# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- LRR_3 PF07725.7 gi|386003072|ref|YP_005064092.1| - 0.03 14.0 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 Leucine Rich Repeat ZZ PF00569.12 gi|386003074|ref|YP_005064094.1| - 0.0022 17.4 0.4 0.0031 17.0 0.2 1.3 1 0 0 1 1 1 1 Zinc finger, ZZ type Prim-Pol PF09250.6 gi|386003076|ref|YP_005064096.1| - 0.00061 19.7 0.0 0.0015 18.4 0.0 1.6 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal RHH_1 PF01402.16 gi|386003082|ref|YP_005064102.1| - 2.5e-08 33.4 0.0 8.6e-08 31.7 0.0 1.9 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Arc PF03869.9 gi|386003082|ref|YP_005064102.1| - 0.00063 19.3 0.0 0.0015 18.0 0.0 1.7 1 0 0 1 1 1 1 Arc-like DNA binding domain RHH_3 PF12651.2 gi|386003082|ref|YP_005064102.1| - 0.0016 18.1 0.1 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain HTH_40 PF14493.1 gi|386003082|ref|YP_005064102.1| - 0.021 15.0 0.3 4.4 7.6 0.0 3.0 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|386003082|ref|YP_005064102.1| - 0.025 14.1 0.4 0.63 9.6 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|386003082|ref|YP_005064102.1| - 0.025 14.7 1.6 0.57 10.3 0.0 2.5 1 1 0 2 2 2 0 Winged helix-turn helix HTH_23 PF13384.1 gi|386003082|ref|YP_005064102.1| - 0.061 12.9 3.0 0.13 11.9 0.0 2.8 3 1 0 3 3 3 0 Homeodomain-like domain HTH_28 PF13518.1 gi|386003082|ref|YP_005064102.1| - 0.065 13.2 2.0 0.8 9.7 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain DUF2510 PF10708.4 gi|386003082|ref|YP_005064102.1| - 0.077 12.4 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2510) HTH_Tnp_ISL3 PF13542.1 gi|386003082|ref|YP_005064102.1| - 0.098 11.8 0.0 0.79 8.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 RuvA_C PF07499.8 gi|386003082|ref|YP_005064102.1| - 0.87 9.8 5.9 5.8 7.1 0.1 3.5 4 0 0 4 4 4 0 RuvA, C-terminal domain DUF2191 PF09957.4 gi|386003085|ref|YP_005064105.1| - 0.1 12.4 0.4 0.87 9.4 0.0 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) SNase PF00565.12 gi|386003086|ref|YP_005064106.1| - 4.7e-10 39.7 0.0 7.8e-10 38.9 0.0 1.4 1 1 0 1 1 1 1 Staphylococcal nuclease homologue Ada_Zn_binding PF02805.11 gi|386003086|ref|YP_005064106.1| - 4.3e-05 23.0 0.1 7e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Metal binding domain of Ada AvrB_AvrC PF05394.6 gi|386003087|ref|YP_005064107.1| - 0.0065 15.4 0.1 0.008 15.1 0.0 1.1 1 0 0 1 1 1 1 Avirulence protein mRNA_cap_C PF03919.10 gi|386003087|ref|YP_005064107.1| - 0.0085 16.4 0.7 0.013 15.8 0.5 1.4 1 0 0 1 1 1 1 mRNA capping enzyme, C-terminal domain N6_N4_Mtase PF01555.13 gi|386003089|ref|YP_005064109.1| - 1.9e-38 132.2 0.0 2.4e-38 131.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|386003089|ref|YP_005064109.1| - 0.0005 20.0 0.0 0.055 13.5 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|386003089|ref|YP_005064109.1| - 0.18 11.3 0.1 3.2 7.3 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 DUF11 PF01345.13 gi|386000718|ref|YP_005919017.1| - 5.2e-18 64.8 0.1 2e-09 37.3 0.0 4.1 3 0 0 3 3 3 3 Domain of unknown function DUF11 Chlam_OMP6 PF03504.8 gi|386000718|ref|YP_005919017.1| - 0.00012 22.2 0.0 0.00069 19.8 0.0 2.3 2 0 0 2 2 2 1 Chlamydia cysteine-rich outer membrane protein 6 DDE_Tnp_IS66 PF03050.9 gi|386000719|ref|YP_005919018.1| - 3.9e-55 186.9 0.0 3.9e-55 186.9 0.0 1.7 2 0 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.2 gi|386000719|ref|YP_005919018.1| - 5.5e-07 29.4 2.4 1.4e-06 28.1 1.7 1.7 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.1 gi|386000719|ref|YP_005919018.1| - 0.00081 19.3 0.0 0.0026 17.7 0.0 1.9 1 0 0 1 1 1 1 DDE domain DZR PF12773.2 gi|386000719|ref|YP_005919018.1| - 0.0082 15.9 0.1 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 Double zinc ribbon Transposase_mut PF00872.13 gi|386000719|ref|YP_005919018.1| - 0.0091 14.5 0.0 2.1 6.8 0.0 2.4 2 0 0 2 2 2 2 Transposase, Mutator family zf-ribbon_3 PF13248.1 gi|386000719|ref|YP_005919018.1| - 0.027 13.6 1.8 3.2 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|386000719|ref|YP_005919018.1| - 0.031 13.9 1.2 6.7 6.4 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|386000719|ref|YP_005919018.1| - 0.083 12.5 1.0 0.45 10.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|386000719|ref|YP_005919018.1| - 0.1 11.7 0.6 12 5.2 0.1 2.6 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.1 gi|386000719|ref|YP_005919018.1| - 0.11 12.0 1.1 0.71 9.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF972 PF06156.8 gi|386000719|ref|YP_005919018.1| - 0.14 12.4 3.6 0.54 10.6 1.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF972) zinc_ribbon_2 PF13240.1 gi|386000719|ref|YP_005919018.1| - 0.17 11.4 1.0 6.9 6.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TMF_DNA_bd PF12329.3 gi|386000719|ref|YP_005919018.1| - 0.18 11.6 6.7 0.14 12.0 2.7 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DNA_ligase_ZBD PF03119.11 gi|386000719|ref|YP_005919018.1| - 0.18 11.5 2.6 8.8 6.1 0.2 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DivIC PF04977.10 gi|386000719|ref|YP_005919018.1| - 0.19 11.2 3.9 0.6 9.6 2.7 1.8 1 0 0 1 1 1 0 Septum formation initiator DivIVA PF05103.8 gi|386000719|ref|YP_005919018.1| - 0.25 11.4 3.1 0.28 11.2 0.8 2.0 2 0 0 2 2 2 0 DivIVA protein DUF737 PF05300.6 gi|386000719|ref|YP_005919018.1| - 0.42 10.5 5.0 0.73 9.7 3.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF737) DUF904 PF06005.7 gi|386000719|ref|YP_005919018.1| - 1.1 9.5 8.3 0.31 11.3 1.6 2.8 3 1 0 3 3 2 0 Protein of unknown function (DUF904) Cep57_CLD_2 PF14197.1 gi|386000719|ref|YP_005919018.1| - 5.8 6.9 9.6 2.3 8.1 1.3 3.0 3 0 0 3 3 3 0 Centrosome localisation domain of PPC89 Tubulin PF00091.20 gi|386000720|ref|YP_005919019.1| - 2.9e-30 105.7 0.0 4.5e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|386000720|ref|YP_005919019.1| - 0.024 13.5 0.0 0.11 11.4 0.0 2.1 1 1 1 2 2 2 0 Tubulin like Gp-FAR-1 PF05823.7 gi|386000720|ref|YP_005919019.1| - 0.064 13.2 0.4 0.13 12.2 0.3 1.4 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DUF11 PF01345.13 gi|386000721|ref|YP_005919020.1| - 1.5e-18 66.5 3.3 1.7e-12 47.1 0.6 2.4 2 0 0 2 2 2 2 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|386000721|ref|YP_005919020.1| - 1.5e-16 60.1 0.7 4.1e-09 35.8 0.2 2.2 1 1 1 2 2 2 2 Translocon-associated protein beta (TRAPB) CARDB PF07705.6 gi|386000721|ref|YP_005919020.1| - 5.9e-13 48.7 0.1 1.7e-05 24.8 0.0 2.3 2 0 0 2 2 2 2 CARDB NPCBM_assoc PF10633.4 gi|386000721|ref|YP_005919020.1| - 5.7e-06 26.2 0.7 0.089 12.8 0.1 3.7 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase BatD PF13584.1 gi|386000721|ref|YP_005919020.1| - 2.3e-05 23.1 0.6 0.00038 19.1 0.1 2.1 2 0 0 2 2 2 1 Oxygen tolerance DUF2393 PF09624.5 gi|386000721|ref|YP_005919020.1| - 0.00045 19.7 0.0 0.088 12.3 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2393) Transglut_C PF00927.17 gi|386000721|ref|YP_005919020.1| - 0.015 15.2 0.0 9.7 6.2 0.0 2.7 2 1 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain QRPTase_C PF01729.14 gi|386000722|ref|YP_005919021.1| - 1.2e-54 184.3 0.1 2.1e-54 183.5 0.0 1.4 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|386000722|ref|YP_005919021.1| - 6.3e-19 67.5 0.0 1.4e-18 66.4 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain TMP-TENI PF02581.12 gi|386000722|ref|YP_005919021.1| - 0.0026 16.9 0.1 0.0089 15.1 0.0 1.8 1 1 1 2 2 2 1 Thiamine monophosphate synthase/TENI DUF108 PF01958.13 gi|386000723|ref|YP_005919022.1| - 2.3e-33 114.2 1.0 5e-33 113.1 0.7 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|386000723|ref|YP_005919022.1| - 2.3e-22 79.5 0.3 4.3e-22 78.7 0.1 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|386000723|ref|YP_005919022.1| - 2.7e-07 30.5 0.0 4.6e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.12 gi|386000723|ref|YP_005919022.1| - 3.4e-06 27.3 0.2 6.5e-06 26.4 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|386000723|ref|YP_005919022.1| - 6.4e-05 23.4 0.0 0.00015 22.2 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|386000723|ref|YP_005919022.1| - 0.00065 19.9 0.1 0.0013 18.9 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|386000723|ref|YP_005919022.1| - 0.00085 18.5 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|386000723|ref|YP_005919022.1| - 0.0021 17.0 0.0 0.0034 16.4 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|386000723|ref|YP_005919022.1| - 0.0023 17.9 0.3 0.13 12.3 0.1 2.9 3 0 0 3 3 3 1 TrkA-N domain NAD_binding_2 PF03446.10 gi|386000723|ref|YP_005919022.1| - 0.0056 16.5 0.0 0.0091 15.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NosD PF05048.8 gi|386000724|ref|YP_005919023.1| - 2.7e-41 141.2 24.7 1.2e-22 80.2 8.6 2.4 1 1 0 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|386000724|ref|YP_005919023.1| - 2.5e-27 95.5 33.4 2.4e-15 56.6 5.1 2.7 1 1 2 3 3 3 3 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|386000724|ref|YP_005919023.1| - 6.9e-05 23.0 13.8 0.00095 19.3 0.3 3.5 1 1 1 2 2 2 1 Pectate lyase superfamily protein AICARFT_IMPCHas PF01808.13 gi|386000725|ref|YP_005919024.1| - 1.3e-76 257.7 0.0 1.6e-76 257.3 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme DUF167 PF02594.11 gi|386000726|ref|YP_005919025.1| - 5.2e-14 51.9 0.0 6.1e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DegT_DnrJ_EryC1 PF01041.12 gi|386000726|ref|YP_005919025.1| - 0.0048 15.9 0.0 0.0076 15.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Toprim_4 PF13662.1 gi|386000727|ref|YP_005919026.1| - 2.7e-05 24.1 0.1 4.9e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|386000727|ref|YP_005919026.1| - 0.00029 20.7 0.1 0.0035 17.2 0.1 2.1 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|386000727|ref|YP_005919026.1| - 0.0035 17.6 0.0 0.0046 17.2 0.0 1.3 1 0 0 1 1 1 1 Toprim-like NTPase_1 PF03266.10 gi|386000728|ref|YP_005919027.1| - 1.5e-48 164.6 0.0 1.7e-48 164.5 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.4 gi|386000728|ref|YP_005919027.1| - 1.9e-06 27.3 0.5 2.3e-06 27.0 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_16 PF13191.1 gi|386000728|ref|YP_005919027.1| - 3.3e-05 23.9 0.8 5.9e-05 23.1 0.5 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|386000728|ref|YP_005919027.1| - 7.9e-05 22.4 1.1 0.015 15.0 0.1 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|386000728|ref|YP_005919027.1| - 0.00041 20.4 0.4 0.0035 17.4 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|386000728|ref|YP_005919027.1| - 0.00053 20.8 1.0 0.001 19.8 0.7 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|386000728|ref|YP_005919027.1| - 0.0014 18.3 0.9 0.0014 18.3 0.6 2.4 3 1 1 4 4 3 1 Part of AAA domain AAA_18 PF13238.1 gi|386000728|ref|YP_005919027.1| - 0.0015 18.8 0.8 0.0032 17.7 0.6 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|386000728|ref|YP_005919027.1| - 0.002 17.9 0.0 0.99 9.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|386000728|ref|YP_005919027.1| - 0.0028 16.4 0.2 0.0048 15.7 0.2 1.4 1 0 0 1 1 1 1 ArgK protein AAA_33 PF13671.1 gi|386000728|ref|YP_005919027.1| - 0.0033 17.3 0.0 0.0091 15.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|386000728|ref|YP_005919027.1| - 0.011 15.2 0.6 0.017 14.6 0.1 1.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|386000728|ref|YP_005919027.1| - 0.012 15.6 1.7 0.012 15.5 0.2 1.7 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|386000728|ref|YP_005919027.1| - 0.014 15.3 0.1 0.034 14.1 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|386000728|ref|YP_005919027.1| - 0.031 13.4 0.1 0.042 13.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|386000728|ref|YP_005919027.1| - 0.037 14.2 0.0 0.065 13.4 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2608 PF11019.3 gi|386000728|ref|YP_005919027.1| - 0.04 12.8 0.0 0.051 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2608) AAA_25 PF13481.1 gi|386000728|ref|YP_005919027.1| - 0.081 12.3 3.5 0.93 8.8 2.4 2.3 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|386000728|ref|YP_005919027.1| - 0.13 12.7 0.1 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|386000728|ref|YP_005919027.1| - 0.13 11.9 0.1 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|386000728|ref|YP_005919027.1| - 0.14 11.7 0.1 3.2 7.2 0.0 2.4 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|386000728|ref|YP_005919027.1| - 0.14 12.4 0.1 0.2 11.9 0.1 1.4 1 1 0 1 1 1 0 ABC transporter NACHT PF05729.7 gi|386000728|ref|YP_005919027.1| - 0.15 11.7 0.2 0.26 10.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|386000728|ref|YP_005919027.1| - 0.27 10.8 3.5 2.5 7.6 2.4 2.1 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|386000728|ref|YP_005919027.1| - 0.31 10.4 1.5 1.3 8.3 0.1 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain HHH_5 PF14520.1 gi|386000728|ref|YP_005919027.1| - 6.7 6.9 6.2 27 5.0 3.0 2.7 2 2 0 2 2 2 0 Helix-hairpin-helix domain UPF0051 PF01458.12 gi|386000729|ref|YP_005919028.1| - 8.9e-49 165.9 0.0 1.1e-48 165.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|386000730|ref|YP_005919029.1| - 2.1e-24 86.4 0.0 3.2e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386000730|ref|YP_005919029.1| - 2.3e-09 37.6 0.0 0.00029 20.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|386000730|ref|YP_005919029.1| - 0.0021 17.3 0.1 0.37 9.9 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|386000730|ref|YP_005919029.1| - 0.0026 17.9 0.1 0.0069 16.5 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|386000730|ref|YP_005919029.1| - 0.0073 15.8 0.1 0.013 14.9 0.1 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|386000730|ref|YP_005919029.1| - 0.0085 15.5 0.2 0.016 14.7 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|386000730|ref|YP_005919029.1| - 0.014 15.7 0.4 0.025 14.9 0.3 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|386000730|ref|YP_005919029.1| - 0.018 14.4 0.2 0.027 13.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|386000730|ref|YP_005919029.1| - 0.036 13.1 0.0 1.3 8.1 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin DUF258 PF03193.11 gi|386000730|ref|YP_005919029.1| - 0.044 12.9 0.0 0.07 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|386000730|ref|YP_005919029.1| - 0.062 12.9 0.1 0.096 12.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|386000730|ref|YP_005919029.1| - 0.063 12.9 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_18 PF13238.1 gi|386000730|ref|YP_005919029.1| - 0.073 13.3 0.3 9.7 6.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|386000730|ref|YP_005919029.1| - 0.093 12.6 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|386000730|ref|YP_005919029.1| - 0.14 12.2 0.1 0.34 11.0 0.1 1.9 2 1 0 2 2 1 0 AAA domain AAA_14 PF13173.1 gi|386000730|ref|YP_005919029.1| - 0.14 12.0 0.3 0.41 10.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|386000730|ref|YP_005919029.1| - 0.16 11.5 0.2 0.27 10.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain GXGXG PF01493.14 gi|386000731|ref|YP_005919030.1| - 4.6e-35 120.4 24.8 7.7e-22 77.2 5.0 2.7 1 1 1 2 2 2 2 GXGXG motif DUF373 PF04123.8 gi|386000732|ref|YP_005919031.1| - 3.2e-116 388.1 5.8 3.7e-116 387.9 4.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) ThiC PF01964.13 gi|386000734|ref|YP_005919033.1| - 5e-176 585.3 0.2 5.7e-176 585.1 0.1 1.0 1 0 0 1 1 1 1 ThiC family Metalloenzyme PF01676.13 gi|386000735|ref|YP_005919034.1| - 1.8e-13 50.4 0.0 4.5e-13 49.1 0.0 1.6 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|386000735|ref|YP_005919034.1| - 2.5e-10 40.2 0.0 1.1e-08 34.8 0.0 2.4 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|386000735|ref|YP_005919034.1| - 3.1e-06 26.6 0.0 6e-06 25.6 0.0 1.6 1 1 0 1 1 1 1 Sulfatase Alk_phosphatase PF00245.15 gi|386000735|ref|YP_005919034.1| - 0.012 14.3 0.0 0.052 12.2 0.0 1.8 2 0 0 2 2 2 0 Alkaline phosphatase Fae PF08714.6 gi|386000736|ref|YP_005919035.1| - 3.7e-71 237.9 0.1 6.7e-71 237.1 0.1 1.4 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|386000736|ref|YP_005919035.1| - 2.7e-22 79.2 0.3 5.2e-22 78.3 0.2 1.5 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|386000736|ref|YP_005919035.1| - 4.8e-08 32.3 0.2 9.5e-08 31.3 0.1 1.5 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|386000736|ref|YP_005919035.1| - 8.7e-06 25.1 0.8 0.0013 18.0 0.2 2.2 2 0 0 2 2 2 2 PcrB family FMN_dh PF01070.13 gi|386000736|ref|YP_005919035.1| - 0.00033 19.6 2.3 0.00058 18.8 1.6 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase DUF1446 PF07287.6 gi|386000736|ref|YP_005919035.1| - 0.0051 15.3 0.3 0.008 14.6 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1446) IMPDH PF00478.20 gi|386000736|ref|YP_005919035.1| - 0.022 13.6 0.2 0.035 12.9 0.1 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain QRPTase_C PF01729.14 gi|386000736|ref|YP_005919035.1| - 0.035 13.6 0.9 0.08 12.4 0.4 1.8 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain ATP-sulfurylase PF01747.12 gi|386000736|ref|YP_005919035.1| - 0.046 13.0 0.0 0.081 12.2 0.0 1.4 1 0 0 1 1 1 0 ATP-sulfurylase DsbD PF02683.10 gi|386000737|ref|YP_005919036.1| - 5.8e-17 61.9 14.0 8.5e-17 61.4 9.7 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|386000737|ref|YP_005919036.1| - 2.3e-09 37.2 23.3 8.1e-09 35.5 15.8 2.0 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Glutaredoxin PF00462.19 gi|386000737|ref|YP_005919036.1| - 9.5e-05 22.3 0.0 0.00018 21.4 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.9 gi|386000737|ref|YP_005919036.1| - 0.078 13.2 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|386000737|ref|YP_005919036.1| - 0.099 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin domain TGFb_propeptide PF00688.13 gi|386000738|ref|YP_005919037.1| - 0.024 13.9 0.0 0.033 13.4 0.0 1.1 1 0 0 1 1 1 0 TGF-beta propeptide NosD PF05048.8 gi|386000739|ref|YP_005919038.1| - 1.3e-43 148.8 29.4 1.4e-25 89.8 6.3 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|386000739|ref|YP_005919038.1| - 7.5e-38 129.7 59.6 1.3e-24 86.7 16.1 2.7 1 1 2 3 3 3 3 Right handed beta helix region DUF1565 PF07602.6 gi|386000739|ref|YP_005919038.1| - 2.2e-06 27.0 24.8 0.00026 20.2 6.2 3.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Rhodanese PF00581.15 gi|386000740|ref|YP_005919039.1| - 1.1e-21 77.3 0.0 3.3e-10 40.3 0.0 2.6 3 0 0 3 3 3 2 Rhodanese-like domain FlgD_ig PF13860.1 gi|386000740|ref|YP_005919039.1| - 0.035 13.8 0.1 0.083 12.6 0.0 1.6 1 0 0 1 1 1 0 FlgD Ig-like domain zf-4CXXC_R1 PF10497.4 gi|386000740|ref|YP_005919039.1| - 0.18 11.9 0.0 0.35 11.0 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 zf-RanBP PF00641.13 gi|386000740|ref|YP_005919039.1| - 0.47 9.6 3.6 0.15 11.2 0.2 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Peptidase_S8 PF00082.17 gi|386000741|ref|YP_005919040.1| - 1.3e-53 182.0 0.1 1.7e-53 181.6 0.0 1.2 1 0 0 1 1 1 1 Subtilase family Big_3_4 PF13754.1 gi|386000741|ref|YP_005919040.1| - 2.6e-06 27.6 2.3 0.085 13.1 0.0 4.0 3 1 0 3 3 3 2 Bacterial Ig-like domain (group 3) Y_Y_Y PF07495.8 gi|386000741|ref|YP_005919040.1| - 0.092 12.5 0.0 14 5.5 0.0 2.4 2 0 0 2 2 2 0 Y_Y_Y domain Aldolase_II PF00596.16 gi|386000742|ref|YP_005919041.1| - 6.3e-35 120.4 0.2 6.9e-35 120.3 0.2 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain CBS PF00571.23 gi|386000743|ref|YP_005919042.1| - 4.1e-33 112.9 3.4 1.1e-15 57.1 0.1 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|386000743|ref|YP_005919042.1| - 1.2e-17 63.4 13.4 2.1e-11 43.1 3.5 2.6 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|386000743|ref|YP_005919042.1| - 0.00018 20.9 3.6 0.00018 20.9 2.5 2.3 2 0 0 2 2 2 1 Peptidase M50B-like PB1 PF00564.19 gi|386000743|ref|YP_005919042.1| - 0.087 12.4 0.0 0.22 11.1 0.0 1.7 1 0 0 1 1 1 0 PB1 domain TraB PF01963.12 gi|386000744|ref|YP_005919043.1| - 1.4e-50 172.1 4.5 3.2e-50 170.9 3.1 1.5 1 1 0 1 1 1 1 TraB family Tim44 PF04280.10 gi|386000744|ref|YP_005919043.1| - 0.017 15.0 0.1 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 Tim44-like domain F420_oxidored PF03807.12 gi|386000745|ref|YP_005919044.1| - 2.1e-18 66.5 0.1 3.5e-18 65.8 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|386000745|ref|YP_005919044.1| - 0.0011 19.2 0.0 0.0019 18.5 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|386000745|ref|YP_005919044.1| - 0.017 14.8 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Saccharop_dh PF03435.13 gi|386000745|ref|YP_005919044.1| - 0.019 13.9 0.0 0.027 13.4 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|386000745|ref|YP_005919044.1| - 0.09 12.7 0.1 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding adh_short PF00106.20 gi|386000745|ref|YP_005919044.1| - 0.42 10.5 2.3 1.3 8.8 0.2 2.1 2 0 0 2 2 2 0 short chain dehydrogenase TRM PF02005.11 gi|386000746|ref|YP_005919045.1| - 5.7e-101 338.1 0.0 6.9e-101 337.8 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.9 gi|386000746|ref|YP_005919045.1| - 0.00093 18.6 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|386000746|ref|YP_005919045.1| - 0.0099 15.9 1.0 0.018 15.0 0.7 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386000746|ref|YP_005919045.1| - 0.012 15.2 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|386000746|ref|YP_005919045.1| - 0.017 14.5 0.1 0.027 13.8 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|386000746|ref|YP_005919045.1| - 0.088 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein zinc_ribbon_2 PF13240.1 gi|386000747|ref|YP_005919046.1| - 0.00046 19.5 5.0 0.017 14.6 0.8 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-tcix PF14952.1 gi|386000747|ref|YP_005919046.1| - 0.0033 16.7 1.7 0.041 13.2 0.4 2.1 2 0 0 2 2 2 1 Putative treble-clef, zinc-finger, Zn-binding zf-ribbon_3 PF13248.1 gi|386000747|ref|YP_005919046.1| - 0.0079 15.3 5.8 0.034 13.3 0.4 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|386000747|ref|YP_005919046.1| - 0.0097 15.3 1.4 1.2 8.6 0.1 2.2 2 0 0 2 2 2 1 Cysteine-rich KTR zf-TFIIB PF13453.1 gi|386000747|ref|YP_005919046.1| - 0.01 15.0 4.7 0.031 13.4 3.2 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger Terminase_GpA PF05876.7 gi|386000747|ref|YP_005919046.1| - 0.012 14.0 1.3 0.013 13.8 0.9 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) A2L_zn_ribbon PF08792.5 gi|386000747|ref|YP_005919046.1| - 0.019 14.4 3.9 1.2 8.6 0.3 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|386000747|ref|YP_005919046.1| - 0.025 14.3 4.3 0.12 12.2 2.9 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain RecR PF02132.10 gi|386000747|ref|YP_005919046.1| - 0.027 13.8 1.9 2 7.9 0.0 2.4 2 1 0 2 2 2 0 RecR protein DZR PF12773.2 gi|386000747|ref|YP_005919046.1| - 0.028 14.2 4.0 0.068 13.0 2.7 1.6 1 1 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|386000747|ref|YP_005919046.1| - 0.041 13.5 3.0 2 8.1 0.4 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF164 PF02591.10 gi|386000747|ref|YP_005919046.1| - 0.056 13.2 0.8 9.2 6.1 0.0 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain HypA PF01155.14 gi|386000747|ref|YP_005919046.1| - 0.056 13.1 0.5 0.061 13.0 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|386000747|ref|YP_005919046.1| - 0.093 12.4 3.9 2.5 7.8 0.7 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ISL3 PF14690.1 gi|386000747|ref|YP_005919046.1| - 0.1 12.6 1.5 2.6 8.1 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|386000747|ref|YP_005919046.1| - 0.12 11.9 2.1 0.12 11.9 1.5 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF2082 PF09855.4 gi|386000747|ref|YP_005919046.1| - 0.24 11.2 2.0 11 5.9 0.1 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF1610 PF07754.6 gi|386000747|ref|YP_005919046.1| - 0.57 10.3 9.6 3.4 7.8 1.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Nudix_N_2 PF14803.1 gi|386000747|ref|YP_005919046.1| - 0.62 9.8 6.4 0.36 10.5 0.5 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF3797 PF12677.2 gi|386000747|ref|YP_005919046.1| - 1.4 8.6 3.7 7.1 6.3 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) PhnA_Zn_Ribbon PF08274.7 gi|386000747|ref|YP_005919046.1| - 1.5 8.6 7.1 12 5.7 4.9 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon NOB1_Zn_bind PF08772.6 gi|386000747|ref|YP_005919046.1| - 1.7 8.5 6.1 1 9.2 0.7 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_5 PF13719.1 gi|386000747|ref|YP_005919046.1| - 2 8.0 4.7 17 5.0 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|386000747|ref|YP_005919046.1| - 3.2 7.4 7.5 3.3 7.4 0.4 2.2 2 0 0 2 2 2 0 HIT zinc finger Acetone_carb_G PF08882.6 gi|386000747|ref|YP_005919046.1| - 4.6 7.2 6.6 7 6.7 0.5 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit TFIIS_C PF01096.13 gi|386000747|ref|YP_005919046.1| - 6 6.5 7.3 5.7 6.6 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|386000747|ref|YP_005919046.1| - 6.9 6.0 7.2 22 4.4 0.1 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.11 gi|386000747|ref|YP_005919046.1| - 8.3 6.2 10.2 3 7.6 3.5 2.6 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1119 PF06550.6 gi|386000748|ref|YP_005919047.1| - 2.3e-78 263.2 13.2 3e-78 262.8 9.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) DUF2304 PF10066.4 gi|386000748|ref|YP_005919047.1| - 9 6.1 8.1 3.3 7.5 2.4 2.5 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2304) CYTH PF01928.16 gi|386000749|ref|YP_005919048.1| - 2.2e-32 112.2 0.3 2.4e-32 112.0 0.2 1.0 1 0 0 1 1 1 1 CYTH domain tRNA-synt_1 PF00133.17 gi|386000750|ref|YP_005919049.1| - 2.5e-128 428.7 0.0 2.7e-127 425.3 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|386000750|ref|YP_005919049.1| - 4.6e-34 117.3 0.0 9.4e-34 116.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|386000750|ref|YP_005919049.1| - 1.4e-24 86.5 0.0 3.3e-14 52.3 0.0 2.8 2 1 1 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|386000750|ref|YP_005919049.1| - 2.8e-06 26.6 0.0 0.012 14.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|386000750|ref|YP_005919049.1| - 0.00027 20.3 0.0 0.00059 19.1 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DZR PF12773.2 gi|386000750|ref|YP_005919049.1| - 0.0052 16.5 1.3 0.61 9.9 0.1 3.1 3 0 0 3 3 3 1 Double zinc ribbon zf-ISL3 PF14690.1 gi|386000750|ref|YP_005919049.1| - 0.033 14.2 1.3 16 5.6 0.0 3.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|386000750|ref|YP_005919049.1| - 0.048 12.8 6.5 6.3 6.1 0.4 3.5 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.14 gi|386000750|ref|YP_005919049.1| - 0.15 11.7 0.1 2.2 8.0 0.0 2.5 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family tRNA-synt_1c PF00749.16 gi|386000750|ref|YP_005919049.1| - 0.16 10.5 0.2 13 4.3 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain IBR PF01485.16 gi|386000750|ref|YP_005919049.1| - 0.3 10.9 2.1 6.6 6.6 0.0 3.1 3 0 0 3 3 3 0 IBR domain Nudix_N_2 PF14803.1 gi|386000750|ref|YP_005919049.1| - 0.94 9.2 5.5 18 5.1 0.0 3.4 3 0 0 3 3 3 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|386000750|ref|YP_005919049.1| - 1.7 8.2 5.2 2.8 7.5 0.0 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|386000750|ref|YP_005919049.1| - 1.8 8.5 4.8 26 4.8 2.1 2.8 2 1 0 2 2 2 0 Zinc ribbon domain DUF367 PF04034.8 gi|386000751|ref|YP_005919050.1| - 6.6e-46 155.0 0.0 7.8e-46 154.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|386000751|ref|YP_005919050.1| - 5.4e-13 48.2 0.2 8.6e-13 47.6 0.1 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Glyco_trans_1_4 PF13692.1 gi|386000751|ref|YP_005919050.1| - 0.0081 16.3 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 HSP20 PF00011.16 gi|386000752|ref|YP_005919051.1| - 3.4e-24 84.6 2.6 4.3e-24 84.3 1.8 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family DUF1380 PF07128.7 gi|386000752|ref|YP_005919051.1| - 0.00051 19.8 0.2 0.00082 19.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1380) CS PF04969.11 gi|386000752|ref|YP_005919051.1| - 0.00095 19.6 0.0 0.0017 18.8 0.0 1.4 1 0 0 1 1 1 1 CS domain GvpH PF05455.6 gi|386000752|ref|YP_005919051.1| - 0.089 12.4 1.9 0.13 11.8 1.3 1.3 1 0 0 1 1 1 0 GvpH DHBP_synthase PF00926.14 gi|386000753|ref|YP_005919052.1| - 1.1e-83 279.2 0.4 1.5e-83 278.8 0.3 1.2 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.15 gi|386000753|ref|YP_005919052.1| - 1.3e-77 258.7 0.0 5.5e-77 256.7 0.0 1.9 2 0 0 2 2 2 1 GTP cyclohydrolase II Peptidase_S8 PF00082.17 gi|386000754|ref|YP_005919053.1| - 1.4e-25 89.9 0.5 2.3e-25 89.3 0.3 1.2 1 0 0 1 1 1 1 Subtilase family NosD PF05048.8 gi|386000755|ref|YP_005919054.1| - 1.1e-78 263.6 166.2 2.2e-19 69.5 16.2 4.9 1 1 4 5 5 5 5 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|386000755|ref|YP_005919054.1| - 2.1e-68 229.0 219.9 4.5e-19 68.7 21.6 5.3 2 1 4 6 6 6 6 Right handed beta helix region TPR_12 PF13424.1 gi|386000759|ref|YP_005919058.1| - 4.6e-69 228.3 30.9 1.4e-13 50.5 0.1 7.4 5 1 5 10 10 10 9 Tetratricopeptide repeat TPR_10 PF13374.1 gi|386000759|ref|YP_005919058.1| - 3.9e-37 125.1 10.8 4.8e-05 23.1 0.0 11.3 11 0 0 11 11 11 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386000759|ref|YP_005919058.1| - 4.6e-35 116.7 25.1 0.0033 17.2 0.0 12.3 12 0 0 12 12 12 9 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386000759|ref|YP_005919058.1| - 1.8e-24 83.5 26.4 0.0026 17.4 0.0 11.2 11 0 0 11 11 11 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386000759|ref|YP_005919058.1| - 1.1e-22 79.4 16.5 0.00053 19.5 0.0 8.5 2 1 9 11 11 11 9 TPR repeat TPR_1 PF00515.23 gi|386000759|ref|YP_005919058.1| - 1.5e-19 68.7 17.2 0.1 12.2 0.0 10.8 11 0 0 11 11 11 6 Tetratricopeptide repeat TPR_4 PF07721.9 gi|386000759|ref|YP_005919058.1| - 1.1e-15 56.4 26.5 0.054 13.9 0.2 10.7 10 0 0 10 10 10 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386000759|ref|YP_005919058.1| - 5.2e-14 50.8 24.7 0.014 15.0 0.3 10.4 11 0 0 11 11 10 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386000759|ref|YP_005919058.1| - 9.3e-12 44.1 2.0 5 7.5 0.0 10.4 10 1 0 10 10 10 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|386000759|ref|YP_005919058.1| - 1.3e-11 44.2 0.5 0.012 15.4 0.0 6.3 1 1 4 6 6 6 3 Anaphase-promoting complex subunit 5 TPR_3 PF07720.7 gi|386000759|ref|YP_005919058.1| - 3e-11 42.8 0.5 4.1 7.2 0.0 8.3 9 0 0 9 9 8 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386000759|ref|YP_005919058.1| - 1.4e-10 41.4 17.2 0.023 15.3 0.0 7.9 7 2 0 8 8 8 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386000759|ref|YP_005919058.1| - 1e-07 31.9 15.7 3.7 8.2 0.0 9.7 11 0 0 11 11 9 1 Tetratricopeptide repeat SNAP PF14938.1 gi|386000759|ref|YP_005919058.1| - 2.6e-06 26.8 0.0 0.083 12.0 0.0 3.3 1 1 1 3 3 3 2 Soluble NSF attachment protein, SNAP Apc3 PF12895.2 gi|386000759|ref|YP_005919058.1| - 1.1e-05 25.5 0.9 2.9 8.0 0.0 5.5 2 1 5 7 7 7 1 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.13 gi|386000759|ref|YP_005919058.1| - 0.00012 21.9 15.8 0.0094 15.8 0.7 6.6 7 1 1 8 8 7 1 MIT (microtubule interacting and transport) domain V-ATPase_H_C PF11698.3 gi|386000759|ref|YP_005919058.1| - 0.00013 21.8 0.0 27 4.6 0.0 5.6 2 2 4 6 6 6 0 V-ATPase subunit H TPR_14 PF13428.1 gi|386000759|ref|YP_005919058.1| - 0.00018 21.8 22.4 8.9 7.2 1.0 10.4 11 1 1 12 12 11 0 Tetratricopeptide repeat DUF2019 PF09450.5 gi|386000759|ref|YP_005919058.1| - 0.00083 19.1 1.7 16 5.4 0.0 5.9 2 2 6 8 8 8 0 Domain of unknown function (DUF2019) DUF3151 PF11349.3 gi|386000759|ref|YP_005919058.1| - 0.017 15.0 1.5 3.5 7.6 0.0 4.3 3 2 2 5 5 5 0 Protein of unknown function (DUF3151) AAA_16 PF13191.1 gi|386000760|ref|YP_005919059.1| - 2e-07 31.1 0.2 6.6e-07 29.4 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|386000760|ref|YP_005919059.1| - 0.0073 16.4 0.9 0.62 10.1 0.2 2.8 2 1 0 2 2 2 1 AAA domain G-alpha PF00503.15 gi|386000760|ref|YP_005919059.1| - 0.027 13.1 0.0 0.081 11.5 0.0 1.8 1 1 0 1 1 1 0 G-protein alpha subunit AAA_14 PF13173.1 gi|386000760|ref|YP_005919059.1| - 0.034 14.0 1.1 0.4 10.5 0.0 2.5 1 1 1 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|386000760|ref|YP_005919059.1| - 0.042 12.4 0.0 3.5 6.1 0.0 2.4 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain JmjN PF02375.12 gi|386000760|ref|YP_005919059.1| - 0.052 13.0 0.3 10 5.7 0.0 2.6 2 0 0 2 2 2 0 jmjN domain AAA_29 PF13555.1 gi|386000760|ref|YP_005919059.1| - 0.075 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain KAP_NTPase PF07693.9 gi|386000760|ref|YP_005919059.1| - 0.091 11.7 5.5 0.049 12.6 1.8 1.9 2 1 0 2 2 2 0 KAP family P-loop domain Pyridox_oxidase PF01243.15 gi|386000761|ref|YP_005919060.1| - 1.5e-18 66.5 0.0 2e-18 66.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.2 gi|386000761|ref|YP_005919060.1| - 0.0064 16.7 0.0 0.0098 16.1 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|386000762|ref|YP_005919061.1| - 1.3e-14 53.9 0.0 1.7e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.2 gi|386000762|ref|YP_005919061.1| - 0.016 15.4 0.0 0.023 15.0 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|386000762|ref|YP_005919061.1| - 0.084 12.4 0.0 0.086 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) GATase_3 PF07685.9 gi|386000763|ref|YP_005919062.1| - 1.8e-31 108.8 0.0 2.7e-31 108.3 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|386000763|ref|YP_005919062.1| - 2.7e-20 72.5 0.1 5.1e-20 71.7 0.1 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|386000763|ref|YP_005919062.1| - 7.6e-17 61.5 0.4 1.1e-12 48.0 0.0 2.3 1 1 0 2 2 2 2 AAA domain SNO PF01174.14 gi|386000763|ref|YP_005919062.1| - 0.052 13.1 0.0 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 SNO glutamine amidotransferase family DUF4066 PF13278.1 gi|386000763|ref|YP_005919062.1| - 0.063 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase Peptidase_C26 PF07722.8 gi|386000763|ref|YP_005919062.1| - 0.08 12.3 0.0 0.29 10.5 0.0 1.7 1 1 0 1 1 1 0 Peptidase C26 Fer4_NifH PF00142.13 gi|386000764|ref|YP_005919063.1| - 7.8e-91 304.0 0.1 9.6e-91 303.7 0.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|386000764|ref|YP_005919063.1| - 8.1e-11 41.6 0.0 1.1e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|386000764|ref|YP_005919063.1| - 2.9e-06 26.5 0.5 4.9e-06 25.8 0.4 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase CPSase_L_chain PF00289.17 gi|386000764|ref|YP_005919063.1| - 0.00021 21.3 0.3 0.035 14.1 0.0 2.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ArgK PF03308.11 gi|386000764|ref|YP_005919063.1| - 0.0014 17.4 0.2 0.0021 16.8 0.1 1.2 1 0 0 1 1 1 1 ArgK protein AAA_31 PF13614.1 gi|386000764|ref|YP_005919063.1| - 0.0021 17.9 0.0 0.0038 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|386000764|ref|YP_005919063.1| - 0.0048 16.3 0.0 0.0071 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain ATP_bind_1 PF03029.12 gi|386000764|ref|YP_005919063.1| - 0.0069 15.9 0.3 2 7.9 0.0 2.1 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein MipZ PF09140.6 gi|386000764|ref|YP_005919063.1| - 0.0079 15.3 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_16 PF13191.1 gi|386000764|ref|YP_005919063.1| - 0.0093 15.9 0.0 0.063 13.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|386000764|ref|YP_005919063.1| - 0.015 14.7 0.1 0.034 13.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|386000764|ref|YP_005919063.1| - 0.021 13.7 0.2 0.031 13.1 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF87 PF01935.12 gi|386000764|ref|YP_005919063.1| - 0.022 14.5 0.0 0.041 13.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|386000764|ref|YP_005919063.1| - 0.046 13.2 0.1 0.068 12.6 0.1 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|386000764|ref|YP_005919063.1| - 0.058 13.5 0.0 0.33 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.8 gi|386000764|ref|YP_005919063.1| - 0.069 12.0 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MobB PF03205.9 gi|386000764|ref|YP_005919063.1| - 0.081 12.6 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|386000764|ref|YP_005919063.1| - 0.084 12.2 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|386000764|ref|YP_005919063.1| - 0.11 12.3 0.1 1 9.1 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain NTPase_1 PF03266.10 gi|386000764|ref|YP_005919063.1| - 0.16 11.6 0.1 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 NTPase S-layer PF07752.6 gi|386000765|ref|YP_005919064.1| - 1.3e-76 257.1 0.0 1.4e-37 129.2 0.2 2.2 2 0 0 2 2 2 2 S-layer protein VPEP PF07589.6 gi|386000765|ref|YP_005919064.1| - 0.04 13.8 5.2 0.1 12.4 3.6 1.8 1 0 0 1 1 1 0 PEP-CTERM motif Pro_dh PF01619.13 gi|386000766|ref|YP_005919065.1| - 2.7e-18 66.0 0.0 3.6e-16 59.0 0.0 2.4 1 1 0 1 1 1 1 Proline dehydrogenase Peripla_BP_2 PF01497.13 gi|386000767|ref|YP_005919066.1| - 0.065 12.3 0.0 0.078 12.0 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein DUF1175 PF06672.6 gi|386000768|ref|YP_005919067.1| - 0.055 12.8 0.0 0.083 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1175) Pribosyltran_N PF13793.1 gi|386000769|ref|YP_005919068.1| - 5.3e-20 71.2 0.0 1.9e-16 59.8 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|386000769|ref|YP_005919068.1| - 3.5e-18 65.5 0.2 6.7e-18 64.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|386000769|ref|YP_005919068.1| - 4.2e-09 36.4 2.2 6.6e-09 35.7 0.7 1.9 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|386000769|ref|YP_005919068.1| - 7.3e-07 28.5 0.1 1.1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|386000769|ref|YP_005919068.1| - 0.008 15.4 0.0 0.022 14.0 0.0 1.6 1 1 1 2 2 2 1 Phosphoribosyl transferase PmbA_TldD PF01523.11 gi|386000770|ref|YP_005919069.1| - 7.8e-64 215.7 0.9 9.8e-64 215.4 0.6 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PAC2 PF09754.4 gi|386000771|ref|YP_005919070.1| - 8.4e-55 186.0 0.1 1e-54 185.7 0.1 1.0 1 0 0 1 1 1 1 PAC2 family NAD_binding_10 PF13460.1 gi|386000771|ref|YP_005919070.1| - 0.05 13.5 0.0 0.21 11.5 0.0 2.1 2 1 0 2 2 2 0 NADH(P)-binding Nop10p PF04135.7 gi|386000772|ref|YP_005919071.1| - 4.9e-25 87.0 1.6 5.2e-25 86.9 1.1 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.10 gi|386000772|ref|YP_005919071.1| - 8.3e-07 28.3 0.9 1.1e-06 28.0 0.6 1.2 1 0 0 1 1 1 1 RecR protein Cript PF10235.4 gi|386000772|ref|YP_005919071.1| - 0.012 15.9 0.4 0.014 15.7 0.3 1.2 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT DZR PF12773.2 gi|386000772|ref|YP_005919071.1| - 0.042 13.6 1.4 0.063 13.0 0.9 1.4 1 1 0 1 1 1 0 Double zinc ribbon PolC_DP2 PF03833.8 gi|386000772|ref|YP_005919071.1| - 0.051 11.2 0.3 0.043 11.4 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF1272 PF06906.6 gi|386000772|ref|YP_005919071.1| - 0.054 13.3 0.8 0.067 13.0 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) UPF0547 PF10571.4 gi|386000772|ref|YP_005919071.1| - 0.085 12.5 2.3 6.7 6.5 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Sec23_Sec24 PF04810.10 gi|386000772|ref|YP_005919071.1| - 0.11 12.0 2.4 6.3 6.4 0.0 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-ribbon_3 PF13248.1 gi|386000772|ref|YP_005919071.1| - 0.6 9.3 3.2 0.64 9.2 0.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|386000772|ref|YP_005919071.1| - 1.4 8.8 3.7 3.7 7.5 0.1 2.2 1 1 1 2 2 2 0 Rubredoxin zf-tcix PF14952.1 gi|386000772|ref|YP_005919071.1| - 6.4 6.1 7.1 8.2 5.8 0.9 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding EIF_2_alpha PF07541.7 gi|386000773|ref|YP_005919072.1| - 2.7e-26 91.5 0.1 4.6e-26 90.7 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|386000773|ref|YP_005919072.1| - 7.7e-10 38.7 0.3 2.2e-09 37.2 0.1 1.8 2 0 0 2 2 2 1 S1 RNA binding domain Ribosomal_S27e PF01667.12 gi|386000774|ref|YP_005919073.1| - 3.6e-23 80.8 1.6 3.8e-23 80.7 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 C1_1 PF00130.17 gi|386000774|ref|YP_005919073.1| - 0.025 14.3 0.7 0.034 13.8 0.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RanBP PF00641.13 gi|386000774|ref|YP_005919073.1| - 0.028 13.5 1.9 1.2 8.2 0.0 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Sgf11 PF08209.6 gi|386000774|ref|YP_005919073.1| - 0.047 13.0 2.4 0.33 10.3 0.0 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF2180 PF09947.4 gi|386000774|ref|YP_005919073.1| - 0.059 13.1 1.2 0.07 12.8 0.8 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) DUF4206 PF13901.1 gi|386000774|ref|YP_005919073.1| - 0.12 11.9 0.2 0.12 11.9 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) HypA PF01155.14 gi|386000774|ref|YP_005919073.1| - 0.12 12.0 0.6 0.13 11.9 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-BED PF02892.10 gi|386000774|ref|YP_005919073.1| - 0.14 11.9 2.0 1.1 9.0 0.0 2.0 1 1 1 2 2 2 0 BED zinc finger ZZ PF00569.12 gi|386000774|ref|YP_005919073.1| - 0.37 10.3 3.8 1.1 8.8 2.7 1.7 1 1 0 1 1 1 0 Zinc finger, ZZ type zinc_ribbon_6 PF14599.1 gi|386000774|ref|YP_005919073.1| - 0.45 10.3 3.7 0.88 9.4 2.6 1.5 1 1 0 1 1 1 0 Zinc-ribbon zinc_ribbon_4 PF13717.1 gi|386000774|ref|YP_005919073.1| - 0.99 9.1 4.7 26 4.6 3.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF3797 PF12677.2 gi|386000774|ref|YP_005919073.1| - 1.3 8.6 5.9 0.44 10.2 1.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TFIIS_C PF01096.13 gi|386000774|ref|YP_005919073.1| - 1.3 8.6 4.7 7.2 6.3 0.3 2.3 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|386000774|ref|YP_005919073.1| - 1.7 8.2 4.9 43 3.7 3.4 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-trcl PF13451.1 gi|386000774|ref|YP_005919073.1| - 1.8 8.2 4.1 1.3 8.7 0.4 2.0 1 1 1 2 2 2 0 Probable zinc-binding domain Ribosomal_L44 PF00935.14 gi|386000775|ref|YP_005919074.1| - 1e-26 92.7 4.3 1e-26 92.7 3.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L44 zf-Di19 PF05605.7 gi|386000775|ref|YP_005919074.1| - 0.048 13.7 1.2 1.1 9.4 0.1 2.3 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Elf1 PF05129.8 gi|386000775|ref|YP_005919074.1| - 0.074 12.7 2.2 0.82 9.4 0.1 2.2 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-met PF12874.2 gi|386000775|ref|YP_005919074.1| - 0.11 12.7 2.4 2.8 8.2 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger of C2H2 type Zn_Tnp_IS1 PF03811.8 gi|386000775|ref|YP_005919074.1| - 0.11 12.0 9.5 1.6 8.3 0.7 2.5 2 1 0 2 2 2 0 InsA N-terminal domain zf-Sec23_Sec24 PF04810.10 gi|386000775|ref|YP_005919074.1| - 0.11 12.0 0.8 15 5.2 0.0 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DUF581 PF04570.9 gi|386000775|ref|YP_005919074.1| - 0.17 11.1 1.4 11 5.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF581) zf-H2C2_2 PF13465.1 gi|386000775|ref|YP_005919074.1| - 0.26 11.6 10.0 6.4 7.2 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger double domain zf-C4_ClpX PF06689.8 gi|386000775|ref|YP_005919074.1| - 0.37 10.3 3.4 5.7 6.5 0.2 2.2 2 0 0 2 2 2 0 ClpX C4-type zinc finger Zn-ribbon_8 PF09723.5 gi|386000775|ref|YP_005919074.1| - 0.75 9.7 3.3 3.9 7.5 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Sld5 PF05916.6 gi|386000776|ref|YP_005919075.1| - 0.094 13.0 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 GINS complex protein DNA_primase_S PF01896.14 gi|386000777|ref|YP_005919076.1| - 7.5e-20 71.2 0.0 1.6e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit CN_hydrolase PF00795.17 gi|386000778|ref|YP_005919077.1| - 3.7e-18 65.5 0.0 7.7e-18 64.4 0.0 1.5 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase zf-ribbon_3 PF13248.1 gi|386000779|ref|YP_005919078.1| - 6.2e-06 25.2 0.2 0.017 14.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|386000779|ref|YP_005919078.1| - 9.8e-05 21.7 0.6 0.022 14.2 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|386000779|ref|YP_005919078.1| - 0.00047 19.6 1.2 0.53 9.8 0.1 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|386000779|ref|YP_005919078.1| - 0.00053 19.2 0.4 0.33 10.3 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding ADK_lid PF05191.9 gi|386000779|ref|YP_005919078.1| - 0.0031 17.1 0.7 0.61 9.7 0.1 2.3 2 0 0 2 2 2 1 Adenylate kinase, active site lid DZR PF12773.2 gi|386000779|ref|YP_005919078.1| - 0.0034 17.1 0.1 0.0088 15.8 0.1 1.6 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|386000779|ref|YP_005919078.1| - 0.0058 16.1 0.2 0.073 12.6 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|386000779|ref|YP_005919078.1| - 0.0059 16.3 1.1 0.32 10.8 0.0 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.1 gi|386000779|ref|YP_005919078.1| - 0.0067 16.0 0.4 0.064 12.9 0.0 2.3 3 0 0 3 3 2 1 zinc-ribbon domain Elf1 PF05129.8 gi|386000779|ref|YP_005919078.1| - 0.014 15.0 0.0 0.017 14.8 0.0 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.5 gi|386000779|ref|YP_005919078.1| - 0.035 14.0 1.1 1.3 9.0 0.5 2.1 1 1 1 2 2 2 0 Zinc ribbon domain GATA PF00320.22 gi|386000779|ref|YP_005919078.1| - 0.043 13.1 0.2 2.7 7.4 0.0 2.2 2 0 0 2 2 2 0 GATA zinc finger Prok-RING_1 PF14446.1 gi|386000779|ref|YP_005919078.1| - 0.051 13.3 0.3 0.83 9.4 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|386000779|ref|YP_005919078.1| - 0.062 13.1 3.7 3 7.7 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1272 PF06906.6 gi|386000779|ref|YP_005919078.1| - 0.076 12.8 0.3 0.16 11.8 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-CSL PF05207.8 gi|386000779|ref|YP_005919078.1| - 0.076 12.5 0.2 0.094 12.2 0.1 1.2 1 0 0 1 1 1 0 CSL zinc finger zf-HYPF PF07503.7 gi|386000779|ref|YP_005919078.1| - 0.083 12.3 1.0 1.3 8.5 0.2 2.3 2 0 0 2 2 2 0 HypF finger UPF1_Zn_bind PF09416.5 gi|386000779|ref|YP_005919078.1| - 0.095 12.2 0.0 0.097 12.2 0.0 1.0 1 0 0 1 1 1 0 RNA helicase (UPF2 interacting domain) UPF0547 PF10571.4 gi|386000779|ref|YP_005919078.1| - 0.097 12.3 4.6 3.3 7.4 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RNA_POL_M_15KD PF02150.11 gi|386000779|ref|YP_005919078.1| - 0.12 12.0 0.5 3 7.6 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.1 gi|386000779|ref|YP_005919078.1| - 0.12 12.0 0.7 14 5.4 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.1 gi|386000779|ref|YP_005919078.1| - 0.13 11.7 0.5 0.66 9.4 0.3 1.9 1 1 0 1 1 1 0 Transposase zinc-binding domain Rubredoxin PF00301.15 gi|386000779|ref|YP_005919078.1| - 0.13 12.1 1.0 3.8 7.4 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Ribosomal_L32p PF01783.18 gi|386000779|ref|YP_005919078.1| - 0.13 12.4 0.8 5.5 7.2 0.1 2.2 2 0 0 2 2 2 0 Ribosomal L32p protein family TFIIS_C PF01096.13 gi|386000779|ref|YP_005919078.1| - 0.14 11.8 0.5 11 5.7 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-tcix PF14952.1 gi|386000779|ref|YP_005919078.1| - 0.14 11.4 0.4 4 6.8 0.0 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Lar_restr_allev PF14354.1 gi|386000779|ref|YP_005919078.1| - 0.15 12.3 1.4 0.51 10.6 0.9 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-RING_4 PF14570.1 gi|386000779|ref|YP_005919078.1| - 0.19 11.3 2.9 1.1 8.9 2.0 1.9 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain DNA_RNApol_7kD PF03604.8 gi|386000779|ref|YP_005919078.1| - 0.26 10.7 1.8 2.5 7.6 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.5 gi|386000779|ref|YP_005919078.1| - 0.27 10.7 1.1 5.2 6.6 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-HIT PF04438.11 gi|386000779|ref|YP_005919078.1| - 0.28 10.8 3.3 1.7 8.3 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger ZF-HD_dimer PF04770.7 gi|386000779|ref|YP_005919078.1| - 0.56 10.3 3.1 0.2 11.7 0.5 1.5 1 1 1 2 2 2 0 ZF-HD protein dimerisation region DUF1610 PF07754.6 gi|386000779|ref|YP_005919078.1| - 3.7 7.7 6.4 0.95 9.6 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) PUA PF01472.15 gi|386000780|ref|YP_005919079.1| - 3.9e-08 32.9 0.7 4.2e-08 32.7 0.5 1.0 1 0 0 1 1 1 1 PUA domain His_Phos_1 PF00300.17 gi|386000781|ref|YP_005919080.1| - 4.9e-40 137.1 0.0 6e-40 136.9 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) dUTPase PF00692.14 gi|386000782|ref|YP_005919081.1| - 9.9e-09 34.7 0.0 1.6e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|386000782|ref|YP_005919081.1| - 9.6e-05 20.9 0.0 0.027 12.8 0.0 1.7 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF1614 PF07758.6 gi|386000783|ref|YP_005919082.1| - 1.5e-38 132.2 18.3 1.5e-38 132.2 12.7 2.0 2 1 0 2 2 2 1 Protein of unknown function (DUF1614) BofA PF07441.6 gi|386000784|ref|YP_005919083.1| - 2.5e-06 27.3 15.4 3.3e-06 26.9 10.7 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA DUF835 PF05763.7 gi|386000785|ref|YP_005919084.1| - 3.2e-35 120.6 0.0 1.5e-20 73.1 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF835) tRNA-synt_2 PF00152.15 gi|386000786|ref|YP_005919085.1| - 5.3e-89 298.2 0.0 6.7e-89 297.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|386000786|ref|YP_005919085.1| - 1.1e-10 41.2 0.0 2e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|386000786|ref|YP_005919085.1| - 0.0046 16.1 1.2 1.4 8.1 0.1 3.0 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) DUF333 PF03891.10 gi|386000787|ref|YP_005919086.1| - 5.6e-20 70.8 0.3 1e-19 70.0 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF333) DUF3617 PF12276.3 gi|386000788|ref|YP_005919087.1| - 0.021 14.2 0.2 0.029 13.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3617) DIM PF08194.7 gi|386000788|ref|YP_005919087.1| - 0.1 12.5 0.4 0.2 11.6 0.3 1.5 1 0 0 1 1 1 0 DIM protein Zn_Tnp_IS1595 PF12760.2 gi|386000789|ref|YP_005919088.1| - 0.00021 20.9 0.8 0.0003 20.5 0.5 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|386000789|ref|YP_005919088.1| - 0.00022 21.4 0.4 0.00027 21.1 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|386000789|ref|YP_005919088.1| - 0.0093 15.9 0.9 1.6 8.7 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain CRISPR_assoc PF08798.6 gi|386000789|ref|YP_005919088.1| - 0.023 14.4 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 CRISPR associated protein A2L_zn_ribbon PF08792.5 gi|386000789|ref|YP_005919088.1| - 0.027 13.9 3.2 1.9 8.0 0.0 2.4 2 1 0 2 2 2 0 A2L zinc ribbon domain TFIIS_C PF01096.13 gi|386000789|ref|YP_005919088.1| - 0.042 13.4 1.6 1.6 8.4 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) PhnJ PF06007.6 gi|386000789|ref|YP_005919088.1| - 0.074 11.8 0.1 0.081 11.6 0.1 1.1 1 0 0 1 1 1 0 Phosphonate metabolism protein PhnJ C1_3 PF07649.7 gi|386000789|ref|YP_005919088.1| - 0.095 12.7 0.4 0.095 12.7 0.3 1.9 2 0 0 2 2 2 0 C1-like domain C1_2 PF03107.11 gi|386000789|ref|YP_005919088.1| - 0.099 12.7 0.5 0.099 12.7 0.3 1.9 2 0 0 2 2 2 0 C1 domain Elf1 PF05129.8 gi|386000789|ref|YP_005919088.1| - 0.12 12.0 0.5 1.8 8.3 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|386000789|ref|YP_005919088.1| - 0.13 11.9 0.2 0.21 11.2 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|386000789|ref|YP_005919088.1| - 0.16 11.3 0.1 0.16 11.3 0.1 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|386000789|ref|YP_005919088.1| - 0.18 11.6 1.8 9.9 6.1 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin FdhE PF04216.7 gi|386000789|ref|YP_005919088.1| - 0.52 9.9 2.5 0.75 9.4 1.6 1.4 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation Prim_Zn_Ribbon PF08273.7 gi|386000789|ref|YP_005919088.1| - 0.57 10.3 2.6 1.2 9.2 1.8 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Peripla_BP_6 PF13458.1 gi|386000790|ref|YP_005919089.1| - 2.1e-27 96.3 2.3 3.7e-27 95.5 1.6 1.3 1 1 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|386000790|ref|YP_005919089.1| - 6.3e-26 90.9 0.6 8.2e-26 90.6 0.4 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.8 gi|386000790|ref|YP_005919089.1| - 8.8e-09 34.4 0.1 1.2e-08 34.0 0.1 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.1 gi|386000790|ref|YP_005919089.1| - 0.00018 20.3 0.0 0.00029 19.7 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_4 PF13407.1 gi|386000790|ref|YP_005919089.1| - 0.0046 16.3 0.2 0.0075 15.6 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain MFS_1 PF07690.11 gi|386000791|ref|YP_005919090.1| - 1.7e-55 188.2 52.1 1.7e-55 188.2 36.1 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|386000791|ref|YP_005919090.1| - 0.00042 18.8 41.1 0.0038 15.6 16.5 2.7 1 1 0 2 2 2 2 MFS/sugar transport protein DUF2611 PF11022.3 gi|386000791|ref|YP_005919090.1| - 1.4 9.0 3.3 2.5 8.2 0.0 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF2611) FMN_red PF03358.10 gi|386000792|ref|YP_005919091.1| - 1.5e-31 108.9 0.0 1.8e-31 108.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|386000792|ref|YP_005919091.1| - 3.1e-09 36.6 0.0 4e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold TetR_N PF00440.18 gi|386000792|ref|YP_005919091.1| - 0.052 13.1 0.2 0.38 10.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Flavoprotein PF02441.14 gi|386000793|ref|YP_005919092.1| - 7.9e-18 64.3 0.0 1.1e-17 63.9 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein TrmB PF01978.14 gi|386000794|ref|YP_005919093.1| - 0.0049 16.5 0.0 0.0071 16.0 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|386000794|ref|YP_005919093.1| - 0.039 13.9 0.0 0.084 12.9 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|386000794|ref|YP_005919093.1| - 0.085 13.1 0.2 0.19 12.0 0.1 1.7 1 1 1 2 2 2 0 Winged helix DNA-binding domain tRNA_SAD PF07973.9 gi|386000795|ref|YP_005919094.1| - 1.6e-13 50.3 0.4 3e-13 49.4 0.3 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|386000795|ref|YP_005919094.1| - 4.8e-11 41.6 0.0 6.7e-11 41.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) RVT_3 PF13456.1 gi|386000795|ref|YP_005919094.1| - 0.02 14.6 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 Reverse transcriptase-like DUF2099 PF09872.4 gi|386000796|ref|YP_005919095.1| - 1.6e-105 351.7 0.3 2e-105 351.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Nop PF01798.13 gi|386000799|ref|YP_005919098.1| - 3.7e-42 143.1 0.7 5.3e-42 142.6 0.5 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|386000799|ref|YP_005919098.1| - 0.017 14.9 0.2 0.029 14.1 0.1 1.4 1 0 0 1 1 1 0 NOSIC (NUC001) domain tRNA_anti-codon PF01336.20 gi|386000800|ref|YP_005919099.1| - 9e-07 28.6 0.3 0.5 10.2 0.0 3.6 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain PsbL PF02419.12 gi|386000800|ref|YP_005919099.1| - 0.041 13.3 0.6 50 3.4 0.0 3.3 3 0 0 3 3 3 0 PsbL protein AsnC_trans_reg PF01037.16 gi|386000802|ref|YP_005919101.1| - 1.7e-12 46.8 0.6 1.9e-12 46.7 0.4 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|386000802|ref|YP_005919101.1| - 0.00043 19.9 0.1 0.00046 19.8 0.1 1.1 1 0 0 1 1 1 1 GYD domain NapD PF03927.8 gi|386000802|ref|YP_005919101.1| - 0.00076 19.2 0.9 0.00096 18.9 0.6 1.1 1 0 0 1 1 1 1 NapD protein ACT_4 PF13291.1 gi|386000802|ref|YP_005919101.1| - 0.0023 18.2 0.1 0.18 12.1 0.1 2.1 2 0 0 2 2 2 1 ACT domain Spt5-NGN PF03439.8 gi|386000802|ref|YP_005919101.1| - 0.079 12.7 0.2 0.2 11.4 0.1 1.6 1 1 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section AlkA_N PF06029.6 gi|386000802|ref|YP_005919101.1| - 0.11 12.5 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 AlkA N-terminal domain Chlor_dismutase PF06778.7 gi|386000802|ref|YP_005919101.1| - 0.12 12.0 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Chlorite dismutase Topo-VIb_trans PF09239.6 gi|386000803|ref|YP_005919102.1| - 9.1e-66 220.3 0.0 1.6e-65 219.5 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|386000803|ref|YP_005919102.1| - 2.2e-11 43.4 0.0 4.2e-11 42.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|386000803|ref|YP_005919102.1| - 1.1e-07 31.5 0.0 2e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|386000803|ref|YP_005919102.1| - 1.3e-05 23.9 0.2 6.8e-05 21.5 0.0 1.9 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) H2TH PF06831.9 gi|386000803|ref|YP_005919102.1| - 0.053 13.2 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Formamidopyrimidine-DNA glycosylase H2TH domain TP6A_N PF04406.9 gi|386000804|ref|YP_005919103.1| - 3.4e-21 74.6 0.1 6.4e-21 73.7 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Amidohydro_2 PF04909.9 gi|386000805|ref|YP_005919104.1| - 2.9e-37 128.7 1.5 3.4e-37 128.4 1.0 1.1 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|386000805|ref|YP_005919104.1| - 0.0094 15.1 0.0 0.04 13.1 0.0 2.2 1 1 0 1 1 1 1 TatD related DNase Trm112p PF03966.11 gi|386000806|ref|YP_005919105.1| - 1e-12 48.2 0.6 1.6e-12 47.5 0.4 1.3 1 1 0 1 1 1 1 Trm112p-like protein Lar_restr_allev PF14354.1 gi|386000806|ref|YP_005919105.1| - 0.0016 18.6 0.1 0.0021 18.3 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Prim_Zn_Ribbon PF08273.7 gi|386000806|ref|YP_005919105.1| - 0.0091 16.0 0.2 0.011 15.7 0.1 1.1 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase zf-dskA_traR PF01258.12 gi|386000806|ref|YP_005919105.1| - 0.029 14.0 2.8 0.06 13.1 0.3 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Rubredoxin PF00301.15 gi|386000806|ref|YP_005919105.1| - 0.038 13.8 0.1 4.2 7.3 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|386000806|ref|YP_005919105.1| - 0.048 13.4 0.0 0.062 13.1 0.0 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain ADK_lid PF05191.9 gi|386000806|ref|YP_005919105.1| - 0.11 12.2 0.6 0.38 10.4 0.0 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.7 gi|386000806|ref|YP_005919105.1| - 0.22 10.8 3.6 1.6 8.1 2.5 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding CTP_synth_N PF06418.9 gi|386000807|ref|YP_005919106.1| - 3.9e-117 390.2 0.2 5.4e-117 389.7 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|386000807|ref|YP_005919106.1| - 1.3e-48 165.0 0.0 4.1e-48 163.3 0.0 1.9 3 0 0 3 3 3 1 Glutamine amidotransferase class-I CbiA PF01656.18 gi|386000807|ref|YP_005919106.1| - 3.8e-09 36.2 0.0 5.9e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.8 gi|386000807|ref|YP_005919106.1| - 7.8e-08 32.0 0.0 5.8e-06 25.9 0.0 2.7 1 1 0 1 1 1 1 Peptidase C26 DDE_Tnp_IS66 PF03050.9 gi|386000808|ref|YP_005919107.1| - 3.9e-55 186.9 0.0 3.9e-55 186.9 0.0 1.7 2 0 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.2 gi|386000808|ref|YP_005919107.1| - 5.5e-07 29.4 2.4 1.4e-06 28.1 1.7 1.7 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.1 gi|386000808|ref|YP_005919107.1| - 0.00081 19.3 0.0 0.0026 17.7 0.0 1.9 1 0 0 1 1 1 1 DDE domain DZR PF12773.2 gi|386000808|ref|YP_005919107.1| - 0.0082 15.9 0.1 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 Double zinc ribbon Transposase_mut PF00872.13 gi|386000808|ref|YP_005919107.1| - 0.0091 14.5 0.0 2.1 6.8 0.0 2.4 2 0 0 2 2 2 2 Transposase, Mutator family zf-ribbon_3 PF13248.1 gi|386000808|ref|YP_005919107.1| - 0.027 13.6 1.8 3.2 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|386000808|ref|YP_005919107.1| - 0.031 13.9 1.2 6.7 6.4 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|386000808|ref|YP_005919107.1| - 0.083 12.5 1.0 0.45 10.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|386000808|ref|YP_005919107.1| - 0.1 11.7 0.6 12 5.2 0.1 2.6 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.1 gi|386000808|ref|YP_005919107.1| - 0.11 12.0 1.1 0.71 9.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF972 PF06156.8 gi|386000808|ref|YP_005919107.1| - 0.14 12.4 3.6 0.54 10.6 1.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF972) zinc_ribbon_2 PF13240.1 gi|386000808|ref|YP_005919107.1| - 0.17 11.4 1.0 6.9 6.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TMF_DNA_bd PF12329.3 gi|386000808|ref|YP_005919107.1| - 0.18 11.6 6.7 0.14 12.0 2.7 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DNA_ligase_ZBD PF03119.11 gi|386000808|ref|YP_005919107.1| - 0.18 11.5 2.6 8.8 6.1 0.2 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DivIC PF04977.10 gi|386000808|ref|YP_005919107.1| - 0.19 11.2 3.9 0.6 9.6 2.7 1.8 1 0 0 1 1 1 0 Septum formation initiator DivIVA PF05103.8 gi|386000808|ref|YP_005919107.1| - 0.25 11.4 3.1 0.28 11.2 0.8 2.0 2 0 0 2 2 2 0 DivIVA protein DUF737 PF05300.6 gi|386000808|ref|YP_005919107.1| - 0.42 10.5 5.0 0.73 9.7 3.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF737) DUF904 PF06005.7 gi|386000808|ref|YP_005919107.1| - 1.1 9.5 8.3 0.31 11.3 1.6 2.8 3 1 0 3 3 2 0 Protein of unknown function (DUF904) Cep57_CLD_2 PF14197.1 gi|386000808|ref|YP_005919107.1| - 5.8 6.9 9.6 2.3 8.1 1.3 3.0 3 0 0 3 3 3 0 Centrosome localisation domain of PPC89 DUF4065 PF13274.1 gi|386000810|ref|YP_005919109.1| - 1.2e-11 45.2 0.7 1.6e-11 44.8 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4065) AAA_21 PF13304.1 gi|386000811|ref|YP_005919110.1| - 1.2e-28 100.8 0.0 1.1e-27 97.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|386000811|ref|YP_005919110.1| - 1.1e-10 41.2 0.0 3.5e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|386000811|ref|YP_005919110.1| - 1.2e-09 38.8 0.0 1.6e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|386000811|ref|YP_005919110.1| - 5.1e-07 29.1 0.0 1.1e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|386000811|ref|YP_005919110.1| - 2.1e-05 23.9 0.0 4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|386000811|ref|YP_005919110.1| - 0.0018 18.6 0.0 0.0034 17.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter DUF2813 PF11398.3 gi|386000811|ref|YP_005919110.1| - 0.057 12.4 0.1 3.1 6.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) AAA_13 PF13166.1 gi|386000811|ref|YP_005919110.1| - 0.12 10.7 0.0 0.55 8.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF4276 PF14103.1 gi|386000812|ref|YP_005919111.1| - 2e-47 161.6 0.0 2.2e-47 161.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4276) YbjM PF11045.3 gi|386000813|ref|YP_005919112.1| - 0.047 13.4 0.5 0.049 13.4 0.3 1.0 1 0 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae ATP_synt_I PF03899.10 gi|386000813|ref|YP_005919112.1| - 9.8 6.4 8.3 57 3.9 5.8 1.8 1 1 0 1 1 1 0 ATP synthase I chain PhzC-PhzF PF02567.11 gi|386000814|ref|YP_005919113.1| - 4.5e-69 232.7 0.0 6.3e-69 232.2 0.0 1.2 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Acetyltransf_1 PF00583.19 gi|386000815|ref|YP_005919114.1| - 9.5e-12 44.7 0.3 1.5e-11 44.1 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|386000815|ref|YP_005919114.1| - 3.1e-11 43.4 0.1 4.5e-11 42.9 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|386000815|ref|YP_005919114.1| - 9.5e-08 32.1 0.0 1.3e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|386000815|ref|YP_005919114.1| - 0.00024 20.9 0.0 0.00069 19.4 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386000815|ref|YP_005919114.1| - 0.017 14.8 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_3 PF13302.1 gi|386000815|ref|YP_005919114.1| - 0.025 14.7 0.0 0.044 13.9 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|386000815|ref|YP_005919114.1| - 0.059 13.2 0.0 0.095 12.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AroM PF07302.6 gi|386000816|ref|YP_005919115.1| - 0.017 14.4 0.0 0.02 14.2 0.0 1.1 1 0 0 1 1 1 0 AroM protein E1-E2_ATPase PF00122.15 gi|386000818|ref|YP_005919117.1| - 3.1e-51 173.6 1.5 5.9e-51 172.7 1.0 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|386000818|ref|YP_005919117.1| - 3.6e-47 161.5 2.0 8.1e-47 160.4 0.5 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|386000818|ref|YP_005919117.1| - 1.9e-17 64.0 0.0 4.9e-17 62.7 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|386000818|ref|YP_005919117.1| - 1e-06 28.5 0.0 0.0014 18.2 0.1 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|386000818|ref|YP_005919117.1| - 0.17 12.1 0.0 0.56 10.4 0.0 1.8 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF262 PF03235.9 gi|386000819|ref|YP_005919118.1| - 8.1e-34 117.5 0.6 8.1e-34 117.5 0.4 2.4 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|386000819|ref|YP_005919118.1| - 6.1e-28 97.4 2.4 8.2e-28 97.0 0.2 2.3 3 0 0 3 3 3 1 Protein of unknown function (DUF1524) GntP_permease PF02447.11 gi|386000822|ref|YP_005919121.1| - 2e-28 99.0 22.2 1.2e-16 60.2 0.7 2.0 2 0 0 2 2 2 2 GntP family permease DUF11 PF01345.13 gi|386000823|ref|YP_005919122.1| - 3.1e-24 84.8 3.0 8.1e-05 22.5 0.0 7.6 8 0 0 8 8 8 6 Domain of unknown function DUF11 CARDB PF07705.6 gi|386000823|ref|YP_005919122.1| - 2.4e-17 62.8 0.0 0.00085 19.3 0.0 8.2 8 1 0 8 8 8 4 CARDB NPCBM_assoc PF10633.4 gi|386000823|ref|YP_005919122.1| - 3.7e-10 39.7 4.0 0.00048 20.1 0.5 7.0 8 0 0 8 8 8 2 NPCBM-associated, NEW3 domain of alpha-galactosidase A2M_N_2 PF07703.9 gi|386000823|ref|YP_005919122.1| - 7.7e-08 32.2 0.0 0.0096 15.7 0.0 4.4 4 0 0 4 4 4 2 Alpha-2-macroglobulin family N-terminal region Transglut_C PF00927.17 gi|386000823|ref|YP_005919122.1| - 0.00015 21.7 0.0 4.2 7.4 0.0 4.8 5 0 0 5 5 5 2 Transglutaminase family, C-terminal ig like domain TRAP_beta PF05753.9 gi|386000823|ref|YP_005919122.1| - 0.00032 19.8 0.1 20 4.2 0.0 5.3 6 0 0 6 6 6 0 Translocon-associated protein beta (TRAPB) A2M PF00207.17 gi|386000823|ref|YP_005919122.1| - 0.0048 16.4 0.0 2.8 7.5 0.0 3.9 4 0 0 4 4 4 1 Alpha-2-macroglobulin family DUF1573 PF07610.6 gi|386000823|ref|YP_005919122.1| - 0.013 15.0 0.6 4.6 6.9 0.0 5.0 5 1 1 6 6 6 0 Protein of unknown function (DUF1573) BAR PF03114.13 gi|386000825|ref|YP_005919124.1| - 0.023 14.2 0.6 0.023 14.1 0.4 1.1 1 0 0 1 1 1 0 BAR domain DUF972 PF06156.8 gi|386000825|ref|YP_005919124.1| - 0.075 13.3 4.3 0.13 12.6 2.4 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF972) SlyX PF04102.7 gi|386000825|ref|YP_005919124.1| - 0.11 12.9 1.7 0.17 12.3 0.7 1.7 1 1 0 1 1 1 0 SlyX DUF1825 PF08855.5 gi|386000825|ref|YP_005919124.1| - 0.11 12.4 0.7 0.16 11.9 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1825) V_ATPase_I PF01496.14 gi|386000825|ref|YP_005919124.1| - 0.14 9.9 1.9 0.16 9.8 1.3 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2732 PF10809.3 gi|386000825|ref|YP_005919124.1| - 0.16 11.5 5.6 0.37 10.3 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2732) GvpG PF05120.7 gi|386000825|ref|YP_005919124.1| - 2 8.2 5.6 13 5.7 1.2 2.3 2 0 0 2 2 2 0 Gas vesicle protein G Synaptobrevin PF00957.16 gi|386000825|ref|YP_005919124.1| - 2.6 7.6 4.1 6 6.5 0.8 2.4 1 1 2 3 3 3 0 Synaptobrevin SNO PF01174.14 gi|386000826|ref|YP_005919125.1| - 8.7e-41 139.6 0.0 9.9e-41 139.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|386000826|ref|YP_005919125.1| - 1.2e-09 37.9 0.0 1.3e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|386000826|ref|YP_005919125.1| - 0.00023 20.9 0.0 0.00031 20.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|386000826|ref|YP_005919125.1| - 0.0028 17.1 0.1 0.012 15.0 0.1 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|386000826|ref|YP_005919125.1| - 0.0062 16.0 0.1 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.8 gi|386000826|ref|YP_005919125.1| - 0.19 11.1 1.1 9.7 5.5 0.2 2.9 2 1 0 2 2 2 0 Peptidase C26 SOR_SNZ PF01680.12 gi|386000827|ref|YP_005919126.1| - 1.6e-94 315.3 8.3 2.1e-94 314.9 5.8 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|386000827|ref|YP_005919126.1| - 1.1e-08 34.5 9.9 8.2e-08 31.6 0.2 2.5 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|386000827|ref|YP_005919126.1| - 2.1e-06 26.8 0.2 0.0023 16.8 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.9 gi|386000827|ref|YP_005919126.1| - 0.00052 19.0 2.6 0.012 14.5 0.0 2.8 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|386000827|ref|YP_005919126.1| - 0.003 16.6 0.0 0.0062 15.6 0.0 1.6 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|386000827|ref|YP_005919126.1| - 0.004 16.3 0.1 0.004 16.3 0.1 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase DUF561 PF04481.7 gi|386000827|ref|YP_005919126.1| - 0.0058 15.6 0.3 0.15 10.9 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF561) PcrB PF01884.12 gi|386000827|ref|YP_005919126.1| - 0.01 15.0 0.6 0.031 13.5 0.0 1.9 2 1 0 2 2 2 0 PcrB family His_biosynth PF00977.16 gi|386000827|ref|YP_005919126.1| - 0.023 13.9 0.2 0.23 10.7 0.0 2.2 2 0 0 2 2 2 0 Histidine biosynthesis protein TMP-TENI PF02581.12 gi|386000827|ref|YP_005919126.1| - 0.45 9.5 3.8 3 6.9 0.1 2.7 2 1 1 3 3 3 0 Thiamine monophosphate synthase/TENI PD40 PF07676.7 gi|386000828|ref|YP_005919127.1| - 5.5e-12 45.0 52.4 0.9 9.2 0.1 17.5 20 0 0 20 20 20 5 WD40-like Beta Propeller Repeat Pectate_lyase22 PF14583.1 gi|386000828|ref|YP_005919127.1| - 2e-09 36.4 0.5 0.0082 14.6 0.0 5.3 5 1 1 6 6 6 3 Oligogalacturonate lyase DPPIV_N PF00930.16 gi|386000828|ref|YP_005919127.1| - 3.2e-07 29.2 10.3 0.61 8.6 0.0 7.6 5 2 3 8 8 8 5 Dipeptidyl peptidase IV (DPP IV) N-terminal region DUF295 PF03478.13 gi|386000828|ref|YP_005919127.1| - 0.00033 19.9 15.6 18 4.7 0.0 9.8 10 1 0 10 10 10 1 Protein of unknown function (DUF295) Kelch_4 PF13418.1 gi|386000828|ref|YP_005919127.1| - 0.0011 18.6 4.0 39 4.1 0.0 7.9 12 0 0 12 12 12 0 Galactose oxidase, central domain Lactonase PF10282.4 gi|386000828|ref|YP_005919127.1| - 0.26 10.3 0.4 17 4.3 0.0 3.8 6 0 0 6 6 6 0 Lactonase, 7-bladed beta-propeller MMR_HSR1 PF01926.18 gi|386000829|ref|YP_005919128.1| - 5.9e-20 71.3 0.0 1.6e-19 70.0 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|386000829|ref|YP_005919128.1| - 6.3e-17 61.1 0.0 1.8e-16 59.7 0.0 1.8 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|386000829|ref|YP_005919128.1| - 1.8e-14 53.3 0.0 6.9e-14 51.4 0.0 1.9 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|386000829|ref|YP_005919128.1| - 4.8e-05 23.2 0.1 0.1 12.4 0.1 2.6 1 1 1 2 2 2 2 Dynamin family DUF258 PF03193.11 gi|386000829|ref|YP_005919128.1| - 0.0041 16.3 0.1 0.015 14.4 0.1 2.0 2 1 0 2 2 2 1 Protein of unknown function, DUF258 AIG1 PF04548.11 gi|386000829|ref|YP_005919128.1| - 0.0083 15.2 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.22 gi|386000829|ref|YP_005919128.1| - 0.018 14.5 0.2 1.1 8.7 0.0 2.9 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain ABC_tran PF00005.22 gi|386000829|ref|YP_005919128.1| - 0.031 14.5 0.9 0.063 13.5 0.0 1.9 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.1 gi|386000829|ref|YP_005919128.1| - 0.044 13.7 0.0 0.099 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain SRPRB PF09439.5 gi|386000829|ref|YP_005919128.1| - 0.068 12.3 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|386000829|ref|YP_005919128.1| - 0.07 13.6 0.0 0.17 12.3 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein MCM PF00493.18 gi|386000829|ref|YP_005919128.1| - 0.071 11.8 0.0 0.11 11.2 0.0 1.3 1 0 0 1 1 1 0 MCM2/3/5 family DUF1940 PF09155.5 gi|386000829|ref|YP_005919128.1| - 0.072 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1940) DUF3782 PF12644.2 gi|386000829|ref|YP_005919128.1| - 0.3 10.8 3.0 0.91 9.3 1.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) Ribosomal_S8e PF01201.17 gi|386000830|ref|YP_005919129.1| - 1.2e-35 122.4 3.5 1.4e-35 122.2 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF1922 PF09082.5 gi|386000831|ref|YP_005919130.1| - 1.4e-18 66.7 0.1 1.5e-18 66.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) zf-CSL PF05207.8 gi|386000831|ref|YP_005919130.1| - 0.066 12.7 2.0 0.11 12.0 0.0 2.0 1 1 1 2 2 2 0 CSL zinc finger Radical_SAM PF04055.16 gi|386000833|ref|YP_005919132.1| - 9.4e-16 58.4 0.0 2.1e-15 57.2 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|386000833|ref|YP_005919132.1| - 0.00012 22.3 0.0 0.00026 21.2 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain DUF2388 PF09498.5 gi|386000833|ref|YP_005919132.1| - 0.15 11.7 0.1 3.3 7.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2388) Orn_Arg_deC_N PF02784.11 gi|386000834|ref|YP_005919133.1| - 2.6e-59 200.4 0.0 3.7e-59 199.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|386000834|ref|YP_005919133.1| - 4.6e-24 84.3 0.0 7.9e-24 83.6 0.0 1.5 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|386000834|ref|YP_005919133.1| - 9.1e-13 48.2 0.2 1.7e-12 47.3 0.1 1.4 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain dCMP_cyt_deam_1 PF00383.17 gi|386000835|ref|YP_005919134.1| - 1.6e-28 98.3 1.6 2.1e-28 97.9 1.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region XOO_2897-deam PF14440.1 gi|386000835|ref|YP_005919134.1| - 0.00096 18.8 0.2 0.0021 17.7 0.1 1.3 1 1 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase Bd3614-deam PF14439.1 gi|386000835|ref|YP_005919134.1| - 0.002 17.9 0.2 0.0054 16.5 0.1 1.6 1 1 0 1 1 1 1 Bd3614-like deaminase APOBEC_N PF08210.6 gi|386000835|ref|YP_005919134.1| - 0.0025 17.4 1.1 0.0039 16.8 0.7 1.2 1 0 0 1 1 1 1 APOBEC-like N-terminal domain MafB19-deam PF14437.1 gi|386000835|ref|YP_005919134.1| - 0.013 15.0 1.4 0.02 14.5 0.9 1.2 1 0 0 1 1 1 0 MafB19-like deaminase zf-C3HC4 PF00097.20 gi|386000835|ref|YP_005919134.1| - 0.11 12.1 2.2 0.17 11.5 1.0 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) tRNA-synt_1f PF01921.13 gi|386000836|ref|YP_005919135.1| - 3.2e-130 433.9 0.0 4.3e-130 433.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|386000836|ref|YP_005919135.1| - 9.1e-07 27.8 0.0 0.0016 17.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|386000836|ref|YP_005919135.1| - 0.00044 19.4 0.0 0.28 10.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain zf-CDGSH PF09360.5 gi|386000836|ref|YP_005919135.1| - 0.043 13.6 0.0 0.091 12.6 0.0 1.5 1 0 0 1 1 1 0 Iron-binding zinc finger CDGSH type tRNA-synt_1b PF00579.20 gi|386000836|ref|YP_005919135.1| - 0.24 10.4 0.0 0.36 9.9 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) Nuc_deoxyrib_tr PF05014.10 gi|386000837|ref|YP_005919136.1| - 2.8e-18 65.8 0.0 3.8e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Metallophos_2 PF12850.2 gi|386000838|ref|YP_005919137.1| - 7.5e-05 22.6 0.0 9.7e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|386000838|ref|YP_005919137.1| - 0.00022 20.6 0.0 0.00035 20.0 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Epimerase_2 PF02350.14 gi|386000838|ref|YP_005919137.1| - 0.098 11.4 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Pribosyltran PF00156.22 gi|386000839|ref|YP_005919138.1| - 1.6e-11 44.0 0.2 2.4e-11 43.4 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|386000839|ref|YP_005919138.1| - 0.00026 20.2 0.0 0.00032 19.9 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|386000839|ref|YP_005919138.1| - 0.033 13.4 0.0 0.044 13.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase DsbC_N PF10411.4 gi|386000840|ref|YP_005919139.1| - 0.026 13.7 0.2 0.049 12.8 0.0 1.6 2 0 0 2 2 2 0 Disulfide bond isomerase protein N-terminus Alpha_adaptinC2 PF02883.15 gi|386000840|ref|YP_005919139.1| - 0.038 14.3 0.0 0.042 14.1 0.0 1.1 1 0 0 1 1 1 0 Adaptin C-terminal domain NPCBM_assoc PF10633.4 gi|386000840|ref|YP_005919139.1| - 0.065 13.2 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Met_10 PF02475.11 gi|386000843|ref|YP_005919142.1| - 6.4e-61 205.4 0.0 9.1e-61 204.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|386000843|ref|YP_005919142.1| - 2.1e-07 30.9 0.4 5.2e-07 29.6 0.2 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386000843|ref|YP_005919142.1| - 1.8e-05 25.2 0.0 7.2e-05 23.3 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain TRM PF02005.11 gi|386000843|ref|YP_005919142.1| - 6.5e-05 22.0 0.0 7.6e-05 21.7 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|386000843|ref|YP_005919142.1| - 0.00053 19.5 0.0 0.00071 19.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|386000843|ref|YP_005919142.1| - 0.0037 16.6 0.0 0.0065 15.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|386000843|ref|YP_005919142.1| - 0.02 14.4 0.0 0.031 13.8 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|386000843|ref|YP_005919142.1| - 0.025 13.9 0.0 0.038 13.3 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_21 PF05050.7 gi|386000843|ref|YP_005919142.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase FkbM domain PrmA PF06325.8 gi|386000843|ref|YP_005919142.1| - 0.16 11.0 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Lactamase_B_3 PF13483.1 gi|386000844|ref|YP_005919143.1| - 5.2e-17 62.0 0.1 6.6e-17 61.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|386000844|ref|YP_005919143.1| - 0.00059 19.4 0.0 0.00073 19.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF21 PF01595.15 gi|386000846|ref|YP_005919145.1| - 2e-47 160.8 3.0 2.7e-47 160.4 2.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|386000846|ref|YP_005919145.1| - 1.7e-22 78.9 3.2 2e-22 78.7 0.3 2.4 3 0 0 3 3 3 1 Transporter associated domain CBS PF00571.23 gi|386000846|ref|YP_005919145.1| - 5e-15 55.0 0.5 3.9e-06 26.5 0.0 3.1 3 0 0 3 3 3 2 CBS domain MVIN PF03023.9 gi|386000846|ref|YP_005919145.1| - 0.017 13.5 3.7 0.024 13.0 2.6 1.1 1 0 0 1 1 1 0 MviN-like protein Na_H_Exchanger PF00999.16 gi|386000847|ref|YP_005919146.1| - 3.6e-53 180.4 41.9 4.5e-53 180.1 29.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|386000847|ref|YP_005919146.1| - 1.2e-11 44.0 0.0 2e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 TrkA-C domain tRNA-synt_2c PF01411.14 gi|386000848|ref|YP_005919147.1| - 0.073 11.3 0.5 0.081 11.2 0.4 1.1 1 0 0 1 1 1 0 tRNA synthetases class II (A) peroxidase PF00141.18 gi|386000850|ref|YP_005919149.1| - 9.1e-91 303.4 0.0 4.5e-47 160.4 0.0 2.2 2 0 0 2 2 2 2 Peroxidase TF_Zn_Ribbon PF08271.7 gi|386000851|ref|YP_005919150.1| - 0.035 13.4 3.6 0.37 10.1 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|386000851|ref|YP_005919150.1| - 0.054 13.3 6.6 0.098 12.4 4.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|386000851|ref|YP_005919150.1| - 0.086 12.5 5.6 0.11 12.2 3.9 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) IBR PF01485.16 gi|386000851|ref|YP_005919150.1| - 0.11 12.3 5.3 0.13 12.1 3.7 1.1 1 0 0 1 1 1 0 IBR domain Zn-ribbon_8 PF09723.5 gi|386000851|ref|YP_005919150.1| - 0.11 12.4 5.4 0.67 9.9 0.3 2.2 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|386000851|ref|YP_005919150.1| - 0.12 12.0 7.6 0.08 12.6 0.9 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|386000851|ref|YP_005919150.1| - 0.24 10.9 6.9 0.58 9.7 0.3 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|386000851|ref|YP_005919150.1| - 0.59 9.6 6.0 2.2 7.8 0.3 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.7 gi|386000851|ref|YP_005919150.1| - 0.6 9.9 6.6 0.96 9.2 0.6 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-TFIIB PF13453.1 gi|386000851|ref|YP_005919150.1| - 0.66 9.2 5.0 8 5.7 0.3 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger UPF0547 PF10571.4 gi|386000851|ref|YP_005919150.1| - 0.99 9.1 10.7 1.3 8.7 0.6 2.5 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Fer2_4 PF13510.1 gi|386000851|ref|YP_005919150.1| - 1.1 9.1 4.4 1.1 9.0 1.7 1.8 1 1 1 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain PhnA_Zn_Ribbon PF08274.7 gi|386000851|ref|YP_005919150.1| - 1.3 8.8 9.2 0.37 10.6 0.5 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-RING_3 PF14369.1 gi|386000851|ref|YP_005919150.1| - 1.5 8.9 6.6 3.5 7.7 0.3 2.2 2 0 0 2 2 2 0 zinc-finger Zn_Tnp_IS91 PF14319.1 gi|386000851|ref|YP_005919150.1| - 2.1 7.9 5.0 2.8 7.4 3.5 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain DNA_RNApol_7kD PF03604.8 gi|386000851|ref|YP_005919150.1| - 4.1 6.9 8.1 3.8 7.0 0.7 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|386000851|ref|YP_005919150.1| - 4.5 6.6 9.8 38 3.6 0.7 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF2769 PF10967.3 gi|386000851|ref|YP_005919150.1| - 6.2 7.2 9.1 2.8 8.3 1.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2769) Fer4 PF00037.22 gi|386000852|ref|YP_005919151.1| - 2e-10 39.8 16.3 1.7e-06 27.3 2.9 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_5 PF12801.2 gi|386000852|ref|YP_005919151.1| - 2.6e-09 36.7 11.5 9e-06 25.3 2.8 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|386000852|ref|YP_005919151.1| - 4.1e-09 36.5 24.6 1.4e-06 28.4 10.2 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386000852|ref|YP_005919151.1| - 6.4e-09 35.2 20.3 1.7e-05 24.4 1.2 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386000852|ref|YP_005919151.1| - 1e-08 35.4 11.4 0.00034 20.9 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386000852|ref|YP_005919151.1| - 3.3e-08 33.1 28.9 6.5e-07 29.0 11.2 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386000852|ref|YP_005919151.1| - 5.6e-08 33.0 17.1 5.6e-05 23.4 1.5 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386000852|ref|YP_005919151.1| - 6.5e-07 28.9 18.5 0.00018 21.2 0.9 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|386000852|ref|YP_005919151.1| - 1.8e-05 24.6 16.2 0.0001 22.2 10.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386000852|ref|YP_005919151.1| - 2.9e-05 23.8 12.4 0.016 15.0 0.7 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386000852|ref|YP_005919151.1| - 3.5e-05 24.4 14.6 0.00099 19.8 1.7 2.5 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|386000852|ref|YP_005919151.1| - 5.3e-05 23.2 22.1 0.0026 17.9 3.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|386000852|ref|YP_005919151.1| - 0.0002 21.6 16.9 0.00055 20.3 4.2 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|386000852|ref|YP_005919151.1| - 0.00024 21.4 16.2 0.049 13.9 1.9 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|386000852|ref|YP_005919151.1| - 0.0084 16.4 13.9 0.28 11.5 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|386000852|ref|YP_005919151.1| - 0.021 15.3 10.4 0.56 10.8 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF457 PF04307.9 gi|386000853|ref|YP_005919152.1| - 2.1e-11 43.3 10.4 2.8e-11 42.9 7.2 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2273 PF10031.4 gi|386000853|ref|YP_005919152.1| - 0.043 13.4 0.8 0.043 13.4 0.6 3.7 3 1 0 3 3 3 0 Small integral membrane protein (DUF2273) N6_Mtase PF02384.11 gi|386000855|ref|YP_005919154.1| - 1.6e-09 37.3 0.0 0.0015 17.6 0.0 2.9 2 1 0 2 2 2 2 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|386000855|ref|YP_005919154.1| - 7.2e-09 35.6 0.1 3.7e-08 33.4 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|386000855|ref|YP_005919154.1| - 0.00017 21.2 0.0 0.53 9.8 0.0 3.2 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|386000855|ref|YP_005919154.1| - 0.0065 16.8 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPRTase PF14681.1 gi|386000855|ref|YP_005919154.1| - 0.037 13.2 0.0 0.064 12.4 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Phage_tail_T PF06223.7 gi|386000855|ref|YP_005919154.1| - 0.047 14.0 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 Minor tail protein T PIN PF01850.16 gi|386000856|ref|YP_005919155.1| - 2.4e-17 63.3 0.9 2.9e-17 63.1 0.6 1.0 1 0 0 1 1 1 1 PIN domain PB1 PF00564.19 gi|386000856|ref|YP_005919155.1| - 0.022 14.4 0.2 0.081 12.5 0.1 1.9 1 1 1 2 2 2 0 PB1 domain Radical_SAM PF04055.16 gi|386000857|ref|YP_005919156.1| - 1.9e-08 34.6 0.0 1.2e-07 32.0 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|386000857|ref|YP_005919156.1| - 0.00015 21.8 0.0 0.00026 21.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|386000857|ref|YP_005919156.1| - 0.0096 15.9 0.2 0.017 15.1 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TPR_11 PF13414.1 gi|386000858|ref|YP_005919157.1| - 2.1e-200 648.7 90.6 6.3e-20 70.5 0.3 11.4 3 3 8 13 13 13 13 TPR repeat TPR_1 PF00515.23 gi|386000858|ref|YP_005919157.1| - 5.7e-187 598.6 68.1 1.4e-12 46.6 0.3 18.0 18 0 0 18 18 18 18 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386000858|ref|YP_005919157.1| - 4.8e-161 510.1 67.6 7e-10 38.0 1.8 18.0 18 0 0 18 18 18 18 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386000858|ref|YP_005919157.1| - 1.2e-139 452.6 85.3 1.1e-15 57.8 1.0 11.2 4 3 9 14 14 14 13 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386000858|ref|YP_005919157.1| - 4.7e-138 449.4 62.8 1.8e-12 47.0 0.1 11.6 1 1 16 17 17 17 17 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386000858|ref|YP_005919157.1| - 1.4e-129 411.7 54.2 1.8e-08 33.9 0.2 17.2 17 0 0 17 17 17 17 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386000858|ref|YP_005919157.1| - 5.9e-102 326.0 51.5 5e-06 25.9 0.0 18.0 18 0 0 18 18 18 18 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386000858|ref|YP_005919157.1| - 8.4e-88 280.7 59.6 1.5e-06 28.2 0.2 17.7 2 2 16 18 18 18 17 Tetratricopeptide repeat Apc3 PF12895.2 gi|386000858|ref|YP_005919157.1| - 2.3e-71 235.9 55.4 8e-10 38.7 0.3 8.2 1 1 14 15 15 15 15 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|386000858|ref|YP_005919157.1| - 1.7e-64 214.0 63.2 9.9e-10 38.6 1.4 11.8 4 4 8 12 12 12 12 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386000858|ref|YP_005919157.1| - 9.5e-57 184.3 51.1 0.0019 17.8 0.1 17.8 18 0 0 18 18 18 14 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386000858|ref|YP_005919157.1| - 1.1e-55 182.3 38.6 0.00049 20.3 0.4 17.8 18 0 0 18 18 18 12 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386000858|ref|YP_005919157.1| - 1e-42 143.7 37.5 1.1e-06 28.3 0.8 9.7 5 2 3 10 10 10 10 Tetratricopeptide repeat NARP1 PF12569.3 gi|386000858|ref|YP_005919157.1| - 1.8e-33 116.1 10.5 0.00043 19.1 0.0 8.7 2 1 7 10 10 10 10 NMDA receptor-regulated protein 1 TPR_3 PF07720.7 gi|386000858|ref|YP_005919157.1| - 1.1e-29 101.6 40.2 0.27 11.0 0.8 16.5 16 1 1 17 17 16 10 Tetratricopeptide repeat MIT PF04212.13 gi|386000858|ref|YP_005919157.1| - 5.5e-26 90.2 68.4 0.14 12.0 0.3 17.7 15 3 2 18 18 18 10 MIT (microtubule interacting and transport) domain Apc5 PF12862.2 gi|386000858|ref|YP_005919157.1| - 2.2e-19 69.0 16.3 12 5.8 0.0 16.0 8 3 8 16 16 16 0 Anaphase-promoting complex subunit 5 TPR_10 PF13374.1 gi|386000858|ref|YP_005919157.1| - 3.4e-17 61.7 55.8 0.12 12.3 0.2 15.3 15 0 0 15 15 15 5 Tetratricopeptide repeat TPR_4 PF07721.9 gi|386000858|ref|YP_005919157.1| - 9.3e-15 53.4 1.0 3.6 8.2 0.0 12.3 14 0 0 14 14 9 0 Tetratricopeptide repeat FAT PF02259.18 gi|386000858|ref|YP_005919157.1| - 7.9e-14 51.4 20.5 0.005 15.8 0.5 11.5 1 1 7 9 9 9 3 FAT domain BTAD PF03704.12 gi|386000858|ref|YP_005919157.1| - 5.7e-13 49.4 15.0 0.0079 16.5 0.1 7.2 3 2 3 7 7 6 4 Bacterial transcriptional activator domain Lambda_Kil PF06301.6 gi|386000858|ref|YP_005919157.1| - 9.1e-12 44.2 7.0 17 4.9 0.0 13.8 16 0 0 16 16 16 0 Bacteriophage lambda Kil protein PPR PF01535.15 gi|386000858|ref|YP_005919157.1| - 1.1e-11 43.8 1.0 32 4.8 0.0 12.6 14 0 0 14 14 12 0 PPR repeat DUF3856 PF12968.2 gi|386000858|ref|YP_005919157.1| - 1.4e-10 41.1 14.4 0.65 9.8 0.0 11.9 2 1 13 15 15 13 1 Domain of Unknown Function (DUF3856) Fis1_TPR_C PF14853.1 gi|386000858|ref|YP_005919157.1| - 5.9e-09 35.6 31.3 3.1 7.7 0.0 14.8 14 2 2 16 16 16 1 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.1 gi|386000858|ref|YP_005919157.1| - 1.6e-08 33.9 18.2 0.21 10.6 0.0 9.6 1 1 8 10 10 10 3 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|386000858|ref|YP_005919157.1| - 2.4e-08 33.1 14.3 9.1 5.6 0.0 11.7 14 0 0 14 14 12 0 SHNi-TPR BPS PF08947.5 gi|386000858|ref|YP_005919157.1| - 9.8e-07 28.3 7.8 27 4.4 0.0 10.0 6 3 5 11 11 11 0 BPS (Between PH and SH2) DUF1250 PF06855.7 gi|386000858|ref|YP_005919157.1| - 1.4e-06 27.6 0.8 35 4.0 0.0 9.4 12 0 0 12 12 10 0 Protein of unknown function (DUF1250) TPR_20 PF14561.1 gi|386000858|ref|YP_005919157.1| - 1.6e-06 28.1 23.8 1.2 9.2 0.6 8.5 2 1 10 13 13 13 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|386000858|ref|YP_005919157.1| - 5.8e-06 26.5 14.9 2.1 8.5 0.0 8.8 3 3 4 11 11 11 1 Alkyl sulfatase dimerisation DUF627 PF04781.7 gi|386000858|ref|YP_005919157.1| - 1.2e-05 24.8 0.0 59 3.3 0.0 7.3 3 3 3 8 8 8 0 Protein of unknown function (DUF627) PPTA PF01239.17 gi|386000858|ref|YP_005919157.1| - 7.1e-05 21.9 14.4 27 4.3 0.0 9.9 11 0 0 11 11 10 0 Protein prenyltransferase alpha subunit repeat Rapsyn_N PF10579.4 gi|386000858|ref|YP_005919157.1| - 8.9e-05 22.2 4.7 16 5.3 0.0 6.6 7 1 1 8 8 6 0 Rapsyn N-terminal myristoylation and linker region SNAP PF14938.1 gi|386000858|ref|YP_005919157.1| - 0.00076 18.7 35.8 0.0029 16.7 3.5 8.3 2 1 4 7 7 6 3 Soluble NSF attachment protein, SNAP TPR_21 PF09976.4 gi|386000858|ref|YP_005919157.1| - 0.0011 18.8 63.1 0.23 11.3 1.9 11.2 7 3 7 14 14 14 5 Tetratricopeptide repeat TPR_5 PF12688.2 gi|386000858|ref|YP_005919157.1| - 0.0026 17.7 12.5 3.5 7.7 0.0 7.2 5 1 2 8 8 8 0 Tetratrico peptide repeat MAS20 PF02064.10 gi|386000858|ref|YP_005919157.1| - 0.022 14.6 0.0 1.1e+02 2.7 0.0 5.6 6 3 1 7 7 4 0 MAS20 protein import receptor 4HB_MCP_1 PF12729.2 gi|386000858|ref|YP_005919157.1| - 0.031 13.6 20.0 16 4.8 0.1 9.8 9 3 3 12 12 12 0 Four helix bundle sensory module for signal transduction RPN7 PF10602.4 gi|386000858|ref|YP_005919157.1| - 0.05 12.9 21.3 8.6 5.6 0.6 9.3 6 3 3 11 11 11 0 26S proteasome subunit RPN7 MT0933_antitox PF14013.1 gi|386000858|ref|YP_005919157.1| - 0.084 12.9 9.5 1.4e+02 2.6 0.0 7.1 8 0 0 8 8 6 0 MT0933-like antitoxin protein TraD PF06412.6 gi|386000858|ref|YP_005919157.1| - 0.15 11.6 12.1 0.51 9.9 0.1 6.9 11 1 1 12 12 5 0 Conjugal transfer protein TraD DUF2017 PF09438.5 gi|386000858|ref|YP_005919157.1| - 0.16 11.5 14.5 19 4.7 0.0 8.3 7 2 2 11 11 9 0 Domain of unknown function (DUF2017) FIVAR PF07554.8 gi|386000858|ref|YP_005919157.1| - 0.23 11.7 37.8 46 4.4 0.0 13.3 16 0 0 16 16 14 0 Uncharacterised Sugar-binding Domain Coatomer_E PF04733.9 gi|386000858|ref|YP_005919157.1| - 0.31 10.2 5.5 10 5.2 0.0 4.7 5 1 1 6 6 5 0 Coatomer epsilon subunit Glucosaminidase PF01832.15 gi|386000858|ref|YP_005919157.1| - 0.56 10.3 29.8 2.4 8.2 1.4 7.1 2 2 3 7 7 7 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TAP_C PF03943.8 gi|386000858|ref|YP_005919157.1| - 0.62 9.5 6.1 1e+02 2.4 0.0 6.1 5 1 1 6 6 6 0 TAP C-terminal domain SPO22 PF08631.5 gi|386000858|ref|YP_005919157.1| - 0.99 8.4 10.6 12 4.8 0.3 6.0 5 1 1 6 6 5 0 Meiosis protein SPO22/ZIP4 like Alk_phosphatase PF00245.15 gi|386000859|ref|YP_005919158.1| - 5.9e-95 318.4 0.8 3.6e-88 296.0 0.8 2.1 2 0 0 2 2 2 2 Alkaline phosphatase Metalloenzyme PF01676.13 gi|386000859|ref|YP_005919158.1| - 5.1e-06 26.0 0.1 1.2e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|386000859|ref|YP_005919158.1| - 0.00057 19.1 0.0 0.0074 15.5 0.0 2.1 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|386000859|ref|YP_005919158.1| - 0.0011 18.3 0.1 0.0027 17.0 0.1 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase tRNA-synt_2b PF00587.20 gi|386000862|ref|YP_005919161.1| - 2.7e-14 53.1 0.0 3.9e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.15 gi|386000862|ref|YP_005919161.1| - 0.0038 16.4 0.0 0.0078 15.4 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) DHHA1 PF02272.14 gi|386000864|ref|YP_005919163.1| - 6.1e-13 48.2 1.1 1.4e-12 47.0 0.8 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|386000864|ref|YP_005919163.1| - 3.5e-10 39.6 0.1 6.7e-10 38.7 0.1 1.4 1 0 0 1 1 1 1 DHH family Ribosomal_S15 PF00312.17 gi|386000865|ref|YP_005919164.1| - 3.2e-17 62.0 1.0 4e-17 61.7 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|386000865|ref|YP_005919164.1| - 2.9e-08 33.4 0.1 3.5e-07 29.9 0.0 2.3 2 1 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain PulS_OutS PF09691.5 gi|386000865|ref|YP_005919164.1| - 0.028 14.3 0.2 0.039 13.9 0.1 1.1 1 0 0 1 1 1 0 Bacterial chaperone lipoprotein (PulS_OutS) DUF2854 PF11016.3 gi|386000865|ref|YP_005919164.1| - 0.053 13.0 0.1 0.068 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2854) MSA-2c PF12238.3 gi|386000865|ref|YP_005919164.1| - 0.059 13.0 0.0 0.075 12.6 0.0 1.1 1 0 0 1 1 1 0 Merozoite surface antigen 2c Remorin_C PF03763.8 gi|386000865|ref|YP_005919164.1| - 0.088 12.3 0.1 0.18 11.3 0.1 1.5 1 1 0 1 1 1 0 Remorin, C-terminal region KAR9 PF08580.5 gi|386000865|ref|YP_005919164.1| - 0.12 10.6 0.5 0.14 10.4 0.3 1.0 1 0 0 1 1 1 0 Yeast cortical protein KAR9 DUF116 PF01976.12 gi|386000866|ref|YP_005919165.1| - 2.3e-44 150.6 0.0 2.9e-44 150.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 UPF0182 PF03699.8 gi|386000867|ref|YP_005919166.1| - 4.5e-276 917.7 11.7 1.9e-269 895.8 0.9 2.0 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0182) Fer4 PF00037.22 gi|386000868|ref|YP_005919167.1| - 6.6e-19 66.6 16.7 1.6e-09 36.9 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|386000868|ref|YP_005919167.1| - 2e-13 49.5 16.3 1.1e-06 28.1 3.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386000868|ref|YP_005919167.1| - 3.4e-12 46.5 15.0 4.2e-12 46.2 10.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386000868|ref|YP_005919167.1| - 7e-12 44.5 16.4 8.1e-07 28.6 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386000868|ref|YP_005919167.1| - 8.6e-12 44.6 13.1 1.1e-11 44.3 9.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386000868|ref|YP_005919167.1| - 9.2e-12 45.0 13.9 1.2e-11 44.6 9.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386000868|ref|YP_005919167.1| - 8.1e-11 42.5 13.9 6.7e-06 26.7 1.4 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|386000868|ref|YP_005919167.1| - 5.4e-10 38.9 14.3 6.4e-10 38.7 9.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386000868|ref|YP_005919167.1| - 7.6e-08 32.0 14.9 0.00018 21.6 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386000868|ref|YP_005919167.1| - 1.7e-07 31.6 17.0 0.00019 21.9 11.8 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|386000868|ref|YP_005919167.1| - 2.3e-07 30.8 19.3 0.00022 21.5 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|386000868|ref|YP_005919167.1| - 2.3e-07 31.0 15.2 0.00014 22.1 1.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386000868|ref|YP_005919167.1| - 4.3e-07 29.8 16.5 9e-06 25.6 11.5 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|386000868|ref|YP_005919167.1| - 6.8e-07 29.5 17.2 0.00016 22.0 3.2 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|386000868|ref|YP_005919167.1| - 0.00013 21.8 7.8 0.00015 21.6 5.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386000868|ref|YP_005919167.1| - 0.00046 20.5 16.8 0.031 14.6 2.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|386000868|ref|YP_005919167.1| - 1.3 8.9 11.5 3 7.7 7.9 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster NRDD PF13597.1 gi|386000869|ref|YP_005919168.1| - 2.4e-143 478.1 0.0 3.2e-80 269.7 0.0 2.1 2 0 0 2 2 2 2 Anaerobic ribonucleoside-triphosphate reductase LAGLIDADG_3 PF14528.1 gi|386000869|ref|YP_005919168.1| - 2.9e-05 24.2 0.0 0.14 12.3 0.0 2.7 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|386000869|ref|YP_005919168.1| - 6e-05 22.0 0.0 0.00037 19.4 0.0 2.1 1 1 0 1 1 1 1 Intein splicing domain FMN_red PF03358.10 gi|386000870|ref|YP_005919169.1| - 6.5e-34 116.6 0.0 7.7e-34 116.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|386000870|ref|YP_005919169.1| - 8.9e-08 31.8 0.0 1.2e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold 3-dmu-9_3-mt PF06983.8 gi|386000871|ref|YP_005919170.1| - 4.1e-32 110.9 0.1 4e-30 104.5 0.1 2.1 1 1 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase Ribonuc_L-PSP PF01042.16 gi|386000872|ref|YP_005919171.1| - 1.4e-20 73.2 0.1 1.7e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF91 PF01939.11 gi|386000873|ref|YP_005919172.1| - 0.0037 16.4 0.1 0.0061 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF91 Ribonuc_L-PSP PF01042.16 gi|386000875|ref|YP_005919174.1| - 0.014 15.1 0.0 0.015 15.0 0.0 1.1 1 0 0 1 1 1 0 Endoribonuclease L-PSP XhoI PF04555.8 gi|386000876|ref|YP_005919175.1| - 7.8e-84 279.9 0.0 9.8e-84 279.6 0.0 1.0 1 0 0 1 1 1 1 Restriction endonuclease XhoI N6_N4_Mtase PF01555.13 gi|386000877|ref|YP_005919176.1| - 8.9e-37 126.7 0.0 1.3e-36 126.2 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|386000877|ref|YP_005919176.1| - 6.6e-13 48.7 0.0 1.4e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|386000877|ref|YP_005919176.1| - 6.7e-06 25.7 0.0 0.00032 20.3 0.0 2.2 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|386000877|ref|YP_005919176.1| - 0.045 14.3 0.0 15 6.1 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386000877|ref|YP_005919176.1| - 0.089 12.5 0.0 0.76 9.4 0.0 2.2 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386000877|ref|YP_005919176.1| - 0.096 13.1 0.0 0.42 11.1 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Met_10 PF02475.11 gi|386000877|ref|YP_005919176.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein ALAD PF00490.16 gi|386000878|ref|YP_005919177.1| - 3.1e-144 479.7 0.1 3.5e-144 479.6 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase GlutR_N PF05201.10 gi|386000879|ref|YP_005919178.1| - 1.3e-37 128.7 0.1 2.3e-37 127.9 0.0 1.4 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|386000879|ref|YP_005919178.1| - 5.4e-34 117.2 0.0 1e-33 116.2 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|386000879|ref|YP_005919178.1| - 8.1e-24 83.5 1.3 1.7e-23 82.4 0.9 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|386000879|ref|YP_005919178.1| - 5.7e-05 23.4 0.5 0.00053 20.3 0.0 2.7 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|386000879|ref|YP_005919178.1| - 0.017 14.2 0.0 0.049 12.7 0.0 1.7 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|386000879|ref|YP_005919178.1| - 0.067 11.9 0.0 0.11 11.2 0.0 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Saccharop_dh PF03435.13 gi|386000879|ref|YP_005919178.1| - 0.12 11.3 0.1 0.73 8.7 0.0 1.9 2 0 0 2 2 2 0 Saccharopine dehydrogenase THF_DHG_CYH_C PF02882.14 gi|386000879|ref|YP_005919178.1| - 0.14 11.1 0.0 1.9 7.5 0.0 2.5 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CysG_dimeriser PF10414.4 gi|386000880|ref|YP_005919179.1| - 6.5e-06 25.5 0.1 1.5e-05 24.3 0.1 1.7 2 0 0 2 2 2 1 Sirohaem synthase dimerisation region Sirohm_synth_M PF14824.1 gi|386000880|ref|YP_005919179.1| - 0.0036 16.2 0.1 0.0052 15.7 0.0 1.3 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central HTH_AsnC-type PF13404.1 gi|386000882|ref|YP_005919181.1| - 5.8e-07 28.9 1.6 7.3e-05 22.2 0.5 2.4 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain DUF3015 PF11220.3 gi|386000882|ref|YP_005919181.1| - 0.017 14.7 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3015) HTH_24 PF13412.1 gi|386000882|ref|YP_005919181.1| - 0.059 12.7 1.4 0.89 8.9 0.6 2.3 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Beta_helix PF13229.1 gi|386000883|ref|YP_005919182.1| - 9.2e-62 207.4 71.0 2.1e-18 66.5 3.2 5.8 1 1 6 7 7 7 7 Right handed beta helix region NosD PF05048.8 gi|386000883|ref|YP_005919182.1| - 1.3e-61 207.8 48.4 4.6e-21 75.0 2.1 5.9 1 1 5 6 6 6 6 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.2 gi|386000883|ref|YP_005919182.1| - 0.02 15.0 24.7 0.6 10.1 0.3 5.6 3 2 1 5 5 5 0 Pectate lyase superfamily protein Response_reg PF00072.19 gi|386000884|ref|YP_005919183.1| - 3.1e-17 62.5 0.0 5.9e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|386000884|ref|YP_005919183.1| - 7.3e-09 35.9 0.0 1.2e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|386000884|ref|YP_005919183.1| - 2.1e-08 34.1 0.0 5.3e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|386000884|ref|YP_005919183.1| - 8.3e-08 32.0 0.0 2.1e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|386000884|ref|YP_005919183.1| - 3.3e-07 29.9 0.0 1.4e-06 27.9 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|386000884|ref|YP_005919183.1| - 0.0005 20.1 0.1 0.0013 18.8 0.1 1.7 1 1 0 1 1 1 1 PAS fold GAF_2 PF13185.1 gi|386000884|ref|YP_005919183.1| - 0.025 15.0 0.0 0.062 13.7 0.0 1.7 1 0 0 1 1 1 0 GAF domain AAA_18 PF13238.1 gi|386000885|ref|YP_005919184.1| - 1.4e-20 73.9 0.0 1.8e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|386000885|ref|YP_005919184.1| - 1.9e-12 48.0 0.0 2.8e-12 47.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|386000885|ref|YP_005919184.1| - 0.00031 20.6 0.4 0.5 10.2 0.1 2.5 3 0 0 3 3 3 2 AAA domain KaiC PF06745.8 gi|386000885|ref|YP_005919184.1| - 0.0018 17.4 0.0 0.0022 17.1 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_19 PF13245.1 gi|386000885|ref|YP_005919184.1| - 0.0098 15.6 3.3 0.024 14.4 2.3 1.9 1 1 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|386000885|ref|YP_005919184.1| - 0.017 15.0 4.3 0.061 13.2 2.9 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|386000885|ref|YP_005919184.1| - 0.023 14.8 0.0 0.043 14.0 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF1884 PF08967.5 gi|386000885|ref|YP_005919184.1| - 0.06 13.4 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) CbiA PF01656.18 gi|386000885|ref|YP_005919184.1| - 0.14 11.5 0.4 10 5.4 0.1 2.2 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.1 gi|386000885|ref|YP_005919184.1| - 0.14 11.5 0.6 0.18 11.1 0.4 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|386000885|ref|YP_005919184.1| - 0.29 11.0 2.0 1.2 9.0 1.4 2.0 1 1 0 1 1 1 0 AAA ATPase domain Aminotran_1_2 PF00155.16 gi|386000886|ref|YP_005919185.1| - 2e-43 148.7 0.0 4.1e-43 147.7 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|386000886|ref|YP_005919185.1| - 0.0038 15.9 0.0 0.0057 15.3 0.0 1.1 1 0 0 1 1 1 1 Allinase FAA_hydrolase PF01557.13 gi|386000886|ref|YP_005919185.1| - 0.062 12.7 0.0 7.8 5.8 0.0 2.3 2 0 0 2 2 2 0 Fumarylacetoacetate (FAA) hydrolase family HEM4 PF02602.10 gi|386000886|ref|YP_005919185.1| - 0.08 12.1 0.0 3.2 6.9 0.0 2.5 2 1 0 2 2 2 0 Uroporphyrinogen-III synthase HemD Cys_Met_Meta_PP PF01053.15 gi|386000886|ref|YP_005919185.1| - 0.14 10.4 0.0 0.19 9.9 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.16 gi|386000887|ref|YP_005919186.1| - 1.5e-99 333.1 0.0 1.8e-99 332.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.15 gi|386000887|ref|YP_005919186.1| - 0.017 13.4 0.0 0.025 12.8 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|386000887|ref|YP_005919186.1| - 0.018 14.1 0.1 0.044 12.9 0.0 1.7 2 0 0 2 2 2 0 Beta-eliminating lyase Lactamase_B PF00753.22 gi|386000888|ref|YP_005919187.1| - 3.3e-34 118.2 1.8 3.9e-34 118.0 1.3 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|386000888|ref|YP_005919187.1| - 4.6e-10 39.3 0.0 6.1e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|386000888|ref|YP_005919187.1| - 0.044 13.4 0.1 0.075 12.7 0.0 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Plasmid_stabil PF05016.9 gi|386000890|ref|YP_005919189.1| - 7e-09 35.9 0.2 8.3e-09 35.7 0.2 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Pea-VEAacid PF08111.6 gi|386000890|ref|YP_005919189.1| - 0.091 12.8 0.2 0.26 11.4 0.1 1.8 1 0 0 1 1 1 0 Pea-VEAacid family GyrI-like PF06445.10 gi|386000891|ref|YP_005919190.1| - 1.3e-19 70.8 0.0 1.4e-19 70.6 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain SOUL PF04832.7 gi|386000891|ref|YP_005919190.1| - 0.0027 17.2 0.1 0.046 13.2 0.0 2.0 1 1 1 2 2 2 2 SOUL heme-binding protein DUF1451 PF07295.6 gi|386000892|ref|YP_005919191.1| - 0.2 11.4 1.3 0.32 10.7 0.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1451) ICMT PF04140.9 gi|386000893|ref|YP_005919192.1| - 5.3e-15 55.3 0.1 1.1e-14 54.3 0.0 1.5 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.8 gi|386000893|ref|YP_005919192.1| - 2.2e-10 40.5 0.0 3.8e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Phospholipid methyltransferase DUF1295 PF06966.7 gi|386000893|ref|YP_005919192.1| - 8.6e-06 25.2 0.1 9.9e-06 25.0 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) NnrU PF07298.6 gi|386000893|ref|YP_005919192.1| - 0.0022 17.4 4.3 0.0022 17.4 3.0 1.9 1 1 1 2 2 2 1 NnrU protein ERG4_ERG24 PF01222.12 gi|386000893|ref|YP_005919192.1| - 0.087 11.3 0.0 0.15 10.5 0.0 1.5 1 1 0 1 1 1 0 Ergosterol biosynthesis ERG4/ERG24 family Lactamase_B PF00753.22 gi|386000894|ref|YP_005919193.1| - 1e-32 113.3 2.0 1.3e-32 113.0 1.4 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|386000894|ref|YP_005919193.1| - 5.2e-09 35.9 0.0 7.1e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ThiC PF01964.13 gi|386000895|ref|YP_005919194.1| - 8.2e-173 574.7 0.0 9.4e-173 574.5 0.0 1.0 1 0 0 1 1 1 1 ThiC family Amidohydro_4 PF13147.1 gi|386000895|ref|YP_005919194.1| - 5e-05 23.4 0.2 0.0037 17.3 0.1 2.5 1 1 1 2 2 2 2 Amidohydrolase AMMECR1 PF01871.12 gi|386000896|ref|YP_005919195.1| - 9.3e-57 190.8 0.0 1.1e-56 190.6 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 DUF4134 PF13572.1 gi|386000897|ref|YP_005919196.1| - 0.029 14.4 1.1 0.15 12.2 0.3 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4134) Virul_fac_BrkB PF03631.10 gi|386000897|ref|YP_005919196.1| - 0.069 12.4 1.5 0.14 11.5 0.2 2.0 2 1 0 2 2 2 0 Virulence factor BrkB Cyt_c_ox_IV PF12270.3 gi|386000897|ref|YP_005919196.1| - 0.11 12.2 0.8 0.19 11.4 0.0 1.8 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IV EpsG PF14897.1 gi|386000897|ref|YP_005919196.1| - 0.35 9.7 3.0 0.91 8.3 0.2 2.0 2 0 0 2 2 2 0 EpsG family Rubrerythrin PF02915.12 gi|386000898|ref|YP_005919197.1| - 6.9e-23 81.4 13.0 3.7e-22 79.1 9.0 1.8 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|386000898|ref|YP_005919197.1| - 0.00012 21.8 3.8 0.00017 21.3 2.6 1.2 1 0 0 1 1 1 1 Ferritin-like domain Cys_rich_CPCC PF14206.1 gi|386000898|ref|YP_005919197.1| - 0.024 14.1 0.9 0.058 12.9 0.6 1.6 1 0 0 1 1 1 0 Cysteine-rich CPCC Rubredoxin PF00301.15 gi|386000898|ref|YP_005919197.1| - 0.033 14.0 4.1 2.9 7.8 0.4 2.4 2 0 0 2 2 2 0 Rubredoxin DZR PF12773.2 gi|386000898|ref|YP_005919197.1| - 0.076 12.8 0.4 0.13 12.1 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-nanos PF05741.8 gi|386000898|ref|YP_005919197.1| - 0.11 12.4 0.7 13 5.8 0.0 2.6 2 0 0 2 2 2 0 Nanos RNA binding domain Acetone_carb_G PF08882.6 gi|386000898|ref|YP_005919197.1| - 0.12 12.4 0.4 0.26 11.3 0.3 1.6 1 0 0 1 1 1 0 Acetone carboxylase gamma subunit DNA_ligase_ZBD PF03119.11 gi|386000898|ref|YP_005919197.1| - 0.16 11.7 8.6 0.51 10.0 1.2 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain OrfB_Zn_ribbon PF07282.6 gi|386000898|ref|YP_005919197.1| - 0.16 11.6 0.9 0.53 9.9 0.7 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.1 gi|386000898|ref|YP_005919197.1| - 0.16 12.3 1.2 1.7 9.1 0.0 2.4 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_4 PF13894.1 gi|386000898|ref|YP_005919197.1| - 0.16 12.3 0.5 35 5.0 0.0 2.8 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ISL3 PF14690.1 gi|386000898|ref|YP_005919197.1| - 0.34 10.9 3.7 2.1 8.4 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prim_Zn_Ribbon PF08273.7 gi|386000898|ref|YP_005919197.1| - 1.4 9.0 6.6 1.6 8.8 0.6 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase RRN7 PF11781.3 gi|386000898|ref|YP_005919197.1| - 1.6 8.2 7.0 0.2 11.1 0.5 2.2 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF1610 PF07754.6 gi|386000898|ref|YP_005919197.1| - 1.9 8.7 7.6 3.4 7.8 0.8 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-FPG_IleRS PF06827.9 gi|386000898|ref|YP_005919197.1| - 2 8.1 5.5 55 3.5 4.2 2.3 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS PRK PF00485.13 gi|386000899|ref|YP_005919198.1| - 3.5e-43 147.4 0.0 5.2e-43 146.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|386000899|ref|YP_005919198.1| - 1.8e-06 28.7 0.0 4.4e-06 27.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|386000899|ref|YP_005919198.1| - 0.00028 20.9 0.0 0.00049 20.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|386000899|ref|YP_005919198.1| - 0.0013 18.3 0.0 0.0021 17.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|386000899|ref|YP_005919198.1| - 0.0015 18.8 0.0 0.0026 18.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|386000899|ref|YP_005919198.1| - 0.0057 16.3 0.0 0.015 14.9 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|386000899|ref|YP_005919198.1| - 0.0085 15.2 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|386000899|ref|YP_005919198.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|386000899|ref|YP_005919198.1| - 0.015 15.1 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|386000899|ref|YP_005919198.1| - 0.016 14.8 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|386000899|ref|YP_005919198.1| - 0.022 15.0 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.1 gi|386000899|ref|YP_005919198.1| - 0.026 14.0 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|386000899|ref|YP_005919198.1| - 0.03 13.8 0.1 0.055 13.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain zf-CGNR PF11706.3 gi|386000899|ref|YP_005919198.1| - 0.036 13.5 0.3 0.069 12.6 0.2 1.4 1 0 0 1 1 1 0 CGNR zinc finger AAA_22 PF13401.1 gi|386000899|ref|YP_005919198.1| - 0.054 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|386000899|ref|YP_005919198.1| - 0.062 12.1 0.1 0.088 11.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain CbiA PF01656.18 gi|386000899|ref|YP_005919198.1| - 0.068 12.5 0.1 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_23 PF13476.1 gi|386000899|ref|YP_005919198.1| - 0.15 12.3 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|386000899|ref|YP_005919198.1| - 0.17 12.4 0.0 0.33 11.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Antibiotic_NAT PF02522.9 gi|386000900|ref|YP_005919199.1| - 0.049 12.8 0.0 0.064 12.4 0.0 1.1 1 0 0 1 1 1 0 Aminoglycoside 3-N-acetyltransferase DUF1743 PF08489.6 gi|386000902|ref|YP_005919201.1| - 4.5e-41 139.3 0.0 7.5e-41 138.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|386000902|ref|YP_005919201.1| - 0.016 15.0 0.0 0.037 13.8 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|386000902|ref|YP_005919201.1| - 0.041 13.5 0.4 0.079 12.6 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|386000902|ref|YP_005919201.1| - 0.077 12.8 2.7 0.15 11.8 1.9 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DHHA2 PF02833.9 gi|386000903|ref|YP_005919202.1| - 2e-36 124.9 0.5 3.2e-36 124.3 0.4 1.3 1 0 0 1 1 1 1 DHHA2 domain DHH PF01368.15 gi|386000903|ref|YP_005919202.1| - 6.4e-21 74.5 0.2 1.1e-20 73.7 0.2 1.4 1 0 0 1 1 1 1 DHH family DSBA PF01323.15 gi|386000903|ref|YP_005919202.1| - 0.077 12.5 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 DSBA-like thioredoxin domain Thymidylate_kin PF02223.12 gi|386000904|ref|YP_005919203.1| - 6.6e-32 110.3 0.0 8.3e-32 110.0 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|386000904|ref|YP_005919203.1| - 0.012 15.5 0.2 0.11 12.3 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|386000904|ref|YP_005919203.1| - 0.11 12.2 1.9 0.27 11.0 0.1 2.4 2 1 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|386000904|ref|YP_005919203.1| - 0.13 11.6 0.2 0.27 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|386000904|ref|YP_005919203.1| - 0.16 12.1 0.0 0.39 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|386000904|ref|YP_005919203.1| - 0.16 11.5 0.0 0.44 10.1 0.0 1.6 2 0 0 2 2 2 0 NACHT domain MAF_flag10 PF01973.13 gi|386000905|ref|YP_005919204.1| - 2e-28 99.0 0.0 7.1e-28 97.2 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|386000905|ref|YP_005919204.1| - 0.048 13.2 0.0 0.33 10.5 0.0 2.0 2 0 0 2 2 2 0 Thiamin pyrophosphokinase, catalytic domain NIR_SIR PF01077.17 gi|386000907|ref|YP_005919206.1| - 1.1e-21 76.8 0.0 1.8e-21 76.1 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|386000907|ref|YP_005919206.1| - 7.8e-14 51.0 0.0 1.5e-13 50.1 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|386000907|ref|YP_005919206.1| - 1.3e-13 49.9 16.4 2.3e-07 30.1 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|386000907|ref|YP_005919206.1| - 4e-13 48.5 14.0 4e-07 29.6 2.