843087.1| - 9.4e-19 68.2 2.6 2e-18 67.1 2.6 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|116753969|ref|YP_843087.1| - 3.5e-15 55.8 1.2 8.8e-15 54.5 1.2 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain MJ1316 PF04457.12 gi|116753970|ref|YP_843088.1| - 2e-10 41.3 0.2 2.3e-10 41.0 0.2 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain DNA_pol_E_B PF04042.16 gi|116753971|ref|YP_843089.1| - 1.8e-11 43.8 0.0 2.6e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|116753971|ref|YP_843089.1| - 5e-08 33.7 0.1 7.8e-08 33.1 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|116753971|ref|YP_843089.1| - 1.6e-07 31.7 0.0 3.8e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|116753971|ref|YP_843089.1| - 4.7e-06 26.5 0.1 1.1e-05 25.3 0.1 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Frankia_peptide PF14407.6 gi|116753971|ref|YP_843089.1| - 0.14 12.2 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. Peptidase_S24 PF00717.23 gi|116753972|ref|YP_843090.1| - 0.00034 20.5 0.1 0.00068 19.6 0.1 1.5 1 0 0 1 1 1 1 Peptidase S24-like Fibrillarin PF01269.17 gi|116753973|ref|YP_843091.1| - 7e-62 208.5 0.0 7.6e-62 208.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Methyltransf_17 PF12692.7 gi|116753973|ref|YP_843091.1| - 0.047 13.7 0.0 0.081 12.9 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase NikR_C PF08753.11 gi|116753974|ref|YP_843092.1| - 3.7e-34 116.7 3.2 5.7e-34 116.1 3.2 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|116753974|ref|YP_843092.1| - 8e-10 38.3 0.1 1.9e-09 37.1 0.1 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|116753974|ref|YP_843092.1| - 0.0043 17.2 0.0 0.0078 16.3 0.0 1.4 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_8 PF17723.1 gi|116753974|ref|YP_843092.1| - 0.096 12.9 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family BPL_N PF09825.9 gi|116753975|ref|YP_843093.1| - 0.21 10.7 0.0 0.31 10.1 0.0 1.2 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal DUF1646 PF07854.12 gi|116753977|ref|YP_843095.1| - 8.4e-119 397.0 31.4 1.3e-118 396.4 31.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Phage_Gp19 PF09355.10 gi|116753977|ref|YP_843095.1| - 0.14 12.6 0.0 0.28 11.6 0.0 1.4 1 0 0 1 1 1 0 Phage protein Gp19/Gp15/Gp42 DUF2645 PF10840.8 gi|116753977|ref|YP_843095.1| - 2.4 8.8 9.3 0.38 11.4 0.3 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2645) DDDD PF10161.9 gi|116753977|ref|YP_843095.1| - 5.6 6.8 5.0 2.6 7.9 0.6 2.7 2 0 0 2 2 2 0 Putative mitochondrial precursor protein NPCBM_assoc PF10633.9 gi|116753978|ref|YP_843096.1| - 0.00059 20.0 0.7 0.0018 18.5 0.7 1.8 1 1 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF2807 PF10988.8 gi|116753978|ref|YP_843096.1| - 0.057 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Putative auto-transporter adhesin, head GIN domain DUF2850 PF11012.8 gi|116753980|ref|YP_843098.1| - 0.035 14.4 0.1 0.087 13.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2850) NRD1_2 PF01995.16 gi|116753981|ref|YP_843099.1| - 2.5e-73 246.3 0.0 3.1e-73 246.0 0.0 1.1 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|116753981|ref|YP_843099.1| - 1.1e-23 82.9 1.0 2.3e-23 81.9 0.6 1.8 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_IclR PF09339.10 gi|116753981|ref|YP_843099.1| - 0.0095 15.7 0.6 3.3 7.6 0.1 3.5 3 0 0 3 3 3 2 IclR helix-turn-helix domain Ribosomal_S6e PF01092.19 gi|116753982|ref|YP_843100.1| - 1.4e-43 147.9 0.0 1.5e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e FAD_binding_3 PF01494.19 gi|116753983|ref|YP_843101.1| - 1.1e-11 44.6 9.3 1.5e-09 37.6 1.3 2.9 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|116753983|ref|YP_843101.1| - 1.5e-07 31.2 2.4 2.4e-07 30.5 2.4 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|116753983|ref|YP_843101.1| - 4e-07 29.6 0.1 4.4e-06 26.1 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|116753983|ref|YP_843101.1| - 8.2e-07 28.2 0.1 0.026 13.4 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase DAO PF01266.24 gi|116753983|ref|YP_843101.1| - 3.1e-06 27.0 8.2 0.0079 15.8 1.6 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|116753983|ref|YP_843101.1| - 1e-05 24.8 0.6 1.8e-05 24.0 0.6 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|116753983|ref|YP_843101.1| - 1.1e-05 24.7 0.6 0.00048 19.3 0.1 2.3 2 1 0 2 2 2 1 Lycopene cyclase protein HI0933_like PF03486.14 gi|116753983|ref|YP_843101.1| - 1.2e-05 24.3 0.6 1.6e-05 23.8 0.6 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|116753983|ref|YP_843101.1| - 1.9e-05 24.8 0.3 6.2e-05 23.2 0.3 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|116753983|ref|YP_843101.1| - 3.4e-05 23.2 0.3 7.8e-05 22.1 0.3 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|116753983|ref|YP_843101.1| - 3.8e-05 23.0 0.6 8.6e-05 21.8 0.6 1.6 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|116753983|ref|YP_843101.1| - 8.4e-05 23.1 0.3 0.00025 21.5 0.2 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|116753983|ref|YP_843101.1| - 0.00018 20.9 1.2 0.0002 20.7 0.0 1.6 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|116753983|ref|YP_843101.1| - 0.019 14.3 0.3 0.027 13.7 0.3 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ATPgrasp_N PF18130.1 gi|116753983|ref|YP_843101.1| - 0.022 15.3 0.2 5.8 7.5 0.0 3.0 3 0 0 3 3 3 0 ATP-grasp N-terminal domain CoA_transf_3 PF02515.17 gi|116753983|ref|YP_843101.1| - 0.08 12.0 0.2 0.12 11.5 0.2 1.2 1 0 0 1 1 1 0 CoA-transferase family III NAD_binding_9 PF13454.6 gi|116753983|ref|YP_843101.1| - 0.13 12.3 0.2 13 5.8 0.2 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|116753983|ref|YP_843101.1| - 0.15 11.9 0.2 0.28 11.0 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SSF PF00474.17 gi|116753984|ref|YP_843102.1| - 1.4e-33 116.4 32.8 1.8e-33 116.0 32.8 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Nramp PF01566.18 gi|116753984|ref|YP_843102.1| - 0.0014 17.7 25.6 0.0031 16.5 25.6 1.6 1 1 0 1 1 1 1 Natural resistance-associated macrophage protein ILVD_EDD PF00920.21 gi|116753985|ref|YP_843103.1| - 4.2e-212 705.4 0.2 4.8e-212 705.2 0.2 1.0 1 0 0 1 1 1 1 Dehydratase family LigT_PEase PF02834.16 gi|116753986|ref|YP_843104.1| - 1.3e-29 102.2 0.2 3.8e-16 59.0 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|116753986|ref|YP_843104.1| - 6.6e-13 48.8 0.0 7.9e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily tRNA_NucTransf2 PF09249.11 gi|116753987|ref|YP_843105.1| - 8.7e-42 141.9 0.0 1.3e-41 141.3 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|116753987|ref|YP_843105.1| - 1.8e-13 50.5 0.0 5.4e-13 49.0 0.0 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|116753987|ref|YP_843105.1| - 0.024 14.7 0.0 0.097 12.8 0.0 2.0 2 0 0 2 2 2 0 Polymerase beta, Nucleotidyltransferase Hist_deacetyl PF00850.19 gi|116753988|ref|YP_843106.1| - 8.5e-90 301.3 0.0 1.2e-89 300.9 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain S-layer PF07752.11 gi|116753989|ref|YP_843107.1| - 2.8e-179 593.5 34.8 3.9e-90 301.4 13.3 2.1 2 0 0 2 2 2 2 S-layer protein PGF-CTERM PF18204.1 gi|116753989|ref|YP_843107.1| - 3e-09 36.5 3.2 3e-09 36.5 3.2 2.1 2 0 0 2 2 2 1 PGF-CTERM motif PA-IIL PF07472.11 gi|116753989|ref|YP_843107.1| - 0.00026 21.2 1.2 1.1 9.6 0.1 2.7 2 0 0 2 2 2 2 Fucose-binding lectin II (PA-IIL) CAP_C PF08603.11 gi|116753989|ref|YP_843107.1| - 0.0075 15.9 0.8 5.1 6.7 0.1 2.7 2 0 0 2 2 2 2 Adenylate cyclase associated (CAP) C terminal PrcB_C PF14343.6 gi|116753989|ref|YP_843107.1| - 0.015 15.4 0.5 12 6.2 0.1 3.1 2 0 0 2 2 2 0 PrcB C-terminal ThiF PF00899.21 gi|116753989|ref|YP_843107.1| - 0.033 13.6 0.0 5 6.4 0.0 2.7 3 0 0 3 3 3 0 ThiF family Myco_arth_vir_N PF09610.10 gi|116753989|ref|YP_843107.1| - 1.4 9.1 3.9 3.8 7.7 3.9 1.7 1 0 0 1 1 1 0 Mycoplasma virulence signal region (Myco_arth_vir_N) DUF3954 PF13128.6 gi|116753989|ref|YP_843107.1| - 3.9 7.3 11.9 68 3.4 0.2 4.5 4 0 0 4 4 4 0 Protein of unknown function (DUF3954) RIO1 PF01163.22 gi|116753990|ref|YP_843108.1| - 1.3e-11 44.5 0.0 1.9e-11 43.9 0.0 1.5 1 1 0 1 1 1 1 RIO1 family APH PF01636.23 gi|116753990|ref|YP_843108.1| - 1.7e-11 44.5 2.9 6e-06 26.3 0.4 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|116753990|ref|YP_843108.1| - 1.2e-08 34.6 0.3 2.8e-07 30.1 0.3 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|116753990|ref|YP_843108.1| - 2.1e-08 33.9 0.1 4e-08 33.0 0.1 1.5 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|116753990|ref|YP_843108.1| - 8.9e-06 25.5 0.1 1.1e-05 25.2 0.1 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.20 gi|116753990|ref|YP_843108.1| - 0.00015 21.4 0.1 0.058 13.0 0.2 2.2 1 1 1 2 2 2 2 Choline/ethanolamine kinase Pkinase_Tyr PF07714.17 gi|116753990|ref|YP_843108.1| - 0.00027 20.3 0.1 0.0012 18.2 0.1 1.9 1 1 0 1 1 1 1 Protein tyrosine kinase TetR_C_31 PF17940.1 gi|116753990|ref|YP_843108.1| - 0.04 14.1 1.0 0.04 14.1 1.0 2.1 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain EcKinase PF02958.20 gi|116753990|ref|YP_843108.1| - 0.047 13.0 0.0 0.047 13.0 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase Pkinase_fungal PF17667.1 gi|116753990|ref|YP_843108.1| - 0.097 11.4 0.0 0.12 11.1 0.0 1.3 1 0 0 1 1 1 0 Fungal protein kinase DUF1679 PF07914.11 gi|116753990|ref|YP_843108.1| - 0.098 11.5 0.0 0.098 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) DUF1786 PF08735.10 gi|116753991|ref|YP_843109.1| - 1.3e-91 306.4 0.0 1.5e-91 306.1 0.0 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) DDR PF08841.10 gi|116753991|ref|YP_843109.1| - 0.14 11.2 0.2 0.37 9.7 0.1 1.7 2 0 0 2 2 2 0 Diol dehydratase reactivase ATPase-like domain PALP PF00291.25 gi|116753992|ref|YP_843110.1| - 6.2e-28 98.1 0.0 8.8e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HalOD2 PF18547.1 gi|116753992|ref|YP_843110.1| - 0.28 11.1 1.2 0.59 10.1 0.4 1.9 2 0 0 2 2 2 0 Halobacterial output domain 2 ABC_tran PF00005.27 gi|116753993|ref|YP_843111.1| - 4e-13 50.0 0.0 5.7e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116753993|ref|YP_843111.1| - 2.7e-09 37.3 0.3 0.0022 17.9 0.1 2.7 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|116753993|ref|YP_843111.1| - 0.00012 22.4 0.0 0.00043 20.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|116753993|ref|YP_843111.1| - 0.00016 21.2 0.1 0.14 11.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|116753993|ref|YP_843111.1| - 0.00062 20.2 0.0 0.001 19.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|116753993|ref|YP_843111.1| - 0.0066 16.2 0.1 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|116753993|ref|YP_843111.1| - 0.021 15.4 0.0 0.03 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|116753993|ref|YP_843111.1| - 0.022 14.5 0.1 0.44 10.2 0.0 2.3 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 gi|116753993|ref|YP_843111.1| - 0.037 14.1 0.1 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|116753993|ref|YP_843111.1| - 0.042 13.8 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Adeno_IVa2 PF02456.15 gi|116753993|ref|YP_843111.1| - 0.054 12.3 0.0 0.08 11.7 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein ATP_bind_1 PF03029.17 gi|116753993|ref|YP_843111.1| - 0.068 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein KAP_NTPase PF07693.14 gi|116753993|ref|YP_843111.1| - 0.085 12.1 0.0 0.12 11.6 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain AAA_18 PF13238.6 gi|116753993|ref|YP_843111.1| - 0.11 13.0 0.0 0.23 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|116753993|ref|YP_843111.1| - 0.11 12.6 0.0 2.4 8.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) ATPase_2 PF01637.18 gi|116753993|ref|YP_843111.1| - 0.14 12.1 0.0 3.3 7.6 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_PrkA PF08298.11 gi|116753993|ref|YP_843111.1| - 0.17 10.7 0.0 0.29 10.0 0.0 1.4 1 0 0 1 1 1 0 PrkA AAA domain cobW PF02492.19 gi|116753994|ref|YP_843112.1| - 9.3e-14 51.4 0.0 1.6e-13 50.6 0.0 1.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|116753994|ref|YP_843112.1| - 2.8e-05 23.2 0.0 0.011 14.8 0.0 2.3 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_19 PF13245.6 gi|116753994|ref|YP_843112.1| - 0.0002 21.7 0.0 0.00035 20.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|116753994|ref|YP_843112.1| - 0.0023 17.8 0.0 0.0041 17.0 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 gi|116753994|ref|YP_843112.1| - 0.004 16.5 0.0 0.011 15.0 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_18 PF13238.6 gi|116753994|ref|YP_843112.1| - 0.0052 17.3 0.0 0.0077 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|116753994|ref|YP_843112.1| - 0.0057 16.3 0.0 0.0089 15.7 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain DUF2075 PF09848.9 gi|116753994|ref|YP_843112.1| - 0.0094 15.2 0.0 0.012 14.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.10 gi|116753994|ref|YP_843112.1| - 0.017 14.6 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|116753994|ref|YP_843112.1| - 0.031 14.4 0.1 0.056 13.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|116753994|ref|YP_843112.1| - 0.036 14.4 0.0 0.067 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain CbiA PF01656.23 gi|116753994|ref|YP_843112.1| - 0.04 14.0 0.0 0.053 13.6 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain TK PF00265.18 gi|116753994|ref|YP_843112.1| - 0.04 13.8 0.1 0.067 13.1 0.0 1.5 2 0 0 2 2 1 0 Thymidine kinase ATPase_2 PF01637.18 gi|116753994|ref|YP_843112.1| - 0.051 13.5 0.0 0.071 13.0 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Ploopntkinase3 PF18751.1 gi|116753994|ref|YP_843112.1| - 0.053 13.4 0.0 0.08 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 MipZ PF09140.11 gi|116753994|ref|YP_843112.1| - 0.056 12.7 0.0 0.065 12.5 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ NACHT PF05729.12 gi|116753994|ref|YP_843112.1| - 0.06 13.3 0.1 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.15 gi|116753994|ref|YP_843112.1| - 0.078 12.9 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 NTPase ATP_bind_1 PF03029.17 gi|116753994|ref|YP_843112.1| - 0.081 12.7 0.0 0.2 11.4 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein LpxK PF02606.14 gi|116753994|ref|YP_843112.1| - 0.088 11.9 0.4 0.17 10.9 0.2 1.5 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase TrwB_AAD_bind PF10412.9 gi|116753994|ref|YP_843112.1| - 0.1 11.5 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 gi|116753994|ref|YP_843112.1| - 0.11 12.2 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|116753994|ref|YP_843112.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Viral_helicase1 PF01443.18 gi|116753994|ref|YP_843112.1| - 0.14 11.8 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|116753994|ref|YP_843112.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|116753994|ref|YP_843112.1| - 0.16 12.2 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|116753994|ref|YP_843112.1| - 0.17 12.2 0.0 0.29 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|116753994|ref|YP_843112.1| - 0.17 11.6 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA12 PF10443.9 gi|116753994|ref|YP_843112.1| - 0.21 10.3 0.0 0.3 9.8 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein FeS PF04060.13 gi|116753995|ref|YP_843113.1| - 1.5e-12 47.0 0.9 3.6e-12 45.7 0.3 2.0 2 0 0 2 2 2 1 Putative Fe-S cluster Hexapep PF00132.24 gi|116753996|ref|YP_843114.1| - 1.6e-12 46.6 11.4 0.00013 21.6 0.5 3.8 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|116753996|ref|YP_843114.1| - 8.4e-12 44.6 3.6 3.2e-05 23.6 0.0 4.3 2 2 2 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|116753996|ref|YP_843114.1| - 0.13 11.2 0.0 0.41 9.5 0.0 1.7 1 1 1 2 2 2 0 L-fucokinase Sod_Fe_C PF02777.18 gi|116753997|ref|YP_843115.1| - 1.9e-32 111.4 0.1 2.7e-32 110.9 0.1 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|116753997|ref|YP_843115.1| - 2.4e-28 98.4 0.4 4.1e-28 97.7 0.4 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain PfkB PF00294.24 gi|116753998|ref|YP_843116.1| - 8.2e-54 182.9 0.0 1e-53 182.7 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|116753998|ref|YP_843116.1| - 1.3e-06 28.0 0.0 1.9e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|116753998|ref|YP_843116.1| - 0.0038 16.7 0.0 0.0043 16.6 0.0 1.1 1 0 0 1 1 1 1 Carbohydrate kinase CoA_binding_2 PF13380.6 gi|116753999|ref|YP_843117.1| - 1.2e-29 103.2 0.0 1.4e-29 103.0 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|116753999|ref|YP_843117.1| - 5.8e-06 26.9 0.0 7.4e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain Rhodanese PF00581.20 gi|116754000|ref|YP_843118.1| - 2.7e-23 82.5 0.0 1.8e-12 47.7 0.0 2.4 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|116754000|ref|YP_843118.1| - 1.6e-05 25.0 2.8 9.8e-05 22.4 1.9 2.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF1027 PF06265.11 gi|116754000|ref|YP_843118.1| - 0.22 11.6 0.1 0.52 10.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1027) Rhodanese PF00581.20 gi|116754001|ref|YP_843119.1| - 4.5e-34 117.2 0.0 9.7e-18 64.7 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain DGC PF08859.11 gi|116754002|ref|YP_843120.1| - 1.7e-31 108.5 1.3 1.9e-31 108.3 1.3 1.0 1 0 0 1 1 1 1 DGC domain Thioredoxin_3 PF13192.6 gi|116754003|ref|YP_843121.1| - 2.1e-26 91.7 1.9 2.3e-26 91.6 1.9 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|116754003|ref|YP_843121.1| - 0.0013 18.9 0.0 0.023 14.9 0.0 1.9 1 1 1 2 2 2 2 Thioredoxin Glutaredoxin PF00462.24 gi|116754003|ref|YP_843121.1| - 0.013 15.7 0.3 0.023 14.9 0.3 1.6 1 1 0 1 1 1 0 Glutaredoxin Thioredoxin PF00085.20 gi|116754003|ref|YP_843121.1| - 0.02 14.9 0.0 0.02 14.9 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Rhodanese PF00581.20 gi|116754004|ref|YP_843122.1| - 2.8e-17 63.2 0.0 2.7e-11 43.9 0.0 2.8 2 1 1 3 3 3 2 Rhodanese-like domain FlgD_ig PF13860.6 gi|116754004|ref|YP_843122.1| - 0.019 14.8 0.8 0.038 13.9 0.2 1.7 2 0 0 2 2 2 0 FlgD Ig-like domain NAD_synthase PF02540.17 gi|116754005|ref|YP_843123.1| - 3.1e-07 29.8 0.0 5.1e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|116754005|ref|YP_843123.1| - 0.019 14.5 0.0 0.23 10.9 0.0 2.3 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|116754005|ref|YP_843123.1| - 0.021 14.5 0.1 0.032 13.9 0.1 1.2 1 0 0 1 1 1 0 Asparagine synthase ATP_bind_3 PF01171.20 gi|116754005|ref|YP_843123.1| - 0.031 14.0 0.0 0.17 11.6 0.0 2.1 1 1 0 2 2 2 0 PP-loop family Diphthami_syn_2 PF01902.17 gi|116754005|ref|YP_843123.1| - 0.041 13.4 0.0 0.12 11.9 0.0 1.8 2 0 0 2 2 2 0 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|116754005|ref|YP_843123.1| - 0.042 12.6 0.1 1.3 7.7 0.4 2.5 2 1 0 2 2 2 0 tRNA methyl transferase TGT_C2 PF14810.6 gi|116754006|ref|YP_843124.1| - 2.3e-24 85.3 0.1 5.6e-24 84.1 0.1 1.7 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|116754006|ref|YP_843124.1| - 1.9e-16 59.8 0.1 2.8e-16 59.2 0.1 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|116754006|ref|YP_843124.1| - 0.00029 21.0 0.0 0.00042 20.5 0.0 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain DDE_Tnp_IS240 PF13610.6 gi|116754007|ref|YP_843125.1| - 0.00012 22.3 0.0 0.00018 21.8 0.0 1.2 1 0 0 1 1 1 1 DDE domain SpoIIID PF12116.8 gi|116754007|ref|YP_843125.1| - 0.0013 18.8 0.0 0.0019 18.3 0.0 1.3 1 0 0 1 1 1 1 Stage III sporulation protein D HTH_23 PF13384.6 gi|116754007|ref|YP_843125.1| - 0.0021 17.8 0.0 0.003 17.3 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_30 PF13556.6 gi|116754007|ref|YP_843125.1| - 0.0078 16.0 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain Terminase_5 PF06056.12 gi|116754007|ref|YP_843125.1| - 0.016 15.1 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) CorA PF01544.18 gi|116754008|ref|YP_843126.1| - 3.7e-71 239.8 6.2 4.4e-71 239.6 6.2 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein AAA PF00004.29 gi|116754010|ref|YP_843128.1| - 3.2e-36 124.7 0.0 4.8e-36 124.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|116754010|ref|YP_843128.1| - 2.5e-07 30.4 0.1 5.3e-07 29.4 0.1 1.5 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|116754010|ref|YP_843128.1| - 9.6e-07 29.1 0.0 1.9e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|116754010|ref|YP_843128.1| - 1.2e-05 25.1 0.0 5.1e-05 23.1 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|116754010|ref|YP_843128.1| - 1.3e-05 25.7 0.4 0.00037 20.9 0.4 2.8 1 1 0 1 1 1 1 AAA ATPase domain Bac_DnaA PF00308.18 gi|116754010|ref|YP_843128.1| - 8.5e-05 22.5 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial dnaA protein TIP49 PF06068.13 gi|116754010|ref|YP_843128.1| - 0.0002 20.7 0.1 0.00065 19.0 0.0 1.8 2 0 0 2 2 2 1 TIP49 P-loop domain DUF815 PF05673.13 gi|116754010|ref|YP_843128.1| - 0.00082 18.6 0.0 0.0055 15.9 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|116754010|ref|YP_843128.1| - 0.00089 19.3 0.0 0.0035 17.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|116754010|ref|YP_843128.1| - 0.0013 19.0 0.5 0.059 13.6 0.0 2.5 1 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|116754010|ref|YP_843128.1| - 0.0013 18.5 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|116754010|ref|YP_843128.1| - 0.0044 16.4 0.0 0.0099 15.3 0.0 1.6 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|116754010|ref|YP_843128.1| - 0.0066 16.7 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|116754010|ref|YP_843128.1| - 0.0084 15.8 0.0 0.045 13.5 0.0 2.0 1 1 1 2 2 2 1 Sigma-54 interaction domain TsaE PF02367.17 gi|116754010|ref|YP_843128.1| - 0.013 15.5 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|116754010|ref|YP_843128.1| - 0.014 14.9 0.0 0.088 12.3 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|116754010|ref|YP_843128.1| - 0.015 15.5 0.0 0.028 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|116754010|ref|YP_843128.1| - 0.017 15.6 0.0 0.038 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|116754010|ref|YP_843128.1| - 0.034 14.5 0.0 0.057 13.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase TniB PF05621.11 gi|116754010|ref|YP_843128.1| - 0.044 13.2 0.1 0.4 10.1 0.0 2.3 2 1 0 2 2 2 0 Bacterial TniB protein AAA_24 PF13479.6 gi|116754010|ref|YP_843128.1| - 0.06 13.1 0.2 0.16 11.6 0.1 1.8 2 1 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|116754010|ref|YP_843128.1| - 0.078 12.1 0.1 1.2 8.3 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase Torsin PF06309.11 gi|116754010|ref|YP_843128.1| - 0.083 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Torsin NACHT PF05729.12 gi|116754010|ref|YP_843128.1| - 0.084 12.8 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Parvo_NS1 PF01057.17 gi|116754010|ref|YP_843128.1| - 0.11 11.6 0.1 0.16 11.0 0.1 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.6 gi|116754010|ref|YP_843128.1| - 0.14 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain CPT PF07931.12 gi|116754010|ref|YP_843128.1| - 0.15 11.9 0.1 1.5 8.7 0.0 2.1 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein tRNA_int_endo PF01974.17 gi|116754012|ref|YP_843130.1| - 2e-50 168.7 5.6 8.4e-26 89.9 3.8 2.2 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|116754012|ref|YP_843130.1| - 2.4e-41 139.2 1.4 7.6e-22 76.8 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|116754012|ref|YP_843130.1| - 0.00039 20.5 0.2 0.14 12.4 0.0 2.6 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term Sen15 PF09631.10 gi|116754012|ref|YP_843130.1| - 0.062 13.6 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Sen15 protein RsmJ PF04378.13 gi|116754014|ref|YP_843132.1| - 2.8e-13 49.7 0.0 3.6e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA large subunit methyltransferase D, RlmJ FeoB_N PF02421.18 gi|116754015|ref|YP_843133.1| - 7.9e-51 171.7 0.2 1.1e-50 171.2 0.2 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|116754015|ref|YP_843133.1| - 2.5e-25 88.9 17.8 2.4e-13 50.3 6.1 2.7 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|116754015|ref|YP_843133.1| - 8.8e-19 67.7 0.0 1.3e-18 67.1 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|116754015|ref|YP_843133.1| - 1.7e-12 46.8 1.7 7.7e-12 44.7 1.7 2.3 1 0 0 1 1 1 1 Ferrous iron transport protein B C terminus SRPRB PF09439.10 gi|116754015|ref|YP_843133.1| - 1.6e-05 24.4 0.0 2.6e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|116754015|ref|YP_843133.1| - 0.0034 16.7 0.0 0.0055 16.1 0.0 1.3 1 0 0 1 1 1 1 AIG1 family Roc PF08477.13 gi|116754015|ref|YP_843133.1| - 0.05 13.8 0.0 0.28 11.4 0.0 2.0 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase BPD_transp_1 PF00528.22 gi|116754016|ref|YP_843134.1| - 2.4e-23 82.9 12.9 2.4e-23 82.9 12.9 2.5 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|116754017|ref|YP_843135.1| - 2.6e-27 95.8 11.4 2.6e-27 95.8 11.4 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF5612 PF18462.1 gi|116754018|ref|YP_843136.1| - 2.5e-70 234.9 5.2 3.8e-70 234.3 5.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|116754018|ref|YP_843136.1| - 1.2e-09 37.7 0.1 3.8e-09 36.1 0.1 1.9 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|116754018|ref|YP_843136.1| - 5.4e-05 23.7 0.0 0.00016 22.2 0.0 1.8 1 1 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|116754018|ref|YP_843136.1| - 0.00016 21.6 0.0 0.0004 20.3 0.0 1.7 1 0 0 1 1 1 1 ACT domain Peripla_BP_1 PF00532.21 gi|116754018|ref|YP_843136.1| - 0.038 13.4 0.1 0.065 12.6 0.1 1.4 1 1 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family DUF1178 PF06676.11 gi|116754018|ref|YP_843136.1| - 0.2 12.0 0.3 7.6 6.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1178) Glutaredoxin PF00462.24 gi|116754019|ref|YP_843137.1| - 4.9e-09 36.3 0.0 6.1e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.14 gi|116754019|ref|YP_843137.1| - 0.00018 21.8 0.0 0.00022 21.5 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 gi|116754019|ref|YP_843137.1| - 0.00031 20.8 0.0 0.00048 20.1 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin domain GST_N PF02798.20 gi|116754019|ref|YP_843137.1| - 0.00034 20.9 0.0 0.00041 20.6 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 gi|116754019|ref|YP_843137.1| - 0.00074 19.9 0.0 0.00098 19.5 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain SH3BGR PF04908.15 gi|116754019|ref|YP_843137.1| - 0.062 13.5 0.0 0.067 13.4 0.0 1.1 1 0 0 1 1 1 0 SH3-binding, glutamic acid-rich protein Pex14_N PF04695.13 gi|116754019|ref|YP_843137.1| - 0.12 13.0 0.0 0.13 12.9 0.0 1.1 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Hjc PF01870.18 gi|116754021|ref|YP_843139.1| - 0.088 12.8 0.0 0.19 11.7 0.0 1.6 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Thymidylat_synt PF00303.19 gi|116754022|ref|YP_843140.1| - 1.7e-21 76.5 0.0 2.3e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 Thymidylate synthase Thioredoxin PF00085.20 gi|116754023|ref|YP_843141.1| - 4.9e-25 87.5 0.0 6.2e-25 87.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|116754023|ref|YP_843141.1| - 3.7e-08 33.8 0.1 5e-06 26.9 0.1 2.9 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|116754023|ref|YP_843141.1| - 3e-06 27.4 0.0 0.0013 19.0 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|116754023|ref|YP_843141.1| - 0.00024 20.9 0.0 0.00036 20.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|116754023|ref|YP_843141.1| - 0.0025 17.2 0.0 0.0031 16.9 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family HyaE PF07449.11 gi|116754023|ref|YP_843141.1| - 0.0078 16.2 0.0 0.013 15.5 0.0 1.5 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE DUF953 PF06110.11 gi|116754023|ref|YP_843141.1| - 0.074 12.7 0.1 0.43 10.2 0.1 1.9 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Thioredoxin_7 PF13899.6 gi|116754023|ref|YP_843141.1| - 0.096 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like AhpC-TSA PF00578.21 gi|116754023|ref|YP_843141.1| - 0.12 12.2 0.0 0.42 10.5 0.0 1.7 1 1 1 2 2 2 0 AhpC/TSA family Redoxin PF08534.10 gi|116754023|ref|YP_843141.1| - 0.13 11.9 0.0 0.26 11.0 0.0 1.6 1 1 1 2 2 2 0 Redoxin Thioredoxin_3 PF13192.6 gi|116754023|ref|YP_843141.1| - 0.15 12.1 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin domain DUF1638 PF07796.11 gi|116754024|ref|YP_843142.1| - 1.3e-29 103.3 0.1 1.8e-29 102.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) OCD_Mu_crystall PF02423.15 gi|116754025|ref|YP_843143.1| - 2.8e-111 371.5 0.0 3.1e-111 371.3 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|116754025|ref|YP_843143.1| - 2.7e-06 27.5 0.0 5.3e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ACR_tran PF00873.19 gi|116754025|ref|YP_843143.1| - 0.018 12.7 0.0 0.027 12.2 0.0 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family FAD_binding_3 PF01494.19 gi|116754026|ref|YP_843144.1| - 8.5e-10 38.4 1.2 3.1e-05 23.4 0.3 3.1 3 0 0 3 3 3 3 FAD binding domain Lycopene_cycl PF05834.12 gi|116754026|ref|YP_843144.1| - 6.9e-09 35.2 0.4 3.9e-08 32.8 0.4 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|116754026|ref|YP_843144.1| - 8.2e-09 35.1 0.2 0.00011 21.6 0.2 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|116754026|ref|YP_843144.1| - 2.9e-08 32.9 2.1 1.2e-07 30.8 0.6 2.0 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|116754026|ref|YP_843144.1| - 1.8e-07 31.1 0.8 0.0024 17.5 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|116754026|ref|YP_843144.1| - 1.4e-05 24.5 0.1 0.004 16.5 0.6 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|116754026|ref|YP_843144.1| - 2.7e-05 23.7 0.2 3.6e-05 23.3 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|116754026|ref|YP_843144.1| - 3.4e-05 23.1 1.9 4.3e-05 22.8 1.1 1.6 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|116754026|ref|YP_843144.1| - 8.8e-05 21.8 0.1 0.00013 21.2 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|116754026|ref|YP_843144.1| - 0.00015 21.1 0.3 0.0003 20.1 0.3 1.5 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|116754026|ref|YP_843144.1| - 0.0048 16.2 0.2 0.0091 15.3 0.2 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|116754026|ref|YP_843144.1| - 0.0064 15.4 0.2 1.2 7.9 0.3 2.5 3 0 0 3 3 3 2 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|116754026|ref|YP_843144.1| - 0.01 16.1 0.6 0.028 14.6 0.2 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|116754026|ref|YP_843144.1| - 0.049 14.2 0.4 1.1 9.9 0.1 2.8 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase DUF835 PF05763.12 gi|116754027|ref|YP_843145.1| - 1.1e-55 187.1 0.0 9.4e-34 116.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF835) DUF347 PF03988.12 gi|116754027|ref|YP_843145.1| - 0.27 11.5 8.6 0.26 11.5 0.2 4.3 4 0 0 4 4 4 0 Repeat of Unknown Function (DUF347) ATPase PF06745.13 gi|116754028|ref|YP_843146.1| - 1.8e-34 119.1 0.0 2.2e-34 118.8 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_16 PF13191.6 gi|116754028|ref|YP_843146.1| - 0.00032 21.1 0.0 0.00051 20.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|116754028|ref|YP_843146.1| - 0.00073 19.8 0.0 0.0011 19.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|116754028|ref|YP_843146.1| - 0.0035 16.4 0.0 0.0047 16.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Rad51 PF08423.11 gi|116754028|ref|YP_843146.1| - 0.0037 16.6 0.0 0.011 15.0 0.1 1.7 2 0 0 2 2 2 1 Rad51 AAA_29 PF13555.6 gi|116754028|ref|YP_843146.1| - 0.0075 16.0 0.2 0.016 15.0 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|116754028|ref|YP_843146.1| - 0.01 15.4 0.1 0.027 14.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|116754028|ref|YP_843146.1| - 0.022 14.7 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|116754028|ref|YP_843146.1| - 0.037 14.5 0.2 0.065 13.7 0.2 1.3 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|116754028|ref|YP_843146.1| - 0.052 13.3 0.0 0.067 13.0 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_7 PF12775.7 gi|116754028|ref|YP_843146.1| - 0.062 12.8 0.0 0.088 12.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|116754028|ref|YP_843146.1| - 0.068 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.12 gi|116754028|ref|YP_843146.1| - 0.089 12.7 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|116754028|ref|YP_843146.1| - 0.19 11.0 0.1 0.35 10.1 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin DUF4346 PF14251.6 gi|116754029|ref|YP_843147.1| - 1.1e-11 44.8 0.0 8.8e-11 41.9 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|116754029|ref|YP_843147.1| - 1.2e-07 31.6 0.1 3.4e-07 30.2 0.1 1.8 2 0 0 2 2 2 1 Pterin binding enzyme DUF473 PF04322.12 gi|116754031|ref|YP_843149.1| - 1.2e-43 147.6 0.1 1.4e-43 147.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) HTH_26 PF13443.6 gi|116754031|ref|YP_843149.1| - 0.12 12.9 0.0 1.1 9.7 0.0 2.3 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain PAC2 PF09754.9 gi|116754032|ref|YP_843150.1| - 3.6e-50 170.9 0.0 4.1e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 PAC2 family AAA PF00004.29 gi|116754033|ref|YP_843151.1| - 6.1e-94 311.4 0.0 4.7e-47 159.7 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|116754033|ref|YP_843151.1| - 1.2e-33 114.6 3.7 2.2e-16 59.4 0.7 3.0 3 0 0 3 3 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|116754033|ref|YP_843151.1| - 7.1e-31 106.2 1.1 3e-30 104.2 0.6 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|116754033|ref|YP_843151.1| - 1.5e-16 59.9 0.0 4.5e-16 58.4 0.0 1.9 1 1 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|116754033|ref|YP_843151.1| - 4.9e-16 59.6 0.0 8.6e-07 29.5 0.0 3.7 2 2 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.12 gi|116754033|ref|YP_843151.1| - 4e-14 52.7 0.0 8.9e-06 25.5 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|116754033|ref|YP_843151.1| - 8.3e-14 52.1 0.0 3.8e-07 30.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|116754033|ref|YP_843151.1| - 2.3e-12 47.3 0.1 0.00044 20.5 0.0 4.1 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|116754033|ref|YP_843151.1| - 6.5e-10 38.7 0.0 0.0012 18.2 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|116754033|ref|YP_843151.1| - 7.7e-10 38.9 0.0 3.7e-05 23.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|116754033|ref|YP_843151.1| - 1.3e-09 38.2 1.0 0.0028 17.7 0.0 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|116754033|ref|YP_843151.1| - 1.1e-08 35.3 0.0 0.0012 19.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|116754033|ref|YP_843151.1| - 1.1e-08 35.0 0.0 0.0065 16.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|116754033|ref|YP_843151.1| - 2.6e-08 33.5 1.0 0.0064 15.9 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|116754033|ref|YP_843151.1| - 2.7e-08 34.4 0.0 0.012 16.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|116754033|ref|YP_843151.1| - 2.8e-08 33.7 0.0 0.012 15.3 0.0 3.0 3 0 0 3 3 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|116754033|ref|YP_843151.1| - 2.7e-07 30.9 0.0 0.014 15.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.6 gi|116754033|ref|YP_843151.1| - 4.1e-07 30.4 0.0 0.01 16.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|116754033|ref|YP_843151.1| - 6.1e-07 29.3 0.0 0.031 14.0 0.0 2.9 2 1 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.12 gi|116754033|ref|YP_843151.1| - 6.2e-07 29.5 0.2 0.23 11.3 0.0 4.0 3 1 0 3 3 3 2 NACHT domain AAA_7 PF12775.7 gi|116754033|ref|YP_843151.1| - 1e-06 28.4 0.0 0.025 14.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|116754033|ref|YP_843151.1| - 1.3e-06 28.5 0.1 0.08 12.8 0.0 3.5 2 2 2 4 4 4 2 ATPase domain predominantly from Archaea Parvo_NS1 PF01057.17 gi|116754033|ref|YP_843151.1| - 4.9e-06 25.8 0.0 0.057 12.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|116754033|ref|YP_843151.1| - 7.5e-06 26.0 0.0 0.2 11.6 0.0 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|116754033|ref|YP_843151.1| - 9.9e-06 26.1 0.0 0.13 12.8 0.0 2.4 2 0 0 2 2 2 2 ABC transporter DUF815 PF05673.13 gi|116754033|ref|YP_843151.1| - 1.1e-05 24.8 0.0 0.11 11.6 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.6 gi|116754033|ref|YP_843151.1| - 1.4e-05 24.8 6.4 0.34 10.5 0.7 4.1 2 2 1 3 3 3 2 AAA domain Zeta_toxin PF06414.12 gi|116754033|ref|YP_843151.1| - 2.1e-05 23.9 0.1 0.16 11.2 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin NB-ARC PF00931.22 gi|116754033|ref|YP_843151.1| - 7.6e-05 22.0 0.0 0.46 9.6 0.0 2.5 3 0 0 3 3 2 2 NB-ARC domain ATPase PF06745.13 gi|116754033|ref|YP_843151.1| - 8.8e-05 22.0 0.1 0.64 9.3 0.0 2.9 2 1 1 3 3 3 2 KaiC DUF2075 PF09848.9 gi|116754033|ref|YP_843151.1| - 0.00015 21.1 0.0 0.13 11.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_3 PF07726.11 gi|116754033|ref|YP_843151.1| - 0.00031 20.6 0.0 0.99 9.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|116754033|ref|YP_843151.1| - 0.00046 19.7 0.1 0.98 8.8 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_30 PF13604.6 gi|116754033|ref|YP_843151.1| - 0.00073 19.3 0.3 1.6 8.4 0.1 2.5 2 0 0 2 2 2 2 AAA domain TniB PF05621.11 gi|116754033|ref|YP_843151.1| - 0.0008 18.9 0.0 2.1 7.7 0.0 3.2 4 0 0 4 4 2 1 Bacterial TniB protein AAA_17 PF13207.6 gi|116754033|ref|YP_843151.1| - 0.00082 19.8 0.0 1.6 9.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|116754033|ref|YP_843151.1| - 0.00089 19.1 0.0 1.4 8.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain Guanylate_kin PF00625.21 gi|116754033|ref|YP_843151.1| - 0.00091 19.0 0.1 13 5.4 0.0 4.2 2 2 2 4 4 4 0 Guanylate kinase Bac_DnaA PF00308.18 gi|116754033|ref|YP_843151.1| - 0.00096 19.0 0.0 1.9 8.3 0.0 3.0 2 1 0 2 2 2 1 Bacterial dnaA protein AAA_19 PF13245.6 gi|116754033|ref|YP_843151.1| - 0.0013 19.0 0.1 2.5 8.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain AFG1_ATPase PF03969.16 gi|116754033|ref|YP_843151.1| - 0.0032 16.4 0.0 2.5 6.9 0.0 2.5 3 0 0 3 3 2 2 AFG1-like ATPase ResIII PF04851.15 gi|116754033|ref|YP_843151.1| - 0.0035 17.4 0.0 0.87 9.6 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit NTPase_1 PF03266.15 gi|116754033|ref|YP_843151.1| - 0.0043 17.0 0.0 7.2 6.5 0.0 3.3 3 0 0 3 3 3 0 NTPase Sigma54_activ_2 PF14532.6 gi|116754033|ref|YP_843151.1| - 0.011 15.9 0.0 7.1 6.8 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Cytidylate_kin PF02224.18 gi|116754033|ref|YP_843151.1| - 0.011 15.5 0.2 5.1 6.8 0.1 2.7 2 0 0 2 2 2 0 Cytidylate kinase T2SSE PF00437.20 gi|116754033|ref|YP_843151.1| - 0.014 14.5 0.0 3.1 6.8 0.0 2.7 3 0 0 3 3 2 0 Type II/IV secretion system protein KAP_NTPase PF07693.14 gi|116754033|ref|YP_843151.1| - 0.016 14.5 0.3 4.5 6.4 0.0 3.3 2 2 1 4 4 4 0 KAP family P-loop domain PduV-EutP PF10662.9 gi|116754033|ref|YP_843151.1| - 0.017 14.9 0.0 5.9 6.6 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SKI PF01202.22 gi|116754033|ref|YP_843151.1| - 0.018 15.2 0.0 11 6.1 0.0 3.2 4 0 0 4 4 3 0 Shikimate kinase MCM PF00493.23 gi|116754033|ref|YP_843151.1| - 0.021 13.9 0.0 1.3 8.0 0.0 2.3 2 0 0 2 2 2 0 MCM P-loop domain ATP-synt_ab PF00006.25 gi|116754033|ref|YP_843151.1| - 0.026 14.2 0.0 8.7 5.9 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain IPT PF01745.16 gi|116754033|ref|YP_843151.1| - 0.041 13.3 0.2 12 5.2 0.0 2.6 3 0 0 3 3 2 0 Isopentenyl transferase AAA_29 PF13555.6 gi|116754033|ref|YP_843151.1| - 0.045 13.5 0.0 15 5.4 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain CPT PF07931.12 gi|116754033|ref|YP_843151.1| - 0.062 13.1 0.0 17 5.2 0.0 2.7 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein cobW PF02492.19 gi|116754033|ref|YP_843151.1| - 0.09 12.4 0.0 14 5.2 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.18 gi|116754033|ref|YP_843151.1| - 0.16 11.7 0.0 11 5.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Toprim_4 PF13662.6 gi|116754034|ref|YP_843152.1| - 3.3e-13 49.9 0.4 1.1e-12 48.3 0.2 2.0 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|116754034|ref|YP_843152.1| - 5.9e-06 26.6 0.0 1.6e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|116754034|ref|YP_843152.1| - 0.00018 21.7 1.2 0.0033 17.6 0.2 3.1 2 2 0 2 2 2 1 Toprim domain T5orf172 PF10544.9 gi|116754034|ref|YP_843152.1| - 0.7 10.5 3.9 1.2 9.7 3.1 1.8 1 1 0 1 1 1 0 T5orf172 domain NMD3 PF04981.13 gi|116754035|ref|YP_843153.1| - 3.2e-54 184.0 0.0 4.1e-54 183.6 0.0 1.1 1 0 0 1 1 1 1 NMD3 family Prim_Zn_Ribbon PF08273.12 gi|116754035|ref|YP_843153.1| - 0.24 11.7 2.3 9.9 6.5 0.1 2.7 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase CxC4 PF18717.1 gi|116754035|ref|YP_843153.1| - 1.2 9.0 4.6 16 5.3 0.2 2.2 2 0 0 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn-ribbon_8 PF09723.10 gi|116754035|ref|YP_843153.1| - 3.8 7.7 8.2 5.4 7.2 0.6 3.1 3 0 0 3 3 3 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|116754035|ref|YP_843153.1| - 4 7.5 6.7 2.5 8.2 0.3 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.6 gi|116754035|ref|YP_843153.1| - 7.2 6.6 8.1 1.6e+02 2.3 8.1 2.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DUF424 PF04242.13 gi|116754036|ref|YP_843154.1| - 2.9e-29 101.1 0.0 3.4e-29 101.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) AdoMet_Synthase PF01941.19 gi|116754038|ref|YP_843156.1| - 1.8e-177 590.1 2.2 2e-177 589.9 2.2 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) ZT_dimer PF16916.5 gi|116754038|ref|YP_843156.1| - 0.029 14.5 2.1 0.36 11.0 0.5 3.2 2 1 0 2 2 2 0 Dimerisation domain of Zinc Transporter NAD_synthase PF02540.17 gi|116754039|ref|YP_843157.1| - 2.1e-81 272.6 0.0 2.8e-81 272.2 0.0 1.2 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.22 gi|116754039|ref|YP_843157.1| - 3.8e-21 75.6 0.0 9e-21 74.4 0.0 1.6 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase tRNA_Me_trans PF03054.16 gi|116754039|ref|YP_843157.1| - 0.0059 15.4 0.0 0.0086 14.9 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|116754039|ref|YP_843157.1| - 0.0068 16.1 0.0 0.0094 15.6 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|116754039|ref|YP_843157.1| - 0.1 12.1 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Cas_Cas4 PF01930.17 gi|116754040|ref|YP_843158.1| - 8.1e-14 52.0 0.0 9.7e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|116754040|ref|YP_843158.1| - 9.1e-07 29.0 0.0 1.1e-06 28.8 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 gi|116754040|ref|YP_843158.1| - 0.047 13.0 0.0 0.062 12.6 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated exonuclease Csa1 DnaJ_C PF01556.18 gi|116754042|ref|YP_843160.1| - 1.5e-42 145.2 0.0 2e-42 144.8 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|116754042|ref|YP_843160.1| - 2.6e-29 101.1 3.1 3.9e-29 100.6 3.1 1.3 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|116754042|ref|YP_843160.1| - 1.1e-13 51.3 17.7 2e-13 50.5 17.7 1.4 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|116754042|ref|YP_843160.1| - 0.0027 17.6 13.5 0.055 13.4 1.7 3.6 1 1 2 3 3 3 3 Tryptophan RNA-binding attenuator protein inhibitory protein zf-ZPR1 PF03367.13 gi|116754042|ref|YP_843160.1| - 0.049 13.5 2.2 0.18 11.6 2.4 1.9 2 0 0 2 2 2 0 ZPR1 zinc-finger domain zinc_ribbon_4 PF13717.6 gi|116754042|ref|YP_843160.1| - 0.17 11.8 1.3 0.47 10.4 1.3 1.8 1 0 0 1 1 1 0 zinc-ribbon domain Cytochrom_c3_2 PF14537.6 gi|116754042|ref|YP_843160.1| - 0.89 10.1 3.8 2.2 8.8 3.8 1.7 1 1 0 1 1 1 0 Cytochrome c3 HypA PF01155.19 gi|116754042|ref|YP_843160.1| - 1.7 8.7 8.7 4 7.5 0.9 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HSP70 PF00012.20 gi|116754043|ref|YP_843161.1| - 7.8e-232 770.7 13.1 9.1e-212 704.5 9.8 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.13 gi|116754043|ref|YP_843161.1| - 6.6e-21 74.5 6.0 5.3e-20 71.5 6.0 2.4 1 1 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.16 gi|116754043|ref|YP_843161.1| - 8.1e-06 25.7 0.1 1.5e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Serglycin PF04360.12 gi|116754043|ref|YP_843161.1| - 0.047 13.6 0.4 0.087 12.8 0.4 1.4 1 0 0 1 1 1 0 Serglycin FliD_N PF02465.18 gi|116754043|ref|YP_843161.1| - 0.14 12.9 2.4 0.53 11.0 2.4 2.0 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus StbA PF06406.11 gi|116754043|ref|YP_843161.1| - 0.19 10.9 3.1 1.2 8.3 0.1 2.6 2 1 1 3 3 3 0 StbA protein PI3K_P85_iSH2 PF16454.5 gi|116754043|ref|YP_843161.1| - 0.2 11.2 10.7 0.49 10.0 10.7 1.6 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF1090 PF06476.12 gi|116754043|ref|YP_843161.1| - 0.63 10.2 12.2 1.4 9.0 12.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) DUF45 PF01863.17 gi|116754043|ref|YP_843161.1| - 1.3 9.1 5.2 2.3 8.2 4.1 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF45 MRP-L28 PF09812.9 gi|116754043|ref|YP_843161.1| - 1.6 8.9 9.3 3.2 7.9 9.3 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L28 Vfa1 PF08432.10 gi|116754043|ref|YP_843161.1| - 1.7 9.0 8.5 2.7 8.3 8.5 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 DUF3347 PF11827.8 gi|116754043|ref|YP_843161.1| - 2.4 8.3 6.8 4.4 7.4 6.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) GrpE PF01025.19 gi|116754044|ref|YP_843162.1| - 1.9e-39 135.0 5.5 3.3e-39 134.2 5.5 1.3 1 1 0 1 1 1 1 GrpE GyrB_insert PF18053.1 gi|116754044|ref|YP_843162.1| - 0.073 13.0 1.1 0.15 11.9 1.0 1.6 1 1 0 1 1 1 0 DNA gyrase B subunit insert domain DUF4404 PF14357.6 gi|116754044|ref|YP_843162.1| - 0.087 13.5 3.7 0.18 12.5 3.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4404) Ada3 PF10198.9 gi|116754044|ref|YP_843162.1| - 0.1 12.7 2.2 0.22 11.6 2.2 1.6 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 TnpV PF14198.6 gi|116754044|ref|YP_843162.1| - 0.18 11.8 1.5 3 7.9 0.5 2.1 1 1 1 2 2 2 0 Transposon-encoded protein TnpV Cpn60_TCP1 PF00118.24 gi|116754045|ref|YP_843163.1| - 1.3e-174 581.4 17.8 1.5e-174 581.2 17.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family KDGP_aldolase PF07071.11 gi|116754045|ref|YP_843163.1| - 0.01 15.6 1.5 0.019 14.8 1.5 1.4 1 0 0 1 1 1 0 KDGP aldolase EIF_2_alpha PF07541.12 gi|116754045|ref|YP_843163.1| - 0.082 13.0 2.1 0.13 12.4 1.2 1.7 2 0 0 2 2 2 0 Eukaryotic translation initiation factor 2 alpha subunit AAA_5 PF07728.14 gi|116754045|ref|YP_843163.1| - 0.11 12.5 0.2 0.96 9.4 0.0 2.5 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) tRNA-synt_1b PF00579.25 gi|116754045|ref|YP_843163.1| - 0.12 11.7 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) zinc_ribbon_6 PF14599.6 gi|116754046|ref|YP_843164.1| - 0.00026 20.9 1.3 0.00066 19.7 1.4 1.6 1 1 1 2 2 2 1 Zinc-ribbon LIM PF00412.22 gi|116754046|ref|YP_843164.1| - 0.018 15.3 1.4 0.024 14.9 1.4 1.2 1 0 0 1 1 1 0 LIM domain zf-dskA_traR PF01258.17 gi|116754046|ref|YP_843164.1| - 0.044 13.7 2.1 2.9 7.9 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF4366 PF14283.6 gi|116754047|ref|YP_843165.1| - 0.11 12.5 0.3 0.36 10.8 0.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4366) Met_10 PF02475.16 gi|116754048|ref|YP_843166.1| - 8.2e-60 202.0 0.0 1.1e-59 201.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|116754048|ref|YP_843166.1| - 3.4e-09 36.4 0.1 9.2e-09 35.1 0.1 1.7 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain MTS PF05175.14 gi|116754048|ref|YP_843166.1| - 0.00033 20.3 0.0 0.00057 19.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|116754048|ref|YP_843166.1| - 0.0038 17.9 0.0 0.0062 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|116754048|ref|YP_843166.1| - 0.022 14.3 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|116754048|ref|YP_843166.1| - 0.07 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TRM PF02005.16 gi|116754048|ref|YP_843166.1| - 0.15 11.2 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Cas_Cas4 PF01930.17 gi|116754049|ref|YP_843167.1| - 2.2e-08 34.4 0.0 3.9e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|116754049|ref|YP_843167.1| - 1.5e-05 25.1 0.0 0.00071 19.6 0.0 2.2 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 gi|116754049|ref|YP_843167.1| - 0.00072 19.0 0.0 0.0021 17.5 0.1 1.6 2 0 0 2 2 2 1 CRISPR-associated exonuclease Csa1 NifU_N PF01592.16 gi|116754053|ref|YP_843171.1| - 2.2e-48 163.6 0.1 2.5e-48 163.5 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain MC1 PF05854.11 gi|116754054|ref|YP_843172.1| - 3.6e-39 133.0 0.3 4.8e-39 132.5 0.3 1.1 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Rubrerythrin PF02915.17 gi|116754055|ref|YP_843173.1| - 5e-25 88.5 13.6 5e-24 85.2 13.6 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|116754055|ref|YP_843173.1| - 0.0041 17.1 6.1 0.0073 16.2 6.1 1.5 1 1 0 1 1 1 1 Ferritin-like domain zf-RRN7 PF11781.8 gi|116754055|ref|YP_843173.1| - 0.045 13.4 2.8 0.95 9.2 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HypA PF01155.19 gi|116754055|ref|YP_843173.1| - 0.053 13.5 0.5 0.084 12.9 0.5 1.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|116754055|ref|YP_843173.1| - 0.075 13.1 0.4 0.11 12.5 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon Acetone_carb_G PF08882.11 gi|116754055|ref|YP_843173.1| - 0.15 12.2 0.8 0.3 11.3 0.7 1.6 1 1 0 1 1 1 0 Acetone carboxylase gamma subunit DNA_ligase_ZBD PF03119.16 gi|116754055|ref|YP_843173.1| - 0.22 11.6 7.5 2.6 8.1 2.1 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|116754055|ref|YP_843173.1| - 0.37 10.3 4.1 2.7 7.5 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|116754055|ref|YP_843173.1| - 0.42 11.2 1.4 18 6.0 0.1 2.8 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-Di19 PF05605.12 gi|116754055|ref|YP_843173.1| - 0.54 10.6 3.0 3.6 8.0 0.2 2.4 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF2524 PF10732.9 gi|116754055|ref|YP_843173.1| - 0.87 9.9 5.6 0.66 10.3 1.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2524) Lar_restr_allev PF14354.6 gi|116754055|ref|YP_843173.1| - 1.9 8.9 5.3 16 6.0 0.2 2.8 2 1 1 3 3 3 0 Restriction alleviation protein Lar ERp29 PF07749.12 gi|116754055|ref|YP_843173.1| - 2.6 9.0 8.4 1.3 10.0 2.7 2.3 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain Rad50_zn_hook PF04423.14 gi|116754055|ref|YP_843173.1| - 5.7 6.9 12.0 0.76 9.7 1.0 3.4 2 1 1 3 3 3 0 Rad50 zinc hook motif NIR_SIR PF01077.22 gi|116754056|ref|YP_843174.1| - 1.1e-29 103.0 0.1 5.6e-29 100.7 0.1 1.8 2 0 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|116754056|ref|YP_843174.1| - 1.1e-15 57.3 0.0 1.8e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Orn_Arg_deC_N PF02784.16 gi|116754057|ref|YP_843175.1| - 1.9e-60 204.3 0.0 4e-60 203.2 0.0 1.5 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|116754057|ref|YP_843175.1| - 3.9e-24 84.7 0.0 4.7e-24 84.5 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|116754057|ref|YP_843175.1| - 3.2e-12 46.6 0.0 7.2e-12 45.4 0.0 1.5 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain S6PP PF05116.13 gi|116754057|ref|YP_843175.1| - 0.034 13.7 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase Biotin_lipoyl_2 PF13533.6 gi|116754057|ref|YP_843175.1| - 0.05 13.4 0.0 0.21 11.5 0.0 2.0 3 0 0 3 3 3 0 Biotin-lipoyl like HEAT_2 PF13646.6 gi|116754058|ref|YP_843176.1| - 4.8e-75 248.0 30.3 1.1e-19 70.6 4.7 4.9 1 1 3 5 5 5 5 HEAT repeats HEAT PF02985.22 gi|116754058|ref|YP_843176.1| - 1.4e-33 112.0 15.0 2.7e-05 24.0 0.0 9.2 9 0 0 9 9 9 8 HEAT repeat HEAT_PBS PF03130.16 gi|116754058|ref|YP_843176.1| - 6.5e-30 100.7 38.9 8.3e-07 29.1 0.1 9.3 9 0 0 9 9 9 7 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|116754058|ref|YP_843176.1| - 9.3e-23 80.3 23.6 7.5e-06 26.3 0.0 8.4 7 1 1 8 8 8 8 HEAT-like repeat Arm PF00514.23 gi|116754058|ref|YP_843176.1| - 3.6e-14 52.2 7.1 0.05 13.7 0.0 7.5 5 2 4 9 9 9 3 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|116754058|ref|YP_843176.1| - 1.5e-12 47.8 0.0 0.073 13.1 0.1 4.9 1 1 2 4 4 4 4 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|116754058|ref|YP_843176.1| - 1.3e-06 27.3 0.0 0.035 12.7 0.0 3.8 2 2 1 3 3 3 2 Adaptin N terminal region CLASP_N PF12348.8 gi|116754058|ref|YP_843176.1| - 0.0012 18.4 0.2 4 6.9 0.2 3.6 3 1 0 3 3 3 2 CLASP N terminal RTP1_C1 PF10363.9 gi|116754058|ref|YP_843176.1| - 0.016 15.3 0.0 1.7 8.8 0.0 3.5 1 1 1 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 1 UTP15_C PF09384.10 gi|116754058|ref|YP_843176.1| - 0.047 13.4 0.3 1.8 8.2 0.5 2.7 2 1 1 3 3 3 0 UTP15 C terminal DUF4042 PF13251.6 gi|116754058|ref|YP_843176.1| - 0.058 13.1 1.6 39 3.9 0.2 4.3 2 2 4 6 6 6 0 Domain of unknown function (DUF4042) Flot PF15975.5 gi|116754058|ref|YP_843176.1| - 0.11 12.6 2.1 0.28 11.4 2.1 1.6 1 0 0 1 1 1 0 Flotillin API5 PF05918.11 gi|116754058|ref|YP_843176.1| - 0.21 10.4 0.4 4.9 5.9 0.0 2.1 2 0 0 2 2 2 0 Apoptosis inhibitory protein 5 (API5) MscL PF01741.18 gi|116754059|ref|YP_843177.1| - 1.1e-38 132.3 0.7 1.3e-38 132.0 0.7 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL UPF0547 PF10571.9 gi|116754059|ref|YP_843177.1| - 5.4e-06 26.4 3.8 8.7e-06 25.7 3.8 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 FeoB_associated PF12669.7 gi|116754059|ref|YP_843177.1| - 0.0049 17.2 3.3 0.072 13.5 0.0 2.4 2 0 0 2 2 2 1 FeoB-associated Cys-rich membrane protein DZR PF12773.7 gi|116754059|ref|YP_843177.1| - 0.0064 16.5 1.3 0.0087 16.1 1.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|116754059|ref|YP_843177.1| - 0.025 14.3 2.7 0.071 12.9 2.4 1.8 1 1 1 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|116754059|ref|YP_843177.1| - 0.1 12.5 2.2 3.8 7.5 0.3 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-C3HC4_3 PF13920.6 gi|116754059|ref|YP_843177.1| - 0.8 9.6 4.8 0.89 9.5 0.5 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-Di19 PF05605.12 gi|116754059|ref|YP_843177.1| - 1.3 9.3 6.6 7.8 6.9 0.5 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-CHCC PF10276.9 gi|116754059|ref|YP_843177.1| - 2.3 8.4 6.2 15 5.7 0.5 2.6 3 0 0 3 3 3 0 Zinc-finger domain zf-ribbon_3 PF13248.6 gi|116754059|ref|YP_843177.1| - 6.8 6.2 7.4 44 3.7 7.4 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Phosphodiest PF01663.22 gi|116754060|ref|YP_843178.1| - 1.1e-13 51.5 0.5 2.7e-07 30.5 0.0 2.1 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|116754060|ref|YP_843178.1| - 2e-12 47.2 0.0 3.1e-09 36.7 0.0 2.9 2 1 0 3 3 3 2 Sulfatase Metalloenzyme PF01676.18 gi|116754060|ref|YP_843178.1| - 0.00015 21.2 0.0 0.00061 19.2 0.0 1.8 2 0 0 2 2 2 1 Metalloenzyme superfamily CxxCxxCC PF03692.15 gi|116754061|ref|YP_843179.1| - 6.8e-16 58.7 2.9 1.1e-15 58.1 2.9 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Pribosyltran PF00156.27 gi|116754062|ref|YP_843180.1| - 8.8e-20 70.8 0.0 1.3e-19 70.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|116754062|ref|YP_843180.1| - 0.017 14.6 0.0 0.023 14.2 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase RD3 PF14473.6 gi|116754062|ref|YP_843180.1| - 0.16 11.8 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 RD3 protein Lar_N PF09861.9 gi|116754064|ref|YP_843182.1| - 1.9e-56 190.5 0.0 3.1e-56 189.8 0.0 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain GRASP55_65 PF04495.14 gi|116754064|ref|YP_843182.1| - 0.0087 16.4 0.0 0.02 15.2 0.0 1.7 2 0 0 2 2 2 1 GRASP55/65 PDZ-like domain DUF362 PF04015.12 gi|116754064|ref|YP_843182.1| - 0.016 15.4 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF362) DUF2157 PF09925.9 gi|116754065|ref|YP_843183.1| - 0.23 11.2 8.4 3.6 7.4 8.4 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) HTH_24 PF13412.6 gi|116754066|ref|YP_843184.1| - 1.6e-05 24.3 0.5 8.5e-05 22.0 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|116754066|ref|YP_843184.1| - 8e-05 22.4 0.4 0.00069 19.4 0.0 2.5 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|116754066|ref|YP_843184.1| - 0.0012 18.8 0.0 0.0053 16.8 0.0 2.1 1 1 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|116754066|ref|YP_843184.1| - 0.002 18.0 0.0 0.005 16.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.6 gi|116754066|ref|YP_843184.1| - 0.0089 15.8 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|116754066|ref|YP_843184.1| - 0.009 15.8 0.0 0.027 14.3 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.12 gi|116754066|ref|YP_843184.1| - 0.0097 15.6 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|116754066|ref|YP_843184.1| - 0.022 14.9 0.0 0.21 11.7 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|116754066|ref|YP_843184.1| - 0.039 13.9 0.4 0.15 12.1 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|116754066|ref|YP_843184.1| - 0.042 13.5 0.9 0.58 9.9 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_17 PF12728.7 gi|116754066|ref|YP_843184.1| - 0.043 14.0 0.0 0.17 12.1 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|116754066|ref|YP_843184.1| - 0.082 12.8 0.0 0.22 11.5 0.0 1.7 1 1 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.12 gi|116754066|ref|YP_843184.1| - 0.091 12.5 0.1 0.27 11.0 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 MarR PF01047.22 gi|116754066|ref|YP_843184.1| - 0.096 12.6 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 MarR family GerE PF00196.19 gi|116754066|ref|YP_843184.1| - 0.11 12.1 0.1 0.24 11.0 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_36 PF13730.6 gi|116754066|ref|YP_843184.1| - 0.15 12.0 0.3 0.76 9.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain FMN_red PF03358.15 gi|116754067|ref|YP_843185.1| - 4.8e-33 114.1 0.0 6.3e-33 113.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|116754067|ref|YP_843185.1| - 4.7e-07 29.7 0.0 6.4e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DUF1614 PF07758.11 gi|116754068|ref|YP_843186.1| - 1.2e-57 194.6 15.3 1.2e-57 194.6 15.3 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) His_Phos_1 PF00300.22 gi|116754069|ref|YP_843187.1| - 1e-31 110.2 0.0 1.4e-22 80.3 0.0 2.0 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) NADH-u_ox-rdase PF10785.9 gi|116754070|ref|YP_843188.1| - 0.073 13.8 0.1 0.18 12.5 0.1 1.7 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Glyco_trans_1_3 PF13528.6 gi|116754071|ref|YP_843189.1| - 1.5e-09 37.6 0.0 6e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.16 gi|116754071|ref|YP_843189.1| - 4.7e-05 23.4 0.0 7.1e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_4 PF13439.6 gi|116754071|ref|YP_843189.1| - 0.00013 22.0 0.0 0.0004 20.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|116754071|ref|YP_843189.1| - 0.00061 20.3 0.0 0.0011 19.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain AIRS PF00586.24 gi|116754074|ref|YP_843192.1| - 6e-17 62.1 0.6 1.1e-16 61.3 0.6 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|116754074|ref|YP_843192.1| - 6.6e-17 62.1 0.0 1.3e-16 61.1 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain PP2C PF00481.21 gi|116754074|ref|YP_843192.1| - 0.092 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein phosphatase 2C PHP PF02811.19 gi|116754076|ref|YP_843194.1| - 0.013 15.8 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 0 PHP domain PHP_C PF13263.6 gi|116754076|ref|YP_843194.1| - 0.024 14.4 0.0 0.083 12.7 0.0 1.9 2 0 0 2 2 2 0 PHP-associated DUF530 PF04409.12 gi|116754076|ref|YP_843194.1| - 0.092 11.1 0.1 0.13 10.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF530) DUF11 PF01345.18 gi|116754077|ref|YP_843195.1| - 2.1e-40 136.9 1.4 4.6e-11 42.9 0.4 9.2 9 1 1 10 10 10 5 Domain of unknown function DUF11 bMG10 PF17973.1 gi|116754077|ref|YP_843195.1| - 1e-10 41.9 0.8 0.17 12.1 0.0 7.3 8 1 0 8 8 8 3 Bacterial Alpha-2-macroglobulin MG10 domain Chlam_OMP6 PF03504.13 gi|116754077|ref|YP_843195.1| - 2.4e-09 37.4 0.0 0.49 10.7 0.0 6.0 7 0 0 7 7 7 3 Chlamydia cysteine-rich outer membrane protein 6 CARDB PF07705.11 gi|116754077|ref|YP_843195.1| - 5.3e-08 33.1 5.9 0.01 16.0 0.7 5.3 5 0 0 5 5 5 2 CARDB NPCBM_assoc PF10633.9 gi|116754077|ref|YP_843195.1| - 7.3e-05 22.9 1.3 0.099 12.9 0.1 5.1 5 1 0 5 5 5 1 NPCBM-associated, NEW3 domain of alpha-galactosidase GpcrRhopsn4 PF10192.9 gi|116754077|ref|YP_843195.1| - 1.2 8.4 3.0 1.8 7.9 3.0 1.2 1 0 0 1 1 1 0 Rhodopsin-like GPCR transmembrane domain CitG PF01874.16 gi|116754079|ref|YP_843197.1| - 1.8e-68 231.3 0.1 2e-68 231.1 0.1 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|116754080|ref|YP_843198.1| - 1.5e-52 178.0 0.1 1.7e-52 177.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Cpn60_TCP1 PF00118.24 gi|116754081|ref|YP_843199.1| - 2.4e-188 626.8 21.0 2.7e-188 626.6 21.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TrwC PF08751.11 gi|116754081|ref|YP_843199.1| - 0.01 15.4 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 0 TrwC relaxase BatA PF07584.11 gi|116754082|ref|YP_843200.1| - 3.3e-17 62.6 5.9 3.3e-17 62.6 5.9 1.8 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|116754082|ref|YP_843200.1| - 0.0016 19.1 0.2 0.0045 17.6 0.3 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|116754082|ref|YP_843200.1| - 0.0038 17.2 0.1 0.0079 16.1 0.1 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain MFS_1 PF07690.16 gi|116754082|ref|YP_843200.1| - 0.062 12.2 0.5 0.11 11.4 0.5 1.3 1 0 0 1 1 1 0 Major Facilitator Superfamily VWA_2 PF13519.6 gi|116754083|ref|YP_843201.1| - 3.4e-14 53.4 0.0 1e-13 51.8 0.0 1.9 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|116754083|ref|YP_843201.1| - 6.4e-10 39.6 0.0 3.6e-05 24.1 0.0 2.4 2 0 0 2 2 2 2 von Willebrand factor type A domain GATase1_like PF07090.11 gi|116754083|ref|YP_843201.1| - 2.3e-09 37.0 0.1 1.7e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 Putative glutamine amidotransferase LBP_M PF17385.2 gi|116754083|ref|YP_843201.1| - 0.0031 17.1 0.0 0.18 11.3 0.0 2.2 2 0 0 2 2 2 1 Lacto-N-biose phosphorylase central domain ThuA PF06283.11 gi|116754083|ref|YP_843201.1| - 0.0041 17.3 0.0 0.0066 16.7 0.0 1.3 1 0 0 1 1 1 1 Trehalose utilisation Glyco_hydro_42M PF08532.10 gi|116754083|ref|YP_843201.1| - 0.039 13.5 0.2 7.4 6.0 0.0 2.3 2 0 0 2 2 2 0 Beta-galactosidase trimerisation domain Fibrillarin_2 PF10113.9 gi|116754083|ref|YP_843201.1| - 0.086 11.5 0.0 0.43 9.2 0.0 1.9 2 0 0 2 2 2 0 Fibrillarin-like archaeal protein Mgr1 PF08602.10 gi|116754084|ref|YP_843202.1| - 0.085 11.7 0.0 0.089 11.6 0.0 1.0 1 0 0 1 1 1 0 Mgr1-like, i-AAA protease complex subunit tRNA-synt_1f PF01921.18 gi|116754085|ref|YP_843203.1| - 1e-123 412.8 0.0 1.3e-123 412.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|116754085|ref|YP_843203.1| - 2.4e-07 29.9 0.0 0.0019 17.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|116754085|ref|YP_843203.1| - 0.00032 20.1 0.0 0.62 9.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.25 gi|116754085|ref|YP_843203.1| - 0.28 10.5 0.0 0.43 9.8 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) FmdE PF02663.14 gi|116754086|ref|YP_843204.1| - 5.9e-23 81.4 0.0 6.8e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ABC_tran PF00005.27 gi|116754087|ref|YP_843205.1| - 6.9e-27 94.6 0.0 8.7e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116754087|ref|YP_843205.1| - 6.7e-09 36.0 0.1 0.00073 19.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|116754087|ref|YP_843205.1| - 7.5e-06 26.6 0.0 1e-05 26.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|116754087|ref|YP_843205.1| - 1.9e-05 24.2 0.1 0.059 12.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|116754087|ref|YP_843205.1| - 0.00048 20.5 0.0 0.00092 19.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|116754087|ref|YP_843205.1| - 0.00057 19.6 0.1 0.0018 17.9 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|116754087|ref|YP_843205.1| - 0.003 17.8 0.0 0.083 13.1 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|116754087|ref|YP_843205.1| - 0.0049 16.3 0.0 0.0074 15.7 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|116754087|ref|YP_843205.1| - 0.0053 17.2 0.1 0.71 10.3 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|116754087|ref|YP_843205.1| - 0.0074 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|116754087|ref|YP_843205.1| - 0.017 14.9 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|116754087|ref|YP_843205.1| - 0.017 15.0 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|116754087|ref|YP_843205.1| - 0.023 14.3 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|116754087|ref|YP_843205.1| - 0.039 13.0 0.1 0.071 12.2 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|116754087|ref|YP_843205.1| - 0.04 14.2 0.2 0.098 12.9 0.1 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|116754087|ref|YP_843205.1| - 0.044 13.7 0.0 0.098 12.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain DUF3584 PF12128.8 gi|116754087|ref|YP_843205.1| - 0.059 10.9 0.9 0.079 10.5 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ATP_bind_1 PF03029.17 gi|116754087|ref|YP_843205.1| - 0.075 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|116754087|ref|YP_843205.1| - 0.1 12.2 0.5 0.15 11.6 0.1 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|116754087|ref|YP_843205.1| - 0.11 12.8 0.0 0.22 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|116754087|ref|YP_843205.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|116754087|ref|YP_843205.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|116754087|ref|YP_843205.1| - 0.13 11.0 0.4 2.6 6.7 0.4 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.6 gi|116754087|ref|YP_843205.1| - 0.18 12.1 0.3 0.25 11.7 0.2 1.5 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|116754087|ref|YP_843205.1| - 0.18 11.4 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase NTPase_1 PF03266.15 gi|116754087|ref|YP_843205.1| - 0.19 11.6 0.1 0.4 10.6 0.0 1.6 2 0 0 2 2 2 0 NTPase DLIC PF05783.11 gi|116754087|ref|YP_843205.1| - 0.24 10.2 0.1 0.35 9.7 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ABC-3 PF00950.17 gi|116754088|ref|YP_843206.1| - 1.4e-48 165.6 37.8 1.7e-48 165.4 37.8 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|116754088|ref|YP_843206.1| - 5.4e-07 28.9 40.0 1.8e-06 27.2 40.0 1.7 1 1 0 1 1 1 1 FecCD transport family DUF3482 PF11981.8 gi|116754088|ref|YP_843206.1| - 0.29 10.5 2.4 0.43 9.9 2.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) DUF4213 PF13938.6 gi|116754088|ref|YP_843206.1| - 1.1 9.5 7.0 0.3 11.3 3.7 1.8 2 0 0 2 2 2 0 Putative heavy-metal chelation ADH_N PF08240.12 gi|116754090|ref|YP_843208.1| - 3.1e-33 113.9 0.0 4.7e-33 113.3 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|116754090|ref|YP_843208.1| - 0.00033 20.6 0.0 0.00066 19.7 0.0 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|116754090|ref|YP_843208.1| - 0.0021 19.1 0.0 0.0031 18.6 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DEAD PF00270.29 gi|116754091|ref|YP_843209.1| - 2.5e-33 115.3 0.0 1.7e-32 112.6 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|116754091|ref|YP_843209.1| - 3e-30 105.4 0.0 5.7e-30 104.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|116754091|ref|YP_843209.1| - 4.2e-21 75.4 0.0 4.7e-19 68.8 0.0 3.1 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|116754091|ref|YP_843209.1| - 1.6e-07 31.5 0.0 2.7e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|116754091|ref|YP_843209.1| - 0.00037 20.8 0.0 0.038 14.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain SNF2_N PF00176.23 gi|116754091|ref|YP_843209.1| - 0.0024 16.6 0.0 0.0046 15.7 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain YdjO PF14169.6 gi|116754091|ref|YP_843209.1| - 0.045 13.5 0.7 0.11 12.2 0.7 1.6 1 0 0 1 1 1 0 Cold-inducible protein YdjO AAA_22 PF13401.6 gi|116754091|ref|YP_843209.1| - 0.12 12.6 0.8 1.2 9.4 0.2 2.7 2 1 0 2 2 2 0 AAA domain FliG_N PF14842.6 gi|116754091|ref|YP_843209.1| - 0.14 12.7 0.1 8.4 7.0 0.0 3.3 3 0 0 3 3 3 0 FliG N-terminal domain RNase_HII PF01351.18 gi|116754092|ref|YP_843210.1| - 9.2e-45 152.9 0.1 1.1e-44 152.7 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII Aminotran_5 PF00266.19 gi|116754093|ref|YP_843211.1| - 7.6e-46 156.7 0.0 9.2e-46 156.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|116754093|ref|YP_843211.1| - 0.12 11.7 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family CMD PF02627.20 gi|116754094|ref|YP_843212.1| - 1e-14 54.3 3.7 1.3e-14 54.0 3.7 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Putative_PNPOx PF01243.20 gi|116754095|ref|YP_843213.1| - 4e-15 55.8 0.0 8.1e-15 54.8 0.0 1.5 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.12 gi|116754095|ref|YP_843213.1| - 0.0025 17.6 0.1 0.0036 17.1 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF447) Pyridox_ox_2 PF12900.7 gi|116754095|ref|YP_843213.1| - 0.0026 17.7 0.0 0.0035 17.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase SSXT PF05030.12 gi|116754095|ref|YP_843213.1| - 0.0032 17.1 0.2 0.71 9.6 0.0 2.5 2 0 0 2 2 2 2 SSXT protein (N-terminal region) Pyrid_ox_like PF16242.5 gi|116754095|ref|YP_843213.1| - 0.026 14.1 0.2 0.035 13.7 0.2 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like MMS1_N PF10433.9 gi|116754095|ref|YP_843213.1| - 0.034 12.8 0.1 0.039 12.6 0.1 1.1 1 0 0 1 1 1 0 Mono-functional DNA-alkylating methyl methanesulfonate N-term SBP_bac_5 PF00496.22 gi|116754096|ref|YP_843214.1| - 4e-81 272.9 0.6 5.3e-81 272.5 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rap1a PF18602.1 gi|116754096|ref|YP_843214.1| - 0.052 13.9 0.0 0.36 11.2 0.0 2.3 2 0 0 2 2 2 0 Rap1a immunity proteins NosD PF05048.13 gi|116754098|ref|YP_843216.1| - 1.8e-67 227.1 93.1 7.6e-32 110.5 32.3 4.0 2 1 3 5 5 5 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|116754098|ref|YP_843216.1| - 4.2e-49 166.4 76.4 9.6e-21 74.3 25.4 4.4 1 1 3 4 4 4 4 Right handed beta helix region Pectinesterase PF01095.19 gi|116754098|ref|YP_843216.1| - 0.0087 14.8 0.0 0.017 13.9 0.0 1.5 1 0 0 1 1 1 1 Pectinesterase Pectate_lyase_3 PF12708.7 gi|116754098|ref|YP_843216.1| - 0.15 11.9 40.0 0.031 14.1 4.0 4.8 2 2 2 4 4 4 0 Pectate lyase superfamily protein Aconitase PF00330.20 gi|116754099|ref|YP_843217.1| - 4.9e-95 319.2 0.2 6.3e-93 312.3 0.2 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|116754099|ref|YP_843217.1| - 0.045 12.5 0.0 0.089 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF521) PHP_C PF13263.6 gi|116754100|ref|YP_843218.1| - 1.7e-15 56.5 2.1 2.7e-15 55.9 0.1 2.3 3 0 0 3 3 3 1 PHP-associated PHP PF02811.19 gi|116754100|ref|YP_843218.1| - 1.1e-12 48.6 0.0 1.3e-12 48.3 0.0 1.3 1 1 0 1 1 1 1 PHP domain CBS PF00571.28 gi|116754100|ref|YP_843218.1| - 0.76 10.3 3.0 17 5.9 0.0 3.5 4 1 0 4 4 4 0 CBS domain CTP_transf_like PF01467.26 gi|116754101|ref|YP_843219.1| - 1.7e-18 67.2 0.0 2e-18 67.0 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|116754101|ref|YP_843219.1| - 5.3e-06 26.4 0.0 9e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 FAD synthetase PTS_IIB PF02302.17 gi|116754101|ref|YP_843219.1| - 0.0072 17.0 0.0 0.016 15.9 0.0 1.5 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit HIGH_NTase1 PF05636.11 gi|116754101|ref|YP_843219.1| - 0.17 11.1 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase CTP_transf_like PF01467.26 gi|116754102|ref|YP_843220.1| - 4.9e-20 72.2 0.0 5.5e-20 72.0 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like Prok-JAB PF14464.6 gi|116754103|ref|YP_843221.1| - 1.4e-08 34.5 0.3 3.1e-08 33.4 0.3 1.6 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|116754103|ref|YP_843221.1| - 0.18 11.8 0.1 0.29 11.1 0.1 1.3 1 0 0 1 1 1 0 RadC-like JAB domain BPL_LplA_LipB PF03099.19 gi|116754104|ref|YP_843222.1| - 1e-19 70.7 0.0 1.6e-19 70.1 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|116754104|ref|YP_843222.1| - 7e-13 48.3 0.0 1.7e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|116754104|ref|YP_843222.1| - 3e-08 33.4 0.3 6.6e-08 32.3 0.3 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 gi|116754104|ref|YP_843222.1| - 4.2e-06 26.4 0.0 6.4e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_24 PF13412.6 gi|116754104|ref|YP_843222.1| - 0.015 14.9 0.0 0.038 13.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CPSase_L_D2 PF02786.17 gi|116754105|ref|YP_843223.1| - 1e-76 257.1 0.0 1.5e-76 256.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|116754105|ref|YP_843223.1| - 3.4e-48 162.8 0.2 6.3e-47 158.7 0.1 2.5 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|116754105|ref|YP_843223.1| - 1e-43 147.8 0.0 2e-43 146.9 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|116754105|ref|YP_843223.1| - 2.5e-12 46.8 0.0 5.2e-12 45.7 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|116754105|ref|YP_843223.1| - 4.5e-06 26.3 0.0 1.2e-05 25.0 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|116754105|ref|YP_843223.1| - 6e-06 26.4 0.0 1.8e-05 24.8 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|116754105|ref|YP_843223.1| - 0.014 15.0 0.0 0.035 13.7 0.0 1.7 1 1 0 1 1 1 0 ATP-grasp domain DUF1611_N PF17396.2 gi|116754105|ref|YP_843223.1| - 0.021 15.1 0.0 0.81 10.0 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1611_N) Rossmann-like domain ATPgrasp_Ter PF15632.6 gi|116754105|ref|YP_843223.1| - 0.047 13.4 0.0 0.092 12.5 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_5 PF13549.6 gi|116754105|ref|YP_843223.1| - 0.082 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|116754105|ref|YP_843223.1| - 0.16 11.1 0.0 0.4 9.9 0.0 1.5 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Glyco_transf_20 PF00982.21 gi|116754107|ref|YP_843225.1| - 0.021 13.5 0.0 0.023 13.4 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase family 20 Ibs_toxin PF13956.6 gi|116754107|ref|YP_843225.1| - 1.6 8.8 3.8 2.6 8.1 3.8 1.3 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system Glycos_transf_1 PF00534.20 gi|116754108|ref|YP_843226.1| - 1.7e-22 79.8 0.0 3.7e-22 78.7 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|116754108|ref|YP_843226.1| - 2.2e-10 41.1 0.0 3.9e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|116754108|ref|YP_843226.1| - 6.4e-06 26.5 0.0 1.2e-05 25.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|116754110|ref|YP_843228.1| - 1.6e-149 498.7 0.0 2e-149 498.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.16 gi|116754110|ref|YP_843228.1| - 1.4e-52 178.1 0.0 3.5e-52 176.9 0.0 1.6 1 0 0 1 1 1 1 Trehalose-phosphatase Glycos_transf_1 PF00534.20 gi|116754110|ref|YP_843228.1| - 1.3e-05 24.8 0.1 0.00029 20.4 0.1 2.4 1 1 0 1 1 1 1 Glycosyl transferases group 1 Hydrolase_3 PF08282.12 gi|116754110|ref|YP_843228.1| - 2.5e-05 24.1 0.0 0.0043 16.8 0.0 2.4 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|116754110|ref|YP_843228.1| - 0.0018 17.9 0.0 0.011 15.3 0.0 2.1 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Glyco_trans_1_4 PF13692.6 gi|116754110|ref|YP_843228.1| - 0.015 15.7 0.0 0.04 14.3 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferases group 1 TryThrA_C PF12319.8 gi|116754110|ref|YP_843228.1| - 0.069 12.6 1.0 0.13 11.7 1.0 1.4 1 0 0 1 1 1 0 Tryptophan-Threonine-rich plasmodium antigen C terminal Glyco_transf_5 PF08323.11 gi|116754110|ref|YP_843228.1| - 0.13 11.9 0.2 0.24 11.1 0.2 1.4 1 0 0 1 1 1 0 Starch synthase catalytic domain UMPH-1 PF05822.12 gi|116754110|ref|YP_843228.1| - 0.17 11.4 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) DEAD PF00270.29 gi|116754111|ref|YP_843229.1| - 8e-26 90.9 0.0 2.6e-24 86.0 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|116754111|ref|YP_843229.1| - 1.8e-12 47.7 1.1 6.7e-12 45.8 0.8 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|116754111|ref|YP_843229.1| - 3.7e-09 36.8 0.0 6.3e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|116754111|ref|YP_843229.1| - 6.9e-08 32.8 0.0 4.2e-07 30.3 0.0 2.3 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|116754111|ref|YP_843229.1| - 2.1e-07 30.6 0.0 8.2e-07 28.8 0.0 2.0 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|116754111|ref|YP_843229.1| - 0.0006 19.9 0.0 0.0032 17.5 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif ATPase PF06745.13 gi|116754111|ref|YP_843229.1| - 0.024 14.0 0.0 0.15 11.4 0.0 2.2 2 1 0 2 2 2 0 KaiC SecA_DEAD PF07517.14 gi|116754111|ref|YP_843229.1| - 0.032 13.5 0.0 0.092 12.0 0.0 1.7 2 0 0 2 2 2 0 SecA DEAD-like domain Cdd1 PF11731.8 gi|116754111|ref|YP_843229.1| - 0.044 14.0 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus HHH PF00633.23 gi|116754111|ref|YP_843229.1| - 0.11 12.4 0.8 0.87 9.6 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif Aminotran_1_2 PF00155.21 gi|116754112|ref|YP_843230.1| - 1e-58 199.3 0.0 1.2e-58 199.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|116754112|ref|YP_843230.1| - 0.061 12.6 0.0 0.099 11.9 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase tRNA-synt_1 PF00133.22 gi|116754113|ref|YP_843231.1| - 6.7e-59 199.7 0.0 2.4e-42 145.0 0.0 3.0 3 0 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|116754113|ref|YP_843231.1| - 6.9e-23 81.0 0.0 1.4e-10 40.5 0.0 3.2 3 0 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|116754113|ref|YP_843231.1| - 3.9e-21 75.6 0.1 7.8e-21 74.6 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|116754113|ref|YP_843231.1| - 1.9e-07 30.8 0.0 3.9e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|116754113|ref|YP_843231.1| - 1.4e-06 27.9 0.0 8e-05 22.1 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.19 gi|116754113|ref|YP_843231.1| - 0.024 13.6 0.0 0.044 12.7 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (R) HTH_29 PF13551.6 gi|116754113|ref|YP_843231.1| - 0.062 13.3 0.0 0.18 11.8 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix CPSase_L_D3 PF02787.19 gi|116754113|ref|YP_843231.1| - 0.091 13.1 0.2 0.28 11.5 0.2 1.9 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain tRNA-synt_1f PF01921.18 gi|116754113|ref|YP_843231.1| - 0.14 11.0 0.0 0.32 9.9 0.0 1.6 1 0 0 1 1 1 0 tRNA synthetases class I (K) DJ-1_PfpI PF01965.24 gi|116754114|ref|YP_843232.1| - 4.8e-52 176.1 0.4 5.5e-52 175.9 0.4 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|116754114|ref|YP_843232.1| - 0.0002 21.0 0.0 0.00026 20.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain PS_pyruv_trans PF04230.13 gi|116754114|ref|YP_843232.1| - 0.22 11.4 0.0 0.25 11.2 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide pyruvyl transferase HTH_20 PF12840.7 gi|116754115|ref|YP_843233.1| - 1.1e-07 31.8 0.2 1.6e-07 31.3 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.12 gi|116754115|ref|YP_843233.1| - 0.0014 19.0 0.1 0.0032 17.8 0.0 1.7 2 0 0 2 2 2 1 FaeA-like protein HTH_12 PF08461.10 gi|116754115|ref|YP_843233.1| - 0.029 14.3 0.3 0.042 13.8 0.3 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|116754115|ref|YP_843233.1| - 0.049 13.6 0.0 0.071 13.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HSP20 PF00011.21 gi|116754116|ref|YP_843234.1| - 1.5e-11 44.3 2.0 4.7e-10 39.5 2.0 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|116754116|ref|YP_843234.1| - 2.7e-06 26.8 0.1 4e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA PIH1_CS PF18201.1 gi|116754116|ref|YP_843234.1| - 0.00039 20.8 0.1 0.0006 20.2 0.1 1.3 1 0 0 1 1 1 1 PIH1 CS-like domain FKBP26_C PF18046.1 gi|116754116|ref|YP_843234.1| - 0.0047 17.0 0.4 0.015 15.4 0.2 1.9 1 1 1 2 2 2 1 FKBP26_C-terminal CS PF04969.16 gi|116754116|ref|YP_843234.1| - 0.0053 17.7 0.3 0.0091 17.0 0.3 1.4 1 0 0 1 1 1 1 CS domain Ribo_biogen_C PF04034.13 gi|116754117|ref|YP_843235.1| - 6.6e-46 155.2 0.0 7.8e-46 154.9 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|116754117|ref|YP_843235.1| - 9.9e-15 54.1 0.1 1.5e-14 53.5 0.1 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI tRNA-synt_1 PF00133.22 gi|116754118|ref|YP_843236.1| - 6.2e-135 450.8 0.5 2.2e-133 445.7 0.5 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|116754118|ref|YP_843236.1| - 1.7e-37 128.7 0.0 3.2e-37 127.