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386000907|ref|YP_005919206.1| - 5.7e-12 45.2 23.9 6.4e-09 35.4 9.3 2.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386000907|ref|YP_005919206.1| - 1.4e-10 40.3 15.7 1.8e-05 24.3 2.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386000907|ref|YP_005919206.1| - 2.3e-09 37.4 15.4 0.00021 21.6 5.4 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386000907|ref|YP_005919206.1| - 2.9e-08 33.4 12.8 0.00069 19.4 1.9 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386000907|ref|YP_005919206.1| - 1.5e-07 31.5 16.4 0.00083 19.5 0.6 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386000907|ref|YP_005919206.1| - 7.4e-06 26.6 5.2 0.025 15.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|386000907|ref|YP_005919206.1| - 2.9e-05 24.0 22.7 0.00045 20.1 9.6 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386000907|ref|YP_005919206.1| - 0.00046 20.5 21.9 0.023 15.2 5.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|386000907|ref|YP_005919206.1| - 0.00094 19.3 20.5 0.01 16.1 1.0 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386000907|ref|YP_005919206.1| - 0.0013 19.2 18.2 0.0066 16.9 1.0 3.5 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|386000907|ref|YP_005919206.1| - 0.0029 18.0 16.9 0.18 12.2 1.6 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386000907|ref|YP_005919206.1| - 0.045 14.1 16.7 0.41 11.0 1.8 2.6 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|386000907|ref|YP_005919206.1| - 0.047 14.0 0.3 0.047 14.0 0.2 3.0 4 0 0 4 4 2 0 4Fe-4S single cluster domain DUF3810 PF12725.2 gi|386000908|ref|YP_005919207.1| - 4.9 5.9 11.4 0.39 9.5 1.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) Synaptobrevin PF00957.16 gi|386000908|ref|YP_005919207.1| - 7.4 6.2 13.4 4.3 7.0 0.4 4.1 2 2 1 3 3 3 0 Synaptobrevin Lactamase_B_3 PF13483.1 gi|386000909|ref|YP_005919208.1| - 2.7e-24 85.6 0.0 3.4e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|386000909|ref|YP_005919208.1| - 6.3e-20 71.5 0.0 8.2e-20 71.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|386000909|ref|YP_005919208.1| - 3.6e-12 46.3 1.6 6.3e-12 45.5 1.1 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily CGI-121 PF08617.5 gi|386000910|ref|YP_005919209.1| - 4e-20 72.1 0.0 2.7e-19 69.4 0.0 1.8 1 1 0 1 1 1 1 Kinase binding protein CGI-121 DUF2150 PF09920.4 gi|386000911|ref|YP_005919210.1| - 5.6e-59 198.9 0.7 6.4e-59 198.7 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Peptidase_M24 PF00557.19 gi|386000912|ref|YP_005919211.1| - 4.5e-43 147.2 0.0 4.9e-43 147.1 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.19 gi|386000913|ref|YP_005919212.1| - 1.4e-35 122.7 0.0 1.8e-35 122.3 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 PcrB PF01884.12 gi|386000914|ref|YP_005919213.1| - 3.3e-77 258.8 0.0 3.9e-77 258.6 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|386000914|ref|YP_005919213.1| - 0.00022 20.5 0.1 0.00046 19.5 0.0 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|386000914|ref|YP_005919213.1| - 0.072 12.0 0.3 0.12 11.3 0.2 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Ribul_P_3_epim PF00834.14 gi|386000914|ref|YP_005919213.1| - 0.093 11.8 0.1 0.16 11.0 0.1 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family NanE PF04131.9 gi|386000914|ref|YP_005919213.1| - 0.14 11.0 3.5 0.49 9.3 0.2 2.3 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|386000914|ref|YP_005919213.1| - 0.15 11.1 0.1 0.27 10.2 0.1 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Nitro_FeMo-Co PF02579.12 gi|386000914|ref|YP_005919213.1| - 0.31 11.1 1.5 3.9 7.6 0.1 2.2 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor ThiG PF05690.9 gi|386000914|ref|YP_005919213.1| - 0.36 9.8 4.6 0.88 8.5 0.5 2.2 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG IMPDH PF00478.20 gi|386000914|ref|YP_005919213.1| - 0.81 8.5 5.1 0.55 9.0 0.2 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Malic_M PF03949.10 gi|386000915|ref|YP_005919214.1| - 1.6e-70 237.6 3.2 2.2e-70 237.1 2.2 1.2 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|386000915|ref|YP_005919214.1| - 1.9e-31 109.0 0.0 1.2e-28 99.9 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain ThiF PF00899.16 gi|386000915|ref|YP_005919214.1| - 0.023 14.5 2.9 0.033 14.0 0.2 2.6 3 0 0 3 3 3 0 ThiF family ELFV_dehydrog PF00208.16 gi|386000915|ref|YP_005919214.1| - 0.051 13.1 1.3 0.053 13.0 0.2 1.6 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FAD_binding_3 PF01494.14 gi|386000915|ref|YP_005919214.1| - 0.059 12.4 0.1 0.08 11.9 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain TraC PF07820.7 gi|386000915|ref|YP_005919214.1| - 0.076 13.2 0.8 0.17 12.0 0.6 1.6 1 0 0 1 1 1 0 TraC-like protein Shikimate_DH PF01488.15 gi|386000915|ref|YP_005919214.1| - 0.12 12.5 0.5 0.53 10.3 0.1 2.3 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Pyr_redox_3 PF13738.1 gi|386000915|ref|YP_005919214.1| - 0.13 12.3 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Acetyltransf_7 PF13508.1 gi|386000916|ref|YP_005919215.1| - 2e-06 27.8 0.0 3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|386000916|ref|YP_005919215.1| - 3.9e-06 26.7 0.0 5.4e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|386000916|ref|YP_005919215.1| - 0.0001 22.4 0.0 0.00016 21.7 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain NYN PF01936.13 gi|386000917|ref|YP_005919216.1| - 0.06 13.6 0.0 0.075 13.3 0.0 1.1 1 0 0 1 1 1 0 NYN domain Malic_M PF03949.10 gi|386000918|ref|YP_005919217.1| - 9.1e-49 166.2 0.2 1e-48 166.1 0.1 1.0 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain NYN PF01936.13 gi|386000919|ref|YP_005919218.1| - 5e-30 104.7 0.0 6e-30 104.4 0.0 1.0 1 0 0 1 1 1 1 NYN domain FUR PF01475.14 gi|386000920|ref|YP_005919219.1| - 1.7e-28 98.9 0.0 2.2e-28 98.5 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family AhpC-TSA PF00578.16 gi|386000921|ref|YP_005919220.1| - 2.1e-30 104.9 0.0 5.3e-30 103.6 0.0 1.6 2 0 0 2 2 2 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|386000921|ref|YP_005919220.1| - 1.9e-11 43.4 0.7 3.1e-11 42.7 0.5 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|386000921|ref|YP_005919220.1| - 3.9e-11 42.6 0.0 5.8e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Redoxin ABM PF03992.11 gi|386000922|ref|YP_005919221.1| - 0.0068 16.4 0.1 0.0088 16.0 0.0 1.2 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase YcfA PF07927.7 gi|386000922|ref|YP_005919221.1| - 0.086 12.7 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 YcfA-like protein DUF3764 PF12594.3 gi|386000922|ref|YP_005919221.1| - 0.089 12.5 0.2 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3764) Sod_Fe_C PF02777.13 gi|386000923|ref|YP_005919222.1| - 1.9e-38 130.5 0.2 3.4e-38 129.7 0.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|386000923|ref|YP_005919222.1| - 1.8e-30 104.9 0.4 3e-30 104.2 0.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain DLH PF01738.13 gi|386000924|ref|YP_005919223.1| - 2.4e-29 102.2 0.0 2.6e-27 95.5 0.0 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.2 gi|386000924|ref|YP_005919223.1| - 4.1e-13 49.3 0.0 5.2e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|386000924|ref|YP_005919223.1| - 5.5e-11 42.7 0.1 0.00013 21.9 0.1 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|386000924|ref|YP_005919223.1| - 4.4e-10 39.1 0.0 2.3e-06 26.9 0.0 2.1 1 1 1 2 2 2 2 Prolyl oligopeptidase family Chlorophyllase PF07224.6 gi|386000924|ref|YP_005919223.1| - 0.0084 14.9 0.0 0.012 14.4 0.0 1.3 1 0 0 1 1 1 1 Chlorophyllase Abhydrolase_3 PF07859.8 gi|386000924|ref|YP_005919223.1| - 0.014 14.9 0.0 0.1 12.1 0.0 2.0 2 0 0 2 2 2 0 alpha/beta hydrolase fold Chlorophyllase2 PF12740.2 gi|386000924|ref|YP_005919223.1| - 0.023 13.5 0.0 0.035 13.0 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase enzyme Abhydrolase_4 PF08386.5 gi|386000924|ref|YP_005919223.1| - 0.059 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein BAAT_C PF08840.6 gi|386000924|ref|YP_005919223.1| - 0.062 12.9 0.0 1 8.9 0.0 2.2 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF3617 PF12276.3 gi|386000925|ref|YP_005919224.1| - 0.1 12.0 1.1 0.13 11.7 0.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3617) Thymidylat_synt PF00303.14 gi|386000926|ref|YP_005919225.1| - 2.3e-36 125.2 0.0 1.2e-34 119.5 0.0 2.0 1 1 0 1 1 1 1 Thymidylate synthase Hjc PF01870.13 gi|386000927|ref|YP_005919226.1| - 0.028 13.9 0.0 0.074 12.6 0.0 1.6 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Methyltransf_18 PF12847.2 gi|386000928|ref|YP_005919227.1| - 1.1e-08 35.6 0.0 1.6e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386000928|ref|YP_005919227.1| - 3.9e-07 29.7 0.0 5.5e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386000928|ref|YP_005919227.1| - 1e-06 28.7 0.1 2.7e-06 27.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|386000928|ref|YP_005919227.1| - 1.5e-06 27.5 0.0 2.1e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|386000928|ref|YP_005919227.1| - 1e-05 24.8 0.0 1.3e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|386000928|ref|YP_005919227.1| - 8.4e-05 22.9 0.0 0.00014 22.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|386000928|ref|YP_005919227.1| - 9.8e-05 21.7 0.0 0.00014 21.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|386000928|ref|YP_005919227.1| - 0.00011 21.9 0.0 0.00013 21.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|386000928|ref|YP_005919227.1| - 0.00014 21.4 0.0 0.00019 21.0 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|386000928|ref|YP_005919227.1| - 0.00061 20.1 0.0 0.00075 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|386000928|ref|YP_005919227.1| - 0.027 13.5 0.0 0.047 12.7 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.10 gi|386000928|ref|YP_005919227.1| - 0.027 13.8 0.0 0.038 13.3 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DOT1 PF08123.8 gi|386000928|ref|YP_005919227.1| - 0.045 13.0 0.0 0.061 12.6 0.0 1.1 1 0 0 1 1 1 0 Histone methylation protein DOT1 TP_methylase PF00590.15 gi|386000929|ref|YP_005919228.1| - 3.8e-30 105.1 0.4 9.5e-30 103.8 0.3 1.5 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|386000930|ref|YP_005919229.1| - 2.6e-46 158.0 1.3 3e-46 157.8 0.9 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_C PF01890.11 gi|386000931|ref|YP_005919230.1| - 3e-28 98.4 0.2 5.4e-28 97.6 0.1 1.4 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus CbiG_N PF11760.3 gi|386000931|ref|YP_005919230.1| - 6.7e-25 86.6 0.9 1.5e-24 85.5 0.0 2.0 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal TP_methylase PF00590.15 gi|386000932|ref|YP_005919231.1| - 4.8e-64 215.9 5.6 2e-33 115.8 0.3 2.1 2 0 0 2 2 2 2 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.10 gi|386000933|ref|YP_005919232.1| - 1e-58 198.0 2.3 1.2e-58 197.8 1.6 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiD PF01888.12 gi|386000934|ref|YP_005919233.1| - 8.9e-35 119.9 8.0 7.8e-27 93.8 0.6 2.1 1 1 1 2 2 2 2 CbiD TP_methylase PF00590.15 gi|386000935|ref|YP_005919234.1| - 1.9e-26 93.0 0.4 2.8e-26 92.5 0.2 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Ada_Zn_binding PF02805.11 gi|386000936|ref|YP_005919235.1| - 1.4e-06 27.8 0.0 2.5e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Metal binding domain of Ada Auto_anti-p27 PF06677.7 gi|386000937|ref|YP_005919236.1| - 2.1e-12 46.6 0.6 3.2e-12 46.0 0.4 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0147 PF03685.8 gi|386000938|ref|YP_005919237.1| - 2.3e-30 104.2 1.9 2.5e-30 104.1 1.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|386000938|ref|YP_005919237.1| - 0.097 12.7 0.2 0.86 9.7 0.0 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0253) Cdc6_C PF09079.6 gi|386000939|ref|YP_005919238.1| - 3.6e-24 84.2 0.2 1.5e-23 82.3 0.0 2.2 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|386000939|ref|YP_005919238.1| - 5.6e-14 52.4 0.0 1.2e-13 51.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|386000939|ref|YP_005919238.1| - 1.4e-09 38.1 0.4 1.4e-08 34.9 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|386000939|ref|YP_005919238.1| - 5.8e-09 36.2 0.0 1.5e-08 34.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|386000939|ref|YP_005919238.1| - 3.6e-05 23.3 0.1 7.9e-05 22.1 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|386000939|ref|YP_005919238.1| - 3.9e-05 23.4 0.0 7.4e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|386000939|ref|YP_005919238.1| - 0.00011 21.9 0.0 0.0002 21.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DUF2075 PF09848.4 gi|386000939|ref|YP_005919238.1| - 0.0002 20.4 0.0 0.00027 20.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|386000939|ref|YP_005919238.1| - 0.00023 21.9 0.1 0.0021 18.8 0.0 2.3 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|386000939|ref|YP_005919238.1| - 0.00047 19.1 0.0 0.00082 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RuvB_N PF05496.7 gi|386000939|ref|YP_005919238.1| - 0.00066 18.7 0.0 0.024 13.7 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_24 PF13479.1 gi|386000939|ref|YP_005919238.1| - 0.0023 17.5 0.2 0.0048 16.5 0.2 1.5 1 0 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|386000939|ref|YP_005919238.1| - 0.0042 16.5 2.2 0.48 9.8 0.1 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_18 PF13238.1 gi|386000939|ref|YP_005919238.1| - 0.019 15.2 0.0 0.044 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|386000939|ref|YP_005919238.1| - 0.026 13.4 0.0 0.048 12.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.17 gi|386000939|ref|YP_005919238.1| - 0.038 14.1 0.0 0.11 12.6 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_5 PF07728.9 gi|386000939|ref|YP_005919238.1| - 0.044 13.5 0.2 0.38 10.4 0.2 2.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|386000939|ref|YP_005919238.1| - 0.049 12.4 0.0 0.069 11.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain TIP49 PF06068.8 gi|386000939|ref|YP_005919238.1| - 0.057 12.1 0.1 0.21 10.2 0.0 1.8 2 0 0 2 2 2 0 TIP49 C-terminus KAP_NTPase PF07693.9 gi|386000939|ref|YP_005919238.1| - 0.074 12.0 1.8 3.4 6.5 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain Sigma54_activ_2 PF14532.1 gi|386000939|ref|YP_005919238.1| - 0.095 12.7 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|386000939|ref|YP_005919238.1| - 0.13 11.6 0.8 0.37 10.1 0.1 1.9 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|386000939|ref|YP_005919238.1| - 0.14 11.5 0.1 0.14 11.5 0.1 2.1 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_13 PF13166.1 gi|386000939|ref|YP_005919238.1| - 0.2 10.1 0.2 0.36 9.2 0.1 1.4 1 1 1 2 2 2 0 AAA domain PhoH PF02562.11 gi|386000939|ref|YP_005919238.1| - 0.29 10.3 1.5 0.44 9.7 0.2 1.8 2 0 0 2 2 2 0 PhoH-like protein Pyr_redox_2 PF07992.9 gi|386000940|ref|YP_005919239.1| - 1.1e-30 107.0 1.3 1.5e-30 106.5 0.9 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|386000940|ref|YP_005919239.1| - 9.4e-14 51.9 3.9 4.6e-11 43.1 0.0 2.9 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|386000940|ref|YP_005919239.1| - 8.4e-08 31.4 12.1 2.3e-05 23.4 1.1 3.6 2 2 2 4 4 4 3 FAD binding domain HI0933_like PF03486.9 gi|386000940|ref|YP_005919239.1| - 8.8e-07 27.7 3.2 0.00031 19.3 0.3 2.6 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.19 gi|386000940|ref|YP_005919239.1| - 1.7e-06 27.1 5.1 0.0035 16.3 0.1 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|386000940|ref|YP_005919239.1| - 2.1e-05 23.7 0.3 4.5e-05 22.6 0.2 1.5 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|386000940|ref|YP_005919239.1| - 2.2e-05 23.5 9.4 0.0056 15.5 0.3 3.6 4 0 0 4 4 4 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|386000940|ref|YP_005919239.1| - 0.0017 17.5 0.1 0.0017 17.5 0.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|386000940|ref|YP_005919239.1| - 0.0017 17.3 0.4 0.1 11.5 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.1 gi|386000940|ref|YP_005919239.1| - 0.0019 18.1 0.2 0.0019 18.1 0.1 2.5 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|386000940|ref|YP_005919239.1| - 0.0024 17.0 0.4 0.0045 16.0 0.3 1.4 1 0 0 1 1 1 1 FAD binding domain HU-DNA_bdg PF14848.1 gi|386000940|ref|YP_005919239.1| - 0.017 14.8 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 DNA-binding domain NAD_binding_7 PF13241.1 gi|386000940|ref|YP_005919239.1| - 0.25 11.6 1.4 1.6 9.0 0.1 2.4 2 2 0 2 2 2 0 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|386000940|ref|YP_005919239.1| - 1.5 9.3 6.9 4.3 7.7 0.1 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Radical_SAM PF04055.16 gi|386000941|ref|YP_005919240.1| - 3.9e-06 27.1 0.1 1e-05 25.7 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily DUF1677 PF07911.8 gi|386000941|ref|YP_005919240.1| - 2.6 8.3 4.9 1.4 9.1 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1677) Usp PF00582.21 gi|386000942|ref|YP_005919241.1| - 2.7e-41 141.0 0.4 1.9e-20 73.4 0.2 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF1646 PF07854.7 gi|386000943|ref|YP_005919242.1| - 1.9e-123 412.0 27.3 2.2e-123 411.8 18.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Usp PF00582.21 gi|386000944|ref|YP_005919243.1| - 7.5e-44 149.3 2.9 9.9e-23 80.8 0.1 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF1646 PF07854.7 gi|386000945|ref|YP_005919244.1| - 8.3e-122 406.6 29.4 9.2e-122 406.4 20.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Usp PF00582.21 gi|386000946|ref|YP_005919245.1| - 7.5e-44 149.3 2.9 9.9e-23 80.8 0.1 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF1646 PF07854.7 gi|386000947|ref|YP_005919246.1| - 8.3e-122 406.6 29.4 9.2e-122 406.4 20.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Usp PF00582.21 gi|386000948|ref|YP_005919247.1| - 7.5e-44 149.3 2.9 9.9e-23 80.8 0.1 2.0 2 0 0 2 2 2 2 Universal stress protein family ATP-synt_B PF00430.13 gi|386000950|ref|YP_005919249.1| - 0.00047 19.9 18.7 0.0053 16.5 12.9 1.9 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) Phage_min_cap2 PF06152.6 gi|386000950|ref|YP_005919249.1| - 0.00083 18.4 2.9 0.00093 18.2 2.0 1.1 1 0 0 1 1 1 1 Phage minor capsid protein 2 DUF3552 PF12072.3 gi|386000950|ref|YP_005919249.1| - 0.03 13.5 16.8 0.21 10.7 2.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) V-ATPase_G PF03179.10 gi|386000950|ref|YP_005919249.1| - 0.045 14.0 13.4 0.053 13.8 9.3 1.1 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DUF643 PF04867.7 gi|386000950|ref|YP_005919249.1| - 0.065 13.6 0.2 0.077 13.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF643) DUF445 PF04286.7 gi|386000950|ref|YP_005919249.1| - 0.1 12.1 3.8 0.11 12.0 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) CYTH PF01928.16 gi|386000950|ref|YP_005919249.1| - 0.13 11.8 2.5 0.16 11.5 1.7 1.2 1 0 0 1 1 1 0 CYTH domain ArsC PF03960.10 gi|386000950|ref|YP_005919249.1| - 0.14 12.2 2.5 0.69 10.0 1.7 1.9 1 1 0 1 1 1 0 ArsC family Inositol_P PF00459.20 gi|386000950|ref|YP_005919249.1| - 0.28 10.4 2.3 0.32 10.2 1.6 1.1 1 0 0 1 1 1 0 Inositol monophosphatase family HrpE PF06188.7 gi|386000950|ref|YP_005919249.1| - 0.37 10.5 10.6 2.2 7.9 0.9 2.0 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E Lyase_1 PF00206.15 gi|386000950|ref|YP_005919249.1| - 0.45 9.6 4.1 0.49 9.5 2.9 1.1 1 0 0 1 1 1 0 Lyase DUF883 PF05957.8 gi|386000950|ref|YP_005919249.1| - 0.6 10.5 8.4 5.6 7.4 5.7 2.0 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) DivIVA PF05103.8 gi|386000950|ref|YP_005919249.1| - 2.9 7.9 13.2 13 5.7 9.2 1.9 1 1 0 1 1 1 0 DivIVA protein DUF4637 PF15470.1 gi|386000950|ref|YP_005919249.1| - 4 7.0 6.5 2.2 7.8 3.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4637) LUC7 PF03194.10 gi|386000950|ref|YP_005919249.1| - 4.5 6.7 7.3 5.2 6.5 5.0 1.1 1 0 0 1 1 1 0 LUC7 N_terminus V_ATPase_I PF01496.14 gi|386000951|ref|YP_005919250.1| - 5.5e-106 355.2 6.0 7.5e-70 235.7 0.1 2.7 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family vATP-synt_E PF01991.13 gi|386000952|ref|YP_005919251.1| - 3.1e-34 118.0 12.1 3.5e-34 117.8 8.4 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|386000952|ref|YP_005919251.1| - 0.002 17.9 9.5 0.002 17.9 6.6 2.2 2 2 0 2 2 2 1 ATP synthase B/B' CF(0) Ribosomal_L22 PF00237.14 gi|386000952|ref|YP_005919251.1| - 0.016 15.1 1.7 0.032 14.1 1.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L22p/L17e HrpE PF06188.7 gi|386000952|ref|YP_005919251.1| - 0.054 13.2 1.9 0.089 12.5 1.3 1.3 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF4230 PF14014.1 gi|386000952|ref|YP_005919251.1| - 0.077 12.8 3.2 0.14 11.9 2.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4230) vATP-synt_AC39 PF01992.11 gi|386000953|ref|YP_005919252.1| - 6.5e-80 268.7 0.6 7.4e-80 268.5 0.4 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.12 gi|386000954|ref|YP_005919253.1| - 3.3e-20 72.2 1.4 3.8e-20 72.0 1.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.20 gi|386000955|ref|YP_005919254.1| - 3.3e-90 301.2 0.0 5.7e-89 297.2 0.0 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|386000955|ref|YP_005919254.1| - 1.3e-18 67.4 1.4 2.2e-18 66.7 0.9 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|386000955|ref|YP_005919254.1| - 2.5e-14 53.2 1.1 7.2e-14 51.7 0.7 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain PhoQ_Sensor PF08918.5 gi|386000955|ref|YP_005919254.1| - 0.013 14.9 0.2 0.065 12.7 0.0 2.0 1 1 1 2 2 2 0 PhoQ Sensor TrfA PF07042.6 gi|386000955|ref|YP_005919254.1| - 0.021 13.6 0.0 0.037 12.8 0.0 1.3 1 0 0 1 1 1 0 TrfA protein AAA_19 PF13245.1 gi|386000955|ref|YP_005919254.1| - 0.06 13.1 0.0 0.21 11.3 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain ATP-synt_ab PF00006.20 gi|386000956|ref|YP_005919255.1| - 7.7e-58 195.5 0.0 1e-57 195.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|386000956|ref|YP_005919255.1| - 5.3e-17 62.3 0.0 9.9e-17 61.4 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|386000956|ref|YP_005919255.1| - 3.9e-09 36.5 5.5 3.9e-09 36.5 3.8 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|386000956|ref|YP_005919255.1| - 0.024 14.5 2.3 0.071 13.0 1.6 1.8 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_D PF01813.12 gi|386000957|ref|YP_005919256.1| - 5.3e-63 212.1 9.0 6e-63 211.9 6.3 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Filament PF00038.16 gi|386000957|ref|YP_005919256.1| - 0.0069 15.8 4.3 0.016 14.6 0.6 2.0 2 0 0 2 2 2 1 Intermediate filament protein IncA PF04156.9 gi|386000957|ref|YP_005919256.1| - 0.01 15.4 0.8 0.54 9.8 0.0 2.3 2 0 0 2 2 2 0 IncA protein DUF2204 PF09970.4 gi|386000957|ref|YP_005919256.1| - 0.025 14.0 0.6 0.047 13.1 0.4 1.7 1 1 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) Peptidase_A17 PF05380.8 gi|386000957|ref|YP_005919256.1| - 0.054 13.3 0.3 0.11 12.3 0.2 1.6 1 1 0 1 1 1 0 Pao retrotransposon peptidase DUF22 PF01629.11 gi|386000958|ref|YP_005919257.1| - 1.5e-24 85.5 0.1 1.9e-24 85.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF22 DUF61 PF01886.11 gi|386000959|ref|YP_005919258.1| - 2.4e-35 121.2 1.0 2.7e-35 121.1 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Acetyltransf_9 PF13527.1 gi|386000960|ref|YP_005919259.1| - 2.7e-14 53.1 0.0 1.7e-13 50.5 0.0 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|386000960|ref|YP_005919259.1| - 1.3e-10 41.1 0.0 2.3e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|386000960|ref|YP_005919259.1| - 1.8e-06 27.9 0.0 3.6e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|386000960|ref|YP_005919259.1| - 2.5e-05 24.3 0.0 3.9e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PLD_C PF12357.3 gi|386000960|ref|YP_005919259.1| - 0.0094 15.4 0.0 0.048 13.2 0.0 1.9 1 1 1 2 2 2 1 Phospholipase D C terminal TPP_enzyme_C PF02775.16 gi|386000962|ref|YP_005919261.1| - 0.1 12.1 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BPL_N PF09825.4 gi|386000963|ref|YP_005919262.1| - 0.062 12.0 0.0 7.3 5.2 0.0 2.0 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal NikR_C PF08753.6 gi|386000964|ref|YP_005919263.1| - 4.3e-32 109.8 4.8 5.7e-32 109.4 3.3 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|386000964|ref|YP_005919263.1| - 1.2e-06 28.1 0.1 2.9e-06 26.9 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Fibrillarin PF01269.12 gi|386000965|ref|YP_005919264.1| - 5.9e-64 215.1 0.0 1.6e-63 213.6 0.0 1.6 1 1 0 1 1 1 1 Fibrillarin Methyltransf_18 PF12847.2 gi|386000965|ref|YP_005919264.1| - 0.0026 18.3 0.0 0.0044 17.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386000965|ref|YP_005919264.1| - 0.0067 16.4 0.2 0.025 14.5 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|386000965|ref|YP_005919264.1| - 0.084 13.7 0.0 0.16 12.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Peptidase_S24 PF00717.18 gi|386000966|ref|YP_005919265.1| - 0.015 14.9 0.0 0.035 13.7 0.0 1.7 1 0 0 1 1 1 0 Peptidase S24-like NifZ PF04319.8 gi|386000966|ref|YP_005919265.1| - 0.066 12.5 0.1 0.55 9.6 0.1 2.2 2 0 0 2 2 2 0 NifZ domain DNA_pol_E_B PF04042.11 gi|386000967|ref|YP_005919266.1| - 8.3e-11 41.5 0.0 1.3e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|386000967|ref|YP_005919266.1| - 6.5e-08 32.5 0.0 1.2e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|386000967|ref|YP_005919266.1| - 6.6e-08 32.1 0.0 1.2e-07 31.3 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|386000967|ref|YP_005919266.1| - 9.2e-05 22.2 0.3 0.0002 21.1 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4539 PF15072.1 gi|386000967|ref|YP_005919266.1| - 0.027 14.1 0.0 0.66 9.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4539) DUF1538 PF07556.6 gi|386000968|ref|YP_005919267.1| - 9e-68 227.5 27.9 1e-67 227.3 19.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) DUF1538 PF07556.6 gi|386000969|ref|YP_005919268.1| - 2.8e-68 229.1 22.4 3.2e-68 228.9 15.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) Oxidored_q2 PF00420.19 gi|386000969|ref|YP_005919268.1| - 2.9 7.5 13.7 1.7e+02 1.8 9.5 2.8 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L P-II PF00543.17 gi|386000970|ref|YP_005919269.1| - 0.027 14.9 0.2 0.035 14.5 0.1 1.2 1 0 0 1 1 1 0 Nitrogen regulatory protein P-II ApbA_C PF08546.6 gi|386000971|ref|YP_005919270.1| - 2.6e-34 117.8 0.0 3.5e-34 117.4 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|386000971|ref|YP_005919270.1| - 1.9e-18 66.3 0.0 3.2e-18 65.6 0.0 1.4 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|386000971|ref|YP_005919270.1| - 0.0099 16.1 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|386000971|ref|YP_005919270.1| - 0.11 12.9 0.8 0.25 11.7 0.6 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|386000971|ref|YP_005919270.1| - 0.15 10.9 2.1 0.2 10.4 1.5 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase DUF2953 PF11167.3 gi|386000972|ref|YP_005919271.1| - 0.0073 16.1 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) CobT PF06213.7 gi|386000972|ref|YP_005919271.1| - 0.01 14.9 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT KASH PF10541.4 gi|386000972|ref|YP_005919271.1| - 0.38 10.6 11.2 0.68 9.8 6.0 2.3 2 0 0 2 2 2 0 Nuclear envelope localisation domain Spore_YtfJ PF09579.5 gi|386000973|ref|YP_005919272.1| - 3.1e-19 68.6 5.2 3.1e-19 68.6 3.6 2.0 2 0 0 2 2 2 1 Sporulation protein YtfJ (Spore_YtfJ) Gly-zipper_OmpA PF13436.1 gi|386000973|ref|YP_005919272.1| - 7 6.3 7.6 11 5.7 5.3 1.3 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain MetW PF07021.7 gi|386000974|ref|YP_005919273.1| - 0.0034 16.7 0.0 0.0053 16.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.7 gi|386000974|ref|YP_005919273.1| - 0.0099 16.3 0.0 0.02 15.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386000974|ref|YP_005919273.1| - 0.014 15.7 0.0 0.026 14.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.11 gi|386000974|ref|YP_005919273.1| - 0.076 11.3 0.0 0.1 10.8 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase FeoA PF04023.9 gi|386000975|ref|YP_005919274.1| - 1.7e-17 63.1 0.2 1.9e-17 63.0 0.2 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|386000976|ref|YP_005919275.1| - 1.5e-66 222.5 0.1 1.9e-66 222.1 0.1 1.1 1 0 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1 PF01926.18 gi|386000976|ref|YP_005919275.1| - 7.4e-17 61.3 0.0 1.1e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|386000976|ref|YP_005919275.1| - 1e-06 28.0 0.0 1.5e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|386000976|ref|YP_005919275.1| - 0.00075 18.9 0.0 0.059 12.8 0.0 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|386000976|ref|YP_005919275.1| - 0.002 17.2 0.0 0.0029 16.7 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Miro PF08477.8 gi|386000976|ref|YP_005919275.1| - 0.014 15.9 0.0 0.02 15.3 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein Ras PF00071.17 gi|386000976|ref|YP_005919275.1| - 0.014 14.8 0.0 0.023 14.0 0.0 1.4 1 1 0 1 1 1 0 Ras family PduV-EutP PF10662.4 gi|386000976|ref|YP_005919275.1| - 0.058 12.8 0.0 0.11 12.0 0.0 1.6 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Gate PF07670.9 gi|386000977|ref|YP_005919276.1| - 6.7e-44 148.2 14.3 1.3e-28 99.0 3.2 3.0 4 0 0 4 4 4 2 Nucleoside recognition FeoB_C PF07664.7 gi|386000977|ref|YP_005919276.1| - 5.2e-20 70.6 2.8 5.2e-20 70.6 1.9 3.8 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus PMP1_2 PF08114.6 gi|386000977|ref|YP_005919276.1| - 0.46 10.0 4.4 9.8 5.7 0.1 3.1 2 0 0 2 2 2 0 ATPase proteolipid family DUF805 PF05656.9 gi|386000978|ref|YP_005919277.1| - 0.0041 16.9 2.1 0.014 15.2 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF805) Fe_dep_repress PF01325.14 gi|386000979|ref|YP_005919278.1| - 5.9e-22 77.3 0.1 1.4e-21 76.1 0.1 1.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|386000979|ref|YP_005919278.1| - 8.3e-12 44.6 0.0 2.6e-11 43.0 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|386000979|ref|YP_005919278.1| - 2.2e-05 24.0 0.0 4.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|386000979|ref|YP_005919278.1| - 2.8e-05 24.3 0.0 5.8e-05 23.3 0.0 1.5 2 0 0 2 2 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|386000979|ref|YP_005919278.1| - 0.00054 19.6 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|386000979|ref|YP_005919278.1| - 0.0011 18.6 0.0 0.0021 17.7 0.0 1.5 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.11 gi|386000979|ref|YP_005919278.1| - 0.0021 17.5 0.0 0.0048 16.4 0.0 1.6 1 0 0 1 1 1 1 LexA DNA binding domain Rrf2 PF02082.15 gi|386000979|ref|YP_005919278.1| - 0.01 15.9 0.0 0.016 15.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|386000979|ref|YP_005919278.1| - 0.016 14.5 0.0 0.043 13.1 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|386000979|ref|YP_005919278.1| - 0.045 13.3 0.0 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|386000979|ref|YP_005919278.1| - 0.063 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix Peripla_BP_6 PF13458.1 gi|386000981|ref|YP_005919280.1| - 2.7e-49 168.3 0.2 3.1e-49 168.1 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|386000981|ref|YP_005919280.1| - 2.1e-24 85.9 0.0 2.7e-24 85.5 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|386000981|ref|YP_005919280.1| - 1.9e-16 59.7 0.0 8.5e-10 37.9 0.0 2.3 2 1 0 2 2 2 2 Periplasmic binding protein domain Peripla_BP_3 PF13377.1 gi|386000981|ref|YP_005919280.1| - 0.081 12.9 0.2 0.46 10.4 0.1 2.1 2 0 0 2 2 2 0 Periplasmic binding protein-like domain DUF488 PF04343.8 gi|386000982|ref|YP_005919281.1| - 1.9e-31 108.9 0.1 2.2e-31 108.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Apolipoprotein PF01442.13 gi|386000982|ref|YP_005919281.1| - 0.0093 15.5 0.8 0.012 15.1 0.5 1.1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Slu7 PF11708.3 gi|386000982|ref|YP_005919281.1| - 0.069 12.8 0.2 0.08 12.6 0.2 1.1 1 0 0 1 1 1 0 Pre-mRNA splicing Prp18-interacting factor HEAT_2 PF13646.1 gi|386000984|ref|YP_005919283.1| - 2e-86 284.3 12.7 3.5e-20 72.0 0.0 4.0 1 1 4 5 5 5 5 HEAT repeats HEAT_PBS PF03130.11 gi|386000984|ref|YP_005919283.1| - 4e-46 150.8 21.5 1.4e-07 31.2 0.0 7.2 7 0 0 7 7 7 7 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|386000984|ref|YP_005919283.1| - 1.5e-31 105.5 0.1 0.00036 20.3 0.0 7.1 7 0 0 7 7 7 6 HEAT repeat HEAT_EZ PF13513.1 gi|386000984|ref|YP_005919283.1| - 3.6e-24 84.5 10.7 1.7e-05 25.1 0.1 6.5 6 1 1 7 7 7 6 HEAT-like repeat Arm PF00514.18 gi|386000984|ref|YP_005919283.1| - 1.9e-13 49.6 0.2 0.014 15.2 0.0 6.3 1 1 6 7 7 7 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|386000984|ref|YP_005919283.1| - 0.00012 20.6 0.0 0.028 12.7 0.0 2.7 1 1 3 4 4 4 2 Adaptin N terminal region Cnd1 PF12717.2 gi|386000984|ref|YP_005919283.1| - 0.0018 18.1 0.0 7.5 6.3 0.0 4.3 1 1 1 3 3 3 1 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.2 gi|386000984|ref|YP_005919283.1| - 0.1 13.0 0.0 35 4.8 0.0 3.8 3 2 1 4 4 4 0 Vacuolar 14 Fab1-binding region ALF PF03752.8 gi|386000984|ref|YP_005919283.1| - 0.23 11.3 10.4 3.1 7.7 1.2 4.0 5 0 0 5 5 5 0 Short repeats of unknown function CPSase_L_D2 PF02786.12 gi|386000985|ref|YP_005919284.1| - 1.5e-101 338.0 0.6 2.6e-67 226.2 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|386000985|ref|YP_005919284.1| - 1.6e-48 163.3 0.5 6.3e-24 84.1 0.0 3.0 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|386000985|ref|YP_005919284.1| - 4.8e-43 145.8 0.0 1.1e-42 144.7 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|386000985|ref|YP_005919284.1| - 5e-36 124.1 0.1 1.7e-17 63.7 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|386000985|ref|YP_005919284.1| - 5e-26 91.2 0.0 3.6e-11 42.4 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|386000985|ref|YP_005919284.1| - 1.1e-19 70.1 0.3 2.3e-18 65.9 0.1 3.2 3 0 0 3 3 2 1 MGS-like domain ATP-grasp PF02222.17 gi|386000985|ref|YP_005919284.1| - 9e-16 57.6 0.0 2.6e-08 33.3 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|386000985|ref|YP_005919284.1| - 1.8e-15 56.9 0.0 9.5e-08 31.6 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|386000985|ref|YP_005919284.1| - 9.1e-14 51.6 0.2 5.1e-06 26.4 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|386000985|ref|YP_005919284.1| - 0.0017 17.5 0.0 0.045 12.9 0.0 2.7 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|386000985|ref|YP_005919284.1| - 0.032 13.5 0.0 4.3 6.6 0.0 2.8 2 1 0 2 2 2 0 ATP-grasp domain HTH_25 PF13413.1 gi|386000985|ref|YP_005919284.1| - 0.04 13.5 0.0 0.19 11.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|386000985|ref|YP_005919284.1| - 0.076 12.6 0.0 1.2 8.8 0.0 2.8 2 0 0 2 2 2 0 Homeodomain-like domain DUF3071 PF11268.3 gi|386000985|ref|YP_005919284.1| - 0.21 11.3 0.0 0.21 11.3 0.0 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3071) CPSase_sm_chain PF00988.17 gi|386000986|ref|YP_005919285.1| - 7e-47 158.2 0.0 9.8e-47 157.7 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|386000986|ref|YP_005919285.1| - 8.1e-38 129.8 0.0 1.2e-37 129.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|386000986|ref|YP_005919285.1| - 4.2e-09 36.1 0.2 7.8e-07 28.7 0.2 2.3 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|386000986|ref|YP_005919285.1| - 0.058 12.8 0.0 0.093 12.1 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family Saccharop_dh PF03435.13 gi|386000987|ref|YP_005919286.1| - 8.4e-47 159.9 0.0 9.7e-47 159.7 0.0 1.0 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|386000987|ref|YP_005919286.1| - 1.5e-05 25.0 2.4 3.4e-05 23.8 1.6 1.6 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|386000987|ref|YP_005919286.1| - 0.00016 21.7 0.8 0.00025 21.1 0.6 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|386000987|ref|YP_005919286.1| - 0.0014 18.0 0.0 0.0021 17.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GFO_IDH_MocA PF01408.17 gi|386000987|ref|YP_005919286.1| - 0.0043 17.5 0.0 0.0071 16.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold KR PF08659.5 gi|386000987|ref|YP_005919286.1| - 0.014 15.0 0.7 0.027 14.1 0.5 1.4 1 0 0 1 1 1 0 KR domain DapB_N PF01113.15 gi|386000987|ref|YP_005919286.1| - 0.16 11.8 0.4 0.28 11.0 0.3 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ThiF PF00899.16 gi|386000987|ref|YP_005919286.1| - 0.9 9.3 3.3 0.99 9.2 1.5 1.6 2 0 0 2 2 2 0 ThiF family tRNA-synt_2b PF00587.20 gi|386000989|ref|YP_005919288.1| - 2.8e-57 193.0 0.0 4e-57 192.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|386000989|ref|YP_005919288.1| - 1.2e-23 82.8 0.0 3.2e-23 81.4 0.0 1.8 1 0 0 1 1 1 1 Anticodon binding domain zinc_ribbon_2 PF13240.1 gi|386000989|ref|YP_005919288.1| - 0.018 14.4 1.8 0.12 11.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|386000989|ref|YP_005919288.1| - 0.028 14.3 0.5 11 6.0 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|386000989|ref|YP_005919288.1| - 0.12 11.6 1.8 0.49 9.6 1.3 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|386000989|ref|YP_005919288.1| - 0.15 12.4 1.7 2.8 8.4 0.0 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type MHC2-interact PF09307.5 gi|386000990|ref|YP_005919289.1| - 0.075 12.8 0.3 0.15 11.8 0.2 1.5 1 0 0 1 1 1 0 CLIP, MHC2 interacting CTP_transf_1 PF01148.15 gi|386000990|ref|YP_005919289.1| - 2.4 7.7 14.4 0.88 9.1 1.1 2.8 1 1 1 2 2 2 0 Cytidylyltransferase family ADK PF00406.17 gi|386000991|ref|YP_005919290.1| - 3.4e-60 202.2 0.0 4e-60 202.0 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|386000991|ref|YP_005919290.1| - 6.2e-17 60.9 2.2 1.5e-16 59.7 1.5 1.6 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|386000991|ref|YP_005919290.1| - 3.4e-11 44.0 0.0 4.5e-11 43.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|386000991|ref|YP_005919290.1| - 3.6e-07 30.1 0.0 8e-07 29.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|386000991|ref|YP_005919290.1| - 7.3e-05 23.0 0.0 0.00015 22.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|386000991|ref|YP_005919290.1| - 0.0018 18.4 0.0 0.0037 17.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|386000991|ref|YP_005919290.1| - 0.017 14.2 0.1 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.1 gi|386000991|ref|YP_005919290.1| - 0.018 15.0 0.0 0.19 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.7 gi|386000991|ref|YP_005919290.1| - 0.026 13.5 0.0 0.039 12.9 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Thymidylate_kin PF02223.12 gi|386000991|ref|YP_005919290.1| - 0.04 13.2 0.0 0.61 9.4 0.0 2.2 1 1 0 1 1 1 0 Thymidylate kinase Cytidylate_kin2 PF13189.1 gi|386000991|ref|YP_005919290.1| - 0.046 13.6 0.0 0.18 11.6 0.0 1.9 1 1 1 2 2 2 0 Cytidylate kinase-like family AAA_19 PF13245.1 gi|386000991|ref|YP_005919290.1| - 0.051 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain ABC_tran PF00005.22 gi|386000991|ref|YP_005919290.1| - 0.093 13.0 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.1 gi|386000991|ref|YP_005919290.1| - 0.12 11.9 0.1 0.68 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|386000991|ref|YP_005919290.1| - 0.13 12.4 0.0 0.23 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain zf-C2HC5 PF06221.8 gi|386000991|ref|YP_005919290.1| - 0.41 10.4 2.4 8 6.3 2.1 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type AA_kinase PF00696.23 gi|386000992|ref|YP_005919291.1| - 9.6e-31 107.1 2.5 1.4e-30 106.6 1.7 1.2 1 0 0 1 1 1 1 Amino acid kinase family K-cyclin_vir_C PF09080.5 gi|386000992|ref|YP_005919291.1| - 0.091 12.9 2.2 0.17 12.0 1.4 1.5 1 1 0 1 1 1 0 K cyclin, C terminal DHFR_1 PF00186.14 gi|386000992|ref|YP_005919291.1| - 0.17 11.4 0.1 0.39 10.2 0.0 1.6 2 0 0 2 2 2 0 Dihydrofolate reductase HrcA_DNA-bdg PF03444.10 gi|386000993|ref|YP_005919292.1| - 1.2e-26 91.9 0.0 2e-26 91.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|386000993|ref|YP_005919292.1| - 4.9e-13 48.6 1.1 7.8e-07 28.7 0.1 2.9 3 0 0 3 3 3 2 CBS domain Rrf2 PF02082.15 gi|386000993|ref|YP_005919292.1| - 6e-06 26.2 0.0 1.4e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|386000993|ref|YP_005919292.1| - 6.5e-05 22.4 0.0 0.00012 21.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|386000993|ref|YP_005919292.1| - 0.13 12.0 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Radical_SAM PF04055.16 gi|386000994|ref|YP_005919293.1| - 2.7e-21 76.4 0.0 5.5e-21 75.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|386000994|ref|YP_005919293.1| - 1.4e-07 31.7 0.1 2.9e-07 30.7 0.1 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|386000994|ref|YP_005919293.1| - 0.00069 19.7 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1537 PF07005.6 gi|386000994|ref|YP_005919293.1| - 0.0018 18.0 0.9 0.018 14.7 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function, DUF1537 Fer4_14 PF13394.1 gi|386000994|ref|YP_005919293.1| - 0.056 13.4 0.0 0.099 12.6 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain Chorion_S16 PF05836.7 gi|386000994|ref|YP_005919293.1| - 0.096 12.5 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 Chorion protein S16 PRA-CH PF01502.13 gi|386000995|ref|YP_005919294.1| - 2.3e-38 129.6 0.1 2.8e-38 129.4 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Tropomodulin PF03250.9 gi|386000995|ref|YP_005919294.1| - 0.14 11.7 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 Tropomodulin DUF650 PF04894.7 gi|386000996|ref|YP_005919295.1| - 3.3e-80 269.4 0.0 5e-70 236.0 0.0 2.1 2 0 0 2 2 2 2 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|386000996|ref|YP_005919295.1| - 1.3e-35 121.3 0.0 1.9e-35 120.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) CO_deh_flav_C PF03450.12 gi|386000996|ref|YP_005919295.1| - 0.095 12.6 0.3 0.2 11.5 0.2 1.5 1 0 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain HSP20 PF00011.16 gi|386000998|ref|YP_005919297.1| - 4.7e-11 42.4 0.6 2.4e-09 36.9 0.4 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|386000998|ref|YP_005919297.1| - 0.00084 19.8 0.1 0.0013 19.2 0.1 1.2 1 0 0 1 1 1 1 CS domain MarR PF01047.17 gi|386000999|ref|YP_005919298.1| - 0.023 14.4 0.0 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.1 gi|386000999|ref|YP_005919298.1| - 0.055 13.2 0.0 0.067 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Nitroreductase PF00881.19 gi|386001000|ref|YP_005919299.1| - 1.5e-39 135.4 0.0 1.8e-39 135.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|386001000|ref|YP_005919299.1| - 1.9e-06 27.2 0.6 0.14 11.2 0.0 3.3 2 2 1 3 3 3 3 Putative TM nitroreductase SelR PF01641.13 gi|386001001|ref|YP_005919300.1| - 3e-54 181.9 0.0 3.5e-54 181.7 0.0 1.0 1 0 0 1 1 1 1 SelR domain DUF2296 PF10058.4 gi|386001001|ref|YP_005919300.1| - 0.0013 18.4 0.6 0.045 13.5 0.0 2.2 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) Yippee-Mis18 PF03226.9 gi|386001001|ref|YP_005919300.1| - 0.0082 16.1 0.0 0.017 15.1 0.0 1.6 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Zn_Tnp_IS1595 PF12760.2 gi|386001001|ref|YP_005919300.1| - 0.19 11.5 2.2 0.7 9.7 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain HNH_5 PF14279.1 gi|386001001|ref|YP_005919300.1| - 0.23 11.4 0.9 0.35 10.8 0.0 1.7 2 0 0 2 2 2 0 HNH endonuclease DUF2099 PF09872.4 gi|386001002|ref|YP_005919301.1| - 1.9e-75 253.2 0.2 2.2e-75 253.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) GHMP_kinases_N PF00288.21 gi|386001003|ref|YP_005919302.1| - 2e-06 27.7 0.0 4.2e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain AAA_15 PF13175.1 gi|386001004|ref|YP_005919303.1| - 7.6e-21 74.6 3.7 1.8e-11 43.7 0.0 2.5 3 0 0 3 3 3 2 AAA ATPase domain DUF2813 PF11398.3 gi|386001004|ref|YP_005919303.1| - 7.8e-21 74.5 0.1 5.4e-11 42.1 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_21 PF13304.1 gi|386001004|ref|YP_005919303.1| - 3e-19 70.0 3.3 1.1e-17 64.9 2.3 2.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|386001004|ref|YP_005919303.1| - 1.5e-11 45.0 0.7 1.5e-11 45.0 0.5 1.6 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|386001004|ref|YP_005919303.1| - 1e-06 28.1 0.0 4.8e-06 25.9 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|386001004|ref|YP_005919303.1| - 0.0006 19.2 0.0 0.0013 18.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|386001004|ref|YP_005919303.1| - 0.036 14.0 0.0 0.082 12.8 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|386001004|ref|YP_005919303.1| - 0.046 13.1 0.0 0.95 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|386001004|ref|YP_005919303.1| - 0.13 12.5 0.0 0.33 11.2 0.0 1.7 1 0 0 1 1 1 0 ABC transporter UvrD-helicase PF00580.16 gi|386001005|ref|YP_005919304.1| - 3.3e-57 194.1 0.1 1.1e-56 192.5 0.0 1.8 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|386001005|ref|YP_005919304.1| - 1.7e-34 119.8 0.1 4.2e-32 111.9 0.0 3.2 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|386001005|ref|YP_005919304.1| - 2.4e-14 52.8 0.0 5.6e-14 51.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|386001005|ref|YP_005919304.1| - 3.6e-09 36.6 0.0 1.5e-08 34.6 0.0 2.2 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|386001005|ref|YP_005919304.1| - 1.6e-08 34.3 0.0 1.6e-06 27.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|386001005|ref|YP_005919304.1| - 2.3e-06 27.3 0.0 0.6 9.5 0.0 3.4 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|386001005|ref|YP_005919304.1| - 2.7e-05 23.8 0.0 0.00079 19.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|386001005|ref|YP_005919304.1| - 0.00017 21.6 0.8 0.018 15.0 0.0 3.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|386001005|ref|YP_005919304.1| - 0.0031 17.6 0.3 0.58 10.3 0.0 3.1 3 0 0 3 3 2 1 AAA domain SNF2_N PF00176.18 gi|386001005|ref|YP_005919304.1| - 0.0061 15.3 0.0 0.011 14.5 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_14 PF13173.1 gi|386001005|ref|YP_005919304.1| - 0.017 15.0 2.4 2 8.3 0.1 3.7 4 1 0 4 4 4 0 AAA domain Arch_ATPase PF01637.13 gi|386001005|ref|YP_005919304.1| - 0.022 14.4 0.1 0.092 12.4 0.0 2.1 2 0 0 2 2 2 0 Archaeal ATPase Flavi_DEAD PF07652.9 gi|386001005|ref|YP_005919304.1| - 0.071 12.8 0.0 0.62 9.8 0.0 2.1 2 0 0 2 2 2 0 Flavivirus DEAD domain AAA_33 PF13671.1 gi|386001005|ref|YP_005919304.1| - 0.083 12.7 0.0 0.27 11.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|386001005|ref|YP_005919304.1| - 0.16 11.4 0.0 1.9 7.9 0.0 2.4 3 0 0 3 3 3 0 DEAD/DEAH box helicase Takusan PF04822.8 gi|386001005|ref|YP_005919304.1| - 0.62 9.8 3.3 4.3 7.1 0.0 3.0 3 0 0 3 3 3 0 Takusan DMRL_synthase PF00885.14 gi|386001006|ref|YP_005919305.1| - 1.1e-18 67.2 0.1 1.3e-18 67.0 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF2828 PF11443.3 gi|386001006|ref|YP_005919305.1| - 0.012 13.8 0.0 0.015 13.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2828) Ribonuc_red_lgC PF02867.10 gi|386001007|ref|YP_005919306.1| - 6.5e-144 480.4 0.0 1.3e-102 344.1 0.0 2.3 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|386001007|ref|YP_005919306.1| - 4.2e-20 71.3 0.0 8.6e-20 70.3 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain NRDD PF13597.1 gi|386001007|ref|YP_005919306.1| - 0.011 13.8 0.0 0.015 13.3 0.0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase CbiA PF01656.18 gi|386001008|ref|YP_005919307.1| - 5.2e-16 58.6 0.0 5.8e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|386001008|ref|YP_005919307.1| - 0.00034 20.2 0.1 0.00047 19.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain TRC8_N PF13705.1 gi|386001008|ref|YP_005919307.1| - 0.069 11.7 0.0 0.086 11.3 0.0 1.1 1 0 0 1 1 1 0 TRC8 N-terminal domain HGD-D PF06050.8 gi|386001008|ref|YP_005919307.1| - 0.11 11.2 0.0 0.16 10.7 0.0 1.4 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component DUF1884 PF08967.5 gi|386001009|ref|YP_005919308.1| - 0.076 13.0 0.0 0.085 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) AIRS_C PF02769.17 gi|386001010|ref|YP_005919309.1| - 2.6e-21 76.2 0.1 4.4e-21 75.4 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|386001010|ref|YP_005919309.1| - 2.3e-16 59.8 0.9 4.7e-16 58.8 0.6 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AA_kinase PF00696.23 gi|386001011|ref|YP_005919310.1| - 3.3e-49 167.6 0.7 4.6e-49 167.1 0.0 1.6 2 1 0 2 2 2 1 Amino acid kinase family ACT PF01842.20 gi|386001011|ref|YP_005919310.1| - 3e-25 87.2 3.3 7e-12 44.5 0.2 2.9 3 0 0 3 3 3 2 ACT domain ACT_7 PF13840.1 gi|386001011|ref|YP_005919310.1| - 2.3e-23 81.4 2.8 5.2e-12 45.1 0.4 2.5 2 0 0 2 2 2 2 ACT domain LytR_C PF13399.1 gi|386001011|ref|YP_005919310.1| - 9.3e-05 22.7 0.2 0.00052 20.3 0.1 2.1 2 0 0 2 2 2 1 LytR cell envelope-related transcriptional attenuator ACT_6 PF13740.1 gi|386001011|ref|YP_005919310.1| - 0.022 14.4 0.4 4.3 7.1 0.0 2.8 2 0 0 2 2 2 0 ACT domain GTP_EFTU PF00009.22 gi|386001012|ref|YP_005919311.1| - 4.9e-58 195.6 0.0 8.5e-58 194.8 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|386001012|ref|YP_005919311.1| - 3.2e-28 97.7 0.1 1.1e-27 96.0 0.1 2.0 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|386001012|ref|YP_005919311.1| - 3.3e-25 87.7 0.3 1e-24 86.1 0.2 1.9 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|386001012|ref|YP_005919311.1| - 3.9e-23 81.1 0.1 1.4e-22 79.3 0.0 2.0 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|386001012|ref|YP_005919311.1| - 7e-14 51.7 0.4 2.7e-13 49.8 0.3 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|386001012|ref|YP_005919311.1| - 0.00037 20.4 0.0 0.00078 19.3 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|386001012|ref|YP_005919311.1| - 0.024 14.0 0.0 0.053 12.9 0.0 1.5 1 0 0 1 1 1 0 Ras family GTP_EFTU PF00009.22 gi|386001013|ref|YP_005919312.1| - 3.5e-58 196.1 0.0 6e-58 195.3 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|386001013|ref|YP_005919312.1| - 1e-32 112.1 1.4 9.8e-32 109.0 0.3 2.6 2 1 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|386001013|ref|YP_005919312.1| - 2.5e-18 65.9 2.2 5.8e-18 64.7 1.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|386001013|ref|YP_005919312.1| - 2.4e-07 30.7 0.0 8.4e-07 28.9 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|386001013|ref|YP_005919312.1| - 1.1e-06 28.1 0.6 2.8e-06 26.8 0.4 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|386001013|ref|YP_005919312.1| - 0.00027 21.4 0.0 0.016 15.6 0.0 2.8 2 1 0 2 2 2 1 Miro-like protein FeoB_N PF02421.13 gi|386001013|ref|YP_005919312.1| - 0.0047 16.2 0.1 0.11 11.7 0.1 2.6 2 1 0 2 2 2 1 Ferrous iron transport protein B Gtr1_RagA PF04670.7 gi|386001013|ref|YP_005919312.1| - 0.02 14.0 0.0 0.13 11.3 0.0 1.9 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|386001013|ref|YP_005919312.1| - 0.04 13.7 0.0 8.6 6.1 0.0 2.5 1 1 1 2 2 2 0 Dynamin family Ribosomal_S10 PF00338.17 gi|386001014|ref|YP_005919313.1| - 6e-30 102.9 0.0 6.6e-30 102.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Glu-tRNAGln PF02686.10 gi|386001015|ref|YP_005919314.1| - 5e-27 93.5 0.1 6e-27 93.2 0.1 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.16 gi|386001016|ref|YP_005919315.1| - 3.3e-150 500.7 0.0 3.8e-150 500.6 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.10 gi|386001017|ref|YP_005919316.1| - 9.4e-111 369.2 0.0 1.3e-110 368.8 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|386001017|ref|YP_005919316.1| - 9.7e-40 135.6 0.0 1.4e-39 135.1 0.0 1.3 1 0 0 1 1 1 1 GatB domain YqeY PF09424.5 gi|386001017|ref|YP_005919316.1| - 0.015 15.1 0.2 0.034 13.9 0.2 1.6 1 0 0 1 1 1 0 Yqey-like protein AMP-binding_C_2 PF14535.1 gi|386001019|ref|YP_005919318.1| - 2.6e-33 113.9 0.2 5.3e-33 112.9 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|386001019|ref|YP_005919318.1| - 3.1e-20 71.9 0.6 3.1e-19 68.6 0.4 2.0 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|386001019|ref|YP_005919318.1| - 2.8e-05 22.9 0.0 0.018 13.7 0.0 2.2 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|386001019|ref|YP_005919318.1| - 0.036 12.6 0.0 2.5 6.4 0.0 2.1 2 0 0 2 2 2 0 GH3 auxin-responsive promoter ACT PF01842.20 gi|386001020|ref|YP_005919319.1| - 1.9e-16 59.1 0.1 9e-09 34.6 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|386001020|ref|YP_005919319.1| - 1.2e-06 28.7 0.1 0.017 15.4 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|386001020|ref|YP_005919319.1| - 1.4e-06 27.7 0.1 0.0028 17.1 0.0 2.8 2 1 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|386001020|ref|YP_005919319.1| - 0.078 12.6 0.0 0.26 11.0 0.0 1.8 2 0 0 2 2 2 0 ACT domain P-II PF00543.17 gi|386001020|ref|YP_005919319.1| - 0.1 13.0 0.2 16 6.0 0.0 2.3 2 0 0 2 2 2 0 Nitrogen regulatory protein P-II PKD PF00801.15 gi|386001023|ref|YP_005919322.1| - 5e-44 147.8 0.3 1.2e-11 44.2 0.0 4.7 4 0 0 4 4 4 4 PKD domain Transglut_core PF01841.14 gi|386001023|ref|YP_005919322.1| - 4.2e-06 26.9 0.0 1.1e-05 25.5 0.0 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4625 PF15418.1 gi|386001023|ref|YP_005919322.1| - 0.009 16.1 0.3 3.8 7.6 0.0 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF4625) REJ PF02010.10 gi|386001023|ref|YP_005919322.1| - 0.016 13.5 4.0 8.2 4.6 0.0 4.3 2 1 2 5 5 5 0 REJ domain ChitinaseA_N PF08329.5 gi|386001023|ref|YP_005919322.1| - 0.021 14.6 1.1 0.45 10.2 0.0 2.9 3 0 0 3 3 3 0 Chitinase A, N-terminal domain DUF553 PF04473.7 gi|386001023|ref|YP_005919322.1| - 0.021 14.1 0.1 0.19 11.0 0.1 2.1 1 1 0 1 1 1 0 Transglutaminase-like domain UPF0020 PF01170.13 gi|386001025|ref|YP_005919324.1| - 8.3e-33 113.4 0.0 1.2e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|386001025|ref|YP_005919324.1| - 8.3e-13 48.4 1.1 3.8e-12 46.2 0.1 2.0 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|386001025|ref|YP_005919324.1| - 2.6e-09 37.0 0.0 4.7e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_11 PF08241.7 gi|386001025|ref|YP_005919324.1| - 0.00064 20.1 0.0 0.0022 18.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|386001025|ref|YP_005919324.1| - 0.0021 17.5 0.0 0.0052 16.2 0.0 1.6 2 0 0 2 2 2 1 DNA methylase Methyltransf_31 PF13847.1 gi|386001025|ref|YP_005919324.1| - 0.0029 17.2 0.0 0.0045 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|386001025|ref|YP_005919324.1| - 0.0088 15.4 0.0 0.074 12.4 0.0 2.0 1 1 1 2 2 2 1 Conserved hypothetical protein 95 N6_Mtase PF02384.11 gi|386001025|ref|YP_005919324.1| - 0.18 10.8 0.0 0.28 10.2 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase APH PF01636.18 gi|386001026|ref|YP_005919325.1| - 3.6e-07 30.1 0.0 5.5e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Phosphotransferase enzyme family AdoHcyase PF05221.12 gi|386001027|ref|YP_005919326.1| - 3.2e-64 216.4 0.0 3.6e-64 216.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|386001027|ref|YP_005919326.1| - 7.4e-51 172.2 0.4 1.6e-50 171.0 0.3 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|386001027|ref|YP_005919326.1| - 2.5e-08 33.2 0.2 5.9e-08 32.0 0.1 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|386001027|ref|YP_005919326.1| - 9.8e-07 28.2 0.0 2.4e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|386001027|ref|YP_005919326.1| - 0.0052 16.7 0.0 0.019 14.9 0.0 2.0 1 0 0 1 1 1 1 TrkA-N domain Oxidored_nitro PF00148.14 gi|386001027|ref|YP_005919326.1| - 0.04 12.5 0.3 5.9 5.4 0.0 2.2 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase AlaDh_PNT_C PF01262.16 gi|386001027|ref|YP_005919326.1| - 0.049 13.1 1.5 0.12 11.9 0.3 2.1 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.9 gi|386001027|ref|YP_005919326.1| - 0.078 12.8 0.3 0.18 11.6 0.1 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lactamase_B_2 PF12706.2 gi|386001028|ref|YP_005919327.1| - 5.9e-28 97.7 0.0 7.3e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|386001028|ref|YP_005919327.1| - 6.4e-14 52.0 0.2 6.5e-13 48.7 0.0 2.1 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|386001028|ref|YP_005919327.1| - 4.4e-06 26.4 0.0 7.2e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FmdE PF02663.9 gi|386001029|ref|YP_005919328.1| - 5.5e-40 136.2 0.0 6.7e-40 136.0 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|386001029|ref|YP_005919328.1| - 9.9e-05 22.0 7.4 0.00015 21.4 2.1 2.3 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger Zn-ribbon_8 PF09723.5 gi|386001029|ref|YP_005919328.1| - 0.0032 17.3 1.6 0.0092 15.9 1.1 1.8 1 0 0 1 1 1 1 Zinc ribbon domain LIM PF00412.17 gi|386001029|ref|YP_005919328.1| - 0.016 15.2 0.4 0.036 14.1 0.3 1.6 1 0 0 1 1 1 0 LIM domain FYVE PF01363.16 gi|386001029|ref|YP_005919328.1| - 0.073 12.9 0.7 0.18 11.7 0.5 1.7 1 0 0 1 1 1 0 FYVE zinc finger L51_S25_CI-B8 PF05047.11 gi|386001029|ref|YP_005919328.1| - 0.081 12.6 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain TF_Zn_Ribbon PF08271.7 gi|386001029|ref|YP_005919328.1| - 0.1 11.9 0.9 0.23 10.7 0.6 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding XPA_N PF01286.13 gi|386001029|ref|YP_005919328.1| - 0.21 11.2 3.3 1 9.1 0.2 2.4 2 0 0 2 2 2 0 XPA protein N-terminal DUF3467 PF11950.3 gi|386001030|ref|YP_005919329.1| - 1.9e-15 56.6 0.0 2.3e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) LolA PF03548.10 gi|386001030|ref|YP_005919329.1| - 0.00011 21.8 0.0 0.00013 21.6 0.0 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA TPR_11 PF13414.1 gi|386001031|ref|YP_005919330.1| - 7.1e-33 112.0 2.0 4.9e-16 58.1 0.1 3.0 1 1 2 3 3 3 3 TPR repeat TPR_1 PF00515.23 gi|386001031|ref|YP_005919330.1| - 5.7e-24 82.6 0.0 1e-10 40.7 0.1 4.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386001031|ref|YP_005919330.1| - 1.6e-22 77.5 0.1 1.2e-08 34.1 0.2 4.1 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001031|ref|YP_005919330.1| - 8.9e-22 77.2 0.4 1.6e-14 54.0 0.2 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001031|ref|YP_005919330.1| - 6.5e-20 70.8 1.0 1.5e-07 31.2 0.1 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001031|ref|YP_005919330.1| - 3e-18 65.9 0.2 2.4e-09 37.3 0.0 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001031|ref|YP_005919330.1| - 8.3e-16 57.0 4.9 0.00029 21.2 0.6 4.2 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386001031|ref|YP_005919330.1| - 1.1e-15 57.1 2.9 2.9e-08 33.4 0.3 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001031|ref|YP_005919330.1| - 6.4e-12 44.6 0.3 4.2e-08 32.7 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001031|ref|YP_005919330.1| - 2e-11 42.7 0.3 0.019 14.7 0.0 4.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386001031|ref|YP_005919330.1| - 3.9e-10 38.7 0.0 0.0009 18.8 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|386001031|ref|YP_005919330.1| - 1.7e-09 37.6 0.0 3.8e-06 26.9 0.0 2.0 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|386001031|ref|YP_005919330.1| - 2.2e-09 36.9 7.1 0.0026 17.6 0.2 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386001031|ref|YP_005919330.1| - 2.4e-08 33.8 0.1 0.088 13.3 0.0 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|386001031|ref|YP_005919330.1| - 3.4e-07 30.0 4.8 0.02 15.2 0.2 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat BTAD PF03704.12 gi|386001031|ref|YP_005919330.1| - 9.2e-06 26.0 1.7 0.011 16.0 0.4 2.6 1 1 1 3 3 3 2 Bacterial transcriptional activator domain PPR PF01535.15 gi|386001031|ref|YP_005919330.1| - 0.00021 21.0 1.6 16 5.7 0.0 4.2 4 0 0 4 4 4 0 PPR repeat Fis1_TPR_C PF14853.1 gi|386001031|ref|YP_005919330.1| - 0.0007 19.4 0.0 0.79 9.6 0.0 3.0 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.1 gi|386001031|ref|YP_005919330.1| - 0.0017 17.4 0.2 0.0054 15.8 0.1 1.7 1 1 1 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|386001031|ref|YP_005919330.1| - 0.0024 16.7 0.0 0.073 11.8 0.0 2.0 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_5 PF12688.2 gi|386001031|ref|YP_005919330.1| - 0.0044 17.0 0.4 0.019 14.9 0.1 2.1 1 1 0 1 1 1 1 Tetratrico peptide repeat DUF3856 PF12968.2 gi|386001031|ref|YP_005919330.1| - 0.0065 16.3 0.5 0.38 10.5 0.0 2.7 2 1 1 3 3 3 1 Domain of Unknown Function (DUF3856) Coatomer_E PF04733.9 gi|386001031|ref|YP_005919330.1| - 0.012 14.8 0.0 0.51 9.4 0.0 2.0 1 1 0 2 2 2 0 Coatomer epsilon subunit MIT PF04212.13 gi|386001031|ref|YP_005919330.1| - 0.013 15.3 0.4 3.6 7.5 0.1 3.3 4 0 0 4 4 3 0 MIT (microtubule interacting and transport) domain Alkyl_sulf_dimr PF14863.1 gi|386001031|ref|YP_005919330.1| - 0.034 14.3 0.0 0.68 10.1 0.0 2.1 1 1 1 2 2 2 0 Alkyl sulfatase dimerisation TPR_20 PF14561.1 gi|386001031|ref|YP_005919330.1| - 0.07 13.2 0.5 10 6.2 0.0 2.9 1 1 2 3 3 3 0 Tetratricopeptide repeat AsnC_trans_reg PF01037.16 gi|386001032|ref|YP_005919331.1| - 7.6e-10 38.3 0.1 8e-10 38.2 0.1 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|386001032|ref|YP_005919331.1| - 0.052 13.2 0.1 0.052 13.2 0.0 1.1 1 0 0 1 1 1 0 GYD domain MutS_V PF00488.16 gi|386001033|ref|YP_005919332.1| - 7.9e-98 326.5 0.0 1.1e-97 326.1 0.0 1.2 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|386001033|ref|YP_005919332.1| - 4e-49 167.1 0.1 8.1e-49 166.1 0.1 1.5 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|386001033|ref|YP_005919332.1| - 6.6e-42 142.1 0.0 1.4e-41 141.0 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|386001033|ref|YP_005919332.1| - 3e-30 104.2 0.0 6.2e-30 103.2 0.0 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|386001033|ref|YP_005919332.1| - 1.5e-18 67.2 0.0 2.8e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain II AAA_14 PF13173.1 gi|386001033|ref|YP_005919332.1| - 0.0017 18.2 0.0 0.0083 16.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|386001033|ref|YP_005919332.1| - 0.025 14.1 0.0 0.053 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|386001033|ref|YP_005919332.1| - 0.091 13.0 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain DNA_mis_repair PF01119.14 gi|386001034|ref|YP_005919333.1| - 8.2e-39 131.7 0.0 1.2e-38 131.1 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.6 gi|386001034|ref|YP_005919333.1| - 4.7e-37 126.7 0.0 8.5e-37 125.9 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c PF02518.21 gi|386001034|ref|YP_005919333.1| - 6.5e-12 45.1 0.2 1.4e-11 44.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|386001034|ref|YP_005919333.1| - 2.4e-10 40.1 0.0 4.3e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FrhB_FdhB_C PF04432.8 gi|386001035|ref|YP_005919334.1| - 4e-30 104.3 0.0 7.9e-30 103.3 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|386001035|ref|YP_005919334.1| - 2e-19 69.2 0.0 4.7e-19 68.0 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|386001035|ref|YP_005919334.1| - 4.2e-10 39.4 6.6 4.2e-10 39.4 4.6 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386001035|ref|YP_005919334.1| - 1.6e-09 37.9 3.8 1.6e-09 37.9 2.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386001035|ref|YP_005919334.1| - 4.8e-09 36.3 17.7 1.3e-08 34.9 4.1 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386001035|ref|YP_005919334.1| - 4.2e-08 33.4 21.0 7.5e-07 29.4 7.3 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386001035|ref|YP_005919334.1| - 1.1e-07 32.1 8.8 0.0018 18.6 0.6 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386001035|ref|YP_005919334.1| - 1.6e-07 31.0 24.2 1.5e-06 27.8 8.8 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386001035|ref|YP_005919334.1| - 2.6e-07 29.9 19.2 0.00038 19.9 2.8 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|386001035|ref|YP_005919334.1| - 2.3e-06 27.1 20.1 0.00051 19.8 3.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|386001035|ref|YP_005919334.1| - 1.3e-05 25.5 11.1 0.0047 17.2 0.8 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|386001035|ref|YP_005919334.1| - 3.7e-05 23.3 19.5 0.00024 20.8 1.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386001035|ref|YP_005919334.1| - 4.4e-05 24.1 4.6 0.13 13.0 0.1 2.8 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|386001035|ref|YP_005919334.1| - 6.7e-05 22.6 9.9 0.019 14.8 0.5 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386001035|ref|YP_005919334.1| - 0.00034 20.9 20.3 0.018 15.5 2.5 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|386001035|ref|YP_005919334.1| - 0.00066 19.8 19.7 0.024 14.9 1.2 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386001035|ref|YP_005919334.1| - 0.00083 19.8 9.4 0.059 13.9 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain c-SKI_SMAD_bind PF08782.5 gi|386001035|ref|YP_005919334.1| - 0.61 10.2 5.1 2.3 8.4 0.1 2.4 2 0 0 2 2 2 0 c-SKI Smad4 binding domain Molybdopterin PF00384.17 gi|386001036|ref|YP_005919335.1| - 6.5e-92 308.5 0.0 8.1e-92 308.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|386001036|ref|YP_005919335.1| - 4.2e-34 116.6 0.0 9.3e-34 115.5 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|386001036|ref|YP_005919335.1| - 5.6e-22 77.3 0.2 1e-21 76.4 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain AIRS_C PF02769.17 gi|386001037|ref|YP_005919336.1| - 2.1e-15 57.0 3.1 4.4e-15 56.0 2.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|386001037|ref|YP_005919336.1| - 9e-11 41.8 0.1 2.1e-10 40.6 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TFIIE_alpha PF02002.12 gi|386001038|ref|YP_005919337.1| - 6.9e-21 73.7 0.7 9.9e-21 73.2 0.5 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.7 gi|386001038|ref|YP_005919337.1| - 0.00028 20.1 0.9 0.00067 18.9 0.7 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding FUR PF01475.14 gi|386001038|ref|YP_005919337.1| - 0.0069 16.3 0.1 0.071 13.0 0.0 2.1 2 0 0 2 2 2 1 Ferric uptake regulator family HTH_9 PF08221.6 gi|386001038|ref|YP_005919337.1| - 0.017 14.9 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain RepL PF05732.6 gi|386001038|ref|YP_005919337.1| - 0.028 13.6 0.0 0.046 12.9 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_IclR PF09339.5 gi|386001038|ref|YP_005919337.1| - 0.055 13.0 0.1 0.27 10.8 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|386001038|ref|YP_005919337.1| - 0.063 13.0 0.6 0.2 11.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|386001038|ref|YP_005919337.1| - 0.12 12.5 0.1 0.42 10.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_IS1 PF12759.2 gi|386001038|ref|YP_005919337.1| - 0.13 11.7 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 InsA C-terminal domain DUF2296 PF10058.4 gi|386001038|ref|YP_005919337.1| - 0.17 11.6 0.6 0.39 10.4 0.4 1.6 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) TrmB PF01978.14 gi|386001039|ref|YP_005919338.1| - 0.072 12.7 0.0 0.2 11.4 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF2551 PF10826.3 gi|386001040|ref|YP_005919339.1| - 8.7e-25 86.4 0.2 1.1e-24 86.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.11 gi|386001040|ref|YP_005919339.1| - 0.02 14.9 0.0 0.027 14.5 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor DUF1758 PF05585.7 gi|386001040|ref|YP_005919339.1| - 0.021 14.3 0.1 0.026 14.0 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase (DUF1758) Mrr_cat PF04471.7 gi|386001041|ref|YP_005919340.1| - 2.9e-11 43.1 0.0 4.1e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease BRCT PF00533.21 gi|386001041|ref|YP_005919340.1| - 0.067 13.3 0.0 0.097 12.8 0.0 1.4 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain TPR_1 PF00515.23 gi|386001042|ref|YP_005919341.1| - 5.9e-56 183.9 8.4 1.3e-09 37.2 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386001042|ref|YP_005919341.1| - 1.3e-46 152.8 20.3 7.3e-07 28.6 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386001042|ref|YP_005919341.1| - 3.6e-46 154.6 12.8 1e-13 50.7 0.5 4.1 4 0 0 4 4 4 4 TPR repeat TPR_8 PF13181.1 gi|386001042|ref|YP_005919341.1| - 1.3e-36 121.6 0.2 1.9e-06 27.2 0.1 7.0 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001042|ref|YP_005919341.1| - 2e-35 120.6 47.1 1.1e-11 45.0 4.4 4.3 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001042|ref|YP_005919341.1| - 5.1e-33 112.8 14.0 1.7e-09 37.5 0.1 4.5 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001042|ref|YP_005919341.1| - 7.9e-33 109.9 3.7 0.00033 20.6 0.0 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001042|ref|YP_005919341.1| - 1e-23 81.6 24.5 3.9e-05 23.8 0.9 7.1 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386001042|ref|YP_005919341.1| - 1.9e-22 78.8 17.5 2.8e-07 30.2 2.4 5.1 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001042|ref|YP_005919341.1| - 6.8e-20 71.1 16.5 1.2e-07 31.9 0.6 4.1 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001042|ref|YP_005919341.1| - 9.9e-17 59.3 8.3 0.002 17.8 0.1 6.5 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386001042|ref|YP_005919341.1| - 9.2e-13 47.7 10.7 0.0085 16.4 0.3 6.9 7 0 0 7 7 7 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|386001042|ref|YP_005919341.1| - 2.4e-10 40.3 1.2 0.0084 16.2 0.1 4.0 1 1 4 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|386001042|ref|YP_005919341.1| - 2.3e-09 37.2 10.1 0.0073 16.1 0.1 6.2 2 2 3 5 5 5 2 Domain of Unknown Function (DUF3856) TPR_4 PF07721.9 gi|386001042|ref|YP_005919341.1| - 1.2e-07 31.4 24.8 0.52 10.8 0.6 7.0 7 0 0 7 7 7 2 Tetratricopeptide repeat BTAD PF03704.12 gi|386001042|ref|YP_005919341.1| - 8.6e-07 29.3 14.2 0.2 11.9 0.7 3.9 2 1 1 4 4 4 4 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|386001042|ref|YP_005919341.1| - 1.2e-06 28.5 0.5 0.00021 21.2 0.0 3.1 2 1 1 3 3 3 1 Tetratrico peptide repeat TPR_10 PF13374.1 gi|386001042|ref|YP_005919341.1| - 2.8e-06 27.0 23.9 0.4 10.6 0.1 6.6 7 0 0 7 7 6 2 Tetratricopeptide repeat MIT PF04212.13 gi|386001042|ref|YP_005919341.1| - 6.7e-06 25.9 16.6 0.026 14.3 0.0 6.2 4 3 1 5 5 5 2 MIT (microtubule interacting and transport) domain TPR_15 PF13429.1 gi|386001042|ref|YP_005919341.1| - 5.7e-05 22.3 3.2 0.0021 17.1 0.8 3.6 1 1 2 3 3 3 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|386001042|ref|YP_005919341.1| - 9.4e-05 21.3 0.1 3.6 6.2 0.0 3.6 3 1 1 4 4 4 1 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|386001042|ref|YP_005919341.1| - 0.00035 20.3 5.3 4.7 7.1 0.1 4.8 4 1 1 5 5 5 1 Fis1 C-terminal tetratricopeptide repeat TPR_3 PF07720.7 gi|386001042|ref|YP_005919341.1| - 0.00094 18.9 4.8 1.8 8.4 0.0 4.0 4 0 0 4 4 4 1 Tetratricopeptide repeat FAT PF02259.18 gi|386001042|ref|YP_005919341.1| - 0.0054 15.7 0.0 0.2 10.5 0.0 2.3 1 1 0 1 1 1 1 FAT domain SHNi-TPR PF10516.4 gi|386001042|ref|YP_005919341.1| - 0.0071 15.5 4.4 1.1 8.5 0.0 3.3 4 0 0 4 4 3 2 SHNi-TPR TPR_20 PF14561.1 gi|386001042|ref|YP_005919341.1| - 0.097 12.7 4.0 0.28 11.3 0.1 3.2 2 1 1 3 3 2 0 Tetratricopeptide repeat PPR PF01535.15 gi|386001042|ref|YP_005919341.1| - 0.12 12.3 6.1 33 4.7 0.0 5.1 6 0 0 6 6 5 0 PPR repeat SNAP PF14938.1 gi|386001042|ref|YP_005919341.1| - 0.3 10.1 1.5 8.1 5.5 0.0 3.0 2 2 0 2 2 2 0 Soluble NSF attachment protein, SNAP LTD PF00932.14 gi|386001043|ref|YP_005919342.1| - 5.3e-10 39.3 0.8 1.3e-09 38.0 0.1 1.9 2 0 0 2 2 2 1 Lamin Tail Domain SNase PF00565.12 gi|386001043|ref|YP_005919342.1| - 4.9e-05 23.5 0.0 7.4e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue TPR_1 PF00515.23 gi|386001044|ref|YP_005919343.1| - 1.5e-58 192.1 8.6 7.4e-12 44.3 0.0 7.2 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386001044|ref|YP_005919343.1| - 8e-58 192.0 17.5 4e-20 71.2 0.2 4.5 2 2 3 5 5 5 5 TPR repeat TPR_16 PF13432.1 gi|386001044|ref|YP_005919343.1| - 1.7e-48 162.3 41.0 1.1e-12 48.2 0.3 5.0 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386001044|ref|YP_005919343.1| - 8.7e-47 153.3 15.3 8.7e-09 34.6 0.1 7.0 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001044|ref|YP_005919343.1| - 4.2e-40 132.6 11.9 2.1e-09 36.8 0.0 7.3 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386001044|ref|YP_005919343.1| - 1e-30 103.1 11.1 1.7e-06 27.3 0.1 6.6 4 3 3 7 7 6 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001044|ref|YP_005919343.1| - 1.2e-30 103.2 21.4 9.2e-06 25.8 0.1 6.3 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386001044|ref|YP_005919343.1| - 4.6e-30 103.2 18.4 4.2e-12 45.7 1.3 4.4 2 2 1 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001044|ref|YP_005919343.1| - 2.3e-27 94.7 12.0 1.1e-09 38.0 0.0 4.8 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001044|ref|YP_005919343.1| - 9.9e-25 86.6 10.1 2.9e-08 33.9 0.3 3.3 2 1 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001044|ref|YP_005919343.1| - 1.5e-22 77.4 11.9 0.00038 20.0 0.0 6.3 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_4 PF07721.9 gi|386001044|ref|YP_005919343.1| - 1.3e-14 53.0 9.7 0.24 11.9 0.2 6.8 6 0 0 6 6 6 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|386001044|ref|YP_005919343.1| - 1.5e-13 50.6 0.1 3.1e-06 27.2 0.0 2.7 3 0 0 3 3 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|386001044|ref|YP_005919343.1| - 1.2e-11 44.1 19.5 0.092 12.7 0.1 6.6 6 0 0 6 6 6 4 Tetratricopeptide repeat BTAD PF03704.12 gi|386001044|ref|YP_005919343.1| - 2.7e-11 43.9 12.4 0.00069 19.9 0.7 4.3 1 1 2 4 4 4 3 Bacterial transcriptional activator domain TPR_15 PF13429.1 gi|386001044|ref|YP_005919343.1| - 4.9e-10 38.9 4.2 4e-05 22.8 0.6 3.0 1 1 1 2 2 2 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|386001044|ref|YP_005919343.1| - 2.5e-09 37.0 4.9 0.39 10.5 0.1 5.3 1 1 3 4 4 4 4 Domain of Unknown Function (DUF3856) TPR_6 PF13174.1 gi|386001044|ref|YP_005919343.1| - 2.7e-06 27.4 17.2 0.3 11.6 0.1 6.3 7 0 0 7 7 6 2 Tetratricopeptide repeat PPR PF01535.15 gi|386001044|ref|YP_005919343.1| - 3.2e-06 26.7 2.4 12 6.1 0.0 5.8 6 0 0 6 6 6 0 PPR repeat MIT PF04212.13 gi|386001044|ref|YP_005919343.1| - 3.6e-06 26.7 14.3 0.2 11.5 0.1 5.4 5 0 0 5 5 5 3 MIT (microtubule interacting and transport) domain TPR_3 PF07720.7 gi|386001044|ref|YP_005919343.1| - 3.8e-06 26.5 1.4 0.96 9.3 0.0 4.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|386001044|ref|YP_005919343.1| - 4.2e-06 26.7 0.8 5.7 7.1 0.0 4.5 1 1 2 4 4 4 0 Tetratricopeptide repeat NARP1 PF12569.3 gi|386001044|ref|YP_005919343.1| - 5.4e-06 25.4 0.2 0.06 12.0 0.0 3.2 1 1 3 4 4 4 3 NMDA receptor-regulated protein 1 Coatomer_E PF04733.9 gi|386001044|ref|YP_005919343.1| - 0.00017 20.8 0.0 0.82 8.8 0.0 2.9 1 1 2 3 3 3 3 Coatomer epsilon subunit TPR_21 PF09976.4 gi|386001044|ref|YP_005919343.1| - 0.00038 20.4 6.4 0.45 10.4 0.1 4.0 3 1 1 4 4 4 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|386001044|ref|YP_005919343.1| - 0.00044 20.0 4.7 3.3 7.6 0.0 4.9 6 0 0 6 6 5 2 Fis1 C-terminal tetratricopeptide repeat SNAP PF14938.1 gi|386001044|ref|YP_005919343.1| - 0.0011 18.2 0.4 0.1 11.7 0.0 2.9 2 1 0 3 3 3 1 Soluble NSF attachment protein, SNAP TPR_5 PF12688.2 gi|386001044|ref|YP_005919343.1| - 0.0037 17.2 4.5 0.11 12.5 0.3 3.6 1 1 3 4 4 4 2 Tetratrico peptide repeat FAT PF02259.18 gi|386001044|ref|YP_005919343.1| - 0.0041 16.1 0.7 4.3 6.2 0.0 3.7 2 1 1 3 3 3 1 FAT domain RPN7 PF10602.4 gi|386001044|ref|YP_005919343.1| - 0.079 12.3 1.3 4.5 6.6 0.0 3.6 5 0 0 5 5 4 0 26S proteasome subunit RPN7 PPTA PF01239.17 gi|386001044|ref|YP_005919343.1| - 0.12 11.8 0.6 69 3.0 0.0 4.0 4 0 0 4 4 4 0 Protein prenyltransferase alpha subunit repeat DUF1220 PF06758.8 gi|386001048|ref|YP_005919347.1| - 0.007 16.1 0.0 25 4.7 0.0 4.1 4 0 0 4 4 4 2 Repeat of unknown function (DUF1220) EB1_binding PF05937.6 gi|386001048|ref|YP_005919347.1| - 0.1 12.9 20.9 9.1 6.6 1.1 4.4 4 0 0 4 4 4 0 EB-1 Binding Domain SusE PF14292.1 gi|386001048|ref|YP_005919347.1| - 0.21 11.4 13.4 16 5.3 0.0 6.6 7 0 0 7 7 7 0 SusE outer membrane protein FAD_binding_6 PF00970.19 gi|386001048|ref|YP_005919347.1| - 0.22 11.6 0.0 39 4.4 0.0 3.6 4 0 0 4 4 4 0 Oxidoreductase FAD-binding domain CBM_20 PF00686.14 gi|386001049|ref|YP_005919348.1| - 4.6e-05 22.9 0.2 1.9 8.1 0.0 3.4 3 0 0 3 3 3 2 Starch binding domain Y_Y_Y PF07495.8 gi|386001049|ref|YP_005919348.1| - 0.0032 17.1 0.0 0.096 12.4 0.0 2.8 3 0 0 3 3 3 1 Y_Y_Y domain DUF2909 PF11137.3 gi|386001049|ref|YP_005919348.1| - 0.11 12.2 0.2 0.19 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2909) TOH_N PF12549.3 gi|386001049|ref|YP_005919348.1| - 0.16 11.5 7.6 6.7 6.4 0.3 3.7 3 0 0 3 3 3 0 Tyrosine hydroxylase N terminal PKD PF00801.15 gi|386001049|ref|YP_005919348.1| - 0.23 11.2 11.6 0.22 11.2 1.4 3.1 3 0 0 3 3 3 0 PKD domain Imm10 PF15562.1 gi|386001049|ref|YP_005919348.1| - 6.8 6.5 10.9 0.49 10.1 0.5 3.0 3 0 0 3 3 3 0 Immunity protein 10 Big_3_4 PF13754.1 gi|386001049|ref|YP_005919348.1| - 9.9 6.5 22.3 4.6 7.6 1.8 4.4 5 0 0 5 5 5 0 Bacterial Ig-like domain (group 3) Fae PF08714.6 gi|386001050|ref|YP_005919349.1| - 1.1e-68 230.0 1.0 1.2e-68 229.8 0.7 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) Flavoprotein PF02441.14 gi|386001051|ref|YP_005919350.1| - 5e-17 61.7 0.0 7e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.22 gi|386001051|ref|YP_005919350.1| - 5.4e-09 35.2 13.1 4.7e-06 25.9 1.0 3.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386001051|ref|YP_005919350.1| - 2.1e-07 31.2 4.1 0.0047 17.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386001051|ref|YP_005919350.1| - 4e-06 26.4 11.7 0.0097 15.7 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|386001051|ref|YP_005919350.1| - 1.4e-05 25.2 4.8 0.012 15.8 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386001051|ref|YP_005919350.1| - 1.9e-05 24.3 11.3 0.0023 17.6 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386001051|ref|YP_005919350.1| - 2.1e-05 24.1 10.0 0.00032 20.4 7.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386001051|ref|YP_005919350.1| - 2.7e-05 24.0 2.3 0.056 13.4 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386001051|ref|YP_005919350.1| - 0.00037 20.7 3.6 0.2 12.0 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386001051|ref|YP_005919350.1| - 0.0016 19.1 6.6 0.011 16.4 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|386001051|ref|YP_005919350.1| - 0.045 13.6 11.5 1.2 9.0 8.0 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|386001051|ref|YP_005919350.1| - 0.22 12.1 11.9 1.1 9.9 0.6 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|386001051|ref|YP_005919350.1| - 2 8.9 14.1 3.8 8.1 2.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|386001051|ref|YP_005919350.1| - 2.5 8.8 16.6 0.77 10.4 4.0 3.1 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|386001051|ref|YP_005919350.1| - 3.5 8.0 12.1 1.9 8.9 0.7 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain GATase PF00117.23 gi|386001052|ref|YP_005919351.1| - 1e-34 119.6 0.0 1.1e-34 119.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|386001052|ref|YP_005919351.1| - 1.1e-13 51.1 0.3 5.4e-13 48.8 0.1 2.1 2 1 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|386001052|ref|YP_005919351.1| - 0.078 12.5 1.5 0.33 10.5 1.0 1.9 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CxxCxxCC PF03692.10 gi|386001053|ref|YP_005919352.1| - 9.9e-10 38.7 0.8 3.5e-09 36.9 0.6 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Pentapeptide PF00805.17 gi|386001054|ref|YP_005919353.1| - 8.4e-32 107.8 24.1 4e-12 45.0 2.1 4.5 1 1 2 4 4 4 4 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|386001054|ref|YP_005919353.1| - 8.6e-12 44.7 0.1 2.4e-06 27.2 0.0 2.9 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|386001054|ref|YP_005919353.1| - 3.2e-11 42.9 0.0 0.0014 18.4 0.0 3.5 2 1 1 3 3 3 3 Pentapeptide repeats (9 copies) Thg1C PF14413.1 gi|386001056|ref|YP_005919355.1| - 1.7e-23 82.5 0.0 2.3e-23 82.1 0.0 1.1 1 0 0 1 1 1 1 Thg1 C terminal domain Thg1 PF04446.7 gi|386001056|ref|YP_005919355.1| - 1.2e-21 76.7 0.0 1.5e-21 76.3 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase PRC PF05239.11 gi|386001057|ref|YP_005919356.1| - 9e-13 47.9 1.6 1e-12 47.7 1.1 1.2 1 0 0 1 1 1 1 PRC-barrel domain Glyco_hydro_114 PF03537.8 gi|386001058|ref|YP_005919357.1| - 1.1 9.1 8.4 6.1 6.6 0.2 3.0 3 0 0 3 3 3 0 Glycoside-hydrolase family GH114 GMP_synt_C PF00958.17 gi|386001060|ref|YP_005919359.1| - 6.8e-32 109.0 0.0 1.3e-31 108.1 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|386001060|ref|YP_005919359.1| - 6.6e-12 44.8 0.0 2.9e-11 42.7 0.0 1.8 1 1 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|386001060|ref|YP_005919359.1| - 0.00092 17.8 0.0 0.0094 14.5 0.0 2.0 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|386001060|ref|YP_005919359.1| - 0.0019 17.5 0.0 0.0045 16.2 0.0 1.6 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|386001060|ref|YP_005919359.1| - 0.004 16.6 0.0 0.006 16.1 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|386001060|ref|YP_005919359.1| - 0.0098 15.3 0.0 0.028 13.8 0.0 1.7 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.14 gi|386001060|ref|YP_005919359.1| - 0.012 14.6 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase IGPD PF00475.13 gi|386001061|ref|YP_005919360.1| - 7e-45 152.4 0.0 9.2e-45 152.0 0.0 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.16 gi|386001062|ref|YP_005919361.1| - 1.8e-67 226.9 0.4 2.1e-67 226.7 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|386001062|ref|YP_005919361.1| - 2.7e-06 26.6 2.4 0.00023 20.3 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|386001062|ref|YP_005919361.1| - 2e-05 23.9 1.4 0.00011 21.5 0.1 2.1 2 0 0 2 2 2 1 PcrB family Dus PF01207.12 gi|386001062|ref|YP_005919361.1| - 2.3e-05 23.3 0.2 0.0086 14.9 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|386001062|ref|YP_005919361.1| - 3.6e-05 23.0 10.0 0.0018 17.4 2.7 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.16 gi|386001062|ref|YP_005919361.1| - 6e-05 22.1 0.3 0.005 15.8 0.0 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NanE PF04131.9 gi|386001062|ref|YP_005919361.1| - 0.00087 18.3 0.7 0.0049 15.8 0.0 2.0 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|386001062|ref|YP_005919361.1| - 0.0015 17.6 2.5 0.016 14.3 0.4 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI IGPS PF00218.16 gi|386001062|ref|YP_005919361.1| - 0.0054 15.8 0.1 0.27 10.2 0.0 2.1 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|386001062|ref|YP_005919361.1| - 0.017 13.9 7.6 0.02 13.7 0.4 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Trp_syntA PF00290.15 gi|386001062|ref|YP_005919361.1| - 0.018 13.5 0.5 0.19 10.2 0.0 2.1 2 0 0 2 2 2 0 Tryptophan synthase alpha chain IMPDH PF00478.20 gi|386001062|ref|YP_005919361.1| - 0.02 13.8 0.7 3.7 6.3 0.0 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|386001062|ref|YP_005919361.1| - 0.12 11.2 0.1 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase DEAD_assoc PF08494.6 gi|386001063|ref|YP_005919362.1| - 6.3e-39 133.6 0.0 1.1e-38 132.8 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|386001063|ref|YP_005919362.1| - 5.6e-33 113.8 0.0 2.3e-32 111.8 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|386001063|ref|YP_005919362.1| - 7.7e-19 67.3 0.1 5.2e-17 61.4 0.1 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|386001063|ref|YP_005919362.1| - 0.00016 21.5 0.0 0.4 10.4 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|386001063|ref|YP_005919362.1| - 0.00058 18.7 0.0 0.0013 17.5 0.0 1.5 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_25 PF13481.1 gi|386001063|ref|YP_005919362.1| - 0.016 14.5 0.7 0.31 10.4 0.0 2.9 3 0 0 3 3 3 0 AAA domain YdjO PF14169.1 gi|386001063|ref|YP_005919362.1| - 0.069 12.6 1.3 0.17 11.3 0.9 1.6 1 0 0 1 1 1 0 Cold-inducible protein YdjO Zn-ribbon_8 PF09723.5 gi|386001063|ref|YP_005919362.1| - 0.15 12.0 0.3 0.31 11.0 0.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Lysine_decarbox PF03641.9 gi|386001064|ref|YP_005919363.1| - 1e-09 38.2 0.4 2e-09 37.3 0.3 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|386001064|ref|YP_005919363.1| - 7.4e-06 25.0 2.2 1.3e-05 24.2 1.3 1.6 1 1 1 2 2 2 1 DNA recombination-mediator protein A tRNA-synt_His PF13393.1 gi|386001065|ref|YP_005919364.1| - 1.7e-60 204.7 2.9 6e-59 199.6 2.0 2.1 1 1 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|386001065|ref|YP_005919364.1| - 1.2e-22 80.3 0.0 1.9e-22 79.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|386001065|ref|YP_005919364.1| - 3.9e-11 42.7 0.2 2e-10 40.4 0.0 2.2 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|386001065|ref|YP_005919364.1| - 2.7e-05 23.1 0.1 0.027 13.2 0.0 2.9 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|386001065|ref|YP_005919364.1| - 0.00042 19.5 0.0 0.0026 16.9 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) TBP PF00352.16 gi|386001066|ref|YP_005919365.1| - 5.2e-64 211.6 0.3 2e-31 107.1 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|386001066|ref|YP_005919365.1| - 7.7e-09 35.4 0.0 0.0019 18.2 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Saccharop_dh_N PF04455.7 gi|386001067|ref|YP_005919366.1| - 8.8e-34 115.7 0.1 1.8e-33 114.7 0.1 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region DNA_ligase_A_M PF01068.16 gi|386001068|ref|YP_005919367.1| - 1.3e-15 57.3 0.0 2.9e-15 56.1 0.0 1.5 1 1 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|386001068|ref|YP_005919367.1| - 0.00028 20.7 0.0 0.0037 17.0 0.0 2.1 1 1 0 1 1 1 1 RNA ligase CBS PF00571.23 gi|386001069|ref|YP_005919368.1| - 5.3e-42 141.3 12.1 1e-11 44.4 0.1 4.1 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.9 gi|386001069|ref|YP_005919368.1| - 0.012 15.6 0.0 8.2 6.5 0.0 2.8 2 1 1 3 3 3 0 Ribosomal protein L9, C-terminal domain DUF746 PF05344.6 gi|386001069|ref|YP_005919368.1| - 0.055 13.0 0.0 0.59 9.7 0.0 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) DUF2285 PF10074.4 gi|386001069|ref|YP_005919368.1| - 0.12 12.7 0.8 0.43 10.9 0.1 2.2 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2285) CBS PF00571.23 gi|386001070|ref|YP_005919369.1| - 5.4e-50 166.9 11.5 3.1e-16 58.8 0.0 4.2 4 0 0 4 4 4 4 CBS domain Acetyltransf_10 PF13673.1 gi|386001070|ref|YP_005919369.1| - 0.012 15.6 0.1 0.96 9.5 0.0 3.3 3 1 1 4 4 4 0 Acetyltransferase (GNAT) domain CBS PF00571.23 gi|386001071|ref|YP_005919370.1| - 2.1e-47 158.6 3.3 5.8e-14 51.6 0.0 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|386001072|ref|YP_005919371.1| - 1.5e-49 165.4 5.2 4.3e-13 48.8 0.1 4.1 4 0 0 4 4 4 4 CBS domain PRC PF05239.11 gi|386001072|ref|YP_005919371.1| - 0.00032 20.4 2.6 0.12 12.2 0.0 2.7 3 0 0 3 3 3 2 PRC-barrel domain Lip_A_acyltrans PF03279.8 gi|386001072|ref|YP_005919371.1| - 0.18 10.6 0.0 0.35 9.6 0.0 1.4 1 1 0 1 1 1 0 Bacterial lipid A biosynthesis acyltransferase CBS PF00571.23 gi|386001073|ref|YP_005919372.1| - 6e-27 93.1 3.3 9.6e-18 63.7 0.2 2.2 2 0 0 2 2 2 2 CBS domain RecR PF02132.10 gi|386001073|ref|YP_005919372.1| - 0.24 10.8 1.5 0.73 9.3 1.1 1.8 1 0 0 1 1 1 0 RecR protein MoCF_biosynth PF00994.19 gi|386001074|ref|YP_005919373.1| - 1.8e-25 89.0 0.0 2.1e-25 88.8 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain CGGC PF08821.6 gi|386001075|ref|YP_005919374.1| - 1.2e-16 60.6 0.0 1.3e-16 60.5 0.0 1.0 1 0 0 1 1 1 1 CGGC domain Pterin_bind PF00809.17 gi|386001075|ref|YP_005919374.1| - 0.073 12.4 0.0 0.081 12.2 0.0 1.1 1 0 0 1 1 1 0 Pterin binding enzyme APH PF01636.18 gi|386001076|ref|YP_005919375.1| - 9e-11 41.9 0.1 1.3e-05 25.0 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|386001076|ref|YP_005919375.1| - 5.8e-09 35.5 0.0 9.3e-09 34.8 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|386001076|ref|YP_005919375.1| - 1.4e-06 27.5 0.0 1.5e-05 24.1 0.0 2.0 1 1 1 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family WaaY PF06176.6 gi|386001076|ref|YP_005919375.1| - 5.2e-05 22.5 0.0 7.5e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.20 gi|386001076|ref|YP_005919375.1| - 0.00015 21.0 0.2 0.00028 20.1 0.1 1.7 1 1 0 1 1 1 1 Protein kinase domain EcKinase PF02958.15 gi|386001076|ref|YP_005919375.1| - 0.018 14.1 0.0 0.023 13.8 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase Pkinase_Tyr PF07714.12 gi|386001076|ref|YP_005919375.1| - 0.057 12.4 0.0 0.084 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein tyrosine kinase Choline_kinase PF01633.15 gi|386001076|ref|YP_005919375.1| - 0.098 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Choline/ethanolamine kinase Alba PF01918.16 gi|386001077|ref|YP_005919376.1| - 1.9e-17 62.6 0.3 2.4e-17 62.2 0.2 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|386001077|ref|YP_005919376.1| - 0.037 13.6 0.1 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Formyl_trans_N PF00551.14 gi|386001078|ref|YP_005919377.1| - 5.1e-50 169.5 0.0 5.8e-50 169.3 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase ubiquitin PF00240.18 gi|386001078|ref|YP_005919377.1| - 0.033 13.5 0.0 0.21 10.9 0.0 2.0 2 0 0 2 2 2 0 Ubiquitin family HIT PF01230.18 gi|386001079|ref|YP_005919378.1| - 1.9e-12 47.5 0.0 2.8e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|386001079|ref|YP_005919378.1| - 6.3e-08 32.8 0.0 8.4e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|386001079|ref|YP_005919378.1| - 0.00022 20.8 0.1 0.00034 20.2 0.1 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF523 PF04463.7 gi|386001081|ref|YP_005919380.1| - 1.1e-12 47.9 0.0 2.6e-12 46.7 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF523) Glyco_transf_4 PF13439.1 gi|386001081|ref|YP_005919380.1| - 0.15 11.7 0.0 8.7 6.0 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 bPH_3 PF14470.1 gi|386001082|ref|YP_005919381.1| - 0.0029 17.8 0.1 0.0038 17.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial PH domain DUF1297 PF06973.7 gi|386001083|ref|YP_005919382.1| - 1.3e-77 259.3 0.0 1.8e-77 258.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|386001083|ref|YP_005919382.1| - 6.3e-44 148.7 0.0 1e-43 148.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|386001083|ref|YP_005919382.1| - 0.0068 16.1 0.0 0.13 11.9 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp domain GXGXG PF01493.14 gi|386001084|ref|YP_005919383.1| - 3.5e-32 111.0 15.8 4.9e-32 110.5 11.0 1.1 1 0 0 1 1 1 1 GXGXG motif Amidohydro_3 PF07969.6 gi|386001085|ref|YP_005919384.1| - 4.5e-56 190.8 0.6 5.8e-56 190.4 0.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|386001085|ref|YP_005919384.1| - 4.2e-10 39.2 0.2 6.4e-08 32.2 0.0 2.6 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_4 PF13147.1 gi|386001085|ref|YP_005919384.1| - 1e-05 25.7 5.1 0.00044 20.3 1.1 2.4 2 0 0 2 2 2 2 Amidohydrolase Cupin_2 PF07883.6 gi|386001085|ref|YP_005919384.1| - 0.025 14.0 0.1 1.1 8.8 0.0 2.6 2 0 0 2 2 2 0 Cupin domain Molybdopterin PF00384.17 gi|386001086|ref|YP_005919385.1| - 1.7e-16 60.0 0.0 5.6e-15 55.0 0.0 2.3 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.17 gi|386001086|ref|YP_005919385.1| - 0.017 14.8 0.7 4.4 7.0 0.0 3.6 3 1 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain Molybdop_Fe4S4 PF04879.11 gi|386001086|ref|YP_005919385.1| - 0.1 12.3 1.6 0.36 10.6 1.1 1.9 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.16 gi|386001087|ref|YP_005919386.1| - 7e-12 45.1 0.0 9e-12 44.7 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Aconitase_C PF00694.14 gi|386001088|ref|YP_005919387.1| - 4.7e-20 72.0 0.1 2.5e-19 69.6 0.1 1.8 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|386001088|ref|YP_005919387.1| - 0.0015 18.0 0.0 0.0051 16.2 0.0 1.7 1 1 1 2 2 2 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.15 gi|386001089|ref|YP_005919388.1| - 3e-99 332.2 0.0 3.5e-99 332.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase RNA_pol_Rpb5_C PF01191.14 gi|386001090|ref|YP_005919389.1| - 1.8e-29 101.1 0.0 1.9e-29 101.0 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF4283 PF14111.1 gi|386001090|ref|YP_005919389.1| - 0.061 12.4 0.0 0.064 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) RNA_pol_Rpb2_1 PF04563.10 gi|386001091|ref|YP_005919390.1| - 1.6e-56 190.4 0.0 1.9e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|386001091|ref|YP_005919390.1| - 5.3e-27 94.4 0.1 8e-27 93.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|386001091|ref|YP_005919390.1| - 7.7e-25 86.4 0.0 1.5e-24 85.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 Acetate_kinase PF00871.12 gi|386001091|ref|YP_005919390.1| - 0.14 10.6 0.0 0.22 9.9 0.0 1.2 1 0 0 1 1 1 0 Acetokinase family RNA_pol_Rpb2_6 PF00562.23 gi|386001092|ref|YP_005919391.1| - 3.8e-120 401.1 0.0 4.8e-120 400.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|386001092|ref|YP_005919391.1| - 3.2e-28 97.7 0.0 7e-28 96.7 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|386001092|ref|YP_005919391.1| - 3.4e-22 77.9 0.4 7.9e-22 76.8 0.3 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|386001092|ref|YP_005919391.1| - 2.2e-13 49.9 3.0 4.8e-13 48.8 2.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Nudix_N_2 PF14803.1 gi|386001092|ref|YP_005919391.1| - 0.038 13.6 0.3 7.7 6.2 0.0 2.7 2 0 0 2 2 2 0 Nudix N-terminal Y1_Tnp PF01797.11 gi|386001092|ref|YP_005919391.1| - 0.069 13.0 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Transposase IS200 like Auto_anti-p27 PF06677.7 gi|386001092|ref|YP_005919391.1| - 0.21 11.3 0.6 0.51 10.1 0.4 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RecR PF02132.10 gi|386001092|ref|YP_005919391.1| - 0.48 9.9 1.9 0.95 8.9 0.1 2.2 1 1 1 2 2 2 0 RecR protein RNA_pol_Rpb1_1 PF04997.7 gi|386001093|ref|YP_005919392.1| - 2.7e-89 299.7 0.0 4.5e-86 289.1 0.0 2.2 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|386001093|ref|YP_005919392.1| - 4.1e-67 225.2 0.0 6.1e-67 224.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|386001093|ref|YP_005919392.1| - 1.5e-32 112.5 0.0 2.7e-32 111.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|386001093|ref|YP_005919392.1| - 5.2e-32 109.7 0.0 1.1e-31 108.7 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|386001093|ref|YP_005919392.1| - 4.3e-30 104.9 0.1 6.9e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-ribbon_3 PF13248.1 gi|386001093|ref|YP_005919392.1| - 0.21 10.8 7.1 0.3 10.3 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Rpr2 PF04032.11 gi|386001093|ref|YP_005919392.1| - 1.3 8.9 7.3 8.1 6.4 0.4 2.9 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain RNA_pol_Rpb1_5 PF04998.12 gi|386001094|ref|YP_005919393.1| - 9.4e-51 172.6 0.1 1.3e-50 172.2 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Secretin_N PF03958.12 gi|386001094|ref|YP_005919393.1| - 0.033 14.3 0.1 0.078 13.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain NAC PF01849.13 gi|386001094|ref|YP_005919393.1| - 0.038 13.4 0.2 0.097 12.2 0.1 1.7 1 0 0 1 1 1 0 NAC domain SOCS_box PF07525.11 gi|386001094|ref|YP_005919393.1| - 0.14 12.0 0.3 0.3 10.9 0.2 1.6 1 0 0 1 1 1 0 SOCS box Ribosomal_L7Ae PF01248.21 gi|386001095|ref|YP_005919394.1| - 8.2e-13 47.6 0.0 9.9e-13 47.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF500 PF04366.7 gi|386001095|ref|YP_005919394.1| - 0.033 13.6 0.0 0.047 13.1 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF500) KH_2 PF07650.12 gi|386001096|ref|YP_005919395.1| - 1.8e-22 78.6 6.6 9.2e-17 60.3 1.3 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|386001096|ref|YP_005919395.1| - 2.5e-15 56.0 1.8 2.5e-15 56.0 1.2 1.9 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|386001096|ref|YP_005919395.1| - 5.6e-10 38.7 1.4 5.1e-05 22.8 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|386001096|ref|YP_005919395.1| - 4.1e-05 23.1 4.5 0.0037 16.8 1.5 2.3 2 0 0 2 2 2 2 KH domain DUF1565 PF07602.6 gi|386001096|ref|YP_005919395.1| - 0.038 13.1 0.3 0.049 12.7 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1565) KH_3 PF13014.1 gi|386001096|ref|YP_005919395.1| - 3 7.6 9.3 0.27 10.9 0.3 3.0 3 0 0 3 3 3 0 KH domain Ribosom_S12_S23 PF00164.20 gi|386001097|ref|YP_005919396.1| - 9.4e-37 125.1 0.3 1.1e-36 124.9 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|386001098|ref|YP_005919397.1| - 1.7e-40 137.9 3.6 2e-40 137.7 2.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Pyr_redox PF00070.22 gi|386001099|ref|YP_005919398.1| - 4e-18 65.6 1.8 1.9e-13 50.6 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|386001099|ref|YP_005919398.1| - 5.2e-18 65.6 0.0 8e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|386001099|ref|YP_005919398.1| - 5.5e-08 33.1 0.0 7.6e-06 26.1 0.0 2.8 2 2 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|386001099|ref|YP_005919398.1| - 9.4e-07 28.0 2.0 0.097 11.5 0.2 3.2 2 1 1 3 3 3 3 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|386001099|ref|YP_005919398.1| - 0.00034 19.6 0.0 0.097 11.5 0.0 2.2 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.1 gi|386001099|ref|YP_005919398.1| - 0.0012 18.7 0.1 1.5 8.9 0.0 2.9 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|386001099|ref|YP_005919398.1| - 0.085 12.6 0.2 11 5.7 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding Chorismate_synt PF01264.16 gi|386001100|ref|YP_005919399.1| - 8.4e-150 498.0 0.1 9.5e-150 497.8 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase MoeA_N PF03453.12 gi|386001101|ref|YP_005919400.1| - 2.4e-46 157.0 1.1 4.9e-46 156.0 0.8 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|386001101|ref|YP_005919400.1| - 8.6e-28 96.5 0.0 2.1e-27 95.2 0.0 1.7 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|386001101|ref|YP_005919400.1| - 6.5e-17 61.1 0.7 1.4e-16 60.0 0.5 1.6 1 0 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.10 gi|386001101|ref|YP_005919400.1| - 7.7e-12 45.0 0.1 7.7e-12 45.0 0.1 2.6 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) NUDIX PF00293.23 gi|386001101|ref|YP_005919400.1| - 0.051 13.2 0.3 0.1 12.2 0.2 1.5 1 0 0 1 1 1 0 NUDIX domain DNA_primase_lrg PF04104.9 gi|386001103|ref|YP_005919402.1| - 4.6e-35 121.1 0.0 1.4e-34 119.5 0.0 1.7 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_N PF00705.13 gi|386001104|ref|YP_005919403.1| - 1.9e-14 53.2 0.2 5.4e-14 51.7 0.1 1.7 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|386001104|ref|YP_005919403.1| - 2.1e-11 43.8 0.0 1.6e-07 31.2 0.0 3.6 2 2 1 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|386001104|ref|YP_005919403.1| - 0.00016 20.8 0.0 0.00059 19.0 0.0 1.8 2 0 0 2 2 2 1 Rad9 DNA_pol3_beta PF00712.14 gi|386001104|ref|YP_005919403.1| - 0.0041 16.9 0.1 0.047 13.5 0.1 2.4 2 1 0 2 2 2 1 DNA polymerase III beta subunit, N-terminal domain TFIIS_C PF01096.13 gi|386001105|ref|YP_005919404.1| - 6.5e-18 64.0 8.0 1.6e-17 62.7 3.0 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|386001105|ref|YP_005919404.1| - 8.2e-06 25.5 3.2 0.00038 20.2 0.6 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DUF2296 PF10058.4 gi|386001105|ref|YP_005919404.1| - 0.00055 19.6 1.7 1.5 8.6 0.0 3.1 3 0 0 3 3 3 1 Predicted integral membrane metal-binding protein (DUF2296) DZR PF12773.2 gi|386001105|ref|YP_005919404.1| - 0.0016 18.1 3.3 0.03 14.1 2.3 2.3 1 1 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|386001105|ref|YP_005919404.1| - 0.0046 16.2 5.2 0.21 10.9 2.0 3.0 2 1 0 2 2 2 1 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|386001105|ref|YP_005919404.1| - 0.0075 16.2 2.9 0.93 9.5 0.1 3.1 3 0 0 3 3 3 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2387 PF09526.5 gi|386001105|ref|YP_005919404.1| - 0.0079 16.0 1.4 0.056 13.3 0.2 2.2 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) Elf1 PF05129.8 gi|386001105|ref|YP_005919404.1| - 0.008 15.8 3.2 1.7 8.3 0.9 2.7 2 1 0 2 2 2 1 Transcription elongation factor Elf1 like PhnA_Zn_Ribbon PF08274.7 gi|386001105|ref|YP_005919404.1| - 0.0093 15.7 1.5 0.23 11.2 0.3 2.6 2 1 0 2 2 2 1 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.1 gi|386001105|ref|YP_005919404.1| - 0.013 15.1 5.1 1 8.9 0.5 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|386001105|ref|YP_005919404.1| - 0.013 15.2 5.5 1.3 8.7 0.7 3.2 3 0 0 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|386001105|ref|YP_005919404.1| - 0.02 14.3 9.3 0.18 11.3 0.1 3.1 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|386001105|ref|YP_005919404.1| - 0.037 13.9 8.8 1.7 8.6 0.3 3.2 3 0 0 3 3 3 0 Zinc ribbon domain Ogr_Delta PF04606.7 gi|386001105|ref|YP_005919404.1| - 0.038 13.6 5.1 0.22 11.2 0.3 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-H2C2_2 PF13465.1 gi|386001105|ref|YP_005919404.1| - 0.04 14.2 5.5 0.54 10.6 0.0 2.7 3 0 0 3 3 2 0 Zinc-finger double domain DUF1610 PF07754.6 gi|386001105|ref|YP_005919404.1| - 0.043 13.9 1.5 0.043 13.9 1.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) C1_4 PF07975.7 gi|386001105|ref|YP_005919404.1| - 0.044 13.7 2.3 5.2 7.1 0.3 2.5 2 1 0 2 2 2 0 TFIIH C1-like domain Lar_restr_allev PF14354.1 gi|386001105|ref|YP_005919404.1| - 0.045 14.0 2.0 0.58 10.4 0.6 2.2 1 1 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|386001105|ref|YP_005919404.1| - 0.058 12.9 8.5 2.1 7.9 0.8 3.2 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|386001105|ref|YP_005919404.1| - 0.06 13.0 8.2 0.15 11.7 1.6 2.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain RRN7 PF11781.3 gi|386001105|ref|YP_005919404.1| - 0.062 12.8 6.6 2.1 7.8 0.0 3.0 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-HIT PF04438.11 gi|386001105|ref|YP_005919404.1| - 0.062 12.9 9.3 0.13 11.9 0.3 3.1 3 0 0 3 3 3 0 HIT zinc finger UPF0547 PF10571.4 gi|386001105|ref|YP_005919404.1| - 0.063 12.9 2.6 2.2 8.0 0.0 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-C2H2_4 PF13894.1 gi|386001105|ref|YP_005919404.1| - 0.074 13.4 4.1 44 4.7 0.3 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger zf-DNA_Pol PF08996.5 gi|386001105|ref|YP_005919404.1| - 0.078 12.3 1.5 0.15 11.4 0.1 1.8 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger C1_3 PF07649.7 gi|386001105|ref|YP_005919404.1| - 0.091 12.8 4.5 7.8 6.6 0.1 3.0 3 0 0 3 3 3 0 C1-like domain HypA PF01155.14 gi|386001105|ref|YP_005919404.1| - 0.092 12.4 5.4 0.052 13.2 0.7 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family NOB1_Zn_bind PF08772.6 gi|386001105|ref|YP_005919404.1| - 0.13 12.0 6.6 10 6.0 0.0 2.8 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-dskA_traR PF01258.12 gi|386001105|ref|YP_005919404.1| - 0.17 11.6 5.9 0.7 9.6 0.1 2.6 3 0 0 3 3 2 0 Prokaryotic dksA/traR C4-type zinc finger Ribosomal_L37e PF01907.14 gi|386001105|ref|YP_005919404.1| - 0.17 11.6 3.2 3 7.7 0.2 2.9 3 0 0 3 3 3 0 Ribosomal protein L37e Nudix_N_2 PF14803.1 gi|386001105|ref|YP_005919404.1| - 0.17 11.5 6.2 7.3 6.3 0.1 3.0 2 1 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|386001105|ref|YP_005919404.1| - 0.18 11.0 7.1 0.95 8.7 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DUF2688 PF10892.3 gi|386001105|ref|YP_005919404.1| - 0.19 11.4 1.7 0.23 11.1 0.3 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2688) zf-RING_4 PF14570.1 gi|386001105|ref|YP_005919404.1| - 0.19 11.3 2.6 8.3 6.0 0.0 2.9 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain zf-TFIIB PF13453.1 gi|386001105|ref|YP_005919404.1| - 0.26 10.4 6.2 0.42 9.8 2.2 2.5 2 1 0 2 2 2 0 Transcription factor zinc-finger DUF3797 PF12677.2 gi|386001105|ref|YP_005919404.1| - 0.31 10.6 0.2 0.31 10.6 0.1 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3797) Desulfoferrod_N PF06397.7 gi|386001105|ref|YP_005919404.1| - 0.33 10.3 4.6 0.85 9.0 0.1 3.0 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-C2H2 PF00096.21 gi|386001105|ref|YP_005919404.1| - 0.35 11.3 6.4 16 6.0 0.1 3.3 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-CHY PF05495.7 gi|386001105|ref|YP_005919404.1| - 0.37 10.9 4.7 4.4 7.5 0.8 2.5 1 1 1 2 2 2 0 CHY zinc finger Baculo_LEF5_C PF11792.3 gi|386001105|ref|YP_005919404.1| - 0.38 10.1 0.2 0.38 10.1 0.2 2.4 3 0 0 3 3 2 0 Baculoviridae late expression factor 5 C-terminal domain Ribosomal_S27e PF01667.12 gi|386001105|ref|YP_005919404.1| - 0.45 10.0 3.3 4 7.0 0.1 2.8 3 0 0 3 3 3 0 Ribosomal protein S27 CpXC PF14353.1 gi|386001105|ref|YP_005919404.1| - 0.66 9.9 3.5 2.4 8.1 0.6 2.5 2 1 0 2 2 2 0 CpXC protein Prok-RING_1 PF14446.1 gi|386001105|ref|YP_005919404.1| - 0.78 9.5 3.6 18 5.1 0.1 2.9 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-IS66 PF13005.2 gi|386001105|ref|YP_005919404.1| - 1.3 9.0 5.2 6.5 6.8 0.2 2.9 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 DUF1451 PF07295.6 gi|386001105|ref|YP_005919404.1| - 1.3 8.7 3.8 1.8 8.3 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1451) zf-AN1 PF01428.11 gi|386001105|ref|YP_005919404.1| - 1.7 8.5 5.1 15 5.5 0.1 3.0 3 0 0 3 3 3 0 AN1-like Zinc finger Zn_ribbon_recom PF13408.1 gi|386001105|ref|YP_005919404.1| - 2.5 8.4 9.2 56 4.1 6.4 2.5 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain ACT PF01842.20 gi|386001106|ref|YP_005919405.1| - 3.1e-07 29.7 0.1 1.2e-06 27.7 0.0 2.1 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|386001106|ref|YP_005919405.1| - 0.00051 20.3 0.0 0.001 19.3 0.0 1.5 1 0 0 1 1 1 1 ACT domain Peripla_BP_1 PF00532.16 gi|386001106|ref|YP_005919405.1| - 0.0063 15.7 0.1 0.0091 15.2 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Transketolase_C PF02780.15 gi|386001106|ref|YP_005919405.1| - 0.035 14.0 0.2 0.058 13.3 0.1 1.3 1 0 0 1 1 1 0 Transketolase, C-terminal domain ACT_6 PF13740.1 gi|386001106|ref|YP_005919405.1| - 0.038 13.7 0.0 0.08 12.6 0.0 1.7 1 0 0 1 1 1 0 ACT domain DUF1178 PF06676.6 gi|386001106|ref|YP_005919405.1| - 0.1 12.8 0.2 1.5 8.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1178) Glutaredoxin PF00462.19 gi|386001107|ref|YP_005919406.1| - 1.4e-07 31.3 0.0 1.8e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.9 gi|386001107|ref|YP_005919406.1| - 0.0017 18.5 0.0 0.0019 18.4 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) CBFD_NFYB_HMF PF00808.18 gi|386001109|ref|YP_005919408.1| - 2e-18 66.1 0.1 2.2e-18 66.0 0.1 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|386001109|ref|YP_005919408.1| - 3.7e-15 55.7 0.2 4.4e-15 55.5 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.8 gi|386001109|ref|YP_005919408.1| - 1.9e-08 33.8 0.0 2.3e-08 33.6 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TAF PF02969.12 gi|386001109|ref|YP_005919408.1| - 1.8e-05 24.5 0.1 2e-05 24.4 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.1 gi|386001109|ref|YP_005919408.1| - 0.00012 22.1 0.0 0.00014 21.9 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID-31kDa PF02291.10 gi|386001109|ref|YP_005919408.1| - 0.00046 19.9 0.0 0.00052 19.7 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-T PF15511.1 gi|386001109|ref|YP_005919408.1| - 0.0046 16.2 0.0 0.0053 16.0 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T EPSP_synthase PF00275.15 gi|386001109|ref|YP_005919408.1| - 0.0077 14.6 0.0 0.0089 14.5 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TFIID_20kDa PF03847.8 gi|386001109|ref|YP_005919408.1| - 0.039 14.2 0.0 0.047 13.9 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.11 gi|386001109|ref|YP_005919408.1| - 0.046 13.5 0.0 0.052 13.3 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit Apo-CIII PF05778.7 gi|386001109|ref|YP_005919408.1| - 0.067 12.5 0.2 0.09 12.1 0.1 1.2 1 0 0 1 1 1 0 Apolipoprotein CIII (Apo-CIII) AAA_32 PF13654.1 gi|386001109|ref|YP_005919408.1| - 0.086 11.4 0.5 0.087 11.4 0.3 1.2 1 0 0 1 1 1 0 AAA domain GatB_N PF02934.10 gi|386001110|ref|YP_005919409.1| - 2.8e-75 252.8 0.0 3.7e-75 252.4 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|386001110|ref|YP_005919409.1| - 2.5e-18 66.1 0.0 4.4e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|386001110|ref|YP_005919409.1| - 3e-13 49.7 0.0 6.1e-13 48.7 0.0 1.6 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|386001110|ref|YP_005919409.1| - 0.0014 18.4 0.1 0.0027 17.5 0.1 1.4 1 0 0 1 1 1 1 Yqey-like protein AAA_16 PF13191.1 gi|386001111|ref|YP_005919410.1| - 2.1e-10 40.9 0.2 1.9e-09 37.7 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|386001111|ref|YP_005919410.1| - 1.1e-08 35.2 0.0 2.4e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|386001111|ref|YP_005919410.1| - 6.3e-07 29.0 0.0 1.6e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA PF00004.24 gi|386001111|ref|YP_005919410.1| - 1.8e-05 24.9 0.0 4.1e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|386001111|ref|YP_005919410.1| - 0.00012 21.7 1.4 0.0024 17.6 0.0 2.8 2 1 1 3 3 3 1 Part of AAA domain AAA_11 PF13086.1 gi|386001111|ref|YP_005919410.1| - 0.00015 21.4 0.0 0.00024 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|386001111|ref|YP_005919410.1| - 0.015 14.9 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|386001111|ref|YP_005919410.1| - 0.022 14.4 0.0 0.078 12.6 0.0 1.8 1 1 0 1 1 1 0 Archaeal ATPase AAA_24 PF13479.1 gi|386001111|ref|YP_005919410.1| - 0.03 13.9 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|386001111|ref|YP_005919410.1| - 0.033 13.7 0.1 1.4 8.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain Phage-MuB_C PF09077.6 gi|386001111|ref|YP_005919410.1| - 0.036 13.7 0.0 0.068 12.8 0.0 1.4 1 0 0 1 1 1 0 Mu B transposition protein, C terminal AAA_18 PF13238.1 gi|386001111|ref|YP_005919410.1| - 0.039 14.2 0.1 0.4 11.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|386001111|ref|YP_005919410.1| - 0.041 13.2 0.1 4.5 6.6 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|386001111|ref|YP_005919410.1| - 0.045 13.6 0.0 0.14 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_35 PF14516.1 gi|386001111|ref|YP_005919410.1| - 0.054 12.1 0.0 0.18 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain Zeta_toxin PF06414.7 gi|386001111|ref|YP_005919410.1| - 0.066 12.3 0.3 0.29 10.1 0.0 2.2 2 1 0 2 2 2 0 Zeta toxin NTPase_1 PF03266.10 gi|386001111|ref|YP_005919410.1| - 0.077 12.7 0.1 0.4 10.3 0.0 2.1 3 0 0 3 3 2 0 NTPase RecA PF00154.16 gi|386001111|ref|YP_005919410.1| - 0.081 11.9 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 recA bacterial DNA recombination protein RNA_helicase PF00910.17 gi|386001111|ref|YP_005919410.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|386001111|ref|YP_005919410.1| - 0.14 10.9 0.0 0.2 10.4 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain SRP54 PF00448.17 gi|386001111|ref|YP_005919410.1| - 0.15 11.5 0.0 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF2075 PF09848.4 gi|386001111|ref|YP_005919410.1| - 0.16 10.9 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TrwB_AAD_bind PF10412.4 gi|386001111|ref|YP_005919410.1| - 0.16 10.5 0.0 0.27 9.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PBP_like_2 PF12849.2 gi|386001112|ref|YP_005919411.1| - 7.9e-43 146.9 3.8 1.9e-42 145.6 2.6 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|386001112|ref|YP_005919411.1| - 2.5e-20 72.2 0.1 3.2e-20 71.9 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|386001112|ref|YP_005919411.1| - 5.1e-12 45.9 0.1 8.5e-12 45.1 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|386001112|ref|YP_005919411.1| - 0.003 17.3 0.8 0.014 15.1 0.5 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|386001112|ref|YP_005919411.1| - 0.015 14.6 0.0 0.027 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein PHP PF02811.14 gi|386001113|ref|YP_005919412.1| - 9.8e-07 28.7 0.0 1.7e-06 27.9 0.0 1.5 1 1 0 1 1 1 1 PHP domain HTH_24 PF13412.1 gi|386001114|ref|YP_005919413.1| - 0.0097 15.2 0.0 0.019 14.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|386001114|ref|YP_005919413.1| - 0.053 13.2 0.0 0.44 10.2 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.11 gi|386001114|ref|YP_005919413.1| - 0.11 11.8 0.1 0.27 10.5 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 DUF4252 PF14060.1 gi|386001115|ref|YP_005919414.1| - 0.027 14.0 0.2 0.043 13.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4252) PBP_like_2 PF12849.2 gi|386001116|ref|YP_005919415.1| - 2.9e-39 135.2 6.4 7.1e-39 133.9 4.4 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|386001116|ref|YP_005919415.1| - 9.6e-23 80.1 0.4 1.3e-22 79.6 0.3 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|386001116|ref|YP_005919415.1| - 1.5e-07 31.2 0.1 1.7e-06 27.8 0.1 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|386001116|ref|YP_005919415.1| - 0.0018 18.1 1.3 0.0044 16.8 0.9 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|386001116|ref|YP_005919415.1| - 0.022 13.8 0.0 0.11 11.5 0.0 2.0 1 1 0 1 1 1 0 LysR substrate binding domain PBP_like_2 PF12849.2 gi|386001117|ref|YP_005919416.1| - 3.3e-36 125.1 0.7 1.2e-35 123.4 0.5 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|386001117|ref|YP_005919416.1| - 3.6e-14 52.1 0.1 5.5e-14 51.5 0.1 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|386001117|ref|YP_005919416.1| - 0.00072 19.2 0.0 0.005 16.4 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PLDc_N PF13396.1 gi|386001117|ref|YP_005919416.1| - 0.0055 16.3 0.1 0.011 15.3 0.1 1.5 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal SBP_bac_3 PF00497.15 gi|386001117|ref|YP_005919416.1| - 0.11 11.6 0.0 0.19 10.9 0.0 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 AsnC_trans_reg PF01037.16 gi|386001118|ref|YP_005919417.1| - 1e-08 34.7 0.0 1.2e-08 34.4 0.0 1.0 1 0 0 1 1 1 1 AsnC family Alk_phosphatase PF00245.15 gi|386001119|ref|YP_005919418.1| - 5.9e-96 321.7 0.1 1.5e-88 297.3 0.1 2.1 2 0 0 2 2 2 2 Alkaline phosphatase Metalloenzyme PF01676.13 gi|386001119|ref|YP_005919418.1| - 3.2e-10 39.8 0.0 1.2e-09 37.9 0.0 1.8 2 0 0 2 2 2 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|386001119|ref|YP_005919418.1| - 0.031 13.4 0.0 0.41 9.7 0.0 2.2 1 1 0 1 1 1 0 Sulfatase Phosphodiest PF01663.17 gi|386001119|ref|YP_005919418.1| - 0.066 12.5 0.8 0.097 11.9 0.0 1.6 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase BPD_transp_1 PF00528.17 gi|386001120|ref|YP_005919419.1| - 5.7e-28 97.6 9.1 5.7e-28 97.6 6.3 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2755 PF10954.3 gi|386001120|ref|YP_005919419.1| - 9.7 5.9 10.7 0.16 11.7 1.6 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2755) BPD_transp_1 PF00528.17 gi|386001121|ref|YP_005919420.1| - 8.7e-30 103.6 10.9 8.7e-30 103.6 7.5 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|386001122|ref|YP_005919421.1| - 2.6e-24 85.7 10.0 2.6e-24 85.7 6.9 3.2 2 2 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component Carb_kinase PF01256.12 gi|386001123|ref|YP_005919422.1| - 8.3e-47 159.4 0.3 4.1e-46 157.2 0.1 2.0 2 0 0 2 2 2 1 Carbohydrate kinase YjeF_N PF03853.10 gi|386001123|ref|YP_005919422.1| - 2.4e-44 150.9 1.1 1.5e-43 148.3 0.0 2.2 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|386001123|ref|YP_005919422.1| - 3.4e-05 23.1 0.1 5.9e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family DUF498 PF04430.9 gi|386001123|ref|YP_005919422.1| - 0.0021 17.5 0.1 0.46 10.0 0.0 2.8 3 0 0 3 3 3 2 Protein of unknown function (DUF498/DUF598) Nuc_N PF14448.1 gi|386001123|ref|YP_005919422.1| - 0.083 12.4 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Nuclease N terminal MoaC PF01967.16 gi|386001124|ref|YP_005919423.1| - 1.3e-45 154.4 0.5 1.5e-45 154.2 0.3 1.0 1 0 0 1 1 1 1 MoaC family tRNA-synt_1b PF00579.20 gi|386001126|ref|YP_005919425.1| - 4.5e-40 137.6 0.0 1.3e-22 80.2 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) NETI PF14044.1 gi|386001126|ref|YP_005919425.1| - 0.012 15.1 0.0 0.053 13.0 0.0 2.1 2 0 0 2 2 2 0 NETI protein Pribosyltran PF00156.22 gi|386001127|ref|YP_005919426.1| - 4.9e-22 77.9 0.0 7.5e-22 77.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|386001127|ref|YP_005919426.1| - 0.0011 18.1 0.0 0.0016 17.6 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase TrmB PF01978.14 gi|386001128|ref|YP_005919427.1| - 1.4e-05 24.7 0.3 6.4e-05 22.5 0.2 2.1 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|386001128|ref|YP_005919427.1| - 0.0026 17.7 0.0 0.0043 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|386001128|ref|YP_005919427.1| - 0.034 13.8 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family PadR PF03551.9 gi|386001128|ref|YP_005919427.1| - 0.042 13.6 0.1 0.088 12.5 0.0 1.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|386001128|ref|YP_005919427.1| - 0.075 13.3 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF387 PF04079.11 gi|386001128|ref|YP_005919427.1| - 0.078 12.3 0.1 0.097 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) Methyltransf_23 PF13489.1 gi|386001130|ref|YP_005919429.1| - 0.00013 21.7 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386001130|ref|YP_005919429.1| - 0.0035 17.6 0.0 0.0061 16.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386001130|ref|YP_005919429.1| - 0.005 16.8 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MutS_V PF00488.16 gi|386001131|ref|YP_005919430.1| - 2.7e-07 30.2 0.0 4.2e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.1 gi|386001131|ref|YP_005919430.1| - 0.0013 18.9 0.3 0.0013 18.9 0.2 3.0 2 1 0 2 2 2 1 Helix-hairpin-helix domain AAA PF00004.24 gi|386001131|ref|YP_005919430.1| - 0.014 15.5 0.1 0.069 13.3 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF2385 PF09539.5 gi|386001131|ref|YP_005919430.1| - 0.029 14.7 0.1 0.092 13.1 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2385) Spore_YhaL PF14147.1 gi|386001132|ref|YP_005919431.1| - 0.19 11.1 0.8 0.4 10.1 0.6 1.6 1 1 0 1 1 1 0 Sporulation protein YhaL HTH_23 PF13384.1 gi|386001133|ref|YP_005919432.1| - 2.6e-10 39.5 0.0 2.7e-05 23.6 0.0 2.9 2 0 0 2 2 2 2 Homeodomain-like domain GerE PF00196.14 gi|386001133|ref|YP_005919432.1| - 7.3e-08 31.6 0.0 0.0019 17.4 0.0 2.8 2 1 1 3 3 3 2 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|386001133|ref|YP_005919432.1| - 5.2e-07 29.0 0.1 0.0062 15.9 0.0 2.6 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_38 PF13936.1 gi|386001133|ref|YP_005919432.1| - 3.5e-06 26.4 0.0 0.00082 18.8 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|386001133|ref|YP_005919432.1| - 0.00018 21.3 0.2 0.003 17.3 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix HTH_28 PF13518.1 gi|386001133|ref|YP_005919432.1| - 0.00029 20.7 0.0 0.0041 17.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|386001133|ref|YP_005919432.1| - 0.0003 20.9 0.1 0.25 11.5 0.0 2.5 2 1 0 2 2 2 2 Winged helix-turn helix Sigma70_r4 PF04545.11 gi|386001133|ref|YP_005919432.1| - 0.00095 18.4 0.2 0.11 11.8 0.0 2.8 2 1 0 2 2 2 1 Sigma-70, region 4 Terminase_5 PF06056.7 gi|386001133|ref|YP_005919432.1| - 0.0011 18.4 0.0 2 8.0 0.0 2.5 2 0 0 2 2 2 2 Putative ATPase subunit of terminase (gpP-like) HTH_Tnp_1 PF01527.15 gi|386001133|ref|YP_005919432.1| - 0.0014 18.5 0.0 0.023 14.6 0.0 2.4 2 1 0 2 2 2 1 Transposase Sigma70_ECF PF07638.6 gi|386001133|ref|YP_005919432.1| - 0.0014 18.3 0.1 0.22 11.1 0.0 2.3 2 0 0 2 2 2 1 ECF sigma factor HTH_7 PF02796.10 gi|386001133|ref|YP_005919432.1| - 0.0056 16.5 0.0 0.92 9.4 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|386001133|ref|YP_005919432.1| - 0.007 15.7 0.2 0.35 10.2 0.0 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|386001133|ref|YP_005919432.1| - 0.014 15.2 1.9 0.14 12.1 0.0 3.2 5 0 0 5 5 4 0 Iron dependent repressor, N-terminal DNA binding domain CENP-B_N PF04218.8 gi|386001133|ref|YP_005919432.1| - 0.02 14.3 0.0 0.52 9.7 0.0 2.6 2 1 1 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_10 PF04967.7 gi|386001133|ref|YP_005919432.1| - 0.023 14.2 0.2 0.36 10.4 0.0 2.8 2 1 0 2 2 2 0 HTH DNA binding domain MerR_1 PF13411.1 gi|386001133|ref|YP_005919432.1| - 0.029 14.1 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 MerR HTH family regulatory protein HTH_40 PF14493.1 gi|386001133|ref|YP_005919432.1| - 0.038 14.1 0.0 1.6 8.9 0.0 2.5 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|386001133|ref|YP_005919432.1| - 0.053 13.3 0.1 0.79 9.5 0.0 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain GcrA PF07750.6 gi|386001133|ref|YP_005919432.1| - 0.053 13.7 0.2 0.37 10.9 0.0 2.0 1 1 0 2 2 2 0 GcrA cell cycle regulator HTH_17 PF12728.2 gi|386001133|ref|YP_005919432.1| - 0.059 13.6 0.0 0.29 11.4 0.0 2.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|386001133|ref|YP_005919432.1| - 0.069 13.3 0.1 2.1 8.6 0.0 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain UbiA PF01040.13 gi|386001134|ref|YP_005919433.1| - 8.6e-22 77.5 18.3 1.1e-21 77.2 12.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1724 PF08350.5 gi|386001135|ref|YP_005919434.1| - 6.4e-18 64.0 0.4 4.1e-17 61.4 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) TrmB PF01978.14 gi|386001135|ref|YP_005919434.1| - 3.6e-05 23.3 1.3 0.001 18.6 0.1 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|386001135|ref|YP_005919434.1| - 0.0014 18.2 0.3 0.0035 16.9 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|386001135|ref|YP_005919434.1| - 0.0024 17.6 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|386001135|ref|YP_005919434.1| - 0.012 14.9 0.8 0.029 13.7 0.6 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rio2_N PF09202.6 gi|386001135|ref|YP_005919434.1| - 0.035 14.1 0.3 0.69 10.0 0.0 2.8 3 0 0 3 3 3 0 Rio2, N-terminal MarR PF01047.17 gi|386001135|ref|YP_005919434.1| - 0.047 13.3 1.0 0.1 12.3 0.4 1.8 2 0 0 2 2 2 0 MarR family DUF1495 PF07381.6 gi|386001135|ref|YP_005919434.1| - 0.067 12.8 0.4 0.34 10.5 0.0 2.3 2 1 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|386001135|ref|YP_005919434.1| - 0.076 12.8 5.7 0.051 13.3 1.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix Sulfolobus_pRN PF05584.6 gi|386001135|ref|YP_005919434.1| - 0.091 12.7 0.5 13 5.8 0.4 2.6 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein Ldh_2 PF02615.9 gi|386001135|ref|YP_005919434.1| - 0.12 11.0 0.1 0.29 9.8 0.0 1.6 1 1 0 1 1 1 0 Malate/L-lactate dehydrogenase SLA_LP_auto_ag PF05889.8 gi|386001136|ref|YP_005919435.1| - 5.7e-41 140.2 0.0 7.4e-41 139.8 0.0 1.1 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|386001136|ref|YP_005919435.1| - 3e-11 42.6 0.0 4.1e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|386001136|ref|YP_005919435.1| - 5e-11 42.1 0.0 7.4e-11 41.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|386001136|ref|YP_005919435.1| - 5.1e-05 22.5 0.0 7.7e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|386001136|ref|YP_005919435.1| - 0.029 13.4 0.0 0.042 12.8 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.14 gi|386001136|ref|YP_005919435.1| - 0.05 12.0 0.0 0.072 11.5 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain GDPD PF03009.12 gi|386001137|ref|YP_005919436.1| - 7.4e-39 133.7 0.0 5.3e-28 98.2 0.0 2.2 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family zf-like PF04071.7 gi|386001137|ref|YP_005919436.1| - 9.5e-31 105.3 3.3 1.6e-30 104.6 2.3 1.2 1 0 0 1 1 1 1 Cysteine-rich small domain GDPD_2 PF13653.1 gi|386001137|ref|YP_005919436.1| - 1.9e-05 24.6 0.6 0.00011 22.2 0.4 2.4 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family PSDC PF12588.3 gi|386001138|ref|YP_005919437.1| - 0.029 13.9 0.6 0.83 9.2 0.4 2.2 1 1 0 1 1 1 0 Phophatidylserine decarboxylase AP_endonuc_2 PF01261.19 gi|386001139|ref|YP_005919438.1| - 1.8e-24 86.1 0.0 2.3e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF1263 PF06882.7 gi|386001139|ref|YP_005919438.1| - 0.012 15.2 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1263) NAC PF01849.13 gi|386001141|ref|YP_005919440.1| - 1.1e-18 66.4 0.9 1.6e-18 65.9 0.6 1.3 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|386001141|ref|YP_005919440.1| - 0.00079 19.1 0.2 0.013 15.3 0.0 2.1 2 0 0 2 2 2 1 UBA/TS-N domain DUF4473 PF14747.1 gi|386001141|ref|YP_005919440.1| - 0.011 15.9 0.4 0.47 10.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) UBA_4 PF14555.1 gi|386001141|ref|YP_005919440.1| - 0.06 12.8 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain Tub_2 PF04525.7 gi|386001141|ref|YP_005919440.1| - 0.11 11.8 0.1 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Tubby C 2 DUF2786 PF10979.3 gi|386001141|ref|YP_005919440.1| - 0.46 10.2 0.1 0.46 10.2 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) Grp1_Fun34_YaaH PF01184.14 gi|386001142|ref|YP_005919441.1| - 1e-48 165.4 20.9 1.2e-48 165.2 14.5 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Nuc_deoxyrib_tr PF05014.10 gi|386001143|ref|YP_005919442.1| - 0.02 14.7 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Hexapep PF00132.19 gi|386001144|ref|YP_005919443.1| - 1.7e-17 62.0 8.8 1.3e-05 24.4 0.3 4.6 2 2 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|386001144|ref|YP_005919443.1| - 1.1e-14 53.6 6.9 0.00023 20.6 0.0 4.3 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase DUF1952 PF09189.5 gi|386001144|ref|YP_005919443.1| - 0.0038 16.8 0.3 0.036 13.7 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1952) MFS_1 PF07690.11 gi|386001145|ref|YP_005919444.1| - 2.5e-22 79.1 58.2 3.1e-11 42.5 21.3 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Nodulin-like PF06813.8 gi|386001145|ref|YP_005919444.1| - 0.5 9.5 22.9 0.017 14.3 6.8 2.9 2 2 0 2 2 2 0 Nodulin-like FliG_N PF14842.1 gi|386001146|ref|YP_005919445.1| - 0.022 14.8 0.3 0.58 10.2 0.1 2.7 2 0 0 2 2 2 0 FliG N-terminal domain F420_oxidored PF03807.12 gi|386001147|ref|YP_005919446.1| - 0.00029 21.2 0.0 0.00054 20.3 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|386001147|ref|YP_005919446.1| - 0.001 18.1 0.0 0.0017 17.4 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|386001147|ref|YP_005919446.1| - 0.027 14.9 0.0 0.047 14.2 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AdoHcyase_NAD PF00670.16 gi|386001147|ref|YP_005919446.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|386001147|ref|YP_005919446.1| - 0.13 11.5 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|386001147|ref|YP_005919446.1| - 0.16 11.0 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CxxCxxCC PF03692.10 gi|386001148|ref|YP_005919447.1| - 3.6e-11 43.3 4.4 3.6e-11 43.3 3.0 1.9 2 0 0 2 2 2 1 Putative zinc- or iron-chelating domain Hydrolase_3 PF08282.7 gi|386001149|ref|YP_005919448.1| - 3.3e-25 89.1 0.0 2.5e-15 56.7 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|386001149|ref|YP_005919448.1| - 6.1e-08 33.3 0.8 5.9e-06 26.8 0.6 2.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|386001149|ref|YP_005919448.1| - 6.2e-07 29.7 1.1 2.5e-05 24.5 0.0 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|386001149|ref|YP_005919448.1| - 3.1e-06 26.2 0.0 0.0072 15.2 0.0 2.1 2 0 0 2 2 2 2 Trehalose-phosphatase HAD_2 PF13419.1 gi|386001149|ref|YP_005919448.1| - 5.5e-05 23.4 0.1 0.00088 19.5 0.0 2.3 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|386001149|ref|YP_005919448.1| - 0.00016 21.0 0.0 0.00031 20.1 0.0 1.4 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase_like PF13242.1 gi|386001149|ref|YP_005919448.1| - 0.047 13.4 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|386001149|ref|YP_005919448.1| - 0.15 12.0 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Rad51 PF08423.6 gi|386001150|ref|YP_005919449.1| - 2e-87 292.3 0.0 2.8e-87 291.8 0.0 1.2 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|386001150|ref|YP_005919449.1| - 7.7e-14 51.6 1.4 3.1e-13 49.6 1.1 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain RecA PF00154.16 gi|386001150|ref|YP_005919449.1| - 8.3e-13 48.0 0.1 5.1e-06 25.7 0.1 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|386001150|ref|YP_005919449.1| - 1.6e-09 37.4 0.0 2.3e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain HHH PF00633.18 gi|386001150|ref|YP_005919449.1| - 1.8e-09 36.7 0.6 0.00037 20.0 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif KaiC PF06745.8 gi|386001150|ref|YP_005919449.1| - 1.1e-07 31.2 0.1 2.3e-07 30.1 0.0 1.5 1 1 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|386001150|ref|YP_005919449.1| - 1.4e-05 24.8 0.3 3.4e-05 23.6 0.2 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|386001150|ref|YP_005919449.1| - 0.00041 19.8 0.0 0.0043 16.5 0.0 2.3 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|386001150|ref|YP_005919449.1| - 0.00065 19.5 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus CobU PF02283.11 gi|386001150|ref|YP_005919449.1| - 0.00077 18.9 0.0 0.019 14.3 0.0 2.2 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA PF00004.24 gi|386001150|ref|YP_005919449.1| - 0.0015 18.6 0.0 0.0063 16.7 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|386001150|ref|YP_005919449.1| - 0.0019 17.7 0.0 0.0028 17.1 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain DUF4332 PF14229.1 gi|386001150|ref|YP_005919449.1| - 0.0038 17.1 0.5 0.01 15.7 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) AAA_22 PF13401.1 gi|386001150|ref|YP_005919449.1| - 0.0049 17.0 0.0 0.018 15.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|386001150|ref|YP_005919449.1| - 0.0081 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase HhH-GPD PF00730.20 gi|386001150|ref|YP_005919449.1| - 0.074 13.3 0.0 0.13 12.5 0.0 1.5 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein AAA_24 PF13479.1 gi|386001150|ref|YP_005919449.1| - 0.097 12.2 0.0 0.16 11.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|386001150|ref|YP_005919449.1| - 0.099 11.6 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) HHH_3 PF12836.2 gi|386001150|ref|YP_005919449.1| - 0.12 12.3 0.0 21 5.1 0.0 2.5 1 1 1 2 2 2 0 Helix-hairpin-helix motif tRNA_anti-codon PF01336.20 gi|386001151|ref|YP_005919450.1| - 4.1e-24 84.2 8.9 1.7e-08 34.2 0.2 4.4 4 1 1 5 5 5 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|386001151|ref|YP_005919450.1| - 0.022 14.4 0.0 11 5.6 0.0 3.1 3 0 0 3 3 3 0 Replication factor-A C terminal domain PRC PF05239.11 gi|386001151|ref|YP_005919450.1| - 0.23 11.3 2.9 4.2 7.3 0.1 3.5 3 0 0 3 3 3 0 PRC-barrel domain MCE PF02470.15 gi|386001151|ref|YP_005919450.1| - 0.26 11.3 1.6 39 4.3 0.1 3.5 3 0 0 3 3 3 0 mce related protein ABC_tran PF00005.22 gi|386001152|ref|YP_005919451.1| - 1e-58 197.5 0.0 3.4e-28 98.6 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|386001152|ref|YP_005919451.1| - 8.3e-15 55.5 7.0 0.0027 17.7 0.1 4.1 2 2 0 3 3 3 3 AAA domain DUF258 PF03193.11 gi|386001152|ref|YP_005919451.1| - 1.1e-08 34.4 0.2 0.0047 16.1 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|386001152|ref|YP_005919451.1| - 8.4e-08 31.6 0.4 0.28 10.1 0.0 4.0 4 0 0 4 4 4 3 AAA ATPase domain SMC_N PF02463.14 gi|386001152|ref|YP_005919451.1| - 1.1e-06 28.0 2.3 0.0057 15.9 0.0 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|386001152|ref|YP_005919451.1| - 1.1e-06 28.7 0.1 0.056 13.4 0.0 3.1 3 1 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.1 gi|386001152|ref|YP_005919451.1| - 1.4e-06 27.7 1.6 0.014 14.9 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|386001152|ref|YP_005919451.1| - 0.00011 21.7 4.3 1.5 8.2 0.2 3.9 5 0 0 5 5 5 2 AAA-like domain AAA_23 PF13476.1 gi|386001152|ref|YP_005919451.1| - 0.00012 22.5 0.0 0.48 10.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|386001152|ref|YP_005919451.1| - 0.00014 21.6 4.2 0.016 15.1 0.0 4.3 4 2 0 4 4 2 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|386001152|ref|YP_005919451.1| - 0.00037 19.9 5.3 1.2 8.5 0.1 4.5 4 1 0 4 4 4 1 AAA domain AAA_30 PF13604.1 gi|386001152|ref|YP_005919451.1| - 0.00052 19.6 0.4 0.69 9.4 0.0 2.9 3 0 0 3 3 3 2 AAA domain KaiC PF06745.8 gi|386001152|ref|YP_005919451.1| - 0.0027 16.8 3.9 0.048 12.7 0.3 3.1 3 0 0 3 3 3 1 KaiC AAA_22 PF13401.1 gi|386001152|ref|YP_005919451.1| - 0.003 17.7 6.0 2.1 8.4 0.1 3.7 3 0 0 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|386001152|ref|YP_005919451.1| - 0.0035 18.1 7.5 0.11 13.2 0.6 3.7 2 2 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|386001152|ref|YP_005919451.1| - 0.0056 16.9 3.4 0.6 10.4 0.0 3.3 3 1 0 3 3 3 1 AAA domain AAA_28 PF13521.1 gi|386001152|ref|YP_005919451.1| - 0.0077 16.2 0.0 2.8 7.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|386001152|ref|YP_005919451.1| - 0.008 15.6 0.2 0.91 8.9 0.0 3.0 3 0 0 3 3 3 1 IstB-like ATP binding protein NACHT PF05729.7 gi|386001152|ref|YP_005919451.1| - 0.0087 15.7 3.1 1.2 8.8 0.0 2.7 2 0 0 2 2 2 1 NACHT domain MobB PF03205.9 gi|386001152|ref|YP_005919451.1| - 0.016 14.9 2.3 1.6 8.3 0.2 2.8 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|386001152|ref|YP_005919451.1| - 0.016 14.0 1.5 1.2 7.9 0.2 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_19 PF13245.1 gi|386001152|ref|YP_005919451.1| - 0.022 14.4 1.0 2.9 7.7 0.0 3.2 3 0 0 3 3 3 0 Part of AAA domain PduV-EutP PF10662.4 gi|386001152|ref|YP_005919451.1| - 0.025 14.0 1.4 1.9 7.9 0.1 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|386001152|ref|YP_005919451.1| - 0.037 14.5 0.3 5.6 7.4 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein UPF0079 PF02367.12 gi|386001152|ref|YP_005919451.1| - 0.047 13.3 1.2 1.7 8.2 0.0 2.6 3 0 0 3 3 2 0 Uncharacterised P-loop hydrolase UPF0079 ABC_ATPase PF09818.4 gi|386001152|ref|YP_005919451.1| - 0.088 11.3 4.5 2.8 6.4 0.2 3.2 3 1 0 3 3 3 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|386001152|ref|YP_005919451.1| - 0.093 12.9 0.2 41 4.3 0.0 3.6 3 1 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) DUF927 PF06048.6 gi|386001152|ref|YP_005919451.1| - 0.13 11.5 0.8 11 5.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF927) Rad17 PF03215.10 gi|386001152|ref|YP_005919451.1| - 0.14 10.8 0.1 1.7 7.2 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein MMR_HSR1 PF01926.18 gi|386001152|ref|YP_005919451.1| - 0.16 11.9 1.1 3.8 7.5 0.0 3.2 4 0 0 4 4 3 0 50S ribosome-binding GTPase Pox_A32 PF04665.7 gi|386001152|ref|YP_005919451.1| - 0.21 10.8 3.0 7.7 5.7 0.1 2.9 3 0 0 3 3 3 0 Poxvirus A32 protein cobW PF02492.14 gi|386001152|ref|YP_005919451.1| - 0.91 8.9 4.1 3.5 7.0 0.1 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF87 PF01935.12 gi|386001152|ref|YP_005919451.1| - 2.5 7.8 4.7 5.1 6.8 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF87 tRNA-synt_1g PF09334.6 gi|386001153|ref|YP_005919452.1| - 1.7e-140 468.1 0.0 2e-140 467.8 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|386001153|ref|YP_005919452.1| - 2.6e-26 91.3 0.0 4.4e-26 90.5 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|386001153|ref|YP_005919452.1| - 3.8e-17 61.5 0.0 1.1e-07 30.2 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|386001153|ref|YP_005919452.1| - 5.8e-12 45.6 0.0 9.4e-12 44.9 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|386001153|ref|YP_005919452.1| - 2.9e-08 33.2 0.0 0.00038 19.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|386001153|ref|YP_005919452.1| - 0.0023 16.6 0.0 0.52 8.9 0.0 2.4 3 0 0 3 3 3 2 tRNA synthetases class I (K) DZR PF12773.2 gi|386001153|ref|YP_005919452.1| - 0.34 10.7 7.4 1.1 9.1 5.2 1.9 1 1 0 1 1 1 0 Double zinc ribbon DUF1724 PF08350.5 gi|386001154|ref|YP_005919453.1| - 1.6e-15 56.3 0.0 3.3e-15 55.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) Response_reg PF00072.19 gi|386001154|ref|YP_005919453.1| - 8.2e-12 45.1 0.0 1.4e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain CHASE4 PF05228.8 gi|386001155|ref|YP_005919454.1| - 7.8e-34 116.5 0.0 2.2e-33 115.1 0.0 1.8 1 0 0 1 1 1 1 CHASE4 domain HATPase_c PF02518.21 gi|386001155|ref|YP_005919454.1| - 1.8e-26 92.0 0.0 3.3e-26 91.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|386001155|ref|YP_005919454.1| - 1.7e-17 63.4 0.1 4.4e-17 62.0 0.0 1.8 2 0 0 2 2 2 1 PAS fold GAF PF01590.21 gi|386001155|ref|YP_005919454.1| - 2.6e-15 56.8 0.0 6.4e-15 55.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|386001155|ref|YP_005919454.1| - 1e-12 48.3 0.0 2.4e-12 47.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|386001155|ref|YP_005919454.1| - 2.6e-12 46.5 0.3 2.6e-10 40.1 0.0 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.20 gi|386001155|ref|YP_005919454.1| - 1.5e-10 41.0 1.2 2.2e-09 37.3 0.2 2.6 2 0 0 2 2 2 1 HAMP domain PAS PF00989.19 gi|386001155|ref|YP_005919454.1| - 3.3e-09 36.5 0.0 9.6e-09 35.0 0.0 1.9 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.1 gi|386001155|ref|YP_005919454.1| - 4.7e-08 33.1 0.0 1.3e-07 31.7 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|386001155|ref|YP_005919454.1| - 7.2e-07 29.7 0.1 0.00012 22.5 0.0 2.9 3 0 0 3 3 2 1 GAF domain HATPase_c_2 PF13581.1 gi|386001155|ref|YP_005919454.1| - 8.4e-06 25.5 0.0 1.6e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|386001155|ref|YP_005919454.1| - 1.4e-05 24.7 0.0 2.7e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.1 gi|386001155|ref|YP_005919454.1| - 2.1e-05 24.1 0.0 8e-05 22.3 0.0 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|386001155|ref|YP_005919454.1| - 0.00014 21.4 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOOK PF05622.7 gi|386001155|ref|YP_005919454.1| - 0.21 9.3 0.0 0.29 8.8 0.0 1.1 1 0 0 1 1 1 0 HOOK protein Response_reg PF00072.19 gi|386001156|ref|YP_005919455.1| - 2.6e-20 72.4 0.0 3.1e-20 72.2 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Fer4_5 PF12801.2 gi|386001157|ref|YP_005919456.1| - 2.2e-13 49.7 2.5 2.2e-13 49.7 1.7 4.4 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386001157|ref|YP_005919456.1| - 3.5e-13 49.7 29.4 5.2e-07 29.9 8.6 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386001157|ref|YP_005919456.1| - 5e-11 42.6 11.9 5e-10 39.4 6.9 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386001157|ref|YP_005919456.1| - 7.5e-11 41.8 23.8 2.1e-08 34.0 7.6 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386001157|ref|YP_005919456.1| - 5.7e-09 35.2 22.2 0.00012 21.5 1.5 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|386001157|ref|YP_005919456.1| - 1.7e-08 33.8 14.4 1.5e-05 24.5 1.1 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386001157|ref|YP_005919456.1| - 2.4e-08 33.6 21.8 1.2e-07 31.4 7.8 2.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386001157|ref|YP_005919456.1| - 6.7e-07 28.9 19.6 2.6e-05 23.8 0.9 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|386001157|ref|YP_005919456.1| - 1.5e-06 28.4 11.9 0.0042 17.3 2.9 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386001157|ref|YP_005919456.1| - 8.2e-06 25.7 20.0 0.0092 16.2 1.2 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386001157|ref|YP_005919456.1| - 1e-05 26.1 7.2 0.013 16.2 0.2 2.9 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|386001157|ref|YP_005919456.1| - 1.4e-05 24.8 22.5 0.00027 20.7 7.5 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386001157|ref|YP_005919456.1| - 3.3e-05 24.2 20.9 0.02 15.3 5.0 3.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386001157|ref|YP_005919456.1| - 0.0017 18.8 19.4 0.004 17.6 4.4 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain MscS_TM PF12794.2 gi|386001157|ref|YP_005919456.1| - 0.0019 16.8 2.1 0.0032 16.1 1.4 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel inner membrane domain 1 Fer4_15 PF13459.1 gi|386001157|ref|YP_005919456.1| - 0.0032 17.9 13.8 0.095 13.2 1.8 2.8 2 1 1 3 3 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|386001157|ref|YP_005919456.1| - 0.25 11.7 17.9 0.16 12.4 1.1 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|386001157|ref|YP_005919456.1| - 2.5 7.7 6.8 0.82 9.3 0.2 2.6 2 1 1 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AAA_21 PF13304.1 gi|386001158|ref|YP_005919457.1| - 5.8e-39 134.7 0.0 7.2e-39 134.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|386001158|ref|YP_005919457.1| - 3e-12 46.2 0.0 8.5e-11 41.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|386001158|ref|YP_005919457.1| - 7.1e-11 41.7 0.0 0.00018 20.7 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|386001158|ref|YP_005919457.1| - 1.9e-06 28.3 0.1 3.2e-06 27.5 0.1 1.6 1 1 0 1 1 1 1 AAA domain DUF2813 PF11398.3 gi|386001158|ref|YP_005919457.1| - 3.9e-06 26.2 0.3 0.044 12.8 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_29 PF13555.1 gi|386001158|ref|YP_005919457.1| - 0.00013 21.4 0.0 0.00026 20.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|386001158|ref|YP_005919457.1| - 0.0013 19.0 0.0 0.0039 17.4 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_10 PF12846.2 gi|386001158|ref|YP_005919457.1| - 0.037 13.4 0.0 0.9 8.9 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain Peptidase_S9_N PF02897.10 gi|386001158|ref|YP_005919457.1| - 0.072 11.6 0.2 0.16 10.4 0.0 1.6 2 0 0 2 2 2 0 Prolyl oligopeptidase, N-terminal beta-propeller domain TruB_N PF01509.13 gi|386001159|ref|YP_005919458.1| - 1.3e-23 83.8 0.1 1.4e-14 54.4 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|386001159|ref|YP_005919458.1| - 1.4e-20 72.9 0.1 3e-19 68.7 0.0 2.3 2 0 0 2 2 2 1 DKCLD (NUC011) domain PUA PF01472.15 gi|386001159|ref|YP_005919458.1| - 1.7e-18 66.0 1.0 3e-18 65.2 0.7 1.4 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.1 gi|386001160|ref|YP_005919459.1| - 2.2e-21 76.5 1.1 6.7e-20 71.7 0.8 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|386001160|ref|YP_005919459.1| - 1.5e-11 44.7 0.3 2.2e-11 44.1 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|386001160|ref|YP_005919459.1| - 6.2e-10 39.9 2.0 1.2e-09 39.0 1.4 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|386001160|ref|YP_005919459.1| - 4.5e-06 26.7 0.5 1.8e-05 24.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|386001160|ref|YP_005919459.1| - 9.7e-06 25.1 0.2 1.2e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 Cytidylate kinase SKI PF01202.17 gi|386001160|ref|YP_005919459.1| - 0.0007 19.4 0.6 0.0029 17.5 0.4 1.8 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.17 gi|386001160|ref|YP_005919459.1| - 0.0036 17.1 0.3 0.02 14.8 0.0 1.9 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.1 gi|386001160|ref|YP_005919459.1| - 0.012 15.5 0.5 0.12 12.2 0.3 2.1 1 1 0 1 1 1 0 AAA domain DUF106 PF01956.11 gi|386001161|ref|YP_005919460.1| - 8.4e-43 145.8 1.9 1.1e-42 145.4 1.3 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF106 DUF4199 PF13858.1 gi|386001161|ref|YP_005919460.1| - 0.019 14.9 4.5 0.24 11.3 1.0 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF4199) SecY PF00344.15 gi|386001162|ref|YP_005919461.1| - 1.4e-96 323.5 24.2 1.8e-96 323.1 16.8 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|386001162|ref|YP_005919461.1| - 2.6e-09 36.4 4.2 6.7e-09 35.1 2.9 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|386001163|ref|YP_005919462.1| - 4.3e-25 88.5 3.4 5.8e-25 88.1 2.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|386001164|ref|YP_005919463.1| - 5.1e-23 80.4 1.4 5.2e-23 80.3 0.1 1.7 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e CBS PF00571.23 gi|386001164|ref|YP_005919463.1| - 0.035 13.8 0.0 0.1 12.4 0.0 1.8 1 0 0 1 1 1 0 CBS domain UPF0052 PF01933.13 gi|386001164|ref|YP_005919463.1| - 0.13 11.5 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0052 Ribosomal_S5 PF00333.15 gi|386001165|ref|YP_005919464.1| - 8.9e-28 95.8 1.9 2.1e-27 94.6 1.3 1.7 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|386001165|ref|YP_005919464.1| - 1.1e-25 88.7 1.5 1.8e-25 88.0 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|386001166|ref|YP_005919465.1| - 1e-25 90.2 0.0 1.2e-25 90.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|386001167|ref|YP_005919466.1| - 5.6e-56 188.4 7.7 6.2e-56 188.2 5.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e MEDS PF14417.1 gi|386001167|ref|YP_005919466.1| - 0.099 11.7 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Ribosomal_L32e PF01655.13 gi|386001168|ref|YP_005919467.1| - 1.7e-36 124.5 0.2 2.2e-36 124.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|386001169|ref|YP_005919468.1| - 1.4e-25 89.6 1.1 9.1e-13 48.5 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.14 gi|386001170|ref|YP_005919469.1| - 3.1e-22 78.7 0.0 4.2e-22 78.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|386001171|ref|YP_005919470.1| - 6.9e-20 70.1 3.9 7.2e-20 70.1 2.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-P11 PF03854.9 gi|386001171|ref|YP_005919470.1| - 0.027 13.9 0.3 0.035 13.5 0.2 1.2 1 0 0 1 1 1 0 P-11 zinc finger DZR PF12773.2 gi|386001171|ref|YP_005919470.1| - 0.032 14.0 0.9 0.054 13.3 0.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L37ae PF01780.14 gi|386001171|ref|YP_005919470.1| - 0.04 13.7 0.3 0.043 13.6 0.2 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF2318 PF10080.4 gi|386001171|ref|YP_005919470.1| - 0.084 12.6 0.1 0.084 12.6 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) A2L_zn_ribbon PF08792.5 gi|386001171|ref|YP_005919470.1| - 0.09 12.2 0.4 0.14 11.6 0.3 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-HYPF PF07503.7 gi|386001171|ref|YP_005919470.1| - 0.14 11.5 2.1 1.6 8.2 0.1 2.1 2 0 0 2 2 2 0 HypF finger Zn_Tnp_IS1595 PF12760.2 gi|386001171|ref|YP_005919470.1| - 0.56 10.0 3.6 0.67 9.8 2.5 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Thrombin_light PF09396.5 gi|386001171|ref|YP_005919470.1| - 0.76 9.4 2.6 2 8.0 1.8 1.7 1 1 0 1 1 1 0 Thrombin light chain Rsm1 PF08600.5 gi|386001171|ref|YP_005919470.1| - 0.76 9.6 4.3 5.8 6.8 0.2 2.0 1 1 1 2 2 2 0 Rsm1-like Ribosomal_L5_C PF00673.16 gi|386001172|ref|YP_005919471.1| - 1.8e-25 88.4 0.0 2.7e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|386001172|ref|YP_005919471.1| - 3.9e-12 45.7 0.0 6e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|386001173|ref|YP_005919472.1| - 2.4e-24 84.8 0.0 4.2e-24 84.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.20 gi|386001173|ref|YP_005919472.1| - 1.1e-06 27.9 0.3 2.3e-06 26.9 0.2 1.6 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|386001173|ref|YP_005919472.1| - 0.00059 19.4 0.9 0.002 17.7 0.6 2.0 1 0 0 1 1 1 1 KOW motif S4_2 PF13275.1 gi|386001173|ref|YP_005919472.1| - 0.02 14.4 0.1 0.076 12.6 0.0 2.0 2 0 0 2 2 2 0 S4 domain DUF515 PF04415.7 gi|386001173|ref|YP_005919472.1| - 0.051 11.8 0.0 0.069 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) KOW PF00467.24 gi|386001174|ref|YP_005919473.1| - 2.2e-05 23.9 0.1 4.2e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.14 gi|386001175|ref|YP_005919474.1| - 1e-37 128.5 0.4 1.2e-37 128.4 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|386001176|ref|YP_005919475.1| - 4.6e-28 97.0 3.2 5.7e-28 96.7 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|386001177|ref|YP_005919476.1| - 4.7e-31 106.2 0.1 5.3e-31 106.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|386001178|ref|YP_005919477.1| - 7.5e-21 73.5 0.1 8.3e-21 73.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein DUF3213 PF11491.3 gi|386001178|ref|YP_005919477.1| - 0.045 13.6 0.1 0.066 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3213) MRP-L47 PF06984.8 gi|386001178|ref|YP_005919477.1| - 0.049 13.5 0.2 0.087 12.7 0.1 1.6 1 1 0 1 1 1 0 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) Radical_SAM PF04055.16 gi|386001178|ref|YP_005919477.1| - 0.073 13.2 0.1 0.079 13.1 0.1 1.1 1 0 0 1 1 1 0 Radical SAM superfamily Fer4_14 PF13394.1 gi|386001178|ref|YP_005919477.1| - 0.094 12.7 0.0 0.1 12.5 0.0 1.0 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF1192 PF06698.6 gi|386001178|ref|YP_005919477.1| - 0.13 12.0 0.3 0.13 12.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Ribosomal_S3_C PF00189.15 gi|386001179|ref|YP_005919478.1| - 2.5e-16 59.6 0.1 5.4e-16 58.5 0.1 1.5 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|386001179|ref|YP_005919478.1| - 2.6e-14 52.5 0.5 6e-14 51.3 0.0 1.8 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|386001179|ref|YP_005919478.1| - 0.00021 20.8 0.2 0.0076 15.8 0.0 2.6 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|386001179|ref|YP_005919478.1| - 0.073 12.7 0.3 0.073 12.7 0.2 2.2 2 0 0 2 2 2 0 KH domain KH_3 PF13014.1 gi|386001179|ref|YP_005919478.1| - 0.43 10.2 2.7 0.63 9.7 0.3 2.3 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|386001180|ref|YP_005919479.1| - 1.2e-32 112.0 0.1 1.4e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|386001181|ref|YP_005919480.1| - 1.6e-27 94.9 0.2 2.4e-27 94.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|386001182|ref|YP_005919481.1| - 1.4e-44 151.0 0.6 1.9e-44 150.6 0.4 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|386001182|ref|YP_005919481.1| - 2.9e-12 46.3 0.0 6.6e-12 45.2 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|386001183|ref|YP_005919482.1| - 8.9e-12 44.7 0.2 1.2e-11 44.3 0.1 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 RepC PF06504.6 gi|386001183|ref|YP_005919482.1| - 0.11 11.4 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Replication protein C (RepC) P2 PF07194.6 gi|386001183|ref|YP_005919482.1| - 0.13 12.0 0.5 0.18 11.6 0.3 1.2 1 0 0 1 1 1 0 P2 response regulator binding domain Ribosomal_L4 PF00573.17 gi|386001184|ref|YP_005919483.1| - 1.1e-46 158.6 0.2 1.3e-46 158.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|386001185|ref|YP_005919484.1| - 9.9e-75 251.3 0.0 1.1e-74 251.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|386001186|ref|YP_005919485.1| - 9.3e-50 169.6 0.0 1.2e-49 169.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|386001186|ref|YP_005919485.1| - 0.13 12.1 0.0 0.38 10.6 0.0 1.7 1 0 0 1 1 1 0 SpoU rRNA Methylase family TIR_2 PF13676.1 gi|386001187|ref|YP_005919486.1| - 2.3e-14 53.3 0.0 3e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 TIR domain Nuc_deoxyrib_tr PF05014.10 gi|386001187|ref|YP_005919486.1| - 0.012 15.4 0.0 0.019 14.8 0.0 1.5 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Acetyltransf_4 PF13420.1 gi|386001188|ref|YP_005919487.1| - 2.6e-17 63.1 0.0 2.9e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|386001188|ref|YP_005919487.1| - 1.7e-14 53.5 0.1 6.2e-14 51.7 0.0 1.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|386001188|ref|YP_005919487.1| - 6.4e-10 39.3 0.0 1.2e-09 38.4 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386001188|ref|YP_005919487.1| - 4.5e-07 29.5 0.0 7.3e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|386001188|ref|YP_005919487.1| - 1.7e-06 28.0 0.0 4.9e-06 26.6 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|386001188|ref|YP_005919487.1| - 6.6e-06 26.0 0.0 8.5e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|386001188|ref|YP_005919487.1| - 8e-06 25.9 0.0 9.9e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|386001188|ref|YP_005919487.1| - 0.013 15.3 0.0 0.029 14.2 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|386001188|ref|YP_005919487.1| - 0.015 15.2 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase TRAM PF01938.15 gi|386001189|ref|YP_005919488.1| - 4.3e-12 45.6 0.8 4.9e-12 45.4 0.5 1.1 1 0 0 1 1 1 1 TRAM domain DUF982 PF06169.7 gi|386001190|ref|YP_005919489.1| - 0.13 12.0 0.1 0.21 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF982) 4HBT PF03061.17 gi|386001191|ref|YP_005919490.1| - 1.5e-14 53.8 0.1 2.1e-14 53.4 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|386001191|ref|YP_005919490.1| - 1.5e-06 28.1 0.1 2.1e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|386001191|ref|YP_005919490.1| - 0.00081 19.2 0.0 0.001 18.8 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acetyltransf_1 PF00583.19 gi|386001192|ref|YP_005919491.1| - 8.4e-14 51.3 0.1 1.6e-13 50.4 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|386001192|ref|YP_005919491.1| - 4.2e-08 33.2 0.0 6.5e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386001192|ref|YP_005919491.1| - 3.1e-07 30.0 0.0 4.8e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|386001192|ref|YP_005919491.1| - 3.3e-05 23.7 0.0 7.8e-05 22.5 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|386001192|ref|YP_005919491.1| - 0.00011 22.2 0.1 0.00015 21.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|386001192|ref|YP_005919491.1| - 0.00021 21.5 0.1 0.00027 21.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|386001192|ref|YP_005919491.1| - 0.11 12.3 0.1 0.42 10.5 0.0 1.9 1 1 1 2 2 2 0 GCN5-related N-acetyl-transferase HTH_20 PF12840.2 gi|386001193|ref|YP_005919492.1| - 2e-06 27.4 0.3 2.9e-06 26.9 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|386001193|ref|YP_005919492.1| - 0.00092 18.7 0.1 0.011 15.3 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_5 PF01022.15 gi|386001193|ref|YP_005919492.1| - 0.011 15.4 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|386001193|ref|YP_005919492.1| - 0.021 14.8 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|386001193|ref|YP_005919492.1| - 0.031 13.7 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|386001193|ref|YP_005919492.1| - 0.046 13.2 0.3 0.094 12.2 0.1 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|386001193|ref|YP_005919492.1| - 0.068 12.5 0.0 0.12 11.8 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|386001193|ref|YP_005919492.1| - 0.083 12.7 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix CDP-OH_P_transf PF01066.16 gi|386001194|ref|YP_005919493.1| - 4.3e-15 55.8 10.1 9.9e-15 54.6 7.0 1.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF1212 PF06738.7 gi|386001194|ref|YP_005919493.1| - 1.3 8.4 5.4 0.45 9.9 0.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1212) Aminotran_1_2 PF00155.16 gi|386001195|ref|YP_005919494.1| - 5.8e-71 239.3 0.0 6.6e-71 239.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|386001195|ref|YP_005919494.1| - 2.4e-09 36.7 0.0 3.8e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|386001195|ref|YP_005919494.1| - 9.9e-07 27.8 0.0 1.7e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|386001195|ref|YP_005919494.1| - 0.00033 19.0 0.0 0.00065 18.0 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|386001195|ref|YP_005919494.1| - 0.00055 19.1 0.0 0.00093 18.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Alliinase_C PF04864.8 gi|386001195|ref|YP_005919494.1| - 0.026 13.2 0.0 0.068 11.8 0.0 1.6 2 0 0 2 2 2 0 Allinase AsnC_trans_reg PF01037.16 gi|386001196|ref|YP_005919495.1| - 2.3e-15 56.0 0.2 4.2e-15 55.2 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|386001196|ref|YP_005919495.1| - 4e-09 35.7 0.0 8.5e-09 34.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|386001196|ref|YP_005919495.1| - 0.00018 21.2 0.0 0.00031 20.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|386001196|ref|YP_005919495.1| - 0.00025 20.4 0.0 0.00072 19.0 0.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|386001196|ref|YP_005919495.1| - 0.0029 17.2 0.1 0.0071 16.0 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|386001196|ref|YP_005919495.1| - 0.0044 16.5 0.0 0.024 14.1 0.0 2.1 2 1 0 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_34 PF13601.1 gi|386001196|ref|YP_005919495.1| - 0.052 13.5 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|386001196|ref|YP_005919495.1| - 0.068 12.8 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|386001196|ref|YP_005919495.1| - 0.069 13.4 0.0 0.37 11.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|386001196|ref|YP_005919495.1| - 0.097 12.2 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain ATP_bind_3 PF01171.15 gi|386001198|ref|YP_005919497.1| - 1.4e-11 44.2 0.0 5.5e-11 42.2 0.0 1.8 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|386001198|ref|YP_005919497.1| - 1.2e-06 27.3 0.0 1.5e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|386001198|ref|YP_005919497.1| - 0.0008 18.9 0.1 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|386001198|ref|YP_005919497.1| - 0.13 12.0 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family RecR PF02132.10 gi|386001198|ref|YP_005919497.1| - 0.18 11.2 4.5 0.14 11.5 0.6 2.6 2 0 0 2 2 2 0 RecR protein eRF1_1 PF03463.10 gi|386001199|ref|YP_005919498.1| - 1.8e-28 98.7 0.0 2.6e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|386001199|ref|YP_005919498.1| - 6e-20 71.6 0.0 3e-19 69.3 0.0 2.2 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|386001199|ref|YP_005919498.1| - 1.1e-15 58.1 0.0 1.5e-15 57.6 0.0 1.2 1 0 0 1 1 1 1 eRF1 domain 2 Topoisom_bac PF01131.15 gi|386001200|ref|YP_005919499.1| - 6.8e-111 370.9 0.0 9.1e-111 370.5 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|386001200|ref|YP_005919499.1| - 5e-15 55.2 0.1 2e-14 53.3 0.0 2.1 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|386001200|ref|YP_005919499.1| - 4.5e-13 48.4 3.2 1.3e-12 47.0 0.2 2.3 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.1 gi|386001200|ref|YP_005919499.1| - 2.1e-12 46.9 3.7 1.1e-11 44.6 1.9 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|386001200|ref|YP_005919499.1| - 0.0032 17.0 0.3 0.0094 15.6 0.2 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF4332 PF14229.1 gi|386001200|ref|YP_005919499.1| - 0.004 17.1 0.1 0.0092 15.9 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|386001200|ref|YP_005919499.1| - 0.0098 15.7 0.1 0.022 14.6 0.1 1.5 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|386001200|ref|YP_005919499.1| - 0.042 13.9 0.7 0.093 12.8 0.1 2.0 2 0 0 2 2 2 0 IMS family HHH motif MCR_beta PF02241.13 gi|386001201|ref|YP_005919500.1| - 3.1e-127 423.0 7.7 5.2e-127 422.3 5.3 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|386001201|ref|YP_005919500.1| - 2.5e-75 251.9 2.4 5.3e-75 250.8 1.7 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.9 gi|386001202|ref|YP_005919501.1| - 2.4e-44 150.5 0.0 2.7e-44 150.4 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_gamma PF02240.11 gi|386001203|ref|YP_005919502.1| - 4.6e-96 320.7 0.0 5.2e-96 320.5 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.10 gi|386001204|ref|YP_005919503.1| - 5.1e-137 455.3 0.1 1e-136 454.4 0.1 1.4 2 0 0 2 2 2 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|386001204|ref|YP_005919503.1| - 1.3e-60 203.0 2.8 2.4e-60 202.1 2.0 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain Atg31 PF09795.4 gi|386001204|ref|YP_005919503.1| - 0.077 12.6 0.2 0.16 11.6 0.1 1.5 1 1 0 1 1 1 0 Autophagy-related protein 31 MCR_beta_N PF02783.10 gi|386001204|ref|YP_005919503.1| - 0.081 12.3 0.1 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF1863 PF08937.6 gi|386001205|ref|YP_005919504.1| - 1.9e-11 44.1 0.0 2.4e-11 43.8 0.0 1.1 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) TIR_2 PF13676.1 gi|386001205|ref|YP_005919504.1| - 8.3e-05 22.6 0.1 0.00012 22.2 0.1 1.3 1 1 0 1 1 1 1 TIR domain QueC PF06508.8 gi|386001206|ref|YP_005919505.1| - 2e-26 92.5 0.0 4.1e-26 91.5 0.0 1.4 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|386001206|ref|YP_005919505.1| - 0.0044 16.5 0.0 1.2 8.5 0.0 2.3 2 0 0 2 2 2 2 PP-loop family PAPS_reduct PF01507.14 gi|386001206|ref|YP_005919505.1| - 0.0087 15.8 0.0 2.8 7.7 0.0 2.3 2 0 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.9 gi|386001206|ref|YP_005919505.1| - 0.018 14.4 0.0 0.42 10.0 0.0 2.5 2 1 1 3 3 3 0 Thiamine biosynthesis protein (ThiI) BmKX PF09132.5 gi|386001206|ref|YP_005919505.1| - 3.1 7.7 5.4 5.8 6.8 0.1 3.1 4 0 0 4 4 4 0 BmKX LMWPc PF01451.16 gi|386001207|ref|YP_005919506.1| - 2.2e-20 73.4 0.0 2.5e-20 73.2 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Radical_SAM PF04055.16 gi|386001208|ref|YP_005919507.1| - 8.6e-30 104.0 0.0 1.6e-29 103.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|386001208|ref|YP_005919507.1| - 6.1e-08 32.5 1.7 4.1e-06 26.6 0.5 3.6 3 1 0 3 3 3 1 B12 binding domain DUF512 PF04459.7 gi|386001209|ref|YP_005919508.1| - 7.6e-24 83.9 0.0 1e-23 83.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|386001209|ref|YP_005919508.1| - 2e-12 47.6 4.0 3.9e-11 43.3 1.5 3.1 2 1 1 3 3 3 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|386001210|ref|YP_005919509.1| - 7e-15 55.5 0.1 1.5e-13 51.2 0.0 2.6 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|386001210|ref|YP_005919509.1| - 4.5e-06 26.6 0.0 1.2e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|386001210|ref|YP_005919509.1| - 5.8e-06 26.5 0.8 5.8e-06 26.5 0.6 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|386001210|ref|YP_005919509.1| - 0.00041 20.4 0.1 0.0016 18.5 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Na_Ca_ex PF01699.19 gi|386001211|ref|YP_005919510.1| - 2.3e-51 173.0 34.6 2.2e-26 92.1 6.8 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF4501 PF14946.1 gi|386001211|ref|YP_005919510.1| - 1.2 8.6 2.7 0.62 9.5 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4501) SMC_N PF02463.14 gi|386001212|ref|YP_005919511.1| - 2.8e-71 239.2 0.0 3.5e-71 238.9 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|386001212|ref|YP_005919511.1| - 2.2e-28 98.6 0.0 6.3e-28 97.1 0.0 1.9 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|386001212|ref|YP_005919511.1| - 7.2e-16 59.1 0.0 7.2e-16 59.1 0.0 4.8 2 2 2 4 4 2 1 AAA domain AAA_21 PF13304.1 gi|386001212|ref|YP_005919511.1| - 1.1e-12 48.5 1.2 1.3e-06 28.5 0.0 3.4 4 1 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|386001212|ref|YP_005919511.1| - 9.2e-08 31.5 0.0 1.9e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|386001212|ref|YP_005919511.1| - 6.3e-07 28.7 0.0 4.8e-05 22.5 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain BLOC1_2 PF10046.4 gi|386001212|ref|YP_005919511.1| - 0.00065 19.8 11.8 0.22 11.6 0.1 5.7 5 2 1 6 6 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 ABC_tran PF00005.22 gi|386001212|ref|YP_005919511.1| - 0.099 12.9 7.3 0.79 10.0 0.0 4.7 4 2 0 4 4 4 0 ABC transporter AAA_13 PF13166.1 gi|386001212|ref|YP_005919511.1| - 0.15 10.4 37.1 0.008 14.6 1.3 4.7 3 2 2 6 6 6 0 AAA domain IncA PF04156.9 gi|386001212|ref|YP_005919511.1| - 0.2 11.2 97.5 0.025 14.1 6.0 7.9 2 2 4 6 6 6 0 IncA protein Reo_sigmaC PF04582.7 gi|386001212|ref|YP_005919511.1| - 0.87 8.7 9.4 14 4.7 0.1 4.6 2 2 2 5 5 5 0 Reovirus sigma C capsid protein ScpA_ScpB PF02616.9 gi|386001213|ref|YP_005919512.1| - 8.3e-27 94.3 0.0 4.3e-26 91.9 0.0 1.9 1 1 0 1 1 1 1 ScpA/B protein DUF387 PF04079.11 gi|386001214|ref|YP_005919513.1| - 6.7e-36 123.0 0.0 1.4e-35 122.0 0.0 1.5 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_20 PF12840.2 gi|386001214|ref|YP_005919513.1| - 0.00017 21.3 1.2 0.17 11.7 0.1 2.9 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|386001214|ref|YP_005919513.1| - 0.012 15.3 0.3 0.83 9.3 0.1 2.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|386001214|ref|YP_005919513.1| - 0.026 14.1 4.2 4.1 7.1 1.0 3.7 2 1 0 2 2 2 0 MarR family HTH_IclR PF09339.5 gi|386001214|ref|YP_005919513.1| - 0.39 10.3 3.4 0.43 10.2 0.1 2.9 4 0 0 4 4 4 0 IclR helix-turn-helix domain HD PF01966.17 gi|386001215|ref|YP_005919514.1| - 4.8e-09 36.2 0.3 7.5e-09 35.6 0.2 1.3 1 0 0 1 1 1 1 HD domain Glyco_hydro_15 PF00723.16 gi|386001216|ref|YP_005919515.1| - 0.00011 20.8 0.3 0.12 10.8 0.0 3.4 2 1 0 3 3 3 2 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|386001216|ref|YP_005919515.1| - 0.00053 18.8 0.0 0.00088 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF608 I-set PF07679.11 gi|386001217|ref|YP_005919516.1| - 3.2e-07 30.0 0.1 1.7e-06 27.7 0.0 2.2 1 1 0 1 1 1 1 Immunoglobulin I-set domain ig PF00047.20 gi|386001217|ref|YP_005919516.1| - 3.8e-07 30.1 0.1 1.3e-06 28.4 0.1 2.0 1 0 0 1 1 1 1 Immunoglobulin domain Ig_2 PF13895.1 gi|386001217|ref|YP_005919516.1| - 4e-06 26.8 0.1 1e-05 25.5 0.1 1.6 1 0 0 1 1 1 1 Immunoglobulin domain Ig_3 PF13927.1 gi|386001217|ref|YP_005919516.1| - 3.8e-05 24.1 0.5 8.5e-05 22.9 0.3 1.5 1 0 0 1 1 1 1 Immunoglobulin domain V-set PF07686.12 gi|386001217|ref|YP_005919516.1| - 0.00084 19.2 0.5 0.015 15.2 0.2 2.6 1 1 0 1 1 1 1 Immunoglobulin V-set domain Peptidase_C25 PF01364.13 gi|386001218|ref|YP_005919517.1| - 9e-32 110.4 0.2 1.5e-31 109.7 0.1 1.4 1 0 0 1 1 1 1 Peptidase family C25 CW_binding_2 PF04122.7 gi|386001218|ref|YP_005919517.1| - 4.7e-06 26.7 0.1 0.00015 21.8 0.0 2.6 2 0 0 2 2 2 1 Putative cell wall binding repeat 2 DUF187 PF02638.10 gi|386001218|ref|YP_005919517.1| - 0.0024 16.7 0.0 0.0049 15.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase like GH101 DUF11 PF01345.13 gi|386001218|ref|YP_005919517.1| - 0.022 14.7 0.0 0.16 12.0 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function DUF11 VERL PF11386.3 gi|386001218|ref|YP_005919517.1| - 0.15 12.0 0.8 20 5.2 0.0 3.1 3 0 0 3 3 3 0 Vitelline envelope receptor for lysin CW_binding_2 PF04122.7 gi|386001219|ref|YP_005919518.1| - 1.1e-10 41.5 0.1 0.00014 21.9 0.0 2.6 2 0 0 2 2 2 2 Putative cell wall binding repeat 2 NPCBM_assoc PF10633.4 gi|386001219|ref|YP_005919518.1| - 0.0028 17.6 0.3 0.45 10.5 0.0 3.3 3 1 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase GTP_EFTU_D3 PF03143.12 gi|386001219|ref|YP_005919518.1| - 0.084 13.0 0.0 0.22 11.7 0.0 1.7 1 0 0 1 1 1 0 Elongation factor Tu C-terminal domain DUF2240 PF09999.4 gi|386001221|ref|YP_005919520.1| - 2.4e-42 143.7 0.1 2.7e-42 143.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) SelB-wing_2 PF09106.6 gi|386001221|ref|YP_005919520.1| - 0.039 13.8 0.1 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 Elongation factor SelB, winged helix SIMPL PF04402.9 gi|386001223|ref|YP_005919522.1| - 1.4e-21 77.3 2.6 1.9e-21 76.9 1.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Bactofilin PF04519.8 gi|386001224|ref|YP_005919523.1| - 0.21 11.6 2.7 0.37 10.8 1.9 1.4 1 0 0 1 1 1 0 Polymer-forming cytoskeletal DUF342 PF03961.8 gi|386001224|ref|YP_005919523.1| - 0.35 9.2 2.0 0.43 8.9 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF2101 PF09874.4 gi|386001224|ref|YP_005919523.1| - 7.5 5.9 5.9 3.1 7.2 2.1 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2101) Tubulin PF00091.20 gi|386001225|ref|YP_005919524.1| - 2.3e-37 128.9 0.1 6.1e-37 127.5 0.0 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|386001225|ref|YP_005919524.1| - 5.7e-33 112.8 0.8 1.4e-32 111.5 0.5 1.7 1 0 0 1 1 1 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|386001225|ref|YP_005919524.1| - 0.028 14.2 0.2 0.1 12.4 0.2 1.9 1 0 0 1 1 1 0 ThiF family Tubulin_2 PF13809.1 gi|386001225|ref|YP_005919524.1| - 0.061 12.2 1.0 0.14 11.0 0.1 1.9 2 0 0 2 2 2 0 Tubulin like DUF1699 PF08004.6 gi|386001226|ref|YP_005919525.1| - 2e-07 30.5 0.0 2.4e-07 30.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_24 PF13412.1 gi|386001227|ref|YP_005919526.1| - 1.2e-06 27.7 0.1 1.8e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|386001227|ref|YP_005919526.1| - 0.00039 20.0 0.1 0.00061 19.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|386001227|ref|YP_005919526.1| - 0.0007 19.3 0.1 0.0012 18.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|386001227|ref|YP_005919526.1| - 0.00073 19.4 0.1 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|386001227|ref|YP_005919526.1| - 0.0013 18.7 0.1 0.0021 18.1 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator FaeA PF04703.7 gi|386001227|ref|YP_005919526.1| - 0.0019 18.3 0.0 0.0031 17.6 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein GntR PF00392.16 gi|386001227|ref|YP_005919526.1| - 0.0032 16.8 0.1 0.005 16.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MerR PF00376.18 gi|386001227|ref|YP_005919526.1| - 0.0044 16.5 0.0 0.89 9.1 0.0 2.3 2 0 0 2 2 2 1 MerR family regulatory protein HTH_5 PF01022.15 gi|386001227|ref|YP_005919526.1| - 0.0046 16.5 0.2 0.0083 15.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|386001227|ref|YP_005919526.1| - 0.0068 16.1 0.1 0.02 14.6 0.1 1.9 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|386001227|ref|YP_005919526.1| - 0.015 15.6 0.0 0.024 14.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|386001227|ref|YP_005919526.1| - 0.017 14.7 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|386001227|ref|YP_005919526.1| - 0.043 13.4 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4423 PF14394.1 gi|386001227|ref|YP_005919526.1| - 0.057 12.9 0.0 0.13 11.7 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) RepL PF05732.6 gi|386001227|ref|YP_005919526.1| - 0.089 12.0 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Sec2p PF06428.6 gi|386001227|ref|YP_005919526.1| - 0.1 12.4 0.1 3.6 7.5 0.0 2.2 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p DUF2513 PF10711.4 gi|386001227|ref|YP_005919526.1| - 0.1 12.6 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) RPA_C PF08784.6 gi|386001227|ref|YP_005919526.1| - 0.1 13.0 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal DNA_ligase_A_N PF04675.9 gi|386001228|ref|YP_005919527.1| - 1.4e-28 99.9 0.0 6.9e-27 94.3 0.0 2.1 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_M PF01068.16 gi|386001228|ref|YP_005919527.1| - 1.4e-18 67.0 0.0 2.1e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain Fasciclin PF02469.17 gi|386001229|ref|YP_005919528.1| - 1.6e-31 108.9 0.0 2.9e-31 108.1 0.0 1.4 1 0 0 1 1 1 1 Fasciclin domain Plasmid_stabil PF05016.9 gi|386001230|ref|YP_005919529.1| - 5.6e-07 29.8 0.1 7.2e-07 29.5 0.1 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein DUF217 PF02697.9 gi|386001231|ref|YP_005919530.1| - 0.00036 20.7 0.0 0.00039 20.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 UPF0175 PF03683.8 gi|386001232|ref|YP_005919531.1| - 1.6e-17 62.7 0.3 1.8e-17 62.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) PhosphMutase PF10143.4 gi|386001234|ref|YP_005919533.1| - 1.7e-53 180.7 0.0 2.5e-53 180.2 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|386001234|ref|YP_005919533.1| - 2.2e-44 151.7 0.0 2.5e-44 151.5 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily RibD_C PF01872.12 gi|386001235|ref|YP_005919534.1| - 5.4e-24 84.9 0.0 7.3e-24 84.4 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain MCR_C PF04609.7 gi|386001236|ref|YP_005919535.1| - 5.8e-41 140.0 1.7 1.1e-37 129.3 0.2 3.2 1 1 1 2 2 2 2 Methyl-coenzyme M reductase operon protein C RNase_H2-Ydr279 PF09468.5 gi|386001236|ref|YP_005919535.1| - 0.14 11.2 0.1 0.14 11.3 0.1 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) TP_methylase PF00590.15 gi|386001237|ref|YP_005919536.1| - 1.4e-15 57.5 0.1 1.8e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF2767 PF10965.3 gi|386001238|ref|YP_005919537.1| - 0.12 12.2 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2767) PTPS PF01242.14 gi|386001239|ref|YP_005919538.1| - 1.1e-35 122.0 0.0 1.2e-35 121.8 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase QueC PF06508.8 gi|386001240|ref|YP_005919539.1| - 1.9e-52 177.6 0.0 2.1e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|386001240|ref|YP_005919539.1| - 1.4e-07 31.1 0.0 1.3e-06 28.0 0.0 2.1 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|386001240|ref|YP_005919539.1| - 0.0031 17.0 0.0 0.0058 16.1 0.0 1.4 2 0 0 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|386001240|ref|YP_005919539.1| - 0.061 11.8 0.0 0.1 11.1 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase Radical_SAM PF04055.16 gi|386001241|ref|YP_005919540.1| - 4.3e-18 66.0 0.0 8.3e-18 65.1 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|386001241|ref|YP_005919540.1| - 8.1e-15 54.8 0.0 1.2e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|386001241|ref|YP_005919540.1| - 2.6e-10 40.5 0.0 3.8e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_31 PF13560.1 gi|386001241|ref|YP_005919540.1| - 0.11 12.6 0.6 0.62 10.3 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2124 PF09897.4 gi|386001243|ref|YP_005919542.1| - 6.6e-44 149.1 0.0 7.5e-44 148.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Methyltransf_11 PF08241.7 gi|386001244|ref|YP_005919543.1| - 5.9e-08 33.1 0.0 1e-07 32.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001244|ref|YP_005919543.1| - 0.00084 19.0 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386001244|ref|YP_005919543.1| - 0.0036 17.6 0.0 0.005 17.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|386001244|ref|YP_005919543.1| - 0.012 14.9 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.1 gi|386001244|ref|YP_005919543.1| - 0.018 14.6 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain STT3 PF02516.9 gi|386001245|ref|YP_005919544.1| - 1e-25 90.6 32.5 1.2e-25 90.4 21.0 2.0 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|386001245|ref|YP_005919544.1| - 8.7e-06 25.7 11.9 8.7e-06 25.7 8.3 3.5 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF788 PF05620.6 gi|386001245|ref|YP_005919544.1| - 1.2 8.9 0.0 1.2 8.9 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF788) Creatininase PF02633.9 gi|386001246|ref|YP_005919545.1| - 3.1e-64 216.3 0.1 3.5e-64 216.1 0.1 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase tRNA-synt_2d PF01409.15 gi|386001247|ref|YP_005919546.1| - 2.3e-94 315.2 0.0 3.1e-94 314.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HTH_27 PF13463.1 gi|386001247|ref|YP_005919546.1| - 5.3e-06 26.6 0.3 0.021 15.1 0.0 2.6 2 0 0 2 2 2 2 Winged helix DNA-binding domain GerE PF00196.14 gi|386001247|ref|YP_005919546.1| - 0.00026 20.2 0.0 0.00053 19.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family tRNA-synt_2 PF00152.15 gi|386001247|ref|YP_005919546.1| - 0.011 14.5 1.0 0.11 11.2 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|386001247|ref|YP_005919546.1| - 0.011 15.3 0.0 0.025 14.1 0.0 1.6 1 1 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) HTH_45 PF14947.1 gi|386001247|ref|YP_005919546.1| - 0.021 14.6 0.0 1 9.1 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix Sigma70_r4_2 PF08281.7 gi|386001247|ref|YP_005919546.1| - 0.055 12.9 0.2 0.34 10.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|386001247|ref|YP_005919546.1| - 0.67 9.9 0.0 0.67 9.9 0.0 2.1 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain B5 PF03484.10 gi|386001248|ref|YP_005919547.1| - 9.9e-15 54.1 0.0 6.6e-14 51.4 0.0 2.4 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|386001248|ref|YP_005919547.1| - 8e-14 51.4 0.0 1.3e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|386001248|ref|YP_005919547.1| - 0.00024 20.3 0.0 0.018 14.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) CBS PF00571.23 gi|386001249|ref|YP_005919548.1| - 1.6e-27 95.0 1.4 1.7e-16 59.7 0.1 2.1 2 0 0 2 2 2 2 CBS domain DUF11 PF01345.13 gi|386001250|ref|YP_005919549.1| - 0.0015 18.5 0.3 0.0047 16.9 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|386001250|ref|YP_005919549.1| - 0.02 14.9 0.6 0.056 13.4 0.4 1.7 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF2807 PF10988.3 gi|386001250|ref|YP_005919549.1| - 0.037 13.5 0.0 0.062 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2807) He_PIG PF05345.7 gi|386001250|ref|YP_005919549.1| - 0.076 13.0 0.8 0.33 10.9 0.1 2.5 2 0 0 2 2 2 0 Putative Ig domain RNase_Zc3h12a_2 PF14626.1 gi|386001253|ref|YP_005919552.1| - 0.027 14.3 0.0 0.051 13.4 0.0 1.4 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain DUF128 PF01995.11 gi|386001254|ref|YP_005919553.1| - 2.3e-72 242.7 0.0 2.9e-72 242.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|386001254|ref|YP_005919553.1| - 1.4e-23 82.4 0.4 2.9e-23 81.3 0.3 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.14 gi|386001254|ref|YP_005919553.1| - 0.017 14.5 0.0 0.029 13.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e PEGA PF08308.6 gi|386001255|ref|YP_005919554.1| - 1.4e-11 43.9 0.3 4.3e-11 42.4 0.1 1.8 2 0 0 2 2 2 1 PEGA domain Ribosomal_S6e PF01092.14 gi|386001256|ref|YP_005919555.1| - 6.1e-36 122.8 0.9 6.9e-36 122.6 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e MgtE PF01769.11 gi|386001257|ref|YP_005919556.1| - 1.5e-34 119.1 18.2 6.8e-21 74.9 2.4 3.6 4 0 0 4 4 4 2 Divalent cation transporter FAD_binding_3 PF01494.14 gi|386001258|ref|YP_005919557.1| - 1.4e-10 40.7 12.1 1.9e-05 23.8 0.5 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|386001258|ref|YP_005919557.1| - 5.5e-08 32.3 0.8 5.5e-08 32.3 0.6 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|386001258|ref|YP_005919557.1| - 6.2e-07 28.2 0.9 9.9e-07 27.5 0.6 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|386001258|ref|YP_005919557.1| - 9.1e-07 28.9 0.1 9.1e-07 28.9 0.1 1.9 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|386001258|ref|YP_005919557.1| - 2.3e-06 27.5 4.3 1.1e-05 25.4 0.3 3.2 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|386001258|ref|YP_005919557.1| - 3.1e-06 26.2 0.2 6e-06 25.3 0.0 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|386001258|ref|YP_005919557.1| - 1.5e-05 24.1 2.0 0.0041 16.1 0.2 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|386001258|ref|YP_005919557.1| - 3.7e-05 22.5 0.3 0.023 13.3 0.1 2.5 2 1 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|386001258|ref|YP_005919557.1| - 5.1e-05 22.4 0.3 5.1e-05 22.4 0.2 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|386001258|ref|YP_005919557.1| - 5.9e-05 23.3 0.7 0.00017 21.9 0.5 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|386001258|ref|YP_005919557.1| - 9.1e-05 22.0 1.3 9.1e-05 22.0 0.9 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.19 gi|386001258|ref|YP_005919557.1| - 0.00022 20.2 13.9 0.00098 18.1 1.0 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|386001258|ref|YP_005919557.1| - 0.00081 18.3 3.1 0.00081 18.3 2.1 2.0 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.13 gi|386001258|ref|YP_005919557.1| - 0.0031 17.1 0.2 0.0061 16.2 0.2 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|386001258|ref|YP_005919557.1| - 0.012 15.6 0.5 0.034 14.1 0.3 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|386001258|ref|YP_005919557.1| - 0.028 14.2 0.3 4.1 7.1 0.1 3.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|386001258|ref|YP_005919557.1| - 0.03 13.4 0.0 0.049 12.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|386001258|ref|YP_005919557.1| - 0.096 12.5 0.1 0.24 11.2 0.1 1.7 1 0 0 1 1 1 0 ThiF family SSF PF00474.12 gi|386001259|ref|YP_005919558.1| - 1.1e-29 103.3 34.5 1.6e-29 102.8 23.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Nramp PF01566.13 gi|386001259|ref|YP_005919558.1| - 0.00013 20.8 29.9 0.00028 19.8 20.7 1.5 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein ILVD_EDD PF00920.16 gi|386001260|ref|YP_005919559.1| - 9.3e-211 700.7 1.5 1.1e-210 700.5 1.0 1.0 1 0 0 1 1 1 1 Dehydratase family LigT_PEase PF02834.11 gi|386001261|ref|YP_005919560.1| - 1.2e-26 92.4 0.1 1.3e-14 53.8 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|386001261|ref|YP_005919560.1| - 1.3e-09 37.9 0.0 1.7e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily tRNA_NucTransf2 PF09249.6 gi|386001262|ref|YP_005919561.1| - 4.1e-43 145.8 0.0 6.6e-43 145.2 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|386001262|ref|YP_005919561.1| - 4.4e-13 49.3 0.0 9.5e-13 48.3 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.14 gi|386001263|ref|YP_005919562.1| - 1.1e-91 307.4 0.0 1.2e-91 307.2 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain S-layer PF07752.6 gi|386001264|ref|YP_005919563.1| - 9e-114 379.0 35.8 8.4e-58 195.5 9.9 2.0 2 0 0 2 2 2 2 S-layer protein DAGAT PF03982.8 gi|386001264|ref|YP_005919563.1| - 0.0045 15.7 0.0 0.57 8.8 0.0 2.1 2 0 0 2 2 2 2 Diacylglycerol acyltransferase DHOase PF12890.2 gi|386001264|ref|YP_005919563.1| - 0.018 14.7 3.4 0.51 10.0 0.2 3.0 2 0 0 2 2 2 0 Dihydro-orotase-like Cuticle_3 PF11018.3 gi|386001264|ref|YP_005919563.1| - 0.089 12.9 6.9 0.15 12.1 4.8 1.3 1 0 0 1 1 1 0 Pupal cuticle protein C1 PrcB_C PF14343.1 gi|386001264|ref|YP_005919563.1| - 0.14 11.8 3.5 13 5.5 0.1 3.9 3 2 0 3 3 3 0 PrcB C-terminal MCPVI PF02993.9 gi|386001264|ref|YP_005919563.1| - 0.3 11.1 3.0 0.52 10.4 2.1 1.3 1 0 0 1 1 1 0 Minor capsid protein VI DUF3992 PF13157.1 gi|386001264|ref|YP_005919563.1| - 0.34 11.1 7.2 8.2 6.7 0.0 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF3992) DAP_B PF07930.7 gi|386001264|ref|YP_005919563.1| - 0.56 9.9 4.1 4.8 6.9 0.2 2.5 2 0 0 2 2 2 0 D-aminopeptidase, domain B DUF3203 PF11462.3 gi|386001264|ref|YP_005919563.1| - 1.2 9.1 6.2 16 5.5 0.0 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF3203) Radical_SAM PF04055.16 gi|386001265|ref|YP_005919564.1| - 2.3e-19 70.2 0.0 3.3e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|386001265|ref|YP_005919564.1| - 1.2e-05 25.4 0.0 2.5e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.14 gi|386001265|ref|YP_005919564.1| - 0.003 17.0 1.6 0.23 10.9 0.0 2.8 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_4 PF13717.1 gi|386001265|ref|YP_005919564.1| - 0.0065 16.1 8.7 1.7 8.4 0.0 4.8 4 1 1 5 5 5 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|386001265|ref|YP_005919564.1| - 0.0096 15.4 9.2 2.1 7.9 0.0 4.8 4 1 1 5 5 5 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|386001265|ref|YP_005919564.1| - 0.044 13.4 5.0 0.39 10.4 0.1 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|386001265|ref|YP_005919564.1| - 0.082 12.8 5.2 0.72 9.8 0.1 3.5 3 0 0 3 3 3 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|386001265|ref|YP_005919564.1| - 0.098 11.8 2.7 0.085 12.0 0.4 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|386001265|ref|YP_005919564.1| - 0.27 10.5 11.1 0.29 10.4 4.0 3.4 3 1 0 3 3 3 0 zinc-ribbon domain ThiC PF01964.13 gi|386001266|ref|YP_005919565.1| - 5.4e-142 473.2 0.0 6.1e-142 473.0 0.0 1.0 1 0 0 1 1 1 1 ThiC family NIR_SIR PF01077.17 gi|386001267|ref|YP_005919566.1| - 3e-37 127.3 0.0 4.5e-37 126.8 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|386001267|ref|YP_005919566.1| - 2.4e-13 49.4 0.0 4.2e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain dTMP_synthase PF02593.9 gi|386001268|ref|YP_005919567.1| - 7.1e-67 224.9 0.0 8.2e-67 224.7 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase HxlR PF01638.12 gi|386001269|ref|YP_005919568.1| - 1.7e-23 82.0 0.4 2e-23 81.8 0.3 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.2 gi|386001269|ref|YP_005919568.1| - 0.00019 21.1 0.1 0.00029 20.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|386001269|ref|YP_005919568.1| - 0.00036 20.1 0.2 0.00079 19.0 0.1 1.6 1 1 0 1 1 1 1 MarR family DUF4423 PF14394.1 gi|386001269|ref|YP_005919568.1| - 0.0018 17.8 0.0 0.0021 17.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) PadR PF03551.9 gi|386001269|ref|YP_005919568.1| - 0.0037 16.9 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|386001269|ref|YP_005919568.1| - 0.0047 16.9 0.0 0.0061 16.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|386001269|ref|YP_005919568.1| - 0.0068 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|386001269|ref|YP_005919568.1| - 0.0079 15.5 0.1 0.015 14.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2513 PF10711.4 gi|386001269|ref|YP_005919568.1| - 0.03 14.3 0.0 0.036 14.1 0.0 1.1 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF4393 PF14337.1 gi|386001269|ref|YP_005919568.1| - 0.041 13.3 0.0 0.045 13.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) MarR PF01047.17 gi|386001269|ref|YP_005919568.1| - 0.047 13.4 0.0 0.091 12.4 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.5 gi|386001269|ref|YP_005919568.1| - 0.068 12.9 1.1 0.23 11.2 0.1 2.3 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|386001269|ref|YP_005919568.1| - 0.13 12.5 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF11 PF01345.13 gi|386001271|ref|YP_005919570.1| - 1.8e-29 101.6 46.1 2.4e-10 40.2 0.9 8.9 9 1 1 10 10 10 6 Domain of unknown function DUF11 CARDB PF07705.6 gi|386001271|ref|YP_005919570.1| - 1.4e-06 28.3 5.0 1.2 9.2 0.0 7.1 7 0 0 7 7 7 2 CARDB NPCBM_assoc PF10633.4 gi|386001271|ref|YP_005919570.1| - 0.00014 21.8 8.6 2.3 8.3 0.0 6.8 7 0 0 7 7 7 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Fn3-like PF14310.1 gi|386001271|ref|YP_005919570.1| - 0.003 17.4 0.3 3.4 7.6 0.0 4.1 3 0 0 3 3 3 1 Fibronectin type III-like domain DUF4399 PF14347.1 gi|386001271|ref|YP_005919570.1| - 0.062 13.3 0.0 6.9 6.7 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4399) PKD PF00801.15 gi|386001272|ref|YP_005919571.1| - 5.7e-21 74.0 14.5 6.3e-09 35.4 0.1 4.7 4 0 0 4 4 4 4 PKD domain Big_3_4 PF13754.1 gi|386001272|ref|YP_005919571.1| - 9.7e-05 22.6 13.2 0.047 14.0 0.6 4.0 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 3) He_PIG PF05345.7 gi|386001272|ref|YP_005919571.1| - 0.00086 19.2 5.1 0.91 9.5 0.0 3.9 4 0 0 4 4 4 2 Putative Ig domain DUF4625 PF15418.1 gi|386001272|ref|YP_005919571.1| - 0.00088 19.3 0.0 1.6 8.8 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4625) Y_Y_Y PF07495.8 gi|386001272|ref|YP_005919571.1| - 0.0072 16.0 0.6 2.6 7.8 0.0 3.5 4 0 0 4 4 4 1 Y_Y_Y domain Ig_2 PF13895.1 gi|386001272|ref|YP_005919571.1| - 0.11 12.6 0.1 0.11 12.6 0.1 2.5 2 1 0 2 2 2 0 Immunoglobulin domain Beta_helix PF13229.1 gi|386001275|ref|YP_005919574.1| - 8.1e-53 178.4 76.0 1.6e-20 73.4 21.1 3.9 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.8 gi|386001275|ref|YP_005919574.1| - 1.5e-50 171.5 64.9 5.5e-19 68.2 9.4 3.4 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.6 gi|386001275|ref|YP_005919574.1| - 1.4e-14 53.8 41.1 2e-08 33.7 3.9 5.8 1 1 1 3 3 3 3 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.2 gi|386001275|ref|YP_005919574.1| - 3.9e-10 40.2 46.9 0.00014 22.0 14.0 5.9 1 1 3 4 4 4 3 Pectate lyase superfamily protein DUF1412 PF07203.6 gi|386001275|ref|YP_005919574.1| - 0.07 13.0 0.6 2.4 8.1 0.4 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1412) Beta_helix PF13229.1 gi|386001276|ref|YP_005919575.1| - 1.2e-54 184.3 117.5 4.3e-18 65.5 23.9 3.6 1 1 3 4 4 4 4 Right handed beta helix region NosD PF05048.8 gi|386001276|ref|YP_005919575.1| - 5.4e-52 176.2 66.6 3.1e-21 75.6 12.6 3.5 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.6 gi|386001276|ref|YP_005919575.1| - 4.2e-09 35.8 34.2 0.00011 21.4 3.6 4.8 1 1 1 3 3 3 3 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.2 gi|386001276|ref|YP_005919575.1| - 6.5e-08 32.9 47.0 0.00071 19.7 13.8 5.5 1 1 3 4 4 4 4 Pectate lyase superfamily protein Pentapeptide PF00805.17 gi|386001277|ref|YP_005919576.1| - 5.6e-85 277.6 69.1 1.1e-12 46.8 0.7 10.6 2 1 10 12 12 12 12 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|386001277|ref|YP_005919576.1| - 3.2e-42 142.2 0.0 5.2e-09 35.7 0.0 5.4 1 1 4 5 5 5 5 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|386001277|ref|YP_005919576.1| - 6.5e-37 125.1 0.0 1.5e-05 24.7 0.1 9.0 1 1 8 9 9 9 9 Pentapeptide repeats (9 copies) CfAFP PF05264.6 gi|386001277|ref|YP_005919576.1| - 0.16 11.7 0.0 22 4.7 0.0 3.2 2 2 2 4 4 4 0 Choristoneura fumiferana antifreeze protein (CfAFP) Big_5 PF13205.1 gi|386001279|ref|YP_005919578.1| - 0.023 15.2 0.0 0.05 14.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial Ig-like domain HYLS1_C PF15311.1 gi|386001279|ref|YP_005919578.1| - 0.11 12.6 0.2 0.27 11.4 0.1 1.5 1 0 0 1 1 1 0 Hydrolethalus syndrome protein 1 C-terminus Metallophos_2 PF12850.2 gi|386001280|ref|YP_005919579.1| - 1.3e-23 83.5 0.0 1.5e-23 83.3 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|386001280|ref|YP_005919579.1| - 1.6e-07 30.8 0.1 0.00028 20.3 0.1 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase SIS PF01380.17 gi|386001281|ref|YP_005919580.1| - 1.7e-08 34.1 0.0 0.00097 18.7 0.0 3.1 2 1 0 2 2 2 2 SIS domain DUF1297 PF06973.7 gi|386001282|ref|YP_005919581.1| - 2.9e-65 219.1 0.0 4e-65 218.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|386001282|ref|YP_005919581.1| - 2.4e-40 137.1 0.0 3.9e-40 136.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|386001282|ref|YP_005919581.1| - 0.0012 18.6 0.0 0.56 9.9 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|386001282|ref|YP_005919581.1| - 0.0048 16.7 0.0 0.0094 15.8 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|386001282|ref|YP_005919581.1| - 0.14 11.4 0.0 0.26 10.5 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain IGPD PF00475.13 gi|386001283|ref|YP_005919582.1| - 2.8e-30 105.0 0.0 5.6e-30 104.1 0.0 1.4 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase POR PF01558.13 gi|386001285|ref|YP_005919584.1| - 1.4e-38 132.4 0.0 2.1e-38 131.9 0.0 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|386001285|ref|YP_005919584.1| - 6.6e-22 77.7 0.0 1.1e-21 77.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|386001286|ref|YP_005919585.1| - 2.2e-60 204.0 0.0 2.8e-60 203.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|386001286|ref|YP_005919585.1| - 0.00025 20.5 0.2 0.00039 19.9 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|386001286|ref|YP_005919585.1| - 0.00046 20.1 0.0 0.00089 19.1 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain BicD PF09730.4 gi|386001286|ref|YP_005919585.1| - 0.11 10.7 0.3 0.18 10.1 0.2 1.2 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D AMP-binding PF00501.23 gi|386001287|ref|YP_005919586.1| - 8.9e-82 274.6 0.0 1.2e-81 274.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|386001287|ref|YP_005919586.1| - 2.1e-18 67.0 0.8 8e-18 65.1 0.3 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.2 gi|386001287|ref|YP_005919586.1| - 6.6e-10 39.2 8.6 1.3e-09 38.2 6.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386001287|ref|YP_005919586.1| - 4.4e-07 29.6 4.7 9.4e-07 28.5 3.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386001287|ref|YP_005919586.1| - 6.1e-07 29.5 6.4 0.01 16.0 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386001287|ref|YP_005919586.1| - 2.3e-06 26.9 16.8 0.00087 18.7 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386001287|ref|YP_005919586.1| - 3.9e-06 26.5 9.2 1.4e-05 24.7 6.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386001287|ref|YP_005919586.1| - 1.9e-05 24.2 13.6 0.0045 16.8 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|386001287|ref|YP_005919586.1| - 2.8e-05 24.4 2.6 0.15 12.5 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386001287|ref|YP_005919586.1| - 0.00032 20.4 15.8 0.037 13.9 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|386001287|ref|YP_005919586.1| - 0.00037 20.4 7.9 0.001 19.0 5.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386001287|ref|YP_005919586.1| - 0.0011 19.0 11.8 0.059 13.7 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|386001287|ref|YP_005919586.1| - 0.0023 18.2 8.7 0.0062 16.8 0.7 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|386001287|ref|YP_005919586.1| - 0.0024 18.1 10.2 0.46 10.8 0.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|386001287|ref|YP_005919586.1| - 0.0027 18.2 5.9 0.024 15.2 0.4 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|386001287|ref|YP_005919586.1| - 0.0037 17.9 10.6 0.11 13.2 7.6 2.4 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|386001287|ref|YP_005919586.1| - 1.5 9.6 17.1 3.6 8.3 3.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Cupin_2 PF07883.6 gi|386001288|ref|YP_005919587.1| - 2.4e-15 55.7 0.0 7.2e-15 54.2 0.0 1.7 2 0 0 2 2 2 1 Cupin domain HTH_19 PF12844.2 gi|386001288|ref|YP_005919587.1| - 8.2e-09 35.3 0.1 1.2e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|386001288|ref|YP_005919587.1| - 4.5e-05 23.1 0.1 6.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|386001288|ref|YP_005919587.1| - 0.0001 22.3 0.0 0.00018 21.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.14 gi|386001288|ref|YP_005919587.1| - 0.0027 17.3 0.0 0.0043 16.7 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain YycC PF14174.1 gi|386001288|ref|YP_005919587.1| - 0.025 14.2 0.1 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 YycC-like protein Cupin_1 PF00190.17 gi|386001288|ref|YP_005919587.1| - 0.055 12.9 0.0 0.084 12.3 0.0 1.4 1 0 0 1 1 1 0 Cupin CENP-C_C PF11699.3 gi|386001288|ref|YP_005919587.1| - 0.07 13.1 0.0 0.14 12.1 0.0 1.6 1 1 0 1 1 1 0 Mif2/CENP-C like EutQ PF06249.7 gi|386001288|ref|YP_005919587.1| - 0.14 11.7 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Archease PF01951.11 gi|386001289|ref|YP_005919588.1| - 4.5e-39 133.5 0.0 5e-39 133.3 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.12 gi|386001290|ref|YP_005919589.1| - 1.3e-149 498.8 0.0 1.4e-149 498.6 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB SpoU_methylase PF00588.14 gi|386001291|ref|YP_005919590.1| - 1.3e-30 106.0 0.0 2e-30 105.5 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family Sigma70_ner PF04546.8 gi|386001291|ref|YP_005919590.1| - 0.13 11.8 0.1 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region RDD PF06271.7 gi|386001292|ref|YP_005919591.1| - 2.9e-24 85.5 3.3 3.4e-24 85.3 2.3 1.0 1 0 0 1 1 1 1 RDD family DUF1634 PF07843.6 gi|386001292|ref|YP_005919591.1| - 0.096 12.3 1.7 0.21 11.2 0.1 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1634) RDD PF06271.7 gi|386001293|ref|YP_005919592.1| - 7.2e-25 87.4 2.8 8.3e-25 87.2 1.9 1.0 1 0 0 1 1 1 1 RDD family dTMP_synthase PF02593.9 gi|386001295|ref|YP_005919594.1| - 2.5e-67 226.4 0.0 2.8e-67 226.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Peptidase_M20 PF01546.23 gi|386001296|ref|YP_005919595.1| - 5.3e-22 78.2 1.0 5.5e-21 74.9 0.7 2.0 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|386001296|ref|YP_005919595.1| - 0.0028 16.4 0.1 0.067 11.9 0.1 2.5 3 0 0 3 3 3 1 M42 glutamyl aminopeptidase M20_dimer PF07687.9 gi|386001296|ref|YP_005919595.1| - 0.016 14.9 0.2 0.044 13.5 0.2 1.8 1 1 0 1 1 1 0 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|386001296|ref|YP_005919595.1| - 0.021 14.5 2.2 0.03 14.0 0.6 1.8 2 1 0 2 2 2 0 Peptidase family M28 NHL PF01436.16 gi|386001297|ref|YP_005919596.1| - 7.8e-11 41.3 3.0 0.00039 20.2 0.1 3.6 3 1 0 3 3 3 3 NHL repeat SGL PF08450.7 gi|386001297|ref|YP_005919596.1| - 2.9e-09 36.6 0.4 0.00072 19.0 0.0 2.1 1 1 1 2 2 2 2 SMP-30/Gluconolaconase/LRE-like region SdiA-regulated PF06977.6 gi|386001297|ref|YP_005919596.1| - 0.016 14.1 0.0 0.054 12.4 0.0 1.6 1 1 1 2 2 2 0 SdiA-regulated DUF2874 PF11396.3 gi|386001297|ref|YP_005919596.1| - 0.017 15.0 0.4 3.5 7.6 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2874) PapD_C PF02753.12 gi|386001297|ref|YP_005919596.1| - 0.063 13.1 0.0 6.9 6.5 0.0 2.2 2 0 0 2 2 2 0 Pili assembly chaperone PapD, C-terminal domain Pentapeptide_3 PF13576.1 gi|386001299|ref|YP_005919598.1| - 1.9e-24 85.2 38.8 2.2e-09 37.0 3.4 5.1 3 1 1 5 5 5 4 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|386001299|ref|YP_005919598.1| - 0.21 10.8 10.9 5.4 6.3 1.6 5.7 4 2 1 5 5 5 0 Pentapeptide repeats (8 copies) Methyltransf_12 PF08242.7 gi|386001300|ref|YP_005919599.1| - 0.0018 18.7 0.0 0.0042 17.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|386001300|ref|YP_005919599.1| - 0.0078 15.6 0.0 0.012 14.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|386001300|ref|YP_005919599.1| - 0.0079 16.7 0.4 0.013 16.0 0.3 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386001300|ref|YP_005919599.1| - 0.014 15.4 1.2 0.022 14.7 0.8 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386001300|ref|YP_005919599.1| - 0.016 14.7 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|386001300|ref|YP_005919599.1| - 0.066 12.3 0.0 0.15 11.2 0.0 1.5 2 0 0 2 2 2 0 O-methyltransferase Fic PF02661.13 gi|386001301|ref|YP_005919600.1| - 5.5e-20 71.8 0.0 1.5e-19 70.4 0.0 1.8 1 0 0 1 1 1 1 Fic/DOC family HTH_23 PF13384.1 gi|386001301|ref|YP_005919600.1| - 0.0019 17.8 0.3 0.0081 15.7 0.2 2.1 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|386001301|ref|YP_005919600.1| - 0.014 15.0 1.7 0.062 12.9 0.6 2.4 2 0 0 2 2 2 0 MarR family Fic_N PF13784.1 gi|386001301|ref|YP_005919600.1| - 0.023 14.5 0.1 0.058 13.2 0.1 1.6 1 0 0 1 1 1 0 Fic/DOC family N-terminal HTH_29 PF13551.1 gi|386001301|ref|YP_005919600.1| - 0.044 13.9 0.2 0.044 13.9 0.2 2.3 2 1 1 3 3 3 0 Winged helix-turn helix HTH_28 PF13518.1 gi|386001301|ref|YP_005919600.1| - 0.061 13.3 0.2 0.21 11.6 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.7 gi|386001301|ref|YP_005919600.1| - 0.11 12.4 0.9 1.8 8.6 0.1 2.4 2 0 0 2 2 2 0 PaaX-like protein Nup54 PF13874.1 gi|386001302|ref|YP_005919601.1| - 0.00093 18.8 0.5 0.0028 17.3 0.0 1.8 2 0 0 2 2 2 1 Nucleoporin complex subunit 54 MerR_2 PF13591.1 gi|386001302|ref|YP_005919601.1| - 0.06 12.9 1.0 3.6 7.2 0.0 2.9 2 1 0 2 2 2 0 MerR HTH family regulatory protein AKNA PF12443.3 gi|386001302|ref|YP_005919601.1| - 0.15 12.0 0.3 3.2 7.8 0.0 2.3 2 0 0 2 2 2 0 AT-hook-containing transcription factor DivIC PF04977.10 gi|386001302|ref|YP_005919601.1| - 0.33 10.4 2.0 1.5 8.3 0.0 2.5 3 0 0 3 3 3 0 Septum formation initiator CCG PF02754.11 gi|386001303|ref|YP_005919602.1| - 0.001 19.0 0.4 0.0024 17.8 0.1 1.7 2 0 0 2 2 2 1 Cysteine-rich domain zf-CSL PF05207.8 gi|386001303|ref|YP_005919602.1| - 0.03 13.8 0.1 0.048 13.1 0.0 1.3 1 0 0 1 1 1 0 CSL zinc finger UPF0150 PF03681.10 gi|386001304|ref|YP_005919603.1| - 3.1e-18 65.1 0.3 4.3e-18 64.6 0.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) YcfA PF07927.7 gi|386001305|ref|YP_005919604.1| - 9.6e-06 25.4 0.2 1.3e-05 25.0 0.0 1.3 2 0 0 2 2 2 1 YcfA-like protein CCG PF02754.11 gi|386001306|ref|YP_005919605.1| - 9.7e-22 76.7 0.2 1.8e-09 37.4 0.0 2.7 2 0 0 2 2 2 2 Cysteine-rich domain B12-binding_2 PF02607.12 gi|386001306|ref|YP_005919605.1| - 0.034 14.1 2.0 1.1 9.3 0.8 3.4 3 1 0 3 3 3 0 B12 binding domain Fer4_8 PF13183.1 gi|386001307|ref|YP_005919606.1| - 5.7e-11 42.2 6.6 9.9e-11 41.5 4.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386001307|ref|YP_005919606.1| - 2.9e-09 37.1 5.2 5.8e-09 36.1 3.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386001307|ref|YP_005919606.1| - 1.5e-08 34.7 2.7 3.1e-08 33.7 1.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386001307|ref|YP_005919606.1| - 2.8e-07 30.2 6.4 5.7e-07 29.2 4.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386001307|ref|YP_005919606.1| - 2e-06 28.1 3.4 0.0061 16.9 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386001307|ref|YP_005919606.1| - 5e-05 23.0 8.7 0.00015 21.5 6.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386001307|ref|YP_005919606.1| - 5.4e-05 23.5 7.8 0.00017 21.8 5.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386001307|ref|YP_005919606.1| - 6.5e-05 22.3 10.5 0.003 17.0 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|386001307|ref|YP_005919606.1| - 0.00034 20.3 14.5 0.0054 16.5 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|386001307|ref|YP_005919606.1| - 0.00073 19.6 11.4 0.014 15.6 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|386001307|ref|YP_005919606.1| - 0.022 14.6 2.1 0.022 14.6 1.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386001307|ref|YP_005919606.1| - 0.049 14.3 12.2 3.1 8.6 8.4 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|386001307|ref|YP_005919606.1| - 0.14 12.7 6.4 1.5 9.4 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|386001307|ref|YP_005919606.1| - 0.58 10.8 14.8 0.63 10.7 3.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|386001307|ref|YP_005919606.1| - 0.67 9.6 7.1 6.7 6.3 4.7 2.2 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.1 gi|386001307|ref|YP_005919606.1| - 0.69 10.3 11.4 0.21 12.0 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|386001308|ref|YP_005919607.1| - 3.4e-43 143.5 79.6 1e-08 34.4 2.2 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386001308|ref|YP_005919607.1| - 1.1e-35 121.8 57.0 9e-12 45.1 2.5 4.8 3 1 0 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386001308|ref|YP_005919607.1| - 3e-32 110.1 55.8 8.1e-09 35.1 4.9 6.1 3 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386001308|ref|YP_005919607.1| - 6.3e-32 108.0 80.4 8.6e-08 31.7 1.5 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.1 gi|386001308|ref|YP_005919607.1| - 2.9e-29 100.7 52.8 1.6e-08 34.2 4.0 5.4 5 0 0 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386001308|ref|YP_005919607.1| - 1.6e-26 92.3 61.7 4.9e-07 29.9 5.6 6.1 3 1 4 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386001308|ref|YP_005919607.1| - 6.8e-26 88.6 75.3 1.3e-06 28.0 1.4 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386001308|ref|YP_005919607.1| - 8e-20 71.3 56.8 1.2e-05 25.9 4.9 7.3 3 2 5 8 8 8 7 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|386001308|ref|YP_005919607.1| - 8.5e-20 70.5 56.7 3.9e-06 26.7 5.7 5.8 4 1 2 6 6 6 5 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386001308|ref|YP_005919607.1| - 8.1e-15 53.8 78.3 0.00088 19.4 1.6 8.2 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386001308|ref|YP_005919607.1| - 1.1e-13 51.5 62.3 0.0018 18.7 0.8 8.2 7 1 0 7 7 7 5 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|386001308|ref|YP_005919607.1| - 1.6e-12 47.5 55.6 0.00026 21.2 3.5 6.8 4 3 3 7 7 7 4 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386001308|ref|YP_005919607.1| - 5.1e-09 36.4 63.2 0.015 15.7 0.5 8.3 7 1 1 8 8 8 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|386001308|ref|YP_005919607.1| - 9e-07 29.1 67.7 0.057 13.8 1.2 8.4 7 1 0 7 7 7 5 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|386001308|ref|YP_005919607.1| - 2.2e-06 27.8 106.2 0.0013 19.1 2.9 8.3 8 0 0 8 8 8 4 4Fe-4S binding domain Fer4_11 PF13247.1 gi|386001308|ref|YP_005919607.1| - 8.8e-06 25.5 39.3 1.7e-05 24.6 4.9 4.7 2 2 3 5 5 5 2 4Fe-4S dicluster domain FlpD PF02662.11 gi|386001309|ref|YP_005919608.1| - 3.9e-49 165.4 2.2 7.9e-48 161.2 0.1 3.2 3 0 0 3 3 3 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|386001309|ref|YP_005919608.1| - 3.7e-20 70.6 55.2 1.2e-07 31.0 2.7 5.4 5 1 0 5 5 4 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386001309|ref|YP_005919608.1| - 5.9e-17 61.7 33.6 5.6e-08 33.0 9.7 5.0 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386001309|ref|YP_005919608.1| - 4.3e-15 55.2 28.1 1.7e-09 37.2 5.6 4.2 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386001309|ref|YP_005919608.1| - 8.5e-15 53.6 47.0 2.3e-05 24.0 2.7 5.4 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|386001309|ref|YP_005919608.1| - 2e-14 52.6 56.3 2.6e-05 23.8 2.6 5.9 6 0 0 6 6 6 4 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|386001309|ref|YP_005919608.1| - 1.3e-13 51.3 0.6 6.3e-13 49.0 0.3 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_21 PF14697.1 gi|386001309|ref|YP_005919608.1| - 9.4e-13 47.8 41.8 1.2e-08 34.6 9.0 5.5 5 1 0 5 5 5 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|386001309|ref|YP_005919608.1| - 1.8e-12 47.6 24.9 0.0016 18.9 0.9 4.8 4 0 0 4 4 4 4 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|386001309|ref|YP_005919608.1| - 5.4e-12 46.2 27.1 0.00065 20.3 0.1 5.1 5 0 0 5 5 4 3 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|386001309|ref|YP_005919608.1| - 1.3e-11 44.5 37.5 3.4e-07 30.4 8.8 4.3 3 2 1 4 4 4 3 4Fe-4S dicluster domain DAO PF01266.19 gi|386001309|ref|YP_005919608.1| - 1.1e-08 34.3 0.6 0.00059 18.8 0.7 2.9 3 1 0 3 3 3 2 FAD dependent oxidoreductase Fer4_8 PF13183.1 gi|386001309|ref|YP_005919608.1| - 8.4e-07 28.9 33.2 0.0086 16.0 2.7 4.9 2 2 5 7 7 7 5 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|386001309|ref|YP_005919608.1| - 1.2e-06 27.9 0.2 2.1e-06 27.0 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|386001309|ref|YP_005919608.1| - 8.6e-06 24.8 0.5 1.7e-05 23.8 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|386001309|ref|YP_005919608.1| - 1.1e-05 25.6 28.1 0.057 13.7 1.2 5.2 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386001309|ref|YP_005919608.1| - 2e-05 24.5 47.2 0.00031 20.8 1.6 5.7 6 0 0 6 6 4 3 4Fe-4S binding domain NAD_binding_8 PF13450.1 gi|386001309|ref|YP_005919608.1| - 5.4e-05 23.1 0.0 0.00038 20.4 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|386001309|ref|YP_005919608.1| - 8.1e-05 22.9 0.3 0.00026 21.3 0.2 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|386001309|ref|YP_005919608.1| - 0.00055 18.9 0.1 0.00055 18.9 0.1 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Fer4_13 PF13370.1 gi|386001309|ref|YP_005919608.1| - 0.0013 19.0 34.2 0.017 15.4 0.9 4.3 4 0 0 4 4 3 2 4Fe-4S single cluster domain Pyr_redox_3 PF13738.1 gi|386001309|ref|YP_005919608.1| - 0.0015 18.6 0.0 0.01 15.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|386001309|ref|YP_005919608.1| - 0.002 17.2 0.5 0.0033 16.5 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|386001309|ref|YP_005919608.1| - 0.0052 15.3 0.2 0.0083 14.6 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Fer4_3 PF12798.2 gi|386001309|ref|YP_005919608.1| - 0.013 16.0 7.1 0.013 16.0 4.9 6.4 7 0 0 7 7 5 0 4Fe-4S binding domain Thi4 PF01946.12 gi|386001309|ref|YP_005919608.1| - 0.015 14.3 0.1 0.03 13.4 0.0 1.4 1 0 0 1 1 1 0 Thi4 family Fer4_18 PF13746.1 gi|386001309|ref|YP_005919608.1| - 0.053 13.9 45.7 0.046 14.1 2.0 5.3 5 1 1 6 6 4 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|386001309|ref|YP_005919608.1| - 0.16 11.8 23.3 0.08 12.8 3.9 3.6 3 2 0 3 3 2 0 4Fe-4S dicluster domain Lycopene_cycl PF05834.7 gi|386001309|ref|YP_005919608.1| - 0.24 10.2 0.4 0.42 9.4 0.3 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein DFP PF04127.10 gi|386001310|ref|YP_005919609.1| - 4.1e-50 169.9 0.1 8.6e-49 165.6 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|386001310|ref|YP_005919609.1| - 4.6e-28 97.4 0.2 8.5e-28 96.6 0.1 1.5 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|386001310|ref|YP_005919609.1| - 0.00043 20.3 0.1 0.0016 18.4 0.1 2.0 1 0 0 1 1 1 1 NADH(P)-binding Glyco_transf_4 PF13439.1 gi|386001310|ref|YP_005919609.1| - 0.0024 17.6 0.4 3.5 7.2 0.0 3.0 3 0 0 3 3 3 2 Glycosyltransferase Family 4 Pyr_redox PF00070.22 gi|386001310|ref|YP_005919609.1| - 0.028 14.8 0.1 0.028 14.8 0.1 3.0 4 1 1 5 5 5 0 Pyridine nucleotide-disulphide oxidoreductase SBP_bac_3 PF00497.15 gi|386001310|ref|YP_005919609.1| - 0.06 12.5 0.0 0.15 11.3 0.0 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 KH_5 PF13184.1 gi|386001310|ref|YP_005919609.1| - 0.18 11.6 1.4 2.3 8.0 0.1 3.0 3 0 0 3 3 3 0 NusA-like KH domain GHMP_kinases_N PF00288.21 gi|386001311|ref|YP_005919610.1| - 3.5e-05 23.7 4.7 7.7e-05 22.6 3.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF137 PF02006.11 gi|386001312|ref|YP_005919611.1| - 2.3e-75 251.8 0.1 2.8e-75 251.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Amidohydro_2 PF04909.9 gi|386001312|ref|YP_005919611.1| - 0.0092 15.5 0.8 0.015 14.8 0.5 1.4 1 1 0 1 1 1 1 Amidohydrolase ABC_tran PF00005.22 gi|386001314|ref|YP_005919613.1| - 1.2e-20 74.1 0.3 2.6e-08 34.2 0.1 4.7 4 1 0 4 4 3 3 ABC transporter SMC_N PF02463.14 gi|386001314|ref|YP_005919613.1| - 3.6e-10 39.4 0.0 0.074 12.2 0.0 4.1 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|386001314|ref|YP_005919613.1| - 7.7e-09 34.9 0.1 0.0046 16.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|386001314|ref|YP_005919613.1| - 1e-08 35.4 6.5 0.057 13.3 0.2 4.5 5 0 0 5 5 4 2 AAA domain AAA_23 PF13476.1 gi|386001314|ref|YP_005919613.1| - 3.6e-07 30.7 0.3 0.005 17.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|386001314|ref|YP_005919613.1| - 1.5e-06 28.0 0.0 0.11 12.4 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|386001314|ref|YP_005919613.1| - 1.8e-06 27.5 0.7 0.088 12.1 0.0 3.5 4 1 0 4 4 3 2 AAA domain AAA_16 PF13191.1 gi|386001314|ref|YP_005919613.1| - 8.7e-06 25.8 1.4 0.22 11.5 0.0 3.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_19 PF13245.1 gi|386001314|ref|YP_005919613.1| - 1.1e-05 25.0 0.8 0.41 10.4 0.0 3.9 3 0 0 3 3 3 2 Part of AAA domain AAA_22 PF13401.1 gi|386001314|ref|YP_005919613.1| - 1.3e-05 25.3 0.8 0.35 11.0 0.0 4.0 4 0 0 4 4 4 2 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|386001314|ref|YP_005919613.1| - 1.4e-05 24.9 2.4 0.0074 16.3 0.1 3.4 3 0 0 3 3 3 1 DnaJ central domain DUF258 PF03193.11 gi|386001314|ref|YP_005919613.1| - 2.6e-05 23.4 0.0 0.15 11.2 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 BCA_ABC_TP_C PF12399.3 gi|386001314|ref|YP_005919613.1| - 3e-05 23.5 6.6 0.015 14.9 0.6 2.7 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter AAA_33 PF13671.1 gi|386001314|ref|YP_005919613.1| - 4e-05 23.5 0.0 0.49 10.2 0.0 3.2 3 0 0 3 3 2 2 AAA domain Viral_helicase1 PF01443.13 gi|386001314|ref|YP_005919613.1| - 5.6e-05 22.7 0.0 0.1 12.1 0.0 2.4 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.1 gi|386001314|ref|YP_005919613.1| - 0.00011 22.4 3.7 0.12 12.7 0.8 3.7 3 1 0 3 3 3 1 AAA domain KaiC PF06745.8 gi|386001314|ref|YP_005919613.1| - 0.00012 21.2 0.1 0.13 11.3 0.0 2.6 2 0 0 2 2 2 2 KaiC DUF2075 PF09848.4 gi|386001314|ref|YP_005919613.1| - 0.00038 19.5 0.0 0.33 9.8 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|386001314|ref|YP_005919613.1| - 0.00051 19.8 1.2 0.87 9.2 0.0 3.0 4 0 0 4 4 2 2 Archaeal ATPase APS_kinase PF01583.15 gi|386001314|ref|YP_005919613.1| - 0.00055 19.6 0.1 0.94 9.1 0.0 2.7 3 0 0 3 3 2 2 Adenylylsulphate kinase AAA_15 PF13175.1 gi|386001314|ref|YP_005919613.1| - 0.00057 19.0 0.0 1.1 8.1 0.0 3.7 4 0 0 4 4 4 1 AAA ATPase domain AAA_10 PF12846.2 gi|386001314|ref|YP_005919613.1| - 0.00064 19.2 0.0 1.1 8.6 0.0 2.7 2 0 0 2 2 2 2 AAA-like domain T2SE PF00437.15 gi|386001314|ref|YP_005919613.1| - 0.0011 17.8 0.1 0.68 8.7 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein cobW PF02492.14 gi|386001314|ref|YP_005919613.1| - 0.0021 17.5 0.3 0.67 9.3 0.1 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|386001314|ref|YP_005919613.1| - 0.0032 17.1 0.0 1 8.9 0.0 2.6 3 0 0 3 3 2 1 NACHT domain AAA_17 PF13207.1 gi|386001314|ref|YP_005919613.1| - 0.0052 17.5 14.6 0.076 13.8 0.8 4.2 4 0 0 4 4 3 1 AAA domain MobB PF03205.9 gi|386001314|ref|YP_005919613.1| - 0.006 16.2 0.5 2.4 7.8 0.1 2.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|386001314|ref|YP_005919613.1| - 0.0071 15.1 0.1 5 5.8 0.0 3.1 3 0 0 3 3 3 0 ArgK protein NTPase_1 PF03266.10 gi|386001314|ref|YP_005919613.1| - 0.0095 15.6 0.2 7.1 6.3 0.0 3.0 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.17 gi|386001314|ref|YP_005919613.1| - 0.013 15.6 0.0 2.8 8.1 0.0 2.5 2 0 0 2 2 2 0 RNA helicase Miro PF08477.8 gi|386001314|ref|YP_005919613.1| - 0.016 15.6 0.2 5 7.6 0.0 3.2 4 0 0 4 4 2 0 Miro-like protein DAP3 PF10236.4 gi|386001314|ref|YP_005919613.1| - 0.019 13.8 0.0 2.6 6.9 0.0 2.6 3 0 0 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 MMR_HSR1 PF01926.18 gi|386001314|ref|YP_005919613.1| - 0.022 14.6 0.1 5.2 7.0 0.0 3.3 3 0 0 3 3 3 0 50S ribosome-binding GTPase HrpB4 PF09502.5 gi|386001314|ref|YP_005919613.1| - 0.028 13.5 0.0 0.056 12.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB4) Lar_restr_allev PF14354.1 gi|386001314|ref|YP_005919613.1| - 0.032 14.5 4.1 5.1 7.4 0.1 3.4 3 0 0 3 3 3 0 Restriction alleviation protein Lar AAA_28 PF13521.1 gi|386001314|ref|YP_005919613.1| - 0.033 14.1 1.4 3.7 7.4 0.0 3.2 3 0 0 3 3 3 0 AAA domain PRK PF00485.13 gi|386001314|ref|YP_005919613.1| - 0.035 13.6 0.1 8 5.9 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.1 gi|386001314|ref|YP_005919613.1| - 0.058 12.9 0.0 7.5 6.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|386001314|ref|YP_005919613.1| - 0.14 10.6 0.0 10 4.5 0.0 2.1 2 0 0 2 2 2 0 RNA12 protein MutS_V PF00488.16 gi|386001314|ref|YP_005919613.1| - 0.15 11.4 0.1 19 4.5 0.0 2.4 2 0 0 2 2 2 0 MutS domain V Zn-ribbon_8 PF09723.5 gi|386001314|ref|YP_005919613.1| - 2.9 7.9 11.8 1.9 8.4 0.2 3.5 3 1 0 3 3 3 0 Zinc ribbon domain NTP_transf_2 PF01909.18 gi|386001315|ref|YP_005919614.1| - 2.1e-13 50.4 0.1 2.4e-13 50.2 0.1 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain tRNA-synt_2d PF01409.15 gi|386001315|ref|YP_005919614.1| - 0.083 12.0 0.1 0.099 11.8 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) ATPase_gene1 PF09527.5 gi|386001317|ref|YP_005919616.1| - 1.9e-11 43.5 2.2 2.3e-11 43.3 1.5 1.1 1 0 0 1 1 1 1 Putative F0F1-ATPase subunit (ATPase_gene1) Rick_17kDa_Anti PF05433.10 gi|386001317|ref|YP_005919616.1| - 0.00065 19.3 1.4 0.001 18.6 1.0 1.3 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_OmpA PF13436.1 gi|386001317|ref|YP_005919616.1| - 0.00098 18.7 0.2 0.0011 18.5 0.1 1.1 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain DUF456 PF04306.8 gi|386001317|ref|YP_005919616.1| - 0.022 14.7 0.8 0.022 14.7 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF456) Gly-zipper_Omp PF13488.1 gi|386001317|ref|YP_005919616.1| - 0.065 12.8 6.6 0.068 12.8 3.8 1.6 1 1 0 1 1 1 0 Glycine zipper Bacteriocin_IIc PF10439.4 gi|386001317|ref|YP_005919616.1| - 0.077 13.1 4.8 0.11 12.6 3.3 1.4 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide CbtA PF09490.5 gi|386001317|ref|YP_005919616.1| - 0.15 11.3 0.1 0.52 9.5 0.0 1.7 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtA) SseC PF04888.7 gi|386001317|ref|YP_005919616.1| - 0.18 11.0 1.3 0.21 10.9 0.9 1.0 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family Gly-zipper_YMGG PF13441.1 gi|386001317|ref|YP_005919616.1| - 0.24 10.9 6.3 0.93 9.0 0.8 2.0 1 1 0 1 1 1 0 YMGG-like Gly-zipper DUF2892 PF11127.3 gi|386001317|ref|YP_005919616.1| - 0.4 10.5 1.9 0.56 10.0 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF1049 PF06305.6 gi|386001317|ref|YP_005919616.1| - 0.55 9.7 3.7 3.8 7.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) MadM PF03818.8 gi|386001317|ref|YP_005919616.1| - 0.7 9.5 8.1 0.38 10.3 0.7 2.1 2 0 0 2 2 2 0 Malonate/sodium symporter MadM subunit DUF2273 PF10031.4 gi|386001317|ref|YP_005919616.1| - 1.1 8.8 5.5 5.1 6.7 0.7 2.2 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) DUF4134 PF13572.1 gi|386001317|ref|YP_005919616.1| - 8.3 6.5 6.6 1.7e+02 2.3 4.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4134) Methyltransf_18 PF12847.2 gi|386001320|ref|YP_005919619.1| - 4.2e-13 49.8 0.0 7.1e-13 49.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386001320|ref|YP_005919619.1| - 6e-11 42.6 0.0 1e-10 41.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001320|ref|YP_005919619.1| - 4.6e-09 36.2 0.0 6.3e-09 35.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386001320|ref|YP_005919619.1| - 4.7e-09 35.6 0.0 7e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|386001320|ref|YP_005919619.1| - 9e-09 35.7 0.0 3.2e-08 33.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386001320|ref|YP_005919619.1| - 2.1e-08 34.4 0.0 3.4e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386001320|ref|YP_005919619.1| - 2.7e-07 30.2 0.0 4.2e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386001320|ref|YP_005919619.1| - 5.6e-05 23.1 0.0 9.1e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|386001320|ref|YP_005919619.1| - 0.0011 18.1 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|386001320|ref|YP_005919619.1| - 0.0029 17.1 0.0 0.0039 16.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.6 gi|386001320|ref|YP_005919619.1| - 0.0058 15.3 0.0 0.0078 14.9 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase MTS PF05175.9 gi|386001320|ref|YP_005919619.1| - 0.021 14.1 0.0 0.033 13.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain RrnaAD PF00398.15 gi|386001320|ref|YP_005919619.1| - 0.14 11.1 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Tic20 PF09685.5 gi|386001321|ref|YP_005919620.1| - 3.6e-34 117.0 11.5 5.7e-34 116.3 8.0 1.3 1 1 0 1 1 1 1 Tic20-like protein FtsX PF02687.16 gi|386001321|ref|YP_005919620.1| - 0.00019 21.1 1.3 0.00019 21.1 0.9 2.1 1 1 1 2 2 2 1 FtsX-like permease family DUF3989 PF13150.1 gi|386001321|ref|YP_005919620.1| - 2.8 7.4 4.5 0.45 9.9 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) 4HBT PF03061.17 gi|386001322|ref|YP_005919621.1| - 1.4e-10 41.1 0.0 2e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|386001322|ref|YP_005919621.1| - 0.0035 17.3 0.0 0.0049 16.8 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|386001322|ref|YP_005919621.1| - 0.014 15.2 0.0 0.016 14.9 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily Acetyltransf_6 PF13480.1 gi|386001322|ref|YP_005919621.1| - 0.12 12.3 0.0 0.27 11.1 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain SSF PF00474.12 gi|386001323|ref|YP_005919622.1| - 9.6e-62 208.9 45.9 1.2e-61 208.6 31.8 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family MscL PF01741.13 gi|386001325|ref|YP_005919624.1| - 2.3e-46 157.0 0.9 2.7e-46 156.8 0.6 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL UPF0547 PF10571.4 gi|386001325|ref|YP_005919624.1| - 4.2e-05 23.1 4.3 6.4e-05 22.5 3.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|386001325|ref|YP_005919624.1| - 0.0078 15.6 1.2 0.011 15.1 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DUF4577 PF15145.1 gi|386001325|ref|YP_005919624.1| - 0.011 15.6 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4577) DZR PF12773.2 gi|386001325|ref|YP_005919624.1| - 0.012 15.4 1.8 0.016 15.0 1.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF2755 PF10954.3 gi|386001325|ref|YP_005919624.1| - 0.029 14.0 0.4 0.052 13.2 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2755) zf-ribbon_3 PF13248.1 gi|386001325|ref|YP_005919624.1| - 0.052 12.7 1.1 0.078 12.2 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain FtsX PF02687.16 gi|386001325|ref|YP_005919624.1| - 1 9.1 7.0 2.4 7.9 4.9 1.6 1 1 0 1 1 1 0 FtsX-like permease family Cache_2 PF08269.6 gi|386001326|ref|YP_005919625.1| - 2.1e-23 82.0 0.0 6.3e-08 32.4 0.0 3.4 3 0 0 3 3 3 3 Cache domain WD40 PF00400.27 gi|386001327|ref|YP_005919626.1| - 1.2e-120 389.6 24.6 1.1e-11 44.1 0.1 11.3 11 0 0 11 11 11 11 WD domain, G-beta repeat NB-ARC PF00931.17 gi|386001327|ref|YP_005919626.1| - 7.2e-44 149.7 0.0 1e-43 149.2 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain Nup160 PF11715.3 gi|386001327|ref|YP_005919626.1| - 5.1e-13 48.0 17.7 0.1 10.7 0.0 9.4 1 1 7 8 8 8 6 Nucleoporin Nup120/160 Cytochrom_D1 PF02239.11 gi|386001327|ref|YP_005919626.1| - 4.3e-09 35.1 4.6 0.17 10.1 0.0 5.2 1 1 3 5 5 5 4 Cytochrome D1 heme domain Nucleoporin_N PF08801.6 gi|386001327|ref|YP_005919626.1| - 9.7e-05 21.2 0.4 3.4 6.3 0.0 5.3 1 1 2 3 3 3 2 Nup133 N terminal like MMS1_N PF10433.4 gi|386001327|ref|YP_005919626.1| - 0.0016 16.6 0.0 16 3.5 0.0 5.4 2 2 5 7 7 7 1 Mono-functional DNA-alkylating methyl methanesulfonate N-term RBB1NT PF08169.6 gi|386001327|ref|YP_005919626.1| - 0.025 14.5 0.2 17 5.3 0.0 4.6 5 0 0 5 5 5 0 RBB1NT (NUC162) domain SBP_bac_7 PF03480.8 gi|386001328|ref|YP_005919627.1| - 7.4e-41 140.1 0.0 8.9e-41 139.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 Xan_ur_permease PF00860.15 gi|386001330|ref|YP_005919629.1| - 5.4e-32 110.7 26.9 6.9e-32 110.3 18.6 1.0 1 0 0 1 1 1 1 Permease family Sulfate_transp PF00916.15 gi|386001330|ref|YP_005919629.1| - 9.3e-05 21.5 2.7 9.3e-05 21.5 1.9 4.3 3 2 1 5 5 5 1 Sulfate transporter family FUSC-like PF12805.2 gi|386001330|ref|YP_005919629.1| - 0.69 8.7 7.4 1.5 7.6 5.1 1.5 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS Adenine_deam_C PF13382.1 gi|386001331|ref|YP_005919630.1| - 3.7e-67 224.7 0.7 8.2e-67 223.6 0.1 1.9 2 0 0 2 2 2 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|386001331|ref|YP_005919630.1| - 3.9e-30 105.6 0.1 2.9e-29 102.7 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|386001331|ref|YP_005919630.1| - 2.6e-13 50.6 6.8 4.8e-07 30.0 0.4 3.5 2 1 1 3 3 3 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|386001331|ref|YP_005919630.1| - 2.7e-09 36.7 0.1 8.7e-09 35.0 0.0 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|386001331|ref|YP_005919630.1| - 7.4e-05 22.1 0.8 0.35 10.0 0.0 2.6 2 1 0 2 2 2 2 Amidohydrolase family Radical_SAM PF04055.16 gi|386001332|ref|YP_005919631.1| - 3.2e-20 72.9 0.0 1.2e-19 71.0 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|386001332|ref|YP_005919631.1| - 3e-11 43.2 0.6 1.7e-10 40.8 0.0 2.3 2 1 1 3 3 3 1 B12 binding domain DUF2802 PF10975.3 gi|386001332|ref|YP_005919631.1| - 0.18 11.5 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) SHOCT PF09851.4 gi|386001333|ref|YP_005919632.1| - 0.32 10.5 0.1 0.32 10.5 0.1 2.3 3 0 0 3 3 3 0 Short C-terminal domain NifU_N PF01592.11 gi|386001334|ref|YP_005919633.1| - 1.8e-46 157.2 0.1 2.7e-46 156.6 0.1 1.3 1 0 0 1 1 1 1 NifU-like N terminal domain DUF59 PF01883.14 gi|386001334|ref|YP_005919633.1| - 4e-06 26.7 1.6 1.2e-05 25.2 0.7 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF59 tRNA_anti-codon PF01336.20 gi|386001335|ref|YP_005919634.1| - 8.1e-09 35.2 0.3 3.6e-08 33.1 0.2 2.