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|116754118|ref|YP_843236.1| - 2.6e-23 82.4 0.3 2e-14 53.2 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|116754118|ref|YP_843236.1| - 9e-07 28.5 0.0 0.0058 16.0 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|116754118|ref|YP_843236.1| - 0.00054 19.5 0.0 0.0017 17.9 0.0 1.8 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 CYTH PF01928.21 gi|116754119|ref|YP_843237.1| - 2.4e-31 109.1 0.5 2.9e-31 108.8 0.5 1.1 1 0 0 1 1 1 1 CYTH domain DUF963 PF06131.11 gi|116754119|ref|YP_843237.1| - 0.15 11.5 1.4 0.33 10.4 1.4 1.5 1 0 0 1 1 1 0 Schizosaccharomyces pombe repeat of unknown function (DUF963) MTD PF01993.18 gi|116754120|ref|YP_843238.1| - 1.9e-122 407.9 1.1 2.1e-122 407.7 1.1 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Glyco_transf_4 PF13439.6 gi|116754120|ref|YP_843238.1| - 0.17 11.9 0.0 4.5 7.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Se-cys_synth_N PF12390.8 gi|116754120|ref|YP_843238.1| - 5.9 7.2 6.4 1.1 9.5 2.2 2.1 2 0 0 2 2 2 0 Selenocysteine synthase N terminal LTD PF00932.19 gi|116754121|ref|YP_843239.1| - 5.2e-11 42.9 0.0 8.3e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Lamin Tail Domain HEAT_2 PF13646.6 gi|116754122|ref|YP_843240.1| - 2.9e-43 146.2 5.4 1.1e-17 64.1 0.0 3.1 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.16 gi|116754122|ref|YP_843240.1| - 2.1e-38 127.0 7.4 1.3e-07 31.6 0.1 5.3 5 0 0 5 5 5 5 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|116754122|ref|YP_843240.1| - 7.8e-26 87.9 2.2 0.00051 20.1 0.0 6.1 6 0 0 6 6 6 5 HEAT repeat HEAT_EZ PF13513.6 gi|116754122|ref|YP_843240.1| - 2.6e-18 66.1 8.0 0.0038 17.7 0.2 5.5 6 0 0 6 6 6 5 HEAT-like repeat Arm PF00514.23 gi|116754122|ref|YP_843240.1| - 3.6e-16 58.6 4.3 0.0024 17.9 0.1 5.3 1 1 4 5 5 5 5 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|116754122|ref|YP_843240.1| - 1.1e-07 32.1 0.0 0.0039 17.3 0.0 4.2 1 1 2 3 3 3 3 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.7 gi|116754122|ref|YP_843240.1| - 3.1e-05 24.5 0.0 2.9 8.6 0.0 4.6 1 1 4 5 5 5 1 Vacuolar 14 Fab1-binding region ERAP1_C PF11838.8 gi|116754122|ref|YP_843240.1| - 7.8e-05 22.4 0.0 0.039 13.5 0.0 2.1 1 1 1 2 2 2 2 ERAP1-like C-terminal domain Adaptin_N PF01602.20 gi|116754122|ref|YP_843240.1| - 0.00028 19.6 0.0 0.019 13.5 0.0 2.2 1 1 1 2 2 2 2 Adaptin N terminal region Aconitase_B_N PF11791.8 gi|116754122|ref|YP_843240.1| - 0.0061 16.6 0.1 0.17 12.0 0.1 2.5 1 1 1 2 2 2 1 Aconitate B N-terminal domain RasGEF_N_2 PF14663.6 gi|116754122|ref|YP_843240.1| - 0.011 16.2 0.2 3 8.3 0.0 3.4 2 2 2 4 4 4 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain DUF3385 PF11865.8 gi|116754122|ref|YP_843240.1| - 0.018 14.9 0.0 3 7.7 0.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF3385) PHP PF02811.19 gi|116754123|ref|YP_843241.1| - 5.8e-11 43.0 0.1 9.3e-11 42.3 0.1 1.4 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|116754123|ref|YP_843241.1| - 9.6e-06 25.2 0.0 1.8e-05 24.3 0.0 1.7 1 1 0 1 1 1 1 RNase P subunit p30 Pox_VLTF3 PF04947.14 gi|116754123|ref|YP_843241.1| - 0.2 11.4 0.0 0.39 10.4 0.0 1.4 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like DUF4010 PF13194.6 gi|116754124|ref|YP_843242.1| - 5e-59 199.5 24.2 5e-59 199.5 24.2 3.3 3 1 1 4 4 4 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|116754124|ref|YP_843242.1| - 3.8e-15 56.3 14.5 3.8e-15 56.3 14.5 3.5 3 1 0 3 3 3 1 MgtC family EamA PF00892.20 gi|116754125|ref|YP_843243.1| - 0.00013 22.1 7.1 0.00013 22.1 7.1 2.6 2 1 0 2 2 2 2 EamA-like transporter family DUF1616 PF07760.11 gi|116754126|ref|YP_843244.1| - 1.7e-23 83.5 3.9 4.5e-23 82.1 3.9 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) Big_7 PF17957.1 gi|116754126|ref|YP_843244.1| - 5.7e-10 39.8 29.2 0.25 12.2 0.1 8.5 9 0 0 9 9 9 5 Bacterial Ig domain BiPBP_C PF06832.12 gi|116754126|ref|YP_843244.1| - 1.1e-08 35.0 8.2 2.7 8.1 0.0 7.2 7 0 0 7 7 7 4 Penicillin-Binding Protein C-terminus Family CE2_N PF17996.1 gi|116754126|ref|YP_843244.1| - 4.3e-08 33.1 0.0 2.8 8.0 0.0 5.9 6 0 0 6 6 6 3 Carbohydrate esterase 2 N-terminal DUF4399 PF14347.6 gi|116754126|ref|YP_843244.1| - 1e-05 25.8 1.2 3 8.3 0.0 6.0 7 0 0 7 7 7 1 Domain of unknown function (DUF4399) Bac_rhamnosid_N PF08531.10 gi|116754126|ref|YP_843244.1| - 3.1e-05 23.9 0.0 0.089 12.6 0.0 3.5 3 1 0 3 3 3 2 Alpha-L-rhamnosidase N-terminal domain Y_Y_Y PF07495.13 gi|116754126|ref|YP_843244.1| - 0.00023 21.0 0.0 0.3 11.1 0.0 3.8 4 0 0 4 4 4 1 Y_Y_Y domain DUF755 PF05501.11 gi|116754126|ref|YP_843244.1| - 0.0032 17.7 2.0 0.008 16.4 2.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF755) TcfC PF16967.5 gi|116754126|ref|YP_843244.1| - 0.067 12.7 0.0 13 5.4 0.0 3.6 3 0 0 3 3 3 0 E-set like domain DUF5643 PF18705.1 gi|116754127|ref|YP_843245.1| - 0.0014 18.5 0.0 0.039 13.9 0.0 2.2 1 1 0 2 2 2 2 Family of unknown function (DUF5643) PGK PF00162.19 gi|116754128|ref|YP_843246.1| - 1.7e-110 369.6 0.1 1.9e-110 369.4 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DHH PF01368.20 gi|116754129|ref|YP_843247.1| - 5.3e-11 42.6 0.1 8.1e-11 42.1 0.1 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|116754129|ref|YP_843247.1| - 4.6e-07 30.3 3.1 5.9e-07 30.0 1.8 1.8 2 0 0 2 2 2 1 DHHA1 domain TrkA_N PF02254.18 gi|116754130|ref|YP_843248.1| - 3.8e-49 165.8 1.8 1.1e-23 83.6 0.0 2.3 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|116754130|ref|YP_843248.1| - 4.5e-24 84.1 2.5 3.4e-14 52.4 0.1 3.0 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|116754130|ref|YP_843248.1| - 2.2e-09 37.7 0.9 8.1e-05 23.0 0.2 2.6 3 0 0 3 3 2 2 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|116754130|ref|YP_843248.1| - 1.9e-05 24.1 0.3 0.0018 17.6 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|116754130|ref|YP_843248.1| - 5.3e-05 23.7 1.5 0.0095 16.5 0.1 2.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|116754130|ref|YP_843248.1| - 8.9e-05 21.9 1.2 0.21 10.9 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|116754130|ref|YP_843248.1| - 0.00011 21.6 0.4 0.01 15.1 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 gi|116754130|ref|YP_843248.1| - 0.00038 20.4 0.6 0.83 9.5 0.0 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1188 PF06690.11 gi|116754130|ref|YP_843248.1| - 0.00053 19.6 0.9 0.034 13.7 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1188) Shikimate_DH PF01488.20 gi|116754130|ref|YP_843248.1| - 0.00067 19.7 1.0 0.13 12.3 0.3 2.4 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|116754130|ref|YP_843248.1| - 0.00076 20.0 0.2 0.69 10.5 0.0 2.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.6 gi|116754130|ref|YP_843248.1| - 0.0011 19.2 0.1 0.021 15.1 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Ldh_1_N PF00056.23 gi|116754130|ref|YP_843248.1| - 0.0023 18.0 1.0 0.66 10.1 0.2 2.5 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|116754130|ref|YP_843248.1| - 0.0036 17.6 1.7 0.011 16.0 0.4 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain XdhC_C PF13478.6 gi|116754130|ref|YP_843248.1| - 0.0043 17.5 0.2 4.1 7.9 0.1 2.6 2 1 0 2 2 2 2 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 gi|116754130|ref|YP_843248.1| - 0.0095 15.5 0.7 2.9 7.4 0.0 2.6 3 0 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.21 gi|116754130|ref|YP_843248.1| - 0.011 15.2 0.4 0.58 9.6 0.0 2.3 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family ApbA PF02558.16 gi|116754130|ref|YP_843248.1| - 0.013 15.1 0.2 5.6 6.6 0.0 2.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 gi|116754130|ref|YP_843248.1| - 0.025 14.5 0.3 0.77 9.6 0.2 2.4 2 0 0 2 2 2 0 NAD(P)H-binding 2-Hacid_dh_C PF02826.19 gi|116754130|ref|YP_843248.1| - 0.08 12.3 0.0 3.5 6.9 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.9 gi|116754130|ref|YP_843248.1| - 0.12 12.2 0.3 2 8.3 0.3 2.4 2 0 0 2 2 2 0 Rossmann-like domain GTP_EFTU PF00009.27 gi|116754131|ref|YP_843249.1| - 1.9e-63 213.6 0.0 3.2e-63 212.8 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|116754131|ref|YP_843249.1| - 8.9e-28 96.5 0.4 7.7e-27 93.5 0.2 2.8 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|116754131|ref|YP_843249.1| - 7.5e-25 86.8 0.6 2.1e-24 85.4 0.1 2.1 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|116754131|ref|YP_843249.1| - 1.2e-24 86.2 1.9 1.8e-24 85.6 0.6 2.1 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|116754131|ref|YP_843249.1| - 2.1e-14 53.6 0.8 5.6e-14 52.3 0.8 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|116754131|ref|YP_843249.1| - 0.001 19.1 0.0 0.0024 17.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF3748 PF12566.8 gi|116754131|ref|YP_843249.1| - 0.02 14.9 0.0 0.069 13.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3748) RF3_C PF16658.5 gi|116754131|ref|YP_843249.1| - 0.028 14.2 0.0 0.067 13.0 0.0 1.6 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain DUF2888 PF11135.8 gi|116754131|ref|YP_843249.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2888) Ras PF00071.22 gi|116754131|ref|YP_843249.1| - 0.14 11.7 0.0 0.4 10.2 0.0 1.7 2 0 0 2 2 2 0 Ras family FliH PF02108.16 gi|116754131|ref|YP_843249.1| - 2.8 8.0 4.3 8.7 6.4 0.2 3.0 3 0 0 3 3 3 0 Flagellar assembly protein FliH GTP_EFTU PF00009.27 gi|116754132|ref|YP_843250.1| - 1.1e-57 194.8 0.0 1.7e-57 194.1 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|116754132|ref|YP_843250.1| - 1.5e-39 134.8 0.6 4.8e-39 133.1 0.2 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|116754132|ref|YP_843250.1| - 1.1e-15 57.7 1.7 2.9e-15 56.4 0.4 2.4 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|116754132|ref|YP_843250.1| - 8.8e-07 29.0 0.0 1.9e-05 24.7 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|116754132|ref|YP_843250.1| - 0.0012 18.7 0.6 0.0034 17.3 0.6 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.12 gi|116754132|ref|YP_843250.1| - 0.0026 17.2 0.0 0.034 13.5 0.0 2.1 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region FeoB_N PF02421.18 gi|116754132|ref|YP_843250.1| - 0.052 13.1 0.1 0.42 10.1 0.1 2.3 2 1 0 2 2 2 0 Ferrous iron transport protein B NTP_transf_3 PF12804.7 gi|116754132|ref|YP_843250.1| - 0.066 13.6 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 MobA-like NTP transferase domain Dynamin_N PF00350.23 gi|116754132|ref|YP_843250.1| - 0.11 12.6 0.0 9.5 6.2 0.0 2.5 1 1 1 2 2 2 0 Dynamin family Roc PF08477.13 gi|116754132|ref|YP_843250.1| - 0.15 12.3 0.1 23 5.3 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Ribosomal_S10 PF00338.22 gi|116754133|ref|YP_843251.1| - 5.2e-26 90.7 0.0 5.8e-26 90.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|116754133|ref|YP_843251.1| - 0.016 16.0 0.0 0.035 14.9 0.0 1.5 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain MMR_HSR1 PF01926.23 gi|116754134|ref|YP_843252.1| - 4.6e-16 58.9 0.0 5.9e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|116754134|ref|YP_843252.1| - 1.8e-11 43.8 0.0 1.8e-10 40.5 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|116754134|ref|YP_843252.1| - 3.2e-05 24.0 0.0 0.0064 16.6 0.0 2.1 1 1 1 2 2 2 2 Dynamin family RsgA_GTPase PF03193.16 gi|116754134|ref|YP_843252.1| - 0.00049 20.0 0.0 0.049 13.5 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase GTP_EFTU PF00009.27 gi|116754134|ref|YP_843252.1| - 0.00053 19.6 0.0 0.034 13.7 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|116754134|ref|YP_843252.1| - 0.0033 17.1 0.0 0.84 9.2 0.0 2.1 2 0 0 2 2 2 2 Ras family ABC_tran PF00005.27 gi|116754134|ref|YP_843252.1| - 0.0085 16.6 0.0 0.0098 16.4 0.0 1.5 1 1 0 1 1 1 1 ABC transporter Roc PF08477.13 gi|116754134|ref|YP_843252.1| - 0.013 15.7 0.0 0.023 14.9 0.0 1.7 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_21 PF13304.6 gi|116754134|ref|YP_843252.1| - 0.016 15.0 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system SRPRB PF09439.10 gi|116754134|ref|YP_843252.1| - 0.033 13.6 0.0 0.048 13.1 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit PduV-EutP PF10662.9 gi|116754134|ref|YP_843252.1| - 0.044 13.5 0.0 0.079 12.7 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 gi|116754134|ref|YP_843252.1| - 0.063 13.8 0.0 0.48 11.0 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|116754134|ref|YP_843252.1| - 0.15 11.8 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arf PF00025.21 gi|116754134|ref|YP_843252.1| - 0.18 11.2 0.0 0.34 10.3 0.0 1.5 2 0 0 2 2 2 0 ADP-ribosylation factor family Septin PF00735.18 gi|116754134|ref|YP_843252.1| - 0.19 11.0 0.0 2.9 7.1 0.0 2.0 2 0 0 2 2 2 0 Septin WIYLD PF10440.9 gi|116754135|ref|YP_843253.1| - 0.028 14.2 0.0 0.059 13.2 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain DapB_C PF05173.14 gi|116754136|ref|YP_843254.1| - 7.1e-44 148.7 0.1 9.7e-44 148.3 0.1 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|116754136|ref|YP_843254.1| - 2.7e-28 98.6 0.1 5.1e-28 97.7 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|116754136|ref|YP_843254.1| - 0.037 14.3 0.5 0.2 11.9 0.0 2.2 3 0 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain DHDPS PF00701.22 gi|116754137|ref|YP_843255.1| - 6.2e-98 327.1 0.0 7e-98 326.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family YjgF_endoribonc PF14588.6 gi|116754137|ref|YP_843255.1| - 0.093 12.9 0.1 0.27 11.4 0.0 1.8 2 0 0 2 2 2 0 YjgF/chorismate_mutase-like, putative endoribonuclease Ribosomal_S17e PF00833.18 gi|116754138|ref|YP_843256.1| - 4.3e-12 46.0 0.2 5e-12 45.8 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 Phos_pyr_kin PF08543.12 gi|116754139|ref|YP_843257.1| - 1.5e-83 280.0 0.4 1.9e-83 279.7 0.4 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|116754139|ref|YP_843257.1| - 5.4e-65 218.0 0.3 8.8e-65 217.3 0.3 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|116754139|ref|YP_843257.1| - 9.8e-12 44.8 0.3 2.2e-11 43.6 0.3 1.4 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Clathrin_H_link PF13838.6 gi|116754140|ref|YP_843258.1| - 5.9e-08 32.5 10.2 0.088 12.7 0.6 4.9 2 2 3 5 5 5 3 Clathrin-H-link LPD22 PF18834.1 gi|116754140|ref|YP_843258.1| - 0.0074 16.5 1.2 4.2 7.6 0.1 3.6 1 1 3 4 4 4 1 Large polyvalent protein associated domain 22 Ribosomal_S21 PF01165.20 gi|116754140|ref|YP_843258.1| - 0.0082 15.8 4.9 0.27 11.0 0.1 3.3 3 0 0 3 3 3 1 Ribosomal protein S21 TFIIB PF00382.19 gi|116754140|ref|YP_843258.1| - 0.011 15.8 1.0 0.33 11.0 0.1 3.4 4 0 0 4 4 4 0 Transcription factor TFIIB repeat E3_UFM1_ligase PF09743.9 gi|116754140|ref|YP_843258.1| - 0.024 14.2 0.0 8.4 5.9 0.0 2.5 1 1 0 2 2 2 0 E3 UFM1-protein ligase 1 TPR_7 PF13176.6 gi|116754140|ref|YP_843258.1| - 0.034 14.2 0.7 29 5.0 0.0 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat PHF12_MRG_bd PF16737.5 gi|116754140|ref|YP_843258.1| - 0.045 13.5 0.1 18 5.2 0.0 3.3 3 0 0 3 3 3 0 PHD finger protein 12 MRG binding domain DnaB_2 PF07261.11 gi|116754140|ref|YP_843258.1| - 0.05 13.3 0.0 6 6.7 0.0 3.0 2 1 1 3 3 3 0 Replication initiation and membrane attachment DUF5024 PF16427.5 gi|116754140|ref|YP_843258.1| - 0.054 13.8 0.4 8.9 6.7 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF5024) Utp13 PF08625.11 gi|116754140|ref|YP_843258.1| - 0.11 12.4 0.1 2.7 7.9 0.0 2.4 3 0 0 3 3 3 0 Utp13 specific WD40 associated domain PPR PF01535.20 gi|116754140|ref|YP_843258.1| - 0.15 12.4 1.1 24 5.5 0.0 2.7 2 0 0 2 2 2 0 PPR repeat DUF61 PF01886.16 gi|116754141|ref|YP_843259.1| - 9.8e-45 151.7 0.4 1.1e-44 151.5 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Nop PF01798.18 gi|116754142|ref|YP_843260.1| - 1.6e-43 148.8 0.1 2.6e-43 148.1 0.1 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin HIT PF01230.23 gi|116754143|ref|YP_843261.1| - 2.3e-14 53.9 0.0 3.3e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|116754143|ref|YP_843261.1| - 6.8e-11 42.7 0.0 9.1e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|116754143|ref|YP_843261.1| - 2.6e-05 24.1 0.0 3.4e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Enolase_C PF00113.22 gi|116754144|ref|YP_843262.1| - 4.6e-109 364.2 0.0 5.7e-109 363.9 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|116754144|ref|YP_843262.1| - 7.5e-62 207.3 0.0 2.4e-61 205.6 0.0 1.8 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|116754144|ref|YP_843262.1| - 2.9e-05 23.7 0.0 7.9e-05 22.3 0.0 1.8 2 1 1 3 3 3 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|116754144|ref|YP_843262.1| - 0.011 15.0 0.0 0.048 12.8 0.0 1.8 2 0 0 2 2 2 0 Methylaspartate ammonia-lyase C-terminus DUF5050 PF16472.5 gi|116754145|ref|YP_843263.1| - 5e-11 42.4 11.6 0.0033 16.7 1.1 5.5 5 1 1 6 6 6 5 Domain of unknown function (DUF5050) PD40 PF07676.12 gi|116754145|ref|YP_843263.1| - 5.4e-10 39.0 74.4 0.62 10.1 0.4 19.5 22 0 0 22 22 22 7 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|116754145|ref|YP_843263.1| - 6.2e-06 25.2 22.9 0.063 12.0 0.1 8.7 4 4 4 10 10 10 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.6 gi|116754145|ref|YP_843263.1| - 4.3e-05 22.4 4.3 0.35 9.5 0.1 5.5 4 2 2 6 6 6 2 Oligogalacturonate lyase PQQ_3 PF13570.6 gi|116754145|ref|YP_843263.1| - 0.00039 20.8 4.3 0.0087 16.5 0.0 5.5 6 0 0 6 6 6 1 PQQ-like domain PQQ PF01011.21 gi|116754145|ref|YP_843263.1| - 0.0092 15.9 12.4 5.4 7.1 0.0 8.8 8 0 0 8 8 8 1 PQQ enzyme repeat DUF2606 PF10794.9 gi|116754145|ref|YP_843263.1| - 8 6.2 23.7 0.35 10.6 0.1 7.2 7 2 1 8 8 8 0 Protein of unknown function (DUF2606) phage_tail_N PF08400.10 gi|116754145|ref|YP_843263.1| - 9.4 6.2 18.0 1.3 9.0 0.1 5.5 6 1 1 7 7 7 0 Prophage tail fibre N-terminal CobN-Mg_chel PF02514.16 gi|116754146|ref|YP_843264.1| - 0 1062.2 0.0 0 1062.0 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF2281 PF10047.9 gi|116754146|ref|YP_843264.1| - 0.15 12.7 0.0 0.54 11.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2281) Peripla_BP_2 PF01497.18 gi|116754147|ref|YP_843265.1| - 1.2e-18 67.5 0.0 1.7e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein EF1_GNE PF00736.19 gi|116754148|ref|YP_843266.1| - 1.4e-19 70.0 0.5 1.5e-19 69.9 0.5 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.26 gi|116754148|ref|YP_843266.1| - 0.052 14.0 1.5 0.33 11.4 0.2 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF1610 PF07754.11 gi|116754149|ref|YP_843267.1| - 1.1e-06 28.5 5.7 1.1e-06 28.5 5.7 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) Zn_Tnp_IS91 PF14319.6 gi|116754149|ref|YP_843267.1| - 0.0032 17.5 6.2 0.005 16.9 6.2 1.3 1 1 0 1 1 1 1 Transposase zinc-binding domain C1_2 PF03107.16 gi|116754149|ref|YP_843267.1| - 0.024 15.0 9.2 0.38 11.1 4.8 2.2 1 1 1 2 2 2 0 C1 domain Rhodanese_C PF12368.8 gi|116754149|ref|YP_843267.1| - 0.1 13.0 8.5 0.086 13.2 7.7 1.4 1 1 0 1 1 1 0 Rhodanase C-terminal FYVE_2 PF02318.16 gi|116754149|ref|YP_843267.1| - 0.11 12.8 4.5 0.13 12.5 4.5 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-ACC PF17848.1 gi|116754149|ref|YP_843267.1| - 0.17 12.0 14.8 0.67 10.1 0.1 4.0 2 1 1 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf-Mss51 PF13824.6 gi|116754149|ref|YP_843267.1| - 0.17 12.0 10.1 8.7 6.5 1.9 3.1 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 C1_1 PF00130.22 gi|116754149|ref|YP_843267.1| - 0.19 11.6 8.3 1.1 9.2 0.1 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PolC_DP2 PF03833.13 gi|116754149|ref|YP_843267.1| - 0.27 9.0 3.6 0.29 8.9 3.6 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-CHY PF05495.12 gi|116754149|ref|YP_843267.1| - 0.28 11.7 10.1 1.1 9.8 7.5 2.1 1 1 1 2 2 2 0 CHY zinc finger Fer4 PF00037.27 gi|116754149|ref|YP_843267.1| - 0.34 10.8 0.2 0.34 10.8 0.2 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain Pput2613-deam PF14427.6 gi|116754149|ref|YP_843267.1| - 0.38 10.6 2.4 0.79 9.6 2.4 1.5 1 1 0 1 1 1 0 Pput_2613-like deaminase zf-C2HC5 PF06221.13 gi|116754149|ref|YP_843267.1| - 0.61 10.1 10.9 0.62 10.1 4.8 2.3 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Fer4_2 PF12797.7 gi|116754149|ref|YP_843267.1| - 1.1 9.5 0.1 1.1 9.5 0.1 3.6 2 1 0 2 2 1 0 4Fe-4S binding domain NMDAR2_C PF10565.9 gi|116754149|ref|YP_843267.1| - 1.6 7.5 5.5 1.8 7.3 5.5 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus zinc_ribbon_10 PF10058.9 gi|116754149|ref|YP_843267.1| - 1.8 8.3 9.2 7.8 6.3 0.0 3.4 3 1 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein Prok-RING_2 PF14445.6 gi|116754149|ref|YP_843267.1| - 2.2 8.5 9.5 9.1 6.5 9.5 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 HypA PF01155.19 gi|116754149|ref|YP_843267.1| - 2.8 8.0 9.1 13 5.8 0.2 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|116754149|ref|YP_843267.1| - 4.4 7.3 10.6 2.3 8.2 6.5 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-LITAF-like PF10601.9 gi|116754149|ref|YP_843267.1| - 4.8 7.5 11.7 11 6.4 0.1 3.2 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|116754149|ref|YP_843267.1| - 6.5 6.3 17.9 0.45 10.0 0.4 3.8 2 1 1 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|116754149|ref|YP_843267.1| - 8.8 6.0 11.8 3.3 7.4 0.2 3.3 1 1 2 3 3 3 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|116754149|ref|YP_843267.1| - 9.7 6.0 17.8 0.67 9.7 0.4 4.0 4 0 0 4 4 4 0 Rubredoxin metal binding domain AA_kinase PF00696.28 gi|116754150|ref|YP_843268.1| - 7.2e-14 52.0 0.0 7.9e-07 28.9 0.0 2.1 2 0 0 2 2 2 2 Amino acid kinase family Ribonuc_red_lgN PF00317.21 gi|116754150|ref|YP_843268.1| - 0.16 12.0 0.0 0.48 10.5 0.0 1.7 2 0 0 2 2 2 0 Ribonucleotide reductase, all-alpha domain NAD_kinase PF01513.21 gi|116754151|ref|YP_843269.1| - 1.1e-52 179.0 0.1 1.6e-52 178.6 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|116754151|ref|YP_843269.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Inositol_P PF00459.25 gi|116754152|ref|YP_843270.1| - 2.8e-29 102.5 0.0 3.4e-29 102.2 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|116754152|ref|YP_843270.1| - 0.0087 15.6 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain DMRL_synthase PF00885.19 gi|116754153|ref|YP_843271.1| - 1.8e-17 63.5 0.4 2.2e-17 63.2 0.4 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase SpoU_sub_bind PF08032.12 gi|116754153|ref|YP_843271.1| - 0.016 15.5 0.1 0.071 13.4 0.1 2.0 1 1 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding Histidinol_dh PF00815.20 gi|116754154|ref|YP_843272.1| - 2.8e-172 573.3 2.1 3.4e-172 573.1 2.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DNA_ligase_A_M PF01068.21 gi|116754155|ref|YP_843273.1| - 2.6e-56 190.5 0.0 4e-56 189.9 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|116754155|ref|YP_843273.1| - 1.6e-39 136.0 0.0 3.8e-36 125.0 0.0 2.4 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|116754155|ref|YP_843273.1| - 3.9e-17 62.7 0.0 8.3e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|116754155|ref|YP_843273.1| - 4.1e-06 27.2 0.0 7.6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 RNA ligase Homoserine_dh PF00742.19 gi|116754156|ref|YP_843274.1| - 1.7e-57 194.1 0.3 4.3e-57 192.8 0.1 1.6 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|116754156|ref|YP_843274.1| - 4.2e-12 46.7 0.2 7.2e-12 46.0 0.2 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|116754156|ref|YP_843274.1| - 0.004 16.9 0.1 0.0077 16.0 0.1 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|116754156|ref|YP_843274.1| - 0.12 12.6 0.4 0.28 11.4 0.2 1.8 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain ACT PF01842.25 gi|116754157|ref|YP_843275.1| - 0.0025 17.6 0.0 0.0078 16.0 0.0 1.8 2 0 0 2 2 2 1 ACT domain Saccharop_dh_N PF04455.12 gi|116754157|ref|YP_843275.1| - 0.0025 18.2 0.2 0.0069 16.8 0.1 1.7 1 1 1 2 2 2 1 LOR/SDH bifunctional enzyme conserved region NosD PF05048.13 gi|116754158|ref|YP_843276.1| - 1.3e-06 27.8 4.3 1.9e-06 27.3 3.8 1.4 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.11 gi|116754158|ref|YP_843276.1| - 0.00011 21.7 2.0 0.00061 19.2 2.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) Pectinesterase PF01095.19 gi|116754158|ref|YP_843276.1| - 0.033 12.9 0.2 0.036 12.8 0.2 1.2 1 1 0 1 1 1 0 Pectinesterase DUF2124 PF09897.9 gi|116754159|ref|YP_843277.1| - 3.4e-54 182.6 0.1 3.9e-54 182.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) PspA_IM30 PF04012.12 gi|116754160|ref|YP_843278.1| - 2.6e-31 108.9 26.9 2.9e-31 108.8 26.9 1.0 1 0 0 1 1 1 1 PspA/IM30 family Snf7 PF03357.21 gi|116754160|ref|YP_843278.1| - 0.0044 16.7 11.9 0.0044 16.7 11.9 2.4 1 1 1 3 3 3 1 Snf7 DUF1664 PF07889.12 gi|116754160|ref|YP_843278.1| - 0.015 15.3 11.6 0.24 11.4 4.8 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) NOG1 PF06858.14 gi|116754160|ref|YP_843278.1| - 0.041 13.7 0.6 0.15 11.8 0.0 2.2 3 0 0 3 3 3 0 Nucleolar GTP-binding protein 1 (NOG1) DUF5082 PF16888.5 gi|116754160|ref|YP_843278.1| - 0.052 13.8 14.0 0.27 11.5 6.1 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) Flagellin_C PF00700.21 gi|116754160|ref|YP_843278.1| - 0.052 13.9 12.1 0.6 10.5 0.1 3.5 4 0 0 4 4 3 0 Bacterial flagellin C-terminal helical region Prominin PF05478.11 gi|116754160|ref|YP_843278.1| - 0.088 10.8 3.6 0.11 10.5 3.6 1.2 1 0 0 1 1 1 0 Prominin DUF3584 PF12128.8 gi|116754160|ref|YP_843278.1| - 0.1 10.1 19.5 0.044 11.3 10.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Spc7 PF08317.11 gi|116754160|ref|YP_843278.1| - 0.18 10.7 21.6 0.33 9.8 17.6 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein YabA PF06156.13 gi|116754160|ref|YP_843278.1| - 0.19 12.4 13.4 0.31 11.7 3.0 2.7 1 1 2 3 3 3 0 Initiation control protein YabA FlxA PF14282.6 gi|116754160|ref|YP_843278.1| - 0.31 11.1 14.0 0.55 10.2 11.8 2.4 1 1 1 2 2 2 0 FlxA-like protein Baculo_PEP_C PF04513.12 gi|116754160|ref|YP_843278.1| - 0.37 10.8 9.5 0.67 10.0 3.8 2.6 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|116754160|ref|YP_843278.1| - 0.52 10.8 7.7 5 7.7 1.9 3.2 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein YlqD PF11068.8 gi|116754160|ref|YP_843278.1| - 1.3 9.4 15.8 0.43 10.9 6.8 2.7 1 1 1 2 2 2 0 YlqD protein ABC_tran_CTD PF16326.5 gi|116754160|ref|YP_843278.1| - 1.3 9.3 24.8 0.11 12.7 4.2 4.4 1 1 3 4 4 4 0 ABC transporter C-terminal domain DUF724 PF05266.14 gi|116754160|ref|YP_843278.1| - 2.2 8.1 15.7 0.31 10.9 5.5 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF724) UPF0449 PF15136.6 gi|116754160|ref|YP_843278.1| - 2.2 8.8 13.1 1.5 9.3 3.1 2.7 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 DUF4472 PF14739.6 gi|116754160|ref|YP_843278.1| - 2.6 8.8 17.3 0.21 12.3 6.4 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4472) APG6_N PF17675.1 gi|116754160|ref|YP_843278.1| - 2.9 8.4 27.4 4.5 7.8 20.0 3.2 1 1 1 2 2 2 0 Apg6 coiled-coil region DivIC PF04977.15 gi|116754160|ref|YP_843278.1| - 3.3 7.6 25.0 0.1 12.4 5.5 3.6 4 1 0 4 4 4 0 Septum formation initiator TMF_DNA_bd PF12329.8 gi|116754160|ref|YP_843278.1| - 3.6 7.7 18.5 0.19 11.7 8.9 3.1 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF4407 PF14362.6 gi|116754160|ref|YP_843278.1| - 7.4 5.8 21.7 21 4.3 20.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) FapA PF03961.13 gi|116754160|ref|YP_843278.1| - 7.8 5.0 13.3 2.9 6.4 7.9 1.9 1 1 1 2 2 2 0 Flagellar Assembly Protein A NigD_N PF12667.7 gi|116754162|ref|YP_843280.1| - 0.18 12.0 0.0 0.41 10.8 0.0 1.5 1 0 0 1 1 1 0 NigD-like N-terminal OB domain Peptidase_M48 PF01435.18 gi|116754163|ref|YP_843281.1| - 7.3e-41 140.1 0.0 7.3e-41 140.1 0.0 1.4 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|116754163|ref|YP_843281.1| - 1.5e-06 27.6 4.1 1.9e-05 24.0 0.5 2.6 1 1 1 2 2 2 2 BlaR1 peptidase M56 DUF2268 PF10026.9 gi|116754163|ref|YP_843281.1| - 0.049 13.2 0.0 0.072 12.7 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF4157 PF13699.6 gi|116754163|ref|YP_843281.1| - 0.25 11.6 0.8 0.88 9.9 0.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4157) DUF2207 PF09972.9 gi|116754163|ref|YP_843281.1| - 6.8 5.3 7.9 1.2 7.8 0.1 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Aconitase_C PF00694.19 gi|116754164|ref|YP_843282.1| - 1.1e-20 74.3 0.0 1.7e-20 73.7 0.0 1.4 1 1 0 1 1 1 1 Aconitase C-terminal domain T4_neck-protein PF11649.8 gi|116754165|ref|YP_843283.1| - 0.034 13.5 0.0 0.061 12.6 0.0 1.4 2 0 0 2 2 2 0 Virus neck protein Iso_dh PF00180.20 gi|116754166|ref|YP_843284.1| - 1.8e-93 313.4 0.0 4.5e-93 312.2 0.0 1.5 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase ABC_tran PF00005.27 gi|116754167|ref|YP_843285.1| - 4e-61 205.5 0.0 1.2e-30 106.8 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|116754167|ref|YP_843285.1| - 2.7e-23 82.3 0.1 1e-16 61.1 0.0 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|116754167|ref|YP_843285.1| - 1.3e-14 54.7 6.5 2.1e-05 24.5 0.1 4.1 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|116754167|ref|YP_843285.1| - 2.7e-11 43.3 0.0 2e-05 24.1 0.0 2.7 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|116754167|ref|YP_843285.1| - 3e-09 37.2 7.0 0.00082 19.7 0.5 3.9 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|116754167|ref|YP_843285.1| - 1.1e-07 32.4 3.2 0.0032 17.9 0.1 2.7 2 1 0 2 2 2 2 AAA ATPase domain NACHT PF05729.12 gi|116754167|ref|YP_843285.1| - 6.8e-06 26.1 2.3 0.032 14.2 0.1 2.8 2 1 0 2 2 2 2 NACHT domain AAA_25 PF13481.6 gi|116754167|ref|YP_843285.1| - 9e-06 25.4 4.4 0.016 14.8 0.9 3.4 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|116754167|ref|YP_843285.1| - 9.7e-06 25.2 1.0 0.072 12.8 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|116754167|ref|YP_843285.1| - 2.3e-05 24.3 0.2 0.068 13.1 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA PF00004.29 gi|116754167|ref|YP_843285.1| - 2.6e-05 24.7 0.0 0.085 13.3 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|116754167|ref|YP_843285.1| - 5.8e-05 22.2 0.1 0.08 11.8 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.6 gi|116754167|ref|YP_843285.1| - 8.6e-05 22.3 0.0 0.32 10.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|116754167|ref|YP_843285.1| - 8.8e-05 21.8 0.1 0.38 9.9 0.2 2.6 3 0 0 3 3 2 2 NB-ARC domain IstB_IS21 PF01695.17 gi|116754167|ref|YP_843285.1| - 0.00012 21.9 2.7 1.1 8.9 0.0 3.9 4 0 0 4 4 4 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|116754167|ref|YP_843285.1| - 0.00015 21.2 0.4 0.023 14.1 0.0 3.2 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|116754167|ref|YP_843285.1| - 0.00043 20.3 0.4 0.26 11.3 0.0 2.3 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|116754167|ref|YP_843285.1| - 0.00094 18.9 2.2 0.49 10.1 0.0 3.1 2 2 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|116754167|ref|YP_843285.1| - 0.0011 19.1 1.5 1.5 8.9 0.1 2.5 2 0 0 2 2 2 2 Helicase HerA, central domain ATPase PF06745.13 gi|116754167|ref|YP_843285.1| - 0.0011 18.3 0.0 1.4 8.2 0.0 2.3 2 0 0 2 2 2 2 KaiC Zeta_toxin PF06414.12 gi|116754167|ref|YP_843285.1| - 0.0014 18.0 0.2 0.78 9.0 0.0 2.5 2 1 0 2 2 2 1 Zeta toxin G-alpha PF00503.20 gi|116754167|ref|YP_843285.1| - 0.002 17.3 0.0 0.018 14.2 0.0 2.0 2 0 0 2 2 2 1 G-protein alpha subunit Roc PF08477.13 gi|116754167|ref|YP_843285.1| - 0.0021 18.3 0.2 2.1 8.6 0.1 2.4 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase MobB PF03205.14 gi|116754167|ref|YP_843285.1| - 0.003 17.4 0.7 1.3 8.9 0.1 2.8 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.6 gi|116754167|ref|YP_843285.1| - 0.0035 17.5 2.2 4.7 7.5 0.3 4.5 3 2 0 3 3 2 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|116754167|ref|YP_843285.1| - 0.0037 17.3 0.1 0.55 10.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|116754167|ref|YP_843285.1| - 0.0039 17.7 0.0 4.5 7.8 0.0 2.6 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.12 gi|116754167|ref|YP_843285.1| - 0.0046 16.5 0.6 2.4 7.6 0.1 2.4 2 0 0 2 2 2 1 Poxvirus A32 protein AAA_23 PF13476.6 gi|116754167|ref|YP_843285.1| - 0.0065 17.0 1.1 1.2 9.6 0.2 2.3 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|116754167|ref|YP_843285.1| - 0.0084 15.6 0.2 1.9 8.0 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region PduV-EutP PF10662.9 gi|116754167|ref|YP_843285.1| - 0.0085 15.8 0.4 2 8.1 0.1 2.7 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Myosin_head PF00063.21 gi|116754167|ref|YP_843285.1| - 0.0085 14.4 0.2 1.5 7.0 0.0 2.1 2 0 0 2 2 2 1 Myosin head (motor domain) HTH_20 PF12840.7 gi|116754167|ref|YP_843285.1| - 0.0088 16.1 2.4 5.8 7.1 0.1 4.5 4 1 0 4 4 4 0 Helix-turn-helix domain TniB PF05621.11 gi|116754167|ref|YP_843285.1| - 0.011 15.2 0.1 35 3.7 0.0 3.6 4 0 0 4 4 3 0 Bacterial TniB protein RNA_helicase PF00910.22 gi|116754167|ref|YP_843285.1| - 0.011 16.2 0.0 1.9 8.9 0.0 2.5 2 0 0 2 2 2 0 RNA helicase PRK PF00485.18 gi|116754167|ref|YP_843285.1| - 0.012 15.3 0.0 4.6 6.9 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family ATP-synt_ab PF00006.25 gi|116754167|ref|YP_843285.1| - 0.015 15.0 0.0 3.4 7.3 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain CbiA PF01656.23 gi|116754167|ref|YP_843285.1| - 0.015 15.4 0.8 1.4 9.0 0.1 2.6 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Sigma54_activat PF00158.26 gi|116754167|ref|YP_843285.1| - 0.015 15.0 1.3 2 8.1 0.0 3.1 3 0 0 3 3 3 0 Sigma-54 interaction domain APS_kinase PF01583.20 gi|116754167|ref|YP_843285.1| - 0.018 14.9 0.2 6.6 6.6 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase PhoH PF02562.16 gi|116754167|ref|YP_843285.1| - 0.027 13.9 0.1 5.3 6.4 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein Septin PF00735.18 gi|116754167|ref|YP_843285.1| - 0.031 13.5 0.1 5.5 6.2 0.0 2.2 2 0 0 2 2 2 0 Septin AAA_33 PF13671.6 gi|116754167|ref|YP_843285.1| - 0.042 14.0 7.0 2 8.6 0.2 3.5 2 2 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|116754167|ref|YP_843285.1| - 0.053 13.4 0.1 8.9 6.2 0.1 2.5 2 0 0 2 2 2 0 NTPase DLIC PF05783.11 gi|116754167|ref|YP_843285.1| - 0.058 12.2 0.2 2.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) MMR_HSR1 PF01926.23 gi|116754167|ref|YP_843285.1| - 0.061 13.4 0.1 15 5.7 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase DEAD PF00270.29 gi|116754167|ref|YP_843285.1| - 0.069 12.9 0.6 4.3 7.1 0.1 2.8 2 2 0 2 2 2 0 DEAD/DEAH box helicase TrkA_C PF02080.21 gi|116754167|ref|YP_843285.1| - 0.084 12.7 0.0 1.1 9.1 0.0 2.6 2 0 0 2 2 2 0 TrkA-C domain DUF188 PF02639.14 gi|116754167|ref|YP_843285.1| - 0.093 12.4 0.4 6 6.5 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized BCR, YaiI/YqxD family COG1671 AAA_19 PF13245.6 gi|116754167|ref|YP_843285.1| - 0.12 12.7 0.2 22 5.4 0.0 3.1 3 0 0 3 3 3 0 AAA domain cobW PF02492.19 gi|116754167|ref|YP_843285.1| - 0.19 11.3 0.9 15 5.1 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.6 gi|116754167|ref|YP_843285.1| - 0.3 10.8 0.0 1.5 8.5 0.0 2.1 3 0 0 3 3 2 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|116754168|ref|YP_843286.1| - 1.7e-19 70.3 11.7 1.7e-19 70.3 11.7 2.0 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|116754168|ref|YP_843286.1| - 0.0013 18.6 0.2 0.0013 18.6 0.2 3.5 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|116754169|ref|YP_843287.1| - 2.4e-34 118.7 11.9 2.4e-34 118.7 11.9 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_1_5 PF13737.6 gi|116754170|ref|YP_843288.1| - 8.2e-33 113.1 0.0 3.2e-31 107.9 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|116754170|ref|YP_843288.1| - 9e-21 74.5 0.1 1.6e-20 73.7 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain Ion_trans PF00520.31 gi|116754171|ref|YP_843289.1| - 4.4e-28 98.2 6.3 5.3e-28 97.9 6.3 1.0 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|116754171|ref|YP_843289.1| - 7.2e-14 51.5 0.9 7.2e-14 51.5 0.9 1.8 2 0 0 2 2 2 1 Ion channel V4R PF02830.18 gi|116754171|ref|YP_843289.1| - 0.059 13.4 0.0 0.096 12.7 0.0 1.3 1 0 0 1 1 1 0 V4R domain zf-ribbon_3 PF13248.6 gi|116754171|ref|YP_843289.1| - 0.061 12.8 0.1 0.098 12.1 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|116754171|ref|YP_843289.1| - 0.067 13.3 0.5 0.11 12.6 0.5 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|116754171|ref|YP_843289.1| - 0.077 12.7 0.1 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain CTP_synth_N PF06418.14 gi|116754172|ref|YP_843290.1| - 5.3e-124 412.8 0.3 6.9e-124 412.4 0.3 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|116754172|ref|YP_843290.1| - 3.3e-57 193.3 0.0 5.5e-57 192.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|116754172|ref|YP_843290.1| - 5.8e-07 29.5 0.0 1.4e-05 25.0 0.0 2.7 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|116754172|ref|YP_843290.1| - 0.00017 21.7 0.0 0.00025 21.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DJ-1_PfpI PF01965.24 gi|116754172|ref|YP_843290.1| - 0.038 13.8 0.0 0.31 10.8 0.0 2.2 2 0 0 2 2 2 0 DJ-1/PfpI family ArsA_ATPase PF02374.15 gi|116754172|ref|YP_843290.1| - 0.097 11.8 0.0 0.95 8.6 0.0 2.2 2 0 0 2 2 2 0 Anion-transporting ATPase GATase_3 PF07685.14 gi|116754172|ref|YP_843290.1| - 0.12 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Tubulin_C PF03953.17 gi|116754172|ref|YP_843290.1| - 0.16 12.1 0.0 0.45 10.7 0.0 1.7 1 0 0 1 1 1 0 Tubulin C-terminal domain Trm112p PF03966.16 gi|116754174|ref|YP_843292.1| - 7.6e-13 48.8 0.3 1.3e-12 48.1 0.3 1.4 1 0 0 1 1 1 1 Trm112p-like protein DUF35_N PF12172.8 gi|116754174|ref|YP_843292.1| - 0.0041 17.0 0.1 1.8 8.5 0.0 2.3 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) ADK_lid PF05191.14 gi|116754174|ref|YP_843292.1| - 0.0047 16.9 0.8 0.033 14.2 0.0 2.1 2 0 0 2 2 2 1 Adenylate kinase, active site lid zf-RRN7 PF11781.8 gi|116754174|ref|YP_843292.1| - 0.0052 16.5 1.0 1.5 8.6 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Elf1 PF05129.13 gi|116754174|ref|YP_843292.1| - 0.0075 16.3 0.0 0.0081 16.2 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Nudix_N_2 PF14803.6 gi|116754174|ref|YP_843292.1| - 0.0088 15.9 1.5 0.021 14.7 1.5 1.7 1 1 0 1 1 1 1 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|116754174|ref|YP_843292.1| - 0.019 14.5 4.4 0.046 13.3 4.4 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|116754174|ref|YP_843292.1| - 0.019 15.3 0.2 0.022 15.2 0.2 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar RNA_POL_M_15KD PF02150.16 gi|116754174|ref|YP_843292.1| - 0.02 14.8 1.3 0.055 13.3 1.3 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|116754174|ref|YP_843292.1| - 0.053 13.5 0.8 0.12 12.4 0.9 1.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1644 PF07800.12 gi|116754174|ref|YP_843292.1| - 0.071 13.2 0.2 0.082 13.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1644) Rubredoxin PF00301.20 gi|116754174|ref|YP_843292.1| - 0.072 13.1 0.1 5.4 7.1 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin PTH2 PF01981.16 gi|116754175|ref|YP_843293.1| - 3.3e-38 130.6 0.0 3.7e-38 130.4 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 NPCBM_assoc PF10633.9 gi|116754176|ref|YP_843294.1| - 0.00039 20.6 0.0 1.2 9.4 0.0 2.6 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase MMPL PF03176.15 gi|116754177|ref|YP_843295.1| - 6.1e-54 183.2 19.5 5.6e-29 101.1 2.9 2.1 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|116754177|ref|YP_843295.1| - 8.2e-12 45.2 17.3 2.5e-06 27.4 4.1 2.7 2 1 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|116754177|ref|YP_843295.1| - 9.5e-08 31.6 9.0 9.5e-08 31.6 9.0 2.5 2 0 0 2 2 2 1 Protein export membrane protein Patched PF02460.18 gi|116754177|ref|YP_843295.1| - 1.6e-07 29.8 22.2 0.0001 20.6 13.5 2.7 3 0 0 3 3 3 2 Patched family ACR_tran PF00873.19 gi|116754177|ref|YP_843295.1| - 2.3e-07 29.0 25.7 0.00018 19.4 5.7 2.9 3 0 0 3 3 3 2 AcrB/AcrD/AcrF family RTX_C PF08339.10 gi|116754177|ref|YP_843295.1| - 0.2 11.7 0.0 0.38 10.8 0.0 1.3 1 0 0 1 1 1 0 RTX C-terminal domain DUF211 PF02680.14 gi|116754177|ref|YP_843295.1| - 0.6 10.3 2.5 2.1 8.6 0.5 2.6 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 HTH_5 PF01022.20 gi|116754178|ref|YP_843296.1| - 4.6e-05 23.2 0.0 0.00013 21.7 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|116754178|ref|YP_843296.1| - 0.0021 18.4 0.0 0.0071 16.7 0.0 1.9 2 0 0 2 2 2 1 Penicillinase repressor TrmB PF01978.19 gi|116754178|ref|YP_843296.1| - 0.0064 16.3 0.1 0.02 14.8 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|116754178|ref|YP_843296.1| - 0.0094 16.0 0.0 0.028 14.5 0.0 1.7 1 0 0 1 1 1 1 DprA winged helix domain PhoU PF01895.19 gi|116754178|ref|YP_843296.1| - 0.033 14.6 2.1 0.33 11.5 0.7 2.3 2 0 0 2 2 2 0 PhoU domain HTH_11 PF08279.12 gi|116754178|ref|YP_843296.1| - 0.035 14.1 0.1 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_IclR PF09339.10 gi|116754178|ref|YP_843296.1| - 0.048 13.5 0.2 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain PET10 PF17316.2 gi|116754178|ref|YP_843296.1| - 0.08 12.5 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Petite colonies protein 10 DUF2115 PF09888.9 gi|116754178|ref|YP_843296.1| - 0.12 12.9 0.2 0.26 11.8 0.1 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2115) PLU-1 PF08429.11 gi|116754178|ref|YP_843296.1| - 0.17 11.0 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 PLU-1-like protein DUF502 PF04367.13 gi|116754180|ref|YP_843298.1| - 0.11 12.4 1.1 4.5 7.2 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF502) DUF4131 PF13567.6 gi|116754180|ref|YP_843298.1| - 5.4 6.6 7.4 3.3e+02 0.8 7.4 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Aminotran_5 PF00266.19 gi|116754182|ref|YP_843300.1| - 1.9e-90 303.5 0.0 2.2e-90 303.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|116754182|ref|YP_843300.1| - 5.8e-08 32.4 0.0 7.6e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|116754182|ref|YP_843300.1| - 7.6e-08 32.0 0.0 1.7e-07 30.9 0.1 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|116754182|ref|YP_843300.1| - 6.1e-06 25.0 0.0 8.6e-06 24.5 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.19 gi|116754182|ref|YP_843300.1| - 0.086 11.5 0.0 0.12 11.0 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Thg1 PF04446.12 gi|116754185|ref|YP_843303.1| - 4.3e-20 72.0 0.0 7.3e-20 71.3 0.0 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|116754185|ref|YP_843303.1| - 2.5e-06 27.6 0.0 3.7e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain MRF_C1 PF13887.6 gi|116754185|ref|YP_843303.1| - 0.1 11.8 0.0 0.52 9.5 0.0 2.0 2 0 0 2 2 2 0 Myelin gene regulatory factor -C-terminal domain 1 PRC PF05239.16 gi|116754186|ref|YP_843304.1| - 2.1e-14 53.3 0.8 2.3e-14 53.2 0.8 1.0 1 0 0 1 1 1 1 PRC-barrel domain PQQ_3 PF13570.6 gi|116754187|ref|YP_843305.1| - 8e-65 213.9 39.4 9e-06 26.0 0.9 16.2 16 0 0 16 16 16 13 PQQ-like domain PQQ_2 PF13360.6 gi|116754187|ref|YP_843305.1| - 4e-61 206.6 0.7 1.6e-17 63.9 0.0 7.3 3 2 3 6 6 6 6 PQQ-like domain PQQ PF01011.21 gi|116754187|ref|YP_843305.1| - 2.4e-39 131.4 22.4 7.3e-05 22.5 0.0 14.0 15 0 0 15 15 15 9 PQQ enzyme repeat DUF4905 PF16248.5 gi|116754187|ref|YP_843305.1| - 0.0015 18.3 0.1 10 6.1 0.0 4.8 6 0 0 6 6 6 2 Domain of unknown function (DUF4905) CobN-Mg_chel PF02514.16 gi|116754188|ref|YP_843306.1| - 0 1120.7 0.0 0 1120.5 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase PQQ_2 PF13360.6 gi|116754188|ref|YP_843306.1| - 4.6e-65 219.5 12.3 4.2e-25 88.7 0.4 3.7 1 1 2 4 4 4 3 PQQ-like domain PQQ_3 PF13570.6 gi|116754188|ref|YP_843306.1| - 2.8e-53 177.1 25.5 2.1e-07 31.2 0.0 9.0 9 0 0 9 9 9 8 PQQ-like domain PQQ PF01011.21 gi|116754188|ref|YP_843306.1| - 5.4e-27 92.4 10.9 8.7e-07 28.6 0.0 8.5 8 0 0 8 8 8 5 PQQ enzyme repeat DUF4905 PF16248.5 gi|116754188|ref|YP_843306.1| - 0.0043 16.9 0.0 3.5 7.6 0.0 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF4905) DUF4430 PF14478.6 gi|116754188|ref|YP_843306.1| - 0.023 15.3 0.5 0.45 11.1 0.0 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4430) AsnC_trans_reg PF01037.21 gi|116754189|ref|YP_843307.1| - 5.5e-15 55.1 0.4 8.7e-15 54.5 0.1 1.5 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|116754189|ref|YP_843307.1| - 5.8e-08 32.2 0.5 1.1e-07 31.3 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|116754189|ref|YP_843307.1| - 1.4e-07 31.4 0.1 7.3e-07 29.1 0.1 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|116754189|ref|YP_843307.1| - 1.5e-06 27.9 1.2 4e-06 26.5 0.7 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|116754189|ref|YP_843307.1| - 3e-05 24.0 0.1 5.8e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|116754189|ref|YP_843307.1| - 0.0014 18.6 0.3 0.0029 17.5 0.3 1.6 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|116754189|ref|YP_843307.1| - 0.0015 18.4 0.1 0.0027 17.6 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|116754189|ref|YP_843307.1| - 0.013 15.4 0.1 0.032 14.1 0.1 1.6 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.6 gi|116754189|ref|YP_843307.1| - 0.027 14.2 0.3 0.08 12.7 0.3 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|116754189|ref|YP_843307.1| - 0.04 13.6 0.1 0.063 13.0 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_23 PF13384.6 gi|116754189|ref|YP_843307.1| - 0.06 13.2 0.1 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_34 PF13601.6 gi|116754189|ref|YP_843307.1| - 0.065 13.4 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|116754189|ref|YP_843307.1| - 0.073 13.0 0.2 0.18 11.7 0.2 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r3 PF04539.16 gi|116754189|ref|YP_843307.1| - 0.074 13.2 0.3 0.16 12.1 0.3 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 Stk19 PF10494.9 gi|116754189|ref|YP_843307.1| - 0.088 12.5 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 YflT PF11181.8 gi|116754189|ref|YP_843307.1| - 0.093 13.2 0.3 0.14 12.6 0.3 1.4 1 1 0 1 1 1 0 Heat induced stress protein YflT HTH_DeoR PF08220.12 gi|116754189|ref|YP_843307.1| - 0.11 12.2 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Crp PF00325.20 gi|116754189|ref|YP_843307.1| - 0.14 11.9 0.1 0.28 10.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family ATP-synt_ab PF00006.25 gi|116754189|ref|YP_843307.1| - 0.15 11.7 0.2 0.97 9.0 0.1 1.9 1 1 1 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain HTH_36 PF13730.6 gi|116754189|ref|YP_843307.1| - 0.15 12.0 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Aminotran_1_2 PF00155.21 gi|116754190|ref|YP_843308.1| - 4.5e-70 236.7 0.0 5.1e-70 236.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|116754190|ref|YP_843308.1| - 1.8e-09 37.4 0.0 3.2e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|116754190|ref|YP_843308.1| - 1.8e-05 23.9 0.0 3.3e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|116754190|ref|YP_843308.1| - 0.00047 18.8 0.0 0.00098 17.8 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|116754190|ref|YP_843308.1| - 0.013 14.8 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Forkhead_N PF08430.12 gi|116754190|ref|YP_843308.1| - 0.02 15.5 0.3 0.034 14.8 0.3 1.3 1 0 0 1 1 1 0 Forkhead N-terminal region CDP-OH_P_transf PF01066.21 gi|116754191|ref|YP_843309.1| - 2.1e-06 28.4 1.6 2.1e-06 28.4 1.6 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase LIM PF00412.22 gi|116754192|ref|YP_843310.1| - 4.9e-06 26.7 2.2 7.5e-06 26.1 1.4 1.7 2 0 0 2 2 2 1 LIM domain TFIIE_alpha PF02002.17 gi|116754192|ref|YP_843310.1| - 0.006 16.4 0.0 0.0083 16.0 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.7 gi|116754192|ref|YP_843310.1| - 0.0099 15.9 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4428 PF14471.6 gi|116754192|ref|YP_843310.1| - 0.049 13.6 0.2 0.084 12.8 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) DZR PF12773.7 gi|116754192|ref|YP_843310.1| - 0.079 13.0 0.6 0.16 12.0 0.6 1.5 1 0 0 1 1 1 0 Double zinc ribbon HTH_Crp_2 PF13545.6 gi|116754192|ref|YP_843310.1| - 0.099 12.6 0.0 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain zinc_ribbon_2 PF13240.6 gi|116754192|ref|YP_843310.1| - 0.11 12.3 0.3 1.2 8.9 0.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-FLZ PF04570.14 gi|116754192|ref|YP_843310.1| - 0.11 12.0 2.7 0.31 10.6 2.4 2.0 2 0 0 2 2 2 0 zinc-finger of the FCS-type, C2-C2 CxxCxxCC PF03692.15 gi|116754193|ref|YP_843311.1| - 5e-14 52.7 1.6 6.7e-14 52.3 1.6 1.1 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF2385 PF09539.10 gi|116754193|ref|YP_843311.1| - 0.046 14.3 0.0 0.074 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2385) DUF3109 PF11307.8 gi|116754193|ref|YP_843311.1| - 0.093 12.5 2.9 4.5 7.0 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3109) Hydrolase_3 PF08282.12 gi|116754194|ref|YP_843312.1| - 7e-30 104.6 0.0 3e-19 69.8 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|116754194|ref|YP_843312.1| - 2.5e-10 41.0 0.1 1.2e-08 35.6 0.1 2.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|116754194|ref|YP_843312.1| - 5.4e-07 30.2 4.4 0.0033 17.8 0.0 3.4 3 1 1 4 4 4 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|116754194|ref|YP_843312.1| - 0.00058 19.5 0.0 0.0038 16.8 0.0 2.2 3 0 0 3 3 3 1 Sucrose-6F-phosphate phosphohydrolase Rad51 PF08423.11 gi|116754195|ref|YP_843313.1| - 2.7e-83 279.1 0.0 3.3e-83 278.9 0.0 1.0 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|116754195|ref|YP_843313.1| - 3.2e-13 50.1 1.0 6e-13 49.2 1.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|116754195|ref|YP_843313.1| - 4.7e-13 49.2 0.0 2.3e-05 24.0 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|116754195|ref|YP_843313.1| - 1e-07 31.7 0.0 1.9e-07 30.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|116754195|ref|YP_843313.1| - 5.4e-07 29.2 0.0 8e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH PF00633.23 gi|116754195|ref|YP_843313.1| - 2.2e-06 27.2 4.1 0.0022 17.8 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|116754195|ref|YP_843313.1| - 2.1e-05 24.5 0.5 4.9e-05 23.4 0.5 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|116754195|ref|YP_843313.1| - 5.8e-05 22.8 0.1 0.0013 18.5 0.0 3.0 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|116754195|ref|YP_843313.1| - 6.4e-05 23.1 0.0 0.00012 22.3 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus AAA_24 PF13479.6 gi|116754195|ref|YP_843313.1| - 0.0026 17.5 0.0 0.0058 16.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|116754195|ref|YP_843313.1| - 0.0031 17.9 0.0 0.0079 16.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CobU PF02283.16 gi|116754195|ref|YP_843313.1| - 0.0035 16.9 0.0 0.043 13.4 0.1 2.2 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase IMS_HHH PF11798.8 gi|116754195|ref|YP_843313.1| - 0.018 15.3 0.0 0.057 13.8 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif AAA_18 PF13238.6 gi|116754195|ref|YP_843313.1| - 0.04 14.5 0.0 0.16 12.5 0.0 2.2 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|116754195|ref|YP_843313.1| - 0.046 13.4 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain HHH_3 PF12836.7 gi|116754195|ref|YP_843313.1| - 0.048 13.9 0.1 16 5.9 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|116754195|ref|YP_843313.1| - 0.052 13.9 0.2 0.96 9.9 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix domain TsaE PF02367.17 gi|116754195|ref|YP_843313.1| - 0.11 12.5 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|116754195|ref|YP_843313.1| - 0.14 12.4 0.1 0.34 11.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain BAF PF02961.14 gi|116754195|ref|YP_843313.1| - 0.16 12.4 0.0 0.38 11.2 0.0 1.6 1 0 0 1 1 1 0 Barrier to autointegration factor tRNA_anti-codon PF01336.25 gi|116754196|ref|YP_843314.1| - 7.4e-26 89.9 7.6 3.9e-09 36.4 1.1 3.3 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|116754196|ref|YP_843314.1| - 3.2e-13 49.9 0.1 0.00026 20.8 0.0 3.1 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|116754196|ref|YP_843314.1| - 2.9e-09 36.7 0.0 0.008 16.1 0.0 3.2 3 0 0 3 3 3 3 Replication protein A OB domain Rep_fac-A_C PF08646.10 gi|116754196|ref|YP_843314.1| - 0.093 12.5 0.1 24 4.7 0.0 3.1 3 0 0 3 3 3 0 Replication factor-A C terminal domain ABC_tran PF00005.27 gi|116754197|ref|YP_843315.1| - 1e-56 191.2 0.0 4e-27 95.4 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|116754197|ref|YP_843315.1| - 9.9e-14 51.8 0.0 0.0016 18.4 0.0 4.0 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|116754197|ref|YP_843315.1| - 7e-08 32.6 0.1 0.0056 16.6 0.0 2.7 3 0 0 3 3 2 2 RsgA GTPase AAA_29 PF13555.6 gi|116754197|ref|YP_843315.1| - 2.1e-07 30.5 1.2 0.0025 17.5 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.19 gi|116754197|ref|YP_843315.1| - 7.7e-07 28.8 1.9 0.01 15.3 0.0 4.0 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|116754197|ref|YP_843315.1| - 7.5e-05 23.2 0.1 0.095 13.1 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|116754197|ref|YP_843315.1| - 0.00011 22.5 5.4 0.35 11.1 0.1 3.9 2 2 1 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|116754197|ref|YP_843315.1| - 0.00012 21.8 0.3 1 9.1 0.1 3.2 2 1 0 2 2 2 2 AAA domain ATP-synt_ab PF00006.25 gi|116754197|ref|YP_843315.1| - 0.00046 19.9 0.0 0.11 12.2 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.6 gi|116754197|ref|YP_843315.1| - 0.00049 20.7 4.2 0.17 12.3 0.6 2.3 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.6 gi|116754197|ref|YP_843315.1| - 0.00061 20.0 0.9 0.11 12.7 0.1 3.8 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|116754197|ref|YP_843315.1| - 0.0007 19.9 0.9 1.8 8.8 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.6 gi|116754197|ref|YP_843315.1| - 0.001 18.7 4.6 0.51 9.9 0.3 4.3 4 1 0 4 4 4 1 AAA domain MMR_HSR1 PF01926.23 gi|116754197|ref|YP_843315.1| - 0.0015 18.6 0.0 1.1 9.3 0.0 2.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase DUF87 PF01935.17 gi|116754197|ref|YP_843315.1| - 0.0023 18.1 1.6 0.77 9.8 0.1 2.5 2 0 0 2 2 2 1 Helicase HerA, central domain IstB_IS21 PF01695.17 gi|116754197|ref|YP_843315.1| - 0.0023 17.7 0.5 6.7 6.4 0.0 3.7 4 0 0 4 4 4 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|116754197|ref|YP_843315.1| - 0.0042 16.8 0.2 0.95 9.1 0.1 2.5 2 0 0 2 2 2 1 AAA domain PRK PF00485.18 gi|116754197|ref|YP_843315.1| - 0.0086 15.8 0.1 3.3 7.4 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family DLIC PF05783.11 gi|116754197|ref|YP_843315.1| - 0.018 13.9 0.1 3.5 6.4 0.0 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) MobB PF03205.14 gi|116754197|ref|YP_843315.1| - 0.018 14.9 0.8 4 7.4 0.1 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.6 gi|116754197|ref|YP_843315.1| - 0.02 14.6 0.3 1.1 8.9 0.0 2.6 3 0 0 3 3 3 0 AAA ATPase domain NB-ARC PF00931.22 gi|116754197|ref|YP_843315.1| - 0.023 13.9 0.9 2.1 7.4 0.1 2.4 2 0 0 2 2 2 0 NB-ARC domain Zeta_toxin PF06414.12 gi|116754197|ref|YP_843315.1| - 0.023 14.0 0.0 4.6 6.5 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin cobW PF02492.19 gi|116754197|ref|YP_843315.1| - 0.027 14.1 0.4 0.95 9.0 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 gi|116754197|ref|YP_843315.1| - 0.031 14.0 0.1 1.9 8.2 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 gi|116754197|ref|YP_843315.1| - 0.036 14.6 3.2 3.4 8.2 0.0 4.1 4 1 1 5 5 3 0 AAA domain TrwB_AAD_bind PF10412.9 gi|116754197|ref|YP_843315.1| - 0.072 12.0 0.7 2.8 6.8 0.0 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain TniB PF05621.11 gi|116754197|ref|YP_843315.1| - 0.089 12.2 3.2 8.8 5.7 0.0 3.8 4 0 0 4 4 4 0 Bacterial TniB protein DUF4061 PF13270.6 gi|116754197|ref|YP_843315.1| - 0.11 12.8 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4061) RNA_helicase PF00910.22 gi|116754197|ref|YP_843315.1| - 0.12 12.8 0.1 19 5.7 0.1 2.4 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.12 gi|116754197|ref|YP_843315.1| - 0.12 12.3 5.5 2.1 8.2 0.4 3.2 3 0 0 3 3 3 0 NACHT domain ABC_ATPase PF09818.9 gi|116754197|ref|YP_843315.1| - 0.13 11.0 1.8 2.3 6.9 0.1 2.9 4 0 0 4 4 4 0 Predicted ATPase of the ABC class Roc PF08477.13 gi|116754197|ref|YP_843315.1| - 0.15 12.3 0.1 16 5.8 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 gi|116754197|ref|YP_843315.1| - 0.18 12.0 1.6 8.6 6.5 0.1 2.8 3 0 0 3 3 2 0 AAA domain AAA_7 PF12775.7 gi|116754197|ref|YP_843315.1| - 0.25 10.9 0.1 3.2 7.2 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|116754197|ref|YP_843315.1| - 0.28 10.2 2.7 29 3.6 0.0 3.1 2 1 1 3 3 3 0 Type II/IV secretion system protein ATPase PF06745.13 gi|116754197|ref|YP_843315.1| - 10 5.4 8.2 6.9 5.9 0.1 3.8 5 1 1 6 6 6 0 KaiC tRNA-synt_1g PF09334.11 gi|116754198|ref|YP_843316.1| - 5e-152 506.2 0.0 6.1e-152 505.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|116754198|ref|YP_843316.1| - 1.8e-27 95.3 0.3 3.3e-27 94.4 0.3 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|116754198|ref|YP_843316.1| - 1.9e-16 59.4 0.1 7.5e-08 31.1 0.0 3.7 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|116754198|ref|YP_843316.1| - 2.2e-13 50.3 0.0 5.1e-08 32.6 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|116754198|ref|YP_843316.1| - 1.9e-09 37.7 0.0 3.2e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|116754198|ref|YP_843316.1| - 0.00012 21.2 0.0 0.027 13.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|116754198|ref|YP_843316.1| - 0.031 13.2 0.0 0.11 11.4 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (R) DZR PF12773.7 gi|116754198|ref|YP_843316.1| - 0.07 13.2 5.8 0.26 11.4 5.9 1.9 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|116754198|ref|YP_843316.1| - 4.5 7.1 8.6 2 8.2 2.2 2.7 2 0 0 2 2 2 0 zinc-ribbon domain TrmB PF01978.19 gi|116754199|ref|YP_843317.1| - 7e-06 25.8 0.0 1.2e-05 25.0 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|116754199|ref|YP_843317.1| - 0.0021 17.9 0.1 0.0053 16.6 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.6 gi|116754199|ref|YP_843317.1| - 0.0041 17.3 0.0 0.0073 16.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain SMC_ScpB PF04079.16 gi|116754199|ref|YP_843317.1| - 0.0051 16.4 0.1 0.01 15.4 0.0 1.6 1 1 0 1 1 1 1 Segregation and condensation complex subunit ScpB TFIIE_alpha PF02002.17 gi|116754199|ref|YP_843317.1| - 0.0096 15.8 1.0 0.013 15.4 1.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit DUF5100 PF17029.5 gi|116754199|ref|YP_843317.1| - 0.024 14.5 0.8 0.049 13.5 0.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF5100) HTH_27 PF13463.6 gi|116754199|ref|YP_843317.1| - 0.078 13.5 0.1 0.17 12.4 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Tubulin PF00091.25 gi|116754200|ref|YP_843318.1| - 6.9e-42 143.9 0.1 9.9e-42 143.4 0.1 1.2 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|116754200|ref|YP_843318.1| - 7.8e-35 119.1 0.7 2e-34 117.7 0.7 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|116754200|ref|YP_843318.1| - 0.0036 17.2 0.7 0.01 15.8 0.4 2.0 2 1 0 2 2 2 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|116754200|ref|YP_843318.1| - 0.64 9.1 7.3 0.3 10.2 1.7 2.2 1 1 1 2 2 2 0 Tubulin like HTH_24 PF13412.6 gi|116754201|ref|YP_843319.1| - 1e-05 25.0 0.0 4.1e-05 23.0 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|116754201|ref|YP_843319.1| - 0.0023 18.2 0.0 0.0034 17.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|116754201|ref|YP_843319.1| - 0.0026 17.6 0.0 0.0039 17.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|116754201|ref|YP_843319.1| - 0.0028 17.5 0.2 0.0046 16.8 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|116754201|ref|YP_843319.1| - 0.014 15.3 0.0 0.028 14.3 0.0 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|116754201|ref|YP_843319.1| - 0.032 14.3 0.0 0.051 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|116754201|ref|YP_843319.1| - 0.033 14.3 0.0 0.058 13.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MerR PF00376.23 gi|116754201|ref|YP_843319.1| - 0.11 12.3 0.0 16 5.3 0.0 2.2 2 0 0 2 2 2 0 MerR family regulatory protein MarR_2 PF12802.7 gi|116754201|ref|YP_843319.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 MarR family ThiI PF02568.14 gi|116754202|ref|YP_843320.1| - 1.9e-54 184.3 0.0 2.4e-54 183.9 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|116754202|ref|YP_843320.1| - 2.6e-17 63.2 0.0 4.4e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|116754202|ref|YP_843320.1| - 8.5e-05 22.2 0.0 0.0073 15.8 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|116754202|ref|YP_843320.1| - 0.011 14.6 0.0 0.018 13.9 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase DUF1232 PF06803.12 gi|116754203|ref|YP_843321.1| - 3.5e-10 39.5 0.2 6e-10 38.8 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) Radical_SAM PF04055.21 gi|116754204|ref|YP_843322.1| - 2.3e-17 63.9 0.1 4e-17 63.1 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|116754204|ref|YP_843322.1| - 3.8e-05 24.1 0.9 8.6e-05 23.0 0.2 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain rpo132 PF12415.8 gi|116754204|ref|YP_843322.1| - 0.073 12.4 1.0 0.21 10.9 0.1 2.1 2 0 0 2 2 2 0 Poxvirus DNA dependent RNA polymerase DUF3463 PF11946.8 gi|116754204|ref|YP_843322.1| - 0.14 12.0 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) SecD_SecF PF02355.16 gi|116754205|ref|YP_843323.1| - 4.9e-15 55.4 7.7 9.2e-15 54.5 7.7 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|116754205|ref|YP_843323.1| - 0.024 14.1 0.1 0.059 12.9 0.1 1.7 1 0 0 1 1 1 0 SecD/SecF GG Motif Sterol-sensing PF12349.8 gi|116754205|ref|YP_843323.1| - 0.041 13.7 2.5 0.084 12.7 2.5 1.5 1 0 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|116754205|ref|YP_843323.1| - 0.099 10.7 1.4 0.17 9.9 1.4 1.3 1 0 0 1 1 1 0 Patched family ACR_tran PF00873.19 gi|116754205|ref|YP_843323.1| - 1 6.9 5.8 1.5 6.4 5.8 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 gi|116754206|ref|YP_843324.1| - 3.2e-30 104.9 13.0 3.2e-30 104.9 13.0 1.4 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|116754206|ref|YP_843324.1| - 4.1e-06 26.1 0.0 8.2e-06 25.1 0.0 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|116754206|ref|YP_843324.1| - 0.0028 15.8 14.5 0.0035 15.5 14.5 1.1 1 0 0 1 1 1 1 Patched family DUF1232 PF06803.12 gi|116754206|ref|YP_843324.1| - 1.2 9.0 8.5 0.097 12.5 2.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1232) MMPL PF03176.15 gi|116754206|ref|YP_843324.1| - 5 5.9 20.6 0.27 10.1 15.5 1.4 2 0 0 2 2 2 0 MMPL family Nitroreductase PF00881.24 gi|116754207|ref|YP_843325.1| - 2.1e-34 119.0 1.6 2.1e-17 63.7 0.1 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|116754207|ref|YP_843325.1| - 9e-10 38.5 0.0 0.0076 15.8 0.0 3.2 2 1 1 3 3 3 3 Putative TM nitroreductase 3-alpha PF03475.14 gi|116754207|ref|YP_843325.1| - 0.077 12.9 1.2 1.6 8.6 0.1 2.9 3 0 0 3 3 3 0 3-alpha domain Radical_SAM_C PF16199.5 gi|116754208|ref|YP_843326.1| - 1e-26 92.7 0.2 2e-26 91.8 0.2 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|116754208|ref|YP_843326.1| - 2.6e-20 73.5 0.1 2.9e-19 70.1 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|116754208|ref|YP_843326.1| - 1.6e-07 31.6 0.2 3.3e-07 30.6 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|116754208|ref|YP_843326.1| - 9.7e-07 28.8 0.0 2.4e-06 27.5 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|116754208|ref|YP_843326.1| - 0.071 13.6 0.1 0.13 12.7 0.1 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PCP_red PF08369.10 gi|116754208|ref|YP_843326.1| - 0.18 12.1 0.1 0.18 12.1 0.1 2.7 2 1 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Fer4 PF00037.27 gi|116754209|ref|YP_843327.1| - 3.2e-17 61.5 35.1 3.8e-06 26.5 3.1 4.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|116754209|ref|YP_843327.1| - 8.5e-17 60.4 35.5 1.2e-07 31.5 3.0 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116754209|ref|YP_843327.1| - 2.5e-13 49.9 47.5 5e-06 26.6 12.5 3.0 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754209|ref|YP_843327.1| - 2.5e-13 50.4 70.6 5.7e-06 26.8 12.0 3.8 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116754209|ref|YP_843327.1| - 1.8e-12 47.2 28.5 5.7e-07 29.6 10.9 2.7 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754209|ref|YP_843327.1| - 2.6e-12 46.0 35.2 0.00013 21.8 3.9 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|116754209|ref|YP_843327.1| - 1.5e-11 45.0 22.2 0.0056 17.6 0.4 4.2 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|116754209|ref|YP_843327.1| - 2.4e-08 33.8 34.7 0.0012 19.2 2.7 4.6 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_11 PF13247.6 gi|116754209|ref|YP_843327.1| - 2.3e-07 30.9 11.2 2.3e-07 30.9 11.2 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|116754209|ref|YP_843327.1| - 5.8e-07 30.0 43.6 0.025 15.5 4.1 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|116754209|ref|YP_843327.1| - 1.3e-05 25.2 28.3 0.2 11.8 10.0 3.4 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|116754209|ref|YP_843327.1| - 5.8e-05 23.7 2.9 5.8e-05 23.7 2.9 4.1 2 2 1 3 3 3 1 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|116754209|ref|YP_843327.1| - 0.00011 22.6 27.7 0.061 13.9 1.8 3.8 1 1 3 5 5 5 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|116754209|ref|YP_843327.1| - 0.00015 22.1 27.9 0.038 14.4 7.5 3.5 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|116754209|ref|YP_843327.1| - 0.051 13.8 26.4 1.2 9.3 0.8 3.2 1 1 1 3 3 3 0 4Fe-4S dicluster domain DUF4258 PF14076.6 gi|116754209|ref|YP_843327.1| - 0.071 13.5 0.2 0.33 11.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4258) Fer4_22 PF17179.4 gi|116754209|ref|YP_843327.1| - 0.086 13.7 2.5 0.086 13.7 2.5 4.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain MafB19-deam PF14437.6 gi|116754209|ref|YP_843327.1| - 0.69 9.7 3.1 0.33 10.7 1.1 1.5 1 1 0 1 1 1 0 MafB19-like deaminase AFOR_C PF01314.18 gi|116754210|ref|YP_843328.1| - 2e-67 227.9 0.0 2.4e-67 227.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|116754210|ref|YP_843328.1| - 3.5e-66 222.9 0.1 5e-66 222.3 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain NTP_transferase PF00483.23 gi|116754211|ref|YP_843329.1| - 1.9e-32 112.8 0.0 2.3e-32 112.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|116754211|ref|YP_843329.1| - 1.3e-14 53.3 21.8 3.8e-10 39.1 0.8 4.6 2 1 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|116754211|ref|YP_843329.1| - 3.5e-13 50.2 0.0 4.8e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.12 gi|116754211|ref|YP_843329.1| - 0.0016 17.4 0.4 0.16 10.9 0.1 2.4 1 1 1 2 2 2 2 L-fucokinase Hexapep_2 PF14602.6 gi|116754211|ref|YP_843329.1| - 0.0049 16.6 3.3 0.0049 16.6 3.3 4.2 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|116754211|ref|YP_843329.1| - 0.018 14.8 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|116754211|ref|YP_843329.1| - 0.14 10.2 1.5 0.22 9.6 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) HTH_45 PF14947.6 gi|116754212|ref|YP_843330.1| - 1.9e-27 95.1 0.8 2.1e-27 94.9 0.8 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|116754212|ref|YP_843330.1| - 0.0013 18.5 0.1 0.0015 18.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) Pyr_redox_2 PF07992.14 gi|116754213|ref|YP_843331.1| - 1.1e-51 175.9 0.0 2e-51 175.0 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|116754213|ref|YP_843331.1| - 3.5e-23 82.0 0.3 6.3e-23 81.1 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|116754213|ref|YP_843331.1| - 2.3e-16 60.1 1.0 5.6e-16 58.9 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|116754213|ref|YP_843331.1| - 9.7e-07 28.3 0.1 3.1e-06 26.7 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|116754213|ref|YP_843331.1| - 7.4e-05 22.0 4.3 0.005 16.0 0.9 2.9 2 1 1 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|116754213|ref|YP_843331.1| - 0.0052 15.5 0.2 0.011 14.4 0.2 1.6 1 0 0 1 1 1 1 HI0933-like protein 3HCDH_N PF02737.18 gi|116754213|ref|YP_843331.1| - 0.083 12.8 0.6 0.42 10.5 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|116754213|ref|YP_843331.1| - 0.13 11.3 1.5 0.3 10.1 0.5 2.0 3 0 0 3 3 3 0 Lycopene cyclase protein YHS PF04945.13 gi|116754214|ref|YP_843332.1| - 5.3e-21 74.5 1.9 5.6e-21 74.4 1.9 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|116754214|ref|YP_843332.1| - 0.0022 18.3 0.7 0.0023 18.2 0.4 1.3 1 1 0 1 1 1 1 Archaeal TRASH domain ATPase-cat_bd PF12156.8 gi|116754214|ref|YP_843332.1| - 0.015 16.0 0.1 0.017 15.8 0.1 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase DUF2011 PF09428.10 gi|116754214|ref|YP_843332.1| - 0.063 13.5 0.0 0.063 13.5 0.0 1.1 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2011) FAP206 PF12018.8 gi|116754214|ref|YP_843332.1| - 0.18 11.3 0.1 0.2 11.1 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function E1-E2_ATPase PF00122.20 gi|116754215|ref|YP_843333.1| - 7.5e-58 195.0 0.9 2.1e-57 193.6 0.1 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|116754215|ref|YP_843333.1| - 4.2e-48 164.4 2.2 6.9e-48 163.7 2.2 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|116754215|ref|YP_843333.1| - 1.9e-33 114.7 1.8 4.4e-17 62.3 0.0 2.9 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|116754215|ref|YP_843333.1| - 3.5e-07 30.2 0.4 0.01 15.6 0.1 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|116754215|ref|YP_843333.1| - 0.0099 16.3 0.1 0.044 14.2 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Tox-PL-2 PF15643.6 gi|116754215|ref|YP_843333.1| - 0.013 15.6 0.1 0.07 13.3 0.0 2.1 1 1 1 2 2 2 0 Papain fold toxin 2 DUF1940 PF09155.10 gi|116754215|ref|YP_843333.1| - 0.17 12.0 0.6 27 4.8 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1940) Fer2_BFD PF04324.15 gi|116754215|ref|YP_843333.1| - 0.68 10.3 2.9 15 6.0 0.2 3.4 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain SHOCT PF09851.9 gi|116754216|ref|YP_843334.1| - 1.9e-08 33.7 1.7 2.9e-08 33.2 1.7 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF4199 PF13858.6 gi|116754216|ref|YP_843334.1| - 0.011 16.2 3.4 0.013 15.9 3.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) VbhA PF18495.1 gi|116754216|ref|YP_843334.1| - 0.027 14.3 0.1 0.045 13.6 0.1 1.3 1 0 0 1 1 1 0 Antitoxin VbhA Virul_fac_BrkB PF03631.15 gi|116754216|ref|YP_843334.1| - 0.04 13.5 4.7 0.049 13.2 4.7 1.0 1 0 0 1 1 1 0 Virulence factor BrkB Wzy_C_2 PF11846.8 gi|116754216|ref|YP_843334.1| - 0.12 12.3 0.4 0.14 12.1 0.4 1.1 1 0 0 1 1 1 0 Virulence factor membrane-bound polymerase, C-terminal DUF3099 PF11298.8 gi|116754216|ref|YP_843334.1| - 5.5 7.2 6.0 10 6.3 6.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) FeThRed_B PF02943.15 gi|116754217|ref|YP_843335.1| - 5.6e-22 77.8 0.1 5.6e-22 77.8 0.1 1.4 2 0 0 2 2 2 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.15 gi|116754217|ref|YP_843335.1| - 0.0019 17.7 1.6 0.0049 16.4 1.6 1.7 1 0 0 1 1 1 1 RecR protein zf-C4H2 PF10146.9 gi|116754217|ref|YP_843335.1| - 0.14 12.5 0.4 0.12 12.7 0.4 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein HypA PF01155.19 gi|116754217|ref|YP_843335.1| - 2.1 8.4 4.9 0.33 11.0 0.9 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Glutaredoxin PF00462.24 gi|116754218|ref|YP_843336.1| - 7.4e-13 48.5 0.0 1e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 gi|116754218|ref|YP_843336.1| - 2e-06 28.1 0.0 2.7e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|116754218|ref|YP_843336.1| - 0.00022 21.4 0.0 0.00029 21.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|116754218|ref|YP_843336.1| - 0.00078 19.7 0.0 0.00098 19.4 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain PI3K_p85B PF02192.16 gi|116754218|ref|YP_843336.1| - 0.047 13.4 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 PI3-kinase family, p85-binding domain AAL_decarboxy PF03306.13 gi|116754219|ref|YP_843337.1| - 5.9e-82 274.2 0.0 6.8e-82 274.0 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase ZYG-11_interact PF05884.12 gi|116754220|ref|YP_843338.1| - 0.12 11.8 0.3 0.27 10.6 0.0 1.6 2 0 0 2 2 2 0 Interactor of ZYG-11 HhH-GPD PF00730.25 gi|116754221|ref|YP_843339.1| - 3.6e-15 56.3 0.0 5.9e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.6 gi|116754221|ref|YP_843339.1| - 0.00013 22.5 0.1 0.075 13.6 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.23 gi|116754221|ref|YP_843339.1| - 0.00016 21.4 0.2 0.0019 18.0 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2400 PF09674.10 gi|116754221|ref|YP_843339.1| - 0.029 14.4 0.0 0.073 13.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) EndIII_4Fe-2S PF10576.9 gi|116754221|ref|YP_843339.1| - 0.036 14.4 5.1 0.061 13.7 5.1 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Transposase_20 PF02371.16 gi|116754221|ref|YP_843339.1| - 0.062 13.6 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family HHH_2 PF12826.7 gi|116754221|ref|YP_843339.1| - 0.071 13.2 0.0 15 5.7 0.0 2.4 1 1 1 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|116754221|ref|YP_843339.1| - 0.12 12.8 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 IMS family HHH motif Fer4_22 PF17179.4 gi|116754222|ref|YP_843340.1| - 1.6e-27 96.2 7.7 1.6e-27 96.2 7.7 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|116754222|ref|YP_843340.1| - 1.9e-07 31.5 8.1 0.00051 20.5 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|116754222|ref|YP_843340.1| - 2e-06 28.1 9.6 1.1e-05 25.8 9.6 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754222|ref|YP_843340.1| - 0.00032 20.8 9.4 0.026 14.6 2.5 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754222|ref|YP_843340.1| - 0.0022 18.5 13.4 0.16 12.6 14.4 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116754222|ref|YP_843340.1| - 0.017 15.2 16.4 0.11 12.6 16.4 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|116754222|ref|YP_843340.1| - 0.04 14.1 4.3 0.98 9.6 1.6 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116754222|ref|YP_843340.1| - 0.14 12.4 18.0 0.26 11.5 3.1 2.8 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|116754222|ref|YP_843340.1| - 1 9.3 24.5 0.065 13.1 4.1 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|116754222|ref|YP_843340.1| - 1.9 9.6 19.4 2.8 9.1 4.7 3.5 2 1 1 3 3 3 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|116754222|ref|YP_843340.1| - 6.5 7.1 22.8 0.11 12.7 3.0 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Molybdopterin PF00384.22 gi|116754223|ref|YP_843341.1| - 6.8e-88 295.5 0.0 8.1e-88 295.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|116754223|ref|YP_843341.1| - 6.4e-27 93.8 0.0 1.2e-26 92.9 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|116754223|ref|YP_843341.1| - 2.4e-11 43.4 0.7 5e-11 42.4 0.7 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain SIS PF01380.22 gi|116754223|ref|YP_843341.1| - 0.038 13.9 0.1 0.075 12.9 0.1 1.4 1 0 0 1 1 1 0 SIS domain DHODB_Fe-S_bind PF10418.9 gi|116754224|ref|YP_843342.1| - 9.3e-12 44.6 3.4 3e-11 42.9 3.4 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.6 gi|116754224|ref|YP_843342.1| - 0.16 12.0 0.4 0.28 11.2 0.4 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Molybdopterin PF00384.22 gi|116754225|ref|YP_843343.1| - 3.6e-90 303.0 0.0 4.6e-90 302.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|116754225|ref|YP_843343.1| - 1e-31 109.2 0.1 3.5e-31 107.5 0.0 2.0 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|116754225|ref|YP_843343.1| - 5.9e-18 64.7 1.4 7.4e-18 64.4 0.1 1.9 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Molybdop_Fe4S4 PF04879.16 gi|116754225|ref|YP_843343.1| - 2e-14 53.3 0.7 2e-14 53.3 0.7 3.0 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4 PF00037.27 gi|116754225|ref|YP_843343.1| - 7.9e-09 35.0 19.0 3.9e-07 29.6 1.7 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|116754225|ref|YP_843343.1| - 2e-08 33.6 10.1 0.00093 18.7 0.3 3.2 3 0 0 3 3 3 2 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_6 PF12837.7 gi|116754225|ref|YP_843343.1| - 2.3e-07 30.6 15.6 0.00012 22.0 0.6 3.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116754225|ref|YP_843343.1| - 0.00019 21.5 9.9 0.00019 21.5 9.9 4.0 4 1 1 5 5 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754225|ref|YP_843343.1| - 0.00032 20.8 5.2 0.00032 20.8 5.2 2.8 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754225|ref|YP_843343.1| - 0.00038 20.4 10.9 0.15 12.2 2.5 3.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|116754225|ref|YP_843343.1| - 0.0004 20.9 11.1 0.0004 20.9 11.1 4.2 2 1 2 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116754225|ref|YP_843343.1| - 0.00047 20.2 5.7 0.00047 20.2 5.7 3.4 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|116754225|ref|YP_843343.1| - 0.0094 16.8 21.0 0.033 15.1 6.1 3.9 3 0 0 3 3 2 2 4Fe-4S binding domain CDC48_N PF02359.18 gi|116754225|ref|YP_843343.1| - 0.039 14.1 0.0 0.16 12.1 0.0 2.1 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain DNA_gyraseA_C PF03989.13 gi|116754225|ref|YP_843343.1| - 0.046 13.2 0.0 0.098 12.2 0.0 1.6 1 0 0 1 1 1 0 DNA gyrase C-terminal domain, beta-propeller Fer4_15 PF13459.6 gi|116754225|ref|YP_843343.1| - 0.12 13.1 8.1 2.7 8.8 0.5 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|116754225|ref|YP_843343.1| - 7.9 7.1 10.3 11 6.6 1.8 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Cpn60_TCP1 PF00118.24 gi|116754226|ref|YP_843344.1| - 2.1e-173 577.5 9.3 2.6e-173 577.2 9.3 1.1 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.17 gi|116754226|ref|YP_843344.1| - 0.044 13.7 0.1 0.044 13.7 0.1 2.3 2 1 0 2 2 2 0 DAK2 domain Antiterm PF03589.13 gi|116754226|ref|YP_843344.1| - 0.086 13.2 0.3 40 4.6 0.0 3.7 2 1 1 3 3 3 0 Antitermination protein PrpR_N PF06506.11 gi|116754226|ref|YP_843344.1| - 0.17 11.5 2.4 1.3 8.6 0.0 3.2 4 0 0 4 4 4 0 Propionate catabolism activator MacB_PCD PF12704.7 gi|116754227|ref|YP_843345.1| - 1.4e-13 51.7 0.1 1.4e-13 51.7 0.1 2.3 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|116754227|ref|YP_843345.1| - 3.5e-10 40.2 7.1 6.7e-10 39.3 1.1 2.8 3 0 0 3 3 3 1 FtsX-like permease family ABC2_membrane_3 PF12698.7 gi|116754227|ref|YP_843345.1| - 0.13 11.4 3.7 0.2 10.7 3.7 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein MacB_PCD PF12704.7 gi|116754228|ref|YP_843346.1| - 2.3e-19 70.5 0.5 3e-19 70.1 0.5 1.2 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|116754228|ref|YP_843346.1| - 5e-15 55.7 4.7 5e-15 55.7 4.7 2.9 3 0 0 3 3 3 1 FtsX-like permease family SOR_SNZ PF01680.17 gi|116754229|ref|YP_843347.1| - 5.6e-105 349.6 10.0 5.6e-105 349.6 10.0 1.5 2 0 0 2 2 2 1 SOR/SNZ family ThiG PF05690.14 gi|116754229|ref|YP_843347.1| - 3.4e-08 33.1 12.2 1.2e-07 31.4 0.8 2.6 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|116754229|ref|YP_843347.1| - 3.6e-06 26.3 0.7 0.02 14.0 0.0 2.5 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|116754229|ref|YP_843347.1| - 8.7e-05 21.8 0.1 0.00088 18.5 0.0 2.1 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|116754229|ref|YP_843347.1| - 0.00017 21.1 5.4 0.00043 19.8 0.2 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|116754229|ref|YP_843347.1| - 0.00021 20.5 2.4 0.02 14.1 0.0 2.6 2 2 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.12 gi|116754229|ref|YP_843347.1| - 0.0076 15.5 1.4 0.19 10.9 0.1 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|116754229|ref|YP_843347.1| - 0.023 14.2 0.2 0.15 11.5 0.0 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein FMN_dh PF01070.18 gi|116754229|ref|YP_843347.1| - 0.033 13.2 1.1 0.046 12.7 0.0 1.8 2 1 1 3 3 3 0 FMN-dependent dehydrogenase TMP-TENI PF02581.17 gi|116754229|ref|YP_843347.1| - 0.042 13.2 1.7 1.6 8.0 0.1 2.3 2 0 0 2 2 2 0 Thiamine monophosphate synthase TetR_C_27 PF17935.1 gi|116754229|ref|YP_843347.1| - 0.087 12.9 0.0 0.32 11.1 0.0 1.9 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain SNO PF01174.19 gi|116754230|ref|YP_843348.1| - 9.8e-51 172.3 0.0 1.1e-50 172.1 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|116754230|ref|YP_843348.1| - 1.9e-09 37.4 0.0 2.2e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|116754230|ref|YP_843348.1| - 0.00017 21.3 0.0 0.00023 20.