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.15 gi|386001335|ref|YP_005919634.1| - 9.5e-09 35.0 0.3 1.7e-08 34.2 0.2 1.4 1 0 0 1 1 1 1 DHH family S1 PF00575.18 gi|386001335|ref|YP_005919634.1| - 1.6e-06 28.0 0.2 5.5e-06 26.3 0.1 1.9 1 0 0 1 1 1 1 S1 RNA binding domain DnaJ_CXXCXGXG PF00684.14 gi|386001335|ref|YP_005919634.1| - 3.8e-06 26.8 14.1 3.8e-06 26.8 9.8 2.7 1 1 1 2 2 2 1 DnaJ central domain DZR PF12773.2 gi|386001335|ref|YP_005919634.1| - 0.026 14.3 21.3 0.21 11.4 1.5 3.3 2 1 1 3 3 3 0 Double zinc ribbon tRNA_anti_2 PF13742.1 gi|386001335|ref|YP_005919634.1| - 0.027 14.3 0.0 0.12 12.2 0.0 2.1 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain S1_2 PF13509.1 gi|386001335|ref|YP_005919634.1| - 0.033 14.1 0.0 0.084 12.8 0.0 1.7 2 0 0 2 2 2 0 S1 domain zf-C4pol PF14260.1 gi|386001335|ref|YP_005919634.1| - 1 9.3 12.5 3.1 7.8 2.0 2.8 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta Trm56 PF01994.11 gi|386001336|ref|YP_005919635.1| - 4.2e-49 165.3 0.0 5.1e-49 165.0 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 ATP-grasp_3 PF02655.9 gi|386001337|ref|YP_005919636.1| - 2.6e-38 131.4 0.0 3.4e-38 131.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|386001337|ref|YP_005919636.1| - 2.8e-16 59.8 0.0 6.2e-16 58.6 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|386001337|ref|YP_005919636.1| - 2.3e-14 52.8 0.0 3.6e-12 45.6 0.0 2.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|386001337|ref|YP_005919636.1| - 3.6e-06 26.4 0.0 0.0054 16.0 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|386001337|ref|YP_005919636.1| - 0.00017 21.0 0.0 0.023 14.0 0.0 2.5 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|386001337|ref|YP_005919636.1| - 0.018 14.4 0.0 0.063 12.7 0.0 1.9 1 1 0 1 1 1 0 RimK-like ATP-grasp domain Ins134_P3_kin PF05770.6 gi|386001337|ref|YP_005919636.1| - 0.02 13.9 0.0 0.03 13.3 0.0 1.2 1 0 0 1 1 1 0 Inositol 1, 3, 4-trisphosphate 5/6-kinase ATP-grasp PF02222.17 gi|386001337|ref|YP_005919636.1| - 0.031 13.6 0.0 0.14 11.4 0.0 1.8 2 0 0 2 2 2 0 ATP-grasp domain ATPgrasp_ST PF14397.1 gi|386001337|ref|YP_005919636.1| - 0.032 13.3 0.0 0.077 12.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp CarboxypepD_reg PF13620.1 gi|386001338|ref|YP_005919637.1| - 3.1e-25 88.0 9.5 2.4e-13 49.9 0.4 2.5 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|386001338|ref|YP_005919637.1| - 7.9e-14 51.4 0.1 1.1e-05 25.3 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) phage_tail_N PF08400.5 gi|386001338|ref|YP_005919637.1| - 6.3e-07 29.1 1.6 0.0093 15.6 0.1 3.1 2 1 0 2 2 2 2 Prophage tail fibre N-terminal PEGA PF08308.6 gi|386001338|ref|YP_005919637.1| - 0.00019 21.1 0.0 0.2 11.4 0.0 2.6 2 1 0 2 2 2 2 PEGA domain Dioxygenase_C PF00775.16 gi|386001338|ref|YP_005919637.1| - 0.00074 18.8 0.4 0.098 11.9 0.0 2.4 2 0 0 2 2 2 2 Dioxygenase Big_1 PF02369.11 gi|386001338|ref|YP_005919637.1| - 0.002 18.0 0.2 0.52 10.2 0.1 2.4 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) DUF2012 PF09430.5 gi|386001338|ref|YP_005919637.1| - 0.0051 16.6 0.0 0.8 9.5 0.0 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF2012) FlgD_ig PF13860.1 gi|386001338|ref|YP_005919637.1| - 0.29 10.9 3.0 0.76 9.5 0.1 2.6 3 0 0 3 3 3 0 FlgD Ig-like domain S-layer PF07752.6 gi|386001339|ref|YP_005919638.1| - 2.2e-135 449.8 10.7 6e-68 228.8 1.3 2.2 2 0 0 2 2 2 2 S-layer protein CARDB PF07705.6 gi|386001339|ref|YP_005919638.1| - 1.3e-05 25.1 0.2 0.00023 21.1 0.0 3.2 2 0 0 2 2 2 1 CARDB CarboxypepD_reg PF13620.1 gi|386001339|ref|YP_005919638.1| - 2.1e-05 24.4 11.1 0.033 14.2 0.5 4.7 3 1 1 4 4 4 2 Carboxypeptidase regulatory-like domain PEGA PF08308.6 gi|386001339|ref|YP_005919638.1| - 0.00019 21.1 5.8 1.3 8.8 0.0 4.3 4 0 0 4 4 4 3 PEGA domain DUF4480 PF13715.1 gi|386001339|ref|YP_005919638.1| - 0.00037 20.5 1.4 1.1 9.3 0.0 3.8 3 0 0 3 3 3 2 Domain of unknown function (DUF4480) Y_Y_Y PF07495.8 gi|386001339|ref|YP_005919638.1| - 0.021 14.5 0.3 0.4 10.4 0.0 3.1 3 0 0 3 3 3 0 Y_Y_Y domain DUF11 PF01345.13 gi|386001339|ref|YP_005919638.1| - 0.038 14.0 0.8 0.11 12.5 0.5 1.8 1 0 0 1 1 1 0 Domain of unknown function DUF11 Transglut_C PF00927.17 gi|386001339|ref|YP_005919638.1| - 0.057 13.4 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain A2M PF00207.17 gi|386001339|ref|YP_005919638.1| - 0.073 12.6 0.1 16 5.1 0.0 2.6 2 0 0 2 2 2 0 Alpha-2-macroglobulin family PrcB_C PF14343.1 gi|386001339|ref|YP_005919638.1| - 0.095 12.4 2.8 8.4 6.1 0.0 3.4 3 0 0 3 3 3 0 PrcB C-terminal AMP-binding_C_2 PF14535.1 gi|386001340|ref|YP_005919639.1| - 8.4e-30 102.6 0.4 1.9e-29 101.5 0.3 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|386001340|ref|YP_005919639.1| - 2.8e-19 68.8 0.1 7e-19 67.5 0.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|386001340|ref|YP_005919639.1| - 0.13 13.1 0.0 0.37 11.7 0.0 1.8 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain PulS_OutS PF09691.5 gi|386001341|ref|YP_005919640.1| - 0.091 12.7 0.0 0.2 11.6 0.0 1.6 2 0 0 2 2 2 0 Bacterial chaperone lipoprotein (PulS_OutS) Trypsin_2 PF13365.1 gi|386001342|ref|YP_005919641.1| - 3.4e-10 39.9 0.1 5.1e-10 39.3 0.1 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|386001342|ref|YP_005919641.1| - 1e-09 38.3 0.4 1.8e-08 34.2 0.3 2.1 1 1 0 1 1 1 1 Trypsin Peptidase_C3 PF00548.15 gi|386001342|ref|YP_005919641.1| - 0.00027 20.8 0.0 0.00057 19.7 0.0 1.6 2 0 0 2 2 2 1 3C cysteine protease (picornain 3C) Peptidase_C4 PF00863.14 gi|386001342|ref|YP_005919641.1| - 0.0091 14.9 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family C4 TPR_1 PF00515.23 gi|386001343|ref|YP_005919642.1| - 6.6e-43 142.6 0.8 4.3e-11 41.9 0.0 5.4 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386001343|ref|YP_005919642.1| - 1.2e-38 130.5 5.5 5.9e-14 51.4 1.6 3.4 2 1 1 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|386001343|ref|YP_005919642.1| - 1.7e-38 127.4 7.3 6.1e-08 31.9 0.0 5.5 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001343|ref|YP_005919642.1| - 3e-27 94.6 7.0 2e-12 47.4 0.1 3.7 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001343|ref|YP_005919642.1| - 3.6e-27 94.0 3.1 9.2e-10 38.3 0.0 3.3 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386001343|ref|YP_005919642.1| - 4.3e-24 82.4 0.0 7.9e-06 25.2 0.0 5.4 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001343|ref|YP_005919642.1| - 4.1e-23 79.5 2.2 1.9e-05 24.4 0.0 4.7 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001343|ref|YP_005919642.1| - 1e-19 69.2 9.3 3e-05 24.2 0.0 5.2 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001343|ref|YP_005919642.1| - 2.7e-16 59.6 0.1 1.1e-08 35.2 0.0 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001343|ref|YP_005919642.1| - 6.5e-15 53.6 3.4 0.0013 18.3 0.0 5.0 4 1 1 5 5 5 3 Tetratricopeptide repeat Beta_helix PF13229.1 gi|386001343|ref|YP_005919642.1| - 8.2e-14 51.6 2.8 1.2e-13 51.1 1.9 1.2 1 0 0 1 1 1 1 Right handed beta helix region TPR_9 PF13371.1 gi|386001343|ref|YP_005919642.1| - 1.7e-12 46.9 4.8 2.2e-06 27.4 0.4 2.7 1 1 1 2 2 2 2 Tetratricopeptide repeat NosD PF05048.8 gi|386001343|ref|YP_005919642.1| - 2.4e-10 40.0 11.6 1.9e-09 37.0 8.2 1.9 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Fis1_TPR_C PF14853.1 gi|386001343|ref|YP_005919642.1| - 2.6e-09 36.8 0.2 0.02 14.7 0.0 4.3 4 0 0 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat TPR_6 PF13174.1 gi|386001343|ref|YP_005919642.1| - 7.9e-08 32.2 0.6 2.8 8.5 0.0 5.4 5 0 0 5 5 5 1 Tetratricopeptide repeat DUF1565 PF07602.6 gi|386001343|ref|YP_005919642.1| - 4.3e-07 29.3 1.1 1.5e-05 24.2 0.8 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) BTAD PF03704.12 gi|386001343|ref|YP_005919642.1| - 3.5e-06 27.3 3.7 0.04 14.2 0.6 3.0 2 1 1 3 3 3 2 Bacterial transcriptional activator domain MIT PF04212.13 gi|386001343|ref|YP_005919642.1| - 6e-06 26.0 0.4 4.3 7.2 0.0 4.2 3 1 1 4 4 4 1 MIT (microtubule interacting and transport) domain Apc3 PF12895.2 gi|386001343|ref|YP_005919642.1| - 6.7e-06 26.1 2.5 0.0035 17.4 0.2 2.4 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|386001343|ref|YP_005919642.1| - 2.2e-05 24.2 4.7 0.34 10.8 0.1 4.1 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|386001343|ref|YP_005919642.1| - 0.0024 16.9 0.1 6.8 5.6 0.0 3.3 1 1 3 4 4 4 0 Tetratricopeptide repeat Pectate_lyase_3 PF12708.2 gi|386001343|ref|YP_005919642.1| - 0.0036 17.4 2.1 0.013 15.6 1.4 1.7 1 1 0 1 1 1 1 Pectate lyase superfamily protein NARP1 PF12569.3 gi|386001343|ref|YP_005919642.1| - 0.01 14.6 0.7 0.14 10.8 0.0 2.3 2 1 1 4 4 4 0 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|386001343|ref|YP_005919642.1| - 0.014 15.2 0.3 13 5.5 0.0 3.5 1 1 1 2 2 2 0 Domain of Unknown Function (DUF3856) SHNi-TPR PF10516.4 gi|386001343|ref|YP_005919642.1| - 0.017 14.3 0.0 3.5 6.9 0.0 3.5 4 0 0 4 4 4 0 SHNi-TPR Chondroitinas_B PF14592.1 gi|386001343|ref|YP_005919642.1| - 0.04 12.7 0.0 0.72 8.6 0.0 2.0 2 0 0 2 2 2 0 Chondroitinase B FAT PF02259.18 gi|386001343|ref|YP_005919642.1| - 0.048 12.6 0.1 15 4.4 0.0 3.0 1 1 1 3 3 3 0 FAT domain TPR_4 PF07721.9 gi|386001343|ref|YP_005919642.1| - 0.058 13.8 2.1 1.1e+02 3.7 0.1 4.8 4 0 0 4 4 4 0 Tetratricopeptide repeat PPR PF01535.15 gi|386001343|ref|YP_005919642.1| - 0.14 12.2 0.3 17 5.6 0.0 3.8 4 0 0 4 4 4 0 PPR repeat RPN7 PF10602.4 gi|386001343|ref|YP_005919642.1| - 0.14 11.5 0.1 24 4.2 0.0 2.9 2 1 1 3 3 3 0 26S proteasome subunit RPN7 BPS PF08947.5 gi|386001344|ref|YP_005919643.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 BPS (Between PH and SH2) CarboxypepD_reg PF13620.1 gi|386001345|ref|YP_005919644.1| - 1.8e-78 258.6 12.5 5.5e-06 26.3 0.0 14.1 14 0 0 14 14 14 13 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|386001345|ref|YP_005919644.1| - 2.3e-78 257.9 33.0 1.8e-07 30.8 0.3 13.5 13 0 0 13 13 13 12 Cna protein B-type domain DUF11 PF01345.13 gi|386001345|ref|YP_005919644.1| - 9.8e-10 38.3 0.4 7.8e-09 35.4 0.1 9.3 10 0 0 10 10 10 2 Domain of unknown function DUF11 DUF3244 PF11589.3 gi|386001345|ref|YP_005919644.1| - 8e-07 28.7 1.7 6.7 6.4 0.0 6.9 7 0 0 7 7 7 2 Domain of unknown function (DUF3244) DUF2012 PF09430.5 gi|386001345|ref|YP_005919644.1| - 2.9e-05 23.9 0.0 36 4.2 0.0 8.2 10 0 0 10 10 10 0 Protein of unknown function (DUF2012) MG1 PF11974.3 gi|386001345|ref|YP_005919644.1| - 0.0005 20.5 0.5 31 5.2 0.0 6.1 8 0 0 8 8 8 0 Alpha-2-macroglobulin MG1 domain TRAP_beta PF05753.9 gi|386001345|ref|YP_005919644.1| - 0.055 12.6 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) Big_1 PF02369.11 gi|386001345|ref|YP_005919644.1| - 0.095 12.6 0.1 0.095 12.6 0.1 8.9 12 0 0 12 12 12 0 Bacterial Ig-like domain (group 1) DUF824 PF05688.6 gi|386001345|ref|YP_005919644.1| - 0.27 10.9 4.0 7.4 6.3 0.2 4.2 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) CarboxypepD_reg PF13620.1 gi|386001346|ref|YP_005919645.1| - 0.0087 16.0 0.0 0.019 15.0 0.0 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain fn3_3 PF14686.1 gi|386001346|ref|YP_005919645.1| - 0.064 13.3 0.3 0.19 11.8 0.1 1.9 2 1 0 2 2 2 0 Polysaccharide lyase family 4, domain II PHP_C PF13263.1 gi|386001347|ref|YP_005919646.1| - 8.5e-05 21.9 0.0 0.00034 20.0 0.0 2.1 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|386001347|ref|YP_005919646.1| - 0.015 15.0 0.0 0.034 13.9 0.0 1.6 1 1 0 1 1 1 0 PHP domain AIRC PF00731.15 gi|386001348|ref|YP_005919647.1| - 7.7e-20 70.6 5.6 1.2e-19 70.0 3.9 1.3 1 0 0 1 1 1 1 AIR carboxylase ABC_tran PF00005.22 gi|386001349|ref|YP_005919648.1| - 2.6e-31 108.7 0.0 4.2e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001349|ref|YP_005919648.1| - 3.9e-16 59.8 0.1 6.2e-10 39.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|386001349|ref|YP_005919648.1| - 2.1e-07 30.4 0.0 1.9e-06 27.3 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|386001349|ref|YP_005919648.1| - 0.00083 18.5 0.0 0.0044 16.1 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|386001349|ref|YP_005919648.1| - 0.0015 18.0 0.0 0.0032 16.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|386001349|ref|YP_005919648.1| - 0.0016 17.0 0.0 0.41 9.0 0.0 2.0 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|386001349|ref|YP_005919648.1| - 0.017 14.9 0.1 0.077 12.9 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|386001349|ref|YP_005919648.1| - 0.022 14.6 0.0 0.48 10.3 0.0 2.6 3 0 0 3 3 3 0 AAA domain MobB PF03205.9 gi|386001349|ref|YP_005919648.1| - 0.043 13.5 0.0 0.92 9.2 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|386001349|ref|YP_005919648.1| - 0.078 12.3 0.0 3.7 6.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.1 gi|386001349|ref|YP_005919648.1| - 0.095 13.0 0.2 0.16 12.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|386001349|ref|YP_005919648.1| - 0.15 11.6 0.0 17 4.8 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CbiQ PF02361.11 gi|386001350|ref|YP_005919649.1| - 6.3e-36 124.0 9.6 7.7e-36 123.7 6.7 1.0 1 0 0 1 1 1 1 Cobalt transport protein CbiN PF02553.10 gi|386001351|ref|YP_005919650.1| - 9.6e-27 92.7 1.2 1.2e-26 92.5 0.8 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN PsbJ PF01788.12 gi|386001351|ref|YP_005919650.1| - 1.2 8.6 6.3 1.3 8.5 0.5 2.5 2 0 0 2 2 2 0 PsbJ CbiM PF01891.11 gi|386001352|ref|YP_005919651.1| - 3.7e-54 183.4 19.8 4.1e-54 183.2 13.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region SfsA PF03749.8 gi|386001353|ref|YP_005919652.1| - 3.8e-35 121.3 0.0 4e-35 121.2 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein SfsA PF03749.8 gi|386001354|ref|YP_005919653.1| - 1.4e-11 44.2 0.0 1.5e-11 44.1 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein Exonuc_VII_L PF02601.10 gi|386001355|ref|YP_005919654.1| - 3.8e-67 226.7 0.0 2.6e-59 200.9 0.0 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|386001355|ref|YP_005919654.1| - 2.3e-26 91.5 0.0 3.6e-26 90.9 0.0 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|386001355|ref|YP_005919654.1| - 1.5e-06 27.9 0.0 3e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Flg_hook PF02120.11 gi|386001355|ref|YP_005919654.1| - 0.21 11.2 1.2 3 7.5 0.0 2.5 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK Exonuc_VII_S PF02609.11 gi|386001356|ref|YP_005919655.1| - 1e-20 73.2 4.5 1.4e-20 72.7 3.1 1.3 1 0 0 1 1 1 1 Exonuclease VII small subunit Lipase_GDSL_2 PF13472.1 gi|386001357|ref|YP_005919656.1| - 3.6e-27 95.6 0.0 4.2e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|386001357|ref|YP_005919656.1| - 6.2e-17 62.2 0.0 8.9e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase SNF2_N PF00176.18 gi|386001359|ref|YP_005919658.1| - 2.1e-23 82.5 0.0 4e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3883 PF13020.1 gi|386001359|ref|YP_005919658.1| - 1.8e-19 69.2 0.1 5.5e-19 67.7 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3883) Helicase_C PF00271.26 gi|386001359|ref|YP_005919658.1| - 2.7e-15 55.9 0.0 7.1e-15 54.6 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|386001359|ref|YP_005919658.1| - 9.6e-09 35.3 0.0 2.5e-08 33.9 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|386001359|ref|YP_005919658.1| - 2e-06 27.3 0.0 4.2e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|386001359|ref|YP_005919658.1| - 0.00023 20.2 0.0 0.00042 19.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA PF00004.24 gi|386001359|ref|YP_005919658.1| - 0.0029 17.8 0.0 0.087 13.0 0.0 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Helicase_C_4 PF13871.1 gi|386001359|ref|YP_005919658.1| - 0.021 14.2 0.0 0.069 12.5 0.0 1.9 2 1 0 2 2 2 0 Helicase_C-like Flavi_DEAD PF07652.9 gi|386001359|ref|YP_005919658.1| - 0.035 13.8 0.0 0.089 12.5 0.0 1.7 1 0 0 1 1 1 0 Flavivirus DEAD domain Helicase_RecD PF05127.9 gi|386001359|ref|YP_005919658.1| - 0.041 13.5 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 Helicase Histone_HNS PF00816.16 gi|386001359|ref|YP_005919658.1| - 0.28 11.6 1.3 2 9.0 0.9 2.5 1 0 0 1 1 1 0 H-NS histone family HATPase_c_4 PF13749.1 gi|386001360|ref|YP_005919659.1| - 7.5e-18 64.1 0.0 1.8e-17 62.8 0.0 1.7 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|386001360|ref|YP_005919659.1| - 3.7e-15 56.1 0.0 7e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 Divergent AAA domain HTH_27 PF13463.1 gi|386001360|ref|YP_005919659.1| - 0.00035 20.8 0.1 0.3 11.4 0.0 2.8 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_42 PF06224.7 gi|386001360|ref|YP_005919659.1| - 0.002 17.5 0.1 0.0037 16.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|386001360|ref|YP_005919659.1| - 0.0068 15.7 0.1 0.043 13.2 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|386001360|ref|YP_005919659.1| - 0.1 12.2 0.0 6 6.5 0.0 3.1 3 0 0 3 3 3 0 IclR helix-turn-helix domain DUF1156 PF06634.7 gi|386001361|ref|YP_005919660.1| - 7.2e-26 89.7 1.6 1.8e-25 88.4 1.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|386001361|ref|YP_005919660.1| - 5.2e-08 32.9 3.6 1.6e-06 28.1 2.5 2.7 1 1 0 1 1 1 1 Methyltransferase domain MethyltransfD12 PF02086.10 gi|386001361|ref|YP_005919660.1| - 0.00014 21.3 0.0 0.0054 16.2 0.0 2.1 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase LEP503 PF15221.1 gi|386001361|ref|YP_005919660.1| - 0.038 13.6 0.1 0.084 12.5 0.0 1.5 1 0 0 1 1 1 0 Lens epithelial cell protein LEP503 UPF0020 PF01170.13 gi|386001361|ref|YP_005919660.1| - 0.04 13.4 0.0 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 FdhE PF04216.7 gi|386001361|ref|YP_005919660.1| - 0.041 13.6 0.5 4.2 6.9 0.1 2.6 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation Cons_hypoth95 PF03602.10 gi|386001361|ref|YP_005919660.1| - 0.044 13.1 0.5 0.72 9.2 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical protein 95 N6_N4_Mtase PF01555.13 gi|386001361|ref|YP_005919660.1| - 0.27 10.7 0.0 9.4 5.6 0.0 2.2 2 0 0 2 2 2 0 DNA methylase SNAPc_SNAP43 PF09808.4 gi|386001362|ref|YP_005919661.1| - 0.094 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 UPF0150 PF03681.10 gi|386001363|ref|YP_005919662.1| - 4.3e-21 74.2 0.5 1.4e-20 72.5 0.1 1.8 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|386001363|ref|YP_005919662.1| - 0.0012 18.8 0.0 0.002 18.1 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3832) Jag_N PF14804.1 gi|386001363|ref|YP_005919662.1| - 0.11 12.5 0.1 2.2 8.3 0.0 2.1 2 0 0 2 2 2 0 Jag N-terminus DUF499 PF04465.7 gi|386001364|ref|YP_005919663.1| - 4e-18 64.4 0.0 2.2e-17 62.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF499) DUF3717 PF12512.3 gi|386001364|ref|YP_005919663.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3717) UPF0150 PF03681.10 gi|386001365|ref|YP_005919664.1| - 7.3e-19 67.1 0.2 8.1e-19 66.9 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) RDD PF06271.7 gi|386001366|ref|YP_005919665.1| - 4.3e-18 65.5 2.7 5.4e-18 65.2 1.9 1.1 1 0 0 1 1 1 1 RDD family Hist_deacetyl PF00850.14 gi|386001367|ref|YP_005919666.1| - 2.2e-65 221.0 0.2 1.9e-64 217.9 0.1 1.9 1 1 1 2 2 2 1 Histone deacetylase domain Evr1_Alr PF04777.8 gi|386001367|ref|YP_005919666.1| - 0.034 14.0 0.1 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 Erv1 / Alr family Hydantoinase_A PF01968.13 gi|386001368|ref|YP_005919667.1| - 2.1e-57 194.4 15.7 2.5e-55 187.6 3.5 2.4 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|386001368|ref|YP_005919667.1| - 1e-35 122.8 5.4 6.6e-33 113.6 2.0 2.9 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|386001368|ref|YP_005919667.1| - 6.5e-07 28.9 0.0 6.1e-05 22.4 0.0 2.9 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|386001368|ref|YP_005919667.1| - 2.5e-06 26.0 2.1 0.0048 15.2 0.2 2.3 2 0 0 2 2 2 2 MutL protein EutA PF06277.6 gi|386001368|ref|YP_005919667.1| - 0.0027 16.4 1.5 0.41 9.1 0.2 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation protein EutA FtsA PF14450.1 gi|386001368|ref|YP_005919667.1| - 0.0029 17.4 6.5 0.49 10.2 0.1 3.8 4 0 0 4 4 4 2 Cell division protein FtsA DEDD_Tnp_IS110 PF01548.12 gi|386001368|ref|YP_005919667.1| - 0.015 14.9 0.0 0.032 13.9 0.0 1.5 1 0 0 1 1 1 0 Transposase Ppx-GppA PF02541.11 gi|386001368|ref|YP_005919667.1| - 0.019 14.1 3.6 0.2 10.8 0.1 2.7 3 0 0 3 3 3 0 Ppx/GppA phosphatase family ROK PF00480.15 gi|386001368|ref|YP_005919667.1| - 0.072 12.9 0.0 0.23 11.2 0.0 1.8 2 0 0 2 2 2 0 ROK family MreB_Mbl PF06723.8 gi|386001368|ref|YP_005919667.1| - 0.13 10.8 7.7 0.31 9.5 0.3 2.9 3 0 0 3 3 3 0 MreB/Mbl protein StbA PF06406.6 gi|386001368|ref|YP_005919667.1| - 0.16 10.8 2.3 1 8.2 0.1 2.2 2 0 0 2 2 2 0 StbA protein Fasciclin PF02469.17 gi|386001369|ref|YP_005919668.1| - 3.8e-33 114.2 0.0 4.9e-33 113.8 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain DUF4353 PF14262.1 gi|386001369|ref|YP_005919668.1| - 0.006 15.8 1.0 0.0079 15.4 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4353) SOUL PF04832.7 gi|386001370|ref|YP_005919669.1| - 2.1e-50 170.6 0.1 2.5e-50 170.4 0.0 1.1 1 0 0 1 1 1 1 SOUL heme-binding protein YwiC PF14256.1 gi|386001371|ref|YP_005919670.1| - 0.0037 17.3 0.4 0.0062 16.6 0.2 1.5 1 1 0 1 1 1 1 YwiC-like protein Peptidase_M54 PF07998.6 gi|386001373|ref|YP_005919672.1| - 1.8e-22 80.0 0.0 2.3e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Metallopep PF12044.3 gi|386001373|ref|YP_005919672.1| - 0.0014 17.1 0.2 0.002 16.6 0.1 1.1 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M10 PF00413.19 gi|386001373|ref|YP_005919672.1| - 0.0033 17.1 0.0 0.0047 16.6 0.0 1.1 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.4 gi|386001373|ref|YP_005919672.1| - 0.0095 14.8 0.0 0.012 14.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_2 PF13574.1 gi|386001373|ref|YP_005919672.1| - 0.015 15.3 0.0 0.019 15.0 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Drf_FH1 PF06346.7 gi|386001373|ref|YP_005919672.1| - 0.051 13.0 0.6 0.074 12.5 0.4 1.1 1 0 0 1 1 1 0 Formin Homology Region 1 Peptidase_M43 PF05572.8 gi|386001373|ref|YP_005919672.1| - 0.08 12.5 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_5 PF13688.1 gi|386001373|ref|YP_005919672.1| - 0.12 12.3 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 TPR_16 PF13432.1 gi|386001374|ref|YP_005919673.1| - 4.4e-27 94.1 15.1 4.1e-13 49.6 0.6 2.7 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386001374|ref|YP_005919673.1| - 6e-25 85.1 4.3 2.7e-09 36.2 0.1 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|386001374|ref|YP_005919673.1| - 3.9e-24 83.2 0.8 4.1e-08 32.5 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386001374|ref|YP_005919673.1| - 6.1e-24 83.4 1.1 1.8e-14 53.1 0.1 2.3 1 1 1 2 2 2 2 TPR repeat TPR_12 PF13424.1 gi|386001374|ref|YP_005919673.1| - 7e-23 80.3 7.5 5.7e-11 42.1 0.1 2.3 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001374|ref|YP_005919673.1| - 2.9e-16 58.2 0.3 2e-05 24.4 0.0 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001374|ref|YP_005919673.1| - 6.5e-16 58.4 3.8 4.2e-08 33.4 0.0 2.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386001374|ref|YP_005919673.1| - 1.1e-15 56.0 0.1 0.0015 18.1 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386001374|ref|YP_005919673.1| - 5.8e-11 42.0 3.4 1.6e-08 34.2 1.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|386001374|ref|YP_005919673.1| - 1.4e-10 41.1 1.8 2.5e-06 27.5 0.0 1.9 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|386001374|ref|YP_005919673.1| - 3.4e-10 39.6 11.8 0.00013 22.2 0.1 3.8 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001374|ref|YP_005919673.1| - 2.7e-08 32.9 1.7 0.079 12.7 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386001374|ref|YP_005919673.1| - 3e-08 33.6 2.0 0.029 14.8 0.0 3.6 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|386001374|ref|YP_005919673.1| - 1.4e-06 27.9 13.2 0.0062 16.4 0.3 3.5 4 0 0 4 4 3 3 Tetratricopeptide repeat TPR_3 PF07720.7 gi|386001374|ref|YP_005919673.1| - 3e-05 23.6 0.0 0.56 10.0 0.0 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|386001374|ref|YP_005919673.1| - 0.0009 19.0 0.4 0.2 11.5 0.0 2.3 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|386001374|ref|YP_005919673.1| - 0.0022 16.8 0.0 0.0039 16.0 0.0 1.3 1 1 0 1 1 1 1 NMDA receptor-regulated protein 1 TPR_4 PF07721.9 gi|386001374|ref|YP_005919673.1| - 0.0055 17.0 1.5 0.21 12.1 0.1 4.2 4 0 0 4 4 3 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|386001374|ref|YP_005919673.1| - 0.0068 16.2 0.5 0.033 13.9 0.2 2.1 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) PPR PF01535.15 gi|386001374|ref|YP_005919673.1| - 0.019 14.9 1.7 7.1 6.8 0.1 3.0 3 0 0 3 3 3 0 PPR repeat TPR_15 PF13429.1 gi|386001374|ref|YP_005919673.1| - 0.021 13.8 0.1 2.3 7.1 0.0 2.2 1 1 1 2 2 2 0 Tetratricopeptide repeat BTAD PF03704.12 gi|386001374|ref|YP_005919673.1| - 0.057 13.7 1.8 0.31 11.3 0.2 2.0 1 1 1 2 2 2 0 Bacterial transcriptional activator domain Cation_efflux PF01545.16 gi|386001375|ref|YP_005919674.1| - 3.6e-63 213.3 0.4 4.3e-63 213.0 0.3 1.0 1 0 0 1 1 1 1 Cation efflux family DUF2104 PF09877.4 gi|386001375|ref|YP_005919674.1| - 0.055 13.4 3.4 0.079 12.9 0.5 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2104) OsmC PF02566.14 gi|386001376|ref|YP_005919675.1| - 1.7e-14 53.7 0.0 2.1e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein PBP PF01161.15 gi|386001377|ref|YP_005919676.1| - 4.6e-32 110.8 0.0 6.3e-32 110.4 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein PEMT PF04191.8 gi|386001378|ref|YP_005919677.1| - 9.2e-07 28.9 0.7 1.5e-06 28.2 0.1 1.7 2 0 0 2 2 2 1 Phospholipid methyltransferase NnrU PF07298.6 gi|386001378|ref|YP_005919677.1| - 0.0065 15.8 5.7 0.0065 15.8 3.9 1.7 1 1 1 2 2 2 1 NnrU protein NnrU PF07298.6 gi|386001379|ref|YP_005919678.1| - 1.3e-07 31.1 6.7 1.7e-07 30.7 4.6 1.1 1 0 0 1 1 1 1 NnrU protein PEMT PF04191.8 gi|386001379|ref|YP_005919678.1| - 0.00097 19.2 0.9 0.00097 19.2 0.6 2.1 2 1 0 3 3 3 1 Phospholipid methyltransferase DUF3267 PF11667.3 gi|386001379|ref|YP_005919678.1| - 4 7.6 7.2 0.53 10.5 0.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3267) Neur_chan_LBD PF02931.18 gi|386001380|ref|YP_005919679.1| - 0.0014 17.7 0.6 0.36 9.9 0.0 2.1 2 0 0 2 2 2 2 Neurotransmitter-gated ion-channel ligand binding domain CbiK PF06180.6 gi|386001381|ref|YP_005919680.1| - 1.2e-59 201.5 0.0 3.2e-59 200.1 0.0 1.6 1 1 0 1 1 1 1 Cobalt chelatase (CbiK) CbiX PF01903.12 gi|386001381|ref|YP_005919680.1| - 2.8e-07 30.6 0.1 2.5e-05 24.3 0.0 2.7 3 0 0 3 3 3 1 CbiX Ferrochelatase PF00762.14 gi|386001381|ref|YP_005919680.1| - 0.18 10.7 0.0 0.71 8.7 0.0 1.9 1 1 1 2 2 2 0 Ferrochelatase HMG_CoA_synt_C PF08540.5 gi|386001383|ref|YP_005919682.1| - 5.9e-28 98.1 0.0 8.1e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|386001383|ref|YP_005919682.1| - 2.8e-17 62.8 0.0 7.6e-17 61.4 0.0 1.6 1 1 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III_C PF08541.5 gi|386001383|ref|YP_005919682.1| - 0.018 15.0 0.1 0.078 12.9 0.0 2.0 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Pyridox_ox_2 PF12900.2 gi|386001385|ref|YP_005919684.1| - 1.1e-20 73.9 0.0 1.3e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|386001385|ref|YP_005919684.1| - 1.4e-05 25.0 0.0 1.8e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Glu_synthase PF01645.12 gi|386001386|ref|YP_005919685.1| - 2.6e-12 46.3 0.0 7.2e-10 38.3 0.0 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase ELFV_dehydrog PF00208.16 gi|386001387|ref|YP_005919686.1| - 8e-74 248.2 0.3 2.3e-73 246.7 0.3 1.6 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|386001387|ref|YP_005919686.1| - 7.5e-51 171.1 0.0 1.3e-50 170.3 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NUMOD1 PF07453.8 gi|386001387|ref|YP_005919686.1| - 0.0085 15.9 0.6 4.9 7.1 0.0 2.9 3 0 0 3 3 3 2 NUMOD1 domain 2-Hacid_dh_C PF02826.14 gi|386001387|ref|YP_005919686.1| - 0.025 13.7 0.0 0.043 12.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UPF0150 PF03681.10 gi|386001389|ref|YP_005919688.1| - 3e-07 29.9 0.1 3.6e-07 29.6 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DHODB_Fe-S_bind PF10418.4 gi|386001390|ref|YP_005919689.1| - 1.1e-11 44.0 3.7 2.4e-11 42.9 2.5 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|386001390|ref|YP_005919689.1| - 0.00013 22.0 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_1 PF00175.16 gi|386001390|ref|YP_005919689.1| - 0.0076 16.8 0.0 0.015 15.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_3 PF13085.1 gi|386001390|ref|YP_005919689.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Molybdopterin PF00384.17 gi|386001391|ref|YP_005919690.1| - 9.4e-99 331.0 0.0 1.2e-98 330.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|386001391|ref|YP_005919690.1| - 1.7e-32 111.4 0.3 4.1e-31 107.0 0.0 2.9 3 0 0 3 3 3 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.1 gi|386001391|ref|YP_005919690.1| - 9.8e-18 63.7 0.1 2.7e-17 62.3 0.1 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Molybdop_Fe4S4 PF04879.11 gi|386001391|ref|YP_005919690.1| - 5.4e-16 58.1 0.5 5.4e-16 58.1 0.4 2.5 3 0 0 3 3 2 1 Molybdopterin oxidoreductase Fe4S4 domain NADH-G_4Fe-4S_3 PF10588.4 gi|386001391|ref|YP_005919690.1| - 3.2e-09 35.8 8.8 2.9e-05 23.1 0.3 2.8 2 0 0 2 2 2 2 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4 PF00037.22 gi|386001391|ref|YP_005919690.1| - 2e-07 30.3 1.2 2e-07 30.3 0.8 4.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386001391|ref|YP_005919690.1| - 2.7e-07 30.8 6.8 2.7e-07 30.8 4.7 3.9 4 1 0 4 4 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386001391|ref|YP_005919690.1| - 1e-06 28.4 5.0 1e-06 28.4 3.4 3.4 3 2 1 4 4 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386001391|ref|YP_005919690.1| - 1.3e-05 24.9 5.1 1.3e-05 24.9 3.6 3.0 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386001391|ref|YP_005919690.1| - 3.4e-05 24.0 9.2 3.4e-05 24.0 6.4 3.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386001391|ref|YP_005919690.1| - 6e-05 22.9 5.7 6e-05 22.9 4.0 3.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386001391|ref|YP_005919690.1| - 0.00046 19.9 1.4 0.00046 19.9 0.9 4.3 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386001391|ref|YP_005919690.1| - 0.0018 18.7 5.8 0.51 10.9 0.4 3.0 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|386001391|ref|YP_005919690.1| - 0.0024 18.3 6.4 0.0024 18.3 4.4 4.4 4 0 0 4 4 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|386001391|ref|YP_005919690.1| - 0.1 12.5 21.8 0.049 13.5 1.9 4.1 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|386001391|ref|YP_005919690.1| - 3.1 8.2 20.8 0.29 11.5 1.6 3.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|386001392|ref|YP_005919691.1| - 5.7e-45 151.4 2.5 9.1e-45 150.8 1.7 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|386001392|ref|YP_005919691.1| - 4.3e-21 75.7 8.0 4.5e-18 65.8 5.5 4.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|386001392|ref|YP_005919691.1| - 4.3e-14 53.0 0.3 1e-06 28.9 0.0 3.1 2 1 2 4 4 4 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|386001392|ref|YP_005919691.1| - 2.1e-13 50.5 5.1 1.9e-06 28.1 0.2 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|386001392|ref|YP_005919691.1| - 2.2e-08 33.9 2.0 1.1e-07 31.7 0.4 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|386001392|ref|YP_005919691.1| - 2.1e-06 27.9 2.1 0.006 16.8 0.1 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|386001392|ref|YP_005919691.1| - 4.3e-06 26.4 8.6 0.0059 16.1 0.1 2.8 3 0 0 3 3 2 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.12 gi|386001392|ref|YP_005919691.1| - 7.3e-06 25.2 1.7 1.1e-05 24.6 0.1 1.9 2 0 0 2 2 2 1 Thi4 family Oxidored_nitro PF00148.14 gi|386001392|ref|YP_005919691.1| - 3.8e-05 22.5 0.2 0.0027 16.4 0.0 2.3 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase GIDA PF01134.17 gi|386001392|ref|YP_005919691.1| - 4.4e-05 22.5 0.3 4.4e-05 22.5 0.2 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|386001392|ref|YP_005919691.1| - 5.1e-05 21.9 0.9 5.1e-05 21.9 0.6 1.8 2 0 0 2 2 2 1 HI0933-like protein ELFV_dehydrog PF00208.16 gi|386001392|ref|YP_005919691.1| - 0.00012 21.7 0.0 0.11 12.0 0.0 2.2 2 0 0 2 2 2 2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FAD_oxidored PF12831.2 gi|386001392|ref|YP_005919691.1| - 0.00015 21.0 1.5 0.00015 21.0 1.0 2.4 3 0 0 3 3 2 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|386001392|ref|YP_005919691.1| - 0.00017 20.7 0.0 0.39 9.8 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.19 gi|386001392|ref|YP_005919691.1| - 0.00024 20.1 1.7 0.00024 20.1 1.1 2.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|386001392|ref|YP_005919691.1| - 0.00026 20.7 0.2 0.092 12.4 0.1 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_2 PF00890.19 gi|386001392|ref|YP_005919691.1| - 0.00027 19.9 1.9 0.00027 19.9 1.3 2.9 2 1 0 3 3 3 1 FAD binding domain Shikimate_DH PF01488.15 gi|386001392|ref|YP_005919691.1| - 0.00029 20.9 0.3 0.31 11.1 0.0 2.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|386001392|ref|YP_005919691.1| - 0.00036 19.6 1.7 0.0014 17.7 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain K_oxygenase PF13434.1 gi|386001392|ref|YP_005919691.1| - 0.00094 18.1 0.0 0.69 8.7 0.0 2.6 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_8 PF13183.1 gi|386001392|ref|YP_005919691.1| - 0.0011 18.9 6.2 0.0028 17.6 4.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain NAD_binding_9 PF13454.1 gi|386001392|ref|YP_005919691.1| - 0.0017 18.1 1.4 0.042 13.6 0.4 2.7 3 0 0 3 3 2 1 FAD-NAD(P)-binding Rossmann-like PF10727.4 gi|386001392|ref|YP_005919691.1| - 0.0017 18.0 0.7 0.041 13.6 0.0 2.7 3 0 0 3 3 2 1 Rossmann-like domain FMO-like PF00743.14 gi|386001392|ref|YP_005919691.1| - 0.0023 16.2 0.0 1.4 6.9 0.0 2.3 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like F420_oxidored PF03807.12 gi|386001392|ref|YP_005919691.1| - 0.0026 18.1 0.3 1.1 9.7 0.0 3.0 3 0 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent Amino_oxidase PF01593.19 gi|386001392|ref|YP_005919691.1| - 0.0029 16.7 4.2 0.0047 16.0 0.2 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|386001392|ref|YP_005919691.1| - 0.003 16.9 2.5 0.029 13.7 0.0 2.8 2 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Fer4_18 PF13746.1 gi|386001392|ref|YP_005919691.1| - 0.0041 17.5 0.5 0.0041 17.5 0.3 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain ThiF PF00899.16 gi|386001392|ref|YP_005919691.1| - 0.01 15.6 3.9 0.11 12.3 0.2 2.6 2 0 0 2 2 2 0 ThiF family Fer4_7 PF12838.2 gi|386001392|ref|YP_005919691.1| - 0.013 15.8 0.3 0.013 15.8 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain 3HCDH_N PF02737.13 gi|386001392|ref|YP_005919691.1| - 0.013 15.1 6.1 0.14 11.7 1.2 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|386001392|ref|YP_005919691.1| - 0.017 15.2 0.8 4 7.5 0.1 2.6 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain DJ-1_PfpI PF01965.19 gi|386001392|ref|YP_005919691.1| - 0.023 14.1 0.0 0.067 12.6 0.0 1.8 1 0 0 1 1 1 0 DJ-1/PfpI family YjeF_N PF03853.10 gi|386001392|ref|YP_005919691.1| - 0.041 13.4 0.0 4.6 6.8 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus AdoHcyase_NAD PF00670.16 gi|386001392|ref|YP_005919691.1| - 0.043 13.6 0.0 0.5 10.1 0.0 2.3 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF364 PF04016.7 gi|386001392|ref|YP_005919691.1| - 0.05 12.9 0.1 1.8 7.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF364) NAD_binding_10 PF13460.1 gi|386001392|ref|YP_005919691.1| - 0.082 12.9 6.5 2.4 8.1 0.6 3.8 3 1 1 4 4 4 0 NADH(P)-binding Trp_halogenase PF04820.9 gi|386001392|ref|YP_005919691.1| - 0.097 11.2 3.4 0.062 11.9 0.4 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|386001392|ref|YP_005919691.1| - 0.19 10.6 0.6 0.33 9.8 0.4 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4_11 PF13247.1 gi|386001392|ref|YP_005919691.1| - 0.36 10.7 4.4 0.72 9.7 3.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain XdhC_C PF13478.1 gi|386001392|ref|YP_005919691.1| - 0.58 10.4 4.3 2.4 8.4 0.0 2.8 3 0 0 3 3 2 0 XdhC Rossmann domain Fer4_2 PF12797.2 gi|386001392|ref|YP_005919691.1| - 2.3 8.3 8.7 0.4 10.7 2.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Form_Nir_trans PF01226.12 gi|386001393|ref|YP_005919692.1| - 1.5e-92 309.0 26.6 1.6e-92 308.9 18.5 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter ATC_hydrolase PF14196.1 gi|386001394|ref|YP_005919693.1| - 1.2e-05 25.7 1.6 1.3e-05 25.6 1.1 1.2 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase DUF1065 PF06358.6 gi|386001394|ref|YP_005919693.1| - 0.083 12.6 0.1 0.097 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1065) V4R PF02830.13 gi|386001394|ref|YP_005919693.1| - 0.16 11.8 4.1 0.28 11.0 2.8 1.6 1 1 0 1 1 1 0 V4R domain DUF45 PF01863.12 gi|386001395|ref|YP_005919694.1| - 1.1e-23 84.1 0.0 7e-21 74.9 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function DUF45 SprT-like PF10263.4 gi|386001395|ref|YP_005919694.1| - 1.4e-05 24.8 0.0 2.6e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 SprT-like family WLM PF08325.5 gi|386001395|ref|YP_005919694.1| - 0.0063 16.4 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 WLM domain Reprolysin_5 PF13688.1 gi|386001395|ref|YP_005919694.1| - 0.14 12.1 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 TOBE PF03459.12 gi|386001396|ref|YP_005919695.1| - 2.3e-18 66.0 2.2 2.5e-18 65.9 1.5 1.0 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.5 gi|386001396|ref|YP_005919695.1| - 4.7e-05 23.2 0.5 5.6e-05 23.0 0.3 1.1 1 0 0 1 1 1 1 TOBE domain CGI-121 PF08617.5 gi|386001396|ref|YP_005919695.1| - 0.013 15.1 0.2 0.015 14.9 0.2 1.1 1 0 0 1 1 1 0 Kinase binding protein CGI-121 TOBE_3 PF12857.2 gi|386001396|ref|YP_005919695.1| - 0.058 13.2 0.3 0.073 12.9 0.2 1.2 1 0 0 1 1 1 0 TOBE-like domain Beta-Casp PF10996.3 gi|386001397|ref|YP_005919696.1| - 1e-34 119.1 0.0 1.9e-34 118.3 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|386001397|ref|YP_005919696.1| - 6.8e-15 55.2 1.6 1.4e-14 54.1 1.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|386001397|ref|YP_005919696.1| - 1.1e-12 47.4 0.0 2.8e-12 46.2 0.0 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|386001397|ref|YP_005919696.1| - 6.2e-08 32.4 0.0 1.2e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AAA_31 PF13614.1 gi|386001397|ref|YP_005919696.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Aminotran_1_2 PF00155.16 gi|386001398|ref|YP_005919697.1| - 1.2e-61 208.7 0.0 1.3e-61 208.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|386001398|ref|YP_005919697.1| - 3.4e-10 39.5 0.0 9.1e-10 38.1 0.0 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|386001398|ref|YP_005919697.1| - 1.8e-08 33.5 0.0 2.6e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|386001398|ref|YP_005919697.1| - 1.8e-06 26.4 0.0 2.7e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|386001398|ref|YP_005919697.1| - 1.1e-05 24.6 0.1 2.7e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 Beta-eliminating lyase Alliinase_C PF04864.8 gi|386001398|ref|YP_005919697.1| - 0.0049 15.5 0.0 0.059 12.0 0.0 2.0 1 1 0 2 2 2 1 Allinase NIR_SIR_ferr PF03460.12 gi|386001398|ref|YP_005919697.1| - 0.031 13.9 0.0 0.073 12.7 0.0 1.7 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain eIF-5a PF01287.15 gi|386001399|ref|YP_005919698.1| - 4.8e-10 39.2 0.3 7.8e-10 38.5 0.2 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|386001399|ref|YP_005919698.1| - 9.4e-05 22.1 0.0 0.00016 21.4 0.0 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain DUF3945 PF13101.1 gi|386001399|ref|YP_005919698.1| - 0.073 12.3 0.2 0.35 10.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3945) BRK PF07533.11 gi|386001399|ref|YP_005919698.1| - 0.12 11.9 0.0 0.25 10.8 0.0 1.6 1 0 0 1 1 1 0 BRK domain Arginase PF00491.16 gi|386001400|ref|YP_005919699.1| - 9.7e-77 257.9 0.1 1.1e-76 257.8 0.0 1.0 1 0 0 1 1 1 1 Arginase family PIN PF01850.16 gi|386001401|ref|YP_005919700.1| - 5.5e-15 55.7 0.0 6.3e-15 55.5 0.0 1.0 1 0 0 1 1 1 1 PIN domain Transketolase_N PF00456.16 gi|386001402|ref|YP_005919701.1| - 0.011 14.5 0.1 0.018 13.8 0.0 1.2 1 0 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain Mrr_cat PF04471.7 gi|386001403|ref|YP_005919702.1| - 3.8e-37 126.6 0.1 9.6e-37 125.3 0.0 1.7 2 0 0 2 2 2 1 Restriction endonuclease Mrr_N PF14338.1 gi|386001403|ref|YP_005919702.1| - 1.9e-28 98.4 0.0 4.3e-28 97.2 0.0 1.6 1 0 0 1 1 1 1 Mrr N-terminal domain PqqD PF05402.7 gi|386001403|ref|YP_005919702.1| - 0.12 12.4 0.3 0.35 10.9 0.0 1.9 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) PDDEXK_1 PF12705.2 gi|386001404|ref|YP_005919703.1| - 2.2e-16 60.0 0.1 3.4e-16 59.4 0.1 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|386001404|ref|YP_005919703.1| - 0.00014 21.8 0.0 0.00019 21.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 UvrD-helicase PF00580.16 gi|386001405|ref|YP_005919704.1| - 1.2e-47 162.7 0.0 9.7e-24 84.2 0.0 2.1 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|386001405|ref|YP_005919704.1| - 5.8e-43 147.7 0.0 8.2e-43 147.1 0.0 1.2 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|386001405|ref|YP_005919704.1| - 2.4e-09 37.2 0.0 7.5e-05 22.8 0.0 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|386001405|ref|YP_005919704.1| - 1e-06 28.4 0.5 1.1e-05 25.0 0.0 3.0 3 0 0 3 3 3 1 Part of AAA domain AAA_30 PF13604.1 gi|386001405|ref|YP_005919704.1| - 0.00069 19.2 0.1 0.38 10.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_12 PF13087.1 gi|386001405|ref|YP_005919704.1| - 0.00074 18.9 0.0 3.9 6.7 0.0 3.3 3 1 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.13 gi|386001405|ref|YP_005919704.1| - 0.0012 18.3 0.4 14 5.0 0.1 4.0 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|386001405|ref|YP_005919704.1| - 0.0015 17.7 0.1 0.22 10.7 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.1 gi|386001405|ref|YP_005919704.1| - 0.022 14.9 0.6 4.9 7.3 0.0 2.8 3 0 0 3 3 3 0 AAA domain DUF2075 PF09848.4 gi|386001405|ref|YP_005919704.1| - 0.089 11.7 0.0 3.8 6.3 0.0 2.4 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) PDDEXK_1 PF12705.2 gi|386001406|ref|YP_005919705.1| - 5.4e-24 84.9 0.0 1.1e-23 83.9 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DEDD_Tnp_IS110 PF01548.12 gi|386001407|ref|YP_005919706.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Transposase DinB_2 PF12867.2 gi|386001407|ref|YP_005919706.1| - 0.22 11.8 1.0 2.6 8.3 0.0 2.2 2 0 0 2 2 2 0 DinB superfamily Peptidase_C25 PF01364.13 gi|386001408|ref|YP_005919707.1| - 5.6e-54 183.5 0.0 9.7e-54 182.7 0.0 1.4 1 1 0 1 1 1 1 Peptidase family C25 DUF4480 PF13715.1 gi|386001408|ref|YP_005919707.1| - 0.0064 16.5 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) MarC PF01914.12 gi|386001410|ref|YP_005919709.1| - 2.8e-57 193.1 9.8 3.2e-57 192.9 6.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.13 gi|386001410|ref|YP_005919709.1| - 0.0022 17.3 6.2 0.003 16.8 3.8 1.7 1 1 0 1 1 1 1 LysE type translocator RseC_MucC PF04246.7 gi|386001410|ref|YP_005919709.1| - 0.017 14.7 0.3 0.017 14.7 0.2 2.9 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC TerC PF03741.11 gi|386001410|ref|YP_005919709.1| - 0.022 14.2 10.3 0.14 11.5 6.8 2.1 1 1 0 1 1 1 0 Integral membrane protein TerC family CCG PF02754.11 gi|386001411|ref|YP_005919710.1| - 3.1e-30 104.0 4.8 2.5e-15 56.2 0.1 2.8 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|386001411|ref|YP_005919710.1| - 9.7e-11 41.5 5.2 9.7e-11 41.5 3.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386001411|ref|YP_005919710.1| - 1.1e-10 41.6 3.3 1.1e-10 41.6 2.3 2.3 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386001411|ref|YP_005919710.1| - 9.6e-07 28.5 8.5 9.6e-07 28.5 5.9 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386001411|ref|YP_005919710.1| - 1.6e-06 28.4 8.7 2.5e-06 27.7 4.5 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386001411|ref|YP_005919710.1| - 5e-06 25.8 16.9 0.011 15.2 3.1 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|386001411|ref|YP_005919710.1| - 1.4e-05 24.6 18.6 0.00065 19.4 2.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386001411|ref|YP_005919710.1| - 5.3e-05 23.8 9.9 0.004 17.8 0.3 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|386001411|ref|YP_005919710.1| - 0.00039 20.6 17.7 0.0014 18.8 8.5 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386001411|ref|YP_005919710.1| - 0.0011 19.3 6.3 0.011 16.1 1.2 3.4 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386001411|ref|YP_005919710.1| - 0.0028 17.4 15.0 0.21 11.5 2.8 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|386001411|ref|YP_005919710.1| - 0.0038 17.4 1.4 0.0038 17.4 1.0 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain FAD-oxidase_C PF02913.14 gi|386001412|ref|YP_005919711.1| - 5.8e-56 189.5 0.5 8.2e-56 189.0 0.3 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|386001412|ref|YP_005919711.1| - 8.1e-44 148.4 2.0 8.1e-44 148.4 1.4 1.9 2 0 0 2 2 2 1 FAD binding domain Eco57I PF07669.6 gi|386001413|ref|YP_005919712.1| - 1.7e-20 73.3 0.0 5.5e-20 71.7 0.0 1.9 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.11 gi|386001413|ref|YP_005919712.1| - 5.4e-20 71.7 3.8 1e-08 34.6 0.0 3.8 4 1 0 4 4 4 2 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|386001413|ref|YP_005919712.1| - 5.4e-17 61.9 0.0 1e-16 61.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TaqI_C PF12950.2 gi|386001413|ref|YP_005919712.1| - 1.8e-13 50.2 0.0 5.2e-13 48.7 0.0 1.9 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain UPF0020 PF01170.13 gi|386001413|ref|YP_005919712.1| - 4.6e-05 23.0 0.0 0.018 14.6 0.0 2.7 2 1 0 2 2 2 2 Putative RNA methylase family UPF0020 HSDR_N PF04313.9 gi|386001413|ref|YP_005919712.1| - 0.00092 19.0 0.0 0.089 12.5 0.0 2.6 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) MTS PF05175.9 gi|386001413|ref|YP_005919712.1| - 0.0015 17.9 0.0 0.059 12.7 0.0 2.9 3 0 0 3 3 3 1 Methyltransferase small domain HSDR_N_2 PF13588.1 gi|386001413|ref|YP_005919712.1| - 0.002 17.8 0.0 0.0064 16.2 0.0 1.9 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Methyltransf_31 PF13847.1 gi|386001413|ref|YP_005919712.1| - 0.07 12.7 0.0 1.9 8.0 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Acyl_transf_3 PF01757.17 gi|386001414|ref|YP_005919713.1| - 1.1e-24 86.9 39.9 5.1e-24 84.7 27.6 1.8 1 1 0 1 1 1 1 Acyltransferase family IncA PF04156.9 gi|386001414|ref|YP_005919713.1| - 0.93 9.0 2.9 22 4.5 0.0 2.4 2 0 0 2 2 2 0 IncA protein ATP_bind_4 PF01902.12 gi|386001415|ref|YP_005919714.1| - 1.6e-46 158.4 0.0 1.9e-46 158.2 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region HTH_27 PF13463.1 gi|386001416|ref|YP_005919715.1| - 0.00011 22.4 0.1 0.00045 20.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|386001416|ref|YP_005919715.1| - 0.001 18.6 0.0 0.0067 16.1 0.0 2.1 1 1 1 2 2 2 1 MarR family HTH_20 PF12840.2 gi|386001416|ref|YP_005919715.1| - 0.057 13.2 4.4 0.23 11.2 0.0 2.9 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|386001416|ref|YP_005919715.1| - 0.064 12.9 0.1 0.19 11.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|386001416|ref|YP_005919715.1| - 0.13 11.9 0.1 0.32 10.7 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB ALF PF03752.8 gi|386001416|ref|YP_005919715.1| - 1.7 8.5 5.9 0.33 10.8 0.4 2.4 2 0 0 2 2 2 0 Short repeats of unknown function SAICAR_synt PF01259.13 gi|386001418|ref|YP_005919717.1| - 1.1e-29 103.3 0.0 3.4e-28 98.4 0.0 2.0 1 1 0 1 1 1 1 SAICAR synthetase EF_assoc_1 PF08355.7 gi|386001421|ref|YP_005919720.1| - 0.096 11.9 0.2 0.23 10.7 0.0 1.6 2 0 0 2 2 2 0 EF hand associated Radical_SAM PF04055.16 gi|386001422|ref|YP_005919721.1| - 5.5e-15 55.9 0.0 1.1e-14 54.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|386001422|ref|YP_005919721.1| - 2.2e-08 34.2 0.1 1e-07 32.1 0.0 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|386001422|ref|YP_005919721.1| - 0.035 14.1 0.0 0.061 13.3 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|386001422|ref|YP_005919721.1| - 0.075 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain polyprenyl_synt PF00348.12 gi|386001423|ref|YP_005919722.1| - 1.2e-40 139.0 0.0 1.5e-40 138.7 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Laminin_B PF00052.13 gi|386001424|ref|YP_005919723.1| - 7.6e-05 22.3 0.0 0.0063 16.1 0.0 3.1 2 2 0 2 2 2 2 Laminin B (Domain IV) PPC PF04151.10 gi|386001425|ref|YP_005919724.1| - 3.3e-20 72.8 2.7 1.5e-05 25.8 0.0 4.9 4 0 0 4 4 4 4 Bacterial pre-peptidase C-terminal domain DUF2003 PF09404.5 gi|386001425|ref|YP_005919724.1| - 0.0054 15.2 0.0 27 2.9 0.0 3.8 4 0 0 4 4 4 1 Eukaryotic protein of unknown function (DUF2003) CDC48_2 PF02933.12 gi|386001425|ref|YP_005919724.1| - 0.023 14.3 0.1 4.7 6.9 0.0 2.7 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), domain 2 BiPBP_C PF06832.7 gi|386001425|ref|YP_005919724.1| - 0.031 14.2 0.0 13 5.7 0.0 3.3 3 0 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family Herpes_UL87 PF03043.9 gi|386001425|ref|YP_005919724.1| - 0.36 9.1 0.0 5.4 5.2 0.0 2.6 4 0 0 4 4 4 0 Herpesvirus UL87 family AAT PF03417.11 gi|386001426|ref|YP_005919725.1| - 5e-62 209.2 0.0 6.2e-62 208.9 0.0 1.1 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase Abhydrolase_6 PF12697.2 gi|386001427|ref|YP_005919726.1| - 2.9e-42 145.1 3.0 4.3e-42 144.5 2.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|386001427|ref|YP_005919726.1| - 1.1e-26 93.8 0.0 1.9e-24 86.5 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|386001427|ref|YP_005919726.1| - 4e-19 68.8 0.1 5.4e-18 65.1 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|386001427|ref|YP_005919726.1| - 2.3e-06 28.0 0.1 4.3e-06 27.1 0.1 1.6 1 1 0 1 1 1 1 Thioesterase domain Ndr PF03096.9 gi|386001427|ref|YP_005919726.1| - 0.0014 17.2 0.0 0.0018 16.8 0.0 1.3 1 1 0 1 1 1 1 Ndr family Hydrolase_4 PF12146.3 gi|386001427|ref|YP_005919726.1| - 0.0016 18.2 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase DUF2048 PF09752.4 gi|386001427|ref|YP_005919726.1| - 0.0042 16.0 0.1 2 7.2 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2048) Abhydrolase_4 PF08386.5 gi|386001427|ref|YP_005919726.1| - 0.0052 16.6 0.0 0.0087 15.9 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Esterase PF00756.15 gi|386001427|ref|YP_005919726.1| - 0.011 15.1 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Peptidase_S9 PF00326.16 gi|386001427|ref|YP_005919726.1| - 0.02 14.1 0.0 0.66 9.1 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family DLH PF01738.13 gi|386001427|ref|YP_005919726.1| - 0.029 13.6 0.0 2 7.6 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|386001427|ref|YP_005919726.1| - 0.05 13.1 0.1 0.15 11.6 0.0 1.7 1 1 0 1 1 1 0 alpha/beta hydrolase fold Esterase_phd PF10503.4 gi|386001427|ref|YP_005919726.1| - 0.1 11.8 0.1 2.1 7.5 0.0 2.1 2 0 0 2 2 2 0 Esterase PHB depolymerase Orexin PF02072.10 gi|386001427|ref|YP_005919726.1| - 0.13 12.0 0.1 0.26 11.1 0.1 1.4 1 0 0 1 1 1 0 Prepro-orexin MLTD_N PF06474.7 gi|386001427|ref|YP_005919726.1| - 6.8 6.9 7.8 19 5.5 5.4 1.8 1 1 0 1 1 1 0 MltD lipid attachment motif Peptidase_C25 PF01364.13 gi|386001428|ref|YP_005919727.1| - 5.4e-40 137.5 1.3 6.5e-40 137.2 0.9 1.1 1 0 0 1 1 1 1 Peptidase family C25 Propeptide_C25 PF08126.6 gi|386001428|ref|YP_005919727.1| - 3.8e-08 32.5 0.0 9.2e-08 31.3 0.0 1.7 2 0 0 2 2 2 1 Propeptide_C25 P-II PF00543.17 gi|386001429|ref|YP_005919728.1| - 9e-37 125.6 0.8 1e-36 125.4 0.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II P19Arf_N PF07392.7 gi|386001429|ref|YP_005919728.1| - 0.031 14.4 0.6 0.051 13.7 0.4 1.3 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus Ammonium_transp PF00909.16 gi|386001430|ref|YP_005919729.1| - 8.6e-130 432.7 41.3 9.6e-130 432.6 28.6 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family RHH_1 PF01402.16 gi|386001431|ref|YP_005919730.1| - 0.0035 17.1 0.0 0.0077 16.0 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Sulfate_transp PF00916.15 gi|386001433|ref|YP_005919732.1| - 5.1e-10 38.8 6.4 5.1e-10 38.8 4.5 1.9 2 1 0 2 2 2 1 Sulfate transporter family Xan_ur_permease PF00860.15 gi|386001433|ref|YP_005919732.1| - 0.00016 20.2 17.3 0.0042 15.6 2.1 2.4 2 0 0 2 2 2 2 Permease family GATase PF00117.23 gi|386001434|ref|YP_005919733.1| - 1.9e-16 60.1 0.0 2.4e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|386001434|ref|YP_005919733.1| - 4.4e-07 29.5 0.1 1.5e-06 27.8 0.1 1.8 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|386001434|ref|YP_005919733.1| - 0.035 13.7 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HTS PF04204.11 gi|386001434|ref|YP_005919733.1| - 0.075 11.7 0.0 0.095 11.4 0.0 1.1 1 0 0 1 1 1 0 Homoserine O-succinyltransferase YEATS PF03366.11 gi|386001435|ref|YP_005919734.1| - 1.5e-08 34.2 0.4 3.1e-08 33.1 0.0 1.7 2 0 0 2 2 2 1 YEATS family Laminin_G_3 PF13385.1 gi|386001436|ref|YP_005919735.1| - 1.5e-17 64.2 1.3 3.3e-17 63.1 0.9 1.5 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily HEAT_2 PF13646.1 gi|386001437|ref|YP_005919736.1| - 2e-64 213.9 22.2 1.1e-23 83.2 1.4 5.2 2 1 3 5 5 5 4 HEAT repeats TPR_1 PF00515.23 gi|386001437|ref|YP_005919736.1| - 2.1e-61 201.1 6.4 5.8e-10 38.3 0.2 8.6 9 0 0 9 9 8 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386001437|ref|YP_005919736.1| - 2e-58 193.9 7.4 9.3e-18 63.6 0.2 5.3 4 1 2 6 6 5 5 TPR repeat TPR_2 PF07719.12 gi|386001437|ref|YP_005919736.1| - 5e-50 163.4 13.3 2.6e-07 30.0 0.2 9.1 9 0 0 9 9 8 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001437|ref|YP_005919736.1| - 4.9e-45 151.3 28.3 1.4e-10 41.5 0.7 8.0 5 4 5 10 10 8 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001437|ref|YP_005919736.1| - 4.9e-44 144.8 1.3 2.3e-06 27.3 0.0 8.4 9 0 0 9 9 7 7 Tetratricopeptide repeat HEAT_PBS PF03130.11 gi|386001437|ref|YP_005919736.1| - 1.7e-32 108.5 47.3 1.6e-06 28.0 0.4 9.2 9 0 0 9 9 8 7 PBS lyase HEAT-like repeat TPR_8 PF13181.1 gi|386001437|ref|YP_005919736.1| - 1.2e-27 93.6 2.7 0.0024 17.5 0.0 7.8 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001437|ref|YP_005919736.1| - 1.5e-23 82.5 10.8 7.1e-08 32.2 0.1 5.7 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001437|ref|YP_005919736.1| - 3e-21 73.9 43.4 0.0003 21.1 0.1 12.3 2 2 12 14 14 13 6 Tetratricopeptide repeat HEAT_EZ PF13513.1 gi|386001437|ref|YP_005919736.1| - 4.7e-21 74.6 26.8 0.00014 22.2 2.6 8.0 6 2 2 8 8 8 5 HEAT-like repeat HEAT PF02985.17 gi|386001437|ref|YP_005919736.1| - 3e-20 70.4 4.4 0.0025 17.7 0.0 8.1 8 0 0 8 8 8 3 HEAT repeat TPR_19 PF14559.1 gi|386001437|ref|YP_005919736.1| - 1.3e-19 70.2 27.3 1.7e-05 25.0 0.4 7.2 4 2 3 9 9 9 4 Tetratricopeptide repeat Arm PF00514.18 gi|386001437|ref|YP_005919736.1| - 5e-18 64.2 2.4 1.4e-05 24.6 0.0 6.4 3 2 4 7 7 7 3 Armadillo/beta-catenin-like repeat TPR_6 PF13174.1 gi|386001437|ref|YP_005919736.1| - 2.9e-17 61.8 7.7 0.025 15.0 0.0 8.4 8 1 0 8 8 7 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386001437|ref|YP_005919736.1| - 4.9e-17 61.5 16.5 8.2e-05 22.3 0.9 6.9 3 1 6 9 9 8 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001437|ref|YP_005919736.1| - 1.2e-16 59.1 7.3 0.094 12.5 0.0 7.8 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_3 PF07720.7 gi|386001437|ref|YP_005919736.1| - 1.7e-11 43.6 0.0 0.39 10.5 0.0 6.8 7 0 0 7 7 7 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|386001437|ref|YP_005919736.1| - 7.7e-09 35.5 0.0 0.00081 19.4 0.0 3.6 1 1 4 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|386001437|ref|YP_005919736.1| - 8.7e-08 32.0 5.6 2.4 7.9 0.0 6.3 3 2 2 5 5 5 2 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|386001437|ref|YP_005919736.1| - 8.1e-07 28.1 0.0 0.052 12.3 0.1 4.0 1 1 2 4 4 4 1 NMDA receptor-regulated protein 1 TPR_10 PF13374.1 gi|386001437|ref|YP_005919736.1| - 8.5e-07 28.7 28.3 0.093 12.6 0.0 8.7 10 0 0 10 10 9 2 Tetratricopeptide repeat TPR_5 PF12688.2 gi|386001437|ref|YP_005919736.1| - 2.6e-05 24.2 1.4 0.075 13.0 0.1 3.9 3 0 0 3 3 3 1 Tetratrico peptide repeat BTAD PF03704.12 gi|386001437|ref|YP_005919736.1| - 5e-05 23.6 14.7 1.8 8.8 0.3 5.7 1 1 2 6 6 6 2 Bacterial transcriptional activator domain Aconitase_B_N PF11791.3 gi|386001437|ref|YP_005919736.1| - 7.8e-05 22.5 0.4 5.5 6.7 0.0 4.1 3 1 1 4 4 4 0 Aconitate B N-terminal domain MIT PF04212.13 gi|386001437|ref|YP_005919736.1| - 0.00096 18.9 5.6 1.3 8.9 0.1 6.0 7 0 0 7 7 6 1 MIT (microtubule interacting and transport) domain ALF PF03752.8 gi|386001437|ref|YP_005919736.1| - 0.011 15.6 0.2 0.011 15.6 0.2 7.4 7 0 0 7 7 7 0 Short repeats of unknown function Adaptin_N PF01602.15 gi|386001437|ref|YP_005919736.1| - 0.025 12.9 0.0 0.78 7.9 0.0 2.2 1 1 1 2 2 2 0 Adaptin N terminal region FAT PF02259.18 gi|386001437|ref|YP_005919736.1| - 0.044 12.7 0.6 16 4.3 0.0 3.3 1 1 3 4 4 4 0 FAT domain NdhM PF10664.4 gi|386001437|ref|YP_005919736.1| - 0.067 13.1 0.3 38 4.2 0.0 3.5 1 1 2 4 4 4 0 Cyanobacterial and plastid NDH-1 subunit M NosD PF05048.8 gi|386001438|ref|YP_005919737.1| - 1.7e-55 187.7 57.6 1.4e-27 96.4 3.3 3.9 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|386001438|ref|YP_005919737.1| - 4.1e-39 133.8 71.6 3.6e-17 62.5 16.2 3.4 1 1 2 3 3 3 3 Right handed beta helix region ATC_hydrolase PF14196.1 gi|386001439|ref|YP_005919738.1| - 4.5e-06 27.1 0.2 5.2e-06 26.9 0.1 1.1 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase PUA PF01472.15 gi|386001440|ref|YP_005919739.1| - 1.2e-13 50.5 0.8 2.3e-13 49.6 0.1 1.8 2 0 0 2 2 2 1 PUA domain TGT PF01702.13 gi|386001440|ref|YP_005919739.1| - 3.3e-11 42.9 0.0 1e-09 38.0 0.0 2.2 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|386001440|ref|YP_005919739.1| - 1.1e-05 25.2 0.1 2.8e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|386001441|ref|YP_005919740.1| - 1e-42 146.0 0.0 1.3e-42 145.7 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Aconitase PF00330.15 gi|386001442|ref|YP_005919741.1| - 5.7e-100 334.9 1.2 6.6e-71 239.1 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|386001442|ref|YP_005919741.1| - 2e-18 66.7 0.0 3.5e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.8 gi|386001442|ref|YP_005919741.1| - 0.0028 16.2 0.0 0.0043 15.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Diphthamide_syn PF01866.12 gi|386001443|ref|YP_005919742.1| - 9.2e-94 314.1 0.0 1e-93 313.9 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein XPG_I PF00867.13 gi|386001444|ref|YP_005919743.1| - 3.7e-25 87.8 0.0 6.6e-25 86.9 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|386001444|ref|YP_005919743.1| - 2.9e-17 62.7 0.0 4.8e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|386001444|ref|YP_005919743.1| - 2.1e-05 24.6 0.0 4.4e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|386001444|ref|YP_005919743.1| - 0.0039 17.0 0.1 0.013 15.3 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif Fe-S_biosyn PF01521.15 gi|386001445|ref|YP_005919744.1| - 1.1e-05 25.3 0.0 1.3e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis AMP-binding PF00501.23 gi|386001446|ref|YP_005919745.1| - 3e-89 299.3 0.0 3.7e-89 299.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|386001446|ref|YP_005919745.1| - 5.9e-23 81.6 0.2 1.2e-22 80.6 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|386001448|ref|YP_005919747.1| - 4.2e-89 298.8 0.0 5e-89 298.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|386001448|ref|YP_005919747.1| - 5.9e-23 81.6 0.1 1.2e-22 80.6 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|386001449|ref|YP_005919748.1| - 9.7e-90 300.9 0.0 1.2e-89 300.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|386001449|ref|YP_005919748.1| - 2.7e-24 85.9 2.0 6.3e-24 84.7 0.4 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Radical_SAM PF04055.16 gi|386001450|ref|YP_005919749.1| - 9.8e-24 84.3 0.0 2.3e-23 83.1 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|386001450|ref|YP_005919749.1| - 1.5e-17 63.1 0.0 2.9e-17 62.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|386001450|ref|YP_005919749.1| - 4.3e-05 23.2 0.0 7.7e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 TRAM domain UPF0118 PF01594.11 gi|386001451|ref|YP_005919750.1| - 1.5e-40 139.2 36.9 2e-40 138.7 25.6 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF3953 PF13129.1 gi|386001451|ref|YP_005919750.1| - 1.6 8.4 0.0 1.6 8.4 0.0 4.4 4 1 0 4 4 4 0 Protein of unknown function (DUF3953) DBI_PRT PF02277.12 gi|386001452|ref|YP_005919751.1| - 1.1e-22 80.6 0.6 1.6e-22 80.0 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase MoeA_N PF03453.12 gi|386001453|ref|YP_005919752.1| - 7.6e-36 122.9 0.0 1.4e-35 122.0 0.0 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|386001453|ref|YP_005919752.1| - 1.5e-26 92.4 0.0 3.2e-26 91.4 0.0 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|386001453|ref|YP_005919752.1| - 3.6e-14 52.4 0.3 2.7e-13 49.6 0.1 2.6 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) PPDK_N PF01326.14 gi|386001454|ref|YP_005919753.1| - 3.2e-104 348.5 0.4 5.3e-104 347.8 0.3 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|386001454|ref|YP_005919753.1| - 1.8e-83 279.8 0.1 2.5e-83 279.3 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|386001454|ref|YP_005919753.1| - 1.8e-25 88.2 2.3 3.6e-25 87.3 1.1 1.9 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain Pyridoxal_deC PF00282.14 gi|386001455|ref|YP_005919754.1| - 5.5e-32 110.6 0.0 8.6e-32 109.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|386001455|ref|YP_005919754.1| - 1.4e-05 24.0 0.0 2.2e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|386001455|ref|YP_005919754.1| - 0.00022 20.4 0.0 0.00026 20.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase TRAM PF01938.15 gi|386001456|ref|YP_005919755.1| - 1.5e-13 50.3 1.7 1.7e-13 50.1 1.2 1.1 1 0 0 1 1 1 1 TRAM domain TRAM PF01938.15 gi|386001457|ref|YP_005919756.1| - 1.3e-12 47.2 0.8 1.5e-12 47.0 0.6 1.1 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.19 gi|386001457|ref|YP_005919756.1| - 0.086 12.3 0.2 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Nol1_Nop2_Fmu PF01189.12 gi|386001458|ref|YP_005919757.1| - 3.2e-44 151.3 0.0 3.9e-44 151.1 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_26 PF13659.1 gi|386001458|ref|YP_005919757.1| - 5e-09 36.2 0.2 9.4e-09 35.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|386001458|ref|YP_005919757.1| - 1.1e-05 25.5 0.0 1.7e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_18 PF12847.2 gi|386001458|ref|YP_005919757.1| - 5.9e-05 23.6 0.0 0.00011 22.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|386001458|ref|YP_005919757.1| - 0.003 17.1 0.0 0.0044 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|386001458|ref|YP_005919757.1| - 0.0051 16.4 0.0 0.007 15.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Nol1_Nop2_Fmu_2 PF13636.1 gi|386001459|ref|YP_005919758.1| - 2.4e-14 53.2 0.0 2.8e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis Radical_SAM PF04055.16 gi|386001460|ref|YP_005919759.1| - 3.6e-12 46.7 0.0 5.8e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily PBP_like_2 PF12849.2 gi|386001461|ref|YP_005919760.1| - 4.8e-38 131.2 1.0 2e-37 129.1 0.7 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|386001461|ref|YP_005919760.1| - 8.3e-14 50.9 0.0 1.1e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|386001461|ref|YP_005919760.1| - 0.0086 15.7 0.0 0.021 14.4 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Lsm_C PF14894.1 gi|386001461|ref|YP_005919760.1| - 0.16 11.5 0.4 0.38 10.2 0.3 1.7 1 0 0 1 1 1 0 Lsm C-terminal HTH_20 PF12840.2 gi|386001464|ref|YP_005919763.1| - 5.5e-09 35.7 0.0 8.5e-09 35.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|386001464|ref|YP_005919763.1| - 4.9e-05 22.8 0.1 0.00049 19.7 0.0 2.5 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family FUR PF01475.14 gi|386001464|ref|YP_005919763.1| - 0.032 14.1 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family ABC_tran PF00005.22 gi|386001466|ref|YP_005919765.1| - 3.9e-30 104.9 0.0 5.4e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001466|ref|YP_005919765.1| - 1.1e-15 58.3 0.1 1.3e-09 38.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|386001466|ref|YP_005919765.1| - 0.006 16.0 0.1 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|386001466|ref|YP_005919765.1| - 0.006 16.9 0.1 0.01 16.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|386001466|ref|YP_005919765.1| - 0.0076 16.3 0.1 0.04 14.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|386001466|ref|YP_005919765.1| - 0.013 14.6 0.1 2.1 7.4 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|386001466|ref|YP_005919765.1| - 0.1 12.4 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|386001466|ref|YP_005919765.1| - 0.11 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|386001466|ref|YP_005919765.1| - 0.13 12.0 0.4 0.47 10.2 0.3 2.1 1 1 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|386001466|ref|YP_005919765.1| - 0.13 12.4 0.2 0.47 10.6 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|386001466|ref|YP_005919765.1| - 0.14 11.8 0.1 0.53 9.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 SMC_N PF02463.14 gi|386001466|ref|YP_005919765.1| - 0.15 11.3 0.0 3.2 6.9 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|386001466|ref|YP_005919765.1| - 0.21 11.5 2.4 2.3 8.1 1.7 2.3 1 1 0 1 1 1 0 AAA ATPase domain ABC2_membrane PF01061.19 gi|386001467|ref|YP_005919766.1| - 2.3e-30 105.3 13.4 3.3e-30 104.8 9.3 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|386001467|ref|YP_005919766.1| - 3e-16 59.4 17.4 3.8e-16 59.0 12.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|386001467|ref|YP_005919766.1| - 2.9e-09 36.1 15.9 5.2e-09 35.3 11.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|386001467|ref|YP_005919766.1| - 0.00022 20.4 18.9 0.00075 18.7 13.3 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_6 PF06182.6 gi|386001467|ref|YP_005919766.1| - 0.0094 15.5 9.7 0.012 15.1 5.7 1.8 2 1 0 2 2 2 1 ABC-2 family transporter protein SBP_bac_3 PF00497.15 gi|386001470|ref|YP_005919769.1| - 1.3e-34 119.4 0.0 3.1e-34 118.2 0.0 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 dCMP_cyt_deam_2 PF08211.6 gi|386001470|ref|YP_005919769.1| - 4.9e-10 39.4 0.1 8.2e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_1 PF00383.17 gi|386001470|ref|YP_005919769.1| - 5.8e-06 25.8 0.0 9.7e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Phosphonate-bd PF12974.2 gi|386001470|ref|YP_005919769.1| - 0.014 14.8 0.0 0.086 12.2 0.0 2.0 1 1 1 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein NT5C PF06941.7 gi|386001471|ref|YP_005919770.1| - 1.4e-12 47.5 0.0 1.7e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) MarR_2 PF12802.2 gi|386001472|ref|YP_005919771.1| - 0.001 18.7 0.3 0.002 17.7 0.0 1.6 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|386001472|ref|YP_005919771.1| - 0.0048 16.5 0.2 0.01 15.5 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|386001472|ref|YP_005919771.1| - 0.025 14.1 0.0 0.051 13.0 0.0 1.7 1 1 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.17 gi|386001472|ref|YP_005919771.1| - 0.053 13.2 0.2 0.26 11.0 0.0 2.2 2 1 0 2 2 2 0 MarR family LSM PF01423.17 gi|386001473|ref|YP_005919772.1| - 0.0012 18.3 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 LSM domain HTH_20 PF12840.2 gi|386001476|ref|YP_005919775.1| - 0.00017 21.3 0.1 0.00031 20.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HemN_C PF06969.11 gi|386001476|ref|YP_005919775.1| - 0.13 12.3 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain AAA_assoc_C PF09821.4 gi|386001476|ref|YP_005919775.1| - 0.16 12.2 0.1 0.26 11.5 0.0 1.3 1 0 0 1 1 1 0 C-terminal AAA-associated domain Nitroreductase PF00881.19 gi|386001478|ref|YP_005919777.1| - 4.8e-25 88.2 0.3 8.3e-25 87.5 0.0 1.5 2 0 0 2 2 2 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|386001478|ref|YP_005919777.1| - 0.046 12.9 0.1 0.39 9.8 0.0 2.2 2 1 1 3 3 3 0 Putative TM nitroreductase Pentapeptide_3 PF13576.1 gi|386001479|ref|YP_005919778.1| - 8.6e-19 67.1 38.7 1.1e-08 34.8 4.7 4.8 1 1 4 5 5 5 5 Pentapeptide repeats (9 copies) Ni_hydr_CYTB PF01292.15 gi|386001479|ref|YP_005919778.1| - 0.15 11.4 3.0 0.28 10.5 2.1 1.4 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 DUF763 PF05559.6 gi|386001480|ref|YP_005919779.1| - 1.5e-17 63.5 0.0 1.9e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF763) PPC PF04151.10 gi|386001482|ref|YP_005919781.1| - 1.4e-05 26.0 10.5 0.00016 22.5 1.4 4.3 3 2 0 3 3 3 2 Bacterial pre-peptidase C-terminal domain Gate PF07670.9 gi|386001483|ref|YP_005919782.1| - 3.2e-07 30.2 19.3 1.8e-05 24.6 1.3 3.0 2 1 1 3 3 3 2 Nucleoside recognition DHQS PF01959.11 gi|386001484|ref|YP_005919783.1| - 6.5e-148 492.1 1.9 7.3e-148 491.9 1.3 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) OapA PF04225.7 gi|386001484|ref|YP_005919783.1| - 0.0082 16.0 0.1 0.32 10.9 0.0 2.8 3 0 0 3 3 3 1 Opacity-associated protein A LysM-like domain DUF2577 PF10844.3 gi|386001484|ref|YP_005919783.1| - 0.013 15.5 0.1 0.4 10.7 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2577) Hint PF01079.15 gi|386001484|ref|YP_005919783.1| - 0.15 11.2 0.1 10 5.2 0.0 2.3 2 0 0 2 2 2 0 Hint module DHquinase_I PF01487.10 gi|386001485|ref|YP_005919784.1| - 1.4e-42 145.8 0.0 1.9e-42 145.4 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase Prismane PF03063.15 gi|386001486|ref|YP_005919785.1| - 2.3e-89 300.1 3.6 7.9e-75 252.1 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_18 PF13746.1 gi|386001486|ref|YP_005919785.1| - 1.8e-07 31.4 9.3 0.00013 22.3 0.4 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386001486|ref|YP_005919785.1| - 1.1e-06 28.2 21.1 5.6e-05 22.8 8.2 4.0 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386001486|ref|YP_005919785.1| - 1.2e-06 28.4 20.3 2.7e-06 27.3 7.2 3.5 2 2 2 4 4 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386001486|ref|YP_005919785.1| - 2.1e-05 24.7 23.1 6.2e-05 23.1 8.5 4.0 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386001486|ref|YP_005919785.1| - 0.0001 21.9 19.6 0.0024 17.7 2.5 4.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386001486|ref|YP_005919785.1| - 0.00031 21.4 8.2 0.065 13.9 0.3 3.6 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|386001486|ref|YP_005919785.1| - 0.00035 20.8 6.3 0.0085 16.4 0.5 3.9 4 0 0 4 4 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386001486|ref|YP_005919785.1| - 0.00041 19.8 21.1 0.0008 18.9 2.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386001486|ref|YP_005919785.1| - 0.0015 18.8 12.8 0.0015 18.8 8.9 4.2 3 2 2 5 5 4 3 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|386001486|ref|YP_005919785.1| - 0.0069 15.9 1.0 0.0069 15.9 0.7 2.7 1 1 1 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.2 gi|386001486|ref|YP_005919785.1| - 0.019 15.2 4.5 0.019 15.2 3.1 4.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|386001486|ref|YP_005919785.1| - 0.83 9.5 24.1 0.078 12.8 9.1 3.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain CO_dh PF02552.11 gi|386001487|ref|YP_005919786.1| - 2.8e-36 124.5 0.0 3.3e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|386001487|ref|YP_005919786.1| - 0.0015 18.3 0.1 0.0043 16.8 0.0 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain HsdM_N PF12161.3 gi|386001487|ref|YP_005919786.1| - 0.074 13.4 0.2 0.11 12.9 0.1 1.2 1 0 0 1 1 1 0 HsdM N-terminal domain CdhC PF03598.10 gi|386001488|ref|YP_005919787.1| - 3.1e-165 549.6 0.0 4.6e-165 549.0 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit RPA_C PF08784.6 gi|386001488|ref|YP_005919787.1| - 0.0039 17.5 0.0 0.0085 16.4 0.0 1.6 1 0 0 1 1 1 1 Replication protein A C terminal Nitrate_red_gam PF02665.9 gi|386001489|ref|YP_005919788.1| - 3.1e-05 23.4 16.4 0.0005 19.4 2.7 2.7 1 1 2 3 3 3 2 Nitrate reductase gamma subunit CCG PF02754.11 gi|386001490|ref|YP_005919789.1| - 1.2e-26 92.4 11.5 2.2e-13 49.9 0.1 2.9 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|386001490|ref|YP_005919789.1| - 1.5e-08 34.5 3.5 1.5e-08 34.5 2.4 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386001490|ref|YP_005919789.1| - 1e-07 32.1 3.7 1e-07 32.1 2.6 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386001490|ref|YP_005919789.1| - 1.4e-05 25.4 15.4 0.1 13.0 0.2 4.4 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386001490|ref|YP_005919789.1| - 1.6e-05 24.5 6.8 1.6e-05 24.5 4.7 2.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386001490|ref|YP_005919789.1| - 2.6e-05 24.5 8.3 2.6e-05 24.5 5.7 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386001490|ref|YP_005919789.1| - 0.0005 20.7 4.8 0.0005 20.7 3.3 2.7 3 1 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|386001490|ref|YP_005919789.1| - 0.0053 16.5 8.1 0.53 10.1 0.3 3.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Apc4_WD40 PF12894.2 gi|386001490|ref|YP_005919789.1| - 0.12 11.8 0.4 0.24 10.9 0.3 1.5 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain Fer4_2 PF12797.2 gi|386001490|ref|YP_005919789.1| - 0.53 10.3 14.6 0.83 9.7 0.9 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|386001490|ref|YP_005919789.1| - 0.61 10.3 25.2 0.044 14.0 8.8 4.3 4 1 1 5 5 5 0 4Fe-4S dicluster domain FMN_red PF03358.10 gi|386001491|ref|YP_005919790.1| - 4.8e-27 94.3 0.0 7.1e-27 93.7 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|386001491|ref|YP_005919790.1| - 3.2e-15 56.1 0.0 4.9e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Transgly_assoc PF04226.8 gi|386001493|ref|YP_005919792.1| - 5.2e-11 42.4 12.3 5.2e-11 42.4 8.5 2.2 1 1 1 2 2 2 1 Transglycosylase associated protein ECF-ribofla_trS PF07155.7 gi|386001493|ref|YP_005919792.1| - 0.015 15.0 10.3 0.017 14.8 7.2 1.1 1 0 0 1 1 1 0 ECF-type riboflavin transporter, S component MadM PF03818.8 gi|386001493|ref|YP_005919792.1| - 1 8.9 9.8 0.22 11.1 2.8 2.1 2 0 0 2 2 2 0 Malonate/sodium symporter MadM subunit Gly-zipper_YMGG PF13441.1 gi|386001493|ref|YP_005919792.1| - 1.4 8.5 18.3 1.4 8.5 5.7 2.1 1 1 1 2 2 2 0 YMGG-like Gly-zipper Vma12 PF11712.3 gi|386001493|ref|YP_005919792.1| - 1.7 8.3 3.4 2.4 7.8 2.4 1.2 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF1212 PF06738.7 gi|386001493|ref|YP_005919792.1| - 2 7.8 6.9 2.6 7.4 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) ABC2_membrane_4 PF12730.2 gi|386001493|ref|YP_005919792.1| - 2.3 7.3 13.2 5.6 6.0 9.1 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein Gly-zipper_Omp PF13488.1 gi|386001493|ref|YP_005919792.1| - 4.6 6.9 20.3 4.1 7.1 6.7 2.2 1 1 1 2 2 2 0 Glycine zipper FmdE PF02663.9 gi|386001495|ref|YP_005919794.1| - 5.2e-29 100.7 0.0 1.1e-28 99.7 0.0 1.6 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon PadR PF03551.9 gi|386001495|ref|YP_005919794.1| - 1.2e-13 50.6 0.0 2.7e-13 49.4 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family zf-dskA_traR PF01258.12 gi|386001495|ref|YP_005919794.1| - 4e-07 29.6 1.6 8.3e-07 28.6 1.1 1.6 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger HTH_27 PF13463.1 gi|386001495|ref|YP_005919794.1| - 0.00035 20.8 0.0 0.00064 19.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain FUR PF01475.14 gi|386001495|ref|YP_005919794.1| - 0.00054 19.8 0.0 0.0013 18.6 0.0 1.6 1 0 0 1 1 1 1 Ferric uptake regulator family DUF2129 PF09902.4 gi|386001495|ref|YP_005919794.1| - 0.001 18.8 0.3 0.0024 17.6 0.2 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2129) Methyltransf_11 PF08241.7 gi|386001496|ref|YP_005919795.1| - 2.8e-13 50.1 0.0 4.3e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386001496|ref|YP_005919795.1| - 6.2e-12 45.3 0.0 6.7e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386001496|ref|YP_005919795.1| - 7.5e-11 41.5 0.0 9.3e-11 41.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|386001496|ref|YP_005919795.1| - 2e-06 28.1 0.0 2.7e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386001496|ref|YP_005919795.1| - 8.3e-06 26.1 0.0 1.3e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|386001496|ref|YP_005919795.1| - 1.4e-05 24.8 0.0 1.5e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.2 gi|386001496|ref|YP_005919795.1| - 0.00013 22.4 0.0 0.00018 22.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386001496|ref|YP_005919795.1| - 0.0013 18.7 0.0 0.0017 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001496|ref|YP_005919795.1| - 0.011 15.4 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|386001496|ref|YP_005919795.1| - 0.13 11.5 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase small domain UPF0066 PF01980.11 gi|386001497|ref|YP_005919796.1| - 1.1e-34 118.9 0.0 1.5e-34 118.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 SBP_bac_5 PF00496.17 gi|386001498|ref|YP_005919797.1| - 1.4e-78 264.3 0.0 1.9e-78 263.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Peripla_BP_2 PF01497.13 gi|386001499|ref|YP_005919798.1| - 3.8e-27 94.9 0.0 5.7e-27 94.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein MCR_C PF04609.7 gi|386001499|ref|YP_005919798.1| - 0.069 11.9 0.0 0.14 10.9 0.0 1.4 2 0 0 2 2 2 0 Methyl-coenzyme M reductase operon protein C Peripla_BP_2 PF01497.13 gi|386001500|ref|YP_005919799.1| - 2.4e-22 79.2 0.0 4e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|386001501|ref|YP_005919800.1| - 2.5e-95 318.9 28.5 3.1e-95 318.5 19.8 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|386001501|ref|YP_005919800.1| - 7.4e-07 28.7 17.6 7.4e-07 28.7 12.2 2.2 2 1 1 3 3 3 1 ABC 3 transport family DUF1049 PF06305.6 gi|386001501|ref|YP_005919800.1| - 0.0045 16.4 0.3 0.0045 16.4 0.2 3.2 4 0 0 4 4 4 1 Protein of unknown function (DUF1049) BPD_transp_2 PF02653.11 gi|386001501|ref|YP_005919800.1| - 0.011 14.6 29.4 0.0044 16.0 15.0 2.4 1 1 1 2 2 2 0 Branched-chain amino acid transport system / permease component DUF3087 PF11286.3 gi|386001501|ref|YP_005919800.1| - 2.5 7.2 4.2 1.3 8.1 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) ABC_tran PF00005.22 gi|386001502|ref|YP_005919801.1| - 9.4e-30 103.6 0.0 1.3e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001502|ref|YP_005919801.1| - 5.2e-14 52.9 0.0 5.7e-08 33.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|386001502|ref|YP_005919801.1| - 8.2e-07 28.4 0.0 2.5e-05 23.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|386001502|ref|YP_005919801.1| - 7.7e-05 23.1 0.0 0.0001 22.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|386001502|ref|YP_005919801.1| - 0.00012 22.3 0.0 0.0012 18.9 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|386001502|ref|YP_005919801.1| - 0.0026 17.7 0.0 0.0039 17.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|386001502|ref|YP_005919801.1| - 0.0031 17.2 0.0 0.0054 16.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|386001502|ref|YP_005919801.1| - 0.0047 16.3 0.1 1.3 8.3 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain AAA_14 PF13173.1 gi|386001502|ref|YP_005919801.1| - 0.008 16.0 0.0 0.32 10.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|386001502|ref|YP_005919801.1| - 0.0084 15.6 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|386001502|ref|YP_005919801.1| - 0.036 13.9 0.1 0.39 10.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|386001502|ref|YP_005919801.1| - 0.047 13.0 0.1 0.16 11.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|386001502|ref|YP_005919801.1| - 0.12 10.7 0.0 0.24 9.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain Peripla_BP_2 PF01497.13 gi|386001503|ref|YP_005919802.1| - 9.1e-21 74.0 0.0 1.3e-20 73.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_18 PF12847.2 gi|386001504|ref|YP_005919803.1| - 2.9e-12 47.1 0.0 5.3e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386001504|ref|YP_005919803.1| - 8.8e-09 35.1 0.0 1.4e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386001504|ref|YP_005919803.1| - 7.2e-08 32.8 0.0 1.2e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001504|ref|YP_005919803.1| - 1.9e-07 30.9 0.0 2.7e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|386001504|ref|YP_005919803.1| - 4.1e-07 29.2 0.0 8e-07 28.3 0.0 1.4 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|386001504|ref|YP_005919803.1| - 7.4e-07 29.4 0.0 1.4e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386001504|ref|YP_005919803.1| - 8.9e-06 25.7 0.0 1.3e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386001504|ref|YP_005919803.1| - 1.2e-05 25.6 0.0 2.4e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|386001504|ref|YP_005919803.1| - 2.3e-05 23.6 0.0 3.7e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.9 gi|386001504|ref|YP_005919803.1| - 2.9e-05 23.4 0.0 4.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|386001504|ref|YP_005919803.1| - 0.00078 18.6 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.7 gi|386001504|ref|YP_005919803.1| - 0.0011 17.8 0.0 0.0016 17.3 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Cons_hypoth95 PF03602.10 gi|386001504|ref|YP_005919803.1| - 0.0012 18.3 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PCMT PF01135.14 gi|386001504|ref|YP_005919803.1| - 0.0018 17.8 0.0 0.0026 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|386001504|ref|YP_005919803.1| - 0.0021 17.2 0.0 0.0043 16.2 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|386001504|ref|YP_005919803.1| - 0.0021 17.2 0.0 0.0035 16.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.11 gi|386001504|ref|YP_005919803.1| - 0.017 14.7 0.0 0.42 10.1 0.0 2.4 2 1 1 3 3 3 0 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|386001504|ref|YP_005919803.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.6 gi|386001504|ref|YP_005919803.1| - 0.14 10.7 0.0 0.21 10.2 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Peripla_BP_2 PF01497.13 gi|386001505|ref|YP_005919804.1| - 3e-25 88.7 0.0 4.4e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ZapA PF05164.8 gi|386001505|ref|YP_005919804.1| - 0.15 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Cell division protein ZapA RNA_pol_A_bac PF01000.21 gi|386001506|ref|YP_005919805.1| - 2.2e-23 82.5 0.0 3.8e-23 81.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|386001506|ref|YP_005919805.1| - 3.6e-13 48.4 0.0 4.4e-13 48.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.22 gi|386001506|ref|YP_005919805.1| - 4.5e-09 35.5 13.3 3.8e-06 26.2 2.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386001506|ref|YP_005919805.1| - 1.1e-07 32.0 9.3 1.1e-07 32.0 6.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386001506|ref|YP_005919805.1| - 4.3e-07 30.0 9.2 4.3e-07 30.0 6.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386001506|ref|YP_005919805.1| - 1e-06 28.3 9.0 1e-06 28.3 6.2 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386001506|ref|YP_005919805.1| - 2.5e-05 24.9 10.7 0.0015 19.1 0.4 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|386001506|ref|YP_005919805.1| - 0.00016 21.4 2.3 0.00016 21.4 1.6 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|386001506|ref|YP_005919805.1| - 0.00057 19.6 4.4 0.00057 19.6 3.0 3.6 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|386001506|ref|YP_005919805.1| - 0.0026 17.7 11.9 0.17 11.9 5.8 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386001506|ref|YP_005919805.1| - 0.0049 17.0 4.8 0.0049 17.0 3.4 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|386001506|ref|YP_005919805.1| - 0.0058 17.0 6.0 0.0058 17.0 4.2 3.7 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386001506|ref|YP_005919805.1| - 0.0087 16.5 1.8 0.0087 16.5 1.2 2.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|386001506|ref|YP_005919805.1| - 0.026 14.3 4.4 0.026 14.3 3.1 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|386001506|ref|YP_005919805.1| - 0.13 12.1 5.0 1.5 8.7 2.9 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|386001506|ref|YP_005919805.1| - 5.4 7.4 9.6 40 4.6 6.7 2.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|386001506|ref|YP_005919805.1| - 6.9 7.1 17.4 0.43 11.0 5.6 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Ribosomal_S11 PF00411.14 gi|386001507|ref|YP_005919806.1| - 1.6e-41 140.8 0.9 1.9e-41 140.6 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|386001508|ref|YP_005919807.1| - 1.2e-13 50.2 0.9 1.9e-13 49.6 0.1 1.8 2 0 0 2 2 2 1 S4 domain IcmF-related PF06761.7 gi|386001508|ref|YP_005919807.1| - 0.032 13.5 0.1 0.04 13.2 0.1 1.2 1 0 0 1 1 1 0 Intracellular multiplication and human macrophage-killing Ribosomal_S13 PF00416.17 gi|386001509|ref|YP_005919808.1| - 5.8e-28 97.4 2.3 7.1e-28 97.1 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|386001509|ref|YP_005919808.1| - 0.032 12.7 0.0 0.034 12.6 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) EPSP_synthase PF00275.15 gi|386001510|ref|YP_005919809.1| - 4.5e-107 358.0 0.2 5.3e-107 357.8 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PepSY_2 PF13670.1 gi|386001510|ref|YP_005919809.1| - 0.046 13.6 0.0 0.17 11.7 0.0 2.0 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain RrnaAD PF00398.15 gi|386001511|ref|YP_005919810.1| - 4.5e-53 179.9 0.0 5.1e-53 179.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|386001511|ref|YP_005919810.1| - 4.6e-09 36.3 0.0 6.6e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386001511|ref|YP_005919810.1| - 9.5e-05 22.9 0.0 0.00014 22.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386001511|ref|YP_005919810.1| - 0.00022 20.8 0.0 0.00033 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001511|ref|YP_005919810.1| - 0.00033 20.3 0.0 0.00048 19.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386001511|ref|YP_005919810.1| - 0.0013 19.1 0.0 0.0024 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|386001511|ref|YP_005919810.1| - 0.0062 16.0 0.0 0.04 13.4 0.0 1.9 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|386001511|ref|YP_005919810.1| - 0.02 14.2 0.0 0.03 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|386001511|ref|YP_005919810.1| - 0.088 13.2 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|386001511|ref|YP_005919810.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.1 gi|386001511|ref|YP_005919810.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.7 gi|386001511|ref|YP_005919810.1| - 0.17 10.7 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase DUF655 PF04919.7 gi|386001512|ref|YP_005919811.1| - 2.5e-60 203.3 0.0 2.8e-60 203.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|386001512|ref|YP_005919811.1| - 2.6e-06 27.2 0.0 5.6e-06 26.2 0.0 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|386001512|ref|YP_005919811.1| - 9.2e-06 25.6 0.0 1.7e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|386001513|ref|YP_005919812.1| - 2.5e-12 46.8 1.5 2.9e-12 46.6 1.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 CRISPR_Cse2 PF09485.5 gi|386001513|ref|YP_005919812.1| - 0.13 12.3 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein Cse2 (CRISPR_cse2) Ribosomal_L21e PF01157.13 gi|386001514|ref|YP_005919813.1| - 6.1e-29 99.7 0.3 6.7e-29 99.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|386001515|ref|YP_005919814.1| - 4.2e-10 39.6 0.0 7.2e-09 35.6 0.0 2.3 2 0 0 2 2 2 1 THUMP domain Methyltrn_RNA_2 PF04013.7 gi|386001516|ref|YP_005919815.1| - 1.6e-55 187.8 0.0 1.7e-55 187.6 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SAMP PF05924.6 gi|386001516|ref|YP_005919815.1| - 0.13 11.4 0.2 0.28 10.3 0.1 1.6 1 0 0 1 1 1 0 SAMP Motif Peptidase_S8 PF00082.17 gi|386001517|ref|YP_005919816.1| - 1.2e-23 83.6 0.0 1.7e-19 70.1 0.0 2.1 2 0 0 2 2 2 2 Subtilase family PPC PF04151.10 gi|386001517|ref|YP_005919816.1| - 0.038 14.9 0.0 0.17 12.8 0.0 2.2 2 1 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain VCBS PF13517.1 gi|386001518|ref|YP_005919817.1| - 7.9e-33 112.6 35.8 3.4e-09 36.9 1.5 7.5 4 2 5 9 9 9 8 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|386001518|ref|YP_005919817.1| - 1.4e-29 101.0 59.1 2.6e-06 26.9 0.0 9.6 9 1 0 9 9 9 7 FG-GAP repeat BBS2_Mid PF14783.1 gi|386001518|ref|YP_005919817.1| - 1.2e-19 70.1 0.3 0.022 14.5 0.0 7.4 7 0 0 7 7 7 5 Ciliary BBSome complex subunit 2, middle region PQQ_3 PF13570.1 gi|386001518|ref|YP_005919817.1| - 9.3e-08 32.1 30.7 0.0052 17.0 0.0 7.8 7 2 1 8 8 8 3 PQQ-like domain TcdB_toxin_midN PF12256.3 gi|386001518|ref|YP_005919817.1| - 6.5e-06 25.7 22.9 2.5 7.5 0.0 7.5 3 2 4 7 7 7 5 Insecticide toxin TcdB middle/N-terminal region PQQ PF01011.16 gi|386001518|ref|YP_005919817.1| - 0.0098 15.3 4.5 24 4.6 0.0 5.3 5 0 0 5 5 5 0 PQQ enzyme repeat DUF1214 PF06742.6 gi|386001518|ref|YP_005919817.1| - 0.01 16.2 1.8 12 6.4 0.0 4.4 3 2 2 5 5 5 0 Protein of unknown function (DUF1214) Proteasom_Rpn13 PF04683.8 gi|386001518|ref|YP_005919817.1| - 0.016 15.3 0.0 22 5.2 0.0 3.5 3 0 0 3 3 3 0 Proteasome complex subunit Rpn13 ubiquitin receptor WD40 PF00400.27 gi|386001518|ref|YP_005919817.1| - 3.2 7.7 9.1 7.1 6.6 0.0 4.6 5 0 0 5 5 5 0 WD domain, G-beta repeat DUF3693 PF12472.3 gi|386001519|ref|YP_005919818.1| - 0.14 11.7 0.1 0.22 11.1 0.1 1.3 1 0 0 1 1 1 0 Phage related protein PAC2 PF09754.4 gi|386001520|ref|YP_005919819.1| - 4.8e-28 98.5 0.0 5.9e-28 98.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF89 PF01937.14 gi|386001521|ref|YP_005919820.1| - 6e-35 120.6 0.3 1.2e-33 116.4 0.2 2.2 1 1 0 1 1 1 1 Protein of unknown function DUF89 Hist_deacetyl PF00850.14 gi|386001522|ref|YP_005919821.1| - 1.8e-40 139.1 0.6 2.3e-39 135.5 0.4 2.0 1 1 0 1 1 1 1 Histone deacetylase domain PYNP_C PF07831.8 gi|386001523|ref|YP_005919822.1| - 1.9e-16 59.2 0.2 1.1e-15 56.8 0.0 2.3 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.12 gi|386001523|ref|YP_005919822.1| - 1.8e-15 56.2 0.3 6.1e-15 54.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.16 gi|386001523|ref|YP_005919822.1| - 2.7e-11 43.3 0.2 1.1e-10 41.3 0.2 1.9 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Molydop_binding PF01568.16 gi|386001523|ref|YP_005919822.1| - 0.00023 20.9 0.1 0.00046 19.9 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.4 gi|386001523|ref|YP_005919822.1| - 0.00074 18.0 0.0 0.0012 17.4 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) NTP_transf_2 PF01909.18 gi|386001525|ref|YP_005919824.1| - 8.7e-06 25.9 0.0 2.3e-05 24.6 0.0 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain Sua5_yciO_yrdC PF01300.13 gi|386001526|ref|YP_005919825.1| - 1.3e-47 161.3 0.0 1.5e-47 161.1 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination HTH_3 PF01381.17 gi|386001527|ref|YP_005919826.1| - 3.3e-05 23.6 0.3 4.9e-05 23.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|386001527|ref|YP_005919826.1| - 0.00033 20.6 0.1 0.0007 19.5 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|386001527|ref|YP_005919826.1| - 0.0016 18.6 0.0 0.0033 17.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|386001527|ref|YP_005919826.1| - 0.021 14.4 0.1 0.066 12.8 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain AAA PF00004.24 gi|386001528|ref|YP_005919827.1| - 5e-43 146.4 0.0 9.9e-43 145.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|386001528|ref|YP_005919827.1| - 3.5e-06 27.1 0.2 0.00011 22.2 0.1 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|386001528|ref|YP_005919827.1| - 6e-06 26.0 1.4 3.5e-05 23.5 0.1 3.0 3 2 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|386001528|ref|YP_005919827.1| - 1.2e-05 25.3 0.0 2.5e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|386001528|ref|YP_005919827.1| - 3e-05 24.1 0.8 0.0012 18.9 0.1 2.6 2 1 0 2 2 1 1 AAA domain DUF815 PF05673.8 gi|386001528|ref|YP_005919827.1| - 0.00011 21.1 0.0 0.00018 20.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RuvB_N PF05496.7 gi|386001528|ref|YP_005919827.1| - 0.00012 21.2 0.0 0.00025 20.1 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|386001528|ref|YP_005919827.1| - 0.00028 21.6 0.1 0.0026 18.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|386001528|ref|YP_005919827.1| - 0.00074 18.9 3.2 0.0077 15.6 0.1 2.9 2 1 1 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|386001528|ref|YP_005919827.1| - 0.00078 19.1 0.2 0.0023 17.6 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|386001528|ref|YP_005919827.1| - 0.0019 17.6 0.0 0.0038 16.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|386001528|ref|YP_005919827.1| - 0.0036 16.0 0.0 0.0064 15.2 0.0 1.3 1 0 0 1 1 1 1 TIP49 C-terminus Mg_chelatase PF01078.16 gi|386001528|ref|YP_005919827.1| - 0.0042 16.2 0.0 0.011 14.9 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|386001528|ref|YP_005919827.1| - 0.0043 17.0 0.9 0.006 16.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_3 PF07726.6 gi|386001528|ref|YP_005919827.1| - 0.0075 15.8 0.0 0.016 14.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|386001528|ref|YP_005919827.1| - 0.0078 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|386001528|ref|YP_005919827.1| - 0.0078 16.2 0.0 0.026 14.5 0.0 1.9 2 1 0 2 2 1 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|386001528|ref|YP_005919827.1| - 0.0096 16.0 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 RNA helicase Zeta_toxin PF06414.7 gi|386001528|ref|YP_005919827.1| - 0.01 14.9 0.0 0.02 13.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.1 gi|386001528|ref|YP_005919827.1| - 0.011 16.0 0.1 0.037 14.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|386001528|ref|YP_005919827.1| - 0.012 15.4 1.1 0.024 14.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|386001528|ref|YP_005919827.1| - 0.015 14.9 0.5 0.49 10.0 0.0 2.7 2 1 1 3 3 3 0 NACHT domain KaiC PF06745.8 gi|386001528|ref|YP_005919827.1| - 0.032 13.3 0.1 0.088 11.9 0.0 1.7 2 0 0 2 2 2 0 KaiC ABC_tran PF00005.22 gi|386001528|ref|YP_005919827.1| - 0.033 14.4 0.1 0.46 10.7 0.0 2.2 2 0 0 2 2 2 0 ABC transporter NTPase_1 PF03266.10 gi|386001528|ref|YP_005919827.1| - 0.036 13.7 0.1 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.1 gi|386001528|ref|YP_005919827.1| - 0.053 13.0 0.1 0.14 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|386001528|ref|YP_005919827.1| - 0.058 13.0 0.0 1.3 8.7 0.0 2.3 1 1 1 2 2 2 0 Archaeal ATPase PhoH PF02562.11 gi|386001528|ref|YP_005919827.1| - 0.061 12.5 0.1 0.12 11.6 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein Sigma54_activat PF00158.21 gi|386001528|ref|YP_005919827.1| - 0.072 12.5 0.0 0.27 10.6 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|386001528|ref|YP_005919827.1| - 0.073 11.9 0.0 0.16 10.7 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_14 PF13173.1 gi|386001528|ref|YP_005919827.1| - 0.09 12.6 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|386001528|ref|YP_005919827.1| - 0.091 12.3 0.1 0.93 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain CTP-dep_RFKase PF01982.11 gi|386001529|ref|YP_005919828.1| - 1.1e-37 128.3 0.0 1.2e-37 128.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 Antitoxin-MazE PF04014.13 gi|386001529|ref|YP_005919828.1| - 0.0047 16.6 2.3 0.0075 15.9 0.3 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE LysM PF01476.15 gi|386001532|ref|YP_005919831.1| - 1.9e-21 75.6 0.0 0.0068 16.2 0.0 8.6 8 0 0 8 8 8 5 LysM domain DUF2093 PF09866.4 gi|386001532|ref|YP_005919831.1| - 0.022 13.9 0.1 0.051 12.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2093) Phage_tail_X PF05489.7 gi|386001532|ref|YP_005919831.1| - 0.036 13.5 0.1 0.79 9.2 0.0 2.7 2 0 0 2 2 2 0 Phage Tail Protein X 2-Hacid_dh_C PF02826.14 gi|386001533|ref|YP_005919832.1| - 1.2e-64 216.7 0.2 2.6e-64 215.6 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|386001533|ref|YP_005919832.1| - 2.6e-43 146.6 0.8 5.3e-43 145.6 0.5 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|386001533|ref|YP_005919832.1| - 7.7e-07 29.0 0.7 1.9e-06 27.8 0.0 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|386001533|ref|YP_005919832.1| - 1.5e-05 24.8 0.6 0.00031 20.6 0.0 2.4 1 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|386001533|ref|YP_005919832.1| - 0.00064 19.1 0.0 0.0034 16.7 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|386001533|ref|YP_005919832.1| - 0.014 15.5 0.1 0.081 13.0 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DUF556 PF04476.8 gi|386001534|ref|YP_005919833.1| - 2.1e-92 308.6 2.8 2.3e-92 308.4 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) Pterin_bind PF00809.17 gi|386001534|ref|YP_005919833.1| - 0.15 11.4 0.5 2.1 7.6 0.0 2.5 2 1 0 2 2 2 0 Pterin binding enzyme His_biosynth PF00977.16 gi|386001535|ref|YP_005919834.1| - 4.6e-30 104.5 0.0 5.6e-30 104.3 0.0 1.1 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|386001535|ref|YP_005919834.1| - 0.046 12.7 0.0 0.064 12.3 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG FeoB_N PF02421.13 gi|386001536|ref|YP_005919835.1| - 2e-50 170.0 0.1 2.9e-50 169.5 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|386001536|ref|YP_005919835.1| - 3.5e-30 104.1 16.3 4.6e-15 55.4 5.1 2.7 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|386001536|ref|YP_005919835.1| - 2.3e-14 53.3 0.0 4.2e-14 52.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|386001536|ref|YP_005919835.1| - 1.2e-12 47.0 0.4 1.2e-12 47.0 0.3 3.0 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus AIG1 PF04548.11 gi|386001536|ref|YP_005919835.1| - 1.3e-05 24.4 0.0 2.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 AIG1 family SRPRB PF09439.5 gi|386001536|ref|YP_005919835.1| - 0.0029 16.8 0.0 0.0047 16.1 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|386001536|ref|YP_005919835.1| - 0.021 15.2 0.0 0.04 14.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein PduV-EutP PF10662.4 gi|386001536|ref|YP_005919835.1| - 0.079 12.4 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|386001536|ref|YP_005919835.1| - 0.17 11.3 0.1 1.3 8.4 0.0 2.1 1 1 0 2 2 2 0 Elongation factor Tu GTP binding domain RsmJ PF04378.8 gi|386001537|ref|YP_005919836.1| - 1.2e-11 44.1 0.0 1.7e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA small subunit methyltransferase D, RsmJ AcetylCoA_hyd_C PF13336.1 gi|386001538|ref|YP_005919837.1| - 1.5e-59 200.0 0.0 2.2e-59 199.5 0.0 1.3 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|386001538|ref|YP_005919837.1| - 1.1e-46 159.1 0.0 3e-46 157.6 0.0 1.7 2 0 0 2 2 2 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.19 gi|386001538|ref|YP_005919837.1| - 1.2e-11 44.4 0.1 5.9e-11 42.2 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|386001538|ref|YP_005919837.1| - 3.9e-10 40.0 0.0 7.5e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|386001538|ref|YP_005919837.1| - 1.8e-09 37.7 0.0 3.7e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|386001538|ref|YP_005919837.1| - 4e-05 23.6 0.0 0.00012 22.2 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CoA_trans PF01144.18 gi|386001538|ref|YP_005919837.1| - 4.2e-05 22.8 0.0 0.11 11.6 0.0 2.4 2 0 0 2 2 2 2 Coenzyme A transferase Acetyltransf_10 PF13673.1 gi|386001538|ref|YP_005919837.1| - 0.00024 21.1 0.0 0.00075 19.6 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386001538|ref|YP_005919837.1| - 0.00086 19.0 0.0 0.002 17.8 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|386001538|ref|YP_005919837.1| - 0.0015 18.4 0.0 0.0038 17.1 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DeoRC PF00455.17 gi|386001538|ref|YP_005919837.1| - 0.0064 16.1 0.0 0.047 13.3 0.0 2.3 3 0 0 3 3 3 1 DeoR C terminal sensor domain Acetyltransf_CG PF14542.1 gi|386001538|ref|YP_005919837.1| - 0.12 12.2 0.0 0.41 10.5 0.0 1.9 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase IlvC PF01450.14 gi|386001539|ref|YP_005919838.1| - 0.01 15.7 0.1 0.028 14.3 0.1 1.9 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain Peptidase_M32 PF02074.10 gi|386001539|ref|YP_005919838.1| - 0.031 12.9 2.1 0.043 12.4 1.5 1.1 1 0 0 1 1 1 0 Carboxypeptidase Taq (M32) metallopeptidase DUF458 PF04308.7 gi|386001539|ref|YP_005919838.1| - 0.31 10.7 0.1 0.31 10.7 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF458) IMD PF08397.6 gi|386001539|ref|YP_005919838.1| - 0.42 9.8 6.3 1.4 8.2 0.3 2.3 2 0 0 2 2 2 0 IRSp53/MIM homology domain IncA PF04156.9 gi|386001539|ref|YP_005919838.1| - 1.3 8.5 11.6 2 7.9 8.0 1.2 1 0 0 1 1 1 0 IncA protein Glyoxalase_2 PF12681.2 gi|386001540|ref|YP_005919839.1| - 1.3e-19 70.7 0.0 1.5e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|386001540|ref|YP_005919839.1| - 5.1e-11 42.6 0.0 1.3e-10 41.3 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PepSY_2 PF13670.1 gi|386001540|ref|YP_005919839.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.5 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Cdd1 PF11731.3 gi|386001541|ref|YP_005919840.1| - 7.2e-33 112.3 0.0 8.1e-33 112.2 0.0 1.0 1 0 0 1 1 1 1 Pathogenicity locus TfoX_C PF04994.8 gi|386001541|ref|YP_005919840.1| - 0.0035 17.2 0.0 0.0047 16.8 0.0 1.4 1 1 0 1 1 1 1 TfoX C-terminal domain DUF1886 PF09171.5 gi|386001542|ref|YP_005919841.1| - 0.072 12.1 0.0 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1886) DUF2415 PF10313.4 gi|386001542|ref|YP_005919841.1| - 0.079 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein domain (DUF2415) DUF4130 PF13566.1 gi|386001543|ref|YP_005919842.1| - 9.9e-14 51.2 0.0 3.7e-12 46.1 0.0 2.0 2 0 0 2 2 2 2 Domain of unknown function (DUF4130 Radical_SAM PF04055.16 gi|386001544|ref|YP_005919843.1| - 5.9e-11 42.8 0.0 8.9e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.2 gi|386001544|ref|YP_005919843.1| - 7.8e-08 32.1 0.0 2.1e-07 30.7 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|386001544|ref|YP_005919843.1| - 6.4e-07 28.7 0.0 3.7e-06 26.3 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif Fer4_12 PF13353.1 gi|386001544|ref|YP_005919843.1| - 2.3e-06 27.7 0.0 3.8e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain HHH_5 PF14520.1 gi|386001544|ref|YP_005919843.1| - 0.00015 21.8 0.0 0.0039 17.3 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|386001544|ref|YP_005919843.1| - 0.13 12.1 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif ShK PF01549.19 gi|386001544|ref|YP_005919843.1| - 0.47 10.8 4.1 0.21 11.9 0.6 2.0 3 0 0 3 3 3 0 ShK domain-like P_proprotein PF01483.15 gi|386001545|ref|YP_005919844.1| - 7.5e-34 115.3 0.0 1.5e-16 59.9 0.0 2.4 2 0 0 2 2 2 2 Proprotein convertase P-domain Peptidase_S8 PF00082.17 gi|386001545|ref|YP_005919844.1| - 3e-32 111.9 0.0 4.5e-32 111.3 0.0 1.3 1 0 0 1 1 1 1 Subtilase family AcetylCoA_hyd_C PF13336.1 gi|386001546|ref|YP_005919845.1| - 4e-53 179.2 0.0 6e-53 178.6 0.0 1.3 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|386001546|ref|YP_005919845.1| - 2.4e-31 109.0 0.0 4.4e-31 108.1 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.19 gi|386001546|ref|YP_005919845.1| - 2.8e-12 46.4 0.2 6.2e-12 45.3 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|386001546|ref|YP_005919845.1| - 2.7e-07 30.6 0.0 4.8e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|386001546|ref|YP_005919845.1| - 3.3e-07 30.5 0.0 5.4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386001546|ref|YP_005919845.1| - 0.00026 20.6 0.0 0.0006 19.5 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|386001546|ref|YP_005919845.1| - 0.00044 20.3 0.1 0.0018 18.3 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain CoA_trans PF01144.18 gi|386001546|ref|YP_005919845.1| - 0.00068 18.8 0.0 0.75 8.9 0.0 2.4 2 0 0 2 2 2 2 Coenzyme A transferase Hist_deacetyl PF00850.14 gi|386001547|ref|YP_005919846.1| - 2.1e-79 267.0 0.0 3.1e-79 266.4 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain Spo0M PF07070.6 gi|386001548|ref|YP_005919847.1| - 0.072 12.4 0.0 0.22 10.8 0.0 1.6 2 0 0 2 2 2 0 SpoOM protein tRNA_anti-codon PF01336.20 gi|386001549|ref|YP_005919848.1| - 0.0058 16.4 0.0 0.0074 16.1 0.0 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain FpoO PF10621.4 gi|386001550|ref|YP_005919849.1| - 7.3e-14 51.8 0.2 7.5e-14 51.8 0.1 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO SAM_adeno_trans PF01887.11 gi|386001551|ref|YP_005919850.1| - 3.7e-75 252.3 0.0 4.2e-75 252.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Bac_luciferase PF00296.15 gi|386001552|ref|YP_005919851.1| - 1.3e-62 211.7 3.3 1.5e-62 211.4 2.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PHP PF02811.14 gi|386001552|ref|YP_005919851.1| - 0.079 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 PHP domain CTP_transf_2 PF01467.21 gi|386001553|ref|YP_005919852.1| - 7.1e-16 58.6 0.0 9.3e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|386001553|ref|YP_005919852.1| - 0.0072 15.9 0.1 0.013 15.1 0.1 1.3 1 0 0 1 1 1 1 FAD synthetase TPR_1 PF00515.23 gi|386001554|ref|YP_005919853.1| - 4.6e-121 390.0 31.6 3e-11 42.4 0.2 11.1 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386001554|ref|YP_005919853.1| - 2.2e-100 328.3 41.4 5.9e-18 64.2 0.1 6.6 3 2 3 7 7 7 7 TPR repeat TPR_2 PF07719.12 gi|386001554|ref|YP_005919853.1| - 1.6e-95 305.5 39.0 5.8e-09 35.1 0.1 11.2 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001554|ref|YP_005919853.1| - 4.3e-79 254.2 33.5 2.1e-07 30.5 0.0 11.8 12 0 0 12 12 11 11 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001554|ref|YP_005919853.1| - 1.4e-74 246.0 32.0 3.8e-13 49.1 0.6 6.7 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386001554|ref|YP_005919853.1| - 2.4e-73 236.5 22.0 2.2e-06 27.0 0.0 11.1 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001554|ref|YP_005919853.1| - 1.3e-59 197.7 38.9 1.1e-11 45.0 0.1 7.5 3 2 4 8 8 8 8 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001554|ref|YP_005919853.1| - 1.3e-49 162.0 24.4 2.9e-05 23.5 0.1 11.1 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001554|ref|YP_005919853.1| - 7.1e-49 159.8 35.7 5.5e-05 23.4 0.0 11.2 1 1 10 11 11 11 11 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386001554|ref|YP_005919853.1| - 3.5e-37 126.0 26.5 2e-08 33.9 0.6 7.3 1 1 7 9 9 9 9 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001554|ref|YP_005919853.1| - 1.2e-31 108.8 25.2 2.1e-07 31.1 0.9 6.8 4 2 2 7 7 7 7 Tetratricopeptide repeat TPR_10 PF13374.1 gi|386001554|ref|YP_005919853.1| - 3.9e-29 99.7 47.3 0.0005 19.9 0.1 11.2 11 0 0 11 11 11 10 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386001554|ref|YP_005919853.1| - 1.3e-27 94.3 16.7 0.025 15.0 0.1 11.2 10 1 1 11 11 11 5 Tetratricopeptide repeat DUF3856 PF12968.2 gi|386001554|ref|YP_005919853.1| - 1.8e-22 79.7 6.7 0.067 13.0 0.0 9.7 4 3 6 10 10 10 6 Domain of Unknown Function (DUF3856) TPR_4 PF07721.9 gi|386001554|ref|YP_005919853.1| - 1.3e-19 68.4 24.5 0.27 11.7 0.2 10.6 10 0 0 10 10 10 4 Tetratricopeptide repeat BTAD PF03704.12 gi|386001554|ref|YP_005919853.1| - 2.7e-18 66.6 19.2 0.00043 20.6 0.1 5.9 4 1 1 6 6 6 5 Bacterial transcriptional activator domain Apc3 PF12895.2 gi|386001554|ref|YP_005919853.1| - 2.4e-14 53.2 11.5 4.8e-05 23.4 0.1 5.0 3 1 3 6 6 6 5 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.13 gi|386001554|ref|YP_005919853.1| - 6.5e-14 51.5 32.1 0.32 10.8 0.2 10.8 11 0 0 11 11 11 4 MIT (microtubule interacting and transport) domain TPR_5 PF12688.2 gi|386001554|ref|YP_005919853.1| - 4.7e-10 39.5 17.0 0.6 10.1 0.2 7.8 3 3 2 7 7 7 3 Tetratrico peptide repeat TPR_15 PF13429.1 gi|386001554|ref|YP_005919853.1| - 1.9e-09 36.9 13.8 0.018 14.0 0.0 5.3 1 1 3 5 5 5 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|386001554|ref|YP_005919853.1| - 3.3e-09 36.0 0.3 0.19 10.4 0.0 5.6 1 1 5 6 6 6 1 NMDA receptor-regulated protein 1 FAT PF02259.18 gi|386001554|ref|YP_005919853.1| - 4.7e-09 35.6 0.9 0.41 9.5 0.2 6.0 1 1 5 6 6 6 1 FAT domain Fis1_TPR_C PF14853.1 gi|386001554|ref|YP_005919853.1| - 1.3e-08 34.5 24.0 0.77 9.6 0.0 10.0 9 2 2 11 11 11 1 Fis1 C-terminal tetratricopeptide repeat Coatomer_E PF04733.9 gi|386001554|ref|YP_005919853.1| - 9.3e-08 31.6 0.3 0.38 9.9 0.0 4.1 1 1 2 4 4 4 3 Coatomer epsilon subunit DUF1293 PF06950.6 gi|386001554|ref|YP_005919853.1| - 1.3e-05 25.0 0.3 26 4.7 0.0 6.5 2 2 6 8 8 7 0 Protein of unknown function (DUF1293) RPN7 PF10602.4 gi|386001554|ref|YP_005919853.1| - 0.00036 19.9 5.1 6.7 6.0 0.1 6.1 2 2 5 7 7 7 0 26S proteasome subunit RPN7 PvlArgDC PF01862.11 gi|386001554|ref|YP_005919853.1| - 0.00048 19.7 5.4 18 4.9 0.0 7.0 8 0 0 8 8 8 0 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) EST1_DNA_bind PF10373.4 gi|386001554|ref|YP_005919853.1| - 0.0009 18.5 4.8 1.1 8.4 0.0 3.9 3 1 1 4 4 4 1 Est1 DNA/RNA binding domain TPR_20 PF14561.1 gi|386001554|ref|YP_005919853.1| - 0.00092 19.2 4.6 11 6.1 0.0 5.2 3 2 1 5 5 5 0 Tetratricopeptide repeat DUF3775 PF12616.3 gi|386001554|ref|YP_005919853.1| - 0.0028 17.3 12.9 40 4.0 0.0 8.0 8 2 1 9 9 9 0 Protein of unknown function (DUF3775) PPR PF01535.15 gi|386001554|ref|YP_005919853.1| - 0.0093 15.8 6.9 63 3.8 0.0 7.3 8 0 0 8 8 7 0 PPR repeat APP_E2 PF12925.2 gi|386001554|ref|YP_005919853.1| - 0.029 13.9 0.0 7.5 6.0 0.0 3.7 4 2 1 5 5 4 0 E2 domain of amyloid precursor protein TraD PF06412.6 gi|386001554|ref|YP_005919853.1| - 0.034 13.7 0.4 47 3.6 0.0 5.2 6 0 0 6 6 6 0 Conjugal transfer protein TraD TPR_21 PF09976.4 gi|386001554|ref|YP_005919853.1| - 4.4 7.2 16.8 67 3.3 1.1 6.4 5 3 0 5 5 5 0 Tetratricopeptide repeat CTP_transf_2 PF01467.21 gi|386001555|ref|YP_005919854.1| - 4.3e-17 62.6 0.1 6.6e-16 58.7 0.1 1.9 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|386001555|ref|YP_005919854.1| - 0.00023 20.8 0.0 0.00037 20.1 0.0 1.5 1 0 0 1 1 1 1 FAD synthetase PTS_IIB PF02302.12 gi|386001555|ref|YP_005919854.1| - 0.03 14.8 0.0 0.056 13.9 0.0 1.4 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit CTP_transf_2 PF01467.21 gi|386001556|ref|YP_005919855.1| - 5.8e-18 65.4 0.0 8.6e-18 64.8 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase Prok-JAB PF14464.1 gi|386001557|ref|YP_005919856.1| - 4.2e-08 32.7 0.0 5.7e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|386001557|ref|YP_005919856.1| - 0.062 13.0 0.0 0.094 12.4 0.0 1.4 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|386001557|ref|YP_005919856.1| - 0.093 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain BPL_LplA_LipB PF03099.14 gi|386001558|ref|YP_005919857.1| - 1.7e-26 92.6 0.0 1e-25 90.1 0.0 2.0 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|386001558|ref|YP_005919857.1| - 3.8e-12 45.6 0.2 1.2e-11 44.1 0.1 1.8 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|386001558|ref|YP_005919857.1| - 5e-10 38.9 0.2 1.1e-09 37.7 0.1 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|386001558|ref|YP_005919857.1| - 0.00054 19.2 1.0 0.0018 17.6 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|386001558|ref|YP_005919857.1| - 0.0096 15.3 3.4 0.057 12.8 0.0 3.0 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|386001558|ref|YP_005919857.1| - 0.018 14.6 0.8 0.2 11.3 0.0 2.6 2 0 0 2 2 2 0 MarR family HTH_AsnC-type PF13404.1 gi|386001558|ref|YP_005919857.1| - 0.018 14.5 0.1 0.12 11.9 0.1 2.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|386001558|ref|YP_005919857.1| - 0.056 13.4 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|386001558|ref|YP_005919857.1| - 0.15 12.1 2.8 0.15 12.0 0.4 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain CPSase_L_D2 PF02786.12 gi|386001559|ref|YP_005919858.1| - 1.1e-74 250.2 0.0 2.2e-74 249.2 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|386001559|ref|YP_005919858.1| - 4.1e-46 155.6 0.1 1.9e-45 153.4 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|386001559|ref|YP_005919858.1| - 1.2e-40 137.8 0.0 2.4e-40 136.8 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATPgrasp_Ter PF15632.1 gi|386001559|ref|YP_005919858.1| - 1.5e-14 53.5 0.0 9e-14 50.9 0.0 2.1 2 1 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|386001559|ref|YP_005919858.1| - 1.3e-13 51.0 0.0 3.2e-13 49.8 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|386001559|ref|YP_005919858.1| - 5e-12 45.6 0.0 1.3e-11 44.2 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|386001559|ref|YP_005919858.1| - 1.9e-07 30.7 0.0 0.0028 17.1 0.0 2.5 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|386001559|ref|YP_005919858.1| - 3e-07 30.4 0.0 5.6e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|386001559|ref|YP_005919858.1| - 8.1e-05 22.0 0.0 0.00017 20.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain OAD_gamma PF04277.8 gi|386001559|ref|YP_005919858.1| - 0.003 17.9 0.3 0.0059 16.9 0.2 1.5 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain ATP-grasp_5 PF13549.1 gi|386001559|ref|YP_005919858.1| - 0.015 14.5 0.1 0.082 12.1 0.0 2.0 2 0 0 2 2 2 0 ATP-grasp domain Aldo_ket_red PF00248.16 gi|386001559|ref|YP_005919858.1| - 0.085 11.6 0.0 0.15 10.8 0.0 1.3 1 0 0 1 1 1 0 Aldo/keto reductase family DUF4019 PF13211.1 gi|386001559|ref|YP_005919858.1| - 0.092 13.0 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) Pyridox_ox_2 PF12900.2 gi|386001560|ref|YP_005919859.1| - 3.2e-24 85.3 0.0 3.6e-24 85.2 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|386001560|ref|YP_005919859.1| - 8.1e-12 45.0 0.0 1e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase AAA PF00004.24 gi|386001561|ref|YP_005919860.1| - 1e-11 45.1 0.0 2e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|386001561|ref|YP_005919860.1| - 4.3e-09 35.5 0.0 0.00053 18.7 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|386001561|ref|YP_005919860.1| - 1.5e-07 31.5 0.0 7.8e-05 22.8 0.0 2.9 2 1 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|386001561|ref|YP_005919860.1| - 1.6e-06 27.3 0.0 6.1e-06 25.4 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|386001561|ref|YP_005919860.1| - 3.8e-05 23.1 0.0 6.8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|386001561|ref|YP_005919860.1| - 4.4e-05 22.9 3.1 0.02 14.3 0.0 3.3 2 2 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|386001561|ref|YP_005919860.1| - 4.9e-05 23.3 0.1 0.016 15.1 0.0 3.2 2 1 1 3 3 3 1 AAA ATPase domain AAA_17 PF13207.1 gi|386001561|ref|YP_005919860.1| - 0.00015 22.5 0.0 0.00071 20.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|386001561|ref|YP_005919860.1| - 0.00024 21.0 0.0 0.00048 20.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|386001561|ref|YP_005919860.1| - 0.00076 19.1 4.6 0.019 14.5 3.1 2.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|386001561|ref|YP_005919860.1| - 0.004 17.1 0.6 0.49 10.3 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_5 PF07728.9 gi|386001561|ref|YP_005919860.1| - 0.0046 16.6 0.1 0.077 12.7 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|386001561|ref|YP_005919860.1| - 0.017 14.7 0.0 0.033 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|386001561|ref|YP_005919860.1| - 0.019 15.2 0.0 0.058 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain IPT PF01745.11 gi|386001561|ref|YP_005919860.1| - 0.027 13.6 0.0 0.05 12.7 0.0 1.4 1 1 0 1 1 1 0 Isopentenyl transferase PhoH PF02562.11 gi|386001561|ref|YP_005919860.1| - 0.036 13.3 0.4 0.58 9.3 0.1 2.4 1 1 1 2 2 2 0 PhoH-like protein TIP49 PF06068.8 gi|386001561|ref|YP_005919860.1| - 0.043 12.5 0.0 0.081 11.6 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Arch_ATPase PF01637.13 gi|386001561|ref|YP_005919860.1| - 0.046 13.4 0.0 0.18 11.4 0.0 2.0 1 1 0 1 1 1 0 Archaeal ATPase DEAD PF00270.24 gi|386001561|ref|YP_005919860.1| - 0.049 13.1 0.0 15 5.0 0.0 2.7 3 0 0 3 3 3 0 DEAD/DEAH box helicase Zeta_toxin PF06414.7 gi|386001561|ref|YP_005919860.1| - 0.059 12.4 0.3 0.13 11.3 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin RNA_helicase PF00910.17 gi|386001561|ref|YP_005919860.1| - 0.062 13.4 0.0 0.14 12.3 0.0 1.6 1 1 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|386001561|ref|YP_005919860.1| - 0.11 12.7 0.0 0.88 9.8 0.0 2.2 1 1 1 2 2 2 0 ABC transporter Sigma54_activ_2 PF14532.1 gi|386001561|ref|YP_005919860.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|386001561|ref|YP_005919860.1| - 0.13 11.6 0.5 2.2 7.6 0.1 2.7 3 0 0 3 3 3 0 AAA-like domain BNR PF02012.15 gi|386001562|ref|YP_005919861.1| - 2.9e-08 32.3 16.7 0.8 9.7 0.1 6.0 5 0 0 5 5 5 5 BNR/Asp-box repeat PSII_BNR PF14870.1 gi|386001562|ref|YP_005919861.1| - 0.00022 20.3 4.8 0.41 9.5 0.7 4.4 1 1 2 3 3 3 2 Photosynthesis system II assembly factor YCF48 ACP_syn_III_C PF08541.5 gi|386001562|ref|YP_005919861.1| - 0.029 14.3 0.1 0.26 11.2 0.0 2.5 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Mo-co_dimer PF03404.11 gi|386001562|ref|YP_005919861.1| - 1.4 8.5 4.8 22 4.7 0.1 3.7 5 0 0 5 5 5 0 Mo-co oxidoreductase dimerisation domain CAP PF00188.21 gi|386001563|ref|YP_005919862.1| - 0.00041 20.8 1.5 0.0013 19.2 1.0 1.8 1 1 0 1 1 1 1 Cysteine-rich secretory protein family AdoMet_Synthase PF01941.14 gi|386001564|ref|YP_005919863.1| - 1.7e-173 576.7 4.7 1.9e-173 576.5 3.2 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) ArsA_ATPase PF02374.10 gi|386001565|ref|YP_005919864.1| - 2.6e-65 220.4 0.0 3e-65 220.2 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|386001565|ref|YP_005919864.1| - 6.1e-12 45.3 0.0 1.4e-11 44.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|386001565|ref|YP_005919864.1| - 0.0039 16.4 0.1 0.022 13.9 0.0 2.0 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.4 gi|386001565|ref|YP_005919864.1| - 0.0079 16.0 0.1 0.015 15.1 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_10 PF12846.2 gi|386001565|ref|YP_005919864.1| - 0.076 12.4 0.0 0.33 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_31 PF13614.1 gi|386001565|ref|YP_005919864.1| - 0.093 12.6 0.1 0.47 10.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain PEGA PF08308.6 gi|386001567|ref|YP_005919866.1| - 1.4e-09 37.6 0.0 2.9e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 PEGA domain Y_Y_Y PF07495.8 gi|386001568|ref|YP_005919867.1| - 0.018 14.7 2.4 0.3 10.8 0.0 3.7 4 0 0 4 4 4 0 Y_Y_Y domain HisG PF01634.13 gi|386001569|ref|YP_005919868.1| - 2.8e-40 137.5 0.0 4.1e-40 137.0 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|386001569|ref|YP_005919868.1| - 5e-23 80.8 0.2 3.8e-22 78.0 0.0 2.3 2 0 0 2 2 2 1 HisG, C-terminal domain Nitroreductase PF00881.19 gi|386001570|ref|YP_005919869.1| - 6.7e-32 110.5 0.0 8.1e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Radical_SAM PF04055.16 gi|386001571|ref|YP_005919870.1| - 7.3e-18 65.2 0.0 1.3e-17 64.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_10 PF13673.1 gi|386001571|ref|YP_005919870.1| - 4.3e-07 30.0 0.1 2.1e-06 27.8 0.1 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|386001571|ref|YP_005919870.1| - 2e-06 27.7 0.3 7.3e-06 25.9 0.2 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family DUF2627 PF11118.3 gi|386001572|ref|YP_005919871.1| - 0.45 10.6 3.4 2.6 8.1 0.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2627) Cpn60_TCP1 PF00118.19 gi|386001573|ref|YP_005919872.1| - 3.4e-156 520.6 12.2 3.9e-156 520.4 8.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family CHAT PF12770.2 gi|386001575|ref|YP_005919874.1| - 2.4e-12 46.5 0.1 6.5e-12 45.1 0.1 1.7 1 0 0 1 1 1 1 CHAT domain TPR_12 PF13424.1 gi|386001575|ref|YP_005919874.1| - 2.1e-07 30.7 15.9 0.0048 16.8 0.2 6.2 3 2 3 6 6 6 3 Tetratricopeptide repeat NB-ARC PF00931.17 gi|386001575|ref|YP_005919874.1| - 8.6e-06 24.8 0.0 1.9e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain TPR_10 PF13374.1 gi|386001575|ref|YP_005919874.1| - 4.7e-05 23.1 14.8 1.4 8.9 0.2 7.5 8 0 0 8 8 6 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|386001575|ref|YP_005919874.1| - 5.8e-05 23.1 0.0 0.79 9.8 0.0 4.3 3 1 1 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 AAA_22 PF13401.1 gi|386001575|ref|YP_005919874.1| - 9.1e-05 22.6 0.0 0.00047 20.3 0.0 2.2 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|386001575|ref|YP_005919874.1| - 0.0016 18.4 0.2 0.015 15.2 0.1 2.7 1 1 0 1 1 1 1 AAA ATPase domain TPR_11 PF13414.1 gi|386001575|ref|YP_005919874.1| - 0.0018 17.8 0.9 0.95 9.1 0.0 3.9 3 0 0 3 3 3 1 TPR repeat PPR_3 PF13812.1 gi|386001575|ref|YP_005919874.1| - 0.003 17.7 0.1 97 3.6 0.2 5.8 5 0 0 5 5 5 0 Pentatricopeptide repeat domain TPR_19 PF14559.1 gi|386001575|ref|YP_005919874.1| - 0.0043 17.3 10.6 0.11 12.8 0.7 4.5 3 1 2 5 5 4 3 Tetratricopeptide repeat TPR_4 PF07721.9 gi|386001575|ref|YP_005919874.1| - 0.02 15.2 2.3 0.02 15.2 1.6 7.0 8 0 0 8 8 5 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001575|ref|YP_005919874.1| - 0.022 15.3 0.2 0.022 15.3 0.1 6.2 7 0 0 7 7 4 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001575|ref|YP_005919874.1| - 0.031 14.0 8.6 20 5.3 0.1 5.9 6 0 0 6 6 5 0 Tetratricopeptide repeat PhoH PF02562.11 gi|386001575|ref|YP_005919874.1| - 0.052 12.7 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA PF00004.24 gi|386001575|ref|YP_005919874.1| - 0.074 13.2 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SNAP PF14938.1 gi|386001575|ref|YP_005919874.1| - 0.082 12.0 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Soluble NSF attachment protein, SNAP DUF2075 PF09848.4 gi|386001575|ref|YP_005919874.1| - 0.3 10.0 0.0 0.47 9.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TPR_2 PF07719.12 gi|386001575|ref|YP_005919874.1| - 0.55 10.2 10.4 3.9 7.6 0.0 5.2 7 0 0 7 7 5 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386001575|ref|YP_005919874.1| - 1.3 9.6 4.6 67 4.2 0.2 3.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001575|ref|YP_005919874.1| - 5.4 7.8 19.5 0.55 10.9 0.1 6.2 6 0 0 6 6 6 0 Tetratricopeptide repeat MacB_PCD PF12704.2 gi|386001577|ref|YP_005919876.1| - 7.5e-37 127.1 2.0 8.4e-37 126.9 0.0 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|386001577|ref|YP_005919876.1| - 1.5e-20 73.1 13.7 1.8e-20 72.9 6.9 2.2 2 0 0 2 2 2 1 FtsX-like permease family ABC_tran PF00005.22 gi|386001579|ref|YP_005919878.1| - 8.7e-31 107.0 0.0 1.2e-30 106.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001579|ref|YP_005919878.1| - 1.7e-15 57.8 0.0 2.8e-10 40.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|386001579|ref|YP_005919878.1| - 1.4e-07 30.9 0.0 0.00013 21.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|386001579|ref|YP_005919878.1| - 0.00012 21.9 0.2 0.0017 18.2 0.1 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|386001579|ref|YP_005919878.1| - 0.0013 17.9 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|386001579|ref|YP_005919878.1| - 0.0024 17.3 0.0 0.0041 16.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|386001579|ref|YP_005919878.1| - 0.0042 17.2 0.0 0.096 12.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|386001579|ref|YP_005919878.1| - 0.0076 16.2 0.1 0.018 15.0 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|386001579|ref|YP_005919878.1| - 0.013 15.3 0.0 0.1 12.4 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|386001579|ref|YP_005919878.1| - 0.015 14.7 0.0 0.077 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|386001579|ref|YP_005919878.1| - 0.022 14.1 0.1 0.033 13.6 0.1 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|386001579|ref|YP_005919878.1| - 0.023 15.4 0.4 0.046 14.5 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|386001579|ref|YP_005919878.1| - 0.03 14.6 1.3 1.5 9.1 0.9 2.5 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|386001579|ref|YP_005919878.1| - 0.035 14.2 0.0 0.07 13.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.10 gi|386001579|ref|YP_005919878.1| - 0.053 13.2 0.0 5.6 6.6 0.0 2.4 2 1 0 2 2 2 0 NTPase Rad17 PF03215.10 gi|386001579|ref|YP_005919878.1| - 0.059 12.0 0.0 0.088 11.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_15 PF13175.1 gi|386001579|ref|YP_005919878.1| - 0.067 12.2 0.0 0.96 8.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain HAD PF12710.2 gi|386001579|ref|YP_005919878.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Clr5 PF14420.1 gi|386001580|ref|YP_005919879.1| - 0.13 12.2 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Clr5 domain YARHG PF13308.1 gi|386001582|ref|YP_005919881.1| - 0.032 13.7 0.1 3.3 7.3 0.0 3.0 3 0 0 3 3 3 0 YARHG domain bZIP_Maf PF03131.12 gi|386001582|ref|YP_005919881.1| - 3.8 7.8 9.5 9.2 6.6 1.1 3.3 3 1 0 3 3 3 0 bZIP Maf transcription factor Phage_P2_GpE PF06528.7 gi|386001582|ref|YP_005919881.1| - 4 6.9 27.5 12 5.3 0.3 6.7 6 1 1 7 7 7 0 Phage P2 GpE Metal_resist PF13801.1 gi|386001582|ref|YP_005919881.1| - 8.5 6.3 8.2 1.9 8.4 0.0 3.2 3 0 0 3 3 3 0 Heavy-metal resistance GnsAB PF08178.6 gi|386001582|ref|YP_005919881.1| - 9.7 5.9 10.5 1.6 8.4 0.5 2.4 2 0 0 2 2 2 0 GnsA/GnsB family Cation_efflux PF01545.16 gi|386001583|ref|YP_005919882.1| - 1.5e-63 214.5 1.6 1.7e-63 214.3 1.1 1.0 1 0 0 1 1 1 1 Cation efflux family DUF418 PF04235.7 gi|386001583|ref|YP_005919882.1| - 0.16 11.6 3.9 0.56 9.8 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF418) Herpes_US9 PF06072.6 gi|386001583|ref|YP_005919882.1| - 2.2 8.1 5.1 17 5.2 0.1 3.0 3 0 0 3 3 3 0 Alphaherpesvirus tegument protein US9 DUF389 PF04087.9 gi|386001584|ref|YP_005919883.1| - 3.5e-34 117.7 15.2 3.5e-34 117.7 10.6 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF389) CorA PF01544.13 gi|386001585|ref|YP_005919884.1| - 3e-86 289.0 0.3 3.7e-86 288.7 0.2 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein T2SF PF00482.18 gi|386001585|ref|YP_005919884.1| - 2 8.3 4.9 0.35 10.7 0.2 2.1 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein F MS_channel PF00924.13 gi|386001586|ref|YP_005919885.1| - 2.3e-30 105.4 4.9 2.3e-30 105.4 3.4 1.9 2 1 0 2 2 2 1 Mechanosensitive ion channel MatE PF01554.13 gi|386001586|ref|YP_005919885.1| - 0.095 12.3 4.4 0.15 11.6 3.0 1.3 1 0 0 1 1 1 0 MatE Na_Ca_ex PF01699.19 gi|386001587|ref|YP_005919886.1| - 1.9e-49 166.8 34.6 1e-25 89.9 7.7 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF3593 PF12159.3 gi|386001587|ref|YP_005919886.1| - 0.016 14.9 0.9 0.52 10.1 0.1 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF3593) ABC2_membrane PF01061.19 gi|386001588|ref|YP_005919887.1| - 3.8e-40 137.2 21.5 4.9e-40 136.9 14.9 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|386001588|ref|YP_005919887.1| - 1.3e-16 60.5 24.1 1.3e-16 60.5 16.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|386001588|ref|YP_005919887.1| - 3.5e-10 39.2 14.6 3.5e-10 39.2 10.1 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|386001588|ref|YP_005919887.1| - 2e-07 30.4 20.5 2.8e-07 29.9 14.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein PAGK PF15284.1 gi|386001588|ref|YP_005919887.1| - 0.25 11.0 1.5 0.58 9.9 0.6 1.9 1 1 0 1 1 1 0 Phage-encoded virulence factor ABC_tran PF00005.22 gi|386001589|ref|YP_005919888.1| - 2.2e-33 115.4 0.0 3.5e-33 114.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001589|ref|YP_005919888.1| - 5.9e-16 59.2 0.0 2.3e-09 37.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|386001589|ref|YP_005919888.1| - 2.8e-06 27.7 0.0 3.8e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|386001589|ref|YP_005919888.1| - 9.4e-06 24.9 0.0 0.024 13.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF4162 PF13732.1 gi|386001589|ref|YP_005919888.1| - 1.9e-05 25.0 0.0 3.2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|386001589|ref|YP_005919888.1| - 6.7e-05 22.3 0.0 0.00013 21.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|386001589|ref|YP_005919888.1| - 0.00098 18.4 0.0 0.0044 16.2 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|386001589|ref|YP_005919888.1| - 0.0043 17.2 0.1 0.067 13.3 0.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|386001589|ref|YP_005919888.1| - 0.0057 16.1 0.0 1.8 7.9 0.0 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|386001589|ref|YP_005919888.1| - 0.01 15.8 0.1 0.057 13.3 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|386001589|ref|YP_005919888.1| - 0.07 12.5 0.3 0.95 8.8 0.1 2.6 2 1 0 2 2 2 0 AAA domain iPGM_N PF06415.8 gi|386001589|ref|YP_005919888.1| - 0.082 12.2 0.1 0.14 11.4 0.1 1.3 1 0 0 1 1 1 0 BPG-independent PGAM N-terminus (iPGM_N) MutS_V PF00488.16 gi|386001589|ref|YP_005919888.1| - 0.085 12.2 0.0 2 7.7 0.0 2.1 2 0 0 2 2 2 0 MutS domain V DUF258 PF03193.11 gi|386001589|ref|YP_005919888.1| - 0.085 12.0 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|386001589|ref|YP_005919888.1| - 0.18 10.4 0.0 0.24 10.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Radical_SAM PF04055.16 gi|386001590|ref|YP_005919889.1| - 1.5e-12 47.9 1.1 5.9e-12 46.0 0.8 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|386001591|ref|YP_005919890.1| - 8.3e-17 61.8 0.0 4.1e-15 56.3 0.0 3.4 3 2 1 4 4 4 1 Radical SAM superfamily B12-binding PF02310.14 gi|386001591|ref|YP_005919890.1| - 1.3e-13 50.9 0.0 3.6e-13 49.4 0.0 1.7 2 0 0 2 2 2 1 B12 binding domain AP_endonuc_2 PF01261.19 gi|386001591|ref|YP_005919890.1| - 0.031 13.5 0.0 6.1 6.0 0.0 2.7 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF1837 PF08878.6 gi|386001591|ref|YP_005919890.1| - 0.16 11.5 0.0 0.36 10.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1837) Glucokinase PF02685.11 gi|386001592|ref|YP_005919891.1| - 5.1e-75 252.1 0.0 5.9e-75 251.9 0.0 1.0 1 0 0 1 1 1 1 Glucokinase HEAT_2 PF13646.1 gi|386001593|ref|YP_005919892.1| - 1.3e-134 438.8 59.5 2.5e-19 69.3 0.4 10.0 1 1 8 10 10 10 10 HEAT repeats HEAT_PBS PF03130.11 gi|386001593|ref|YP_005919892.1| - 1.4e-88 282.4 79.1 1.1e-07 31.6 0.0 19.7 19 1 1 20 20 20 17 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|386001593|ref|YP_005919892.1| - 6.4e-80 256.1 14.0 0.0002 21.1 0.0 19.0 19 0 0 19 19 19 16 HEAT repeat HEAT_EZ PF13513.1 gi|386001593|ref|YP_005919892.1| - 1.5e-45 152.6 76.7 0.00024 21.5 0.0 17.3 9 6 8 17 17 17 16 HEAT-like repeat Arm PF00514.18 gi|386001593|ref|YP_005919892.1| - 3.1e-31 106.1 13.6 0.018 14.8 0.0 13.7 11 3 4 15 15 15 9 Armadillo/beta-catenin-like repeat Cnd1 PF12717.2 gi|386001593|ref|YP_005919892.1| - 4.3e-11 42.9 0.0 11 5.7 0.0 10.6 7 4 4 12 12 12 0 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|386001593|ref|YP_005919892.1| - 2.1e-09 36.2 0.0 1.4 7.1 0.0 6.8 2 2 4 8 8 8 4 Adaptin N terminal region Vac14_Fab1_bd PF12755.2 gi|386001593|ref|YP_005919892.1| - 8.2e-09 35.7 0.0 17 5.8 0.1 11.1 10 5 2 13 13 12 0 Vacuolar 14 Fab1-binding region Aconitase_B_N PF11791.3 gi|386001593|ref|YP_005919892.1| - 1.4e-06 28.1 10.2 7.4 6.3 0.0 10.1 9 3 2 12 12 12 1 Aconitate B N-terminal domain Cohesin_HEAT PF12765.2 gi|386001593|ref|YP_005919892.1| - 7e-05 22.6 13.6 0.45 10.5 0.0 8.3 11 0 0 11 11 11 2 HEAT repeat associated with sister chromatid cohesion Gag_p12 PF01141.13 gi|386001593|ref|YP_005919892.1| - 0.00037 20.5 4.2 0.15 12.2 0.0 3.7 3 1 0 4 4 3 2 Gag polyprotein, inner coat protein p12 Glycos_transf_N PF04413.11 gi|386001593|ref|YP_005919892.1| - 0.0047 16.1 0.4 89 2.1 0.0 6.8 9 1 0 9 9 9 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CLASP_N PF12348.3 gi|386001593|ref|YP_005919892.1| - 0.024 14.0 0.3 9.7 5.4 0.0 5.1 6 0 0 6 6 6 0 CLASP N terminal DUF4042 PF13251.1 gi|386001593|ref|YP_005919892.1| - 0.04 13.3 0.6 25 4.2 0.0 4.9 6 1 1 7 7 7 0 Domain of unknown function (DUF4042) AAA_4 PF04326.9 gi|386001594|ref|YP_005919893.1| - 4.5e-13 49.4 0.0 6.4e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 Divergent AAA domain DUF2582 PF10771.4 gi|386001596|ref|YP_005919895.1| - 1.1e-19 70.0 0.1 1.1e-19 70.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) HTH_9 PF08221.6 gi|386001596|ref|YP_005919895.1| - 7.3e-05 22.5 0.0 8.2e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.14 gi|386001596|ref|YP_005919895.1| - 0.0018 17.9 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GNT-I PF03071.10 gi|386001596|ref|YP_005919895.1| - 0.12 10.9 0.0 0.12 10.8 0.0 1.0 1 0 0 1 1 1 0 GNT-I family TFIIE_alpha PF02002.12 gi|386001596|ref|YP_005919895.1| - 0.12 11.8 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit adh_short PF00106.20 gi|386001597|ref|YP_005919896.1| - 1.7e-32 112.6 0.0 2.3e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|386001597|ref|YP_005919896.1| - 1.4e-28 100.3 0.0 1.7e-28 99.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|386001597|ref|YP_005919896.1| - 5.6e-15 55.4 0.0 8.3e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 KR domain MS_channel PF00924.13 gi|386001599|ref|YP_005919898.1| - 9.1e-37 126.3 0.0 9.1e-37 126.3 0.0 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel YbhQ PF11076.3 gi|386001599|ref|YP_005919898.1| - 0.037 13.6 1.9 0.06 12.9 1.3 1.3 1 0 0 1 1 1 0 Putative inner membrane protein YbhQ DUF4268 PF14088.1 gi|386001600|ref|YP_005919899.1| - 7.7e-25 87.1 1.2 8.6e-25 87.0 0.2 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4268) HAD_2 PF13419.1 gi|386001601|ref|YP_005919900.1| - 2.8e-20 73.2 0.2 3.5e-20 72.9 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|386001601|ref|YP_005919900.1| - 2.1e-07 31.6 0.0 9.8e-06 26.1 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|386001601|ref|YP_005919900.1| - 0.0035 17.0 0.0 0.0066 16.1 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|386001601|ref|YP_005919900.1| - 0.0042 17.2 0.0 0.0055 16.8 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase 5_nucleotid PF05761.9 gi|386001601|ref|YP_005919900.1| - 0.006 15.1 0.0 0.28 9.6 0.0 2.1 2 0 0 2 2 2 2 5' nucleotidase family NIF PF03031.13 gi|386001601|ref|YP_005919900.1| - 0.013 15.1 0.0 0.16 11.6 0.0 2.1 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase T2SG PF08334.6 gi|386001601|ref|YP_005919900.1| - 0.057 13.1 0.0 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein G Hydrolase_3 PF08282.7 gi|386001601|ref|YP_005919900.1| - 0.079 12.5 0.0 11 5.4 0.0 2.3 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Zip PF02535.17 gi|386001602|ref|YP_005919901.1| - 1.5e-25 89.8 20.2 1.9e-21 76.3 4.9 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter TOM13 PF08219.6 gi|386001602|ref|YP_005919901.1| - 0.51 10.1 4.8 9.2 6.1 0.1 2.6 2 0 0 2 2 2 0 Outer membrane protein TOM13 AAA PF00004.24 gi|386001603|ref|YP_005919902.1| - 2.4e-96 318.9 0.0 3.1e-48 163.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|386001603|ref|YP_005919902.1| - 6.1e-21 74.1 0.2 3.8e-20 71.6 0.3 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|386001603|ref|YP_005919902.1| - 2.4e-15 56.2 0.0 1.2e-06 27.7 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|386001603|ref|YP_005919902.1| - 2.2e-14 53.8 0.1 5.7e-06 26.4 0.0 3.3 3 1 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|386001603|ref|YP_005919902.1| - 1.2e-13 51.3 0.3 0.00019 21.5 0.0 4.1 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|386001603|ref|YP_005919902.1| - 7e-13 48.4 1.3 6e-05 22.7 0.0 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) CDC48_2 PF02933.12 gi|386001603|ref|YP_005919902.1| - 2.4e-12 46.2 0.1 6.8e-12 44.8 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.9 gi|386001603|ref|YP_005919902.1| - 1.1e-11 44.9 0.0 4.4e-05 23.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|386001603|ref|YP_005919902.1| - 1.1e-11 44.1 0.0 0.0001 21.1 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_17 PF13207.1 gi|386001603|ref|YP_005919902.1| - 8.7e-11 42.7 0.0 0.00038 21.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|386001603|ref|YP_005919902.1| - 1.1e-10 41.4 0.0 3.7e-05 23.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|386001603|ref|YP_005919902.1| - 2.1e-10 40.6 0.0 0.00026 20.8 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_25 PF13481.1 gi|386001603|ref|YP_005919902.1| - 5.7e-10 38.9 1.1 0.0048 16.3 0.0 3.5 2 1 1 3 3 3 3 AAA domain AAA_19 PF13245.1 gi|386001603|ref|YP_005919902.1| - 2.6e-09 36.6 4.8 0.0022 17.7 0.0 4.1 4 0 0 4 4 4 2 Part of AAA domain IstB_IS21 PF01695.12 gi|386001603|ref|YP_005919902.1| - 1.4e-08 34.3 0.6 0.0045 16.4 0.1 2.6 3 0 0 3 3 2 2 IstB-like ATP binding protein NACHT PF05729.7 gi|386001603|ref|YP_005919902.1| - 1.7e-08 34.2 0.0 0.033 13.8 0.0 4.0 3 1 1 4 4 4 2 NACHT domain Zeta_toxin PF06414.7 gi|386001603|ref|YP_005919902.1| - 3.4e-08 32.8 0.0 0.0045 16.0 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin Sigma54_activat PF00158.21 gi|386001603|ref|YP_005919902.1| - 8.7e-08 31.8 0.2 0.038 13.4 0.1 3.8 3 1 0 3 3 2 2 Sigma-54 interaction domain AAA_28 PF13521.1 gi|386001603|ref|YP_005919902.1| - 1e-07 32.0 0.1 0.026 14.5 0.0 2.9 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.17 gi|386001603|ref|YP_005919902.1| - 1.3e-07 31.7 0.0 0.029 14.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|386001603|ref|YP_005919902.1| - 1.4e-07 30.8 0.7 0.013 14.6 0.1 2.8 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|386001603|ref|YP_005919902.1| - 5.8e-07 29.8 0.0 0.032 14.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|386001603|ref|YP_005919902.1| - 1.8e-06 28.3 0.0 0.048 13.9 0.0 2.4 2 0 0 2 2 2 2 ABC transporter Sigma54_activ_2 PF14532.1 gi|386001603|ref|YP_005919902.1| - 2.6e-06 27.5 0.0 0.084 12.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|386001603|ref|YP_005919902.1| - 4.7e-06 25.6 0.0 0.055 12.3 0.0 2.6 3 0 0 3 3 2 2 NB-ARC domain DUF815 PF05673.8 gi|386001603|ref|YP_005919902.1| - 1.1e-05 24.5 0.0 0.12 11.2 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|386001603|ref|YP_005919902.1| - 1.2e-05 25.0 0.0 0.03 13.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|386001603|ref|YP_005919902.1| - 1.3e-05 24.9 0.0 0.47 10.0 0.0 3.6 2 2 0 2 2 2 2 Archaeal ATPase KaiC PF06745.8 gi|386001603|ref|YP_005919902.1| - 1.5e-05 24.2 0.1 0.26 10.3 0.0 3.2 2 1 0 3 3 3 2 KaiC PhoH PF02562.11 gi|386001603|ref|YP_005919902.1| - 2.5e-05 23.6 0.2 0.18 11.0 0.1 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_3 PF07726.6 gi|386001603|ref|YP_005919902.1| - 5.7e-05 22.7 0.0 0.19 11.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|386001603|ref|YP_005919902.1| - 0.00011 21.2 0.0 0.3 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 SKI PF01202.17 gi|386001603|ref|YP_005919902.1| - 0.00014 21.7 0.1 0.79 9.5 0.0 3.0 3 0 0 3 3 3 2 Shikimate kinase DUF2075 PF09848.4 gi|386001603|ref|YP_005919902.1| - 0.00017 20.7 0.0 0.36 9.7 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|386001603|ref|YP_005919902.1| - 0.00022 20.8 0.2 0.51 9.8 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_11 PF13086.1 gi|386001603|ref|YP_005919902.1| - 0.00025 20.7 0.0 0.33 10.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain ATP-synt_ab PF00006.20 gi|386001603|ref|YP_005919902.1| - 0.00068 19.1 0.0 0.78 9.2 0.0 2.8 3 0 0 3 3 2 1 ATP synthase alpha/beta family, nucleotide-binding domain UPF0079 PF02367.12 gi|386001603|ref|YP_005919902.1| - 0.00068 19.2 0.1 1.3 8.6 0.0 2.9 3 0 0 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 Guanylate_kin PF00625.16 gi|386001603|ref|YP_005919902.1| - 0.00088 18.7 0.4 5.7 6.3 0.0 4.4 2 2 2 4 4 4 0 Guanylate kinase Bac_DnaA PF00308.13 gi|386001603|ref|YP_005919902.1| - 0.0012 18.5 0.0 0.94 9.0 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein ResIII PF04851.10 gi|386001603|ref|YP_005919902.1| - 0.0022 17.8 0.0 1 9.1 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit NTPase_1 PF03266.10 gi|386001603|ref|YP_005919902.1| - 0.0023 17.6 0.1 1.6 8.4 0.0 3.0 2 1 0 2 2 2 1 NTPase AFG1_ATPase PF03969.11 gi|386001603|ref|YP_005919902.1| - 0.0027 16.5 0.0 0.43 9.3 0.0 2.4 2 0 0 2 2 2 1 AFG1-like ATPase Viral_helicase1 PF01443.13 gi|386001603|ref|YP_005919902.1| - 0.0066 15.9 0.0 2.9 7.3 0.0 2.5 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase T2SE PF00437.15 gi|386001603|ref|YP_005919902.1| - 0.0073 15.2 0.0 3 6.6 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein KAP_NTPase PF07693.9 gi|386001603|ref|YP_005919902.1| - 0.023 13.7 0.2 40 3.0 0.0 3.5 2 2 2 4 4 4 0 KAP family P-loop domain Torsin PF06309.6 gi|386001603|ref|YP_005919902.1| - 0.039 13.8 0.0 6.6 6.6 0.0 2.9 3 0 0 3 3 3 0 Torsin cobW PF02492.14 gi|386001603|ref|YP_005919902.1| - 0.045 13.2 0.2 9.3 5.6 0.0 2.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IPT PF01745.11 gi|386001603|ref|YP_005919902.1| - 0.066 12.3 0.2 30 3.6 0.0 3.2 3 0 0 3 3 3 0 Isopentenyl transferase MCM PF00493.18 gi|386001603|ref|YP_005919902.1| - 0.068 11.9 0.0 6.4 5.4 0.0 2.9 3 0 0 3 3 3 0 MCM2/3/5 family AAA_23 PF13476.1 gi|386001603|ref|YP_005919902.1| - 0.12 12.6 0.0 14 5.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|386001603|ref|YP_005919902.1| - 0.14 11.6 0.5 11 5.3 0.1 3.0 2 2 0 2 2 2 0 AAA-like domain PduV-EutP PF10662.4 gi|386001603|ref|YP_005919902.1| - 0.15 11.5 0.0 18 4.8 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|386001603|ref|YP_005919902.1| - 0.15 12.0 0.0 15 5.5 0.0 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase SRPRB PF09439.5 gi|386001603|ref|YP_005919902.1| - 0.19 10.9 0.0 18 4.5 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit KTI12 PF08433.5 gi|386001603|ref|YP_005919902.1| - 0.2 10.8 0.0 14 4.8 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 GSDH PF07995.6 gi|386001604|ref|YP_005919903.1| - 9e-26 90.7 0.0 2.5e-25 89.2 0.0 1.7 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase NHL PF01436.16 gi|386001604|ref|YP_005919903.1| - 0.00013 21.7 0.6 0.49 10.4 0.0 4.2 4 0 0 4 4 4 2 NHL repeat SGL PF08450.7 gi|386001604|ref|YP_005919903.1| - 0.003 16.9 0.0 0.016 14.5 0.0 2.1 2 1 0 2 2 2 1 SMP-30/Gluconolaconase/LRE-like region PQQ_3 PF13570.1 gi|386001604|ref|YP_005919903.1| - 0.041 14.1 8.7 0.074 13.3 0.2 4.1 5 0 0 5 5 5 0 PQQ-like domain Thioredoxin PF00085.15 gi|386001606|ref|YP_005919905.1| - 5.6e-13 48.4 0.0 6.2e-13 48.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|386001606|ref|YP_005919905.1| - 2.5e-05 24.4 0.0 0.00037 20.6 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain HyaE PF07449.6 gi|386001606|ref|YP_005919905.1| - 0.00084 19.2 0.2 0.0011 18.8 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Radical_SAM PF04055.16 gi|386001607|ref|YP_005919906.1| - 1.4e-21 77.3 0.0 2.6e-20 73.2 0.0 2.6 2 1 0 2 2 2 1 Radical SAM superfamily HTH_AsnC-type PF13404.1 gi|386001607|ref|YP_005919906.1| - 1.3e-09 37.4 0.2 4.2e-09 35.7 0.2 2.0 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fer4_14 PF13394.1 gi|386001607|ref|YP_005919906.1| - 6.2e-09 35.9 0.6 1.7e-08 34.5 0.0 2.0 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|386001607|ref|YP_005919906.1| - 3.1e-08 33.8 0.0 1e-07 32.1 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|386001607|ref|YP_005919906.1| - 3.8e-08 33.5 0.2 8.1e-08 32.4 0.2 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain cwf21 PF08312.7 gi|386001607|ref|YP_005919906.1| - 0.14 11.9 2.7 4.1 7.3 0.2 2.6 2 0 0 2 2 2 0 cwf21 domain Semialdhyde_dhC PF02774.13 gi|386001608|ref|YP_005919907.1| - 6e-37 127.2 0.0 1.3e-36 126.2 0.0 1.5 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|386001608|ref|YP_005919907.1| - 6.1e-26 91.0 0.0 9.7e-26 90.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Voltage_CLC PF00654.15 gi|386001610|ref|YP_005919909.1| - 1.1e-72 244.9 40.5 1.1e-72 244.9 28.1 2.0 2 0 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.23 gi|386001610|ref|YP_005919909.1| - 7.6e-30 102.4 2.6 1.6e-16 59.7 0.1 2.4 2 0 0 2 2 2 2 CBS domain Voltage_CLC PF00654.15 gi|386001611|ref|YP_005919910.1| - 4.2e-77 259.5 40.5 4.2e-76 256.2 24.4 2.0 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.23 gi|386001611|ref|YP_005919910.1| - 2.5e-28 97.5 1.8 1.3e-13 50.4 0.1 2.4 2 0 0 2 2 2 2 CBS domain VCBS PF13517.1 gi|386001612|ref|YP_005919911.1| - 3.6e-23 81.6 33.6 1e-06 29.0 1.6 5.1 1 1 4 5 5 5 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|386001612|ref|YP_005919911.1| - 3.3e-21 74.3 16.9 0.0036 16.9 0.2 5.5 5 0 0 5 5 5 5 FG-GAP repeat BBS2_Mid PF14783.1 gi|386001612|ref|YP_005919911.1| - 1.1e-05 25.1 0.2 39 4.0 0.0 5.0 5 0 0 5 5 5 0 Ciliary BBSome complex subunit 2, middle region PSI_PsaJ PF01701.13 gi|386001612|ref|YP_005919911.1| - 0.00046 19.8 7.4 29 4.5 0.0 5.2 5 0 0 5 5 5 0 Photosystem I reaction centre subunit IX / PsaJ DUF1926 PF09095.6 gi|386001612|ref|YP_005919911.1| - 0.0019 17.4 5.9 39 3.3 0.0 4.9 5 0 0 5 5 5 0 Domain of unknown function (DUF1926) BATS PF06968.8 gi|386001612|ref|YP_005919911.1| - 0.0036 17.1 7.2 22 4.9 0.0 4.4 5 0 0 5 5 5 0 Biotin and Thiamin Synthesis associated domain Adeno_VII PF03228.9 gi|386001612|ref|YP_005919911.1| - 0.035 14.6 4.5 13 6.3 0.0 4.7 5 0 0 5 5 5 0 Adenoviral core protein VII Agro_virD5 PF04730.7 gi|386001612|ref|YP_005919911.1| - 0.1 10.6 5.3 16 3.4 0.0 3.9 5 0 0 5 5 5 0 Agrobacterium VirD5 protein DUF2874 PF11396.3 gi|386001612|ref|YP_005919911.1| - 0.23 11.4 8.7 69 3.5 0.1 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF2874) DUF3150 PF11348.3 gi|386001612|ref|YP_005919911.1| - 0.27 10.3 1.1 33 3.4 0.0 3.9 5 0 0 5 5 5 0 Protein of unknown function (DUF3150) TcdB_toxin_midN PF12256.3 gi|386001612|ref|YP_005919911.1| - 1.4 8.3 11.4 51 3.2 0.0 4.8 1 1 4 5 5 5 0 Insecticide toxin TcdB middle/N-terminal region AMP-binding PF00501.23 gi|386001613|ref|YP_005919912.1| - 2e-104 349.2 0.0 2.4e-104 349.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|386001613|ref|YP_005919912.1| - 8.5e-15 55.4 0.0 1.6e-14 54.5 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PhnI PF05861.7 gi|386001613|ref|YP_005919912.1| - 0.14 10.6 0.0 2.8 6.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial phosphonate metabolism protein (PhnI) YL1_C PF08265.6 gi|386001613|ref|YP_005919912.1| - 1.9 8.1 4.5 6.1 6.4 0.0 3.4 4 0 0 4 4 4 0 YL1 nuclear protein C-terminal domain Fer4_6 PF12837.2 gi|386001614|ref|YP_005919913.1| - 9.7e-08 31.5 8.9 5.8e-05 22.7 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|386001614|ref|YP_005919913.1| - 1.1e-07 31.1 13.9 4.9e-06 25.9 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386001614|ref|YP_005919913.1| - 1.7e-07 30.9 7.2 4.3e-07 29.6 5.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386001614|ref|YP_005919913.1| - 8.7e-07 29.2 18.9 3.2e-05 24.2 6.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386001614|ref|YP_005919913.1| - 2e-06 27.7 0.5 0.007 16.3 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386001614|ref|YP_005919913.1| - 2e-05 25.2 8.3 8.7e-05 23.1 5.8 2.0 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|386001614|ref|YP_005919913.1| - 4e-05 23.7 9.3 0.00017 21.7 6.5 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386001614|ref|YP_005919913.1| - 0.00015 22.0 2.6 0.19 12.0 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386001614|ref|YP_005919913.1| - 0.00025 21.4 5.7 0.021 15.2 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386001614|ref|YP_005919913.1| - 0.00049 20.2 10.3 0.06 13.7 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|386001614|ref|YP_005919913.1| - 0.0052 16.6 14.9 0.02 14.8 2.2 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|386001614|ref|YP_005919913.1| - 0.0066 16.9 17.9 0.055 14.0 3.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|386001614|ref|YP_005919913.1| - 0.077 12.8 12.2 0.51 10.2 8.5 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|386001614|ref|YP_005919913.1| - 1.3 9.5 6.1 1.6 9.1 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|386001614|ref|YP_005919913.1| - 5.9 7.5 9.0 39 4.9 6.2 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain adh_short PF00106.20 gi|386001615|ref|YP_005919914.1| - 1.7e-28 99.5 0.2 2.5e-28 99.1 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|386001615|ref|YP_005919914.1| - 2.6e-25 89.5 0.0 3.2e-25 89.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|386001615|ref|YP_005919914.1| - 1.4e-10 41.1 0.1 2.1e-10 40.5 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|386001615|ref|YP_005919914.1| - 0.0015 18.0 0.0 0.0023 17.4 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|386001615|ref|YP_005919914.1| - 0.0032 16.2 0.0 0.0041 15.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family THF_DHG_CYH_C PF02882.14 gi|386001615|ref|YP_005919914.1| - 0.041 12.9 0.0 0.089 11.8 0.0 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ApbA PF02558.11 gi|386001615|ref|YP_005919914.1| - 0.059 12.8 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Polysacc_synt_2 PF02719.10 gi|386001615|ref|YP_005919914.1| - 0.063 12.1 0.0 0.1 11.4 0.0 1.4 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|386001615|ref|YP_005919914.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 NADH(P)-binding Acetyltransf_1 PF00583.19 gi|386001616|ref|YP_005919915.1| - 1.4e-15 57.0 0.1 5.9e-15 55.0 0.1 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|386001616|ref|YP_005919915.1| - 2.5e-11 43.6 0.1 9e-11 41.9 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|386001616|ref|YP_005919915.1| - 3.6e-09 36.6 0.2 4.6e-07 29.9 0.0 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|386001616|ref|YP_005919915.1| - 3.2e-08 33.4 0.1 1e-06 28.6 0.0 2.8 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386001616|ref|YP_005919915.1| - 9.8e-07 28.4 0.0 1.8e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|386001616|ref|YP_005919915.1| - 3.2e-05 24.1 0.3 9.9e-05 22.5 0.1 1.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|386001616|ref|YP_005919915.1| - 0.00018 21.4 0.0 0.00033 20.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|386001616|ref|YP_005919915.1| - 0.00021 21.1 0.1 0.00038 20.2 0.1 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase MraZ PF02381.13 gi|386001617|ref|YP_005919916.1| - 0.0032 17.1 0.1 0.0086 15.8 0.0 1.7 1 0 0 1 1 1 1 MraZ protein Antitoxin-MazE PF04014.13 gi|386001617|ref|YP_005919916.1| - 0.0033 17.1 1.5 0.0041 16.8 0.1 1.9 3 0 0 3 3 3 1 Antidote-toxin recognition MazE AbrB-like PF14250.1 gi|386001617|ref|YP_005919916.1| - 0.057 13.3 0.0 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 AbrB-like transcriptional regulator DUF3618 PF12277.3 gi|386001617|ref|YP_005919916.1| - 0.5 10.4 5.7 0.82 9.7 1.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3618) Plasmid_stabil PF05016.9 gi|386001618|ref|YP_005919917.1| - 3.7e-08 33.6 0.9 4.3e-08 33.4 0.6 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Plasmid_Txe PF06769.8 gi|386001618|ref|YP_005919917.1| - 6.9e-06 25.7 0.3 9.2e-06 25.3 0.2 1.1 1 0 0 1 1 1 1 Plasmid encoded toxin Txe Plasmid_killer PF05015.8 gi|386001618|ref|YP_005919917.1| - 0.0034 17.4 0.1 0.0054 16.8 0.0 1.5 1 1 0 1 1 1 1 Plasmid maintenance system killer protein Pentapeptide_3 PF13576.1 gi|386001619|ref|YP_005919918.1| - 5e-77 253.5 168.9 2.8e-09 36.7 3.2 11.0 1 1 14 15 15 15 15 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|386001619|ref|YP_005919918.1| - 1.8e-06 27.5 9.2 3.4e-06 26.6 6.4 1.5 1 0 0 1 1 1 1 Ion channel Pentapeptide PF00805.17 gi|386001619|ref|YP_005919918.1| - 0.00014 20.9 26.0 0.79 9.0 0.6 11.3 10 6 0 10 10 10 4 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.1 gi|386001620|ref|YP_005919919.1| - 6.6e-31 105.9 81.1 2.1e-11 43.5 2.5 7.2 2 1 4 7 7 7 6 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|386001620|ref|YP_005919919.1| - 0.087 12.5 15.9 0.71 9.6 9.6 2.9 1 1 1 2 2 2 0 Ion channel IF-2B PF01008.12 gi|386001621|ref|YP_005919920.1| - 6.3e-81 271.4 0.0 7.4e-81 271.2 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Rib_5-P_isom_A PF06026.9 gi|386001622|ref|YP_005919921.1| - 5.5e-57 191.8 0.0 7.4e-57 191.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|386001622|ref|YP_005919921.1| - 2.7e-07 30.3 0.4 2.3e-05 24.1 0.0 2.3 1 1 1 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|386001622|ref|YP_005919921.1| - 0.063 12.1 0.1 0.094 11.6 0.1 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain tRNA-synt_2d PF01409.15 gi|386001623|ref|YP_005919922.1| - 8e-52 175.8 0.0 2.9e-49 167.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|386001623|ref|YP_005919922.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|386001623|ref|YP_005919922.1| - 0.028 13.2 0.0 2.7 6.6 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) AAA_13 PF13166.1 gi|386001624|ref|YP_005919923.1| - 0.00074 18.1 0.3 0.16 10.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain TMF_DNA_bd PF12329.3 gi|386001624|ref|YP_005919923.1| - 0.003 17.3 10.1 0.87 9.4 3.1 3.6 2 2 0 2 2 2 2 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|386001624|ref|YP_005919923.1| - 0.011 15.3 17.0 0.23 11.0 2.6 2.5 2 0 0 2 2 2 0 IncA protein ATG16 PF08614.6 gi|386001624|ref|YP_005919923.1| - 0.011 15.5 14.4 0.66 9.7 4.6 2.9 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF465 PF04325.8 gi|386001624|ref|YP_005919923.1| - 0.012 15.3 2.1 0.043 13.5 1.4 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF465) Lectin_N PF03954.9 gi|386001624|ref|YP_005919923.1| - 0.042 13.2 1.3 1.2 8.5 0.4 3.2 3 1 0 3 3 3 0 Hepatic lectin, N-terminal domain Reo_sigmaC PF04582.7 gi|386001624|ref|YP_005919923.1| - 0.073 12.2 1.5 9 5.3 0.3 2.7 2 1 0 2 2 2 0 Reovirus sigma C capsid protein FlxA PF14282.1 gi|386001624|ref|YP_005919923.1| - 0.077 12.9 0.8 1.2 9.1 0.0 2.8 2 1 0 2 2 2 0 FlxA-like protein ECM11 PF15463.1 gi|386001624|ref|YP_005919923.1| - 0.11 12.7 3.5 1.4 9.2 2.4 2.7 1 1 0 1 1 1 0 Extracellular mutant protein 11 MAD PF05557.8 gi|386001624|ref|YP_005919923.1| - 0.22 9.5 17.4 0.013 13.6 3.5 2.1 2 0 0 2 2 2 0 Mitotic checkpoint protein MscS_porin PF12795.2 gi|386001624|ref|YP_005919923.1| - 0.36 10.1 10.3 0.045 13.0 0.7 2.5 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain Phage_GP20 PF06810.6 gi|386001624|ref|YP_005919923.1| - 0.36 10.2 3.8 4.1 6.8 0.3 3.3 2 2 1 3 3 3 0 Phage minor structural protein GP20 DivIC PF04977.10 gi|386001624|ref|YP_005919923.1| - 0.67 9.4 11.5 0.76 9.3 0.8 3.6 2 1 1 3 3 3 0 Septum formation initiator Atg14 PF10186.4 gi|386001624|ref|YP_005919923.1| - 0.88 8.4 17.6 0.3 10.0 3.2 2.6 2 2 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 BRE1 PF08647.6 gi|386001624|ref|YP_005919923.1| - 1 9.3 4.7 6 6.9 0.2 3.2 2 1 1 3 3 3 0 BRE1 E3 ubiquitin ligase TPR_MLP1_2 PF07926.7 gi|386001624|ref|YP_005919923.1| - 1.8 8.3 10.7 0.42 10.3 1.4 3.1 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF641 PF04859.7 gi|386001624|ref|YP_005919923.1| - 4 7.1 8.1 9.7 5.9 0.8 3.0 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) ADIP PF11559.3 gi|386001624|ref|YP_005919923.1| - 4.6 7.1 9.7 0.55 10.1 0.6 2.8 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding SSFA2_C PF14723.1 gi|386001624|ref|YP_005919923.1| - 4.9 6.8 6.6 21 4.8 3.5 2.6 2 1 0 2 2 2 0 Sperm-specific antigen 2 C-terminus DUF4140 PF13600.1 gi|386001624|ref|YP_005919923.1| - 5.2 7.5 17.6 0.9 10.0 0.9 4.2 3 2 0 3 3 2 0 N-terminal domain of unknown function (DUF4140) Phlebovirus_NSM PF07246.6 gi|386001624|ref|YP_005919923.1| - 6.4 5.8 7.7 0.21 10.7 0.7 1.9 2 1 0 2 2 2 0 Phlebovirus nonstructural protein NS-M Phosphorylase PF00343.15 gi|386001625|ref|YP_005919924.1| - 2.2e-21 75.4 0.0 4.6e-17 61.1 0.0 3.0 3 0 0 3 3 3 2 Carbohydrate phosphorylase Glyco_transf_5 PF08323.6 gi|386001625|ref|YP_005919924.1| - 0.0021 17.5 0.0 0.0046 16.4 0.0 1.5 2 0 0 2 2 2 1 Starch synthase catalytic domain Met_10 PF02475.11 gi|386001626|ref|YP_005919925.1| - 4.3e-48 163.5 0.0 6.8e-48 162.9 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|386001626|ref|YP_005919925.1| - 1.1e-07 31.9 0.2 2e-07 31.0 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386001626|ref|YP_005919925.1| - 2.3e-07 31.3 0.0 4.2e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|386001626|ref|YP_005919925.1| - 9.9e-05 21.9 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.6 gi|386001626|ref|YP_005919925.1| - 0.0034 16.1 0.0 0.0051 15.5 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase TPMT PF05724.6 gi|386001626|ref|YP_005919925.1| - 0.053 12.9 0.0 0.085 12.2 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) UPF0020 PF01170.13 gi|386001626|ref|YP_005919925.1| - 0.055 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DJ-1_PfpI PF01965.19 gi|386001627|ref|YP_005919926.1| - 2.3e-32 111.5 0.0 2.7e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|386001627|ref|YP_005919926.1| - 3.9e-19 68.5 0.0 8.3e-19 67.4 0.0 1.5 1 1 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|386001627|ref|YP_005919926.1| - 0.0012 18.5 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CN_hydrolase PF00795.17 gi|386001628|ref|YP_005919927.1| - 7.8e-07 28.6 0.0 5.7e-06 25.7 0.0 2.1 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase CesA PF11439.3 gi|386001628|ref|YP_005919927.1| - 0.045 13.6 0.2 1.7 8.6 0.0 2.7 1 1 1 2 2 2 0 Type III secretion system filament chaperone CesA NYD-SP28 PF14772.1 gi|386001629|ref|YP_005919928.1| - 0.09 12.8 0.1 0.09 12.8 0.1 1.7 2 0 0 2 2 2 0 Sperm tail PAS_9 PF13426.1 gi|386001630|ref|YP_005919929.1| - 6.5e-55 183.9 0.1 2.1e-15 56.9 0.0 5.9 5 0 0 5 5 5 5 PAS domain PAS_4 PF08448.5 gi|386001630|ref|YP_005919929.1| - 1.1e-54 183.0 9.9 4e-13 49.3 0.0 6.7 7 1 0 7 7 7 5 PAS fold PAS PF00989.19 gi|386001630|ref|YP_005919929.1| - 8.3e-38 128.6 0.5 2.8e-10 39.9 0.0 7.2 6 2 0 6 6 6 5 PAS fold PAS_3 PF08447.6 gi|386001630|ref|YP_005919929.1| - 8.4e-37 125.1 2.2 3.9e-21 74.9 0.1 6.9 6 1 0 6 6 6 4 PAS fold PAS_8 PF13188.1 gi|386001630|ref|YP_005919929.1| - 5.6e-27 92.6 0.4 2.1e-05 24.1 0.0 6.0 6 0 0 6 6 6 4 PAS domain Response_reg PF00072.19 gi|386001630|ref|YP_005919929.1| - 3.9e-23 81.5 0.0 9.1e-23 80.4 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|386001630|ref|YP_005919929.1| - 1.7e-10 40.6 1.0 4.3e-10 39.3 0.1 2.2 3 0 0 3 3 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|386001630|ref|YP_005919929.1| - 5.3e-08 32.8 1.4 0.42 10.6 0.0 7.0 8 0 0 8 8 8 2 PAS fold PAS_10 PF13596.1 gi|386001630|ref|YP_005919929.1| - 6.7e-06 26.3 0.0 3 8.1 0.0 4.7 4 0 0 4 4 4 2 PAS domain HisKA PF00512.20 gi|386001630|ref|YP_005919929.1| - 0.00023 21.0 2.0 0.0059 16.5 0.0 3.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.1 gi|386001630|ref|YP_005919929.1| - 0.0035 17.2 0.0 0.086 12.7 0.0 2.6 2 0 0 2 2 2 1 PAS domain DUF3418 PF11898.3 gi|386001630|ref|YP_005919929.1| - 0.016 13.6 0.4 0.033 12.5 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3418) DUF2064 PF09837.4 gi|386001631|ref|YP_005919930.1| - 0.011 15.3 17.7 3.9 7.0 0.1 5.9 6 0 0 6 6 6 0 Uncharacterized protein conserved in bacteria (DUF2064) HTH_3 PF01381.17 gi|386001633|ref|YP_005919932.1| - 1.3e-16 60.1 0.0 1.6e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|386001633|ref|YP_005919932.1| - 1.5e-13 50.6 0.1 1.7e-13 50.3 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|386001633|ref|YP_005919932.1| - 1.2e-06 28.6 0.0 1.4e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|386001633|ref|YP_005919932.1| - 2.9e-06 27.3 0.0 3.4e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.11 gi|386001633|ref|YP_005919932.1| - 0.00042 19.5 0.0 0.00091 18.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|386001633|ref|YP_005919932.1| - 0.00056 19.4 0.0 0.0009 18.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|386001633|ref|YP_005919932.1| - 0.00078 19.1 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MerR PF00376.18 gi|386001633|ref|YP_005919932.1| - 0.0014 18.1 0.0 0.37 10.3 0.0 2.2 2 0 0 2 2 2 1 MerR family regulatory protein Sigma70_r4_2 PF08281.7 gi|386001633|ref|YP_005919932.1| - 0.0016 17.8 0.0 0.036 13.5 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|386001633|ref|YP_005919932.1| - 0.0039 16.7 0.0 0.0071 15.9 0.0 1.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_25 PF13413.1 gi|386001633|ref|YP_005919932.1| - 0.0044 16.6 0.0 0.0059 16.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|386001633|ref|YP_005919932.1| - 0.0054 16.4 0.0 1.6 8.5 0.0 2.2 2 0 0 2 2 2 1 MerR HTH family regulatory protein HTH_17 PF12728.2 gi|386001633|ref|YP_005919932.1| - 0.014 15.5 0.1 0.031 14.5 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|386001633|ref|YP_005919932.1| - 0.017 14.9 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|386001633|ref|YP_005919932.1| - 0.018 14.6 0.3 0.04 13.4 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|386001633|ref|YP_005919932.1| - 0.049 13.0 0.0 0.067 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CENP-B_N PF04218.8 gi|386001633|ref|YP_005919932.1| - 0.058 12.8 0.1 0.095 12.1 0.1 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain MarR_2 PF12802.2 gi|386001633|ref|YP_005919932.1| - 0.065 12.9 0.0 0.087 12.5 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF2178 PF09946.4 gi|386001634|ref|YP_005919933.1| - 1.5e-17 63.3 4.3 1.7e-17 63.1 3.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) Exosortase_EpsH PF09721.5 gi|386001634|ref|YP_005919933.1| - 0.073 12.2 2.8 0.09 11.9 2.0 1.1 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) DUF2244 PF10003.4 gi|386001634|ref|YP_005919933.1| - 2.7 7.3 6.5 2.6 7.4 1.4 2.1 1 1 1 2 2 2 0 Integral membrane protein (DUF2244) TPR_11 PF13414.1 gi|386001635|ref|YP_005919934.1| - 2.2e-30 104.0 26.4 2.4e-08 33.4 4.2 6.0 3 1 3 6 6 6 6 TPR repeat TPR_1 PF00515.23 gi|386001635|ref|YP_005919934.1| - 1.3e-21 75.2 22.4 0.0012 18.3 0.6 8.9 8 1 1 9 9 9 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001635|ref|YP_005919934.1| - 1.5e-21 76.4 48.8 2.2e-06 28.1 0.9 6.0 4 1 2 6 6 6 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386001635|ref|YP_005919934.1| - 1.6e-19 68.1 34.0 9.2e-05 22.0 0.0 9.5 9 1 1 10 10 10 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001635|ref|YP_005919934.1| - 1.2e-18 65.6 7.2 0.04 14.1 0.0 8.3 7 1 0 7 7 7 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386001635|ref|YP_005919934.1| - 4.9e-17 60.3 12.3 0.0028 17.3 0.0 7.6 7 1 0 7 7 7 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001635|ref|YP_005919934.1| - 2.1e-16 58.9 41.5 0.00058 20.2 0.8 7.2 4 3 4 8 8 6 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001635|ref|YP_005919934.1| - 1.1e-14 54.0 25.1 3.1e-06 27.0 0.5 4.8 2 1 4 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001635|ref|YP_005919934.1| - 7e-11 42.3 32.2 0.00054 20.2 3.2 5.7 3 2 4 7 7 7 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001635|ref|YP_005919934.1| - 1.9e-07 30.3 21.0 0.11 12.3 0.2 6.9 6 2 0 6 6 6 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386001635|ref|YP_005919934.1| - 7.3e-07 29.2 15.1 0.93 10.1 0.2 6.4 6 0 0 6 6 6 3 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|386001635|ref|YP_005919934.1| - 2.3e-05 24.6 3.0 0.073 13.3 0.0 3.3 3 0 0 3 3 3 1 Alkyl sulfatase dimerisation TPR_9 PF13371.1 gi|386001635|ref|YP_005919934.1| - 0.0001 22.0 2.9 0.0001 22.0 2.0 5.4 4 2 1 5 5 5 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|386001635|ref|YP_005919934.1| - 0.00037 19.3 0.6 0.84 8.3 0.0 3.8 4 0 0 4 4 4 1 NMDA receptor-regulated protein 1 TPR_10 PF13374.1 gi|386001635|ref|YP_005919934.1| - 0.0061 16.4 1.5 0.0061 16.4 1.1 5.4 5 0 0 5 5 5 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|386001635|ref|YP_005919934.1| - 0.0085 16.2 3.3 1.6 8.9 0.1 3.3 3 2 0 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 SNAP PF14938.1 gi|386001635|ref|YP_005919934.1| - 0.012 14.8 9.0 0.38 9.8 1.8 3.1 2 1 1 3 3 3 0 Soluble NSF attachment protein, SNAP Exonuc_VII_S PF02609.11 gi|386001635|ref|YP_005919934.1| - 0.026 14.2 3.3 2.1 8.1 0.0 4.1 4 0 0 4 4 4 0 Exonuclease VII small subunit AalphaY_MDB PF04611.7 gi|386001635|ref|YP_005919934.1| - 0.045 13.6 0.6 2.2 8.1 0.1 2.6 2 0 0 2 2 2 0 Mating type protein A alpha Y mating type dependent binding region TPR_4 PF07721.9 gi|386001635|ref|YP_005919934.1| - 0.057 13.8 2.2 0.057 13.8 1.6 6.9 7 0 0 7 7 5 0 Tetratricopeptide repeat TPR_5 PF12688.2 gi|386001635|ref|YP_005919934.1| - 0.4 10.7 11.0 0.037 14.0 2.5 2.9 2 1 0 2 2 2 0 Tetratrico peptide repeat MIT PF04212.13 gi|386001635|ref|YP_005919934.1| - 0.47 10.3 20.7 3.5 7.5 0.6 5.8 5 1 1 6 6 6 0 MIT (microtubule interacting and transport) domain TPR_11 PF13414.1 gi|386001636|ref|YP_005919935.1| - 1.5e-48 162.2 18.6 2.3e-12 46.3 0.2 7.8 3 2 3 7 7 7 7 TPR repeat TPR_2 PF07719.12 gi|386001636|ref|YP_005919935.1| - 5.2e-42 138.4 25.6 1.7e-05 24.3 0.0 11.1 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001636|ref|YP_005919935.1| - 1.1e-40 137.4 32.8 1.7e-11 44.4 0.1 7.5 3 2 5 8 8 8 8 Tetratricopeptide repeat TPR_1 PF00515.23 gi|386001636|ref|YP_005919935.1| - 2.9e-39 131.0 22.1 6.5e-05 22.3 0.0 11.0 11 0 0 11 11 11 8 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001636|ref|YP_005919935.1| - 2.7e-25 88.1 21.6 3e-07 30.2 0.0 7.1 3 2 4 7 7 7 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001636|ref|YP_005919935.1| - 2.7e-22 77.2 33.2 0.0043 17.5 0.0 11.1 4 2 7 11 11 11 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386001636|ref|YP_005919935.1| - 8e-22 75.3 16.5 0.0091 15.7 0.0 10.6 9 2 2 11 11 11 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001636|ref|YP_005919935.1| - 2.9e-19 67.6 11.3 0.0007 19.5 0.1 9.6 7 3 2 9 9 9 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001636|ref|YP_005919935.1| - 2.4e-18 66.2 24.1 0.00013 22.2 0.0 7.2 4 2 4 8 8 8 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001636|ref|YP_005919935.1| - 2.8e-13 48.5 10.6 0.37 10.7 0.0 9.4 10 0 0 10 10 10 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386001636|ref|YP_005919935.1| - 2e-12 46.7 18.5 2.9e-05 23.8 0.0 6.5 4 3 3 7 7 7 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|386001636|ref|YP_005919935.1| - 2.2e-11 43.7 2.0 0.0088 16.1 0.0 5.4 4 2 2 6 6 6 2 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.1 gi|386001636|ref|YP_005919935.1| - 1.7e-07 31.0 6.8 1.8 8.5 0.0 6.2 7 0 0 7 7 6 3 Fis1 C-terminal tetratricopeptide repeat TPR_6 PF13174.1 gi|386001636|ref|YP_005919935.1| - 1.7e-06 28.0 26.4 2.2 8.9 0.0 9.6 10 1 0 10 10 9 2 Tetratricopeptide repeat MIT PF04212.13 gi|386001636|ref|YP_005919935.1| - 4.8e-05 23.1 12.6 0.099 12.5 0.1 5.7 5 1 2 7 7 6 2 MIT (microtubule interacting and transport) domain TPR_3 PF07720.7 gi|386001636|ref|YP_005919935.1| - 5e-05 22.9 6.0 0.51 10.2 0.0 5.7 5 0 0 5 5 5 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|386001636|ref|YP_005919935.1| - 0.00018 21.3 10.6 0.034 13.9 0.1 6.4 5 3 1 6 6 6 1 Domain of Unknown Function (DUF3856) TPR_10 PF13374.1 gi|386001636|ref|YP_005919935.1| - 0.0028 17.5 27.5 0.079 12.9 0.0 8.7 10 0 0 10 10 10 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|386001636|ref|YP_005919935.1| - 0.0032 16.2 0.1 5.6 5.6 0.0 4.0 3 1 1 5 5 5 1 NMDA receptor-regulated protein 1 TPR_20 PF14561.1 gi|386001636|ref|YP_005919935.1| - 0.004 17.2 8.7 1 9.5 0.0 5.0 3 2 1 5 5 5 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|386001636|ref|YP_005919935.1| - 0.022 14.6 20.3 0.35 10.8 1.3 5.9 5 2 1 6 6 6 0 Tetratricopeptide repeat Rapsyn_N PF10579.4 gi|386001636|ref|YP_005919935.1| - 0.028 14.1 0.1 1.9 8.3 0.0 3.8 6 0 0 6 6 5 0 Rapsyn N-terminal myristoylation and linker region BTAD PF03704.12 gi|386001636|ref|YP_005919935.1| - 0.029 14.6 14.4 2.4 8.4 0.0 5.5 5 2 1 6 6 5 0 Bacterial transcriptional activator domain TPR_4 PF07721.9 gi|386001636|ref|YP_005919935.1| - 0.081 13.3 24.8 1.5 9.4 0.2 6.2 6 0 0 6 6 5 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|386001636|ref|YP_005919935.1| - 0.12 11.7 0.4 22 4.4 0.0 3.6 4 1 0 4 4 4 0 26S proteasome subunit RPN7 Alkyl_sulf_dimr PF14863.1 gi|386001636|ref|YP_005919935.1| - 0.65 10.2 5.0 2.4 8.3 0.1 3.3 4 0 0 4 4 3 0 Alkyl sulfatase dimerisation TPR_11 PF13414.1 gi|386001637|ref|YP_005919936.1| - 1.5e-73 242.3 33.8 4.2e-11 42.3 0.0 8.7 3 2 7 10 10 10 10 TPR repeat TPR_1 PF00515.23 gi|386001637|ref|YP_005919936.1| - 1.1e-70 230.5 16.3 1.1e-06 27.9 0.0 14.2 14 0 0 14 14 14 11 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386001637|ref|YP_005919936.1| - 3.4e-66 213.9 22.0 1.4e-06 27.7 0.0 13.6 13 0 0 13 13 13 12 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001637|ref|YP_005919936.1| - 7.4e-55 182.5 49.6 1.2e-10 41.7 0.7 8.6 3 2 6 10 10 10 10 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001637|ref|YP_005919936.1| - 1.4e-50 165.3 8.7 4.6e-06 26.4 0.0 12.8 13 0 0 13 13 13 10 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386001637|ref|YP_005919936.1| - 1e-48 159.5 8.4 0.00044 19.8 0.0 13.1 12 1 1 13 13 13 10 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001637|ref|YP_005919936.1| - 1.2e-41 140.5 37.1 3.6e-09 36.4 0.4 8.4 2 2 9 11 11 11 11 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001637|ref|YP_005919936.1| - 5.7e-39 129.0 35.6 0.00026 21.3 0.5 12.7 5 4 8 13 13 13 9 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001637|ref|YP_005919936.1| - 3.8e-32 110.4 20.4 2.6e-06 27.6 0.1 7.9 5 3 3 8 8 8 8 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386001637|ref|YP_005919936.1| - 1.1e-26 92.4 24.7 3e-08 33.3 0.4 8.2 5 3 3 8 8 8 8 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001637|ref|YP_005919936.1| - 5e-19 66.5 20.7 0.3 10.9 0.0 11.4 12 0 0 12 12 11 5 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386001637|ref|YP_005919936.1| - 1.1e-17 63.2 17.1 0.1 13.1 0.0 11.7 13 0 0 13 13 11 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|386001637|ref|YP_005919936.1| - 1.8e-15 56.8 0.0 0.023 14.8 0.0 6.1 2 1 6 8 8 8 5 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|386001637|ref|YP_005919936.1| - 6.3e-13 48.7 17.1 0.0084 15.9 0.0 8.3 1 1 6 7 7 7 3 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|386001637|ref|YP_005919936.1| - 1.6e-12 47.0 4.7 0.0012 17.6 0.0 6.4 1 1 5 7 7 7 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|386001637|ref|YP_005919936.1| - 2.8e-11 43.1 2.0 0.034 14.0 0.0 5.8 6 0 0 6 6 5 3 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|386001637|ref|YP_005919936.1| - 5.8e-11 41.9 29.3 0.18 11.8 0.1 10.4 10 0 0 10 10 10 2 Tetratricopeptide repeat BTAD PF03704.12 gi|386001637|ref|YP_005919936.1| - 9.5e-10 38.9 16.1 0.0058 16.9 0.0 6.6 5 3 1 7 7 6 2 Bacterial transcriptional activator domain TPR_21 PF09976.4 gi|386001637|ref|YP_005919936.1| - 6.3e-09 35.9 10.7 0.14 12.0 0.0 6.2 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_5 PF12688.2 gi|386001637|ref|YP_005919936.1| - 3.6e-07 30.2 4.6 1.7 8.6 0.3 5.8 3 1 1 5 5 5 2 Tetratrico peptide repeat Coatomer_E PF04733.9 gi|386001637|ref|YP_005919936.1| - 7.8e-07 28.5 0.1 0.083 12.0 0.0 4.2 2 1 2 4 4 4 1 Coatomer epsilon subunit FAT PF02259.18 gi|386001637|ref|YP_005919936.1| - 0.0002 20.4 4.2 0.44 9.4 0.0 4.1 2 2 1 4 4 4 2 FAT domain MIT PF04212.13 gi|386001637|ref|YP_005919936.1| - 0.0016 18.2 12.2 55 3.7 0.0 7.6 7 2 0 7 7 7 0 MIT (microtubule interacting and transport) domain TPR_4 PF07721.9 gi|386001637|ref|YP_005919936.1| - 0.0018 18.4 24.1 2.6 8.7 0.0 9.1 10 0 0 10 10 9 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|386001637|ref|YP_005919936.1| - 0.0084 16.2 5.2 4 7.6 0.1 5.2 3 1 2 6 6 6 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|386001637|ref|YP_005919936.1| - 0.012 15.4 10.6 53 3.7 0.0 7.8 6 2 5 11 11 9 0 Anaphase-promoting complex subunit 5 TPR_3 PF07720.7 gi|386001637|ref|YP_005919936.1| - 0.014 15.2 1.2 2.1 8.2 0.0 4.1 5 0 0 5 5 3 0 Tetratricopeptide repeat RNR_N PF08343.5 gi|386001637|ref|YP_005919936.1| - 0.033 13.9 0.0 0.099 12.4 0.0 1.7 1 0 0 1 1 1 0 Ribonucleotide reductase N-terminal RPN7 PF10602.4 gi|386001637|ref|YP_005919936.1| - 0.54 9.6 3.2 34 3.7 0.0 4.6 6 1 0 6 6 6 0 26S proteasome subunit RPN7 TPR_11 PF13414.1 gi|386001638|ref|YP_005919937.1| - 3.4e-39 132.3 34.8 1.4e-13 50.2 0.1 5.2 3 2 2 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|386001638|ref|YP_005919937.1| - 4.4e-36 121.0 20.7 1.5e-10 40.1 0.2 7.7 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386001638|ref|YP_005919937.1| - 6.1e-33 110.0 30.3 1.1e-09 37.4 0.3 8.1 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001638|ref|YP_005919937.1| - 2.6e-28 97.7 17.2 5.5e-09 35.8 2.1 4.5 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001638|ref|YP_005919937.1| - 1.5e-27 95.6 33.9 1.8e-11 44.3 0.1 5.6 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001638|ref|YP_005919937.1| - 1.6e-23 80.9 6.6 2.3e-08 33.5 0.1 7.5 7 1 0 7 7 7 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386001638|ref|YP_005919937.1| - 2.2e-23 80.2 16.6 1.4e-07 30.7 0.1 8.3 7 2 1 8 8 8 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001638|ref|YP_005919937.1| - 2e-22 77.6 32.4 9.3e-05 22.7 0.1 8.1 2 2 6 8 8 8 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001638|ref|YP_005919937.1| - 2.2e-16 59.9 23.1 4e-08 33.4 0.3 5.2 3 2 2 5 5 5 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|386001638|ref|YP_005919937.1| - 3.1e-13 49.6 1.9 1.9e-06 27.9 0.0 4.0 1 1 3 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|386001638|ref|YP_005919937.1| - 4.4e-12 44.8 22.0 0.0023 17.5 0.1 7.5 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386001638|ref|YP_005919937.1| - 8.8e-11 41.5 21.7 0.016 15.6 0.1 8.0 8 0 0 8 8 8 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|386001638|ref|YP_005919937.1| - 1.3e-08 34.7 14.6 0.0019 18.0 0.1 4.7 2 1 2 5 5 5 2 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|386001638|ref|YP_005919937.1| - 2.5e-08 33.1 7.6 4e-05 22.5 0.1 4.3 2 2 2 4 4 4 1 NMDA receptor-regulated protein 1 TPR_9 PF13371.1 gi|386001638|ref|YP_005919937.1| - 6.7e-08 32.2 17.9 0.00015 21.5 0.2 5.0 3 2 3 6 6 5 4 Tetratricopeptide repeat BTAD PF03704.12 gi|386001638|ref|YP_005919937.1| - 1.9e-06 28.2 17.8 0.011 16.0 0.0 4.5 2 1 1 3 3 3 2 Bacterial transcriptional activator domain TPR_15 PF13429.1 gi|386001638|ref|YP_005919937.1| - 3.8e-05 22.8 9.4 0.0068 15.5 0.4 3.7 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|386001638|ref|YP_005919937.1| - 0.0004 20.4 7.8 0.065 13.3 0.0 4.0 3 2 1 4 4 4 2 Tetratricopeptide repeat TPR_5 PF12688.2 gi|386001638|ref|YP_005919937.1| - 0.00048 20.1 9.3 0.02 14.9 0.0 4.7 2 2 2 4 4 4 1 Tetratrico peptide repeat Fis1_TPR_C PF14853.1 gi|386001638|ref|YP_005919937.1| - 0.00077 19.2 0.4 3 7.8 0.1 3.5 2 1 1 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_4 PF07721.9 gi|386001638|ref|YP_005919937.1| - 0.0034 17.6 23.6 2 9.1 0.0 6.7 6 1 0 6 6 6 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|386001638|ref|YP_005919937.1| - 0.0065 16.3 29.2 0.45 10.5 0.1 6.9 7 0 0 7 7 7 2 Tetratricopeptide repeat SNAP PF14938.1 gi|386001638|ref|YP_005919937.1| - 0.027 13.6 17.1 0.05 12.7 4.2 3.5 2 1 0 3 3 3 0 Soluble NSF attachment protein, SNAP Alkyl_sulf_dimr PF14863.1 gi|386001638|ref|YP_005919937.1| - 0.044 14.0 7.5 0.31 11.2 0.0 3.6 3 2 2 5 5 3 0 Alkyl sulfatase dimerisation PPTA PF01239.17 gi|386001638|ref|YP_005919937.1| - 0.045 13.1 0.1 0.18 11.1 0.0 2.0 2 0 0 2 2 2 0 Protein prenyltransferase alpha subunit repeat DUF1447 PF07288.6 gi|386001638|ref|YP_005919937.1| - 0.12 12.1 0.1 0.38 10.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1447) DUF1250 PF06855.7 gi|386001638|ref|YP_005919937.1| - 0.19 11.2 2.0 28 4.3 0.0 4.4 6 0 0 6 6 5 0 Protein of unknown function (DUF1250) Apc5 PF12862.2 gi|386001638|ref|YP_005919937.1| - 0.76 9.6 3.2 8.3 6.3 0.1 3.7 3 1 1 4 4 4 0 Anaphase-promoting complex subunit 5 TPR_3 PF07720.7 gi|386001638|ref|YP_005919937.1| - 1.5 8.6 6.0 8.3 6.3 0.0 3.9 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_21 PF09976.4 gi|386001638|ref|YP_005919937.1| - 6.1 6.7 21.8 0.3 11.0 0.6 4.5 4 1 1 5 5 5 0 Tetratricopeptide repeat MIT PF04212.13 gi|386001638|ref|YP_005919937.1| - 7.5 6.5 16.7 9.7 6.1 0.3 5.4 4 2 0 5 5 5 0 MIT (microtubule interacting and transport) domain DUF1848 PF08902.6 gi|386001640|ref|YP_005919939.1| - 3.1e-89 299.0 0.0 3.5e-89 298.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1848) GAGA PF09237.6 gi|386001640|ref|YP_005919939.1| - 0.012 15.1 0.3 0.026 14.1 0.2 1.5 1 0 0 1 1 1 0 GAGA factor DNA_ligase_ZBD PF03119.11 gi|386001642|ref|YP_005919941.1| - 0.00031 20.3 3.5 0.0011 18.5 0.3 2.3 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-FPG_IleRS PF06827.9 gi|386001642|ref|YP_005919941.1| - 0.00042 19.8 0.3 0.2 11.3 0.0 2.3 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS Rad50_zn_hook PF04423.9 gi|386001642|ref|YP_005919941.1| - 0.00062 19.1 0.6 0.0031 16.9 0.1 2.1 2 0 0 2 2 2 1 Rad50 zinc hook motif Lar_restr_allev PF14354.1 gi|386001642|ref|YP_005919941.1| - 0.0013 18.9 0.1 0.0015 18.7 0.0 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-TFIIB PF13453.1 gi|386001642|ref|YP_005919941.1| - 0.0016 17.6 2.4 0.0035 16.4 1.7 1.6 1 1 0 1 1 1 1 Transcription factor zinc-finger zf-C4_Topoisom PF01396.14 gi|386001642|ref|YP_005919941.1| - 0.0075 15.7 1.4 0.022 14.2 0.2 2.0 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.1 gi|386001642|ref|YP_005919941.1| - 0.019 14.4 0.4 5 6.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1272 PF06906.6 gi|386001642|ref|YP_005919941.1| - 0.025 14.4 0.4 0.45 10.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-C2HC5 PF06221.8 gi|386001642|ref|YP_005919941.1| - 0.032 13.9 0.1 9 6.1 0.0 2.1 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.1 gi|386001642|ref|YP_005919941.1| - 0.065 12.4 0.6 0.28 10.4 0.5 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|386001642|ref|YP_005919941.1| - 0.078 12.9 4.5 0.23 11.4 0.1 2.4 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|386001642|ref|YP_005919941.1| - 0.086 12.8 3.8 0.33 10.9 0.2 2.6 2 1 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|386001642|ref|YP_005919941.1| - 0.1 12.4 0.4 5.7 6.8 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|386001642|ref|YP_005919941.1| - 0.12 12.2 0.1 0.4 10.5 0.1 1.8 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|386001642|ref|YP_005919941.1| - 0.12 12.0 1.3 4.5 7.0 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-RING_3 PF14369.1 gi|386001642|ref|YP_005919941.1| - 0.13 12.2 1.1 5.3 7.1 0.3 2.2 2 0 0 2 2 2 0 zinc-finger TF_Zn_Ribbon PF08271.7 gi|386001642|ref|YP_005919941.1| - 0.14 11.5 1.5 1.5 8.2 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding ADK_lid PF05191.9 gi|386001642|ref|YP_005919941.1| - 0.17 11.6 1.0 5.4 6.7 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid DnaJ_CXXCXGXG PF00684.14 gi|386001642|ref|YP_005919941.1| - 0.28 11.2 1.5 3.1 7.9 1.1 2.0 1 1 1 2 2 2 0 DnaJ central domain A2L_zn_ribbon PF08792.5 gi|386001642|ref|YP_005919941.1| - 0.34 10.4 1.9 3.3 7.2 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|386001642|ref|YP_005919941.1| - 4.8 7.3 5.8 4.3 7.5 1.2 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DUF4062 PF13271.1 gi|386001643|ref|YP_005919942.1| - 0.0013 18.7 0.0 0.0049 16.8 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4062) UPF0052 PF01933.13 gi|386001645|ref|YP_005919944.1| - 1.5e-22 80.3 0.0 7.6e-22 77.9 0.0 1.9 1 1 0 1 1 1 1 Uncharacterised protein family UPF0052 zf-ZPR1 PF03367.8 gi|386001646|ref|YP_005919945.1| - 9e-43 145.2 0.0 1.1e-42 144.9 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain zf-piccolo PF05715.8 gi|386001646|ref|YP_005919945.1| - 0.15 12.1 0.1 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 Piccolo Zn-finger UPF0547 PF10571.4 gi|386001646|ref|YP_005919945.1| - 0.27 10.9 1.9 1.3 8.7 1.3 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF552 PF04472.7 gi|386001647|ref|YP_005919946.1| - 1.3e-13 50.6 0.3 1.8e-13 50.1 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) SCHIP-1 PF10148.4 gi|386001647|ref|YP_005919946.1| - 0.14 11.4 0.1 0.2 11.0 0.0 1.3 1 1 0 1 1 1 0 Schwannomin-interacting protein 1 SdpI PF13630.1 gi|386001648|ref|YP_005919947.1| - 0.038 13.6 1.6 0.048 13.3 1.1 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family MAPEG PF01124.13 gi|386001648|ref|YP_005919947.1| - 0.064 12.8 0.2 0.072 12.6 0.2 1.2 1 0 0 1 1 1 0 MAPEG family DUF2069 PF09842.4 gi|386001648|ref|YP_005919947.1| - 0.15 12.0 1.2 0.15 12.0 0.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2069) DUF3309 PF11752.3 gi|386001648|ref|YP_005919947.1| - 0.36 10.6 6.4 5.4 6.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3309) PetM PF08041.6 gi|386001648|ref|YP_005919947.1| - 7.1 6.2 10.0 0.33 10.4 2.1 2.2 2 0 0 2 2 2 0 PetM family of cytochrome b6f complex subunit 7 Radical_SAM PF04055.16 gi|386001649|ref|YP_005919948.1| - 4.8e-12 46.3 0.0 1.3e-11 44.9 0.0 1.7 1 1 1 2 2 2 1 Radical SAM superfamily UPF0179 PF03684.8 gi|386001650|ref|YP_005919949.1| - 7.3e-51 171.5 0.7 8.2e-51 171.3 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|386001650|ref|YP_005919949.1| - 0.051 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Transposase DDE domain Fe-ADH_2 PF13685.1 gi|386001651|ref|YP_005919950.1| - 1e-67 228.0 1.0 1.5e-67 227.5 0.7 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|386001651|ref|YP_005919950.1| - 5e-24 84.6 6.4 1.2e-23 83.3 4.4 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|386001651|ref|YP_005919950.1| - 3e-08 32.9 1.0 1.1e-07 31.0 0.7 1.8 1 1 0 1 1 1 1 3-dehydroquinate synthase ABC_tran PF00005.22 gi|386001652|ref|YP_005919951.1| - 1e-30 106.7 0.0 1.7e-30 106.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001652|ref|YP_005919951.1| - 6.9e-09 36.0 0.0 9.3e-06 25.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|386001652|ref|YP_005919951.1| - 2.4e-06 27.6 0.0 4.8e-06 26.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|386001652|ref|YP_005919951.1| - 6.3e-05 23.1 0.2 0.024 14.8 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|386001652|ref|YP_005919951.1| - 0.00061 19.7 0.2 0.014 15.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|386001652|ref|YP_005919951.1| - 0.0019 18.3 0.1 0.0056 16.8 0.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|386001652|ref|YP_005919951.1| - 0.0029 16.8 0.0 1.4 8.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|386001652|ref|YP_005919951.1| - 0.0042 17.4 0.1 0.071 13.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|386001652|ref|YP_005919951.1| - 0.0042 16.8 0.0 0.023 14.4 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase DUF258 PF03193.11 gi|386001652|ref|YP_005919951.1| - 0.0047 16.1 0.0 0.0068 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|386001652|ref|YP_005919951.1| - 0.007 15.5 0.0 0.21 10.7 0.0 2.4 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|386001652|ref|YP_005919951.1| - 0.0082 16.9 0.3 0.13 13.1 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|386001652|ref|YP_005919951.1| - 0.0083 16.4 0.0 0.013 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|386001652|ref|YP_005919951.1| - 0.0085 15.7 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.9 gi|386001652|ref|YP_005919951.1| - 0.014 15.0 0.9 0.029 14.0 0.1 1.9 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Rad17 PF03215.10 gi|386001652|ref|YP_005919951.1| - 0.018 13.7 0.0 0.026 13.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SbcCD_C PF13558.1 gi|386001652|ref|YP_005919951.1| - 0.023 14.6 0.1 0.069 13.0 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|386001652|ref|YP_005919951.1| - 0.028 13.9 0.1 0.48 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|386001652|ref|YP_005919951.1| - 0.035 13.5 0.0 0.066 12.7 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.12 gi|386001652|ref|YP_005919951.1| - 0.038 13.3 0.0 0.07 12.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|386001652|ref|YP_005919951.1| - 0.042 13.2 0.0 0.092 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|386001652|ref|YP_005919951.1| - 0.046 13.5 0.2 0.11 12.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|386001652|ref|YP_005919951.1| - 0.057 12.4 0.0 6 5.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|386001652|ref|YP_005919951.1| - 0.061 13.2 0.0 0.17 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|386001652|ref|YP_005919951.1| - 0.073 13.5 0.0 0.2 12.1 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein AAA_29 PF13555.1 gi|386001652|ref|YP_005919951.1| - 0.081 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|386001652|ref|YP_005919951.1| - 0.084 12.6 0.0 0.35 10.6 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_10 PF12846.2 gi|386001652|ref|YP_005919951.1| - 0.11 11.9 0.2 0.87 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain RNA_helicase PF00910.17 gi|386001652|ref|YP_005919951.1| - 0.17 12.0 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Fer4 PF00037.22 gi|386001653|ref|YP_005919952.1| - 2.3e-13 49.1 10.5 3.7e-08 32.6 3.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|386001653|ref|YP_005919952.1| - 7.2e-10 38.2 8.7 5.3e-08 32.4 2.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386001653|ref|YP_005919952.1| - 1.4e-08 34.9 12.9 5.8e-08 32.9 4.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386001653|ref|YP_005919952.1| - 6.6e-08 32.6 4.5 1.5e-07 31.5 3.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386001653|ref|YP_005919952.1| - 5.9e-07 29.1 5.4 1.7e-06 27.7 3.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386001653|ref|YP_005919952.1| - 6.6e-07 29.0 5.3 1.2e-06 28.2 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386001653|ref|YP_005919952.1| - 8.3e-07 29.6 5.7 0.0046 17.6 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|386001653|ref|YP_005919952.1| - 6.4e-05 22.6 2.9 6.4e-05 22.6 2.0 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386001653|ref|YP_005919952.1| - 0.00082 19.8 9.9 0.07 13.7 6.9 2.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|386001653|ref|YP_005919952.1| - 0.0078 16.7 6.5 0.0078 16.7 4.5 3.4 4 0 0 4 4 2 1 4Fe-4S binding domain Fer4_11 PF13247.1 gi|386001653|ref|YP_005919952.1| - 0.018 14.9 0.8 0.034 14.0 0.5 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386001653|ref|YP_005919952.1| - 0.021 15.1 2.8 0.021 15.1 1.9 3.1 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|386001653|ref|YP_005919952.1| - 0.086 12.8 6.6 0.85 9.7 1.7 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386001653|ref|YP_005919952.1| - 0.34 11.3 6.5 0.57 10.6 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386001653|ref|YP_005919952.1| - 0.52 10.7 7.1 3.1 8.2 2.1 2.6 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|386001653|ref|YP_005919952.1| - 2.6 7.9 8.4 11 5.8 4.3 2.8 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster P12 PF12669.2 gi|386001653|ref|YP_005919952.1| - 8.9 6.6 11.1 0.84 9.8 0.4 3.2 3 0 0 3 3 3 0 Virus attachment protein p12 family Cupin_2 PF07883.6 gi|386001654|ref|YP_005919953.1| - 1.2e-15 56.7 0.1 1.7e-15 56.2 0.1 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|386001654|ref|YP_005919953.1| - 6.1e-06 25.7 0.0 8.8e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|386001654|ref|YP_005919953.1| - 0.00047 19.7 0.0 0.00054 19.6 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|386001654|ref|YP_005919953.1| - 0.0011 18.6 0.0 0.0014 18.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Pirin_C PF05726.8 gi|386001654|ref|YP_005919953.1| - 0.015 15.4 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Cupin_7 PF12973.2 gi|386001654|ref|YP_005919953.1| - 0.035 13.9 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain Auxin_BP PF02041.11 gi|386001654|ref|YP_005919953.1| - 0.057 12.8 0.0 0.088 12.2 0.0 1.5 1 1 0 1 1 1 0 Auxin binding protein CENP-C_C PF11699.3 gi|386001654|ref|YP_005919953.1| - 0.091 12.7 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Radical_SAM PF04055.16 gi|386001655|ref|YP_005919954.1| - 2.5e-15 57.0 0.1 4.4e-15 56.2 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|386001655|ref|YP_005919954.1| - 0.00014 21.8 0.7 0.00043 20.3 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|386001655|ref|YP_005919954.1| - 0.00018 21.6 0.4 0.00042 20.4 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain SRP19 PF01922.12 gi|386001656|ref|YP_005919955.1| - 4.6e-27 94.4 0.2 5.3e-27 94.2 0.2 1.0 1 0 0 1 1 1 1 SRP19 protein DUF211 PF02680.9 gi|386001657|ref|YP_005919956.1| - 4.6e-38 128.9 2.6 5.1e-38 128.7 1.8 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 YjcQ PF09639.5 gi|386001657|ref|YP_005919956.1| - 0.08 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 YjcQ protein PHP PF02811.14 gi|386001658|ref|YP_005919957.1| - 3.2e-11 43.3 0.0 4.1e-11 42.9 0.0 1.2 1 1 0 1 1 1 1 PHP domain TetR_C PF02909.12 gi|386001658|ref|YP_005919957.1| - 0.023 14.3 0.1 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor, C-terminal all-alpha domain PGA_cap PF09587.5 gi|386001658|ref|YP_005919957.1| - 0.12 11.7 0.4 1.1 8.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial capsule synthesis protein PGA_cap DUF2209 PF09974.4 gi|386001659|ref|YP_005919958.1| - 3.4e-29 101.5 0.0 4e-29 101.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) MMR_HSR1 PF01926.18 gi|386001660|ref|YP_005919959.1| - 1e-19 70.6 0.0 1.6e-19 69.9 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|386001660|ref|YP_005919959.1| - 5.5e-06 25.7 0.0 1.9e-05 23.9 0.0 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|386001660|ref|YP_005919959.1| - 1.9e-05 24.1 0.0 0.0012 18.3 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|386001660|ref|YP_005919959.1| - 4.6e-05 23.4 0.0 9.6e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal Miro PF08477.8 gi|386001660|ref|YP_005919959.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|386001660|ref|YP_005919959.1| - 0.018 14.7 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Dynamin_N PF00350.18 gi|386001660|ref|YP_005919959.1| - 0.027 14.2 0.0 0.052 13.3 0.0 1.4 1 0 0 1 1 1 0 Dynamin family PduV-EutP PF10662.4 gi|386001660|ref|YP_005919959.1| - 0.039 13.4 0.0 7.9 5.9 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|386001660|ref|YP_005919959.1| - 0.04 13.3 0.0 2.6 7.4 0.0 2.4 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|386001660|ref|YP_005919959.1| - 0.048 13.9 0.0 0.91 9.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain MOZART2 PF12926.2 gi|386001660|ref|YP_005919959.1| - 0.053 13.1 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Mitotic-spindle organizing gamma-tubulin ring associated DUF258 PF03193.11 gi|386001660|ref|YP_005919959.1| - 0.057 12.5 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arf PF00025.16 gi|386001660|ref|YP_005919959.1| - 0.095 11.9 0.0 0.25 10.5 0.0 1.8 1 1 0 1 1 1 0 ADP-ribosylation factor family ApbE PF02424.10 gi|386001661|ref|YP_005919960.1| - 6.9e-19 68.1 7.1 9.6e-19 67.6 5.0 1.2 1 0 0 1 1 1 1 ApbE family PIN PF01850.16 gi|386001662|ref|YP_005919961.1| - 1.5e-07 31.7 1.8 2.2e-07 31.2 1.2 1.2 1 0 0 1 1 1 1 PIN domain NIF3 PF01784.13 gi|386001662|ref|YP_005919961.1| - 0.038 13.5 0.0 0.043 13.3 0.0 1.1 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) DUF104 PF01954.11 gi|386001663|ref|YP_005919962.1| - 7e-12 45.1 2.8 9.1e-12 44.8 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 TrkA_C PF02080.16 gi|386001663|ref|YP_005919962.1| - 0.056 13.0 0.0 0.074 12.6 0.0 1.2 1 0 0 1 1 1 0 TrkA-C domain RHH_1 PF01402.16 gi|386001664|ref|YP_005919963.1| - 0.00028 20.6 0.4 0.0025 17.6 0.0 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family McrBC PF10117.4 gi|386001666|ref|YP_005919965.1| - 1.1e-44 152.6 0.0 1.3e-44 152.4 0.0 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component HSDR_N_2 PF13588.1 gi|386001666|ref|YP_005919965.1| - 0.055 13.2 0.0 0.099 12.4 0.0 1.3 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) AAA_5 PF07728.9 gi|386001667|ref|YP_005919966.1| - 2.3e-21 75.9 0.0 4.1e-21 75.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|386001667|ref|YP_005919966.1| - 2.3e-09 37.5 0.0 7.8e-09 35.8 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|386001667|ref|YP_005919966.1| - 5.4e-06 26.5 0.0 5.5e-05 23.3 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|386001667|ref|YP_005919966.1| - 5.7e-05 23.9 0.0 0.00053 20.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|386001667|ref|YP_005919966.1| - 0.0002 21.0 0.0 0.00041 20.0 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|386001667|ref|YP_005919966.1| - 0.00046 19.6 0.0 0.0051 16.2 0.0 2.2 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|386001667|ref|YP_005919966.1| - 0.0005 19.5 0.0 0.0033 16.8 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|386001667|ref|YP_005919966.1| - 0.00082 19.6 0.2 0.0055 17.0 0.0 2.5 3 0 0 3 3 2 1 AAA domain AAA_28 PF13521.1 gi|386001667|ref|YP_005919966.1| - 0.0011 18.9 0.1 0.022 14.7 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_24 PF13479.1 gi|386001667|ref|YP_005919966.1| - 0.0021 17.6 0.0 0.0047 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|386001667|ref|YP_005919966.1| - 0.0035 17.3 0.0 0.033 14.1 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|386001667|ref|YP_005919966.1| - 0.0057 16.5 0.0 0.022 14.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|386001667|ref|YP_005919966.1| - 0.0061 16.7 0.1 0.027 14.6 0.0 2.1 2 0 0 2 2 2 1 RNA helicase PhoH PF02562.11 gi|386001667|ref|YP_005919966.1| - 0.0067 15.6 0.0 0.013 14.7 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein RuvB_N PF05496.7 gi|386001667|ref|YP_005919966.1| - 0.015 14.3 0.1 0.82 8.6 0.0 2.6 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus PPV_E1_C PF00519.12 gi|386001667|ref|YP_005919966.1| - 0.017 13.7 0.0 0.026 13.1 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA_11 PF13086.1 gi|386001667|ref|YP_005919966.1| - 0.041 13.4 0.0 0.068 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|386001667|ref|YP_005919966.1| - 0.046 13.4 0.0 0.84 9.2 0.0 2.7 2 1 0 2 2 2 0 Archaeal ATPase AAA_33 PF13671.1 gi|386001667|ref|YP_005919966.1| - 0.047 13.5 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.6 gi|386001667|ref|YP_005919966.1| - 0.047 13.2 0.0 9.9 5.7 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|386001667|ref|YP_005919966.1| - 0.063 12.1 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_30 PF13604.1 gi|386001667|ref|YP_005919966.1| - 0.16 11.5 0.0 0.41 10.2 0.0 1.6 1 1 1 2 2 2 0 AAA domain Torsin PF06309.6 gi|386001667|ref|YP_005919966.1| - 0.23 11.3 0.0 0.49 10.2 0.0 1.5 1 0 0 1 1 1 0 Torsin Mg_chelatase PF01078.16 gi|386001667|ref|YP_005919966.1| - 0.24 10.5 0.0 0.59 9.2 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ResIII PF04851.10 gi|386001667|ref|YP_005919966.1| - 0.25 11.1 0.0 0.59 9.9 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit E1-E2_ATPase PF00122.15 gi|386001668|ref|YP_005919967.1| - 7.1e-65 218.2 1.7 7.1e-65 218.2 1.2 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|386001668|ref|YP_005919967.1| - 8.5e-46 155.7 9.5 8.5e-46 155.7 6.6 1.8 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|386001668|ref|YP_005919967.1| - 3.6e-41 141.9 0.0 1.2e-40 140.1 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|386001668|ref|YP_005919967.1| - 1.3e-19 71.1 0.0 2.5e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|386001668|ref|YP_005919967.1| - 5.6e-19 67.8 0.0 1.1e-18 66.9 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Cation_ATPase_N PF00690.21 gi|386001668|ref|YP_005919967.1| - 1.1e-18 66.4 0.0 2.2e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|386001668|ref|YP_005919967.1| - 3.4e-08 33.3 0.7 0.00019 21.0 0.3 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Lactamase_B PF00753.22 gi|386001669|ref|YP_005919968.1| - 6e-07 29.3 0.8 1.1e-06 28.4 0.6 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|386001669|ref|YP_005919968.1| - 8.1e-07 28.7 0.0 1.8e-05 24.3 0.0 2.3 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|386001669|ref|YP_005919968.1| - 0.014 15.1 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain TctA PF01970.11 gi|386001670|ref|YP_005919969.1| - 2e-71 240.6 40.9 2.4e-71 240.3 28.3 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family HlyIII PF03006.15 gi|386001670|ref|YP_005919969.1| - 0.92 8.8 12.7 0.059 12.7 1.1 3.0 3 0 0 3 3 3 0 Haemolysin-III related Ribosomal_L18e PF00828.14 gi|386001671|ref|YP_005919970.1| - 7.6e-18 65.1 0.1 1.1e-17 64.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|386001672|ref|YP_005919971.1| - 3.5e-26 91.7 0.0 4.2e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|386001673|ref|YP_005919972.1| - 8.7e-37 126.0 1.1 9.8e-37 125.8 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_Rpb6 PF01192.17 gi|386001674|ref|YP_005919973.1| - 2.5e-07 30.3 0.1 2.8e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Ribosomal_S2 PF00318.15 gi|386001675|ref|YP_005919974.1| - 8.5e-41 139.4 0.3 5e-21 74.8 0.2 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.1 gi|386001675|ref|YP_005919974.1| - 0.028 13.7 0.6 0.055 12.8 0.4 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain Avirulence PF03377.8 gi|386001675|ref|YP_005919974.1| - 0.057 12.1 0.0 0.067 11.9 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA Memo PF01875.12 gi|386001676|ref|YP_005919975.1| - 4e-74 248.9 0.0 4.5e-74 248.8 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|386001676|ref|YP_005919975.1| - 0.0026 16.7 0.0 0.0053 15.7 0.0 1.4 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GHMP_kinases_N PF00288.21 gi|386001677|ref|YP_005919976.1| - 1.8e-17 63.1 1.4 3.2e-17 62.3 0.2 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|386001677|ref|YP_005919976.1| - 1.4e-11 44.4 0.5 4e-11 42.9 0.4 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal DUF4346 PF14251.1 gi|386001677|ref|YP_005919976.1| - 0.1 12.3 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4346) AA_kinase PF00696.23 gi|386001678|ref|YP_005919977.1| - 5.2e-30 104.7 0.4 6e-30 104.5 0.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.13 gi|386001679|ref|YP_005919978.1| - 6.3e-26 91.0 0.1 1.5e-13 50.3 0.0 2.2 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|386001679|ref|YP_005919978.1| - 0.0038 16.1 0.3 0.0038 16.1 0.2 2.0 2 1 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|386001679|ref|YP_005919978.1| - 1.4 7.7 4.8 1.1 8.0 1.4 2.2 2 1 0 2 2 2 0 Conserved region in glutamate synthase Lactamase_B PF00753.22 gi|386001680|ref|YP_005919979.1| - 7.6e-14 51.8 0.1 1.4e-13 50.9 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|386001680|ref|YP_005919979.1| - 1.7e-10 40.7 0.1 1.3e-06 28.1 0.0 2.5 2 0 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|386001680|ref|YP_005919979.1| - 2e-08 33.9 1.3 4e-08 32.9 0.1 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase PDEase_II PF02112.10 gi|386001680|ref|YP_005919979.1| - 0.052 12.4 0.1 0.079 11.8 0.0 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II polyprenyl_synt PF00348.12 gi|386001681|ref|YP_005919980.1| - 8.9e-68 227.9 0.1 1.2e-67 227.5 0.1 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase SprT-like PF10263.4 gi|386001682|ref|YP_005919981.1| - 0.011 15.3 3.6 0.013 15.1 2.5 1.2 1 0 0 1 1 1 0 SprT-like family Lsr2 PF11774.3 gi|386001682|ref|YP_005919981.1| - 0.018 14.9 1.0 0.022 14.6 0.7 1.1 1 0 0 1 1 1 0 Lsr2 FbpA PF05833.6 gi|386001682|ref|YP_005919981.1| - 0.1 11.1 0.3 0.1 11.1 0.2 1.0 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) DUF2407_C PF13373.1 gi|386001682|ref|YP_005919981.1| - 0.16 11.8 0.6 0.16 11.8 0.4 1.1 1 0 0 1 1 1 0 DUF2407 C-terminal domain Augurin PF15187.1 gi|386001682|ref|YP_005919981.1| - 0.2 11.5 0.8 0.24 11.2 0.5 1.2 1 0 0 1 1 1 0 Oesophageal cancer-related gene 4 TrmB PF01978.14 gi|386001683|ref|YP_005919982.1| - 2.3e-25 88.0 0.1 4.1e-25 87.2 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|386001683|ref|YP_005919982.1| - 1.9e-05 23.7 0.0 3.7e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.5 gi|386001683|ref|YP_005919982.1| - 0.0019 17.7 0.0 0.0043 16.6 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|386001683|ref|YP_005919982.1| - 0.089 12.9 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|386001683|ref|YP_005919982.1| - 0.13 11.6 0.0 0.28 10.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NPCBM_assoc PF10633.4 gi|386001684|ref|YP_005919983.1| - 1.4e-06 28.1 0.0 0.067 13.2 0.0 3.5 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|386001684|ref|YP_005919983.1| - 0.00015 21.7 0.0 0.024 14.6 0.0 2.8 2 1 0 2 2 2 1 CARDB DUF756 PF05506.7 gi|386001684|ref|YP_005919983.1| - 0.0012 19.2 0.1 9.2 6.8 0.0 3.7 2 1 0 2 2 2 2 Domain of unknown function (DUF756) DUF11 PF01345.13 gi|386001684|ref|YP_005919983.1| - 0.016 15.2 2.4 0.2 11.7 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|386001684|ref|YP_005919983.1| - 0.036 13.2 0.0 0.27 10.3 0.0 2.1 2 0 0 2 2 2 0 Translocon-associated protein beta (TRAPB) HCV_NS4a PF01006.15 gi|386001684|ref|YP_005919983.1| - 8.4 6.0 8.8 3.5 7.2 0.0 3.3 3 0 0 3 3 3 0 Hepatitis C virus non-structural protein NS4a ABC_tran PF00005.22 gi|386001685|ref|YP_005919984.1| - 3e-29 102.0 0.0 4.8e-29 101.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001685|ref|YP_005919984.1| - 1.5e-18 67.8 0.4 4.9e-11 43.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|386001685|ref|YP_005919984.1| - 5.5e-05 23.2 0.1 0.00019 21.4 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|386001685|ref|YP_005919984.1| - 0.00016 21.1 0.0 0.0003 20.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain MutS_V PF00488.16 gi|386001685|ref|YP_005919984.1| - 0.00028 20.3 0.0 0.00051 19.5 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_25 PF13481.1 gi|386001685|ref|YP_005919984.1| - 0.0012 18.2 0.1 0.0026 17.1 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|386001685|ref|YP_005919984.1| - 0.0013 19.0 0.0 0.002 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|386001685|ref|YP_005919984.1| - 0.0049 16.4 0.0 0.0076 15.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|386001685|ref|YP_005919984.1| - 0.0063 16.7 0.0 0.015 15.4 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|386001685|ref|YP_005919984.1| - 0.014 15.2 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|386001685|ref|YP_005919984.1| - 0.027 14.1 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_5 PF07728.9 gi|386001685|ref|YP_005919984.1| - 0.031 14.0 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|386001685|ref|YP_005919984.1| - 0.031 13.9 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|386001685|ref|YP_005919984.1| - 0.032 15.0 0.7 0.061 14.1 0.3 1.8 2 1 0 2 2 1 0 AAA domain SMC_N PF02463.14 gi|386001685|ref|YP_005919984.1| - 0.034 13.3 0.0 0.066 12.4 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|386001685|ref|YP_005919984.1| - 0.046 12.7 0.0 1.2 8.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|386001685|ref|YP_005919984.1| - 0.048 13.4 0.2 0.14 11.9 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_24 PF13479.1 gi|386001685|ref|YP_005919984.1| - 0.052 13.1 0.0 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|386001685|ref|YP_005919984.1| - 0.068 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|386001685|ref|YP_005919984.1| - 0.1 12.3 0.0 0.27 10.9 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|386001685|ref|YP_005919984.1| - 0.14 11.6 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|386001685|ref|YP_005919984.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|386001685|ref|YP_005919984.1| - 0.15 11.6 0.0 0.33 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.2 gi|386001686|ref|YP_005919985.1| - 1.2e-36 126.4 13.1 3.7e-36 124.8 9.1 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|386001686|ref|YP_005919985.1| - 1.3e-28 99.6 12.0 1.3e-28 99.6 8.3 2.4 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|386001686|ref|YP_005919985.1| - 1.2e-14 53.8 0.0 2.2e-14 53.0 0.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|386001686|ref|YP_005919985.1| - 1.1e-08 34.4 5.2 2.5e-08 33.3 3.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|386001686|ref|YP_005919985.1| - 8.6e-05 21.8 2.0 0.00017 20.9 1.4 1.4 1 0 0 1 1 1 1 CcmB protein ABC2_membrane_5 PF13346.1 gi|386001686|ref|YP_005919985.1| - 6.7 5.9 12.5 0.89 8.8 5.5 2.0 2 1 0 2 2 2 0 ABC-2 family transporter protein LRV PF01816.12 gi|386001687|ref|YP_005919986.1| - 2.5e-42 140.2 36.6 9.8e-06 25.4 0.4 10.2 10 0 0 10 10 10 10 Leucine rich repeat variant HEAT_2 PF13646.1 gi|386001687|ref|YP_005919986.1| - 0.0016 18.6 19.3 0.41 10.9 0.6 6.0 1 1 1 2 2 2 1 HEAT repeats HEAT PF02985.17 gi|386001687|ref|YP_005919986.1| - 0.0023 17.8 22.7 0.8 9.9 0.1 8.4 9 0 0 9 9 9 1 HEAT repeat DUF2336 PF10098.4 gi|386001687|ref|YP_005919986.1| - 0.026 13.7 16.5 0.98 8.6 3.7 3.5 3 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2336) bZIP_1 PF00170.16 gi|386001688|ref|YP_005919987.1| - 0.0026 17.6 4.9 0.0026 17.6 3.4 2.0 2 0 0 2 2 2 1 bZIP transcription factor eRF1_2 PF03464.10 gi|386001688|ref|YP_005919987.1| - 0.0031 17.8 0.0 0.0053 17.0 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 DUF641 PF04859.7 gi|386001688|ref|YP_005919987.1| - 0.3 10.8 3.9 0.66 9.7 2.7 1.6 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Phage_GP20 PF06810.6 gi|386001688|ref|YP_005919987.1| - 0.34 10.3 4.3 0.092 12.1 0.9 1.5 2 0 0 2 2 2 0 Phage minor structural protein GP20 DUF4164 PF13747.1 gi|386001688|ref|YP_005919987.1| - 1.7 8.8 17.3 0.068 13.3 7.2 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4164) CENP-Q PF13094.1 gi|386001688|ref|YP_005919987.1| - 6.3 6.8 9.0 1.4 8.9 4.0 1.5 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DHODB_Fe-S_bind PF10418.4 gi|386001689|ref|YP_005919988.1| - 1.4e-10 40.4 2.2 2.6e-10 39.6 1.6 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|386001689|ref|YP_005919988.1| - 0.003 17.6 0.0 0.0047 17.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer2_3 PF13085.1 gi|386001689|ref|YP_005919988.1| - 0.023 14.5 1.0 0.044 13.6 0.7 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Staygreen PF12638.2 gi|386001690|ref|YP_005919989.1| - 0.11 12.0 0.1 0.45 10.0 0.1 1.9 2 0 0 2 2 2 0 Staygreen protein DUF11 PF01345.13 gi|386001691|ref|YP_005919990.1| - 1.1e-06 28.5 0.5 2.6e-06 27.3 0.3 1.7 1 1 0 1 1 1 1 Domain of unknown function DUF11 GATase_3 PF07685.9 gi|386001692|ref|YP_005919991.1| - 8.2e-42 142.4 0.0 1.1e-41 142.0 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|386001692|ref|YP_005919991.1| - 4.9e-27 94.5 0.0 8.1e-27 93.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|386001692|ref|YP_005919991.1| - 1.6e-20 73.5 0.0 3.3e-20 72.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain GATase PF00117.23 gi|386001692|ref|YP_005919991.1| - 4.3e-05 23.0 0.0 9.2e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I MobB PF03205.9 gi|386001692|ref|YP_005919991.1| - 7.1e-05 22.5 0.1 0.00052 19.7 0.0 2.2 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF1611 PF07755.6 gi|386001692|ref|YP_005919991.1| - 0.0084 14.7 0.3 0.58 8.7 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1611) AAA_31 PF13614.1 gi|386001692|ref|YP_005919991.1| - 0.015 15.2 0.3 0.13 12.1 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|386001692|ref|YP_005919991.1| - 0.059 14.1 0.1 0.93 10.3 0.1 2.7 1 1 1 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|386001692|ref|YP_005919991.1| - 0.07 12.6 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|386001692|ref|YP_005919991.1| - 0.11 11.2 0.0 0.86 8.3 0.0 2.1 2 0 0 2 2 2 0 ArgK protein CTP_synth_N PF06418.9 gi|386001692|ref|YP_005919991.1| - 0.12 11.4 0.0 0.21 10.6 0.0 1.4 1 0 0 1 1 1 0 CTP synthase N-terminus SNO PF01174.14 gi|386001692|ref|YP_005919991.1| - 0.14 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family CBS PF00571.23 gi|386001693|ref|YP_005919992.1| - 4.8e-41 138.2 14.4 6.8e-16 57.7 1.5 4.1 4 0 0 4 4 4 4 CBS domain Usp PF00582.21 gi|386001694|ref|YP_005919993.1| - 1.9e-33 115.6 0.8 2.1e-33 115.4 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.15 gi|386001695|ref|YP_005919994.1| - 1.9e-24 86.9 0.0 6.6e-24 85.1 0.0 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|386001695|ref|YP_005919994.1| - 2.6e-09 37.5 8.9 6.4e-09 36.2 6.2 1.6 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|386001695|ref|YP_005919994.1| - 1.1e-07 31.1 0.0 1.6e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|386001695|ref|YP_005919994.1| - 6.4e-06 25.6 1.5 2.6e-05 23.6 0.1 2.4 1 1 0 2 2 2 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|386001695|ref|YP_005919994.1| - 0.0057 16.4 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase RibD_C PF01872.12 gi|386001696|ref|YP_005919995.1| - 4.5e-52 176.5 0.0 5.1e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF169 PF02596.10 gi|386001697|ref|YP_005919996.1| - 1.2e-64 217.7 0.0 1.3e-64 217.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 DUF188 PF02639.9 gi|386001698|ref|YP_005919997.1| - 0.066 12.6 0.0 0.08 12.3 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 Macro PF01661.16 gi|386001699|ref|YP_005919998.1| - 2.4e-44 149.9 0.0 3.1e-44 149.6 0.0 1.1 1 0 0 1 1 1 1 Macro domain Dala_Dala_lig_C PF07478.8 gi|386001700|ref|YP_005919999.1| - 3.2e-26 91.9 0.0 4.7e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_4 PF13535.1 gi|386001700|ref|YP_005919999.1| - 9.3e-19 67.8 0.0 1.6e-17 63.8 0.0 2.5 1 1 0 1 1 1 1 ATP-grasp domain Acetyltransf_3 PF13302.1 gi|386001700|ref|YP_005919999.1| - 1.8e-18 67.0 0.0 5.4e-18 65.5 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|386001700|ref|YP_005919999.1| - 6.1e-12 45.4 0.0 1.9e-11 43.8 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family ATP-grasp_3 PF02655.9 gi|386001700|ref|YP_005919999.1| - 3.8e-11 43.1 0.0 8.7e-11 41.9 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain Acetyltransf_8 PF13523.1 gi|386001700|ref|YP_005919999.1| - 4.6e-09 36.3 0.0 9.6e-09 35.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|386001700|ref|YP_005919999.1| - 6.2e-09 35.9 0.0 9.9e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain ATPgrasp_Ter PF15632.1 gi|386001700|ref|YP_005919999.1| - 1.1e-05 24.3 0.0 0.0013 17.5 0.0 2.3 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|386001700|ref|YP_005919999.1| - 5e-05 22.6 0.0 0.0017 17.7 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Acetyltransf_10 PF13673.1 gi|386001700|ref|YP_005919999.1| - 0.00013 22.0 0.0 0.00039 20.5 0.0 1.8 2 0 0 2 2 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386001700|ref|YP_005919999.1| - 0.00021 20.9 0.0 0.00047 19.8 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein RimK PF08443.6 gi|386001700|ref|YP_005919999.1| - 0.00037 20.0 0.0 0.15 11.5 0.0 2.2 2 0 0 2 2 2 2 RimK-like ATP-grasp domain Acetyltransf_7 PF13508.1 gi|386001700|ref|YP_005919999.1| - 0.0082 16.2 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Dala_Dala_lig_C PF07478.8 gi|386001701|ref|YP_005920000.1| - 5.5e-32 110.8 0.0 7.8e-32 110.3 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_4 PF13535.1 gi|386001701|ref|YP_005920000.1| - 2e-15 56.9 0.0 1.9e-14 53.8 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|386001701|ref|YP_005920000.1| - 7.7e-07 28.1 0.0 0.00024 19.9 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|386001701|ref|YP_005920000.1| - 0.0002 21.2 0.0 0.0019 18.1 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_N PF01820.16 gi|386001701|ref|YP_005920000.1| - 0.00025 21.3 0.0 0.00041 20.6 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase N-terminus GARS_A PF01071.14 gi|386001701|ref|YP_005920000.1| - 0.005 16.4 0.0 0.0085 15.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Radical_SAM PF04055.16 gi|386001702|ref|YP_005920001.1| - 3.3e-14 53.4 0.0 1e-13 51.7 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily LAM_C PF12544.3 gi|386001702|ref|YP_005920001.1| - 1.7e-13 50.7 0.0 2.7e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Fer4_14 PF13394.1 gi|386001702|ref|YP_005920001.1| - 2.2e-05 24.4 0.0 4.3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|386001702|ref|YP_005920001.1| - 0.00029 20.9 0.0 0.00059 19.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ion_trans_2 PF07885.11 gi|386001703|ref|YP_005920002.1| - 3.6e-18 65.0 4.2 3.6e-18 65.0 2.9 2.7 3 0 0 3 3 3 1 Ion channel Ion_trans PF00520.26 gi|386001703|ref|YP_005920002.1| - 4.8e-13 48.8 13.7 4.8e-13 48.8 9.5 1.6 2 1 0 2 2 2 1 Ion transport protein zf-ribbon_3 PF13248.1 gi|386001703|ref|YP_005920002.1| - 0.00034 19.7 0.4 0.00053 19.0 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|386001703|ref|YP_005920002.1| - 0.0035 16.7 0.5 0.0065 15.9 0.3 1.5 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|386001703|ref|YP_005920002.1| - 0.024 14.4 0.4 0.04 13.7 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|386001703|ref|YP_005920002.1| - 0.037 13.6 0.4 0.066 12.8 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ribosomal_L37e PF01907.14 gi|386001703|ref|YP_005920002.1| - 0.15 11.8 4.6 0.17 11.7 1.1 2.0 1 1 1 2 2 2 0 Ribosomal protein L37e UPF0547 PF10571.4 gi|386001703|ref|YP_005920002.1| - 0.17 11.5 0.3 16 5.3 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1656 PF07869.7 gi|386001703|ref|YP_005920002.1| - 0.72 9.6 7.0 0.28 10.9 2.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) TrkH PF02386.11 gi|386001704|ref|YP_005920003.1| - 1.1e-50 172.1 31.3 2.6e-50 170.9 15.1 2.3 2 0 0 2 2 2 2 Cation transport protein AA_permease_2 PF13520.1 gi|386001705|ref|YP_005920004.1| - 7e-44 150.0 40.8 8.4e-44 149.7 28.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|386001705|ref|YP_005920004.1| - 7.4e-40 136.6 41.2 9e-40 136.4 28.6 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|386001705|ref|YP_005920004.1| - 0.0036 17.1 0.5 0.0036 17.1 0.3 5.4 7 0 0 7 7 7 1 C-terminus of AA_permease DUF3464 PF11947.3 gi|386001705|ref|YP_005920004.1| - 5.6 6.4 8.4 9.2 5.7 0.6 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3464) Lactamase_B PF00753.22 gi|386001707|ref|YP_005920006.1| - 5.2e-22 78.4 0.0 7.1e-22 78.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|386001707|ref|YP_005920006.1| - 2.8e-21 75.9 0.0 3.5e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|386001707|ref|YP_005920006.1| - 8.5e-08 32.0 0.0 1.2e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FYRC PF05965.9 gi|386001707|ref|YP_005920006.1| - 0.14 11.9 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 F/Y rich C-terminus AAA PF00004.24 gi|386001708|ref|YP_005920007.1| - 1e-35 122.8 0.0 2.1e-35 121.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|386001708|ref|YP_005920007.1| - 1.7e-05 25.5 3.0 7.5e-05 23.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|386001708|ref|YP_005920007.1| - 5.3e-05 22.9 0.1 0.0003 20.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|386001708|ref|YP_005920007.1| - 0.0012 19.2 0.3 0.0066 16.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|386001708|ref|YP_005920007.1| - 0.004 17.0 0.1 0.016 15.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|386001708|ref|YP_005920007.1| - 0.0045 16.4 0.8 0.047 13.0 0.0 2.7 1 1 1 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|386001708|ref|YP_005920007.1| - 0.0068 16.5 0.5 0.8 9.8 0.1 2.6 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|386001708|ref|YP_005920007.1| - 0.0085 16.0 0.4 0.033 14.1 0.0 2.2 3 0 0 3 3 2 1 AAA domain DUF815 PF05673.8 gi|386001708|ref|YP_005920007.1| - 0.013 14.4 0.0 0.019 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|386001708|ref|YP_005920007.1| - 0.016 14.9 0.4 0.047 13.4 0.1 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_16 PF13191.1 gi|386001708|ref|YP_005920007.1| - 0.017 15.1 2.9 1.1 9.1 0.1 3.0 2 1 1 4 4 3 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|386001708|ref|YP_005920007.1| - 0.018 14.9 0.1 0.25 11.3 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase IstB_IS21 PF01695.12 gi|386001708|ref|YP_005920007.1| - 0.022 14.1 0.0 0.09 12.1 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein TIP49 PF06068.8 gi|386001708|ref|YP_005920007.1| - 0.029 13.0 0.0 0.056 12.1 0.0 1.5 1 0 0 1 1 1 0 TIP49 C-terminus DegS PF05384.6 gi|386001708|ref|YP_005920007.1| - 0.03 13.5 1.6 0.1 11.7 0.4 2.3 2 1 0 2 2 2 0 Sensor protein DegS RuvB_N PF05496.7 gi|386001708|ref|YP_005920007.1| - 0.035 13.1 0.0 0.072 12.1 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_11 PF13086.1 gi|386001708|ref|YP_005920007.1| - 0.051 13.1 0.0 0.19 11.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain HATPase_c_2 PF13581.1 gi|386001708|ref|YP_005920007.1| - 0.052 13.3 0.0 0.15 11.8 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Mg_chelatase PF01078.16 gi|386001708|ref|YP_005920007.1| - 0.075 12.1 0.0 0.17 11.0 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ADK PF00406.17 gi|386001708|ref|YP_005920007.1| - 0.13 12.1 0.1 20 5.0 0.0 2.7 2 0 0 2 2 2 0 Adenylate kinase AAA_2 PF07724.9 gi|386001708|ref|YP_005920007.1| - 0.16 11.8 1.2 0.74 9.7 0.0 2.6 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_24 PF13479.1 gi|386001708|ref|YP_005920007.1| - 0.19 11.2 0.6 0.37 10.3 0.4 1.4 1 0 0 1 1 1 0 AAA domain HMGL-like PF00682.14 gi|386001709|ref|YP_005920008.1| - 5.3e-65 219.3 0.6 1.1e-64 218.3 0.4 1.6 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|386001709|ref|YP_005920008.1| - 2.1e-33 114.9 1.3 4.8e-33 113.7 0.9 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain TPP_enzyme_N PF02776.13 gi|386001710|ref|YP_005920009.1| - 2.3e-62 209.5 0.1 9.4e-62 207.5 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|386001710|ref|YP_005920009.1| - 2.3e-53 179.6 0.1 4.3e-53 178.7 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|386001710|ref|YP_005920009.1| - 2.3e-52 176.6 0.1 3.7e-51 172.6 0.1 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|386001710|ref|YP_005920009.1| - 0.028 13.9 0.1 0.054 12.9 0.1 1.4 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALS_ss_C PF10369.4 gi|386001711|ref|YP_005920010.1| - 2.1e-31 107.4 5.7 2.6e-31 107.1 2.4 2.0 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|386001711|ref|YP_005920010.1| - 7.8e-22 76.8 0.7 7e-21 73.8 0.0 2.4 2 1 0 2 2 2 1 ACT domain ACT PF01842.20 gi|386001711|ref|YP_005920010.1| - 1.1e-15 56.6 1.3 2.6e-15 55.5 0.1 2.1 2 1 1 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|386001711|ref|YP_005920010.1| - 3e-06 27.4 2.1 4.5e-06 26.9 0.1 2.0 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|386001711|ref|YP_005920010.1| - 0.0052 16.4 0.8 5 6.9 0.1 3.1 2 1 0 2 2 2 2 ACT domain NIL PF09383.5 gi|386001711|ref|YP_005920010.1| - 0.012 15.1 0.0 0.42 10.2 0.0 2.4 2 0 0 2 2 2 0 NIL domain KH_1 PF00013.24 gi|386001711|ref|YP_005920010.1| - 0.037 13.6 2.0 0.071 12.7 0.2 2.3 3 0 0 3 3 3 0 KH domain Ras_bdg_2 PF14847.1 gi|386001711|ref|YP_005920010.1| - 0.053 13.4 0.2 0.18 11.7 0.0 1.9 2 0 0 2 2 2 0 Ras-binding domain of Byr2 IlvN PF07991.7 gi|386001712|ref|YP_005920011.1| - 1.6e-74 248.7 0.1 2e-74 248.4 0.0 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|386001712|ref|YP_005920011.1| - 2.3e-55 186.5 0.1 3.2e-55 186.0 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|386001712|ref|YP_005920011.1| - 5.2e-08 32.2 0.0 8.4e-08 31.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|386001712|ref|YP_005920011.1| - 1.5e-06 28.5 0.0 2.5e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|386001712|ref|YP_005920011.1| - 3.3e-06 27.0 0.0 5.4e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|386001712|ref|YP_005920011.1| - 1.5e-05 24.9 0.1 2.7e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|386001712|ref|YP_005920011.1| - 0.003 18.0 0.0 0.0053 17.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Oxidored_nitro PF00148.14 gi|386001712|ref|YP_005920011.1| - 0.011 14.3 0.0 0.014 14.0 0.0 1.3 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase 3HCDH_N PF02737.13 gi|386001712|ref|YP_005920011.1| - 0.023 14.3 0.0 0.045 13.4 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Mur_ligase PF01225.20 gi|386001712|ref|YP_005920011.1| - 0.023 14.7 0.1 0.087 12.9 0.1 2.0 1 1 0 1 1 1 0 Mur ligase family, catalytic domain Nitro_FeMo-Co PF02579.12 gi|386001712|ref|YP_005920011.1| - 0.11 12.6 0.1 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor DUF2283 PF10049.4 gi|386001713|ref|YP_005920012.1| - 8.7e-11 41.5 0.4 1.5e-10 40.7 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) S-layer PF07752.6 gi|386001714|ref|YP_005920013.1| - 2.4e-62 210.4 4.2 4.7e-31 107.9 0.5 2.0 1 1 1 2 2 2 2 S-layer protein PrcB_C PF14343.1 gi|386001714|ref|YP_005920013.1| - 0.00099 18.7 0.3 1.9 8.2 0.0 2.7 2 0 0 2 2 2 2 PrcB C-terminal NTP_transf_2 PF01909.18 gi|386001715|ref|YP_005920014.1| - 2.7e-14 53.2 0.4 3.2e-14 53.0 0.3 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|386001716|ref|YP_005920015.1| - 7e-27 93.4 0.2 8.1e-27 93.