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|116754230|ref|YP_843348.1| - 0.00073 19.4 0.1 0.053 13.3 0.1 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|116754230|ref|YP_843348.1| - 0.0053 16.6 0.2 0.0088 15.9 0.2 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family BPL_N PF09825.9 gi|116754230|ref|YP_843348.1| - 0.013 14.6 0.0 0.028 13.5 0.0 1.4 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal Peptidase_M23 PF01551.22 gi|116754230|ref|YP_843348.1| - 0.076 13.2 0.2 0.39 11.0 0.0 2.1 2 0 0 2 2 2 0 Peptidase family M23 YabA PF06156.13 gi|116754231|ref|YP_843349.1| - 0.006 17.2 6.4 0.55 10.9 1.3 2.1 1 1 1 2 2 2 2 Initiation control protein YabA KASH_CCD PF14662.6 gi|116754231|ref|YP_843349.1| - 0.014 15.3 6.7 0.017 15.0 6.7 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Sec34 PF04136.15 gi|116754231|ref|YP_843349.1| - 0.02 14.8 1.8 0.18 11.7 0.1 2.0 1 1 1 2 2 2 0 Sec34-like family Spc7 PF08317.11 gi|116754231|ref|YP_843349.1| - 0.021 13.7 8.2 0.025 13.5 8.2 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein HAP1_N PF04849.13 gi|116754231|ref|YP_843349.1| - 0.046 12.9 8.2 0.057 12.6 8.2 1.0 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Synaptobrevin PF00957.21 gi|116754231|ref|YP_843349.1| - 0.055 13.3 6.6 14 5.6 0.2 3.1 1 1 2 3 3 3 0 Synaptobrevin Metal_resist PF13801.6 gi|116754231|ref|YP_843349.1| - 0.74 10.0 11.3 0.14 12.4 1.5 2.4 2 1 1 3 3 3 0 Heavy-metal resistance MIT PF04212.18 gi|116754231|ref|YP_843349.1| - 0.82 9.8 5.4 11 6.2 0.7 2.6 2 1 0 2 2 2 0 MIT (microtubule interacting and transport) domain kleA_kleC PF17383.2 gi|116754231|ref|YP_843349.1| - 1 9.7 10.7 4.2 7.7 1.1 3.1 1 1 0 2 2 2 0 Uncharacterized KorC regulated protein A ZapB PF06005.12 gi|116754231|ref|YP_843349.1| - 1.6 9.3 9.0 4.6 7.8 2.9 2.2 1 1 1 2 2 2 0 Cell division protein ZapB DUF1771 PF08590.10 gi|116754231|ref|YP_843349.1| - 2.2 8.7 5.5 4.5 7.7 2.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1771) Radical_SAM PF04055.21 gi|116754232|ref|YP_843350.1| - 1.2e-20 74.6 0.0 2.5e-20 73.5 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|116754232|ref|YP_843350.1| - 0.0032 17.8 0.4 0.0075 16.5 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain zinc_ribbon_4 PF13717.6 gi|116754232|ref|YP_843350.1| - 0.28 11.1 8.7 19 5.3 0.1 4.2 4 0 0 4 4 4 0 zinc-ribbon domain ZZ PF00569.17 gi|116754232|ref|YP_843350.1| - 0.41 10.5 7.7 16 5.4 0.5 3.4 3 0 0 3 3 3 0 Zinc finger, ZZ type NCD3G PF07562.14 gi|116754232|ref|YP_843350.1| - 9 6.4 8.9 0.9 9.6 0.1 3.0 3 0 0 3 3 3 0 Nine Cysteines Domain of family 3 GPCR Usp PF00582.26 gi|116754233|ref|YP_843351.1| - 1.1e-39 136.2 5.4 2.6e-21 76.6 1.2 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF5612 PF18462.1 gi|116754233|ref|YP_843351.1| - 0.022 14.6 2.4 0.43 10.4 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5612) DUF555 PF04475.12 gi|116754235|ref|YP_843353.1| - 1.8e-46 156.6 0.1 2e-46 156.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.12 gi|116754235|ref|YP_843353.1| - 0.072 13.4 0.1 0.15 12.4 0.1 1.5 1 0 0 1 1 1 0 Dodecin Rad51 PF08423.11 gi|116754236|ref|YP_843354.1| - 9.7e-34 116.8 0.2 1.1e-33 116.6 0.2 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|116754236|ref|YP_843354.1| - 5.3e-11 42.5 0.3 6.2e-11 42.3 0.3 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|116754236|ref|YP_843354.1| - 1.3e-10 41.0 4.2 1.2e-08 34.6 4.2 2.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|116754236|ref|YP_843354.1| - 1.9e-09 37.4 0.0 3.6e-09 36.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|116754236|ref|YP_843354.1| - 1.8e-07 31.1 0.0 2.6e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zot PF05707.12 gi|116754236|ref|YP_843354.1| - 1.4e-06 28.1 0.0 1.6e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) IstB_IS21 PF01695.17 gi|116754236|ref|YP_843354.1| - 0.00018 21.3 0.0 0.00037 20.3 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein CbiA PF01656.23 gi|116754236|ref|YP_843354.1| - 0.00019 21.5 0.0 0.00023 21.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain TrwB_AAD_bind PF10412.9 gi|116754236|ref|YP_843354.1| - 0.00064 18.7 0.4 0.0052 15.7 0.0 2.0 1 1 1 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DnaB_C PF03796.15 gi|116754236|ref|YP_843354.1| - 0.0014 18.0 2.9 0.35 10.2 0.4 2.3 2 1 1 3 3 3 2 DnaB-like helicase C terminal domain AAA PF00004.29 gi|116754236|ref|YP_843354.1| - 0.0028 18.1 0.1 0.005 17.3 0.1 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|116754236|ref|YP_843354.1| - 0.0039 17.4 0.0 0.0076 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|116754236|ref|YP_843354.1| - 0.0042 17.2 0.1 0.0075 16.4 0.1 1.4 1 1 0 1 1 1 1 Helicase HerA, central domain CobU PF02283.16 gi|116754236|ref|YP_843354.1| - 0.0081 15.7 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase ATPase_2 PF01637.18 gi|116754236|ref|YP_843354.1| - 0.02 14.8 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|116754236|ref|YP_843354.1| - 0.031 14.7 0.2 0.065 13.6 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_31 PF13614.6 gi|116754236|ref|YP_843354.1| - 0.087 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|116754236|ref|YP_843354.1| - 0.09 12.6 0.0 0.21 11.4 0.0 1.5 1 1 1 2 2 2 0 Bacterial dnaA protein IPT PF01745.16 gi|116754236|ref|YP_843354.1| - 0.11 11.9 0.1 6.6 6.0 0.0 2.2 2 0 0 2 2 2 0 Isopentenyl transferase ABC_tran PF00005.27 gi|116754236|ref|YP_843354.1| - 0.12 12.9 0.2 0.22 12.0 0.2 1.5 1 1 0 1 1 1 0 ABC transporter PAXNEB PF05625.11 gi|116754236|ref|YP_843354.1| - 0.18 10.9 0.3 2 7.4 0.2 2.0 2 0 0 2 2 2 0 PAXNEB protein Lactamase_B_2 PF12706.7 gi|116754237|ref|YP_843355.1| - 8e-26 90.8 0.0 2.4e-12 46.8 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|116754237|ref|YP_843355.1| - 1.1e-12 48.4 0.0 1.9e-10 41.1 0.0 2.6 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|116754237|ref|YP_843355.1| - 8.5e-09 35.0 0.0 1.7e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease DNase-RNase PF02577.14 gi|116754238|ref|YP_843356.1| - 5.6e-38 129.5 0.0 6.6e-38 129.3 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease tRNA-synt_1 PF00133.22 gi|116754239|ref|YP_843357.1| - 7.6e-197 655.3 0.1 1.1e-196 654.7 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|116754239|ref|YP_843357.1| - 3e-34 118.2 0.0 6.8e-34 117.0 0.0 1.6 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|116754239|ref|YP_843357.1| - 1.2e-27 96.6 1.2 1.5e-12 47.0 0.4 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|116754239|ref|YP_843357.1| - 1.8e-07 30.8 0.0 3.3e-05 23.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|116754239|ref|YP_843357.1| - 3.3e-05 23.0 0.0 0.00019 20.5 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) E1-E2_ATPase PF00122.20 gi|116754240|ref|YP_843358.1| - 2.6e-52 177.0 0.0 2.6e-52 177.0 0.0 3.2 3 1 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|116754240|ref|YP_843358.1| - 9e-18 64.6 10.2 9e-18 64.6 10.2 2.0 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.26 gi|116754240|ref|YP_843358.1| - 1.4e-17 63.2 0.0 3.4e-17 61.9 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase PF00702.26 gi|116754240|ref|YP_843358.1| - 1.1e-16 61.8 0.2 2.1e-16 60.9 0.2 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|116754240|ref|YP_843358.1| - 3.3e-05 23.9 0.0 7e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|116754240|ref|YP_843358.1| - 0.00013 21.8 0.5 0.00022 21.1 0.5 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF131 PF01998.17 gi|116754241|ref|YP_843359.1| - 4.5e-20 71.1 0.4 4.5e-20 71.1 0.4 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF131 DUF131 PF01998.17 gi|116754242|ref|YP_843360.1| - 4e-14 52.0 8.9 4e-14 52.0 8.9 2.0 2 0 0 2 2 2 1 Protein of unknown function DUF131 7TMR-DISM_7TM PF07695.11 gi|116754242|ref|YP_843360.1| - 1.2 9.0 14.2 1.8 8.4 2.0 2.0 1 1 1 2 2 2 0 7TM diverse intracellular signalling SHP PF03579.13 gi|116754242|ref|YP_843360.1| - 1.5 8.8 7.0 1.7 8.7 0.9 2.1 2 0 0 2 2 2 0 Small hydrophobic protein tRNA-synt_His PF13393.6 gi|116754243|ref|YP_843361.1| - 3.5e-61 207.2 0.3 1.3e-59 202.1 0.3 2.0 1 1 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|116754243|ref|YP_843361.1| - 2e-16 60.5 0.0 3.5e-16 59.7 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|116754243|ref|YP_843361.1| - 5e-09 36.2 0.3 1.2e-08 34.9 0.3 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|116754243|ref|YP_843361.1| - 0.00096 18.3 0.7 0.036 13.1 0.1 2.8 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) FANCI_S1-cap PF14674.6 gi|116754243|ref|YP_843361.1| - 0.15 12.1 0.6 0.4 10.8 0.6 1.7 1 0 0 1 1 1 0 FANCI solenoid 1 cap tRNA_synthFbeta PF17759.1 gi|116754243|ref|YP_843361.1| - 0.15 11.4 0.0 1 8.8 0.0 2.2 1 1 1 2 2 2 0 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2d PF01409.20 gi|116754243|ref|YP_843361.1| - 0.16 11.5 0.0 0.69 9.3 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) MgtE_N PF03448.17 gi|116754243|ref|YP_843361.1| - 0.98 10.1 3.7 0.44 11.2 0.5 2.0 2 0 0 2 2 2 0 MgtE intracellular N domain Peptidase_M42 PF05343.14 gi|116754244|ref|YP_843362.1| - 3.3e-102 341.4 0.3 3.8e-102 341.2 0.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|116754244|ref|YP_843362.1| - 3.6e-12 46.4 0.1 5e-12 46.0 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|116754244|ref|YP_843362.1| - 0.0068 16.1 0.1 0.58 9.8 0.0 2.4 2 1 0 2 2 2 2 Peptidase family M28 DUF2715 PF10895.8 gi|116754244|ref|YP_843362.1| - 0.055 13.1 0.0 1.1 8.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2715) FeoA PF04023.14 gi|116754244|ref|YP_843362.1| - 0.093 13.0 0.2 0.57 10.5 0.1 2.4 2 0 0 2 2 2 0 FeoA domain DUF98 PF01947.16 gi|116754245|ref|YP_843363.1| - 5.7e-31 107.5 0.0 1e-30 106.7 0.0 1.4 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase GHMP_kinases_N PF00288.26 gi|116754245|ref|YP_843363.1| - 1.3e-07 31.8 1.9 3.6e-07 30.3 1.9 1.9 1 0 0 1 1 1 1 GHMP kinases N terminal domain UTRA PF07702.13 gi|116754245|ref|YP_843363.1| - 2.5e-07 30.6 0.1 5.3e-07 29.6 0.1 1.6 1 0 0 1 1 1 1 UTRA domain GHMP_kinases_C PF08544.13 gi|116754245|ref|YP_843363.1| - 5.3e-07 29.9 0.4 0.00074 19.8 0.0 2.5 2 0 0 2 2 2 2 GHMP kinases C terminal HMG-CoA_red PF00368.18 gi|116754246|ref|YP_843364.1| - 1.6e-115 386.0 6.7 2e-115 385.7 6.7 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase PDT PF00800.18 gi|116754247|ref|YP_843365.1| - 9.4e-61 204.8 0.0 1.3e-60 204.3 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|116754247|ref|YP_843365.1| - 1.6e-12 47.0 0.0 3.1e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 ACT domain SBP_bac_3 PF00497.20 gi|116754247|ref|YP_843365.1| - 0.0096 15.4 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF3834 PF12916.7 gi|116754247|ref|YP_843365.1| - 0.028 13.7 0.0 0.045 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) DUF3135 PF11333.8 gi|116754247|ref|YP_843365.1| - 0.12 12.7 0.0 1.1 9.5 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3135) PIN_5 PF08745.11 gi|116754248|ref|YP_843366.1| - 2.9e-89 298.0 0.0 3.3e-89 297.8 0.0 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease TPR_12 PF13424.6 gi|116754249|ref|YP_843367.1| - 2.6e-35 120.6 11.3 6.6e-13 48.8 0.0 5.4 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|116754249|ref|YP_843367.1| - 1.4e-29 100.7 7.6 1.3e-06 27.9 0.1 7.6 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_7 PF13176.6 gi|116754249|ref|YP_843367.1| - 1.5e-28 96.7 4.4 0.00018 21.3 0.0 8.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|116754249|ref|YP_843367.1| - 7e-25 85.1 19.0 0.00013 21.8 0.0 8.0 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_10 PF13374.6 gi|116754249|ref|YP_843367.1| - 8.9e-21 73.1 13.6 0.018 14.9 0.0 7.5 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|116754249|ref|YP_843367.1| - 5.5e-20 69.9 8.0 0.00029 20.8 0.1 7.4 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|116754249|ref|YP_843367.1| - 3.9e-15 55.3 17.2 0.14 13.1 0.0 9.0 6 3 3 9 9 9 4 Tetratricopeptide repeat SNAP PF14938.6 gi|116754249|ref|YP_843367.1| - 2e-12 47.1 0.5 0.00091 18.7 0.0 4.2 1 1 3 4 4 4 3 Soluble NSF attachment protein, SNAP TPR_19 PF14559.6 gi|116754249|ref|YP_843367.1| - 2.1e-09 37.7 1.2 0.19 12.3 0.0 5.3 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|116754249|ref|YP_843367.1| - 5.7e-09 35.8 0.8 2.8e-05 23.7 0.1 2.4 1 1 1 2 2 2 2 MalT-like TPR region TPR_6 PF13174.6 gi|116754249|ref|YP_843367.1| - 8.6e-09 35.5 5.9 5.6 7.8 0.0 7.4 7 0 0 7 7 6 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|116754249|ref|YP_843367.1| - 4.8e-08 32.8 0.4 1.9 9.0 0.1 5.5 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|116754249|ref|YP_843367.1| - 1.3e-07 32.1 13.6 0.014 16.0 0.0 5.6 3 1 4 7 7 6 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|116754249|ref|YP_843367.1| - 2.4e-06 27.1 2.9 0.13 11.9 0.2 6.0 6 0 0 6 6 6 1 TPR repeat Foie-gras_1 PF11817.8 gi|116754249|ref|YP_843367.1| - 0.0044 16.6 7.3 0.31 10.6 0.1 3.7 3 1 0 4 4 4 2 Foie gras liver health family 1 RPN7 PF10602.9 gi|116754249|ref|YP_843367.1| - 0.0072 16.0 2.2 13 5.5 0.0 4.4 2 1 0 3 3 3 0 26S proteasome subunit RPN7 TPR_4 PF07721.14 gi|116754249|ref|YP_843367.1| - 0.012 16.2 11.8 2.1 9.2 0.0 6.1 7 0 0 7 7 5 0 Tetratricopeptide repeat Coat_F PF07875.12 gi|116754249|ref|YP_843367.1| - 0.085 13.1 0.0 0.26 11.6 0.0 1.8 1 0 0 1 1 1 0 Coat F domain TPR_21 PF09976.9 gi|116754249|ref|YP_843367.1| - 0.27 10.9 6.7 13 5.4 0.1 4.8 3 2 3 6 6 6 0 Tetratricopeptide repeat-like domain APP_E2 PF12925.7 gi|116754249|ref|YP_843367.1| - 0.28 10.9 1.1 18 5.0 0.0 2.3 2 0 0 2 2 2 0 E2 domain of amyloid precursor protein MIT PF04212.18 gi|116754249|ref|YP_843367.1| - 6.3 6.9 14.7 5.9 7.0 0.5 5.8 6 1 1 7 7 7 0 MIT (microtubule interacting and transport) domain UbiD PF01977.16 gi|116754250|ref|YP_843368.1| - 3.1e-96 322.7 1.7 3.5e-96 322.5 1.7 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Lactamase_B PF00753.27 gi|116754251|ref|YP_843369.1| - 2.1e-16 60.6 3.3 3.5e-12 46.8 0.9 2.1 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily Lar_N PF09861.9 gi|116754251|ref|YP_843369.1| - 0.0058 15.8 0.1 0.0084 15.3 0.1 1.2 1 0 0 1 1 1 1 Lactate racemase N-terminal domain Lactamase_B_2 PF12706.7 gi|116754251|ref|YP_843369.1| - 0.016 14.7 0.1 0.021 14.3 0.1 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain tRNA_anti-codon PF01336.25 gi|116754252|ref|YP_843370.1| - 4.2e-06 26.6 0.0 6.4e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|116754252|ref|YP_843370.1| - 0.00048 20.3 0.0 0.00078 19.6 0.0 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain UPF0047 PF01894.17 gi|116754253|ref|YP_843371.1| - 2.4e-34 117.9 0.0 2.8e-34 117.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Glycos_transf_4 PF00953.21 gi|116754254|ref|YP_843372.1| - 6.7e-33 113.9 17.6 6.7e-33 113.9 17.6 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 4 Wzz PF02706.15 gi|116754255|ref|YP_843373.1| - 3e-10 40.3 0.1 3e-10 40.3 0.1 2.5 3 1 0 3 3 3 1 Chain length determinant protein GNVR PF13807.6 gi|116754255|ref|YP_843373.1| - 1.4e-08 34.6 0.2 1.4e-08 34.6 0.2 1.7 2 0 0 2 2 2 1 G-rich domain on putative tyrosine kinase Acylphosphatase PF00708.18 gi|116754256|ref|YP_843374.1| - 3.1e-21 75.6 0.1 7.9e-21 74.3 0.0 1.7 2 0 0 2 2 2 1 Acylphosphatase CdvA PF18822.1 gi|116754256|ref|YP_843374.1| - 0.0079 16.0 3.0 0.014 15.2 3.0 1.5 1 0 0 1 1 1 1 CdvA-like coiled-coil domain CK2S PF15011.6 gi|116754256|ref|YP_843374.1| - 0.02 14.8 1.6 0.032 14.1 1.6 1.3 1 0 0 1 1 1 0 Casein Kinase 2 substrate TMPIT PF07851.13 gi|116754256|ref|YP_843374.1| - 0.25 10.6 1.7 0.37 10.0 1.7 1.2 1 0 0 1 1 1 0 TMPIT-like protein DUF4238 PF14022.6 gi|116754256|ref|YP_843374.1| - 0.78 9.2 4.0 3.7 7.0 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4238) Acylphosphatase PF00708.18 gi|116754258|ref|YP_843376.1| - 4.9e-22 78.1 0.4 1.1e-21 77.0 0.4 1.6 1 0 0 1 1 1 1 Acylphosphatase CdvA PF18822.1 gi|116754258|ref|YP_843376.1| - 9.1e-05 22.3 4.2 0.00022 21.1 4.2 1.6 1 0 0 1 1 1 1 CdvA-like coiled-coil domain CHDCT2 PF08074.11 gi|116754258|ref|YP_843376.1| - 0.0034 17.6 0.6 0.0063 16.7 0.5 1.4 2 0 0 2 2 2 1 CHDCT2 (NUC038) domain T2SSM_b PF10741.9 gi|116754258|ref|YP_843376.1| - 0.011 15.5 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b DUF1664 PF07889.12 gi|116754258|ref|YP_843376.1| - 0.032 14.3 1.9 0.059 13.4 1.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF1115 PF06544.12 gi|116754258|ref|YP_843376.1| - 0.048 13.8 1.1 0.13 12.4 0.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1115) SHNi-TPR PF10516.9 gi|116754258|ref|YP_843376.1| - 0.11 12.0 0.1 14 5.3 0.1 2.4 2 0 0 2 2 2 0 SHNi-TPR TPR_2 PF07719.17 gi|116754258|ref|YP_843376.1| - 0.12 12.5 0.2 7.3 7.0 0.0 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat FAM76 PF16046.5 gi|116754258|ref|YP_843376.1| - 0.16 11.3 2.7 0.22 10.9 2.7 1.1 1 0 0 1 1 1 0 FAM76 protein KxDL PF10241.9 gi|116754258|ref|YP_843376.1| - 0.22 11.8 4.7 0.36 11.1 4.1 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein UPF0242 PF06785.11 gi|116754258|ref|YP_843376.1| - 0.88 9.7 9.0 1.5 8.9 9.0 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Acylphosphatase PF00708.18 gi|116754259|ref|YP_843377.1| - 1.6e-21 76.5 0.3 4.2e-21 75.2 0.3 1.7 1 0 0 1 1 1 1 Acylphosphatase DUF3584 PF12128.8 gi|116754259|ref|YP_843377.1| - 0.00036 18.2 11.1 0.00047 17.8 11.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) CdvA PF18822.1 gi|116754259|ref|YP_843377.1| - 0.00049 19.9 6.8 0.00049 19.9 6.8 2.5 2 1 0 3 3 3 1 CdvA-like coiled-coil domain T2SSM_b PF10741.9 gi|116754259|ref|YP_843377.1| - 0.0015 18.3 0.0 0.0031 17.3 0.0 1.5 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M subtype b DUF3552 PF12072.8 gi|116754259|ref|YP_843377.1| - 0.0037 16.7 14.7 0.006 16.0 14.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) DUF745 PF05335.13 gi|116754259|ref|YP_843377.1| - 0.061 13.0 8.5 0.1 12.3 8.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF745) Spc7 PF08317.11 gi|116754259|ref|YP_843377.1| - 0.064 12.1 14.2 0.11 11.3 13.2 1.8 2 0 0 2 2 2 0 Spc7 kinetochore protein UPF0242 PF06785.11 gi|116754259|ref|YP_843377.1| - 0.12 12.5 17.4 0.16 12.1 16.9 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus GBP_C PF02841.14 gi|116754259|ref|YP_843377.1| - 0.16 11.4 14.0 0.19 11.1 14.0 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain TERB2 PF15101.6 gi|116754259|ref|YP_843377.1| - 0.16 12.0 2.4 0.2 11.7 2.4 1.1 1 0 0 1 1 1 0 Telomere-associated protein TERB2 DUF1115 PF06544.12 gi|116754259|ref|YP_843377.1| - 0.19 11.9 3.7 0.72 9.9 3.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1115) DUF1283 PF06932.11 gi|116754259|ref|YP_843377.1| - 0.26 11.5 7.4 2.6 8.3 2.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1283) Exonuc_VII_L PF02601.15 gi|116754259|ref|YP_843377.1| - 1.9 8.0 12.1 2.4 7.7 11.4 1.4 1 1 0 1 1 1 0 Exonuclease VII, large subunit TMPIT PF07851.13 gi|116754259|ref|YP_843377.1| - 1.9 7.6 8.5 2.8 7.1 8.5 1.1 1 0 0 1 1 1 0 TMPIT-like protein AAA_11 PF13086.6 gi|116754259|ref|YP_843377.1| - 2.4 7.9 10.8 3.4 7.4 10.8 1.4 1 1 0 1 1 1 0 AAA domain DUF1664 PF07889.12 gi|116754259|ref|YP_843377.1| - 3.4 7.7 11.3 7.6 6.6 10.2 2.2 2 1 0 2 2 1 0 Protein of unknown function (DUF1664) TBCA PF02970.16 gi|116754259|ref|YP_843377.1| - 3.5 8.0 17.7 2.4 8.6 7.8 2.7 1 1 1 2 2 2 0 Tubulin binding cofactor A Fib_alpha PF08702.10 gi|116754259|ref|YP_843377.1| - 4.3 7.5 10.5 15 5.7 10.5 2.0 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF16 PF01519.16 gi|116754259|ref|YP_843377.1| - 5.4 7.6 14.3 23 5.5 14.3 2.3 1 1 0 1 1 1 0 Protein of unknown function DUF16 Acylphosphatase PF00708.18 gi|116754260|ref|YP_843378.1| - 4.1e-21 75.2 0.6 9.6e-21 74.0 0.6 1.6 1 0 0 1 1 1 1 Acylphosphatase CdvA PF18822.1 gi|116754260|ref|YP_843378.1| - 0.0015 18.4 8.8 0.0017 18.2 7.2 2.0 2 1 0 2 2 2 1 CdvA-like coiled-coil domain DUF3552 PF12072.8 gi|116754260|ref|YP_843378.1| - 0.0038 16.7 11.9 0.0061 16.0 11.9 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) Spc7 PF08317.11 gi|116754260|ref|YP_843378.1| - 0.0088 15.0 7.9 0.018 13.9 7.6 1.6 2 0 0 2 2 2 1 Spc7 kinetochore protein CHDCT2 PF08074.11 gi|116754260|ref|YP_843378.1| - 0.048 13.8 3.0 0.081 13.1 3.0 1.4 1 0 0 1 1 1 0 CHDCT2 (NUC038) domain DUF1664 PF07889.12 gi|116754260|ref|YP_843378.1| - 0.065 13.3 6.7 0.065 13.3 5.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) SHNi-TPR PF10516.9 gi|116754260|ref|YP_843378.1| - 0.11 12.0 0.0 12 5.4 0.0 2.5 2 0 0 2 2 2 0 SHNi-TPR DUF1115 PF06544.12 gi|116754260|ref|YP_843378.1| - 0.11 12.5 2.9 0.57 10.3 2.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1115) FAM76 PF16046.5 gi|116754260|ref|YP_843378.1| - 0.19 11.1 5.8 0.31 10.4 5.8 1.3 1 0 0 1 1 1 0 FAM76 protein TMPIT PF07851.13 gi|116754260|ref|YP_843378.1| - 0.38 9.9 6.2 0.55 9.4 6.2 1.1 1 0 0 1 1 1 0 TMPIT-like protein KxDL PF10241.9 gi|116754260|ref|YP_843378.1| - 0.73 10.1 9.8 3.1 8.1 9.3 2.2 1 1 0 1 1 1 0 Uncharacterized conserved protein FadA PF09403.10 gi|116754260|ref|YP_843378.1| - 1 9.9 12.8 3.7 8.1 12.8 1.9 1 1 0 1 1 1 0 Adhesion protein FadA Fib_alpha PF08702.10 gi|116754260|ref|YP_843378.1| - 1.4 9.1 9.3 4.4 7.5 9.3 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Exonuc_VII_L PF02601.15 gi|116754260|ref|YP_843378.1| - 1.4 8.4 9.8 1.5 8.3 8.7 1.4 1 1 0 1 1 1 0 Exonuclease VII, large subunit DUF16 PF01519.16 gi|116754260|ref|YP_843378.1| - 2.2 8.8 13.2 2.8 8.5 10.7 2.3 1 1 0 2 2 2 0 Protein of unknown function DUF16 UPF0242 PF06785.11 gi|116754260|ref|YP_843378.1| - 2.4 8.2 16.3 4.6 7.3 15.8 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF1283 PF06932.11 gi|116754260|ref|YP_843378.1| - 2.9 8.2 5.2 3.4 7.9 2.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1283) TBCA PF02970.16 gi|116754260|ref|YP_843378.1| - 5.5 7.4 14.5 5.4 7.4 7.0 2.7 1 1 1 2 2 2 0 Tubulin binding cofactor A Acylphosphatase PF00708.18 gi|116754261|ref|YP_843379.1| - 2.4e-20 72.7 0.4 5.2e-20 71.7 0.4 1.6 1 0 0 1 1 1 1 Acylphosphatase CdvA PF18822.1 gi|116754261|ref|YP_843379.1| - 0.00033 20.5 4.4 0.00033 20.5 4.4 1.9 3 0 0 3 3 3 1 CdvA-like coiled-coil domain CHDCT2 PF08074.11 gi|116754261|ref|YP_843379.1| - 0.016 15.4 0.7 0.025 14.7 0.7 1.3 1 0 0 1 1 1 0 CHDCT2 (NUC038) domain FAM76 PF16046.5 gi|116754261|ref|YP_843379.1| - 0.035 13.5 2.7 0.047 13.0 2.7 1.2 1 0 0 1 1 1 0 FAM76 protein DUF1664 PF07889.12 gi|116754261|ref|YP_843379.1| - 0.043 13.9 4.0 0.041 13.9 2.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF1115 PF06544.12 gi|116754261|ref|YP_843379.1| - 0.046 13.8 0.3 0.18 11.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1115) T2SSM_b PF10741.9 gi|116754261|ref|YP_843379.1| - 0.069 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b UPF0227 PF05728.12 gi|116754261|ref|YP_843379.1| - 0.15 12.0 0.9 0.3 11.0 0.9 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) KxDL PF10241.9 gi|116754261|ref|YP_843379.1| - 0.16 12.3 4.7 0.25 11.6 4.2 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein DUF1283 PF06932.11 gi|116754261|ref|YP_843379.1| - 0.33 11.2 3.3 2.7 8.2 1.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1283) UPF0242 PF06785.11 gi|116754261|ref|YP_843379.1| - 0.54 10.3 8.5 1 9.4 8.5 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF737 PF05300.11 gi|116754261|ref|YP_843379.1| - 0.68 10.3 8.4 0.16 12.3 5.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF737) Fib_alpha PF08702.10 gi|116754261|ref|YP_843379.1| - 1.5 9.0 5.1 4.1 7.6 5.1 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family AAA_11 PF13086.6 gi|116754261|ref|YP_843379.1| - 2.4 7.9 6.0 3.9 7.2 6.0 1.5 1 1 0 1 1 1 0 AAA domain DUF16 PF01519.16 gi|116754261|ref|YP_843379.1| - 4.1 8.0 8.2 5.5 7.5 6.5 2.1 2 1 0 2 2 2 0 Protein of unknown function DUF16 ABC_tran_Xtn PF12848.7 gi|116754261|ref|YP_843379.1| - 8.8 6.4 8.9 49 4.1 9.2 2.0 1 1 0 1 1 1 0 ABC transporter UDPG_MGDP_dh_N PF03721.14 gi|116754262|ref|YP_843380.1| - 3.8e-56 189.6 0.0 5e-56 189.3 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|116754262|ref|YP_843380.1| - 2.8e-39 133.2 0.0 1e-38 131.4 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|116754262|ref|YP_843380.1| - 6.8e-16 58.6 0.0 7.4e-15 55.3 0.0 2.5 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pyr_redox PF00070.27 gi|116754262|ref|YP_843380.1| - 9e-05 23.0 0.2 9e-05 23.0 0.2 2.6 4 0 0 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|116754262|ref|YP_843380.1| - 0.00011 21.9 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|116754262|ref|YP_843380.1| - 0.00039 19.8 1.5 0.0015 17.9 1.4 1.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|116754262|ref|YP_843380.1| - 0.00095 18.5 0.2 0.0023 17.2 0.2 1.7 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|116754262|ref|YP_843380.1| - 0.0028 17.8 0.1 0.0028 17.8 0.1 3.0 4 0 0 4 4 3 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|116754262|ref|YP_843380.1| - 0.0055 16.6 0.3 0.017 15.0 0.3 1.9 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Rossmann-like PF10727.9 gi|116754262|ref|YP_843380.1| - 0.0064 16.3 0.0 0.021 14.7 0.1 1.8 2 0 0 2 2 2 1 Rossmann-like domain F420_oxidored PF03807.17 gi|116754262|ref|YP_843380.1| - 0.017 15.7 0.1 0.45 11.1 0.3 2.8 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.24 gi|116754262|ref|YP_843380.1| - 0.017 14.7 4.8 0.023 14.3 3.8 2.1 2 1 0 2 2 2 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|116754262|ref|YP_843380.1| - 0.019 13.7 1.0 0.11 11.1 0.5 2.0 1 1 1 2 2 2 0 HI0933-like protein FAD_binding_2 PF00890.24 gi|116754262|ref|YP_843380.1| - 0.028 13.5 0.8 0.18 10.8 0.3 2.1 2 0 0 2 2 2 0 FAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|116754262|ref|YP_843380.1| - 0.052 13.5 0.0 0.15 12.1 0.0 1.8 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|116754262|ref|YP_843380.1| - 0.056 13.7 0.3 0.43 10.8 0.0 2.6 3 0 0 3 3 3 0 TrkA-N domain RmlD_sub_bind PF04321.17 gi|116754263|ref|YP_843381.1| - 4.5e-97 324.6 0.0 5.4e-97 324.3 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|116754263|ref|YP_843381.1| - 9.1e-21 74.4 0.0 1.6e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|116754263|ref|YP_843381.1| - 2.2e-12 47.0 0.0 7.1e-12 45.4 0.0 1.8 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|116754263|ref|YP_843381.1| - 3.1e-11 43.0 0.2 1.6e-09 37.3 0.0 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|116754263|ref|YP_843381.1| - 3.6e-08 32.8 0.0 1.1e-07 31.2 0.0 1.8 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|116754263|ref|YP_843381.1| - 5.2e-07 29.1 0.0 1.7e-06 27.4 0.0 1.8 1 1 0 1 1 1 1 Male sterility protein NTP_transferase PF00483.23 gi|116754264|ref|YP_843382.1| - 4.9e-54 183.5 0.0 5.9e-54 183.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|116754264|ref|YP_843382.1| - 4.1e-11 43.5 0.0 5.9e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|116754264|ref|YP_843382.1| - 0.0005 19.7 9.5 0.0016 18.0 1.1 3.8 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|116754264|ref|YP_843382.1| - 0.00059 18.9 0.0 0.00079 18.5 0.0 1.2 1 0 0 1 1 1 1 L-fucokinase Bactofilin PF04519.13 gi|116754264|ref|YP_843382.1| - 0.15 12.4 2.7 1 9.7 0.2 2.3 2 0 0 2 2 2 0 Polymer-forming cytoskeletal dTDP_sugar_isom PF00908.17 gi|116754265|ref|YP_843383.1| - 4.2e-76 254.3 0.0 4.7e-76 254.2 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase GDP_Man_Dehyd PF16363.5 gi|116754266|ref|YP_843384.1| - 9.5e-83 278.3 0.0 1.1e-82 278.1 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|116754266|ref|YP_843384.1| - 1.8e-70 237.2 0.0 2.3e-70 236.8 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|116754266|ref|YP_843384.1| - 2e-20 73.0 0.0 2.5e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|116754266|ref|YP_843384.1| - 7.9e-19 67.8 0.0 1e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|116754266|ref|YP_843384.1| - 8.7e-16 57.9 0.0 5.6e-15 55.2 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|116754266|ref|YP_843384.1| - 1.3e-14 54.0 0.0 2.9e-13 49.6 0.0 2.5 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|116754266|ref|YP_843384.1| - 9.8e-10 38.6 0.0 1.5e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|116754266|ref|YP_843384.1| - 0.07 13.4 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|116754266|ref|YP_843384.1| - 0.08 12.4 0.0 0.8 9.1 0.0 2.2 1 1 0 1 1 1 0 short chain dehydrogenase Polysacc_synt PF01943.17 gi|116754268|ref|YP_843386.1| - 9.1e-14 51.5 24.5 9.1e-14 51.5 24.5 3.0 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|116754268|ref|YP_843386.1| - 8.4e-06 25.2 13.6 8.4e-06 25.2 13.6 3.3 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein FrhB_FdhB_C PF04432.13 gi|116754269|ref|YP_843387.1| - 2.4e-30 105.4 0.0 3.9e-30 104.7 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|116754269|ref|YP_843387.1| - 1.1e-13 51.1 0.0 1.9e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|116754269|ref|YP_843387.1| - 8.1e-08 31.8 14.5 3.8e-06 26.5 1.8 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|116754269|ref|YP_843387.1| - 4.7e-06 27.1 7.2 4.7e-06 27.1 7.2 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116754269|ref|YP_843387.1| - 1.2e-05 25.4 6.6 1.2e-05 25.4 6.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116754269|ref|YP_843387.1| - 5.7e-05 23.0 8.7 0.00025 21.0 0.6 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116754269|ref|YP_843387.1| - 6.8e-05 22.9 14.8 0.011 15.8 1.3 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754269|ref|YP_843387.1| - 0.0001 22.3 9.6 0.0001 22.3 9.6 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|116754269|ref|YP_843387.1| - 0.00093 19.7 12.1 0.0071 16.9 0.6 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|116754269|ref|YP_843387.1| - 0.0064 16.9 12.0 0.29 11.6 1.3 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754269|ref|YP_843387.1| - 0.0067 16.5 2.3 0.0067 16.5 2.3 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|116754269|ref|YP_843387.1| - 0.016 15.7 1.4 0.016 15.7 1.4 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|116754269|ref|YP_843387.1| - 0.022 15.6 0.5 0.022 15.6 0.5 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116754269|ref|YP_843387.1| - 0.058 14.3 0.8 0.058 14.3 0.8 2.9 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|116754269|ref|YP_843387.1| - 0.086 13.6 0.9 0.086 13.6 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|116754269|ref|YP_843387.1| - 0.53 10.9 8.5 0.19 12.3 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|116754269|ref|YP_843387.1| - 0.98 10.5 25.1 0.28 12.2 4.1 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain PS_pyruv_trans PF04230.13 gi|116754270|ref|YP_843388.1| - 6e-45 154.4 0.2 7e-45 154.1 0.2 1.0 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Glycos_transf_2 PF00535.26 gi|116754271|ref|YP_843389.1| - 6.6e-40 136.7 0.1 8.6e-40 136.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|116754271|ref|YP_843389.1| - 5.1e-24 85.2 0.1 7.3e-24 84.7 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|116754271|ref|YP_843389.1| - 3.9e-22 79.3 0.0 5.8e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|116754271|ref|YP_843389.1| - 0.00051 20.5 0.1 0.00095 19.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 GNT-I PF03071.15 gi|116754271|ref|YP_843389.1| - 0.0054 15.6 0.0 0.0073 15.1 0.0 1.2 1 0 0 1 1 1 1 GNT-I family Jacalin PF01419.17 gi|116754271|ref|YP_843389.1| - 0.1 12.5 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 Jacalin-like lectin domain Enolase_like_N PF18374.1 gi|116754272|ref|YP_843390.1| - 0.029 13.7 0.1 4.6 6.7 0.0 2.4 2 0 0 2 2 2 0 Enolase N-terminal domain-like Ribosomal_L2_C PF03947.18 gi|116754272|ref|YP_843390.1| - 0.039 14.2 0.6 0.044 14.0 0.6 1.3 1 1 0 1 1 1 0 Ribosomal Proteins L2, C-terminal domain Glycos_transf_2 PF00535.26 gi|116754274|ref|YP_843392.1| - 5.6e-16 58.8 0.1 7.4e-16 58.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|116754274|ref|YP_843392.1| - 0.0054 16.7 0.0 0.0087 16.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|116754274|ref|YP_843392.1| - 0.14 11.6 0.0 0.64 9.5 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|116754275|ref|YP_843393.1| - 1.7e-11 44.2 0.0 3.9e-11 43.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|116754275|ref|YP_843393.1| - 6.2e-09 36.1 0.0 8.8e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|116754275|ref|YP_843393.1| - 1.3e-06 28.4 0.1 7.9e-06 25.9 0.1 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.14 gi|116754275|ref|YP_843393.1| - 0.03 14.0 0.1 0.079 12.6 0.1 1.7 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase HTH_32 PF13565.6 gi|116754276|ref|YP_843394.1| - 8.5e-17 61.5 0.1 5e-16 59.1 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|116754276|ref|YP_843394.1| - 5.6e-15 55.1 0.3 3.3e-14 52.6 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|116754276|ref|YP_843394.1| - 6.5e-13 48.1 0.4 2.2e-10 40.0 0.1 2.5 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 gi|116754276|ref|YP_843394.1| - 6.6e-06 26.2 0.0 1.5e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DDE_3 PF13358.6 gi|116754277|ref|YP_843395.1| - 2.6e-26 92.1 0.0 3.4e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease Sulfotransfer_4 PF17784.1 gi|116754277|ref|YP_843395.1| - 0.014 15.2 0.3 0.025 14.4 0.2 1.4 1 1 0 1 1 1 0 Sulfotransferase domain Methyltransf_23 PF13489.6 gi|116754278|ref|YP_843396.1| - 7.3e-09 35.7 0.0 9.8e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116754278|ref|YP_843396.1| - 6.7e-08 33.1 0.0 1e-07 32.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|116754278|ref|YP_843396.1| - 2.1e-05 25.2 0.1 7.2e-05 23.5 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|116754278|ref|YP_843396.1| - 3.8e-05 23.5 0.1 0.00012 21.9 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116754278|ref|YP_843396.1| - 0.00021 22.0 0.0 0.0004 21.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain CheR PF01739.18 gi|116754278|ref|YP_843396.1| - 0.0051 16.3 0.0 0.0065 16.0 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain DDE_Tnp_1_5 PF13737.6 gi|116754279|ref|YP_843397.1| - 8.2e-33 113.1 0.0 3.2e-31 107.9 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|116754279|ref|YP_843397.1| - 9e-21 74.5 0.1 1.6e-20 73.7 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain Peripla_BP_2 PF01497.18 gi|116754280|ref|YP_843398.1| - 5.9e-29 101.3 0.0 7.6e-29 100.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|116754280|ref|YP_843398.1| - 0.011 15.9 0.9 0.027 14.7 0.9 1.7 1 0 0 1 1 1 0 Dockerin type I domain Ribosomal_S5_C PF03719.15 gi|116754280|ref|YP_843398.1| - 0.11 12.0 0.1 4.4 6.8 0.0 2.6 2 1 0 2 2 2 0 Ribosomal protein S5, C-terminal domain DUF3387 PF11867.8 gi|116754281|ref|YP_843399.1| - 2.3e-11 43.7 0.3 2.7e-11 43.4 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) OTCace PF00185.24 gi|116754282|ref|YP_843400.1| - 2.9e-53 180.1 0.0 4e-53 179.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|116754282|ref|YP_843400.1| - 5.4e-51 172.5 0.0 8.7e-51 171.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Molydop_binding PF01568.21 gi|116754283|ref|YP_843401.1| - 7.4e-19 67.8 0.0 9.2e-19 67.5 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TPP_enzyme_M PF00205.22 gi|116754284|ref|YP_843402.1| - 2.4e-05 24.1 0.0 0.38 10.5 0.0 3.2 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|116754284|ref|YP_843402.1| - 0.097 12.4 0.1 0.24 11.2 0.0 1.6 2 0 0 2 2 2 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit FeS PF04060.13 gi|116754285|ref|YP_843403.1| - 2.8e-14 52.5 1.8 2.8e-14 52.5 1.8 2.4 2 0 0 2 2 1 1 Putative Fe-S cluster Fer4 PF00037.27 gi|116754285|ref|YP_843403.1| - 2.7e-08 33.3 18.6 6.7e-07 28.9 4.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116754285|ref|YP_843403.1| - 7e-06 26.1 18.8 2.3e-05 24.4 12.6 3.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754285|ref|YP_843403.1| - 1.1e-05 26.0 20.1 0.0019 18.8 9.6 3.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116754285|ref|YP_843403.1| - 5e-05 23.4 8.6 5e-05 23.4 8.6 3.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754285|ref|YP_843403.1| - 0.00013 22.0 16.0 0.0017 18.5 2.8 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754285|ref|YP_843403.1| - 0.00023 21.0 2.6 0.00023 21.0 2.6 3.6 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|116754285|ref|YP_843403.1| - 0.00045 20.2 4.3 0.00045 20.2 4.3 3.4 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|116754285|ref|YP_843403.1| - 0.0011 19.6 5.2 0.0021 18.8 0.8 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|116754285|ref|YP_843403.1| - 0.0012 19.3 15.6 0.012 16.0 6.0 3.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|116754285|ref|YP_843403.1| - 0.0054 17.6 22.9 0.089 13.8 7.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|116754285|ref|YP_843403.1| - 0.0082 17.1 12.7 0.0082 17.1 12.7 3.0 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|116754285|ref|YP_843403.1| - 0.018 15.6 5.5 0.018 15.6 5.5 3.1 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|116754285|ref|YP_843403.1| - 0.025 15.0 3.2 0.025 15.0 3.2 3.9 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|116754285|ref|YP_843403.1| - 0.11 13.0 14.0 0.89 10.1 9.4 3.0 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CCG PF02754.16 gi|116754287|ref|YP_843405.1| - 8.3e-30 102.8 11.1 7.5e-16 58.1 0.0 2.8 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|116754287|ref|YP_843405.1| - 6.8e-09 36.1 3.5 6.8e-09 36.1 3.5 3.4 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116754287|ref|YP_843405.1| - 3e-06 28.1 4.9 3e-06 28.1 4.9 3.2 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|116754287|ref|YP_843405.1| - 3.1e-06 27.3 6.0 3.1e-06 27.3 6.0 3.9 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|116754287|ref|YP_843405.1| - 3.1e-06 27.6 4.5 3.1e-06 27.6 4.5 3.3 5 0 0 5 5 5 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754287|ref|YP_843405.1| - 3.4e-06 27.6 7.7 3.4e-06 27.6 7.7 3.5 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116754287|ref|YP_843405.1| - 7.5e-05 22.8 9.0 7.5e-05 22.8 9.0 3.7 4 1 1 5 5 5 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|116754287|ref|YP_843405.1| - 0.13 13.2 15.0 6.2 7.7 0.3 4.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|116754287|ref|YP_843405.1| - 0.16 12.2 5.0 4.3 7.6 0.6 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754287|ref|YP_843405.1| - 0.66 10.2 17.5 0.23 11.7 2.2 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Nitrate_red_gam PF02665.14 gi|116754288|ref|YP_843406.1| - 0.00024 20.7 19.3 0.0082 15.7 5.4 3.1 1 1 2 3 3 3 3 Nitrate reductase gamma subunit HTH_34 PF13601.6 gi|116754289|ref|YP_843407.1| - 0.0008 19.5 0.0 0.0017 18.5 0.0 1.5 1 1 1 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|116754289|ref|YP_843407.1| - 0.0033 17.3 0.7 0.061 13.2 0.2 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|116754289|ref|YP_843407.1| - 0.0049 16.8 0.2 0.013 15.5 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family SMC_ScpB PF04079.16 gi|116754289|ref|YP_843407.1| - 0.018 14.6 0.2 0.036 13.7 0.1 1.6 1 1 1 2 2 2 0 Segregation and condensation complex subunit ScpB ThiS PF02597.20 gi|116754290|ref|YP_843408.1| - 0.0015 19.1 0.1 0.0017 19.0 0.1 1.1 1 0 0 1 1 1 1 ThiS family SPP PF06550.11 gi|116754292|ref|YP_843410.1| - 1.4e-73 247.8 22.7 1.7e-73 247.6 22.7 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|116754292|ref|YP_843410.1| - 2.3e-09 37.2 8.7 5.3e-09 36.0 8.7 1.6 1 1 0 1 1 1 1 Signal peptide peptidase DNA_ligase_A_N PF04675.14 gi|116754293|ref|YP_843411.1| - 5.2e-14 52.9 0.0 3.7e-10 40.4 0.0 2.6 2 1 1 3 3 3 2 DNA ligase N terminus DNA_ligase_A_M PF01068.21 gi|116754293|ref|YP_843411.1| - 1e-05 25.3 0.1 2.3e-05 24.1 0.1 1.5 1 1 0 1 1 1 1 ATP dependent DNA ligase domain Metalloenzyme PF01676.18 gi|116754294|ref|YP_843412.1| - 1.2e-11 44.4 0.0 2.8e-11 43.2 0.0 1.6 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|116754294|ref|YP_843412.1| - 4.5e-11 42.9 0.2 8.9e-08 32.1 0.0 2.5 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|116754294|ref|YP_843412.1| - 2.3e-10 40.4 0.0 3.6e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Alk_phosphatase PF00245.20 gi|116754294|ref|YP_843412.1| - 0.00044 19.3 0.0 0.0013 17.7 0.0 1.7 2 0 0 2 2 2 1 Alkaline phosphatase TcfC PF16967.5 gi|116754294|ref|YP_843412.1| - 0.0012 18.3 0.1 0.0024 17.3 0.1 1.4 1 0 0 1 1 1 1 E-set like domain Fae PF08714.11 gi|116754295|ref|YP_843413.1| - 1.1e-72 243.2 0.3 2e-72 242.3 0.3 1.5 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|116754295|ref|YP_843413.1| - 4.3e-19 69.0 1.0 1.5e-18 67.2 1.0 1.9 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|116754295|ref|YP_843413.1| - 6.9e-05 22.3 1.7 0.00046 19.6 1.7 2.3 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 gi|116754295|ref|YP_843413.1| - 0.00024 20.9 0.2 0.00056 19.7 0.1 1.6 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PcrB PF01884.17 gi|116754295|ref|YP_843413.1| - 0.0033 16.9 0.5 0.19 11.2 0.1 2.3 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.21 gi|116754295|ref|YP_843413.1| - 0.008 15.7 0.1 0.015 14.7 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|116754295|ref|YP_843413.1| - 0.023 13.8 0.8 0.054 12.5 0.8 1.6 1 1 0 1 1 1 0 FMN-dependent dehydrogenase NanE PF04131.14 gi|116754295|ref|YP_843413.1| - 0.034 13.3 0.1 0.064 12.4 0.1 1.6 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|116754295|ref|YP_843413.1| - 0.064 12.4 0.6 0.15 11.2 0.2 1.9 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase TMP-TENI PF02581.17 gi|116754295|ref|YP_843413.1| - 0.067 12.5 0.7 0.12 11.7 0.2 1.6 2 0 0 2 2 2 0 Thiamine monophosphate synthase PRAI PF00697.22 gi|116754295|ref|YP_843413.1| - 0.22 11.2 1.2 1.6 8.5 0.1 2.5 2 1 1 3 3 3 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PseudoU_synth_1 PF01416.20 gi|116754296|ref|YP_843414.1| - 6.9e-30 103.7 0.0 3.6e-24 85.3 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase Aconitase PF00330.20 gi|116754297|ref|YP_843415.1| - 7.5e-95 318.6 1.4 1.3e-92 311.2 1.4 2.4 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Amidohydro_1 PF01979.20 gi|116754298|ref|YP_843416.1| - 2.9e-63 214.3 0.0 3.3e-63 214.1 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|116754298|ref|YP_843416.1| - 3.7e-17 63.0 0.3 1e-10 41.7 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|116754298|ref|YP_843416.1| - 6.3e-05 22.5 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase THUMP PF02926.17 gi|116754299|ref|YP_843417.1| - 2.4e-10 40.7 0.0 4.2e-09 36.6 0.0 2.6 2 1 0 2 2 2 1 THUMP domain TruB_N PF01509.18 gi|116754299|ref|YP_843417.1| - 0.049 14.0 0.0 0.6 10.5 0.0 2.3 1 1 0 1 1 1 0 TruB family pseudouridylate synthase (N terminal domain) Ribosomal_L21e PF01157.18 gi|116754300|ref|YP_843418.1| - 3.8e-34 116.6 0.9 4.2e-34 116.4 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|116754301|ref|YP_843419.1| - 1e-10 42.0 0.9 1.7e-10 41.3 0.9 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb4 EF-hand_8 PF13833.6 gi|116754301|ref|YP_843419.1| - 0.012 15.5 0.2 0.046 13.6 0.0 2.0 3 0 0 3 3 3 0 EF-hand domain pair SelB-wing_2 PF09106.11 gi|116754301|ref|YP_843419.1| - 0.021 15.0 0.5 8.8 6.6 0.1 2.5 2 0 0 2 2 2 0 Elongation factor SelB, winged helix DNA_ligase_A_N PF04675.14 gi|116754301|ref|YP_843419.1| - 0.042 14.2 0.2 0.074 13.4 0.2 1.4 1 0 0 1 1 1 0 DNA ligase N terminus HRDC PF00570.23 gi|116754301|ref|YP_843419.1| - 0.086 12.8 1.1 11 6.1 0.4 2.7 2 1 0 2 2 2 0 HRDC domain NleF_casp_inhib PF16809.5 gi|116754301|ref|YP_843419.1| - 0.11 12.5 0.1 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 NleF caspase inhibitor FumaraseC_C PF10415.9 gi|116754301|ref|YP_843419.1| - 0.16 12.4 5.6 0.35 11.3 0.3 3.0 2 1 1 3 3 3 0 Fumarase C C-terminus DUF655 PF04919.12 gi|116754302|ref|YP_843420.1| - 2.6e-62 210.0 0.1 3e-62 209.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|116754302|ref|YP_843420.1| - 3e-06 27.4 0.0 5.9e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|116754302|ref|YP_843420.1| - 9.9e-05 22.5 0.0 0.00022 21.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif RC-P840_PscD PF10657.9 gi|116754302|ref|YP_843420.1| - 0.024 14.7 0.1 0.047 13.8 0.0 1.5 2 0 0 2 2 2 0 Photosystem P840 reaction centre protein PscD HTH_AsnC-type PF13404.6 gi|116754302|ref|YP_843420.1| - 0.064 13.1 0.0 1.8 8.4 0.1 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain RrnaAD PF00398.20 gi|116754303|ref|YP_843421.1| - 5.2e-53 179.8 0.0 6e-53 179.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|116754303|ref|YP_843421.1| - 8.7e-08 32.8 0.0 1.8e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116754303|ref|YP_843421.1| - 6.7e-05 23.5 0.0 0.00013 22.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|116754303|ref|YP_843421.1| - 0.0095 15.7 0.0 0.031 14.0 0.0 1.7 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|116754303|ref|YP_843421.1| - 0.01 15.6 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.18 gi|116754303|ref|YP_843421.1| - 0.019 15.2 0.0 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_31 PF13847.6 gi|116754303|ref|YP_843421.1| - 0.036 13.9 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|116754303|ref|YP_843421.1| - 0.053 13.5 0.0 0.082 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|116754303|ref|YP_843421.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain MetW PF07021.12 gi|116754303|ref|YP_843421.1| - 0.12 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Rod_C PF10493.9 gi|116754303|ref|YP_843421.1| - 0.23 9.8 0.0 0.32 9.3 0.0 1.1 1 0 0 1 1 1 0 Rough deal protein C-terminal region DsbD PF02683.15 gi|116754304|ref|YP_843422.1| - 4.8e-20 72.4 16.0 6.4e-20 72.0 16.0 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|116754304|ref|YP_843422.1| - 2.9e-12 47.0 17.9 5.5e-09 36.2 13.1 2.2 1 1 1 2 2 2 2 Cytochrome C biogenesis protein transmembrane region TraF PF13728.6 gi|116754305|ref|YP_843423.1| - 0.21 11.4 0.0 0.25 11.2 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein DUF2340 PF10209.9 gi|116754306|ref|YP_843424.1| - 0.13 12.7 0.0 0.44 11.0 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2340) Hist_deacetyl PF00850.19 gi|116754307|ref|YP_843425.1| - 1.5e-32 113.3 2.3 3.8e-24 85.7 0.4 3.0 2 1 1 3 3 3 3 Histone deacetylase domain GATase_3 PF07685.14 gi|116754308|ref|YP_843426.1| - 1.9e-40 138.6 0.0 2.6e-40 138.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|116754308|ref|YP_843426.1| - 5e-19 68.9 0.2 7.3e-11 42.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|116754308|ref|YP_843426.1| - 2.1e-18 66.6 0.0 3.4e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_S51 PF03575.17 gi|116754308|ref|YP_843426.1| - 0.0075 15.9 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DUF1611 PF07755.11 gi|116754308|ref|YP_843426.1| - 0.01 15.1 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain AAA_25 PF13481.6 gi|116754308|ref|YP_843426.1| - 0.029 13.9 0.0 0.064 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain SNO PF01174.19 gi|116754308|ref|YP_843426.1| - 0.059 13.2 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family GlpM PF06942.12 gi|116754308|ref|YP_843426.1| - 0.11 13.0 0.0 0.26 11.7 0.0 1.6 1 0 0 1 1 1 0 GlpM protein FTHFS PF01268.19 gi|116754308|ref|YP_843426.1| - 0.12 10.6 0.1 0.17 10.0 0.1 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase MobB PF03205.14 gi|116754308|ref|YP_843426.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|116754308|ref|YP_843426.1| - 0.17 11.8 0.2 0.56 10.1 0.2 1.8 2 0 0 2 2 2 0 NTPase Asparaginase PF00710.20 gi|116754309|ref|YP_843427.1| - 3.2e-63 212.7 0.5 5.6e-63 212.0 0.4 1.4 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|116754309|ref|YP_843427.1| - 7.4e-31 106.7 0.0 3.5e-30 104.6 0.0 2.0 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|116754309|ref|YP_843427.1| - 2.7e-16 58.6 0.3 6.1e-16 57.5 0.3 1.6 1 0 0 1 1 1 1 GatD N-terminal domain Gly_reductase PF09338.11 gi|116754309|ref|YP_843427.1| - 0.016 13.6 0.0 0.028 12.8 0.0 1.3 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase component B subunits Peripla_BP_4 PF13407.6 gi|116754309|ref|YP_843427.1| - 0.026 14.1 0.0 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 Periplasmic binding protein domain His_biosynth PF00977.21 gi|116754310|ref|YP_843428.1| - 4.3e-72 242.3 0.2 4.8e-72 242.1 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|116754310|ref|YP_843428.1| - 8.6e-09 35.2 1.3 8.8e-07 28.6 0.2 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 gi|116754310|ref|YP_843428.1| - 9.4e-08 31.5 0.1 0.0095 15.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 gi|116754310|ref|YP_843428.1| - 2.6e-06 26.9 0.6 0.00055 19.3 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase ThiG PF05690.14 gi|116754310|ref|YP_843428.1| - 3.4e-06 26.6 1.4 0.0038 16.6 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|116754310|ref|YP_843428.1| - 4e-06 26.2 0.1 0.0024 17.2 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|116754310|ref|YP_843428.1| - 0.00023 20.7 0.2 0.24 10.8 0.0 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|116754310|ref|YP_843428.1| - 0.00059 18.9 1.0 0.26 10.2 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain IGPS PF00218.21 gi|116754310|ref|YP_843428.1| - 0.001 18.3 0.0 0.079 12.1 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|116754310|ref|YP_843428.1| - 0.02 14.1 0.2 2.3 7.3 0.1 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.17 gi|116754310|ref|YP_843428.1| - 0.033 13.7 0.6 0.18 11.2 0.1 2.0 2 0 0 2 2 2 0 PcrB family DUF561 PF04481.12 gi|116754310|ref|YP_843428.1| - 0.036 13.2 0.1 0.057 12.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF561) PEP_mutase PF13714.6 gi|116754310|ref|YP_843428.1| - 0.059 12.8 0.1 0.81 9.1 0.0 2.1 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Ribul_P_3_epim PF00834.19 gi|116754310|ref|YP_843428.1| - 0.068 12.6 0.7 7.4 5.9 0.1 2.3 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family DeoC PF01791.9 gi|116754310|ref|YP_843428.1| - 0.085 12.5 0.2 0.31 10.6 0.0 1.8 2 0 0 2 2 2 0 DeoC/LacD family aldolase FMN_dh PF01070.18 gi|116754310|ref|YP_843428.1| - 0.14 11.2 4.6 0.74 8.8 0.8 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase AdoHcyase PF05221.17 gi|116754311|ref|YP_843429.1| - 3.9e-66 223.2 0.0 9.6e-39 133.3 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|116754311|ref|YP_843429.1| - 7e-51 172.5 0.2 1.7e-50 171.2 0.0 1.8 3 0 0 3 3 3 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|116754311|ref|YP_843429.1| - 4e-09 36.1 0.6 1.1e-08 34.7 0.1 2.0 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|116754311|ref|YP_843429.1| - 1.7e-07 30.9 0.0 2.9e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|116754311|ref|YP_843429.1| - 0.011 16.0 0.0 0.04 14.2 0.0 2.0 1 0 0 1 1 1 0 TrkA-N domain Oxidored_nitro PF00148.19 gi|116754311|ref|YP_843429.1| - 0.041 12.6 0.1 0.33 9.6 0.0 2.0 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase Pyr_redox_2 PF07992.14 gi|116754311|ref|YP_843429.1| - 0.073 12.3 0.1 0.25 10.5 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|116754311|ref|YP_843429.1| - 0.084 12.1 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain APH PF01636.23 gi|116754312|ref|YP_843430.1| - 1.4e-11 44.8 0.2 1.8e-11 44.4 0.2 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|116754312|ref|YP_843430.1| - 0.17 11.5 0.0 0.54 9.8 0.0 1.8 2 0 0 2 2 2 0 RIO1 family UPF0020 PF01170.18 gi|116754313|ref|YP_843431.1| - 1.2e-24 87.0 0.0 6.9e-24 84.6 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|116754313|ref|YP_843431.1| - 1.1e-08 35.6 0.0 6.7e-08 33.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116754313|ref|YP_843431.1| - 6.8e-07 29.9 0.0 2e-06 28.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.17 gi|116754313|ref|YP_843431.1| - 1.7e-05 25.0 0.0 2.9e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 THUMP domain N6_N4_Mtase PF01555.18 gi|116754313|ref|YP_843431.1| - 0.00075 19.3 0.0 0.048 13.4 0.0 2.2 2 0 0 2 2 2 1 DNA methylase Cons_hypoth95 PF03602.15 gi|116754313|ref|YP_843431.1| - 0.0053 16.4 0.0 0.027 14.1 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical protein 95 AviRa PF11599.8 gi|116754313|ref|YP_843431.1| - 0.031 13.8 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa DUF1724 PF08350.10 gi|116754314|ref|YP_843432.1| - 1e-16 60.8 0.0 2.1e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|116754314|ref|YP_843432.1| - 0.0025 17.7 0.1 0.0057 16.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|116754314|ref|YP_843432.1| - 0.003 17.4 0.1 0.0057 16.5 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|116754314|ref|YP_843432.1| - 0.05 13.7 0.2 0.11 12.6 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF948 PF06103.11 gi|116754315|ref|YP_843433.1| - 2 8.7 5.6 7.2 6.9 0.5 3.0 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) E1-E2_ATPase PF00122.20 gi|116754316|ref|YP_843434.1| - 3.6e-53 179.8 3.0 3.6e-53 179.8 3.0 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|116754316|ref|YP_843434.1| - 1.2e-37 129.4 1.9 1.2e-37 129.4 1.9 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|116754316|ref|YP_843434.1| - 9.6e-19 68.5 5.8 1.2e-17 65.0 5.8 2.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|116754316|ref|YP_843434.1| - 1.5e-17 63.4 0.0 3.7e-17 62.2 0.0 1.7 2 0 0 2 2 2 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|116754316|ref|YP_843434.1| - 3.9e-07 30.1 1.1 0.0011 18.7 0.7 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|116754316|ref|YP_843434.1| - 3.2e-06 27.7 0.2 1e-05 26.0 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Isochorismatase PF00857.20 gi|116754316|ref|YP_843434.1| - 0.027 14.6 0.2 1.7 8.8 0.0 2.6 1 1 1 2 2 2 0 Isochorismatase family MS_channel PF00924.18 gi|116754317|ref|YP_843435.1| - 1.1e-38 132.8 0.2 1.7e-38 132.3 0.2 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel Radical_SAM PF04055.21 gi|116754318|ref|YP_843436.1| - 2.8e-20 73.3 1.5 1.2e-19 71.3 0.9 2.1 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|116754318|ref|YP_843436.1| - 6e-11 42.8 0.0 9.1e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|116754318|ref|YP_843436.1| - 2.6e-08 34.0 0.0 1.1e-07 32.0 0.0 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain AAA_17 PF13207.6 gi|116754319|ref|YP_843437.1| - 9.8e-17 61.6 0.1 1.5e-16 61.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|116754319|ref|YP_843437.1| - 1.8e-14 54.4 0.1 2.6e-14 53.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|116754319|ref|YP_843437.1| - 6.7e-08 32.8 0.0 9.2e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|116754319|ref|YP_843437.1| - 0.03 14.0 0.1 0.15 11.7 0.0 1.9 2 0 0 2 2 2 0 Dephospho-CoA kinase ADK PF00406.22 gi|116754319|ref|YP_843437.1| - 0.033 14.3 0.0 0.038 14.1 0.0 1.3 1 0 0 1 1 1 0 Adenylate kinase Zn-ribbon_8 PF09723.10 gi|116754320|ref|YP_843438.1| - 3e-05 24.0 0.5 4.7e-05 23.4 0.5 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|116754320|ref|YP_843438.1| - 0.00031 20.7 0.3 0.00035 20.5 0.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|116754320|ref|YP_843438.1| - 0.0013 18.7 0.3 0.0014 18.6 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TFIIS_C PF01096.18 gi|116754320|ref|YP_843438.1| - 0.0071 16.2 2.0 0.73 9.7 0.1 2.1 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) FYDLN_acid PF09538.10 gi|116754320|ref|YP_843438.1| - 0.014 16.1 0.4 0.015 16.0 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_9 PF14369.6 gi|116754320|ref|YP_843438.1| - 0.019 15.2 0.4 6.9 7.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon zf-LYAR PF08790.11 gi|116754320|ref|YP_843438.1| - 0.02 14.8 0.1 0.032 14.2 0.1 1.3 1 0 0 1 1 1 0 LYAR-type C2HC zinc finger TackOD1 PF18551.1 gi|116754320|ref|YP_843438.1| - 0.027 14.1 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 TF_Zn_Ribbon PF08271.12 gi|116754320|ref|YP_843438.1| - 0.03 13.8 4.1 1.9 8.1 0.4 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C3HC4_3 PF13920.6 gi|116754320|ref|YP_843438.1| - 0.034 14.0 1.1 0.043 13.7 1.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_ribbon_SprT PF17283.2 gi|116754320|ref|YP_843438.1| - 0.046 13.6 0.7 2.4 8.1 0.0 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-trcl PF13451.6 gi|116754320|ref|YP_843438.1| - 0.25 11.2 1.9 2.9 7.9 0.2 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|116754320|ref|YP_843438.1| - 0.37 10.6 2.8 6.7 6.5 2.8 2.1 1 1 0 1 1 1 0 Rubredoxin metal binding domain IGPD PF00475.18 gi|116754322|ref|YP_843440.1| - 2e-28 99.5 0.4 3.7e-28 98.7 0.1 1.5 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase DUF4265 PF14085.6 gi|116754322|ref|YP_843440.1| - 0.12 12.3 0.0 0.98 9.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) PgpA PF04608.13 gi|116754323|ref|YP_843441.1| - 3.2e-09 37.0 0.0 5.4e-09 36.2 0.0 1.4 1 1 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.15 gi|116754324|ref|YP_843442.1| - 1.8e-38 132.8 14.9 2.1e-38 132.6 14.9 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CbiQ PF02361.16 gi|116754324|ref|YP_843442.1| - 0.072 12.7 0.5 0.072 12.7 0.5 2.7 3 0 0 3 3 3 0 Cobalt transport protein RseC_MucC PF04246.12 gi|116754324|ref|YP_843442.1| - 8.6 6.3 13.7 1.7 8.6 1.7 3.2 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC NTP_transf_3 PF12804.7 gi|116754325|ref|YP_843443.1| - 1.4e-18 67.8 0.0 1.7e-18 67.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|116754325|ref|YP_843443.1| - 1.4e-05 25.2 0.0 3.1e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase CofC PF01983.16 gi|116754325|ref|YP_843443.1| - 0.0026 17.0 0.0 0.0051 16.0 0.0 1.5 2 0 0 2 2 2 1 Guanylyl transferase CofC like NTP_transferase PF00483.23 gi|116754325|ref|YP_843443.1| - 0.0054 16.3 0.0 0.0069 16.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|116754325|ref|YP_843443.1| - 0.01 15.6 0.0 0.045 13.5 0.0 1.8 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF2064 PF09837.9 gi|116754325|ref|YP_843443.1| - 0.041 13.7 0.0 0.062 13.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) DUF2031 PF09592.10 gi|116754326|ref|YP_843444.1| - 0.018 14.6 0.0 0.02 14.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2031) Metallophos PF00149.28 gi|116754328|ref|YP_843446.1| - 3.3e-09 37.6 0.0 4.2e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|116754328|ref|YP_843446.1| - 2.3e-06 27.9 0.0 3.4e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Epimerase_2 PF02350.19 gi|116754328|ref|YP_843446.1| - 0.096 11.5 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Beta_helix PF13229.6 gi|116754329|ref|YP_843447.1| - 3.9e-53 179.5 133.0 8.4e-18 64.7 31.9 3.2 1 1 3 4 4 4 4 Right handed beta helix region NosD PF05048.13 gi|116754329|ref|YP_843447.1| - 5.5e-34 117.5 55.8 3e-22 79.1 27.9 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) RdRP_3 PF00998.23 gi|116754329|ref|YP_843447.1| - 0.24 10.0 2.0 0.35 9.5 2.0 1.2 1 0 0 1 1 1 0 Viral RNA dependent RNA polymerase DDE_Tnp_1_5 PF13737.6 gi|116754330|ref|YP_843448.1| - 8.2e-33 113.1 0.0 3.2e-31 107.9 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|116754330|ref|YP_843448.1| - 9e-21 74.5 0.1 1.6e-20 73.7 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain Pentapeptide PF00805.22 gi|116754331|ref|YP_843449.1| - 4.6e-106 345.7 83.3 4.3e-13 48.6 3.4 10.2 3 1 12 15 15 15 14 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|116754331|ref|YP_843449.1| - 6.9e-46 154.3 0.0 1.7e-09 37.7 0.0 5.6 1 1 5 6 6 6 6 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|116754331|ref|YP_843449.1| - 2.9e-32 110.6 4.3 7.6e-06 26.0 0.3 8.3 2 2 5 7 7 7 6 Pentapeptide repeats (9 copies) CfAFP PF05264.11 gi|116754331|ref|YP_843449.1| - 4.1e-05 23.6 0.0 19 5.2 0.0 4.5 1 1 5 6 6 6 1 Choristoneura fumiferana antifreeze protein (CfAFP) DNA_ligase_OB PF03120.16 gi|116754331|ref|YP_843449.1| - 0.0024 17.8 0.3 6.8 6.7 0.0 5.2 2 2 3 5 5 5 1 NAD-dependent DNA ligase OB-fold domain Methyltransf_11 PF08241.12 gi|116754331|ref|YP_843449.1| - 0.0079 16.8 0.4 4.2 8.1 0.0 4.0 2 1 3 5 5 5 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|116754331|ref|YP_843449.1| - 0.1 12.6 0.0 8.3 6.4 0.0 2.7 2 0 0 2 2 2 0 Zinc-binding dehydrogenase TFIIS_C PF01096.18 gi|116754333|ref|YP_843451.1| - 2.8e-18 65.5 8.0 2.9e-18 65.4 3.4 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|116754333|ref|YP_843451.1| - 6.9e-05 22.7 4.4 0.00037 20.4 0.8 2.3 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|116754333|ref|YP_843451.1| - 0.00013 21.4 3.6 0.0018 17.8 0.8 2.7 2 1 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|116754333|ref|YP_843451.1| - 0.002 18.0 8.1 0.089 12.7 0.7 3.1 3 0 0 3 3 3 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|116754333|ref|YP_843451.1| - 0.0029 17.5 0.5 0.055 13.4 0.0 2.4 2 1 0 2 2 2 1 PhnA Zinc-Ribbon Nudix_N_2 PF14803.6 gi|116754333|ref|YP_843451.1| - 0.0059 16.5 3.6 0.19 11.7 0.6 2.9 2 1 0 2 2 2 1 Nudix N-terminal DZR PF12773.7 gi|116754333|ref|YP_843451.1| - 0.006 16.6 3.8 0.25 11.4 3.8 2.3 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|116754333|ref|YP_843451.1| - 0.0085 15.8 10.8 2.5 7.9 0.3 3.2 3 0 0 3 3 3 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|116754333|ref|YP_843451.1| - 0.0087 15.4 6.6 1.1 8.7 0.3 3.2 3 0 0 3 3 3 1 zinc-ribbon domain HypA PF01155.19 gi|116754333|ref|YP_843451.1| - 0.0091 16.0 1.8 0.26 11.3 0.1 2.1 1 1 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3797 PF12677.7 gi|116754333|ref|YP_843451.1| - 0.0098 15.8 1.8 0.18 11.7 0.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF3797) DUF35_N PF12172.8 gi|116754333|ref|YP_843451.1| - 0.011 15.6 5.2 6.2 6.8 0.1 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|116754333|ref|YP_843451.1| - 0.017 15.2 7.3 1.2 9.3 0.2 3.2 3 0 0 3 3 3 0 Zinc ribbon domain zf-RING_7 PF02591.15 gi|116754333|ref|YP_843451.1| - 0.024 14.8 3.0 8.3 6.7 0.1 3.1 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-ZPR1 PF03367.13 gi|116754333|ref|YP_843451.1| - 0.029 14.2 0.1 0.13 12.1 0.0 1.9 2 0 0 2 2 2 0 ZPR1 zinc-finger domain Rubredoxin_2 PF18073.1 gi|116754333|ref|YP_843451.1| - 0.045 13.5 10.2 5.4 6.8 0.7 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain YhfH PF14149.6 gi|116754333|ref|YP_843451.1| - 0.05 13.6 5.3 5.1 7.1 0.2 3.3 3 0 0 3 3 3 0 YhfH-like protein OrfB_Zn_ribbon PF07282.11 gi|116754333|ref|YP_843451.1| - 0.054 13.4 6.0 0.04 13.9 1.2 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF3268 PF11672.8 gi|116754333|ref|YP_843451.1| - 0.061 13.6 1.1 0.5 10.7 0.3 2.0 2 0 0 2 2 2 0 zinc-finger-containing domain DNA_RNApol_7kD PF03604.13 gi|116754333|ref|YP_843451.1| - 0.072 12.8 8.8 3 7.6 0.6 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DiS_P_DiS PF06750.13 gi|116754333|ref|YP_843451.1| - 0.13 12.4 3.0 14 5.9 0.1 3.0 2 1 1 3 3 3 0 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_15 PF17032.5 gi|116754333|ref|YP_843451.1| - 0.15 12.9 4.4 4.3 8.1 4.4 2.3 1 1 0 1 1 1 0 zinc-ribbon family zinc_ribbon_10 PF10058.9 gi|116754333|ref|YP_843451.1| - 0.15 11.8 2.7 11 5.8 0.1 3.0 3 0 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-3CxxC_2 PF17180.4 gi|116754333|ref|YP_843451.1| - 0.16 12.7 7.1 2.8 8.7 1.8 2.9 2 1 1 3 3 3 0 Zinc-binding domain Baculo_LEF5_C PF11792.8 gi|116754333|ref|YP_843451.1| - 0.16 11.7 0.2 0.16 11.7 0.2 2.6 3 0 0 3 3 2 0 Baculoviridae late expression factor 5 C-terminal domain Ogr_Delta PF04606.12 gi|116754333|ref|YP_843451.1| - 0.16 11.9 0.5 0.16 11.9 0.5 2.0 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger RNA_POL_M_15KD PF02150.16 gi|116754333|ref|YP_843451.1| - 0.19 11.7 9.1 11 6.0 0.0 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-C2H2_3 PF13878.6 gi|116754333|ref|YP_843451.1| - 0.29 11.0 6.8 13 5.7 0.2 3.1 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO Ribosomal_S27e PF01667.17 gi|116754333|ref|YP_843451.1| - 0.33 10.7 3.7 3.5 7.4 0.1 2.8 3 0 0 3 3 3 0 Ribosomal protein S27 zf-ISL3 PF14690.6 gi|116754333|ref|YP_843451.1| - 0.34 11.6 7.5 2.6 8.8 0.2 3.1 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RRN7 PF11781.8 gi|116754333|ref|YP_843451.1| - 0.34 10.6 7.5 11 5.8 0.3 3.1 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf_UBZ PF18439.1 gi|116754333|ref|YP_843451.1| - 0.39 10.3 7.3 5.6 6.6 0.1 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-3CxxC PF13695.6 gi|116754333|ref|YP_843451.1| - 0.57 10.7 6.4 6.8 7.2 0.8 2.3 2 1 0 2 2 2 0 Zinc-binding domain zf-C2H2 PF00096.26 gi|116754333|ref|YP_843451.1| - 0.66 10.5 6.8 23 5.7 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type DUF983 PF06170.12 gi|116754333|ref|YP_843451.1| - 0.86 10.1 2.0 24 5.4 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF983) zf-TFIIB PF13453.6 gi|116754333|ref|YP_843451.1| - 1.2 8.6 8.4 0.16 11.3 2.8 2.3 2 1 0 2 2 2 0 Transcription factor zinc-finger Desulfoferrod_N PF06397.12 gi|116754333|ref|YP_843451.1| - 1.5 8.5 0.1 1.5 8.5 0.1 3.1 4 0 0 4 4 3 0 Desulfoferrodoxin, N-terminal domain zf-ACC PF17848.1 gi|116754333|ref|YP_843451.1| - 2.4 8.3 14.1 9.2 6.4 1.0 3.3 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Nop10p PF04135.12 gi|116754333|ref|YP_843451.1| - 2.4 8.3 4.6 1.1 9.4 0.2 2.4 3 0 0 3 3 3 0 Nucleolar RNA-binding protein, Nop10p family A2L_zn_ribbon PF08792.10 gi|116754333|ref|YP_843451.1| - 2.4 8.0 7.5 30 4.5 0.2 3.1 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-Mss51 PF13824.6 gi|116754333|ref|YP_843451.1| - 4.2 7.5 6.8 59 3.9 3.7 3.0 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_13 PF09855.9 gi|116754333|ref|YP_843451.1| - 6.1 7.1 6.5 68 3.7 0.5 3.0 2 1 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-C2H2_4 PF13894.6 gi|116754333|ref|YP_843451.1| - 6.4 7.9 7.1 27 6.0 0.4 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger ADK_lid PF05191.14 gi|116754333|ref|YP_843451.1| - 6.5 6.8 8.2 48 4.0 0.3 3.1 3 0 0 3 3 3 0 Adenylate kinase, active site lid zf-C2H2_11 PF16622.5 gi|116754333|ref|YP_843451.1| - 6.5 6.6 6.9 28 4.6 0.1 3.0 3 0 0 3 3 3 0 zinc-finger C2H2-type CpXC PF14353.6 gi|116754333|ref|YP_843451.1| - 7.7 6.6 7.5 26 4.9 2.1 2.8 1 1 0 2 2 2 0 CpXC protein zf-FPG_IleRS PF06827.14 gi|116754333|ref|YP_843451.1| - 8.1 6.4 9.9 13 5.8 0.1 3.2 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS PCNA_C PF02747.15 gi|116754334|ref|YP_843452.1| - 4e-13 49.6 0.0 4.3e-11 43.1 0.0 3.2 2 2 1 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|116754334|ref|YP_843452.1| - 4.6e-12 45.7 0.3 1.8e-11 43.8 0.1 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.13 gi|116754334|ref|YP_843452.1| - 0.00096 18.7 0.0 0.0031 17.0 0.0 1.7 2 0 0 2 2 2 1 Rad9 DNA_primase_lrg PF04104.14 gi|116754335|ref|YP_843453.1| - 1.7e-33 116.2 0.0 6.2e-33 114.3 0.0 1.7 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit EPSP_synthase PF00275.20 gi|116754336|ref|YP_843454.1| - 6.6e-109 364.4 0.0 7.8e-109 364.1 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Leucyl-specific PF14795.6 gi|116754336|ref|YP_843454.1| - 0.0029 17.7 2.6 1.8 8.7 0.1 4.1 4 1 0 4 4 4 1 Leucine-tRNA synthetase-specific domain DUF4621 PF15414.6 gi|116754336|ref|YP_843454.1| - 0.14 11.0 0.1 0.21 10.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4621) DUF11 PF01345.18 gi|116754337|ref|YP_843455.1| - 0.0029 17.9 0.0 21 5.5 0.0 3.5 3 0 0 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.11 gi|116754337|ref|YP_843455.1| - 0.0033 17.7 0.0 1.2 9.4 0.0 2.9 3 0 0 3 3 3 2 CARDB MG2 PF01835.19 gi|116754337|ref|YP_843455.1| - 0.017 15.6 0.0 0.26 11.8 0.0 2.9 3 1 1 4 4 4 0 MG2 domain Flu_NS2 PF00601.19 gi|116754337|ref|YP_843455.1| - 0.1 12.9 0.1 0.23 11.8 0.1 1.6 1 0 0 1 1 1 0 Influenza non-structural protein (NS2) DUF973 PF06157.11 gi|116754338|ref|YP_843456.1| - 0.032 13.3 0.1 0.032 13.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF3522 PF12036.8 gi|116754338|ref|YP_843456.1| - 0.15 12.3 0.7 0.35 11.1 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3522) BatA PF07584.11 gi|116754338|ref|YP_843456.1| - 0.33 11.3 4.1 0.93 9.9 1.5 2.5 2 1 0 2 2 2 0 Aerotolerance regulator N-terminal MerC PF03203.14 gi|116754338|ref|YP_843456.1| - 1.1 9.7 4.6 1.4 9.4 3.3 1.7 2 0 0 2 2 2 0 MerC mercury resistance protein ABC_tran PF00005.27 gi|116754339|ref|YP_843457.1| - 2.1e-32 112.5 0.0 2.8e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116754339|ref|YP_843457.1| - 3.5e-12 46.8 0.8 1.8e-06 28.0 0.0 3.0 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|116754339|ref|YP_843457.1| - 5.4e-05 23.6 0.0 0.0011 19.4 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|116754339|ref|YP_843457.1| - 0.00012 22.4 0.2 0.0012 19.1 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|116754339|ref|YP_843457.1| - 0.00012 22.6 0.0 0.0035 17.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|116754339|ref|YP_843457.1| - 0.00034 20.1 0.0 0.00057 19.3 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_13 PF13166.6 gi|116754339|ref|YP_843457.1| - 0.00043 19.1 0.0 0.11 11.2 0.0 2.0 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 gi|116754339|ref|YP_843457.1| - 0.00065 19.2 0.0 0.011 15.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|116754339|ref|YP_843457.1| - 0.0014 18.0 0.0 0.05 13.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_33 PF13671.6 gi|116754339|ref|YP_843457.1| - 0.0036 17.5 0.0 0.0064 16.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|116754339|ref|YP_843457.1| - 0.013 15.5 0.1 0.29 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|116754339|ref|YP_843457.1| - 0.02 14.6 0.1 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|116754339|ref|YP_843457.1| - 0.027 14.9 0.9 0.062 13.7 0.9 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|116754339|ref|YP_843457.1| - 0.03 14.0 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|116754339|ref|YP_843457.1| - 0.045 14.0 0.0 0.31 11.3 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|116754339|ref|YP_843457.1| - 0.06 13.8 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|116754339|ref|YP_843457.1| - 0.064 12.9 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|116754339|ref|YP_843457.1| - 0.082 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 gi|116754339|ref|YP_843457.1| - 0.084 12.6 0.1 0.88 9.3 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|116754339|ref|YP_843457.1| - 0.089 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 gi|116754339|ref|YP_843457.1| - 0.12 12.0 0.1 6.5 6.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_28 PF13521.6 gi|116754339|ref|YP_843457.1| - 0.13 12.5 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|116754339|ref|YP_843457.1| - 0.15 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Cytidylate_kin PF02224.18 gi|116754339|ref|YP_843457.1| - 0.21 11.3 0.1 0.34 10.6 0.1 1.3 1 0 0 1 1 1 0 Cytidylate kinase G-alpha PF00503.20 gi|116754339|ref|YP_843457.1| - 0.22 10.6 0.0 0.23 10.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit ABC_tran PF00005.27 gi|116754340|ref|YP_843458.1| - 1.3e-20 74.3 0.0 1.7e-20 73.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|116754340|ref|YP_843458.1| - 3e-16 59.7 0.5 6.7e-16 58.6 0.5 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|116754340|ref|YP_843458.1| - 0.00013 21.5 0.1 0.0005 19.6 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|116754340|ref|YP_843458.1| - 0.00014 21.8 0.4 0.0091 15.8 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|116754340|ref|YP_843458.1| - 0.00037 20.8 0.0 0.0012 19.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|116754340|ref|YP_843458.1| - 0.0016 18.8 0.0 0.0021 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|116754340|ref|YP_843458.1| - 0.0043 16.6 0.0 0.0066 16.0 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|116754340|ref|YP_843458.1| - 0.0088 15.4 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|116754340|ref|YP_843458.1| - 0.013 15.3 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|116754340|ref|YP_843458.1| - 0.013 14.6 0.0 0.026 13.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF87 PF01935.17 gi|116754340|ref|YP_843458.1| - 0.013 15.6 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Sigma54_activat PF00158.26 gi|116754340|ref|YP_843458.1| - 0.016 14.9 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|116754340|ref|YP_843458.1| - 0.019 14.7 0.0 0.05 13.3 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|116754340|ref|YP_843458.1| - 0.02 15.4 0.0 0.028 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|116754340|ref|YP_843458.1| - 0.022 14.0 0.0 0.028 13.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATP-synt_ab PF00006.25 gi|116754340|ref|YP_843458.1| - 0.025 14.2 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.22 gi|116754340|ref|YP_843458.1| - 0.027 13.7 0.0 0.043 13.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|116754340|ref|YP_843458.1| - 0.041 13.9 0.0 0.082 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|116754340|ref|YP_843458.1| - 0.057 13.3 0.0 0.094 12.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_10 PF12846.7 gi|116754340|ref|YP_843458.1| - 0.086 11.7 0.0 1.3 7.9 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AIG1 PF04548.16 gi|116754340|ref|YP_843458.1| - 0.13 11.6 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 AIG1 family AAA_15 PF13175.6 gi|116754340|ref|YP_843458.1| - 0.15 11.7 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|116754340|ref|YP_843458.1| - 0.16 11.9 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain YqaH PF17448.2 gi|116754340|ref|YP_843458.1| - 0.19 12.1 0.1 2.9 8.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized YqaH-like RNA_helicase PF00910.22 gi|116754340|ref|YP_843458.1| - 0.19 12.2 0.0 0.32 11.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 gi|116754341|ref|YP_843459.1| - 9.4e-23 80.9 14.2 9.4e-23 80.9 14.2 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|116754341|ref|YP_843459.1| - 4e-05 23.5 2.1 5.3e-05 23.1 0.1 2.2 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|116754342|ref|YP_843460.1| - 7.8e-37 126.8 14.3 1.3e-36 126.0 14.3 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component GlpM PF06942.12 gi|116754342|ref|YP_843460.1| - 0.2 12.1 4.8 0.65 10.4 0.1 3.0 2 1 0 3 3 3 0 GlpM protein Methyltransf_25 PF13649.6 gi|116754343|ref|YP_843461.1| - 8e-09 36.1 0.0 1.5e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116754343|ref|YP_843461.1| - 2e-05 25.1 0.0 3.3e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|116754343|ref|YP_843461.1| - 4.9e-05 24.0 0.0 0.00012 22.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|116754343|ref|YP_843461.1| - 0.0002 21.2 0.0 0.00031 20.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|116754343|ref|YP_843461.1| - 0.00058 19.7 0.0 0.001 19.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|116754343|ref|YP_843461.1| - 0.00084 19.1 0.0 0.0019 18.0 0.0 1.5 2 0 0 2 2 2 1 Met-10+ like-protein FtsJ PF01728.19 gi|116754343|ref|YP_843461.1| - 0.0056 16.8 0.0 0.0074 16.4 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase MetW PF07021.12 gi|116754343|ref|YP_843461.1| - 0.028 14.0 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|116754343|ref|YP_843461.1| - 0.036 14.0 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.15 gi|116754343|ref|YP_843461.1| - 0.055 12.8 0.0 0.078 12.3 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G PrmA PF06325.13 gi|116754343|ref|YP_843461.1| - 0.061 12.7 0.0 0.089 12.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|116754343|ref|YP_843461.1| - 0.063 12.9 0.0 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical protein 95 RrnaAD PF00398.20 gi|116754343|ref|YP_843461.1| - 0.064 12.3 0.0 0.089 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 gi|116754343|ref|YP_843461.1| - 0.12 11.7 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|116754343|ref|YP_843461.1| - 0.18 11.5 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SBP_bac_5 PF00496.22 gi|116754344|ref|YP_843462.1| - 1.2e-73 248.3 3.7 1.7e-73 247.8 3.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Myco_arth_vir_N PF09610.10 gi|116754344|ref|YP_843462.1| - 0.4 10.8 1.3 0.84 9.8 1.3 1.5 1 0 0 1 1 1 0 Mycoplasma virulence signal region (Myco_arth_vir_N) DUF4277 PF14104.6 gi|116754345|ref|YP_843463.1| - 7.4e-44 148.6 0.0 1.7e-43 147.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|116754345|ref|YP_843463.1| - 3.3e-12 46.5 0.4 3.9e-11 43.0 0.4 2.1 1 1 0 1 1 1 1 Transposase DDE domain Peptidase_S9 PF00326.21 gi|116754346|ref|YP_843464.1| - 1.7e-16 60.4 0.0 8.1e-08 32.0 0.0 2.3 2 0 0 2 2 2 2 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|116754346|ref|YP_843464.1| - 6.8e-11 41.9 0.0 2e-07 30.5 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|116754346|ref|YP_843464.1| - 1.2e-08 35.9 0.0 1.5e-08 35.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|116754346|ref|YP_843464.1| - 6.7e-08 32.5 0.0 4e-07 29.9 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.18 gi|116754346|ref|YP_843464.1| - 4.2e-05 23.2 0.0 0.00092 18.8 0.0 2.5 2 1 0 2 2 2 1 Dienelactone hydrolase family BAAT_C PF08840.11 gi|116754346|ref|YP_843464.1| - 4.5e-05 23.5 0.0 0.17 11.8 0.0 2.1 2 0 0 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal AXE1 PF05448.12 gi|116754346|ref|YP_843464.1| - 0.00043 19.1 0.0 0.0024 16.6 0.1 2.2 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.13 gi|116754346|ref|YP_843464.1| - 0.0013 18.7 0.0 0.083 12.7 0.0 2.1 2 0 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|116754346|ref|YP_843464.1| - 0.0034 17.0 0.0 0.024 14.3 0.0 1.9 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_2 PF02230.16 gi|116754346|ref|YP_843464.1| - 0.088 12.6 0.0 0.23 11.2 0.0 1.6 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase FecCD PF01032.18 gi|116754347|ref|YP_843465.1| - 1.9e-90 303.1 33.3 2.2e-90 302.8 33.3 1.0 1 0 0 1 1 1 1 FecCD transport family IspA PF04279.15 gi|116754347|ref|YP_843465.1| - 3.2 7.9 16.1 0.3 11.3 5.8 2.7 3 1 1 4 4 4 0 Intracellular septation protein A Peripla_BP_2 PF01497.18 gi|116754348|ref|YP_843466.1| - 1.2e-46 159.2 0.0 1.4e-46 159.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein APS_kinase PF01583.20 gi|116754349|ref|YP_843467.1| - 2.5e-32 111.9 0.0 3.2e-32 111.6 0.0 1.1 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|116754349|ref|YP_843467.1| - 2.8e-15 56.7 0.0 4.4e-15 56.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|116754349|ref|YP_843467.1| - 8.5e-09 35.2 0.0 1e-08 35.0 0.0 1.0 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|116754349|ref|YP_843467.1| - 2.9e-08 34.3 0.0 3.9e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain CPT PF07931.12 gi|116754349|ref|YP_843467.1| - 3.1e-06 27.1 0.1 1.8e-05 24.7 0.1 2.1 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA PF00004.29 gi|116754349|ref|YP_843467.1| - 5e-05 23.7 1.4 0.014 15.8 0.3 2.2 1 1 1 2 2 2 2 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|116754349|ref|YP_843467.1| - 0.00011 21.5 0.1 0.0022 17.3 0.0 2.5 1 1 2 3 3 3 1 Zeta toxin MeaB PF03308.16 gi|116754349|ref|YP_843467.1| - 0.00023 20.3 0.0 0.00038 19.5 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB 6PF2K PF01591.18 gi|116754349|ref|YP_843467.1| - 0.00029 20.2 0.3 0.0021 17.4 0.3 1.9 1 1 0 1 1 1 1 6-phosphofructo-2-kinase NTPase_1 PF03266.15 gi|116754349|ref|YP_843467.1| - 0.00039 20.4 0.0 0.00067 19.6 0.0 1.5 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.6 gi|116754349|ref|YP_843467.1| - 0.0007 20.0 0.0 0.0011 19.4 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain PRK PF00485.18 gi|116754349|ref|YP_843467.1| - 0.0008 19.2 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.6 gi|116754349|ref|YP_843467.1| - 0.00091 19.7 0.3 0.0059 17.0 0.3 2.0 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|116754349|ref|YP_843467.1| - 0.0094 16.3 0.0 0.028 14.8 0.0 1.8 1 1 0 1 1 1 1 RNA helicase Mg_chelatase PF01078.21 gi|116754349|ref|YP_843467.1| - 0.011 15.2 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 gi|116754349|ref|YP_843467.1| - 0.013 15.3 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|116754349|ref|YP_843467.1| - 0.019 15.2 1.5 0.14 12.4 0.2 2.2 1 1 1 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|116754349|ref|YP_843467.1| - 0.022 15.1 0.1 0.038 14.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|116754349|ref|YP_843467.1| - 0.027 14.5 0.0 0.055 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|116754349|ref|YP_843467.1| - 0.031 14.3 0.2 0.1 12.6 0.1 2.0 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.17 gi|116754349|ref|YP_843467.1| - 0.037 13.7 0.2 0.11 12.2 0.0 1.8 2 1 0 2 2 2 0 Thymidylate kinase SKI PF01202.22 gi|116754349|ref|YP_843467.1| - 0.041 14.0 0.0 5.8 7.0 0.0 2.2 2 0 0 2 2 2 0 Shikimate kinase Viral_helicase1 PF01443.18 gi|116754349|ref|YP_843467.1| - 0.052 13.3 0.0 0.075 12.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SRP54 PF00448.22 gi|116754349|ref|YP_843467.1| - 0.056 13.1 0.0 0.15 11.7 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|116754349|ref|YP_843467.1| - 0.057 13.1 0.1 0.12 12.1 0.1 1.4 1 1 0 1 1 1 0 AAA domain HTH_23 PF13384.6 gi|116754350|ref|YP_843468.1| - 1.9e-08 33.8 0.0 0.0005 19.8 0.0 3.1 2 1 1 3 3 3 2 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|116754350|ref|YP_843468.1| - 3.1e-08 33.2 0.1 0.0077 15.9 0.1 2.6 2 0 0 2 2 2 2 Sigma-70, region 4 GerE PF00196.19 gi|116754350|ref|YP_843468.1| - 6.8e-08 31.9 0.0 0.0027 17.2 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|116754350|ref|YP_843468.1| - 1.4e-05 24.7 0.0 0.002 17.9 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|116754350|ref|YP_843468.1| - 6.2e-05 22.4 0.1 0.1 12.2 0.0 3.3 3 1 0 3 3 3 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|116754350|ref|YP_843468.1| - 0.0018 18.4 0.0 0.017 15.2 0.0 2.6 3 1 1 4 4 4 1 Helix-turn-helix domain CENP-B_N PF04218.13 gi|116754350|ref|YP_843468.1| - 0.0018 17.8 0.0 0.05 13.2 0.0 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain HTH_3 PF01381.22 gi|116754350|ref|YP_843468.1| - 0.0044 17.1 0.2 0.4 10.8 0.0 3.2 3 0 0 3 3 3 1 Helix-turn-helix HTH_40 PF14493.6 gi|116754350|ref|YP_843468.1| - 0.0045 17.4 0.1 0.17 12.4 0.0 2.8 3 1 0 3 3 3 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|116754350|ref|YP_843468.1| - 0.0064 16.7 0.2 0.15 12.3 0.0 3.0 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain Terminase_5 PF06056.12 gi|116754350|ref|YP_843468.1| - 0.03 14.2 0.0 3.3 7.7 0.0 2.3 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) Sigma70_ECF PF07638.11 gi|116754350|ref|YP_843468.1| - 0.032 14.1 0.1 0.65 9.9 0.0 2.2 1 1 1 2 2 2 0 ECF sigma factor ROS_MUCR PF05443.11 gi|116754350|ref|YP_843468.1| - 0.035 14.1 0.1 0.18 11.9 0.0 2.1 2 1 0 2 2 2 0 ROS/MUCR transcriptional regulator protein GcrA PF07750.11 gi|116754350|ref|YP_843468.1| - 0.054 13.9 0.0 0.49 10.8 0.0 2.2 2 0 0 2 2 2 0 GcrA cell cycle regulator HTH_7 PF02796.15 gi|116754350|ref|YP_843468.1| - 0.062 13.4 0.0 15 5.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|116754350|ref|YP_843468.1| - 0.068 13.2 0.0 1.4 9.0 0.0 2.5 2 1 0 2 2 2 0 Winged helix-turn helix Glyco_hydro_92N PF17678.1 gi|116754350|ref|YP_843468.1| - 0.098 12.6 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 92 N-terminal domain Putative_PNPOx PF01243.20 gi|116754351|ref|YP_843469.1| - 2.8e-14 53.1 0.0 3.5e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.7 gi|116754351|ref|YP_843469.1| - 0.07 13.7 0.0 0.1 13.2 0.0 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase MutS_V PF00488.21 gi|116754352|ref|YP_843470.1| - 1.3e-10 41.7 0.0 3e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 MutS domain V AAA PF00004.29 gi|116754352|ref|YP_843470.1| - 0.014 15.8 0.3 0.062 13.7 0.1 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Exo70 PF03081.15 gi|116754352|ref|YP_843470.1| - 0.081 12.0 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Exo70 exocyst complex subunit DUF885 PF05960.11 gi|116754352|ref|YP_843470.1| - 0.33 10.6 3.2 0.4 10.3 0.1 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF885) FtsZ_C PF12327.8 gi|116754353|ref|YP_843471.1| - 2.4e-12 47.0 0.1 6.8e-12 45.5 0.1 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain DUF3834 PF12916.7 gi|116754353|ref|YP_843471.1| - 0.025 13.8 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) tRNA-synt_1b PF00579.25 gi|116754354|ref|YP_843472.1| - 4.5e-51 173.9 0.0 5.4e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|116754354|ref|YP_843472.1| - 0.0015 17.5 0.0 0.056 12.4 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|116754354|ref|YP_843472.1| - 0.14 10.4 0.0 0.34 9.1 0.0 1.6 2 0 0 2 2 2 0 tRNA synthetases class I (I, L, M and V) Oxidored_q4 PF00507.19 gi|116754356|ref|YP_843474.1| - 1.5e-30 105.3 4.6 1.5e-30 105.3 4.6 2.1 1 1 0 2 2 2 2 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Oxidored_q6 PF01058.22 gi|116754357|ref|YP_843475.1| - 9.9e-21 73.9 0.0 1.9e-20 73.0 0.0 1.5 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|116754358|ref|YP_843476.1| - 1.1e-81 273.9 0.1 3.6e-54 183.7 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|116754358|ref|YP_843476.1| - 1.1e-07 31.2 0.0 2.9e-07 29.8 0.0 1.7 2 0 0 2 2 2 1 Nickel-dependent hydrogenase NADHdh PF00146.21 gi|116754359|ref|YP_843477.1| - 3.4e-107 358.2 18.2 4e-107 358.0 18.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|116754360|ref|YP_843478.1| - 7.7e-14 50.8 18.0 3.7e-07 29.7 4.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116754360|ref|YP_843478.1| - 3.5e-11 43.0 21.0 7.4e-09 35.6 11.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754360|ref|YP_843478.1| - 6.2e-11 42.7 14.6 1.5e-10 41.5 14.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754360|ref|YP_843478.1| - 3.8e-10 39.8 26.4 9.2e-08 32.1 13.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116754360|ref|YP_843478.1| - 2e-08 34.2 25.4 7e-07 29.3 13.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754360|ref|YP_843478.1| - 2.9e-07 30.2 13.2 0.00033 20.6 3.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|116754360|ref|YP_843478.1| - 5.5e-07 30.4 17.9 0.0014 19.5 2.4 3.0 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|116754360|ref|YP_843478.1| - 3.9e-06 26.7 17.9 0.0042 17.1 5.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|116754360|ref|YP_843478.1| - 8.8e-06 26.2 12.5 0.0012 19.3 0.9 2.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|116754360|ref|YP_843478.1| - 0.00023 21.4 16.8 0.0072 16.8 4.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|116754360|ref|YP_843478.1| - 0.00056 20.3 18.0 0.0033 17.8 15.8 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|116754360|ref|YP_843478.1| - 0.0044 17.7 20.8 0.071 13.9 3.1 2.9 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|116754360|ref|YP_843478.1| - 0.03 14.9 2.9 0.03 14.9 2.9 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|116754360|ref|YP_843478.1| - 0.063 14.1 3.0 0.063 14.1 3.0 2.8 1 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|116754360|ref|YP_843478.1| - 0.081 13.9 25.6 1 10.5 9.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|116754360|ref|YP_843478.1| - 0.82 9.9 16.6 1 9.6 2.6 3.0 2 1 0 3 3 3 0 4Fe-4S dicluster domain Oxidored_q3 PF00499.20 gi|116754361|ref|YP_843479.1| - 1.6e-22 79.8 7.3 2.4e-22 79.2 7.3 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.6 gi|116754361|ref|YP_843479.1| - 0.00031 20.8 11.2 0.00042 20.4 11.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF676 PF05057.14 gi|116754361|ref|YP_843479.1| - 0.15 11.6 0.3 0.16 11.5 0.3 1.1 1 0 0 1 1 1 0 Putative serine esterase (DUF676) Oxidored_q3 PF00499.20 gi|116754362|ref|YP_843480.1| - 5.9e-10 39.0 0.7 7.5e-10 38.7 0.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF3309 PF11752.8 gi|116754362|ref|YP_843480.1| - 0.26 11.4 0.3 0.26 11.4 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3309) Oxidored_q2 PF00420.24 gi|116754363|ref|YP_843481.1| - 5.1e-24 83.9 5.1 5.5e-24 83.8 5.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|116754364|ref|YP_843482.1| - 2.8e-78 263.1 18.2 2.8e-78 263.1 18.2 2.3 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|116754364|ref|YP_843482.1| - 2e-17 63.0 2.0 8e-17 61.1 0.5 2.9 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|116754364|ref|YP_843482.1| - 0.00024 20.8 0.1 0.0006 19.5 0.1 1.6 1 1 0 1 1 1 1 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus NADH5_C PF06455.11 gi|116754364|ref|YP_843482.1| - 0.0098 15.5 0.0 0.0098 15.5 0.0 4.9 4 2 0 4 4 4 2 NADH dehydrogenase subunit 5 C-terminus Proton_antipo_M PF00361.20 gi|116754365|ref|YP_843483.1| - 7.7e-74 248.5 25.7 1.3e-73 247.8 25.7 1.4 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|116754365|ref|YP_843483.1| - 0.026 14.6 0.2 0.026 14.6 0.2 4.2 5 0 0 5 5 5 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q5_N PF01059.17 gi|116754365|ref|YP_843483.1| - 0.03 14.4 0.5 0.03 14.4 0.5 3.9 4 2 1 5 5 5 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|116754366|ref|YP_843484.1| - 2.4e-65 220.6 29.1 2.4e-65 220.6 29.1 2.8 2 1 0 2 2 2 1 Proton-conducting membrane transporter DUF3285 PF11688.8 gi|116754366|ref|YP_843484.1| - 0.55 10.2 5.3 11 6.0 0.4 3.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) Fe-S_biosyn PF01521.20 gi|116754367|ref|YP_843485.1| - 2e-05 24.8 0.0 2.7e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Epimerase PF01370.21 gi|116754368|ref|YP_843486.1| - 3.3e-39 134.8 0.0 4.1e-39 134.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|116754368|ref|YP_843486.1| - 1.1e-35 123.6 0.0 5.8e-35 121.3 0.0 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|116754368|ref|YP_843486.1| - 1.1e-09 37.7 0.0 5.7e-09 35.4 0.0 1.9 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|116754368|ref|YP_843486.1| - 2.5e-06 26.9 0.0 0.0056 15.9 0.1 2.5 2 1 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|116754368|ref|YP_843486.1| - 2.4e-05 23.6 0.1 0.15 11.2 0.0 2.0 2 0 0 2 2 2 2 RmlD substrate binding domain KR PF08659.10 gi|116754368|ref|YP_843486.1| - 0.007 16.3 0.0 0.022 14.7 0.0 1.8 2 0 0 2 2 2 1 KR domain adh_short PF00106.25 gi|116754368|ref|YP_843486.1| - 0.0087 15.5 0.1 0.013 14.9 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|116754368|ref|YP_843486.1| - 0.065 12.8 0.0 0.96 9.0 0.0 2.1 2 0 0 2 2 2 0 NmrA-like family Polysacc_synt_2 PF02719.15 gi|116754368|ref|YP_843486.1| - 0.11 11.6 0.2 0.22 10.6 0.1 1.5 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|116754369|ref|YP_843487.1| - 8.4e-70 235.8 0.0 7.6e-66 222.8 0.0 3.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|116754369|ref|YP_843487.1| - 3.8e-52 177.1 0.0 7e-52 176.3 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|116754369|ref|YP_843487.1| - 2.5e-09 36.7 0.0 3.8e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|116754369|ref|YP_843487.1| - 2.7e-09 36.5 0.0 4.8e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|116754369|ref|YP_843487.1| - 5.3e-07 29.1 0.0 1.6e-06 27.5 0.0 1.7 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|116754369|ref|YP_843487.1| - 1.9e-06 27.2 0.0 1.1e-05 24.7 0.0 1.9 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|116754369|ref|YP_843487.1| - 3.6e-05 23.7 0.0 5.9e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|116754369|ref|YP_843487.1| - 0.00037 20.5 0.0 0.00085 19.3 0.0 1.6 1 1 0 1 1 1 1 KR domain adh_short PF00106.25 gi|116754369|ref|YP_843487.1| - 0.00086 18.8 0.0 0.0018 17.8 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|116754369|ref|YP_843487.1| - 0.0047 16.5 0.0 0.0096 15.5 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family Glycos_transf_1 PF00534.20 gi|116754370|ref|YP_843488.1| - 2.7e-30 105.2 0.0 4.4e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|116754370|ref|YP_843488.1| - 1.5e-19 70.7 0.0 3.2e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|116754370|ref|YP_843488.1| - 3e-09 37.1 0.1 5.4e-09 36.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|116754370|ref|YP_843488.1| - 7e-05 23.2 0.6 0.00016 22.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|116754370|ref|YP_843488.1| - 0.00038 19.4 0.0 0.00057 18.8 0.0 1.2 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase ABC2_membrane PF01061.24 gi|116754371|ref|YP_843489.1| - 1.9e-24 86.3 32.5 2.5e-24 85.9 32.5 1.2 1 0 0 1 1 1 1 ABC-2 type transporter Wzt_C PF14524.6 gi|116754372|ref|YP_843490.1| - 9.1e-24 84.1 0.1 1.9e-23 83.1 0.1 1.5 1 0 0 1 1 1 1 Wzt C-terminal domain ABC_tran PF00005.27 gi|116754372|ref|YP_843490.1| - 8.4e-23 81.4 0.1 3.4e-22 79.4 0.0 2.0 2 1 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|116754372|ref|YP_843490.1| - 1.1e-08 35.2 1.3 4.9e-05 23.3 0.6 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|116754372|ref|YP_843490.1| - 0.00012 21.8 0.0 0.00027 20.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|116754372|ref|YP_843490.1| - 0.00015 21.6 0.0 0.00023 21.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|116754372|ref|YP_843490.1| - 0.0015 18.5 0.3 2.1 8.3 0.1 2.5 2 0 0 2 2 2 2 NTPase AAA_16 PF13191.6 gi|116754372|ref|YP_843490.1| - 0.0027 18.1 0.0 0.0039 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|116754372|ref|YP_843490.1| - 0.0036 17.8 1.9 0.0072 16.9 1.7 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|116754372|ref|YP_843490.1| - 0.02 15.3 0.1 0.15 12.5 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|116754372|ref|YP_843490.1| - 0.053 12.5 0.0 0.081 11.9 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|116754372|ref|YP_843490.1| - 0.061 13.2 0.1 0.099 12.6 0.1 1.3 1 0 0 1 1 1 0 NACHT domain SMC_N PF02463.19 gi|116754372|ref|YP_843490.1| - 0.073 12.5 0.2 0.15 11.5 0.0 1.5 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|116754372|ref|YP_843490.1| - 0.086 13.1 0.1 0.21 11.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|116754372|ref|YP_843490.1| - 0.09 13.3 0.1 0.17 12.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|116754372|ref|YP_843490.1| - 0.24 11.1 0.1 1.4 8.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain Methyltransf_11 PF08241.12 gi|116754373|ref|YP_843491.1| - 1.5e-07 32.0 0.0 3.4e-07 30.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|116754373|ref|YP_843491.1| - 9.5e-05 22.3 0.0 0.00022 21.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116754373|ref|YP_843491.1| - 0.00013 22.5 0.0 0.00066 20.3 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|116754373|ref|YP_843491.1| - 0.012 15.4 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF268 PF03269.14 gi|116754373|ref|YP_843491.1| - 0.097 12.5 0.0 0.19 11.6 0.0 1.4 2 0 0 2 2 2 0 Caenorhabditis protein of unknown function, DUF268 Methyltransf_25 PF13649.6 gi|116754374|ref|YP_843492.1| - 1e-20 74.2 0.0 2e-20 73.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116754374|ref|YP_843492.1| - 5.5e-20 71.8 0.0 9.1e-20 71.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|116754374|ref|YP_843492.1| - 7.7e-16 58.4 0.0 1.2e-15 57.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|116754374|ref|YP_843492.1| - 4.2e-12 46.7 0.0 7e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|116754374|ref|YP_843492.1| - 2.2e-11 43.7 0.0 3.2e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|116754374|ref|YP_843492.1| - 4.6e-09 35.9 0.0 7.1e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|116754374|ref|YP_843492.1| - 5.7e-09 35.7 0.0 8.8e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|116754374|ref|YP_843492.1| - 2.1e-08 33.8 0.0 3e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|116754374|ref|YP_843492.1| - 3.7e-06 26.5 0.0 4.9e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|116754374|ref|YP_843492.1| - 4.7e-06 26.1 0.0 7.2e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_2 PF00891.18 gi|116754374|ref|YP_843492.1| - 0.00054 19.3 0.0 0.001 18.4 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_9 PF08003.11 gi|116754374|ref|YP_843492.1| - 0.006 15.6 0.0 0.0085 15.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) NodS PF05401.11 gi|116754374|ref|YP_843492.1| - 0.0068 16.1 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.12 gi|116754374|ref|YP_843492.1| - 0.0069 16.0 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|116754374|ref|YP_843492.1| - 0.022 14.5 0.0 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|116754374|ref|YP_843492.1| - 0.14 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase DUF3419 PF11899.8 gi|116754374|ref|YP_843492.1| - 0.15 11.2 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) NNMT_PNMT_TEMT PF01234.17 gi|116754374|ref|YP_843492.1| - 0.18 11.0 0.0 0.78 8.9 0.0 1.8 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family ET PF01684.16 gi|116754375|ref|YP_843493.1| - 0.11 12.8 1.1 0.23 11.8 1.1 1.5 1 0 0 1 1 1 0 ET module Rhodanese PF00581.20 gi|116754377|ref|YP_843495.1| - 1.8e-23 83.1 0.0 2.6e-10 40.7 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Glycos_transf_1 PF00534.20 gi|116754379|ref|YP_843497.1| - 1.5e-76 255.8 0.0 2.1e-31 108.8 0.0 3.3 3 0 0 3 3 3 3 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|116754379|ref|YP_843497.1| - 6.4e-55 185.2 0.0 4.7e-22 78.9 0.0 3.4 3 0 0 3 3 3 3 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|116754379|ref|YP_843497.1| - 3.6e-20 72.2 0.0 4.9e-09 36.5 0.0 4.3 4 0 0 4 4 4 3 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|116754379|ref|YP_843497.1| - 2.9e-12 46.9 3.8 1.5e-09 38.1 0.1 4.6 4 1 0 4 4 4 1 Glycosyltransferase Family 4 DUF1884 PF08967.10 gi|116754379|ref|YP_843497.1| - 0.13 12.5 0.0 21 5.5 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1884) Methyltransf_23 PF13489.6 gi|116754380|ref|YP_843498.1| - 6.7e-16 58.6 0.0 1.3e-15 57.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116754380|ref|YP_843498.1| - 2.7e-14 53.6 0.0 5.3e-14 52.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116754380|ref|YP_843498.1| - 1.2e-13 51.6 0.0 2.5e-13 50.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|116754380|ref|YP_843498.1| - 1.1e-10 41.4 0.0 2.6e-10 40.2 0.0 1.6 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.6 gi|116754380|ref|YP_843498.1| - 1.9e-07 31.0 0.0 3.7e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|116754380|ref|YP_843498.1| - 1.7e-06 28.7 0.0 3.8e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|116754380|ref|YP_843498.1| - 7e-05 22.3 0.0 0.00015 21.1 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|116754380|ref|YP_843498.1| - 0.0033 16.8 0.0 0.0058 16.0 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|116754380|ref|YP_843498.1| - 0.015 14.8 0.0 0.036 13.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase small domain FtsJ PF01728.19 gi|116754380|ref|YP_843498.1| - 0.098 12.8 0.0 0.23 11.6 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase PMT_2 PF13231.6 gi|116754381|ref|YP_843499.1| - 0.00061 20.0 8.1 0.00061 20.0 8.1 2.9 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_2 PF00535.26 gi|116754382|ref|YP_843500.1| - 3.8e-34 118.0 0.1 4.8e-34 117.6 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|116754382|ref|YP_843500.1| - 6.2e-08 32.8 0.1 8.8e-08 32.3 0.1 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|116754382|ref|YP_843500.1| - 1.1e-06 29.1 0.0 1.7e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|116754382|ref|YP_843500.1| - 1.8e-05 24.3 0.0 3.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|116754382|ref|YP_843500.1| - 5.6e-05 22.7 0.0 9.1e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_43 PF03360.16 gi|116754382|ref|YP_843500.1| - 0.09 12.6 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 43 AP_endonuc_2 PF01261.24 gi|116754383|ref|YP_843501.1| - 2.1e-18 66.5 0.0 2.8e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel GDP_Man_Dehyd PF16363.5 gi|116754384|ref|YP_843502.1| - 1.7e-51 175.6 0.0 2.9e-51 174.8 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|116754384|ref|YP_843502.1| - 1.2e-49 169.0 0.0 1.4e-49 168.7 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|116754384|ref|YP_843502.1| - 1.1e-13 50.8 0.0 2.2e-13 49.9 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|116754384|ref|YP_843502.1| - 2.4e-12 46.5 0.0 3.4e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|116754384|ref|YP_843502.1| - 1.9e-08 33.8 0.0 4e-06 26.2 0.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|116754384|ref|YP_843502.1| - 7e-07 28.7 0.0 0.00081 18.6 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|116754384|ref|YP_843502.1| - 1.2e-06 28.1 0.0 2.3e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|116754384|ref|YP_843502.1| - 0.023 14.6 0.2 0.095 12.6 0.3 2.0 2 1 0 2 2 2 0 KR domain ADH_zinc_N PF00107.26 gi|116754384|ref|YP_843502.1| - 0.056 13.4 0.0 8.8 6.3 0.0 2.4 2 0 0 2 2 2 0 Zinc-binding dehydrogenase TrkA_N PF02254.18 gi|116754384|ref|YP_843502.1| - 0.1 12.9 0.1 18 5.7 0.1 2.4 2 0 0 2 2 2 0 TrkA-N domain ELFV_dehydrog PF00208.21 gi|116754384|ref|YP_843502.1| - 0.17 11.6 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NTP_transferase PF00483.23 gi|116754385|ref|YP_843503.1| - 8.9e-28 97.5 0.0 2.5e-27 96.0 0.0 1.6 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|116754385|ref|YP_843503.1| - 4.1e-11 43.5 0.0 6.3e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|116754385|ref|YP_843503.1| - 0.0022 17.7 0.0 0.0041 16.9 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|116754385|ref|YP_843503.1| - 0.0087 15.9 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Smr PF01713.21 gi|116754385|ref|YP_843503.1| - 0.037 14.4 0.0 0.18 12.2 0.0 2.1 2 0 0 2 2 2 0 Smr domain CTP_transf_3 PF02348.19 gi|116754385|ref|YP_843503.1| - 0.065 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase UDPG_MGDP_dh_N PF03721.14 gi|116754386|ref|YP_843504.1| - 2.8e-53 180.3 0.0 4.8e-53 179.5 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|116754386|ref|YP_843504.1| - 1.6e-38 130.8 0.1 2.9e-38 130.0 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|116754386|ref|YP_843504.1| - 2.2e-28 98.7 0.0 4.6e-28 97.7 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pyr_redox PF00070.27 gi|116754386|ref|YP_843504.1| - 0.00034 21.1 0.3 0.0012 19.3 0.3 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|116754386|ref|YP_843504.1| - 0.0034 16.7 0.1 0.0055 16.0 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|116754386|ref|YP_843504.1| - 0.009 15.9 0.1 0.028 14.3 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DpaA_N PF16924.5 gi|116754386|ref|YP_843504.1| - 0.011 15.8 0.9 0.11 12.6 0.0 2.7 3 0 0 3 3 3 0 Dipicolinate synthase subunit A N-terminal domain NAD_binding_8 PF13450.6 gi|116754386|ref|YP_843504.1| - 0.029 14.6 0.5 0.09 13.0 0.5 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|116754386|ref|YP_843504.1| - 0.049 13.2 0.2 0.098 12.2 0.1 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_2 PF03446.15 gi|116754386|ref|YP_843504.1| - 0.074 13.2 0.0 5.8 7.1 0.0 2.4 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|116754386|ref|YP_843504.1| - 0.076 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|116754386|ref|YP_843504.1| - 0.088 12.1 0.0 0.17 11.1 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|116754386|ref|YP_843504.1| - 0.14 11.2 0.3 0.22 10.6 0.3 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_Gly3P_dh_N PF01210.23 gi|116754386|ref|YP_843504.1| - 0.17 11.9 0.0 0.47 10.4 0.0 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LPG_synthase_TM PF03706.13 gi|116754387|ref|YP_843505.1| - 2.4e-53 181.7 30.0 2.9e-53 181.4 30.0 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region 7tm_7 PF08395.12 gi|116754387|ref|YP_843505.1| - 1.1 8.4 6.2 1.1 8.4 0.8 2.1 2 0 0 2 2 2 0 7tm Chemosensory receptor DPM3 PF08285.11 gi|116754387|ref|YP_843505.1| - 2.7 8.2 9.7 0.096 12.9 1.4 2.3 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF1616 PF07760.11 gi|116754388|ref|YP_843506.1| - 1.1e-18 67.6 12.0 1e-16 61.2 12.0 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) PMT_2 PF13231.6 gi|116754389|ref|YP_843507.1| - 1.9e-07 31.4 15.3 1.9e-07 31.4 15.3 4.0 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase BacA PF02673.18 gi|116754390|ref|YP_843508.1| - 5.9e-20 72.1 5.8 6.8e-20 71.8 5.8 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF2117 PF09890.9 gi|116754391|ref|YP_843509.1| - 2.3e-66 223.3 0.0 3.3e-66 222.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.21 gi|116754391|ref|YP_843509.1| - 0.013 14.7 0.1 0.021 14.0 0.1 1.2 1 0 0 1 1 1 0 ATP-NAD kinase DUF2098 PF09871.9 gi|116754392|ref|YP_843510.1| - 1.3e-26 92.8 0.4 1.4e-26 92.7 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) YdfZ PF14001.6 gi|116754392|ref|YP_843510.1| - 0.075 13.5 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 YdfZ protein AAA_3 PF07726.11 gi|116754393|ref|YP_843511.1| - 1.7e-62 209.1 0.1 2.8e-62 208.3 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|116754393|ref|YP_843511.1| - 1.1e-16 60.4 0.2 2.6e-16 59.2 0.0 1.7 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|116754393|ref|YP_843511.1| - 4e-11 43.1 0.0 6.6e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|116754393|ref|YP_843511.1| - 2.7e-06 27.8 0.0 4.5e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|116754393|ref|YP_843511.1| - 0.00012 21.2 0.0 0.00027 20.1 0.0 1.5 2 0 0 2 2 2 1 MCM P-loop domain RuvB_N PF05496.12 gi|116754393|ref|YP_843511.1| - 0.0069 16.1 0.1 0.045 13.5 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|116754393|ref|YP_843511.1| - 0.012 15.3 0.0 0.056 13.2 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|116754393|ref|YP_843511.1| - 0.029 13.7 0.3 0.27 10.6 0.1 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF58 PF01882.18 gi|116754394|ref|YP_843512.1| - 2.9e-19 69.1 0.3 9.1e-19 67.5 0.0 1.9 2 1 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|116754394|ref|YP_843512.1| - 1.3e-05 25.8 0.1 2.7e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|116754394|ref|YP_843512.1| - 5.9e-05 22.6 0.5 0.00022 20.7 0.5 2.0 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|116754394|ref|YP_843512.1| - 0.017 15.3 0.1 0.026 14.8 0.1 1.3 1 0 0 1 1 1 0 von Willebrand factor type A domain Lambda_CIII PF02061.16 gi|116754394|ref|YP_843512.1| - 0.074 13.1 0.1 0.34 11.0 0.0 2.1 2 0 0 2 2 2 0 Lambda Phage CIII Carb_kinase PF01256.17 gi|116754396|ref|YP_843514.1| - 6.8e-53 179.6 0.1 1e-52 179.1 0.1 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|116754396|ref|YP_843514.1| - 4.3e-37 127.6 0.3 2.1e-36 125.4 0.0 2.0 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|116754396|ref|YP_843514.1| - 3.5e-10 39.7 0.0 6.5e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|116754396|ref|YP_843514.1| - 0.04 13.3 0.0 0.074 12.4 0.0 1.4 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase MoaC PF01967.21 gi|116754397|ref|YP_843515.1| - 1.4e-48 164.4 1.0 1.6e-48 164.3 1.0 1.0 1 0 0 1 1 1 1 MoaC family AIRS PF00586.24 gi|116754398|ref|YP_843516.1| - 7e-23 81.1 0.3 1.5e-22 80.0 0.1 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|116754398|ref|YP_843516.1| - 2.3e-09 37.6 1.2 4e-09 36.8 1.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Zn_Tnp_IS1595 PF12760.7 gi|116754399|ref|YP_843517.1| - 5.1e-05 23.2 1.1 8.2e-05 22.5 1.1 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|116754399|ref|YP_843517.1| - 0.00039 20.7 0.2 0.00048 20.5 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|116754399|ref|YP_843517.1| - 0.00049 19.6 1.3 0.0013 18.2 1.3 1.8 1 1 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|116754399|ref|YP_843517.1| - 0.0037 17.4 0.3 1.5 9.0 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|116754399|ref|YP_843517.1| - 0.0043 16.7 0.7 0.9 9.3 0.0 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain TackOD1 PF18551.1 gi|116754399|ref|YP_843517.1| - 0.0079 15.9 0.1 0.0099 15.6 0.1 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zf-RRN7 PF11781.8 gi|116754399|ref|YP_843517.1| - 0.013 15.2 7.3 0.17 11.6 7.3 2.2 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 OrfB_Zn_ribbon PF07282.11 gi|116754399|ref|YP_843517.1| - 0.023 14.6 0.2 0.032 14.2 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PADR1 PF08063.12 gi|116754399|ref|YP_843517.1| - 0.026 14.3 2.2 0.77 9.6 3.2 2.0 1 1 1 2 2 2 0 PADR1 (NUC008) domain Rubredoxin_2 PF18073.1 gi|116754399|ref|YP_843517.1| - 0.049 13.4 3.6 0.98 9.2 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain TFIIS_C PF01096.18 gi|116754399|ref|YP_843517.1| - 0.087 12.7 1.5 3 7.8 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RecR PF02132.15 gi|116754399|ref|YP_843517.1| - 0.1 12.2 0.9 4.2 7.0 0.1 2.4 2 0 0 2 2 2 0 RecR protein zf-CCHC_2 PF13696.6 gi|116754399|ref|YP_843517.1| - 1.1 9.2 7.2 2.7 7.9 0.0 2.4 2 1 0 2 2 2 0 Zinc knuckle Molydop_binding PF01568.21 gi|116754400|ref|YP_843518.1| - 3.4e-16 59.3 0.0 4.2e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|116754401|ref|YP_843519.1| - 6.1e-14 51.8 0.0 2.3e-13 49.9 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|116754401|ref|YP_843519.1| - 0.067 13.2 1.5 0.16 11.9 1.5 1.7 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Amidohydro_3 PF07969.11 gi|116754402|ref|YP_843520.1| - 1.3e-88 298.6 0.7 1.5e-88 298.4 0.7 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|116754402|ref|YP_843520.1| - 3.9e-06 26.4 0.0 0.022 14.1 0.0 2.6 3 0 0 3 3 3 2 Amidohydrolase family YwhD PF08741.10 gi|116754402|ref|YP_843520.1| - 0.013 15.2 0.0 0.032 13.9 0.0 1.6 1 0 0 1 1 1 0 YwhD family GXGXG PF01493.19 gi|116754403|ref|YP_843521.1| - 2.7e-07 30.4 19.4 0.0014 18.2 2.8 3.2 1 1 2 3 3 3 3 GXGXG motif DUF1297 PF06973.12 gi|116754404|ref|YP_843522.1| - 7.6e-80 266.9 0.0 9.8e-80 266.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|116754404|ref|YP_843522.1| - 2e-44 150.5 0.0 2.9e-44 150.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) bPH_3 PF14470.6 gi|116754405|ref|YP_843523.1| - 0.0025 18.2 0.0 0.0028 18.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.14 gi|116754405|ref|YP_843523.1| - 0.0031 17.7 0.1 0.0046 17.1 0.1 1.4 1 1 0 1 1 1 1 Bacterial PH domain PFOR_II PF17147.4 gi|116754405|ref|YP_843523.1| - 0.13 12.6 0.0 4 7.8 0.0 2.1 2 0 0 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II DUF523 PF04463.12 gi|116754406|ref|YP_843524.1| - 2.2e-09 37.5 0.0 3.2e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF523) Porphobil_deam PF01379.20 gi|116754406|ref|YP_843524.1| - 0.14 11.6 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain ZnuA PF01297.17 gi|116754407|ref|YP_843525.1| - 2.7e-73 246.5 0.0 3.1e-73 246.3 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|116754408|ref|YP_843526.1| - 1.9e-27 96.5 0.0 2.9e-27 95.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116754408|ref|YP_843526.1| - 1.6e-13 51.1 0.6 1.3e-05 25.1 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|116754408|ref|YP_843526.1| - 3e-06 26.8 0.1 0.016 14.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|116754408|ref|YP_843526.1| - 0.00038 20.2 0.0 0.00067 19.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|116754408|ref|YP_843526.1| - 0.0007 19.4 0.0 0.066 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.6 gi|116754408|ref|YP_843526.1| - 0.008 16.4 0.1 0.33 11.2 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|116754408|ref|YP_843526.1| - 0.0081 16.7 0.0 0.013 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|116754408|ref|YP_843526.1| - 0.013 14.5 0.1 0.02 13.9 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_PrkA PF08298.11 gi|116754408|ref|YP_843526.1| - 0.02 13.8 0.0 0.027 13.4 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain AAA_30 PF13604.6 gi|116754408|ref|YP_843526.1| - 0.025 14.3 0.0 0.055 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|116754408|ref|YP_843526.1| - 0.032 13.8 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|116754408|ref|YP_843526.1| - 0.11 12.6 0.1 0.25 11.5 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|116754408|ref|YP_843526.1| - 0.15 12.0 0.2 4 7.4 0.2 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TniB PF05621.11 gi|116754408|ref|YP_843526.1| - 0.16 11.4 0.1 0.55 9.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial TniB protein ABC-3 PF00950.17 gi|116754409|ref|YP_843527.1| - 3.7e-72 242.9 39.3 4.2e-72 242.8 39.3 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|116754409|ref|YP_843527.1| - 5.4e-09 35.5 39.3 1e-08 34.6 39.3 1.5 1 1 0 1 1 1 1 FecCD transport family DsbD PF02683.15 gi|116754411|ref|YP_843529.1| - 3.9e-18 66.1 17.8 5.2e-18 65.7 17.8 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.6 gi|116754411|ref|YP_843529.1| - 1.1e-05 25.4 0.0 1.8e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|116754411|ref|YP_843529.1| - 0.00013 22.1 0.0 0.00022 21.4 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.20 gi|116754411|ref|YP_843529.1| - 0.073 13.1 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin SLATT_5 PF18160.1 gi|116754411|ref|YP_843529.1| - 6.5 6.0 6.8 1.3 8.4 0.6 2.6 3 0 0 3 3 3 0 SMODS and SLOG-associating 2TM effector domain family 5 ArsP_1 PF03773.13 gi|116754412|ref|YP_843530.1| - 1.1e-70 238.1 27.5 1.4e-70 237.8 27.5 1.1 1 0 0 1 1 1 1 Predicted permease HTH_5 PF01022.20 gi|116754413|ref|YP_843531.1| - 7.9e-18 64.1 1.0 2.9e-17 62.2 0.2 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|116754413|ref|YP_843531.1| - 3.9e-10 39.6 0.2 7.6e-10 38.7 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|116754413|ref|YP_843531.1| - 0.0031 17.4 0.0 0.0056 16.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RP-C PF03428.13 gi|116754413|ref|YP_843531.1| - 0.059 13.0 0.1 0.11 12.2 0.1 1.4 1 1 0 1 1 1 0 Replication protein C N-terminal domain MarR PF01047.22 gi|116754413|ref|YP_843531.1| - 0.079 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 MarR family Response_reg PF00072.24 gi|116754414|ref|YP_843532.1| - 2.7e-15 56.5 0.0 5.1e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain CorA PF01544.18 gi|116754414|ref|YP_843532.1| - 0.041 13.2 1.1 0.06 12.7 1.1 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein HalOD1 PF18545.1 gi|116754414|ref|YP_843532.1| - 0.11 12.8 0.1 0.2 11.9 0.1 1.4 1 0 0 1 1 1 0 Halobacterial output domain 1 CheZ PF04344.13 gi|116754414|ref|YP_843532.1| - 0.11 12.4 1.4 0.66 9.9 0.7 2.2 2 0 0 2 2 2 0 Chemotaxis phosphatase, CheZ Pribosyltran PF00156.27 gi|116754416|ref|YP_843534.1| - 9.8e-18 64.2 2.9 1.3e-17 63.8 2.9 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|116754416|ref|YP_843534.1| - 0.00099 18.6 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|116754416|ref|YP_843534.1| - 0.0016 18.0 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase DUF357 PF04010.13 gi|116754417|ref|YP_843535.1| - 8.9e-14 51.3 0.1 1.1e-13 51.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Amidohydro_1 PF01979.20 gi|116754418|ref|YP_843536.1| - 1.4e-25 90.3 0.0 2.1e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|116754418|ref|YP_843536.1| - 1.1e-16 61.4 0.1 2.8e-10 40.3 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Methyltr_RsmB-F PF01189.17 gi|116754418|ref|YP_843536.1| - 0.018 14.7 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Adenosine_kin PF04008.14 gi|116754419|ref|YP_843537.1| - 1.5e-73 245.7 0.0 1.6e-73 245.6 0.0 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DUF2070 PF09843.9 gi|116754420|ref|YP_843538.1| - 0.058 11.7 0.7 0.065 11.5 0.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) RseC_MucC PF04246.12 gi|116754420|ref|YP_843538.1| - 0.14 12.1 1.0 0.19 11.7 1.0 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF4013 PF13197.6 gi|116754421|ref|YP_843539.1| - 0.032 14.1 40.3 0.2 11.5 16.3 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF4013) OrfB_IS605 PF01385.19 gi|116754422|ref|YP_843540.1| - 2.4e-25 89.1 0.5 5.2e-25 88.0 0.5 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|116754422|ref|YP_843540.1| - 7e-24 83.6 1.0 2.6e-23 81.7 0.4 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|116754422|ref|YP_843540.1| - 1.6e-08 33.9 0.1 3.2e-08 32.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HypA PF01155.19 gi|116754422|ref|YP_843540.1| - 0.055 13.5 0.1 0.11 12.5 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|116754422|ref|YP_843540.1| - 0.098 12.6 0.7 0.22 11.4 0.7 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|116754422|ref|YP_843540.1| - 0.14 12.2 2.1 0.28 11.2 2.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|116754422|ref|YP_843540.1| - 0.31 10.6 1.9 2.1 7.9 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|116754422|ref|YP_843540.1| - 0.36 10.3 5.9 8.3 6.0 5.9 2.3 1 1 0 1 1 1 0 zinc-ribbon domain RimK PF08443.11 gi|116754423|ref|YP_843541.1| - 9.5e-34 116.6 0.0 2.3e-33 115.4 0.0 1.5 2 0 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|116754423|ref|YP_843541.1| - 7.2e-16 58.1 0.0 1.2e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|116754423|ref|YP_843541.1| - 9.4e-08 32.3 0.0 6.2e-07 29.6 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|116754423|ref|YP_843541.1| - 1.6e-06 27.6 0.0 0.036 13.3 0.0 3.0 1 1 1 2 2 2 2 YheC/D like ATP-grasp GSP_synth PF03738.14 gi|116754423|ref|YP_843541.1| - 8e-05 22.0 0.0 0.00011 21.5 0.0 1.2 1 0 0 1 1 1 1 Glutathionylspermidine synthase preATP-grasp ATPgrasp_ST PF14397.6 gi|116754423|ref|YP_843541.1| - 0.00024 20.5 0.0 0.061 12.6 0.0 2.1 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp Rimk_N PF18030.1 gi|116754423|ref|YP_843541.1| - 0.022 15.2 0.0 0.036 14.5 0.0 1.4 1 0 0 1 1 1 0 RimK PreATP-grasp domain NIL PF09383.10 gi|116754423|ref|YP_843541.1| - 0.11 12.4 0.1 3.6 7.5 0.0 2.4 2 0 0 2 2 2 0 NIL domain CarS-like PF01864.17 gi|116754424|ref|YP_843542.1| - 0.0032 17.5 0.7 0.0064 16.5 0.3 1.6 1 1 0 1 1 1 1 CDP-archaeol synthase TP_methylase PF00590.20 gi|116754425|ref|YP_843543.1| - 4.8e-17 62.6 0.0 6.7e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Thi4 PF01946.17 gi|116754426|ref|YP_843544.1| - 2.8e-76 255.8 4.1 3.4e-76 255.6 4.1 1.1 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|116754426|ref|YP_843544.1| - 1.7e-06 28.2 0.6 5.4e-06 26.6 0.6 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|116754426|ref|YP_843544.1| - 4.8e-05 22.7 0.1 7e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|116754426|ref|YP_843544.1| - 9.7e-05 21.9 2.5 0.00019 21.0 2.5 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|116754426|ref|YP_843544.1| - 0.00062 18.6 0.8 0.00088 18.1 0.8 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|116754426|ref|YP_843544.1| - 0.00076 18.8 0.0 0.0011 18.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|116754426|ref|YP_843544.1| - 0.00094 18.4 3.3 0.0033 16.6 0.4 2.1 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|116754426|ref|YP_843544.1| - 0.0024 17.0 2.0 0.0056 15.8 0.4 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein K_oxygenase PF13434.6 gi|116754426|ref|YP_843544.1| - 0.0043 16.2 0.0 0.0069 15.6 0.0 1.3 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|116754426|ref|YP_843544.1| - 0.0067 16.4 0.1 0.022 14.8 0.2 1.8 2 0 0 2 2 2 1 FAD-NAD(P)-binding DAO PF01266.24 gi|116754426|ref|YP_843544.1| - 0.077 12.6 3.8 2.6 7.5 0.4 2.2 1 1 1 2 2 2 0 FAD dependent oxidoreductase UPF0146 PF03686.13 gi|116754427|ref|YP_843545.1| - 9.9e-27 93.4 0.0 1.2e-26 93.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Gp23 PF07068.11 gi|116754427|ref|YP_843545.1| - 0.2 10.4 0.0 0.25 10.1 0.0 1.1 1 0 0 1 1 1 0 Major capsid protein Gp23 Radical_SAM PF04055.21 gi|116754428|ref|YP_843546.1| - 1.4e-22 80.9 0.0 2.7e-22 79.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|116754428|ref|YP_843546.1| - 4.1e-10 40.0 0.8 8.2e-10 39.1 0.8 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|116754428|ref|YP_843546.1| - 0.00036 20.8 0.0 0.00056 20.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Furin-like_2 PF15913.5 gi|116754428|ref|YP_843546.1| - 0.016 15.4 0.2 0.47 10.6 0.4 2.3 2 0 0 2 2 2 0 Furin-like repeat, cysteine-rich Fer4_14 PF13394.6 gi|116754428|ref|YP_843546.1| - 0.017 15.2 0.0 0.032 14.4 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|116754429|ref|YP_843547.1| - 2.5e-55 187.7 0.4 5.3e-54 183.4 0.3 2.2 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.15 gi|116754429|ref|YP_843547.1| - 4.6e-52 176.7 0.0 7.3e-52 176.0 0.0 1.3 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Radical_SAM PF04055.21 gi|116754429|ref|YP_843547.1| - 0.081 13.3 0.0 0.22 11.9 0.0 1.8 1 0 0 1 1 1 0 Radical SAM superfamily DUF2073 PF09846.9 gi|116754429|ref|YP_843547.1| - 0.13 12.2 0.0 40 4.2 0.0 3.2 4 0 0 4 4 4 0 Uncharacterized protein conserved in archaea (DUF2073) Porphobil_deam PF01379.20 gi|116754430|ref|YP_843548.1| - 4.6e-58 196.1 0.0 6.2e-58 195.7 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|116754430|ref|YP_843548.1| - 6e-09 36.2 0.1 1.2e-08 35.2 0.1 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.21 gi|116754431|ref|YP_843549.1| - 9.7e-67 225.4 0.0 1.2e-66 225.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|116754431|ref|YP_843549.1| - 0.11 11.7 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II DUF111 PF01969.17 gi|116754432|ref|YP_843550.1| - 5.6e-120 400.8 0.3 6.4e-120 400.7 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 IF2_N PF04760.15 gi|116754432|ref|YP_843550.1| - 0.027 14.3 0.0 0.076 12.8 0.0 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region dUTPase PF00692.19 gi|116754434|ref|YP_843552.1| - 5.2e-11 42.3 0.0 7.7e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|116754434|ref|YP_843552.1| - 0.049 12.4 0.0 0.083 11.7 0.0 1.5 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) ATC_hydrolase PF14196.6 gi|116754436|ref|YP_843554.1| - 3.9e-07 30.9 0.2 5e-07 30.6 0.2 1.1 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase Lactamase_B_2 PF12706.7 gi|116754437|ref|YP_843555.1| - 0.00025 20.6 0.1 0.0023 17.5 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|116754437|ref|YP_843555.1| - 0.0058 16.5 0.1 0.017 15.0 0.1 1.7 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|116754437|ref|YP_843555.1| - 0.022 14.8 2.7 0.12 12.4 2.7 2.0 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|116754437|ref|YP_843555.1| - 0.068 13.1 0.1 0.068 13.1 0.1 1.7 2 0 0 2 2 2 0 Zn-dependent metallo-hydrolase RNA specificity domain Thioredoxin PF00085.20 gi|116754438|ref|YP_843556.1| - 2.3e-24 85.3 0.0 2.7e-24 85.1 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|116754438|ref|YP_843556.1| - 1.1e-08 35.3 0.0 8e-05 22.9 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|116754438|ref|YP_843556.1| - 4.1e-08 33.6 0.0 1.3e-06 28.8 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|116754438|ref|YP_843556.1| - 3.3e-06 27.1 0.0 3.7e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|116754438|ref|YP_843556.1| - 6.5e-05 22.9 0.0 8.6e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.6 gi|116754438|ref|YP_843556.1| - 0.00021 21.0 0.1 0.00026 20.8 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.10 gi|116754438|ref|YP_843556.1| - 0.00032 20.4 0.0 0.0033 17.2 0.0 1.9 2 0 0 2 2 2 1 Redoxin AhpC-TSA PF00578.21 gi|116754438|ref|YP_843556.1| - 0.0019 18.1 0.0 0.0025 17.7 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family KaiB PF07689.12 gi|116754438|ref|YP_843556.1| - 0.0056 16.4 0.0 0.007 16.1 0.0 1.2 1 0 0 1 1 1 1 KaiB domain DUF836 PF05768.14 gi|116754438|ref|YP_843556.1| - 0.006 17.0 0.0 0.0082 16.5 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DSBA PF01323.20 gi|116754438|ref|YP_843556.1| - 0.019 14.8 0.0 0.15 11.8 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain HyaE PF07449.11 gi|116754438|ref|YP_843556.1| - 0.034 14.1 0.0 0.043 13.8 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DUF4174 PF13778.6 gi|116754438|ref|YP_843556.1| - 0.052 14.0 0.1 0.06 13.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4174) Thioredoxin_7 PF13899.6 gi|116754438|ref|YP_843556.1| - 0.066 13.4 0.1 0.13 12.4 0.1 1.7 1 1 0 1 1 1 0 Thioredoxin-like DUF1198 PF06711.11 gi|116754438|ref|YP_843556.1| - 0.15 12.1 0.0 0.18 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1198) Glutaredoxin PF00462.24 gi|116754438|ref|YP_843556.1| - 0.16 12.2 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin_4 PF13462.6 gi|116754438|ref|YP_843556.1| - 0.18 12.0 0.1 0.87 9.7 0.0 1.7 1 1 1 2 2 2 0 Thioredoxin AsnC_trans_reg2 PF17805.1 gi|116754439|ref|YP_843557.1| - 2.7e-20 72.3 0.0 4.6e-20 71.6 0.0 1.4 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|116754439|ref|YP_843557.1| - 7.8e-11 41.6 0.6 1.5e-10 40.7 0.6 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|116754439|ref|YP_843557.1| - 0.00015 21.2 4.6 0.0023 17.5 4.6 2.3 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|116754439|ref|YP_843557.1| - 0.003 17.5 0.2 0.0058 16.6 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain PqqD PF05402.12 gi|116754439|ref|YP_843557.1| - 0.02 15.2 0.0 0.074 13.4 0.0 1.9 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) MarR_2 PF12802.7 gi|116754439|ref|YP_843557.1| - 0.023 14.6 1.4 0.036 14.0 0.5 1.8 2 0 0 2 2 2 0 MarR family Radical_SAM PF04055.21 gi|116754440|ref|YP_843558.1| - 9.5e-21 74.9 0.0 1.4e-20 74.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|116754440|ref|YP_843558.1| - 6.9e-09 36.1 0.9 1.4e-08 35.1 0.9 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|116754440|ref|YP_843558.1| - 4.2e-06 27.1 0.0 7.1e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|116754440|ref|YP_843558.1| - 0.00021 21.4 0.0 0.00039 20.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Semialdhyde_dhC PF02774.18 gi|116754441|ref|YP_843559.1| - 3.1e-39 135.0 0.0 7.4e-39 133.7 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|116754441|ref|YP_843559.1| - 4.3e-32 111.1 0.0 7.3e-32 110.4 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|116754441|ref|YP_843559.1| - 0.013 16.3 0.0 0.022 15.6 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF2193 PF09959.9 gi|116754442|ref|YP_843560.1| - 3.6e-283 939.4 9.7 4e-283 939.3 9.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) DAGK_prokar PF01219.19 gi|116754442|ref|YP_843560.1| - 0.16 11.8 0.9 3.6 7.5 0.3 2.6 2 1 0 2 2 2 0 Prokaryotic diacylglycerol kinase DUF2180 PF09947.9 gi|116754443|ref|YP_843561.1| - 1e-36 124.7 4.2 1.1e-36 124.6 4.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.6 gi|116754443|ref|YP_843561.1| - 0.0016 19.2 2.7 0.018 15.8 0.4 2.1 2 0 0 2 2 2 1 DDE_Tnp_1-like zinc-ribbon Transp_Tc5_C PF04236.15 gi|116754443|ref|YP_843561.1| - 0.01 16.2 1.7 0.017 15.5 1.7 1.4 1 0 0 1 1 1 1 Tc5 transposase C-terminal domain zf-UBP_var PF17807.1 gi|116754443|ref|YP_843561.1| - 0.048 13.4 0.7 0.072 12.9 0.7 1.2 1 0 0 1 1 1 0 Variant UBP zinc finger FYVE PF01363.21 gi|116754443|ref|YP_843561.1| - 0.05 13.8 0.8 0.064 13.4 0.8 1.2 1 0 0 1 1 1 0 FYVE zinc finger MIP PF00230.20 gi|116754444|ref|YP_843562.1| - 8.3e-49 166.3 17.1 9.4e-49 166.2 17.1 1.0 1 0 0 1 1 1 1 Major intrinsic protein Beta-APP PF03494.13 gi|116754444|ref|YP_843562.1| - 1.9 8.4 5.2 0.97 9.3 1.4 2.5 2 0 0 2 2 2 0 Beta-amyloid peptide (beta-APP) BCD PF15461.6 gi|116754445|ref|YP_843563.1| - 0.094 12.2 1.3 0.12 11.8 1.3 1.2 1 0 0 1 1 1 0 Beta-carotene 15,15'-dioxygenase S_4TM PF18159.1 gi|116754445|ref|YP_843563.1| - 0.36 10.1 2.3 1.2 8.4 0.0 2.0 1 1 1 2 2 2 0 SMODS-associating 4TM effector domain UbiA PF01040.18 gi|116754446|ref|YP_843564.1| - 6.8e-42 143.5 16.0 8.3e-42 143.2 16.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family FtsJ PF01728.19 gi|116754447|ref|YP_843565.1| - 4.6e-58 196.2 0.0 5.5e-58 196.0 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|116754447|ref|YP_843565.1| - 2e-09 37.3 0.1 3.7e-09 36.4 0.1 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.6 gi|116754447|ref|YP_843565.1| - 1.2e-05 25.2 0.0 4.1e-05 23.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|116754447|ref|YP_843565.1| - 8.4e-05 22.4 0.0 0.0029 17.4 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116754447|ref|YP_843565.1| - 0.007 17.1 0.3 0.71 10.6 0.1 2.8 1 1 1 2 2 2 2 Methyltransferase domain NNMT_PNMT_TEMT PF01234.17 gi|116754447|ref|YP_843565.1| - 0.05 12.8 0.0 7.3 5.7 0.0 2.2 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family TrkA_N PF02254.18 gi|116754447|ref|YP_843565.1| - 0.1 12.9 0.1 0.27 11.5 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain DUF763 PF05559.11 gi|116754448|ref|YP_843566.1| - 2.9e-129 430.7 0.0 3.4e-129 430.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) UbiA PF01040.18 gi|116754449|ref|YP_843567.1| - 2.4e-40 138.4 21.5 3.1e-40 138.1 21.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family GPI PF06560.11 gi|116754450|ref|YP_843568.1| - 5.6e-41 139.8 0.1 6.7e-41 139.5 0.1 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_1 PF00190.22 gi|116754450|ref|YP_843568.1| - 0.00052 19.6 0.0 0.00082 19.0 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_2 PF07883.11 gi|116754450|ref|YP_843568.1| - 0.00073 19.2 0.0 0.0038 16.9 0.0 2.0 2 0 0 2 2 2 1 Cupin domain ARD PF03079.14 gi|116754450|ref|YP_843568.1| - 0.031 14.5 0.0 0.048 13.9 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family PPC PF04151.15 gi|116754451|ref|YP_843569.1| - 0.013 16.5 0.0 0.034 15.2 0.0 1.7 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain Radical_SAM PF04055.21 gi|116754452|ref|YP_843570.1| - 1.3e-31 110.3 0.1 3e-31 109.0 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|116754452|ref|YP_843570.1| - 5.8e-16 58.6 0.0 1.1e-15 57.7 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|116754452|ref|YP_843570.1| - 1.2e-08 35.1 0.0 2e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|116754452|ref|YP_843570.1| - 2.8e-07 30.9 0.0 5e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2070 PF09843.9 gi|116754453|ref|YP_843571.1| - 0.15 10.4 13.5 0.17 10.1 13.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Phtf-FEM1B_bdg PF12129.8 gi|116754453|ref|YP_843571.1| - 1.3 8.8 4.6 0.93 9.3 3.3 1.3 1 1 0 1 1 1 0 Male germ-cell putative homeodomain transcription factor Pyr_redox_2 PF07992.14 gi|116754454|ref|YP_843572.1| - 1.3e-40 139.5 0.7 1.6e-40 139.2 0.7 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|116754454|ref|YP_843572.1| - 3.9e-22 78.9 0.0 5.8e-17 61.9 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|116754454|ref|YP_843572.1| - 1.1e-07 30.9 1.9 0.0021 16.8 0.3 2.6 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.22 gi|116754454|ref|YP_843572.1| - 2.2e-07 30.3 3.1 0.00038 19.7 0.3 3.1 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|116754454|ref|YP_843572.1| - 5.1e-07 29.1 4.6 2.4e-05 23.6 1.4 2.6 2 1 1 3 3 3 2 FAD binding domain Thi4 PF01946.17 gi|116754454|ref|YP_843572.1| - 2.7e-05 23.5 0.2 4.5e-05 22.8 0.2 1.3 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|116754454|ref|YP_843572.1| - 5.3e-05 22.8 0.0 8.6e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|116754454|ref|YP_843572.1| - 0.00013 21.6 2.5 0.51 9.9 2.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|116754454|ref|YP_843572.1| - 0.00044 19.6 0.1 0.00066 19.0 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|116754454|ref|YP_843572.1| - 0.038 13.0 0.3 0.97 8.4 0.2 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|116754454|ref|YP_843572.1| - 0.052 13.8 0.2 0.052 13.8 0.2 2.5 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|116754454|ref|YP_843572.1| - 0.064 13.8 4.1 0.41 11.2 0.0 2.8 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Radical_SAM PF04055.21 gi|116754455|ref|YP_843573.1| - 7.3e-05 23.2 0.0 0.00022 21.6 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|116754455|ref|YP_843573.1| - 0.0025 17.8 0.0 0.019 15.0 0.0 2.3 2 1 0 2 2 2 1 Radical_SAM C-terminal domain AA_kinase PF00696.28 gi|116754456|ref|YP_843574.1| - 2.7e-28 99.2 3.8 1.7e-26 93.3 3.8 2.0 1 1 0 1 1 1 1 Amino acid kinase family HrcA_DNA-bdg PF03444.15 gi|116754457|ref|YP_843575.1| - 3.7e-35 119.4 0.0 6.9e-35 118.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|116754457|ref|YP_843575.1| - 1.4e-15 57.5 0.9 5.8e-07 29.9 0.1 2.9 2 1 0 2 2 2 2 CBS domain Rrf2 PF02082.20 gi|116754457|ref|YP_843575.1| - 3.8e-08 33.6 0.0 1.1e-07 32.1 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|116754457|ref|YP_843575.1| - 2.9e-06 27.1 0.4 1.2e-05 25.2 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|116754457|ref|YP_843575.1| - 0.00012 22.1 0.1 0.00052 20.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|116754457|ref|YP_843575.1| - 0.0017 18.2 0.1 0.0084 16.0 0.0 2.2 2 0 0 2 2 2 1 MarR family Aconitase_2_N PF06434.13 gi|116754457|ref|YP_843575.1| - 0.058 13.0 0.1 0.077 12.6 0.1 1.3 1 0 0 1 1 1 0 Aconitate hydratase 2 N-terminus TrmB PF01978.19 gi|116754457|ref|YP_843575.1| - 0.058 13.3 0.1 0.45 10.4 0.0 2.5 3 1 1 4 4 4 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|116754457|ref|YP_843575.1| - 0.08 12.6 0.2 1 9.1 0.0 2.7 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_38 PF13936.6 gi|116754457|ref|YP_843575.1| - 0.19 11.5 1.0 0.44 10.3 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|116754458|ref|YP_843576.1| - 3.7e-19 69.7 0.0 5.5e-19 69.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|116754458|ref|YP_843576.1| - 3.2e-06 27.5 0.0 5.2e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|116754458|ref|YP_843576.1| - 9e-06 26.1 0.1 9e-06 26.1 0.1 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|116754458|ref|YP_843576.1| - 0.012 15.7 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain PRA-CH PF01502.18 gi|116754459|ref|YP_843577.1| - 1.1e-34 118.0 0.1 1.4e-34 117.7 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase DUF2162 PF09930.9 gi|116754460|ref|YP_843578.1| - 9.8e-58 195.2 20.8 1.1e-57 195.0 20.8 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) MFS_1_like PF12832.7 gi|116754460|ref|YP_843578.1| - 0.047 12.6 6.3 0.033 13.1 0.8 2.1 2 0 0 2 2 2 0 MFS_1 like family RCR PF12273.8 gi|116754460|ref|YP_843578.1| - 0.26 12.0 0.0 3 8.5 0.0 2.1 1 1 0 1 1 1 0 Chitin synthesis regulation, resistance to Congo red DUF805 PF05656.14 gi|116754460|ref|YP_843578.1| - 3.6 8.0 12.2 0.2 12.1 3.8 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF805) MotA_ExbB PF01618.16 gi|116754461|ref|YP_843579.1| - 4.7e-10 39.3 0.1 6.9e-10 38.8 0.1 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family Myc_target_1 PF15179.6 gi|116754461|ref|YP_843579.1| - 0.36 10.7 1.1 0.48 10.3 0.2 1.6 2 0 0 2 2 2 0 Myc target protein 1 DUF2149 PF09919.9 gi|116754462|ref|YP_843580.1| - 5.9e-33 113.0 0.4 6.8e-33 112.8 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) Lactamase_B_2 PF12706.7 gi|116754463|ref|YP_843581.1| - 6.7e-15 55.1 0.0 9e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|116754463|ref|YP_843581.1| - 5.6e-12 46.1 0.2 4.7e-11 43.1 0.1 2.0 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily SMC_ScpA PF02616.14 gi|116754464|ref|YP_843582.1| - 2.7e-19 70.1 4.1 7.5e-11 42.4 0.1 2.5 1 1 1 2 2 2 2 Segregation and condensation protein ScpA SMC_N PF02463.19 gi|116754465|ref|YP_843583.1| - 2.5e-71 239.6 0.2 3.2e-71 239.3 0.2 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|116754465|ref|YP_843583.1| - 5.6e-30 104.0 0.0 1.2e-29 102.9 0.0 1.6 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|116754465|ref|YP_843583.1| - 1.1e-14 55.4 0.2 1.1e-14 55.4 0.2 5.9 2 2 1 3 3 1 1 AAA domain AAA_15 PF13175.6 gi|116754465|ref|YP_843583.1| - 2.6e-12 47.2 0.1 8.5e-11 42.2 0.0 3.4 2 2 0 2 2 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|116754465|ref|YP_843583.1| - 2.5e-10 40.7 9.7 2.3e-05 24.3 0.0 4.5 5 0 0 5 5 5 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|116754465|ref|YP_843583.1| - 5.1e-07 29.3 0.0 9.6e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATG16 PF08614.11 gi|116754465|ref|YP_843583.1| - 7.8e-06 26.2 96.7 0.0047 17.2 6.8 8.4 2 2 4 7 7 7 3 Autophagy protein 16 (ATG16) APG6_N PF17675.1 gi|116754465|ref|YP_843583.1| - 2.2e-05 25.0 110.0 0.0023 18.4 14.8 8.8 2 2 6 8 8 8 2 Apg6 coiled-coil region AAA_13 PF13166.6 gi|116754465|ref|YP_843583.1| - 0.00097 17.9 48.1 0.0011 17.7 9.6 4.3 2 1 2 4 4 4 3 AAA domain DUF948 PF06103.11 gi|116754465|ref|YP_843583.1| - 0.002 18.4 3.4 27 5.1 0.0 6.6 6 1 1 7 7 7 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|116754465|ref|YP_843583.1| - 0.0032 17.5 45.3 0.095 12.7 2.5 8.3 3 2 7 10 10 10 2 Protein of unknown function (DUF1664) DUF812 PF05667.11 gi|116754465|ref|YP_843583.1| - 0.0037 16.2 15.4 0.0037 16.2 15.4 6.4 2 2 3 5 5 4 1 Protein of unknown function (DUF812) Baculo_PEP_C PF04513.12 gi|116754465|ref|YP_843583.1| - 0.0055 16.8 13.0 6.6 6.8 0.3 6.2 2 2 4 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.9 gi|116754465|ref|YP_843583.1| - 0.0074 16.3 12.4 0.0074 16.3 12.4 7.4 3 2 3 6 6 6 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.11 gi|116754465|ref|YP_843583.1| - 0.019 13.9 88.8 0.14 11.0 6.7 7.2 2 2 6 8 8 8 0 Spc7 kinetochore protein Snapin_Pallidin PF14712.6 gi|116754465|ref|YP_843583.1| - 0.021 15.2 0.0 0.021 15.2 0.0 9.5 5 2 3 10 10 10 0 Snapin/Pallidin DUF3584 PF12128.8 gi|116754465|ref|YP_843583.1| - 0.032 11.8 77.8 0.0022 15.6 11.4 4.3 2 2 2 4 4 4 0 Protein of unknown function (DUF3584) GP41 PF00517.17 gi|116754465|ref|YP_843583.1| - 0.034 14.0 0.1 0.32 10.9 0.0 2.7 2 0 0 2 2 2 0 Retroviral envelope protein AAA_22 PF13401.6 gi|116754465|ref|YP_843583.1| - 0.038 14.3 7.1 0.67 10.2 0.0 4.4 5 0 0 5 5 4 0 AAA domain AAA_19 PF13245.6 gi|116754465|ref|YP_843583.1| - 0.054 13.8 0.0 2.6 8.4 0.0 3.0 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|116754465|ref|YP_843583.1| - 0.072 11.8 0.0 0.072 11.8 0.0 3.4 3 1 0 3 3 3 0 RNA12 protein FtsK_SpoIIIE PF01580.18 gi|116754465|ref|YP_843583.1| - 0.13 11.6 0.0 0.13 11.6 0.0 3.6 3 2 1 4 4 4 0 FtsK/SpoIIIE family GAS PF13851.6 gi|116754465|ref|YP_843583.1| - 0.65 9.3 77.1 0.87 8.9 15.7 8.2 3 2 3 7 7 7 0 Growth-arrest specific micro-tubule binding ABC_tran PF00005.27 gi|116754465|ref|YP_843583.1| - 0.74 10.3 0.0 0.74 10.3 0.0 5.2 4 3 0 4 4 4 0 ABC transporter AAA_16 PF13191.6 gi|116754465|ref|YP_843583.1| - 1.1 9.7 0.0 1.1 9.7 0.0 5.8 3 2 0 4 4 2 0 AAA ATPase domain FliJ PF02050.16 gi|116754465|ref|YP_843583.1| - 1.3 9.3 71.9 0.36 11.1 12.0 7.5 3 2 5 8 8 8 0 Flagellar FliJ protein ADIP PF11559.8 gi|116754465|ref|YP_843583.1| - 1.9 8.6 70.3 0.17 11.9 2.9 7.6 2 2 4 7 7 7 0 Afadin- and alpha -actinin-Binding BLOC1_2 PF10046.9 gi|116754465|ref|YP_843583.1| - 2.1 8.7 45.7 0.34 11.2 0.3 9.4 5 2 2 9 9 8 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Filament PF00038.21 gi|116754465|ref|YP_843583.1| - 2.7 7.5 86.8 5.4 6.5 9.1 6.4 2 2 1 3 3 3 0 Intermediate filament protein Fez1 PF06818.15 gi|116754465|ref|YP_843583.1| - 4 7.8 88.1 0.031 14.7 11.4 6.4 2 2 4 6 6 6 0 Fez1 Flg_hook PF02120.16 gi|116754465|ref|YP_843583.1| - 4.5 7.2 10.5 22 5.0 0.0 5.3 5 0 0 5 5 5 0 Flagellar hook-length control protein FliK Fer4_20 PF14691.6 gi|116754467|ref|YP_843585.1| - 4.8e-42 142.3 1.1 7.6e-42 141.7 1.1 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|116754467|ref|YP_843585.1| - 3.9e-37 128.1 0.3 5.5e-37 127.6 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|116754467|ref|YP_843585.1| - 1.1e-12 48.3 3.6 4e-06 27.3 0.3 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|116754467|ref|YP_843585.1| - 1.4e-09 37.6 1.6 7.6e-05 22.1 0.1 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|116754467|ref|YP_843585.1| - 2.9e-08 33.8 1.4 5e-08 33.1 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|116754467|ref|YP_843585.1| - 4e-07 29.6 0.7 0.00062 19.1 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|116754467|ref|YP_843585.1| - 4.5e-06 27.1 0.1 0.0059 17.0 0.0 2.3 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|116754467|ref|YP_843585.1| - 6.9e-05 22.4 3.1 0.0013 18.1 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase PALP PF00291.25 gi|116754467|ref|YP_843585.1| - 0.0002 20.9 0.0 0.16 11.3 0.0 2.5 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme FAD_binding_2 PF00890.24 gi|116754467|ref|YP_843585.1| - 0.00021 20.5 0.6 0.00021 20.5 0.6 2.4 2 1 0 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|116754467|ref|YP_843585.1| - 0.00044 19.1 0.3 0.00044 19.1 0.3 1.9 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|116754467|ref|YP_843585.1| - 0.00075 18.8 0.8 0.0013 18.0 0.2 1.6 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.6 gi|116754467|ref|YP_843585.1| - 0.00097 18.4 0.0 0.24 10.5 0.0 2.2 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.19 gi|116754467|ref|YP_843585.1| - 0.0012 18.2 0.0 1.9 7.8 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|116754467|ref|YP_843585.1| - 0.0013 18.4 5.5 0.0023 17.6 0.8 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|116754467|ref|YP_843585.1| - 0.0018 17.4 1.3 0.024 13.7 0.1 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A F420_oxidored PF03807.17 gi|116754467|ref|YP_843585.1| - 0.0023 18.5 0.2 0.36 11.4 0.1 3.1 3 0 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|116754467|ref|YP_843585.1| - 0.0024 17.2 1.6 0.0098 15.2 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain Amino_oxidase PF01593.24 gi|116754467|ref|YP_843585.1| - 0.004 16.5 0.1 0.004 16.5 0.1 1.5 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 gi|116754467|ref|YP_843585.1| - 0.0096 15.8 0.4 2.1 8.2 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|116754467|ref|YP_843585.1| - 0.014 14.9 0.1 4.3 6.9 0.0 2.2 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Fer4_7 PF12838.7 gi|116754467|ref|YP_843585.1| - 0.016 15.8 0.3 0.016 15.8 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Oxidored_nitro PF00148.19 gi|116754467|ref|YP_843585.1| - 0.03 13.0 0.1 0.55 8.9 0.0 2.1 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase ELFV_dehydrog PF00208.21 gi|116754467|ref|YP_843585.1| - 0.031 14.0 0.0 2.1 8.0 0.0 2.2 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Shikimate_DH PF01488.20 gi|116754467|ref|YP_843585.1| - 0.033 14.3 0.1 4.4 7.4 0.1 3.0 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|116754467|ref|YP_843585.1| - 0.035 13.7 0.0 0.11 12.1 0.0 1.8 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.6 gi|116754467|ref|YP_843585.1| - 0.079 13.5 0.1 1.7 9.2 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain ApbA PF02558.16 gi|116754467|ref|YP_843585.1| - 0.18 11.4 0.5 0.43 10.2 0.5 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.6 gi|116754467|ref|YP_843585.1| - 0.34 10.9 1.8 0.56 10.2 0.3 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding Fer4_2 PF12797.7 gi|116754467|ref|YP_843585.1| - 3.4 8.0 7.8 0.85 9.9 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain STT3 PF02516.14 gi|116754468|ref|YP_843586.1| - 6.3e-25 88.1 40.2 1.9e-24 86.5 40.2 1.7 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|116754468|ref|YP_843586.1| - 9.3e-20 70.7 0.2 1.6e-19 70.0 0.2 1.4 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|116754468|ref|YP_843586.1| - 9.9e-07 29.1 15.5 9.9e-07 29.1 15.5 3.3 1 1 2 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF63 PF01889.17 gi|116754469|ref|YP_843587.1| - 9.3e-97 324.5 12.3 1e-96 324.3 12.3 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Flavoprotein PF02441.19 gi|116754470|ref|YP_843588.1| - 1.4e-16 60.7 0.0 4.2e-16 59.1 0.0 1.7 2 0 0 2 2 2 1 Flavoprotein Fer4 PF00037.27 gi|116754470|ref|YP_843588.1| - 2.4e-06 27.1 8.5 0.0043 16.8 0.6 3.4 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|116754470|ref|YP_843588.1| - 1.6e-05 24.7 14.7 0.002 18.1 5.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|116754470|ref|YP_843588.1| - 3.2e-05 24.4 6.7 0.0057 17.2 0.1 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116754470|ref|YP_843588.1| - 7.4e-05 22.8 9.6 0.00013 22.0 9.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754470|ref|YP_843588.1| - 0.00012 22.1 5.3 0.025 14.7 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116754470|ref|YP_843588.1| - 0.00041 21.2 5.3 0.059 14.3 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|116754470|ref|YP_843588.1| - 0.00068 20.1 3.6 0.074 13.6 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116754470|ref|YP_843588.1| - 0.0036 17.3 13.0 0.26 11.4 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116754470|ref|YP_843588.1| - 0.0041 17.2 10.1 0.0076 16.3 10.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|116754470|ref|YP_843588.1| - 0.02 15.3 2.1 0.99 9.9 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|116754470|ref|YP_843588.1| - 0.28 11.9 0.1 0.28 11.9 0.1 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain Mut7-C PF01927.16 gi|116754471|ref|YP_843589.1| - 5.5e-23 81.7 7.6 3.9e-16 59.5 0.2 2.0 1 1 1 2 2 2 2 Mut7-C RNAse domain zf-RRN7 PF11781.8 gi|116754471|ref|YP_843589.1| - 0.0035 17.0 0.7 0.0055 16.4 0.7 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-RRPl_C4 PF17026.5 gi|116754471|ref|YP_843589.1| - 0.024 14.8 0.0 0.71 10.0 0.0 2.0 2 0 0 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type ADK_lid PF05191.14 gi|116754471|ref|YP_843589.1| - 0.057 13.4 4.5 0.43 10.6 1.3 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C2H2_3 PF13878.6 gi|116754471|ref|YP_843589.1| - 0.18 11.7 0.4 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Transglut_core PF01841.19 gi|116754472|ref|YP_843590.1| - 1.2e-07 32.2 0.1 1.7e-07 31.7 0.1 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily Peptidase_C93 PF06035.11 gi|116754472|ref|YP_843590.1| - 9.7e-06 25.5 0.0 1.3e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial transglutaminase-like cysteine proteinase BTLCP DUF553 PF04473.12 gi|116754472|ref|YP_843590.1| - 0.00072 19.1 1.1 0.052 13.1 1.1 2.1 1 1 0 1 1 1 1 Transglutaminase-like domain Exonuc_VII_S PF02609.16 gi|116754473|ref|YP_843591.1| - 3.5e-20 71.8 2.7 4.9e-20 71.3 2.7 1.2 1 0 0 1 1 1 1 Exonuclease VII small subunit DUF3461 PF11944.8 gi|116754473|ref|YP_843591.1| - 0.0075 16.4 0.2 0.0084 16.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3461) HetR_C PF18460.1 gi|116754473|ref|YP_843591.1| - 0.084 12.8 0.2 0.17 11.8 0.2 1.5 1 1 0 1 1 1 0 Heterocyst differentiation regulator C-terminal Hood domain HEAT_2 PF13646.6 gi|116754474|ref|YP_843592.1| - 4.9e-22 78.1 2.6 2.6e-11 43.7 0.2 2.1 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.22 gi|116754474|ref|YP_843592.1| - 1.3e-14 53.1 3.1 0.00037 20.5 0.0 4.3 4 0 0 4 4 4 4 HEAT repeat HEAT_PBS PF03130.16 gi|116754474|ref|YP_843592.1| - 1.5e-12 46.9 1.0 2e-06 27.9 0.1 3.5 3 0 0 3 3 3 2 PBS lyase HEAT-like repeat Cnd1 PF12717.7 gi|116754474|ref|YP_843592.1| - 2.7e-08 34.0 1.1 0.00019 21.5 0.1 3.5 1 1 2 3 3 3 3 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|116754474|ref|YP_843592.1| - 9.2e-05 22.9 7.7 0.008 16.7 0.1 4.4 5 0 0 5 5 5 1 HEAT-like repeat Arm PF00514.23 gi|116754474|ref|YP_843592.1| - 0.00014 21.8 0.1 0.13 12.3 0.0 3.2 3 0 0 3 3 3 1 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|116754474|ref|YP_843592.1| - 0.005 15.5 0.3 0.068 11.7 0.1 2.3 1 1 2 3 3 3 3 Adaptin N terminal region Aconitase_B_N PF11791.8 gi|116754474|ref|YP_843592.1| - 0.023 14.7 0.1 0.074 13.1 0.1 1.8 1 1 1 2 2 2 0 Aconitate B N-terminal domain Vac14_Fab1_bd PF12755.7 gi|116754474|ref|YP_843592.1| - 0.041 14.5 0.2 31 5.2 0.0 3.1 1 1 1 3 3 3 0 Vacuolar 14 Fab1-binding region POR PF01558.18 gi|116754475|ref|YP_843593.1| - 1.6e-38 132.6 0.1 1.8e-38 132.3 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|116754476|ref|YP_843594.1| - 7.5e-23 81.0 0.1 1.3e-22 80.2 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|116754476|ref|YP_843594.1| - 4.7e-12 46.2 0.2 3e-11 43.5 0.2 1.9 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|116754476|ref|YP_843594.1| - 4.4e-07 29.5 15.4 1.3e-05 24.8 4.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116754476|ref|YP_843594.1| - 1.4e-05 25.1 11.4 0.00028 21.0 12.3 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754476|ref|YP_843594.1| - 6.1e-05 23.1 12.1 0.0011 19.1 12.9 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754476|ref|YP_843594.1| - 0.00073 19.5 16.0 0.028 14.5 2.3 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|116754476|ref|YP_843594.1| - 0.0011 19.3 13.4 0.071 13.6 3.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|116754476|ref|YP_843594.1| - 0.002 18.1 18.1 0.0027 17.7 3.1 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|116754476|ref|YP_843594.1| - 0.0053 17.3 11.4 0.55 10.8 2.7 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754476|ref|YP_843594.1| - 0.0054 17.3 13.2 0.031 14.9 3.6 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116754476|ref|YP_843594.1| - 0.019 15.1 13.2 0.019 15.1 13.2 2.4 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116754476|ref|YP_843594.1| - 0.023 15.6 11.8 0.027 15.4 3.3 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain DUF1702 PF08012.11 gi|116754476|ref|YP_843594.1| - 0.24 10.3 0.2 0.45 9.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1702) Fer4_13 PF13370.6 gi|116754476|ref|YP_843594.1| - 1.7 9.3 11.0 0.85 10.2 1.9 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|116754476|ref|YP_843594.1| - 3.7 8.1 13.5 1.1 9.7 3.2 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|116754476|ref|YP_843594.1| - 3.8 7.7 8.6 19 5.5 8.8 2.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|116754476|ref|YP_843594.1| - 9.3 7.1 14.0 6.6 7.5 3.4 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain ThiC_Rad_SAM PF01964.18 gi|116754477|ref|YP_843595.1| - 1.5e-175 584.0 0.0 1.7e-175 583.8 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family TPR_2 PF07719.17 gi|116754478|ref|YP_843596.1| - 0.0093 16.0 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|116754478|ref|YP_843596.1| - 0.011 15.5 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|116754478|ref|YP_843596.1| - 0.024 14.8 0.2 0.05 13.8 0.2 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat MIT PF04212.18 gi|116754478|ref|YP_843596.1| - 0.038 14.0 0.0 0.051 13.7 0.0 1.1 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain KaiA PF07688.12 gi|116754478|ref|YP_843596.1| - 0.073 13.2 0.1 0.084 13.0 0.1 1.0 1 0 0 1 1 1 0 KaiA C-terminal domain DUF1664 PF07889.12 gi|116754478|ref|YP_843596.1| - 0.11 12.6 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) tRNA-Thr_ED PF08915.11 gi|116754480|ref|YP_843598.1| - 1.3e-51 174.2 0.2 2.8e-51 173.2 0.0 1.7 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|116754480|ref|YP_843598.1| - 1e-19 70.4 0.7 1e-19 70.4 0.7 2.1 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|116754480|ref|YP_843598.1| - 4.8e-16 59.2 0.2 9.3e-16 58.3 0.2 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) TPK_catalytic PF04263.16 gi|116754480|ref|YP_843598.1| - 0.02 14.9 0.0 0.043 13.9 0.0 1.5 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain S-layer PF07752.11 gi|116754481|ref|YP_843599.1| - 9e-117 388.7 0.0 1.7e-57 194.4 0.2 2.1 2 0 0 2 2 2 2 S-layer protein Fer4_NifH PF00142.18 gi|116754482|ref|YP_843600.1| - 1.3e-90 303.5 1.0 1.5e-90 303.4 1.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|116754482|ref|YP_843600.1| - 1e-09 38.5 0.0 1.6e-09 37.9 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|116754482|ref|YP_843600.1| - 6.7e-09 35.6 0.0 2.1e-08 33.9 0.0 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|116754482|ref|YP_843600.1| - 1.1e-07 31.9 0.3 3e-07 30.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|116754482|ref|YP_843600.1| - 1.2e-06 28.0 0.2 2.3e-06 27.0 0.2 1.4 2 0 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 gi|116754482|ref|YP_843600.1| - 0.0004 19.5 0.4 0.00054 19.0 0.4 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|116754482|ref|YP_843600.1| - 0.00042 19.7 0.2 0.0035 16.7 0.0 2.0 2 0 0 2 2 2 1 ATPase MipZ AAA_24 PF13479.6 gi|116754482|ref|YP_843600.1| - 0.00052 19.8 0.0 0.0008 19.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|116754482|ref|YP_843600.1| - 0.0026 18.1 0.1 0.023 15.1 0.1 2.2 2 1 1 3 3 3 1 AAA ATPase domain ATP_bind_1 PF03029.17 gi|116754482|ref|YP_843600.1| - 0.0043 16.9 0.2 1.9 8.2 0.1 2.2 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|116754482|ref|YP_843600.1| - 0.0078 16.1 0.1 0.13 12.1 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_25 PF13481.6 gi|116754482|ref|YP_843600.1| - 0.012 15.2 0.1 0.032 13.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|116754482|ref|YP_843600.1| - 0.037 13.2 0.0 0.059 12.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|116754482|ref|YP_843600.1| - 0.11 12.2 0.3 0.2 11.4 0.3 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF87 PF01935.17 gi|116754482|ref|YP_843600.1| - 0.2 11.7 0.0 0.29 11.2 0.0 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain DUF815 PF05673.13 gi|116754482|ref|YP_843600.1| - 0.26 10.4 0.0 0.35 10.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) GATase_3 PF07685.14 gi|116754483|ref|YP_843601.1| - 1.2e-39 136.0 0.0 2e-39 135.2 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|116754483|ref|YP_843601.1| - 1.3e-19 70.8 0.1 1.2e-14 54.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain CbiA PF01656.23 gi|116754483|ref|YP_843601.1| - 1.3e-15 57.5 0.0 2.3e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|116754483|ref|YP_843601.1| - 0.033 14.1 0.0 0.09 12.7 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DS PF01916.17 gi|116754484|ref|YP_843602.1| - 1.1e-93 313.7 0.0 1.3e-93 313.5 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase NTP_transferase PF00483.23 gi|116754485|ref|YP_843603.1| - 2.9e-41 141.7 0.0 3.2e-41 141.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|116754485|ref|YP_843603.1| - 7.6e-14 52.4 0.0 8.5e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|116754485|ref|YP_843603.1| - 1.6e-06 28.0 0.0 6.6e-06 26.0 0.0 1.8 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|116754485|ref|YP_843603.1| - 0.039 13.8 0.0 0.05 13.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|116754486|ref|YP_843604.1| - 3.2e-10 39.8 0.0 3.8e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|116754486|ref|YP_843604.1| - 1.1e-07 32.4 0.0 1.6e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|116754486|ref|YP_843604.1| - 0.00011 22.5 0.0 0.00049 20.4 0.0 1.8 1 1 1 2 2 2 1 Glycosyl transferases group 1 Peptidase_M10 PF00413.24 gi|116754487|ref|YP_843605.1| - 0.0028 17.5 0.1 0.0057 16.5 0.0 1.6 2 0 0 2 2 2 1 Matrixin SRR PF07709.11 gi|116754487|ref|YP_843605.1| - 3.5 8.4 3.9 1.5 9.5 1.0 2.1 2 0 0 2 2 2 0 Seven Residue Repeat TolB_like PF15869.5 gi|116754487|ref|YP_843605.1| - 4.7 6.3 8.8 15 4.7 0.3 3.1 1 1 2 3 3 3 0 TolB-like 6-blade propeller-like DDE_Tnp_1_5 PF13737.6 gi|116754488|ref|YP_843606.1| - 8.2e-33 113.1 0.0 3.2e-31 107.9 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|116754488|ref|YP_843606.1| - 9e-21 74.5 0.1 1.6e-20 73.7 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain Peripla_BP_2 PF01497.18 gi|116754489|ref|YP_843607.1| - 6.3e-45 153.6 0.0 7.6e-45 153.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|116754490|ref|YP_843608.1| - 4e-91 305.3 35.1 4.9e-91 305.0 35.1 1.0 1 0 0 1 1 1 1 FecCD transport family MMPL PF03176.15 gi|116754490|ref|YP_843608.1| - 9.4 5.1 13.8 1.2 8.0 8.5 2.1 2 0 0 2 2 2 0 MMPL family Peptidase_S9 PF00326.21 gi|116754491|ref|YP_843609.1| - 1.3e-18 67.2 0.0 9e-09 35.1 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|116754491|ref|YP_843609.1| - 4.7e-11 42.4 0.0 3.2e-07 29.9 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|116754491|ref|YP_843609.1| - 2.4e-08 34.9 0.0 3.2e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|116754491|ref|YP_843609.1| - 7.3e-08 32.2 0.0 3.8e-05 23.4 0.0 3.1 2 1 0 2 2 2 1 Dienelactone hydrolase family BAAT_C PF08840.11 gi|116754491|ref|YP_843609.1| - 9.4e-07 29.0 0.0 1.9e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_1 PF00561.20 gi|116754491|ref|YP_843609.1| - 1.7e-05 24.6 0.0 0.0013 18.5 0.0 2.1 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 gi|116754491|ref|YP_843609.1| - 3.3e-05 23.8 0.1 0.00034 20.5 0.1 2.3 2 1 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|116754491|ref|YP_843609.1| - 0.00011 22.0 0.0 0.00057 19.6 0.0 1.9 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 gi|116754491|ref|YP_843609.1| - 0.00048 18.9 0.0 0.00097 17.9 0.0 1.6 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.16 gi|116754491|ref|YP_843609.1| - 0.019 14.8 0.0 0.045 13.5 0.0 1.5 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase LIP PF03583.14 gi|116754491|ref|YP_843609.1| - 0.027 13.8 0.1 0.11 11.7 0.0 1.9 2 1 1 3 3 3 0 Secretory lipase DUF4277 PF14104.6 gi|116754492|ref|YP_843610.1| - 7.3e-44 148.6 0.0 1.7e-43 147.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|116754492|ref|YP_843610.1| - 3.3e-12 46.5 0.4 3.9e-11 43.0 0.4 2.1 1 1 0 1 1 1 1 Transposase DDE domain BAAT_C PF08840.11 gi|116754493|ref|YP_843611.1| - 2.7e-41 141.8 0.0 3.6e-41 141.4 0.0 1.2 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Bile_Hydr_Trans PF04775.14 gi|116754493|ref|YP_843611.1| - 3.5e-26 91.7 0.0 5.8e-26 91.0 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA thioester hydrolase/BAAT N-terminal region DLH PF01738.18 gi|116754493|ref|YP_843611.1| - 8.9e-06 25.4 0.0 0.00071 19.2 0.0 2.3 2 0 0 2 2 2 1 Dienelactone hydrolase family AXE1 PF05448.12 gi|116754493|ref|YP_843611.1| - 1.7e-05 23.7 0.1 0.00015 20.6 0.0 2.0 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.21 gi|116754493|ref|YP_843611.1| - 0.00026 20.5 0.0 0.017 14.6 0.0 2.7 3 0 0 3 3 3 1 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 gi|116754493|ref|YP_843611.1| - 0.0022 17.9 0.0 0.0034 17.3 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 gi|116754493|ref|YP_843611.1| - 0.0063 16.2 0.0 0.018 14.7 0.0 1.8 2 0 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|116754493|ref|YP_843611.1| - 0.0063 16.1 0.0 0.0095 15.6 0.0 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.20 gi|116754493|ref|YP_843611.1| - 0.019 14.7 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Abhydrolase_7 PF12715.7 gi|116754493|ref|YP_843611.1| - 0.064 12.5 0.0 5.8 6.0 0.0 2.1 2 0 0 2 2 2 0 Abhydrolase family DUF2974 PF11187.8 gi|116754493|ref|YP_843611.1| - 0.11 12.1 0.0 0.4 10.2 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2974) DUF2116 PF09889.9 gi|116754494|ref|YP_843612.1| - 3.6e-23 81.3 0.8 4.5e-23 81.0 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) DZR PF12773.7 gi|116754494|ref|YP_843612.1| - 0.04 14.0 0.3 0.052 13.6 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|116754494|ref|YP_843612.1| - 0.048 13.1 0.6 0.08 12.4 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain AMP-binding PF00501.28 gi|116754497|ref|YP_843615.1| - 5.2e-93 311.9 0.0 6.4e-93 311.