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Lipoprotein_11 PF03260.8 gi|386001716|ref|YP_005920015.1| - 0.13 11.2 0.0 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 Lepidopteran low molecular weight (30 kD) lipoprotein DUF2283 PF10049.4 gi|386001717|ref|YP_005920016.1| - 2.2e-11 43.4 0.4 3.1e-11 42.9 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF86 PF01934.12 gi|386001719|ref|YP_005920018.1| - 4.8e-25 87.5 0.1 5.8e-25 87.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|386001720|ref|YP_005920019.1| - 3.1e-15 56.2 0.0 3.3e-15 56.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain UPF0150 PF03681.10 gi|386001721|ref|YP_005920020.1| - 5e-13 48.4 0.3 7e-13 47.9 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|386001721|ref|YP_005920020.1| - 0.051 13.6 0.0 0.068 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) Methyltransf_11 PF08241.7 gi|386001723|ref|YP_005920022.1| - 6.2e-14 52.2 0.0 9.5e-14 51.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386001723|ref|YP_005920022.1| - 1.1e-12 48.5 0.0 2.1e-12 47.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386001723|ref|YP_005920022.1| - 1.9e-12 47.4 0.0 3.6e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386001723|ref|YP_005920022.1| - 2.3e-10 40.7 0.0 4.1e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386001723|ref|YP_005920022.1| - 1.2e-09 37.9 0.0 1.5e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001723|ref|YP_005920022.1| - 4.6e-09 36.2 0.0 5.9e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386001723|ref|YP_005920022.1| - 1.6e-05 24.1 0.0 2.3e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|386001723|ref|YP_005920022.1| - 4e-05 23.6 0.0 7.5e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|386001723|ref|YP_005920022.1| - 6.2e-05 22.4 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|386001723|ref|YP_005920022.1| - 9.5e-05 21.6 0.0 0.00014 21.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.6 gi|386001723|ref|YP_005920022.1| - 0.00043 19.7 0.0 0.00064 19.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CheR PF01739.13 gi|386001723|ref|YP_005920022.1| - 0.018 14.3 0.0 0.85 8.8 0.0 2.3 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain CbiA PF01656.18 gi|386001724|ref|YP_005920023.1| - 4.4e-22 78.4 0.1 6.8e-22 77.8 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|386001724|ref|YP_005920023.1| - 7.2e-07 29.2 0.0 2.1e-06 27.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|386001724|ref|YP_005920023.1| - 7.4e-06 26.7 0.2 2.4e-05 25.1 0.0 1.9 2 1 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|386001724|ref|YP_005920023.1| - 1.3e-05 24.9 0.1 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase MipZ PF09140.6 gi|386001724|ref|YP_005920023.1| - 2.5e-05 23.4 0.0 0.0001 21.4 0.0 1.8 2 0 0 2 2 2 1 ATPase MipZ AAA_10 PF12846.2 gi|386001724|ref|YP_005920023.1| - 2.8e-05 23.7 0.4 9.1e-05 22.0 0.1 1.9 1 1 1 2 2 2 1 AAA-like domain ArsA_ATPase PF02374.10 gi|386001724|ref|YP_005920023.1| - 2.9e-05 23.2 1.2 5.2e-05 22.4 0.4 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase DUF87 PF01935.12 gi|386001724|ref|YP_005920023.1| - 4.8e-05 23.3 0.2 8.2e-05 22.5 0.0 1.5 2 0 0 2 2 1 1 Domain of unknown function DUF87 AAA_25 PF13481.1 gi|386001724|ref|YP_005920023.1| - 5.5e-05 22.6 0.0 0.00018 20.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|386001724|ref|YP_005920023.1| - 5.5e-05 22.7 0.2 0.00025 20.5 0.0 2.0 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain KTI12 PF08433.5 gi|386001724|ref|YP_005920023.1| - 6.2e-05 22.3 0.0 0.00012 21.4 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Fer4_NifH PF00142.13 gi|386001724|ref|YP_005920023.1| - 0.00015 21.0 0.1 0.00028 20.1 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MobB PF03205.9 gi|386001724|ref|YP_005920023.1| - 0.00027 20.6 0.1 0.00059 19.5 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|386001724|ref|YP_005920023.1| - 0.00074 19.5 0.0 0.0019 18.2 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|386001724|ref|YP_005920023.1| - 0.0013 17.8 0.0 0.0021 17.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin Sigma54_activ_2 PF14532.1 gi|386001724|ref|YP_005920023.1| - 0.0018 18.3 0.0 0.38 10.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|386001724|ref|YP_005920023.1| - 0.0024 18.1 0.4 0.01 16.1 0.0 2.1 2 1 1 3 3 3 1 AAA domain TrwB_AAD_bind PF10412.4 gi|386001724|ref|YP_005920023.1| - 0.0026 16.4 0.0 0.042 12.4 0.0 2.3 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.1 gi|386001724|ref|YP_005920023.1| - 0.0063 16.4 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain Miro PF08477.8 gi|386001724|ref|YP_005920023.1| - 0.0075 16.7 0.1 0.26 11.7 0.0 2.3 2 0 0 2 2 2 1 Miro-like protein KaiC PF06745.8 gi|386001724|ref|YP_005920023.1| - 0.017 14.2 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 KaiC FtsK_SpoIIIE PF01580.13 gi|386001724|ref|YP_005920023.1| - 0.021 14.3 0.1 0.036 13.5 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Thymidylate_kin PF02223.12 gi|386001724|ref|YP_005920023.1| - 0.023 14.0 0.1 0.16 11.3 0.0 2.2 3 0 0 3 3 2 0 Thymidylate kinase TrkA_N PF02254.13 gi|386001724|ref|YP_005920023.1| - 0.024 14.6 0.0 0.76 9.7 0.0 2.5 2 1 0 2 2 2 0 TrkA-N domain ATP_bind_1 PF03029.12 gi|386001724|ref|YP_005920023.1| - 0.025 14.1 0.2 0.078 12.5 0.1 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CoaE PF01121.15 gi|386001724|ref|YP_005920023.1| - 0.033 13.6 0.0 0.28 10.5 0.0 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase T2SE PF00437.15 gi|386001724|ref|YP_005920023.1| - 0.033 13.0 0.0 0.065 12.1 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein YhjQ PF06564.7 gi|386001724|ref|YP_005920023.1| - 0.038 13.3 0.0 0.15 11.3 0.0 1.8 2 0 0 2 2 2 0 YhjQ protein RNA_helicase PF00910.17 gi|386001724|ref|YP_005920023.1| - 0.051 13.7 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.1 gi|386001724|ref|YP_005920023.1| - 0.054 13.6 0.0 0.12 12.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_29 PF13555.1 gi|386001724|ref|YP_005920023.1| - 0.056 12.9 0.6 0.18 11.3 0.1 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain Abhydrolase_5 PF12695.2 gi|386001724|ref|YP_005920023.1| - 0.059 13.1 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Alpha/beta hydrolase family ArgK PF03308.11 gi|386001724|ref|YP_005920023.1| - 0.06 12.1 0.1 0.11 11.2 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_26 PF13500.1 gi|386001724|ref|YP_005920023.1| - 0.085 12.4 1.0 8.6 5.9 0.3 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|386001724|ref|YP_005920023.1| - 0.093 13.0 0.1 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter KAP_NTPase PF07693.9 gi|386001724|ref|YP_005920023.1| - 0.096 11.6 0.0 0.096 11.6 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA PF00004.24 gi|386001724|ref|YP_005920023.1| - 0.1 12.8 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mur_ligase_M PF08245.7 gi|386001724|ref|YP_005920023.1| - 0.11 12.5 0.0 1.2 9.1 0.0 2.1 2 0 0 2 2 2 0 Mur ligase middle domain PRK PF00485.13 gi|386001724|ref|YP_005920023.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family LpxK PF02606.9 gi|386001724|ref|YP_005920023.1| - 0.13 11.2 0.1 0.73 8.7 0.1 2.0 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase NB-ARC PF00931.17 gi|386001724|ref|YP_005920023.1| - 0.14 10.9 0.1 0.25 10.1 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain G-alpha PF00503.15 gi|386001724|ref|YP_005920023.1| - 0.15 10.7 0.2 0.84 8.2 0.0 1.9 2 0 0 2 2 2 0 G-protein alpha subunit AAA_24 PF13479.1 gi|386001724|ref|YP_005920023.1| - 0.15 11.6 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|386001725|ref|YP_005920024.1| - 6.2e-30 104.2 0.0 8.1e-30 103.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001725|ref|YP_005920024.1| - 4.8e-13 49.7 0.0 1.8e-06 28.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|386001725|ref|YP_005920024.1| - 8.5e-07 28.4 0.0 0.00014 21.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|386001725|ref|YP_005920024.1| - 6.7e-06 25.4 0.1 0.0096 15.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|386001725|ref|YP_005920024.1| - 0.00013 21.4 0.2 0.00027 20.4 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|386001725|ref|YP_005920024.1| - 0.00033 20.3 0.1 0.00079 19.1 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|386001725|ref|YP_005920024.1| - 0.00068 19.6 0.1 0.00099 19.1 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|386001725|ref|YP_005920024.1| - 0.0016 18.5 0.0 0.14 12.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|386001725|ref|YP_005920024.1| - 0.0027 17.4 0.1 0.015 15.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|386001725|ref|YP_005920024.1| - 0.0038 17.1 0.1 0.05 13.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|386001725|ref|YP_005920024.1| - 0.0047 16.6 0.1 0.0081 15.8 0.1 1.3 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|386001725|ref|YP_005920024.1| - 0.0058 16.8 0.1 0.027 14.6 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.15 gi|386001725|ref|YP_005920024.1| - 0.0064 15.2 0.0 0.0084 14.8 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit SbcCD_C PF13558.1 gi|386001725|ref|YP_005920024.1| - 0.0075 16.1 0.0 0.1 12.5 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|386001725|ref|YP_005920024.1| - 0.0083 15.7 0.1 0.014 14.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|386001725|ref|YP_005920024.1| - 0.0084 16.4 0.1 0.026 14.8 0.1 1.6 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|386001725|ref|YP_005920024.1| - 0.0095 15.1 0.0 0.018 14.1 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.4 gi|386001725|ref|YP_005920024.1| - 0.012 15.1 0.2 0.05 13.1 0.1 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Arch_ATPase PF01637.13 gi|386001725|ref|YP_005920024.1| - 0.014 15.1 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|386001725|ref|YP_005920024.1| - 0.015 14.7 0.1 0.41 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|386001725|ref|YP_005920024.1| - 0.015 14.7 0.1 0.39 10.1 0.1 2.3 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|386001725|ref|YP_005920024.1| - 0.023 14.4 0.2 0.096 12.3 0.1 1.9 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.1 gi|386001725|ref|YP_005920024.1| - 0.026 14.1 0.1 0.06 12.9 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.1 gi|386001725|ref|YP_005920024.1| - 0.038 13.9 0.1 0.07 13.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|386001725|ref|YP_005920024.1| - 0.058 12.2 0.0 0.12 11.1 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|386001725|ref|YP_005920024.1| - 0.066 13.0 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|386001725|ref|YP_005920024.1| - 0.1 11.1 0.5 11 4.4 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class RNA_helicase PF00910.17 gi|386001725|ref|YP_005920024.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.1 gi|386001725|ref|YP_005920024.1| - 0.14 12.4 0.1 0.45 10.8 0.1 1.7 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|386001725|ref|YP_005920024.1| - 0.16 11.0 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin FecCD PF01032.13 gi|386001726|ref|YP_005920025.1| - 8.8e-89 297.3 29.6 1.1e-88 297.1 20.5 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|386001726|ref|YP_005920025.1| - 5.7e-06 25.8 12.7 1e-05 24.9 8.8 1.4 1 0 0 1 1 1 1 ABC 3 transport family GHMP_kinases_N PF00288.21 gi|386001726|ref|YP_005920025.1| - 0.013 15.5 7.5 0.52 10.4 0.1 3.0 3 0 0 3 3 3 0 GHMP kinases N terminal domain DUF975 PF06161.6 gi|386001726|ref|YP_005920025.1| - 8.8 5.9 12.1 1.1 8.9 5.3 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF975) Peripla_BP_2 PF01497.13 gi|386001727|ref|YP_005920026.1| - 4.5e-26 91.4 0.1 5.8e-26 91.0 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|386001728|ref|YP_005920027.1| - 1.6e-27 96.2 0.0 2.3e-27 95.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein EF-hand_1 PF00036.27 gi|386001728|ref|YP_005920027.1| - 0.13 11.6 1.1 0.36 10.2 0.2 2.2 2 0 0 2 2 2 0 EF hand Dockerin_1 PF00404.13 gi|386001728|ref|YP_005920027.1| - 5.8 6.8 8.0 1.8 8.4 2.0 2.7 2 0 0 2 2 2 0 Dockerin type I repeat Peripla_BP_2 PF01497.13 gi|386001729|ref|YP_005920028.1| - 2.4e-23 82.5 0.0 5.2e-23 81.3 0.0 1.6 1 0 0 1 1 1 1 Periplasmic binding protein EF-hand_5 PF13202.1 gi|386001729|ref|YP_005920028.1| - 0.052 12.9 0.6 0.24 10.7 0.4 2.2 1 0 0 1 1 1 0 EF hand ABC_tran PF00005.22 gi|386001730|ref|YP_005920029.1| - 7.6e-35 120.1 0.0 1e-34 119.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001730|ref|YP_005920029.1| - 5.3e-12 46.2 0.0 3.8e-07 30.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|386001730|ref|YP_005920029.1| - 8.1e-08 32.4 2.0 1.3e-07 31.7 1.4 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|386001730|ref|YP_005920029.1| - 7.6e-06 26.0 0.6 3.8e-05 23.8 0.4 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|386001730|ref|YP_005920029.1| - 4.2e-05 22.8 0.0 8.7e-05 21.8 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|386001730|ref|YP_005920029.1| - 0.00029 21.0 0.1 0.0027 17.8 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|386001730|ref|YP_005920029.1| - 0.001 19.8 0.4 0.0018 19.1 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|386001730|ref|YP_005920029.1| - 0.0011 18.4 0.1 0.071 12.5 0.1 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_19 PF13245.1 gi|386001730|ref|YP_005920029.1| - 0.0022 17.7 0.1 0.0069 16.1 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|386001730|ref|YP_005920029.1| - 0.0036 17.1 0.0 0.0063 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|386001730|ref|YP_005920029.1| - 0.004 17.4 0.1 0.019 15.3 0.0 1.9 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|386001730|ref|YP_005920029.1| - 0.0086 15.9 0.0 0.067 13.1 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|386001730|ref|YP_005920029.1| - 0.0095 15.4 0.1 0.018 14.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|386001730|ref|YP_005920029.1| - 0.011 15.0 0.6 0.035 13.5 0.4 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|386001730|ref|YP_005920029.1| - 0.012 15.3 1.7 0.15 11.7 0.1 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|386001730|ref|YP_005920029.1| - 0.015 14.9 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Sigma54_activ_2 PF14532.1 gi|386001730|ref|YP_005920029.1| - 0.019 15.0 0.2 4.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain NACHT PF05729.7 gi|386001730|ref|YP_005920029.1| - 0.021 14.4 0.4 0.086 12.4 0.1 2.0 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.1 gi|386001730|ref|YP_005920029.1| - 0.03 14.3 0.1 0.21 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|386001730|ref|YP_005920029.1| - 0.051 12.0 0.0 1.7 7.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|386001730|ref|YP_005920029.1| - 0.052 12.7 0.0 0.065 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|386001730|ref|YP_005920029.1| - 0.059 12.7 0.2 0.49 9.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|386001730|ref|YP_005920029.1| - 0.06 12.1 0.1 0.096 11.5 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|386001730|ref|YP_005920029.1| - 0.068 12.7 0.4 1.5 8.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|386001730|ref|YP_005920029.1| - 0.069 12.3 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|386001730|ref|YP_005920029.1| - 0.1 11.6 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus PduV-EutP PF10662.4 gi|386001730|ref|YP_005920029.1| - 0.15 11.5 0.1 0.47 9.9 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|386001731|ref|YP_005920030.1| - 1.7e-20 73.7 0.0 2.2e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|386001731|ref|YP_005920030.1| - 2.6e-16 59.7 0.3 4.9e-16 58.8 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region Mg_chelatase PF01078.16 gi|386001731|ref|YP_005920030.1| - 0.0017 17.5 0.0 0.065 12.3 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|386001731|ref|YP_005920030.1| - 0.0046 17.1 0.0 0.016 15.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|386001731|ref|YP_005920030.1| - 0.021 14.8 0.2 0.048 13.6 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|386001731|ref|YP_005920030.1| - 0.047 13.2 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|386001731|ref|YP_005920030.1| - 0.066 12.9 0.0 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF87 PF01935.12 gi|386001731|ref|YP_005920030.1| - 0.082 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF87 SMC_N PF02463.14 gi|386001731|ref|YP_005920030.1| - 0.14 11.4 0.0 1 8.5 0.0 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|386001731|ref|YP_005920030.1| - 0.18 11.7 0.0 0.62 9.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|386001732|ref|YP_005920031.1| - 7.5e-22 77.7 15.4 7.5e-22 77.7 10.7 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|386001732|ref|YP_005920031.1| - 0.016 14.5 0.3 0.061 12.7 0.2 2.0 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|386001733|ref|YP_005920032.1| - 3.2e-30 105.0 17.8 8.8e-30 103.5 12.3 1.8 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Methyltransf_18 PF12847.2 gi|386001734|ref|YP_005920033.1| - 4.3e-09 36.9 0.0 7.4e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386001734|ref|YP_005920033.1| - 9.7e-09 34.9 0.0 1.8e-07 30.8 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386001734|ref|YP_005920033.1| - 3.2e-07 30.7 0.0 2.6e-05 24.6 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001734|ref|YP_005920033.1| - 7e-05 22.6 0.0 0.00014 21.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain GidB PF02527.10 gi|386001734|ref|YP_005920033.1| - 0.00062 18.9 0.0 0.00091 18.4 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.7 gi|386001734|ref|YP_005920033.1| - 0.00071 20.0 0.0 0.0023 18.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|386001734|ref|YP_005920033.1| - 0.00088 18.9 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.1 gi|386001734|ref|YP_005920033.1| - 0.001 19.3 0.0 0.0018 18.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386001734|ref|YP_005920033.1| - 0.0025 16.9 0.0 0.0041 16.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|386001734|ref|YP_005920033.1| - 0.0057 15.7 0.0 0.0081 15.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|386001734|ref|YP_005920033.1| - 0.0076 15.6 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.6 gi|386001734|ref|YP_005920033.1| - 0.0087 14.7 0.0 0.013 14.2 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_26 PF13659.1 gi|386001734|ref|YP_005920033.1| - 0.011 15.7 0.0 0.016 15.1 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|386001734|ref|YP_005920033.1| - 0.025 14.1 0.0 5.2 6.5 0.0 2.2 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|386001734|ref|YP_005920033.1| - 0.045 12.8 0.0 0.065 12.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF938 PF06080.7 gi|386001734|ref|YP_005920033.1| - 0.046 13.2 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_4 PF02390.12 gi|386001734|ref|YP_005920033.1| - 0.18 10.8 0.0 0.29 10.1 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase SBP_bac_5 PF00496.17 gi|386001735|ref|YP_005920034.1| - 3.7e-67 226.7 1.5 4.9e-67 226.3 1.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle VKG_Carbox PF05090.9 gi|386001735|ref|YP_005920034.1| - 0.062 12.1 0.0 0.088 11.6 0.0 1.1 1 0 0 1 1 1 0 Vitamin K-dependent gamma-carboxylase TroA PF01297.12 gi|386001736|ref|YP_005920035.1| - 9.4e-08 31.6 0.1 1.5e-07 30.9 0.1 1.3 1 0 0 1 1 1 1 Periplasmic solute binding protein family VP9 PF09625.5 gi|386001736|ref|YP_005920035.1| - 0.14 12.0 0.0 0.34 10.7 0.0 1.6 1 0 0 1 1 1 0 VP9 protein ABC-3 PF00950.12 gi|386001737|ref|YP_005920036.1| - 1.6e-48 165.2 37.0 1.9e-48 165.0 25.6 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|386001737|ref|YP_005920036.1| - 0.00084 18.2 36.1 0.0016 17.3 25.0 1.6 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|386001738|ref|YP_005920037.1| - 4.8e-24 85.2 0.0 6.3e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001738|ref|YP_005920037.1| - 1.5e-09 38.2 0.0 0.00064 19.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|386001738|ref|YP_005920037.1| - 0.00012 21.8 0.6 0.011 15.6 0.4 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|386001738|ref|YP_005920037.1| - 0.002 18.4 0.1 0.0033 17.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|386001738|ref|YP_005920037.1| - 0.015 14.5 0.1 3.1 6.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|386001738|ref|YP_005920037.1| - 0.021 14.3 0.2 0.037 13.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|386001738|ref|YP_005920037.1| - 0.027 14.0 0.0 0.19 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|386001738|ref|YP_005920037.1| - 0.054 13.1 0.0 0.88 9.2 0.0 2.1 1 1 0 1 1 1 0 Archaeal ATPase ABC_ATPase PF09818.4 gi|386001738|ref|YP_005920037.1| - 0.055 12.0 0.1 0.4 9.2 0.1 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MutS_V PF00488.16 gi|386001738|ref|YP_005920037.1| - 0.076 12.3 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 MutS domain V Zeta_toxin PF06414.7 gi|386001738|ref|YP_005920037.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin T2SE PF00437.15 gi|386001738|ref|YP_005920037.1| - 0.13 11.0 0.1 0.21 10.4 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|386001738|ref|YP_005920037.1| - 0.14 12.1 0.1 0.67 9.9 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.1 gi|386001738|ref|YP_005920037.1| - 0.14 12.0 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF772 PF05598.6 gi|386001740|ref|YP_005920039.1| - 4.4e-18 64.9 0.0 8.4e-18 64.0 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|386001740|ref|YP_005920039.1| - 2.5e-16 59.8 0.1 8.2e-16 58.1 0.1 1.8 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|386001740|ref|YP_005920039.1| - 3.1e-05 23.9 0.0 6.1e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|386001740|ref|YP_005920039.1| - 0.00019 21.0 0.0 0.00036 20.1 0.0 1.5 1 1 0 1 1 1 1 DDE superfamily endonuclease CoA_binding_3 PF13727.1 gi|386001741|ref|YP_005920040.1| - 0.00041 20.2 0.5 0.00065 19.5 0.3 1.4 1 0 0 1 1 1 1 CoA-binding domain ATP_synt_H PF05493.8 gi|386001741|ref|YP_005920040.1| - 0.12 12.4 0.2 0.12 12.4 0.1 2.4 3 0 0 3 3 3 0 ATP synthase subunit H DUF4133 PF13571.1 gi|386001741|ref|YP_005920040.1| - 1.8 8.8 5.8 0.14 12.4 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4133) FlaC_arch PF05377.6 gi|386001742|ref|YP_005920041.1| - 0.032 14.1 0.3 0.041 13.7 0.2 1.1 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF134 PF02001.11 gi|386001743|ref|YP_005920042.1| - 3.3e-19 68.7 0.4 7.5e-19 67.5 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|386001743|ref|YP_005920042.1| - 0.011 15.1 1.0 0.017 14.6 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 UbiA PF01040.13 gi|386001745|ref|YP_005920044.1| - 8e-26 90.7 19.2 1.2e-25 90.2 13.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Glycos_transf_2 PF00535.21 gi|386001746|ref|YP_005920045.1| - 3.2e-16 59.4 0.0 8.4e-16 58.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|386001746|ref|YP_005920045.1| - 2e-11 44.1 0.6 3.3e-11 43.4 0.4 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|386001746|ref|YP_005920045.1| - 1e-06 28.6 0.2 1.4e-06 28.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|386001746|ref|YP_005920045.1| - 2e-05 23.8 0.0 5.3e-05 22.4 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|386001746|ref|YP_005920045.1| - 0.00028 20.2 0.1 0.00053 19.3 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 21 LysE PF01810.13 gi|386001747|ref|YP_005920046.1| - 3.7e-27 94.8 11.5 4.5e-27 94.5 8.0 1.0 1 0 0 1 1 1 1 LysE type translocator DUF95 PF01944.12 gi|386001748|ref|YP_005920047.1| - 2.1e-30 105.6 17.6 2.4e-30 105.4 12.2 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 tRNA-synt_2b PF00587.20 gi|386001749|ref|YP_005920048.1| - 5.5e-22 78.1 0.1 8.7e-22 77.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|386001749|ref|YP_005920048.1| - 1e-18 67.0 0.1 4.2e-18 65.0 0.0 2.1 2 0 0 2 2 2 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|386001749|ref|YP_005920048.1| - 2.1e-12 46.7 1.6 2.1e-12 46.7 1.1 2.2 3 0 0 3 3 3 1 Prolyl-tRNA synthetase, C-terminal ATP-grasp_3 PF02655.9 gi|386001750|ref|YP_005920049.1| - 4.9e-35 120.7 0.0 6.3e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|386001750|ref|YP_005920049.1| - 3.1e-08 33.5 0.0 2.5e-07 30.6 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|386001750|ref|YP_005920049.1| - 0.0063 15.3 0.0 0.039 12.7 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon YcfA PF07927.7 gi|386001751|ref|YP_005920050.1| - 4e-12 45.8 0.2 4e-12 45.8 0.1 1.5 1 1 1 2 2 2 1 YcfA-like protein UPF0150 PF03681.10 gi|386001752|ref|YP_005920051.1| - 4.2e-15 55.1 0.5 5.2e-15 54.8 0.3 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) ATP-grasp_3 PF02655.9 gi|386001753|ref|YP_005920052.1| - 0.011 15.6 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain RNA_pol_3_Rpc31 PF11705.3 gi|386001754|ref|YP_005920053.1| - 0.15 11.9 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Mad3_BUB1_I PF08311.7 gi|386001755|ref|YP_005920054.1| - 0.03 14.1 0.3 0.057 13.2 0.2 1.5 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 Z1 PF10593.4 gi|386001755|ref|YP_005920054.1| - 0.041 13.1 0.1 0.045 12.9 0.0 1.1 1 0 0 1 1 1 0 Z1 domain UPF0150 PF03681.10 gi|386001756|ref|YP_005920055.1| - 4.4e-20 71.0 0.1 6.4e-20 70.5 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|386001756|ref|YP_005920055.1| - 0.0074 16.3 0.0 0.0092 16.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3832) YcfA PF07927.7 gi|386001757|ref|YP_005920056.1| - 3.2e-15 55.7 0.0 3.9e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 YcfA-like protein DBP10CT PF08147.7 gi|386001757|ref|YP_005920056.1| - 0.069 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 DBP10CT (NUC160) domain YcfA PF07927.7 gi|386001759|ref|YP_005920058.1| - 1.2e-12 47.5 0.2 1.3e-12 47.3 0.1 1.1 1 0 0 1 1 1 1 YcfA-like protein Hjc PF01870.13 gi|386001759|ref|YP_005920058.1| - 0.11 12.1 0.1 0.15 11.6 0.1 1.4 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) UPF0150 PF03681.10 gi|386001760|ref|YP_005920059.1| - 1.2e-17 63.2 0.1 1.8e-17 62.6 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) UPF0150 PF03681.10 gi|386001761|ref|YP_005920060.1| - 2.5e-18 65.4 1.0 3.5e-18 64.9 0.7 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) YcfA PF07927.7 gi|386001762|ref|YP_005920061.1| - 5.8e-15 54.9 0.1 6.7e-15 54.7 0.1 1.1 1 0 0 1 1 1 1 YcfA-like protein Thr_synth_N PF14821.1 gi|386001764|ref|YP_005920063.1| - 5.9e-25 87.1 0.0 2.4e-24 85.1 0.0 2.1 2 0 0 2 2 2 1 Threonine synthase N terminus PALP PF00291.20 gi|386001764|ref|YP_005920063.1| - 1.4e-24 86.9 0.0 2.2e-24 86.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HAD PF12710.2 gi|386001764|ref|YP_005920063.1| - 0.0037 17.4 0.0 0.01 16.0 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF1699 PF08004.6 gi|386001766|ref|YP_005920065.1| - 8.4e-59 196.7 0.4 9.6e-59 196.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) IMS PF00817.15 gi|386001766|ref|YP_005920065.1| - 0.16 11.7 0.4 0.68 9.7 0.2 1.9 1 1 0 1 1 1 0 impB/mucB/samB family TIM PF00121.13 gi|386001767|ref|YP_005920066.1| - 6.1e-27 94.2 0.2 1.2e-24 86.7 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|386001767|ref|YP_005920066.1| - 0.00082 18.5 0.1 0.00082 18.5 0.1 2.1 2 1 1 3 3 3 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|386001767|ref|YP_005920066.1| - 0.0025 17.0 7.2 0.008 15.3 5.0 2.0 1 1 0 1 1 1 1 Nitronate monooxygenase Hydrolase_like PF13242.1 gi|386001767|ref|YP_005920066.1| - 0.0082 15.8 0.2 5.7 6.7 0.0 2.5 2 0 0 2 2 2 2 HAD-hyrolase-like FMN_dh PF01070.13 gi|386001767|ref|YP_005920066.1| - 0.02 13.7 2.1 0.084 11.7 0.4 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IGPS PF00218.16 gi|386001767|ref|YP_005920066.1| - 0.045 12.7 0.3 0.31 10.0 0.0 2.3 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase Acylphosphatase PF00708.13 gi|386001768|ref|YP_005920067.1| - 3.3e-24 84.8 0.1 3.5e-24 84.6 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase Fer4 PF00037.22 gi|386001769|ref|YP_005920068.1| - 5.6e-13 47.8 13.6 2.7e-07 29.9 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386001769|ref|YP_005920068.1| - 2e-11 44.0 22.6 2.5e-08 34.1 8.7 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386001769|ref|YP_005920068.1| - 1.3e-09 38.6 9.0 0.00018 22.1 0.3 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|386001769|ref|YP_005920068.1| - 2e-09 37.5 9.0 0.00017 21.8 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386001769|ref|YP_005920068.1| - 2.1e-09 36.8 11.2 0.00019 21.1 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386001769|ref|YP_005920068.1| - 8.3e-09 35.1 24.6 2.2e-06 27.3 9.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386001769|ref|YP_005920068.1| - 3.1e-08 33.5 23.7 2.1e-05 24.4 9.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386001769|ref|YP_005920068.1| - 7.2e-07 28.7 12.6 0.002 17.9 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|386001769|ref|YP_005920068.1| - 1.2e-06 28.3 11.5 0.00038 20.5 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|386001769|ref|YP_005920068.1| - 2.1e-05 24.8 12.8 0.00078 19.8 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386001769|ref|YP_005920068.1| - 3.3e-05 23.6 11.9 0.00017 21.3 8.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386001769|ref|YP_005920068.1| - 0.00017 21.8 20.0 0.0043 17.5 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386001769|ref|YP_005920068.1| - 0.00032 21.1 7.3 0.046 14.2 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|386001769|ref|YP_005920068.1| - 0.00071 19.8 13.8 0.011 16.1 1.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|386001769|ref|YP_005920068.1| - 0.0077 16.6 11.2 0.36 11.2 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain RMF PF04957.7 gi|386001769|ref|YP_005920068.1| - 0.17 11.5 0.3 4.3 7.1 0.0 2.0 2 0 0 2 2 2 0 Ribosome modulation factor Stig1 PF04885.8 gi|386001769|ref|YP_005920068.1| - 0.21 11.7 8.2 0.31 11.2 5.7 1.3 1 1 0 1 1 1 0 Stigma-specific protein, Stig1 Fer4_11 PF13247.1 gi|386001769|ref|YP_005920068.1| - 0.28 11.0 5.6 4.6 7.1 0.3 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-Paramyx-P PF13008.2 gi|386001769|ref|YP_005920068.1| - 0.6 9.3 8.1 1.9 7.7 0.8 2.2 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein zf-CXXC PF02008.15 gi|386001769|ref|YP_005920068.1| - 4.1 7.2 11.2 5.2 6.9 1.0 2.2 2 0 0 2 2 2 0 CXXC zinc finger domain Desulfoferrod_N PF06397.7 gi|386001769|ref|YP_005920068.1| - 8.2 5.9 11.5 0.89 8.9 2.7 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain FAD_binding_3 PF01494.14 gi|386001770|ref|YP_005920069.1| - 1.2e-17 64.0 1.2 1.2e-08 34.4 0.1 3.0 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|386001770|ref|YP_005920069.1| - 3.2e-15 55.8 1.6 2.5e-07 29.9 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|386001770|ref|YP_005920069.1| - 2.7e-09 36.6 5.2 5.3e-09 35.6 3.6 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|386001770|ref|YP_005920069.1| - 6.8e-09 35.0 1.0 2e-07 30.2 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.7 gi|386001770|ref|YP_005920069.1| - 1.1e-08 34.4 0.1 2.1e-06 26.9 0.1 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.9 gi|386001770|ref|YP_005920069.1| - 1.1e-07 30.7 0.3 1.7e-07 30.0 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|386001770|ref|YP_005920069.1| - 4.9e-07 29.6 0.0 3.5e-06 26.9 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|386001770|ref|YP_005920069.1| - 5.3e-06 25.3 0.0 0.016 13.8 0.1 2.2 2 1 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|386001770|ref|YP_005920069.1| - 2.9e-05 23.2 0.4 0.00025 20.2 0.1 2.3 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|386001770|ref|YP_005920069.1| - 0.00015 20.7 0.1 0.00024 20.0 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|386001770|ref|YP_005920069.1| - 0.0003 20.7 7.5 0.00071 19.5 5.2 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|386001770|ref|YP_005920069.1| - 0.00036 20.2 0.2 0.0059 16.2 0.1 2.6 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|386001770|ref|YP_005920069.1| - 0.00091 19.5 0.1 0.00091 19.5 0.1 2.4 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|386001770|ref|YP_005920069.1| - 0.012 15.9 0.1 0.03 14.6 0.0 1.9 1 1 0 1 1 1 0 XdhC Rossmann domain Pyr_redox_3 PF13738.1 gi|386001770|ref|YP_005920069.1| - 0.013 15.5 0.1 0.019 15.0 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|386001770|ref|YP_005920069.1| - 0.056 12.2 0.1 0.095 11.5 0.0 1.4 1 0 0 1 1 1 0 Squalene epoxidase N6_Mtase PF02384.11 gi|386001772|ref|YP_005920071.1| - 3.8e-42 144.4 0.0 7.5e-37 127.0 0.0 2.4 1 1 1 2 2 2 2 N-6 DNA Methylase HsdM_N PF12161.3 gi|386001772|ref|YP_005920071.1| - 8.9e-07 29.4 0.7 2.6e-06 27.8 0.0 2.1 2 0 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|386001772|ref|YP_005920071.1| - 3.9e-06 26.8 0.0 1.9e-05 24.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|386001772|ref|YP_005920071.1| - 6.3e-05 22.6 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|386001772|ref|YP_005920071.1| - 0.064 12.8 0.0 0.32 10.5 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain DUF1016 PF06250.6 gi|386001773|ref|YP_005920072.1| - 2.3e-119 398.1 0.4 2.7e-119 397.9 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1016) MFS_1 PF07690.11 gi|386001774|ref|YP_005920073.1| - 9.8e-38 129.7 48.7 9.8e-38 129.7 33.8 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|386001774|ref|YP_005920073.1| - 4.7e-09 35.3 25.8 7.1e-09 34.7 8.1 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter CoA_binding_3 PF13727.1 gi|386001774|ref|YP_005920073.1| - 2.7 7.7 10.3 0.13 12.0 0.4 2.7 3 0 0 3 3 3 0 CoA-binding domain SDH_sah PF01972.11 gi|386001777|ref|YP_005920076.1| - 3.2e-109 364.1 0.2 3.8e-109 363.8 0.2 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|386001777|ref|YP_005920076.1| - 1.2e-05 25.0 0.0 2.1e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Clp protease Peptidase_S49 PF01343.13 gi|386001777|ref|YP_005920076.1| - 0.031 14.0 0.0 0.08 12.7 0.0 1.6 1 0 0 1 1 1 0 Peptidase family S49 ECH PF00378.15 gi|386001777|ref|YP_005920076.1| - 0.065 12.3 0.0 0.11 11.6 0.0 1.4 1 1 0 1 1 1 0 Enoyl-CoA hydratase/isomerase family CoA_binding_3 PF13727.1 gi|386001777|ref|YP_005920076.1| - 0.26 11.1 2.2 0.22 11.3 0.5 1.6 2 0 0 2 2 2 0 CoA-binding domain OrfB_IS605 PF01385.14 gi|386001778|ref|YP_005920077.1| - 1.7e-41 142.1 0.2 3.2e-41 141.1 0.0 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|386001778|ref|YP_005920077.1| - 3.9e-23 80.8 0.1 8.1e-23 79.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|386001778|ref|YP_005920077.1| - 7.9e-18 63.5 3.2 1.7e-17 62.4 2.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|386001778|ref|YP_005920077.1| - 0.003 16.8 0.2 0.58 9.5 0.0 2.3 1 1 1 2 2 2 2 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|386001778|ref|YP_005920077.1| - 0.003 17.0 0.3 0.0049 16.3 0.2 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|386001778|ref|YP_005920077.1| - 0.0053 16.5 0.4 0.0093 15.7 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.10 gi|386001778|ref|YP_005920077.1| - 0.0058 16.0 1.5 0.065 12.6 0.1 3.0 3 0 0 3 3 3 1 RecR protein zinc_ribbon_2 PF13240.1 gi|386001778|ref|YP_005920077.1| - 0.069 12.6 0.6 5 6.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.22 gi|386001778|ref|YP_005920077.1| - 0.79 9.1 3.3 1.5 8.2 0.3 2.6 1 1 1 2 2 2 0 GATA zinc finger AhpC-TSA PF00578.16 gi|386001779|ref|YP_005920078.1| - 7.8e-39 132.1 0.0 9.2e-39 131.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|386001779|ref|YP_005920078.1| - 4.4e-18 65.2 0.0 5.5e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin VWA_2 PF13519.1 gi|386001780|ref|YP_005920079.1| - 1.2e-18 67.7 0.0 1.7e-18 67.3 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|386001780|ref|YP_005920079.1| - 2.5e-10 40.3 0.0 1.9e-09 37.5 0.0 2.1 1 1 0 1 1 1 1 von Willebrand factor type A domain Integrin_beta PF00362.13 gi|386001780|ref|YP_005920079.1| - 0.00015 20.7 0.0 0.00077 18.4 0.0 1.8 1 1 0 1 1 1 1 Integrin, beta chain Pribosyltran PF00156.22 gi|386001781|ref|YP_005920080.1| - 4.5e-22 78.0 2.3 6e-22 77.6 1.6 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|386001781|ref|YP_005920080.1| - 5.7e-06 25.6 0.2 9.2e-06 25.0 0.1 1.3 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|386001781|ref|YP_005920080.1| - 0.00057 19.2 0.0 0.00079 18.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase DUF357 PF04010.8 gi|386001782|ref|YP_005920081.1| - 7.3e-17 60.8 0.0 8.8e-17 60.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) STT3 PF02516.9 gi|386001783|ref|YP_005920082.1| - 2.1e-29 102.8 18.0 4.2e-29 101.8 12.5 1.5 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|386001783|ref|YP_005920082.1| - 2.8e-08 33.8 12.1 2.8e-08 33.8 8.4 2.9 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase OrfB_IS605 PF01385.14 gi|386001784|ref|YP_005920083.1| - 7.2e-41 140.0 0.0 1.2e-40 139.3 0.0 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|386001784|ref|YP_005920083.1| - 2.3e-24 84.8 0.1 5.3e-24 83.6 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|386001784|ref|YP_005920083.1| - 5.2e-19 67.2 1.4 1e-18 66.3 1.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|386001784|ref|YP_005920083.1| - 0.0043 16.3 0.3 0.77 9.1 0.0 2.3 1 1 1 2 2 2 2 TFIIB zinc-binding DZR PF12773.2 gi|386001784|ref|YP_005920083.1| - 0.015 15.0 0.4 0.03 14.1 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|386001784|ref|YP_005920083.1| - 0.026 14.4 0.2 0.08 12.8 0.1 1.8 1 0 0 1 1 1 0 FYVE zinc finger zf-NADH-PPase PF09297.6 gi|386001784|ref|YP_005920083.1| - 0.06 12.8 0.4 0.15 11.6 0.3 1.7 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain RecR PF02132.10 gi|386001784|ref|YP_005920083.1| - 0.17 11.3 0.2 0.17 11.3 0.1 3.0 3 0 0 3 3 3 0 RecR protein Glycos_transf_2 PF00535.21 gi|386001785|ref|YP_005920084.1| - 7.1e-21 74.6 0.0 1.1e-20 74.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|386001785|ref|YP_005920084.1| - 4.9e-07 29.7 0.0 7.2e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|386001785|ref|YP_005920084.1| - 0.0083 15.4 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Borrelia_P13 PF05628.7 gi|386001785|ref|YP_005920084.1| - 0.02 14.7 4.3 0.22 11.3 1.4 2.5 2 0 0 2 2 2 0 Borrelia membrane protein P13 DUF2910 PF11139.3 gi|386001785|ref|YP_005920084.1| - 0.13 11.3 9.4 11 5.0 6.5 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2910) Glycos_transf_1 PF00534.15 gi|386001786|ref|YP_005920085.1| - 2.1e-34 118.3 0.0 3.1e-34 117.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|386001786|ref|YP_005920085.1| - 8.4e-23 81.2 3.6 1.5e-22 80.4 2.5 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|386001786|ref|YP_005920085.1| - 4.9e-21 75.2 0.0 7.2e-21 74.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|386001786|ref|YP_005920085.1| - 2.3e-20 73.1 0.2 7.7e-20 71.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|386001786|ref|YP_005920085.1| - 1.5e-06 28.3 0.0 2.5e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|386001787|ref|YP_005920086.1| - 1.4e-38 132.0 0.0 2.5e-38 131.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|386001787|ref|YP_005920086.1| - 2.5e-26 92.4 0.1 9.5e-26 90.5 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|386001787|ref|YP_005920086.1| - 3.4e-18 66.2 0.6 1e-17 64.7 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|386001787|ref|YP_005920086.1| - 4.8e-15 55.7 0.0 8.6e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|386001787|ref|YP_005920086.1| - 6.2e-14 52.0 0.0 1.5e-13 50.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|386001787|ref|YP_005920086.1| - 0.00024 20.9 0.0 0.00042 20.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|386001787|ref|YP_005920086.1| - 0.017 14.5 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 Starch synthase catalytic domain Epimerase PF01370.16 gi|386001788|ref|YP_005920087.1| - 4.4e-53 180.1 0.0 8.4e-53 179.2 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|386001788|ref|YP_005920087.1| - 2.3e-09 36.5 0.0 9.9e-07 27.9 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|386001788|ref|YP_005920087.1| - 2.5e-09 36.2 0.0 3e-08 32.7 0.0 2.0 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|386001788|ref|YP_005920087.1| - 2.5e-08 33.2 0.0 3.8e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|386001788|ref|YP_005920087.1| - 1.8e-07 30.3 0.0 3.5e-07 29.4 0.0 1.5 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|386001788|ref|YP_005920087.1| - 3.7e-06 26.9 0.0 5.7e-05 23.0 0.0 2.3 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|386001788|ref|YP_005920087.1| - 0.00077 19.1 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|386001788|ref|YP_005920087.1| - 0.0046 16.9 0.0 0.0069 16.4 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|386001788|ref|YP_005920087.1| - 0.04 13.1 0.0 0.057 12.6 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family dTDP_sugar_isom PF00908.12 gi|386001789|ref|YP_005920088.1| - 1.5e-65 219.7 0.0 1.7e-65 219.6 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase NTP_transferase PF00483.18 gi|386001790|ref|YP_005920089.1| - 4e-54 183.5 0.0 5e-54 183.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|386001790|ref|YP_005920089.1| - 5.5e-08 33.0 0.0 7.8e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|386001790|ref|YP_005920089.1| - 2.4e-05 23.5 10.5 0.18 11.3 1.3 5.3 4 1 2 6 6 6 3 Bacterial transferase hexapeptide (six repeats) CTP_transf_3 PF02348.14 gi|386001790|ref|YP_005920089.1| - 0.0071 15.9 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Fucokinase PF07959.7 gi|386001790|ref|YP_005920089.1| - 0.014 14.0 0.1 0.019 13.5 0.1 1.1 1 0 0 1 1 1 0 L-fucokinase Hexapep_2 PF14602.1 gi|386001790|ref|YP_005920089.1| - 0.041 13.4 0.5 0.041 13.4 0.4 4.6 5 0 0 5 5 5 0 Hexapeptide repeat of succinyl-transferase Beta_helix PF13229.1 gi|386001790|ref|YP_005920089.1| - 0.079 12.7 1.9 0.22 11.2 1.3 1.6 1 1 0 1 1 1 0 Right handed beta helix region Epimerase PF01370.16 gi|386001791|ref|YP_005920090.1| - 5e-66 222.5 0.0 6.2e-66 222.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|386001791|ref|YP_005920090.1| - 7e-20 71.0 0.0 9.2e-20 70.6 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|386001791|ref|YP_005920090.1| - 1.8e-15 56.5 0.0 1.6e-14 53.4 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|386001791|ref|YP_005920090.1| - 2.1e-15 56.1 0.0 2.8e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|386001791|ref|YP_005920090.1| - 7.7e-13 47.9 0.0 3.5e-12 45.8 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|386001791|ref|YP_005920090.1| - 1.9e-06 27.8 0.7 1.7e-05 24.7 0.5 2.2 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|386001791|ref|YP_005920090.1| - 3.3e-06 27.2 0.0 4.8e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|386001791|ref|YP_005920090.1| - 0.0046 16.2 0.0 0.0071 15.6 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|386001791|ref|YP_005920090.1| - 0.0082 15.8 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 KR domain TrkA_N PF02254.13 gi|386001791|ref|YP_005920090.1| - 0.0084 16.1 0.0 0.024 14.6 0.0 1.8 1 1 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|386001791|ref|YP_005920090.1| - 0.012 14.5 0.0 0.018 14.0 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Epimerase_Csub PF13950.1 gi|386001791|ref|YP_005920090.1| - 0.016 15.1 0.0 0.066 13.1 0.0 1.9 2 0 0 2 2 2 0 UDP-glucose 4-epimerase C-term subunit RmlD_sub_bind PF04321.12 gi|386001792|ref|YP_005920091.1| - 2.7e-70 236.5 0.0 3.3e-70 236.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|386001792|ref|YP_005920091.1| - 1.8e-23 83.2 0.0 3.3e-23 82.3 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|386001792|ref|YP_005920091.1| - 1.5e-12 47.0 1.0 2.3e-11 43.1 0.0 2.4 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|386001792|ref|YP_005920091.1| - 2.4e-11 43.0 0.1 1.6e-09 37.0 0.0 2.4 2 1 0 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.14 gi|386001792|ref|YP_005920091.1| - 3.9e-10 38.8 0.0 6.6e-10 38.1 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|386001792|ref|YP_005920091.1| - 3.6e-07 30.3 0.1 6.3e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|386001792|ref|YP_005920091.1| - 0.0024 17.8 4.6 0.4 10.5 2.1 3.1 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|386001792|ref|YP_005920091.1| - 0.057 12.6 0.0 0.087 12.0 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family KR PF08659.5 gi|386001792|ref|YP_005920091.1| - 0.057 13.0 1.7 8.7 5.9 0.8 2.7 2 1 0 2 2 2 0 KR domain DFP PF04127.10 gi|386001792|ref|YP_005920091.1| - 0.12 11.9 0.0 0.83 9.2 0.0 2.2 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein Glycos_transf_1 PF00534.15 gi|386001793|ref|YP_005920092.1| - 1.4e-31 109.1 0.0 2.1e-31 108.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|386001793|ref|YP_005920092.1| - 1.9e-14 53.9 0.0 3.4e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|386001793|ref|YP_005920092.1| - 0.00077 19.2 3.2 0.01 15.5 2.2 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|386001793|ref|YP_005920092.1| - 0.0014 18.8 0.1 0.0028 17.8 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|386001793|ref|YP_005920092.1| - 0.021 15.1 0.1 0.08 13.2 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 Epimerase_2 PF02350.14 gi|386001793|ref|YP_005920092.1| - 0.084 11.6 0.0 0.15 10.7 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Epimerase PF01370.16 gi|386001794|ref|YP_005920093.1| - 6.7e-40 136.9 0.0 8.5e-40 136.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|386001794|ref|YP_005920093.1| - 3.7e-08 33.5 0.0 6.2e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|386001794|ref|YP_005920093.1| - 2.1e-07 29.9 0.0 7.5e-07 28.1 0.0 1.8 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|386001794|ref|YP_005920093.1| - 2.1e-07 30.1 0.1 8.1e-07 28.2 0.1 2.0 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|386001794|ref|YP_005920093.1| - 3.1e-07 29.5 0.3 0.017 14.0 0.1 2.4 1 1 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|386001794|ref|YP_005920093.1| - 0.00044 20.2 0.1 0.002 18.0 0.1 2.0 2 0 0 2 2 2 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|386001794|ref|YP_005920093.1| - 0.027 14.4 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit DAO PF01266.19 gi|386001794|ref|YP_005920093.1| - 0.034 13.0 0.0 0.048 12.5 0.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Polysacc_synt_2 PF02719.10 gi|386001794|ref|YP_005920093.1| - 0.05 12.4 0.1 0.099 11.5 0.1 1.7 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein KR PF08659.5 gi|386001794|ref|YP_005920093.1| - 0.05 13.2 0.1 0.17 11.5 0.0 1.8 2 0 0 2 2 2 0 KR domain ABC2_membrane PF01061.19 gi|386001795|ref|YP_005920094.1| - 4.6e-24 84.7 25.6 4.6e-24 84.7 17.8 1.8 1 1 1 2 2 2 1 ABC-2 type transporter Wzt_C PF14524.1 gi|386001796|ref|YP_005920095.1| - 1.2e-28 99.6 0.0 2.4e-28 98.6 0.0 1.6 1 0 0 1 1 1 1 Wzt C-terminal domain ABC_tran PF00005.22 gi|386001796|ref|YP_005920095.1| - 4.4e-23 82.0 0.0 1.5e-22 80.3 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001796|ref|YP_005920095.1| - 2.5e-13 50.6 1.6 2.9e-05 24.1 0.0 3.1 2 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|386001796|ref|YP_005920095.1| - 3e-06 26.6 0.0 6.3e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|386001796|ref|YP_005920095.1| - 0.00032 20.4 0.2 0.21 11.2 0.1 2.3 2 0 0 2 2 2 2 NTPase AAA_23 PF13476.1 gi|386001796|ref|YP_005920095.1| - 0.00048 20.5 0.0 0.001 19.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|386001796|ref|YP_005920095.1| - 0.00054 19.4 0.3 0.14 11.5 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|386001796|ref|YP_005920095.1| - 0.0011 18.9 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|386001796|ref|YP_005920095.1| - 0.0018 17.9 0.3 0.0048 16.5 0.1 1.8 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|386001796|ref|YP_005920095.1| - 0.014 14.1 0.1 0.021 13.6 0.1 1.2 1 0 0 1 1 1 0 ArgK protein AAA_22 PF13401.1 gi|386001796|ref|YP_005920095.1| - 0.019 15.0 0.0 0.059 13.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|386001796|ref|YP_005920095.1| - 0.02 14.1 0.1 0.05 12.8 0.0 1.6 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NACHT PF05729.7 gi|386001796|ref|YP_005920095.1| - 0.022 14.3 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain T2SE PF00437.15 gi|386001796|ref|YP_005920095.1| - 0.027 13.3 0.1 0.64 8.8 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|386001796|ref|YP_005920095.1| - 0.028 13.9 0.1 0.081 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|386001796|ref|YP_005920095.1| - 0.03 14.5 0.0 0.23 11.6 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|386001796|ref|YP_005920095.1| - 0.067 12.2 0.0 0.25 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|386001796|ref|YP_005920095.1| - 0.067 14.0 0.2 0.23 12.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|386001796|ref|YP_005920095.1| - 0.076 13.5 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_18 PF13238.1 gi|386001796|ref|YP_005920095.1| - 0.094 13.0 0.1 0.25 11.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|386001796|ref|YP_005920095.1| - 0.12 11.6 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|386001796|ref|YP_005920095.1| - 0.13 11.7 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|386001796|ref|YP_005920095.1| - 0.18 10.5 0.0 0.27 10.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Methyltransf_11 PF08241.7 gi|386001797|ref|YP_005920096.1| - 3e-09 37.2 0.0 9.9e-09 35.5 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386001797|ref|YP_005920096.1| - 6.8e-09 35.4 1.2 7.6e-08 32.0 0.0 2.8 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001797|ref|YP_005920096.1| - 4.3e-08 33.0 0.0 9.6e-08 31.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386001797|ref|YP_005920096.1| - 1.2e-07 32.3 0.2 4.8e-06 27.1 0.0 3.3 4 1 0 4 4 4 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386001797|ref|YP_005920096.1| - 4.3e-06 27.0 0.0 1.2e-05 25.5 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386001797|ref|YP_005920096.1| - 9e-06 26.0 1.1 0.00025 21.4 0.0 3.1 3 0 0 3 3 2 1 Methyltransferase domain Mitofilin PF09731.4 gi|386001797|ref|YP_005920096.1| - 0.00025 19.8 9.3 0.00036 19.3 6.4 1.2 1 0 0 1 1 1 1 Mitochondrial inner membrane protein Apolipoprotein PF01442.13 gi|386001797|ref|YP_005920096.1| - 0.00049 19.6 6.5 0.0027 17.2 4.5 2.2 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.7 gi|386001797|ref|YP_005920096.1| - 0.0017 18.1 5.4 1 9.1 0.4 3.2 2 1 0 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus KAP_NTPase PF07693.9 gi|386001797|ref|YP_005920096.1| - 0.015 14.2 0.3 0.032 13.2 0.2 1.6 1 1 0 1 1 1 0 KAP family P-loop domain DUF1640 PF07798.6 gi|386001797|ref|YP_005920096.1| - 0.018 15.0 12.4 0.74 9.8 6.2 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1640) Methyltransf_32 PF13679.1 gi|386001797|ref|YP_005920096.1| - 0.033 13.8 0.9 0.1 12.3 0.0 2.2 3 1 0 3 3 2 0 Methyltransferase domain ATP-synt_B PF00430.13 gi|386001797|ref|YP_005920096.1| - 0.046 13.5 11.7 0.37 10.5 0.7 3.0 2 1 1 3 3 3 0 ATP synthase B/B' CF(0) UPF0146 PF03686.8 gi|386001797|ref|YP_005920096.1| - 0.055 13.2 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) DUF883 PF05957.8 gi|386001797|ref|YP_005920096.1| - 0.12 12.8 5.6 10 6.6 0.2 3.5 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) DLD PF14878.1 gi|386001797|ref|YP_005920096.1| - 0.12 12.4 5.0 11 6.2 0.3 3.8 2 1 3 5 5 4 0 Death-like domain of SPT6 Transcrip_act PF04949.8 gi|386001797|ref|YP_005920096.1| - 0.23 11.0 14.4 3.6 7.1 1.4 3.8 2 1 2 4 4 4 0 Transcriptional activator Phage_Mu_Gam PF07352.7 gi|386001797|ref|YP_005920096.1| - 0.36 10.3 4.8 4 6.9 0.1 3.0 1 1 2 3 3 3 0 Bacteriophage Mu Gam like protein Prominin PF05478.6 gi|386001797|ref|YP_005920096.1| - 1.5 6.2 6.0 0.78 7.1 0.4 2.1 1 1 0 2 2 2 0 Prominin Glycos_transf_1 PF00534.15 gi|386001798|ref|YP_005920097.1| - 2.6e-42 144.1 0.7 7.6e-27 93.8 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|386001798|ref|YP_005920097.1| - 2.2e-25 89.3 0.0 2.9e-13 50.1 0.0 2.5 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|386001798|ref|YP_005920097.1| - 1.3e-09 38.2 0.0 2.6e-05 24.4 0.0 2.6 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|386001798|ref|YP_005920097.1| - 6.5e-07 29.2 0.0 1.5e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_20 PF00982.16 gi|386001798|ref|YP_005920097.1| - 0.0023 16.4 0.3 0.028 12.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyltransferase family 20 EamA PF00892.15 gi|386001799|ref|YP_005920098.1| - 3.9e-07 30.1 3.8 4.3e-07 30.0 2.7 1.0 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|386001799|ref|YP_005920098.1| - 0.0014 18.8 2.5 0.0015 18.7 1.7 1.0 1 0 0 1 1 1 1 Multidrug resistance efflux transporter Nuc_sug_transp PF04142.10 gi|386001799|ref|YP_005920098.1| - 0.0043 16.2 0.6 0.0043 16.2 0.4 1.0 1 0 0 1 1 1 1 Nucleotide-sugar transporter UPF0546 PF10639.4 gi|386001799|ref|YP_005920098.1| - 0.0049 16.6 0.5 0.0054 16.5 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0546 TPT PF03151.11 gi|386001799|ref|YP_005920098.1| - 0.016 14.8 1.7 0.017 14.7 1.1 1.0 1 0 0 1 1 1 0 Triose-phosphate Transporter family Mg_trans_NIPA PF05653.9 gi|386001799|ref|YP_005920098.1| - 0.019 13.9 0.8 0.019 13.9 0.6 1.0 1 0 0 1 1 1 0 Magnesium transporter NIPA Multi_Drug_Res PF00893.14 gi|386001799|ref|YP_005920098.1| - 0.064 13.7 0.2 0.084 13.3 0.2 1.2 1 0 0 1 1 1 0 Small Multidrug Resistance protein UAA PF08449.6 gi|386001799|ref|YP_005920098.1| - 0.12 11.2 1.6 0.13 11.1 1.1 1.0 1 0 0 1 1 1 0 UAA transporter family DUF2065 PF09838.4 gi|386001799|ref|YP_005920098.1| - 0.18 11.5 2.1 0.19 11.4 0.9 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2065) Methyltransf_11 PF08241.7 gi|386001800|ref|YP_005920099.1| - 2.5e-23 82.4 0.0 4.6e-23 81.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001800|ref|YP_005920099.1| - 5.5e-17 61.9 0.0 7.1e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386001800|ref|YP_005920099.1| - 1.4e-15 57.2 0.0 1.8e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386001800|ref|YP_005920099.1| - 2.9e-12 46.9 0.0 5.7e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386001800|ref|YP_005920099.1| - 3.8e-11 43.2 0.0 9.7e-11 41.9 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386001800|ref|YP_005920099.1| - 6.9e-10 38.4 0.0 9.5e-10 37.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|386001800|ref|YP_005920099.1| - 7.1e-10 39.4 0.1 1.3e-09 38.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|386001800|ref|YP_005920099.1| - 8.7e-08 32.0 0.0 2e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|386001800|ref|YP_005920099.1| - 0.00012 22.0 0.0 0.00061 19.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|386001800|ref|YP_005920099.1| - 0.0015 16.9 0.0 0.0043 15.4 0.0 1.6 1 1 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase DREV PF05219.7 gi|386001800|ref|YP_005920099.1| - 0.0017 17.2 0.0 0.0023 16.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase CMAS PF02353.15 gi|386001800|ref|YP_005920099.1| - 0.012 14.7 0.0 0.021 13.9 0.0 1.4 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|386001800|ref|YP_005920099.1| - 0.013 14.9 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.9 gi|386001800|ref|YP_005920099.1| - 0.013 14.9 0.0 0.03 13.7 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain TPMT PF05724.6 gi|386001800|ref|YP_005920099.1| - 0.037 13.4 0.0 0.048 13.0 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) NNMT_PNMT_TEMT PF01234.12 gi|386001800|ref|YP_005920099.1| - 0.058 12.3 0.0 0.088 11.7 0.0 1.3 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family Glycos_transf_2 PF00535.21 gi|386001802|ref|YP_005920101.1| - 1.3e-24 86.8 0.2 1.6e-24 86.4 0.2 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|386001802|ref|YP_005920101.1| - 1.5e-08 34.7 0.0 2e-08 34.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|386001802|ref|YP_005920101.1| - 0.00011 21.4 0.1 0.00019 20.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Peptidase_C1 PF00112.18 gi|386001803|ref|YP_005920102.1| - 8e-45 153.3 5.4 1.2e-44 152.8 3.7 1.2 1 0 0 1 1 1 1 Papain family cysteine protease DUF1964 PF09244.5 gi|386001803|ref|YP_005920102.1| - 0.014 15.7 1.2 38 4.7 0.0 4.2 4 0 0 4 4 4 0 Domain of unknown function (DUF1964) ABC_transp_aux PF09822.4 gi|386001803|ref|YP_005920102.1| - 0.024 14.0 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system VCBS PF13517.1 gi|386001803|ref|YP_005920102.1| - 4.4 7.7 41.7 5.8 7.3 10.6 6.3 1 1 4 5 5 5 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Peptidase_C1 PF00112.18 gi|386001804|ref|YP_005920103.1| - 2.3e-43 148.6 1.7 3.6e-43 148.0 1.2 1.2 1 0 0 1 1 1 1 Papain family cysteine protease ABC_transp_aux PF09822.4 gi|386001804|ref|YP_005920103.1| - 0.00079 18.9 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system ThuA PF06283.6 gi|386001804|ref|YP_005920103.1| - 0.18 11.5 0.0 0.37 10.4 0.0 1.4 1 0 0 1 1 1 0 Trehalose utilisation Peptidase_C25 PF01364.13 gi|386001805|ref|YP_005920104.1| - 1.2e-50 172.5 0.1 1.7e-50 172.1 0.1 1.1 1 0 0 1 1 1 1 Peptidase family C25 Propeptide_C25 PF08126.6 gi|386001805|ref|YP_005920104.1| - 4.6e-18 64.9 0.0 8.4e-18 64.0 0.0 1.3 1 0 0 1 1 1 1 Propeptide_C25 PKD PF00801.15 gi|386001805|ref|YP_005920104.1| - 0.0092 15.7 1.0 0.0092 15.7 0.7 2.9 3 0 0 3 3 3 1 PKD domain PALP PF00291.20 gi|386001806|ref|YP_005920105.1| - 3.3e-27 95.5 1.3 4.3e-27 95.1 0.9 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.11 gi|386001806|ref|YP_005920105.1| - 0.028 13.9 0.3 0.57 9.7 0.0 2.2 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain ACP_syn_III_C PF08541.5 gi|386001806|ref|YP_005920105.1| - 0.095 12.7 0.2 0.26 11.3 0.1 1.7 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABC_tran PF00005.22 gi|386001807|ref|YP_005920106.1| - 4.2e-13 49.7 0.0 7e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001807|ref|YP_005920106.1| - 5.4e-05 23.3 0.1 0.24 11.3 0.0 2.4 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|386001807|ref|YP_005920106.1| - 0.00023 20.6 0.0 0.0014 18.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|386001807|ref|YP_005920106.1| - 0.00045 19.5 0.1 0.15 11.3 0.0 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|386001807|ref|YP_005920106.1| - 0.00046 20.2 0.0 0.00069 19.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|386001807|ref|YP_005920106.1| - 0.00059 19.9 0.1 0.0037 17.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|386001807|ref|YP_005920106.1| - 0.0026 17.5 0.3 0.026 14.2 0.2 2.0 1 1 0 1 1 1 1 Archaeal ATPase AAA_29 PF13555.1 gi|386001807|ref|YP_005920106.1| - 0.0038 16.7 0.0 0.011 15.2 0.0 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|386001807|ref|YP_005920106.1| - 0.0081 15.8 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|386001807|ref|YP_005920106.1| - 0.014 15.7 0.0 0.021 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.4 gi|386001807|ref|YP_005920106.1| - 0.021 13.3 0.0 0.032 12.7 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein Fer4_NifH PF00142.13 gi|386001807|ref|YP_005920106.1| - 0.023 13.9 0.1 0.12 11.5 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_17 PF13207.1 gi|386001807|ref|YP_005920106.1| - 0.046 14.5 2.1 0.13 13.1 0.8 2.1 3 1 0 3 3 2 0 AAA domain MMR_HSR1 PF01926.18 gi|386001807|ref|YP_005920106.1| - 0.048 13.6 0.0 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|386001807|ref|YP_005920106.1| - 0.052 13.4 0.0 1 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|386001807|ref|YP_005920106.1| - 0.053 12.7 0.0 0.082 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KAP_NTPase PF07693.9 gi|386001807|ref|YP_005920106.1| - 0.081 11.9 0.0 0.13 11.1 0.0 1.5 1 1 0 1 1 1 0 KAP family P-loop domain Zeta_toxin PF06414.7 gi|386001807|ref|YP_005920106.1| - 0.088 11.8 0.0 0.19 10.7 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin Miro PF08477.8 gi|386001807|ref|YP_005920106.1| - 0.09 13.2 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein MCM PF00493.18 gi|386001807|ref|YP_005920106.1| - 0.12 11.1 0.0 4.8 5.8 0.0 2.1 2 0 0 2 2 2 0 MCM2/3/5 family cobW PF02492.14 gi|386001808|ref|YP_005920107.1| - 2.1e-15 56.5 0.0 2.7e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|386001808|ref|YP_005920107.1| - 8.7e-05 22.2 0.0 0.00023 20.8 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain ArgK PF03308.11 gi|386001808|ref|YP_005920107.1| - 0.00027 19.7 0.1 0.062 12.0 0.1 2.2 2 0 0 2 2 2 2 ArgK protein MobB PF03205.9 gi|386001808|ref|YP_005920107.1| - 0.00038 20.1 0.0 0.00076 19.2 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|386001808|ref|YP_005920107.1| - 0.0004 19.5 0.0 0.00062 18.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|386001808|ref|YP_005920107.1| - 0.00058 20.1 0.0 0.001 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|386001808|ref|YP_005920107.1| - 0.00059 19.3 0.0 0.001 18.5 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|386001808|ref|YP_005920107.1| - 0.0014 18.6 0.0 0.0054 16.7 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|386001808|ref|YP_005920107.1| - 0.0039 17.9 0.0 0.005 17.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|386001808|ref|YP_005920107.1| - 0.012 14.5 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.5 gi|386001808|ref|YP_005920107.1| - 0.018 14.2 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 LpxK PF02606.9 gi|386001808|ref|YP_005920107.1| - 0.019 13.9 0.3 0.038 12.9 0.1 1.5 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_22 PF13401.1 gi|386001808|ref|YP_005920107.1| - 0.023 14.8 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|386001808|ref|YP_005920107.1| - 0.028 13.8 0.0 0.058 12.7 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Viral_helicase1 PF01443.13 gi|386001808|ref|YP_005920107.1| - 0.03 13.8 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_33 PF13671.1 gi|386001808|ref|YP_005920107.1| - 0.041 13.7 0.0 0.097 12.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|386001808|ref|YP_005920107.1| - 0.044 13.3 0.0 0.17 11.4 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.7 gi|386001808|ref|YP_005920107.1| - 0.074 12.7 0.1 0.65 9.6 0.0 2.1 2 0 0 2 2 2 0 NACHT domain KAP_NTPase PF07693.9 gi|386001808|ref|YP_005920107.1| - 0.084 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_30 PF13604.1 gi|386001808|ref|YP_005920107.1| - 0.11 12.0 0.2 0.28 10.7 0.1 1.7 2 0 0 2 2 1 0 AAA domain AAA_10 PF12846.2 gi|386001808|ref|YP_005920107.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_24 PF13479.1 gi|386001808|ref|YP_005920107.1| - 0.12 11.9 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|386001808|ref|YP_005920107.1| - 0.15 12.5 0.0 0.86 10.1 0.0 2.1 2 0 0 2 2 2 0 Miro-like protein Zot PF05707.7 gi|386001808|ref|YP_005920107.1| - 0.17 11.3 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) FeS PF04060.8 gi|386001809|ref|YP_005920108.1| - 2e-12 46.4 0.7 2e-12 46.4 0.5 2.0 2 0 0 2 2 2 1 Putative Fe-S cluster TPP_enzyme_N PF02776.13 gi|386001811|ref|YP_005920110.1| - 4e-12 45.9 0.2 6.8e-12 45.2 0.1 1.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PMC2NT PF08066.7 gi|386001812|ref|YP_005920111.1| - 0.018 15.3 0.0 0.067 13.4 0.0 2.1 2 1 0 2 2 2 0 PMC2NT (NUC016) domain TPP_enzyme_C PF02775.16 gi|386001813|ref|YP_005920112.1| - 9.3e-20 70.7 0.0 1.6e-19 69.9 0.0 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NosD PF05048.8 gi|386001814|ref|YP_005920113.1| - 5.1e-145 480.7 216.4 1.2e-22 80.2 14.5 10.8 1 1 9 10 10 10 10 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|386001814|ref|YP_005920113.1| - 1.5e-116 385.4 226.1 6.7e-18 64.9 10.5 10.1 5 3 4 10 10 10 10 Right handed beta helix region Peptidase_C39_2 PF13529.1 gi|386001815|ref|YP_005920114.1| - 0.013 15.8 0.1 0.025 14.9 0.1 1.5 1 0 0 1 1 1 0 Peptidase_C39 like family PP1_inhibitor PF05361.7 gi|386001815|ref|YP_005920114.1| - 0.093 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 PKC-activated protein phosphatase-1 inhibitor Peptidase_C39_2 PF13529.1 gi|386001816|ref|YP_005920115.1| - 0.012 15.9 0.1 0.02 15.2 0.0 1.4 1 0 0 1 1 1 0 Peptidase_C39 like family Peptidase_C1 PF00112.18 gi|386001816|ref|YP_005920115.1| - 0.022 14.6 1.0 9 6.1 1.3 2.3 1 1 1 2 2 2 0 Papain family cysteine protease NosD PF05048.8 gi|386001817|ref|YP_005920116.1| - 1.7e-65 220.4 21.4 1.2e-35 122.8 8.6 2.5 2 0 0 2 2 2 2 Periplasmic copper-binding protein (NosD) DUF11 PF01345.13 gi|386001817|ref|YP_005920116.1| - 3.2e-24 84.7 2.4 9.6e-07 28.7 0.3 4.6 4 0 0 4 4 4 3 Domain of unknown function DUF11 Beta_helix PF13229.1 gi|386001817|ref|YP_005920116.1| - 2.1e-16 60.0 24.9 2.6e-08 33.7 4.3 2.7 2 0 0 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|386001817|ref|YP_005920116.1| - 1.6e-07 30.7 12.8 0.0002 20.6 0.9 3.0 2 1 0 2 2 2 2 Protein of unknown function (DUF1565) Chlam_OMP6 PF03504.8 gi|386001817|ref|YP_005920116.1| - 0.061 13.5 0.0 6.1 7.1 0.0 2.7 2 0 0 2 2 2 0 Chlamydia cysteine-rich outer membrane protein 6 DUF39 PF01837.11 gi|386001818|ref|YP_005920117.1| - 1.6e-72 244.0 0.0 1.8e-72 243.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_7 PF12838.2 gi|386001818|ref|YP_005920117.1| - 7.8e-06 26.1 5.8 1.8e-05 24.9 4.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386001818|ref|YP_005920117.1| - 2e-05 24.2 10.3 0.00031 20.4 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386001818|ref|YP_005920117.1| - 4.9e-05 23.0 8.7 0.00013 21.7 6.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386001818|ref|YP_005920117.1| - 0.00046 19.6 11.1 0.033 13.8 0.3 3.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|386001818|ref|YP_005920117.1| - 0.0014 18.6 4.2 0.059 13.4 0.0 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386001818|ref|YP_005920117.1| - 0.0019 18.0 11.1 0.066 13.1 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|386001818|ref|YP_005920117.1| - 0.0054 16.5 2.9 0.12 12.1 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386001818|ref|YP_005920117.1| - 0.011 16.0 9.3 0.03 14.5 6.5 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386001818|ref|YP_005920117.1| - 0.78 10.5 11.4 8.5 7.2 1.3 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|386001818|ref|YP_005920117.1| - 2.1 8.9 7.5 0.48 11.0 0.1 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|386001818|ref|YP_005920117.1| - 6.7 7.1 13.5 5.8 7.3 2.1 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386001818|ref|YP_005920117.1| - 7.4 7.1 15.6 0.28 11.6 2.0 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain DUF39 PF01837.11 gi|386001819|ref|YP_005920118.1| - 4e-11 42.1 0.0 4.9e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 DUF4106 PF13388.1 gi|386001819|ref|YP_005920118.1| - 0.022 13.7 0.0 0.025 13.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) Methyltransf_11 PF08241.7 gi|386001820|ref|YP_005920119.1| - 5.6e-19 68.4 0.0 1.7e-18 66.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001820|ref|YP_005920119.1| - 3.7e-16 59.2 0.0 5e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386001820|ref|YP_005920119.1| - 1.1e-10 42.1 0.0 1.6e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386001820|ref|YP_005920119.1| - 1.1e-10 41.7 0.0 3.3e-10 40.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386001820|ref|YP_005920119.1| - 2.3e-10 40.8 0.0 1.3e-09 38.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386001820|ref|YP_005920119.1| - 9.8e-10 38.4 0.2 1.7e-09 37.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386001820|ref|YP_005920119.1| - 7.4e-09 35.0 0.0 5.9e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|386001820|ref|YP_005920119.1| - 1.6e-08 34.2 0.0 0.0043 16.6 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase domain TPMT PF05724.6 gi|386001820|ref|YP_005920119.1| - 1e-05 25.1 0.0 6.7e-05 22.4 0.0 1.9 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.9 gi|386001820|ref|YP_005920119.1| - 0.01 15.2 0.0 0.25 10.7 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|386001820|ref|YP_005920119.1| - 0.028 13.1 0.0 0.48 9.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.10 gi|386001820|ref|YP_005920119.1| - 0.047 13.3 0.0 0.48 10.0 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase MetW PF07021.7 gi|386001820|ref|YP_005920119.1| - 0.06 12.7 0.0 0.31 10.3 0.0 1.9 2 0 0 2 2 2 0 Methionine biosynthesis protein MetW MelC1 PF06236.6 gi|386001821|ref|YP_005920120.1| - 0.022 14.7 0.1 0.039 13.9 0.1 1.3 1 0 0 1 1 1 0 Tyrosinase co-factor MelC1 TAT_signal PF10518.4 gi|386001821|ref|YP_005920120.1| - 0.78 9.9 4.1 1.9 8.6 2.9 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Big_3_4 PF13754.1 gi|386001822|ref|YP_005920121.1| - 0.0045 17.2 0.3 0.017 15.4 0.2 1.9 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 3) DUF11 PF01345.13 gi|386001822|ref|YP_005920121.1| - 0.012 15.5 4.9 0.37 10.8 0.3 2.8 3 0 0 3 3 3 0 Domain of unknown function DUF11 FAD_binding_7 PF03441.9 gi|386001823|ref|YP_005920122.1| - 1.5e-38 132.6 0.6 2.9e-37 128.3 0.4 2.1 1 1 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|386001823|ref|YP_005920122.1| - 5.5e-30 104.2 0.2 1.3e-29 103.0 0.1 1.7 1 0 0 1 1 1 1 DNA photolyase Usp PF00582.21 gi|386001823|ref|YP_005920122.1| - 0.0013 18.9 0.0 0.0034 17.5 0.0 1.7 1 0 0 1 1 1 1 Universal stress protein family OrfB_Zn_ribbon PF07282.6 gi|386001824|ref|YP_005920123.1| - 1.6e-23 82.1 0.9 3.7e-23 80.9 0.6 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|386001824|ref|YP_005920123.1| - 4.2e-20 72.1 2.6 6.3e-20 71.5 1.8 1.3 1 0 0 1 1 1 1 Probable transposase C1_1 PF00130.17 gi|386001824|ref|YP_005920123.1| - 0.012 15.2 1.2 0.038 13.7 0.8 1.8 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.14 gi|386001824|ref|YP_005920123.1| - 0.073 12.7 0.1 0.13 11.9 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|386001824|ref|YP_005920123.1| - 0.18 11.3 4.4 6.6 6.3 4.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|386001824|ref|YP_005920123.1| - 0.28 10.9 4.2 0.88 9.3 0.3 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|386001824|ref|YP_005920123.1| - 2.4 7.6 8.4 0.79 9.2 3.1 2.3 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-BED PF02892.10 gi|386001824|ref|YP_005920123.1| - 3.7 7.3 8.1 3.2 7.5 0.1 3.0 2 1 1 3 3 3 0 BED zinc finger HypA PF01155.14 gi|386001825|ref|YP_005920124.1| - 5.2e-05 22.8 0.7 5.5e-05 22.8 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|386001825|ref|YP_005920124.1| - 0.00023 20.9 1.0 0.00027 20.6 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon TFIIS_C PF01096.13 gi|386001825|ref|YP_005920124.1| - 0.0026 17.3 3.0 0.38 10.4 0.1 2.1 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.1 gi|386001825|ref|YP_005920124.1| - 0.0026 17.4 0.8 0.0035 17.0 0.5 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|386001825|ref|YP_005920124.1| - 0.0029 17.5 4.5 0.011 15.6 3.1 1.8 1 1 0 1 1 1 1 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|386001825|ref|YP_005920124.1| - 0.004 16.5 3.4 0.0064 15.9 2.4 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DUF4428 PF14471.1 gi|386001825|ref|YP_005920124.1| - 0.004 16.8 1.8 0.01 15.5 1.3 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4428) zf-C3HC4_3 PF13920.1 gi|386001825|ref|YP_005920124.1| - 0.0042 16.7 0.6 0.0052 16.4 0.4 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) DUF702 PF05142.7 gi|386001825|ref|YP_005920124.1| - 0.0071 16.5 2.4 0.0078 16.3 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF702) zinc-ribbons_6 PF07191.7 gi|386001825|ref|YP_005920124.1| - 0.015 15.0 0.2 0.02 14.6 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons FYVE PF01363.16 gi|386001825|ref|YP_005920124.1| - 0.015 15.1 1.2 0.018 14.9 0.8 1.1 1 0 0 1 1 1 0 FYVE zinc finger zinc_ribbon_5 PF13719.1 gi|386001825|ref|YP_005920124.1| - 0.021 14.4 1.4 0.021 14.4 0.9 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|386001825|ref|YP_005920124.1| - 0.023 14.3 1.4 0.023 14.3 1.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-RING_5 PF14634.1 gi|386001825|ref|YP_005920124.1| - 0.026 14.2 1.3 0.036 13.8 0.9 1.2 1 0 0 1 1 1 0 zinc-RING finger domain zf-Sec23_Sec24 PF04810.10 gi|386001825|ref|YP_005920124.1| - 0.029 13.9 2.4 0.11 12.1 1.7 1.8 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger zf-dskA_traR PF01258.12 gi|386001825|ref|YP_005920124.1| - 0.062 13.0 2.3 2.2 8.1 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Zn_Tnp_IS1 PF03811.8 gi|386001825|ref|YP_005920124.1| - 0.063 12.7 4.3 0.16 11.4 0.6 2.2 2 0 0 2 2 2 0 InsA N-terminal domain RE_MamI PF09567.5 gi|386001825|ref|YP_005920124.1| - 0.068 12.2 0.1 0.068 12.2 0.1 1.0 1 0 0 1 1 1 0 MamI restriction endonuclease zf-ribbon_3 PF13248.1 gi|386001825|ref|YP_005920124.1| - 0.071 12.3 3.2 0.91 8.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|386001825|ref|YP_005920124.1| - 0.082 12.2 4.5 0.86 8.9 0.4 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|386001825|ref|YP_005920124.1| - 0.095 12.5 5.2 1.7 8.5 0.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|386001825|ref|YP_005920124.1| - 0.11 12.3 0.5 7.2 6.4 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-RING_4 PF14570.1 gi|386001825|ref|YP_005920124.1| - 0.12 11.9 1.6 0.17 11.4 1.1 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-RING_3 PF14369.1 gi|386001825|ref|YP_005920124.1| - 0.15 12.1 0.8 8.8 6.4 0.0 2.2 2 0 0 2 2 2 0 zinc-finger zf-trcl PF13451.1 gi|386001825|ref|YP_005920124.1| - 0.15 11.7 5.7 0.99 9.0 0.1 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain A2L_zn_ribbon PF08792.5 gi|386001825|ref|YP_005920124.1| - 0.15 11.5 0.2 0.15 11.5 0.1 2.2 3 0 0 3 3 2 0 A2L zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|386001825|ref|YP_005920124.1| - 0.16 11.4 1.0 0.21 11.0 0.7 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-H2C2_2 PF13465.1 gi|386001825|ref|YP_005920124.1| - 0.17 12.2 0.6 6.1 7.3 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain OrfB_Zn_ribbon PF07282.6 gi|386001825|ref|YP_005920124.1| - 0.18 11.5 3.5 0.26 10.9 2.4 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain RRN7 PF11781.3 gi|386001825|ref|YP_005920124.1| - 0.23 10.9 4.3 4 7.0 0.3 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C2H2 PF00096.21 gi|386001825|ref|YP_005920124.1| - 0.26 11.6 3.2 0.51 10.7 0.2 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2039 PF10217.4 gi|386001825|ref|YP_005920124.1| - 0.28 11.2 2.4 1.2 9.2 1.6 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) Ogr_Delta PF04606.7 gi|386001825|ref|YP_005920124.1| - 0.39 10.4 2.2 8.2 6.1 0.3 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger C1_4 PF07975.7 gi|386001825|ref|YP_005920124.1| - 0.41 10.6 3.2 5.1 7.1 0.1 2.0 1 1 1 2 2 2 0 TFIIH C1-like domain Rubredoxin PF00301.15 gi|386001825|ref|YP_005920124.1| - 0.58 10.0 3.4 4.4 7.2 0.1 2.3 1 1 1 2 2 2 0 Rubredoxin zf-IS66 PF13005.2 gi|386001825|ref|YP_005920124.1| - 0.64 10.0 0.2 0.64 10.0 0.1 2.3 2 1 2 4 4 3 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_6 PF14599.1 gi|386001825|ref|YP_005920124.1| - 0.71 9.7 2.6 1.4 8.7 1.8 1.5 1 1 0 1 1 1 0 Zinc-ribbon DUF3797 PF12677.2 gi|386001825|ref|YP_005920124.1| - 0.85 9.2 4.5 2.1 8.0 0.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-NADH-PPase PF09297.6 gi|386001825|ref|YP_005920124.1| - 0.99 8.9 7.4 1.6 8.2 0.6 2.2 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|386001825|ref|YP_005920124.1| - 3.3 7.8 6.4 2.7 8.0 0.6 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|386001825|ref|YP_005920124.1| - 3.6 7.3 6.1 12 5.6 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal DUF2098 PF09871.4 gi|386001827|ref|YP_005920126.1| - 4.4e-24 84.2 0.4 4.8e-24 84.0 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) YdfZ PF14001.1 gi|386001827|ref|YP_005920126.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 YdfZ protein DUF2117 PF09890.4 gi|386001828|ref|YP_005920127.1| - 1.1e-51 175.0 0.0 2.3e-51 174.0 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2117) OrfB_IS605 PF01385.14 gi|386001829|ref|YP_005920128.1| - 9.3e-39 133.1 0.0 1.6e-38 132.3 0.0 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|386001829|ref|YP_005920128.1| - 2.5e-24 84.6 0.0 6e-24 83.4 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|386001829|ref|YP_005920128.1| - 3.9e-18 64.5 0.8 7.4e-18 63.6 0.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-NADH-PPase PF09297.6 gi|386001829|ref|YP_005920128.1| - 0.0011 18.4 0.2 0.0018 17.7 0.2 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|386001829|ref|YP_005920128.1| - 0.0081 15.9 0.3 0.015 15.0 0.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.10 gi|386001829|ref|YP_005920128.1| - 0.014 14.7 5.7 0.024 14.0 0.1 3.3 3 0 0 3 3 3 0 RecR protein TF_Zn_Ribbon PF08271.7 gi|386001829|ref|YP_005920128.1| - 0.021 14.1 0.2 1 8.7 0.0 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|386001829|ref|YP_005920128.1| - 0.075 12.5 0.5 6.1 6.4 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.22 gi|386001829|ref|YP_005920128.1| - 0.56 9.6 3.0 0.92 8.9 0.2 2.4 1 1 1 2 2 2 0 GATA zinc finger SpoIIE PF07228.7 gi|386001830|ref|YP_005920129.1| - 1.5e-38 132.4 0.2 3.3e-38 131.3 0.1 1.6 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Cache_1 PF02743.13 gi|386001830|ref|YP_005920129.1| - 1.5e-11 43.6 0.0 5.8e-11 41.7 0.0 2.0 2 0 0 2 2 2 1 Cache domain HAMP PF00672.20 gi|386001830|ref|YP_005920129.1| - 3.1e-07 30.4 1.9 3.1e-07 30.4 1.3 2.9 3 0 0 3 3 3 1 HAMP domain Sigma70_r4 PF04545.11 gi|386001831|ref|YP_005920130.1| - 0.085 12.1 0.0 0.19 11.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 AAA_3 PF07726.6 gi|386001832|ref|YP_005920131.1| - 1.8e-63 211.9 0.2 4.1e-63 210.8 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|386001832|ref|YP_005920131.1| - 4.6e-12 45.8 0.0 7.3e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|386001832|ref|YP_005920131.1| - 4.2e-08 32.3 0.0 9.8e-08 31.1 0.0 1.6 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|386001832|ref|YP_005920131.1| - 1.7e-07 31.4 0.0 3.4e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|386001832|ref|YP_005920131.1| - 8.2e-05 21.7 0.3 0.00045 19.3 0.2 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|386001832|ref|YP_005920131.1| - 0.00058 19.3 0.1 0.0051 16.2 0.1 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|386001832|ref|YP_005920131.1| - 0.0033 16.6 1.2 0.042 12.9 0.2 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|386001832|ref|YP_005920131.1| - 0.019 14.9 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|386001832|ref|YP_005920131.1| - 0.04 14.0 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF58 PF01882.13 gi|386001833|ref|YP_005920132.1| - 3.8e-19 68.6 0.2 8.6e-19 67.4 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_CoxE PF05762.9 gi|386001833|ref|YP_005920132.1| - 0.0025 16.9 0.2 0.0084 15.2 0.2 1.8 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2088 PF09861.4 gi|386001834|ref|YP_005920133.1| - 6.1e-53 178.8 0.0 1.5e-52 177.5 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|386001834|ref|YP_005920133.1| - 0.018 14.5 0.0 0.032 13.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF362) UPF0150 PF03681.10 gi|386001834|ref|YP_005920133.1| - 0.073 12.7 0.7 0.9 9.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) DUF772 PF05598.6 gi|386001835|ref|YP_005920134.1| - 2.3e-21 75.4 0.1 5.2e-21 74.3 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|386001835|ref|YP_005920134.1| - 4.3e-12 46.0 0.2 8e-12 45.1 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|386001835|ref|YP_005920134.1| - 1.4e-05 24.7 0.0 3.3e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease DUF1699 PF08004.6 gi|386001836|ref|YP_005920135.1| - 2.2e-57 192.1 0.0 2.5e-57 192.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Phospholip_B PF04916.8 gi|386001837|ref|YP_005920136.1| - 1.1e-11 43.6 0.0 1.7e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Phospholipase B NAAA-beta PF15508.1 gi|386001837|ref|YP_005920136.1| - 0.028 14.7 0.1 0.067 13.5 0.0 1.6 1 0 0 1 1 1 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase SecE PF00584.15 gi|386001837|ref|YP_005920136.1| - 0.41 10.2 1.5 0.75 9.4 1.1 1.4 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex Rhodanese PF00581.15 gi|386001838|ref|YP_005920137.1| - 4.3e-18 65.7 0.0 3.3e-10 40.3 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain Aldo_ket_red PF00248.16 gi|386001839|ref|YP_005920138.1| - 4.9e-22 78.0 0.0 1.9e-19 69.5 0.0 2.0 2 0 0 2 2 2 2 Aldo/keto reductase family Phyto_Pns9_10 PF05878.6 gi|386001840|ref|YP_005920139.1| - 0.07 12.1 0.0 0.082 11.9 0.0 1.1 1 0 0 1 1 1 0 Phytoreovirus nonstructural protein Pns9/Pns10 Acetyltransf_3 PF13302.1 gi|386001841|ref|YP_005920140.1| - 2.7e-13 50.3 0.0 3.6e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|386001841|ref|YP_005920140.1| - 6.4e-05 22.9 0.0 0.00011 22.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|386001841|ref|YP_005920140.1| - 0.00077 19.4 0.0 0.0011 18.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|386001841|ref|YP_005920140.1| - 0.0036 17.1 0.0 0.0052 16.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|386001841|ref|YP_005920140.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain LCM PF04072.9 gi|386001842|ref|YP_005920141.1| - 8.4e-15 54.8 0.0 1.1e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase Nitroreductase PF00881.19 gi|386001843|ref|YP_005920142.1| - 7.3e-13 48.6 1.0 4.7e-05 23.2 0.2 3.6 2 2 1 3 3 3 3 Nitroreductase family NurA PF09376.5 gi|386001844|ref|YP_005920143.1| - 5.9e-07 29.2 0.1 0.011 15.2 0.0 2.4 2 1 0 2 2 2 2 NurA domain RE_TaqI PF09573.5 gi|386001844|ref|YP_005920143.1| - 0.13 11.3 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 TaqI restriction endonuclease AAA_10 PF12846.2 gi|386001845|ref|YP_005920144.1| - 8.3e-19 68.1 0.1 1.5e-17 63.9 0.1 2.1 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|386001845|ref|YP_005920144.1| - 5.5e-18 65.6 0.0 9.3e-18 64.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|386001845|ref|YP_005920144.1| - 0.001 18.5 0.0 0.0025 17.3 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|386001845|ref|YP_005920144.1| - 0.0023 16.6 0.1 0.04 12.5 0.0 2.3 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|386001845|ref|YP_005920144.1| - 0.073 11.4 0.0 0.12 10.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) Metallophos_2 PF12850.2 gi|386001846|ref|YP_005920145.1| - 2.7e-15 56.5 0.2 4e-15 55.9 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|386001846|ref|YP_005920145.1| - 2.8e-14 52.9 0.2 3.7e-13 49.3 0.2 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|386001846|ref|YP_005920145.1| - 0.056 12.5 0.0 2.9 6.9 0.0 2.3 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily AAA_23 PF13476.1 gi|386001847|ref|YP_005920146.1| - 1.8e-20 74.1 0.0 1.8e-20 74.1 0.0 3.9 1 1 1 2 2 1 1 AAA domain SMC_N PF02463.14 gi|386001847|ref|YP_005920146.1| - 1.1e-19 70.5 0.0 1.8e-19 69.8 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|386001847|ref|YP_005920146.1| - 1e-07 31.3 0.0 1.9e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|386001847|ref|YP_005920146.1| - 9.2e-07 28.6 0.0 2.6e-06 27.2 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|386001847|ref|YP_005920146.1| - 1.3e-06 27.7 0.0 2.2e-05 23.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|386001847|ref|YP_005920146.1| - 4e-06 27.0 0.1 0.00082 19.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|386001847|ref|YP_005920146.1| - 0.00014 22.1 0.2 0.0011 19.2 0.0 2.7 2 1 0 2 2 2 1 ABC transporter AAA_19 PF13245.1 gi|386001847|ref|YP_005920146.1| - 0.012 15.2 12.1 0.079 12.7 0.0 4.4 3 1 0 3 3 3 0 Part of AAA domain MukB PF04310.7 gi|386001847|ref|YP_005920146.1| - 0.11 11.8 0.3 0.9 8.8 0.0 2.6 3 0 0 3 3 3 0 MukB N-terminal Occludin_ELL PF07303.8 gi|386001847|ref|YP_005920146.1| - 0.2 12.4 0.8 4.4 8.1 0.0 3.8 3 1 1 4 4 4 0 Occludin homology domain Arena_RNA_pol PF06317.6 gi|386001847|ref|YP_005920146.1| - 0.22 8.1 2.3 0.3 7.6 1.6 1.0 1 0 0 1 1 1 0 Arenavirus RNA polymerase DAO PF01266.19 gi|386001848|ref|YP_005920147.1| - 1.9e-11 43.5 7.2 6.8e-06 25.2 0.9 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|386001848|ref|YP_005920147.1| - 5.7e-11 42.0 3.9 1.1e-08 34.5 0.5 3.0 2 1 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|386001848|ref|YP_005920147.1| - 6.9e-09 34.6 0.6 2.5e-08 32.7 0.4 1.8 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|386001848|ref|YP_005920147.1| - 4.6e-08 32.5 6.1 8.4e-08 31.7 4.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|386001848|ref|YP_005920147.1| - 4.5e-07 28.8 0.9 0.0018 16.9 0.0 2.8 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|386001848|ref|YP_005920147.1| - 9.9e-07 28.8 0.3 1.8e-06 27.9 0.2 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|386001848|ref|YP_005920147.1| - 1.2e-06 27.7 3.4 0.0094 14.9 1.5 2.8 2 1 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|386001848|ref|YP_005920147.1| - 5.6e-06 26.2 0.3 5.6e-06 26.2 0.2 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|386001848|ref|YP_005920147.1| - 1.3e-05 24.2 1.2 1.6e-05 23.9 0.8 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|386001848|ref|YP_005920147.1| - 2.9e-05 23.3 0.2 0.00036 19.6 0.1 2.2 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|386001848|ref|YP_005920147.1| - 4e-05 22.6 7.7 5.7e-05 22.1 1.7 2.3 1 1 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|386001848|ref|YP_005920147.1| - 0.008 15.7 0.3 0.016 14.7 0.2 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|386001848|ref|YP_005920147.1| - 0.01 16.2 0.9 0.027 14.8 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|386001848|ref|YP_005920147.1| - 0.011 15.7 0.9 0.039 14.0 0.3 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|386001848|ref|YP_005920147.1| - 0.017 14.8 0.2 0.03 13.9 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|386001848|ref|YP_005920147.1| - 0.08 12.7 0.4 0.4 10.4 0.0 2.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|386001848|ref|YP_005920147.1| - 0.1 12.8 0.1 0.34 11.1 0.1 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding OCD_Mu_crystall PF02423.10 gi|386001849|ref|YP_005920148.1| - 6.8e-104 346.9 1.5 7.6e-104 346.8 1.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|386001849|ref|YP_005920148.1| - 0.0033 17.5 0.0 0.0054 16.8 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DUF1638 PF07796.6 gi|386001850|ref|YP_005920149.1| - 4.1e-18 65.5 0.0 1.3e-17 63.9 0.0 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1638) Thioredoxin PF00085.15 gi|386001851|ref|YP_005920150.1| - 1.1e-26 92.5 0.0 1.4e-26 92.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|386001851|ref|YP_005920150.1| - 2.2e-08 34.2 0.1 1.8e-07 31.3 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|386001851|ref|YP_005920150.1| - 7e-07 29.2 0.2 0.0011 19.0 0.0 2.5 2 1 1 3 3 3 2 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|386001851|ref|YP_005920150.1| - 0.00062 19.3 0.1 0.00084 18.9 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|386001851|ref|YP_005920150.1| - 0.0032 17.2 0.1 0.006 16.3 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.16 gi|386001851|ref|YP_005920150.1| - 0.0062 16.2 0.1 1.2 8.8 0.0 2.5 1 1 2 3 3 3 1 AhpC/TSA family Phosducin PF02114.11 gi|386001851|ref|YP_005920150.1| - 0.0079 14.9 0.0 0.011 14.5 0.0 1.3 1 1 0 1 1 1 1 Phosducin Redoxin PF08534.5 gi|386001851|ref|YP_005920150.1| - 0.0098 15.4 0.1 0.23 11.0 0.1 2.1 1 1 1 2 2 2 1 Redoxin DUF953 PF06110.6 gi|386001851|ref|YP_005920150.1| - 0.01 15.2 0.1 0.07 12.5 0.0 2.0 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Thioredoxin_7 PF13899.1 gi|386001851|ref|YP_005920150.1| - 0.019 14.9 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like HyaE PF07449.6 gi|386001851|ref|YP_005920150.1| - 0.055 13.3 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Pribosyltran PF00156.22 gi|386001853|ref|YP_005920152.1| - 1.2e-21 76.6 0.1 2.4e-21 75.7 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|386001853|ref|YP_005920152.1| - 0.0014 18.0 0.5 0.026 13.8 0.3 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|386001853|ref|YP_005920152.1| - 0.0028 16.8 0.0 0.0035 16.5 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_7 PF02796.10 gi|386001853|ref|YP_005920152.1| - 0.013 15.3 0.0 0.036 13.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|386001853|ref|YP_005920152.1| - 0.016 14.5 0.0 0.037 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family UPF0150 PF03681.10 gi|386001853|ref|YP_005920152.1| - 0.033 13.8 0.1 0.065 12.8 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) Fe_dep_repress PF01325.14 gi|386001853|ref|YP_005920152.1| - 0.039 13.8 0.0 2.8 7.9 0.0 2.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|386001853|ref|YP_005920152.1| - 0.041 13.5 0.0 0.21 11.3 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_11 PF08279.7 gi|386001853|ref|YP_005920152.1| - 0.043 13.4 0.1 0.14 11.7 0.0 1.9 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.11 gi|386001853|ref|YP_005920152.1| - 0.073 12.3 0.3 0.32 10.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 GntR PF00392.16 gi|386001853|ref|YP_005920152.1| - 0.12 11.8 0.2 0.76 9.2 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family PIN PF01850.16 gi|386001854|ref|YP_005920153.1| - 0.00011 22.5 2.5 0.00012 22.3 0.7 1.7 1 1 1 2 2 2 1 PIN domain UPF0278 PF08745.6 gi|386001854|ref|YP_005920153.1| - 0.0048 16.1 0.3 0.0086 15.3 0.1 1.5 2 0 0 2 2 2 1 UPF0278 family Rad50_zn_hook PF04423.9 gi|386001854|ref|YP_005920153.1| - 0.0093 15.4 1.8 0.0093 15.4 1.2 2.7 2 1 1 3 3 3 2 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.11 gi|386001854|ref|YP_005920153.1| - 0.0098 15.5 5.8 0.033 13.8 0.3 2.4 1 1 1 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.2 gi|386001854|ref|YP_005920153.1| - 0.027 14.3 3.2 0.042 13.6 2.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon GcrA PF07750.6 gi|386001854|ref|YP_005920153.1| - 0.038 14.1 0.1 0.049 13.8 0.1 1.1 1 0 0 1 1 1 0 GcrA cell cycle regulator ETF PF01012.16 gi|386001854|ref|YP_005920153.1| - 0.045 13.4 1.2 1.9 8.1 0.0 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein domain ProRS-C_1 PF09180.6 gi|386001854|ref|YP_005920153.1| - 0.35 10.8 3.4 0.77 9.7 2.3 1.7 1 1 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal zinc_ribbon_2 PF13240.1 gi|386001854|ref|YP_005920153.1| - 0.8 9.2 7.0 2.5 7.6 4.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Prok-RING_4 PF14447.1 gi|386001854|ref|YP_005920153.1| - 1.3 8.5 4.4 7.5 6.1 0.3 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 zf-ribbon_3 PF13248.1 gi|386001854|ref|YP_005920153.1| - 2.1 7.6 8.2 17 4.8 5.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|386001854|ref|YP_005920153.1| - 2.8 7.5 10.7 1.8 8.1 1.5 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|386001854|ref|YP_005920153.1| - 4.1 7.4 8.6 8 6.5 0.9 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|386001854|ref|YP_005920153.1| - 9.7 6.3 9.4 4.9 7.2 0.2 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ABC_tran PF00005.22 gi|386001856|ref|YP_005920155.1| - 1.6e-35 122.3 0.0 3.9e-19 69.3 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|386001856|ref|YP_005920155.1| - 1.7e-12 47.9 5.4 0.00024 21.1 0.0 4.2 2 2 2 4 4 4 3 AAA domain RLI PF04068.10 gi|386001856|ref|YP_005920155.1| - 1.3e-11 43.8 2.7 3.1e-11 42.6 1.9 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.14 gi|386001856|ref|YP_005920155.1| - 3.5e-10 39.4 3.0 0.00037 19.7 0.2 3.8 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.22 gi|386001856|ref|YP_005920155.1| - 6.2e-08 31.9 3.9 6.2e-08 31.9 2.7 2.5 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|386001856|ref|YP_005920155.1| - 5.1e-07 29.2 13.2 4.3e-06 26.3 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_29 PF13555.1 gi|386001856|ref|YP_005920155.1| - 8.9e-06 25.1 0.6 0.012 15.1 0.2 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4_10 PF13237.1 gi|386001856|ref|YP_005920155.1| - 0.00022 20.9 6.9 0.00062 19.5 0.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386001856|ref|YP_005920155.1| - 0.00028 20.6 6.0 0.00047 19.9 4.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain SbcCD_C PF13558.1 gi|386001856|ref|YP_005920155.1| - 0.00033 20.4 0.1 1.8 8.5 0.0 3.1 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Fer4_2 PF12797.2 gi|386001856|ref|YP_005920155.1| - 0.00057 19.6 3.1 0.00057 19.6 2.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_25 PF13481.1 gi|386001856|ref|YP_005920155.1| - 0.00068 19.0 2.9 0.4 10.0 0.2 3.2 2 1 0 2 2 2 2 AAA domain Fer4_7 PF12838.2 gi|386001856|ref|YP_005920155.1| - 0.00079 19.7 1.4 0.00079 19.7 0.9 2.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain AAA_17 PF13207.1 gi|386001856|ref|YP_005920155.1| - 0.0008 20.2 0.6 0.072 13.9 0.0 2.8 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|386001856|ref|YP_005920155.1| - 0.00093 18.4 0.3 0.69 9.0 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|386001856|ref|YP_005920155.1| - 0.0011 19.3 0.9 0.58 10.4 0.1 2.3 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|386001856|ref|YP_005920155.1| - 0.0042 15.8 0.0 1.5 7.4 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|386001856|ref|YP_005920155.1| - 0.0065 16.4 1.2 4.3 7.2 0.3 2.8 2 1 0 2 2 2 0 AAA ATPase domain Fer4_9 PF13187.1 gi|386001856|ref|YP_005920155.1| - 0.0074 16.5 9.4 0.02 15.1 6.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA PF00004.24 gi|386001856|ref|YP_005920155.1| - 0.0089 16.2 0.9 1.3 9.2 0.0 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Fer4_16 PF13484.1 gi|386001856|ref|YP_005920155.1| - 0.014 16.1 0.2 0.014 16.1 0.1 1.8 2 0 0 2 2 1 0 4Fe-4S double cluster binding domain RNA_helicase PF00910.17 gi|386001856|ref|YP_005920155.1| - 0.029 14.5 0.2 8.6 6.5 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_14 PF13173.1 gi|386001856|ref|YP_005920155.1| - 0.03 14.2 0.4 2.7 7.8 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_5 PF07728.9 gi|386001856|ref|YP_005920155.1| - 0.042 13.5 1.1 12 5.6 0.1 3.3 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|386001856|ref|YP_005920155.1| - 0.052 13.6 2.0 3.2 7.9 0.0 3.2 3 1 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|386001856|ref|YP_005920155.1| - 0.071 12.7 1.4 3.9 7.0 0.1 2.5 2 0 0 2 2 2 0 NACHT domain AAA_15 PF13175.1 gi|386001856|ref|YP_005920155.1| - 0.14 11.1 0.1 15 4.5 0.0 2.5 3 0 0 3 3 3 0 AAA ATPase domain SRP54 PF00448.17 gi|386001856|ref|YP_005920155.1| - 0.14 11.5 2.4 6.1 6.2 0.1 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Miro PF08477.8 gi|386001856|ref|YP_005920155.1| - 0.19 12.2 0.1 1 9.8 0.0 2.1 2 0 0 2 2 2 0 Miro-like protein MobB PF03205.9 gi|386001856|ref|YP_005920155.1| - 0.23 11.1 0.5 2.8 7.6 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|386001856|ref|YP_005920155.1| - 0.23 10.9 1.6 3.2 7.2 0.2 2.4 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|386001856|ref|YP_005920155.1| - 0.27 9.9 2.1 6 5.5 0.1 2.2 2 0 0 2 2 2 0 ArgK protein NTPase_1 PF03266.10 gi|386001856|ref|YP_005920155.1| - 0.28 10.8 2.1 18 5.0 0.2 3.2 3 0 0 3 3 3 0 NTPase Fer4_8 PF13183.1 gi|386001856|ref|YP_005920155.1| - 0.28 11.2 6.5 0.93 9.5 4.6 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|386001856|ref|YP_005920155.1| - 0.44 10.3 6.3 1.2 8.9 0.2 3.0 3 0 0 3 3 2 0 Part of AAA domain AAA_18 PF13238.1 gi|386001856|ref|YP_005920155.1| - 0.53 10.5 3.4 14 6.0 0.8 3.3 2 1 0 2 2 2 0 AAA domain Fer4_4 PF12800.2 gi|386001856|ref|YP_005920155.1| - 0.73 10.3 12.0 0.042 14.1 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|386001856|ref|YP_005920155.1| - 0.73 10.2 8.6 0.17 12.2 2.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_28 PF13521.1 gi|386001856|ref|YP_005920155.1| - 2.7 7.9 6.6 4.1 7.3 0.3 3.0 4 0 0 4 4 3 0 AAA domain Fer4_3 PF12798.2 gi|386001856|ref|YP_005920155.1| - 3.6 8.3 16.0 0.053 14.1 4.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|386001856|ref|YP_005920155.1| - 9.1 6.7 9.8 0.31 11.4 1.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain FKBP_C PF00254.23 gi|386001857|ref|YP_005920156.1| - 1.3e-27 95.5 0.0 2.6e-27 94.6 0.0 1.5 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Chorein_N PF12624.2 gi|386001857|ref|YP_005920156.1| - 0.052 13.0 0.2 0.082 12.4 0.2 1.2 1 0 0 1 1 1 0 N-terminal region of Chorein, a TM vesicle-mediated sorter FKBP_C PF00254.23 gi|386001858|ref|YP_005920157.1| - 6e-26 90.2 0.1 8.7e-26 89.7 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF2196 PF09962.4 gi|386001859|ref|YP_005920158.1| - 5.9e-33 112.4 1.7 7.4e-33 112.1 1.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) DUF262 PF03235.9 gi|386001860|ref|YP_005920159.1| - 3e-28 99.3 0.2 2.5e-27 96.3 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function DUF262 HNH_4 PF13395.1 gi|386001860|ref|YP_005920159.1| - 0.00027 20.5 0.1 0.0013 18.3 0.0 2.1 2 0 0 2 2 2 1 HNH endonuclease DUF1524 PF07510.6 gi|386001860|ref|YP_005920159.1| - 0.0042 16.9 0.0 0.01 15.6 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) DUF3319 PF11782.3 gi|386001860|ref|YP_005920159.1| - 0.03 14.1 0.2 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3319) LacY_symp PF01306.14 gi|386001860|ref|YP_005920159.1| - 0.14 10.6 0.0 0.21 10.0 0.0 1.2 1 0 0 1 1 1 0 LacY proton/sugar symporter McrBC PF10117.4 gi|386001861|ref|YP_005920160.1| - 0.021 13.7 0.0 0.022 13.6 0.0 1.1 1 0 0 1 1 1 0 McrBC 5-methylcytosine restriction system component DUF524 PF04411.7 gi|386001861|ref|YP_005920160.1| - 0.1 12.4 0.1 0.16 11.7 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF524) Acylphosphatase PF00708.13 gi|386001862|ref|YP_005920161.1| - 1e-11 44.7 0.1 1.8e-11 43.9 0.1 1.5 1 0 0 1 1 1 1 Acylphosphatase DUF1664 PF07889.7 gi|386001862|ref|YP_005920161.1| - 0.016 15.0 0.4 0.025 14.3 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) EssA PF10661.4 gi|386001862|ref|YP_005920161.1| - 2 8.0 5.2 6.7 6.3 0.1 2.1 1 1 1 2 2 2 0 WXG100 protein secretion system (Wss), protein EssA Aminotran_1_2 PF00155.16 gi|386001863|ref|YP_005920162.1| - 1.3e-36 126.3 0.0 1.6e-36 126.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|386001863|ref|YP_005920162.1| - 1.1e-05 24.2 0.0 1.3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Pyridox_oxidase PF01243.15 gi|386001864|ref|YP_005920163.1| - 2e-12 46.9 0.0 3.6e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|386001864|ref|YP_005920163.1| - 9.6e-07 28.7 0.0 1.3e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.2 gi|386001864|ref|YP_005920163.1| - 0.022 15.0 0.0 0.038 14.3 0.0 1.4 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase HTH_20 PF12840.2 gi|386001865|ref|YP_005920164.1| - 0.00018 21.2 0.0 0.00029 20.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain LIM PF00412.17 gi|386001865|ref|YP_005920164.1| - 0.00045 20.2 3.0 0.00078 19.4 2.1 1.4 1 0 0 1 1 1 1 LIM domain TrmB PF01978.14 gi|386001865|ref|YP_005920164.1| - 0.0024 17.5 0.0 0.003 17.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|386001865|ref|YP_005920164.1| - 0.025 14.0 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|386001865|ref|YP_005920164.1| - 0.027 13.8 0.0 0.043 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|386001865|ref|YP_005920164.1| - 0.04 13.5 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain LexA_DNA_bind PF01726.11 gi|386001865|ref|YP_005920164.1| - 0.049 13.1 0.0 0.11 12.0 0.0 1.6 1 1 0 1 1 1 0 LexA DNA binding domain MarR_2 PF12802.2 gi|386001865|ref|YP_005920164.1| - 0.06 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|386001865|ref|YP_005920164.1| - 0.078 12.5 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain CMD PF02627.15 gi|386001866|ref|YP_005920165.1| - 5.8e-15 54.8 0.8 6.6e-15 54.7 0.5 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family zinc_ribbon_5 PF13719.1 gi|386001867|ref|YP_005920166.1| - 0.0017 17.9 2.1 0.51 9.9 0.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.14 gi|386001867|ref|YP_005920166.1| - 0.0072 16.0 0.5 0.014 15.0 0.4 1.5 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|386001867|ref|YP_005920166.1| - 0.02 14.5 4.1 1.1 8.9 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF2293 PF10056.4 gi|386001867|ref|YP_005920166.1| - 0.073 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2293) Zn-ribbon_8 PF09723.5 gi|386001867|ref|YP_005920166.1| - 0.17 11.8 2.3 0.43 10.5 1.6 1.7 1 0 0 1 1 1 0 Zinc ribbon domain FdhE PF04216.7 gi|386001867|ref|YP_005920166.1| - 0.69 9.5 3.3 0.87 9.2 1.4 1.6 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation Rpr2 PF04032.11 gi|386001868|ref|YP_005920167.1| - 5.5e-16 58.2 0.6 6.9e-16 57.9 0.4 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|386001868|ref|YP_005920167.1| - 0.0048 16.6 3.0 0.009 15.8 2.1 1.4 1 0 0 1 1 1 1 Putative zinc ribbon domain DUF1652 PF07865.6 gi|386001869|ref|YP_005920168.1| - 0.043 13.4 0.0 0.054 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1652) Ham1p_like PF01725.11 gi|386001870|ref|YP_005920169.1| - 2.1e-48 164.2 0.0 2.4e-48 164.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family CARDB PF07705.6 gi|386001871|ref|YP_005920170.1| - 1.4e-05 25.0 0.0 0.00069 19.6 0.0 2.7 2 1 0 2 2 2 1 CARDB DUF11 PF01345.13 gi|386001871|ref|YP_005920170.1| - 1.8e-05 24.7 6.4 0.0029 17.5 0.1 3.4 3 1 0 3 3 3 2 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|386001871|ref|YP_005920170.1| - 0.011 15.7 5.3 0.16 12.0 0.8 3.9 3 1 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase BatD PF13584.1 gi|386001871|ref|YP_005920170.1| - 0.14 10.7 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 Oxygen tolerance Asparaginase PF00710.15 gi|386001872|ref|YP_005920171.1| - 6.1e-91 304.5 0.1 7.6e-91 304.2 0.1 1.0 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|386001872|ref|YP_005920171.1| - 0.022 14.1 0.0 1.7 7.9 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein domain Ribosomal_L16 PF00252.13 gi|386001873|ref|YP_005920172.1| - 1.2e-29 102.7 0.0 1.2e-29 102.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e eIF-5_eIF-2B PF01873.12 gi|386001874|ref|YP_005920173.1| - 7.5e-41 138.6 0.0 1.2e-40 138.0 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|386001874|ref|YP_005920173.1| - 1.4e-12 47.2 0.5 5.3e-12 45.3 0.3 1.9 2 0 0 2 2 2 1 TRAM domain DUF4265 PF14085.1 gi|386001874|ref|YP_005920173.1| - 0.0005 19.8 0.0 0.00086 19.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4265) zf-RanBP PF00641.13 gi|386001874|ref|YP_005920173.1| - 0.36 9.9 0.1 0.36 9.9 0.1 1.6 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others ZF-HD_dimer PF04770.7 gi|386001874|ref|YP_005920173.1| - 0.38 10.8 3.6 1.1 9.3 2.6 1.7 1 1 0 1 1 1 0 ZF-HD protein dimerisation region F420_ligase PF01996.11 gi|386001876|ref|YP_005920175.1| - 6.2e-66 221.7 0.0 7.1e-66 221.5 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Sigma70_r3 PF04539.11 gi|386001876|ref|YP_005920175.1| - 0.047 13.5 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 CofC PF01983.11 gi|386001877|ref|YP_005920176.1| - 4.9e-49 166.2 0.0 6.5e-49 165.8 0.0 1.1 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|386001877|ref|YP_005920176.1| - 0.0005 20.1 0.0 0.00069 19.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain ACT PF01842.20 gi|386001878|ref|YP_005920177.1| - 0.004 16.5 0.0 0.0087 15.5 0.0 1.7 1 1 0 1 1 1 1 ACT domain AAA PF00004.24 gi|386001879|ref|YP_005920178.1| - 4e-37 127.3 0.0 7.2e-37 126.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|386001879|ref|YP_005920178.1| - 1.2e-09 38.3 0.0 2.2e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|386001879|ref|YP_005920178.1| - 1e-08 34.5 0.1 1.1e-07 31.2 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|386001879|ref|YP_005920178.1| - 1.3e-07 30.7 0.2 2.5e-07 29.7 0.0 1.5 2 0 0 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|386001879|ref|YP_005920178.1| - 2.4e-06 28.3 0.9 9.6e-06 26.4 0.0 2.2 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|386001879|ref|YP_005920178.1| - 6.1e-05 22.2 0.0 0.00027 20.1 0.0 2.0 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI DUF815 PF05673.8 gi|386001879|ref|YP_005920178.1| - 0.0002 20.3 0.0 0.00076 18.4 0.0 2.0 1 1 2 3 3 3 1 Protein of unknown function (DUF815) AAA_16 PF13191.1 gi|386001879|ref|YP_005920178.1| - 0.00025 21.0 0.1 0.0067 16.4 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|386001879|ref|YP_005920178.1| - 0.00028 21.0 0.3 0.0066 16.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|386001879|ref|YP_005920178.1| - 0.00045 19.6 0.0 0.00084 18.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|386001879|ref|YP_005920178.1| - 0.00061 19.5 0.1 0.0032 17.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|386001879|ref|YP_005920178.1| - 0.0013 18.4 0.0 0.0051 16.4 0.0 2.0 1 1 0 1 1 1 1 Bacterial dnaA protein Sigma54_activat PF00158.21 gi|386001879|ref|YP_005920178.1| - 0.0029 17.0 0.0 0.048 13.1 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|386001879|ref|YP_005920178.1| - 0.0035 17.2 0.0 0.0068 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|386001879|ref|YP_005920178.1| - 0.0053 16.7 0.0 0.016 15.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|386001879|ref|YP_005920178.1| - 0.0069 15.8 0.4 0.099 12.0 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|386001879|ref|YP_005920178.1| - 0.013 15.8 0.0 0.038 14.2 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.1 gi|386001879|ref|YP_005920178.1| - 0.013 15.0 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|386001879|ref|YP_005920178.1| - 0.014 15.6 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase IPT PF01745.11 gi|386001879|ref|YP_005920178.1| - 0.033 13.3 0.0 0.061 12.4 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase Guanylate_kin PF00625.16 gi|386001879|ref|YP_005920178.1| - 0.035 13.5 0.2 0.62 9.4 0.0 2.7 3 0 0 3 3 3 0 Guanylate kinase Zeta_toxin PF06414.7 gi|386001879|ref|YP_005920178.1| - 0.055 12.5 0.2 0.35 9.9 0.0 2.2 1 1 1 2 2 2 0 Zeta toxin Parvo_NS1 PF01057.12 gi|386001879|ref|YP_005920178.1| - 0.076 11.8 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.22 gi|386001879|ref|YP_005920178.1| - 0.12 12.6 0.0 0.31 11.3 0.0 1.7 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.7 gi|386001879|ref|YP_005920178.1| - 0.16 11.6 0.1 0.45 10.1 0.0 1.7 1 1 1 2 2 2 0 NACHT domain AAA_23 PF13476.1 gi|386001879|ref|YP_005920178.1| - 0.16 12.2 0.0 0.51 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain SapB_1 PF05184.10 gi|386001880|ref|YP_005920179.1| - 0.4 10.5 0.1 0.4 10.5 0.0 2.4 3 0 0 3 3 3 0 Saposin-like type B, region 1 ASCH PF04266.9 gi|386001881|ref|YP_005920180.1| - 0.045 14.1 0.0 0.062 13.6 0.0 1.2 1 0 0 1 1 1 0 ASCH domain TPD52 PF04201.10 gi|386001882|ref|YP_005920181.1| - 1.4 8.6 4.7 6.7 6.4 3.2 1.9 2 0 0 2 2 2 0 Tumour protein D52 family DUF4352 PF11611.3 gi|386001883|ref|YP_005920182.1| - 4.3e-14 52.7 0.1 5.2e-14 52.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) Phi-29_GP4 PF05464.6 gi|386001885|ref|YP_005920184.1| - 0.041 13.7 0.1 0.077 12.8 0.1 1.4 1 0 0 1 1 1 0 Phi-29-like late genes activator (early protein GP4) Phage_integrase PF00589.17 gi|386001886|ref|YP_005920185.1| - 3e-27 95.3 0.0 4.5e-27 94.8 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|386001886|ref|YP_005920185.1| - 7.5e-06 26.1 1.4 3.4e-05 24.0 0.0 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain UPF0047 PF01894.12 gi|386001886|ref|YP_005920185.1| - 0.098 12.4 0.0 0.46 10.2 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0047 UPF0175 PF03683.8 gi|386001887|ref|YP_005920186.1| - 5.9e-14 51.2 0.3 6.5e-14 51.1 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) UPF0150 PF03681.10 gi|386001888|ref|YP_005920187.1| - 1.7e-09 37.1 0.1 2.2e-09 36.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3417 PF11897.3 gi|386001889|ref|YP_005920188.1| - 1.7e-31 108.5 0.8 4.5e-31 107.2 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.15 gi|386001889|ref|YP_005920188.1| - 2.8e-21 75.1 0.0 1.6e-15 56.0 0.0 4.1 3 1 0 3 3 3 3 Carbohydrate phosphorylase Peptidase_C14 PF00656.17 gi|386001889|ref|YP_005920188.1| - 4.1e-20 72.5 0.2 6.6e-20 71.8 0.2 1.3 1 0 0 1 1 1 1 Caspase domain Peptidase_C25 PF01364.13 gi|386001889|ref|YP_005920188.1| - 0.00065 18.7 0.0 0.0014 17.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase family C25 Peptidase_C13 PF01650.13 gi|386001889|ref|YP_005920188.1| - 0.0032 16.7 0.4 0.01 15.1 0.3 1.8 1 1 0 1 1 1 1 Peptidase C13 family Raptor_N PF14538.1 gi|386001889|ref|YP_005920188.1| - 0.011 15.5 0.0 0.028 14.2 0.0 1.7 1 0 0 1 1 1 0 Raptor N-terminal CASPase like domain tRNA-synt_1b PF00579.20 gi|386001890|ref|YP_005920189.1| - 3.9e-57 193.6 0.0 4.4e-57 193.