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|116754497|ref|YP_843615.1| - 9.7e-28 97.0 3.4 9.7e-28 97.0 3.4 2.4 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|116754497|ref|YP_843615.1| - 1.8e-14 53.4 5.6 1.8e-14 53.4 5.6 2.3 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding PF00501.28 gi|116754498|ref|YP_843616.1| - 5.2e-96 321.8 0.0 6.6e-96 321.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|116754498|ref|YP_843616.1| - 4.6e-29 101.2 3.8 4.6e-29 101.2 3.8 2.5 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|116754498|ref|YP_843616.1| - 3e-14 52.7 4.1 3e-14 52.7 4.1 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding PF00501.28 gi|116754499|ref|YP_843617.1| - 6.4e-93 311.6 0.0 7.8e-93 311.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|116754499|ref|YP_843617.1| - 7.7e-27 94.1 4.0 5.2e-26 91.4 3.0 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|116754499|ref|YP_843617.1| - 5.1e-16 58.3 6.1 5.1e-16 58.3 6.1 2.7 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus AAA_3 PF07726.11 gi|116754500|ref|YP_843618.1| - 4.9e-06 26.4 0.0 1.3e-05 25.0 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|116754500|ref|YP_843618.1| - 0.00021 21.3 0.0 0.00037 20.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Gtr1_RagA PF04670.12 gi|116754500|ref|YP_843618.1| - 0.11 11.9 0.0 0.92 8.8 0.0 2.1 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region TsaE PF02367.17 gi|116754500|ref|YP_843618.1| - 0.2 11.7 0.0 0.37 10.8 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE GXGXG PF01493.19 gi|116754501|ref|YP_843619.1| - 1.2e-07 31.5 14.6 4.5e-07 29.6 14.6 2.1 1 1 0 1 1 1 1 GXGXG motif VWA_2 PF13519.6 gi|116754502|ref|YP_843620.1| - 0.15 12.7 0.0 0.33 11.6 0.0 1.6 1 0 0 1 1 1 0 von Willebrand factor type A domain DS PF01916.17 gi|116754503|ref|YP_843621.1| - 8.8e-101 337.0 0.0 9.9e-101 336.8 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Rnk_N PF14760.6 gi|116754503|ref|YP_843621.1| - 0.031 14.7 0.1 0.077 13.5 0.1 1.6 1 0 0 1 1 1 0 Rnk N-terminus TFX_C PF14601.6 gi|116754504|ref|YP_843622.1| - 2.4e-27 94.7 0.0 3.2e-27 94.3 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|116754504|ref|YP_843622.1| - 7.3e-08 31.8 2.4 1.3e-07 31.0 1.8 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|116754504|ref|YP_843622.1| - 5.6e-05 22.6 0.2 0.0001 21.7 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|116754504|ref|YP_843622.1| - 0.00017 21.2 0.6 0.00057 19.5 0.6 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 KORA PF16509.5 gi|116754504|ref|YP_843622.1| - 0.00085 19.6 0.1 0.0014 18.9 0.1 1.4 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor HTH_31 PF13560.6 gi|116754504|ref|YP_843622.1| - 0.00096 19.5 0.7 0.002 18.4 0.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|116754504|ref|YP_843622.1| - 0.002 17.8 0.3 0.0044 16.8 0.2 1.5 1 1 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.22 gi|116754504|ref|YP_843622.1| - 0.0048 16.9 0.2 0.0079 16.2 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_Crp_2 PF13545.6 gi|116754504|ref|YP_843622.1| - 0.0067 16.4 0.3 0.021 14.8 0.1 2.0 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_37 PF13744.6 gi|116754504|ref|YP_843622.1| - 0.0085 16.0 0.3 0.013 15.4 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|116754504|ref|YP_843622.1| - 0.057 13.5 0.2 0.11 12.7 0.2 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|116754504|ref|YP_843622.1| - 0.066 13.0 0.5 0.23 11.2 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_19 PF12844.7 gi|116754504|ref|YP_843622.1| - 0.1 12.6 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain CAP59_mtransfer PF11735.8 gi|116754504|ref|YP_843622.1| - 0.15 11.7 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 ABC_tran PF00005.27 gi|116754505|ref|YP_843623.1| - 6.5e-32 110.9 0.0 8.8e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116754505|ref|YP_843623.1| - 1.9e-10 41.1 0.1 8.1e-05 22.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|116754505|ref|YP_843623.1| - 0.00037 20.0 0.0 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|116754505|ref|YP_843623.1| - 0.0017 18.6 0.2 0.2 11.9 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|116754505|ref|YP_843623.1| - 0.0049 17.4 0.2 0.0078 16.7 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|116754505|ref|YP_843623.1| - 0.014 15.1 0.1 0.026 14.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|116754505|ref|YP_843623.1| - 0.028 14.8 0.2 0.062 13.7 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|116754505|ref|YP_843623.1| - 0.028 14.3 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|116754505|ref|YP_843623.1| - 0.032 13.8 0.3 0.3 10.6 0.1 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|116754505|ref|YP_843623.1| - 0.05 13.3 0.3 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|116754505|ref|YP_843623.1| - 0.06 13.6 0.1 0.86 9.9 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|116754505|ref|YP_843623.1| - 0.33 10.8 1.4 1.9 8.4 0.1 2.5 2 1 1 3 3 3 0 NACHT domain BPD_transp_1 PF00528.22 gi|116754506|ref|YP_843624.1| - 1.9e-15 57.1 13.8 2.6e-15 56.6 13.8 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component AIRS PF00586.24 gi|116754506|ref|YP_843624.1| - 0.045 14.4 0.5 0.076 13.7 0.5 1.4 1 0 0 1 1 1 0 AIR synthase related protein, N-terminal domain DUF3188 PF11384.8 gi|116754506|ref|YP_843624.1| - 0.22 11.3 5.4 2 8.2 0.4 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) PBP_like_2 PF12849.7 gi|116754507|ref|YP_843625.1| - 1.6e-22 80.5 0.0 1.9e-22 80.2 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|116754507|ref|YP_843625.1| - 9.8e-13 48.4 0.0 1.5e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|116754507|ref|YP_843625.1| - 1.9e-05 24.2 0.0 0.00034 20.0 0.0 2.1 2 0 0 2 2 2 1 LysR substrate binding domain SBP_bac_1 PF01547.25 gi|116754507|ref|YP_843625.1| - 0.0082 16.1 0.0 0.31 10.9 0.0 2.2 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|116754507|ref|YP_843625.1| - 0.013 15.0 0.0 0.043 13.2 0.0 1.7 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|116754507|ref|YP_843625.1| - 0.17 11.6 0.0 0.82 9.4 0.0 1.9 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein NosD PF05048.13 gi|116754509|ref|YP_843627.1| - 3.8e-94 314.5 63.9 5.8e-47 160.0 14.2 4.1 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|116754509|ref|YP_843627.1| - 2.1e-59 199.9 78.4 4.6e-22 78.5 20.5 4.5 2 1 2 4 4 4 4 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|116754509|ref|YP_843627.1| - 2e-08 34.3 41.2 0.0018 18.1 2.7 5.7 3 3 1 5 5 5 4 Pectate lyase superfamily protein Pectinesterase PF01095.19 gi|116754509|ref|YP_843627.1| - 0.061 12.0 0.0 0.16 10.7 0.0 1.8 1 0 0 1 1 1 0 Pectinesterase HATPase_c_4 PF13749.6 gi|116754512|ref|YP_843630.1| - 7e-18 64.6 0.0 1.4e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|116754512|ref|YP_843630.1| - 3.6e-14 53.1 0.0 6.7e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 Putative DNA-binding domain HTH_DeoR PF08220.12 gi|116754512|ref|YP_843630.1| - 0.0023 17.6 0.0 0.0056 16.4 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain PaaX PF07848.12 gi|116754512|ref|YP_843630.1| - 0.029 14.6 0.2 0.12 12.6 0.1 2.0 1 1 1 2 2 2 0 PaaX-like protein NYD-SP28_assoc PF14775.6 gi|116754512|ref|YP_843630.1| - 0.12 12.5 0.2 0.37 10.9 0.1 1.9 2 0 0 2 2 2 0 Sperm tail C-terminal domain N6_Mtase PF02384.16 gi|116754513|ref|YP_843631.1| - 5e-91 305.2 0.0 6.7e-91 304.8 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|116754513|ref|YP_843631.1| - 1.6e-30 106.5 0.0 3.6e-30 105.4 0.0 1.6 1 0 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|116754513|ref|YP_843631.1| - 0.0015 18.2 0.0 0.0033 17.1 0.0 1.6 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 AAA_lid_2 PF17863.1 gi|116754513|ref|YP_843631.1| - 0.039 13.8 0.3 0.33 10.8 0.0 2.5 2 0 0 2 2 2 0 AAA lid domain HsdM_N PF12161.8 gi|116754514|ref|YP_843632.1| - 4.5e-23 82.4 0.2 1.1e-22 81.2 0.1 1.6 2 0 0 2 2 2 1 HsdM N-terminal domain ADP_PFK_GK PF04587.15 gi|116754515|ref|YP_843633.1| - 4.7e-60 203.3 0.0 8.5e-60 202.5 0.0 1.4 1 1 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region PfkB PF00294.24 gi|116754515|ref|YP_843633.1| - 0.00083 18.7 1.6 1.3 8.3 0.0 3.1 3 0 0 3 3 3 3 pfkB family carbohydrate kinase AIRC PF00731.20 gi|116754515|ref|YP_843633.1| - 0.22 11.1 0.8 0.97 9.0 0.1 2.2 2 0 0 2 2 2 0 AIR carboxylase DUF362 PF04015.12 gi|116754516|ref|YP_843634.1| - 8.9e-41 140.4 0.1 1.2e-40 140.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|116754516|ref|YP_843634.1| - 7.3e-11 41.4 15.3 4.2e-07 29.5 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|116754516|ref|YP_843634.1| - 1.4e-08 34.4 13.3 0.00024 21.1 3.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116754516|ref|YP_843634.1| - 8.8e-08 32.2 9.6 1.8e-07 31.2 9.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754516|ref|YP_843634.1| - 1.7e-07 31.7 34.9 1.4e-05 25.6 13.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754516|ref|YP_843634.1| - 2.7e-07 30.3 13.2 0.00035 20.5 2.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116754516|ref|YP_843634.1| - 3.4e-07 30.3 12.6 1e-06 28.8 12.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754516|ref|YP_843634.1| - 4.9e-07 29.8 7.5 0.0034 17.5 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116754516|ref|YP_843634.1| - 2.1e-06 28.6 7.2 0.0014 19.6 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|116754516|ref|YP_843634.1| - 1.4e-05 25.2 14.1 0.0042 17.5 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|116754516|ref|YP_843634.1| - 0.00057 20.7 11.4 0.04 14.8 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|116754516|ref|YP_843634.1| - 0.0011 19.8 18.2 0.085 13.8 5.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|116754516|ref|YP_843634.1| - 0.0019 18.6 9.8 0.12 12.8 3.4 2.4 1 1 2 3 3 2 2 4Fe-4S dicluster domain Lar_N PF09861.9 gi|116754516|ref|YP_843634.1| - 0.0096 15.1 0.4 0.015 14.4 0.4 1.2 1 0 0 1 1 1 1 Lactate racemase N-terminal domain Fer4_18 PF13746.6 gi|116754516|ref|YP_843634.1| - 0.013 15.7 6.2 0.026 14.7 6.2 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|116754516|ref|YP_843634.1| - 0.064 13.8 15.1 0.45 11.1 3.8 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|116754516|ref|YP_843634.1| - 0.85 10.4 11.7 0.33 11.7 1.5 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|116754516|ref|YP_843634.1| - 1.9 9.1 10.1 2.2 8.9 1.3 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Prismane PF03063.20 gi|116754517|ref|YP_843635.1| - 1e-125 420.4 0.0 1.2e-125 420.2 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family zf-tcix PF14952.6 gi|116754517|ref|YP_843635.1| - 3.1 7.5 6.4 6.8 6.4 6.4 1.6 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Nitroreductase PF00881.24 gi|116754518|ref|YP_843636.1| - 6.8e-11 42.5 0.9 0.0042 17.1 0.0 3.6 2 2 1 3 3 3 3 Nitroreductase family TM1586_NiRdase PF14512.6 gi|116754518|ref|YP_843636.1| - 2e-08 34.1 0.2 5.8e-05 22.8 0.0 2.3 2 0 0 2 2 2 2 Putative TM nitroreductase PGM_PMM_II PF02879.16 gi|116754518|ref|YP_843636.1| - 0.0058 17.2 0.0 0.02 15.5 0.0 1.9 1 1 1 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Lyase_1 PF00206.20 gi|116754519|ref|YP_843637.1| - 2.4e-53 181.6 0.1 3.5e-53 181.0 0.1 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|116754519|ref|YP_843637.1| - 8.5e-22 77.5 0.4 8.5e-22 77.5 0.4 2.1 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|116754519|ref|YP_843637.1| - 0.0081 16.2 0.4 0.02 15.0 0.1 1.8 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal FumaraseC_C PF10415.9 gi|116754519|ref|YP_843637.1| - 0.012 16.0 0.0 0.052 14.0 0.0 2.2 1 0 0 1 1 1 0 Fumarase C C-terminus MMR_HSR1 PF01926.23 gi|116754520|ref|YP_843638.1| - 6.1e-16 58.5 0.0 7.8e-16 58.2 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|116754520|ref|YP_843638.1| - 2.9e-13 49.8 0.1 1.5e-05 24.6 0.0 3.0 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|116754520|ref|YP_843638.1| - 1.7e-06 27.6 0.0 0.0069 15.9 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|116754520|ref|YP_843638.1| - 2.1e-05 24.5 0.2 0.16 11.8 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|116754520|ref|YP_843638.1| - 4.4e-05 23.1 0.2 0.00031 20.3 0.2 2.3 1 1 0 1 1 1 1 Ferrous iron transport protein B Roc PF08477.13 gi|116754520|ref|YP_843638.1| - 0.00016 21.9 0.0 0.1 12.8 0.0 2.2 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase AAA PF00004.29 gi|116754520|ref|YP_843638.1| - 0.00036 21.0 0.0 0.00063 20.2 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Septin PF00735.18 gi|116754520|ref|YP_843638.1| - 0.00066 19.1 0.0 0.00093 18.6 0.0 1.2 1 0 0 1 1 1 1 Septin AAA_24 PF13479.6 gi|116754520|ref|YP_843638.1| - 0.00076 19.3 0.0 0.0012 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain Ras PF00071.22 gi|116754520|ref|YP_843638.1| - 0.00077 19.1 0.0 0.23 11.1 0.0 2.6 2 1 0 2 2 2 1 Ras family MMR_HSR1_Xtn PF16897.5 gi|116754520|ref|YP_843638.1| - 0.0013 18.7 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MeaB PF03308.16 gi|116754520|ref|YP_843638.1| - 0.0019 17.2 0.3 1 8.3 0.0 2.7 2 2 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB Parvo_NS1 PF01057.17 gi|116754520|ref|YP_843638.1| - 0.0026 16.9 0.1 0.0042 16.2 0.1 1.2 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 SRPRB PF09439.10 gi|116754520|ref|YP_843638.1| - 0.0056 16.1 0.0 0.53 9.7 0.0 2.3 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_18 PF13238.6 gi|116754520|ref|YP_843638.1| - 0.0082 16.7 0.0 0.031 14.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|116754520|ref|YP_843638.1| - 0.018 14.9 0.0 0.027 14.4 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|116754520|ref|YP_843638.1| - 0.034 14.5 0.0 0.066 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 gi|116754520|ref|YP_843638.1| - 0.035 13.7 0.1 0.072 12.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|116754520|ref|YP_843638.1| - 0.054 14.0 0.0 0.071 13.6 0.0 1.2 1 0 0 1 1 1 0 ABC transporter NB-ARC PF00931.22 gi|116754520|ref|YP_843638.1| - 0.064 12.4 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|116754520|ref|YP_843638.1| - 0.069 13.1 0.0 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 gi|116754520|ref|YP_843638.1| - 0.071 13.4 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|116754520|ref|YP_843638.1| - 0.11 12.8 0.0 0.51 10.6 0.0 2.2 1 1 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|116754520|ref|YP_843638.1| - 0.15 12.1 0.0 19 5.3 0.0 2.3 2 1 0 2 2 2 0 Dynamin family YchF-GTPase_C PF06071.13 gi|116754520|ref|YP_843638.1| - 0.18 12.1 0.0 0.29 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF933) DUF2073 PF09846.9 gi|116754521|ref|YP_843639.1| - 3.5e-45 152.2 0.8 4.2e-45 151.9 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF2072 PF09845.9 gi|116754522|ref|YP_843640.1| - 8.6e-43 145.8 0.0 9.9e-43 145.6 0.0 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein HypA PF01155.19 gi|116754522|ref|YP_843640.1| - 0.0039 17.2 0.2 0.0065 16.5 0.2 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_1 PF14446.6 gi|116754522|ref|YP_843640.1| - 0.022 14.7 1.8 0.037 14.0 1.8 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.10 gi|116754522|ref|YP_843640.1| - 0.032 14.4 0.8 0.072 13.2 0.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|116754522|ref|YP_843640.1| - 0.11 11.9 1.1 0.73 9.2 0.0 2.7 3 0 0 3 3 3 0 Transcription factor zinc-finger 2-Hacid_dh_C PF02826.19 gi|116754525|ref|YP_843643.1| - 2.2e-65 219.4 0.0 4.5e-65 218.3 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|116754525|ref|YP_843643.1| - 3.2e-42 143.4 1.0 7.1e-42 142.3 1.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|116754525|ref|YP_843643.1| - 4.2e-06 27.0 1.8 2.1e-05 24.8 0.1 2.8 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase ACT PF01842.25 gi|116754525|ref|YP_843643.1| - 5.1e-05 23.0 0.5 0.00023 20.9 0.1 2.5 2 0 0 2 2 2 1 ACT domain AdoHcyase_NAD PF00670.21 gi|116754525|ref|YP_843643.1| - 0.00012 22.2 0.5 0.0016 18.5 0.0 2.4 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|116754525|ref|YP_843643.1| - 0.00024 20.7 0.1 0.0025 17.4 0.0 2.4 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain UDPG_MGDP_dh_C PF03720.15 gi|116754525|ref|YP_843643.1| - 0.00062 20.2 0.2 0.039 14.4 0.0 2.9 3 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|116754525|ref|YP_843643.1| - 0.038 14.6 0.3 0.29 11.8 0.0 2.5 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ACT_4 PF13291.6 gi|116754525|ref|YP_843643.1| - 0.11 13.1 2.6 0.67 10.6 0.0 3.2 3 1 0 3 3 3 0 ACT domain PNP_UDP_1 PF01048.20 gi|116754526|ref|YP_843644.1| - 9.6e-38 129.7 0.1 1.2e-37 129.5 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily NAD_binding_10 PF13460.6 gi|116754526|ref|YP_843644.1| - 0.02 14.8 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding DHODB_Fe-S_bind PF10418.9 gi|116754526|ref|YP_843644.1| - 0.058 13.2 1.3 0.095 12.5 0.1 1.9 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B ABC2_membrane PF01061.24 gi|116754528|ref|YP_843646.1| - 2.1e-24 86.1 24.5 2.1e-24 86.1 24.5 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|116754528|ref|YP_843646.1| - 1.1e-16 60.9 24.9 1.1e-16 60.9 24.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|116754528|ref|YP_843646.1| - 7.1e-05 22.2 23.5 7.1e-05 22.2 23.5 2.2 1 1 1 2 2 2 1 ABC-2 family transporter protein AtpR PF12966.7 gi|116754528|ref|YP_843646.1| - 0.0021 18.5 1.4 0.0021 18.5 1.4 2.8 3 1 2 5 5 5 1 N-ATPase, AtpR subunit ABC_tran PF00005.27 gi|116754529|ref|YP_843647.1| - 4.6e-29 101.7 0.0 7.7e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116754529|ref|YP_843647.1| - 9.7e-15 55.2 0.2 2.3e-10 40.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|116754529|ref|YP_843647.1| - 3.6e-08 34.0 0.1 2.9e-07 31.1 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|116754529|ref|YP_843647.1| - 7.5e-05 23.3 0.1 0.00018 22.1 0.1 1.6 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|116754529|ref|YP_843647.1| - 0.00022 20.8 0.1 0.2 11.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|116754529|ref|YP_843647.1| - 0.0045 17.3 0.2 0.065 13.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|116754529|ref|YP_843647.1| - 0.0086 15.8 0.1 0.017 14.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|116754529|ref|YP_843647.1| - 0.016 15.6 0.1 0.61 10.4 0.0 2.3 1 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|116754529|ref|YP_843647.1| - 0.022 15.2 0.3 2.5 8.5 0.0 2.9 1 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|116754529|ref|YP_843647.1| - 0.029 14.0 0.1 0.058 13.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|116754529|ref|YP_843647.1| - 0.14 12.1 0.0 0.35 10.8 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|116754529|ref|YP_843647.1| - 0.16 12.1 0.1 1.7 8.7 0.0 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_13 PF13166.6 gi|116754529|ref|YP_843647.1| - 0.17 10.5 0.2 5.4 5.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF5320 PF17253.2 gi|116754530|ref|YP_843648.1| - 0.011 16.8 1.0 0.014 16.4 1.0 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5320) SAP PF02037.27 gi|116754530|ref|YP_843648.1| - 0.016 14.9 1.1 0.17 11.7 0.0 2.3 1 1 1 2 2 2 0 SAP domain DUF4164 PF13747.6 gi|116754530|ref|YP_843648.1| - 0.025 14.9 0.7 0.028 14.7 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) DUF1192 PF06698.11 gi|116754530|ref|YP_843648.1| - 0.033 14.3 1.3 0.044 13.8 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) DUF5403 PF17395.2 gi|116754530|ref|YP_843648.1| - 0.1 12.9 0.1 0.13 12.5 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5403) LXG PF04740.12 gi|116754530|ref|YP_843648.1| - 0.12 12.1 0.0 0.13 12.0 0.0 1.0 1 0 0 1 1 1 0 LXG domain of WXG superfamily HTH_20 PF12840.7 gi|116754531|ref|YP_843649.1| - 2.2e-11 43.6 0.0 3.3e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|116754531|ref|YP_843649.1| - 2.4e-06 27.3 0.0 7.8e-06 25.7 0.0 1.9 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|116754531|ref|YP_843649.1| - 0.011 15.6 0.1 0.015 15.3 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FUR PF01475.19 gi|116754531|ref|YP_843649.1| - 0.034 14.3 0.0 0.039 14.1 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_12 PF08461.10 gi|116754531|ref|YP_843649.1| - 0.038 13.9 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.6 gi|116754531|ref|YP_843649.1| - 0.14 12.7 0.0 0.2 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF169 PF02596.15 gi|116754532|ref|YP_843650.1| - 1e-48 166.0 0.0 1.3e-48 165.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Pox_F12L PF03337.13 gi|116754532|ref|YP_843650.1| - 0.29 9.2 0.0 0.41 8.7 0.0 1.1 1 0 0 1 1 1 0 Poxvirus F12L protein DEAD PF00270.29 gi|116754533|ref|YP_843651.1| - 9.4e-20 71.1 0.0 1.9e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|116754533|ref|YP_843651.1| - 5.4e-13 49.2 0.0 1.5e-12 47.9 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|116754533|ref|YP_843651.1| - 2.6e-07 30.8 0.0 5.5e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|116754533|ref|YP_843651.1| - 0.22 10.2 0.0 1.1 7.9 0.0 1.9 2 0 0 2 2 2 0 SNF2 family N-terminal domain MarR_2 PF12802.7 gi|116754534|ref|YP_843652.1| - 2.6e-10 40.0 0.0 9.4e-10 38.2 0.0 1.9 2 0 0 2 2 1 1 MarR family HTH_24 PF13412.6 gi|116754534|ref|YP_843652.1| - 4.1e-10 39.1 0.1 2.5e-09 36.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|116754534|ref|YP_843652.1| - 2.4e-06 28.0 0.0 5.7e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|116754534|ref|YP_843652.1| - 2.5e-06 27.4 0.7 1.7e-05 24.7 0.1 2.6 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|116754534|ref|YP_843652.1| - 9.4e-06 25.5 0.0 2.6e-05 24.0 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_11 PF08279.12 gi|116754534|ref|YP_843652.1| - 4e-05 23.5 0.0 8.3e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_13 PF11972.8 gi|116754534|ref|YP_843652.1| - 0.00042 20.3 0.0 0.00098 19.1 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_45 PF14947.6 gi|116754534|ref|YP_843652.1| - 0.00044 20.2 0.0 0.00082 19.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_3 PF01381.22 gi|116754534|ref|YP_843652.1| - 0.00045 20.2 0.0 0.0012 18.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix Mnd1 PF03962.15 gi|116754534|ref|YP_843652.1| - 0.00047 20.4 0.1 0.0029 17.9 0.0 2.2 2 1 1 3 3 2 1 Mnd1 HTH domain HTH_17 PF12728.7 gi|116754534|ref|YP_843652.1| - 0.00052 20.1 0.3 1 9.6 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_IclR PF09339.10 gi|116754534|ref|YP_843652.1| - 0.00061 19.5 0.0 0.0015 18.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|116754534|ref|YP_843652.1| - 0.0013 18.9 0.0 0.0037 17.4 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|116754534|ref|YP_843652.1| - 0.0014 18.4 0.0 0.0033 17.2 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.20 gi|116754534|ref|YP_843652.1| - 0.0015 18.8 0.0 0.0041 17.4 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 gi|116754534|ref|YP_843652.1| - 0.0025 17.4 0.8 0.018 14.7 0.0 2.7 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family Mrr_N PF14338.6 gi|116754534|ref|YP_843652.1| - 0.0049 17.0 0.1 0.03 14.5 0.1 2.1 1 1 0 1 1 1 1 Mrr N-terminal domain TrmB PF01978.19 gi|116754534|ref|YP_843652.1| - 0.0087 15.9 0.0 0.024 14.5 0.0 1.8 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|116754534|ref|YP_843652.1| - 0.021 14.6 0.0 0.033 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_28 PF13518.6 gi|116754534|ref|YP_843652.1| - 0.025 14.7 0.0 0.29 11.3 0.0 2.6 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|116754534|ref|YP_843652.1| - 0.026 14.4 0.0 0.054 13.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HemN_C PF06969.16 gi|116754534|ref|YP_843652.1| - 0.029 14.4 0.1 0.26 11.4 0.0 2.5 3 0 0 3 3 2 0 HemN C-terminal domain HTH_10 PF04967.12 gi|116754534|ref|YP_843652.1| - 0.036 13.9 0.1 0.18 11.7 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain HTH_1 PF00126.27 gi|116754534|ref|YP_843652.1| - 0.04 13.9 0.0 0.088 12.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family YdaS_antitoxin PF15943.5 gi|116754534|ref|YP_843652.1| - 0.041 13.7 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT AbiEi_4 PF13338.6 gi|116754534|ref|YP_843652.1| - 0.055 13.6 0.0 0.28 11.4 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin KORA PF16509.5 gi|116754534|ref|YP_843652.1| - 0.062 13.6 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_Tnp_1 PF01527.20 gi|116754534|ref|YP_843652.1| - 0.065 13.6 0.1 0.15 12.4 0.1 1.7 1 0 0 1 1 1 0 Transposase HxlR PF01638.17 gi|116754534|ref|YP_843652.1| - 0.085 12.7 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix P22_Cro PF14549.6 gi|116754534|ref|YP_843652.1| - 0.12 12.3 0.1 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro SMC_ScpB PF04079.16 gi|116754534|ref|YP_843652.1| - 0.14 11.8 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB DUF4423 PF14394.6 gi|116754534|ref|YP_843652.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) ArsR PF09824.9 gi|116754535|ref|YP_843653.1| - 1.1e-64 216.9 0.0 1.2e-64 216.7 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator SMC_ScpB PF04079.16 gi|116754535|ref|YP_843653.1| - 0.015 14.9 0.1 0.21 11.2 0.0 2.0 1 1 1 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_5 PF01022.20 gi|116754535|ref|YP_843653.1| - 0.044 13.7 0.1 1.7 8.6 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|116754535|ref|YP_843653.1| - 0.051 13.6 0.0 0.17 11.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain COMMD1_N PF17221.3 gi|116754535|ref|YP_843653.1| - 0.095 13.0 0.1 0.16 12.3 0.1 1.3 1 0 0 1 1 1 0 COMMD1 N-terminal domain DUF4224 PF13986.6 gi|116754535|ref|YP_843653.1| - 0.13 12.1 0.4 2.6 8.0 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4224) Epimerase_2 PF02350.19 gi|116754536|ref|YP_843654.1| - 8.3e-113 376.8 0.0 9.8e-113 376.5 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.6 gi|116754536|ref|YP_843654.1| - 0.00055 20.4 0.1 0.0012 19.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|116754536|ref|YP_843654.1| - 0.0015 18.6 0.0 0.0026 17.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Pyr_redox PF00070.27 gi|116754536|ref|YP_843654.1| - 0.057 14.0 0.0 0.16 12.6 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|116754536|ref|YP_843654.1| - 0.089 12.0 0.6 0.73 9.0 0.1 2.1 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_trans_4_2 PF13477.6 gi|116754536|ref|YP_843654.1| - 0.14 12.1 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like Cupredoxin_1 PF13473.6 gi|116754537|ref|YP_843655.1| - 0.011 15.8 0.0 0.026 14.6 0.0 1.7 1 0 0 1 1 1 0 Cupredoxin-like domain Ribosomal_L40e PF01020.17 gi|116754538|ref|YP_843656.1| - 0.00024 20.9 6.6 0.00028 20.7 6.6 1.2 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|116754538|ref|YP_843656.1| - 0.0019 17.8 1.1 0.0028 17.3 1.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|116754538|ref|YP_843656.1| - 0.012 15.3 5.4 0.018 14.7 5.4 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|116754538|ref|YP_843656.1| - 0.013 15.6 0.6 0.014 15.5 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon PcrB PF01884.17 gi|116754539|ref|YP_843657.1| - 3.5e-62 209.8 0.0 4.1e-62 209.6 0.0 1.0 1 0 0 1 1 1 1 PcrB family IMPDH PF00478.25 gi|116754539|ref|YP_843657.1| - 4.5e-06 25.9 0.6 0.00031 19.8 0.1 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 gi|116754539|ref|YP_843657.1| - 5.9e-06 25.9 0.1 2.1e-05 24.1 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|116754539|ref|YP_843657.1| - 0.00074 18.9 2.8 0.34 10.2 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PucR PF07905.11 gi|116754539|ref|YP_843657.1| - 0.0047 17.2 0.0 0.058 13.7 0.0 2.1 2 0 0 2 2 2 1 Purine catabolism regulatory protein-like family HMGL-like PF00682.19 gi|116754539|ref|YP_843657.1| - 0.0099 15.5 0.0 1.1 8.7 0.0 2.1 2 0 0 2 2 2 1 HMGL-like Dus PF01207.17 gi|116754539|ref|YP_843657.1| - 0.014 14.5 0.0 1.5 7.9 0.0 2.1 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) Ribul_P_3_epim PF00834.19 gi|116754539|ref|YP_843657.1| - 0.027 13.9 0.1 0.047 13.1 0.1 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family S-methyl_trans PF02574.16 gi|116754539|ref|YP_843657.1| - 0.054 13.3 0.1 0.097 12.5 0.0 1.5 2 0 0 2 2 2 0 Homocysteine S-methyltransferase DpaA_N PF16924.5 gi|116754539|ref|YP_843657.1| - 0.061 13.4 0.2 0.13 12.4 0.2 1.5 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain PEP_hydrolase PF09370.10 gi|116754539|ref|YP_843657.1| - 0.09 12.0 0.6 0.34 10.1 0.1 1.9 2 0 0 2 2 2 0 Phosphoenolpyruvate hydrolase-like DHO_dh PF01180.21 gi|116754539|ref|YP_843657.1| - 0.19 10.9 0.4 0.3 10.2 0.4 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase LEP503 PF15221.6 gi|116754539|ref|YP_843657.1| - 0.33 11.3 1.2 0.66 10.3 0.1 2.2 2 1 0 2 2 2 0 Lens epithelial cell protein LEP503 Peptidase_M24 PF00557.24 gi|116754540|ref|YP_843658.1| - 2.3e-40 138.5 0.0 3.4e-40 138.0 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF389 PF04087.14 gi|116754541|ref|YP_843659.1| - 1.2e-32 112.9 19.8 1.2e-32 112.9 19.8 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF389) PHO4 PF01384.20 gi|116754541|ref|YP_843659.1| - 3.1 6.8 18.8 0.72 8.8 3.3 2.2 1 1 1 2 2 2 0 Phosphate transporter family Holin_BlyA PF05102.12 gi|116754541|ref|YP_843659.1| - 4.3 7.4 6.1 5.9 6.9 0.2 3.3 3 0 0 3 3 3 0 holin, BlyA family SHMT PF00464.19 gi|116754542|ref|YP_843660.1| - 2.9e-173 576.1 0.0 3.4e-173 575.8 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|116754542|ref|YP_843660.1| - 8.2e-07 28.5 0.0 1.7e-06 27.5 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|116754542|ref|YP_843660.1| - 1.5e-06 27.7 0.1 7.6e-06 25.4 0.1 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|116754542|ref|YP_843660.1| - 9.8e-06 24.8 0.0 1.4e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|116754542|ref|YP_843660.1| - 0.039 12.5 0.0 0.073 11.6 0.0 1.5 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|116754542|ref|YP_843660.1| - 0.073 12.4 0.2 0.14 11.5 0.2 1.5 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Cullin_Nedd8 PF10557.9 gi|116754542|ref|YP_843660.1| - 0.11 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Cullin protein neddylation domain THF_DHG_CYH_C PF02882.19 gi|116754543|ref|YP_843661.1| - 2.7e-65 218.6 2.2 3.7e-65 218.1 2.2 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|116754543|ref|YP_843661.1| - 5.5e-35 120.1 0.0 1.3e-34 118.9 0.0 1.6 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Ldh_1_N PF00056.23 gi|116754543|ref|YP_843661.1| - 0.071 13.2 0.2 0.56 10.3 0.1 2.2 1 1 1 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DUF2121 PF09894.9 gi|116754544|ref|YP_843662.1| - 2.4e-62 210.0 0.0 2.8e-62 209.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) DUF779 PF05610.11 gi|116754544|ref|YP_843662.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF779) NTP_transf_3 PF12804.7 gi|116754545|ref|YP_843663.1| - 6.7e-31 107.8 1.1 8.2e-31 107.5 1.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|116754545|ref|YP_843663.1| - 4.5e-06 26.6 0.1 2.8e-05 24.0 0.1 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|116754545|ref|YP_843663.1| - 0.0053 16.4 0.0 0.0087 15.7 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyl transferase CTP_transf_3 PF02348.19 gi|116754545|ref|YP_843663.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase DJ-1_PfpI PF01965.24 gi|116754546|ref|YP_843664.1| - 9.5e-34 116.6 0.4 1.2e-33 116.2 0.4 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family Rubredoxin PF00301.20 gi|116754546|ref|YP_843664.1| - 9.5e-23 80.0 5.6 9.5e-23 80.0 5.6 2.0 2 0 0 2 2 2 1 Rubredoxin HypA PF01155.19 gi|116754546|ref|YP_843664.1| - 0.0078 16.2 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|116754546|ref|YP_843664.1| - 0.027 14.4 0.6 45 4.1 0.0 3.3 3 0 0 3 3 3 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|116754546|ref|YP_843664.1| - 0.027 14.6 2.7 0.16 12.2 2.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain PHD_4 PF16866.5 gi|116754546|ref|YP_843664.1| - 0.073 13.2 0.1 0.16 12.1 0.1 1.6 1 0 0 1 1 1 0 PHD-finger zinc_ribbon_2 PF13240.6 gi|116754546|ref|YP_843664.1| - 0.14 11.9 2.3 8.3 6.3 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|116754546|ref|YP_843664.1| - 0.2 11.6 6.8 1.3 9.0 1.6 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Rubredoxin_2 PF18073.1 gi|116754546|ref|YP_843664.1| - 0.41 10.4 8.1 3.7 7.3 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-HIT PF04438.16 gi|116754546|ref|YP_843664.1| - 0.74 9.7 3.4 20 5.2 0.0 2.3 2 0 0 2 2 2 0 HIT zinc finger Thymidylate_kin PF02223.17 gi|116754547|ref|YP_843665.1| - 3e-38 131.3 0.0 4.4e-38 130.8 0.0 1.2 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.6 gi|116754547|ref|YP_843665.1| - 0.0004 20.9 0.0 0.00088 19.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|116754547|ref|YP_843665.1| - 0.00043 20.2 0.0 0.0013 18.6 0.0 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.6 gi|116754547|ref|YP_843665.1| - 0.023 14.9 0.0 0.048 13.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|116754547|ref|YP_843665.1| - 0.026 14.8 0.0 0.072 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain Ploopntkinase1 PF18748.1 gi|116754547|ref|YP_843665.1| - 0.077 12.5 0.0 4.4 6.8 0.0 2.2 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 AAA_17 PF13207.6 gi|116754547|ref|YP_843665.1| - 0.087 13.2 0.0 5.3 7.5 0.0 2.7 2 1 1 3 3 3 0 AAA domain Arf PF00025.21 gi|116754547|ref|YP_843665.1| - 0.091 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family Zeta_toxin PF06414.12 gi|116754547|ref|YP_843665.1| - 0.14 11.4 0.0 0.33 10.2 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin Defensin_int PF17858.1 gi|116754548|ref|YP_843666.1| - 0.55 10.3 8.0 5.2 7.1 0.7 2.3 2 0 0 2 2 2 0 Platypus intermediate defensin-like peptide Response_reg PF00072.24 gi|116754549|ref|YP_843667.1| - 1.3e-21 76.8 0.0 1.6e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Epimerase_2 PF02350.19 gi|116754549|ref|YP_843667.1| - 0.16 10.8 0.0 0.22 10.4 0.0 1.1 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase FGGY_N PF00370.21 gi|116754550|ref|YP_843668.1| - 6e-31 107.9 0.0 1.7e-30 106.4 0.0 1.8 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|116754550|ref|YP_843668.1| - 1.5e-23 83.6 0.1 2.3e-23 83.0 0.1 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|116754550|ref|YP_843668.1| - 0.012 15.1 0.0 0.037 13.5 0.0 1.8 3 0 0 3 3 3 0 BadF/BadG/BcrA/BcrD ATPase family Fels1 PF05666.11 gi|116754550|ref|YP_843668.1| - 0.053 13.2 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Fels-1 Prophage Protein-like PolC_DP2 PF03833.13 gi|116754551|ref|YP_843669.1| - 0 1282.1 0.0 0 1281.2 0.0 1.4 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 DZR PF12773.7 gi|116754551|ref|YP_843669.1| - 0.02 14.9 16.6 1.5 8.9 0.6 2.9 2 1 1 3 3 3 0 Double zinc ribbon DUF2072 PF09845.9 gi|116754551|ref|YP_843669.1| - 1.6 9.0 7.3 0.77 10.0 0.1 2.6 2 1 0 2 2 2 0 Zn-ribbon containing protein HypA PF01155.19 gi|116754551|ref|YP_843669.1| - 2.7 8.0 15.5 0.35 10.9 0.2 3.2 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C4_Topoisom PF01396.19 gi|116754551|ref|YP_843669.1| - 5.3 6.9 11.1 1.3 8.8 0.2 3.6 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|116754551|ref|YP_843669.1| - 7.5 6.1 28.8 1.2 8.6 1.8 5.2 5 0 0 5 5 5 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|116754551|ref|YP_843669.1| - 8.6 6.9 15.7 5.5 7.5 0.1 4.9 6 0 0 6 6 6 0 zinc-finger binding domain of transposase IS66 DUF296 PF03479.15 gi|116754552|ref|YP_843670.1| - 2.8e-21 75.9 0.0 3.1e-21 75.8 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain AIRS_C PF02769.22 gi|116754553|ref|YP_843671.1| - 1.1e-21 77.6 0.0 2.1e-21 76.7 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|116754553|ref|YP_843671.1| - 3.8e-16 59.5 0.3 6e-16 58.9 0.3 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AA_kinase PF00696.28 gi|116754554|ref|YP_843672.1| - 1.2e-48 165.8 0.4 2.4e-48 164.8 0.0 1.7 2 0 0 2 2 2 1 Amino acid kinase family ACT PF01842.25 gi|116754554|ref|YP_843672.1| - 5.1e-26 90.1 2.6 9e-13 47.7 0.1 3.1 3 0 0 3 3 3 2 ACT domain ACT_7 PF13840.6 gi|116754554|ref|YP_843672.1| - 2.8e-25 87.9 0.5 9.8e-14 50.9 0.2 2.6 2 0 0 2 2 2 2 ACT domain LytR_C PF13399.6 gi|116754554|ref|YP_843672.1| - 7.6e-05 23.6 0.1 0.017 16.1 0.1 2.4 1 1 1 2 2 2 1 LytR cell envelope-related transcriptional attenuator ACT_6 PF13740.6 gi|116754554|ref|YP_843672.1| - 0.0015 18.5 0.5 0.048 13.7 0.1 2.8 3 0 0 3 3 3 1 ACT domain CarS-like PF01864.17 gi|116754554|ref|YP_843672.1| - 0.059 13.4 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 CDP-archaeol synthase Nitro_FeMo-Co PF02579.17 gi|116754554|ref|YP_843672.1| - 0.46 10.8 2.2 16 5.9 0.2 2.8 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor CPSase_L_D2 PF02786.17 gi|116754555|ref|YP_843673.1| - 9.6e-107 355.3 0.6 9.4e-71 237.7 0.1 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|116754555|ref|YP_843673.1| - 1.6e-43 147.9 0.0 3.9e-43 146.7 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|116754555|ref|YP_843673.1| - 9e-20 70.7 2.1 4.4e-18 65.3 0.0 4.3 6 0 0 6 6 5 1 MGS-like domain ATP-grasp PF02222.22 gi|116754555|ref|YP_843673.1| - 1.5e-19 70.2 0.1 1.4e-09 37.8 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|116754555|ref|YP_843673.1| - 3.2e-15 56.2 0.0 2.1e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|116754555|ref|YP_843673.1| - 8.6e-15 54.6 0.1 2e-06 27.6 0.0 2.7 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|116754555|ref|YP_843673.1| - 2e-13 50.7 0.2 1.4e-05 25.2 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|116754555|ref|YP_843673.1| - 2.2e-07 30.9 0.0 0.018 14.8 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|116754555|ref|YP_843673.1| - 5.5e-06 26.0 0.1 0.0042 16.6 0.0 3.2 2 1 1 3 3 3 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|116754555|ref|YP_843673.1| - 2.1e-05 24.2 0.0 0.073 12.6 0.0 2.8 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.11 gi|116754555|ref|YP_843673.1| - 0.00055 19.6 0.0 0.021 14.4 0.0 2.7 2 0 0 2 2 2 1 RimK-like ATP-grasp domain MerR-DNA-bind PF09278.11 gi|116754555|ref|YP_843673.1| - 0.047 14.2 1.2 15 6.2 0.0 4.1 4 1 0 4 4 4 0 MerR, DNA binding YjeF_N PF03853.15 gi|116754555|ref|YP_843673.1| - 0.082 12.8 0.0 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 YjeF-related protein N-terminus STAS PF01740.21 gi|116754555|ref|YP_843673.1| - 0.096 12.3 0.0 11 5.7 0.0 2.8 2 0 0 2 2 2 0 STAS domain Epimerase PF01370.21 gi|116754555|ref|YP_843673.1| - 0.1 12.1 0.0 4.7 6.6 0.0 2.8 2 1 1 3 3 3 0 NAD dependent epimerase/dehydratase family PS_pyruv_trans PF04230.13 gi|116754555|ref|YP_843673.1| - 0.18 11.7 0.0 1.2 9.0 0.0 2.4 3 0 0 3 3 3 0 Polysaccharide pyruvyl transferase CPSase_sm_chain PF00988.22 gi|116754556|ref|YP_843674.1| - 2.1e-44 150.4 0.0 3.3e-44 149.8 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|116754556|ref|YP_843674.1| - 1.9e-40 138.6 0.0 2.8e-40 138.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|116754556|ref|YP_843674.1| - 1.2e-09 38.2 0.0 4.7e-07 29.8 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 OTCace_N PF02729.21 gi|116754557|ref|YP_843675.1| - 5.6e-52 175.7 0.0 1.6e-51 174.2 0.0 1.7 1 1 1 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|116754557|ref|YP_843675.1| - 3.4e-27 95.4 0.0 4.8e-27 95.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|116754558|ref|YP_843676.1| - 3.7e-35 120.0 1.1 4.8e-35 119.7 1.1 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|116754558|ref|YP_843676.1| - 4.1e-16 58.6 0.8 6.7e-16 57.9 0.8 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain T2SSE PF00437.20 gi|116754558|ref|YP_843676.1| - 0.016 14.3 0.1 0.019 14.1 0.1 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein PGM_PMM_I PF02878.16 gi|116754559|ref|YP_843677.1| - 3e-23 82.1 0.0 8.4e-23 80.6 0.0 1.8 1 1 1 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|116754559|ref|YP_843677.1| - 4.2e-18 65.9 0.1 8.8e-18 64.8 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|116754559|ref|YP_843677.1| - 7.5e-18 64.8 0.0 1.5e-17 63.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|116754559|ref|YP_843677.1| - 5.9e-10 39.2 0.0 2.1e-09 37.4 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Glycos_transf_2 PF00535.26 gi|116754560|ref|YP_843678.1| - 7.8e-19 68.1 0.0 1.2e-18 67.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|116754560|ref|YP_843678.1| - 2.9e-08 33.9 0.0 4.6e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|116754560|ref|YP_843678.1| - 0.00054 20.4 0.0 0.00094 19.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Tetraspanin PF00335.20 gi|116754560|ref|YP_843678.1| - 0.14 11.8 0.6 0.21 11.3 0.6 1.2 1 0 0 1 1 1 0 Tetraspanin family Transglut_core3 PF13471.6 gi|116754561|ref|YP_843679.1| - 0.00053 19.9 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily FMN_red PF03358.15 gi|116754562|ref|YP_843680.1| - 2.1e-15 56.8 0.4 1.3e-10 41.2 0.0 2.4 2 1 1 3 3 3 2 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.7 gi|116754562|ref|YP_843680.1| - 2.4e-13 50.5 0.0 3.2e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|116754562|ref|YP_843680.1| - 3.2e-11 43.6 0.1 4.3e-11 43.2 0.1 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|116754562|ref|YP_843680.1| - 2.9e-07 30.3 0.0 3.7e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_2 PF02525.17 gi|116754562|ref|YP_843680.1| - 4.5e-05 23.2 0.0 0.00023 20.9 0.0 1.9 1 1 0 1 1 1 1 Flavodoxin-like fold DUF917 PF06032.12 gi|116754562|ref|YP_843680.1| - 0.028 13.3 0.4 0.04 12.8 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF917) IF-2B PF01008.17 gi|116754563|ref|YP_843681.1| - 5.4e-87 291.6 0.1 6.1e-87 291.4 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family FumaraseC_C PF10415.9 gi|116754563|ref|YP_843681.1| - 0.032 14.7 0.2 0.82 10.1 0.0 2.8 3 0 0 3 3 3 0 Fumarase C C-terminus Aminotran_1_2 PF00155.21 gi|116754564|ref|YP_843682.1| - 1.4e-42 146.2 0.0 3.9e-42 144.7 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|116754564|ref|YP_843682.1| - 0.0013 17.7 0.0 0.0024 16.8 0.0 1.3 1 0 0 1 1 1 1 Allinase NRDD PF13597.6 gi|116754565|ref|YP_843683.1| - 4.9e-159 530.7 0.0 5.8e-159 530.5 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Fer4 PF00037.27 gi|116754566|ref|YP_843684.1| - 3.6e-19 67.7 17.3 2.1e-10 40.0 4.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|116754566|ref|YP_843684.1| - 4.2e-14 51.9 17.0 7.3e-08 32.2 4.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|116754566|ref|YP_843684.1| - 1.1e-12 47.2 16.3 1.9e-07 30.7 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116754566|ref|YP_843684.1| - 2.1e-11 43.8 12.8 3.3e-11 43.2 12.9 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754566|ref|YP_843684.1| - 4.6e-11 43.1 13.1 6.4e-11 42.7 13.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754566|ref|YP_843684.1| - 5e-11 42.6 14.1 5.5e-11 42.4 14.1 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116754566|ref|YP_843684.1| - 3.4e-10 39.9 15.5 7.2e-10 38.8 15.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116754566|ref|YP_843684.1| - 1.8e-09 38.4 14.0 9.8e-05 23.2 4.7 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|116754566|ref|YP_843684.1| - 9.9e-08 32.4 16.4 0.00029 21.3 2.7 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|116754566|ref|YP_843684.1| - 4.2e-07 30.0 15.7 0.0006 20.1 5.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|116754566|ref|YP_843684.1| - 8e-06 26.4 18.5 0.0012 19.6 5.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|116754566|ref|YP_843684.1| - 8.3e-06 26.5 15.4 0.00021 21.9 2.5 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|116754566|ref|YP_843684.1| - 1.8e-05 25.2 16.7 0.0051 17.3 3.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|116754566|ref|YP_843684.1| - 9.6e-05 22.8 17.4 0.025 15.0 5.1 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|116754566|ref|YP_843684.1| - 0.00017 22.4 7.5 0.074 13.9 1.5 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|116754566|ref|YP_843684.1| - 0.0011 19.1 7.2 0.0012 18.9 7.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|116754566|ref|YP_843684.1| - 0.0097 16.1 14.8 0.13 12.5 3.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|116754566|ref|YP_843684.1| - 0.24 11.5 7.7 0.3 11.2 7.7 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster ETF_QO PF05187.13 gi|116754566|ref|YP_843684.1| - 1.2 9.3 6.8 1.5 9.0 0.7 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S AAA PF00004.29 gi|116754567|ref|YP_843685.1| - 1.6e-43 148.3 0.5 7.6e-43 146.1 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|116754567|ref|YP_843685.1| - 1.5e-15 56.7 0.5 4.8e-15 55.1 0.5 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_16 PF13191.6 gi|116754567|ref|YP_843685.1| - 4.1e-05 24.0 3.3 4.5e-05 23.9 0.3 2.7 2 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|116754567|ref|YP_843685.1| - 0.00024 20.9 0.0 0.001 18.8 0.0 2.0 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|116754567|ref|YP_843685.1| - 0.00031 20.8 0.9 0.0028 17.7 0.2 2.9 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|116754567|ref|YP_843685.1| - 0.0004 20.5 0.2 0.0022 18.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|116754567|ref|YP_843685.1| - 0.00091 19.5 2.1 0.038 14.3 0.1 3.1 2 1 0 3 3 3 1 AAA domain AAA_17 PF13207.6 gi|116754567|ref|YP_843685.1| - 0.0018 18.7 0.5 0.049 14.1 0.0 2.7 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|116754567|ref|YP_843685.1| - 0.0068 16.8 0.0 0.067 13.6 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_14 PF13173.6 gi|116754567|ref|YP_843685.1| - 0.0079 16.2 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|116754567|ref|YP_843685.1| - 0.0083 15.5 0.3 0.21 10.9 0.0 2.9 1 1 0 2 2 2 1 KaiC TIP49 PF06068.13 gi|116754567|ref|YP_843685.1| - 0.01 15.1 0.0 0.027 13.7 0.0 1.6 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_33 PF13671.6 gi|116754567|ref|YP_843685.1| - 0.011 15.9 0.2 0.028 14.6 0.0 2.0 2 0 0 2 2 1 0 AAA domain IstB_IS21 PF01695.17 gi|116754567|ref|YP_843685.1| - 0.014 15.1 0.1 0.06 13.1 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF815 PF05673.13 gi|116754567|ref|YP_843685.1| - 0.022 13.9 0.0 0.049 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|116754567|ref|YP_843685.1| - 0.023 15.2 0.1 0.074 13.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain SKA2 PF16740.5 gi|116754567|ref|YP_843685.1| - 0.069 12.9 1.4 0.23 11.2 1.4 1.8 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 AAA_24 PF13479.6 gi|116754567|ref|YP_843685.1| - 0.07 12.8 0.3 0.35 10.6 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|116754567|ref|YP_843685.1| - 0.11 12.4 0.0 0.28 11.0 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) bZIP_1 PF00170.21 gi|116754567|ref|YP_843685.1| - 0.13 12.4 8.1 0.23 11.6 0.8 2.7 1 1 1 2 2 2 0 bZIP transcription factor Cep57_CLD_2 PF14197.6 gi|116754567|ref|YP_843685.1| - 0.32 11.1 10.2 0.85 9.7 10.2 1.7 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 Mto2_bdg PF12808.7 gi|116754567|ref|YP_843685.1| - 0.53 10.6 8.6 1.2 9.5 1.3 2.6 2 0 0 2 2 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region TMF_TATA_bd PF12325.8 gi|116754567|ref|YP_843685.1| - 0.79 10.0 11.5 0.034 14.4 4.6 2.2 3 0 0 3 3 2 0 TATA element modulatory factor 1 TATA binding Ax_dynein_light PF10211.9 gi|116754567|ref|YP_843685.1| - 0.89 9.5 5.6 1.9 8.4 5.6 1.5 1 0 0 1 1 1 0 Axonemal dynein light chain ZapB PF06005.12 gi|116754567|ref|YP_843685.1| - 1.8 9.1 9.8 18 5.8 9.9 2.5 1 1 0 1 1 1 0 Cell division protein ZapB CENP-H PF05837.12 gi|116754567|ref|YP_843685.1| - 7.2 7.1 7.3 4.3 7.8 2.7 2.4 2 0 0 2 2 2 0 Centromere protein H (CENP-H) DUF2099 PF09872.9 gi|116754568|ref|YP_843686.1| - 4.7e-94 314.4 0.3 5.5e-94 314.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Methyltransf_25 PF13649.6 gi|116754569|ref|YP_843687.1| - 0.00035 21.2 0.0 0.0011 19.6 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|116754569|ref|YP_843687.1| - 0.00094 19.0 0.0 0.0014 18.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|116754569|ref|YP_843687.1| - 0.002 18.0 0.0 0.0037 17.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|116754569|ref|YP_843687.1| - 0.0034 16.8 0.0 0.0096 15.3 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|116754569|ref|YP_843687.1| - 0.0041 17.7 0.0 0.009 16.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|116754569|ref|YP_843687.1| - 0.044 13.4 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW TrkA_N PF02254.18 gi|116754570|ref|YP_843688.1| - 7.2e-16 58.5 0.0 1.7e-15 57.3 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|116754570|ref|YP_843688.1| - 1.1e-08 34.8 1.2 8.6e-08 31.9 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain HTH_46 PF15977.5 gi|116754570|ref|YP_843688.1| - 0.073 13.1 0.1 0.19 11.7 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA binding Na_H_Exchanger PF00999.21 gi|116754571|ref|YP_843689.1| - 1.1e-63 215.4 55.4 1.4e-63 215.0 55.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|116754571|ref|YP_843689.1| - 0.022 15.0 0.1 0.044 14.0 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain SurE PF01975.17 gi|116754572|ref|YP_843690.1| - 1.3e-52 178.4 0.5 1.6e-52 178.2 0.5 1.0 1 0 0 1 1 1 1 Survival protein SurE WW PF00397.26 gi|116754572|ref|YP_843690.1| - 0.26 11.4 0.5 0.43 10.7 0.5 1.3 1 0 0 1 1 1 0 WW domain NosD PF05048.13 gi|116754573|ref|YP_843691.1| - 4.5e-46 157.1 42.9 9.9e-30 103.6 13.6 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|116754573|ref|YP_843691.1| - 1.2e-33 116.2 51.8 3.2e-19 69.3 27.8 2.2 1 1 1 2 2 2 2 Right handed beta helix region Rhodanese PF00581.20 gi|116754574|ref|YP_843692.1| - 3.9e-18 65.9 0.0 2.6e-11 44.0 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain FlgD_ig PF13860.6 gi|116754574|ref|YP_843692.1| - 0.1 12.5 0.1 0.25 11.2 0.1 1.6 1 0 0 1 1 1 0 FlgD Ig-like domain Peptidase_S8 PF00082.22 gi|116754575|ref|YP_843693.1| - 2.6e-54 184.5 0.1 3.3e-54 184.2 0.1 1.1 1 0 0 1 1 1 1 Subtilase family NAD_kinase PF01513.21 gi|116754576|ref|YP_843694.1| - 2.1e-46 158.5 0.0 2.3e-46 158.3 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|116754576|ref|YP_843694.1| - 4e-05 23.2 0.1 9.9e-05 22.0 0.1 1.7 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.22 gi|116754576|ref|YP_843694.1| - 0.00029 20.8 0.0 0.00053 20.0 0.0 1.4 1 0 0 1 1 1 1 DeoR C terminal sensor domain PALP PF00291.25 gi|116754577|ref|YP_843695.1| - 8.7e-39 133.7 0.0 1.1e-38 133.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme SSF PF00474.17 gi|116754578|ref|YP_843696.1| - 2.7e-43 148.4 31.9 3.9e-43 147.9 31.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Endonuclease_5 PF04493.14 gi|116754579|ref|YP_843697.1| - 1.6e-65 220.5 0.0 1.9e-65 220.3 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|116754579|ref|YP_843697.1| - 0.022 14.2 0.1 0.043 13.2 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function DUF99 NHL PF01436.21 gi|116754580|ref|YP_843698.1| - 9e-30 101.2 0.2 0.00029 20.7 0.0 6.7 6 0 0 6 6 6 6 NHL repeat Thioredoxin_8 PF13905.6 gi|116754580|ref|YP_843698.1| - 6.3e-10 39.3 0.0 1.2e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.21 gi|116754580|ref|YP_843698.1| - 3.2e-09 36.8 0.0 5.8e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|116754580|ref|YP_843698.1| - 5.4e-06 26.2 0.0 1.3e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Redoxin Thioredoxin PF00085.20 gi|116754580|ref|YP_843698.1| - 0.0088 16.0 0.0 0.19 11.7 0.0 2.3 2 0 0 2 2 2 1 Thioredoxin PQQ_3 PF13570.6 gi|116754580|ref|YP_843698.1| - 0.021 15.3 7.7 11 6.7 0.1 5.5 6 1 0 6 6 6 0 PQQ-like domain LVIVD PF08309.11 gi|116754580|ref|YP_843698.1| - 0.13 11.6 2.8 1.1 8.6 0.1 3.5 4 0 0 4 4 4 0 LVIVD repeat Thioredoxin_2 PF13098.6 gi|116754580|ref|YP_843698.1| - 0.13 12.7 0.0 0.26 11.8 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like domain Radical_SAM PF04055.21 gi|116754581|ref|YP_843699.1| - 2.1e-10 41.3 0.0 2.8e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|116754581|ref|YP_843699.1| - 2.7e-07 30.6 1.1 0.0037 17.0 2.8 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) SdrD_B PF17210.3 gi|116754582|ref|YP_843700.1| - 1.1e-13 51.4 2.5 3.3e-12 46.6 0.5 2.5 2 0 0 2 2 2 1 SdrD B-like domain CarboxypepD_reg PF13620.6 gi|116754582|ref|YP_843700.1| - 8.8e-06 25.9 3.7 1.7e-05 25.0 0.5 2.8 1 1 1 2 2 2 1 Carboxypeptidase regulatory-like domain DUF3823 PF12866.7 gi|116754582|ref|YP_843700.1| - 0.0015 18.8 0.0 0.0032 17.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3823) N-terminal domain DUF2012 PF09430.10 gi|116754582|ref|YP_843700.1| - 0.0015 18.6 0.3 0.011 15.8 0.0 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF2012) SpaA PF17802.1 gi|116754582|ref|YP_843700.1| - 0.0083 16.4 4.0 0.022 15.1 3.7 2.0 1 1 0 1 1 1 1 Prealbumin-like fold domain CarbopepD_reg_2 PF13715.6 gi|116754582|ref|YP_843700.1| - 0.032 14.2 0.6 0.18 11.8 0.2 2.6 2 1 0 2 2 2 0 CarboxypepD_reg-like domain LPAM_1 PF08139.12 gi|116754582|ref|YP_843700.1| - 0.3 11.7 1.6 0.61 10.7 1.6 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF1981 PF09324.10 gi|116754583|ref|YP_843701.1| - 0.14 12.0 0.0 0.6 10.0 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1981) DsrH PF04077.12 gi|116754585|ref|YP_843703.1| - 8.4e-07 29.0 0.0 1.1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 DsrH like protein DrsE PF02635.15 gi|116754586|ref|YP_843704.1| - 0.00015 22.1 0.0 0.00023 21.5 0.0 1.3 1 1 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.12 gi|116754586|ref|YP_843704.1| - 0.00046 20.3 0.0 0.00054 20.0 0.0 1.1 1 0 0 1 1 1 1 DsrH like protein DrsE PF02635.15 gi|116754587|ref|YP_843705.1| - 1.4e-16 60.9 0.0 1.6e-16 60.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family FeS PF04060.13 gi|116754588|ref|YP_843706.1| - 1.7e-13 50.0 0.8 2.7e-13 49.3 0.8 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.7 gi|116754588|ref|YP_843706.1| - 3.7e-05 23.7 0.0 0.00017 21.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|116754588|ref|YP_843706.1| - 8.3e-05 22.4 0.1 0.00028 20.7 0.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|116754588|ref|YP_843706.1| - 0.032 14.2 0.5 0.12 12.4 0.0 2.2 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain YhfH PF14149.6 gi|116754588|ref|YP_843706.1| - 0.037 14.0 0.1 0.068 13.2 0.1 1.4 1 0 0 1 1 1 0 YhfH-like protein AAA_assoc_C PF09821.9 gi|116754588|ref|YP_843706.1| - 0.05 14.1 0.0 0.4 11.2 0.0 2.2 2 0 0 2 2 2 0 C-terminal AAA-associated domain HTH_45 PF14947.6 gi|116754588|ref|YP_843706.1| - 0.066 13.2 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2513 PF10711.9 gi|116754588|ref|YP_843706.1| - 0.11 12.9 0.1 0.36 11.2 0.0 1.9 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) SBF PF01758.16 gi|116754589|ref|YP_843707.1| - 1.2e-65 220.9 12.5 1.2e-65 220.9 12.5 2.1 3 0 0 3 3 3 1 Sodium Bile acid symporter family KASH PF10541.9 gi|116754589|ref|YP_843707.1| - 0.36 11.1 0.1 0.36 11.1 0.1 3.2 3 0 0 3 3 3 0 Nuclear envelope localisation domain Rhodanese PF00581.20 gi|116754590|ref|YP_843708.1| - 1.5e-19 70.5 0.0 9.5e-10 39.0 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain AMP-binding PF00501.28 gi|116754590|ref|YP_843708.1| - 0.19 10.3 0.0 0.39 9.2 0.0 1.5 2 0 0 2 2 2 0 AMP-binding enzyme HTH_5 PF01022.20 gi|116754591|ref|YP_843709.1| - 4.7e-18 64.8 0.1 1.1e-17 63.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|116754591|ref|YP_843709.1| - 3.5e-16 59.0 0.1 1.2e-15 57.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|116754591|ref|YP_843709.1| - 4.8e-05 23.1 0.0 0.00014 21.7 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF742 PF05331.11 gi|116754591|ref|YP_843709.1| - 0.0026 17.5 0.0 0.003 17.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF742) DUF4423 PF14394.6 gi|116754591|ref|YP_843709.1| - 0.029 14.1 0.0 0.047 13.4 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_45 PF14947.6 gi|116754591|ref|YP_843709.1| - 0.044 13.8 0.0 0.071 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.6 gi|116754591|ref|YP_843709.1| - 0.059 13.0 0.1 0.28 10.8 0.1 2.1 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|116754591|ref|YP_843709.1| - 0.07 12.9 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain PaaX PF07848.12 gi|116754591|ref|YP_843709.1| - 0.083 13.1 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein HTH_38 PF13936.6 gi|116754591|ref|YP_843709.1| - 0.1 12.4 0.0 0.36 10.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2513 PF10711.9 gi|116754591|ref|YP_843709.1| - 0.11 12.9 0.0 0.13 12.6 0.0 1.4 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_34 PF13601.6 gi|116754591|ref|YP_843709.1| - 0.13 12.5 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|116754591|ref|YP_843709.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family FapA PF03961.13 gi|116754592|ref|YP_843710.1| - 0.069 11.7 1.1 0.088 11.4 1.1 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A FliC PF12445.8 gi|116754592|ref|YP_843710.1| - 0.1 13.0 0.6 8.6 6.7 0.0 2.7 3 0 0 3 3 3 0 Flagellin protein EI24 PF07264.11 gi|116754592|ref|YP_843710.1| - 2.4 8.4 16.5 7 6.8 16.5 2.0 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Big_7 PF17957.1 gi|116754592|ref|YP_843710.1| - 5.2 7.9 6.0 30 5.5 3.3 2.6 2 1 0 2 2 2 0 Bacterial Ig domain Ribosomal_S8e PF01201.22 gi|116754593|ref|YP_843711.1| - 2.5e-38 131.3 0.5 2.8e-38 131.2 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e AAA_lid_10 PF17872.1 gi|116754593|ref|YP_843711.1| - 0.019 15.1 0.0 0.023 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA lid domain CarboxypepD_reg PF13620.6 gi|116754594|ref|YP_843712.1| - 1.1e-08 35.2 0.7 0.0044 17.3 0.1 2.3 1 1 1 2 2 2 2 Carboxypeptidase regulatory-like domain Big_2 PF02368.18 gi|116754594|ref|YP_843712.1| - 0.0041 17.0 0.9 0.96 9.4 0.1 2.4 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 2) DUF1326 PF07040.11 gi|116754594|ref|YP_843712.1| - 0.01 15.8 0.7 2.3 8.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1326) DUF3005 PF11448.8 gi|116754594|ref|YP_843712.1| - 0.014 15.4 0.2 6.4 6.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3005) PEGA PF08308.11 gi|116754594|ref|YP_843712.1| - 0.027 14.3 0.1 9.7 6.2 0.0 2.3 2 0 0 2 2 2 0 PEGA domain CpeS PF09367.10 gi|116754594|ref|YP_843712.1| - 0.082 12.8 0.0 13 5.7 0.0 2.2 2 0 0 2 2 2 0 CpeS-like protein HALZ PF02183.18 gi|116754594|ref|YP_843712.1| - 0.27 11.5 3.4 13 6.1 0.3 2.2 2 0 0 2 2 2 0 Homeobox associated leucine zipper Big_1 PF02369.16 gi|116754594|ref|YP_843712.1| - 0.3 11.1 6.9 7.5 6.6 0.8 2.9 2 2 0 2 2 2 0 Bacterial Ig-like domain (group 1) Dodecin PF07311.12 gi|116754596|ref|YP_843714.1| - 1.2e-25 89.5 0.7 1.4e-25 89.3 0.7 1.1 1 0 0 1 1 1 1 Dodecin ApbE PF02424.15 gi|116754597|ref|YP_843715.1| - 0.095 12.2 2.9 0.42 10.1 0.1 2.3 2 1 0 2 2 2 0 ApbE family YorP PF09629.10 gi|116754597|ref|YP_843715.1| - 0.1 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 YorP protein HMGL-like PF00682.19 gi|116754598|ref|YP_843716.1| - 8.5e-85 284.5 2.4 1.6e-84 283.6 2.4 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|116754598|ref|YP_843716.1| - 1e-32 112.8 2.7 2.2e-32 111.8 2.7 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain TatD_DNase PF01026.21 gi|116754599|ref|YP_843717.1| - 2.3e-66 223.8 0.0 2.6e-66 223.6 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|116754599|ref|YP_843717.1| - 0.0012 18.2 0.1 0.0023 17.3 0.1 1.6 1 1 0 1 1 1 1 Amidohydrolase family Phage_TAC_7 PF10109.9 gi|116754599|ref|YP_843717.1| - 0.039 14.1 0.0 0.96 9.6 0.0 2.3 2 0 0 2 2 2 0 Phage tail assembly chaperone proteins, E, or 41 or 14 NYN PF01936.18 gi|116754600|ref|YP_843718.1| - 1.7e-22 80.5 0.0 2.1e-22 80.2 0.0 1.1 1 0 0 1 1 1 1 NYN domain Rhomboid PF01694.22 gi|116754601|ref|YP_843719.1| - 7.3e-34 116.9 12.6 7.3e-34 116.9 12.6 1.6 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|116754601|ref|YP_843719.1| - 1.9e-06 28.4 0.3 1.9e-06 28.4 0.3 1.7 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) GTP_EFTU PF00009.27 gi|116754602|ref|YP_843720.1| - 1.6e-33 115.9 0.0 1.4e-32 112.8 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|116754602|ref|YP_843720.1| - 2.9e-32 110.4 1.6 2.9e-32 110.4 1.6 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|116754602|ref|YP_843720.1| - 1.1e-18 67.3 0.7 3e-18 65.9 0.1 2.0 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|116754602|ref|YP_843720.1| - 3.1e-09 37.1 6.5 1.1e-08 35.4 0.1 3.3 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|116754602|ref|YP_843720.1| - 3.8e-07 30.2 0.1 1.7e-06 28.1 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|116754602|ref|YP_843720.1| - 0.044 14.0 0.0 0.14 12.4 0.0 1.9 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|116754602|ref|YP_843720.1| - 0.072 12.8 0.2 0.66 9.7 0.0 2.7 4 0 0 4 4 4 0 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.23 gi|116754602|ref|YP_843720.1| - 0.08 13.0 0.0 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 Dynamin family DapH_N PF08503.10 gi|116754602|ref|YP_843720.1| - 0.12 12.6 0.4 0.46 10.7 0.0 2.1 2 0 0 2 2 2 0 Tetrahydrodipicolinate succinyltransferase N-terminal DUF5042 PF16445.5 gi|116754603|ref|YP_843721.1| - 0.13 10.7 0.0 0.16 10.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5042) Adenylsucc_synt PF00709.21 gi|116754604|ref|YP_843722.1| - 2.5e-159 530.7 0.0 2.8e-159 530.6 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Pribosyltran PF00156.27 gi|116754605|ref|YP_843723.1| - 1.8e-08 34.0 0.1 2.8e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|116754605|ref|YP_843723.1| - 0.011 15.1 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|116754605|ref|YP_843723.1| - 0.034 13.6 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Aminotran_4 PF01063.19 gi|116754606|ref|YP_843724.1| - 1.7e-57 194.8 0.0 2e-57 194.6 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Polysacc_deac_2 PF04748.13 gi|116754606|ref|YP_843724.1| - 0.12 11.6 0.0 0.93 8.6 0.0 2.1 2 0 0 2 2 2 0 Divergent polysaccharide deacetylase DMRL_synthase PF00885.19 gi|116754607|ref|YP_843725.1| - 1.7e-33 115.4 0.0 1.8e-33 115.3 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Metallophos_3 PF14582.6 gi|116754607|ref|YP_843725.1| - 0.081 12.2 0.7 8.9 5.6 0.1 2.5 2 1 1 3 3 3 0 Metallophosphoesterase, calcineurin superfamily Aminotran_1_2 PF00155.21 gi|116754608|ref|YP_843726.1| - 1.6e-64 218.4 0.0 2e-64 218.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|116754608|ref|YP_843726.1| - 7.1e-09 35.4 0.1 1e-08 34.9 0.1 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|116754608|ref|YP_843726.1| - 0.00011 20.9 0.0 0.00017 20.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Rsbr_N PF08678.10 gi|116754608|ref|YP_843726.1| - 0.0094 16.0 0.0 0.051 13.7 0.0 2.0 2 0 0 2 2 2 1 Rsbr N terminal Beta_elim_lyase PF01212.21 gi|116754608|ref|YP_843726.1| - 0.12 11.6 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase Exonuc_VII_L PF02601.15 gi|116754609|ref|YP_843727.1| - 3.1e-76 256.9 0.0 3.5e-68 230.4 0.2 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|116754609|ref|YP_843727.1| - 1.3e-26 92.6 0.1 2.3e-26 91.8 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|116754609|ref|YP_843727.1| - 1.5e-08 34.5 0.0 2.5e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RecJ_OB PF17768.1 gi|116754609|ref|YP_843727.1| - 0.062 13.6 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 RecJ OB domain DeoC PF01791.9 gi|116754612|ref|YP_843730.1| - 1.3e-63 214.8 0.0 1.5e-63 214.6 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase TMP-TENI PF02581.17 gi|116754612|ref|YP_843730.1| - 0.049 12.9 0.0 5.3 6.3 0.0 2.4 2 0 0 2 2 2 0 Thiamine monophosphate synthase PEP_mutase PF13714.6 gi|116754612|ref|YP_843730.1| - 0.072 12.5 0.4 19 4.6 0.0 3.1 2 1 1 4 4 4 0 Phosphoenolpyruvate phosphomutase DUF561 PF04481.12 gi|116754612|ref|YP_843730.1| - 0.091 11.9 0.1 9.1 5.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF561) PucR PF07905.11 gi|116754612|ref|YP_843730.1| - 0.11 12.8 0.0 5.2 7.4 0.0 2.6 3 0 0 3 3 3 0 Purine catabolism regulatory protein-like family CbiA PF01656.23 gi|116754613|ref|YP_843731.1| - 3.6e-05 23.8 0.0 3.9e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|116754613|ref|YP_843731.1| - 0.0009 19.1 0.1 0.0014 18.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|116754613|ref|YP_843731.1| - 0.0042 16.6 0.0 0.13 11.7 0.0 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Ribonuc_red_lgC PF02867.15 gi|116754614|ref|YP_843732.1| - 8.5e-154 512.9 0.0 6.1e-152 506.8 0.0 2.2 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|116754614|ref|YP_843732.1| - 2.3e-25 88.4 0.0 6.1e-25 87.0 0.0 1.8 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|116754614|ref|YP_843732.1| - 2.7e-24 85.5 0.9 8.5e-24 83.9 0.9 1.9 1 0 0 1 1 1 1 ATP cone domain HHH_8 PF14716.6 gi|116754615|ref|YP_843733.1| - 9.4e-26 90.0 4.0 5.2e-23 81.2 1.0 3.6 3 0 0 3 3 3 2 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.6 gi|116754615|ref|YP_843733.1| - 9.4e-21 73.8 0.1 2.8e-20 72.2 0.1 1.9 2 0 0 2 2 2 1 DNA polymerase beta thumb HHH_5 PF14520.6 gi|116754615|ref|YP_843733.1| - 7.1e-15 55.4 0.8 1.3e-09 38.6 0.1 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix domain PHP PF02811.19 gi|116754615|ref|YP_843733.1| - 1.7e-09 38.2 0.0 4.3e-09 36.9 0.0 1.8 1 1 0 1 1 1 1 PHP domain DNA_pol_B_palm PF14792.6 gi|116754615|ref|YP_843733.1| - 2.2e-09 37.5 0.3 9e-09 35.5 0.1 2.1 2 0 0 2 2 2 1 DNA polymerase beta palm HHH PF00633.23 gi|116754615|ref|YP_843733.1| - 3.9e-07 29.6 0.9 0.044 13.7 0.0 3.8 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|116754615|ref|YP_843733.1| - 7.3e-06 26.2 1.3 0.08 13.2 0.0 4.4 4 0 0 4 4 4 1 Helix-hairpin-helix motif DUF1992 PF09350.10 gi|116754615|ref|YP_843733.1| - 0.0013 18.8 0.0 0.0084 16.2 0.0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF1992) Cdd1 PF11731.8 gi|116754615|ref|YP_843733.1| - 0.002 18.3 0.1 2.4 8.5 0.0 2.8 1 1 1 2 2 2 2 Pathogenicity locus HHH_2 PF12826.7 gi|116754615|ref|YP_843733.1| - 0.0022 18.1 0.0 0.14 12.3 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|116754615|ref|YP_843733.1| - 0.0053 17.0 0.6 2.8 8.5 0.0 3.6 3 0 0 3 3 3 1 IMS family HHH motif DNA_pol_lambd_f PF10391.9 gi|116754615|ref|YP_843733.1| - 0.0068 16.2 0.0 0.26 11.1 0.0 2.7 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda NTP_transf_2 PF01909.23 gi|116754615|ref|YP_843733.1| - 0.011 16.0 0.0 0.029 14.7 0.0 1.8 1 0 0 1 1 1 0 Nucleotidyltransferase domain RNase_P_p30 PF01876.16 gi|116754615|ref|YP_843733.1| - 0.016 14.7 0.0 0.032 13.7 0.0 1.5 1 0 0 1 1 1 0 RNase P subunit p30 DUF3701 PF12482.8 gi|116754615|ref|YP_843733.1| - 0.016 15.3 0.8 5.2 7.2 0.0 3.1 4 0 0 4 4 3 0 Phage integrase protein HRDC PF00570.23 gi|116754615|ref|YP_843733.1| - 0.024 14.6 0.0 2 8.4 0.0 2.9 2 0 0 2 2 2 0 HRDC domain BBS1 PF14779.6 gi|116754615|ref|YP_843733.1| - 0.13 11.7 0.0 0.37 10.2 0.0 1.7 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 1 DUF5435 PF17503.2 gi|116754617|ref|YP_843735.1| - 0.063 13.0 0.0 0.082 12.6 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5435) eIF2_C PF09173.11 gi|116754619|ref|YP_843737.1| - 9.7e-32 109.1 1.3 1.8e-31 108.2 0.2 2.1 2 0 0 2 2 2 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|116754619|ref|YP_843737.1| - 2.8e-29 102.1 1.0 2.9e-28 98.7 1.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|116754619|ref|YP_843737.1| - 7.3e-08 32.7 2.0 2.5e-07 31.0 2.0 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|116754619|ref|YP_843737.1| - 1.5e-06 28.2 0.7 3.4e-05 23.8 0.2 2.3 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|116754619|ref|YP_843737.1| - 0.00031 20.7 0.2 0.00059 19.8 0.2 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|116754619|ref|YP_843737.1| - 0.0019 18.2 0.0 0.0046 17.0 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase cobW PF02492.19 gi|116754619|ref|YP_843737.1| - 0.012 15.2 0.1 0.33 10.5 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Nop10p PF04135.12 gi|116754619|ref|YP_843737.1| - 0.078 13.0 1.1 0.14 12.2 1.1 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family PduV-EutP PF10662.9 gi|116754619|ref|YP_843737.1| - 0.088 12.6 1.7 3.1 7.6 0.0 2.6 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Ras PF00071.22 gi|116754619|ref|YP_843737.1| - 0.1 12.2 0.3 0.26 10.9 0.1 1.7 2 0 0 2 2 2 0 Ras family PolC_DP2 PF03833.13 gi|116754619|ref|YP_843737.1| - 0.13 10.1 0.1 0.19 9.5 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 PIN_9 PF18477.1 gi|116754620|ref|YP_843738.1| - 1.4e-40 138.2 0.1 1.6e-40 138.0 0.1 1.0 1 0 0 1 1 1 1 PIN like domain PIN_10 PF18478.1 gi|116754620|ref|YP_843738.1| - 0.0014 18.8 0.2 0.0032 17.6 0.0 1.8 2 1 0 2 2 2 1 PIN like domain PIN PF01850.21 gi|116754620|ref|YP_843738.1| - 0.0018 18.8 0.0 0.0066 17.0 0.0 1.7 1 1 0 1 1 1 1 PIN domain PIN_4 PF13638.6 gi|116754620|ref|YP_843738.1| - 0.035 14.4 0.0 0.052 13.8 0.0 1.4 1 1 0 1 1 1 0 PIN domain SHS2_Rpb7-N PF03876.17 gi|116754621|ref|YP_843739.1| - 4.4e-19 68.6 0.1 9.6e-19 67.5 0.1 1.6 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|116754621|ref|YP_843739.1| - 5e-14 52.4 0.3 1.4e-13 51.0 0.3 1.8 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|116754621|ref|YP_843739.1| - 0.00026 21.3 1.1 0.00078 19.7 1.1 1.9 1 1 0 1 1 1 1 RNA polymerase III subunit Rpc25 S1_2 PF13509.6 gi|116754621|ref|YP_843739.1| - 0.085 12.9 0.0 0.41 10.7 0.0 2.2 1 1 0 1 1 1 0 S1 domain Spt4 PF06093.13 gi|116754622|ref|YP_843740.1| - 1.4e-12 47.6 0.0 1.7e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|116754622|ref|YP_843740.1| - 0.012 15.2 1.9 0.017 14.7 1.9 1.2 1 0 0 1 1 1 0 RecR protein TF_Zn_Ribbon PF08271.12 gi|116754622|ref|YP_843740.1| - 0.025 14.1 0.2 0.12 11.9 0.0 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|116754622|ref|YP_843740.1| - 0.052 13.0 1.8 0.071 12.5 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|116754622|ref|YP_843740.1| - 0.054 13.2 3.4 0.29 10.8 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|116754622|ref|YP_843740.1| - 0.22 11.6 2.6 0.79 9.9 2.6 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DUF359 PF04019.12 gi|116754623|ref|YP_843741.1| - 2.5e-41 140.2 0.0 3.2e-41 139.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.19 gi|116754624|ref|YP_843742.1| - 1.1e-20 73.4 0.1 1.3e-20 73.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|116754625|ref|YP_843743.1| - 6.8e-19 67.8 1.9 7.6e-19 67.6 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a DUF1451 PF07295.11 gi|116754625|ref|YP_843743.1| - 0.00071 19.6 0.8 0.00072 19.6 0.8 1.0 1 0 0 1 1 1 1 Zinc-ribbon containing domain zf-NADH-PPase PF09297.11 gi|116754625|ref|YP_843743.1| - 0.0013 18.3 2.8 0.0019 17.8 2.8 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain Ribosomal_L37e PF01907.19 gi|116754625|ref|YP_843743.1| - 0.0014 18.8 0.7 0.0017 18.5 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e IBR PF01485.21 gi|116754625|ref|YP_843743.1| - 0.009 16.2 0.3 0.0097 16.1 0.3 1.1 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain zinc_ribbon_2 PF13240.6 gi|116754625|ref|YP_843743.1| - 0.015 15.0 2.9 0.27 11.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|116754625|ref|YP_843743.1| - 0.031 14.3 3.5 0.058 13.4 3.3 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|116754625|ref|YP_843743.1| - 0.041 14.1 3.1 0.21 11.8 0.3 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) HypA PF01155.19 gi|116754625|ref|YP_843743.1| - 0.063 13.3 0.3 0.063 13.3 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|116754625|ref|YP_843743.1| - 0.066 13.1 4.0 0.37 10.8 4.0 2.0 1 1 0 1 1 1 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|116754625|ref|YP_843743.1| - 0.074 13.0 0.6 0.081 12.9 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain MqsA_antitoxin PF15731.5 gi|116754625|ref|YP_843743.1| - 0.078 13.1 0.2 0.089 12.9 0.2 1.3 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA zinc_ribbon_9 PF14369.6 gi|116754625|ref|YP_843743.1| - 0.12 12.7 3.5 0.35 11.2 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon TF_Zn_Ribbon PF08271.12 gi|116754625|ref|YP_843743.1| - 0.16 11.5 3.5 0.27 10.8 3.5 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|116754625|ref|YP_843743.1| - 0.22 11.0 5.0 0.34 10.4 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Fic PF02661.18 gi|116754626|ref|YP_843744.1| - 2.2e-07 31.7 0.2 6.9e-06 26.9 0.0 2.0 1 1 1 2 2 2 2 Fic/DOC family PS_Dcarbxylase PF02666.15 gi|116754628|ref|YP_843746.1| - 2.6e-27 95.7 0.2 3.6e-23 82.2 0.1 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase RnfC_N PF13375.6 gi|116754628|ref|YP_843746.1| - 0.0072 16.3 0.0 0.055 13.4 0.0 2.1 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.22 gi|116754628|ref|YP_843746.1| - 0.017 15.3 0.0 4.5 7.6 0.0 3.1 1 1 2 3 3 3 0 Peptidase family M23 CDP-OH_P_transf PF01066.21 gi|116754629|ref|YP_843747.1| - 9.2e-10 39.2 0.6 9.2e-10 39.2 0.6 3.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase CbiQ PF02361.16 gi|116754629|ref|YP_843747.1| - 0.78 9.3 10.3 0.024 14.3 2.4 2.1 1 1 1 2 2 2 0 Cobalt transport protein DHNA PF04038.12 gi|116754630|ref|YP_843748.1| - 6.4e-42 142.5 0.0 7e-42 142.3 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Ski2_N PF17911.1 gi|116754630|ref|YP_843748.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Ski2 N-terminal region FBPase_3 PF01950.16 gi|116754631|ref|YP_843749.1| - 1.4e-179 596.9 0.0 1.6e-179 596.7 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Clathrin PF00637.20 gi|116754632|ref|YP_843750.1| - 0.0061 16.4 0.1 0.023 14.6 0.0 2.0 2 1 1 3 3 3 1 Region in Clathrin and VPS TPR_14 PF13428.6 gi|116754632|ref|YP_843750.1| - 0.35 11.8 2.4 2.7 9.1 0.2 3.4 1 1 3 4 4 4 0 Tetratricopeptide repeat SpoIIE PF07228.12 gi|116754633|ref|YP_843751.1| - 3.4e-23 82.6 0.0 5.7e-23 81.8 0.0 1.4 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) dCache_1 PF02743.18 gi|116754633|ref|YP_843751.1| - 2.3e-15 57.1 0.1 3.7e-15 56.4 0.1 1.3 1 0 0 1 1 1 1 Cache domain Fer4 PF00037.27 gi|116754634|ref|YP_843752.1| - 0.00093 18.9 13.8 0.0017 18.1 1.8 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|116754634|ref|YP_843752.1| - 0.0031 18.2 1.5 0.074 13.8 1.5 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|116754634|ref|YP_843752.1| - 0.004 17.7 2.5 0.004 17.7 2.5 2.3 2 1 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|116754634|ref|YP_843752.1| - 0.0078 16.2 1.4 0.0078 16.2 1.4 3.6 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|116754634|ref|YP_843752.1| - 0.0092 16.0 0.7 0.0092 16.0 0.7 3.3 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116754634|ref|YP_843752.1| - 0.011 15.9 4.4 0.06 13.5 0.1 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain zf-ribbon_3 PF13248.6 gi|116754634|ref|YP_843752.1| - 0.02 14.3 3.6 0.14 11.6 0.0 2.9 2 0 0 2 2 2 0 zinc-ribbon domain Fer4_16 PF13484.6 gi|116754634|ref|YP_843752.1| - 0.087 13.8 3.9 2.9 8.9 0.6 2.7 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|116754634|ref|YP_843752.1| - 0.091 12.9 6.3 1.1 9.5 0.1 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain zf-C2H2_4 PF13894.6 gi|116754634|ref|YP_843752.1| - 0.4 11.6 0.0 0.4 11.6 0.0 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger Fer4_7 PF12838.7 gi|116754634|ref|YP_843752.1| - 0.47 11.1 10.1 17 6.1 10.1 2.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain zf-C2HC_2 PF13913.6 gi|116754634|ref|YP_843752.1| - 1.1 9.3 0.1 1.1 9.3 0.1 3.1 3 0 0 3 3 3 0 zinc-finger of a C2HC-type DZR PF12773.7 gi|116754634|ref|YP_843752.1| - 1.9 8.6 9.1 17 5.6 9.1 2.5 1 1 0 1 1 1 0 Double zinc ribbon Fer4_6 PF12837.7 gi|116754635|ref|YP_843753.1| - 9.1e-15 54.0 31.2 1.2e-08 34.7 2.2 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|116754635|ref|YP_843753.1| - 5.6e-14 51.3 32.2 9.6e-10 37.9 2.2 5.2 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|116754635|ref|YP_843753.1| - 6.7e-10 38.5 34.3 5.3e-06 26.2 2.1 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_11 PF13247.6 gi|116754635|ref|YP_843753.1| - 1e-09 38.4 10.4 1e-09 38.4 10.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754635|ref|YP_843753.1| - 1.4e-09 38.4 29.0 0.0029 18.2 4.1 4.0 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116754635|ref|YP_843753.1| - 7.2e-08 32.5 26.5 0.00082 19.5 10.6 3.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116754635|ref|YP_843753.1| - 1.7e-07 31.2 27.4 0.00091 19.3 9.3 3.5 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|116754635|ref|YP_843753.1| - 2.7e-07 30.6 34.8 0.00066 20.0 3.3 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|116754635|ref|YP_843753.1| - 1.2e-05 26.2 24.8 0.0065 17.4 4.4 4.3 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|116754635|ref|YP_843753.1| - 2.9e-05 24.1 27.6 0.019 15.1 9.3 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|116754635|ref|YP_843753.1| - 0.00041 21.0 14.3 0.0077 16.9 1.3 3.4 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|116754635|ref|YP_843753.1| - 0.0042 17.9 5.9 0.0042 17.9 5.9 4.4 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|116754635|ref|YP_843753.1| - 0.059 13.9 1.6 0.059 13.9 1.6 4.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|116754635|ref|YP_843753.1| - 0.66 10.5 32.1 3.5 8.2 9.4 4.0 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|116754635|ref|YP_843753.1| - 3.7 8.2 20.8 0.33 11.5 1.1 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Molybdopterin PF00384.22 gi|116754636|ref|YP_843754.1| - 1.5e-79 268.0 0.0 1.8e-79 267.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|116754636|ref|YP_843754.1| - 2.1e-23 82.4 0.0 4.1e-23 81.5 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|116754636|ref|YP_843754.1| - 3.5e-12 46.1 0.3 9e-12 44.8 0.3 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.6 gi|116754637|ref|YP_843755.1| - 1.5e-15 57.1 10.0 1.5e-15 57.1 10.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754637|ref|YP_843755.1| - 5e-12 46.2 27.1 2e-06 28.3 9.3 3.1 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116754637|ref|YP_843755.1| - 9.4e-12 44.9 22.8 1.8e-05 24.8 8.8 2.7 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|116754637|ref|YP_843755.1| - 9.9e-10 37.8 39.1 0.00015 21.5 2.7 5.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|116754637|ref|YP_843755.1| - 1.7e-09 37.4 37.6 0.0021 18.0 2.4 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116754637|ref|YP_843755.1| - 2.5e-09 37.1 26.6 0.00039 20.5 10.8 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116754637|ref|YP_843755.1| - 9.8e-09 36.0 21.0 0.046 14.7 1.1 4.4 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|116754637|ref|YP_843755.1| - 1.2e-08 34.5 33.4 0.012 15.6 2.4 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|116754637|ref|YP_843755.1| - 4.4e-07 29.9 32.6 0.0073 16.7 4.0 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_20 PF14691.6 gi|116754637|ref|YP_843755.1| - 0.0056 16.4 20.7 0.041 13.7 0.4 3.6 2 1 0 3 3 3 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|116754637|ref|YP_843755.1| - 0.0073 17.2 43.0 0.048 14.6 6.5 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|116754637|ref|YP_843755.1| - 0.0095 16.5 24.7 0.93 10.1 0.7 4.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754637|ref|YP_843755.1| - 0.023 14.8 32.2 0.56 10.4 12.5 3.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|116754637|ref|YP_843755.1| - 0.024 15.1 24.5 0.037 14.5 7.3 3.4 2 2 1 3 3 2 0 4Fe-4S dicluster domain Fe_dep_repr_C PF02742.15 gi|116754637|ref|YP_843755.1| - 0.12 12.5 0.1 0.25 11.4 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain DUF4033 PF13225.6 gi|116754637|ref|YP_843755.1| - 1.8 8.6 6.5 17 5.5 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4033) Prismane PF03063.20 gi|116754638|ref|YP_843756.1| - 1.9e-174 581.1 0.0 2.2e-174 580.9 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family DUF2111 PF09884.9 gi|116754639|ref|YP_843757.1| - 7.2e-33 112.5 0.9 9.4e-33 112.1 0.9 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Acetyltransf_1 PF00583.25 gi|116754640|ref|YP_843758.1| - 2.6e-17 63.1 0.1 3.4e-17 62.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|116754640|ref|YP_843758.1| - 2e-12 47.1 0.0 2.6e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|116754640|ref|YP_843758.1| - 3.8e-11 43.3 0.0 5.4e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|116754640|ref|YP_843758.1| - 4.9e-09 36.0 0.0 6.3e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 gi|116754640|ref|YP_843758.1| - 8.2e-07 29.3 0.3 1.1e-06 28.8 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|116754640|ref|YP_843758.1| - 8.4e-07 29.1 0.0 4e-05 23.7 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|116754640|ref|YP_843758.1| - 0.0046 16.7 0.1 0.0056 16.4 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_8 PF13523.6 gi|116754640|ref|YP_843758.1| - 0.0061 16.3 0.1 0.01 15.5 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|116754640|ref|YP_843758.1| - 0.0071 16.3 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.6 gi|116754640|ref|YP_843758.1| - 0.012 15.7 0.0 0.022 14.9 0.0 1.4 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|116754640|ref|YP_843758.1| - 0.028 15.1 0.1 0.072 13.8 0.0 1.9 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Lactamase_B PF00753.27 gi|116754642|ref|YP_843760.1| - 3.3e-18 66.4 6.2 1.2e-17 64.6 6.2 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|116754642|ref|YP_843760.1| - 1e-07 31.7 0.2 1.4e-07 31.3 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|116754642|ref|YP_843760.1| - 0.24 10.5 0.2 0.3 10.1 0.2 1.1 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II BofA PF07441.11 gi|116754643|ref|YP_843761.1| - 2.1e-08 34.2 19.6 2.6e-08 34.0 19.6 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Pox_A9 PF04835.12 gi|116754643|ref|YP_843761.1| - 0.13 12.4 1.2 0.13 12.4 1.2 1.9 1 1 1 2 2 2 0 A9 protein conserved region CitMHS PF03600.16 gi|116754644|ref|YP_843762.1| - 1.1e-33 116.7 30.8 1.7e-33 116.1 30.8 1.3 1 0 0 1 1 1 1 Citrate transporter DUF4405 PF14358.6 gi|116754646|ref|YP_843764.1| - 0.0036 17.8 0.1 0.0072 16.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) MG2 PF01835.19 gi|116754646|ref|YP_843764.1| - 0.0038 17.6 0.0 0.0092 16.4 0.0 1.6 1 1 1 2 2 2 1 MG2 domain GATase PF00117.28 gi|116754648|ref|YP_843766.1| - 9.3e-08 32.1 0.0 1.2e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Diphthami_syn_2 PF01902.17 gi|116754649|ref|YP_843767.1| - 4.7e-68 229.0 0.0 5.3e-68 228.8 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase CM_2 PF01817.21 gi|116754650|ref|YP_843768.1| - 4.5e-16 59.0 1.3 5.1e-16 58.8 1.3 1.0 1 0 0 1 1 1 1 Chorismate mutase type II GHMP_kinases_N PF00288.26 gi|116754651|ref|YP_843769.1| - 2.2e-11 43.8 2.8 2.2e-11 43.8 2.8 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|116754651|ref|YP_843769.1| - 4.3e-05 23.8 0.4 0.00032 21.0 0.1 2.5 3 0 0 3 3 3 1 GHMP kinases C terminal NusG_add PF18298.1 gi|116754651|ref|YP_843769.1| - 0.029 14.6 0.0 0.05 13.8 0.0 1.3 1 0 0 1 1 1 0 NusG additional domain CooT PF10133.9 gi|116754653|ref|YP_843771.1| - 2.3e-18 66.2 4.1 2.5e-18 66.1 4.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT Prefoldin_2 PF01920.20 gi|116754654|ref|YP_843772.1| - 1.4e-22 79.7 16.9 1.5e-22 79.5 16.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF4795 PF16043.5 gi|116754654|ref|YP_843772.1| - 0.022 14.4 7.7 0.033 13.8 7.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) TINF2_N PF14973.6 gi|116754654|ref|YP_843772.1| - 0.056 13.8 0.5 0.056 13.8 0.5 1.9 1 1 1 2 2 2 0 TERF1-interacting nuclear factor 2 N-terminus DUF1706 PF08020.11 gi|116754654|ref|YP_843772.1| - 0.096 12.6 5.6 0.19 11.7 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1706) FlgN PF05130.12 gi|116754654|ref|YP_843772.1| - 0.12 12.9 10.2 0.17 12.4 10.2 1.2 1 0 0 1 1 1 0 FlgN protein CinA_KH PF18146.1 gi|116754654|ref|YP_843772.1| - 0.16 12.2 3.6 0.37 11.0 0.1 2.4 2 1 0 2 2 2 0 Damage-inducible protein CinA KH domain HisKA_3 PF07730.13 gi|116754654|ref|YP_843772.1| - 0.27 11.8 8.6 22 5.6 5.0 3.0 1 1 1 2 2 2 0 Histidine kinase DUF3053 PF11254.8 gi|116754654|ref|YP_843772.1| - 0.41 10.2 11.7 2.3 7.7 11.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3053) DUF4763 PF15960.5 gi|116754654|ref|YP_843772.1| - 0.52 9.6 11.8 0.21 10.9 3.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) TPR_MLP1_2 PF07926.12 gi|116754654|ref|YP_843772.1| - 0.89 9.6 17.6 0.6 10.2 1.7 2.1 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein KfrA_N PF11740.8 gi|116754654|ref|YP_843772.1| - 1.1 10.0 10.5 0.4 11.4 4.8 2.1 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term DUF3450 PF11932.8 gi|116754654|ref|YP_843772.1| - 1.5 8.0 17.1 0.44 9.8 7.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DivIC PF04977.15 gi|116754654|ref|YP_843772.1| - 1.5 8.6 14.1 0.13 12.0 4.5 2.2 2 0 0 2 2 2 0 Septum formation initiator Seryl_tRNA_N PF02403.22 gi|116754654|ref|YP_843772.1| - 1.8 8.8 13.3 5.6 7.2 0.8 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain V_ATPase_I PF01496.19 gi|116754654|ref|YP_843772.1| - 1.9 6.3 4.5 2.5 5.9 4.5 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FlaC_arch PF05377.11 gi|116754654|ref|YP_843772.1| - 2.1 8.8 6.1 0.99 9.8 0.4 2.5 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Fib_alpha PF08702.10 gi|116754654|ref|YP_843772.1| - 4.3 7.5 9.9 3.4 7.8 0.5 2.1 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Spc24 PF08286.11 gi|116754654|ref|YP_843772.1| - 4.7 7.5 11.1 2.8 8.2 5.1 2.0 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 NBD_C PF17042.5 gi|116754654|ref|YP_843772.1| - 6.7 7.2 7.9 21 5.6 8.0 1.7 1 1 0 1 1 1 0 Nucleotide-binding C-terminal domain PilO PF04350.13 gi|116754654|ref|YP_843772.1| - 7.7 6.7 11.7 6 7.0 4.2 2.2 2 0 0 2 2 2 0 Pilus assembly protein, PilO DUF1664 PF07889.12 gi|116754654|ref|YP_843772.1| - 9.4 6.3 8.4 2 8.5 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Pcc1 PF09341.10 gi|116754655|ref|YP_843773.1| - 5.8e-09 36.0 0.1 6.4e-09 35.8 0.1 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.13 gi|116754656|ref|YP_843774.1| - 4.1e-10 39.2 8.0 5.2e-10 38.8 8.0 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|116754656|ref|YP_843774.1| - 5.6e-05 22.6 1.4 0.19 11.4 0.2 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|116754656|ref|YP_843774.1| - 0.00054 19.4 1.1 0.00067 19.1 1.1 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|116754656|ref|YP_843774.1| - 0.0014 17.9 0.4 0.0095 15.3 0.1 2.0 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|116754656|ref|YP_843774.1| - 0.0021 17.9 0.6 0.0026 17.6 0.6 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|116754656|ref|YP_843774.1| - 0.0023 17.9 0.5 0.0023 17.9 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|116754656|ref|YP_843774.1| - 0.0036 17.2 4.2 0.11 12.5 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|116754656|ref|YP_843774.1| - 0.0039 17.1 1.4 0.071 13.0 0.1 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG Anti-TRAP PF15777.5 gi|116754656|ref|YP_843774.1| - 0.0061 16.5 0.1 0.0063 16.5 0.1 1.1 1 0 0 1 1 1 1 Tryptophan RNA-binding attenuator protein inhibitory protein Sgf11 PF08209.11 gi|116754656|ref|YP_843774.1| - 0.0087 15.6 1.8 0.86 9.2 0.3 2.1 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) DZR PF12773.7 gi|116754656|ref|YP_843774.1| - 0.015 15.3 1.0 0.024 14.7 1.0 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|116754656|ref|YP_843774.1| - 0.015 15.0 2.3 0.034 13.9 2.3 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_6 PF14599.6 gi|116754656|ref|YP_843774.1| - 0.016 15.2 1.5 0.024 14.7 1.5 1.2 1 0 0 1 1 1 0 Zinc-ribbon zinc_ribbon_9 PF14369.6 gi|116754656|ref|YP_843774.1| - 0.023 14.9 1.4 0.036 14.3 1.4 1.3 1 0 0 1 1 1 0 zinc-ribbon YacG PF03884.14 gi|116754656|ref|YP_843774.1| - 0.03 14.1 0.7 0.84 9.4 0.1 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG Zn-ribbon_8 PF09723.10 gi|116754656|ref|YP_843774.1| - 0.033 14.3 5.4 0.074 13.2 5.3 1.7 1 1 0 1 1 1 0 Zinc ribbon domain DUF951 PF06107.11 gi|116754656|ref|YP_843774.1| - 0.038 13.9 3.3 0.12 12.2 0.3 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) C1_1 PF00130.22 gi|116754656|ref|YP_843774.1| - 0.039 13.8 1.3 3.8 7.5 0.2 1.7 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) CpXC PF14353.6 gi|116754656|ref|YP_843774.1| - 0.052 13.6 1.5 1 9.4 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-C2HC_2 PF13913.6 gi|116754656|ref|YP_843774.1| - 0.081 12.9 4.0 4.6 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DUF2072 PF09845.9 gi|116754656|ref|YP_843774.1| - 0.099 12.9 0.3 0.099 12.9 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zinc_ribbon_4 PF13717.6 gi|116754656|ref|YP_843774.1| - 0.15 12.0 4.6 3.7 7.6 4.6 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|116754656|ref|YP_843774.1| - 0.19 12.5 3.9 0.39 11.5 4.0 1.4 1 1 0 1 1 1 0 zinc-ribbon family DUF3268 PF11672.8 gi|116754656|ref|YP_843774.1| - 0.23 11.8 2.5 0.78 10.1 0.1 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain UPF0547 PF10571.9 gi|116754656|ref|YP_843774.1| - 0.43 10.7 6.3 3 8.0 6.3 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DiS_P_DiS PF06750.13 gi|116754656|ref|YP_843774.1| - 0.43 10.7 2.5 9.4 6.4 0.1 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_10 PF10058.9 gi|116754656|ref|YP_843774.1| - 0.44 10.3 4.8 2.7 7.8 0.2 2.4 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein Ribosomal_L37ae PF01780.19 gi|116754657|ref|YP_843775.1| - 2.3e-29 101.3 4.3 2.6e-29 101.1 4.3 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|116754657|ref|YP_843775.1| - 0.00096 19.1 3.8 0.0015 18.5 3.8 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|116754657|ref|YP_843775.1| - 0.003 17.7 0.4 0.57 10.3 0.2 2.3 2 0 0 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|116754657|ref|YP_843775.1| - 0.013 15.4 0.6 0.021 14.8 0.6 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_10 PF10058.9 gi|116754657|ref|YP_843775.1| - 0.014 15.2 0.9 0.81 9.5 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein IBR PF01485.21 gi|116754657|ref|YP_843775.1| - 0.015 15.5 0.2 0.023 14.9 0.2 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Rep_fac-A_C PF08646.10 gi|116754657|ref|YP_843775.1| - 0.038 13.8 0.2 0.044 13.5 0.2 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Elf1 PF05129.13 gi|116754657|ref|YP_843775.1| - 0.049 13.7 1.1 0.12 12.5 1.1 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like HalOD2 PF18547.1 gi|116754657|ref|YP_843775.1| - 0.05 13.5 3.7 0.15 12.0 3.7 1.8 1 1 0 1 1 1 0 Halobacterial output domain 2 UPF0547 PF10571.9 gi|116754657|ref|YP_843775.1| - 0.093 12.8 5.2 0.56 10.3 5.2 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|116754657|ref|YP_843775.1| - 0.099 12.3 2.2 3.8 7.2 0.4 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger RPA_interact_C PF14768.6 gi|116754657|ref|YP_843775.1| - 0.1 13.1 0.1 0.13 12.8 0.1 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal PhnA_Zn_Ribbon PF08274.12 gi|116754657|ref|YP_843775.1| - 0.21 11.6 2.7 1.5 8.9 2.7 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-TFIIB PF13453.6 gi|116754657|ref|YP_843775.1| - 0.23 10.8 2.7 0.69 9.3 2.7 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger Rubredoxin_2 PF18073.1 gi|116754657|ref|YP_843775.1| - 0.27 11.0 4.9 0.53 10.0 1.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_2 PF13240.6 gi|116754657|ref|YP_843775.1| - 0.35 10.6 3.1 4.4 7.2 0.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|116754657|ref|YP_843775.1| - 0.47 11.0 4.2 0.9 10.1 0.3 2.2 1 1 1 2 2 2 0 Zinc-finger double domain DUF4379 PF14311.6 gi|116754657|ref|YP_843775.1| - 0.53 10.7 5.1 0.73 10.2 0.6 2.2 1 1 0 2 2 2 0 Probable Zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|116754657|ref|YP_843775.1| - 0.55 10.2 5.4 5.5 7.0 4.5 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-Mss51 PF13824.6 gi|116754657|ref|YP_843775.1| - 0.66 10.1 2.5 2.2 8.4 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 RNase_PH PF01138.21 gi|116754658|ref|YP_843776.1| - 3.9e-26 92.1 0.0 6.1e-26 91.5 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|116754658|ref|YP_843776.1| - 2.5e-08 33.8 0.2 3.9e-08 33.2 0.2 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|116754659|ref|YP_843777.1| - 6e-35 120.6 0.0 8.3e-35 120.2 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|116754659|ref|YP_843777.1| - 8.7e-17 60.9 0.0 1.8e-16 59.9 0.0 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|116754660|ref|YP_843778.1| - 8.9e-10 38.8 0.4 2.3e-09 37.5 0.4 1.7 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|116754660|ref|YP_843778.1| - 1.9e-08 34.0 0.0 3.3e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_1 PF00013.29 gi|116754660|ref|YP_843778.1| - 3.5e-08 33.2 0.0 6.6e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|116754660|ref|YP_843778.1| - 5.3e-07 29.9 0.0 1.3e-06 28.6 0.0 1.7 1 0 0 1 1 1 1 S1 RNA binding domain KH_2 PF07650.17 gi|116754660|ref|YP_843778.1| - 8.3e-05 22.3 0.2 0.00017 21.3 0.2 1.6 1 0 0 1 1 1 1 KH domain SBDS PF01172.18 gi|116754661|ref|YP_843779.1| - 2.8e-22 78.6 0.0 4.8e-22 77.8 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|116754661|ref|YP_843779.1| - 1.6e-19 70.0 0.1 2.6e-19 69.4 0.1 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.26 gi|116754662|ref|YP_843780.1| - 2.7e-57 193.3 0.4 3.4e-57 193.0 0.4 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|116754662|ref|YP_843780.1| - 1.1e-14 53.8 0.5 3.9e-14 52.0 0.1 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|116754663|ref|YP_843781.1| - 3e-15 56.3 0.0 4.2e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.16 gi|116754664|ref|YP_843782.1| - 1.8e-36 125.6 0.0 2.2e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 CutC PF03932.14 gi|116754664|ref|YP_843782.1| - 0.0036 16.8 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 CutC family PEP-utilizers PF00391.23 gi|116754664|ref|YP_843782.1| - 0.063 13.0 0.5 17 5.2 0.1 2.7 2 2 0 2 2 2 0 PEP-utilising enzyme, mobile domain RNA_binding PF01877.17 gi|116754665|ref|YP_843783.1| - 8.9e-38 129.2 0.0 1e-37 129.0 0.0 1.0 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.17 gi|116754666|ref|YP_843784.1| - 8.9e-81 270.2 9.9 1e-80 270.0 9.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 DNA_primase_lrg PF04104.14 gi|116754667|ref|YP_843785.1| - 4.4e-08 32.8 0.1 2e-07 30.7 0.0 2.0 2 1 0 2 2 2 1 Eukaryotic and archaeal DNA primase, large subunit DUF2114 PF09887.9 gi|116754668|ref|YP_843786.1| - 2.2e-229 761.5 0.6 2.6e-229 761.3 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Radical_SAM PF04055.21 gi|116754669|ref|YP_843787.1| - 4.1e-09 37.0 0.1 1.8e-06 28.4 0.0 2.3 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_12 PF13353.6 gi|116754669|ref|YP_843787.1| - 0.00013 22.3 0.1 0.00022 21.5 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|116754669|ref|YP_843787.1| - 0.003 17.7 0.1 0.0087 16.2 0.1 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Archease PF01951.16 gi|116754670|ref|YP_843788.1| - 2.1e-42 144.7 0.3 2.3e-42 144.5 0.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.17 gi|116754671|ref|YP_843789.1| - 2.8e-164 547.2 0.0 3.2e-164 547.0 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB SpoU_methylase PF00588.19 gi|116754672|ref|YP_843790.1| - 1.1e-31 109.9 0.0 1.5e-31 109.5 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|116754672|ref|YP_843790.1| - 0.0028 17.5 0.0 0.0087 15.9 0.0 1.8 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase TPR_12 PF13424.6 gi|116754673|ref|YP_843791.1| - 3.7e-142 462.9 96.9 1.9e-15 56.9 0.4 16.0 8 4 5 16 16 16 16 Tetratricopeptide repeat TPR_1 PF00515.28 gi|116754673|ref|YP_843791.1| - 2.5e-96 311.9 43.6 2e-05 24.2 0.1 25.6 26 0 0 26 26 25 19 Tetratricopeptide repeat TPR_2 PF07719.17 gi|116754673|ref|YP_843791.1| - 6.5e-86 275.7 75.1 0.00016 21.5 0.1 26.5 27 1 0 27 27 27 19 Tetratricopeptide repeat TPR_7 PF13176.6 gi|116754673|ref|YP_843791.1| - 1.4e-76 247.0 76.3 5.9e-06 25.9 0.0 26.9 27 0 0 27 27 27 18 Tetratricopeptide repeat TPR_10 PF13374.6 gi|116754673|ref|YP_843791.1| - 3.1e-68 224.0 92.7 2.8e-05 23.8 0.1 25.3 25 0 0 25 25 25 16 Tetratricopeptide repeat SNAP PF14938.6 gi|116754673|ref|YP_843791.1| - 2.7e-53 181.2 19.3 2.8e-10 40.1 0.5 10.3 3 1 5 10 10 10 7 Soluble NSF attachment protein, SNAP TPR_MalT PF17874.1 gi|116754673|ref|YP_843791.1| - 9.3e-44 150.2 45.5 1.2e-07 31.4 0.2 10.6 2 2 7 10 10 10 10 MalT-like TPR region TPR_8 PF13181.6 gi|116754673|ref|YP_843791.1| - 4e-43 142.0 63.6 0.00088 19.3 0.1 24.5 26 1 1 27 27 24 8 Tetratricopeptide repeat TPR_14 PF13428.6 gi|116754673|ref|YP_843791.1| - 2.9e-33 111.7 76.9 0.071 14.0 0.0 24.3 17 6 8 26 26 24 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|116754673|ref|YP_843791.1| - 6.7e-33 113.1 65.8 4.7e-05 23.9 0.5 17.0 12 5 6 18 18 18 9 Tetratricopeptide repeat TPR_11 PF13414.6 gi|116754673|ref|YP_843791.1| - 6e-28 96.2 32.1 0.13 12.0 0.0 19.1 19 1 0 19 19 18 6 TPR repeat TPR_19 PF14559.6 gi|116754673|ref|YP_843791.1| - 8e-18 64.7 53.8 0.02 15.4 0.0 16.8 6 4 9 20 20 20 5 Tetratricopeptide repeat MIT PF04212.18 gi|116754673|ref|YP_843791.1| - 1.7e-17 63.2 26.7 1.6 8.8 0.0 16.6 16 3 3 19 19 16 2 MIT (microtubule interacting and transport) domain RPN7 PF10602.9 gi|116754673|ref|YP_843791.1| - 1.9e-17 63.6 23.8 0.036 13.8 0.1 11.2 4 2 4 11 11 11 6 26S proteasome subunit RPN7 TPR_6 PF13174.6 gi|116754673|ref|YP_843791.1| - 7.3e-17 60.8 61.9 2.5 8.9 0.0 24.0 26 3 1 27 27 23 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|116754673|ref|YP_843791.1| - 5.1e-16 57.8 25.0 4.5 7.9 0.0 19.7 22 1 0 22 22 20 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|116754673|ref|YP_843791.1| - 4e-09 36.7 34.6 0.1 12.7 1.1 11.1 4 4 7 12 12 12 3 Domain of Unknown Function (DUF3856) ANAPC3 PF12895.7 gi|116754673|ref|YP_843791.1| - 8.1e-09 35.6 31.3 1.2 9.5 0.2 12.5 8 4 7 15 15 14 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|116754673|ref|YP_843791.1| - 2.3e-07 30.9 58.5 0.013 15.6 0.1 14.3 12 5 5 17 17 16 5 Tetratricopeptide repeat TPR_4 PF07721.14 gi|116754673|ref|YP_843791.1| - 2e-06 27.9 57.3 0.19 12.4 0.2 18.1 22 2 2 24 24 15 3 Tetratricopeptide repeat PPR PF01535.20 gi|116754673|ref|YP_843791.1| - 2e-05 24.5 20.6 4.1 7.9 0.0 13.8 15 1 1 16 16 12 1 PPR repeat TPR_3 PF07720.12 gi|116754673|ref|YP_843791.1| - 5.2e-05 23.1 3.4 1.1 9.3 0.1 7.7 10 0 0 10 10 9 1 Tetratricopeptide repeat Foie-gras_1 PF11817.8 gi|116754673|ref|YP_843791.1| - 0.00041 20.0 23.2 0.8 9.2 0.1 9.1 9 2 2 11 11 11 2 Foie gras liver health family 1 TPR_21 PF09976.9 gi|116754673|ref|YP_843791.1| - 0.0024 17.6 27.4 3.4 7.4 0.1 9.6 5 2 5 11 11 9 1 Tetratricopeptide repeat-like domain ComR_TPR PF18710.1 gi|116754673|ref|YP_843791.1| - 0.0098 15.5 1.0 5.1 6.6 0.0 5.1 6 1 1 7 7 7 0 ComR tetratricopeptide PPR_2 PF13041.6 gi|116754673|ref|YP_843791.1| - 0.056 13.6 0.8 21 5.4 0.1 5.4 5 0 0 5 5 4 0 PPR repeat family CorA PF01544.18 gi|116754673|ref|YP_843791.1| - 0.099 11.9 5.0 0.24 10.7 0.2 3.5 4 0 0 4 4 4 0 CorA-like Mg2+ transporter protein SRP68 PF16969.5 gi|116754673|ref|YP_843791.1| - 0.12 11.4 9.3 0.93 8.4 0.0 5.5 6 1 0 7 7 7 0 RNA-binding signal recognition particle 68 Cohesin_load PF10345.9 gi|116754673|ref|YP_843791.1| - 0.12 10.7 1.9 16 3.8 0.1 3.6 2 1 1 3 3 3 0 Cohesin loading factor Het-C PF07217.11 gi|116754673|ref|YP_843791.1| - 0.17 10.4 0.1 0.3 9.6 0.1 1.3 1 0 0 1 1 1 0 Heterokaryon incompatibility protein Het-C Vta1_C PF18097.1 gi|116754673|ref|YP_843791.1| - 0.22 11.3 2.1 2.5 7.8 0.1 3.6 4 0 0 4 4 3 0 Vta1 C-terminal domain DUF4398 PF14346.6 gi|116754673|ref|YP_843791.1| - 0.73 10.5 4.9 5.1 7.8 0.2 4.3 3 1 0 3 3 2 0 Domain of unknown function (DUF4398) ANAPC5 PF12862.7 gi|116754673|ref|YP_843791.1| - 0.81 9.8 17.9 1 9.5 0.1 7.7 9 3 0 9 9 7 0 Anaphase-promoting complex subunit 5 YfiO PF13525.6 gi|116754673|ref|YP_843791.1| - 1.4 8.6 12.5 53 3.4 0.0 5.9 6 1 0 6 6 5 0 Outer membrane lipoprotein SPO22 PF08631.10 gi|116754673|ref|YP_843791.1| - 2.7 7.4 23.2 5.7 6.3 3.6 6.3 5 2 3 8 8 8 0 Meiosis protein SPO22/ZIP4 like SHNi-TPR PF10516.9 gi|116754673|ref|YP_843791.1| - 3.5 7.2 21.7 20 4.8 0.0 9.3 10 1 0 10 10 9 0 SHNi-TPR TPR_20 PF14561.6 gi|116754673|ref|YP_843791.1| - 6 7.3 11.7 0.48 10.8 0.4 5.1 6 0 0 6 6 2 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|116754673|ref|YP_843791.1| - 7.7 6.7 9.2 2.1 8.5 0.1 4.6 6 0 0 6 6 3 0 Fis1 C-terminal tetratricopeptide repeat CxxCxxCC PF03692.15 gi|116754674|ref|YP_843792.1| - 2.8e-11 43.9 0.2 8.8e-11 42.3 0.2 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain MtrH PF02007.18 gi|116754675|ref|YP_843793.1| - 3.7e-129 430.1 1.5 4.2e-129 430.0 1.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrG PF04210.13 gi|116754676|ref|YP_843794.1| - 5e-29 100.0 0.7 5.8e-29 99.7 0.7 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF2536 PF10750.9 gi|116754676|ref|YP_843794.1| - 0.013 15.3 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2536) MtrF PF09472.10 gi|116754677|ref|YP_843795.1| - 2.5e-26 90.9 0.1 2.9e-26 90.7 0.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DDDD PF10161.9 gi|116754677|ref|YP_843795.1| - 0.1 12.4 0.1 0.12 12.1 0.1 1.1 1 0 0 1 1 1 0 Putative mitochondrial precursor protein MtrA PF04208.14 gi|116754678|ref|YP_843796.1| - 2e-86 288.0 3.2 2.7e-86 287.6 3.2 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrB PF05440.12 gi|116754679|ref|YP_843797.1| - 2.6e-36 123.9 0.1 3e-36 123.7 0.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrC PF04211.13 gi|116754680|ref|YP_843798.1| - 2.2e-99 331.9 27.9 2.5e-99 331.7 27.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C Ost5 PF05251.12 gi|116754680|ref|YP_843798.1| - 0.082 13.2 0.2 0.082 13.2 0.2 4.0 3 2 1 4 4 4 0 Oligosaccharyltransferase subunit 5 DUF418 PF04235.12 gi|116754680|ref|YP_843798.1| - 3.1 7.7 12.9 0.073 13.0 2.3 3.0 1 1 1 3 3 3 0 Protein of unknown function (DUF418) MtrD PF04207.12 gi|116754681|ref|YP_843799.1| - 1.3e-92 309.5 22.8 1.5e-92 309.2 22.8 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D EcsB PF05975.12 gi|116754681|ref|YP_843799.1| - 0.027 13.3 0.2 0.05 12.4 0.2 1.4 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB MtrE PF04206.12 gi|116754682|ref|YP_843800.1| - 3e-129 430.1 9.1 3.5e-129 429.9 9.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E GtrA PF04138.14 gi|116754682|ref|YP_843800.1| - 1.3 9.3 9.6 0.18 12.1 4.9 2.0 2 0 0 2 2 2 0 GtrA-like protein CarS-like PF01864.17 gi|116754683|ref|YP_843801.1| - 2e-53 180.9 4.8 2.2e-53 180.8 4.8 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|116754683|ref|YP_843801.1| - 7.3e-07 29.2 3.4 7.3e-07 29.2 3.4 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family DUF92 PF01940.16 gi|116754683|ref|YP_843801.1| - 0.091 12.2 2.8 0.15 11.5 2.8 1.3 1 0 0 1 1 1 0 Integral membrane protein DUF92 Nitroreductase PF00881.24 gi|116754684|ref|YP_843802.1| - 2.2e-24 86.4 2.2 1.3e-12 48.1 0.5 2.4 2 1 1 3 3 3 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|116754684|ref|YP_843802.1| - 1e-08 35.1 0.0 8e-08 32.1 0.0 2.7 1 1 0 1 1 1 1 Putative TM nitroreductase DUF5547 PF17701.1 gi|116754684|ref|YP_843802.1| - 0.022 14.6 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5547) cobW PF02492.19 gi|116754685|ref|YP_843803.1| - 0.00024 20.8 0.0 0.00051 19.7 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|116754685|ref|YP_843803.1| - 0.02 14.1 0.0 0.042 13.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin HTH_3 PF01381.22 gi|116754686|ref|YP_843804.1| - 7.8e-12 45.1 0.0 2.2e-11 43.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|116754686|ref|YP_843804.1| - 7.5e-08 32.3 0.0 1.7e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|116754686|ref|YP_843804.1| - 1.8e-06 28.2 0.0 4.1e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|116754686|ref|YP_843804.1| - 0.02 15.0 0.0 0.047 13.8 0.0 1.6 2 0 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_26 PF13443.6 gi|116754686|ref|YP_843804.1| - 0.044 14.2 0.0 0.13 12.8 0.0 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|116754686|ref|YP_843804.1| - 0.12 12.3 0.1 0.72 9.8 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain ACP_syn_III_C PF08541.10 gi|116754687|ref|YP_843805.1| - 2.2e-10 40.5 0.0 4.8e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|116754687|ref|YP_843805.1| - 1.6e-06 27.9 0.0 3.8e-05 23.5 0.0 2.3 2 1 1 3 3 3 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|116754687|ref|YP_843805.1| - 5e-05 22.8 0.3 7.6e-05 22.2 0.3 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 gi|116754687|ref|YP_843805.1| - 0.0097 15.8 0.1 0.014 15.3 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.10 gi|116754687|ref|YP_843805.1| - 0.23 11.3 6.5 0.048 13.5 2.8 1.8 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|116754688|ref|YP_843806.1| - 1e-28 100.5 0.1 1.5e-28 99.9 0.1 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|116754688|ref|YP_843806.1| - 7.3e-12 45.0 1.3 1.6e-11 44.0 0.5 2.0 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|116754688|ref|YP_843806.1| - 3e-06 27.0 3.3 3e-06 27.0 3.3 3.2 3 1 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|116754688|ref|YP_843806.1| - 0.048 13.5 2.1 9.1 6.2 0.0 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|116754688|ref|YP_843806.1| - 0.078 13.0 1.1 2.9 7.9 0.0 2.8 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|116754689|ref|YP_843807.1| - 2.8e-17 62.4 0.0 4.4e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|116754689|ref|YP_843807.1| - 2.6e-12 46.4 2.0 2.6e-12 46.4 2.0 1.9 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.12 gi|116754689|ref|YP_843807.1| - 0.21 11.4 0.1 0.27 11.1 0.1 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DNA_gyraseB PF00204.25 gi|116754690|ref|YP_843808.1| - 1.8e-62 209.9 0.1 2.9e-62 209.2 0.1 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|116754690|ref|YP_843808.1| - 3.8e-31 107.1 0.1 7.9e-31 106.0 0.1 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|116754690|ref|YP_843808.1| - 6.1e-23 81.5 0.1 1.6e-22 80.1 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|116754690|ref|YP_843808.1| - 1.3e-19 70.3 0.0 4e-19 68.7 0.0 1.9 2 0 0 2 2 2 1 Toprim domain HATPase_c_3 PF13589.6 gi|116754690|ref|YP_843808.1| - 0.0016 18.3 0.3 0.0038 17.0 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.20 gi|116754691|ref|YP_843809.1| - 2e-163 544.2 0.0 2.6e-163 543.9 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|116754691|ref|YP_843809.1| - 8.3e-73 239.7 19.2 2.3e-16 59.0 0.2 7.0 7 0 0 7 7 7 6 DNA gyrase C-terminal domain, beta-propeller OrfB_Zn_ribbon PF07282.11 gi|116754692|ref|YP_843810.1| - 6.8e-18 64.4 1.3 6.8e-18 64.4 1.3 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|116754692|ref|YP_843810.1| - 2.4e-14 53.6 1.5 3.5e-14 53.1 1.5 1.2 1 0 0 1 1 1 1 Probable transposase HypA PF01155.19 gi|116754692|ref|YP_843810.1| - 0.015 15.3 1.6 0.027 14.5 1.6 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|116754692|ref|YP_843810.1| - 0.022 14.5 0.8 0.14 11.9 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.21 gi|116754692|ref|YP_843810.1| - 0.024 14.9 4.7 0.06 13.6 4.7 1.7 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Ntox28 PF15605.6 gi|116754692|ref|YP_843810.1| - 0.054 13.7 0.8 0.11 12.7 0.8 1.5 1 0 0 1 1 1 0 Bacterial toxin 28 C1_2 PF03107.16 gi|116754692|ref|YP_843810.1| - 0.06 13.7 5.2 0.18 12.1 5.2 1.9 1 0 0 1 1 1 0 C1 domain TF_Zn_Ribbon PF08271.12 gi|116754692|ref|YP_843810.1| - 0.098 12.2 0.2 0.098 12.2 0.2 2.6 3 0 0 3 3 3 0 TFIIB zinc-binding ESM4 PF15952.5 gi|116754692|ref|YP_843810.1| - 0.4 11.1 4.1 0.64 10.4 4.1 1.4 1 1 0 1 1 1 0 Enhancer of split M4 family VIT1 PF01988.19 gi|116754693|ref|YP_843811.1| - 1e-10 41.9 27.7 9.1e-07 29.0 10.3 2.0 1 1 1 2 2 2 2 VIT family IncD PF17628.2 gi|116754693|ref|YP_843811.1| - 0.073 12.9 0.1 0.073 12.9 0.1 2.6 1 1 2 3 3 3 0 Inclusion membrane protein D DUF3792 PF12670.7 gi|116754693|ref|YP_843811.1| - 3 8.0 22.8 0.05 13.8 11.6 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3792) DNA_pol_B PF00136.21 gi|116754694|ref|YP_843812.1| - 1.5e-104 350.2 0.0 4.4e-104 348.8 0.0 1.7 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|116754694|ref|YP_843812.1| - 1.3e-47 162.6 0.0 2.5e-46 158.4 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|116754694|ref|YP_843812.1| - 1.3e-05 25.0 0.0 2.3e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|116754694|ref|YP_843812.1| - 0.044 12.6 0.1 0.19 10.6 0.0 1.8 2 0 0 2 2 2 0 DNA polymerase type B, organellar and viral RNase_H_2 PF13482.6 gi|116754694|ref|YP_843812.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 RNase_H superfamily Nuc_rec_co-act PF08815.10 gi|116754694|ref|YP_843812.1| - 0.15 12.0 0.0 0.81 9.6 0.0 2.2 2 0 0 2 2 2 0 Nuclear receptor coactivator GTP_EFTU_D2 PF03144.25 gi|116754695|ref|YP_843813.1| - 7.6e-11 42.3 0.2 1.4e-10 41.4 0.2 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|116754695|ref|YP_843813.1| - 0.0048 16.8 0.0 0.0082 16.0 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu domain 4 3-dmu-9_3-mt PF06983.13 gi|116754695|ref|YP_843813.1| - 0.03 14.9 0.0 0.059 13.9 0.0 1.4 1 0 0 1 1 1 0 3-demethylubiquinone-9 3-methyltransferase Phosphorylase PF00343.20 gi|116754696|ref|YP_843814.1| - 4.3e-35 121.2 0.0 7.1e-29 100.6 0.0 3.2 3 1 0 3 3 3 2 Carbohydrate phosphorylase DUF3417 PF11897.8 gi|116754696|ref|YP_843814.1| - 7.3e-35 119.7 0.2 2.6e-34 118.0 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) BcrAD_BadFG PF01869.20 gi|116754697|ref|YP_843815.1| - 0.091 12.2 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family FhuF_C PF11575.8 gi|116754697|ref|YP_843815.1| - 7.7 6.5 8.8 34 4.5 0.2 3.7 3 0 0 3 3 3 0 FhuF 2Fe-2S C-terminal domain YcaO PF02624.16 gi|116754698|ref|YP_843816.1| - 1.5e-94 316.9 2.0 1.7e-94 316.7 1.3 1.4 2 0 0 2 2 2 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding TfuA PF07812.12 gi|116754699|ref|YP_843817.1| - 4.2e-46 155.6 0.0 6.3e-46 155.0 0.0 1.3 1 0 0 1 1 1 1 TfuA-like protein AdoMet_Synthase PF01941.19 gi|116754700|ref|YP_843818.1| - 4.4e-118 394.5 0.0 5.1e-118 394.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Nup35_RRM_2 PF14605.6 gi|116754700|ref|YP_843818.1| - 0.0058 16.6 0.0 0.021 14.8 0.0 1.9 2 0 0 2 2 2 1 Nup53/35/40-type RNA recognition motif AMP-binding_C_2 PF14535.6 gi|116754700|ref|YP_843818.1| - 0.021 15.1 0.5 0.078 13.3 0.3 1.9 2 0 0 2 2 2 0 AMP-binding enzyme C-terminal domain S-AdoMet_synt_N PF00438.20 gi|116754700|ref|YP_843818.1| - 0.11 13.2 0.3 0.54 11.0 0.0 2.2 3 0 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain Hydantoinase_A PF01968.18 gi|116754701|ref|YP_843819.1| - 1e-48 166.1 4.1 5e-47 160.5 0.7 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|116754701|ref|YP_843819.1| - 1.1e-24 87.1 6.4 2e-21 76.5 4.0 3.3 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.6 gi|116754701|ref|YP_843819.1| - 8.2e-06 26.2 1.3 0.12 12.8 0.0 3.2 2 1 0 2 2 2 2 Cell division protein FtsA BcrAD_BadFG PF01869.20 gi|116754701|ref|YP_843819.1| - 2.4e-05 23.9 2.0 0.0038 16.8 0.8 3.2 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.6 gi|116754701|ref|YP_843819.1| - 3.7e-05 22.5 2.5 0.0051 15.5 0.1 2.3 2 0 0 2 2 2 2 MutL protein Ppx-GppA PF02541.16 gi|116754701|ref|YP_843819.1| - 0.0059 16.1 1.3 0.089 12.2 0.1 2.4 2 0 0 2 2 2 1 Ppx/GppA phosphatase family EutA PF06277.11 gi|116754701|ref|YP_843819.1| - 0.025 13.5 1.5 1.9 7.2 0.1 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutA StbA PF06406.11 gi|116754701|ref|YP_843819.1| - 0.43 9.8 1.3 1.2 8.3 0.1 2.0 2 0 0 2 2 2 0 StbA protein MreB_Mbl PF06723.13 gi|116754701|ref|YP_843819.1| - 0.84 8.4 5.8 0.16 10.7 0.2 2.3 3 0 0 3 3 3 0 MreB/Mbl protein Hist_deacetyl PF00850.19 gi|116754702|ref|YP_843820.1| - 3.4e-62 210.7 0.0 5e-62 210.1 0.0 1.3 1 0 0 1 1 1 1 Histone deacetylase domain CdvA PF18822.1 gi|116754703|ref|YP_843821.1| - 0.1 12.4 0.2 0.23 11.3 0.0 1.6 2 0 0 2 2 2 0 CdvA-like coiled-coil domain AIRS_C PF02769.22 gi|116754704|ref|YP_843822.1| - 1.2e-15 58.0 3.6 2.7e-15 56.9 3.6 1.7 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|116754704|ref|YP_843822.1| - 3.3e-09 37.3 1.2 8.2e-09 36.0 1.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF5518 PF17647.1 gi|116754705|ref|YP_843823.1| - 0.096 12.8 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5518) PTS_2-RNA PF01885.16 gi|116754706|ref|YP_843824.1| - 6.3e-24 85.0 0.0 7.9e-24 84.7 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family MarC PF01914.17 gi|116754707|ref|YP_843825.1| - 2.8e-59 199.9 11.4 3.2e-59 199.8 11.4 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.16 gi|116754707|ref|YP_843825.1| - 0.00059 19.6 5.9 0.0018 18.0 5.3 2.1 1 1 0 1 1 1 1 Integral membrane protein TerC family N_formyltrans_C PF18216.1 gi|116754707|ref|YP_843825.1| - 0.15 11.7 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 N-formyltransferase dimerization C-terminal domain Pyr_redox_2 PF07992.14 gi|116754708|ref|YP_843826.1| - 1.3e-17 64.0 0.2 3.9e-07 29.6 0.0 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|116754708|ref|YP_843826.1| - 4e-15 55.8 2.5 1.2e-07 31.2 0.8 3.1 3 1 0 3 3 3 2 FAD binding domain GIDA PF01134.22 gi|116754708|ref|YP_843826.1| - 6.6e-12 45.2 1.2 0.00068 18.8 0.0 3.2 3 0 0 3 3 3 3 Glucose inhibited division protein A HI0933_like PF03486.14 gi|116754708|ref|YP_843826.1| - 1.2e-11 44.0 0.1 1.9e-07 30.2 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|116754708|ref|YP_843826.1| - 8.7e-09 35.4 0.2 9.9e-07 28.7 0.0 2.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|116754708|ref|YP_843826.1| - 6.6e-08 32.2 0.1 1e-07 31.5 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|116754708|ref|YP_843826.1| - 2.8e-06 27.5 0.0 1.3e-05 25.3 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|116754708|ref|YP_843826.1| - 2.4e-05 23.9 0.9 0.00011 21.8 1.2 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|116754708|ref|YP_843826.1| - 9.1e-05 22.9 0.1 0.021 15.4 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|116754708|ref|YP_843826.1| - 0.00038 19.8 0.1 0.00062 19.1 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|116754708|ref|YP_843826.1| - 0.00055 19.1 0.1 0.001 18.2 0.1 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.17 gi|116754708|ref|YP_843826.1| - 0.0047 16.2 0.2 0.0095 15.2 0.2 1.5 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|116754708|ref|YP_843826.1| - 0.086 12.1 0.1 0.61 9.3 0.1 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain SPOUT_MTase PF02590.17 gi|116754709|ref|YP_843827.1| - 7.5e-46 155.9 0.0 8.7e-46 155.7 0.0 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase AMP-binding PF00501.28 gi|116754710|ref|YP_843828.1| - 2e-90 303.4 0.0 2.4e-90 303.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|116754710|ref|YP_843828.1| - 3.2e-26 92.1 0.1 5.8e-25 88.1 0.1 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|116754710|ref|YP_843828.1| - 8.4e-15 54.4 4.8 8.4e-15 54.4 4.8 2.4 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus DUF1699 PF08004.11 gi|116754711|ref|YP_843829.1| - 1.7e-59 199.2 0.3 1.9e-59 199.0 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) EnY2 PF10163.9 gi|116754711|ref|YP_843829.1| - 0.033 14.6 0.1 2.8 8.4 0.0 2.2 2 0 0 2 2 2 0 Transcription factor e(y)2 HTH_38 PF13936.6 gi|116754711|ref|YP_843829.1| - 0.12 12.2 0.0 0.44 10.3 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain 2TM PF13239.6 gi|116754712|ref|YP_843830.1| - 9.7e-11 41.8 1.0 1.1e-10 41.6 1.0 1.1 1 0 0 1 1 1 1 2TM domain CAAD PF14159.6 gi|116754712|ref|YP_843830.1| - 0.022 14.6 0.3 0.032 14.1 0.3 1.3 1 0 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase AhpC-TSA PF00578.21 gi|116754713|ref|YP_843831.1| - 1.1e-29 102.8 0.0 1.8e-29 102.1 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|116754713|ref|YP_843831.1| - 2.3e-14 52.9 0.2 4e-14 52.2 0.2 1.3 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|116754713|ref|YP_843831.1| - 9.6e-11 41.6 0.0 1.3e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Redoxin Fer4_7 PF12838.7 gi|116754714|ref|YP_843832.1| - 4.1e-05 24.1 7.3 0.022 15.3 0.3 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116754714|ref|YP_843832.1| - 7.1e-05 22.7 12.3 0.0012 18.8 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|116754714|ref|YP_843832.1| - 0.00065 19.6 12.5 0.0063 16.6 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116754714|ref|YP_843832.1| - 0.0019 18.3 11.4 0.0033 17.5 11.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754714|ref|YP_843832.1| - 0.011 15.9 12.2 0.029 14.5 12.2 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|116754714|ref|YP_843832.1| - 0.012 15.4 3.4 0.012 15.4 3.4 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|116754714|ref|YP_843832.1| - 0.017 15.7 0.9 0.017 15.7 0.9 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_10 PF13237.6 gi|116754714|ref|YP_843832.1| - 0.055 13.6 13.5 2 8.6 2.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain TauE PF01925.19 gi|116754715|ref|YP_843833.1| - 2.5e-43 148.4 45.0 2.5e-43 148.4 45.0 1.7 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE Ribosomal_60s PF00428.19 gi|116754716|ref|YP_843834.1| - 2.1e-19 69.9 17.0 2.4e-19 69.7 17.0 1.0 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|116754716|ref|YP_843834.1| - 0.0017 18.5 0.5 0.0024 18.1 0.5 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain DUF1631 PF07793.11 gi|116754716|ref|YP_843834.1| - 0.17 10.3 3.3 0.2 10.1 3.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) DSBA PF01323.20 gi|116754716|ref|YP_843834.1| - 0.21 11.4 3.5 6.7 6.4 0.1 2.0 1 1 1 2 2 2 0 DSBA-like thioredoxin domain RL10P_insert PF17777.1 gi|116754717|ref|YP_843835.1| - 1.5e-19 69.7 0.2 2.7e-19 69.0 0.2 1.3 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|116754717|ref|YP_843835.1| - 5.1e-18 65.1 0.3 1.2e-17 63.9 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.19 gi|116754717|ref|YP_843835.1| - 0.086 13.4 7.9 0.28 11.8 7.9 1.9 1 1 0 1 1 1 0 60s Acidic ribosomal protein FliT PF05400.13 gi|116754717|ref|YP_843835.1| - 0.26 12.1 1.9 0.48 11.3 0.2 2.1 2 0 0 2 2 2 0 Flagellar protein FliT Ribosomal_L1 PF00687.21 gi|116754718|ref|YP_843836.1| - 7.4e-48 163.0 0.0 1.3e-47 162.2 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.19 gi|116754719|ref|YP_843837.1| - 1.4e-21 76.7 1.4 2e-21 76.3 0.3 1.7 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|116754719|ref|YP_843837.1| - 6.2e-21 74.0 0.8 1.1e-20 73.2 0.8 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Spt5-NGN PF03439.13 gi|116754720|ref|YP_843838.1| - 3.2e-24 84.6 0.3 4.9e-24 84.0 0.3 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|116754720|ref|YP_843838.1| - 1.3e-07 31.4 0.5 2.5e-05 24.0 0.1 2.4 2 0 0 2 2 2 2 KOW motif Glyco_hydro_65C PF03633.15 gi|116754720|ref|YP_843838.1| - 0.014 15.2 0.3 0.026 14.4 0.3 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain Cys_rich_KTR PF14205.6 gi|116754721|ref|YP_843839.1| - 0.00033 20.4 1.4 0.0098 15.7 0.3 2.2 2 0 0 2 2 2 1 Cysteine-rich KTR zf-RING_7 PF02591.15 gi|116754721|ref|YP_843839.1| - 0.0044 17.2 0.3 3.7 7.8 0.1 2.3 2 0 0 2 2 2 2 C4-type zinc ribbon domain RecR PF02132.15 gi|116754721|ref|YP_843839.1| - 0.0055 16.3 0.5 1.1 8.9 0.0 2.4 2 0 0 2 2 2 1 RecR protein zinc_ribbon_2 PF13240.6 gi|116754721|ref|YP_843839.1| - 0.0078 15.9 5.5 0.053 13.3 1.6 2.4 2 0 0 2 2 2 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|116754721|ref|YP_843839.1| - 0.019 14.9 3.5 0.12 12.3 0.9 2.5 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|116754721|ref|YP_843839.1| - 0.019 14.3 4.3 0.57 9.7 0.6 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.7 gi|116754721|ref|YP_843839.1| - 0.021 14.7 1.1 3.2 7.7 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) zf-NADH-PPase PF09297.11 gi|116754721|ref|YP_843839.1| - 0.026 14.2 3.4 0.45 10.2 0.4 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-3CxxC_2 PF17180.4 gi|116754721|ref|YP_843839.1| - 0.029 15.1 1.3 5.5 7.8 0.1 2.3 2 0 0 2 2 2 0 Zinc-binding domain TniQ PF06527.11 gi|116754721|ref|YP_843839.1| - 0.039 14.7 2.2 1.7 9.4 0.3 2.2 1 1 1 2 2 2 0 TniQ zinc_ribbon_9 PF14369.6 gi|116754721|ref|YP_843839.1| - 0.052 13.8 1.7 5.2 7.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon Terminase_GpA PF05876.12 gi|116754721|ref|YP_843839.1| - 0.074 11.6 0.8 0.078 11.5 0.8 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) NOB1_Zn_bind PF08772.11 gi|116754721|ref|YP_843839.1| - 0.1 12.8 5.1 0.13 12.5 0.6 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS1595 PF12760.7 gi|116754721|ref|YP_843839.1| - 0.25 11.4 4.9 2 8.5 4.9 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|116754721|ref|YP_843839.1| - 0.43 10.2 4.0 8.9 6.0 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-TFIIB PF13453.6 gi|116754721|ref|YP_843839.1| - 1.3 8.4 7.7 23 4.4 7.7 2.3 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-IS66 PF13005.7 gi|116754721|ref|YP_843839.1| - 5.6 7.4 7.9 49 4.4 7.9 2.2 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Hist_deacetyl PF00850.19 gi|116754722|ref|YP_843840.1| - 9.6e-75 251.9 0.0 1.2e-74 251.5 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain TRM PF02005.16 gi|116754723|ref|YP_843841.1| - 5.4e-105 351.6 0.0 6.6e-105 351.4 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|116754723|ref|YP_843841.1| - 7.2e-05 22.6 0.0 9.9e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|116754723|ref|YP_843841.1| - 0.072 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|116754723|ref|YP_843841.1| - 0.091 13.5 0.0 0.25 12.0 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|116754723|ref|YP_843841.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF3147 PF11345.8 gi|116754724|ref|YP_843842.1| - 0.0064 16.9 11.2 0.0078 16.6 11.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3147) Acyl_transf_3 PF01757.22 gi|116754724|ref|YP_843842.1| - 0.16 11.0 11.6 0.18 10.9 10.4 1.6 1 1 0 1 1 1 0 Acyltransferase family DUF4229 PF14012.6 gi|116754724|ref|YP_843842.1| - 2.8 8.1 14.2 2 8.5 5.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4229) F420_oxidored PF03807.17 gi|116754725|ref|YP_843843.1| - 1.2e-13 51.4 0.0 1.9e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.17 gi|116754725|ref|YP_843843.1| - 0.1 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|116754725|ref|YP_843843.1| - 0.18 12.1 0.0 0.29 11.4 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Methyltransf_31 PF13847.6 gi|116754726|ref|YP_843844.1| - 3.7e-36 124.2 0.0 6.2e-36 123.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116754726|ref|YP_843844.1| - 1.2e-24 86.8 0.5 7.1e-24 84.3 0.0 2.4 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116754726|ref|YP_843844.1| - 3.6e-24 85.3 0.7 1.6e-23 83.3 0.0 2.4 3 0 0 3 3 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|116754726|ref|YP_843844.1| - 6.8e-20 71.4 0.0 1.2e-19 70.5 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|116754726|ref|YP_843844.1| - 2.1e-13 50.4 0.0 5.2e-13 49.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|116754726|ref|YP_843844.1| - 1.2e-12 48.4 0.0 3.8e-12 46.8 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain PCMT PF01135.19 gi|116754726|ref|YP_843844.1| - 5.1e-12 46.0 0.0 8.4e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|116754726|ref|YP_843844.1| - 5e-08 32.7 0.0 7.1e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|116754726|ref|YP_843844.1| - 5.8e-06 26.0 0.0 1.1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|116754726|ref|YP_843844.1| - 1.8e-05 24.2 0.0 2.4e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|116754726|ref|YP_843844.1| - 2.7e-05 24.1 0.0 5.5e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Hypothetical methyltransferase UPF0020 PF01170.18 gi|116754726|ref|YP_843844.1| - 4.3e-05 23.3 0.0 8.2e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 gi|116754726|ref|YP_843844.1| - 0.00023 21.2 0.0 0.00047 20.2 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|116754726|ref|YP_843844.1| - 0.014 14.8 0.0 0.032 13.7 0.0 1.7 1 1 0 1 1 1 0 Putative methyltransferase GCD14 PF08704.10 gi|116754726|ref|YP_843844.1| - 0.017 14.8 0.0 0.052 13.2 0.0 1.7 2 0 0 2 2 2 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_3 PF01596.17 gi|116754726|ref|YP_843844.1| - 0.029 13.6 0.0 0.039 13.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Fibrillarin PF01269.17 gi|116754726|ref|YP_843844.1| - 0.071 12.2 0.0 0.17 11.0 0.0 1.5 2 0 0 2 2 2 0 Fibrillarin NNMT_PNMT_TEMT PF01234.17 gi|116754726|ref|YP_843844.1| - 0.14 11.3 0.0 1.1 8.3 0.0 2.0 1 1 1 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_PK PF05891.12 gi|116754726|ref|YP_843844.1| - 0.15 11.6 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase FtsJ PF01728.19 gi|116754726|ref|YP_843844.1| - 0.15 12.1 0.0 0.51 10.4 0.0 1.8 1 1 0 1 1 1 0 FtsJ-like methyltransferase His_biosynth PF00977.21 gi|116754727|ref|YP_843845.1| - 6.8e-79 264.5 0.3 7.8e-79 264.3 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|116754727|ref|YP_843845.1| - 4.3e-09 36.2 2.1 6.2e-05 22.5 0.3 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|116754727|ref|YP_843845.1| - 2.9e-08 33.3 1.8 0.00063 19.1 0.4 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|116754727|ref|YP_843845.1| - 4.7e-08 32.5 0.1 2.1e-05 23.8 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 gi|116754727|ref|YP_843845.1| - 1.7e-05 24.2 0.2 0.084 12.2 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase IMPDH PF00478.25 gi|116754727|ref|YP_843845.1| - 0.0001 21.4 1.5 0.09 11.8 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|116754727|ref|YP_843845.1| - 0.0007 18.9 0.6 0.22 10.7 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|116754727|ref|YP_843845.1| - 0.0087 15.5 0.7 0.13 11.7 0.1 2.5 3 0 0 3 3 3 1 Glycerol-3-phosphate responsive antiterminator TRAM PF01938.20 gi|116754728|ref|YP_843846.1| - 2.3e-14 53.1 0.8 2.8e-14 52.8 0.8 1.1 1 0 0 1 1 1 1 TRAM domain DFP PF04127.15 gi|116754729|ref|YP_843847.1| - 4.4e-49 166.9 0.1 3e-48 164.1 0.0 2.0 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|116754729|ref|YP_843847.1| - 1.8e-39 135.0 0.4 2.9e-39 134.4 0.4 1.3 1 0 0 1 1 1 1 Flavoprotein Glyco_transf_4 PF13439.6 gi|116754729|ref|YP_843847.1| - 0.014 15.4 0.7 3.6 7.6 0.1 3.2 4 0 0 4 4 4 0 Glycosyltransferase Family 4 GHMP_kinases_N PF00288.26 gi|116754730|ref|YP_843848.1| - 1.5e-07 31.6 1.8 3.4e-07 30.4 1.8 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|116754730|ref|YP_843848.1| - 0.066 13.6 0.1 0.066 13.6 0.1 2.8 2 1 1 3 3 3 0 GHMP kinases C terminal PPS_PS PF02006.16 gi|116754731|ref|YP_843849.1| - 3.2e-74 248.3 0.1 4.1e-74 247.9 0.1 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DUF773 PF05600.12 gi|116754731|ref|YP_843849.1| - 0.14 10.8 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 CDK5 regulatory subunit-associated protein 3 DUF2583 PF10762.9 gi|116754732|ref|YP_843850.1| - 0.16 12.4 2.5 0.18 12.2 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2583) SepF PF04472.12 gi|116754733|ref|YP_843851.1| - 4.9e-12 46.0 0.3 6.3e-12 45.6 0.3 1.2 1 0 0 1 1 1 1 Cell division protein SepF zf-ZPR1 PF03367.13 gi|116754734|ref|YP_843852.1| - 1.9e-35 122.1 0.0 2.3e-35 121.8 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain AtuA PF07287.11 gi|116754734|ref|YP_843852.1| - 0.008 14.9 0.0 0.012 14.4 0.0 1.2 1 0 0 1 1 1 1 Acyclic terpene utilisation family protein AtuA UPF0052 PF01933.18 gi|116754735|ref|YP_843853.1| - 9.1e-46 156.4 0.0 1.1e-45 156.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 DHHA1 PF02272.19 gi|116754737|ref|YP_843855.1| - 4.9e-15 56.2 0.2 8.2e-15 55.4 0.2 1.4 1 0 0 1 1 1 1 DHHA1 domain SelA PF03841.13 gi|116754737|ref|YP_843855.1| - 0.047 12.7 0.0 0.83 8.6 0.0 2.2 2 0 0 2 2 2 0 L-seryl-tRNA selenium transferase DHH PF01368.20 gi|116754737|ref|YP_843855.1| - 0.048 13.9 0.1 0.097 12.9 0.1 1.5 1 0 0 1 1 1 0 DHH family NTR PF01759.21 gi|116754739|ref|YP_843857.1| - 0.004 16.9 0.0 3.3 7.6 0.0 2.9 2 1 0 2 2 2 2 UNC-6/NTR/C345C module tRNA_anti-codon PF01336.25 gi|116754739|ref|YP_843857.1| - 0.0045 16.9 0.2 3.8 7.6 0.0 2.9 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain RMI1_C PF16099.5 gi|116754739|ref|YP_843857.1| - 0.0058 16.5 0.1 0.013 15.4 0.1 1.5 1 0 0 1 1 1 1 Recq-mediated genome instability protein 1, C-terminal OB-fold Arginosuc_synth PF00764.19 gi|116754741|ref|YP_843859.1| - 1.4e-164 548.0 0.0 1.6e-164 547.8 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.17 gi|116754741|ref|YP_843859.1| - 0.03 13.4 0.0 0.05 12.7 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Diphthami_syn_2 PF01902.17 gi|116754741|ref|YP_843859.1| - 0.17 11.3 0.1 0.44 10.0 0.0 1.6 2 0 0 2 2 2 0 Diphthamide synthase HTH_3 PF01381.22 gi|116754742|ref|YP_843860.1| - 7.4e-12 45.1 0.8 2.4e-11 43.5 0.6 2.0 2 0 0 2 2 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|116754742|ref|YP_843860.1| - 5.9e-09 35.8 2.9 5.9e-09 35.8 0.4 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|116754742|ref|YP_843860.1| - 1.6e-06 28.0 0.1 7.3e-06 25.8 0.1 2.1 2 0 0 2 2 2 1 HTH domain HTH_31 PF13560.6 gi|116754742|ref|YP_843860.1| - 3.3e-06 27.3 1.1 1.5e-05 25.3 0.1 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|116754742|ref|YP_843860.1| - 7.3e-05 22.4 0.0 0.00026 20.7 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain MerR PF00376.23 gi|116754742|ref|YP_843860.1| - 0.00053 19.7 0.3 0.0058 16.4 0.1 2.6 2 0 0 2 2 2 1 MerR family regulatory protein HTH_26 PF13443.6 gi|116754742|ref|YP_843860.1| - 0.0011 19.3 0.1 0.0033 17.8 0.1 1.9 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_DeoR PF08220.12 gi|116754742|ref|YP_843860.1| - 0.0015 18.2 0.0 0.0041 16.8 0.0 1.8 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|116754742|ref|YP_843860.1| - 0.0018 17.8 1.7 0.0094 15.5 0.5 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|116754742|ref|YP_843860.1| - 0.0028 17.2 0.4 0.0081 15.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|116754742|ref|YP_843860.1| - 0.0037 17.0 0.2 0.012 15.4 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|116754742|ref|YP_843860.1| - 0.004 17.2 0.1 0.011 15.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_20 PF12840.7 gi|116754742|ref|YP_843860.1| - 0.0044 17.0 0.2 0.087 12.9 0.0 2.9 4 0 0 4 4 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|116754742|ref|YP_843860.1| - 0.0068 16.5 0.1 0.018 15.2 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|116754742|ref|YP_843860.1| - 0.014 15.3 0.0 0.58 10.2 0.0 2.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_25 PF13413.6 gi|116754742|ref|YP_843860.1| - 0.018 14.9 0.1 0.053 13.4 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|116754742|ref|YP_843860.1| - 0.021 14.6 0.0 0.051 13.4 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain MerR_1 PF13411.6 gi|116754742|ref|YP_843860.1| - 0.028 14.5 0.0 0.087 12.9 0.0 1.9 1 0 0 1 1 1 0 MerR HTH family regulatory protein MarR_2 PF12802.7 gi|116754742|ref|YP_843860.1| - 0.046 13.6 0.2 0.28 11.1 0.0 2.4 3 0 0 3 3 3 0 MarR family HTH_AsnC-type PF13404.6 gi|116754742|ref|YP_843860.1| - 0.047 13.5 0.1 0.11 12.3 0.1 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|116754742|ref|YP_843860.1| - 0.054 13.5 0.0 0.16 12.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix NUMOD1 PF07453.13 gi|116754742|ref|YP_843860.1| - 0.11 12.7 0.0 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain PRK PF00485.18 gi|116754743|ref|YP_843861.1| - 6.7e-45 153.2 0.0 1.1e-44 152.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family TsaE PF02367.17 gi|116754743|ref|YP_843861.1| - 0.00066 19.7 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|116754743|ref|YP_843861.1| - 0.0016 18.9 0.2 0.0069 16.9 0.1 2.2 1 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|116754743|ref|YP_843861.1| - 0.0048 16.8 0.0 0.011 15.7 0.0 1.6 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.6 gi|116754743|ref|YP_843861.1| - 0.0062 16.9 0.0 0.013 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain Cytidylate_kin PF02224.18 gi|116754743|ref|YP_843861.1| - 0.014 15.1 0.0 5.4 6.7 0.0 2.2 2 0 0 2 2 2 0 Cytidylate kinase AAA_33 PF13671.6 gi|116754743|ref|YP_843861.1| - 0.056 13.6 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|116754743|ref|YP_843861.1| - 0.094 12.8 0.0 0.15 12.1 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|116754743|ref|YP_843861.1| - 0.096 11.9 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|116754743|ref|YP_843861.1| - 0.1 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|116754743|ref|YP_843861.1| - 0.1 12.9 0.0 0.32 11.3 0.0 1.8 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|116754743|ref|YP_843861.1| - 0.13 12.8 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 ABC transporter IIGP PF05049.13 gi|116754743|ref|YP_843861.1| - 0.19 10.8 0.1 0.29 10.2 0.1 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) TIP49 PF06068.13 gi|116754743|ref|YP_843861.1| - 0.19 10.9 0.0 0.27 10.4 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_29 PF13555.6 gi|116754743|ref|YP_843861.1| - 0.2 11.4 0.0 0.34 10.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|116754743|ref|YP_843861.1| - 0.21 12.0 0.0 0.45 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Nitroreductase PF00881.24 gi|116754744|ref|YP_843862.1| - 1.4e-38 132.7 3.6 2.7e-22 79.6 1.4 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|116754744|ref|YP_843862.1| - 3.2e-24 85.7 0.2 3.9e-11 42.9 0.0 3.1 1 1 2 3 3 3 3 Putative TM nitroreductase Lentiviral_Tat PF02998.14 gi|116754744|ref|YP_843862.1| - 0.021 14.8 0.6 0.04 13.9 0.6 1.5 1 1 0 1 1 1 0 Lentiviral Tat protein Rrf2 PF02082.20 gi|116754745|ref|YP_843863.1| - 4e-05 23.9 0.0 5e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator TFIIE_alpha PF02002.17 gi|116754745|ref|YP_843863.1| - 5.5e-05 23.0 0.0 7.4e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_12 PF08461.10 gi|116754745|ref|YP_843863.1| - 5.6e-05 23.0 0.1 0.00013 21.8 0.1 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|116754745|ref|YP_843863.1| - 9.7e-05 22.2 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|116754745|ref|YP_843863.1| - 0.0002 21.2 0.0 0.00025 20.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|116754745|ref|YP_843863.1| - 0.00021 21.1 0.0 0.00027 20.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HemN_C PF06969.16 gi|116754745|ref|YP_843863.1| - 0.00025 21.0 0.1 0.00032 20.7 0.1 1.2 1 0 0 1 1 1 1 HemN C-terminal domain HTH_20 PF12840.7 gi|116754745|ref|YP_843863.1| - 0.00034 20.6 0.0 0.00045 20.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|116754745|ref|YP_843863.1| - 0.00037 20.4 0.0 0.00045 20.2 0.0 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|116754745|ref|YP_843863.1| - 0.00049 19.6 0.0 0.00072 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|116754745|ref|YP_843863.1| - 0.0085 16.1 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|116754745|ref|YP_843863.1| - 0.026 14.4 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|116754745|ref|YP_843863.1| - 0.033 14.1 0.0 0.053 13.5 0.0 1.3 1 0 0 1 1 1 0 HTH domain Replic_Relax PF13814.6 gi|116754745|ref|YP_843863.1| - 0.05 13.7 0.0 0.057 13.5 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Ribosomal_S19e PF01090.19 gi|116754745|ref|YP_843863.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.6 1 1 1 2 2 2 0 Ribosomal protein S19e DUF2250 PF10007.9 gi|116754745|ref|YP_843863.1| - 0.056 13.6 0.0 0.064 13.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DprA_WH PF17782.1 gi|116754745|ref|YP_843863.1| - 0.063 13.4 0.0 0.089 12.9 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain Aldolase_II PF00596.21 gi|116754746|ref|YP_843864.1| - 1.3e-35 123.0 0.0 1.4e-35 122.9 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain TPR_1 PF00515.28 gi|116754747|ref|YP_843865.1| - 2.2e-56 185.5 9.0 6.2e-10 38.5 0.5 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|116754747|ref|YP_843865.1| - 8.9e-44 144.1 15.7 3.3e-08 33.0 0.2 6.4 6 1 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|116754747|ref|YP_843865.1| - 3.3e-38 126.7 6.1 1.1e-06 28.4 0.0 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|116754747|ref|YP_843865.1| - 7.7e-35 119.3 17.6 1e-10 42.1 5.6 3.6 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|116754747|ref|YP_843865.1| - 1.4e-29 101.5 5.9 8.3e-08 31.8 0.1 6.1 1 1 5 6 6 6 5 TPR repeat TPR_17 PF13431.6 gi|116754747|ref|YP_843865.1| - 1.2e-27 94.3 10.2 5.2e-05 23.3 0.0 7.0 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|116754747|ref|YP_843865.1| - 8e-26 88.5 17.6 9.5e-07 29.1 2.6 6.1 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|116754747|ref|YP_843865.1| - 4.1e-23 81.4 16.1 1e-07 32.1 0.1 4.9 3 3 1 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|116754747|ref|YP_843865.1| - 2.1e-20 73.0 6.1 8.4e-08 32.6 0.8 3.5 1 1 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|116754747|ref|YP_843865.1| - 1.6e-19 68.4 10.0 0.0074 16.2 0.0 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|116754747|ref|YP_843865.1| - 7.1e-19 67.7 9.4 3e-08 33.7 0.4 4.2 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|116754747|ref|YP_843865.1| - 3.6e-13 49.2 2.8 0.24 12.1 0.0 6.1 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|116754747|ref|YP_843865.1| - 1e-12 47.5 19.7 0.098 12.6 0.0 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat DUF3856 PF12968.7 gi|116754747|ref|YP_843865.1| - 1.1e-11 45.0 7.0 0.005 16.9 0.1 5.4 1 1 3 4 4 4 3 Domain of Unknown Function (DUF3856) Fis1_TPR_C PF14853.6 gi|116754747|ref|YP_843865.1| - 7.9e-09 35.5 3.6 0.061 13.4 0.2 5.1 5 0 0 5 5 5 2 Fis1 C-terminal tetratricopeptide repeat ANAPC3 PF12895.7 gi|116754747|ref|YP_843865.1| - 2.4e-08 34.1 3.1 0.00027 21.1 0.2 3.5 2 2 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.18 gi|116754747|ref|YP_843865.1| - 3.9e-08 33.2 5.5 0.98 9.5 0.0 5.2 4 1 2 6 6 6 2 MIT (microtubule interacting and transport) domain BTAD PF03704.17 gi|116754747|ref|YP_843865.1| - 3.1e-07 30.9 8.7 0.0057 17.1 1.2 3.2 1 1 1 3 3 3 2 Bacterial transcriptional activator domain SRP_TPR_like PF17004.5 gi|116754747|ref|YP_843865.1| - 2.4e-06 27.5 0.1 0.011 15.8 0.0 3.3 1 1 3 4 4 4 2 Putative TPR-like repeat TPR_4 PF07721.14 gi|116754747|ref|YP_843865.1| - 4.9e-06 26.7 9.9 1.7 9.5 0.7 6.3 6 0 0 6 6 6 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|116754747|ref|YP_843865.1| - 1.6e-05 24.1 0.0 0.34 9.8 0.0 3.1 1 1 1 3 3 3 2 NMDA receptor-regulated protein 1 DUF5113 PF17140.4 gi|116754747|ref|YP_843865.1| - 0.0005 19.9 0.7 2.8 7.7 0.1 4.1 2 2 2 4 4 4 1 Domain of unknown function (DUF5113) TPR_5 PF12688.7 gi|116754747|ref|YP_843865.1| - 0.00061 20.0 0.6 0.0073 16.5 0.0 2.8 3 1 0 3 3 3 1 Tetratrico peptide repeat HTH_Bact PF18768.1 gi|116754747|ref|YP_843865.1| - 0.011 15.3 3.9 22 4.7 0.0 5.1 6 0 0 6 6 5 0 Helix-turn-helix bacterial domain NYD-SP12_N PF15015.6 gi|116754747|ref|YP_843865.1| - 0.018 13.4 0.0 0.075 11.4 0.0 1.9 2 0 0 2 2 2 0 Spermatogenesis-associated, N-terminal DUF627 PF04781.12 gi|116754747|ref|YP_843865.1| - 0.024 14.7 0.0 0.14 12.2 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF627) Wzy_C_2 PF11846.8 gi|116754747|ref|YP_843865.1| - 0.032 14.2 3.4 9.2 6.1 0.0 3.8 3 2 1 4 4 4 0 Virulence factor membrane-bound polymerase, C-terminal ANAPC5 PF12862.7 gi|116754747|ref|YP_843865.1| - 0.033 14.2 0.3 22 5.2 0.0 4.0 3 2 0 3 3 3 0 Anaphase-promoting complex subunit 5 Coatomer_E PF04733.14 gi|116754747|ref|YP_843865.1| - 0.033 13.6 0.1 5.4 6.3 0.0 2.4 2 1 0 2 2 2 0 Coatomer epsilon subunit SHNi-TPR PF10516.9 gi|116754747|ref|YP_843865.1| - 0.83 9.2 3.4 59 3.2 0.0 3.9 4 0 0 4 4 4 0 SHNi-TPR DUF5588 PF17826.1 gi|116754747|ref|YP_843865.1| - 0.87 8.4 2.4 43 2.8 0.1 3.1 1 1 1 2 2 2 0 Family of unknown function (DUF5588) Cdc6_C PF09079.11 gi|116754748|ref|YP_843866.1| - 2.2e-21 75.6 0.1 6.2e-21 74.2 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|116754748|ref|YP_843866.1| - 4e-13 49.8 0.0 1e-12 48.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|116754748|ref|YP_843866.1| - 1.1e-12 48.7 0.9 7.2e-11 42.8 0.1 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|116754748|ref|YP_843866.1| - 1.7e-09 38.2 0.1 5.2e-09 36.6 0.0 1.9 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|116754748|ref|YP_843866.1| - 2.9e-06 27.4 2.1 1.8e-05 24.8 0.3 2.7 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|116754748|ref|YP_843866.1| - 1.2e-05 24.9 0.0 2.2e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|116754748|ref|YP_843866.1| - 4.8e-05 23.3 0.0 0.00011 22.2 0.0 1.6 1 0 0 1 1 1 1 NACHT domain DUF2075 PF09848.9 gi|116754748|ref|YP_843866.1| - 0.00021 20.6 0.0 0.0003 20.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) RuvB_N PF05496.12 gi|116754748|ref|YP_843866.1| - 0.00023 21.0 0.1 0.096 12.4 0.0 2.5 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|116754748|ref|YP_843866.1| - 0.00024 20.9 0.1 0.00056 19.6 0.0 1.6 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|116754748|ref|YP_843866.1| - 0.00048 19.4 0.0 0.00099 18.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|116754748|ref|YP_843866.1| - 0.0022 18.6 0.2 0.01 16.4 0.1 2.1 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|116754748|ref|YP_843866.1| - 0.0024 17.1 0.0 0.0047 16.1 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain Zeta_toxin PF06414.12 gi|116754748|ref|YP_843866.1| - 0.0025 17.1 0.1 0.054 12.8 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin KAP_NTPase PF07693.14 gi|116754748|ref|YP_843866.1| - 0.0031 16.8 0.5 0.26 10.5 0.0 2.2 1 1 1 2 2 2 1 KAP family P-loop domain TsaE PF02367.17 gi|116754748|ref|YP_843866.1| - 0.0035 17.3 0.0 0.006 16.6 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|116754748|ref|YP_843866.1| - 0.0077 16.0 0.3 0.02 14.6 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|116754748|ref|YP_843866.1| - 0.0085 15.6 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_assoc_2 PF16193.5 gi|116754748|ref|YP_843866.1| - 0.0093 16.3 0.3 0.024 15.0 0.3 1.7 1 0 0 1 1 1 1 AAA C-terminal domain Sigma54_activ_2 PF14532.6 gi|116754748|ref|YP_843866.1| - 0.016 15.4 0.1 0.18 11.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|116754748|ref|YP_843866.1| - 0.018 14.1 0.0 0.041 12.9 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_2 PF07724.14 gi|116754748|ref|YP_843866.1| - 0.019 15.1 0.1 0.14 12.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) ResIII PF04851.15 gi|116754748|ref|YP_843866.1| - 0.033 14.2 0.0 0.072 13.1 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.22 gi|116754748|ref|YP_843866.1| - 0.033 14.6 0.0 0.073 13.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.17 gi|116754748|ref|YP_843866.1| - 0.034 13.9 0.1 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.6 gi|116754748|ref|YP_843866.1| - 0.058 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_32 PF13654.6 gi|116754748|ref|YP_843866.1| - 0.22 10.2 1.6 7.6 5.2 0.4 2.4 2 1 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|116754748|ref|YP_843866.1| - 0.33 10.7 3.2 0.6 9.8 1.0 2.3 2 1 0 2 2 2 0 DEAD/DEAH box helicase Auto_anti-p27 PF06677.12 gi|116754749|ref|YP_843867.1| - 1.2e-10 41.4 0.2 1.9e-10 40.7 0.2 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0147 PF03685.13 gi|116754750|ref|YP_843868.1| - 5.3e-36 122.5 1.5 5.9e-36 122.4 1.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|116754750|ref|YP_843868.1| - 0.0062 16.8 0.2 2.1 8.7 0.1 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0253) FSIP2 PF15783.5 gi|116754750|ref|YP_843868.1| - 0.0078 14.2 0.1 0.0083 14.1 0.1 1.0 1 0 0 1 1 1 1 Fibrous sheath-interacting protein 2 Ada_Zn_binding PF02805.16 gi|116754751|ref|YP_843869.1| - 2.7e-09 36.9 1.1 4.1e-09 36.3 0.3 1.6 2 0 0 2 2 2 1 Metal binding domain of Ada ABC_tran PF00005.27 gi|116754752|ref|YP_843870.1| - 7.7e-34 117.1 0.0 1.1e-33 116.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|116754752|ref|YP_843870.1| - 1.3e-11 44.4 0.5 6e-10 38.9 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|116754752|ref|YP_843870.1| - 9.9e-06 25.6 0.7 0.02 14.7 0.7 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|116754752|ref|YP_843870.1| - 6.2e-05 22.7 0.2 0.00012 21.7 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|116754752|ref|YP_843870.1| - 0.00024 21.0 0.0 0.00054 19.9 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|116754752|ref|YP_843870.1| - 0.00033 21.1 0.2 0.001 19.5 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|116754752|ref|YP_843870.1| - 0.00036 20.8 0.3 0.0018 18.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|116754752|ref|YP_843870.1| - 0.00044 19.9 0.3 0.023 14.2 0.3 2.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|116754752|ref|YP_843870.1| - 0.0021 18.6 0.2 0.0046 17.5 0.1 1.6 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|116754752|ref|YP_843870.1| - 0.0061 15.7 0.9 0.018 14.1 0.1 1.9 1 1 1 2 2 2 1 Type II/IV secretion system protein AAA_15 PF13175.6 gi|116754752|ref|YP_843870.1| - 0.0074 16.0 0.0 0.013 15.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain ATPase PF06745.13 gi|116754752|ref|YP_843870.1| - 0.009 15.4 0.9 1.7 8.0 0.1 2.2 2 0 0 2 2 2 1 KaiC AAA PF00004.29 gi|116754752|ref|YP_843870.1| - 0.015 15.8 0.3 2.1 8.8 0.1 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|116754752|ref|YP_843870.1| - 0.015 14.9 0.1 0.15 11.6 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Bclx_interact PF08945.10 gi|116754752|ref|YP_843870.1| - 0.017 14.9 0.2 0.058 13.2 0.1 1.8 2 0 0 2 2 2 0 Bcl-x interacting, BH3 domain MMR_HSR1 PF01926.23 gi|116754752|ref|YP_843870.1| - 0.024 14.7 0.2 0.073 13.1 0.1 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|116754752|ref|YP_843870.1| - 0.028 14.6 0.0 0.047 13.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|116754752|ref|YP_843870.1| - 0.034 13.9 0.1 0.56 9.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|116754752|ref|YP_843870.1| - 0.037 13.8 0.0 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.21 gi|116754752|ref|YP_843870.1| - 0.048 13.7 0.1 2.6 8.0 0.0 2.2 2 0 0 2 2 2 0 MutS domain V KdpD PF02702.17 gi|116754752|ref|YP_843870.1| - 0.056 12.9 0.1 0.091 12.2 0.1 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain ATPase_2 PF01637.18 gi|116754752|ref|YP_843870.1| - 0.06 13.2 0.1 0.61 10.0 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_10 PF12846.7 gi|116754752|ref|YP_843870.1| - 0.065 12.1 0.0 0.18 10.7 0.0 1.7 1 1 1 2 2 2 0 AAA-like domain NACHT PF05729.12 gi|116754752|ref|YP_843870.1| - 0.094 12.6 0.2 0.43 10.5 0.1 1.9 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|116754752|ref|YP_843870.1| - 0.1 12.3 0.1 0.31 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|116754752|ref|YP_843870.1| - 0.12 11.9 0.1 0.7 9.4 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region G-alpha PF00503.20 gi|116754752|ref|YP_843870.1| - 0.12 11.6 0.0 0.12 11.5 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit NB-ARC PF00931.22 gi|116754752|ref|YP_843870.1| - 0.12 11.5 0.2 0.29 10.3 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain UDPG_MGDP_dh_N PF03721.14 gi|116754753|ref|YP_843871.1| - 2.2e-34 118.7 0.0 3.1e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|116754753|ref|YP_843871.1| - 3.1e-18 65.8 0.0 4.9e-18 65.1 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|116754753|ref|YP_843871.1| - 0.00027 21.3 0.0 0.00053 20.4 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|116754753|ref|YP_843871.1| - 0.007 16.5 0.0 0.074 13.2 0.0 2.4 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|116754753|ref|YP_843871.1| - 0.035 13.5 0.0 21 4.4 0.0 3.0 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Hexapep PF00132.24 gi|116754754|ref|YP_843872.1| - 1.6e-28 97.3 13.4 1.7e-10 40.2 0.4 3.2 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|116754754|ref|YP_843872.1| - 4.4e-17 61.5 10.5 1.7e-07 30.9 1.1 3.5 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase Acetyltransf_11 PF13720.6 gi|116754754|ref|YP_843872.1| - 0.085 13.3 0.1 0.15 12.6 0.1 1.3 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Sas6_CC PF18594.1 gi|116754754|ref|YP_843872.1| - 0.6 9.9 2.7 1 9.2 2.7 1.3 1 0 0 1 1 1 0 Sas6/XLF/XRCC4 coiled-coil domain CART PF06373.11 gi|116754754|ref|YP_843872.1| - 0.83 9.9 2.9 0.96 9.7 0.0 2.3 2 1 0 2 2 2 0 Cocaine and amphetamine regulated transcript protein (CART) GFO_IDH_MocA PF01408.22 gi|116754755|ref|YP_843873.1| - 6.4e-22 78.6 0.1 1.1e-21 77.9 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|116754755|ref|YP_843873.1| - 1.3e-06 28.7 0.0 2.1e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|116754755|ref|YP_843873.1| - 4.9e-06 26.0 0.0 9.2e-06 25.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|116754755|ref|YP_843873.1| - 0.0005 20.6 0.1 0.0026 18.3 0.0 2.2 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|116754755|ref|YP_843873.1| - 0.00086 18.9 0.0 0.0019 17.8 0.0 1.5 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain CoA_binding PF02629.19 gi|116754755|ref|YP_843873.1| - 0.0024 18.5 0.0 0.0048 17.5 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain Sacchrp_dh_NADP PF03435.18 gi|116754755|ref|YP_843873.1| - 0.014 15.7 1.3 0.33 11.2 0.9 2.9 1 1 1 2 2 2 0 Saccharopine dehydrogenase NADP binding domain OCD_Mu_crystall PF02423.15 gi|116754755|ref|YP_843873.1| - 0.12 11.3 0.0 0.19 10.6 0.0 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family DegT_DnrJ_EryC1 PF01041.17 gi|116754756|ref|YP_843874.1| - 3e-129 431.4 0.0 3.4e-129 431.3 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|116754756|ref|YP_843874.1| - 8e-07 28.5 0.0 1.3e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|116754756|ref|YP_843874.1| - 7.8e-05 22.1 0.0 0.00037 19.9 0.0 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|116754756|ref|YP_843874.1| - 0.00087 18.3 0.0 0.0014 17.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|116754756|ref|YP_843874.1| - 0.0023 16.5 0.0 0.0033 16.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme MFS_1 PF07690.16 gi|116754757|ref|YP_843875.1| - 1.2e-27 96.8 48.9 2.8e-15 56.1 18.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|116754757|ref|YP_843875.1| - 4.4 6.1 21.5 2.3 7.0 18.8 1.9 2 1 0 2 2 2 0 MFS_1 like family UNC-93 PF05978.16 gi|116754757|ref|YP_843875.1| - 9.3 5.9 18.4 0.016 14.9 4.6 2.8 2 1 1 3 3 3 0 Ion channel regulatory protein UNC-93 DUF2202 PF09968.9 gi|116754758|ref|YP_843876.1| - 1.1e-64 217.1 0.6 1.5e-64 216.7 0.6 1.2 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DOMON PF03351.17 gi|116754758|ref|YP_843876.1| - 2.5e-27 95.6 0.0 4.5e-27 94.7 0.0 1.4 1 0 0 1 1 1 1 DOMON domain Rubrerythrin PF02915.17 gi|116754758|ref|YP_843876.1| - 0.0079 16.6 0.0 0.016 15.6 0.0 1.4 1 0 0 1 1 1 1 Rubrerythrin PhoPQ_related PF10142.9 gi|116754758|ref|YP_843876.1| - 0.062 11.9 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein EB_dh PF09459.10 gi|116754758|ref|YP_843876.1| - 0.065 13.2 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Ethylbenzene dehydrogenase Ferritin_2 PF13668.6 gi|116754758|ref|YP_843876.1| - 0.12 12.5 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Ferritin-like domain Antirestrict PF03230.13 gi|116754759|ref|YP_843877.1| - 0.12 12.4 2.7 0.5 10.4 0.2 2.5 1 1 0 2 2 2 0 Antirestriction protein FNIP_C PF14638.6 gi|116754759|ref|YP_843877.1| - 0.56 9.8 4.5 1 9.0 0.7 2.1 1 1 1 2 2 2 0 Folliculin-interacting protein C-terminus DUF11 PF01345.18 gi|116754760|ref|YP_843878.1| - 8.1e-05 22.9 0.0 0.0003 21.0 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function DUF11 Voltage_CLC PF00654.20 gi|116754761|ref|YP_843879.1| - 4.1e-97 325.6 33.1 4.1e-97 325.6 33.1 2.0 2 0 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.28 gi|116754761|ref|YP_843879.1| - 1.9e-23 82.7 5.5 1.7e-12 47.6 1.0 2.7 2 0 0 2 2 2 2 CBS domain Pox_P21 PF05313.12 gi|116754761|ref|YP_843879.1| - 0.01 15.4 1.7 0.022 14.3 1.7 1.5 1 0 0 1 1 1 0 Poxvirus P21 membrane protein Wzy_C_2 PF11846.8 gi|116754761|ref|YP_843879.1| - 0.071 13.0 1.5 0.11 12.3 0.1 2.0 2 0 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal tRNA-synt_1c PF00749.21 gi|116754762|ref|YP_843880.1| - 4.5e-66 222.9 0.0 5.5e-66 222.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|116754762|ref|YP_843880.1| - 4.3e-25 88.6 0.0 6.5e-25 88.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain NUDIX PF00293.28 gi|116754763|ref|YP_843881.1| - 1.1e-23 83.7 0.0 1.3e-23 83.5 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|116754763|ref|YP_843881.1| - 0.00074 19.1 0.0 0.0047 16.5 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) NUDIX_4 PF14815.6 gi|116754763|ref|YP_843881.1| - 0.046 13.7 0.0 0.081 12.9 0.0 1.5 1 1 0 1 1 1 0 NUDIX domain Pterin_bind PF00809.22 gi|116754764|ref|YP_843882.1| - 9e-57 192.5 0.1 1.3e-56 192.0 0.1 1.2 1 0 0 1 1 1 1 Pterin binding enzyme F420_ligase PF01996.16 gi|116754765|ref|YP_843883.1| - 4.9e-57 193.1 0.0 7.9e-57 192.4 0.0 1.3 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.23 gi|116754765|ref|YP_843883.1| - 6.4e-15 54.9 0.1 1.1e-14 54.1 0.1 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|116754765|ref|YP_843883.1| - 1.5e-09 38.1 0.4 3.2e-09 37.1 0.4 1.5 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|116754765|ref|YP_843883.1| - 0.013 15.1 3.0 1.4 8.4 0.5 2.3 1 1 1 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases NRD1_2 PF01995.16 gi|116754766|ref|YP_843884.1| - 2e-83 279.3 0.0 2.3e-83 279.1 0.0 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 E1-E2_ATPase PF00122.20 gi|116754767|ref|YP_843885.1| - 8.3e-43 146.0 0.1 8.3e-43 146.0 0.1 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|116754767|ref|YP_843885.1| - 1.1e-27 97.0 9.6 1.1e-27 97.0 9.6 1.8 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|116754767|ref|YP_843885.1| - 9.3e-20 71.8 0.1 5.7e-19 69.2 0.1 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|116754767|ref|YP_843885.1| - 5.7e-08 32.3 0.0 1.5e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|116754767|ref|YP_843885.1| - 5.9e-06 26.2 0.1 0.001 18.9 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|116754767|ref|YP_843885.1| - 9.4e-06 25.6 0.0 1.8e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Cation transport ATPase (P-type) HAD PF12710.7 gi|116754767|ref|YP_843885.1| - 0.015 15.7 0.0 0.033 14.6 0.0 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase TerC PF03741.16 gi|116754768|ref|YP_843886.1| - 5.2e-55 185.9 11.7 5.2e-55 185.9 11.7 2.2 3 0 0 3 3 3 1 Integral membrane protein TerC family DUF166 PF02593.14 gi|116754769|ref|YP_843887.1| - 1.6e-76 256.7 0.0 1.9e-76 256.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function TPR_1 PF00515.28 gi|116754770|ref|YP_843888.1| - 2e-33 112.8 8.0 1.7e-12 46.6 0.1 3.6 4 0 0 4 4 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|116754770|ref|YP_843888.1| - 1.6e-29 99.6 11.3 1.4e-10 40.4 0.1 4.4 4 1 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|116754770|ref|YP_843888.1| - 2.1e-24 83.6 3.9 2e-06 27.6 0.0 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|116754770|ref|YP_843888.1| - 1.1e-22 79.4 4.0 4.6e-08 32.6 0.0 3.2 2 1 1 3 3 3 3 TPR repeat TPR_16 PF13432.6 gi|116754770|ref|YP_843888.1| - 2.1e-18 66.6 7.2 6.8e-11 42.6 0.2 4.0 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|116754770|ref|YP_843888.1| - 5.5e-18 64.0 4.5 7.5e-06 26.0 0.0 4.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|116754770|ref|YP_843888.1| - 3.1e-16 59.4 9.3 1.4e-08 34.9 0.6 3.4 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|116754770|ref|YP_843888.1| - 1.1e-14 53.3 4.8 0.00043 20.1 0.1 4.4 3 2 1 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|116754770|ref|YP_843888.1| - 3.5e-13 49.5 10.1 3.3e-06 27.1 0.1 3.0 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|116754770|ref|YP_843888.1| - 4.3e-12 45.5 12.4 0.00097 18.9 0.2 5.0 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|116754770|ref|YP_843888.1| - 9.5e-12 45.3 7.1 3.4e-06 27.5 0.1 3.0 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|116754770|ref|YP_843888.1| - 3.2e-11 43.1 13.5 0.00045 20.8 0.2 4.9 1 1 4 5 5 5 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|116754770|ref|YP_843888.1| - 2.7e-08 33.2 0.5 0.0001 21.3 0.0 2.0 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 ANAPC3 PF12895.7 gi|116754770|ref|YP_843888.1| - 2.8e-06 27.5 1.1 0.0021 18.2 0.0 2.5 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|116754770|ref|YP_843888.1| - 5.4e-06 26.7 8.1 0.62 10.8 0.0 4.6 4 1 0 4 4 4 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|116754770|ref|YP_843888.1| - 1e-05 25.5 0.4 1.5 9.0 0.1 3.4 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat DUF5113 PF17140.4 gi|116754770|ref|YP_843888.1| - 3.2e-05 23.8 1.5 1.3 8.8 0.1 3.1 2 1 1 3 3 3 2 Domain of unknown function (DUF5113) DUF3856 PF12968.7 gi|116754770|ref|YP_843888.1| - 3.4e-05 24.0 3.3 0.29 11.2 0.3 3.9 1 1 1 2 2 2 2 Domain of Unknown Function (DUF3856) MIT PF04212.18 gi|116754770|ref|YP_843888.1| - 8e-05 22.6 2.0 2.1 8.5 0.0 3.5 3 0 0 3 3 3 2 MIT (microtubule interacting and transport) domain BTAD PF03704.17 gi|116754770|ref|YP_843888.1| - 0.00023 21.6 2.9 0.00067 20.1 0.1 2.3 1 1 0 2 2 2 1 Bacterial transcriptional activator domain SRP_TPR_like PF17004.5 gi|116754770|ref|YP_843888.1| - 0.003 17.5 0.1 0.22 11.5 0.0 2.8 1 1 2 3 3 3 2 Putative TPR-like repeat TPR_4 PF07721.14 gi|116754770|ref|YP_843888.1| - 0.0039 17.7 12.3 0.62 10.9 1.0 5.1 6 0 0 6 6 5 2 Tetratricopeptide repeat FAT PF02259.23 gi|116754770|ref|YP_843888.1| - 0.021 14.1 0.5 1.6 7.8 0.1 2.7 1 1 1 2 2 2 0 FAT domain PPR PF01535.20 gi|116754770|ref|YP_843888.1| - 0.028 14.6 2.4 35 4.9 0.1 3.9 4 0 0 4 4 4 0 PPR repeat RPN7 PF10602.9 gi|116754770|ref|YP_843888.1| - 0.035 13.8 0.5 0.62 9.7 0.4 2.6 1 1 0 1 1 1 0 26S proteasome subunit RPN7 Strep_SA_rep PF06696.11 gi|116754770|ref|YP_843888.1| - 0.14 12.2 1.1 48 4.1 0.0 3.3 3 0 0 3 3 3 0 Streptococcal surface antigen repeat TPR_3 PF07720.12 gi|116754770|ref|YP_843888.1| - 0.18 11.8 1.9 9.4 6.3 0.0 3.3 3 1 0 3 3 3 0 Tetratricopeptide repeat PrmA PF06325.13 gi|116754771|ref|YP_843889.1| - 0.0075 15.7 0.0 0.011 15.