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|386001890|ref|YP_005920189.1| - 7.4e-05 21.5 0.0 0.0071 15.0 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) FA_desaturase PF00487.19 gi|386001891|ref|YP_005920190.1| - 0.0068 15.8 0.1 0.0072 15.7 0.1 1.0 1 0 0 1 1 1 1 Fatty acid desaturase PetL PF05115.9 gi|386001891|ref|YP_005920190.1| - 0.69 9.8 11.0 1 9.3 0.4 2.2 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit VI (PetL) DUF1469 PF07332.6 gi|386001891|ref|YP_005920190.1| - 1.8 8.3 7.3 2.6 7.7 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF454 PF04304.8 gi|386001892|ref|YP_005920191.1| - 0.035 14.1 2.5 0.041 13.9 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF454) TctB PF07331.6 gi|386001892|ref|YP_005920191.1| - 0.037 13.6 2.7 0.036 13.7 1.8 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family UbiA PF01040.13 gi|386001892|ref|YP_005920191.1| - 0.082 12.1 4.6 0.085 12.0 3.2 1.0 1 0 0 1 1 1 0 UbiA prenyltransferase family TcpE PF12648.2 gi|386001892|ref|YP_005920191.1| - 0.27 11.4 2.5 0.29 11.3 1.7 1.1 1 0 0 1 1 1 0 TcpE family DUF3329 PF11808.3 gi|386001892|ref|YP_005920191.1| - 0.28 11.3 4.3 0.31 11.1 3.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3329) DUF1673 PF07895.6 gi|386001892|ref|YP_005920191.1| - 0.32 10.5 2.4 0.32 10.4 1.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF3040 PF11239.3 gi|386001892|ref|YP_005920191.1| - 0.43 10.6 2.9 0.42 10.6 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Herpes_US9 PF06072.6 gi|386001892|ref|YP_005920191.1| - 0.44 10.4 2.7 0.51 10.2 1.6 1.3 1 1 0 1 1 1 0 Alphaherpesvirus tegument protein US9 DUF3087 PF11286.3 gi|386001892|ref|YP_005920191.1| - 0.6 9.3 2.9 0.8 8.9 1.9 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3087) T2SM PF04612.7 gi|386001892|ref|YP_005920191.1| - 2.4 7.9 7.2 0.13 12.0 0.9 1.7 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M Herpes_LMP1 PF05297.6 gi|386001892|ref|YP_005920191.1| - 4.9 5.9 5.8 5.1 5.9 4.1 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) NTP_transf_3 PF12804.2 gi|386001893|ref|YP_005920192.1| - 4.4e-28 98.3 2.5 6.3e-28 97.8 1.8 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|386001893|ref|YP_005920192.1| - 0.006 16.1 0.0 0.0089 15.5 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|386001893|ref|YP_005920192.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase family 2 DUF2121 PF09894.4 gi|386001894|ref|YP_005920193.1| - 6.1e-46 156.1 0.0 8.2e-46 155.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) THF_DHG_CYH_C PF02882.14 gi|386001895|ref|YP_005920194.1| - 2.4e-62 208.7 3.4 3.1e-62 208.3 2.3 1.1 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|386001895|ref|YP_005920194.1| - 1.3e-35 121.9 0.0 2e-35 121.3 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SHMT PF00464.14 gi|386001896|ref|YP_005920195.1| - 1.6e-171 570.1 0.1 1.9e-171 569.8 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|386001896|ref|YP_005920195.1| - 2.5e-05 23.5 0.0 7.5e-05 22.0 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|386001896|ref|YP_005920195.1| - 0.00058 18.9 0.0 0.00099 18.1 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|386001896|ref|YP_005920195.1| - 0.011 14.7 1.3 0.027 13.5 0.9 1.5 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|386001896|ref|YP_005920195.1| - 0.038 12.2 0.0 0.057 11.6 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme TGT_C2 PF14810.1 gi|386001897|ref|YP_005920196.1| - 3e-28 97.4 0.1 9e-28 95.9 0.1 1.7 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|386001897|ref|YP_005920196.1| - 8.1e-17 60.7 0.9 1.5e-16 59.8 0.7 1.4 1 0 0 1 1 1 1 PUA domain SfsA PF03749.8 gi|386001897|ref|YP_005920196.1| - 0.12 11.7 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Sugar fermentation stimulation protein DUF3121 PF11319.3 gi|386001897|ref|YP_005920196.1| - 0.14 11.6 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3121) Aminotran_5 PF00266.14 gi|386001898|ref|YP_005920197.1| - 2.1e-86 290.0 0.0 2.4e-86 289.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|386001898|ref|YP_005920197.1| - 7.7e-11 41.6 0.0 1.1e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|386001898|ref|YP_005920197.1| - 0.00049 19.2 0.2 0.00079 18.5 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SMC_N PF02463.14 gi|386001899|ref|YP_005920198.1| - 4.4e-08 32.6 3.6 3.9e-07 29.5 2.5 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|386001899|ref|YP_005920198.1| - 0.0056 16.6 0.0 0.023 14.6 0.0 2.1 1 0 0 1 1 1 1 AAA ATPase domain Phos_pyr_kin PF08543.7 gi|386001899|ref|YP_005920198.1| - 0.027 13.6 0.2 0.047 12.8 0.2 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase AAA_21 PF13304.1 gi|386001899|ref|YP_005920198.1| - 0.083 12.8 50.3 0.052 13.5 2.6 4.8 2 2 0 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|386001899|ref|YP_005920198.1| - 1.3 9.3 9.1 19 5.5 5.4 3.5 2 1 0 2 2 2 0 ABC transporter Baculo_PEP_C PF04513.7 gi|386001899|ref|YP_005920198.1| - 4.4 7.1 6.8 2 8.2 1.0 3.1 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Ribosomal_L6e PF01159.14 gi|386001899|ref|YP_005920198.1| - 9.1 6.5 14.8 0.11 12.7 0.6 3.7 3 1 1 4 4 4 0 Ribosomal protein L6e YqhR PF11085.3 gi|386001900|ref|YP_005920199.1| - 0.54 9.7 2.8 0.64 9.5 1.9 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR DUF4536 PF15055.1 gi|386001900|ref|YP_005920199.1| - 0.56 10.3 0.0 0.56 10.3 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4536) UPF0060 PF02694.10 gi|386001900|ref|YP_005920199.1| - 0.62 10.1 6.4 0.94 9.5 4.4 1.3 1 1 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family YndJ PF14158.1 gi|386001900|ref|YP_005920199.1| - 7.1 5.6 10.0 16 4.4 7.0 1.6 1 1 0 1 1 1 0 YndJ-like protein Peripla_BP_2 PF01497.13 gi|386001901|ref|YP_005920200.1| - 3.3e-37 127.8 0.0 8.5e-37 126.5 0.0 1.7 1 1 0 1 1 1 1 Periplasmic binding protein FCD PF07729.7 gi|386001901|ref|YP_005920200.1| - 0.047 14.0 0.3 0.085 13.1 0.2 1.4 1 0 0 1 1 1 0 FCD domain SHOCT PF09851.4 gi|386001901|ref|YP_005920200.1| - 0.2 11.1 1.7 0.36 10.3 1.2 1.5 1 0 0 1 1 1 0 Short C-terminal domain Methyltransf_31 PF13847.1 gi|386001902|ref|YP_005920201.1| - 3.2e-13 49.5 0.0 3.7e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386001902|ref|YP_005920201.1| - 1.2e-10 41.9 0.0 1.9e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386001902|ref|YP_005920201.1| - 2.2e-08 34.4 0.0 5.5e-08 33.2 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386001902|ref|YP_005920201.1| - 3.2e-08 33.9 0.0 5.5e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|386001902|ref|YP_005920201.1| - 5.4e-08 32.1 0.0 7.4e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|386001902|ref|YP_005920201.1| - 1.3e-07 31.1 0.0 2.2e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|386001902|ref|YP_005920201.1| - 8.4e-07 29.2 0.0 1.6e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001902|ref|YP_005920201.1| - 2.6e-06 27.2 0.0 4.1e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|386001902|ref|YP_005920201.1| - 4e-06 26.5 0.0 5.6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein GidB PF02527.10 gi|386001902|ref|YP_005920201.1| - 6.1e-06 25.4 0.0 9e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PCMT PF01135.14 gi|386001902|ref|YP_005920201.1| - 4.7e-05 23.0 0.0 7e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|386001902|ref|YP_005920201.1| - 7.8e-05 21.9 0.0 0.00011 21.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.9 gi|386001902|ref|YP_005920201.1| - 7.9e-05 21.8 0.0 0.00011 21.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.8 gi|386001902|ref|YP_005920201.1| - 0.0001 21.5 0.0 0.0002 20.5 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|386001902|ref|YP_005920201.1| - 0.0011 18.1 0.0 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|386001902|ref|YP_005920201.1| - 0.0022 17.0 0.0 0.004 16.2 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase DREV PF05219.7 gi|386001902|ref|YP_005920201.1| - 0.0032 16.3 0.0 0.0047 15.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_26 PF13659.1 gi|386001902|ref|YP_005920201.1| - 0.0052 16.8 0.0 0.0067 16.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|386001902|ref|YP_005920201.1| - 0.0078 15.6 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Cons_hypoth95 PF03602.10 gi|386001902|ref|YP_005920201.1| - 0.008 15.5 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.6 gi|386001902|ref|YP_005920201.1| - 0.095 11.3 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Band_7 PF01145.20 gi|386001903|ref|YP_005920202.1| - 9e-38 129.9 2.7 1.1e-37 129.6 1.8 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|386001903|ref|YP_005920202.1| - 0.0019 17.7 0.2 0.0042 16.6 0.2 1.6 2 0 0 2 2 2 1 SPFH domain-Band 7 family AAA_16 PF13191.1 gi|386001903|ref|YP_005920202.1| - 0.28 11.1 2.2 0.73 9.7 0.3 1.9 1 1 1 2 2 2 0 AAA ATPase domain FecCD PF01032.13 gi|386001904|ref|YP_005920203.1| - 8.5e-90 300.7 33.4 1.1e-89 300.4 23.1 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|386001904|ref|YP_005920203.1| - 6.6e-05 22.3 23.0 6.6e-05 22.3 15.9 1.5 2 0 0 2 2 2 1 ABC 3 transport family ABC_tran PF00005.22 gi|386001905|ref|YP_005920204.1| - 8.4e-34 116.8 0.0 1.2e-33 116.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001905|ref|YP_005920204.1| - 2.8e-09 37.3 0.0 2.3e-06 27.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|386001905|ref|YP_005920204.1| - 4.7e-07 29.2 0.0 2.3e-05 23.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|386001905|ref|YP_005920204.1| - 4.9e-06 27.0 0.0 7.4e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|386001905|ref|YP_005920204.1| - 6.8e-06 25.3 0.1 0.0031 16.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|386001905|ref|YP_005920204.1| - 7.6e-06 25.3 0.0 2.6e-05 23.6 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|386001905|ref|YP_005920204.1| - 5e-05 23.3 0.0 7.7e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RNA12 PF10443.4 gi|386001905|ref|YP_005920204.1| - 0.00026 19.6 0.0 0.00043 18.8 0.0 1.3 1 0 0 1 1 1 1 RNA12 protein ABC_ATPase PF09818.4 gi|386001905|ref|YP_005920204.1| - 0.00068 18.3 0.1 0.49 8.9 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|386001905|ref|YP_005920204.1| - 0.0029 17.0 0.0 0.0033 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain Mg_chelatase PF01078.16 gi|386001905|ref|YP_005920204.1| - 0.0074 15.4 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|386001905|ref|YP_005920204.1| - 0.0079 15.9 0.0 0.018 14.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|386001905|ref|YP_005920204.1| - 0.0085 15.9 0.0 0.022 14.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|386001905|ref|YP_005920204.1| - 0.0091 16.1 1.2 0.11 12.6 0.8 2.1 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|386001905|ref|YP_005920204.1| - 0.01 15.5 0.1 0.019 14.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|386001905|ref|YP_005920204.1| - 0.013 15.2 0.1 0.075 12.6 0.0 2.0 2 0 0 2 2 2 0 NACHT domain MutS_V PF00488.16 gi|386001905|ref|YP_005920204.1| - 0.013 14.8 0.0 0.054 12.8 0.0 1.9 2 0 0 2 2 2 0 MutS domain V DUF258 PF03193.11 gi|386001905|ref|YP_005920204.1| - 0.018 14.1 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|386001905|ref|YP_005920204.1| - 0.022 14.4 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase ArgK PF03308.11 gi|386001905|ref|YP_005920204.1| - 0.024 13.4 0.0 0.04 12.7 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Zeta_toxin PF06414.7 gi|386001905|ref|YP_005920204.1| - 0.054 12.5 0.0 0.1 11.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|386001905|ref|YP_005920204.1| - 0.06 14.1 0.0 0.14 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|386001905|ref|YP_005920204.1| - 0.085 12.7 0.0 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|386001905|ref|YP_005920204.1| - 0.1 12.1 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain KH_2 PF07650.12 gi|386001905|ref|YP_005920204.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 KH domain NB-ARC PF00931.17 gi|386001905|ref|YP_005920204.1| - 0.11 11.3 0.5 0.35 9.6 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain MMR_HSR1 PF01926.18 gi|386001905|ref|YP_005920204.1| - 0.13 12.2 0.1 0.2 11.6 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_13 PF13166.1 gi|386001905|ref|YP_005920204.1| - 0.15 10.5 0.0 0.37 9.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|386001906|ref|YP_005920205.1| - 7.3e-28 97.5 0.0 1e-27 97.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386001906|ref|YP_005920205.1| - 4e-15 56.5 0.1 1e-12 48.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|386001906|ref|YP_005920205.1| - 1.2e-07 31.1 0.0 0.00032 19.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.1 gi|386001906|ref|YP_005920205.1| - 2.3e-05 23.0 0.0 0.021 13.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|386001906|ref|YP_005920205.1| - 3.6e-05 24.2 0.0 4.1e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|386001906|ref|YP_005920205.1| - 0.00026 20.4 0.0 0.00047 19.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|386001906|ref|YP_005920205.1| - 0.0013 19.5 0.2 0.0022 18.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|386001906|ref|YP_005920205.1| - 0.0027 17.1 0.1 0.61 9.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_19 PF13245.1 gi|386001906|ref|YP_005920205.1| - 0.0052 16.5 0.0 0.009 15.7 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|386001906|ref|YP_005920205.1| - 0.023 14.9 0.1 0.12 12.5 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|386001906|ref|YP_005920205.1| - 0.033 13.5 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|386001906|ref|YP_005920205.1| - 0.045 12.4 0.0 0.06 12.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Miro PF08477.8 gi|386001906|ref|YP_005920205.1| - 0.061 13.8 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|386001906|ref|YP_005920205.1| - 0.071 12.8 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|386001906|ref|YP_005920205.1| - 0.074 12.9 0.0 2.1 8.2 0.0 2.2 1 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|386001906|ref|YP_005920205.1| - 0.15 11.5 0.1 0.23 10.8 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|386001906|ref|YP_005920205.1| - 0.16 11.6 0.2 0.28 10.7 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|386001906|ref|YP_005920205.1| - 0.19 11.9 0.0 0.38 10.9 0.0 1.7 1 1 0 1 1 1 0 RNA helicase ABC2_membrane PF01061.19 gi|386001907|ref|YP_005920206.1| - 5e-18 65.0 26.8 7.6e-18 64.4 18.6 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|386001907|ref|YP_005920206.1| - 1.2e-11 44.2 29.3 1.2e-11 44.2 20.3 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein HEAT_2 PF13646.1 gi|386001908|ref|YP_005920207.1| - 7.2e-24 83.8 9.3 1.3e-11 44.5 0.4 3.5 2 1 2 4 4 4 3 HEAT repeats HEAT PF02985.17 gi|386001908|ref|YP_005920207.1| - 7.4e-10 38.0 2.9 0.26 11.4 0.0 5.1 5 0 0 5 5 5 3 HEAT repeat HEAT_EZ PF13513.1 gi|386001908|ref|YP_005920207.1| - 4.9e-08 33.2 6.1 0.00033 21.0 0.2 3.9 3 2 1 4 4 4 3 HEAT-like repeat F_actin_bind PF08919.5 gi|386001908|ref|YP_005920207.1| - 0.0063 16.2 0.9 0.098 12.3 0.1 2.8 2 0 0 2 2 2 1 F-actin binding ParD PF09386.5 gi|386001908|ref|YP_005920207.1| - 0.007 16.4 1.8 30 4.8 0.0 4.6 3 1 1 4 4 4 0 Antitoxin ParD GAD PF02938.9 gi|386001908|ref|YP_005920207.1| - 0.26 11.4 4.7 2.9 8.0 0.6 2.9 2 0 0 2 2 2 0 GAD domain Hemagglutinin PF00509.13 gi|386001908|ref|YP_005920207.1| - 0.33 9.0 2.7 0.52 8.3 1.9 1.2 1 0 0 1 1 1 0 Haemagglutinin SapB_1 PF05184.10 gi|386001908|ref|YP_005920207.1| - 3.6 7.5 0.0 3.6 7.5 0.0 4.2 4 1 1 5 5 5 0 Saposin-like type B, region 1 FTCD_C PF04961.7 gi|386001908|ref|YP_005920207.1| - 6.7 6.0 7.4 1.5 8.1 0.8 3.0 2 2 0 2 2 2 0 Formiminotransferase-cyclodeaminase NTP_transf_2 PF01909.18 gi|386001909|ref|YP_005920208.1| - 2.2e-09 37.5 0.4 2.7e-09 37.2 0.3 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|386001909|ref|YP_005920208.1| - 0.012 15.2 0.0 0.014 15.0 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 USP7_C2 PF14533.1 gi|386001909|ref|YP_005920208.1| - 0.088 12.2 0.0 0.11 11.9 0.0 1.0 1 0 0 1 1 1 0 Ubiquitin-specific protease C-terminal Methyltransf_18 PF12847.2 gi|386001910|ref|YP_005920209.1| - 4.5e-14 52.9 0.0 6.6e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386001910|ref|YP_005920209.1| - 1.5e-10 41.0 0.0 2.7e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386001910|ref|YP_005920209.1| - 4.9e-10 39.1 0.0 6.8e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|386001910|ref|YP_005920209.1| - 1.8e-09 37.0 0.0 2.5e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|386001910|ref|YP_005920209.1| - 5.8e-08 33.1 0.0 9.1e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|386001910|ref|YP_005920209.1| - 2.9e-07 29.8 0.0 4.1e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_25 PF13649.1 gi|386001910|ref|YP_005920209.1| - 5.2e-07 29.9 0.0 1.2e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386001910|ref|YP_005920209.1| - 1.7e-06 28.4 0.0 2.8e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|386001910|ref|YP_005920209.1| - 6.8e-06 25.5 0.0 1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|386001910|ref|YP_005920209.1| - 4.3e-05 23.5 0.0 7e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386001910|ref|YP_005920209.1| - 6e-05 22.2 0.0 8.9e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|386001910|ref|YP_005920209.1| - 0.00011 21.8 0.1 0.00015 21.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|386001910|ref|YP_005920209.1| - 0.00041 19.5 0.0 0.00059 19.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB tRNA_U5-meth_tr PF05958.6 gi|386001910|ref|YP_005920209.1| - 0.00045 19.0 0.0 0.00062 18.5 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DREV PF05219.7 gi|386001910|ref|YP_005920209.1| - 0.0025 16.7 0.0 0.0033 16.3 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase PrmA PF06325.8 gi|386001910|ref|YP_005920209.1| - 0.0028 16.8 0.1 0.0028 16.8 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|386001910|ref|YP_005920209.1| - 0.0041 16.1 0.0 0.0062 15.5 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Met_10 PF02475.11 gi|386001910|ref|YP_005920209.1| - 0.0069 15.9 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein CMAS PF02353.15 gi|386001910|ref|YP_005920209.1| - 0.02 13.9 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.10 gi|386001910|ref|YP_005920209.1| - 0.025 13.9 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 NAD_binding_10 PF13460.1 gi|386001910|ref|YP_005920209.1| - 0.035 14.1 0.0 0.057 13.4 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding Hce2 PF14856.1 gi|386001910|ref|YP_005920209.1| - 0.049 13.5 0.7 9.5 6.2 0.0 2.4 2 0 0 2 2 2 0 Pathogen effector; putative necrosis-inducing factor MetW PF07021.7 gi|386001910|ref|YP_005920209.1| - 0.081 12.2 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF938 PF06080.7 gi|386001910|ref|YP_005920209.1| - 0.11 11.9 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) SBP_bac_5 PF00496.17 gi|386001911|ref|YP_005920210.1| - 2.5e-76 256.9 0.0 3.2e-76 256.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle CxxCxxCC PF03692.10 gi|386001912|ref|YP_005920211.1| - 2e-14 53.8 0.1 3e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain BPD_transp_1 PF00528.17 gi|386001913|ref|YP_005920212.1| - 1.7e-37 128.7 9.9 1.7e-37 128.7 6.8 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|386001914|ref|YP_005920213.1| - 7.2e-18 64.7 12.2 7.2e-18 64.7 8.4 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|386001914|ref|YP_005920213.1| - 2.3e-06 26.8 2.1 3.7e-06 26.2 0.0 2.4 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|386001915|ref|YP_005920214.1| - 2.4e-60 202.8 0.0 2.6e-30 105.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|386001915|ref|YP_005920214.1| - 9.3e-27 93.1 0.2 6.6e-17 61.6 0.0 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|386001915|ref|YP_005920214.1| - 4.3e-24 85.9 0.0 9.8e-08 32.2 0.0 4.1 4 0 0 4 4 4 4 AAA domain SMC_N PF02463.14 gi|386001915|ref|YP_005920214.1| - 4.5e-10 39.1 0.2 5.1e-06 25.8 0.0 2.8 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|386001915|ref|YP_005920214.1| - 1.4e-09 38.1 5.3 0.00019 21.5 0.2 4.0 2 2 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|386001915|ref|YP_005920214.1| - 4.1e-07 29.4 0.0 0.26 10.2 0.0 4.0 4 0 0 4 4 4 1 AAA ATPase domain AAA_18 PF13238.1 gi|386001915|ref|YP_005920214.1| - 5.9e-07 29.8 0.1 0.055 13.7 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|386001915|ref|YP_005920214.1| - 1.3e-06 28.0 3.6 0.052 12.9 0.0 3.1 3 1 0 3 3 2 2 AAA domain AAA_29 PF13555.1 gi|386001915|ref|YP_005920214.1| - 3.8e-06 26.3 4.7 0.019 14.5 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|386001915|ref|YP_005920214.1| - 5.4e-06 26.5 6.3 0.017 15.1 0.4 3.0 2 2 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|386001915|ref|YP_005920214.1| - 5.8e-06 27.1 0.2 0.075 13.8 0.0 2.6 2 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|386001915|ref|YP_005920214.1| - 6.6e-06 25.3 0.1 0.038 13.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|386001915|ref|YP_005920214.1| - 3.6e-05 24.1 0.0 0.18 12.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|386001915|ref|YP_005920214.1| - 9.1e-05 22.6 0.5 0.17 12.0 0.0 3.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|386001915|ref|YP_005920214.1| - 0.00015 21.4 3.6 0.013 15.1 0.1 2.6 2 0 0 2 2 2 1 NACHT domain Zeta_toxin PF06414.7 gi|386001915|ref|YP_005920214.1| - 0.00019 20.5 0.3 0.0061 15.6 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.1 gi|386001915|ref|YP_005920214.1| - 0.00028 20.7 0.0 0.087 12.7 0.0 2.7 3 0 0 3 3 2 1 AAA domain SbcCD_C PF13558.1 gi|386001915|ref|YP_005920214.1| - 0.00032 20.5 0.5 0.92 9.4 0.1 3.7 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit APS_kinase PF01583.15 gi|386001915|ref|YP_005920214.1| - 0.00048 19.8 0.6 0.54 9.8 0.0 2.4 2 0 0 2 2 2 2 Adenylylsulphate kinase AAA_10 PF12846.2 gi|386001915|ref|YP_005920214.1| - 0.00068 19.1 5.5 0.048 13.0 0.1 3.5 4 1 0 4 4 4 1 AAA-like domain KaiC PF06745.8 gi|386001915|ref|YP_005920214.1| - 0.001 18.2 1.3 0.35 9.9 0.1 2.4 2 0 0 2 2 2 1 KaiC AAA_30 PF13604.1 gi|386001915|ref|YP_005920214.1| - 0.0013 18.3 0.9 4.5 6.7 0.0 3.7 4 0 0 4 4 4 0 AAA domain ATP-synt_ab PF00006.20 gi|386001915|ref|YP_005920214.1| - 0.0015 18.1 0.0 0.38 10.2 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.12 gi|386001915|ref|YP_005920214.1| - 0.0016 17.8 6.3 1.9 7.8 0.1 4.1 5 0 0 5 5 5 2 IstB-like ATP binding protein AAA_24 PF13479.1 gi|386001915|ref|YP_005920214.1| - 0.0017 17.9 2.3 0.38 10.3 0.1 2.5 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|386001915|ref|YP_005920214.1| - 0.0018 17.5 0.9 2 7.5 0.0 3.1 3 0 0 3 3 3 1 PhoH-like protein MobB PF03205.9 gi|386001915|ref|YP_005920214.1| - 0.002 17.8 2.6 0.17 11.5 0.2 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.13 gi|386001915|ref|YP_005920214.1| - 0.0022 17.5 0.0 0.63 9.5 0.0 2.6 3 0 0 3 3 2 1 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.9 gi|386001915|ref|YP_005920214.1| - 0.0023 17.6 2.6 0.92 9.2 0.1 3.5 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|386001915|ref|YP_005920214.1| - 0.0026 17.2 1.9 0.64 9.5 0.1 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation DEAD PF00270.24 gi|386001915|ref|YP_005920214.1| - 0.0033 16.9 0.0 2.5 7.5 0.0 2.6 2 2 0 2 2 2 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|386001915|ref|YP_005920214.1| - 0.0035 17.0 2.2 0.86 9.3 0.2 3.2 3 1 0 3 3 2 1 Part of AAA domain NB-ARC PF00931.17 gi|386001915|ref|YP_005920214.1| - 0.0051 15.6 2.6 0.094 11.5 0.1 3.2 4 0 0 4 4 4 1 NB-ARC domain Miro PF08477.8 gi|386001915|ref|YP_005920214.1| - 0.0052 17.2 0.4 1.9 9.0 0.0 2.7 2 0 0 2 2 2 1 Miro-like protein T2SE PF00437.15 gi|386001915|ref|YP_005920214.1| - 0.0058 15.5 0.3 0.34 9.7 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein UPF0079 PF02367.12 gi|386001915|ref|YP_005920214.1| - 0.0059 16.2 4.2 0.086 12.4 0.2 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase PF01078.16 gi|386001915|ref|YP_005920214.1| - 0.0061 15.7 0.8 0.61 9.2 0.0 2.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|386001915|ref|YP_005920214.1| - 0.0064 15.9 0.5 4.1 6.8 0.0 2.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family NTPase_1 PF03266.10 gi|386001915|ref|YP_005920214.1| - 0.0093 15.6 1.4 1.1 8.9 0.0 2.7 3 0 0 3 3 2 1 NTPase Pox_A32 PF04665.7 gi|386001915|ref|YP_005920214.1| - 0.01 15.1 2.6 1.8 7.8 0.1 2.4 2 0 0 2 2 2 0 Poxvirus A32 protein DUF87 PF01935.12 gi|386001915|ref|YP_005920214.1| - 0.015 15.1 3.0 1.2 8.8 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF87 Myosin_head PF00063.16 gi|386001915|ref|YP_005920214.1| - 0.015 13.3 0.2 0.56 8.1 0.0 2.1 2 0 0 2 2 2 0 Myosin head (motor domain) MMR_HSR1 PF01926.18 gi|386001915|ref|YP_005920214.1| - 0.019 14.8 0.1 7.8 6.4 0.0 2.7 3 0 0 3 3 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|386001915|ref|YP_005920214.1| - 0.03 14.4 0.1 2.7 8.1 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.1 gi|386001915|ref|YP_005920214.1| - 0.033 14.1 0.4 9.2 6.1 0.2 2.5 2 0 0 2 2 2 0 AAA domain Septin PF00735.13 gi|386001915|ref|YP_005920214.1| - 0.039 12.9 0.5 1.2 8.1 0.0 2.2 2 0 0 2 2 2 0 Septin DUF2075 PF09848.4 gi|386001915|ref|YP_005920214.1| - 0.13 11.2 0.0 1.7 7.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PEPCK_ATP PF01293.15 gi|386001915|ref|YP_005920214.1| - 0.18 10.2 0.5 7.2 5.0 0.0 2.1 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase AAA_13 PF13166.1 gi|386001915|ref|YP_005920214.1| - 0.25 9.7 1.5 2.8 6.3 0.0 3.0 4 0 0 4 4 4 0 AAA domain Sigma54_activat PF00158.21 gi|386001915|ref|YP_005920214.1| - 0.32 10.4 2.7 2.9 7.3 0.1 2.8 3 0 0 3 3 2 0 Sigma-54 interaction domain CbiA PF01656.18 gi|386001915|ref|YP_005920214.1| - 0.35 10.2 4.4 3.4 7.0 0.2 2.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Cuticle_1 PF08140.6 gi|386001915|ref|YP_005920214.1| - 0.93 9.3 3.4 11 5.9 0.0 3.5 4 0 0 4 4 3 0 Crustacean cuticle protein repeat Nitroreductase PF00881.19 gi|386001917|ref|YP_005920216.1| - 1.1e-11 44.8 0.0 0.0001 22.1 0.0 2.5 2 1 0 2 2 2 2 Nitroreductase family Rhodanese PF00581.15 gi|386001918|ref|YP_005920217.1| - 7.3e-15 55.3 0.0 1e-14 54.7 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain DUF3417 PF11897.3 gi|386001919|ref|YP_005920218.1| - 2.8e-32 111.1 0.0 9.8e-32 109.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.15 gi|386001919|ref|YP_005920218.1| - 9.9e-23 79.9 0.0 5.4e-10 37.8 0.0 3.3 3 0 0 3 3 3 3 Carbohydrate phosphorylase Cpn60_TCP1 PF00118.19 gi|386001920|ref|YP_005920219.1| - 3e-170 567.0 13.8 3.4e-170 566.8 9.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family HK97-gp10_like PF04883.7 gi|386001920|ref|YP_005920219.1| - 0.00066 20.5 0.3 0.73 10.8 0.3 3.8 3 2 0 3 3 3 2 Bacteriophage HK97-gp10, putative tail-component TrwC PF08751.6 gi|386001920|ref|YP_005920219.1| - 0.091 12.1 0.0 0.15 11.4 0.0 1.5 1 1 0 1 1 1 0 TrwC relaxase Spt5-NGN PF03439.8 gi|386001921|ref|YP_005920220.1| - 1.5e-16 59.8 0.1 2.5e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|386001921|ref|YP_005920220.1| - 5.6e-07 29.0 0.9 5.9e-05 22.6 0.1 2.4 2 0 0 2 2 2 2 KOW motif NusG PF02357.14 gi|386001921|ref|YP_005920220.1| - 0.052 13.8 0.0 0.13 12.5 0.0 1.6 2 0 0 2 2 2 0 Transcription termination factor nusG Ribosomal_L11_N PF03946.9 gi|386001922|ref|YP_005920221.1| - 8e-25 86.0 0.4 1.3e-24 85.4 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|386001922|ref|YP_005920221.1| - 7.8e-21 73.9 1.4 1.3e-20 73.3 1.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.16 gi|386001923|ref|YP_005920222.1| - 4.6e-46 156.9 0.0 5.4e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family SIMPL PF04402.9 gi|386001923|ref|YP_005920222.1| - 0.05 13.4 0.7 0.082 12.7 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF541) Ribosomal_L10 PF00466.15 gi|386001924|ref|YP_005920223.1| - 1.7e-20 72.7 0.1 3.1e-20 71.9 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|386001924|ref|YP_005920223.1| - 6e-05 23.3 8.2 6e-05 23.3 5.7 2.3 2 0 0 2 2 2 1 60s Acidic ribosomal protein MazG PF03819.12 gi|386001924|ref|YP_005920223.1| - 0.023 14.6 0.1 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain Ribosomal_60s PF00428.14 gi|386001925|ref|YP_005920224.1| - 1.4e-17 63.8 16.3 1.7e-17 63.6 11.3 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein MelC1 PF06236.6 gi|386001925|ref|YP_005920224.1| - 5 7.1 8.9 3.3 7.7 4.2 1.8 2 0 0 2 2 2 0 Tyrosinase co-factor MelC1 Cache_3 PF14827.1 gi|386001926|ref|YP_005920225.1| - 0.046 13.6 0.1 0.23 11.3 0.0 2.2 3 0 0 3 3 3 0 Sensory domain of two-component sensor kinase PAS_9 PF13426.1 gi|386001926|ref|YP_005920225.1| - 0.11 12.8 0.1 0.57 10.5 0.0 2.2 2 2 0 2 2 2 0 PAS domain MC1 PF05854.6 gi|386001927|ref|YP_005920226.1| - 3.7e-43 145.4 0.6 4.1e-43 145.2 0.4 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 APS_kinase PF01583.15 gi|386001928|ref|YP_005920227.1| - 1.2e-28 99.7 0.0 1.8e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|386001928|ref|YP_005920227.1| - 5e-15 55.6 0.0 7.2e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|386001928|ref|YP_005920227.1| - 8.1e-09 36.3 0.0 1.3e-08 35.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|386001928|ref|YP_005920227.1| - 1.1e-08 34.6 0.0 1.3e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|386001928|ref|YP_005920227.1| - 2.6e-07 30.9 0.0 4.2e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|386001928|ref|YP_005920227.1| - 0.00018 20.6 0.0 0.00041 19.4 0.0 1.5 1 1 0 1 1 1 1 Zeta toxin AAA PF00004.24 gi|386001928|ref|YP_005920227.1| - 0.00021 21.5 0.7 0.0028 17.8 0.3 2.0 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|386001928|ref|YP_005920227.1| - 0.00025 21.0 0.0 0.00035 20.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain ArgK PF03308.11 gi|386001928|ref|YP_005920227.1| - 0.00043 19.1 0.1 0.00073 18.3 0.0 1.3 1 0 0 1 1 1 1 ArgK protein CPT PF07931.7 gi|386001928|ref|YP_005920227.1| - 0.0014 18.3 0.0 0.011 15.3 0.0 2.1 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_28 PF13521.1 gi|386001928|ref|YP_005920227.1| - 0.0019 18.1 0.6 0.0092 15.9 0.1 1.8 1 1 1 2 2 2 1 AAA domain 6PF2K PF01591.13 gi|386001928|ref|YP_005920227.1| - 0.0019 17.2 0.1 0.012 14.7 0.1 1.9 1 1 0 1 1 1 1 6-phosphofructo-2-kinase NTPase_1 PF03266.10 gi|386001928|ref|YP_005920227.1| - 0.0032 17.2 0.1 0.0051 16.5 0.0 1.3 1 0 0 1 1 1 1 NTPase MobB PF03205.9 gi|386001928|ref|YP_005920227.1| - 0.0085 15.7 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|386001928|ref|YP_005920227.1| - 0.027 14.6 0.1 0.048 13.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|386001928|ref|YP_005920227.1| - 0.031 14.0 1.6 0.085 12.6 1.1 1.8 1 1 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|386001928|ref|YP_005920227.1| - 0.033 13.8 0.3 0.063 12.9 0.2 1.4 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|386001928|ref|YP_005920227.1| - 0.048 13.8 0.0 0.087 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Thymidylate_kin PF02223.12 gi|386001928|ref|YP_005920227.1| - 0.067 12.5 0.1 0.12 11.7 0.1 1.4 1 1 0 1 1 1 0 Thymidylate kinase AAA_30 PF13604.1 gi|386001928|ref|YP_005920227.1| - 0.071 12.6 0.2 0.19 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|386001928|ref|YP_005920227.1| - 0.084 12.4 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|386001928|ref|YP_005920227.1| - 0.13 11.9 0.2 0.27 10.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF815 PF05673.8 gi|386001928|ref|YP_005920227.1| - 0.18 10.6 0.1 11 4.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) tRNA_int_endo PF01974.12 gi|386001930|ref|YP_005920229.1| - 4.4e-49 164.1 3.6 5.1e-24 83.8 0.9 2.6 3 0 0 3 3 3 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|386001930|ref|YP_005920229.1| - 1.8e-40 136.3 0.2 4.6e-21 74.1 0.0 2.6 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|386001930|ref|YP_005920229.1| - 0.0015 17.9 0.0 0.79 9.2 0.0 2.5 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term TPR_11 PF13414.1 gi|386001931|ref|YP_005920230.1| - 2.3e-22 78.4 8.7 9.1e-11 41.2 0.2 2.7 1 1 2 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|386001931|ref|YP_005920230.1| - 4.6e-17 60.4 3.6 3.5e-06 26.5 0.0 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|386001931|ref|YP_005920230.1| - 1.3e-15 56.2 0.1 3.5e-05 23.2 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001931|ref|YP_005920230.1| - 1.7e-11 44.4 16.6 8.8e-06 26.2 3.3 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001931|ref|YP_005920230.1| - 7.2e-11 42.2 15.3 8.1e-06 26.0 0.6 2.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001931|ref|YP_005920230.1| - 9.9e-11 41.2 14.5 0.0014 19.1 1.7 3.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386001931|ref|YP_005920230.1| - 1.8e-08 34.0 9.6 4.6e-08 32.8 3.9 2.2 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386001931|ref|YP_005920230.1| - 5.5e-07 28.9 0.0 0.46 10.3 0.0 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001931|ref|YP_005920230.1| - 1.4e-06 28.0 0.5 4 7.8 0.0 4.3 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001931|ref|YP_005920230.1| - 3.4e-06 26.4 2.2 0.062 13.1 0.1 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001931|ref|YP_005920230.1| - 6.4e-06 26.0 6.8 0.17 11.8 0.3 3.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|386001931|ref|YP_005920230.1| - 0.00057 19.0 2.6 0.00074 18.6 1.8 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386001931|ref|YP_005920230.1| - 0.0012 19.1 3.0 8.9 7.0 0.0 4.1 4 0 0 4 4 4 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|386001931|ref|YP_005920230.1| - 0.0042 17.1 0.2 1.9 8.6 0.0 2.2 1 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.3 gi|386001931|ref|YP_005920230.1| - 0.0056 15.5 0.1 0.028 13.1 0.1 1.7 1 1 1 2 2 2 1 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|386001931|ref|YP_005920230.1| - 0.2 11.5 2.1 2.7 7.9 0.1 2.8 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain EF1_GNE PF00736.14 gi|386001932|ref|YP_005920231.1| - 9.3e-20 70.1 0.0 9.8e-20 70.0 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain AA_kinase PF00696.23 gi|386001933|ref|YP_005920232.1| - 2.6e-15 56.6 0.2 1.3e-06 28.1 0.0 2.1 1 1 1 2 2 2 2 Amino acid kinase family NUDIX PF00293.23 gi|386001934|ref|YP_005920233.1| - 2.2e-11 43.5 0.0 2.5e-11 43.3 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain tRNA-synt_1c PF00749.16 gi|386001935|ref|YP_005920234.1| - 6.5e-59 199.1 0.0 7.8e-59 198.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|386001935|ref|YP_005920234.1| - 3.6e-20 72.3 0.0 5.5e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain UbiA PF01040.13 gi|386001937|ref|YP_005920236.1| - 3.3e-44 151.0 24.6 4.4e-44 150.6 17.0 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family MpPF26 PF07666.6 gi|386001937|ref|YP_005920236.1| - 5.2 6.9 6.8 1 9.2 0.2 2.5 3 0 0 3 3 3 0 M penetrans paralogue family 26 Glycos_transf_3 PF00591.16 gi|386001939|ref|YP_005920238.1| - 1.1e-58 198.6 0.0 2e-58 197.7 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|386001939|ref|YP_005920238.1| - 2.8e-16 58.8 0.0 6e-16 57.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain ADH_N PF08240.7 gi|386001940|ref|YP_005920239.1| - 8.2e-26 89.9 0.8 1.7e-25 88.8 0.6 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|386001940|ref|YP_005920239.1| - 1.5e-09 37.5 0.0 2.1e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase FAD_binding_2 PF00890.19 gi|386001940|ref|YP_005920239.1| - 0.00093 18.1 0.3 0.0016 17.3 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|386001940|ref|YP_005920239.1| - 0.025 13.0 0.2 0.035 12.5 0.1 1.1 1 0 0 1 1 1 0 HI0933-like protein tRNA_deacylase PF04414.7 gi|386001941|ref|YP_005920240.1| - 1.1e-60 204.4 0.0 1.4e-60 204.0 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase MarR PF01047.17 gi|386001942|ref|YP_005920241.1| - 7.4e-06 25.5 0.0 0.075 12.7 0.0 2.4 2 0 0 2 2 2 2 MarR family MarR_2 PF12802.2 gi|386001942|ref|YP_005920241.1| - 4.5e-05 23.0 0.1 0.83 9.3 0.0 3.2 3 0 0 3 3 3 2 MarR family TrmB PF01978.14 gi|386001942|ref|YP_005920241.1| - 0.0014 18.3 0.1 0.95 9.2 0.0 3.2 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|386001942|ref|YP_005920241.1| - 0.0044 16.6 0.0 1.6 8.4 0.0 2.4 2 0 0 2 2 2 2 Homeodomain-like domain HTH_3 PF01381.17 gi|386001942|ref|YP_005920241.1| - 0.0051 16.6 0.0 3.3 7.6 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix HTH_24 PF13412.1 gi|386001942|ref|YP_005920241.1| - 0.012 15.0 0.0 0.41 10.0 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|386001942|ref|YP_005920241.1| - 0.051 13.1 0.0 0.75 9.3 0.0 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_26 PF13443.1 gi|386001942|ref|YP_005920241.1| - 0.072 13.2 0.0 0.62 10.2 0.0 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF603 PF04645.7 gi|386001942|ref|YP_005920241.1| - 0.1 12.5 0.0 4.4 7.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF603 HTH_28 PF13518.1 gi|386001942|ref|YP_005920241.1| - 0.14 12.1 0.0 23 5.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Lactamase_B PF00753.22 gi|386001943|ref|YP_005920242.1| - 1.6e-15 57.2 0.2 1.5e-13 50.8 0.2 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|386001943|ref|YP_005920242.1| - 0.0012 18.4 0.0 0.0029 17.1 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|386001943|ref|YP_005920242.1| - 0.0015 18.2 0.0 0.0022 17.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lyase_1 PF00206.15 gi|386001944|ref|YP_005920243.1| - 6.8e-50 170.0 0.1 1.3e-49 169.0 0.0 1.5 2 0 0 2 2 2 1 Lyase ADSL_C PF10397.4 gi|386001944|ref|YP_005920243.1| - 9.4e-27 92.8 0.6 2.1e-26 91.7 0.4 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus FumaraseC_C PF10415.4 gi|386001944|ref|YP_005920243.1| - 0.038 14.0 0.1 0.19 11.7 0.1 2.3 1 0 0 1 1 1 0 Fumarase C C-terminus AMP_N PF05195.11 gi|386001944|ref|YP_005920243.1| - 0.12 11.7 0.0 0.38 10.1 0.0 1.8 2 0 0 2 2 2 0 Aminopeptidase P, N-terminal domain 5_nucleotid_C PF02872.13 gi|386001945|ref|YP_005920244.1| - 2.5e-38 131.4 0.0 3.9e-38 130.8 0.0 1.3 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|386001945|ref|YP_005920244.1| - 2.7e-09 36.7 0.0 8.6e-09 35.0 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|386001945|ref|YP_005920244.1| - 0.00023 21.0 0.0 0.0006 19.6 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain CitMHS PF03600.11 gi|386001946|ref|YP_005920245.1| - 1.7e-34 118.9 29.4 1.9e-31 108.9 14.1 2.0 1 1 1 2 2 2 2 Citrate transporter YcaO PF02624.11 gi|386001947|ref|YP_005920246.1| - 4.9e-97 325.3 1.0 1.8e-96 323.5 0.4 1.8 2 0 0 2 2 2 1 YcaO-like family TfuA PF07812.7 gi|386001948|ref|YP_005920247.1| - 3e-45 152.5 0.1 5.3e-45 151.7 0.1 1.4 1 0 0 1 1 1 1 TfuA-like protein ThiS PF02597.15 gi|386001949|ref|YP_005920248.1| - 8.2e-18 64.6 0.0 9.1e-18 64.4 0.0 1.0 1 0 0 1 1 1 1 ThiS family ThiF PF00899.16 gi|386001950|ref|YP_005920249.1| - 1.1e-41 141.8 0.0 1.6e-41 141.2 0.0 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|386001950|ref|YP_005920249.1| - 9.1e-16 57.2 0.0 1.5e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|386001950|ref|YP_005920249.1| - 0.0013 18.8 0.0 0.0024 17.9 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|386001950|ref|YP_005920249.1| - 0.021 13.8 0.2 0.03 13.3 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase adh_short PF00106.20 gi|386001950|ref|YP_005920249.1| - 0.034 14.0 1.0 0.069 13.0 0.6 1.6 1 1 0 1 1 1 0 short chain dehydrogenase Pyr_redox_3 PF13738.1 gi|386001950|ref|YP_005920249.1| - 0.11 12.4 0.1 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|386001950|ref|YP_005920249.1| - 0.12 11.7 0.1 0.19 11.0 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1890 PF09001.6 gi|386001951|ref|YP_005920250.1| - 7.5e-50 168.5 0.0 8.4e-50 168.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) DUF1894 PF08979.6 gi|386001952|ref|YP_005920251.1| - 1.1e-37 127.9 0.0 1.2e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) ThiS PF02597.15 gi|386001953|ref|YP_005920252.1| - 1.3e-15 57.5 0.1 1.5e-15 57.3 0.1 1.1 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|386001953|ref|YP_005920252.1| - 0.056 13.2 0.0 0.084 12.7 0.0 1.3 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I UreE_N PF02814.10 gi|386001953|ref|YP_005920252.1| - 0.069 12.6 0.0 0.64 9.5 0.0 2.0 2 0 0 2 2 2 0 UreE urease accessory protein, N-terminal domain TrkA_C PF02080.16 gi|386001953|ref|YP_005920252.1| - 0.11 12.1 0.2 0.18 11.3 0.1 1.6 1 1 0 1 1 1 0 TrkA-C domain SLBB PF10531.4 gi|386001953|ref|YP_005920252.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.6 1 1 0 1 1 1 0 SLBB domain MoaE PF02391.12 gi|386001954|ref|YP_005920253.1| - 1e-27 96.2 0.2 1.2e-27 96.0 0.2 1.1 1 0 0 1 1 1 1 MoaE protein GvpD PF07088.6 gi|386001955|ref|YP_005920254.1| - 9.4e-41 139.6 0.0 1.3e-39 135.8 0.0 1.9 1 1 0 2 2 2 1 GvpD gas vesicle protein KaiC PF06745.8 gi|386001955|ref|YP_005920254.1| - 4.8e-13 48.7 0.1 6.8e-12 44.9 0.0 2.2 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|386001955|ref|YP_005920254.1| - 3.7e-06 26.4 0.0 1.5e-05 24.4 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|386001955|ref|YP_005920254.1| - 5.5e-05 23.2 0.0 0.00013 22.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|386001955|ref|YP_005920254.1| - 0.00032 20.8 0.0 0.001 19.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|386001955|ref|YP_005920254.1| - 0.0011 18.6 0.0 0.0029 17.2 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain ATP-synt_ab PF00006.20 gi|386001955|ref|YP_005920254.1| - 0.0019 17.7 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_11 PF13086.1 gi|386001955|ref|YP_005920254.1| - 0.0034 16.9 0.0 0.0052 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|386001955|ref|YP_005920254.1| - 0.0038 16.1 0.0 0.18 10.6 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain DUF2075 PF09848.4 gi|386001955|ref|YP_005920254.1| - 0.0038 16.2 0.0 0.0065 15.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA PF00004.24 gi|386001955|ref|YP_005920254.1| - 0.0045 17.1 0.0 0.012 15.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|386001955|ref|YP_005920254.1| - 0.008 16.4 0.0 0.018 15.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|386001955|ref|YP_005920254.1| - 0.0092 15.4 0.0 0.048 13.0 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|386001955|ref|YP_005920254.1| - 0.012 15.5 0.0 0.032 14.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|386001955|ref|YP_005920254.1| - 0.02 13.7 0.0 0.032 13.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|386001955|ref|YP_005920254.1| - 0.028 15.2 0.1 0.09 13.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|386001955|ref|YP_005920254.1| - 0.028 13.0 0.0 0.048 12.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TIP49 PF06068.8 gi|386001955|ref|YP_005920254.1| - 0.035 12.8 0.0 0.055 12.1 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus NACHT PF05729.7 gi|386001955|ref|YP_005920254.1| - 0.042 13.4 0.0 0.078 12.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|386001955|ref|YP_005920254.1| - 0.046 14.0 0.0 0.08 13.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.1 gi|386001955|ref|YP_005920254.1| - 0.083 12.4 0.7 0.42 10.1 0.1 2.3 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|386001955|ref|YP_005920254.1| - 0.084 12.5 0.1 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 NTPase FtsK_SpoIIIE PF01580.13 gi|386001955|ref|YP_005920254.1| - 0.11 11.9 0.0 2.8 7.3 0.0 2.4 2 1 0 2 2 2 0 FtsK/SpoIIIE family FaeA PF04703.7 gi|386001956|ref|YP_005920255.1| - 8.9e-05 22.5 0.0 0.0002 21.4 0.0 1.6 1 0 0 1 1 1 1 FaeA-like protein HTH_IclR PF09339.5 gi|386001956|ref|YP_005920255.1| - 0.001 18.6 0.0 0.0034 16.9 0.0 1.8 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|386001956|ref|YP_005920255.1| - 0.002 17.4 0.0 0.0044 16.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|386001956|ref|YP_005920255.1| - 0.0049 16.4 0.0 0.014 15.0 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain LacI PF00356.16 gi|386001956|ref|YP_005920255.1| - 0.011 15.2 1.8 0.062 12.9 0.7 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_11 PF08279.7 gi|386001956|ref|YP_005920255.1| - 0.012 15.2 0.1 0.048 13.3 0.0 1.9 2 0 0 2 2 2 0 HTH domain TrmB PF01978.14 gi|386001956|ref|YP_005920255.1| - 0.024 14.3 0.4 0.055 13.1 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|386001956|ref|YP_005920255.1| - 0.056 13.4 0.6 0.16 11.9 0.1 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain LZ_Tnp_IS481 PF13011.1 gi|386001956|ref|YP_005920255.1| - 0.067 13.5 0.0 0.2 12.0 0.0 1.8 2 1 0 2 2 2 0 leucine-zipper of insertion element IS481 HTH_17 PF12728.2 gi|386001956|ref|YP_005920255.1| - 0.073 13.3 0.1 0.26 11.5 0.1 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain MtrA PF04208.9 gi|386001957|ref|YP_005920256.1| - 4.2e-60 202.1 0.0 5.2e-60 201.8 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A TPR_2 PF07719.12 gi|386001958|ref|YP_005920257.1| - 2.7e-28 95.5 0.2 7.8e-06 25.4 0.0 6.8 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386001958|ref|YP_005920257.1| - 7.3e-26 89.6 0.1 4.5e-09 35.8 0.0 4.5 3 2 2 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|386001958|ref|YP_005920257.1| - 2.2e-22 77.6 0.0 5.8e-06 25.6 0.0 6.5 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386001958|ref|YP_005920257.1| - 2.5e-22 78.9 4.3 2.3e-08 34.4 1.7 4.3 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386001958|ref|YP_005920257.1| - 2.5e-19 67.9 13.0 2.8e-05 24.3 0.3 6.8 3 3 4 7 7 7 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386001958|ref|YP_005920257.1| - 1.9e-18 66.5 0.1 1.6e-08 34.7 0.0 4.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386001958|ref|YP_005920257.1| - 1.4e-15 55.7 0.0 0.081 12.7 0.0 5.7 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386001958|ref|YP_005920257.1| - 2.7e-14 52.7 8.6 0.0017 18.2 0.0 4.5 3 2 1 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386001958|ref|YP_005920257.1| - 1.1e-12 47.6 0.8 3.1e-05 23.8 0.0 5.4 4 2 1 5 5 5 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386001958|ref|YP_005920257.1| - 2.4e-10 39.7 0.0 0.00048 20.1 0.0 5.4 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386001958|ref|YP_005920257.1| - 7.7e-09 35.4 0.8 1.4 9.5 0.1 6.2 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386001958|ref|YP_005920257.1| - 1.3e-06 27.7 4.3 5.2 7.1 0.0 5.9 7 0 0 7 7 6 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|386001958|ref|YP_005920257.1| - 6.9e-05 22.6 0.2 2.6 7.8 0.0 3.4 3 0 0 3 3 3 1 Domain of Unknown Function (DUF3856) Apc3 PF12895.2 gi|386001958|ref|YP_005920257.1| - 0.00015 21.8 0.0 1.1 9.4 0.0 4.0 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.9 gi|386001958|ref|YP_005920257.1| - 0.0002 21.4 5.8 0.058 13.8 0.4 4.8 5 0 0 5 5 4 1 Tetratricopeptide repeat MIT PF04212.13 gi|386001958|ref|YP_005920257.1| - 0.00025 20.8 1.8 0.07 13.0 0.0 3.5 3 2 0 3 3 3 1 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.1 gi|386001958|ref|YP_005920257.1| - 0.00027 20.7 0.1 2.9 7.8 0.0 4.4 6 0 0 6 6 6 1 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|386001958|ref|YP_005920257.1| - 0.00096 19.0 17.3 2.6 8.0 0.0 7.1 8 0 0 8 8 8 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|386001958|ref|YP_005920257.1| - 0.013 15.7 0.0 6.3 7.0 0.0 3.4 2 1 2 4 4 4 0 Alkyl sulfatase dimerisation TPR_20 PF14561.1 gi|386001958|ref|YP_005920257.1| - 0.016 15.2 0.0 0.21 11.7 0.0 2.7 2 1 1 3 3 3 0 Tetratricopeptide repeat NAD_binding_10 PF13460.1 gi|386001958|ref|YP_005920257.1| - 0.033 14.1 0.0 0.22 11.5 0.0 2.0 1 1 0 1 1 1 0 NADH(P)-binding ChAPs PF09295.5 gi|386001958|ref|YP_005920257.1| - 0.12 11.1 0.0 0.85 8.3 0.0 2.1 2 0 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) SHNi-TPR PF10516.4 gi|386001958|ref|YP_005920257.1| - 0.28 10.4 1.4 27 4.1 0.0 3.1 3 0 0 3 3 3 0 SHNi-TPR PPR PF01535.15 gi|386001958|ref|YP_005920257.1| - 5.1 7.3 6.4 6.1 7.0 0.0 4.2 6 0 0 6 6 5 0 PPR repeat UvrB PF12344.3 gi|386001959|ref|YP_005920258.1| - 4.6e-20 70.8 0.3 1.5e-19 69.2 0.2 2.0 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|386001959|ref|YP_005920258.1| - 5.9e-15 54.8 0.1 1.2e-14 53.9 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|386001959|ref|YP_005920258.1| - 7e-13 48.8 0.0 7.7e-12 45.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|386001959|ref|YP_005920258.1| - 2e-09 36.6 2.5 7.5e-09 34.8 1.7 2.1 1 0 0 1 1 1 1 UvrB/uvrC motif DEAD PF00270.24 gi|386001959|ref|YP_005920258.1| - 2.7e-06 26.9 0.0 0.00022 20.7 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|386001959|ref|YP_005920258.1| - 0.00026 20.6 0.2 0.02 14.4 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|386001959|ref|YP_005920258.1| - 0.0006 19.5 0.2 0.012 15.3 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain Zot PF05707.7 gi|386001959|ref|YP_005920258.1| - 0.016 14.7 0.0 3.5 7.0 0.0 2.5 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) UB2H PF14814.1 gi|386001959|ref|YP_005920258.1| - 0.041 13.6 0.1 0.14 11.9 0.0 2.0 1 1 0 1 1 1 0 Bifunctional transglycosylase second domain DUF87 PF01935.12 gi|386001959|ref|YP_005920258.1| - 0.058 13.1 0.2 0.18 11.6 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function DUF87 Kinesin PF00225.18 gi|386001959|ref|YP_005920258.1| - 0.084 11.5 0.0 0.14 10.8 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain SRP54 PF00448.17 gi|386001959|ref|YP_005920258.1| - 0.14 11.6 1.0 0.23 10.8 0.2 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CMD PF02627.15 gi|386001960|ref|YP_005920259.1| - 4.1e-13 48.9 0.0 4.6e-13 48.8 0.0 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family AdoHcyase PF05221.12 gi|386001960|ref|YP_005920259.1| - 0.047 12.6 0.0 0.049 12.5 0.0 1.1 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase DUF1454 PF07305.7 gi|386001960|ref|YP_005920259.1| - 0.061 12.4 0.0 0.077 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1454) Na_H_Exchanger PF00999.16 gi|386001961|ref|YP_005920260.1| - 9.3e-70 235.0 55.1 1.3e-69 234.5 38.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|386001961|ref|YP_005920260.1| - 1.9e-24 85.9 0.4 3.9e-24 84.8 0.3 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|386001961|ref|YP_005920260.1| - 1.6e-16 59.6 2.5 1.9e-16 59.4 0.1 2.3 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|386001961|ref|YP_005920260.1| - 0.028 14.4 0.4 0.054 13.4 0.3 1.5 1 0 0 1 1 1 0 NADH(P)-binding NAD_binding_7 PF13241.1 gi|386001961|ref|YP_005920260.1| - 0.03 14.5 0.3 0.069 13.4 0.2 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Radical_SAM PF04055.16 gi|386001962|ref|YP_005920261.1| - 9.4e-29 100.7 0.1 2e-28 99.6 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|386001962|ref|YP_005920261.1| - 1.2e-10 41.5 0.8 2.8e-10 40.3 0.6 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|386001962|ref|YP_005920261.1| - 8.7e-09 35.6 0.0 1.4e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|386001962|ref|YP_005920261.1| - 1.1e-07 31.8 0.0 2.3e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|386001963|ref|YP_005920262.1| - 3e-48 164.3 3.4 5.5e-48 163.4 0.5 2.5 3 0 0 3 3 3 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.10 gi|386001963|ref|YP_005920262.1| - 2.9e-47 160.8 1.6 3.7e-47 160.5 0.3 1.7 2 0 0 2 2 2 1 Uroporphyrinogen-III synthase HemD Porphobil_deam PF01379.15 gi|386001964|ref|YP_005920263.1| - 3.1e-60 202.7 0.0 4e-60 202.3 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|386001964|ref|YP_005920263.1| - 9.5e-11 41.6 0.4 1.8e-10 40.7 0.3 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.16 gi|386001965|ref|YP_005920264.1| - 6.1e-64 216.0 0.0 8.2e-64 215.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III DUF111 PF01969.12 gi|386001966|ref|YP_005920265.1| - 3.9e-130 434.0 0.1 4.5e-130 433.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Molybdopterin PF00384.17 gi|386001967|ref|YP_005920266.1| - 5.3e-84 282.4 0.0 6.3e-84 282.1 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|386001967|ref|YP_005920266.1| - 3.7e-31 107.1 0.0 8.1e-31 106.0 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|386001967|ref|YP_005920266.1| - 2.6e-20 71.9 0.5 2.6e-20 71.9 0.4 2.4 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.1 gi|386001967|ref|YP_005920266.1| - 1.6e-18 66.3 0.1 4.6e-18 64.7 0.0 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|386001967|ref|YP_005920266.1| - 6.2e-10 38.1 7.1 0.00012 21.2 0.1 2.8 1 1 1 2 2 2 2 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_9 PF13187.1 gi|386001967|ref|YP_005920266.1| - 2.5e-08 34.0 1.9 2.5e-08 34.0 1.3 3.6 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386001967|ref|YP_005920266.1| - 5.7e-07 28.8 1.4 5.7e-07 28.8 1.0 4.1 6 0 0 6 6 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386001967|ref|YP_005920266.1| - 5.8e-07 29.7 8.0 5.8e-07 29.7 5.5 4.2 1 1 3 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386001967|ref|YP_005920266.1| - 1.9e-05 24.5 5.5 1.9e-05 24.5 3.8 3.6 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386001967|ref|YP_005920266.1| - 3.3e-05 23.6 4.4 3.3e-05 23.6 3.0 3.2 4 1 0 4 4 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386001967|ref|YP_005920266.1| - 3.4e-05 23.5 11.7 0.0006 19.5 0.9 4.4 6 0 0 6 6 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386001967|ref|YP_005920266.1| - 4.4e-05 23.1 10.1 4.4e-05 23.1 7.0 4.2 3 2 1 4 4 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386001967|ref|YP_005920266.1| - 0.0024 18.3 6.4 0.0024 18.3 4.4 5.1 6 0 0 6 6 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386001967|ref|YP_005920266.1| - 0.0033 18.1 4.3 0.0033 18.1 3.0 3.9 4 0 0 4 4 3 1 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|386001967|ref|YP_005920266.1| - 0.028 14.9 6.2 2.8 8.5 0.4 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|386001967|ref|YP_005920266.1| - 0.029 14.2 1.1 0.029 14.2 0.8 4.6 5 0 0 5 5 4 0 4Fe-4S binding domain DUF364 PF04016.7 gi|386001968|ref|YP_005920267.1| - 5.1e-09 35.5 0.0 1.4e-08 34.2 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|386001968|ref|YP_005920267.1| - 0.02 15.0 0.2 0.062 13.4 0.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4213) FdhD-NarQ PF02634.10 gi|386001969|ref|YP_005920268.1| - 5.9e-54 183.0 0.3 3.1e-44 151.1 0.1 2.0 1 1 1 2 2 2 2 FdhD/NarQ family Molybdopterin PF00384.17 gi|386001970|ref|YP_005920269.1| - 5.4e-88 295.6 0.0 6.4e-88 295.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|386001970|ref|YP_005920269.1| - 3.5e-33 113.7 0.0 7.9e-33 112.5 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|386001970|ref|YP_005920269.1| - 0.032 14.0 0.0 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Molybdopterin PF00384.17 gi|386001971|ref|YP_005920270.1| - 2.5e-07 29.7 0.0 3.6e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.17 gi|386001971|ref|YP_005920270.1| - 0.11 12.1 0.0 0.91 9.2 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Molydop_binding PF01568.16 gi|386001972|ref|YP_005920271.1| - 5.1e-11 42.3 0.0 6.9e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain GXGXG PF01493.14 gi|386001973|ref|YP_005920272.1| - 6.2e-37 126.5 23.0 8.9e-37 126.0 15.9 1.2 1 0 0 1 1 1 1 GXGXG motif Amidohydro_3 PF07969.6 gi|386001974|ref|YP_005920273.1| - 2.8e-61 207.9 6.3 3.4e-61 207.6 4.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|386001974|ref|YP_005920273.1| - 1.9e-10 40.4 0.4 3.1e-09 36.5 0.1 2.6 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|386001974|ref|YP_005920273.1| - 0.0035 17.4 4.6 0.0042 17.1 0.1 2.6 3 0 0 3 3 3 1 Amidohydrolase Fer4 PF00037.22 gi|386001975|ref|YP_005920274.1| - 4.4e-52 171.7 80.4 1.3e-08 34.0 2.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386001975|ref|YP_005920274.1| - 3.3e-49 165.0 144.8 4.2e-12 46.2 7.3 5.8 1 1 7 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386001975|ref|YP_005920274.1| - 3e-37 124.9 83.8 2.3e-07 30.3 1.6 8.1 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.1 gi|386001975|ref|YP_005920274.1| - 4.9e-36 122.7 57.3 1.6e-09 37.8 5.6 5.9 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386001975|ref|YP_005920274.1| - 2.7e-33 113.5 58.4 5.5e-10 38.8 2.5 5.9 3 1 4 7 7 7 7 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386001975|ref|YP_005920274.1| - 1.7e-32 111.9 50.8 2.7e-10 40.8 4.4 7.2 7 0 0 7 7 7 7 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|386001975|ref|YP_005920274.1| - 3.2e-29 100.5 63.0 5.6e-07 29.3 5.2 6.8 5 2 2 7 7 7 7 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386001975|ref|YP_005920274.1| - 1.4e-28 98.6 52.1 2.9e-10 40.0 3.7 5.4 4 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386001975|ref|YP_005920274.1| - 1.7e-27 93.6 75.4 2.5e-05 23.9 1.9 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_4 PF12800.2 gi|386001975|ref|YP_005920274.1| - 3.5e-21 73.6 75.7 0.00079 19.5 2.3 8.2 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_17 PF13534.1 gi|386001975|ref|YP_005920274.1| - 5e-18 65.2 58.1 3.2e-05 24.1 5.3 6.5 2 2 6 8 8 8 7 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|386001975|ref|YP_005920274.1| - 9e-17 61.4 55.9 0.01 16.3 0.4 8.3 8 0 0 8 8 8 7 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|386001975|ref|YP_005920274.1| - 6.6e-16 58.4 68.3 0.0065 16.8 0.6 8.1 5 2 3 8 8 8 6 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386001975|ref|YP_005920274.1| - 2e-13 49.7 112.8 0.0081 16.6 4.8 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_13 PF13370.1 gi|386001975|ref|YP_005920274.1| - 4.7e-08 33.3 78.2 0.053 13.9 1.9 8.4 8 0 0 8 8 8 7 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|386001975|ref|YP_005920274.1| - 5.1e-06 26.2 41.8 0.00091 19.0 8.7 6.0 3 2 2 5 5 5 4 4Fe-4S dicluster domain FmdE PF02663.9 gi|386001976|ref|YP_005920275.1| - 8e-26 90.4 0.0 1.1e-25 90.0 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon HypA PF01155.14 gi|386001976|ref|YP_005920275.1| - 0.022 14.4 0.3 0.037 13.7 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|386001976|ref|YP_005920275.1| - 0.026 14.3 0.2 0.046 13.5 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|386001976|ref|YP_005920275.1| - 0.085 12.7 1.1 0.17 11.7 0.7 1.4 1 0 0 1 1 1 0 FYVE zinc finger DUF2318 PF10080.4 gi|386001976|ref|YP_005920275.1| - 0.088 12.5 1.4 0.3 10.8 0.2 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) GATase PF00117.23 gi|386001977|ref|YP_005920276.1| - 2.1e-20 72.9 0.0 2.7e-20 72.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|386001977|ref|YP_005920276.1| - 1.9e-08 34.0 0.1 1.1e-07 31.5 0.1 1.9 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|386001977|ref|YP_005920276.1| - 0.014 14.9 0.1 0.11 12.0 0.1 2.0 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.1 gi|386001977|ref|YP_005920276.1| - 0.042 12.7 0.0 3.5 6.4 0.0 2.6 3 0 0 3 3 3 0 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|386001977|ref|YP_005920276.1| - 0.063 12.8 0.0 0.22 11.1 0.0 1.8 2 0 0 2 2 2 0 SNO glutamine amidotransferase family ATP_bind_4 PF01902.12 gi|386001978|ref|YP_005920277.1| - 5.2e-64 215.6 0.0 5.8e-64 215.4 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region AMP-binding PF00501.23 gi|386001979|ref|YP_005920278.1| - 6.6e-79 265.2 0.0 8.2e-79 264.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|386001979|ref|YP_005920278.1| - 1.4e-18 67.6 1.0 3.2e-18 66.4 0.7 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Hpr_kinase_C PF07475.7 gi|386001980|ref|YP_005920279.1| - 1.9e-06 27.2 0.0 1.1e-05 24.8 0.0 2.1 1 1 0 1 1 1 1 HPr Serine kinase C-terminal domain PEPCK_ATP PF01293.15 gi|386001980|ref|YP_005920279.1| - 0.00019 20.0 0.0 0.00025 19.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_16 PF13191.1 gi|386001980|ref|YP_005920279.1| - 0.0053 16.7 0.0 0.013 15.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|386001980|ref|YP_005920279.1| - 0.0077 16.1 0.0 0.023 14.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|386001980|ref|YP_005920279.1| - 0.018 14.4 0.4 3.7 6.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|386001980|ref|YP_005920279.1| - 0.06 12.8 0.2 0.13 11.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|386001980|ref|YP_005920279.1| - 0.075 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DrsE PF02635.10 gi|386001981|ref|YP_005920280.1| - 4.6e-20 71.8 0.1 5.3e-20 71.6 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Hydrolase PF00702.21 gi|386001982|ref|YP_005920281.1| - 2e-13 51.2 0.0 2.2e-13 51.1 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|386001982|ref|YP_005920281.1| - 2.4e-05 24.5 0.0 4.5e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|386001982|ref|YP_005920281.1| - 0.047 13.2 0.0 0.38 10.2 0.0 2.0 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase HTH_IclR PF09339.5 gi|386001983|ref|YP_005920282.1| - 0.005 16.3 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|386001983|ref|YP_005920282.1| - 0.0089 15.6 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|386001983|ref|YP_005920282.1| - 0.012 14.9 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|386001983|ref|YP_005920282.1| - 0.033 13.8 0.0 0.081 12.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MbeD_MobD PF04899.7 gi|386001983|ref|YP_005920282.1| - 0.056 13.3 0.4 0.25 11.2 0.3 1.9 1 1 0 1 1 1 0 MbeD/MobD like HTH_11 PF08279.7 gi|386001983|ref|YP_005920282.1| - 0.063 12.9 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.1 gi|386001983|ref|YP_005920282.1| - 0.065 12.9 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF3373 PF11853.3 gi|386001983|ref|YP_005920282.1| - 0.16 10.4 0.1 0.17 10.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) Hydrolase_6 PF13344.1 gi|386001984|ref|YP_005920283.1| - 6.5e-22 77.3 0.0 1.1e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|386001984|ref|YP_005920283.1| - 2.3e-19 68.8 0.1 1.2e-17 63.3 0.0 2.3 2 0 0 2 2 2 1 HAD-hyrolase-like HAD_2 PF13419.1 gi|386001984|ref|YP_005920283.1| - 1.5e-12 48.0 0.0 1.4e-07 31.8 0.0 2.4 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|386001984|ref|YP_005920283.1| - 8.4e-11 42.6 0.2 6.2e-10 39.8 0.2 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|386001984|ref|YP_005920283.1| - 0.13 11.7 0.0 0.26 10.7 0.0 1.4 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Peptidase_M23 PF01551.17 gi|386001985|ref|YP_005920284.1| - 5.3e-13 48.8 0.0 7.6e-13 48.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M23 DUF2284 PF10050.4 gi|386001986|ref|YP_005920285.1| - 5.8e-51 172.3 0.0 6.7e-51 172.1 0.0 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) HTH_3 PF01381.17 gi|386001988|ref|YP_005920287.1| - 1.5e-09 37.5 0.4 3.6e-09 36.3 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|386001988|ref|YP_005920287.1| - 0.00027 20.9 0.1 0.00054 19.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|386001988|ref|YP_005920287.1| - 0.0035 17.5 0.0 0.0077 16.4 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain ALIX_LYPXL_bnd PF13949.1 gi|386001988|ref|YP_005920287.1| - 0.03 13.2 0.1 0.039 12.9 0.0 1.3 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV HTH_psq PF05225.11 gi|386001988|ref|YP_005920287.1| - 0.057 12.9 2.7 0.12 11.8 0.0 2.5 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_31 PF13560.1 gi|386001988|ref|YP_005920287.1| - 0.057 13.6 1.8 0.076 13.2 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain Imm47 PF15586.1 gi|386001988|ref|YP_005920287.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 47 NMT1_2 PF13379.1 gi|386001989|ref|YP_005920288.1| - 6.5e-41 140.3 0.1 8.5e-41 139.9 0.1 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|386001989|ref|YP_005920288.1| - 7.7e-16 58.3 0.0 1e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|386001989|ref|YP_005920288.1| - 0.0002 20.7 0.0 0.00028 20.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein BPD_transp_1 PF00528.17 gi|386001990|ref|YP_005920289.1| - 1.3e-20 73.7 16.7 2.1e-20 73.0 11.6 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component YbjQ_1 PF01906.12 gi|386001991|ref|YP_005920290.1| - 3.7e-40 136.6 0.3 4e-40 136.4 0.2 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding GTP_EFTU_D2 PF03144.20 gi|386001992|ref|YP_005920291.1| - 7.8e-12 45.1 0.1 5.8e-11 42.3 0.1 2.3 3 0 0 3 3 3 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|386001992|ref|YP_005920291.1| - 2.2e-08 33.6 0.0 4.9e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 tRNA-Thr_ED PF08915.6 gi|386001993|ref|YP_005920292.1| - 6.7e-51 171.8 0.0 1.3e-50 170.9 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|386001993|ref|YP_005920292.1| - 3.1e-21 75.7 2.5 5.6e-21 74.8 1.7 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|386001993|ref|YP_005920292.1| - 5e-17 61.6 3.8 6.2e-17 61.3 0.1 2.6 3 0 0 3 3 3 1 Anticodon binding domain Glycoamylase PF10091.4 gi|386001993|ref|YP_005920292.1| - 0.039 13.0 0.0 0.069 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative glucoamylase NosD PF05048.8 gi|386001994|ref|YP_005920293.1| - 4e-41 140.7 20.2 1e-40 139.4 13.9 1.5 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|386001994|ref|YP_005920293.1| - 6.2e-22 78.0 40.1 1.4e-12 47.6 10.9 2.2 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|386001994|ref|YP_005920293.1| - 0.0014 17.8 8.0 0.012 14.7 5.5 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) Acetyltransf_1 PF00583.19 gi|386001997|ref|YP_005920296.1| - 5.3e-17 61.6 1.4 5.8e-17 61.4 0.4 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|386001997|ref|YP_005920296.1| - 1.4e-11 44.3 0.1 2.9e-11 43.3 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|386001997|ref|YP_005920296.1| - 2.4e-08 34.0 0.0 3.4e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|386001997|ref|YP_005920296.1| - 9.3e-08 31.9 0.0 1.8e-07 31.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|386001997|ref|YP_005920296.1| - 1.3e-07 31.7 0.1 1.6e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386001997|ref|YP_005920296.1| - 1.1e-06 28.2 0.1 1.5e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|386001997|ref|YP_005920296.1| - 7.6e-05 22.6 0.0 0.00012 22.0 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|386001997|ref|YP_005920296.1| - 0.00028 21.0 0.0 0.00032 20.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|386001997|ref|YP_005920296.1| - 0.013 15.0 0.1 0.016 14.7 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|386001997|ref|YP_005920296.1| - 0.031 14.2 0.2 0.044 13.7 0.2 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Lactamase_B PF00753.22 gi|386001999|ref|YP_005920298.1| - 1.1e-25 90.4 1.0 1.5e-25 90.0 0.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|386001999|ref|YP_005920298.1| - 3.5e-07 29.9 0.0 4.7e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RTC PF01137.16 gi|386002000|ref|YP_005920299.1| - 4.6e-79 264.3 0.0 5.7e-79 264.1 0.0 1.1 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|386002000|ref|YP_005920299.1| - 9.5e-19 67.3 1.0 1.8e-18 66.4 0.7 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain RNA_pol_L_2 PF13656.1 gi|386002001|ref|YP_005920300.1| - 7.3e-19 66.9 0.0 8.6e-19 66.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|386002001|ref|YP_005920300.1| - 0.001 18.1 0.0 0.0012 17.9 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain ECR1_N PF14382.1 gi|386002002|ref|YP_005920301.1| - 8.5e-13 47.3 0.4 1.6e-12 46.4 0.3 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|386002002|ref|YP_005920301.1| - 0.0025 17.8 0.1 0.12 12.4 0.0 2.4 2 0 0 2 2 2 1 S1 RNA binding domain DZR PF12773.2 gi|386002002|ref|YP_005920301.1| - 0.0075 16.0 0.3 0.013 15.3 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF3039 PF11238.3 gi|386002002|ref|YP_005920301.1| - 0.015 14.6 0.6 0.028 13.8 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) HypA PF01155.14 gi|386002002|ref|YP_005920301.1| - 0.019 14.6 0.2 0.063 12.9 0.1 1.7 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|386002002|ref|YP_005920301.1| - 0.079 12.6 2.2 0.49 10.1 1.6 2.1 1 1 0 1 1 1 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|386002002|ref|YP_005920301.1| - 0.11 12.0 3.4 0.42 10.1 2.4 1.9 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-RING_5 PF14634.1 gi|386002002|ref|YP_005920301.1| - 0.15 11.8 1.1 0.23 11.2 0.8 1.3 1 0 0 1 1 1 0 zinc-RING finger domain Prok-RING_1 PF14446.1 gi|386002002|ref|YP_005920301.1| - 0.21 11.3 1.0 0.39 10.4 0.7 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Methyltransf_26 PF13659.1 gi|386002003|ref|YP_005920302.1| - 4.6e-16 58.9 0.1 6e-16 58.5 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|386002003|ref|YP_005920302.1| - 1.5e-13 50.4 0.0 2.1e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|386002003|ref|YP_005920302.1| - 2e-11 44.4 0.1 3e-11 43.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|386002003|ref|YP_005920302.1| - 1.3e-09 37.8 0.0 1.7e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|386002003|ref|YP_005920302.1| - 3.7e-09 36.1 0.1 4.5e-09 35.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|386002003|ref|YP_005920302.1| - 9e-09 35.0 0.0 1e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386002003|ref|YP_005920302.1| - 3e-05 24.3 0.0 4.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386002003|ref|YP_005920302.1| - 0.0003 21.2 0.0 0.00076 19.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386002003|ref|YP_005920302.1| - 0.004 16.9 0.0 0.0047 16.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|386002003|ref|YP_005920302.1| - 0.0064 16.0 0.0 0.0086 15.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.1 gi|386002003|ref|YP_005920302.1| - 0.015 14.9 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386002003|ref|YP_005920302.1| - 0.016 15.6 0.0 0.023 15.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|386002003|ref|YP_005920302.1| - 0.081 12.4 0.0 0.2 11.1 0.0 1.6 2 0 0 2 2 2 0 DNA methylase TPR_12 PF13424.1 gi|386002004|ref|YP_005920303.1| - 3.8e-33 113.2 16.9 8.9e-14 51.1 0.1 4.7 4 1 0 5 5 4 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386002004|ref|YP_005920303.1| - 5e-22 77.3 8.7 6.1e-07 29.0 0.3 4.2 4 0 0 4 4 3 3 TPR repeat TPR_2 PF07719.12 gi|386002004|ref|YP_005920303.1| - 2.9e-20 70.4 13.4 0.0013 18.4 0.7 7.5 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386002004|ref|YP_005920303.1| - 1e-18 65.5 9.6 0.0028 17.3 0.1 7.5 7 0 0 7 7 6 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|386002004|ref|YP_005920303.1| - 1.4e-18 65.6 9.7 3.7e-05 23.1 0.0 6.6 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386002004|ref|YP_005920303.1| - 2.6e-14 51.8 9.5 0.054 13.2 0.0 6.8 7 0 0 7 7 6 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|386002004|ref|YP_005920303.1| - 5.7e-13 48.3 8.5 0.0022 17.8 0.4 6.1 5 0 0 5 5 5 4 Tetratricopeptide repeat SNAP PF14938.1 gi|386002004|ref|YP_005920303.1| - 4e-10 39.3 0.2 6.1e-06 25.5 0.2 2.8 1 1 1 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_14 PF13428.1 gi|386002004|ref|YP_005920303.1| - 4.4e-10 39.2 13.1 0.43 11.3 0.1 7.9 5 2 2 7 7 6 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386002004|ref|YP_005920303.1| - 1.2e-06 28.9 16.3 0.02 15.5 0.2 5.7 5 1 3 8 8 5 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|386002004|ref|YP_005920303.1| - 0.00064 19.8 0.6 1.1 9.3 0.2 3.5 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|386002004|ref|YP_005920303.1| - 0.001 18.8 1.7 0.0066 16.2 0.6 2.7 1 1 2 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_17 PF13431.1 gi|386002004|ref|YP_005920303.1| - 0.0024 17.9 2.1 2.6 8.4 0.0 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|386002004|ref|YP_005920303.1| - 0.0028 17.9 0.9 0.0028 17.9 0.7 5.4 5 0 0 5 5 4 1 Tetratricopeptide repeat Foie-gras_1 PF11817.3 gi|386002004|ref|YP_005920303.1| - 0.012 15.1 0.2 2.3 7.6 0.0 3.1 1 1 2 3 3 3 0 Foie gras liver health family 1 RPN7 PF10602.4 gi|386002004|ref|YP_005920303.1| - 0.025 13.9 0.4 0.81 9.0 0.1 2.8 1 1 1 2 2 2 0 26S proteasome subunit RPN7 Coat_F PF07875.7 gi|386002004|ref|YP_005920303.1| - 0.037 14.1 0.0 0.084 13.0 0.0 1.5 1 0 0 1 1 1 0 Coat F domain Rapsyn_N PF10579.4 gi|386002004|ref|YP_005920303.1| - 0.081 12.7 0.2 10 6.0 0.0 3.5 2 1 2 4 4 4 0 Rapsyn N-terminal myristoylation and linker region Dpy-30 PF05186.8 gi|386002004|ref|YP_005920303.1| - 0.11 11.9 0.1 2.5 7.6 0.0 2.5 2 0 0 2 2 2 0 Dpy-30 motif TPR_6 PF13174.1 gi|386002004|ref|YP_005920303.1| - 1.7 9.3 7.3 58 4.4 0.0 5.8 7 0 0 7 7 5 0 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386002004|ref|YP_005920303.1| - 2.3 8.1 13.4 7.8 6.4 0.2 5.1 4 2 1 5 5 5 0 Tetratricopeptide repeat PALP PF00291.20 gi|386002005|ref|YP_005920304.1| - 1.3e-81 274.1 5.4 1.6e-81 273.8 3.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|386002005|ref|YP_005920304.1| - 1.4e-05 24.4 0.0 4.5e-05 22.8 0.0 1.9 1 0 0 1 1 1 1 ACT domain MacB_PCD PF12704.2 gi|386002006|ref|YP_005920305.1| - 5.1e-48 163.6 9.2 2.8e-24 86.0 0.0 2.9 3 0 0 3 3 3 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|386002006|ref|YP_005920305.1| - 2.6e-44 149.8 35.0 1.9e-23 82.4 6.9 3.1 4 0 0 4 4 4 2 FtsX-like permease family INSIG PF07281.7 gi|386002006|ref|YP_005920305.1| - 0.025 13.9 0.1 0.025 13.9 0.0 2.5 4 0 0 4 4 4 0 Insulin-induced protein (INSIG) DUF1805 PF08827.6 gi|386002007|ref|YP_005920306.1| - 1.8e-20 72.4 0.1 2.3e-20 72.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) NTP_transf_2 PF01909.18 gi|386002008|ref|YP_005920307.1| - 5.5e-07 29.8 0.1 7e-07 29.4 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain AP_endonuc_2 PF01261.19 gi|386002008|ref|YP_005920307.1| - 0.052 12.8 0.0 0.052 12.8 0.0 1.0 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Pentapeptide_3 PF13576.1 gi|386002009|ref|YP_005920308.1| - 9.1e-13 47.8 17.7 4.4e-08 32.8 0.3 3.9 2 1 1 3 3 3 2 Pentapeptide repeats (9 copies) PGK PF00162.14 gi|386002010|ref|YP_005920309.1| - 7.2e-126 419.8 0.5 8.1e-126 419.6 0.3 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase SRP54_N PF02881.14 gi|386002010|ref|YP_005920309.1| - 0.00048 20.1 0.5 0.002 18.1 0.2 2.1 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain DHH PF01368.15 gi|386002011|ref|YP_005920310.1| - 1.9e-12 47.0 0.0 4.7e-12 45.7 0.0 1.6 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|386002011|ref|YP_005920310.1| - 5.2e-05 22.8 5.6 0.00012 21.6 3.9 1.6 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.13 gi|386002012|ref|YP_005920311.1| - 4.7e-54 181.3 2.5 1e-27 96.4 1.0 2.3 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|386002012|ref|YP_005920311.1| - 6e-22 77.0 0.6 7.5e-11 41.4 0.1 3.4 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|386002012|ref|YP_005920311.1| - 4.9e-10 39.5 0.7 7.9e-06 26.0 0.2 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|386002012|ref|YP_005920311.1| - 6.5e-07 28.9 0.1 0.11 11.8 0.1 3.2 3 0 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|386002012|ref|YP_005920311.1| - 2.3e-06 27.5 0.4 0.0019 18.0 0.1 2.7 2 1 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|386002012|ref|YP_005920311.1| - 5.6e-06 26.4 0.3 0.011 15.7 0.0 2.3 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|386002012|ref|YP_005920311.1| - 5.7e-06 25.5 0.9 0.0018 17.3 0.3 2.1 2 0 0 2 2 2 2 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|386002012|ref|YP_005920311.1| - 8.6e-06 26.0 0.6 0.11 12.8 0.0 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|386002012|ref|YP_005920311.1| - 2.6e-05 24.5 0.1 0.1 12.9 0.1 2.3 2 0 0 2 2 2 2 XdhC Rossmann domain NAD_binding_8 PF13450.1 gi|386002012|ref|YP_005920311.1| - 3.9e-05 23.5 0.0 0.55 10.3 0.0 3.0 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain F420_oxidored PF03807.12 gi|386002012|ref|YP_005920311.1| - 4.7e-05 23.7 1.8 1.7 9.1 0.1 4.1 3 1 1 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|386002012|ref|YP_005920311.1| - 7.8e-05 22.4 0.2 0.13 11.9 0.0 3.0 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|386002012|ref|YP_005920311.1| - 0.00012 21.9 0.1 0.17 11.7 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|386002012|ref|YP_005920311.1| - 0.00017 21.0 0.0 0.077 12.4 0.0 2.4 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|386002012|ref|YP_005920311.1| - 0.00033 19.8 0.0 0.7 8.8 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain NmrA PF05368.8 gi|386002012|ref|YP_005920311.1| - 0.0012 18.1 0.3 0.015 14.5 0.2 2.1 2 0 0 2 2 2 1 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|386002012|ref|YP_005920311.1| - 0.0019 17.9 0.1 0.69 9.6 0.0 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.4 gi|386002012|ref|YP_005920311.1| - 0.0022 17.7 0.1 1.2 8.8 0.3 2.7 2 0 0 2 2 2 1 Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|386002012|ref|YP_005920311.1| - 0.0059 15.7 0.1 2.2 7.3 0.0 3.0 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1188 PF06690.6 gi|386002012|ref|YP_005920311.1| - 0.0099 15.0 0.3 1.5 7.9 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1188) Methyltransf_31 PF13847.1 gi|386002012|ref|YP_005920311.1| - 0.014 15.0 0.1 0.057 12.9 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain DAO PF01266.19 gi|386002012|ref|YP_005920311.1| - 0.024 13.5 0.0 2.7 6.7 0.0 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase OCD_Mu_crystall PF02423.10 gi|386002012|ref|YP_005920311.1| - 0.046 12.4 0.1 0.14 10.8 0.2 1.7 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family ThiF PF00899.16 gi|386002012|ref|YP_005920311.1| - 0.067 13.0 1.3 5.7 6.7 0.0 3.1 2 1 1 3 3 3 0 ThiF family Oxidored_nitro PF00148.14 gi|386002012|ref|YP_005920311.1| - 0.069 11.7 0.0 0.12 11.0 0.0 1.4 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase UDG PF03167.14 gi|386002013|ref|YP_005920312.1| - 4.3e-39 133.4 0.0 5.6e-39 133.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily NTP_transferase PF00483.18 gi|386002015|ref|YP_005920314.1| - 2.7e-33 115.3 0.0 3.8e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|386002015|ref|YP_005920314.1| - 6.1e-08 31.8 5.3 0.001 18.4 0.7 3.6 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|386002015|ref|YP_005920314.1| - 0.0073 16.3 0.0 0.021 14.9 0.0 1.6 1 1 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|386002015|ref|YP_005920314.1| - 0.018 14.6 3.0 0.86 9.2 0.3 3.6 3 1 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase Iso_dh PF00180.15 gi|386002016|ref|YP_005920315.1| - 1e-66 225.2 0.0 1.6e-66 224.6 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase RIO1 PF01163.17 gi|386002017|ref|YP_005920316.1| - 1.4e-39 135.4 0.0 1.9e-39 134.9 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|386002017|ref|YP_005920316.1| - 1.3e-16 60.4 0.0 3e-16 59.2 0.0 1.6 2 0 0 2 2 2 1 Rio2, N-terminal Kdo PF06293.9 gi|386002017|ref|YP_005920316.1| - 6.9e-07 28.5 0.1 5.2e-06 25.6 0.1 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|386002017|ref|YP_005920316.1| - 1.5e-06 28.1 6.6 5.9e-05 22.9 4.1 2.6 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|386002017|ref|YP_005920316.1| - 0.0009 18.4 0.0 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|386002017|ref|YP_005920316.1| - 0.055 12.5 0.0 0.099 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein tyrosine kinase MarR_2 PF12802.2 gi|386002017|ref|YP_005920316.1| - 0.084 12.5 0.3 0.27 10.9 0.2 1.9 1 0 0 1 1 1 0 MarR family Choline_kinase PF01633.15 gi|386002017|ref|YP_005920316.1| - 0.15 11.5 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 Choline/ethanolamine kinase DUF460 PF04312.8 gi|386002018|ref|YP_005920317.1| - 1.5e-45 154.0 0.0 4.2e-45 152.6 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Img2 PF05046.9 gi|386002018|ref|YP_005920317.1| - 0.043 14.0 0.0 0.16 12.1 0.0 2.0 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) VitD-bind_III PF09164.5 gi|386002018|ref|YP_005920317.1| - 0.17 11.5 0.1 32 4.2 0.0 2.7 2 0 0 2 2 2 0 Vitamin D binding protein, domain III Lzipper-MIP1 PF14389.1 gi|386002018|ref|YP_005920317.1| - 0.21 11.6 14.9 1.6 8.8 3.4 2.6 1 1 1 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 DUF4391 PF14335.1 gi|386002018|ref|YP_005920317.1| - 1.7 7.9 19.2 1.9 7.8 2.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4391) DivIC PF04977.10 gi|386002018|ref|YP_005920317.1| - 1.9 8.0 18.6 0.49 9.9 2.9 3.0 2 0 0 2 2 2 0 Septum formation initiator DUF641 PF04859.7 gi|386002018|ref|YP_005920317.1| - 3.1 7.5 12.5 4.2 7.1 3.2 2.5 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) NadA PF02445.11 gi|386002019|ref|YP_005920318.1| - 1.6e-123 411.2 0.0 1.8e-123 411.0 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF2910 PF11139.3 gi|386002020|ref|YP_005920319.1| - 0.025 13.7 0.6 0.029 13.4 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) Flavi_NS2B PF01002.14 gi|386002020|ref|YP_005920319.1| - 0.042 13.4 0.6 0.072 12.6 0.1 1.6 1 1 1 2 2 2 0 Flavivirus non-structural protein NS2B PrgI PF12666.2 gi|386002020|ref|YP_005920319.1| - 0.06 13.4 0.2 0.068 13.3 0.1 1.1 1 0 0 1 1 1 0 PrgI family protein Sugarporin_N PF11471.3 gi|386002020|ref|YP_005920319.1| - 0.14 11.7 0.8 0.16 11.5 0.2 1.4 1 1 1 2 2 2 0 Maltoporin periplasmic N-terminal extension HI0933_like PF03486.9 gi|386002022|ref|YP_005920321.1| - 1e-114 383.2 0.0 1.1e-114 383.0 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.19 gi|386002022|ref|YP_005920321.1| - 2e-09 36.8 0.9 0.0011 17.9 0.0 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|386002022|ref|YP_005920321.1| - 2.5e-08 33.1 0.4 1.2e-06 27.6 0.2 2.4 2 1 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|386002022|ref|YP_005920321.1| - 1.8e-07 30.4 0.0 3.1e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|386002022|ref|YP_005920321.1| - 6.5e-07 29.2 0.2 2.1e-06 27.6 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|386002022|ref|YP_005920321.1| - 8.4e-07 29.2 0.0 6.5e-06 26.3 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|386002022|ref|YP_005920321.1| - 8.1e-06 25.8 0.9 8.4e-05 22.5 0.6 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|386002022|ref|YP_005920321.1| - 1.1e-05 24.5 0.7 0.097 11.5 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|386002022|ref|YP_005920321.1| - 0.00035 19.7 0.1 0.00042 19.5 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|386002022|ref|YP_005920321.1| - 0.00044 19.2 0.4 0.0012 17.8 0.1 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|386002022|ref|YP_005920321.1| - 0.00072 19.9 0.4 2.2 8.7 0.0 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Abhydrolase_6 PF12697.2 gi|386002023|ref|YP_005920322.1| - 1.2e-19 71.0 3.7 2.4e-19 70.1 2.5 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|386002023|ref|YP_005920322.1| - 3e-10 40.0 0.0 1.2e-09 38.0 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|386002023|ref|YP_005920322.1| - 2e-09 37.3 0.0 3.8e-09 36.4 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|386002023|ref|YP_005920322.1| - 0.0094 15.2 0.0 0.23 10.7 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family Thioesterase PF00975.15 gi|386002023|ref|YP_005920322.1| - 0.058 13.6 0.0 0.062 13.5 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain Esterase PF00756.15 gi|386002023|ref|YP_005920322.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Glyoxalase_2 PF12681.2 gi|386002024|ref|YP_005920323.1| - 6.8e-19 68.4 0.0 7.9e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|386002024|ref|YP_005920323.1| - 2.2e-08 34.1 0.0 9.6e-07 28.8 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|386002024|ref|YP_005920323.1| - 0.00097 19.1 0.0 0.021 14.8 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Cupin_2 PF07883.6 gi|386002026|ref|YP_005920325.1| - 7e-14 51.0 0.1 1.1e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|386002026|ref|YP_005920325.1| - 8e-06 25.3 0.0 1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|386002026|ref|YP_005920325.1| - 4.3e-05 23.1 0.0 5.4e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|386002026|ref|YP_005920325.1| - 8.1e-05 22.3 0.1 9.7e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|386002026|ref|YP_005920325.1| - 0.004 16.4 0.0 0.0069 15.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|386002026|ref|YP_005920325.1| - 0.0078 15.8 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 AraC-binding-like domain CENP-C_C PF11699.3 gi|386002026|ref|YP_005920325.1| - 0.026 14.5 0.0 0.034 14.1 0.0 1.1 1 0 0 1 1 1 0 Mif2/CENP-C like EutQ PF06249.7 gi|386002026|ref|YP_005920325.1| - 0.072 12.6 0.0 0.08 12.4 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ GPI PF06560.6 gi|386002026|ref|YP_005920325.1| - 0.12 11.4 0.0 0.25 10.3 0.0 1.6 1 1 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) dCMP_cyt_deam_1 PF00383.17 gi|386002027|ref|YP_005920326.1| - 6.6e-21 73.8 0.0 8.4e-21 73.5 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|386002027|ref|YP_005920326.1| - 0.00057 19.7 0.1 0.0069 16.2 0.1 2.1 1 1 0 1 1 1 1 Bd3614-like deaminase ComZ PF10815.3 gi|386002027|ref|YP_005920326.1| - 0.036 13.8 0.1 1.3 8.8 0.0 2.3 2 0 0 2 2 2 0 ComZ XOO_2897-deam PF14440.1 gi|386002027|ref|YP_005920326.1| - 0.081 12.6 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase MafB19-deam PF14437.1 gi|386002027|ref|YP_005920326.1| - 0.14 11.7 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 MafB19-like deaminase APOBEC_N PF08210.6 gi|386002027|ref|YP_005920326.1| - 0.15 11.6 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 APOBEC-like N-terminal domain Saccharop_dh PF03435.13 gi|386002028|ref|YP_005920327.1| - 4.5e-08 32.4 0.0 9e-08 31.4 0.0 1.5 2 0 0 2 2 2 1 Saccharopine dehydrogenase TPR_12 PF13424.1 gi|386002029|ref|YP_005920328.1| - 6.5e-29 99.7 4.2 4.9e-17 61.6 0.2 2.7 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|386002029|ref|YP_005920328.1| - 2.9e-22 77.8 10.0 3.7e-07 29.8 0.3 5.0 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386002029|ref|YP_005920328.1| - 7.6e-17 60.7 1.1 4e-08 32.7 0.1 3.0 1 1 2 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|386002029|ref|YP_005920328.1| - 2.6e-16 58.1 0.6 0.0011 18.6 0.1 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|386002029|ref|YP_005920328.1| - 9.5e-16 56.6 0.1 7.2e-05 22.2 0.0 3.6 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386002029|ref|YP_005920328.1| - 4.1e-10 38.6 0.1 0.0081 15.8 0.0 3.9 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386002029|ref|YP_005920328.1| - 1.1e-09 37.4 0.0 0.017 14.8 0.0 3.6 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386002029|ref|YP_005920328.1| - 7.9e-09 35.3 12.9 0.11 13.1 0.2 6.1 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386002029|ref|YP_005920328.1| - 2.8e-06 27.8 10.2 1.6e-05 25.4 0.4 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386002029|ref|YP_005920328.1| - 3.3e-05 24.0 0.2 3.5 8.2 0.0 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386002029|ref|YP_005920328.1| - 0.00019 21.2 5.5 0.15 11.8 0.1 3.9 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386002029|ref|YP_005920328.1| - 0.00042 20.3 0.3 2.9 8.3 0.0 4.0 3 0 0 3 3 3 1 Tetratricopeptide repeat AAA_22 PF13401.1 gi|386002029|ref|YP_005920328.1| - 0.00071 19.7 0.0 0.0094 16.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain TPR_4 PF07721.9 gi|386002029|ref|YP_005920328.1| - 0.0048 17.2 15.7 0.18 12.3 0.1 5.5 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386002029|ref|YP_005920328.1| - 0.016 15.5 0.3 0.016 15.5 0.2 3.6 3 1 1 4 4 4 0 Tetratricopeptide repeat AAA_16 PF13191.1 gi|386002029|ref|YP_005920328.1| - 0.017 15.1 3.6 0.064 13.2 0.0 3.2 2 1 0 2 2 2 0 AAA ATPase domain TPR_21 PF09976.4 gi|386002029|ref|YP_005920328.1| - 0.081 12.8 0.1 3.4 7.6 0.0 2.9 2 1 1 3 3 3 0 Tetratricopeptide repeat DUF258 PF03193.11 gi|386002029|ref|YP_005920328.1| - 0.14 11.3 0.0 0.3 10.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SNase PF00565.12 gi|386002030|ref|YP_005920329.1| - 9.6e-10 38.6 0.0 1.3e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Rubrerythrin PF02915.12 gi|386002031|ref|YP_005920330.1| - 6.7e-09 36.1 3.0 8.3e-09 35.8 2.0 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|386002031|ref|YP_005920330.1| - 0.00056 20.1 0.9 0.00079 19.6 0.5 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) Mn_catalase PF05067.7 gi|386002031|ref|YP_005920330.1| - 0.011 14.5 0.3 0.013 14.3 0.2 1.1 1 0 0 1 1 1 0 Manganese containing catalase DUF2202 PF09968.4 gi|386002031|ref|YP_005920330.1| - 0.014 15.1 1.0 0.018 14.7 0.7 1.1 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) COQ7 PF03232.8 gi|386002031|ref|YP_005920330.1| - 0.037 13.4 0.2 0.052 13.0 0.1 1.2 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 HAUS5 PF14817.1 gi|386002031|ref|YP_005920330.1| - 0.042 12.4 0.2 0.046 12.2 0.1 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 SseB_C PF14581.1 gi|386002031|ref|YP_005920330.1| - 0.092 12.6 0.4 0.11 12.3 0.2 1.2 1 0 0 1 1 1 0 SseB protein C-terminal domain DUF305 PF03713.8 gi|386002031|ref|YP_005920330.1| - 0.12 12.1 0.1 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF305) Ferritin PF00210.19 gi|386002031|ref|YP_005920330.1| - 0.16 11.7 3.4 0.32 10.7 2.4 1.6 1 1 0 1 1 1 0 Ferritin-like domain DUF165 PF02592.10 gi|386002032|ref|YP_005920331.1| - 1.7e-49 167.7 5.2 1.7e-49 167.7 3.6 1.5 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 MRAP PF15183.1 gi|386002032|ref|YP_005920331.1| - 0.032 13.8 0.1 0.074 12.6 0.1 1.6 1 0 0 1 1 1 0 Melanocortin-2 receptor accessory protein family Rep_fac_C PF08542.6 gi|386002033|ref|YP_005920332.1| - 1.2e-18 66.8 0.0 2.5e-18 65.8 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|386002033|ref|YP_005920332.1| - 3.8e-16 59.5 0.0 3.6e-15 56.3 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|386002033|ref|YP_005920332.1| - 9.2e-14 51.4 0.0 1.4e-11 44.2 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|386002033|ref|YP_005920332.1| - 3.1e-10 39.5 0.2 1.6e-08 33.9 0.0 2.9 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|386002033|ref|YP_005920332.1| - 3.4e-06 27.1 1.5 0.00014 21.9 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|386002033|ref|YP_005920332.1| - 1.3e-05 25.3 0.0 0.17 12.0 0.0 2.6 1 1 1 2 2 2 2 AAA domain Rad17 PF03215.10 gi|386002033|ref|YP_005920332.1| - 3.1e-05 22.8 0.0 0.003 16.3 0.0 2.2 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|386002033|ref|YP_005920332.1| - 3.3e-05 23.7 0.0 8.1e-05 22.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|386002033|ref|YP_005920332.1| - 8.6e-05 21.7 0.0 0.057 12.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|386002033|ref|YP_005920332.1| - 0.00068 19.0 0.0 0.0089 15.4 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|386002033|ref|YP_005920332.1| - 0.0013 17.5 0.0 0.021 13.5 0.0 2.5 1 1 1 2 2 2 1 TIP49 C-terminus AAA_3 PF07726.6 gi|386002033|ref|YP_005920332.1| - 0.0027 17.2 0.0 0.0055 16.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|386002033|ref|YP_005920332.1| - 0.0041 16.2 0.1 0.17 10.9 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin Sigma54_activ_2 PF14532.1 gi|386002033|ref|YP_005920332.1| - 0.0044 17.0 0.0 0.012 15.6 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_10 PF12846.2 gi|386002033|ref|YP_005920332.1| - 0.0055 16.1 0.1 0.45 9.8 0.0 2.4 1 1 0 2 2 2 1 AAA-like domain Sigma54_activat PF00158.21 gi|386002033|ref|YP_005920332.1| - 0.006 16.0 0.0 1.4 8.3 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain ResIII PF04851.10 gi|386002033|ref|YP_005920332.1| - 0.0078 16.0 0.0 0.031 14.1 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|386002033|ref|YP_005920332.1| - 0.0083 15.8 0.0 0.026 14.2 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain TPR_14 PF13428.1 gi|386002033|ref|YP_005920332.1| - 0.023 15.2 0.2 1.4 9.7 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat SNF2_N PF00176.18 gi|386002033|ref|YP_005920332.1| - 0.024 13.4 0.0 1.7 7.3 0.0 2.2 1 1 1 2 2 2 0 SNF2 family N-terminal domain AAA_11 PF13086.1 gi|386002033|ref|YP_005920332.1| - 0.027 14.0 0.0 0.051 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|386002033|ref|YP_005920332.1| - 0.037 13.9 0.0 0.1 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|386002033|ref|YP_005920332.1| - 0.052 13.2 0.5 0.76 9.4 0.1 2.7 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|386002033|ref|YP_005920332.1| - 0.062 12.6 0.0 0.17 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|386002033|ref|YP_005920332.1| - 0.14 12.3 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF333 PF03891.10 gi|386002034|ref|YP_005920333.1| - 2.6e-10 39.9 12.8 1e-07 31.6 1.3 2.9 2 1 0 2 2 2 2 Domain of unknown function (DUF333) DUF3551 PF12071.3 gi|386002034|ref|YP_005920333.1| - 0.031 13.8 3.2 0.094 12.2 2.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3551) DUF4244 PF14029.1 gi|386002034|ref|YP_005920333.1| - 2.4 7.3 6.8 1.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) Aldedh PF00171.17 gi|386002035|ref|YP_005920334.1| - 3e-167 556.6 0.0 3.5e-167 556.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|386002035|ref|YP_005920334.1| - 0.035 13.3 0.0 0.073 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) Epimerase PF01370.16 gi|386002036|ref|YP_005920335.1| - 8.7e-42 143.1 0.0 1e-41 142.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|386002036|ref|YP_005920335.1| - 6.7e-20 70.9 0.0 8.8e-20 70.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|386002036|ref|YP_005920335.1| - 1.9e-16 59.8 0.0 2.1e-15 56.4 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|386002036|ref|YP_005920335.1| - 2.5e-13 49.5 0.0 2.9e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|386002036|ref|YP_005920335.1| - 1.1e-11 44.0 0.0 1.8e-10 40.2 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|386002036|ref|YP_005920335.1| - 1.5e-08 34.8 0.0 2.2e-08 34.2 0.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|386002036|ref|YP_005920335.1| - 7.4e-07 29.2 0.7 2.3e-06 27.6 0.0 2.0 3 0 0 3 3 3 1 short chain dehydrogenase NmrA PF05368.8 gi|386002036|ref|YP_005920335.1| - 0.00049 19.4 0.0 0.00075 18.8 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Saccharop_dh PF03435.13 gi|386002036|ref|YP_005920335.1| - 0.00056 19.0 0.0 0.00086 18.3 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|386002036|ref|YP_005920335.1| - 0.0087 16.0 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain ABM PF03992.11 gi|386002036|ref|YP_005920335.1| - 0.083 12.9 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase RHH_1 PF01402.16 gi|386002037|ref|YP_005920336.1| - 3.2e-11 42.6 0.3 6.6e-11 41.6 0.2 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|386002037|ref|YP_005920336.1| - 0.00014 21.5 0.2 0.00033 20.3 0.1 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix domain DUF4415 PF14384.1 gi|386002037|ref|YP_005920336.1| - 0.039 14.0 0.7 0.079 13.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4415) HTH_19 PF12844.2 gi|386002037|ref|YP_005920336.1| - 0.12 12.4 0.1 0.28 11.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sec2p PF06428.6 gi|386002037|ref|YP_005920336.1| - 0.35 10.7 3.0 14 5.6 0.5 2.2 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p FmdE PF02663.9 gi|386002038|ref|YP_005920337.1| - 7.9e-20 71.0 0.0 9.2e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ydhR PF08803.6 gi|386002039|ref|YP_005920338.1| - 5.8e-08 32.7 0.0 6.2e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Putative mono-oxygenase ydhR ABM PF03992.11 gi|386002039|ref|YP_005920338.1| - 0.028 14.4 0.3 0.038 14.0 0.2 1.2 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase Fer4 PF00037.22 gi|386002040|ref|YP_005920339.1| - 2.8e-11 42.4 9.2 4.4e-08 32.4 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386002040|ref|YP_005920339.1| - 1.1e-09 38.4 21.3 3.4e-09 36.9 7.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002040|ref|YP_005920339.1| - 2.2e-08 33.5 12.2 1.3e-07 31.1 1.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386002040|ref|YP_005920339.1| - 5e-08 32.6 8.5 1.7e-07 30.8 6.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386002040|ref|YP_005920339.1| - 1.2e-07 31.1 12.1 1.2e-05 24.9 1.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|386002040|ref|YP_005920339.1| - 4.2e-06 26.9 21.3 3.2e-05 24.1 7.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|386002040|ref|YP_005920339.1| - 1.2e-05 25.8 6.8 0.00091 19.7 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|386002040|ref|YP_005920339.1| - 3.1e-05 24.6 5.9 0.019 15.7 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|386002040|ref|YP_005920339.1| - 9.9e-05 22.1 13.7 0.00014 21.6 7.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386002040|ref|YP_005920339.1| - 0.0011 19.4 20.0 0.014 15.8 3.3 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|386002040|ref|YP_005920339.1| - 0.0049 16.7 2.3 0.0049 16.7 1.6 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002040|ref|YP_005920339.1| - 0.0057 16.6 14.1 0.038 14.0 1.4 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386002040|ref|YP_005920339.1| - 0.0063 16.7 15.8 0.018 15.3 2.7 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|386002040|ref|YP_005920339.1| - 0.015 15.6 16.2 0.59 10.5 2.3 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|386002040|ref|YP_005920339.1| - 0.027 14.8 1.0 0.027 14.8 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|386002040|ref|YP_005920339.1| - 0.15 12.3 16.3 0.23 11.8 1.8 2.6 1 1 3 4 4 4 0 4Fe-4S dicluster domain Trypsin_2 PF13365.1 gi|386002041|ref|YP_005920340.1| - 0.081 12.9 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Trypsin-like peptidase domain Peptidase_S7 PF00949.16 gi|386002041|ref|YP_005920340.1| - 0.096 12.0 0.2 0.15 11.4 0.2 1.3 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease Peptidase_S29 PF02907.10 gi|386002041|ref|YP_005920340.1| - 0.11 12.0 0.1 0.73 9.3 0.0 2.0 1 1 0 2 2 2 0 Hepatitis C virus NS3 protease DUF2149 PF09919.4 gi|386002042|ref|YP_005920341.1| - 7.7e-32 109.2 0.1 9.4e-32 108.9 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.11 gi|386002043|ref|YP_005920342.1| - 3.7e-09 36.3 0.0 5.2e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family DUF1049 PF06305.6 gi|386002043|ref|YP_005920342.1| - 0.0092 15.4 1.1 2.1 7.8 0.3 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF1049) VIT1 PF01988.14 gi|386002043|ref|YP_005920342.1| - 0.22 10.9 5.7 0.081 12.3 0.3 2.0 1 1 1 2 2 2 0 VIT family DUF2162 PF09930.4 gi|386002044|ref|YP_005920343.1| - 8.8e-59 198.3 13.9 9.8e-59 198.1 9.7 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) SieB PF14163.1 gi|386002044|ref|YP_005920343.1| - 0.34 10.4 3.3 4.6 6.7 1.3 2.5 1 1 1 2 2 2 0 Superinfection exclusion protein B DUF805 PF05656.9 gi|386002044|ref|YP_005920343.1| - 1.2 9.0 12.8 12 5.7 8.7 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF3792 PF12670.2 gi|386002044|ref|YP_005920343.1| - 1.7 8.4 17.6 0.39 10.5 6.4 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3792) ABC2_membrane_3 PF12698.2 gi|386002044|ref|YP_005920343.1| - 2 7.3 22.5 0.25 10.3 9.2 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein MARVEL PF01284.18 gi|386002044|ref|YP_005920343.1| - 5.5 6.7 16.8 0.087 12.6 4.4 2.2 2 1 0 2 2 2 0 Membrane-associating domain CobN-Mg_chel PF02514.11 gi|386002045|ref|YP_005920344.1| - 0 1226.7 0.0 0 1226.5 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LacAB_rpiB PF02502.13 gi|386002045|ref|YP_005920344.1| - 0.022 14.4 0.0 4.9 6.7 0.0 2.9 3 0 0 3 3 3 0 Ribose/Galactose Isomerase DUF4430 PF14478.1 gi|386002045|ref|YP_005920344.1| - 0.064 13.3 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4430) PQQ_3 PF13570.1 gi|386002046|ref|YP_005920345.1| - 5e-67 220.5 33.2 6e-11 42.2 0.1 9.4 8 1 1 9 9 9 9 PQQ-like domain PQQ_2 PF13360.1 gi|386002046|ref|YP_005920345.1| - 3.5e-53 180.4 13.5 2.6e-25 89.2 0.6 4.2 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|386002046|ref|YP_005920345.1| - 8.3e-37 122.9 14.7 2e-06 27.0 0.0 9.3 9 0 0 9 9 9 7 PQQ enzyme repeat DUF4430 PF14478.1 gi|386002046|ref|YP_005920345.1| - 6.7e-05 22.8 0.0 0.00015 21.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4430) SUKH-4 PF14435.1 gi|386002046|ref|YP_005920345.1| - 0.01 15.5 0.4 1.8 8.2 0.0 3.3 3 1 1 4 4 4 0 SUKH-4 immunity protein PQQ_3 PF13570.1 gi|386002047|ref|YP_005920346.1| - 6.2e-45 150.2 22.9 9.1e-06 25.7 0.0 8.4 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|386002047|ref|YP_005920346.1| - 2.4e-42 145.0 8.6 2.1e-22 79.7 0.3 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|386002047|ref|YP_005920346.1| - 7.5e-24 82.0 4.8 0.00072 18.9 0.0 8.8 9 0 0 9 9 9 6 PQQ enzyme repeat Kelch_2 PF07646.10 gi|386002047|ref|YP_005920346.1| - 0.00074 19.1 0.3 2.2 8.1 0.0 4.2 4 0 0 4 4 4 2 Kelch motif Kelch_6 PF13964.1 gi|386002047|ref|YP_005920346.1| - 0.0014 18.7 3.4 0.77 10.0 0.0 4.8 6 0 0 6 6 6 1 Kelch motif Kelch_1 PF01344.20 gi|386002047|ref|YP_005920346.1| - 0.035 13.6 4.7 3.8 7.1 0.0 4.5 5 0 0 5 5 5 0 Kelch motif Kelch_4 PF13418.1 gi|386002047|ref|YP_005920346.1| - 0.35 10.6 5.9 3 7.6 0.1 4.7 4 1 1 5 5 5 0 Galactose oxidase, central domain PQQ_2 PF13360.1 gi|386002048|ref|YP_005920347.1| - 9.5e-46 156.1 2.3 8e-22 77.8 0.0 4.0 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|386002048|ref|YP_005920347.1| - 2e-38 129.5 27.1 5.5e-06 26.4 0.3 8.3 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.16 gi|386002048|ref|YP_005920347.1| - 2.1e-16 58.5 11.8 0.00018 20.8 0.0 7.7 9 0 0 9 9 9 3 PQQ enzyme repeat SUKH-4 PF14435.1 gi|386002048|ref|YP_005920347.1| - 0.0027 17.4 1.4 3.1 7.4 0.0 3.5 2 1 1 3 3 3 2 SUKH-4 immunity protein Prenyltrans_2 PF13249.1 gi|386002049|ref|YP_005920348.1| - 4.5e-28 97.9 1.5 1.3e-17 64.1 0.6 2.6 2 0 0 2 2 2 2 Prenyltransferase-like DUF11 PF01345.13 gi|386002049|ref|YP_005920348.1| - 1.1e-25 89.4 7.4 6.5e-08 32.5 0.0 5.9 5 0 0 5 5 5 4 Domain of unknown function DUF11 Prenyltrans_1 PF13243.1 gi|386002049|ref|YP_005920348.1| - 1.1e-20 73.6 0.1 2.7e-10 40.2 0.3 3.0 2 1 0 2 2 2 2 Prenyltransferase-like Prenyltrans PF00432.16 gi|386002049|ref|YP_005920348.1| - 1.1e-13 50.4 3.2 3.2e-06 26.5 0.0 4.3 4 0 0 4 4 4 3 Prenyltransferase and squalene oxidase repeat DUF4430 PF14478.1 gi|386002049|ref|YP_005920348.1| - 2.8e-08 33.7 0.0 0.017 15.1 0.0 4.6 3 1 0 3 3 3 2 Domain of unknown function (DUF4430) Chlam_OMP6 PF03504.8 gi|386002049|ref|YP_005920348.1| - 1.1e-06 28.8 1.1 1.2 9.4 0.0 5.6 5 0 0 5 5 5 2 Chlamydia cysteine-rich outer membrane protein 6 CarboxypepD_reg PF13620.1 gi|386002049|ref|YP_005920348.1| - 0.0001 22.2 22.6 0.00071 19.5 0.1 5.6 5 0 0 5 5 5 3 Carboxypeptidase regulatory-like domain A2M_comp PF07678.9 gi|386002049|ref|YP_005920348.1| - 0.089 12.0 0.0 49 3.0 0.0 3.3 3 0 0 3 3 3 0 A-macroglobulin complement component Fer4_19 PF06902.6 gi|386002050|ref|YP_005920349.1| - 2.6e-26 91.2 0.0 4.5e-26 90.4 0.0 1.4 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster zf-CDGSH PF09360.5 gi|386002050|ref|YP_005920349.1| - 1.6e-14 53.4 0.2 2.4e-14 52.8 0.1 1.3 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type Fer4_15 PF13459.1 gi|386002050|ref|YP_005920349.1| - 0.0034 17.9 0.1 0.015 15.8 0.1 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|386002050|ref|YP_005920349.1| - 0.11 12.4 1.2 0.43 10.5 0.0 2.5 3 0 0 3 3 3 0 4Fe-4S binding domain PBP_like_2 PF12849.2 gi|386002051|ref|YP_005920350.1| - 3e-20 72.8 0.0 3.9e-20 72.4 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|386002051|ref|YP_005920350.1| - 5.9e-12 45.7 0.0 8e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1102 PF06510.6 gi|386002051|ref|YP_005920350.1| - 0.037 13.8 0.0 1.3 8.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1102) LysR_substrate PF03466.15 gi|386002051|ref|YP_005920350.1| - 0.038 13.0 0.0 0.064 12.3 0.0 1.5 1 0 0 1 1 1 0 LysR substrate binding domain SBP_bac_1 PF01547.20 gi|386002051|ref|YP_005920350.1| - 0.09 12.4 0.0 10 5.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|386002052|ref|YP_005920351.1| - 9e-11 41.6 18.6 9e-11 41.6 12.9 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component NicO PF03824.11 gi|386002052|ref|YP_005920351.1| - 2.9 7.1 19.2 0.051 12.8 3.0 2.4 3 0 0 3 3 3 0 High-affinity nickel-transport protein ABC_tran PF00005.22 gi|386002053|ref|YP_005920352.1| - 6.4e-32 110.7 0.0 8.6e-32 110.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386002053|ref|YP_005920352.1| - 4e-11 43.4 0.0 0.0001 22.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|386002053|ref|YP_005920352.1| - 1.9e-05 24.7 1.6 0.00016 21.7 1.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|386002053|ref|YP_005920352.1| - 2.7e-05 24.2 0.2 0.00045 20.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|386002053|ref|YP_005920352.1| - 4.4e-05 23.0 0.2 0.094 12.1 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain SbcCD_C PF13558.1 gi|386002053|ref|YP_005920352.1| - 0.00025 20.8 0.5 0.0021 17.9 0.3 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|386002053|ref|YP_005920352.1| - 0.00091 18.5 0.0 0.04 13.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|386002053|ref|YP_005920352.1| - 0.005 16.3 0.0 0.0098 15.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|386002053|ref|YP_005920352.1| - 0.0073 16.1 0.5 0.031 14.1 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|386002053|ref|YP_005920352.1| - 0.0081 16.9 0.0 0.019 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|386002053|ref|YP_005920352.1| - 0.0084 15.7 0.1 0.12 11.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|386002053|ref|YP_005920352.1| - 0.011 15.4 0.7 0.27 10.8 0.2 2.6 2 1 1 3 3 3 0 NACHT domain AAA_18 PF13238.1 gi|386002053|ref|YP_005920352.1| - 0.013 15.8 0.0 0.049 13.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|386002053|ref|YP_005920352.1| - 0.022 14.4 0.0 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|386002053|ref|YP_005920352.1| - 0.025 13.9 1.0 0.069 12.5 0.5 2.1 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|386002053|ref|YP_005920352.1| - 0.026 13.9 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.1 gi|386002053|ref|YP_005920352.1| - 0.031 14.6 0.0 0.046 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|386002053|ref|YP_005920352.1| - 0.039 12.7 1.0 0.063 12.0 0.7 1.3 1 0 0 1 1 1 0 ArgK protein T2SE PF00437.15 gi|386002053|ref|YP_005920352.1| - 0.04 12.8 0.0 0.083 11.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|386002053|ref|YP_005920352.1| - 0.044 13.5 0.7 0.044 13.5 0.5 2.8 3 1 0 3 3 3 0 Part of AAA domain DUF258 PF03193.11 gi|386002053|ref|YP_005920352.1| - 0.059 12.5 0.0 0.17 11.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DEAD PF00270.24 gi|386002053|ref|YP_005920352.1| - 0.078 12.4 0.0 0.13 11.7 0.0 1.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase cobW PF02492.14 gi|386002053|ref|YP_005920352.1| - 0.083 12.3 0.1 0.2 11.1 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|386002053|ref|YP_005920352.1| - 0.083 12.8 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|386002053|ref|YP_005920352.1| - 0.09 12.4 0.1 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_14 PF13173.1 gi|386002053|ref|YP_005920352.1| - 0.17 11.7 0.0 0.64 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|386002053|ref|YP_005920352.1| - 0.2 11.8 0.6 4.2 7.5 0.1 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Pentapeptide PF00805.17 gi|386002054|ref|YP_005920353.1| - 1.7e-74 244.2 52.0 3.4e-14 51.6 1.7 6.1 2 2 5 7 7 7 7 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|386002054|ref|YP_005920353.1| - 5.6e-37 125.4 0.0 2e-10 40.2 0.0 3.4 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|386002054|ref|YP_005920353.1| - 1.4e-26 92.1 0.0 2.9e-05 23.8 0.0 5.2 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) UPF0118 PF01594.11 gi|386002055|ref|YP_005920354.1| - 1.8e-39 135.6 39.7 7.7e-39 133.5 27.5 1.7 1 1 0 1 1 1 1 Domain of unknown function DUF20 DUF3357 PF11837.3 gi|386002055|ref|YP_005920354.1| - 0.18 11.6 0.0 0.66 9.8 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) MacB_PCD PF12704.2 gi|386002055|ref|YP_005920354.1| - 0.24 10.9 0.0 0.24 10.9 0.0 1.8 2 0 0 2 2 2 0 MacB-like periplasmic core domain TMEM18 PF14770.1 gi|386002055|ref|YP_005920354.1| - 1.5 8.3 13.0 0.024 14.1 2.4 2.6 2 1 1 3 3 3 0 Transmembrane protein 18 TFX_C PF14601.1 gi|386002056|ref|YP_005920355.1| - 3.2e-24 84.5 0.0 4.6e-24 84.0 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|386002056|ref|YP_005920355.1| - 3.3e-07 29.5 2.3 7.4e-07 28.3 1.6 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|386002056|ref|YP_005920355.1| - 2.1e-06 27.0 1.2 7.6e-06 25.3 0.8 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|386002056|ref|YP_005920355.1| - 2.2e-05 24.1 0.2 4.4e-05 23.1 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|386002056|ref|YP_005920355.1| - 2.3e-05 23.8 1.9 3.7e-05 23.2 0.5 1.9 1 1 1 2 2 2 1 Homeodomain-like domain GerE PF00196.14 gi|386002056|ref|YP_005920355.1| - 0.00014 21.0 0.2 0.00025 20.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_31 PF13560.1 gi|386002056|ref|YP_005920355.1| - 0.00042 20.4 2.7 0.0018 18.4 1.9 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|386002056|ref|YP_005920355.1| - 0.00091 19.0 0.2 0.0022 17.8 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_28 PF13518.1 gi|386002056|ref|YP_005920355.1| - 0.007 16.3 0.8 0.017 15.1 0.1 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|386002056|ref|YP_005920355.1| - 0.0096 15.4 0.1 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0122 PF04297.9 gi|386002056|ref|YP_005920355.1| - 0.02 14.8 0.0 0.035 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_19 PF12844.2 gi|386002056|ref|YP_005920355.1| - 0.024 14.6 0.1 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|386002056|ref|YP_005920355.1| - 0.037 13.9 0.1 0.081 12.8 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|386002056|ref|YP_005920355.1| - 0.092 12.4 0.5 0.26 10.9 0.1 2.0 2 0 0 2 2 2 0 MarR family Crp PF00325.15 gi|386002056|ref|YP_005920355.1| - 0.1 12.0 0.1 0.27 10.7 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_Crp_2 PF13545.1 gi|386002056|ref|YP_005920355.1| - 0.11 12.3 0.4 0.44 10.3 0.1 2.1 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain Rop PF01815.11 gi|386002057|ref|YP_005920356.1| - 0.21 11.0 1.0 0.58 9.6 0.3 1.9 2 1 0 2 2 2 0 Rop protein CutA1 PF03091.10 gi|386002058|ref|YP_005920357.1| - 5e-33 112.8 0.0 5.6e-33 112.6 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein UXS1_N PF11803.3 gi|386002058|ref|YP_005920357.1| - 0.011 15.5 0.0 0.014 15.0 0.0 1.1 1 0 0 1 1 1 0 UDP-glucuronate decarboxylase N-terminal HIT PF01230.18 gi|386002059|ref|YP_005920358.1| - 1.9e-15 57.1 0.0 2.6e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|386002059|ref|YP_005920358.1| - 1.1e-10 41.6 0.0 1.5e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|386002059|ref|YP_005920358.1| - 0.0051 16.4 0.0 0.0069 16.0 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 POR_N PF01855.14 gi|386002060|ref|YP_005920359.1| - 6.9e-46 156.6 0.0 9.2e-46 156.