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) HypA PF01155.19 gi|116754771|ref|YP_843889.1| - 0.96 9.5 3.9 0.37 10.8 0.2 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|116754771|ref|YP_843889.1| - 4.6 7.3 8.0 16 5.6 4.4 2.8 2 1 0 2 2 2 0 Double zinc ribbon MutS_V PF00488.21 gi|116754772|ref|YP_843890.1| - 8.2e-84 280.3 0.4 1.3e-83 279.6 0.4 1.3 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 gi|116754772|ref|YP_843890.1| - 2.2e-43 147.1 0.0 1e-42 144.9 0.0 2.0 2 0 0 2 2 2 1 MutS domain I MutS_III PF05192.18 gi|116754772|ref|YP_843890.1| - 1e-40 140.0 1.1 2.4e-40 138.8 1.1 1.6 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 gi|116754772|ref|YP_843890.1| - 4.4e-33 113.5 0.2 1.3e-32 112.0 0.1 2.0 2 0 0 2 2 2 1 MutS family domain IV MutS_II PF05188.17 gi|116754772|ref|YP_843890.1| - 5e-14 52.7 0.0 1.8e-12 47.7 0.0 3.0 2 1 0 2 2 2 1 MutS domain II AAA_29 PF13555.6 gi|116754772|ref|YP_843890.1| - 0.027 14.2 0.0 0.067 12.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|116754772|ref|YP_843890.1| - 0.042 13.9 0.0 0.35 10.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|116754772|ref|YP_843890.1| - 0.056 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain MutL_C PF08676.11 gi|116754773|ref|YP_843891.1| - 2.9e-34 118.0 0.0 4.8e-34 117.2 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|116754773|ref|YP_843891.1| - 1.9e-33 114.7 0.0 3e-33 114.0 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|116754773|ref|YP_843891.1| - 2.1e-09 37.3 0.0 3.6e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|116754773|ref|YP_843891.1| - 5.3e-06 26.9 0.0 1.6e-05 25.4 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UDG PF03167.19 gi|116754774|ref|YP_843892.1| - 1.8e-43 148.2 0.0 2.2e-43 147.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily PBP_like_2 PF12849.7 gi|116754775|ref|YP_843893.1| - 2.1e-43 149.0 3.5 5.1e-43 147.8 3.5 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|116754775|ref|YP_843893.1| - 4.2e-24 84.7 0.1 5.9e-24 84.3 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|116754775|ref|YP_843893.1| - 6.6e-05 22.8 0.0 0.00019 21.2 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BclA_C PF18573.1 gi|116754776|ref|YP_843894.1| - 0.091 12.7 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 BclA C-terminal domain DUF87 PF01935.17 gi|116754777|ref|YP_843895.1| - 4.8e-22 79.2 0.1 8.1e-22 78.4 0.1 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|116754777|ref|YP_843895.1| - 0.0028 16.3 0.3 0.012 14.2 0.1 2.1 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|116754777|ref|YP_843895.1| - 0.0028 16.6 0.3 0.25 10.2 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|116754777|ref|YP_843895.1| - 0.061 12.7 0.7 3 7.1 0.1 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family Metallophos PF00149.28 gi|116754778|ref|YP_843896.1| - 5.1e-14 53.3 0.5 8.6e-14 52.5 0.5 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|116754778|ref|YP_843896.1| - 2.9e-12 47.1 0.1 4.7e-12 46.4 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|116754778|ref|YP_843896.1| - 0.048 13.0 0.0 1.1 8.5 0.0 2.2 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily HAD PF12710.7 gi|116754778|ref|YP_843896.1| - 0.062 13.7 0.2 0.38 11.1 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase SMC_N PF02463.19 gi|116754779|ref|YP_843897.1| - 7.8e-23 81.1 0.0 1.3e-22 80.3 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|116754779|ref|YP_843897.1| - 7.7e-17 62.4 22.5 7.7e-17 62.4 22.5 7.1 1 1 2 3 3 1 1 AAA domain AAA_15 PF13175.6 gi|116754779|ref|YP_843897.1| - 1.7e-12 47.7 4.9 2.8e-12 47.1 0.1 3.5 2 1 1 3 3 3 1 AAA ATPase domain AAA_29 PF13555.6 gi|116754779|ref|YP_843897.1| - 2.1e-07 30.5 0.1 5.8e-07 29.2 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|116754779|ref|YP_843897.1| - 8.6e-06 25.9 0.0 2.2e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|116754779|ref|YP_843897.1| - 2.4e-05 24.0 0.0 2.4e-05 24.0 0.0 6.2 6 1 1 8 8 8 1 AAA domain AAA_21 PF13304.6 gi|116754779|ref|YP_843897.1| - 0.0012 18.7 0.0 0.0012 18.7 0.0 3.4 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system Rad50_zn_hook PF04423.14 gi|116754779|ref|YP_843897.1| - 0.0021 17.8 0.4 0.0021 17.8 0.4 5.7 5 0 0 5 5 5 1 Rad50 zinc hook motif ABC_tran PF00005.27 gi|116754779|ref|YP_843897.1| - 0.0027 18.2 0.0 0.0027 18.2 0.0 4.4 4 3 0 4 4 4 1 ABC transporter Toxin_36 PF10550.9 gi|116754779|ref|YP_843897.1| - 0.027 15.8 4.5 6.7 8.3 0.8 5.4 3 0 0 3 3 3 0 Conantokin-G mollusc-toxin Nbs1_C PF08599.10 gi|116754779|ref|YP_843897.1| - 0.096 12.8 0.2 0.88 9.8 0.2 2.8 1 0 0 1 1 1 0 DNA damage repair protein Nbs1 MukB PF04310.12 gi|116754779|ref|YP_843897.1| - 0.3 10.8 0.0 0.3 10.8 0.0 4.0 5 1 1 6 6 6 0 MukB N-terminal T3SSipB PF16535.5 gi|116754779|ref|YP_843897.1| - 0.65 10.5 17.9 3.1 8.3 0.1 5.7 4 3 2 6 6 6 0 Type III cell invasion protein SipB BLOC1_2 PF10046.9 gi|116754779|ref|YP_843897.1| - 1 9.7 44.6 0.69 10.3 1.1 10.4 6 1 4 12 12 12 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.6 gi|116754779|ref|YP_843897.1| - 1.7 7.9 89.0 0.25 10.7 5.4 6.8 2 2 2 6 6 6 0 Growth-arrest specific micro-tubule binding Phage_GP20 PF06810.11 gi|116754779|ref|YP_843897.1| - 3.4 7.4 34.9 1.5 8.6 0.5 7.9 4 3 2 7 7 7 0 Phage minor structural protein GP20 DUF4405 PF14358.6 gi|116754781|ref|YP_843899.1| - 1.6 9.3 11.1 0.073 13.6 5.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) MFS_1 PF07690.16 gi|116754782|ref|YP_843900.1| - 3.3e-18 65.7 19.7 4e-18 65.5 19.7 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|116754782|ref|YP_843900.1| - 0.0019 16.7 6.1 0.0021 16.5 6.1 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector DUF3917 PF13055.6 gi|116754782|ref|YP_843900.1| - 9.7 6.7 11.4 0.64 10.5 1.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3917) tRNA_anti-codon PF01336.25 gi|116754783|ref|YP_843901.1| - 1.7e-08 34.3 0.0 1.4e-07 31.4 0.1 2.5 3 0 0 3 3 3 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.19 gi|116754783|ref|YP_843901.1| - 5.4e-08 33.1 9.8 5.4e-08 33.1 9.8 2.4 1 1 1 2 2 2 1 DnaJ central domain DHH PF01368.20 gi|116754783|ref|YP_843901.1| - 0.0001 22.5 0.2 0.0002 21.6 0.2 1.4 1 0 0 1 1 1 1 DHH family tRNA_anti_2 PF13742.6 gi|116754783|ref|YP_843901.1| - 0.00014 22.0 0.0 0.0011 19.1 0.0 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain PHF5 PF03660.14 gi|116754783|ref|YP_843901.1| - 0.005 17.0 4.4 0.005 17.0 4.4 2.8 2 1 1 3 3 3 1 PHF5-like protein S1 PF00575.23 gi|116754783|ref|YP_843901.1| - 0.0052 17.1 0.0 0.015 15.6 0.0 1.8 1 0 0 1 1 1 1 S1 RNA binding domain DZR PF12773.7 gi|116754783|ref|YP_843901.1| - 0.013 15.5 15.3 0.29 11.2 7.3 2.7 1 1 2 3 3 3 0 Double zinc ribbon Anti-TRAP PF15777.5 gi|116754783|ref|YP_843901.1| - 0.033 14.1 11.7 0.4 10.7 0.9 3.4 2 1 1 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein B12-binding_2 PF02607.17 gi|116754783|ref|YP_843901.1| - 0.075 13.5 0.0 0.28 11.7 0.0 1.9 1 0 0 1 1 1 0 B12 binding domain DUF5351 PF17302.2 gi|116754783|ref|YP_843901.1| - 0.091 13.0 21.2 0.51 10.6 5.9 3.6 3 0 0 3 3 3 0 Family of unknown function (DUF5351) HypA PF01155.19 gi|116754783|ref|YP_843901.1| - 1 9.4 15.1 7 6.7 0.8 3.6 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Radical_SAM PF04055.21 gi|116754784|ref|YP_843902.1| - 3.3e-17 63.3 0.1 1.9e-16 60.9 0.1 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|116754784|ref|YP_843902.1| - 5.3e-07 30.0 1.0 7e-07 29.6 0.1 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|116754784|ref|YP_843902.1| - 0.067 13.3 0.2 0.19 11.9 0.2 1.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain Peptidase_C69 PF03577.15 gi|116754785|ref|YP_843903.1| - 0.16 10.8 0.0 0.23 10.3 0.0 1.1 1 0 0 1 1 1 0 Peptidase family C69 TctA PF01970.16 gi|116754786|ref|YP_843904.1| - 4.8e-69 233.0 35.0 6e-69 232.7 35.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family PAS_9 PF13426.7 gi|116754787|ref|YP_843905.1| - 5.4e-50 168.0 0.0 7.7e-13 48.6 0.0 4.6 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.10 gi|116754787|ref|YP_843905.1| - 1.8e-45 153.7 1.0 7.7e-13 48.7 0.1 5.0 4 1 0 4 4 4 4 PAS fold PAS PF00989.25 gi|116754787|ref|YP_843905.1| - 1.6e-44 150.5 0.0 2.1e-11 43.8 0.0 5.8 5 1 0 5 5 5 4 PAS fold PAS_3 PF08447.12 gi|116754787|ref|YP_843905.1| - 3.3e-43 145.9 1.2 3.3e-12 46.5 0.0 5.7 6 1 0 6 6 5 4 PAS fold PAS_8 PF13188.7 gi|116754787|ref|YP_843905.1| - 2.2e-30 104.1 0.6 1.5e-07 31.2 0.0 4.8 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.26 gi|116754787|ref|YP_843905.1| - 4.3e-21 75.5 0.0 8e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|116754787|ref|YP_843905.1| - 4.1e-11 42.8 1.7 1.3e-10 41.2 0.1 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|116754787|ref|YP_843905.1| - 6.1e-06 26.4 2.8 0.25 11.5 0.0 5.6 6 2 0 6 6 5 1 PAS fold PAS_11 PF14598.6 gi|116754787|ref|YP_843905.1| - 1.3e-05 25.3 0.0 0.27 11.4 0.0 3.9 4 0 0 4 4 4 2 PAS domain TPR_8 PF13181.6 gi|116754787|ref|YP_843905.1| - 0.0063 16.6 0.5 1.2 9.5 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat HATPase_c_3 PF13589.6 gi|116754787|ref|YP_843905.1| - 0.0081 16.0 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MEKHLA PF08670.11 gi|116754787|ref|YP_843905.1| - 0.016 15.1 0.0 3.2 7.7 0.0 3.1 4 0 0 4 4 3 0 MEKHLA domain TPR_19 PF14559.6 gi|116754787|ref|YP_843905.1| - 0.02 15.4 0.1 0.83 10.2 0.1 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|116754787|ref|YP_843905.1| - 0.03 15.1 3.7 9 7.4 0.0 3.8 4 0 0 4 4 3 0 Tetratricopeptide repeat DASH_Duo1 PF08651.10 gi|116754787|ref|YP_843905.1| - 0.056 13.2 0.8 0.75 9.6 0.0 2.9 3 0 0 3 3 3 0 DASH complex subunit Duo1 HATPase_c_5 PF14501.6 gi|116754787|ref|YP_843905.1| - 0.067 13.1 0.0 0.2 11.6 0.0 1.8 1 1 0 1 1 1 0 GHKL domain HIP1_clath_bdg PF16515.5 gi|116754787|ref|YP_843905.1| - 1.5 9.5 5.3 1.9 9.2 2.0 2.5 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Cyclophil_like PF04126.13 gi|116754788|ref|YP_843906.1| - 7e-38 129.1 0.0 8e-38 128.9 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like Cyclophil_like2 PF18050.1 gi|116754788|ref|YP_843906.1| - 4e-07 30.0 0.0 5.3e-07 29.6 0.0 1.3 1 1 0 1 1 1 1 Cyclophilin-like family DUF3830 PF12903.7 gi|116754788|ref|YP_843906.1| - 0.0038 16.9 0.0 0.0057 16.3 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3830) tRNA_synthFbeta PF17759.1 gi|116754789|ref|YP_843907.1| - 5.7e-39 133.8 0.0 8.2e-39 133.3 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|116754789|ref|YP_843907.1| - 1.1e-16 60.8 0.0 5.6e-16 58.6 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|116754789|ref|YP_843907.1| - 4.1e-12 46.1 0.0 6.7e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.20 gi|116754789|ref|YP_843907.1| - 0.00049 19.6 0.1 0.004 16.7 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) PhetRS_B1 PF18262.1 gi|116754789|ref|YP_843907.1| - 0.057 13.6 0.0 0.44 10.8 0.0 2.4 2 1 1 3 3 3 0 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|116754790|ref|YP_843908.1| - 5.8e-94 314.1 0.0 7.6e-94 313.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|116754790|ref|YP_843908.1| - 1.8e-10 40.6 0.0 6.9e-10 38.7 0.0 1.8 1 1 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain HTH_45 PF14947.6 gi|116754790|ref|YP_843908.1| - 2e-08 34.1 0.0 0.0035 17.3 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix PheRS_DBD3 PF18553.1 gi|116754790|ref|YP_843908.1| - 0.00015 22.0 0.0 0.00062 20.0 0.0 2.1 2 0 0 2 2 2 1 PheRS DNA binding domain 3 DUF1495 PF07381.11 gi|116754790|ref|YP_843908.1| - 0.00017 21.3 0.0 0.35 10.7 0.0 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.6 gi|116754790|ref|YP_843908.1| - 0.00033 20.2 0.3 0.00078 19.0 0.3 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4364 PF14277.6 gi|116754790|ref|YP_843908.1| - 0.00045 20.0 0.0 0.047 13.5 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|116754790|ref|YP_843908.1| - 0.0012 19.3 0.1 2 9.0 0.0 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain tRNA-synt_2 PF00152.20 gi|116754790|ref|YP_843908.1| - 0.0018 17.5 0.1 0.021 13.9 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) Mrr_N PF14338.6 gi|116754790|ref|YP_843908.1| - 0.0023 18.0 0.2 3.5 7.8 0.0 3.5 2 1 1 3 3 3 1 Mrr N-terminal domain GerE PF00196.19 gi|116754790|ref|YP_843908.1| - 0.016 14.8 0.0 0.046 13.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_47 PF16221.5 gi|116754790|ref|YP_843908.1| - 0.016 14.7 0.1 0.032 13.8 0.1 1.5 1 0 0 1 1 1 0 winged helix-turn-helix DUF4423 PF14394.6 gi|116754790|ref|YP_843908.1| - 0.018 14.8 0.1 0.34 10.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_20 PF12840.7 gi|116754790|ref|YP_843908.1| - 0.028 14.5 0.3 0.14 12.3 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|116754790|ref|YP_843908.1| - 0.032 14.1 0.4 0.61 10.0 0.1 2.5 2 0 0 2 2 2 0 MarR family TrmB PF01978.19 gi|116754790|ref|YP_843908.1| - 0.035 14.0 0.0 2.7 8.0 0.0 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|116754790|ref|YP_843908.1| - 0.097 12.7 0.1 0.34 10.9 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|116754790|ref|YP_843908.1| - 0.098 12.6 0.1 1.2 9.2 0.0 2.4 2 0 0 2 2 2 0 MarR family AAA_assoc_C PF09821.9 gi|116754790|ref|YP_843908.1| - 0.14 12.7 0.1 0.45 11.1 0.0 1.9 2 0 0 2 2 1 0 C-terminal AAA-associated domain HTH_34 PF13601.6 gi|116754790|ref|YP_843908.1| - 0.18 12.0 0.0 9.2 6.5 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|116754790|ref|YP_843908.1| - 0.19 11.9 0.0 1.5 9.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Creatininase PF02633.14 gi|116754791|ref|YP_843909.1| - 6.2e-57 192.8 0.0 7.2e-57 192.6 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase STT3 PF02516.14 gi|116754792|ref|YP_843910.1| - 8.5e-26 90.9 22.4 2.8e-25 89.2 22.4 1.9 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|116754792|ref|YP_843910.1| - 1.8e-25 89.0 0.8 2.8e-25 88.4 0.2 1.7 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain Prenyltransf PF01255.19 gi|116754793|ref|YP_843911.1| - 2.7e-29 102.3 0.0 4.1e-28 98.4 0.0 1.9 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF1073 PF06381.11 gi|116754793|ref|YP_843911.1| - 0.042 12.6 0.1 0.16 10.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1073) DUF92 PF01940.16 gi|116754794|ref|YP_843912.1| - 5.7e-53 179.7 13.1 5.7e-53 179.7 13.1 3.0 2 2 0 2 2 2 1 Integral membrane protein DUF92 Shikimate_dh_N PF08501.11 gi|116754795|ref|YP_843913.1| - 6.7e-26 90.4 0.0 1.3e-25 89.4 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|116754795|ref|YP_843913.1| - 5.5e-13 49.2 0.0 7.8e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|116754795|ref|YP_843913.1| - 7.9e-12 44.7 0.7 1.6e-11 43.8 0.7 1.5 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain F420_oxidored PF03807.17 gi|116754795|ref|YP_843913.1| - 1.5e-06 28.7 0.1 3.6e-06 27.5 0.0 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|116754795|ref|YP_843913.1| - 0.0012 18.2 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|116754795|ref|YP_843913.1| - 0.0035 17.6 0.1 0.011 16.0 0.1 1.8 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain FAD_binding_2 PF00890.24 gi|116754795|ref|YP_843913.1| - 0.0061 15.7 0.1 0.0091 15.1 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain IlvN PF07991.12 gi|116754795|ref|YP_843913.1| - 0.0079 15.8 0.0 0.019 14.5 0.0 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain adh_short PF00106.25 gi|116754795|ref|YP_843913.1| - 0.0094 15.4 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase THF_DHG_CYH_C PF02882.19 gi|116754795|ref|YP_843913.1| - 0.015 14.6 0.2 5.2 6.4 0.1 2.2 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thi4 PF01946.17 gi|116754795|ref|YP_843913.1| - 0.026 13.8 0.1 1.2 8.3 0.1 2.2 2 0 0 2 2 2 0 Thi4 family NAD_binding_7 PF13241.6 gi|116754795|ref|YP_843913.1| - 0.033 14.6 0.0 0.051 14.0 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.16 gi|116754795|ref|YP_843913.1| - 0.071 12.8 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|116754795|ref|YP_843913.1| - 0.095 12.9 0.1 0.33 11.1 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.17 gi|116754796|ref|YP_843914.1| - 7.6e-50 169.3 0.0 8.8e-50 169.1 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|116754796|ref|YP_843914.1| - 5.5e-05 23.7 0.0 0.00012 22.6 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|116754796|ref|YP_843914.1| - 0.00011 21.7 0.0 0.00021 20.7 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|116754796|ref|YP_843914.1| - 0.0002 21.6 0.0 0.00032 20.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Phage_Gp19 PF09355.10 gi|116754796|ref|YP_843914.1| - 0.024 15.1 0.0 0.054 13.9 0.0 1.5 1 0 0 1 1 1 0 Phage protein Gp19/Gp15/Gp42 IlvN PF07991.12 gi|116754796|ref|YP_843914.1| - 0.025 14.2 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DpaA_N PF16924.5 gi|116754796|ref|YP_843914.1| - 0.027 14.6 0.0 0.13 12.3 0.0 2.0 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|116754796|ref|YP_843914.1| - 0.046 13.7 0.1 4 7.4 0.0 2.6 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Glyco_hydro_15 PF00723.21 gi|116754797|ref|YP_843915.1| - 9.1e-12 44.5 0.3 9e-08 31.3 0.0 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.13 gi|116754797|ref|YP_843915.1| - 0.011 15.0 0.1 0.11 11.6 0.0 2.4 2 1 0 2 2 2 0 Glycosyl-hydrolase family 116, catalytic region ADK PF00406.22 gi|116754798|ref|YP_843916.1| - 3.2e-60 202.6 0.0 3.8e-60 202.4 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|116754798|ref|YP_843916.1| - 8.2e-29 100.8 0.3 1.2e-28 100.2 0.0 1.4 2 0 0 2 2 1 1 AAA domain ADK_lid PF05191.14 gi|116754798|ref|YP_843916.1| - 5.1e-17 61.6 5.5 1.1e-16 60.5 4.3 2.0 2 0 0 2 2 2 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|116754798|ref|YP_843916.1| - 1.2e-06 29.1 0.1 5.5e-06 26.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|116754798|ref|YP_843916.1| - 5.2e-06 26.7 0.0 9.7e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|116754798|ref|YP_843916.1| - 4.9e-05 23.1 0.0 0.0013 18.4 0.0 2.1 1 1 1 2 2 2 1 Thymidylate kinase Cytidylate_kin PF02224.18 gi|116754798|ref|YP_843916.1| - 0.00011 22.0 0.0 0.00017 21.4 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase AAA PF00004.29 gi|116754798|ref|YP_843916.1| - 0.00059 20.3 0.1 0.0017 18.8 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|116754798|ref|YP_843916.1| - 0.0069 16.1 0.0 0.4 10.4 0.1 2.2 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|116754798|ref|YP_843916.1| - 0.0077 16.0 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Hydin_ADK PF17213.3 gi|116754798|ref|YP_843916.1| - 0.024 14.9 0.0 0.99 9.7 0.0 2.2 1 1 1 2 2 2 0 Hydin Adenylate kinase-like domain AAA_28 PF13521.6 gi|116754798|ref|YP_843916.1| - 0.024 14.9 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|116754798|ref|YP_843916.1| - 0.044 13.7 0.2 0.11 12.4 0.1 1.7 2 0 0 2 2 2 0 NTPase ABC_tran PF00005.27 gi|116754798|ref|YP_843916.1| - 0.082 13.4 0.0 0.1 13.1 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_5 PF07728.14 gi|116754798|ref|YP_843916.1| - 0.096 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) KTI12 PF08433.10 gi|116754798|ref|YP_843916.1| - 0.14 11.6 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 SKI PF01202.22 gi|116754798|ref|YP_843916.1| - 0.18 11.9 0.1 1.7 8.8 0.0 2.2 3 0 0 3 3 3 0 Shikimate kinase FeoA PF04023.14 gi|116754799|ref|YP_843917.1| - 1.8e-14 53.7 0.0 2e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 FeoA domain His_biosynth PF00977.21 gi|116754800|ref|YP_843918.1| - 1.8e-81 272.9 0.0 2.1e-81 272.7 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|116754800|ref|YP_843918.1| - 6.6e-08 32.0 0.0 0.0002 20.6 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|116754800|ref|YP_843918.1| - 2e-05 24.1 0.1 0.13 11.6 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.21 gi|116754800|ref|YP_843918.1| - 6.9e-05 22.2 0.0 0.014 14.7 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|116754800|ref|YP_843918.1| - 7e-05 22.3 0.0 0.0038 16.6 0.0 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator ThiG PF05690.14 gi|116754800|ref|YP_843918.1| - 7.5e-05 22.1 0.0 0.0031 16.8 0.0 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|116754800|ref|YP_843918.1| - 7.7e-05 22.1 0.0 0.2 11.0 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase PcrB PF01884.17 gi|116754800|ref|YP_843918.1| - 0.00068 19.2 0.0 0.011 15.2 0.0 2.1 2 0 0 2 2 2 1 PcrB family NanE PF04131.14 gi|116754800|ref|YP_843918.1| - 0.0066 15.7 0.1 0.058 12.6 0.0 2.3 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 gi|116754800|ref|YP_843918.1| - 0.015 14.3 0.1 0.1 11.6 0.0 1.9 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|116754800|ref|YP_843918.1| - 0.035 13.1 0.0 0.1 11.6 0.0 1.8 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Trp_syntA PF00290.20 gi|116754800|ref|YP_843918.1| - 0.058 12.2 0.1 0.094 11.6 0.1 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain GATase PF00117.28 gi|116754801|ref|YP_843919.1| - 1.6e-20 73.7 0.0 1.9e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|116754801|ref|YP_843919.1| - 4.4e-06 26.7 0.0 0.099 12.5 0.0 2.1 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|116754801|ref|YP_843919.1| - 1e-05 25.4 0.1 0.019 14.7 0.1 2.1 2 0 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.14 gi|116754801|ref|YP_843919.1| - 0.00031 20.4 0.0 0.00051 19.7 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Glu_synthase PF01645.17 gi|116754802|ref|YP_843920.1| - 8.2e-17 61.4 0.0 9.2e-12 44.8 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase SAICAR_synt PF01259.18 gi|116754803|ref|YP_843921.1| - 8e-43 146.9 0.0 1.9e-42 145.6 0.0 1.5 1 1 0 1 1 1 1 SAICAR synthetase BTV_NS2 PF04514.12 gi|116754803|ref|YP_843921.1| - 0.07 11.9 0.1 0.099 11.5 0.1 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 NosD PF05048.13 gi|116754804|ref|YP_843922.1| - 6.9e-52 176.1 37.3 4.8e-47 160.3 29.2 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|116754804|ref|YP_843922.1| - 2.3e-21 76.3 37.1 4.2e-13 49.4 5.4 2.7 1 1 1 2 2 2 2 Right handed beta helix region AICARFT_IMPCHas PF01808.18 gi|116754805|ref|YP_843923.1| - 2.7e-83 279.8 0.0 3.5e-83 279.5 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme DUF167 PF02594.16 gi|116754806|ref|YP_843924.1| - 2e-18 66.3 0.0 2.9e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 CinA_KH PF18146.1 gi|116754806|ref|YP_843924.1| - 0.045 13.9 0.0 0.12 12.5 0.0 1.6 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain Toprim PF01751.22 gi|116754807|ref|YP_843925.1| - 2.8e-07 30.7 0.0 2.8e-06 27.5 0.0 2.1 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|116754807|ref|YP_843925.1| - 5e-06 26.9 0.0 3.6e-05 24.2 0.0 2.1 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|116754807|ref|YP_843925.1| - 0.0012 19.2 0.0 0.0022 18.4 0.0 1.5 1 1 0 1 1 1 1 Toprim-like LepA_C PF06421.12 gi|116754807|ref|YP_843925.1| - 0.12 12.5 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 GTP-binding protein LepA C-terminus Sm_multidrug_ex PF06695.11 gi|116754809|ref|YP_843927.1| - 1.2e-35 122.8 3.6 1.9e-35 122.2 3.6 1.3 1 0 0 1 1 1 1 Putative small multi-drug export protein Methyltransf_31 PF13847.6 gi|116754810|ref|YP_843928.1| - 2.8e-24 85.7 0.0 3.7e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116754810|ref|YP_843928.1| - 5.3e-23 81.6 0.0 1e-22 80.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116754810|ref|YP_843928.1| - 4.3e-21 75.4 0.0 8.1e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|116754810|ref|YP_843928.1| - 4.3e-20 72.3 0.0 6.5e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|116754810|ref|YP_843928.1| - 3.9e-16 59.3 0.0 8.6e-16 58.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|116754810|ref|YP_843928.1| - 2.3e-14 53.3 0.0 3.1e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|116754810|ref|YP_843928.1| - 1.6e-07 31.0 0.0 4.6e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.14 gi|116754810|ref|YP_843928.1| - 1.9e-07 30.8 0.0 2.7e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|116754810|ref|YP_843928.1| - 2.8e-07 30.1 0.0 4.9e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|116754810|ref|YP_843928.1| - 4.3e-07 29.5 0.0 5.9e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain PCMT PF01135.19 gi|116754810|ref|YP_843928.1| - 9.2e-07 28.8 0.0 2e-06 27.7 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|116754810|ref|YP_843928.1| - 1.3e-05 24.4 0.0 1.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|116754810|ref|YP_843928.1| - 4.9e-05 23.0 0.0 6.9e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.12 gi|116754810|ref|YP_843928.1| - 0.00051 19.7 0.0 0.00077 19.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|116754810|ref|YP_843928.1| - 0.0021 18.1 0.0 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|116754810|ref|YP_843928.1| - 0.0038 16.2 0.0 0.0052 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|116754810|ref|YP_843928.1| - 0.008 15.6 0.0 0.01 15.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Fibrillarin PF01269.17 gi|116754810|ref|YP_843928.1| - 0.033 13.3 0.0 0.049 12.7 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin TehB PF03848.14 gi|116754810|ref|YP_843928.1| - 0.055 12.9 0.0 0.072 12.5 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_7 PF03492.15 gi|116754810|ref|YP_843928.1| - 0.16 11.2 1.1 3.4 6.8 0.0 2.7 2 1 1 3 3 3 0 SAM dependent carboxyl methyltransferase Methyltransf_5 PF01795.19 gi|116754810|ref|YP_843928.1| - 0.18 11.2 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family Methyltransf_8 PF05148.15 gi|116754810|ref|YP_843928.1| - 0.2 11.5 0.0 1.7 8.4 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase RrnaAD PF00398.20 gi|116754810|ref|YP_843928.1| - 0.23 10.5 0.0 0.32 10.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HATPase_c PF02518.26 gi|116754811|ref|YP_843929.1| - 1.1e-22 80.7 0.0 1.8e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|116754811|ref|YP_843929.1| - 5e-09 36.1 0.0 1.5e-08 34.5 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|116754811|ref|YP_843929.1| - 0.0025 17.7 0.0 0.0054 16.6 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|116754811|ref|YP_843929.1| - 0.0028 17.5 0.0 0.0051 16.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1772 PF08592.11 gi|116754811|ref|YP_843929.1| - 0.055 13.8 6.8 13 6.1 3.7 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1772) DUF3754 PF12576.8 gi|116754811|ref|YP_843929.1| - 5.9 6.8 7.6 6.4 6.7 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3754) Zn-ribbon_8 PF09723.10 gi|116754812|ref|YP_843930.1| - 1.4e-06 28.3 3.1 2.9e-06 27.3 3.1 1.5 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|116754812|ref|YP_843930.1| - 0.00057 19.9 0.2 0.00065 19.7 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|116754812|ref|YP_843930.1| - 0.0035 16.8 1.2 0.77 9.3 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|116754812|ref|YP_843930.1| - 0.0036 17.3 0.4 0.005 16.8 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF1451 PF07295.11 gi|116754812|ref|YP_843930.1| - 0.0037 17.3 0.5 0.0039 17.2 0.5 1.0 1 0 0 1 1 1 1 Zinc-ribbon containing domain TFIIS_C PF01096.18 gi|116754812|ref|YP_843930.1| - 0.0041 17.0 2.3 0.23 11.4 0.2 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1 PF03811.13 gi|116754812|ref|YP_843930.1| - 0.0064 16.2 5.7 0.0084 15.8 0.8 2.2 2 0 0 2 2 2 1 InsA N-terminal domain DUF35_N PF12172.8 gi|116754812|ref|YP_843930.1| - 0.0073 16.2 6.1 0.33 10.9 1.0 2.3 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|116754812|ref|YP_843930.1| - 0.0087 15.7 0.1 0.01 15.5 0.1 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 NRDD PF13597.6 gi|116754812|ref|YP_843930.1| - 0.015 14.2 0.6 0.016 14.0 0.6 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn_Tnp_IS1595 PF12760.7 gi|116754812|ref|YP_843930.1| - 0.017 15.1 4.9 0.44 10.6 0.7 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|116754812|ref|YP_843930.1| - 0.021 14.7 0.7 0.85 9.6 0.0 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|116754812|ref|YP_843930.1| - 0.029 14.3 0.5 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_10 PF10058.9 gi|116754812|ref|YP_843930.1| - 0.036 13.8 1.5 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc-ribbons_6 PF07191.12 gi|116754812|ref|YP_843930.1| - 0.039 13.9 0.2 0.039 13.9 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons Rubredoxin_2 PF18073.1 gi|116754812|ref|YP_843930.1| - 0.046 13.4 8.4 0.24 11.2 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-trcl PF13451.6 gi|116754812|ref|YP_843930.1| - 0.17 11.8 2.1 6.4 6.8 0.2 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|116754812|ref|YP_843930.1| - 0.36 10.3 5.5 0.97 8.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|116754812|ref|YP_843930.1| - 1.1 9.4 6.8 1.3 9.1 0.8 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 gi|116754812|ref|YP_843930.1| - 1.9 8.5 6.8 6 6.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF167 PF02594.16 gi|116754813|ref|YP_843931.1| - 2e-18 66.3 0.0 2.9e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 CinA_KH PF18146.1 gi|116754813|ref|YP_843931.1| - 0.045 13.9 0.0 0.12 12.5 0.0 1.6 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain Toprim PF01751.22 gi|116754814|ref|YP_843932.1| - 2.8e-07 30.7 0.0 2.8e-06 27.5 0.0 2.1 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|116754814|ref|YP_843932.1| - 5e-06 26.9 0.0 3.6e-05 24.2 0.0 2.1 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|116754814|ref|YP_843932.1| - 0.0012 19.2 0.0 0.0022 18.4 0.0 1.5 1 1 0 1 1 1 1 Toprim-like LepA_C PF06421.12 gi|116754814|ref|YP_843932.1| - 0.12 12.5 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 GTP-binding protein LepA C-terminus Sm_multidrug_ex PF06695.11 gi|116754816|ref|YP_843934.1| - 3.2e-37 127.8 3.4 5e-37 127.2 3.4 1.3 1 0 0 1 1 1 1 Putative small multi-drug export protein Methyltransf_31 PF13847.6 gi|116754817|ref|YP_843935.1| - 2.8e-24 85.7 0.0 3.7e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116754817|ref|YP_843935.1| - 5.3e-23 81.6 0.0 1e-22 80.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116754817|ref|YP_843935.1| - 4.3e-21 75.4 0.0 8.1e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|116754817|ref|YP_843935.1| - 4.3e-20 72.3 0.0 6.5e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|116754817|ref|YP_843935.1| - 3.9e-16 59.3 0.0 8.6e-16 58.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|116754817|ref|YP_843935.1| - 2.3e-14 53.3 0.0 3.1e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|116754817|ref|YP_843935.1| - 1.6e-07 31.0 0.0 4.6e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.14 gi|116754817|ref|YP_843935.1| - 1.9e-07 30.8 0.0 2.7e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|116754817|ref|YP_843935.1| - 2.8e-07 30.1 0.0 4.9e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|116754817|ref|YP_843935.1| - 4.3e-07 29.5 0.0 5.9e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain PCMT PF01135.19 gi|116754817|ref|YP_843935.1| - 9.2e-07 28.8 0.0 2e-06 27.7 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|116754817|ref|YP_843935.1| - 1.3e-05 24.4 0.0 1.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|116754817|ref|YP_843935.1| - 4.9e-05 23.0 0.0 6.9e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.12 gi|116754817|ref|YP_843935.1| - 0.00051 19.7 0.0 0.00077 19.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|116754817|ref|YP_843935.1| - 0.0021 18.1 0.0 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|116754817|ref|YP_843935.1| - 0.0038 16.2 0.0 0.0052 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|116754817|ref|YP_843935.1| - 0.008 15.6 0.0 0.01 15.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Fibrillarin PF01269.17 gi|116754817|ref|YP_843935.1| - 0.033 13.3 0.0 0.049 12.7 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin TehB PF03848.14 gi|116754817|ref|YP_843935.1| - 0.055 12.9 0.0 0.072 12.5 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_7 PF03492.15 gi|116754817|ref|YP_843935.1| - 0.16 11.2 1.1 3.4 6.8 0.0 2.7 2 1 1 3 3 3 0 SAM dependent carboxyl methyltransferase Methyltransf_5 PF01795.19 gi|116754817|ref|YP_843935.1| - 0.18 11.2 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family Methyltransf_8 PF05148.15 gi|116754817|ref|YP_843935.1| - 0.2 11.5 0.0 1.7 8.4 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase RrnaAD PF00398.20 gi|116754817|ref|YP_843935.1| - 0.23 10.5 0.0 0.32 10.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HATPase_c PF02518.26 gi|116754818|ref|YP_843936.1| - 1.1e-22 80.7 0.0 1.8e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|116754818|ref|YP_843936.1| - 5e-09 36.1 0.0 1.5e-08 34.5 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|116754818|ref|YP_843936.1| - 0.0025 17.7 0.0 0.0054 16.6 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|116754818|ref|YP_843936.1| - 0.0028 17.5 0.0 0.0051 16.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1772 PF08592.11 gi|116754818|ref|YP_843936.1| - 0.055 13.8 6.8 13 6.1 3.7 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1772) DUF3754 PF12576.8 gi|116754818|ref|YP_843936.1| - 5.9 6.8 7.6 6.4 6.7 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3754) Zn-ribbon_8 PF09723.10 gi|116754819|ref|YP_843937.1| - 1.4e-06 28.3 3.1 2.9e-06 27.3 3.1 1.5 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|116754819|ref|YP_843937.1| - 0.00057 19.9 0.2 0.00065 19.7 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|116754819|ref|YP_843937.1| - 0.0035 16.8 1.2 0.77 9.3 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|116754819|ref|YP_843937.1| - 0.0036 17.3 0.4 0.005 16.8 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF1451 PF07295.11 gi|116754819|ref|YP_843937.1| - 0.0037 17.3 0.5 0.0039 17.2 0.5 1.0 1 0 0 1 1 1 1 Zinc-ribbon containing domain TFIIS_C PF01096.18 gi|116754819|ref|YP_843937.1| - 0.0041 17.0 2.3 0.23 11.4 0.2 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1 PF03811.13 gi|116754819|ref|YP_843937.1| - 0.0064 16.2 5.7 0.0084 15.8 0.8 2.2 2 0 0 2 2 2 1 InsA N-terminal domain DUF35_N PF12172.8 gi|116754819|ref|YP_843937.1| - 0.0073 16.2 6.1 0.33 10.9 1.0 2.3 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|116754819|ref|YP_843937.1| - 0.0087 15.7 0.1 0.01 15.5 0.1 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 NRDD PF13597.6 gi|116754819|ref|YP_843937.1| - 0.015 14.2 0.6 0.016 14.0 0.6 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn_Tnp_IS1595 PF12760.7 gi|116754819|ref|YP_843937.1| - 0.017 15.1 4.9 0.44 10.6 0.7 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|116754819|ref|YP_843937.1| - 0.021 14.7 0.7 0.85 9.6 0.0 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|116754819|ref|YP_843937.1| - 0.029 14.3 0.5 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_10 PF10058.9 gi|116754819|ref|YP_843937.1| - 0.036 13.8 1.5 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc-ribbons_6 PF07191.12 gi|116754819|ref|YP_843937.1| - 0.039 13.9 0.2 0.039 13.9 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons Rubredoxin_2 PF18073.1 gi|116754819|ref|YP_843937.1| - 0.046 13.4 8.4 0.24 11.2 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-trcl PF13451.6 gi|116754819|ref|YP_843937.1| - 0.17 11.8 2.1 6.4 6.8 0.2 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|116754819|ref|YP_843937.1| - 0.36 10.3 5.5 0.97 8.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|116754819|ref|YP_843937.1| - 1.1 9.4 6.8 1.3 9.1 0.8 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 gi|116754819|ref|YP_843937.1| - 1.9 8.5 6.8 6 6.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF167 PF02594.16 gi|116754820|ref|YP_843938.1| - 2e-18 66.3 0.0 2.9e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 CinA_KH PF18146.1 gi|116754820|ref|YP_843938.1| - 0.045 13.9 0.0 0.12 12.5 0.0 1.6 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain Toprim PF01751.22 gi|116754821|ref|YP_843939.1| - 2.8e-07 30.7 0.0 2.8e-06 27.5 0.0 2.1 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|116754821|ref|YP_843939.1| - 5e-06 26.9 0.0 3.6e-05 24.2 0.0 2.1 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|116754821|ref|YP_843939.1| - 0.0012 19.2 0.0 0.0022 18.4 0.0 1.5 1 1 0 1 1 1 1 Toprim-like LepA_C PF06421.12 gi|116754821|ref|YP_843939.1| - 0.12 12.5 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 GTP-binding protein LepA C-terminus Sm_multidrug_ex PF06695.11 gi|116754823|ref|YP_843941.1| - 1.2e-35 122.8 3.6 1.9e-35 122.2 3.6 1.3 1 0 0 1 1 1 1 Putative small multi-drug export protein Methyltransf_31 PF13847.6 gi|116754824|ref|YP_843942.1| - 2.8e-24 85.7 0.0 3.7e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116754824|ref|YP_843942.1| - 5.3e-23 81.6 0.0 1e-22 80.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116754824|ref|YP_843942.1| - 4.3e-21 75.4 0.0 8.1e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|116754824|ref|YP_843942.1| - 4.3e-20 72.3 0.0 6.5e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|116754824|ref|YP_843942.1| - 3.9e-16 59.3 0.0 8.6e-16 58.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|116754824|ref|YP_843942.1| - 2.3e-14 53.3 0.0 3.1e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|116754824|ref|YP_843942.1| - 1.6e-07 31.0 0.0 4.6e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.14 gi|116754824|ref|YP_843942.1| - 1.9e-07 30.8 0.0 2.7e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|116754824|ref|YP_843942.1| - 2.8e-07 30.1 0.0 4.9e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|116754824|ref|YP_843942.1| - 4.3e-07 29.5 0.0 5.9e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain PCMT PF01135.19 gi|116754824|ref|YP_843942.1| - 9.2e-07 28.8 0.0 2e-06 27.7 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|116754824|ref|YP_843942.1| - 1.3e-05 24.4 0.0 1.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|116754824|ref|YP_843942.1| - 4.9e-05 23.0 0.0 6.9e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.12 gi|116754824|ref|YP_843942.1| - 0.00051 19.7 0.0 0.00077 19.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|116754824|ref|YP_843942.1| - 0.0021 18.1 0.0 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|116754824|ref|YP_843942.1| - 0.0038 16.2 0.0 0.0052 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|116754824|ref|YP_843942.1| - 0.008 15.6 0.0 0.01 15.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Fibrillarin PF01269.17 gi|116754824|ref|YP_843942.1| - 0.033 13.3 0.0 0.049 12.7 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin TehB PF03848.14 gi|116754824|ref|YP_843942.1| - 0.055 12.9 0.0 0.072 12.5 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_7 PF03492.15 gi|116754824|ref|YP_843942.1| - 0.16 11.2 1.1 3.4 6.8 0.0 2.7 2 1 1 3 3 3 0 SAM dependent carboxyl methyltransferase Methyltransf_5 PF01795.19 gi|116754824|ref|YP_843942.1| - 0.18 11.2 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family Methyltransf_8 PF05148.15 gi|116754824|ref|YP_843942.1| - 0.2 11.5 0.0 1.7 8.4 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase RrnaAD PF00398.20 gi|116754824|ref|YP_843942.1| - 0.23 10.5 0.0 0.32 10.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HATPase_c PF02518.26 gi|116754825|ref|YP_843943.1| - 1.1e-22 80.7 0.0 1.8e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|116754825|ref|YP_843943.1| - 5e-09 36.1 0.0 1.5e-08 34.5 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|116754825|ref|YP_843943.1| - 0.0025 17.7 0.0 0.0054 16.6 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|116754825|ref|YP_843943.1| - 0.0028 17.5 0.0 0.0051 16.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1772 PF08592.11 gi|116754825|ref|YP_843943.1| - 0.055 13.8 6.8 13 6.1 3.7 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1772) DUF3754 PF12576.8 gi|116754825|ref|YP_843943.1| - 5.9 6.8 7.6 6.4 6.7 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3754) Zn-ribbon_8 PF09723.10 gi|116754826|ref|YP_843944.1| - 1.4e-06 28.3 3.1 2.9e-06 27.3 3.1 1.5 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|116754826|ref|YP_843944.1| - 0.00057 19.9 0.2 0.00065 19.7 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|116754826|ref|YP_843944.1| - 0.0035 16.8 1.2 0.77 9.3 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|116754826|ref|YP_843944.1| - 0.0036 17.3 0.4 0.005 16.8 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF1451 PF07295.11 gi|116754826|ref|YP_843944.1| - 0.0037 17.3 0.5 0.0039 17.2 0.5 1.0 1 0 0 1 1 1 1 Zinc-ribbon containing domain TFIIS_C PF01096.18 gi|116754826|ref|YP_843944.1| - 0.0041 17.0 2.3 0.23 11.4 0.2 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1 PF03811.13 gi|116754826|ref|YP_843944.1| - 0.0064 16.2 5.7 0.0084 15.8 0.8 2.2 2 0 0 2 2 2 1 InsA N-terminal domain DUF35_N PF12172.8 gi|116754826|ref|YP_843944.1| - 0.0073 16.2 6.1 0.33 10.9 1.0 2.3 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|116754826|ref|YP_843944.1| - 0.0087 15.7 0.1 0.01 15.5 0.1 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 NRDD PF13597.6 gi|116754826|ref|YP_843944.1| - 0.015 14.2 0.6 0.016 14.0 0.6 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn_Tnp_IS1595 PF12760.7 gi|116754826|ref|YP_843944.1| - 0.017 15.1 4.9 0.44 10.6 0.7 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|116754826|ref|YP_843944.1| - 0.021 14.7 0.7 0.85 9.6 0.0 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|116754826|ref|YP_843944.1| - 0.029 14.3 0.5 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_10 PF10058.9 gi|116754826|ref|YP_843944.1| - 0.036 13.8 1.5 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc-ribbons_6 PF07191.12 gi|116754826|ref|YP_843944.1| - 0.039 13.9 0.2 0.039 13.9 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons Rubredoxin_2 PF18073.1 gi|116754826|ref|YP_843944.1| - 0.046 13.4 8.4 0.24 11.2 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-trcl PF13451.6 gi|116754826|ref|YP_843944.1| - 0.17 11.8 2.1 6.4 6.8 0.2 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|116754826|ref|YP_843944.1| - 0.36 10.3 5.5 0.97 8.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|116754826|ref|YP_843944.1| - 1.1 9.4 6.8 1.3 9.1 0.8 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 gi|116754826|ref|YP_843944.1| - 1.9 8.5 6.8 6 6.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HMGL-like PF00682.19 gi|116754827|ref|YP_843945.1| - 2.9e-84 282.7 0.2 3.6e-84 282.4 0.2 1.1 1 0 0 1 1 1 1 HMGL-like DUF561 PF04481.12 gi|116754827|ref|YP_843945.1| - 1.5e-05 24.3 0.0 0.14 11.3 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF561) FbpA PF05833.11 gi|116754828|ref|YP_843946.1| - 2.1e-75 254.3 0.0 2.7e-75 253.9 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|116754828|ref|YP_843946.1| - 1.1e-22 80.7 0.0 2.1e-22 79.8 0.0 1.4 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|116754828|ref|YP_843946.1| - 0.003 17.7 0.0 0.0071 16.5 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain H2TH PF06831.14 gi|116754828|ref|YP_843946.1| - 0.01 15.8 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 Formamidopyrimidine-DNA glycosylase H2TH domain DUF2917 PF11142.8 gi|116754828|ref|YP_843946.1| - 0.017 14.5 0.1 0.062 12.7 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2917) Ribosomal_S13 PF00416.22 gi|116754828|ref|YP_843946.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S13/S18 Orn_Arg_deC_N PF02784.16 gi|116754830|ref|YP_843948.1| - 1.7e-40 139.0 0.0 2.9e-40 138.2 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Arg_decarb_HB PF17810.1 gi|116754830|ref|YP_843948.1| - 3.2e-19 68.9 0.1 1.4e-18 66.9 0.1 2.1 1 0 0 1 1 1 1 Arginine decarboxylase helical bundle domain SDH_sah PF01972.16 gi|116754831|ref|YP_843949.1| - 9.9e-110 366.0 2.3 1.2e-109 365.8 2.3 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|116754831|ref|YP_843949.1| - 0.0027 17.6 0.2 0.0051 16.7 0.2 1.5 1 1 0 1 1 1 1 Clp protease ECH_1 PF00378.20 gi|116754831|ref|YP_843949.1| - 0.017 14.4 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|116754831|ref|YP_843949.1| - 0.14 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S49 Radical_SAM_N PF08497.10 gi|116754832|ref|YP_843950.1| - 1.4e-130 434.9 0.0 1.8e-130 434.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|116754832|ref|YP_843950.1| - 9e-25 87.8 0.0 1.3e-24 87.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|116754832|ref|YP_843950.1| - 4.5e-19 69.4 1.2 5.9e-18 65.8 1.2 2.5 3 0 0 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|116754832|ref|YP_843950.1| - 0.026 14.6 0.1 6.9 6.7 0.0 3.1 2 1 0 2 2 2 0 B12 binding domain Glycos_transf_3 PF00591.21 gi|116754833|ref|YP_843951.1| - 1.9e-96 322.5 1.2 2.6e-96 322.1 1.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|116754833|ref|YP_843951.1| - 2.4e-18 65.8 2.9 4.9e-18 64.7 2.9 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.22 gi|116754834|ref|YP_843952.1| - 1.1e-36 126.4 0.0 1.3e-36 126.2 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMO PF03060.15 gi|116754834|ref|YP_843952.1| - 0.0062 16.0 0.5 0.021 14.2 0.2 2.0 1 1 2 3 3 3 1 Nitronate monooxygenase Chorismate_bind PF00425.18 gi|116754835|ref|YP_843953.1| - 1.1e-97 326.7 0.0 3.9e-95 318.3 0.0 3.1 2 1 1 3 3 3 2 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|116754835|ref|YP_843953.1| - 3.2e-36 124.7 0.0 5.4e-34 117.4 0.0 2.6 3 0 0 3 3 3 2 Anthranilate synthase component I, N terminal region IGPS PF00218.21 gi|116754836|ref|YP_843954.1| - 7.3e-58 195.7 0.0 8.9e-58 195.4 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|116754836|ref|YP_843954.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein Dus PF01207.17 gi|116754836|ref|YP_843954.1| - 0.013 14.6 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) TgMIC1 PF11476.8 gi|116754836|ref|YP_843954.1| - 0.029 14.1 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 Toxoplasma gondii micronemal protein 1 TgMIC1 NanE PF04131.14 gi|116754836|ref|YP_843954.1| - 0.037 13.2 0.1 0.089 12.0 0.1 1.6 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Peripla_BP_6 PF13458.6 gi|116754836|ref|YP_843954.1| - 0.21 11.2 0.0 9 5.8 0.0 2.1 2 0 0 2 2 2 0 Periplasmic binding protein Pyr_redox_2 PF07992.14 gi|116754837|ref|YP_843955.1| - 2.3e-44 151.8 0.0 2.9e-44 151.5 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|116754837|ref|YP_843955.1| - 7.7e-22 77.7 0.4 9.4e-16 58.1 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|116754837|ref|YP_843955.1| - 3.8e-05 23.8 0.1 0.099 12.9 0.0 2.8 2 1 0 2 2 2 2 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|116754837|ref|YP_843955.1| - 0.00014 21.1 0.1 0.019 14.1 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|116754837|ref|YP_843955.1| - 0.0011 18.1 0.1 0.68 8.9 0.0 3.0 2 1 1 3 3 3 1 Lycopene cyclase protein TrkA_N PF02254.18 gi|116754837|ref|YP_843955.1| - 0.0019 18.4 0.4 0.49 10.7 0.1 2.4 2 0 0 2 2 2 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|116754837|ref|YP_843955.1| - 0.0034 16.7 0.0 1 8.6 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 gi|116754837|ref|YP_843955.1| - 0.0042 17.6 0.0 0.013 16.0 0.0 1.8 1 1 1 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|116754837|ref|YP_843955.1| - 0.0071 16.2 0.3 0.77 9.6 0.0 2.6 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|116754837|ref|YP_843955.1| - 0.0089 15.6 0.8 3.3 7.2 0.1 3.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase DUF1188 PF06690.11 gi|116754837|ref|YP_843955.1| - 0.016 14.7 0.0 0.31 10.6 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1188) Amino_oxidase PF01593.24 gi|116754837|ref|YP_843955.1| - 0.018 14.3 0.0 0.026 13.8 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|116754837|ref|YP_843955.1| - 0.023 14.7 2.9 0.61 10.1 0.0 3.2 3 1 1 4 4 4 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|116754837|ref|YP_843955.1| - 0.059 12.2 1.0 9.9 4.9 0.1 2.9 3 0 0 3 3 3 0 Tryptophan halogenase NAD_binding_7 PF13241.6 gi|116754837|ref|YP_843955.1| - 0.096 13.1 0.0 0.41 11.1 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding HCBP_related PF06594.11 gi|116754837|ref|YP_843955.1| - 0.1 12.6 0.0 0.45 10.5 0.0 2.1 2 0 0 2 2 2 0 Haemolysin-type calcium binding protein related domain GIDA PF01134.22 gi|116754837|ref|YP_843955.1| - 0.14 11.3 1.4 28 3.6 0.2 3.2 3 1 0 3 3 3 0 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|116754837|ref|YP_843955.1| - 0.16 12.0 0.1 6.4 6.8 0.0 2.9 4 0 0 4 4 3 0 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.24 gi|116754837|ref|YP_843955.1| - 0.2 12.1 1.5 12 6.4 0.1 2.6 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|116754837|ref|YP_843955.1| - 0.29 10.3 0.9 11 5.1 0.1 2.2 2 0 0 2 2 2 0 FAD binding domain FKBP_C PF00254.28 gi|116754840|ref|YP_843958.1| - 2.9e-23 82.0 0.0 3.6e-23 81.7 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase MazE_antitoxin PF04014.18 gi|116754840|ref|YP_843958.1| - 0.4 10.7 5.9 0.18 11.7 1.2 2.8 3 1 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin STT3 PF02516.14 gi|116754841|ref|YP_843959.1| - 8.6e-26 90.9 26.8 8.6e-26 90.9 26.8 1.5 2 0 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|116754841|ref|YP_843959.1| - 8.4e-12 45.2 0.1 1.4e-11 44.5 0.1 1.4 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|116754841|ref|YP_843959.1| - 3.6e-09 37.0 13.3 3.6e-09 37.0 13.3 3.6 2 1 2 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Arteri_GP4 PF02497.15 gi|116754841|ref|YP_843959.1| - 0.14 12.3 0.9 0.32 11.1 0.9 1.6 1 0 0 1 1 1 0 Arterivirus glycoprotein Glycos_transf_1 PF00534.20 gi|116754842|ref|YP_843960.1| - 1.6e-31 109.2 0.0 2.6e-31 108.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|116754842|ref|YP_843960.1| - 7.7e-31 107.4 1.0 3.5e-30 105.2 1.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|116754842|ref|YP_843960.1| - 1.2e-26 93.7 0.0 2.3e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|116754842|ref|YP_843960.1| - 1e-23 84.5 0.1 3.1e-23 83.0 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|116754842|ref|YP_843960.1| - 8.1e-19 68.3 1.3 6.3e-16 58.8 1.3 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|116754842|ref|YP_843960.1| - 8.9e-09 35.5 0.1 1.6e-08 34.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|116754842|ref|YP_843960.1| - 1.9e-07 31.3 0.0 3.7e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF4921 PF16268.5 gi|116754843|ref|YP_843961.1| - 2.3e-16 59.6 0.0 2.7e-15 56.1 0.0 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4921) GalP_UDP_transf PF01087.22 gi|116754843|ref|YP_843961.1| - 1.4e-10 41.9 0.0 6.7e-10 39.7 0.0 1.9 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain DUF4931 PF16285.5 gi|116754843|ref|YP_843961.1| - 3.3e-05 23.3 0.5 0.00013 21.4 0.0 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4931) GalP_UDP_tr_C PF02744.17 gi|116754843|ref|YP_843961.1| - 0.00033 20.4 0.0 0.00045 20.0 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.8 gi|116754843|ref|YP_843961.1| - 0.11 13.0 0.0 0.32 11.5 0.0 1.8 2 0 0 2 2 2 0 Scavenger mRNA decapping enzyme C-term binding Glycos_transf_1 PF00534.20 gi|116754844|ref|YP_843962.1| - 2.3e-29 102.1 0.0 3.6e-29 101.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|116754844|ref|YP_843962.1| - 3.8e-25 88.9 0.0 1.3e-24 87.1 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|116754844|ref|YP_843962.1| - 6.8e-24 85.1 1.4 4e-23 82.6 0.0 2.5 2 1 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|116754844|ref|YP_843962.1| - 8.9e-20 71.5 0.0 1.7e-19 70.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|116754844|ref|YP_843962.1| - 2.8e-14 53.4 0.0 1e-13 51.6 0.0 1.9 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|116754844|ref|YP_843962.1| - 4.3e-07 30.2 0.0 8e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|116754844|ref|YP_843962.1| - 0.04 13.9 0.0 0.23 11.5 0.0 2.0 1 1 0 1 1 1 0 Glycosyl transferase 4-like Glycogen_syn PF05693.13 gi|116754845|ref|YP_843963.1| - 5.3e-20 71.5 0.0 4.2e-09 35.5 0.0 2.7 2 1 0 2 2 2 2 Glycogen synthase Glyco_transf_4 PF13439.6 gi|116754845|ref|YP_843963.1| - 0.00018 21.6 0.0 0.00033 20.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|116754845|ref|YP_843963.1| - 0.00038 20.0 0.0 0.0011 18.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|116754845|ref|YP_843963.1| - 0.04 14.4 0.0 0.15 12.5 0.0 2.0 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|116754845|ref|YP_843963.1| - 0.042 13.5 0.1 0.1 12.3 0.0 1.6 2 0 0 2 2 2 0 Starch synthase catalytic domain ATPase PF06745.13 gi|116754846|ref|YP_843964.1| - 2e-46 158.2 0.1 2.4e-46 158.0 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|116754846|ref|YP_843964.1| - 0.0001 21.9 0.1 0.00026 20.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|116754846|ref|YP_843964.1| - 0.0045 16.3 0.3 0.0084 15.4 0.3 1.4 1 0 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|116754846|ref|YP_843964.1| - 0.0051 16.2 0.0 0.011 15.0 0.0 1.6 2 1 0 2 2 2 1 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|116754846|ref|YP_843964.1| - 0.013 14.7 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.17 gi|116754846|ref|YP_843964.1| - 0.034 13.9 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein MEDS PF14417.6 gi|116754846|ref|YP_843964.1| - 0.039 13.8 0.0 0.066 13.0 0.0 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_19 PF13245.6 gi|116754846|ref|YP_843964.1| - 0.041 14.2 0.0 0.076 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|116754846|ref|YP_843964.1| - 0.064 13.3 0.1 0.17 11.9 0.1 1.7 1 1 1 2 2 2 0 AAA domain AAA PF00004.29 gi|116754846|ref|YP_843964.1| - 0.082 13.3 1.4 1.3 9.5 1.4 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.7 gi|116754846|ref|YP_843964.1| - 0.097 11.6 0.1 0.15 11.0 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.6 gi|116754846|ref|YP_843964.1| - 0.31 11.3 1.6 2.6 8.3 1.6 2.1 1 1 0 1 1 1 0 AAA domain Csc2 PF18320.1 gi|116754847|ref|YP_843965.1| - 3.7e-53 180.4 0.1 5.1e-53 180.0 0.1 1.2 1 0 0 1 1 1 1 Csc2 Crispr DEAD PF00270.29 gi|116754849|ref|YP_843967.1| - 2.4e-11 43.7 0.0 6.2e-11 42.4 0.0 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|116754849|ref|YP_843967.1| - 0.0048 16.9 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|116754849|ref|YP_843967.1| - 0.0052 17.1 0.1 0.013 15.8 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Cas_Cas4 PF01930.17 gi|116754850|ref|YP_843968.1| - 3.2e-25 89.1 0.3 3.6e-25 89.0 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|116754850|ref|YP_843968.1| - 8.2e-07 29.2 0.4 0.00024 21.1 0.0 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 gi|116754850|ref|YP_843968.1| - 0.0065 15.9 0.7 0.014 14.7 0.1 1.7 1 1 1 2 2 2 1 CRISPR-associated exonuclease Csa1 Dna2 PF08696.11 gi|116754850|ref|YP_843968.1| - 0.087 12.6 0.0 3.4 7.4 0.0 2.5 3 0 0 3 3 3 0 DNA replication factor Dna2 Cas_Cas1 PF01867.16 gi|116754851|ref|YP_843969.1| - 9.3e-83 277.6 0.0 1.4e-82 277.0 0.0 1.3 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.9 gi|116754852|ref|YP_843970.1| - 1.4e-21 76.4 0.2 1.6e-21 76.2 0.2 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 RcsD_ABL PF16359.5 gi|116754852|ref|YP_843970.1| - 0.11 12.7 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 RcsD-ABL domain SIL1 PF16782.5 gi|116754852|ref|YP_843970.1| - 0.17 11.1 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 Nucleotide exchange factor SIL1 MarR PF01047.22 gi|116754853|ref|YP_843971.1| - 5.3e-06 26.3 0.8 7.9e-06 25.7 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|116754853|ref|YP_843971.1| - 3e-05 23.7 0.0 5.5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_1 PF00126.27 gi|116754853|ref|YP_843971.1| - 4.5e-05 23.3 0.0 7.9e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.19 gi|116754853|ref|YP_843971.1| - 4.8e-05 23.5 0.1 8.2e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|116754853|ref|YP_843971.1| - 0.00023 21.0 0.1 0.00045 20.0 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|116754853|ref|YP_843971.1| - 0.00023 21.0 0.2 0.00064 19.5 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|116754853|ref|YP_843971.1| - 0.00034 20.1 0.2 0.00068 19.2 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|116754853|ref|YP_843971.1| - 0.0011 18.9 0.2 0.0024 17.8 0.2 1.6 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|116754853|ref|YP_843971.1| - 0.0021 18.4 0.1 0.0061 16.9 0.1 1.8 2 0 0 2 2 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|116754853|ref|YP_843971.1| - 0.0036 17.3 0.0 0.0059 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|116754853|ref|YP_843971.1| - 0.0069 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|116754853|ref|YP_843971.1| - 0.0091 16.0 0.1 0.018 15.0 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|116754853|ref|YP_843971.1| - 0.0093 15.8 0.1 0.018 14.9 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|116754853|ref|YP_843971.1| - 0.0094 15.7 0.5 0.027 14.2 0.4 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) Mga PF05043.13 gi|116754853|ref|YP_843971.1| - 0.014 16.0 0.0 0.033 14.8 0.0 1.7 1 0 0 1 1 1 0 Mga helix-turn-helix domain DUF1670 PF07900.11 gi|116754853|ref|YP_843971.1| - 0.02 14.3 0.1 0.029 13.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) Sigma70_r4 PF04545.16 gi|116754853|ref|YP_843971.1| - 0.021 14.3 0.1 0.049 13.2 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.6 gi|116754853|ref|YP_843971.1| - 0.032 14.7 1.3 0.051 14.1 0.3 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_6 PF01418.17 gi|116754853|ref|YP_843971.1| - 0.032 14.2 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_36 PF13730.6 gi|116754853|ref|YP_843971.1| - 0.038 13.9 0.0 0.066 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma54_DBD PF04552.13 gi|116754853|ref|YP_843971.1| - 0.045 13.4 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_23 PF13384.6 gi|116754853|ref|YP_843971.1| - 0.047 13.5 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain RuvB_C PF05491.13 gi|116754853|ref|YP_843971.1| - 0.049 13.5 0.1 0.084 12.8 0.1 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_7 PF02796.15 gi|116754853|ref|YP_843971.1| - 0.067 13.3 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Replic_Relax PF13814.6 gi|116754853|ref|YP_843971.1| - 0.076 13.1 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_Tnp_ISL3 PF13542.6 gi|116754853|ref|YP_843971.1| - 0.077 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.19 gi|116754853|ref|YP_843971.1| - 0.082 12.5 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|116754853|ref|YP_843971.1| - 0.11 12.3 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|116754853|ref|YP_843971.1| - 0.13 12.4 0.0 0.34 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|116754853|ref|YP_843971.1| - 0.14 12.4 0.4 1.7 8.9 0.2 2.4 2 1 0 2 2 2 0 Winged helix DNA-binding domain CRISPR_Cas6 PF10040.9 gi|116754854|ref|YP_843972.1| - 6.4e-15 55.6 0.0 1e-14 54.9 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 DUF4064 PF13273.6 gi|116754855|ref|YP_843973.1| - 4.3e-10 39.8 18.4 4.3e-10 39.8 18.4 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF4064) DUF4131 PF13567.6 gi|116754855|ref|YP_843973.1| - 0.033 13.8 6.2 0.11 12.1 6.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Phage_holin_3_6 PF07332.11 gi|116754855|ref|YP_843973.1| - 2.7 8.1 22.0 1.3e+02 2.6 22.0 2.1 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF373 PF04123.13 gi|116754855|ref|YP_843973.1| - 2.8 7.3 6.6 0.47 9.9 2.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF373) DUF308 PF03729.13 gi|116754855|ref|YP_843973.1| - 2.9 8.3 32.7 14 6.1 17.6 3.3 1 1 2 3 3 3 0 Short repeat of unknown function (DUF308) SRP54 PF00448.22 gi|116754856|ref|YP_843974.1| - 2.3e-73 246.0 0.3 3.1e-73 245.6 0.3 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|116754856|ref|YP_843974.1| - 3.5e-12 46.4 0.7 3.5e-12 46.4 0.7 2.0 3 0 0 3 3 1 1 SRP54-type protein, helical bundle domain AAA_17 PF13207.6 gi|116754856|ref|YP_843974.1| - 2.1e-06 28.2 0.5 5.4e-06 26.9 0.2 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|116754856|ref|YP_843974.1| - 2.2e-06 27.5 1.0 3.9e-06 26.7 0.2 1.8 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|116754856|ref|YP_843974.1| - 1.3e-05 24.9 0.2 0.0012 18.6 0.1 2.8 2 1 1 3 3 3 1 Thymidylate kinase Zeta_toxin PF06414.12 gi|116754856|ref|YP_843974.1| - 7.4e-05 22.1 0.1 0.00015 21.2 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 gi|116754856|ref|YP_843974.1| - 0.0003 21.2 0.2 0.0011 19.4 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|116754856|ref|YP_843974.1| - 0.00032 20.6 0.0 0.00062 19.7 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.6 gi|116754856|ref|YP_843974.1| - 0.00044 20.7 2.2 0.00051 20.5 0.1 2.1 2 2 0 2 2 2 1 AAA ATPase domain CbiA PF01656.23 gi|116754856|ref|YP_843974.1| - 0.0006 19.9 0.0 0.0018 18.3 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.6 gi|116754856|ref|YP_843974.1| - 0.00095 19.3 0.0 0.0016 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|116754856|ref|YP_843974.1| - 0.0021 18.3 0.2 0.004 17.4 0.2 1.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|116754856|ref|YP_843974.1| - 0.0023 17.9 1.3 0.02 14.8 1.2 2.3 1 1 1 2 2 2 1 NTPase MobB PF03205.14 gi|116754856|ref|YP_843974.1| - 0.0033 17.3 0.8 0.012 15.5 0.1 2.2 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ResIII PF04851.15 gi|116754856|ref|YP_843974.1| - 0.0037 17.3 0.1 0.007 16.4 0.1 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|116754856|ref|YP_843974.1| - 0.0096 15.0 0.4 0.54 9.3 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein LytR_C PF13399.6 gi|116754856|ref|YP_843974.1| - 0.011 16.7 0.6 0.044 14.8 0.1 2.3 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator KdpD PF02702.17 gi|116754856|ref|YP_843974.1| - 0.012 15.1 0.3 0.028 13.9 0.2 1.7 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain MeaB PF03308.16 gi|116754856|ref|YP_843974.1| - 0.014 14.4 0.2 0.027 13.4 0.2 1.6 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF2075 PF09848.9 gi|116754856|ref|YP_843974.1| - 0.017 14.3 0.2 0.026 13.8 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|116754856|ref|YP_843974.1| - 0.018 14.6 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|116754856|ref|YP_843974.1| - 0.021 15.2 0.3 0.056 13.8 0.2 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|116754856|ref|YP_843974.1| - 0.023 15.0 0.2 0.063 13.6 0.2 1.7 1 1 0 1 1 1 0 AAA domain LpxK PF02606.14 gi|116754856|ref|YP_843974.1| - 0.027 13.6 0.0 0.045 12.8 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase 6PF2K PF01591.18 gi|116754856|ref|YP_843974.1| - 0.077 12.3 0.1 0.15 11.4 0.1 1.4 1 1 0 1 1 1 0 6-phosphofructo-2-kinase KTI12 PF08433.10 gi|116754856|ref|YP_843974.1| - 0.098 12.1 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_24 PF13479.6 gi|116754856|ref|YP_843974.1| - 0.16 11.7 0.3 0.24 11.1 0.3 1.4 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|116754856|ref|YP_843974.1| - 0.26 11.4 1.2 1.8 8.7 1.2 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase Prefoldin PF02996.17 gi|116754857|ref|YP_843975.1| - 2.6e-25 88.6 0.5 3.2e-25 88.4 0.5 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|116754857|ref|YP_843975.1| - 1.2e-05 25.3 3.8 0.0032 17.4 0.6 2.3 2 0 0 2 2 2 2 Prefoldin subunit APG6_N PF17675.1 gi|116754857|ref|YP_843975.1| - 0.00016 22.2 5.2 0.03 14.9 1.0 2.0 2 0 0 2 2 2 2 Apg6 coiled-coil region FliD_C PF07195.12 gi|116754857|ref|YP_843975.1| - 0.0048 16.3 0.1 0.0058 16.1 0.1 1.2 1 1 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus OmpH PF03938.14 gi|116754857|ref|YP_843975.1| - 0.013 15.9 6.1 0.084 13.2 2.0 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Tektin PF03148.14 gi|116754857|ref|YP_843975.1| - 0.016 14.0 1.1 0.016 14.0 1.1 1.8 2 0 0 2 2 2 0 Tektin family V-SNARE PF05008.15 gi|116754857|ref|YP_843975.1| - 0.032 14.6 8.5 0.8 10.1 0.1 2.5 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DHR10 PF18595.1 gi|116754857|ref|YP_843975.1| - 0.065 13.3 8.1 0.16 12.1 3.3 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain HrpB7 PF09486.10 gi|116754857|ref|YP_843975.1| - 0.078 13.4 7.2 0.051 14.0 2.9 2.0 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) WXG100 PF06013.12 gi|116754857|ref|YP_843975.1| - 0.082 13.2 5.6 0.33 11.2 0.5 2.9 2 1 1 3 3 3 0 Proteins of 100 residues with WXG DUF1664 PF07889.12 gi|116754857|ref|YP_843975.1| - 0.11 12.6 0.6 0.4 10.7 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF4226 PF10774.9 gi|116754857|ref|YP_843975.1| - 0.11 12.8 3.0 0.1 12.9 1.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) DUF4055 PF13264.6 gi|116754857|ref|YP_843975.1| - 0.13 12.5 2.7 0.4 10.8 2.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4055) Fmp27_WPPW PF10359.9 gi|116754857|ref|YP_843975.1| - 0.14 11.0 2.1 0.12 11.2 1.1 1.3 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Rx_N PF18052.1 gi|116754857|ref|YP_843975.1| - 0.15 12.4 3.4 0.23 11.8 0.9 2.1 2 1 0 2 2 2 0 Rx N-terminal domain IDO PF01231.18 gi|116754857|ref|YP_843975.1| - 0.16 10.7 0.7 0.22 10.3 0.7 1.1 1 0 0 1 1 1 0 Indoleamine 2,3-dioxygenase JAKMIP_CC3 PF16034.5 gi|116754857|ref|YP_843975.1| - 0.22 11.4 6.1 0.17 11.8 1.8 2.1 2 0 0 2 2 2 0 JAKMIP CC3 domain DUF4140 PF13600.6 gi|116754857|ref|YP_843975.1| - 0.25 11.8 4.5 0.52 10.8 1.1 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Nsp1_C PF05064.13 gi|116754857|ref|YP_843975.1| - 0.36 10.7 2.9 0.25 11.2 0.5 1.8 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF5446 PF17522.2 gi|116754857|ref|YP_843975.1| - 0.38 10.9 3.6 0.75 10.0 3.6 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5446) YkyA PF10368.9 gi|116754857|ref|YP_843975.1| - 0.42 10.2 7.2 0.56 9.9 4.3 2.1 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein HAUS-augmin3 PF14932.6 gi|116754857|ref|YP_843975.1| - 0.43 10.1 6.0 0.55 9.8 1.6 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Seryl_tRNA_N PF02403.22 gi|116754857|ref|YP_843975.1| - 0.5 10.6 7.5 3.6 7.9 2.9 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain AAA_13 PF13166.6 gi|116754857|ref|YP_843975.1| - 0.55 8.8 3.4 0.54 8.8 1.4 1.7 2 0 0 2 2 2 0 AAA domain CENP-F_leu_zip PF10473.9 gi|116754857|ref|YP_843975.1| - 0.63 10.1 8.0 2.4 8.2 2.6 2.4 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.11 gi|116754857|ref|YP_843975.1| - 0.67 8.8 6.8 0.47 9.3 2.8 1.9 2 0 0 2 2 2 0 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|116754857|ref|YP_843975.1| - 0.76 10.2 4.8 3.2 8.2 0.3 2.6 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) DUF4349 PF14257.6 gi|116754857|ref|YP_843975.1| - 1 8.8 9.0 0.37 10.2 6.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) SlyX PF04102.12 gi|116754857|ref|YP_843975.1| - 3 8.5 7.6 0.73 10.5 3.1 2.1 2 1 0 2 2 2 0 SlyX Ribosomal_L18A PF01775.17 gi|116754858|ref|YP_843976.1| - 8.8e-10 38.7 0.0 1.3e-09 38.2 0.0 1.3 1 1 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|116754859|ref|YP_843977.1| - 1.2e-69 233.6 0.5 1.4e-69 233.4 0.5 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|116754860|ref|YP_843978.1| - 2.2e-12 47.0 0.3 2.5e-12 46.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|116754861|ref|YP_843979.1| - 4e-22 77.6 9.9 5.3e-22 77.2 9.9 1.2 1 0 0 1 1 1 1 Ribosomal L39 protein QueC PF06508.13 gi|116754862|ref|YP_843980.1| - 2.1e-05 24.1 0.0 6.7e-05 22.5 0.0 1.7 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|116754862|ref|YP_843980.1| - 0.0062 16.2 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|116754862|ref|YP_843980.1| - 0.031 14.3 0.0 0.084 12.9 0.0 1.7 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family dsDNA_bind PF01984.20 gi|116754863|ref|YP_843981.1| - 4.4e-29 101.0 18.3 4.9e-29 100.8 18.3 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Spy1 PF11357.8 gi|116754863|ref|YP_843981.1| - 0.015 15.5 0.3 0.018 15.3 0.3 1.2 1 0 0 1 1 1 0 Cell cycle regulatory protein DUF4224 PF13986.6 gi|116754863|ref|YP_843981.1| - 0.25 11.3 2.7 0.42 10.5 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4224) DUF4355 PF14265.6 gi|116754863|ref|YP_843981.1| - 0.36 11.1 11.2 0.041 14.1 7.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4355) Ntox1 PF15500.6 gi|116754863|ref|YP_843981.1| - 0.95 9.9 4.5 7.6 7.0 3.6 2.1 1 1 1 2 2 2 0 Putative RNase-like toxin, toxin_1 DUF4192 PF13830.6 gi|116754863|ref|YP_843981.1| - 2 8.4 5.5 2.3 8.2 5.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4192) Ribosomal_S19e PF01090.19 gi|116754864|ref|YP_843982.1| - 4.6e-58 194.8 0.1 5.2e-58 194.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_27 PF13463.6 gi|116754864|ref|YP_843982.1| - 0.0001 22.7 0.2 0.00021 21.7 0.2 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain RuvB_C PF05491.13 gi|116754864|ref|YP_843982.1| - 0.0058 16.5 0.0 0.17 11.8 0.0 2.2 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|116754864|ref|YP_843982.1| - 0.009 16.0 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix GntR PF00392.21 gi|116754864|ref|YP_843982.1| - 0.051 13.2 0.1 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|116754864|ref|YP_843982.1| - 0.072 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|116754864|ref|YP_843982.1| - 0.075 12.8 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_12 PF08461.10 gi|116754864|ref|YP_843982.1| - 0.14 12.2 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain CCG PF02754.16 gi|116754865|ref|YP_843983.1| - 3.4e-26 91.3 0.1 4.9e-12 45.9 0.0 2.2 2 0 0 2 2 2 2 Cysteine-rich domain GAGA PF09237.11 gi|116754865|ref|YP_843983.1| - 0.026 14.3 0.2 0.24 11.2 0.0 2.1 2 0 0 2 2 2 0 GAGA factor Cas_CXXC_CXXC PF09706.10 gi|116754865|ref|YP_843983.1| - 0.28 11.4 2.0 17 5.7 0.3 2.3 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) Fer4_8 PF13183.6 gi|116754866|ref|YP_843984.1| - 3.4e-10 40.2 5.3 6.1e-10 39.4 5.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|116754866|ref|YP_843984.1| - 3.6e-09 37.0 5.5 5.7e-09 36.4 5.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116754866|ref|YP_843984.1| - 2.7e-08 33.8 5.2 5e-08 33.0 5.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754866|ref|YP_843984.1| - 5.1e-06 27.0 3.5 1.1e-05 25.9 3.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|116754866|ref|YP_843984.1| - 0.0018 18.0 10.8 0.18 11.7 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116754866|ref|YP_843984.1| - 0.0034 17.5 12.1 0.0096 16.0 11.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754866|ref|YP_843984.1| - 0.0063 16.5 13.8 0.062 13.4 3.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|116754866|ref|YP_843984.1| - 0.013 15.7 12.3 0.044 13.9 12.3 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116754866|ref|YP_843984.1| - 0.048 13.8 10.6 0.077 13.1 1.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|116754866|ref|YP_843984.1| - 0.09 13.7 11.6 1.9 9.5 10.9 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|116754866|ref|YP_843984.1| - 0.17 12.4 6.0 0.3 11.6 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|116754866|ref|YP_843984.1| - 0.31 11.7 12.0 0.18 12.4 3.0 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|116754866|ref|YP_843984.1| - 0.92 10.3 4.1 13 6.6 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|116754866|ref|YP_843984.1| - 1.1 10.3 15.4 3.6 8.7 3.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|116754866|ref|YP_843984.1| - 2 8.7 7.7 9.9 6.4 0.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|116754867|ref|YP_843985.1| - 1e-37 126.5 80.2 3.6e-08 32.9 4.8 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|116754867|ref|YP_843985.1| - 5.6e-28 97.3 97.7 8e-09 36.0 7.3 5.1 1 1 6 7 7 7 7 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116754867|ref|YP_843985.1| - 1.2e-26 91.6 77.9 5.6e-07 29.4 3.7 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_21 PF14697.6 gi|116754867|ref|YP_843985.1| - 1.6e-25 89.0 55.6 7.7e-09 35.6 9.3 5.6 4 2 0 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116754867|ref|YP_843985.1| - 3.2e-24 84.8 54.1 1.6e-05 24.9 10.4 7.0 5 2 2 7 7 7 7 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116754867|ref|YP_843985.1| - 3.3e-24 84.8 53.7 6.5e-07 29.4 4.5 5.4 2 1 3 6 6 6 6 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754867|ref|YP_843985.1| - 2.3e-19 68.2 72.1 7.5e-05 22.6 2.3 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_16 PF13484.6 gi|116754867|ref|YP_843985.1| - 2.7e-16 60.2 58.2 0.017 16.0 0.9 8.0 5 2 1 7 7 7 6 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|116754867|ref|YP_843985.1| - 1.2e-11 44.9 55.6 0.0074 16.7 8.0 6.6 2 1 6 8 8 8 7 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|116754867|ref|YP_843985.1| - 1.4e-10 40.8 71.7 0.0007 19.9 3.9 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_15 PF13459.6 gi|116754867|ref|YP_843985.1| - 1e-08 35.7 59.2 0.0081 16.9 0.5 8.2 8 1 0 8 8 7 6 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|116754867|ref|YP_843985.1| - 8e-06 26.3 67.0 0.23 12.0 10.3 7.6 2 2 8 10 10 10 6 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|116754867|ref|YP_843985.1| - 0.014 16.0 69.9 0.061 13.9 2.7 8.5 7 1 1 8 8 8 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|116754867|ref|YP_843985.1| - 0.024 15.5 1.3 0.024 15.5 1.3 8.1 6 2 4 10 10 10 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|116754867|ref|YP_843985.1| - 0.13 13.2 96.7 0.16 13.0 4.4 8.3 8 0 0 8 8 8 0 4Fe-4S binding domain FlpD PF02662.16 gi|116754868|ref|YP_843986.1| - 6.9e-54 181.1 0.7 4.2e-51 172.1 0.0 3.2 4 0 0 4 4 3 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.27 gi|116754868|ref|YP_843986.1| - 7.2e-21 73.1 49.7 1e-07 31.4 1.8 5.3 5 1 0 5 5 4 3 4Fe-4S binding domain Pyr_redox_2 PF07992.14 gi|116754868|ref|YP_843986.1| - 1.3e-17 64.0 0.0 4.5e-17 62.2 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|116754868|ref|YP_843986.1| - 2e-15 57.1 32.5 9.3e-08 32.5 13.1 4.7 4 1 1 5 5 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116754868|ref|YP_843986.1| - 3.1e-15 55.5 57.1 1.4e-06 28.1 3.6 5.4 6 0 0 6 6 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|116754868|ref|YP_843986.1| - 4.1e-14 53.3 19.1 0.00036 21.4 0.3 4.7 4 0 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|116754868|ref|YP_843986.1| - 4.8e-14 51.5 46.1 4.4e-05 23.3 3.2 5.4 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|116754868|ref|YP_843986.1| - 5.5e-14 52.0 32.7 2.9e-06 27.3 13.7 4.4 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754868|ref|YP_843986.1| - 4e-12 46.1 43.3 3.6e-10 39.8 10.5 4.8 5 0 0 5 5 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116754868|ref|YP_843986.1| - 5.8e-12 45.6 34.7 6.1e-07 29.5 12.0 3.3 3 0 0 3 3 2 2 4Fe-4S dicluster domain DAO PF01266.24 gi|116754868|ref|YP_843986.1| - 2.7e-10 40.4 2.2 1.5e-06 28.1 1.5 2.7 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|116754868|ref|YP_843986.1| - 6.6e-10 38.9 0.4 1.2e-09 38.1 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|116754868|ref|YP_843986.1| - 6.9e-08 32.0 0.9 1.3e-07 31.1 0.9 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_15 PF13459.6 gi|116754868|ref|YP_843986.1| - 1e-06 29.4 28.4 0.0091 16.7 2.0 5.0 4 1 0 4 4 4 3 4Fe-4S single cluster domain NAD_binding_8 PF13450.6 gi|116754868|ref|YP_843986.1| - 1e-06 28.9 0.2 3e-06 27.4 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_8 PF13183.6 gi|116754868|ref|YP_843986.1| - 3.9e-06 27.2 27.8 0.0053 17.2 0.0 4.8 4 1 1 5 5 4 3 4Fe-4S dicluster domain Pyr_redox PF00070.27 gi|116754868|ref|YP_843986.1| - 9.5e-06 26.1 0.3 4.2e-05 24.0 0.3 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|116754868|ref|YP_843986.1| - 1.2e-05 24.6 0.2 1.2e-05 24.6 0.2 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Fer4_17 PF13534.6 gi|116754868|ref|YP_843986.1| - 1.6e-05 25.3 29.0 0.11 13.0 0.4 4.5 3 1 1 4 4 4 3 4Fe-4S dicluster domain Thi4 PF01946.17 gi|116754868|ref|YP_843986.1| - 2.7e-05 23.5 0.0 5.5e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|116754868|ref|YP_843986.1| - 4.5e-05 22.9 0.7 8.7e-05 21.9 0.7 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|116754868|ref|YP_843986.1| - 0.00014 20.7 0.3 0.00022 20.1 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein Fer4_4 PF12800.7 gi|116754868|ref|YP_843986.1| - 0.00026 21.3 44.5 0.0046 17.4 3.9 5.2 5 0 0 5 5 4 3 4Fe-4S binding domain NAD_binding_9 PF13454.6 gi|116754868|ref|YP_843986.1| - 0.00037 20.5 1.2 2 8.4 0.3 3.3 3 0 0 3 3 3 2 FAD-NAD(P)-binding Fer4_13 PF13370.6 gi|116754868|ref|YP_843986.1| - 0.001 19.6 36.3 0.0057 17.2 3.3 4.3 4 0 0 4 4 3 3 4Fe-4S single cluster domain of Ferredoxin I Lycopene_cycl PF05834.12 gi|116754868|ref|YP_843986.1| - 0.002 17.2 0.6 0.0053 15.8 0.4 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|116754868|ref|YP_843986.1| - 0.0029 17.0 0.9 0.0061 15.9 0.3 1.9 2 0 0 2 2 1 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|116754868|ref|YP_843986.1| - 0.003 16.9 0.0 0.0079 15.5 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|116754868|ref|YP_843986.1| - 0.0036 16.6 0.1 0.0081 15.5 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Fer4_22 PF17179.4 gi|116754868|ref|YP_843986.1| - 0.03 15.2 26.6 0.2 12.5 0.9 4.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|116754868|ref|YP_843986.1| - 0.038 14.9 3.3 0.038 14.9 3.3 6.0 7 0 0 7 7 4 0 4Fe-4S binding domain NAD_binding_7 PF13241.6 gi|116754868|ref|YP_843986.1| - 0.092 13.2 0.8 3.2 8.3 0.2 3.3 3 1 0 3 3 3 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|116754868|ref|YP_843986.1| - 0.17 10.7 0.5 0.48 9.2 0.3 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Fer4_18 PF13746.6 gi|116754868|ref|YP_843986.1| - 2.9 8.1 21.3 0.037 14.2 4.1 3.4 3 0 0 3 3 2 0 4Fe-4S dicluster domain Rpr2 PF04032.16 gi|116754870|ref|YP_843988.1| - 7.4e-09 35.8 0.5 2.2e-08 34.2 0.5 1.7 1 1 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|116754870|ref|YP_843988.1| - 0.0039 17.2 0.1 0.005 16.8 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon RNHCP PF12647.7 gi|116754870|ref|YP_843988.1| - 0.0087 16.0 0.4 0.011 15.7 0.4 1.2 1 0 0 1 1 1 1 RNHCP domain Zn_ribbon_SprT PF17283.2 gi|116754870|ref|YP_843988.1| - 0.11 12.5 3.7 0.14 12.1 0.1 2.2 1 1 0 2 2 2 0 SprT-like zinc ribbon domain zf-TFIIB PF13453.6 gi|116754870|ref|YP_843988.1| - 0.42 10.0 2.9 6 6.3 3.2 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-Sec23_Sec24 PF04810.15 gi|116754870|ref|YP_843988.1| - 0.49 10.5 3.6 7.4 6.7 3.6 2.0 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger Ham1p_like PF01725.16 gi|116754872|ref|YP_843990.1| - 9e-47 159.4 0.0 1e-46 159.3 0.0 1.0 1 0 0 1 1 1 1 Ham1 family S4 PF01479.25 gi|116754873|ref|YP_843991.1| - 4.9e-13 48.6 0.4 9.6e-13 47.6 0.4 1.5 1 0 0 1 1 1 1 S4 domain FtsJ PF01728.19 gi|116754873|ref|YP_843991.1| - 5.9e-11 42.8 0.0 8.6e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|116754873|ref|YP_843991.1| - 2.7e-07 31.2 0.0 5.4e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|116754873|ref|YP_843991.1| - 2.1e-05 25.1 0.0 3.9e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.6 gi|116754873|ref|YP_843991.1| - 4.7e-05 23.1 0.1 0.00011 21.9 0.1 1.6 1 0 0 1 1 1 1 S4 domain Methyltransf_23 PF13489.6 gi|116754873|ref|YP_843991.1| - 0.00054 19.8 0.0 0.0036 17.2 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|116754873|ref|YP_843991.1| - 0.00058 19.7 0.0 0.0017 18.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain ThiS PF02597.20 gi|116754873|ref|YP_843991.1| - 0.0019 18.8 0.0 0.0085 16.7 0.0 2.0 2 1 0 2 2 2 1 ThiS family Methyltransf_12 PF08242.12 gi|116754873|ref|YP_843991.1| - 0.0086 16.8 0.0 0.02 15.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|116754873|ref|YP_843991.1| - 0.22 10.4 0.0 0.34 9.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|116754873|ref|YP_843991.1| - 0.29 10.5 0.0 0.4 10.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Ion_trans PF00520.31 gi|116754874|ref|YP_843992.1| - 6.9e-18 64.8 25.0 9.8e-18 64.3 25.0 1.1 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|116754874|ref|YP_843992.1| - 8.4e-16 57.7 5.8 8.4e-16 57.7 5.8 2.9 3 0 0 3 3 3 1 Ion channel DZR PF12773.7 gi|116754874|ref|YP_843992.1| - 0.0073 16.3 0.7 0.012 15.6 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|116754874|ref|YP_843992.1| - 0.028 14.3 2.2 4.5 7.3 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|116754874|ref|YP_843992.1| - 0.094 12.2 1.3 0.15 11.5 1.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|116754874|ref|YP_843992.1| - 0.13 12.1 1.6 0.32 10.8 1.6 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Vut_1 PF02592.15 gi|116754875|ref|YP_843993.1| - 4.7e-42 143.8 9.6 4.7e-42 143.8 9.6 1.7 2 0 0 2 2 2 1 Putative vitamin uptake transporter DUF4407 PF14362.6 gi|116754875|ref|YP_843993.1| - 0.33 10.3 2.4 0.65 9.3 2.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FMN_red PF03358.15 gi|116754876|ref|YP_843994.1| - 3.7e-28 98.2 0.0 4.9e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|116754876|ref|YP_843994.1| - 1.4e-14 54.3 0.0 1.9e-14 53.8 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold PUMA PF15826.5 gi|116754876|ref|YP_843994.1| - 0.14 12.3 0.1 0.3 11.3 0.1 1.5 1 0 0 1 1 1 0 Bcl-2-binding component 3, p53 upregulated modulator of apoptosis IGPD PF00475.18 gi|116754877|ref|YP_843995.1| - 7.9e-40 136.5 0.0 1.1e-39 136.1 0.0 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Meth_synt_2 PF01717.18 gi|116754878|ref|YP_843996.1| - 0.014 14.7 0.0 2 7.6 0.0 2.3 2 0 0 2 2 2 0 Cobalamin-independent synthase, Catalytic domain mTERF PF02536.14 gi|116754878|ref|YP_843996.1| - 0.16 10.9 0.0 0.26 10.2 0.0 1.3 1 0 0 1 1 1 0 mTERF PALP PF00291.25 gi|116754879|ref|YP_843997.1| - 4.1e-27 95.4 0.0 1.4e-26 93.6 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 gi|116754879|ref|YP_843997.1| - 3.6e-23 81.6 0.0 1.4e-22 79.6 0.0 2.1 2 0 0 2 2 2 1 Threonine synthase N terminus Metallophos_2 PF12850.7 gi|116754880|ref|YP_843998.1| - 4.4e-30 105.0 0.1 5.1e-30 104.8 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|116754880|ref|YP_843998.1| - 1.7e-06 28.7 4.9 1.2e-05 25.9 0.7 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|116754880|ref|YP_843998.1| - 0.024 14.0 0.3 0.11 11.9 0.2 1.9 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily DNA_binding_1 PF01035.20 gi|116754881|ref|YP_843999.1| - 2.7e-29 101.1 0.0 3.9e-29 100.6 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF4277 PF14104.6 gi|116754882|ref|YP_844000.1| - 6.4e-12 45.8 0.0 6.7e-12 45.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) Peripla_BP_2 PF01497.18 gi|116754883|ref|YP_844001.1| - 5.7e-27 94.8 0.0 7.5e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|116754884|ref|YP_844002.1| - 5.9e-25 88.2 0.2 9.8e-25 87.5 0.2 1.3 1 0 0 1 1 1 1 Periplasmic binding protein CheY-binding PF09078.11 gi|116754884|ref|YP_844002.1| - 0.026 14.6 0.0 0.05 13.7 0.0 1.5 1 0 0 1 1 1 0 CheY binding DDE_Tnp_1_5 PF13737.6 gi|116754885|ref|YP_844003.1| - 8.2e-33 113.1 0.0 3.2e-31 107.9 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|116754885|ref|YP_844003.1| - 9e-21 74.5 0.1 1.6e-20 73.7 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain Peripla_BP_2 PF01497.18 gi|116754886|ref|YP_844004.1| - 7.5e-22 78.1 0.1 1.1e-21 77.5 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|116754886|ref|YP_844004.1| - 0.035 14.3 6.0 0.035 14.3 6.0 1.8 2 0 0 2 2 2 0 Dockerin type I domain Heme_oxygenase PF01126.20 gi|116754886|ref|YP_844004.1| - 0.16 11.7 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 Heme oxygenase Peripla_BP_2 PF01497.18 gi|116754887|ref|YP_844005.1| - 1.5e-25 90.1 0.0 2.3e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|116754887|ref|YP_844005.1| - 0.0012 19.0 1.7 0.0026 17.9 1.7 1.6 1 0 0 1 1 1 1 Dockerin type I domain HlyD_3 PF13437.6 gi|116754887|ref|YP_844005.1| - 0.01 16.5 0.1 0.021 15.5 0.1 1.4 1 0 0 1 1 1 0 HlyD family secretion protein CobN-Mg_chel PF02514.16 gi|116754888|ref|YP_844006.1| - 0 1269.8 0.0 0 1269.6 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF169 PF02596.15 gi|116754889|ref|YP_844007.1| - 3.5e-41 141.4 0.4 4.3e-41 141.1 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 DUF4277 PF14104.6 gi|116754890|ref|YP_844008.1| - 7.3e-44 148.6 0.0 1.7e-43 147.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|116754890|ref|YP_844008.1| - 3.3e-12 46.5 0.4 3.9e-11 43.0 0.4 2.1 1 1 0 1 1 1 1 Transposase DDE domain AIRC PF00731.20 gi|116754891|ref|YP_844009.1| - 1.6e-17 63.5 5.3 1.8e-17 63.3 4.0 1.7 2 0 0 2 2 2 1 AIR carboxylase SdrD_B PF17210.3 gi|116754892|ref|YP_844010.1| - 7.4e-93 306.4 44.0 4.2e-15 56.0 0.3 7.9 7 0 0 7 7 7 7 SdrD B-like domain CarboxypepD_reg PF13620.6 gi|116754892|ref|YP_844010.1| - 3.9e-52 174.4 41.1 7.8e-08 32.5 1.3 11.0 8 1 0 8 8 8 7 Carboxypeptidase regulatory-like domain Big_9 PF17963.1 gi|116754892|ref|YP_844010.1| - 6.4e-30 103.8 128.5 0.0018 19.0 1.5 17.6 17 3 2 19 19 17 12 Bacterial Ig domain SpaA PF17802.1 gi|116754892|ref|YP_844010.1| - 1.5e-27 95.8 37.4 5.3e-05 23.5 1.2 8.8 7 2 1 9 9 9 7 Prealbumin-like fold domain Cadherin_5 PF17892.1 gi|116754892|ref|YP_844010.1| - 5.1e-21 74.5 62.9 0.09 12.8 0.1 13.3 14 0 0 14 14 14 10 Cadherin-like domain Big_7 PF17957.1 gi|116754892|ref|YP_844010.1| - 4.2e-20 72.3 143.5 0.0073 17.1 1.9 17.1 16 2 2 18 18 14 10 Bacterial Ig domain Mannosidase_ig PF17786.1 gi|116754892|ref|YP_844010.1| - 2.6e-15 56.8 34.3 2.8 8.6 0.1 11.7 12 0 0 12 12 11 4 Mannosidase Ig/CBM-like domain CarbopepD_reg_2 PF13715.6 gi|116754892|ref|YP_844010.1| - 1.4e-14 53.8 19.7 0.027 14.4 0.4 8.2 8 0 0 8 8 8 5 CarboxypepD_reg-like domain DUF2012 PF09430.10 gi|116754892|ref|YP_844010.1| - 1.5e-13 50.9 0.1 0.73 9.9 0.1 7.2 6 1 1 7 7 7 3 Protein of unknown function (DUF2012) Big_3_3 PF13750.6 gi|116754892|ref|YP_844010.1| - 2.9e-08 33.5 10.5 14 5.3 0.0 10.3 13 0 0 13 13 13 0 Bacterial Ig-like domain (group 3) Dioxygenase_C PF00775.21 gi|116754892|ref|YP_844010.1| - 3.9e-06 26.4 8.0 18 4.7 0.0 7.7 7 0 0 7 7 7 0 Dioxygenase fn3_3 PF14686.6 gi|116754892|ref|YP_844010.1| - 9.8e-06 25.3 36.9 0.042 13.6 1.9 9.2 9 0 0 9 9 9 3 Polysaccharide lyase family 4, domain II DUF1416 PF07210.12 gi|116754892|ref|YP_844010.1| - 1.7e-05 24.6 2.8 3.9 7.4 0.0 7.2 6 0 0 6 6 6 1 Protein of unknown function (DUF1416) Y_Y_Y PF07495.13 gi|116754892|ref|YP_844010.1| - 0.00011 22.1 32.2 2.1 8.4 0.2 10.5 12 0 0 12 12 10 1 Y_Y_Y domain DUF3324 PF11797.8 gi|116754892|ref|YP_844010.1| - 0.14 12.2 0.0 17 5.4 0.0 4.0 4 0 0 4 4 4 0 Protein of unknown function C-terminal (DUF3324) DUF2846 PF11008.8 gi|116754892|ref|YP_844010.1| - 0.2 11.7 1.0 1.4e+02 2.6 0.0 4.9 5 0 0 5 5 5 0 Protein of unknown function (DUF2846) PDZ_5 PF17817.1 gi|116754892|ref|YP_844010.1| - 1.4 9.2 7.6 2.5e+02 2.0 0.0 5.6 9 0 0 9 9 4 0 PDZ domain AAA_16 PF13191.6 gi|116754893|ref|YP_844011.1| - 7e-11 42.8 0.2 3e-08 34.3 0.0 3.1 2 1 0 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.11 gi|116754893|ref|YP_844011.1| - 6.4e-09 35.7 0.1 2.6e-08 33.7 0.1 2.1 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|116754893|ref|YP_844011.1| - 1.5e-07 31.8 0.0 3.1e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|116754893|ref|YP_844011.1| - 0.001 19.5 0.0 0.0024 18.3 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|116754893|ref|YP_844011.1| - 0.0023 17.5 0.0 0.0041 16.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_11 PF13086.6 gi|116754893|ref|YP_844011.1| - 0.0029 17.4 0.0 0.0057 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|116754893|ref|YP_844011.1| - 0.0078 15.9 0.0 0.035 13.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain PadR PF03551.14 gi|116754893|ref|YP_844011.1| - 0.0098 15.8 0.2 0.026 14.5 0.1 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family TIP49_C PF17856.1 gi|116754893|ref|YP_844011.1| - 0.022 14.9 0.5 1.1 9.4 0.0 3.3 4 0 0 4 4 4 0 TIP49 AAA-lid domain DUF815 PF05673.13 gi|116754893|ref|YP_844011.1| - 0.031 13.5 0.0 0.55 9.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) HTH_AraC PF00165.23 gi|116754893|ref|YP_844011.1| - 0.063 13.4 0.1 0.18 11.9 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family AAA_19 PF13245.6 gi|116754893|ref|YP_844011.1| - 0.11 12.8 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|116754893|ref|YP_844011.1| - 0.15 11.2 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.15 gi|116754893|ref|YP_844011.1| - 0.18 11.7 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 NTPase DUF2075 PF09848.9 gi|116754893|ref|YP_844011.1| - 0.18 11.0 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SRP54 PF00448.22 gi|116754893|ref|YP_844011.1| - 0.2 11.2 0.0 0.34 10.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF2099 PF09872.9 gi|116754894|ref|YP_844012.1| - 6.5e-109 363.1 0.1 7.5e-109 362.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) tRNA_SAD PF07973.14 gi|116754895|ref|YP_844013.1| - 2.6e-15 56.2 0.7 4.4e-15 55.5 0.7 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|116754895|ref|YP_844013.1| - 5.2e-12 45.1 0.0 6.9e-12 44.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) RNase_II_C_S1 PF18614.1 gi|116754895|ref|YP_844013.1| - 0.022 14.7 2.1 4.7 7.2 0.1 3.5 4 0 0 4 4 4 0 RNase II-type exonuclease C-terminal S1 domain ATP-synt_D PF01813.17 gi|116754896|ref|YP_844014.1| - 1.3e-55 188.3 6.7 1.3e-55 188.3 6.7 1.3 2 0 0 2 2 2 1 ATP synthase subunit D ATP-synt_ab PF00006.25 gi|116754897|ref|YP_844015.1| - 5.7e-60 202.6 0.0 7.5e-60 202.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|116754897|ref|YP_844015.1| - 1.7e-12 47.6 2.2 1.7e-12 47.6 2.2 2.2 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|116754897|ref|YP_844015.1| - 0.00051 20.1 2.8 0.00067 19.8 1.4 2.0 2 1 0 2 2 2 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|116754898|ref|YP_844016.1| - 5e-92 307.3 0.0 6.6e-92 307.0 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|116754898|ref|YP_844016.1| - 2.6e-41 140.3 0.1 4.7e-41 139.4 0.1 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|116754898|ref|YP_844016.1| - 2.6e-11 43.9 1.3 8.4e-11 42.2 1.3 2.0 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|116754898|ref|YP_844016.1| - 0.00076 19.4 1.0 0.0098 15.8 0.0 2.3 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain AAA_22 PF13401.6 gi|116754898|ref|YP_844016.1| - 0.015 15.6 0.0 0.046 14.0 0.0 1.7 1 1 0 2 2 2 0 AAA domain Biotin_lipoyl PF00364.22 gi|116754898|ref|YP_844016.1| - 0.015 15.1 0.6 0.045 13.6 0.6 1.8 1 0 0 1 1 1 0 Biotin-requiring enzyme PTS_EIIA_1 PF00358.20 gi|116754898|ref|YP_844016.1| - 0.041 13.7 0.0 0.078 12.7 0.0 1.4 1 0 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Peptidase_M23 PF01551.22 gi|116754898|ref|YP_844016.1| - 0.043 14.0 0.1 0.37 11.0 0.0 2.4 2 0 0 2 2 2 0 Peptidase family M23 ATP-synt_F PF01990.17 gi|116754899|ref|YP_844017.1| - 3.1e-17 62.7 0.2 3.5e-17 62.5 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit THF_DHG_CYH PF00763.23 gi|116754899|ref|YP_844017.1| - 0.05 13.9 0.2 0.11 12.7 0.1 1.6 1 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DUF1059 PF06348.11 gi|116754899|ref|YP_844017.1| - 0.26 11.6 0.6 25 5.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1059) vATP-synt_AC39 PF01992.16 gi|116754900|ref|YP_844018.1| - 7.1e-72 242.7 0.9 7.9e-72 242.6 0.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.18 gi|116754901|ref|YP_844019.1| - 5.8e-18 65.0 14.6 7.3e-16 58.2 14.6 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF3826 PF12875.7 gi|116754901|ref|YP_844019.1| - 0.042 14.0 2.0 0.042 14.0 2.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3826) CENP-K PF11802.8 gi|116754901|ref|YP_844019.1| - 0.081 12.5 5.7 0.11 12.1 5.7 1.1 1 0 0 1 1 1 0 Centromere-associated protein K GnsAB_toxin PF08178.11 gi|116754901|ref|YP_844019.1| - 0.083 12.8 0.9 0.083 12.8 0.9 2.3 2 1 1 3 3 3 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system T2SSM PF04612.12 gi|116754901|ref|YP_844019.1| - 0.16 12.0 1.9 0.22 11.6 1.9 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M ATP-synt_B PF00430.18 gi|116754901|ref|YP_844019.1| - 0.78 9.8 13.4 1.5 8.9 13.4 1.4 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) DUF1451 PF07295.11 gi|116754901|ref|YP_844019.1| - 0.91 9.6 6.3 1.3 9.1 6.1 1.4 1 1 0 1 1 1 0 Zinc-ribbon containing domain FliH PF02108.16 gi|116754901|ref|YP_844019.1| - 1.1 9.3 8.1 1.7 8.7 5.4 2.3 1 1 1 2 2 2 0 Flagellar assembly protein FliH ATP-synt_C PF00137.21 gi|116754902|ref|YP_844020.1| - 1.6e-11 44.3 12.4 1.6e-11 44.3 12.4 1.6 1 1 1 2 2 2 1 ATP synthase subunit C V_ATPase_I PF01496.19 gi|116754903|ref|YP_844021.1| - 3.2e-31 108.1 9.2 5.1e-20 71.0 0.4 2.8 2 1 1 3 3 3 2 V-type ATPase 116kDa subunit family DUF5082 PF16888.5 gi|116754903|ref|YP_844021.1| - 0.0001 22.6 0.2 0.063 13.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF5082) UPF0242 PF06785.11 gi|116754903|ref|YP_844021.1| - 0.00011 22.3 0.3 0.0022 18.1 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus Prefoldin_2 PF01920.20 gi|116754903|ref|YP_844021.1| - 0.00022 21.1 1.3 0.0091 15.9 0.2 2.5 2 0 0 2 2 2 1 Prefoldin subunit TMF_TATA_bd PF12325.8 gi|116754903|ref|YP_844021.1| - 0.0024 18.1 1.9 0.22 11.7 0.1 2.3 2 0 0 2 2 2 1 TATA element modulatory factor 1 TATA binding Spc24 PF08286.11 gi|116754903|ref|YP_844021.1| - 0.01 16.0 2.8 0.2 11.9 0.4 2.3 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Ax_dynein_light PF10211.9 gi|116754903|ref|YP_844021.1| - 0.022 14.7 0.3 0.022 14.7 0.3 1.7 2 0 0 2 2 2 0 Axonemal dynein light chain APG6_N PF17675.1 gi|116754903|ref|YP_844021.1| - 0.033 14.7 2.2 0.046 14.3 0.3 1.9 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF4337 PF14235.6 gi|116754903|ref|YP_844021.1| - 0.033 14.3 10.0 0.19 11.8 0.4 2.9 3 0 0 3 3 2 0 Domain of unknown function (DUF4337) bZIP_1 PF00170.21 gi|116754903|ref|YP_844021.1| - 0.093 12.8 1.0 0.26 11.4 1.0 1.7 1 0 0 1 1 1 0 bZIP transcription factor TPR_MLP1_2 PF07926.12 gi|116754903|ref|YP_844021.1| - 0.097 12.7 2.7 0.15 12.2 0.2 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein KASH_CCD PF14662.6 gi|116754903|ref|YP_844021.1| - 0.11 12.3 1.1 0.14 11.9 0.1 1.7 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH FliD_C PF07195.12 gi|116754903|ref|YP_844021.1| - 0.14 11.5 0.0 4.8 6.5 0.0 2.2 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus ABC_tran_CTD PF16326.5 gi|116754903|ref|YP_844021.1| - 0.2 11.9 9.4 0.25 11.6 2.0 3.3 3 0 0 3 3 3 0 ABC transporter C-terminal domain DUF4140 PF13600.6 gi|116754903|ref|YP_844021.1| - 0.22 12.0 0.9 5.6 7.5 0.1 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DivIC PF04977.15 gi|116754903|ref|YP_844021.1| - 0.4 10.5 5.2 1.3 8.8 1.6 2.6 2 0 0 2 2 2 0 Septum formation initiator Prefoldin PF02996.17 gi|116754903|ref|YP_844021.1| - 0.66 9.9 4.2 1.3 9.0 1.1 2.3 2 0 0 2 2 2 0 Prefoldin subunit Myc-LZ PF02344.15 gi|116754903|ref|YP_844021.1| - 1.5 9.0 3.8 2.6 8.2 3.8 1.4 1 0 0 1 1 1 0 Myc leucine zipper domain DUF4407 PF14362.6 gi|116754903|ref|YP_844021.1| - 1.6 8.0 3.7 5.6 6.2 0.0 3.1 3 0 0 3 3 2 0 Domain of unknown function (DUF4407) V-ATPase_G_2 PF16999.5 gi|116754904|ref|YP_844022.1| - 3.2e-07 30.7 16.7 5.1e-07 30.1 16.7 1.3 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit V-ATPase_G PF03179.15 gi|116754904|ref|YP_844022.1| - 2e-06 28.3 11.9 2.4e-06 28.0 11.9 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|116754904|ref|YP_844022.1| - 0.0015 18.7 19.1 0.0029 17.7 19.0 1.5 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) Muted PF14942.6 gi|116754904|ref|YP_844022.1| - 0.021 15.1 4.0 0.028 14.7 4.0 1.2 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein DUF5446 PF17522.2 gi|116754904|ref|YP_844022.1| - 0.073 13.3 1.2 0.13 12.5 0.8 1.7 1 1 1 2 2 2 0 Family of unknown function (DUF5446) bMG3 PF11974.8 gi|116754904|ref|YP_844022.1| - 0.11 12.5 1.5 0.15 12.1 1.5 1.1 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain GPW_gp25 PF04965.14 gi|116754904|ref|YP_844022.1| - 0.13 12.0 0.9 0.26 11.1 0.9 1.7 1 1 0 1 1 1 0 Gene 25-like lysozyme Nuc_N PF14448.6 gi|116754904|ref|YP_844022.1| - 0.18 11.7 3.6 1.4 8.8 0.7 2.3 2 0 0 2 2 2 0 Nuclease N terminal DivIVA PF05103.13 gi|116754904|ref|YP_844022.1| - 3.9 7.6 13.3 7.1 6.7 13.3 1.6 1 1 0 1 1 1 0 DivIVA protein RuBisCO_large PF00016.20 gi|116754905|ref|YP_844023.1| - 4.1e-88 295.4 1.3 6.1e-88 294.9 1.3 1.3 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|116754905|ref|YP_844023.1| - 1.6e-22 79.9 0.0 3.3e-22 78.9 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain PEP_mutase PF13714.6 gi|116754905|ref|YP_844023.1| - 0.046 13.2 0.7 0.2 11.1 0.3 2.0 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Ribosomal_S13 PF00416.22 gi|116754907|ref|YP_844025.1| - 4.4e-39 133.8 1.8 5.3e-39 133.5 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.25 gi|116754908|ref|YP_844026.1| - 2.2e-17 62.5 1.4 3.7e-17 61.8 0.2 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S11 PF00411.19 gi|116754909|ref|YP_844027.1| - 8.9e-46 154.8 2.9 1.3e-45 154.3 2.9 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|116754909|ref|YP_844027.1| - 0.047 14.1 0.1 0.065 13.6 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RNA_pol_A_bac PF01000.26 gi|116754910|ref|YP_844028.1| - 1.1e-20 74.1 0.0 3.5e-20 72.4 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|116754910|ref|YP_844028.1| - 4.3e-18 64.5 0.0 5.8e-18 64.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.27 gi|116754910|ref|YP_844028.1| - 3.6e-08 32.9 11.3 0.00013 21.6 3.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116754910|ref|YP_844028.1| - 1.9e-07 31.1 9.4 1.9e-07 31.1 9.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116754910|ref|YP_844028.1| - 5.5e-07 30.4 5.0 0.0003 21.6 0.4 2.7 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|116754910|ref|YP_844028.1| - 7.5e-07 29.2 8.2 7.5e-07 29.2 8.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754910|ref|YP_844028.1| - 5.7e-06 26.8 9.0 5.7e-06 26.8 9.0 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|116754910|ref|YP_844028.1| - 0.00013 22.3 9.2 0.058 13.9 5.4 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116754910|ref|YP_844028.1| - 0.00076 19.5 2.6 0.00076 19.5 2.6 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|116754910|ref|YP_844028.1| - 0.0024 18.4 16.0 0.0036 17.8 0.9 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754910|ref|YP_844028.1| - 0.0038 17.3 9.8 0.0038 17.3 9.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|116754910|ref|YP_844028.1| - 0.0079 16.6 1.9 0.0079 16.6 1.9 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|116754910|ref|YP_844028.1| - 0.008 16.2 4.2 0.008 16.2 4.2 3.1 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|116754910|ref|YP_844028.1| - 0.013 16.4 6.5 0.013 16.4 6.5 3.0 3 1 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|116754910|ref|YP_844028.1| - 0.028 14.6 10.7 0.073 13.3 10.7 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|116754910|ref|YP_844028.1| - 4.6 8.1 11.3 6.8 7.5 1.2 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain TPR_1 PF00515.28 gi|116754911|ref|YP_844029.1| - 9.2e-43 142.4 14.8 3.1e-10 39.4 0.6 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|116754911|ref|YP_844029.1| - 1.6e-36 121.4 15.7 2.1e-08 33.6 0.7 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|116754911|ref|YP_844029.1| - 1.1e-30 105.1 11.2 1.7e-10 40.4 3.4 5.1 1 1 4 5 5 5 5 TPR repeat TPR_16 PF13432.6 gi|116754911|ref|YP_844029.1| - 5.6e-26 90.9 9.8 8.6e-09 35.9 2.4 4.0 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|116754911|ref|YP_844029.1| - 1.3e-23 81.1 13.4 8.3e-05 22.5 0.1 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|116754911|ref|YP_844029.1| - 7.9e-21 72.9 12.8 1.7e-07 31.1 0.5 5.7 6 0 0 6 6 5 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|116754911|ref|YP_844029.1| - 5.7e-19 68.4 14.5 1.2e-05 25.8 3.7 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|116754911|ref|YP_844029.1| - 8.8e-18 63.5 12.8 2.3e-06 27.9 0.4 6.1 1 1 5 6 6 6 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|116754911|ref|YP_844029.1| - 2.2e-15 56.5 13.9 0.00037 20.6 0.2 3.9 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|116754911|ref|YP_844029.1| - 4.8e-15 55.6 15.2 1.4e-06 28.5 0.2 5.2 2 2 2 5 5 5 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|116754911|ref|YP_844029.1| - 1.2e-13 51.1 7.2 1.5e-05 25.1 0.1 3.1 1 1 3 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|116754911|ref|YP_844029.1| - 1.7e-10 40.2 7.9 0.42 10.7 0.0 6.1 5 1 1 6 6 6 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|116754911|ref|YP_844029.1| - 2.4e-07 31.0 14.8 0.11 13.2 0.2 5.9 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|116754911|ref|YP_844029.1| - 3.1e-07 30.0 14.0 0.022 14.6 0.8 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|116754911|ref|YP_844029.1| - 1.4e-06 27.6 0.4 0.043 12.7 0.0 3.0 2 1 1 3 3 3 2 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|116754911|ref|YP_844029.1| - 2.3e-06 27.6 6.8 0.26 11.4 0.1 3.6 3 2 0 3 3 3 3 Fis1 C-terminal tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|116754911|ref|YP_844029.1| - 1.2e-05 25.3 2.0 0.11 12.5 0.0 3.2 1 1 2 3 3 3 1 Putative TPR-like repeat Coatomer_E PF04733.14 gi|116754911|ref|YP_844029.1| - 6e-05 22.6 2.9 0.094 12.1 0.1 2.9 1 1 2 3 3 3 2 Coatomer epsilon subunit TPR_3 PF07720.12 gi|116754911|ref|YP_844029.1| - 0.00068 19.6 1.6 0.69 10.0 0.2 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|116754911|ref|YP_844029.1| - 0.00088 19.7 3.3 0.21 12.0 0.1 3.1 2 1 0 3 3 3 1 Alkyl sulfatase dimerisation FAT PF02259.23 gi|116754911|ref|YP_844029.1| - 0.0032 16.8 1.4 0.21 10.8 0.2 2.5 1 1 1 2 2 2 1 FAT domain DUF3856 PF12968.7 gi|116754911|ref|YP_844029.1| - 0.0034 17.5 3.5 1.3 9.1 0.4 4.3 1 1 2 3 3 3 1 Domain of Unknown Function (DUF3856) PPTA PF01239.22 gi|116754911|ref|YP_844029.1| - 0.0049 16.5 4.1 4.8 7.1 0.1 4.0 4 0 0 4 4 4 1 Protein prenyltransferase alpha subunit repeat TPR_4 PF07721.14 gi|116754911|ref|YP_844029.1| - 0.016 15.8 0.7 47 5.0 0.0 4.8 5 0 0 5 5 5 0 Tetratricopeptide repeat BTAD PF03704.17 gi|116754911|ref|YP_844029.1| - 0.028 14.8 7.3 2.1 8.8 1.3 3.2 1 1 0 2 2 2 0 Bacterial transcriptional activator domain Rapsyn_N PF10579.9 gi|116754911|ref|YP_844029.1| - 0.092 12.9 0.1 23 5.2 0.0 2.6 2 0 0 2 2 2 0 Rapsyn N-terminal myristoylation and linker region MIT PF04212.18 gi|116754911|ref|YP_844029.1| - 0.15 12.1 8.7 6.1 7.0 0.0 4.1 5 0 0 5 5 4 0 MIT (microtubule interacting and transport) domain TPP_enzyme_N PF02776.18 gi|116754912|ref|YP_844030.1| - 1e-09 38.2 0.0 1.3e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|116754913|ref|YP_844031.1| - 1.5e-19 70.3 0.0 3.7e-19 69.0 0.0 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 gi|116754913|ref|YP_844031.1| - 0.24 10.3 0.0 0.32 9.9 0.0 1.1 1 0 0 1 1 1 0 Dehydrogenase E1 component HcyBio PF01837.16 gi|116754914|ref|YP_844032.1| - 2.1e-105 352.4 0.0 2.3e-105 352.3 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4_10 PF13237.6 gi|116754914|ref|YP_844032.1| - 5.1e-06 26.5 3.8 0.048 13.8 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754914|ref|YP_844032.1| - 3.3e-05 24.4 2.5 0.19 12.3 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116754914|ref|YP_844032.1| - 4.2e-05 23.4 12.6 0.0067 16.5 4.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|116754914|ref|YP_844032.1| - 0.0022 17.7 12.8 0.0065 16.2 1.3 3.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|116754914|ref|YP_844032.1| - 0.0024 18.4 0.1 0.0024 18.4 0.1 3.0 2 1 1 3 3 3 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|116754914|ref|YP_844032.1| - 0.011 16.5 0.2 0.011 16.5 0.2 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|116754914|ref|YP_844032.1| - 0.013 16.0 1.0 0.46 11.0 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754914|ref|YP_844032.1| - 0.036 14.2 11.8 0.045 13.8 1.7 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116754914|ref|YP_844032.1| - 0.052 13.7 8.7 1.3 9.3 10.5 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|116754914|ref|YP_844032.1| - 0.059 13.5 10.4 0.18 11.9 0.8 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|116754914|ref|YP_844032.1| - 0.17 12.1 2.1 0.35 11.1 2.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116754914|ref|YP_844032.1| - 6.4 7.8 12.3 3.8 8.5 2.8 2.5 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain NosD PF05048.13 gi|116754915|ref|YP_844033.1| - 1.1e-26 93.5 22.7 8.1e-26 90.8 22.7 2.1 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|116754915|ref|YP_844033.1| - 5e-18 65.5 17.8 5e-18 65.5 17.8 2.4 2 1 1 3 3 3 1 Right handed beta helix region ZU5 PF00791.20 gi|116754915|ref|YP_844033.1| - 5.2e-05 23.5 0.0 0.00011 22.4 0.0 1.5 1 0 0 1 1 1 1 ZU5 domain DUF2135 PF09906.9 gi|116754915|ref|YP_844033.1| - 0.034 14.5 0.2 0.034 14.5 0.2 2.4 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2135) BacA PF02673.18 gi|116754918|ref|YP_844036.1| - 7.6e-52 176.6 13.4 9.4e-52 176.3 13.4 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA PrgI PF12666.7 gi|116754918|ref|YP_844036.1| - 6.7 7.5 9.4 5.1 7.9 0.1 3.3 2 1 1 3 3 3 0 PrgI family protein HSP20 PF00011.21 gi|116754920|ref|YP_844038.1| - 2.5e-17 62.9 0.7 3.7e-17 62.3 0.7 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|116754920|ref|YP_844038.1| - 1.3e-13 50.3 0.4 2e-13 49.7 0.4 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|116754920|ref|YP_844038.1| - 1.9e-07 32.0 0.0 3e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 CS domain PIH1_CS PF18201.1 gi|116754920|ref|YP_844038.1| - 0.001 19.5 0.0 0.0016 18.8 0.0 1.4 1 1 0 1 1 1 1 PIH1 CS-like domain GvpH PF05455.11 gi|116754920|ref|YP_844038.1| - 0.021 14.9 0.1 0.031 14.3 0.1 1.3 1 0 0 1 1 1 0 GvpH DHBP_synthase PF00926.19 gi|116754921|ref|YP_844039.1| - 1.1e-88 295.8 0.7 1.5e-88 295.4 0.7 1.2 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.20 gi|116754921|ref|YP_844039.1| - 5.6e-75 250.4 0.0 1.4e-74 249.1 0.0 1.6 2 0 0 2 2 2 1 GTP cyclohydrolase II HTH_3 PF01381.22 gi|116754922|ref|YP_844040.1| - 2.6e-07 30.6 0.1 6.3e-07 29.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_psq PF05225.16 gi|116754922|ref|YP_844040.1| - 2.7e-05 23.8 1.3 0.00013 21.7 0.0 2.4 2 0 0 2 2 2 1 helix-turn-helix, Psq domain PrpR_N PF06506.11 gi|116754922|ref|YP_844040.1| - 5.1e-05 22.9 0.5 8.3e-05 22.2 0.5 1.3 1 0 0 1 1 1 1 Propionate catabolism activator HTH_26 PF13443.6 gi|116754922|ref|YP_844040.1| - 0.00042 20.7 0.0 0.00092 19.6 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 gi|116754922|ref|YP_844040.1| - 0.028 14.5 0.0 0.052 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3368 PF11848.8 gi|116754922|ref|YP_844040.1| - 0.029 14.1 0.0 0.091 12.6 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3368) Mg_chelatase_C PF13335.6 gi|116754922|ref|YP_844040.1| - 0.096 13.3 4.0 0.12 13.1 0.1 2.6 4 0 0 4 4 4 0 Magnesium chelatase, subunit ChlI C-terminal HTH_31 PF13560.6 gi|116754922|ref|YP_844040.1| - 0.11 12.9 0.0 0.25 11.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|116754922|ref|YP_844040.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB XPG_I PF00867.18 gi|116754923|ref|YP_844041.1| - 2.1e-28 98.5 0.0 3.5e-28 97.8 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|116754923|ref|YP_844041.1| - 1.6e-16 60.6 0.0 2.4e-16 60.1 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|116754923|ref|YP_844041.1| - 9.8e-05 22.9 0.0 0.00031 21.3 0.0 1.8 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 gi|116754923|ref|YP_844041.1| - 0.071 13.2 0.0 0.36 11.0 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif Diphthamide_syn PF01866.17 gi|116754924|ref|YP_844042.1| - 5.5e-73 246.1 0.0 6.6e-73 245.8 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF1847 PF08901.11 gi|116754924|ref|YP_844042.1| - 0.074 12.7 0.0 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1847) Pyridoxal_deC PF00282.19 gi|116754925|ref|YP_844043.1| - 2.5e-30 105.4 0.0 1.4e-29 103.0 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|116754925|ref|YP_844043.1| - 4.9e-09 35.6 0.0 8.5e-09 34.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|116754925|ref|YP_844043.1| - 1.9e-07 30.6 0.0 0.0012 18.1 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|116754925|ref|YP_844043.1| - 0.012 14.9 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|116754925|ref|YP_844043.1| - 0.015 14.7 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family PPDK_N PF01326.19 gi|116754926|ref|YP_844044.1| - 7e-117 390.4 0.2 1.1e-116 389.7 0.2 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|116754926|ref|YP_844044.1| - 1.6e-88 296.7 0.4 1.6e-88 296.7 0.4 1.6 2 0 0 2 2 2 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|116754926|ref|YP_844044.1| - 3.3e-25 87.6 2.8 8.6e-25 86.3 2.8 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|116754926|ref|YP_844044.1| - 6.2e-07 28.8 0.6 1.9e-05 23.9 0.3 2.4 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Radical_SAM PF04055.21 gi|116754926|ref|YP_844044.1| - 0.035 14.5 0.1 9.1 6.6 0.0 3.5 1 1 2 3 3 3 0 Radical SAM superfamily Lipase_GDSL PF00657.22 gi|116754926|ref|YP_844044.1| - 0.23 11.4 0.1 0.66 9.9 0.1 1.6 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase LysE PF01810.18 gi|116754927|ref|YP_844045.1| - 6.3e-27 94.3 10.1 6.3e-27 94.3 10.1 1.3 1 1 0 1 1 1 1 LysE type translocator SpoIIM PF01944.17 gi|116754928|ref|YP_844046.1| - 9.1e-30 103.8 11.6 1.1e-29 103.4 11.6 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M DUF4969 PF16339.5 gi|116754928|ref|YP_844046.1| - 0.1 13.0 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) tRNA-synt_2b PF00587.25 gi|116754929|ref|YP_844047.1| - 2.2e-26 92.9 0.0 4.4e-26 91.9 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|116754929|ref|YP_844047.1| - 1.5e-16 60.4 0.1 2.8e-16 59.5 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|116754929|ref|YP_844047.1| - 6e-10 39.2 0.0 1.4e-09 38.0 0.0 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal ATP-grasp_3 PF02655.14 gi|116754930|ref|YP_844048.1| - 1.6e-34 119.3 0.0 2.3e-34 118.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Sec61_beta PF03911.16 gi|116754931|ref|YP_844049.1| - 1.2e-15 57.2 0.1 1.4e-15 57.0 0.1 1.1 1 0 0 1 1 1 1 Sec61beta family FTR_C PF02741.15 gi|116754932|ref|YP_844050.1| - 1.4e-66 223.2 0.5 4.6e-66 221.4 0.2 1.8 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.18 gi|116754932|ref|YP_844050.1| - 2.5e-63 212.2 0.1 5e-63 211.3 0.0 1.5 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase IMP_cyclohyd PF07826.11 gi|116754933|ref|YP_844051.1| - 1.2e-61 207.7 0.0 1.4e-61 207.5 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein TPP_enzyme_C PF02775.21 gi|116754934|ref|YP_844052.1| - 4.4e-25 88.3 0.0 6.1e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|116754935|ref|YP_844053.1| - 2.1e-67 227.3 0.1 2.9e-67 226.8 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|116754935|ref|YP_844053.1| - 2.8e-32 111.1 0.1 5.1e-32 110.2 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|116754935|ref|YP_844053.1| - 2.5e-07 30.6 0.1 5.5e-07 29.5 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|116754936|ref|YP_844054.1| - 7.4e-12 44.6 16.8 2.2e-06 27.2 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|116754936|ref|YP_844054.1| - 1.4e-08 34.7 28.0 1.1e-06 28.7 14.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|116754936|ref|YP_844054.1| - 6.6e-08 32.6 7.9 0.0011 19.1 0.8 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|116754936|ref|YP_844054.1| - 1e-06 28.6 18.1 0.00096 19.1 6.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|116754936|ref|YP_844054.1| - 6.2e-06 26.7 7.8 0.0065 17.0 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|116754936|ref|YP_844054.1| - 1.3e-05 25.0 11.7 0.0094 16.0 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|116754936|ref|YP_844054.1| - 2.6e-05 24.7 15.8 0.00039 21.0 16.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116754936|ref|YP_844054.1| - 3e-05 24.9 13.7 0.002 19.0 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|116754936|ref|YP_844054.1| - 0.00024 21.2 15.1 0.0069 16.5 15.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|116754936|ref|YP_844054.1| - 0.00088 19.6 16.8 0.14 12.7 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|116754936|ref|YP_844054.1| - 0.017 15.6 11.9 0.67 10.5 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|116754936|ref|YP_844054.1| - 0.028 14.8 16.1 0.12 12.9 3.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|116754936|ref|YP_844054.1| - 0.36 11.6 15.0 0.63 10.8 3.5 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|116754936|ref|YP_844054.1| - 0.49 11.5 20.2 1.5 10.0 5.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|116754936|ref|YP_844054.1| - 2.8 8.9 16.4 4.3 8.2 3.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|116754937|ref|YP_844055.1| - 7.5e-38 130.4 0.3 8.7e-38 130.1 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase UPF0047 PF01894.17 gi|116754938|ref|YP_844056.1| - 1.8e-35 121.6 0.0 2.3e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Cass2 PF14526.6 gi|116754938|ref|YP_844056.1| - 0.048 13.8 0.0 0.062 13.5 0.0 1.1 1 0 0 1 1 1 0 Integron-associated effector binding protein TFIIE_alpha PF02002.17 gi|116754939|ref|YP_844057.1| - 5.4e-19 68.0 1.6 8.9e-19 67.3 0.4 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit Rad50_zn_hook PF04423.14 gi|116754939|ref|YP_844057.1| - 0.00084 19.1 0.8 0.015 15.1 0.0 2.3 2 0 0 2 2 2 1 Rad50 zinc hook motif GntR PF00392.21 gi|116754939|ref|YP_844057.1| - 0.0079 15.8 0.6 0.016 14.9 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_9 PF08221.11 gi|116754939|ref|YP_844057.1| - 0.0079 16.3 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|116754939|ref|YP_844057.1| - 0.014 14.9 1.5 0.032 13.8 1.5 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|116754939|ref|YP_844057.1| - 0.016 15.2 0.3 0.03 14.3 0.3 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rep_fac-A_C PF08646.10 gi|116754939|ref|YP_844057.1| - 0.029 14.1 0.4 0.044 13.5 0.4 1.3 1 0 0 1 1 1 0 Replication factor-A C terminal domain SAVED PF18145.1 gi|116754939|ref|YP_844057.1| - 0.065 13.0 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 SMODS-associated and fused to various effectors sensor domain RepL PF05732.11 gi|116754939|ref|YP_844057.1| - 0.086 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) zf-Di19 PF05605.12 gi|116754939|ref|YP_844057.1| - 0.1 12.9 0.1 0.22 11.9 0.1 1.7 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_10 PF10058.9 gi|116754939|ref|YP_844057.1| - 0.38 10.5 2.2 0.74 9.6 2.2 1.4 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein FAD-oxidase_C PF02913.19 gi|116754940|ref|YP_844058.1| - 1.4e-54 185.4 0.0 1.7e-54 185.1 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|116754940|ref|YP_844058.1| - 2.2e-48 163.5 0.2 5e-48 162.4 0.2 1.6 1 0 0 1 1 1 1 FAD binding domain CCG PF02754.16 gi|116754941|ref|YP_844059.1| - 4.2e-28 97.4 2.1 3.9e-14 52.6 0.1 2.6 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|116754941|ref|YP_844059.1| - 1.3e-11 44.8 2.8 1.3e-11 44.8 2.8 2.2 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|116754941|ref|YP_844059.1| - 2.1e-09 37.8 2.2 2.1e-09 37.8 2.2 3.3 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|116754941|ref|YP_844059.1| - 7.4e-09 35.6 8.6 0.00079 19.5 0.1 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|116754941|ref|YP_844059.1| - 7.6e-09 36.0 3.5 7.6e-09 36.0 3.5 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|116754941|ref|YP_844059.1| - 4.6e-05 24.3 10.0 0.048 14.6 0.3 3.5 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|116754941|ref|YP_844059.1| - 0.0014 18.6 3.6 0.0014 18.6 3.6 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|116754941|ref|YP_844059.1| - 0.0021 18.4 2.0 0.0021 18.4 2.0 4.4 5 0 0 5 5 4 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|116754941|ref|YP_844059.1| - 0.0045 17.1 19.9 0.017 15.2 13.7 3.8 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|116754941|ref|YP_844059.1| - 0.024 14.5 5.2 0.024 14.5 5.2 3.5 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|116754941|ref|YP_844059.1| - 0.035 14.2 0.6 0.035 14.2 0.6 3.4 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|116754941|ref|YP_844059.1| - 0.12 12.9 13.0 0.9 10.1 1.9 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|116754941|ref|YP_844059.1| - 0.41 11.5 10.5 0.87 10.5 0.7 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|116754941|ref|YP_844059.1| - 0.62 10.8 6.6 8 7.3 0.1 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|116754941|ref|YP_844059.1| - 0.86 9.8 11.8 0.33 11.2 0.3 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain SIMPL PF04402.14 gi|116754942|ref|YP_844060.1| - 3.9e-27 96.0 4.2 4.7e-27 95.7 4.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) pPIWI_RE_Z PF18155.1 gi|116754942|ref|YP_844060.1| - 0.18 11.7 0.1 0.33 10.8 0.1 1.4 1 0 0 1 1 1 0 pPIWI RE three-gene island domain Z MtrH PF02007.18 gi|116754943|ref|YP_844061.1| - 5.3e-99 331.1 0.0 6.1e-99 330.9 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit DUF1611_N PF17396.2 gi|116754943|ref|YP_844061.1| - 0.11 12.8 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain CdhD PF03599.16 gi|116754943|ref|YP_844061.1| - 0.17 10.5 0.0 0.36 9.5 0.0 1.5 2 0 0 2 2 2 0 CO dehydrogenase/acetyl-CoA synthase delta subunit Alba PF01918.21 gi|116754944|ref|YP_844062.1| - 2.5e-18 65.7 0.5 3.2e-18 65.3 0.5 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|116754944|ref|YP_844062.1| - 0.018 15.0 0.1 0.023 14.6 0.1 1.4 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Formyl_trans_N PF00551.19 gi|116754945|ref|YP_844063.1| - 2.5e-52 177.3 0.0 2.8e-52 177.1 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase ubiquitin PF00240.23 gi|116754945|ref|YP_844063.1| - 0.073 12.8 0.0 0.22 11.3 0.0 1.7 2 0 0 2 2 2 0 Ubiquitin family HIT PF01230.23 gi|116754946|ref|YP_844064.1| - 2.3e-13 50.7 0.0 3.3e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|116754946|ref|YP_844064.1| - 7.3e-05 23.2 0.0 0.00011 22.7 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|116754946|ref|YP_844064.1| - 0.00044 20.1 0.0 0.00064 19.6 0.0 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 TGT PF01702.18 gi|116754948|ref|YP_844066.1| - 2.6e-83 280.1 0.0 3.5e-83 279.7 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|116754949|ref|YP_844067.1| - 1.2e-50 171.3 0.0 1.8e-50 170.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|116754949|ref|YP_844067.1| - 5.2e-11 42.3 0.0 1.2e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 PUA domain TGT PF01702.18 gi|116754949|ref|YP_844067.1| - 1.8e-06 27.4 0.1 0.00045 19.5 0.0 3.0 2 1 0 2 2 2 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.6 gi|116754949|ref|YP_844067.1| - 0.00027 21.0 0.3 0.00098 19.2 0.3 2.0 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase HD PF01966.22 gi|116754951|ref|YP_844069.1| - 1.4e-12 47.9 1.4 3.2e-12 46.8 1.4 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|116754951|ref|YP_844069.1| - 0.0074 15.8 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 HDOD domain YojJ PF10372.9 gi|116754952|ref|YP_844070.1| - 0.048 13.8 2.0 4.8 7.3 0.1 2.1 2 0 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus DASH_Dam1 PF08653.10 gi|116754952|ref|YP_844070.1| - 0.091 12.6 2.8 8 6.3 0.1 2.8 2 1 1 3 3 3 0 DASH complex subunit Dam1 SseC PF04888.12 gi|116754952|ref|YP_844070.1| - 0.35 10.4 2.8 1.1 8.8 0.3 1.9 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family FmdE PF02663.14 gi|116754953|ref|YP_844071.1| - 3.3e-38 130.7 0.0 4.6e-38 130.3 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|116754953|ref|YP_844071.1| - 3.8e-08 33.1 1.8 7e-08 32.3 1.8 1.4 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|116754953|ref|YP_844071.1| - 0.0042 17.3 0.2 0.0075 16.5 0.2 1.4 1 0 0 1 1 1 1 LIM domain Zn-ribbon_8 PF09723.10 gi|116754953|ref|YP_844071.1| - 0.031 14.4 0.9 0.071 13.2 0.9 1.6 1 0 0 1 1 1 0 Zinc ribbon domain ATP-grasp_3 PF02655.14 gi|116754954|ref|YP_844072.1| - 3.9e-38 131.0 0.0 5.1e-38 130.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|116754954|ref|YP_844072.1| - 4.7e-06 26.4 0.0 9.5e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|116754954|ref|YP_844072.1| - 0.0001 21.9 0.1 0.00056 19.5 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|116754954|ref|YP_844072.1| - 0.0036 16.6 0.0 0.013 14.8 0.0 1.8 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|116754954|ref|YP_844072.1| - 0.014 15.0 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain RimK PF08443.11 gi|116754954|ref|YP_844072.1| - 0.07 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|116754954|ref|YP_844072.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus Trm56 PF01994.16 gi|116754955|ref|YP_844073.1| - 4.1e-48 162.2 0.0 5e-48 161.9 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.6 gi|116754955|ref|YP_844073.1| - 0.12 11.8 0.1 0.34 10.3 0.0 1.7 1 1 1 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP Cdc6_C PF09079.11 gi|116754956|ref|YP_844074.1| - 0.032 14.2 0.5 0.06 13.3 0.5 1.5 1 1 0 1 1 1 0 CDC6, C terminal winged helix domain Penicillinase_R PF03965.16 gi|116754956|ref|YP_844074.1| - 0.036 14.4 0.0 0.055 13.8 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor PaaX PF07848.12 gi|116754956|ref|YP_844074.1| - 0.069 13.4 0.1 0.12 12.6 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein ABC2_membrane_3 PF12698.7 gi|116754957|ref|YP_844075.1| - 6.3e-36 124.2 16.9 7.2e-36 124.0 16.9 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|116754957|ref|YP_844075.1| - 3.3e-32 111.6 17.2 3.3e-32 111.6 17.2 2.4 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|116754957|ref|YP_844075.1| - 1.8e-08 34.0 17.3 3.1e-08 33.2 17.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|116754957|ref|YP_844075.1| - 5.6e-06 26.0 2.2 1.5e-05 24.6 2.2 1.6 1 0 0 1 1 1 1 CcmB protein ABC2_membrane_4 PF12730.7 gi|116754957|ref|YP_844075.1| - 0.0024 17.8 8.1 0.0024 17.8 8.1 2.5 3 0 0 3 3 3 1 ABC-2 family transporter protein DUF4621 PF15414.6 gi|116754957|ref|YP_844075.1| - 0.046 12.6 0.0 0.069 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4621) ABC_tran PF00005.27 gi|116754958|ref|YP_844076.1| - 3.6e-30 105.3 0.0 5.6e-30 104.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|116754958|ref|YP_844076.1| - 3e-13 50.2 0.9 1.7e-05 24.8 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|116754958|ref|YP_844076.1| - 6.1e-06 26.2 0.0 0.036 13.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|116754958|ref|YP_844076.1| - 0.00011 21.7 0.0 0.031 13.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|116754958|ref|YP_844076.1| - 0.00025 21.6 0.0 0.00043 20.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|116754958|ref|YP_844076.1| - 0.00041 20.0 0.0 0.00082 19.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|116754958|ref|YP_844076.1| - 0.00082 19.1 0.0 0.0063 16.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|116754958|ref|YP_844076.1| - 0.0073 16.0 0.0 0.016 14.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|116754958|ref|YP_844076.1| - 0.016 15.7 0.0 0.042 14.3 0.0 1.8 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|116754958|ref|YP_844076.1| - 0.019 14.9 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|116754958|ref|YP_844076.1| - 0.028 14.8 0.0 0.1 13.0 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|116754958|ref|YP_844076.1| - 0.032 14.1 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 NTPase ATP_bind_1 PF03029.17 gi|116754958|ref|YP_844076.1| - 0.08 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein TsaE PF02367.17 gi|116754958|ref|YP_844076.1| - 0.086 12.8 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|116754958|ref|YP_844076.1| - 0.098 12.8 0.0 0.2 11.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|116754958|ref|YP_844076.1| - 0.13 11.6 0.2 0.56 9.5 0.0 2.0 3 0 0 3 3 3 0 KaiC ATP-synt_ab PF00006.25 gi|116754958|ref|YP_844076.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF4162 PF13732.6 gi|116754958|ref|YP_844076.1| - 0.15 12.8 0.0 0.29 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) CARDB PF07705.11 gi|116754959|ref|YP_844077.1| - 6.4e-07 29.6 0.1 0.003 17.8 0.0 2.6 2 1 0 2 2 2 2 CARDB NPCBM_assoc PF10633.9 gi|116754959|ref|YP_844077.1| - 7e-06 26.2 0.1 7.5e-05 22.9 0.0 2.6 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|116754959|ref|YP_844077.1| - 2e-05 24.8 0.9 0.014 15.7 0.1 2.7 2 1 0 2 2 2 2 Domain of unknown function DUF11 TRAP_beta PF05753.14 gi|116754959|ref|YP_844077.1| - 0.13 11.6 0.1 4.7 6.6 0.0 2.6 3 0 0 3 3 3 0 Translocon-associated protein beta (TRAPB) Helicase_C_2 PF13307.6 gi|116754960|ref|YP_844078.1| - 6.5e-35 120.8 0.0 1.2e-34 119.9 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|116754960|ref|YP_844078.1| - 2e-13 50.4 0.0 4.7e-13 49.1 0.0 1.7 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|116754960|ref|YP_844078.1| - 1.7e-06 28.1 0.0 0.0096 15.9 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit HBB PF06777.11 gi|116754960|ref|YP_844078.1| - 7.3e-05 22.5 0.0 0.00026 20.7 0.0 1.9 2 0 0 2 2 2 1 Helical and beta-bridge domain DEAD PF00270.29 gi|116754960|ref|YP_844078.1| - 0.0003 20.6 0.1 0.034 13.9 0.0 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|116754960|ref|YP_844078.1| - 0.0032 17.8 0.1 1.7 8.9 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|116754960|ref|YP_844078.1| - 0.0065 16.9 0.0 0.025 15.0 0.0 2.0 1 0 0 1 1 1 1 AAA ATPase domain SNF2_N PF00176.23 gi|116754960|ref|YP_844078.1| - 0.14 10.8 0.0 0.24 10.1 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain Polysacc_synt PF01943.17 gi|116754961|ref|YP_844079.1| - 1.2e-22 80.7 30.9 1.2e-22 80.7 30.9 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|116754961|ref|YP_844079.1| - 1.1e-20 74.1 20.7 1.1e-20 74.1 20.7 2.3 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|116754961|ref|YP_844079.1| - 1.2e-18 67.5 53.7 2.8e-14 53.4 26.8 3.9 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|116754961|ref|YP_844079.1| - 2.2e-08 33.2 22.0 2.2e-08 33.2 22.0 3.4 1 1 2 3 3 3 3 Lipid II flippase MurJ MatE PF01554.18 gi|116754961|ref|YP_844079.1| - 5.4e-06 26.2 11.9 5.4e-06 26.2 11.9 3.9 4 1 0 4 4 4 2 MatE Glycos_transf_2 PF00535.26 gi|116754962|ref|YP_844080.1| - 4.6e-18 65.6 0.0 8.5e-18 64.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|116754962|ref|YP_844080.1| - 1.8e-05 24.8 0.0 2.6e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|116754962|ref|YP_844080.1| - 0.046 14.2 0.0 0.11 13.1 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|116754962|ref|YP_844080.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|116754963|ref|YP_844081.1| - 3.9e-28 98.1 0.2 7.8e-28 97.1 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|116754963|ref|YP_844081.1| - 1.5e-23 83.7 0.0 3.2e-23 82.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|116754963|ref|YP_844081.1| - 1.5e-15 57.6 0.0 4.5e-15 56.1 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|116754963|ref|YP_844081.1| - 1.1e-10 41.8 0.0 2.5e-10 40.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|116754963|ref|YP_844081.1| - 7.3e-06 26.1 0.6 4.5e-05 23.5 0.4 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|116754963|ref|YP_844081.1| - 1.8e-05 25.2 0.0 0.0018 18.7 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Epimerase_2 PF02350.19 gi|116754963|ref|YP_844081.1| - 0.021 13.7 0.0 0.14 11.0 0.0 2.1 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase B56 PF01603.20 gi|116754963|ref|YP_844081.1| - 0.028 13.4 0.2 0.28 10.1 0.1 2.0 2 0 0 2 2 2 0 Protein phosphatase 2A regulatory B subunit (B56 family) Glycos_transf_1 PF00534.20 gi|116754964|ref|YP_844082.1| - 1.9e-25 89.4 0.0 3.4e-25 88.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|116754964|ref|YP_844082.1| - 1.8e-22 80.2 0.1 3.3e-22 79.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|116754964|ref|YP_844082.1| - 7.7e-10 39.0 0.0 1.4e-09 38.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|116754964|ref|YP_844082.1| - 0.00024 21.5 0.0 0.00047 20.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|116754964|ref|YP_844082.1| - 0.012 16.1 0.1 0.022 15.2 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|116754965|ref|YP_844083.1| - 1.1e-07 32.0 0.2 2.5e-07 30.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|116754965|ref|YP_844083.1| - 9.8e-07 29.3 0.1 3.2e-06 27.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|116754965|ref|YP_844083.1| - 2.1e-05 24.1 0.0 3.8e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|116754965|ref|YP_844083.1| - 0.0054 16.8 0.0 0.011 15.8 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.6 gi|116754966|ref|YP_844084.1| - 3.8e-14 53.3 0.0 7.2e-14 52.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|116754966|ref|YP_844084.1| - 8.2e-12 45.0 0.0 1.2e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|116754966|ref|YP_844084.1| - 1.3e-10 41.5 0.1 2.8e-10 40.5 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|116754966|ref|YP_844084.1| - 1.5e-10 41.8 0.0 3.1e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|116754966|ref|YP_844084.1| - 1.8e-09 37.9 0.0 3.7e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF4350 PF14258.6 gi|116754966|ref|YP_844084.1| - 0.12 12.8 0.1 0.33 11.4 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) Hexapep PF00132.24 gi|116754967|ref|YP_844085.1| - 3.2e-19 67.9 16.8 8.9e-08 31.6 0.5 5.7 3 1 2 6 6 6 5 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.23 gi|116754967|ref|YP_844085.1| - 1.1e-18 67.7 0.0 1.4e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|116754967|ref|YP_844085.1| - 2.9e-07 31.0 0.1 5.8e-07 30.0 0.1 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|116754967|ref|YP_844085.1| - 0.00016 21.3 18.4 0.0027 17.4 1.5 5.3 3 2 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|116754967|ref|YP_844085.1| - 0.013 13.7 1.4 0.028 12.6 1.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|116754967|ref|YP_844085.1| - 0.42 9.5 1.9 2.2 7.2 0.6 2.1 1 1 1 2 2 2 0 L-fucokinase SIS PF01380.22 gi|116754968|ref|YP_844086.1| - 1.9e-46 157.2 0.2 3.2e-25 88.5 0.1 2.6 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|116754968|ref|YP_844086.1| - 9.9e-22 77.6 0.0 2.1e-21 76.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|116754968|ref|YP_844086.1| - 8e-16 58.1 0.0 1.6e-15 57.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|116754968|ref|YP_844086.1| - 5.6e-05 23.2 0.1 0.0037 17.3 0.0 2.7 1 1 1 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|116754968|ref|YP_844086.1| - 0.031 13.2 0.0 0.055 12.4 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II mCpol PF18182.1 gi|116754968|ref|YP_844086.1| - 0.11 12.8 0.0 17 5.8 0.0 3.1 3 0 0 3 3 3 0 minimal CRISPR polymerase domain ZnuA PF01297.17 gi|116754969|ref|YP_844087.1| - 1.8e-28 99.7 0.1 3.1e-28 98.9 0.1 1.4 1 1 0 1 1 1 1 Zinc-uptake complex component A periplasmic Hydrolase PF00702.26 gi|116754970|ref|YP_844088.1| - 1.8e-19 70.9 0.1 2.8e-19 70.2 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|116754970|ref|YP_844088.1| - 2.5e-19 70.4 0.1 9.5e-19 68.5 0.0 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase ACT_6 PF13740.6 gi|116754970|ref|YP_844088.1| - 1.6e-13 50.5 0.2 3.3e-10 39.8 0.0 2.5 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|116754970|ref|YP_844088.1| - 1.4e-12 47.2 2.8 1.1e-05 25.1 0.0 2.6 2 0 0 2 2 2 2 ACT domain Hydrolase_3 PF08282.12 gi|116754970|ref|YP_844088.1| - 7.2e-10 39.0 0.5 7.2e-10 39.0 0.5 2.4 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase ACT_4 PF13291.6 gi|116754970|ref|YP_844088.1| - 4.1e-09 36.9 0.6 0.0069 16.9 0.0 3.0 3 0 0 3 3 3 2 ACT domain Put_Phosphatase PF06888.12 gi|116754970|ref|YP_844088.1| - 3e-08 33.3 1.5 1.1e-05 25.0 0.0 2.5 3 0 0 3 3 3 2 Putative Phosphatase HAD_2 PF13419.6 gi|116754970|ref|YP_844088.1| - 1.4e-07 31.8 3.6 3.1e-06 27.4 3.6 2.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase FliG_M PF14841.6 gi|116754970|ref|YP_844088.1| - 0.0017 18.6 0.3 0.87 9.9 0.0 2.9 2 1 1 3 3 3 1 FliG middle domain AA_kinase PF00696.28 gi|116754970|ref|YP_844088.1| - 0.031 13.8 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 Amino acid kinase family Rho_N PF07498.12 gi|116754970|ref|YP_844088.1| - 0.09 12.7 1.3 0.89 9.5 0.1 2.9 3 0 0 3 3 3 0 Rho termination factor, N-terminal domain S6PP PF05116.13 gi|116754970|ref|YP_844088.1| - 0.14 11.7 0.2 0.83 9.1 0.0 2.0 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase TrmB PF01978.19 gi|116754971|ref|YP_844089.1| - 1.9e-20 72.5 0.0 6.5e-20 70.8 0.0 2.0 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|116754971|ref|YP_844089.1| - 0.00014 21.6 0.0 0.00035 20.3 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.14 gi|116754971|ref|YP_844089.1| - 0.035 14.1 0.1 8.8 6.4 0.0 2.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|116754971|ref|YP_844089.1| - 0.037 13.9 0.0 0.11 12.4 0.0 1.9 1 1 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|116754971|ref|YP_844089.1| - 0.084 13.0 0.0 0.28 11.3 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|116754971|ref|YP_844089.1| - 0.13 12.2 0.0 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 MarR family Radical_SAM PF04055.21 gi|116754972|ref|YP_844090.1| - 2.8e-18 66.8 0.3 8.6e-18 65.3 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|116754972|ref|YP_844090.1| - 6.7e-08 32.7 0.2 7.5e-05 22.9 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|116754972|ref|YP_844090.1| - 1.1e-06 29.0 0.4 0.00014 22.1 0.4 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|116754972|ref|YP_844090.1| - 0.0031 17.0 0.0 0.023 14.2 0.0 2.1 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Hpr_kinase_C PF07475.12 gi|116754973|ref|YP_844091.1| - 5.8e-06 25.9 0.4 8.3e-05 22.2 0.2 2.1 2 0 0 2 2 2 1 HPr Serine kinase C-terminal domain PEPCK_ATP PF01293.20 gi|116754973|ref|YP_844091.1| - 0.0012 17.6 0.0 0.0016 17.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_33 PF13671.6 gi|116754973|ref|YP_844091.1| - 0.0078 16.4 0.0 0.027 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|116754973|ref|YP_844091.1| - 0.015 15.6 0.0 0.026 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|116754973|ref|YP_844091.1| - 0.083 12.7 0.2 0.17 11.6 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.9 gi|116754973|ref|YP_844091.1| - 0.1 11.5 0.1 0.17 10.8 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain eIF-5a PF01287.20 gi|116754974|ref|YP_844092.1| - 2.2e-08 34.1 0.3 3.8e-08 33.3 0.3 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|116754974|ref|YP_844092.1| - 8.8e-06 25.7 0.0 1.8e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain PAS_8 PF13188.7 gi|116754975|ref|YP_844093.1| - 6.8e-07 29.2 0.0 1.4e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|116754975|ref|YP_844093.1| - 2e-05 24.8 0.0 3.4e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|116754975|ref|YP_844093.1| - 3.6e-05 23.7 0.0 0.00045 20.2 0.0 2.4 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|116754975|ref|YP_844093.1| - 9.3e-05 22.6 0.0 0.00016 21.9 0.0 1.4 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|116754975|ref|YP_844093.1| - 0.0034 17.4 0.1 0.025 14.6 0.0 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain UbiA PF01040.18 gi|116754976|ref|YP_844094.1| - 0.0033 16.7 1.2 0.0039 16.5 1.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family FA_desaturase PF00487.24 gi|116754976|ref|YP_844094.1| - 0.009 15.9 1.1 0.0093 15.8 1.1 1.0 1 0 0 1 1 1 1 Fatty acid desaturase Sec20 PF03908.13 gi|116754976|ref|YP_844094.1| - 3.1 7.8 5.8 0.18 11.7 0.5 1.7 1 1 1 2 2 2 0 Sec20 PhoR PF11808.8 gi|116754976|ref|YP_844094.1| - 7.8 7.0 10.4 12 6.4 10.4 1.3 1 1 0 1 1 1 0 Phosphate regulon sensor protein PhoR Pentapeptide_3 PF13576.6 gi|116754977|ref|YP_844095.1| - 3e-25 88.1 60.9 2.9e-08 33.7 9.0 7.1 2 1 5 7 7 7 6 Pentapeptide repeats (9 copies) Ig_2 PF13895.6 gi|116754978|ref|YP_844096.1| - 2.3e-48 162.4 77.5 0.00061 20.1 1.3 12.9 3 1 10 13 13 12 11 Immunoglobulin domain SprB PF13573.6 gi|116754978|ref|YP_844096.1| - 2.1e-37 126.6 83.5 0.0021 17.8 0.2 15.0 15 0 0 15 15 14 11 SprB repeat Ig_3 PF13927.6 gi|116754978|ref|YP_844096.1| - 2.2e-36 124.3 52.7 0.0033 18.0 0.2 13.3 14 0 0 14 14 11 11 Immunoglobulin domain I-set PF07679.16 gi|116754978|ref|YP_844096.1| - 3.3e-35 120.0 3.2 0.55 10.3 0.0 14.2 14 0 0 14 14 14 11 Immunoglobulin I-set domain DUF11 PF01345.18 gi|116754978|ref|YP_844096.1| - 1.9e-31 108.2 84.8 1.1e-16 60.9 4.1 11.9 16 1 0 16 16 7 6 Domain of unknown function DUF11 C2-set_2 PF08205.12 gi|116754978|ref|YP_844096.1| - 5.8e-14 51.9 24.4 4.2 7.5 0.0 11.4 11 0 0 11 11 11 5 CD80-like C2-set immunoglobulin domain SdrD_B PF17210.3 gi|116754978|ref|YP_844096.1| - 2.5e-13 50.2 1.7 2.5e-13 50.2 1.7 10.9 13 0 0 13 13 13 2 SdrD B-like domain CarboxypepD_reg PF13620.6 gi|116754978|ref|YP_844096.1| - 1.9e-06 28.1 0.1 1.9e-06 28.1 0.1 13.3 15 1 0 15 15 14 1 Carboxypeptidase regulatory-like domain MBG PF17883.1 gi|116754978|ref|YP_844096.1| - 1.5e-05 25.5 91.6 2.3 8.9 0.4 15.5 14 1 1 15 15 14 5 MBG domain CarbopepD_reg_2 PF13715.6 gi|116754978|ref|YP_844096.1| - 9.9e-05 22.3 0.2 0.0017 18.3 0.2 3.4 1 0 0 1 1 1 1 CarboxypepD_reg-like domain bMG10 PF17973.1 gi|116754978|ref|YP_844096.1| - 0.0011 19.2 3.3 1.4 9.1 0.0 5.1 5 1 0 5 5 4 1 Bacterial Alpha-2-macroglobulin MG10 domain CARDB PF07705.11 gi|116754978|ref|YP_844096.1| - 0.0039 17.4 23.7 0.25 11.6 0.5 7.1 7 1 0 7 7 7 2 CARDB Chlam_OMP6 PF03504.13 gi|116754978|ref|YP_844096.1| - 0.0053 17.0 0.1 0.66 10.3 0.0 3.9 3 0 0 3 3 2 1 Chlamydia cysteine-rich outer membrane protein 6 SpaA PF17802.1 gi|116754978|ref|YP_844096.1| - 0.0062 16.8 5.7 0.0062 16.8 5.7 10.0 11 1 1 12 12 12 1 Prealbumin-like fold domain DUF4897 PF16238.5 gi|116754978|ref|YP_844096.1| - 0.0096 15.8 0.7 0.52 10.1 0.1 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4897) TRAP_beta PF05753.14 gi|116754978|ref|YP_844096.1| - 0.011 15.1 2.7 2.1 7.7 0.0 3.8 4 0 0 4 4 4 0 Translocon-associated protein beta (TRAPB) DUF2012 PF09430.10 gi|116754978|ref|YP_844096.1| - 0.014 15.5 0.0 0.051 13.7 0.0 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF2012) DUF1573 PF07610.11 gi|116754978|ref|YP_844096.1| - 0.054 13.5 1.2 63 3.7 0.1 5.6 6 0 0 6 6 4 0 Protein of unknown function (DUF1573) CusF_Ec PF11604.8 gi|116754978|ref|YP_844096.1| - 0.16 12.0 0.2 30 4.7 0.0 4.0 4 0 0 4 4 3 0 Copper binding periplasmic protein CusF Peptidase_M73 PF12389.8 gi|116754978|ref|YP_844096.1| - 0.18 11.7 0.5 1.8 8.3 0.1 2.8 4 0 0 4 4 3 0 Camelysin metallo-endopeptidase YrbL-PhoP_reg PF10707.9 gi|116754978|ref|YP_844096.1| - 0.41 10.1 18.7 79 2.7 0.0 7.6 8 0 0 8 8 8 0 PhoP regulatory network protein YrbL DUF1897 PF09005.10 gi|116754978|ref|YP_844096.1| - 7.8 6.1 60.9 7 6.2 0.3 9.7 11 0 0 11 11 11 0 Domain of unknown function (DUF1897) NPCBM_assoc PF10633.9 gi|116754978|ref|YP_844096.1| - 9.3 6.6 20.2 0.51 10.6 0.4 6.9 6 2 0 6 6 5 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Hexapep PF00132.24 gi|116754979|ref|YP_844097.1| - 6.5e-11 41.5 5.4 0.0033 17.1 0.3 4.0 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|116754979|ref|YP_844097.1| - 0.011 15.5 1.6 0.51 10.1 0.4 2.7 2 0 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase LPG_synthase_TM PF03706.13 gi|116754980|ref|YP_844098.1| - 6.8e-41 140.8 33.5 6.8e-41 140.8 33.5 1.4 2 0 0 2 2 2 1 Lysylphosphatidylglycerol synthase TM region GCS2 PF04107.13 gi|116754981|ref|YP_844099.1| - 7.8e-45 153.4 0.0 1.1e-44 152.9 0.0 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) GCS PF03074.16 gi|116754981|ref|YP_844099.1| - 0.049 13.0 0.1 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 Glutamate-cysteine ligase CxxCxxCC PF03692.15 gi|116754982|ref|YP_844100.1| - 3.6e-10 40.4 0.2 7e-10 39.5 0.2 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF5568 PF17724.1 gi|116754982|ref|YP_844100.1| - 0.075 12.9 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5568) RimK PF08443.11 gi|116754983|ref|YP_844101.1| - 2.6e-10 40.2 0.0 6.4e-10 38.9 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|116754983|ref|YP_844101.1| - 3.1e-08 33.8 0.0 5.2e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain R2K_2 PF18299.1 gi|116754983|ref|YP_844101.1| - 0.00021 21.2 0.0 0.00052 19.9 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain, R2K clade family 2 R2K_3 PF14243.6 gi|116754983|ref|YP_844101.1| - 0.00046 20.3 0.1 0.001 19.1 0.1 1.6 1 1 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 Dala_Dala_lig_C PF07478.13 gi|116754983|ref|YP_844101.1| - 0.00063 19.3 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.6 gi|116754983|ref|YP_844101.1| - 0.063 12.5 0.0 1.9 7.7 0.0 2.1 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp RLAN PF14401.6 gi|116754984|ref|YP_844102.1| - 8.4e-10 38.5 0.1 1.7e-09 37.5 0.1 1.5 1 1 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain Thioredox_DsbH PF03190.15 gi|116754985|ref|YP_844103.1| - 7.8e-73 243.8 0.0 1.3e-72 243.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|116754985|ref|YP_844103.1| - 3.9e-11 43.0 0.0 6.5e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_88 PF07470.13 gi|116754985|ref|YP_844103.1| - 2.6e-05 23.5 0.2 0.00084 18.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl Hydrolase Family 88 C5-epim_C PF06662.13 gi|116754985|ref|YP_844103.1| - 0.0014 18.2 0.1 2 7.9 0.0 2.9 2 1 1 3 3 3 2 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_127 PF07944.12 gi|116754985|ref|YP_844103.1| - 0.07 11.6 0.0 0.2 10.1 0.0 1.6 2 0 0 2 2 2 0 Beta-L-arabinofuranosidase, GH127 DUF5432 PF17497.2 gi|116754986|ref|YP_844104.1| - 0.015 15.4 0.1 0.025 14.6 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5432) eIF-5_eIF-2B PF01873.17 gi|116754986|ref|YP_844104.1| - 0.18 11.7 0.6 0.64 9.9 0.5 1.8 2 0 0 2 2 2 0 Domain found in IF2B/IF5 zinc_ribbon_5 PF13719.6 gi|116754986|ref|YP_844104.1| - 0.2 11.4 2.0 9.8 6.0 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|116754986|ref|YP_844104.1| - 0.26 11.2 4.5 1.2 9.2 4.5 2.1 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.6 gi|116754986|ref|YP_844104.1| - 0.7 9.9 4.0 1.7 8.7 4.0 1.6 1 0 0 1 1 1 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|116754986|ref|YP_844104.1| - 1.7 8.7 4.2 8.1 6.5 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|116754986|ref|YP_844104.1| - 2.8 7.5 5.3 2.6 7.6 2.9 2.1 2 1 0 2 2 2 0 TFIIB zinc-binding PCMT PF01135.19 gi|116754987|ref|YP_844105.1| - 5.8e-76 254.9 0.0 6.5e-76 254.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|116754987|ref|YP_844105.1| - 5.7e-12 45.7 0.0 7.7e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|116754987|ref|YP_844105.1| - 2.9e-06 27.9 0.0 5e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|116754987|ref|YP_844105.1| - 3.6e-06 26.5 0.0 4.4e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family GCD14 PF08704.10 gi|116754987|ref|YP_844105.1| - 6.9e-06 25.9 0.0 9.7e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Fibrillarin PF01269.17 gi|116754987|ref|YP_844105.1| - 2e-05 23.8 0.0 2.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin Methyltransf_3 PF01596.17 gi|116754987|ref|YP_844105.1| - 3.2e-05 23.2 0.0 4.1e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_11 PF08241.12 gi|116754987|ref|YP_844105.1| - 0.0011 19.5 0.0 0.0032 18.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|116754987|ref|YP_844105.1| - 0.0014 17.7 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|116754987|ref|YP_844105.1| - 0.0048 16.2 0.0 0.0071 15.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltr_RsmB-F PF01189.17 gi|116754987|ref|YP_844105.1| - 0.005 16.5 0.0 0.009 15.7 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|116754987|ref|YP_844105.1| - 0.0055 16.3 0.0 0.0093 15.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|116754987|ref|YP_844105.1| - 0.0096 15.8 0.0 0.018 14.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|116754987|ref|YP_844105.1| - 0.018 14.8 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_4 PF02390.17 gi|116754987|ref|YP_844105.1| - 0.03 13.8 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_2 PF00891.18 gi|116754987|ref|YP_844105.1| - 0.079 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain DUF938 PF06080.12 gi|116754987|ref|YP_844105.1| - 0.13 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) CarboxypepD_reg PF13620.6 gi|116754988|ref|YP_844106.1| - 8.9e-11 41.9 2.8 1e-10 41.7 1.0 2.1 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF2012 PF09430.10 gi|116754988|ref|YP_844106.1| - 0.12 12.5 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) bPH_5 PF10882.8 gi|116754989|ref|YP_844107.1| - 0.019 15.0 0.1 0.2 11.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial PH domain TruB_N PF01509.18 gi|116754990|ref|YP_844108.1| - 6.2e-26 91.5 0.7 5.4e-16 59.3 0.1 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|116754990|ref|YP_844108.1| - 1.7e-24 85.7 0.1 2.8e-24 85.0 0.1 1.4 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|116754990|ref|YP_844108.1| - 7.4e-20 70.7 0.2 1.3e-19 69.9 0.2 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|116754990|ref|YP_844108.1| - 4.8e-17 61.8 0.0 2.5e-16 59.5 0.0 2.1 2 0 0 2 2 2 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|116754990|ref|YP_844108.1| - 0.15 12.3 0.0 0.47 10.8 0.0 1.9 2 0 0 2 2 2 0 UPF0113 PUA domain Cytidylate_kin2 PF13189.6 gi|116754991|ref|YP_844109.1| - 1e-23 84.4 0.1 6.3e-13 49.3 0.3 2.0 1 1 1 2 2 2 2 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|116754991|ref|YP_844109.1| - 3.5e-14 53.1 0.6 2.9e-06 27.2 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_18 PF13238.6 gi|116754991|ref|YP_844109.1| - 1.6e-12 48.1 0.0 2.2e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|116754991|ref|YP_844109.1| - 1.3e-08 35.4 0.1 2.7e-08 34.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|116754991|ref|YP_844109.1| - 3e-06 27.5 0.2 0.0013 18.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|116754991|ref|YP_844109.1| - 0.00011 22.5 0.1 0.00039 20.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain ADK PF00406.22 gi|116754991|ref|YP_844109.1| - 0.00025 21.2 0.1 0.0034 17.5 0.0 2.0 1 1 1 2 2 2 1 Adenylate kinase SKI PF01202.22 gi|116754991|ref|YP_844109.1| - 0.0033 17.5 0.4 0.019 15.1 0.4 1.8 1 1 0 1 1 1 1 Shikimate kinase PRK PF00485.18 gi|116754991|ref|YP_844109.1| - 0.013 15.3 0.0 0.046 13.5 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family dNK PF01712.19 gi|116754991|ref|YP_844109.1| - 0.043 13.7 0.1 1.8 8.4 0.0 2.2 2 0 0 2 2 2 0 Deoxynucleoside kinase CPT PF07931.12 gi|116754991|ref|YP_844109.1| - 0.065 13.1 0.1 0.2 11.5 0.1 1.9 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein CoaE PF01121.20 gi|116754991|ref|YP_844109.1| - 0.065 12.9 0.1 0.83 9.3 0.0 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA PF00004.29 gi|116754991|ref|YP_844109.1| - 0.11 12.9 0.0 0.2 12.1 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) EMC3_TMCO1 PF01956.16 gi|116754992|ref|YP_844110.1| - 1e-46 158.8 4.8 1.2e-46 158.5 4.8 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like DUF2048 PF09752.9 gi|116754992|ref|YP_844110.1| - 0.091 11.8 0.0 0.098 11.7 0.0 1.1 1 0 0 1 1 1 0 Abhydrolase domain containing 18 Bac_export_2 PF01312.19 gi|116754992|ref|YP_844110.1| - 0.13 11.4 3.1 0.18 11.0 3.1 1.2 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family HPIH PF13323.6 gi|116754992|ref|YP_844110.1| - 0.18 11.7 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain with HPIH motif SecY PF00344.20 gi|116754993|ref|YP_844111.1| - 2e-65 221.1 21.7 2.4e-65 220.8 21.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|116754993|ref|YP_844111.1| - 5.5e-12 45.3 1.8 1.4e-11 44.0 1.8 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Ninjurin PF04923.12 gi|116754993|ref|YP_844111.1| - 5.4 7.0 10.3 4.1 7.4 0.1 2.9 3 0 0 3 3 3 0 Ninjurin Ribosomal_L27A PF00828.19 gi|116754994|ref|YP_844112.1| - 1.6e-16 61.1 4.7 2.7e-15 57.2 4.7 2.2 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|116754994|ref|YP_844112.1| - 0.0029 17.0 0.3 0.0047 16.3 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L30 PF00327.20 gi|116754995|ref|YP_844113.1| - 7.2e-16 57.8 0.0 1.5e-15 56.8 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e YtxC PF08812.11 gi|116754995|ref|YP_844113.1| - 0.048 13.3 0.0 0.063 12.9 0.0 1.1 1 0 0 1 1 1 0 YtxC-like family Ribosomal_S5_C PF03719.15 gi|116754996|ref|YP_844114.1| - 1.4e-23 82.1 0.1 2.4e-23 81.4 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|116754996|ref|YP_844114.1| - 2.3e-22 78.7 2.4 8.1e-22 77.0 1.4 2.2 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L5e PF17144.4 gi|116754997|ref|YP_844115.1| - 2.7e-33 115.2 1.2 1.1e-22 80.7 0.4 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|116754997|ref|YP_844115.1| - 0.00068 20.0 0.0 0.001 19.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|116754998|ref|YP_844116.1| - 4.7e-55 185.6 5.4 5.2e-55 185.5 5.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_12 PF08461.10 gi|116754998|ref|YP_844116.1| - 6.1 6.9 9.1 0.28 11.2 2.8 2.0 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain Ribosomal_L32e PF01655.18 gi|116754999|ref|YP_844117.1| - 5.5e-34 116.8 0.4 6.8e-34 116.5 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|116755000|ref|YP_844118.1| - 1.2e-30 105.9 3.1 3.1e-19 69.4 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.19 gi|116755001|ref|YP_844119.1| - 2.1e-26 92.4 0.0 2.8e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|116755002|ref|YP_844120.1| - 4e-14 52.1 5.9 4.2e-14 52.0 5.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|116755002|ref|YP_844120.1| - 0.025 14.5 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) zf-P11 PF03854.14 gi|116755002|ref|YP_844120.1| - 0.042 13.5 0.2 0.054 13.2 0.2 1.2 1 0 0 1 1 1 0 P-11 zinc finger C1_2 PF03107.16 gi|116755002|ref|YP_844120.1| - 0.079 13.3 0.9 0.1 12.9 0.9 1.2 1 0 0 1 1 1 0 C1 domain HTH_38 PF13936.6 gi|116755002|ref|YP_844120.1| - 0.091 12.5 0.1 2.3 8.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Ribosomal_L5_C PF00673.21 gi|116755003|ref|YP_844121.1| - 4.3e-24 84.5 0.1 9.1e-24 83.5 0.1 1.6 1 1 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|116755003|ref|YP_844121.1| - 7.2e-18 64.7 0.1 1.4e-17 63.7 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|116755004|ref|YP_844122.1| - 1.2e-19 69.9 0.1 5.3e-19 67.9 0.0 1.9 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|116755004|ref|YP_844122.1| - 8.4e-09 35.4 3.2 1.3e-08 34.8 3.2 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|116755004|ref|YP_844122.1| - 1.1e-06 28.2 0.2 2.1e-06 27.3 0.2 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|116755004|ref|YP_844122.1| - 5.6e-05 23.0 0.0 0.00017 21.4 0.0 1.9 1 0 0 1 1 1 1 KOW motif Ribosomal_L26 PF16906.5 gi|116755005|ref|YP_844123.1| - 2.1e-31 108.2 0.3 2.5e-31 108.0 0.3 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|116755005|ref|YP_844123.1| - 2.3e-07 30.5 1.0 2.3e-07 30.5 1.0 1.6 2 0 0 2 2 2 1 KOW motif DUF4150 PF13665.6 gi|116755005|ref|YP_844123.1| - 0.027 14.6 0.0 0.033 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4150) Ribosomal_L14 PF00238.19 gi|116755006|ref|YP_844124.1| - 4.7e-37 126.8 0.9 5.2e-37 126.6 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|116755007|ref|YP_844125.1| - 6.1e-28 96.7 2.9 7.4e-28 96.5 2.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|116755007|ref|YP_844125.1| - 7.9e-05 23.0 0.2 0.0002 21.7 0.0 1.7 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal zf-C3H1 PF10650.9 gi|116755007|ref|YP_844125.1| - 0.039 13.7 0.7 0.081 12.7 0.7 1.4 1 0 0 1 1 1 0 Putative zinc-finger domain UPF0086 PF01868.16 gi|116755008|ref|YP_844126.1| - 1.2e-23 82.8 0.1 1.3e-23 82.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|116755009|ref|YP_844127.1| - 3.9e-20 71.6 2.7 4.4e-20 71.4 2.7 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein MRP-L47 PF06984.13 gi|116755009|ref|YP_844127.1| - 0.076 13.1 0.9 0.14 12.3 0.9 1.5 1 1 0 1 1 1 0 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) Ribosomal_S3_C PF00189.20 gi|116755010|ref|YP_844128.1| - 7.4e-21 74.5 0.1 1.3e-20 73.7 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|116755010|ref|YP_844128.1| - 3.2e-15 55.7 0.0 5.6e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|116755010|ref|YP_844128.1| - 0.057 13.3 0.2 0.24 11.2 0.1 2.1 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.19 gi|116755011|ref|YP_844129.1| - 2.4e-29 101.6 0.0 2.9e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|116755012|ref|YP_844130.1| - 2.5e-25 88.1 0.2 3.6e-25 87.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.21 gi|116755012|ref|YP_844130.1| - 0.00056 19.1 0.0 0.00057 19.1 0.0 1.1 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Metal_resist PF13801.6 gi|116755012|ref|YP_844130.1| - 0.0031 17.7 1.0 0.0043 17.2 1.0 1.2 1 0 0 1 1 1 1 Heavy-metal resistance Ribosomal_L2_C PF03947.18 gi|116755013|ref|YP_844131.1| - 3.6e-46 156.5 0.5 4.5e-45 152.9 0.6 2.0 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|116755013|ref|YP_844131.1| - 4.6e-17 61.7 0.7 9.6e-17 60.7 0.0 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|116755014|ref|YP_844132.1| - 1e-15 57.8 1.3 3.4e-15 56.2 1.3 1.7 1 1 0 1 1 1 1 Ribosomal protein L23 WhiA_N PF10298.9 gi|116755014|ref|YP_844132.1| - 0.12 12.4 0.1 0.15 12.1 0.1 1.1 1 0 0 1 1 1 0 WhiA N-terminal LAGLIDADG-like domain Ribosomal_L4 PF00573.22 gi|116755015|ref|YP_844133.1| - 9.4e-44 149.4 0.1 1.1e-43 149.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|116755016|ref|YP_844134.1| - 8.7e-92 307.9 0.2 5.1e-91 305.4 0.2 1.8 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|116755017|ref|YP_844135.1| - 8.3e-56 189.6 0.0 1e-55 189.3 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|116755017|ref|YP_844135.1| - 4.4e-05 23.7 0.0 0.06 13.5 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family Band_7 PF01145.25 gi|116755018|ref|YP_844136.1| - 2.8e-36 125.2 3.5 3.8e-36 124.7 3.5 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|116755018|ref|YP_844136.1| - 2.3e-05 24.2 0.1 3.9e-05 23.5 0.1 1.6 1 1 0 1 1 1 1 SPFH domain-Band 7 family Amidohydro_1 PF01979.20 gi|116755018|ref|YP_844136.1| - 0.07 12.4 0.1 0.094 12.0 0.1 1.2 1 0 0 1 1 1 0 Amidohydrolase family NfeD PF01957.18 gi|116755019|ref|YP_844137.1| - 4.9e-15 55.7 0.0 2.1e-14 53.7 0.0 2.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|116755019|ref|YP_844137.1| - 1.9e-07 31.2 0.1 3.3e-07 30.4 0.1 1.3 1 0 0 1 1 1 1 Clp protease ECH_1 PF00378.20 gi|116755019|ref|YP_844137.1| - 0.031 13.6 0.1 0.23 10.7 0.1 2.0 1 1 0 1 1 1 0 Enoyl-CoA hydratase/isomerase DUF1778 PF08681.11 gi|116755019|ref|YP_844137.1| - 0.075 13.0 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) VKOR PF07884.14 gi|116755019|ref|YP_844137.1| - 2.9 8.1 6.5 6.2 7.0 6.5 1.5 1 0 0 1 1 1 0 Vitamin K epoxide reductase family AA_kinase PF00696.28 gi|116755020|ref|YP_844138.1| - 2.3e-47 161.6 1.8 2.7e-47 161.4 1.8 1.0 1 0 0 1 1 1 1 Amino acid kinase family XPG_N PF00752.17 gi|116755020|ref|YP_844138.1| - 0.17 12.4 0.0 0.28 11.7 0.0 1.3 1 0 0 1 1 1 0 XPG N-terminal domain PYC_OADA PF02436.18 gi|116755021|ref|YP_844139.1| - 7.9e-58 195.5 0.0 1.3e-57 194.8 0.0 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|116755021|ref|YP_844139.1| - 2.6e-48 164.9 0.0 3.5e-48 164.5 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|116755021|ref|YP_844139.1| - 5.3e-21 74.2 1.9 1.1e-20 73.2 1.9 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|116755021|ref|YP_844139.1| - 6.4e-11 41.9 0.2 0.00058 19.6 0.2 2.8 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 gi|116755021|ref|YP_844139.1| - 1.2e-05 25.2 0.2 6.6e-05 22.8 0.1 2.1 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_D23 PF16576.5 gi|116755021|ref|YP_844139.1| - 6.6e-05 22.2 0.3 0.011 14.9 0.0 2.5 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|116755021|ref|YP_844139.1| - 0.00034 21.3 0.1 0.064 14.0 0.0 2.7 2 0 0 2 2 2 1 HlyD family secretion protein GCV_H PF01597.19 gi|116755021|ref|YP_844139.1| - 0.0015 18.4 2.0 0.0023 17.8 0.2 2.3 3 0 0 3 3 3 1 Glycine cleavage H-protein Fusion_gly PF00523.18 gi|116755021|ref|YP_844139.1| - 0.036 12.3 0.1 1 7.5 0.0 2.1 2 0 0 2 2 2 0 Fusion glycoprotein F0 Peptidase_M23 PF01551.22 gi|116755021|ref|YP_844139.1| - 0.05 13.8 0.5 3 8.1 0.1 2.9 2 1 1 3 3 3 0 Peptidase family M23 ADH_zinc_N PF00107.26 gi|116755021|ref|YP_844139.1| - 0.057 13.4 0.0 0.21 11.6 0.0 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase DUF2118 PF09891.9 gi|116755021|ref|YP_844139.1| - 0.068 13.1 1.0 0.17 11.9 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) E3_UbLigase_RBR PF18091.1 gi|116755021|ref|YP_844139.1| - 0.12 12.5 0.5 0.51 10.5 0.3 2.0 2 0 0 2 2 2 0 E3 Ubiquitin Ligase RBR C-terminal domain QRPTase_N PF02749.16 gi|116755021|ref|YP_844139.1| - 0.17 12.0 0.1 6.7 6.9 0.0 2.5 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_thermophila_PT_uid58469/NC_008553.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_thermophila_PT_uid58469/NC_008553.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_thermophila_PT_uid58469/NC_008553.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_thermophila_PT_uid58469/NC_008553.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:01:18 2019 # [ok]