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|386002060|ref|YP_005920359.1| - 1.4e-30 106.4 0.1 2.4e-30 105.6 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|386002060|ref|YP_005920359.1| - 1.6e-08 34.2 1.5 1e-06 28.3 0.5 2.5 1 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|386002060|ref|YP_005920359.1| - 0.033 14.1 0.0 0.065 13.1 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|386002061|ref|YP_005920360.1| - 5.7e-29 100.6 0.0 7.9e-29 100.2 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|386002061|ref|YP_005920360.1| - 3.5e-10 39.6 0.0 5.6e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal XFP_N PF09364.5 gi|386002061|ref|YP_005920360.1| - 0.064 11.8 0.0 0.095 11.2 0.0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain Rubredoxin PF00301.15 gi|386002062|ref|YP_005920361.1| - 5.1e-26 90.2 4.1 5.6e-26 90.1 2.9 1.0 1 0 0 1 1 1 1 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|386002062|ref|YP_005920361.1| - 0.00014 21.1 0.8 0.22 10.8 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zf-Sec23_Sec24 PF04810.10 gi|386002062|ref|YP_005920361.1| - 0.0008 18.9 0.0 0.1 12.1 0.0 2.1 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger A2L_zn_ribbon PF08792.5 gi|386002062|ref|YP_005920361.1| - 0.0012 18.2 0.6 0.24 10.8 0.0 2.1 2 0 0 2 2 2 1 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|386002062|ref|YP_005920361.1| - 0.0021 17.2 1.1 0.19 10.9 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-RanBP PF00641.13 gi|386002062|ref|YP_005920361.1| - 0.0044 16.0 3.1 0.031 13.3 0.3 2.1 2 0 0 2 2 2 1 Zn-finger in Ran binding protein and others ADK_lid PF05191.9 gi|386002062|ref|YP_005920361.1| - 0.0049 16.5 3.2 0.38 10.4 0.1 2.2 2 0 0 2 2 2 2 Adenylate kinase, active site lid zf-H2C2_2 PF13465.1 gi|386002062|ref|YP_005920361.1| - 0.007 16.6 0.8 2 8.8 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Desulfoferrod_N PF06397.7 gi|386002062|ref|YP_005920361.1| - 0.009 15.3 0.7 1.4 8.3 0.3 2.1 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain zf-nanos PF05741.8 gi|386002062|ref|YP_005920361.1| - 0.011 15.6 0.8 0.93 9.5 0.0 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain Nudix_N_2 PF14803.1 gi|386002062|ref|YP_005920361.1| - 0.019 14.6 3.5 0.19 11.4 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|386002062|ref|YP_005920361.1| - 0.025 14.2 0.2 4.6 6.9 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|386002062|ref|YP_005920361.1| - 0.032 14.1 1.7 1.2 9.1 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|386002062|ref|YP_005920361.1| - 0.039 13.5 3.2 2.6 7.7 0.3 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RRN7 PF11781.3 gi|386002062|ref|YP_005920361.1| - 0.039 13.4 2.0 1.8 8.0 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Elf1 PF05129.8 gi|386002062|ref|YP_005920361.1| - 0.04 13.6 0.1 1.1 9.0 0.0 2.0 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-ISL3 PF14690.1 gi|386002062|ref|YP_005920361.1| - 0.062 13.3 1.1 3.3 7.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_4 PF13894.1 gi|386002062|ref|YP_005920361.1| - 0.063 13.6 0.6 4.8 7.7 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|386002062|ref|YP_005920361.1| - 0.082 12.4 1.1 3.5 7.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF3039 PF11238.3 gi|386002062|ref|YP_005920361.1| - 0.09 12.2 0.5 3.5 7.1 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3039) zf-C2H2_3 PF13878.1 gi|386002062|ref|YP_005920361.1| - 0.1 12.2 1.4 0.84 9.2 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO RNA_POL_M_15KD PF02150.11 gi|386002062|ref|YP_005920361.1| - 0.12 12.0 2.4 4 7.2 0.4 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|386002062|ref|YP_005920361.1| - 0.13 12.1 1.1 13 5.6 0.1 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-MIZ PF02891.15 gi|386002062|ref|YP_005920361.1| - 0.14 11.6 1.0 0.33 10.4 0.1 1.8 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger zf-C2H2 PF00096.21 gi|386002062|ref|YP_005920361.1| - 0.19 12.1 2.5 10 6.7 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF1610 PF07754.6 gi|386002062|ref|YP_005920361.1| - 0.21 11.7 2.8 3.8 7.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.2 gi|386002062|ref|YP_005920361.1| - 0.22 11.3 1.3 4.9 7.0 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-HIT PF04438.11 gi|386002062|ref|YP_005920361.1| - 0.42 10.3 3.6 3.6 7.3 0.6 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-C2H2_6 PF13912.1 gi|386002062|ref|YP_005920361.1| - 1.2 9.0 4.1 19 5.3 0.4 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Cys_rich_CPCC PF14206.1 gi|386002062|ref|YP_005920361.1| - 2.1 7.9 5.6 3.5 7.2 0.3 2.1 1 1 0 2 2 2 0 Cysteine-rich CPCC DUF282 PF03380.9 gi|386002062|ref|YP_005920361.1| - 8.8 6.1 7.6 0.4 10.4 0.9 1.9 2 0 0 2 2 2 0 Caenorhabditis protein of unknown function, DUF282 Ferritin PF00210.19 gi|386002063|ref|YP_005920362.1| - 3.6e-40 137.0 0.8 4.1e-40 136.8 0.6 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF4432 PF14486.1 gi|386002063|ref|YP_005920362.1| - 0.079 11.5 0.0 0.16 10.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4432) NAD_binding_2 PF03446.10 gi|386002064|ref|YP_005920363.1| - 9.2e-37 126.3 0.0 1.5e-36 125.7 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|386002064|ref|YP_005920363.1| - 4.4e-09 35.9 0.0 5.6e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|386002064|ref|YP_005920363.1| - 7.6e-06 25.1 0.0 1.2e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|386002064|ref|YP_005920363.1| - 0.00024 21.4 0.0 0.00059 20.2 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|386002064|ref|YP_005920363.1| - 0.0087 16.0 0.0 0.038 13.9 0.0 1.9 2 0 0 2 2 2 1 NADH(P)-binding NAD_binding_11 PF14833.1 gi|386002064|ref|YP_005920363.1| - 0.078 13.0 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DUF204 PF02659.10 gi|386002065|ref|YP_005920364.1| - 3.8e-34 116.6 25.6 8.2e-19 67.4 5.7 2.2 2 0 0 2 2 2 2 Domain of unknown function DUF Methyltransf_11 PF08241.7 gi|386002066|ref|YP_005920365.1| - 8.2e-16 58.2 0.0 1.4e-15 57.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386002066|ref|YP_005920365.1| - 4.5e-07 29.2 0.1 1.3e-06 27.7 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|386002066|ref|YP_005920365.1| - 1e-06 28.5 0.0 1.7e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386002066|ref|YP_005920365.1| - 1.5e-06 28.6 0.0 2.6e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386002066|ref|YP_005920365.1| - 1.5e-05 25.2 0.0 2.9e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386002066|ref|YP_005920365.1| - 0.0007 20.1 0.0 0.0026 18.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386002066|ref|YP_005920365.1| - 0.00098 18.7 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|386002066|ref|YP_005920365.1| - 0.038 12.3 0.0 0.047 12.0 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase GSH-S_N PF02951.9 gi|386002066|ref|YP_005920365.1| - 0.16 11.7 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, N-terminal domain DUF772 PF05598.6 gi|386002068|ref|YP_005920367.1| - 2.3e-21 75.4 0.1 5.2e-21 74.3 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|386002068|ref|YP_005920367.1| - 4.3e-12 46.0 0.2 8e-12 45.1 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|386002068|ref|YP_005920367.1| - 1.4e-05 24.7 0.0 3.3e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease Aminotran_1_2 PF00155.16 gi|386002069|ref|YP_005920368.1| - 9e-62 209.1 0.0 1e-61 208.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|386002069|ref|YP_005920368.1| - 0.00031 19.1 0.0 0.00046 18.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|386002069|ref|YP_005920368.1| - 0.00041 19.4 0.0 0.00065 18.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|386002069|ref|YP_005920368.1| - 0.1 11.3 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V DMRL_synthase PF00885.14 gi|386002070|ref|YP_005920369.1| - 6.7e-37 126.3 0.5 7.6e-37 126.1 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Metallophos_3 PF14582.1 gi|386002070|ref|YP_005920369.1| - 0.064 12.4 0.1 0.16 11.1 0.1 1.6 2 1 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Aminotran_4 PF01063.14 gi|386002071|ref|YP_005920370.1| - 1.6e-50 171.7 0.0 1.8e-50 171.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV AD PF09793.4 gi|386002071|ref|YP_005920370.1| - 0.065 13.0 0.1 0.16 11.8 0.0 1.6 2 0 0 2 2 2 0 Anticodon-binding domain UPF0047 PF01894.12 gi|386002072|ref|YP_005920371.1| - 4.1e-39 133.0 0.0 4.6e-39 132.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Lactamase_B_2 PF12706.2 gi|386002074|ref|YP_005920373.1| - 3.5e-09 36.4 0.0 7.3e-09 35.4 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|386002074|ref|YP_005920373.1| - 6.5e-07 29.2 5.0 2.1e-06 27.5 0.3 2.5 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily Transglut_core PF01841.14 gi|386002076|ref|YP_005920375.1| - 3.6e-14 52.9 0.1 6.5e-14 52.1 0.1 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily LTD PF00932.14 gi|386002076|ref|YP_005920375.1| - 0.00048 20.1 0.0 0.0015 18.6 0.0 1.9 1 0 0 1 1 1 1 Lamin Tail Domain DUF553 PF04473.7 gi|386002076|ref|YP_005920375.1| - 0.0022 17.3 0.0 0.14 11.4 0.0 2.6 1 1 0 1 1 1 1 Transglutaminase-like domain Acetyltransf_2 PF00797.12 gi|386002076|ref|YP_005920375.1| - 0.032 13.8 0.0 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 N-acetyltransferase Y_Y_Y PF07495.8 gi|386002076|ref|YP_005920375.1| - 0.31 10.8 1.0 25 4.7 0.1 2.6 2 0 0 2 2 2 0 Y_Y_Y domain Cation_efflux PF01545.16 gi|386002077|ref|YP_005920376.1| - 2.5e-48 164.6 3.8 2.9e-48 164.3 2.6 1.1 1 0 0 1 1 1 1 Cation efflux family Nitro_FeMo-Co PF02579.12 gi|386002077|ref|YP_005920376.1| - 1.7e-14 53.6 0.0 3.4e-14 52.6 0.0 1.5 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor AHS1 PF02682.11 gi|386002077|ref|YP_005920376.1| - 0.021 14.2 0.0 0.22 10.9 0.0 2.1 2 0 0 2 2 2 0 Allophanate hydrolase subunit 1 VCBS PF13517.1 gi|386002078|ref|YP_005920377.1| - 2.2e-38 130.3 88.4 2.8e-07 30.7 3.1 8.1 2 2 9 11 11 11 11 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|386002078|ref|YP_005920377.1| - 6.6e-34 114.7 62.7 0.00071 19.1 0.6 11.2 11 0 0 11 11 11 10 FG-GAP repeat DUF1416 PF07210.7 gi|386002078|ref|YP_005920377.1| - 6.5e-12 44.8 24.2 0.9 9.1 0.1 10.2 11 0 0 11 11 11 6 Protein of unknown function (DUF1416) TcdB_toxin_midN PF12256.3 gi|386002078|ref|YP_005920377.1| - 9.7e-12 44.6 12.3 3.1 7.2 0.0 9.6 4 2 5 10 10 10 5 Insecticide toxin TcdB middle/N-terminal region Big_3_2 PF12245.3 gi|386002078|ref|YP_005920377.1| - 2.9e-10 39.5 0.0 51 3.5 0.0 9.3 10 0 0 10 10 10 0 Bacterial Ig-like domain (group 3) DICT PF10069.4 gi|386002078|ref|YP_005920377.1| - 0.00078 18.9 0.0 78 2.8 0.0 7.2 10 1 1 11 11 11 0 Sensory domain found in DIguanylate Cyclases & Two-component systems tRNA_anti-codon PF01336.20 gi|386002078|ref|YP_005920377.1| - 0.0052 16.6 0.1 2.9e+02 1.4 0.0 6.7 10 0 0 10 10 10 0 OB-fold nucleic acid binding domain DUF899 PF05988.7 gi|386002078|ref|YP_005920377.1| - 0.13 11.7 9.6 75 2.6 0.0 7.3 5 4 3 9 9 9 0 Bacterial protein of unknown function (DUF899) CBM_4_9 PF02018.12 gi|386002078|ref|YP_005920377.1| - 9.3 6.2 7.4 2.9e+02 1.4 0.0 5.8 3 2 6 9 9 9 0 Carbohydrate binding domain MFS_1 PF07690.11 gi|386002080|ref|YP_005920379.1| - 7.7e-55 186.0 48.4 7.7e-55 186.0 33.5 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|386002080|ref|YP_005920379.1| - 4.4e-10 38.2 19.5 7.9e-09 34.1 4.9 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.2 gi|386002080|ref|YP_005920379.1| - 0.00041 20.0 0.1 0.0032 17.2 0.0 2.6 1 0 0 1 1 1 1 MFS_1 like family Adipogenin PF15202.1 gi|386002080|ref|YP_005920379.1| - 0.13 12.1 0.2 0.31 10.9 0.2 1.6 1 0 0 1 1 1 0 Adipogenin Nitro_FeMo-Co PF02579.12 gi|386002081|ref|YP_005920380.1| - 1.1e-24 86.2 0.2 1.5e-24 85.8 0.1 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor HAD PF12710.2 gi|386002081|ref|YP_005920380.1| - 0.036 14.2 0.0 0.037 14.2 0.0 1.1 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase NIF3 PF01784.13 gi|386002081|ref|YP_005920380.1| - 0.051 13.1 0.3 0.062 12.8 0.2 1.1 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) 2-Hacid_dh_C PF02826.14 gi|386002081|ref|YP_005920380.1| - 0.12 11.4 0.1 0.15 11.2 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|386002081|ref|YP_005920380.1| - 0.12 12.1 3.0 0.4 10.4 0.4 2.0 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, dimerisation domain DUF4623 PF15416.1 gi|386002081|ref|YP_005920380.1| - 0.13 10.6 0.1 0.15 10.3 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4623) API5 PF05918.6 gi|386002081|ref|YP_005920380.1| - 0.5 8.8 5.9 0.48 8.8 4.1 1.1 1 0 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) Nitro_FeMo-Co PF02579.12 gi|386002082|ref|YP_005920381.1| - 2.1e-21 75.8 0.0 2.6e-21 75.4 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF11 PF01345.13 gi|386002084|ref|YP_005920383.1| - 4.8e-14 52.1 2.2 2.1e-05 24.4 0.0 3.6 3 0 0 3 3 3 3 Domain of unknown function DUF11 CMD PF02627.15 gi|386002088|ref|YP_005920387.1| - 3.7e-15 55.5 0.8 5e-15 55.1 0.6 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.8 gi|386002088|ref|YP_005920387.1| - 0.0064 15.2 0.0 0.0078 14.9 0.0 1.1 1 0 0 1 1 1 1 PA26 p53-induced protein (sestrin) Rad50_zn_hook PF04423.9 gi|386002088|ref|YP_005920387.1| - 0.011 15.1 0.1 0.027 13.9 0.1 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif MCR_C PF04609.7 gi|386002089|ref|YP_005920388.1| - 3.3e-103 344.1 0.1 3.8e-103 343.9 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C Glyco_transf_28 PF03033.15 gi|386002089|ref|YP_005920388.1| - 0.096 12.4 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain DUF2113 PF09886.4 gi|386002090|ref|YP_005920389.1| - 3e-52 176.5 0.0 3.3e-52 176.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.15 gi|386002091|ref|YP_005920390.1| - 2e-58 197.8 4.6 2.8e-58 197.3 3.2 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family MreB_Mbl PF06723.8 gi|386002091|ref|YP_005920390.1| - 0.0045 15.6 0.4 0.012 14.2 0.1 1.8 3 0 0 3 3 3 1 MreB/Mbl protein FtsA PF14450.1 gi|386002091|ref|YP_005920390.1| - 0.028 14.2 1.5 7.1 6.4 0.0 3.0 3 1 0 3 3 3 0 Cell division protein FtsA Hydant_A_N PF05378.8 gi|386002091|ref|YP_005920390.1| - 0.074 12.5 0.3 0.074 12.5 0.2 2.7 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region PilM_2 PF11104.3 gi|386002091|ref|YP_005920390.1| - 0.084 11.7 0.1 0.19 10.6 0.0 1.5 2 0 0 2 2 2 0 Type IV pilus assembly protein PilM; MutL PF13941.1 gi|386002091|ref|YP_005920390.1| - 0.22 9.7 4.8 1.2 7.3 0.4 2.3 2 0 0 2 2 2 0 MutL protein DUF2112 PF09885.4 gi|386002092|ref|YP_005920391.1| - 5.6e-61 204.3 0.0 6.3e-61 204.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.4 gi|386002093|ref|YP_005920392.1| - 1e-42 143.9 0.0 1.4e-42 143.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Pro_isomerase PF00160.16 gi|386002094|ref|YP_005920393.1| - 6.7e-05 23.1 0.0 1.5 8.9 0.0 4.0 3 1 0 3 3 3 2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABC_tran PF00005.22 gi|386002095|ref|YP_005920394.1| - 1.2e-49 168.1 0.0 5.5e-27 94.7 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|386002095|ref|YP_005920394.1| - 5.9e-07 29.7 0.0 4.6 7.1 0.0 4.1 3 1 1 4 4 4 1 AAA domain DUF258 PF03193.11 gi|386002095|ref|YP_005920394.1| - 2.2e-05 23.6 0.0 0.085 12.0 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|386002095|ref|YP_005920394.1| - 2.8e-05 23.4 1.6 0.03 13.5 0.0 3.5 3 1 0 4 4 4 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|386002095|ref|YP_005920394.1| - 3e-05 23.4 0.8 0.2 11.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|386002095|ref|YP_005920394.1| - 0.00013 21.4 0.9 0.27 10.6 0.0 3.1 3 1 0 3 3 3 2 AAA-like domain SbcCD_C PF13558.1 gi|386002095|ref|YP_005920394.1| - 0.00034 20.4 0.0 1.8 8.5 0.0 3.3 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|386002095|ref|YP_005920394.1| - 0.00057 20.7 0.3 0.036 14.8 0.1 2.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|386002095|ref|YP_005920394.1| - 0.00095 19.1 3.2 0.19 11.7 0.0 2.8 3 1 0 3 3 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|386002095|ref|YP_005920394.1| - 0.0013 17.9 0.0 0.015 14.3 0.0 2.5 3 0 0 3 3 3 1 AAA ATPase domain AAA_33 PF13671.1 gi|386002095|ref|YP_005920394.1| - 0.0024 17.7 0.0 0.091 12.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|386002095|ref|YP_005920394.1| - 0.0045 16.4 0.2 0.097 12.1 0.0 2.5 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|386002095|ref|YP_005920394.1| - 0.005 16.9 1.0 5.3 7.1 0.2 3.0 3 0 0 3 3 2 0 AAA domain DUF87 PF01935.12 gi|386002095|ref|YP_005920394.1| - 0.0065 16.3 1.1 0.35 10.6 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|386002095|ref|YP_005920394.1| - 0.0083 16.4 0.7 0.66 10.2 0.1 2.5 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|386002095|ref|YP_005920394.1| - 0.0089 15.5 0.5 0.33 10.4 0.1 2.7 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.17 gi|386002095|ref|YP_005920394.1| - 0.01 14.7 1.1 1.4 7.7 0.2 2.4 2 0 0 2 2 2 0 NB-ARC domain AAA_25 PF13481.1 gi|386002095|ref|YP_005920394.1| - 0.012 14.9 0.2 3.2 7.1 0.0 2.8 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.18 gi|386002095|ref|YP_005920394.1| - 0.016 15.1 0.1 7.6 6.5 0.0 3.3 3 0 0 3 3 3 0 50S ribosome-binding GTPase Mg_chelatase PF01078.16 gi|386002095|ref|YP_005920394.1| - 0.022 13.9 0.3 2.3 7.3 0.1 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI UPF0079 PF02367.12 gi|386002095|ref|YP_005920394.1| - 0.032 13.8 0.1 0.17 11.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 zf-CSL PF05207.8 gi|386002095|ref|YP_005920394.1| - 0.062 12.8 0.2 1.8 8.0 0.0 2.4 2 0 0 2 2 2 0 CSL zinc finger PRK PF00485.13 gi|386002095|ref|YP_005920394.1| - 0.073 12.6 0.0 2 7.9 0.0 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.1 gi|386002095|ref|YP_005920394.1| - 0.099 12.2 0.0 7.1 6.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|386002095|ref|YP_005920394.1| - 0.11 12.1 2.4 0.64 9.7 0.3 2.6 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.1 gi|386002095|ref|YP_005920394.1| - 0.11 10.8 1.8 3.9 5.8 0.0 2.5 3 0 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|386002095|ref|YP_005920394.1| - 0.6 9.7 3.2 13 5.3 0.1 2.5 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.1 gi|386002095|ref|YP_005920394.1| - 1.3 8.9 3.4 3.6 7.5 0.5 2.8 4 0 0 4 4 3 0 AAA domain cobW PF02492.14 gi|386002095|ref|YP_005920394.1| - 3.8 6.9 6.1 16 4.9 0.4 3.6 4 0 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain Flavoprotein PF02441.14 gi|386002096|ref|YP_005920395.1| - 3e-30 104.5 0.0 4.3e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein DS PF01916.12 gi|386002097|ref|YP_005920396.1| - 6.4e-89 298.0 0.0 7.6e-89 297.7 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Oxidored_q4 PF00507.14 gi|386002098|ref|YP_005920397.1| - 1.1e-22 79.7 8.1 3.3e-22 78.2 4.8 1.9 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MatC_N PF07158.6 gi|386002098|ref|YP_005920397.1| - 0.083 12.6 0.4 0.083 12.6 0.3 2.6 1 1 1 2 2 2 0 Dicarboxylate carrier protein MatC N-terminus Oxidored_q6 PF01058.17 gi|386002099|ref|YP_005920398.1| - 8.7e-20 70.6 0.0 1.5e-19 69.9 0.0 1.4 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|386002100|ref|YP_005920399.1| - 5.5e-59 199.3 0.1 3.1e-41 141.1 0.0 2.6 2 1 1 3 3 3 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|386002100|ref|YP_005920399.1| - 1.3e-27 96.0 0.0 2.4e-27 95.1 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|386002100|ref|YP_005920399.1| - 2.9e-08 32.9 0.0 7.5e-07 28.2 0.0 2.3 1 1 1 2 2 2 1 Nickel-dependent hydrogenase NADHdh PF00146.16 gi|386002101|ref|YP_005920400.1| - 7e-93 311.0 15.9 8.7e-93 310.7 11.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|386002102|ref|YP_005920401.1| - 2.4e-11 42.7 22.5 7.7e-06 25.3 6.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386002102|ref|YP_005920401.1| - 1.4e-10 41.3 14.0 3.3e-10 40.1 9.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386002102|ref|YP_005920401.1| - 7.2e-10 38.5 10.6 1.7e-09 37.2 7.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386002102|ref|YP_005920401.1| - 1.1e-08 34.5 12.4 0.00012 21.7 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|386002102|ref|YP_005920401.1| - 4.5e-08 33.2 27.7 3.1e-06 27.3 10.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386002102|ref|YP_005920401.1| - 6.1e-07 29.1 28.2 6.7e-05 22.6 10.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002102|ref|YP_005920401.1| - 9e-06 25.3 21.0 0.0048 16.7 5.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386002102|ref|YP_005920401.1| - 9.2e-06 26.3 10.3 9.2e-06 26.3 7.1 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|386002102|ref|YP_005920401.1| - 9.3e-06 25.5 12.6 9.3e-06 25.5 8.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386002102|ref|YP_005920401.1| - 7.3e-05 23.1 12.5 0.0099 16.2 1.0 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386002102|ref|YP_005920401.1| - 0.00026 21.2 15.4 0.0064 16.8 1.2 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386002102|ref|YP_005920401.1| - 0.00047 20.2 18.2 0.0091 16.2 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386002102|ref|YP_005920401.1| - 0.12 12.9 23.3 0.12 12.9 2.5 3.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain DNA_pol3_a_NII PF11490.3 gi|386002102|ref|YP_005920401.1| - 1.7 8.2 8.6 3.4 7.3 5.2 1.9 2 0 0 2 2 2 0 DNA polymerase III polC-type N-terminus II Fer4_3 PF12798.2 gi|386002102|ref|YP_005920401.1| - 7 7.4 26.6 0.34 11.5 7.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|386002102|ref|YP_005920401.1| - 9.2 6.7 24.3 0.17 12.2 2.5 3.5 3 1 0 3 3 3 0 4Fe-4S single cluster domain NARP1 PF12569.3 gi|386002102|ref|YP_005920401.1| - 9.5 4.8 13.3 11 4.5 9.2 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 Oxidored_q3 PF00499.15 gi|386002103|ref|YP_005920402.1| - 1.7e-15 57.0 10.0 1.7e-15 57.0 6.9 1.5 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|386002103|ref|YP_005920402.1| - 0.083 12.8 11.8 0.086 12.8 7.7 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4040) DUF3043 PF11241.3 gi|386002103|ref|YP_005920402.1| - 0.37 10.3 2.9 0.29 10.7 1.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3043) Oxidored_q3 PF00499.15 gi|386002104|ref|YP_005920403.1| - 0.00014 21.6 0.6 0.00019 21.2 0.4 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF347 PF03988.7 gi|386002104|ref|YP_005920403.1| - 0.87 9.5 3.7 9.7 6.1 0.1 2.3 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) FtsX PF02687.16 gi|386002104|ref|YP_005920403.1| - 0.89 9.3 5.4 2.2 8.0 3.8 1.6 1 1 0 1 1 1 0 FtsX-like permease family Oxidored_q2 PF00420.19 gi|386002105|ref|YP_005920404.1| - 2e-24 85.0 6.6 2.2e-24 84.8 4.6 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q1 PF00361.15 gi|386002106|ref|YP_005920405.1| - 6.7e-80 268.2 18.7 6.7e-80 268.2 13.0 2.2 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|386002106|ref|YP_005920405.1| - 3.1e-12 45.8 0.2 3.1e-12 45.8 0.1 2.8 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|386002106|ref|YP_005920405.1| - 5.2e-06 26.1 0.1 2.2e-05 24.1 0.1 1.9 1 1 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Oxidored_q1 PF00361.15 gi|386002107|ref|YP_005920406.1| - 1.2e-70 237.8 25.2 1.2e-70 237.8 17.5 2.4 4 0 0 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|386002107|ref|YP_005920406.1| - 0.063 12.8 3.8 0.17 11.4 0.1 2.9 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|386002108|ref|YP_005920407.1| - 2.5e-55 187.6 18.3 2.5e-55 187.6 12.7 2.5 1 1 1 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Sulf_transp PF04143.9 gi|386002109|ref|YP_005920408.1| - 0.00043 20.2 17.0 0.00043 20.2 11.8 3.1 2 1 1 3 3 3 1 Sulphur transport Sulf_transp PF04143.9 gi|386002110|ref|YP_005920409.1| - 2.3e-12 46.7 13.9 2.3e-12 46.7 9.6 3.1 4 0 0 4 4 4 1 Sulphur transport DUF4341 PF14241.1 gi|386002110|ref|YP_005920409.1| - 0.00011 21.7 0.3 0.00011 21.7 0.2 2.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4341) DctQ PF04290.7 gi|386002110|ref|YP_005920409.1| - 1.4 8.7 8.8 1.5 8.5 5.1 1.7 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component SAM_adeno_trans PF01887.11 gi|386002111|ref|YP_005920410.1| - 4.8e-72 242.1 0.0 5.7e-72 241.8 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Chitin_bind_4 PF00379.18 gi|386002111|ref|YP_005920410.1| - 0.046 13.9 0.0 0.15 12.3 0.0 1.8 1 0 0 1 1 1 0 Insect cuticle protein Acetyltransf_2 PF00797.12 gi|386002111|ref|YP_005920410.1| - 0.2 11.1 0.0 0.38 10.2 0.0 1.3 1 0 0 1 1 1 0 N-acetyltransferase CitMHS PF03600.11 gi|386002112|ref|YP_005920411.1| - 6e-39 133.6 27.7 1.8e-25 89.2 7.7 2.2 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|386002112|ref|YP_005920411.1| - 1.1e-15 57.0 0.1 5.8e-08 32.2 0.0 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|386002112|ref|YP_005920411.1| - 2.5e-12 46.4 38.9 2.1e-07 30.2 11.2 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region Sm_multidrug_ex PF06695.6 gi|386002113|ref|YP_005920412.1| - 2.3e-38 131.0 0.9 3.1e-38 130.6 0.6 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein LTD PF00932.14 gi|386002115|ref|YP_005920414.1| - 6.1e-09 35.9 0.1 8.6e-09 35.4 0.0 1.3 1 1 0 1 1 1 1 Lamin Tail Domain CBM_20 PF00686.14 gi|386002115|ref|YP_005920414.1| - 0.0085 15.6 0.1 0.079 12.5 0.0 2.1 1 1 1 2 2 2 1 Starch binding domain LTD PF00932.14 gi|386002116|ref|YP_005920415.1| - 5e-08 33.0 0.4 1.1e-07 31.8 0.3 1.5 1 1 0 1 1 1 1 Lamin Tail Domain LTD PF00932.14 gi|386002117|ref|YP_005920416.1| - 3.1e-10 40.1 0.3 5.7e-10 39.3 0.2 1.4 1 0 0 1 1 1 1 Lamin Tail Domain DUF296 PF03479.10 gi|386002118|ref|YP_005920417.1| - 9.9e-14 50.9 0.1 1.2e-13 50.7 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF296) Radical_SAM_N PF08497.5 gi|386002119|ref|YP_005920418.1| - 4.7e-124 413.2 0.0 6e-124 412.8 0.0 1.1 1 0 0 1 1 1 1 Radical SAM N-terminal Radical_SAM PF04055.16 gi|386002119|ref|YP_005920418.1| - 9.3e-20 71.4 0.1 4.7e-19 69.1 0.1 2.1 3 0 0 3 3 3 1 Radical SAM superfamily DUF3362 PF11842.3 gi|386002119|ref|YP_005920418.1| - 3.2e-13 49.8 0.0 4.9e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) B12-binding PF02310.14 gi|386002119|ref|YP_005920418.1| - 0.011 15.5 0.1 4.8 7.0 0.0 3.0 2 1 0 2 2 2 0 B12 binding domain Met_10 PF02475.11 gi|386002120|ref|YP_005920419.1| - 9e-59 198.4 0.1 1.2e-58 198.0 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|386002120|ref|YP_005920419.1| - 4.2e-11 43.4 0.3 1.6e-10 41.5 0.1 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386002120|ref|YP_005920419.1| - 9.5e-11 41.7 1.9 1.3e-10 41.2 0.5 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|386002120|ref|YP_005920419.1| - 9.1e-10 38.1 0.0 8.5e-09 35.0 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|386002120|ref|YP_005920419.1| - 3.5e-08 33.1 0.0 7e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|386002120|ref|YP_005920419.1| - 2.2e-06 27.1 0.1 4.1e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|386002120|ref|YP_005920419.1| - 7.5e-06 25.2 0.2 1.2e-05 24.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|386002120|ref|YP_005920419.1| - 0.00016 21.2 0.0 0.00024 20.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.11 gi|386002120|ref|YP_005920419.1| - 0.00027 19.9 0.3 0.00045 19.2 0.2 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_11 PF08241.7 gi|386002120|ref|YP_005920419.1| - 0.00028 21.3 0.1 0.00057 20.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|386002120|ref|YP_005920419.1| - 0.00028 20.5 0.0 0.00046 19.7 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_24 PF13578.1 gi|386002120|ref|YP_005920419.1| - 0.0008 20.2 1.1 0.0053 17.5 0.1 2.3 1 1 1 2 2 2 1 Methyltransferase domain ADH_zinc_N PF00107.21 gi|386002120|ref|YP_005920419.1| - 0.0019 17.7 0.4 0.0061 16.1 0.1 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Methyltrans_SAM PF10672.4 gi|386002120|ref|YP_005920419.1| - 0.011 14.6 0.0 0.017 14.0 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase TehB PF03848.9 gi|386002120|ref|YP_005920419.1| - 0.028 13.5 0.0 0.04 13.0 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_25 PF13649.1 gi|386002120|ref|YP_005920419.1| - 0.031 14.6 0.0 0.099 13.0 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386002120|ref|YP_005920419.1| - 0.034 13.8 0.0 0.08 12.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|386002120|ref|YP_005920419.1| - 0.055 13.4 0.5 0.18 11.8 0.1 1.9 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_2 PF03446.10 gi|386002120|ref|YP_005920419.1| - 0.055 13.3 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase tRNA_U5-meth_tr PF05958.6 gi|386002120|ref|YP_005920419.1| - 0.09 11.4 0.1 0.13 10.9 0.1 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.12 gi|386002120|ref|YP_005920419.1| - 0.14 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase VWA_2 PF13519.1 gi|386002121|ref|YP_005920420.1| - 1.3e-21 77.5 0.0 2.3e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|386002121|ref|YP_005920420.1| - 4.4e-10 39.5 0.0 6.1e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|386002121|ref|YP_005920420.1| - 8.6e-07 28.3 0.7 1.5e-06 27.5 0.5 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein ADH_zinc_N_2 PF13602.1 gi|386002121|ref|YP_005920420.1| - 0.021 15.7 0.7 0.65 10.9 0.1 2.5 2 0 0 2 2 2 0 Zinc-binding dehydrogenase VWA_3 PF13768.1 gi|386002121|ref|YP_005920420.1| - 0.06 13.0 0.1 0.12 12.0 0.0 1.6 1 1 0 1 1 1 0 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|386002122|ref|YP_005920421.1| - 1e-12 47.6 2.0 2.1e-08 33.5 0.0 3.2 3 1 1 4 4 4 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|386002122|ref|YP_005920421.1| - 1.7e-09 37.5 0.1 8.8e-06 25.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|386002122|ref|YP_005920421.1| - 3.5e-05 22.7 2.8 0.00025 19.9 0.0 2.9 3 1 0 3 3 3 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|386002122|ref|YP_005920421.1| - 5.5e-05 22.7 0.6 0.024 14.1 0.0 3.0 3 0 0 3 3 3 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|386002122|ref|YP_005920421.1| - 0.043 13.4 0.0 1.5 8.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|386002122|ref|YP_005920421.1| - 0.078 12.9 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain ABA_GPCR PF12430.3 gi|386002123|ref|YP_005920422.1| - 0.74 8.9 7.1 1.2 8.2 4.9 1.3 1 0 0 1 1 1 0 Abscisic acid G-protein coupled receptor TraL PF07178.6 gi|386002123|ref|YP_005920422.1| - 1.3 9.0 4.2 1.1 9.3 0.1 2.2 1 1 1 2 2 2 0 TraL protein Tetraspannin PF00335.15 gi|386002123|ref|YP_005920422.1| - 3.3 6.9 9.4 5 6.3 6.5 1.3 1 1 0 1 1 1 0 Tetraspanin family AAA PF00004.24 gi|386002124|ref|YP_005920423.1| - 2.1e-97 322.4 0.0 1.9e-47 160.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|386002124|ref|YP_005920423.1| - 8e-29 99.4 0.1 6.3e-28 96.5 0.1 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|386002124|ref|YP_005920423.1| - 1.4e-14 54.4 0.0 7.8e-06 25.9 0.0 2.7 2 0 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|386002124|ref|YP_005920423.1| - 3.6e-14 52.1 0.0 5.3e-13 48.3 0.0 2.7 2 1 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.9 gi|386002124|ref|YP_005920423.1| - 4.4e-14 52.3 0.2 1.2e-05 25.0 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|386002124|ref|YP_005920423.1| - 2.7e-13 50.1 0.1 0.00021 21.4 0.0 3.7 2 2 0 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|386002124|ref|YP_005920423.1| - 6.1e-13 48.3 0.0 2.5e-05 23.4 0.0 3.1 3 1 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|386002124|ref|YP_005920423.1| - 2.2e-12 47.8 0.7 0.00011 22.9 0.0 3.6 3 2 1 4 4 2 2 AAA domain AAA_2 PF07724.9 gi|386002124|ref|YP_005920423.1| - 1.2e-11 44.8 0.0 6e-05 23.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|386002124|ref|YP_005920423.1| - 8.9e-11 41.1 0.0 0.00032 19.5 0.0 3.2 4 0 0 4 4 4 2 TIP49 C-terminus AAA_14 PF13173.1 gi|386002124|ref|YP_005920423.1| - 2.4e-09 37.1 0.0 0.0015 18.3 0.0 2.6 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|386002124|ref|YP_005920423.1| - 2.5e-09 37.1 0.0 0.001 18.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|386002124|ref|YP_005920423.1| - 3.3e-09 36.3 0.4 0.0017 18.0 0.0 3.2 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|386002124|ref|YP_005920423.1| - 6e-09 35.2 0.0 0.0013 17.8 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|386002124|ref|YP_005920423.1| - 1.5e-08 35.0 0.0 0.0057 16.9 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|386002124|ref|YP_005920423.1| - 1.4e-07 31.6 0.0 0.0025 17.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|386002124|ref|YP_005920423.1| - 2.5e-07 30.2 0.3 0.015 14.7 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.1 gi|386002124|ref|YP_005920423.1| - 1.4e-06 27.8 4.1 0.059 12.7 0.1 4.2 2 2 1 3 3 3 2 AAA domain Mg_chelatase PF01078.16 gi|386002124|ref|YP_005920423.1| - 2.8e-06 26.6 0.0 0.072 12.2 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|386002124|ref|YP_005920423.1| - 3.1e-06 26.8 0.0 0.049 13.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|386002124|ref|YP_005920423.1| - 5.1e-06 26.6 0.0 0.14 12.3 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.21 gi|386002124|ref|YP_005920423.1| - 5.1e-06 26.0 0.0 0.15 11.5 0.0 3.0 2 1 0 2 2 2 2 Sigma-54 interaction domain DUF2075 PF09848.4 gi|386002124|ref|YP_005920423.1| - 6.4e-06 25.3 0.0 0.018 14.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|386002124|ref|YP_005920423.1| - 6.4e-06 26.4 0.0 0.048 13.9 0.0 2.5 2 0 0 2 2 2 2 ABC transporter KaiC PF06745.8 gi|386002124|ref|YP_005920423.1| - 1.3e-05 24.4 0.4 0.43 9.6 0.0 3.3 2 1 1 3 3 3 2 KaiC Cytidylate_kin2 PF13189.1 gi|386002124|ref|YP_005920423.1| - 1.3e-05 25.1 0.1 0.029 14.2 0.0 2.9 3 0 0 3 3 3 1 Cytidylate kinase-like family Sigma54_activ_2 PF14532.1 gi|386002124|ref|YP_005920423.1| - 1.7e-05 24.8 0.0 0.28 11.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain SKI PF01202.17 gi|386002124|ref|YP_005920423.1| - 6.3e-05 22.8 0.0 0.27 11.1 0.0 2.8 2 0 0 2 2 2 2 Shikimate kinase Arch_ATPase PF01637.13 gi|386002124|ref|YP_005920423.1| - 7e-05 22.6 0.0 0.61 9.7 0.0 3.5 2 1 1 3 3 3 1 Archaeal ATPase DUF815 PF05673.8 gi|386002124|ref|YP_005920423.1| - 8.1e-05 21.6 0.0 0.095 11.6 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.7 gi|386002124|ref|YP_005920423.1| - 0.00013 21.6 0.1 2.1 7.9 0.0 3.7 3 1 1 4 4 4 2 NACHT domain PhoH PF02562.11 gi|386002124|ref|YP_005920423.1| - 0.00015 21.0 0.1 0.55 9.4 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.12 gi|386002124|ref|YP_005920423.1| - 0.00024 20.0 0.0 0.42 9.4 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|386002124|ref|YP_005920423.1| - 0.00029 19.8 0.0 0.45 9.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain ResIII PF04851.10 gi|386002124|ref|YP_005920423.1| - 0.00045 20.0 0.0 0.55 10.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_11 PF13086.1 gi|386002124|ref|YP_005920423.1| - 0.00068 19.2 0.0 0.56 9.7 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|386002124|ref|YP_005920423.1| - 0.00093 18.8 0.3 1.6 8.2 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_24 PF13479.1 gi|386002124|ref|YP_005920423.1| - 0.00096 18.7 0.0 0.22 11.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain CPT PF07931.7 gi|386002124|ref|YP_005920423.1| - 0.0011 18.6 0.0 0.31 10.6 0.0 2.5 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein NTPase_1 PF03266.10 gi|386002124|ref|YP_005920423.1| - 0.0013 18.5 0.2 1.1 8.8 0.0 3.3 2 1 1 3 3 3 1 NTPase ATP-synt_ab PF00006.20 gi|386002124|ref|YP_005920423.1| - 0.0018 17.7 0.0 2 7.8 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain UPF0079 PF02367.12 gi|386002124|ref|YP_005920423.1| - 0.0038 16.8 0.0 2.2 7.9 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|386002124|ref|YP_005920423.1| - 0.0067 16.1 0.2 14 5.2 0.0 3.5 2 2 0 3 3 3 0 Bacterial dnaA protein IPT PF01745.11 gi|386002124|ref|YP_005920423.1| - 0.0074 15.4 0.3 0.38 9.8 0.0 2.7 3 0 0 3 3 2 1 Isopentenyl transferase Torsin PF06309.6 gi|386002124|ref|YP_005920423.1| - 0.01 15.7 0.0 0.8 9.6 0.0 2.4 2 0 0 2 2 2 0 Torsin KTI12 PF08433.5 gi|386002124|ref|YP_005920423.1| - 0.011 14.9 0.0 2.2 7.4 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 KAP_NTPase PF07693.9 gi|386002124|ref|YP_005920423.1| - 0.018 14.0 0.0 2.3 7.1 0.0 3.4 3 1 1 4 4 4 0 KAP family P-loop domain Viral_helicase1 PF01443.13 gi|386002124|ref|YP_005920423.1| - 0.024 14.1 0.0 4.2 6.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF234 PF03008.9 gi|386002124|ref|YP_005920423.1| - 0.037 14.1 0.3 3.4 7.8 0.2 2.8 1 1 1 2 2 2 0 Archaea bacterial proteins of unknown function DEAD PF00270.24 gi|386002124|ref|YP_005920423.1| - 0.11 11.9 0.3 85 2.5 0.0 3.6 2 2 1 4 4 4 0 DEAD/DEAH box helicase Guanylate_kin PF00625.16 gi|386002124|ref|YP_005920423.1| - 0.13 11.7 1.4 51 3.2 0.0 4.1 3 2 2 5 5 4 0 Guanylate kinase Vps4_C PF09336.5 gi|386002124|ref|YP_005920423.1| - 0.17 11.8 0.0 16 5.4 0.0 2.6 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain TrwB_AAD_bind PF10412.4 gi|386002124|ref|YP_005920423.1| - 0.19 10.3 0.0 4 5.9 0.0 2.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain PRC PF05239.11 gi|386002125|ref|YP_005920424.1| - 1.1e-13 50.8 0.0 1.1e-13 50.7 0.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain Pro_isomerase PF00160.16 gi|386002126|ref|YP_005920425.1| - 1.1e-46 158.8 0.1 1.4e-46 158.5 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD STT3 PF02516.9 gi|386002127|ref|YP_005920426.1| - 1.5e-28 100.0 27.3 3.3e-28 98.8 18.9 1.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|386002127|ref|YP_005920426.1| - 1.6e-10 41.0 13.9 1.6e-10 41.0 9.7 3.1 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase FAA_hydrolase PF01557.13 gi|386002129|ref|YP_005920428.1| - 3e-67 226.2 0.0 3.7e-67 225.9 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DHODB_Fe-S_bind PF10418.4 gi|386002130|ref|YP_005920429.1| - 3.1e-12 45.7 1.8 3.1e-12 45.7 1.3 2.6 3 0 0 3 3 3 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|386002130|ref|YP_005920429.1| - 2.6e-09 37.6 0.0 3.8e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|386002130|ref|YP_005920429.1| - 0.00017 21.6 0.0 0.00052 20.0 0.0 1.8 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain Prokineticin PF06607.6 gi|386002130|ref|YP_005920429.1| - 0.076 13.1 0.7 0.16 12.1 0.5 1.5 1 0 0 1 1 1 0 Prokineticin Fer2_3 PF13085.1 gi|386002130|ref|YP_005920429.1| - 0.091 12.5 0.6 0.2 11.4 0.4 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHO_dh PF01180.16 gi|386002131|ref|YP_005920430.1| - 1.9e-56 191.1 0.3 2.2e-56 190.9 0.2 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|386002131|ref|YP_005920430.1| - 5.6e-08 32.3 5.5 9.6e-08 31.5 3.8 1.4 1 1 0 1 1 1 1 Nitronate monooxygenase Dus PF01207.12 gi|386002131|ref|YP_005920430.1| - 2.7e-06 26.4 2.3 0.0048 15.7 0.2 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|386002131|ref|YP_005920430.1| - 0.00097 18.4 0.4 0.0027 17.0 0.1 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein TMP-TENI PF02581.12 gi|386002131|ref|YP_005920430.1| - 0.021 13.9 0.3 0.04 13.0 0.2 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|386002131|ref|YP_005920430.1| - 0.024 13.5 2.1 0.044 12.6 1.5 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PcrB PF01884.12 gi|386002131|ref|YP_005920430.1| - 0.16 11.2 1.1 0.23 10.6 0.1 1.7 2 0 0 2 2 2 0 PcrB family NanE PF04131.9 gi|386002131|ref|YP_005920430.1| - 0.21 10.5 2.3 0.27 10.1 0.3 2.0 2 1 1 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.7 gi|386002131|ref|YP_005920430.1| - 0.22 10.4 1.8 0.16 10.8 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF561) ThiG PF05690.9 gi|386002131|ref|YP_005920430.1| - 0.31 10.0 5.0 0.36 9.8 1.8 2.1 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DUF4573 PF15140.1 gi|386002132|ref|YP_005920431.1| - 7.4e-05 22.4 0.7 0.00031 20.3 0.2 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4573) DEAD PF00270.24 gi|386002133|ref|YP_005920432.1| - 2e-45 154.3 0.0 1.8e-44 151.1 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|386002133|ref|YP_005920432.1| - 1.5e-28 98.4 0.2 2.9e-28 97.5 0.2 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_19 PF13245.1 gi|386002133|ref|YP_005920432.1| - 5.8e-05 22.7 1.7 0.046 13.4 0.1 3.0 2 0 0 2 2 2 2 Part of AAA domain ResIII PF04851.10 gi|386002133|ref|YP_005920432.1| - 0.00015 21.6 0.0 0.00025 20.9 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|386002133|ref|YP_005920432.1| - 0.0007 19.2 1.2 0.016 14.8 0.0 3.0 3 1 0 3 3 3 1 AAA domain DUF1253 PF06862.7 gi|386002133|ref|YP_005920432.1| - 0.016 13.6 0.0 0.052 11.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1253) Flavi_DEAD PF07652.9 gi|386002133|ref|YP_005920432.1| - 0.1 12.3 0.0 0.29 10.8 0.0 1.8 1 1 0 1 1 1 0 Flavivirus DEAD domain DUF204 PF02659.10 gi|386002135|ref|YP_005920434.1| - 0.0097 16.0 3.6 0.0097 16.0 2.5 2.4 1 1 1 2 2 2 1 Domain of unknown function DUF DsbD PF02683.10 gi|386002135|ref|YP_005920434.1| - 0.03 13.9 5.5 0.037 13.6 3.5 1.3 1 1 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region YwiC PF14256.1 gi|386002135|ref|YP_005920434.1| - 0.89 9.6 8.3 0.22 11.6 3.4 1.7 1 1 1 2 2 2 0 YwiC-like protein Glutaredoxin PF00462.19 gi|386002136|ref|YP_005920435.1| - 0.00059 19.7 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin OpgC_C PF10129.4 gi|386002136|ref|YP_005920435.1| - 0.026 13.2 3.0 0.037 12.6 2.1 1.2 1 0 0 1 1 1 0 OpgC protein Thioredoxin_4 PF13462.1 gi|386002136|ref|YP_005920435.1| - 0.11 12.5 0.0 4.4 7.2 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin PRA1 PF03208.14 gi|386002136|ref|YP_005920435.1| - 2.4 7.4 6.3 4.5 6.5 4.4 1.4 1 0 0 1 1 1 0 PRA1 family protein HTH_24 PF13412.1 gi|386002137|ref|YP_005920436.1| - 0.0029 16.9 0.0 0.0079 15.5 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RPA_C PF08784.6 gi|386002137|ref|YP_005920436.1| - 0.0034 17.7 0.2 0.072 13.5 0.0 2.3 2 1 0 2 2 2 1 Replication protein A C terminal YjcQ PF09639.5 gi|386002137|ref|YP_005920436.1| - 0.014 15.4 0.1 0.33 11.0 0.0 2.2 2 0 0 2 2 2 0 YjcQ protein UPF0147 PF03685.8 gi|386002137|ref|YP_005920436.1| - 0.028 14.3 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0147) DDR PF08841.5 gi|386002137|ref|YP_005920436.1| - 0.056 12.2 0.0 0.065 12.0 0.0 1.1 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain TrmB PF01978.14 gi|386002137|ref|YP_005920436.1| - 0.079 12.6 0.0 0.4 10.4 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB EF-hand_8 PF13833.1 gi|386002139|ref|YP_005920438.1| - 0.0095 15.5 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 1 EF-hand domain pair Amidohydro_1 PF01979.15 gi|386002140|ref|YP_005920439.1| - 2.3e-50 172.1 0.0 2.7e-50 171.8 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|386002140|ref|YP_005920439.1| - 6.8e-08 32.8 1.9 3.2e-05 24.1 0.4 3.3 3 1 0 3 3 3 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|386002140|ref|YP_005920439.1| - 1.2e-07 31.4 0.0 3.6e-07 29.9 0.0 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|386002140|ref|YP_005920439.1| - 0.0003 20.1 1.3 0.0015 17.8 0.1 2.2 1 1 0 2 2 2 1 Amidohydrolase family TatD_DNase PF01026.16 gi|386002140|ref|YP_005920439.1| - 0.018 14.2 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase NPCBM_assoc PF10633.4 gi|386002141|ref|YP_005920440.1| - 0.00012 22.0 0.0 0.0062 16.5 0.0 2.8 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DeoC PF01791.4 gi|386002142|ref|YP_005920441.1| - 6.2e-53 179.5 0.1 7.4e-53 179.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|386002142|ref|YP_005920441.1| - 0.041 13.2 0.1 0.075 12.4 0.0 1.6 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family AP_endonuc_2 PF01261.19 gi|386002142|ref|YP_005920441.1| - 0.046 13.0 0.4 0.9 8.7 0.0 2.1 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel PEP_mutase PF13714.1 gi|386002142|ref|YP_005920441.1| - 0.1 11.7 2.1 0.23 10.6 0.2 2.4 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase Rhodanese PF00581.15 gi|386002143|ref|YP_005920442.1| - 3.4e-21 75.6 0.0 1.8e-14 54.0 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain Golgin_A5 PF09787.4 gi|386002143|ref|YP_005920442.1| - 0.0075 14.8 0.1 0.011 14.3 0.1 1.1 1 0 0 1 1 1 1 Golgin subfamily A member 5 HTH_29 PF13551.1 gi|386002144|ref|YP_005920443.1| - 1.9e-16 60.1 0.2 2.4e-16 59.8 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|386002144|ref|YP_005920443.1| - 7.7e-10 38.5 1.4 1.5e-09 37.6 0.7 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|386002144|ref|YP_005920443.1| - 2.2e-08 33.4 0.5 4.6e-08 32.4 0.3 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_32 PF13565.1 gi|386002144|ref|YP_005920443.1| - 1e-07 32.6 0.4 2.1e-07 31.6 0.3 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.1 gi|386002144|ref|YP_005920443.1| - 0.0002 20.8 0.3 0.00099 18.6 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn helix LZ_Tnp_IS481 PF13011.1 gi|386002144|ref|YP_005920443.1| - 0.00083 19.6 0.4 0.0014 18.8 0.3 1.5 1 1 0 1 1 1 1 leucine-zipper of insertion element IS481 Acetyltransf_1 PF00583.19 gi|386002146|ref|YP_005920445.1| - 5.8e-08 32.6 0.0 7.9e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|386002146|ref|YP_005920445.1| - 0.0077 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386002146|ref|YP_005920445.1| - 0.016 14.9 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Aminotran_3 PF00202.16 gi|386002147|ref|YP_005920446.1| - 2.9e-76 256.5 0.0 3.8e-76 256.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|386002147|ref|YP_005920446.1| - 0.021 13.7 0.0 0.042 12.7 0.0 1.5 1 0 0 1 1 1 0 Aminotransferase class I and II Ectoine_synth PF06339.7 gi|386002148|ref|YP_005920447.1| - 4e-55 185.1 0.0 1.2e-30 106.1 0.0 2.0 2 0 0 2 2 2 2 Ectoine synthase Cupin_1 PF00190.17 gi|386002148|ref|YP_005920447.1| - 0.0012 18.2 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_2 PF07883.6 gi|386002148|ref|YP_005920447.1| - 0.0026 17.2 0.4 0.8 9.2 0.2 2.3 2 0 0 2 2 2 2 Cupin domain Cupin_2 PF07883.6 gi|386002149|ref|YP_005920448.1| - 2.2e-12 46.2 0.1 2.8e-12 45.9 0.1 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|386002149|ref|YP_005920448.1| - 0.0013 18.3 0.1 0.0017 18.0 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|386002149|ref|YP_005920448.1| - 0.0052 16.1 0.0 0.0062 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.3 gi|386002149|ref|YP_005920448.1| - 0.034 14.1 0.0 0.042 13.8 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Cupin_1 PF00190.17 gi|386002149|ref|YP_005920448.1| - 0.13 11.6 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Cupin UCR_Fe-S_N PF10399.4 gi|386002150|ref|YP_005920449.1| - 9.9 5.4 9.3 3.5 6.8 2.8 2.6 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Phosphodiest PF01663.17 gi|386002152|ref|YP_005920451.1| - 1.3e-13 51.0 0.0 8.9e-07 28.5 0.0 2.1 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|386002152|ref|YP_005920451.1| - 1e-09 38.0 0.0 4.9e-09 35.8 0.0 2.1 3 0 0 3 3 3 1 Sulfatase Metalloenzyme PF01676.13 gi|386002152|ref|YP_005920451.1| - 1.6e-07 31.0 0.0 1.7e-06 27.6 0.0 2.4 2 1 0 2 2 2 1 Metalloenzyme superfamily DUF362 PF04015.7 gi|386002153|ref|YP_005920452.1| - 7.8e-28 97.3 0.0 2.9e-27 95.4 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_9 PF13187.1 gi|386002153|ref|YP_005920452.1| - 8e-07 29.2 4.9 0.0092 16.2 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386002153|ref|YP_005920452.1| - 1.5e-06 27.7 14.8 0.0002 21.0 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|386002153|ref|YP_005920452.1| - 3.6e-06 26.3 16.2 0.0051 16.3 1.8 2.9 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386002153|ref|YP_005920452.1| - 3.9e-06 27.1 9.9 1.4e-05 25.3 7.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002153|ref|YP_005920452.1| - 2.2e-05 24.3 2.2 0.08 12.9 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386002153|ref|YP_005920452.1| - 6.7e-05 23.5 5.1 0.029 15.0 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|386002153|ref|YP_005920452.1| - 0.00023 21.4 4.5 0.17 12.2 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386002153|ref|YP_005920452.1| - 0.00033 20.4 9.0 0.002 17.9 6.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386002153|ref|YP_005920452.1| - 0.00043 20.0 11.1 0.0091 15.7 8.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002153|ref|YP_005920452.1| - 0.0025 17.5 12.8 0.081 12.8 2.6 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386002153|ref|YP_005920452.1| - 0.0068 16.9 12.5 0.21 12.1 1.7 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|386002153|ref|YP_005920452.1| - 0.032 14.5 12.5 1 9.8 1.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF2088 PF09861.4 gi|386002153|ref|YP_005920452.1| - 0.14 11.1 0.3 0.21 10.5 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) Fer4_18 PF13746.1 gi|386002153|ref|YP_005920452.1| - 0.32 11.4 11.8 0.36 11.3 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386002153|ref|YP_005920452.1| - 1 10.0 16.4 5.7 7.7 2.5 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|386002153|ref|YP_005920452.1| - 6.5 7.2 12.5 8.7 6.8 1.6 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain ATP-grasp_5 PF13549.1 gi|386002154|ref|YP_005920453.1| - 7e-75 251.0 0.1 1.2e-74 250.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|386002154|ref|YP_005920453.1| - 4.1e-45 152.7 0.7 9e-45 151.6 0.5 1.6 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|386002154|ref|YP_005920453.1| - 6.1e-22 77.9 0.0 2e-21 76.3 0.0 2.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|386002154|ref|YP_005920453.1| - 4.7e-12 46.2 0.1 2.1e-11 44.1 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|386002154|ref|YP_005920453.1| - 0.017 14.4 0.4 0.03 13.7 0.3 1.4 1 0 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|386002154|ref|YP_005920453.1| - 0.065 12.5 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF11 PF01345.13 gi|386002157|ref|YP_005920456.1| - 5.4e-123 401.2 240.7 1.4e-09 37.8 2.6 31.0 31 0 0 31 31 31 28 Domain of unknown function DUF11 CARDB PF07705.6 gi|386002157|ref|YP_005920456.1| - 8e-13 48.3 86.9 0.64 10.1 0.2 22.8 23 1 1 24 24 24 11 CARDB Mannosyl_trans3 PF11051.3 gi|386002157|ref|YP_005920456.1| - 0.65 9.2 0.2 1e+02 2.0 0.0 4.0 5 0 0 5 5 5 0 Mannosyltransferase putative MTD PF01993.13 gi|386002158|ref|YP_005920457.1| - 2.6e-84 282.5 0.1 2.9e-84 282.3 0.1 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF126 PF01989.11 gi|386002159|ref|YP_005920458.1| - 8.7e-35 118.2 1.9 1e-34 118.0 0.3 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF126 PEP-utilizers PF00391.18 gi|386002159|ref|YP_005920458.1| - 0.02 14.4 0.3 0.037 13.5 0.2 1.5 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain DUF521 PF04412.8 gi|386002160|ref|YP_005920459.1| - 3.9e-142 473.5 0.0 4.4e-142 473.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) MtrH PF02007.13 gi|386002161|ref|YP_005920460.1| - 2.2e-104 348.6 0.0 2.5e-104 348.4 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit UvrC_HhH_N PF08459.6 gi|386002162|ref|YP_005920461.1| - 6.7e-50 168.6 0.0 1.3e-49 167.7 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.19 gi|386002162|ref|YP_005920461.1| - 5.4e-09 36.2 0.0 1.4e-08 34.9 0.0 1.8 1 0 0 1 1 1 1 GIY-YIG catalytic domain UVR PF02151.14 gi|386002162|ref|YP_005920461.1| - 7.2e-09 34.8 5.0 1.4e-08 33.9 3.5 1.5 1 0 0 1 1 1 1 UvrB/uvrC motif UPF0150 PF03681.10 gi|386002164|ref|YP_005920463.1| - 2.8e-15 55.6 0.1 3.5e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Antitoxin-MazE PF04014.13 gi|386002165|ref|YP_005920464.1| - 5.7e-09 35.5 0.3 9.4e-09 34.8 0.2 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|386002165|ref|YP_005920464.1| - 0.002 17.8 0.2 0.0043 16.7 0.0 1.6 2 0 0 2 2 2 1 MraZ protein DUF3194 PF11419.3 gi|386002165|ref|YP_005920464.1| - 0.021 14.9 0.6 0.032 14.4 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3194) EnY2 PF10163.4 gi|386002165|ref|YP_005920464.1| - 0.044 13.7 0.6 0.47 10.4 0.4 2.0 2 0 0 2 2 2 0 Transcription factor e(y)2 Ribosomal_L1 PF00687.16 gi|386002165|ref|YP_005920464.1| - 0.06 12.6 0.4 0.067 12.5 0.3 1.0 1 0 0 1 1 1 0 Ribosomal protein L1p/L10e family AbrB-like PF14250.1 gi|386002165|ref|YP_005920464.1| - 0.075 12.9 0.0 0.2 11.6 0.0 1.6 2 0 0 2 2 2 0 AbrB-like transcriptional regulator PIN PF01850.16 gi|386002166|ref|YP_005920465.1| - 1.2e-11 45.0 0.6 1.7e-11 44.4 0.4 1.3 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|386002166|ref|YP_005920465.1| - 6.4e-08 33.2 0.1 9.2e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|386002167|ref|YP_005920466.1| - 9.3e-18 64.7 0.1 1.1e-17 64.5 0.1 1.0 1 0 0 1 1 1 1 PIN domain PRK PF00485.13 gi|386002167|ref|YP_005920466.1| - 0.099 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Flavodoxin_2 PF02525.12 gi|386002168|ref|YP_005920467.1| - 3.5e-36 124.6 0.0 4e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|386002168|ref|YP_005920467.1| - 1.1e-16 60.6 0.0 1.5e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|386002168|ref|YP_005920467.1| - 0.00042 19.7 0.0 0.00061 19.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin HEAT_2 PF13646.1 gi|386002169|ref|YP_005920468.1| - 1.3e-25 89.4 12.4 1.5e-10 41.1 0.2 2.4 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.11 gi|386002169|ref|YP_005920468.1| - 4e-08 32.9 3.5 0.0073 16.6 0.0 4.0 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|386002169|ref|YP_005920468.1| - 3.8e-06 26.5 0.5 4.1 7.7 0.0 4.2 4 0 0 4 4 4 2 HEAT repeat HEAT_EZ PF13513.1 gi|386002169|ref|YP_005920468.1| - 4.4e-06 27.0 3.8 0.021 15.3 0.3 3.6 1 1 2 3 3 3 3 HEAT-like repeat Arm PF00514.18 gi|386002169|ref|YP_005920468.1| - 0.0011 18.7 0.2 5.3 7.0 0.0 3.2 3 0 0 3 3 3 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|386002169|ref|YP_005920468.1| - 0.082 11.2 0.1 3.9 5.6 0.0 2.2 1 1 1 2 2 2 0 Adaptin N terminal region Cnd1 PF12717.2 gi|386002169|ref|YP_005920468.1| - 0.095 12.5 0.0 0.52 10.1 0.0 2.3 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 POR PF01558.13 gi|386002170|ref|YP_005920469.1| - 1.6e-40 138.8 0.3 2e-40 138.4 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|386002171|ref|YP_005920470.1| - 1.5e-23 83.0 0.1 3.7e-23 81.7 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|386002171|ref|YP_005920470.1| - 1.7e-15 57.1 0.4 2.8e-08 33.5 0.2 2.4 2 0 0 2 2 2 2 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_10 PF13237.1 gi|386002171|ref|YP_005920470.1| - 5.7e-07 29.2 8.4 1.5e-06 27.9 5.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386002171|ref|YP_005920470.1| - 9.5e-06 25.2 12.8 0.0091 15.8 1.7 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|386002171|ref|YP_005920470.1| - 1e-05 24.8 18.4 0.0002 20.7 4.3 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|386002171|ref|YP_005920470.1| - 0.00016 21.4 11.3 0.0079 16.0 8.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002171|ref|YP_005920470.1| - 0.001 18.8 4.1 0.001 18.8 2.9 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|386002171|ref|YP_005920470.1| - 0.0015 18.6 17.8 0.0034 17.6 1.9 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386002171|ref|YP_005920470.1| - 0.0036 17.6 13.9 0.0036 17.6 9.6 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain TPP_enzyme_N PF02776.13 gi|386002171|ref|YP_005920470.1| - 0.032 13.7 0.5 0.13 11.7 0.2 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_9 PF13187.1 gi|386002171|ref|YP_005920470.1| - 0.086 13.1 16.3 0.028 14.6 8.9 2.1 2 1 0 2 2 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386002171|ref|YP_005920470.1| - 0.096 13.1 10.0 0.3 11.5 2.0 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002171|ref|YP_005920470.1| - 0.11 12.5 10.3 0.4 10.7 7.1 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386002171|ref|YP_005920470.1| - 0.71 10.6 10.4 0.42 11.3 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|386002171|ref|YP_005920470.1| - 1.9 9.0 15.4 5.5 7.6 3.5 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|386002171|ref|YP_005920470.1| - 6.4 7.2 12.7 11 6.5 3.1 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|386002171|ref|YP_005920470.1| - 7 7.0 12.1 0.56 10.5 1.2 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAL_decarboxy PF03306.8 gi|386002172|ref|YP_005920471.1| - 1.2e-83 279.5 0.0 1.5e-83 279.1 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase HHH_3 PF12836.2 gi|386002173|ref|YP_005920472.1| - 0.0013 18.6 0.1 0.0024 17.8 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Histidinol_dh PF00815.15 gi|386002174|ref|YP_005920473.1| - 1e-171 571.1 6.1 1.3e-171 570.8 4.2 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DNA_ligase_A_M PF01068.16 gi|386002175|ref|YP_005920474.1| - 9e-55 185.1 0.0 1.5e-54 184.4 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|386002175|ref|YP_005920474.1| - 8.9e-43 146.1 0.0 2.1e-39 135.1 0.0 2.4 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|386002175|ref|YP_005920474.1| - 1.5e-17 63.7 0.0 3.8e-17 62.4 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|386002175|ref|YP_005920474.1| - 0.15 11.7 0.0 5.3 6.6 0.0 2.6 3 0 0 3 3 3 0 mRNA capping enzyme, catalytic domain Homoserine_dh PF00742.14 gi|386002176|ref|YP_005920475.1| - 1.3e-34 119.4 0.0 2.2e-34 118.6 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|386002176|ref|YP_005920475.1| - 1.2e-11 45.0 0.0 2e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DXP_reductoisom PF02670.11 gi|386002176|ref|YP_005920475.1| - 0.028 14.9 0.3 0.17 12.4 0.0 2.1 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Saccharop_dh_N PF04455.7 gi|386002177|ref|YP_005920476.1| - 0.12 12.5 0.2 0.27 11.3 0.1 1.7 1 1 1 2 2 2 0 LOR/SDH bifunctional enzyme conserved region NAD_synthase PF02540.12 gi|386002178|ref|YP_005920477.1| - 2.1e-77 259.3 0.0 2.5e-77 259.0 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|386002178|ref|YP_005920477.1| - 4.5e-05 22.1 0.0 0.0049 15.4 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|386002178|ref|YP_005920477.1| - 0.0014 18.2 0.0 0.0022 17.5 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|386002178|ref|YP_005920477.1| - 0.024 13.9 0.0 0.045 13.0 0.0 1.4 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC HTH_38 PF13936.1 gi|386002178|ref|YP_005920477.1| - 0.15 11.6 0.1 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain eRF1_2 PF03464.10 gi|386002179|ref|YP_005920478.1| - 3.1e-17 63.1 0.0 4.9e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|386002179|ref|YP_005920478.1| - 6.7e-07 29.5 0.0 1.6e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 3 Abhydrolase_5 PF12695.2 gi|386002180|ref|YP_005920479.1| - 3e-20 72.4 0.0 4.1e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|386002180|ref|YP_005920479.1| - 3e-11 43.6 0.2 4.2e-10 39.9 0.2 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|386002180|ref|YP_005920479.1| - 6.7e-09 34.6 0.0 2.6e-08 32.7 0.0 1.9 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.16 gi|386002180|ref|YP_005920479.1| - 8.1e-07 28.4 0.0 5.8e-06 25.6 0.0 1.9 1 1 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.13 gi|386002180|ref|YP_005920479.1| - 0.00011 21.5 0.0 0.00034 19.9 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|386002180|ref|YP_005920479.1| - 0.00043 19.9 0.0 0.00071 19.2 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhoPQ_related PF10142.4 gi|386002180|ref|YP_005920479.1| - 0.0011 17.5 0.0 0.016 13.7 0.0 1.9 1 1 1 2 2 2 1 PhoPQ-activated pathogenicity-related protein BAAT_C PF08840.6 gi|386002180|ref|YP_005920479.1| - 0.033 13.9 0.0 0.17 11.5 0.0 1.7 1 1 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal NTP_transf_2 PF01909.18 gi|386002181|ref|YP_005920480.1| - 8.2e-18 64.5 0.6 9.1e-18 64.3 0.4 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|386002181|ref|YP_005920480.1| - 0.032 14.2 0.0 0.043 13.8 0.0 1.3 1 1 0 1 1 1 0 DNA polymerase beta palm DUF86 PF01934.12 gi|386002182|ref|YP_005920481.1| - 4.6e-22 77.8 0.1 5.3e-22 77.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 UbiA PF01040.13 gi|386002183|ref|YP_005920482.1| - 1.5e-31 109.5 26.0 1.9e-31 109.2 18.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Fig1 PF12351.3 gi|386002183|ref|YP_005920482.1| - 3.1 7.6 8.8 0.14 12.0 1.3 2.0 2 0 0 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 GPI PF06560.6 gi|386002184|ref|YP_005920483.1| - 3.4e-52 176.1 0.0 4.2e-52 175.8 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|386002184|ref|YP_005920483.1| - 0.0003 20.2 0.1 0.0006 19.2 0.1 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|386002184|ref|YP_005920483.1| - 0.033 13.6 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 Cupin DUF3396 PF11876.3 gi|386002185|ref|YP_005920484.1| - 0.1 11.6 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3396) CbiA PF01656.18 gi|386002186|ref|YP_005920485.1| - 1e-28 100.0 0.0 1.3e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|386002186|ref|YP_005920485.1| - 1.9e-09 36.7 18.8 2.3e-05 23.7 3.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386002186|ref|YP_005920485.1| - 3.4e-09 36.9 9.0 0.00036 20.8 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002186|ref|YP_005920485.1| - 1.1e-08 34.5 18.9 0.00012 21.7 4.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|386002186|ref|YP_005920485.1| - 6.3e-08 32.0 19.1 7.2e-05 22.4 2.0 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain AAA_25 PF13481.1 gi|386002186|ref|YP_005920485.1| - 1.4e-05 24.5 0.3 0.0044 16.4 0.1 2.3 2 0 0 2 2 2 1 AAA domain Fer4_10 PF13237.1 gi|386002186|ref|YP_005920485.1| - 3.9e-05 23.3 17.3 0.0005 19.8 12.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|386002186|ref|YP_005920485.1| - 5.6e-05 22.8 0.5 0.012 15.4 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain Fer4_21 PF14697.1 gi|386002186|ref|YP_005920485.1| - 0.00019 21.2 16.2 0.00019 21.2 11.2 2.2 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386002186|ref|YP_005920485.1| - 0.00024 21.3 7.7 0.17 12.2 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002186|ref|YP_005920485.1| - 0.00027 20.8 13.5 0.044 13.8 0.5 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain RuvB_N PF05496.7 gi|386002186|ref|YP_005920485.1| - 0.00098 18.2 0.7 0.043 12.8 0.1 2.4 2 1 1 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus Fer4_15 PF13459.1 gi|386002186|ref|YP_005920485.1| - 0.0012 19.3 9.7 0.024 15.1 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_NifH PF00142.13 gi|386002186|ref|YP_005920485.1| - 0.0014 17.9 0.0 0.19 10.9 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_16 PF13484.1 gi|386002186|ref|YP_005920485.1| - 0.0018 19.0 13.5 0.05 14.3 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain ArsA_ATPase PF02374.10 gi|386002186|ref|YP_005920485.1| - 0.002 17.2 1.9 0.0048 15.9 1.3 1.6 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_9 PF13187.1 gi|386002186|ref|YP_005920485.1| - 0.0083 16.3 18.9 0.13 12.5 13.7 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386002186|ref|YP_005920485.1| - 0.0094 16.2 22.1 0.016 15.4 1.9 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain AAA_17 PF13207.1 gi|386002186|ref|YP_005920485.1| - 0.011 16.5 0.1 0.05 14.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.22 gi|386002186|ref|YP_005920485.1| - 0.012 15.0 0.3 0.68 9.3 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_28 PF13521.1 gi|386002186|ref|YP_005920485.1| - 0.013 15.5 0.2 0.054 13.4 0.2 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|386002186|ref|YP_005920485.1| - 0.013 15.6 0.0 0.41 10.8 0.0 2.5 3 0 0 3 3 2 0 AAA domain SRP54 PF00448.17 gi|386002186|ref|YP_005920485.1| - 0.015 14.7 0.3 0.21 10.9 0.3 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MipZ PF09140.6 gi|386002186|ref|YP_005920485.1| - 0.015 14.3 0.1 0.043 12.9 0.1 1.7 2 0 0 2 2 2 0 ATPase MipZ AAA_16 PF13191.1 gi|386002186|ref|YP_005920485.1| - 0.028 14.4 0.0 0.088 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain FTHFS PF01268.14 gi|386002186|ref|YP_005920485.1| - 0.041 11.8 0.2 0.08 10.9 0.0 1.5 2 0 0 2 2 2 0 Formate--tetrahydrofolate ligase NACHT PF05729.7 gi|386002186|ref|YP_005920485.1| - 0.047 13.3 0.5 0.28 10.8 0.2 2.0 2 0 0 2 2 2 0 NACHT domain T2SE PF00437.15 gi|386002186|ref|YP_005920485.1| - 0.089 11.6 0.2 0.17 10.7 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|386002186|ref|YP_005920485.1| - 0.097 12.2 3.2 0.11 12.0 0.7 2.0 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|386002186|ref|YP_005920485.1| - 0.12 11.9 0.1 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|386002186|ref|YP_005920485.1| - 0.13 11.2 0.1 0.45 9.4 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) MobB PF03205.9 gi|386002186|ref|YP_005920485.1| - 0.13 11.9 0.2 0.65 9.6 0.0 2.1 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|386002186|ref|YP_005920485.1| - 0.18 11.5 0.5 0.9 9.2 0.2 2.1 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.17 gi|386002186|ref|YP_005920485.1| - 0.19 11.9 0.0 0.42 10.8 0.0 1.8 1 1 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|386002186|ref|YP_005920485.1| - 0.27 10.0 2.3 1.1 8.0 0.7 2.1 2 0 0 2 2 2 0 NB-ARC domain PhoH PF02562.11 gi|386002186|ref|YP_005920485.1| - 0.48 9.6 2.4 0.53 9.4 0.9 1.6 2 0 0 2 2 2 0 PhoH-like protein Fer4_18 PF13746.1 gi|386002186|ref|YP_005920485.1| - 0.59 10.5 13.2 2.4 8.6 1.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|386002186|ref|YP_005920485.1| - 0.67 10.3 14.5 1 9.7 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain CbiA PF01656.18 gi|386002187|ref|YP_005920486.1| - 1.4e-24 86.5 0.0 2e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|386002187|ref|YP_005920486.1| - 2.2e-09 36.5 15.7 1.2e-05 24.6 0.9 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|386002187|ref|YP_005920486.1| - 5.8e-08 32.4 4.3 5.8e-08 32.4 3.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386002187|ref|YP_005920486.1| - 6e-08 32.3 7.5 3.4e-07 29.9 5.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386002187|ref|YP_005920486.1| - 1.3e-07 31.8 8.3 2.4e-07 31.0 5.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002187|ref|YP_005920486.1| - 2.1e-07 30.5 14.3 4.4e-05 23.1 1.6 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain ParA PF10609.4 gi|386002187|ref|YP_005920486.1| - 6e-06 26.0 0.0 1.2e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like Fer4_16 PF13484.1 gi|386002187|ref|YP_005920486.1| - 6.8e-06 26.7 2.4 0.024 15.3 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|386002187|ref|YP_005920486.1| - 6.7e-05 23.0 11.9 0.00027 21.1 7.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386002187|ref|YP_005920486.1| - 0.0004 20.1 3.6 0.0004 20.1 2.5 3.0 2 1 1 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|386002187|ref|YP_005920486.1| - 0.00054 20.2 9.0 0.14 12.5 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002187|ref|YP_005920486.1| - 0.00075 19.4 13.8 0.0038 17.2 8.0 2.6 2 1 2 4 4 4 3 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|386002187|ref|YP_005920486.1| - 0.0013 18.3 0.4 1.2 8.9 0.1 2.5 2 0 0 2 2 2 2 Part of AAA domain Fer4_15 PF13459.1 gi|386002187|ref|YP_005920486.1| - 0.0031 18.0 6.1 0.42 11.2 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain AAA_31 PF13614.1 gi|386002187|ref|YP_005920486.1| - 0.02 14.8 0.0 0.22 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Fer4_3 PF12798.2 gi|386002187|ref|YP_005920486.1| - 0.038 14.5 22.3 0.13 12.8 5.1 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|386002187|ref|YP_005920486.1| - 0.041 14.2 11.9 1.2 9.6 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain AAA_25 PF13481.1 gi|386002187|ref|YP_005920486.1| - 0.066 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|386002187|ref|YP_005920486.1| - 0.086 11.8 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Fer4_NifH PF00142.13 gi|386002187|ref|YP_005920486.1| - 0.11 11.5 0.1 9.4 5.3 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA PF00004.24 gi|386002187|ref|YP_005920486.1| - 0.14 12.3 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Fer4_13 PF13370.1 gi|386002187|ref|YP_005920486.1| - 1.9 8.9 11.0 1.2 9.6 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|386002187|ref|YP_005920486.1| - 9.9 6.8 20.3 0.26 11.7 2.9 3.1 4 0 0 4 4 2 0 4Fe-4S binding domain MORN_2 PF07661.8 gi|386002188|ref|YP_005920487.1| - 0.082 12.9 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 MORN repeat variant DUF434 PF04256.7 gi|386002189|ref|YP_005920488.1| - 3.8e-14 51.8 0.2 6.1e-14 51.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF434) UPF0181 PF03701.9 gi|386002189|ref|YP_005920488.1| - 0.016 14.4 0.0 0.032 13.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) Fumerase_C PF05683.7 gi|386002190|ref|YP_005920489.1| - 1.5e-35 122.1 0.0 1.8e-35 121.9 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.9 gi|386002191|ref|YP_005920490.1| - 1e-79 267.4 0.0 1.1e-79 267.3 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) dTMP_synthase PF02593.9 gi|386002192|ref|YP_005920491.1| - 8.2e-66 221.4 0.0 9.3e-66 221.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase CoA_binding_2 PF13380.1 gi|386002192|ref|YP_005920491.1| - 0.078 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain GATase_3 PF07685.9 gi|386002193|ref|YP_005920492.1| - 1.7e-33 115.4 0.0 2.7e-33 114.8 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|386002193|ref|YP_005920492.1| - 8.2e-24 84.0 0.0 1.5e-23 83.2 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|386002193|ref|YP_005920492.1| - 4.9e-16 58.9 0.0 8.3e-09 35.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain Peptidase_S51 PF03575.12 gi|386002193|ref|YP_005920492.1| - 0.0025 17.5 0.0 0.0044 16.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 DUF1611 PF07755.6 gi|386002193|ref|YP_005920492.1| - 0.021 13.4 0.1 0.036 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1611) Fer4_NifH PF00142.13 gi|386002193|ref|YP_005920492.1| - 0.068 12.3 0.0 0.15 11.1 0.0 1.5 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MobB PF03205.9 gi|386002193|ref|YP_005920492.1| - 0.2 11.3 0.2 0.6 9.8 0.0 1.9 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B ResIII PF04851.10 gi|386002194|ref|YP_005920493.1| - 2.3e-22 79.7 0.0 5.8e-22 78.4 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HNH PF01844.18 gi|386002194|ref|YP_005920493.1| - 5.6e-12 45.3 2.3 1.5e-11 44.0 1.6 1.8 1 0 0 1 1 1 1 HNH endonuclease DEAD PF00270.24 gi|386002194|ref|YP_005920493.1| - 1.3e-11 44.2 0.0 2.5e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|386002194|ref|YP_005920493.1| - 2.4e-09 36.9 0.0 5e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|386002194|ref|YP_005920493.1| - 4.6e-06 25.6 0.0 1.4e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 SNF2 family N-terminal domain HNH_4 PF13395.1 gi|386002194|ref|YP_005920493.1| - 0.0016 18.0 0.0 0.0055 16.3 0.0 2.0 1 0 0 1 1 1 1 HNH endonuclease DUF3142 PF11340.3 gi|386002194|ref|YP_005920493.1| - 0.0034 17.0 0.0 0.0061 16.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3142) AAA_16 PF13191.1 gi|386002194|ref|YP_005920493.1| - 0.008 16.1 0.0 0.051 13.5 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain Terminase_6 PF03237.10 gi|386002194|ref|YP_005920493.1| - 0.012 14.3 0.0 0.046 12.4 0.0 2.0 2 1 0 2 2 2 0 Terminase-like family KaiC PF06745.8 gi|386002194|ref|YP_005920493.1| - 0.019 14.0 0.0 0.035 13.2 0.0 1.4 1 0 0 1 1 1 0 KaiC DDE_Tnp_1 PF01609.16 gi|386002194|ref|YP_005920493.1| - 0.023 14.2 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain IstB_IS21 PF01695.12 gi|386002194|ref|YP_005920493.1| - 0.03 13.7 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Endonuclease_7 PF02945.10 gi|386002194|ref|YP_005920493.1| - 0.064 12.9 0.7 0.2 11.4 0.5 1.8 1 0 0 1 1 1 0 Recombination endonuclease VII Ada_Zn_binding PF02805.11 gi|386002194|ref|YP_005920493.1| - 0.069 12.7 0.0 0.21 11.1 0.0 1.9 1 0 0 1 1 1 0 Metal binding domain of Ada AAA_30 PF13604.1 gi|386002194|ref|YP_005920493.1| - 0.22 11.1 0.0 0.58 9.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain FMN_red PF03358.10 gi|386002195|ref|YP_005920494.1| - 1.1e-28 99.6 0.0 1.4e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|386002195|ref|YP_005920494.1| - 1.4e-10 41.0 0.0 1.8e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.4 gi|386002195|ref|YP_005920494.1| - 0.0082 15.7 0.1 0.011 15.3 0.1 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) DNA_pol_B PF00136.16 gi|386002196|ref|YP_005920495.1| - 4.9e-109 365.1 0.0 6.1e-109 364.8 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|386002196|ref|YP_005920495.1| - 3e-42 144.6 0.0 6.9e-42 143.4 0.0 1.6 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|386002196|ref|YP_005920495.1| - 0.003 17.1 0.0 0.0053 16.3 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|386002196|ref|YP_005920495.1| - 0.0056 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 RNase_H superfamily Pentapeptide_3 PF13576.1 gi|386002199|ref|YP_005920498.1| - 7.4e-51 169.8 109.9 2.8e-08 33.5 6.9 10.1 2 2 9 12 12 12 12 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|386002199|ref|YP_005920498.1| - 3.8e-06 26.6 80.9 0.052 13.3 13.2 7.0 1 1 5 6 6 6 2 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|386002199|ref|YP_005920498.1| - 5.8e-06 25.4 21.0 0.0023 17.1 0.1 9.7 7 5 1 8 8 8 2 Pentapeptide repeats (8 copies) TMEMspv1-c74-12 PF11044.3 gi|386002199|ref|YP_005920498.1| - 0.42 10.1 2.3 0.86 9.2 1.6 1.5 1 0 0 1 1 1 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein DUF4083 PF13314.1 gi|386002199|ref|YP_005920498.1| - 0.9 9.4 4.1 1.7 8.5 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) Peptidase_M22 PF00814.20 gi|386002200|ref|YP_005920499.1| - 3.1e-88 295.7 0.3 3.8e-88 295.4 0.2 1.0 1 0 0 1 1 1 1 Glycoprotease family CmcH_NodU PF02543.10 gi|386002200|ref|YP_005920499.1| - 0.054 12.6 0.0 0.07 12.2 0.0 1.1 1 0 0 1 1 1 0 Carbamoyltransferase GARS_A PF01071.14 gi|386002201|ref|YP_005920500.1| - 8.4e-60 201.6 0.0 9.5e-59 198.2 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|386002201|ref|YP_005920500.1| - 3.7e-27 94.7 0.0 7e-27 93.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|386002201|ref|YP_005920500.1| - 1.1e-24 86.4 0.0 2.6e-24 85.2 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|386002201|ref|YP_005920500.1| - 1.7e-06 27.8 0.1 5e-06 26.3 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain DNA_processg_A PF02481.10 gi|386002201|ref|YP_005920500.1| - 0.11 11.3 0.1 4.5 6.0 0.0 2.2 2 0 0 2 2 2 0 DNA recombination-mediator protein A Gln-synt_C PF00120.19 gi|386002202|ref|YP_005920501.1| - 6.3e-96 320.4 0.0 7.7e-96 320.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|386002202|ref|YP_005920501.1| - 2.5e-30 103.8 0.0 4.2e-30 103.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain AP_endonuc_2 PF01261.19 gi|386002204|ref|YP_005920503.1| - 9.1e-34 116.6 0.1 1.1e-33 116.3 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF2233 PF09992.4 gi|386002204|ref|YP_005920503.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2233) DUF2878 PF11086.3 gi|386002205|ref|YP_005920504.1| - 0.0051 16.8 7.8 0.094 12.7 0.3 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF2878) Response_reg PF00072.19 gi|386002206|ref|YP_005920505.1| - 7.6e-21 74.2 0.0 8.9e-21 73.9 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HAD PF12710.2 gi|386002206|ref|YP_005920505.1| - 0.073 13.2 0.0 0.078 13.1 0.0 1.1 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.16 gi|386002207|ref|YP_005920506.1| - 1.8e-20 73.8 0.0 8.9e-20 71.5 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|386002207|ref|YP_005920506.1| - 2.1e-18 66.1 0.0 4e-18 65.2 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Fer4_14 PF13394.1 gi|386002207|ref|YP_005920506.1| - 0.012 15.6 0.0 0.1 12.6 0.0 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|386002207|ref|YP_005920506.1| - 0.033 14.3 0.0 0.35 10.9 0.0 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain NosD PF05048.8 gi|386002208|ref|YP_005920507.1| - 2.4e-20 72.7 17.8 3.1e-20 72.3 12.4 1.1 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|386002208|ref|YP_005920507.1| - 3.2e-09 36.7 26.1 5.6e-09 35.9 18.0 1.5 1 1 0 1 1 1 1 Right handed beta helix region DUF1565 PF07602.6 gi|386002208|ref|YP_005920507.1| - 0.0002 20.5 13.5 0.0069 15.5 9.4 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.2 gi|386002208|ref|YP_005920507.1| - 0.27 11.3 13.5 4 7.4 9.4 2.4 1 1 0 1 1 1 0 Pectate lyase superfamily protein CSD PF00313.17 gi|386002209|ref|YP_005920508.1| - 6.9e-17 60.9 0.5 7.4e-17 60.8 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.6 gi|386002209|ref|YP_005920508.1| - 0.0074 15.7 1.8 0.013 14.9 1.3 1.5 1 1 0 1 1 1 1 Ribonuclease B OB domain PHP_C PF13263.1 gi|386002210|ref|YP_005920509.1| - 2.6e-16 58.8 0.5 4.6e-16 58.0 0.0 1.7 2 0 0 2 2 2 1 PHP-associated Aconitase PF00330.15 gi|386002211|ref|YP_005920510.1| - 3.4e-82 276.3 0.1 7.9e-55 186.1 0.0 2.5 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|386002211|ref|YP_005920510.1| - 0.04 12.4 0.0 0.061 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Citrate_synt PF00285.16 gi|386002212|ref|YP_005920511.1| - 8.1e-21 74.1 0.0 6.9e-20 71.0 0.0 2.3 2 1 0 2 2 2 1 Citrate synthase Ligase_CoA PF00549.14 gi|386002212|ref|YP_005920511.1| - 1.7e-13 50.4 0.1 4e-13 49.2 0.1 1.6 1 0 0 1 1 1 1 CoA-ligase CoA_binding PF02629.14 gi|386002212|ref|YP_005920511.1| - 5.1e-10 39.7 0.0 1.8e-09 37.9 0.0 2.0 1 0 0 1 1 1 1 CoA binding domain Succ_CoA_lig PF13607.1 gi|386002212|ref|YP_005920511.1| - 8.6e-05 22.1 0.1 0.0018 17.9 0.0 2.3 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain ATP-grasp_2 PF08442.5 gi|386002213|ref|YP_005920512.1| - 1.1e-09 37.9 0.0 1.9e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain PrmA PF06325.8 gi|386002214|ref|YP_005920513.1| - 0.0019 17.4 0.0 0.0026 16.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|386002214|ref|YP_005920513.1| - 0.0066 15.8 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|386002214|ref|YP_005920513.1| - 0.013 15.4 0.1 0.029 14.3 0.1 1.6 1 0 0 1 1 1 0 Methyltransferase domain Pentapeptide PF00805.17 gi|386002215|ref|YP_005920514.1| - 4e-24 83.4 27.2 7.6e-10 37.8 3.6 4.3 1 1 2 4 4 4 3 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.1 gi|386002215|ref|YP_005920514.1| - 9.5e-14 51.0 11.8 1.9e-06 27.6 0.4 3.4 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|386002215|ref|YP_005920514.1| - 3.6e-13 49.1 1.5 2.6e-07 30.3 0.2 2.3 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) DUF2254 PF10011.4 gi|386002215|ref|YP_005920514.1| - 9.5e-06 24.3 10.5 1.4e-05 23.8 7.3 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) DUF3307 PF11750.3 gi|386002216|ref|YP_005920515.1| - 9.9e-25 86.7 3.7 2.1e-24 85.6 2.6 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3307) Sigma70_r4 PF04545.11 gi|386002217|ref|YP_005920516.1| - 0.00035 19.8 0.1 0.001 18.3 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|386002217|ref|YP_005920516.1| - 0.0023 17.3 0.0 0.0043 16.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|386002217|ref|YP_005920516.1| - 0.028 13.7 0.0 0.065 12.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|386002217|ref|YP_005920516.1| - 0.12 12.3 0.0 0.37 10.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0104 PF03706.8 gi|386002218|ref|YP_005920517.1| - 8.2e-34 117.2 35.3 1e-33 116.8 24.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) ThiI PF02568.9 gi|386002220|ref|YP_005920519.1| - 9.3e-51 172.0 0.0 1.2e-50 171.7 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|386002220|ref|YP_005920519.1| - 6.5e-18 64.9 0.0 9.2e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|386002220|ref|YP_005920519.1| - 0.00012 21.4 0.0 0.29 10.3 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|386002220|ref|YP_005920519.1| - 0.19 10.2 0.0 0.45 9.0 0.0 1.6 2 0 0 2 2 2 0 tRNA methyl transferase HTH_5 PF01022.15 gi|386002223|ref|YP_005920522.1| - 5.2e-15 54.8 0.8 4.1e-14 51.9 0.0 2.4 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|386002223|ref|YP_005920522.1| - 6.8e-12 45.0 0.1 1.5e-11 43.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|386002223|ref|YP_005920522.1| - 0.0069 16.0 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RP-C PF03428.8 gi|386002223|ref|YP_005920522.1| - 0.028 13.8 0.0 0.04 13.3 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_DeoR PF08220.7 gi|386002223|ref|YP_005920522.1| - 0.037 13.5 0.0 0.65 9.5 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|386002223|ref|YP_005920522.1| - 0.039 13.9 0.0 0.12 12.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|386002223|ref|YP_005920522.1| - 0.063 13.6 0.1 0.17 12.2 0.0 1.7 2 1 0 2 2 2 0 Winged helix DNA-binding domain MarR PF01047.17 gi|386002223|ref|YP_005920522.1| - 0.066 12.9 0.0 0.15 11.7 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_38 PF13936.1 gi|386002223|ref|YP_005920522.1| - 0.069 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.6 gi|386002223|ref|YP_005920522.1| - 0.072 12.4 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain Cdc6_C PF09079.6 gi|386002223|ref|YP_005920522.1| - 0.074 12.7 0.1 0.22 11.2 0.0 1.7 1 1 1 2 2 2 0 CDC6, C terminal Penicillinase_R PF03965.11 gi|386002223|ref|YP_005920522.1| - 0.12 12.5 0.0 0.17 11.9 0.0 1.4 1 1 0 1 1 1 0 Penicillinase repressor DUF318 PF03773.8 gi|386002224|ref|YP_005920523.1| - 1.8e-71 240.6 21.7 2.1e-71 240.4 15.1 1.0 1 0 0 1 1 1 1 Predicted permease DsbD PF02683.10 gi|386002226|ref|YP_005920525.1| - 1.8e-18 66.9 14.9 2.7e-18 66.3 10.3 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2910 PF11139.3 gi|386002226|ref|YP_005920525.1| - 0.0041 16.2 20.8 0.0056 15.8 9.8 2.9 2 1 1 3 3 3 2 Protein of unknown function (DUF2910) Rhodanese PF00581.15 gi|386002227|ref|YP_005920526.1| - 1.6e-21 76.7 0.0 1.3e-09 38.4 0.0 2.5 3 0 0 3 3 3 2 Rhodanese-like domain Thioredoxin_3 PF13192.1 gi|386002228|ref|YP_005920527.1| - 2.7e-27 94.3 1.3 3.1e-27 94.1 0.9 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|386002228|ref|YP_005920527.1| - 0.00036 20.4 0.1 0.00059 19.7 0.1 1.4 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|386002228|ref|YP_005920527.1| - 0.0012 18.8 0.1 0.015 15.2 0.0 1.9 1 1 1 2 2 2 2 Thioredoxin Tox-PL-2 PF15643.1 gi|386002228|ref|YP_005920527.1| - 0.02 14.8 0.0 0.021 14.8 0.0 1.1 1 0 0 1 1 1 0 Papain fold toxin 2 Thioredoxin PF00085.15 gi|386002228|ref|YP_005920527.1| - 0.024 14.3 0.0 0.024 14.2 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin DGC PF08859.6 gi|386002229|ref|YP_005920528.1| - 3.3e-31 107.3 1.1 4.1e-31 107.1 0.8 1.1 1 0 0 1 1 1 1 DGC domain Methyltransf_31 PF13847.1 gi|386002230|ref|YP_005920529.1| - 4.1e-40 136.8 0.0 6e-40 136.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386002230|ref|YP_005920529.1| - 2.6e-23 82.2 0.0 5.4e-23 81.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386002230|ref|YP_005920529.1| - 8.8e-20 70.8 0.0 1.4e-19 70.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|386002230|ref|YP_005920529.1| - 2.6e-18 66.6 0.1 6.3e-18 65.3 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386002230|ref|YP_005920529.1| - 2.5e-14 53.4 0.0 4.5e-14 52.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386002230|ref|YP_005920529.1| - 1.8e-13 50.7 0.0 2.9e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386002230|ref|YP_005920529.1| - 6.9e-13 48.6 0.0 9.9e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386002230|ref|YP_005920529.1| - 5.3e-11 42.5 0.0 1.1e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|386002230|ref|YP_005920529.1| - 2.4e-10 40.2 0.0 4.2e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|386002230|ref|YP_005920529.1| - 5e-10 39.0 0.0 1.1e-09 37.9 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase small domain PrmA PF06325.8 gi|386002230|ref|YP_005920529.1| - 2.8e-09 36.5 0.1 3.7e-09 36.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|386002230|ref|YP_005920529.1| - 1.2e-06 28.3 0.0 2.6e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|386002230|ref|YP_005920529.1| - 1.2e-05 24.5 0.0 1.6e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|386002230|ref|YP_005920529.1| - 2.1e-05 24.2 0.0 3.1e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|386002230|ref|YP_005920529.1| - 4.5e-05 23.0 0.0 6.3e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.12 gi|386002230|ref|YP_005920529.1| - 0.00087 18.3 0.0 0.0022 17.0 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_3 PF01596.12 gi|386002230|ref|YP_005920529.1| - 0.0012 17.9 0.0 0.0017 17.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase FtsJ PF01728.14 gi|386002230|ref|YP_005920529.1| - 0.032 14.2 0.0 0.068 13.1 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase Yeast-kill-tox PF09207.6 gi|386002230|ref|YP_005920529.1| - 0.076 13.4 0.1 0.14 12.6 0.1 1.4 1 0 0 1 1 1 0 Yeast killer toxin DOT1 PF08123.8 gi|386002230|ref|YP_005920529.1| - 0.15 11.3 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Fibrillarin PF01269.12 gi|386002230|ref|YP_005920529.1| - 0.15 10.9 0.0 0.64 8.8 0.0 1.8 2 0 0 2 2 2 0 Fibrillarin GCD14 PF08704.5 gi|386002230|ref|YP_005920529.1| - 0.16 11.4 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit GidB PF02527.10 gi|386002230|ref|YP_005920529.1| - 0.17 11.0 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G LMWPc PF01451.16 gi|386002231|ref|YP_005920530.1| - 9.1e-25 87.5 0.1 1.1e-24 87.3 0.1 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Fer4_13 PF13370.1 gi|386002232|ref|YP_005920531.1| - 2.6e-14 53.3 2.4 3.4e-14 52.9 1.7 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|386002232|ref|YP_005920531.1| - 1.7e-13 50.9 2.9 2e-13 50.6 2.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|386002232|ref|YP_005920531.1| - 2.6e-05 23.6 5.7 0.00021 20.7 0.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386002232|ref|YP_005920531.1| - 0.0002 21.0 3.4 0.00071 19.3 2.4 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386002232|ref|YP_005920531.1| - 0.00079 19.6 3.1 0.013 15.7 2.3 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002232|ref|YP_005920531.1| - 0.0015 18.5 2.6 0.0031 17.5 1.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386002232|ref|YP_005920531.1| - 0.0049 17.1 1.4 0.0094 16.2 1.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386002232|ref|YP_005920531.1| - 0.0063 16.3 1.9 0.0063 16.3 1.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386002232|ref|YP_005920531.1| - 0.0067 17.1 3.0 0.048 14.4 1.8 2.0 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|386002232|ref|YP_005920531.1| - 0.007 16.2 4.0 0.018 14.9 2.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386002232|ref|YP_005920531.1| - 0.016 15.5 5.6 0.19 12.1 1.2 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386002232|ref|YP_005920531.1| - 0.018 15.3 1.3 0.018 15.3 0.9 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Nitro_FeMo-Co PF02579.12 gi|386002232|ref|YP_005920531.1| - 0.15 12.1 0.0 0.18 11.9 0.0 1.1 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor Fer4_6 PF12837.2 gi|386002232|ref|YP_005920531.1| - 0.37 10.7 6.3 0.41 10.6 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|386002232|ref|YP_005920531.1| - 1.8 9.0 5.6 0.78 10.2 1.6 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain DsrH PF04077.7 gi|386002233|ref|YP_005920532.1| - 1.4e-06 27.8 0.0 1.8e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 DsrH like protein DrsE PF02635.10 gi|386002234|ref|YP_005920533.1| - 7.4e-14 51.8 0.0 8e-14 51.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Transketolase_C PF02780.15 gi|386002234|ref|YP_005920533.1| - 0.081 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Transketolase, C-terminal domain DsrH PF04077.7 gi|386002234|ref|YP_005920533.1| - 0.13 11.9 0.0 0.38 10.4 0.0 1.7 1 1 0 1 1 1 0 DsrH like protein DrsE PF02635.10 gi|386002235|ref|YP_005920534.1| - 2e-15 56.9 0.0 2.3e-15 56.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family FTCD_N PF07837.7 gi|386002235|ref|YP_005920534.1| - 0.059 12.8 0.0 0.078 12.4 0.0 1.2 1 0 0 1 1 1 0 Formiminotransferase domain, N-terminal subdomain FeS PF04060.8 gi|386002236|ref|YP_005920535.1| - 5.5e-12 45.0 1.5 6.3e-12 44.8 0.4 1.7 2 0 0 2 2 2 1 Putative Fe-S cluster HTH_20 PF12840.2 gi|386002236|ref|YP_005920535.1| - 8.7e-08 31.8 0.0 3.8e-07 29.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|386002236|ref|YP_005920535.1| - 8.5e-06 25.3 0.0 2e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family YhfH PF14149.1 gi|386002236|ref|YP_005920535.1| - 0.0055 16.4 0.1 0.011 15.5 0.1 1.5 1 0 0 1 1 1 1 YhfH-like protein AAA_assoc_C PF09821.4 gi|386002236|ref|YP_005920535.1| - 0.032 14.4 0.1 0.16 12.2 0.0 2.0 2 0 0 2 2 2 0 C-terminal AAA-associated domain HTH_12 PF08461.5 gi|386002236|ref|YP_005920535.1| - 0.041 13.6 0.0 0.096 12.4 0.0 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain ArsR PF09824.4 gi|386002236|ref|YP_005920535.1| - 0.085 12.1 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 ArsR transcriptional regulator DUF2513 PF10711.4 gi|386002236|ref|YP_005920535.1| - 0.096 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DsbD PF02683.10 gi|386002237|ref|YP_005920536.1| - 2.7e-20 72.8 15.6 6e-20 71.7 10.8 1.8 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|386002237|ref|YP_005920536.1| - 1.9e-11 44.1 21.7 2.9e-07 30.4 3.2 3.0 2 1 0 2 2 2 2 Cytochrome C biogenesis protein transmembrane region Redoxin PF08534.5 gi|386002237|ref|YP_005920536.1| - 9.8e-07 28.4 0.0 1.7e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|386002237|ref|YP_005920536.1| - 2e-06 27.5 0.0 5.9e-06 25.9 0.0 1.8 1 1 0 1 1 1 1 AhpC/TSA family MpPF26 PF07666.6 gi|386002237|ref|YP_005920536.1| - 0.086 12.7 0.3 0.086 12.7 0.2 2.5 3 1 0 3 3 3 0 M penetrans paralogue family 26 DUF4538 PF15061.1 gi|386002238|ref|YP_005920537.1| - 0.038 13.2 0.9 0.064 12.5 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4538) AhpC-TSA PF00578.16 gi|386002238|ref|YP_005920537.1| - 0.038 13.6 0.0 0.1 12.3 0.0 1.7 1 1 0 1 1 1 0 AhpC/TSA family Thioredoxin_2 PF13098.1 gi|386002238|ref|YP_005920537.1| - 0.067 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|386002238|ref|YP_005920537.1| - 0.071 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like HTH_5 PF01022.15 gi|386002239|ref|YP_005920538.1| - 7e-06 25.6 0.8 1.8e-05 24.3 0.5 1.8 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|386002239|ref|YP_005920538.1| - 8.4e-06 25.5 0.5 0.00017 21.3 0.0 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain SBF PF01758.11 gi|386002240|ref|YP_005920539.1| - 4.1e-60 202.4 16.4 4.1e-60 202.4 11.3 2.4 2 1 0 2 2 2 1 Sodium Bile acid symporter family Rhodanese PF00581.15 gi|386002241|ref|YP_005920540.1| - 5.9e-17 62.0 0.0 1.6e-09 38.0 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain SIS PF01380.17 gi|386002241|ref|YP_005920540.1| - 0.097 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 SIS domain HTH_20 PF12840.2 gi|386002243|ref|YP_005920542.1| - 1e-19 70.0 0.4 2.1e-17 62.6 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|386002243|ref|YP_005920542.1| - 1.8e-18 65.9 0.3 3.1e-18 65.1 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|386002243|ref|YP_005920542.1| - 1.2e-05 24.9 0.0 2.4e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF742 PF05331.6 gi|386002243|ref|YP_005920542.1| - 0.0013 18.3 0.1 0.0015 18.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_IclR PF09339.5 gi|386002243|ref|YP_005920542.1| - 0.011 15.3 1.0 0.034 13.7 0.2 2.2 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_34 PF13601.1 gi|386002243|ref|YP_005920542.1| - 0.023 14.7 0.1 0.044 13.8 0.0 1.5 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|386002243|ref|YP_005920542.1| - 0.026 14.3 0.0 0.051 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix PaaX PF07848.7 gi|386002243|ref|YP_005920542.1| - 0.033 14.1 0.4 0.1 12.6 0.1 1.9 1 1 1 2 2 2 0 PaaX-like protein MarR_2 PF12802.2 gi|386002243|ref|YP_005920542.1| - 0.047 13.3 0.2 0.11 12.1 0.1 1.7 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|386002243|ref|YP_005920542.1| - 0.057 13.5 0.1 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|386002243|ref|YP_005920542.1| - 0.061 13.6 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|386002243|ref|YP_005920542.1| - 0.068 12.7 0.2 1.4 8.4 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain DUF4423 PF14394.1 gi|386002243|ref|YP_005920542.1| - 0.08 12.4 0.1 0.75 9.3 0.0 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4423) DUF2250 PF10007.4 gi|386002243|ref|YP_005920542.1| - 0.092 12.6 0.0 0.24 11.3 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Rhodanese PF00581.15 gi|386002244|ref|YP_005920543.1| - 1.4e-18 67.3 0.0 1.5e-10 41.4 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain DUF2335 PF10097.4 gi|386002244|ref|YP_005920543.1| - 0.038 13.6 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2335) Lum_binding PF00677.12 gi|386002246|ref|YP_005920545.1| - 0.028 14.2 0.1 0.073 12.9 0.0 1.6 1 0 0 1 1 1 0 Lumazine binding domain Ni_hydr_CYTB PF01292.15 gi|386002247|ref|YP_005920546.1| - 8.1 5.7 10.7 0.22 10.8 1.7 2.3 2 1 1 3 3 3 0 Prokaryotic cytochrome b561 Exo_endo_phos PF03372.18 gi|386002248|ref|YP_005920547.1| - 5.7e-20 72.3 0.0 6.9e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|386002248|ref|YP_005920547.1| - 0.0076 15.8 0.0 0.028 14.0 0.0 1.8 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase ABC_tran PF00005.22 gi|386002249|ref|YP_005920548.1| - 3.3e-31 108.4 0.0 4.7e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386002249|ref|YP_005920548.1| - 8.2e-12 45.6 0.2 1.6e-05 25.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|386002249|ref|YP_005920548.1| - 1.4e-07 30.9 0.1 0.0018 17.4 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|386002249|ref|YP_005920548.1| - 3.4e-06 27.2 0.9 0.00012 22.2 0.6 2.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|386002249|ref|YP_005920548.1| - 4.2e-05 22.8 0.4 0.0014 17.8 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|386002249|ref|YP_005920548.1| - 0.00013 22.0 0.2 0.00023 21.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|386002249|ref|YP_005920548.1| - 0.0002 20.7 0.1 0.00043 19.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|386002249|ref|YP_005920548.1| - 0.00026 21.4 0.0 0.00027 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|386002249|ref|YP_005920548.1| - 0.0022 17.8 0.1 0.029 14.2 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|386002249|ref|YP_005920548.1| - 0.0028 17.3 0.1 0.006 16.2 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|386002249|ref|YP_005920548.1| - 0.0037 17.4 0.2 0.04 14.1 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.4 gi|386002249|ref|YP_005920548.1| - 0.0038 15.8 0.6 1 7.8 0.1 3.0 2 2 0 2 2 2 1 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|386002249|ref|YP_005920548.1| - 0.0042 16.8 0.1 0.012 15.3 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain NB-ARC PF00931.17 gi|386002249|ref|YP_005920548.1| - 0.0046 15.8 0.0 0.0086 14.9 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_33 PF13671.1 gi|386002249|ref|YP_005920548.1| - 0.011 15.6 0.1 0.033 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|386002249|ref|YP_005920548.1| - 0.011 14.8 0.0 0.024 13.8 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|386002249|ref|YP_005920548.1| - 0.018 14.4 0.0 0.034 13.5 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain ArgK PF03308.11 gi|386002249|ref|YP_005920548.1| - 0.019 13.7 0.0 0.033 12.9 0.0 1.4 1 0 0 1 1 1 0 ArgK protein UPF0079 PF02367.12 gi|386002249|ref|YP_005920548.1| - 0.02 14.5 0.0 0.056 13.0 0.0 1.7 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|386002249|ref|YP_005920548.1| - 0.024 13.8 0.1 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|386002249|ref|YP_005920548.1| - 0.026 14.2 0.1 0.44 10.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) G-alpha PF00503.15 gi|386002249|ref|YP_005920548.1| - 0.037 12.7 0.0 0.071 11.7 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit NACHT PF05729.7 gi|386002249|ref|YP_005920548.1| - 0.047 13.3 0.4 0.11 12.0 0.3 1.9 1 1 0 1 1 1 0 NACHT domain SRP54 PF00448.17 gi|386002249|ref|YP_005920548.1| - 0.055 12.8 0.1 0.11 11.8 0.0 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|386002249|ref|YP_005920548.1| - 0.068 13.0 0.1 0.4 10.5 0.0 2.2 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|386002249|ref|YP_005920548.1| - 0.069 12.2 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.1 gi|386002249|ref|YP_005920548.1| - 0.078 12.5 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|386002249|ref|YP_005920548.1| - 0.086 12.2 0.1 0.18 11.2 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|386002249|ref|YP_005920548.1| - 0.092 12.4 0.6 0.25 11.0 0.1 1.8 2 0 0 2 2 2 0 NTPase PduV-EutP PF10662.4 gi|386002249|ref|YP_005920548.1| - 0.13 11.7 0.6 1.1 8.7 0.0 2.3 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation FecCD PF01032.13 gi|386002250|ref|YP_005920549.1| - 3.8e-97 324.8 40.0 4.7e-97 324.5 27.7 1.0 1 0 0 1 1 1 1 FecCD transport family BPD_transp_2 PF02653.11 gi|386002250|ref|YP_005920549.1| - 0.00011 21.3 31.2 0.00011 21.3 21.6 2.8 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component ABC-3 PF00950.12 gi|386002250|ref|YP_005920549.1| - 0.088 12.0 30.4 0.0042 16.4 17.3 1.6 2 0 0 2 2 2 0 ABC 3 transport family Metallophos_2 PF12850.2 gi|386002253|ref|YP_005920552.1| - 7.4e-13 48.6 0.0 9.3e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|386002253|ref|YP_005920552.1| - 1.9e-11 43.6 0.0 1.1e-10 41.0 0.0 1.9 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|386002253|ref|YP_005920552.1| - 2.8e-09 36.6 0.1 2.8e-06 26.8 0.0 2.1 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Penicillinase_R PF03965.11 gi|386002254|ref|YP_005920553.1| - 0.05 13.6 0.0 0.073 13.1 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor DUF2207 PF09972.4 gi|386002255|ref|YP_005920554.1| - 1.2e-68 231.9 0.3 1.6e-68 231.5 0.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) LemA PF04011.7 gi|386002256|ref|YP_005920555.1| - 5.1e-49 165.9 0.1 6.3e-49 165.6 0.1 1.0 1 0 0 1 1 1 1 LemA family DUF3552 PF12072.3 gi|386002256|ref|YP_005920555.1| - 0.047 12.8 0.1 0.071 12.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) CCDC32 PF14989.1 gi|386002256|ref|YP_005920555.1| - 0.053 13.3 0.1 0.09 12.6 0.1 1.4 1 0 0 1 1 1 0 Coiled-coil domain containing 32 Nbl1_Borealin_N PF10444.4 gi|386002256|ref|YP_005920555.1| - 0.12 11.7 1.8 18 4.7 0.2 3.1 3 0 0 3 3 3 0 Nbl1 / Borealin N terminal Col_cuticle_N PF01484.12 gi|386002256|ref|YP_005920555.1| - 0.24 11.1 0.8 0.65 9.7 0.1 2.0 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain DUF3948 PF13134.1 gi|386002256|ref|YP_005920555.1| - 0.47 9.9 2.4 0.85 9.1 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3948) zf-RING_2 PF13639.1 gi|386002257|ref|YP_005920556.1| - 0.083 12.7 0.2 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 Ring finger domain AIRS_C PF02769.17 gi|386002258|ref|YP_005920557.1| - 6.3e-39 133.4 0.0 4.1e-22 78.8 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|386002258|ref|YP_005920557.1| - 2e-31 108.0 5.1 1.1e-17 64.0 0.3 3.1 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain GATase_5 PF13507.1 gi|386002259|ref|YP_005920558.1| - 3e-53 180.3 0.0 3.4e-53 180.1 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|386002259|ref|YP_005920558.1| - 3.7e-10 39.5 0.0 5.9e-10 38.9 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|386002259|ref|YP_005920558.1| - 5.2e-09 35.8 0.0 2.3e-08 33.8 0.0 1.9 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|386002259|ref|YP_005920558.1| - 2.3e-08 33.5 0.0 2.9e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|386002259|ref|YP_005920558.1| - 1.2e-06 27.9 0.0 2.7e-06 26.7 0.0 1.6 2 0 0 2 2 2 1 Putative amidotransferase SNO PF01174.14 gi|386002259|ref|YP_005920558.1| - 4.8e-05 23.0 0.0 8.1e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|386002259|ref|YP_005920558.1| - 0.0013 18.2 0.0 0.0022 17.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 PurS PF02700.9 gi|386002260|ref|YP_005920559.1| - 6.7e-07 29.1 0.0 0.018 15.0 0.0 2.1 2 0 0 2 2 2 2 Phosphoribosylformylglycinamidine (FGAM) synthase ERCC4 PF02732.10 gi|386002261|ref|YP_005920560.1| - 6.7e-26 90.7 0.0 1.4e-25 89.6 0.0 1.6 1 0 0 1 1 1 1 ERCC4 domain DEAD PF00270.24 gi|386002261|ref|YP_005920560.1| - 1.7e-19 69.9 0.0 4.3e-19 68.6 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|386002261|ref|YP_005920560.1| - 3.8e-19 68.3 0.2 1.5e-18 66.4 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|386002261|ref|YP_005920560.1| - 8.6e-18 64.8 0.0 1.5e-17 63.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|386002261|ref|YP_005920560.1| - 4.6e-12 45.6 0.0 1.8e-11 43.7 0.0 2.0 2 0 0 2 2 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|386002261|ref|YP_005920560.1| - 8e-11 41.9 0.1 4.9e-10 39.4 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|386002261|ref|YP_005920560.1| - 5.8e-08 32.0 0.1 4.7e-06 26.0 0.1 3.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNF2_N PF00176.18 gi|386002261|ref|YP_005920560.1| - 0.0015 17.3 0.0 0.0027 16.5 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain 5_3_exonuc PF01367.15 gi|386002261|ref|YP_005920560.1| - 0.0017 18.5 0.0 0.0068 16.6 0.0 2.0 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold DUF2075 PF09848.4 gi|386002261|ref|YP_005920560.1| - 0.0051 15.8 0.0 0.011 14.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) HHH_3 PF12836.2 gi|386002261|ref|YP_005920560.1| - 0.0084 16.0 0.0 0.045 13.6 0.0 2.2 1 1 0 1 1 1 1 Helix-hairpin-helix motif AAA_11 PF13086.1 gi|386002261|ref|YP_005920560.1| - 0.052 13.1 0.1 0.27 10.7 0.0 2.1 1 1 1 2 2 2 0 AAA domain HHH_8 PF14716.1 gi|386002261|ref|YP_005920560.1| - 0.08 13.1 0.0 7.6 6.8 0.0 3.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain Curto_V3 PF07436.6 gi|386002263|ref|YP_005920562.1| - 0.031 14.4 0.0 4.1 7.6 0.0 2.1 2 0 0 2 2 2 0 Curtovirus V3 protein ISN1 PF06437.6 gi|386002263|ref|YP_005920562.1| - 0.096 11.3 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 IMP-specific 5'-nucleotidase DNA_pol_B PF00136.16 gi|386002265|ref|YP_005920564.1| - 2.4e-20 72.7 0.0 2e-18 66.4 0.0 2.4 1 1 0 1 1 1 1 DNA polymerase family B DUF772 PF05598.6 gi|386002266|ref|YP_005920565.1| - 2.3e-21 75.4 0.1 5.2e-21 74.3 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|386002266|ref|YP_005920565.1| - 4.3e-12 46.0 0.2 8e-12 45.1 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|386002266|ref|YP_005920565.1| - 1.4e-05 24.7 0.0 3.3e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease Translin PF01997.11 gi|386002268|ref|YP_005920567.1| - 6.5e-35 120.5 0.0 8.1e-35 120.2 0.0 1.1 1 0 0 1 1 1 1 Translin family UBA_4 PF14555.1 gi|386002268|ref|YP_005920567.1| - 0.036 13.6 0.0 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 UBA-like domain BMFP PF04380.8 gi|386002268|ref|YP_005920567.1| - 0.11 12.6 4.5 0.22 11.7 0.2 2.3 2 0 0 2 2 2 0 Membrane fusogenic activity AP_endonuc_2 PF01261.19 gi|386002269|ref|YP_005920568.1| - 3.7e-30 104.7 0.0 4.6e-30 104.5 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel RNA_binding PF01877.12 gi|386002270|ref|YP_005920569.1| - 1.4e-25 89.6 0.0 2e-25 89.0 0.0 1.2 1 0 0 1 1 1 1 RNA binding eRF1_2 PF03464.10 gi|386002271|ref|YP_005920570.1| - 2.2e-37 128.3 0.0 3.6e-37 127.6 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|386002271|ref|YP_005920570.1| - 1.5e-31 108.9 0.0 4.7e-31 107.3 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|386002271|ref|YP_005920570.1| - 8.1e-24 83.6 0.0 2.1e-23 82.3 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 1 PNP_UDP_1 PF01048.15 gi|386002272|ref|YP_005920571.1| - 4.4e-42 143.6 0.8 4.9e-42 143.5 0.6 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Methyltransf_11 PF08241.7 gi|386002273|ref|YP_005920572.1| - 5.9e-21 74.7 0.0 8.8e-21 74.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386002273|ref|YP_005920572.1| - 2.7e-18 65.9 0.0 3.5e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386002273|ref|YP_005920572.1| - 8.1e-15 55.3 0.1 1.3e-14 54.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386002273|ref|YP_005920572.1| - 3e-14 53.0 0.0 4e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386002273|ref|YP_005920572.1| - 6.7e-13 48.9 0.0 1e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386002273|ref|YP_005920572.1| - 4.5e-12 46.2 0.0 6.5e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386002273|ref|YP_005920572.1| - 5.4e-12 45.7 0.1 1e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|386002273|ref|YP_005920572.1| - 2.9e-09 36.5 0.0 4.1e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|386002273|ref|YP_005920572.1| - 1.9e-07 30.4 0.0 2.5e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|386002273|ref|YP_005920572.1| - 8.5e-06 25.2 0.0 1.2e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|386002273|ref|YP_005920572.1| - 1.4e-05 24.3 0.0 1.8e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.6 gi|386002273|ref|YP_005920572.1| - 7.5e-05 22.2 0.0 0.0001 21.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.1 gi|386002273|ref|YP_005920572.1| - 0.00031 20.4 0.0 0.00048 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|386002273|ref|YP_005920572.1| - 0.0012 18.0 0.0 0.0017 17.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|386002273|ref|YP_005920572.1| - 0.0019 17.3 0.0 0.0024 16.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|386002273|ref|YP_005920572.1| - 0.003 16.3 0.0 0.0038 15.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) DREV PF05219.7 gi|386002273|ref|YP_005920572.1| - 0.019 13.8 0.0 0.026 13.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_8 PF05148.10 gi|386002273|ref|YP_005920572.1| - 0.04 13.5 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase TPMT PF05724.6 gi|386002273|ref|YP_005920572.1| - 0.061 12.7 0.0 0.097 12.0 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.8 gi|386002273|ref|YP_005920572.1| - 0.18 10.9 0.0 0.23 10.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PKD PF00801.15 gi|386002274|ref|YP_005920573.1| - 4.7e-06 26.2 0.1 8.9e-06 25.3 0.1 1.6 1 1 0 1 1 1 1 PKD domain Big_3_4 PF13754.1 gi|386002274|ref|YP_005920573.1| - 8.7e-05 22.7 2.6 8.7e-05 22.7 0.2 2.0 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) HYR PF02494.11 gi|386002274|ref|YP_005920573.1| - 0.002 18.0 0.0 0.003 17.5 0.0 1.3 1 0 0 1 1 1 1 HYR domain BiPBP_C PF06832.7 gi|386002274|ref|YP_005920573.1| - 0.011 15.5 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family He_PIG PF05345.7 gi|386002274|ref|YP_005920573.1| - 0.068 13.2 3.3 0.13 12.3 0.9 2.5 2 1 0 2 2 2 0 Putative Ig domain Cadherin PF00028.12 gi|386002274|ref|YP_005920573.1| - 0.099 12.9 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Cadherin domain DUF4625 PF15418.1 gi|386002274|ref|YP_005920573.1| - 0.13 12.3 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) SprB PF13573.1 gi|386002274|ref|YP_005920573.1| - 1.1 8.9 0.0 1.1 8.9 0.0 2.5 3 0 0 3 3 3 0 SprB repeat CbiA PF01656.18 gi|386002275|ref|YP_005920574.1| - 4.8e-24 84.8 0.0 6.2e-24 84.4 0.0 1.0 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|386002275|ref|YP_005920574.1| - 3.7e-06 26.3 0.1 5.4e-05 22.5 0.1 2.1 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|386002275|ref|YP_005920574.1| - 3.7e-06 26.9 0.0 8.6e-05 22.5 0.0 2.4 2 1 1 3 3 3 1 AAA domain DUF87 PF01935.12 gi|386002275|ref|YP_005920574.1| - 4.9e-05 23.2 0.1 0.00028 20.7 0.1 2.0 1 1 1 2 2 2 1 Domain of unknown function DUF87 AAA_30 PF13604.1 gi|386002275|ref|YP_005920574.1| - 0.00069 19.2 0.0 0.035 13.6 0.0 2.3 3 0 0 3 3 2 1 AAA domain ArsA_ATPase PF02374.10 gi|386002275|ref|YP_005920574.1| - 0.00077 18.5 0.0 0.032 13.2 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase ABC_tran PF00005.22 gi|386002275|ref|YP_005920574.1| - 0.0014 18.9 0.0 0.0016 18.6 0.0 1.5 1 1 0 1 1 1 1 ABC transporter MobB PF03205.9 gi|386002275|ref|YP_005920574.1| - 0.0017 18.0 0.0 0.0046 16.6 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|386002275|ref|YP_005920574.1| - 0.0017 18.2 0.0 0.0047 16.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|386002275|ref|YP_005920574.1| - 0.0077 16.2 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|386002275|ref|YP_005920574.1| - 0.015 15.4 0.0 0.37 10.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_26 PF13500.1 gi|386002275|ref|YP_005920574.1| - 0.016 14.8 0.5 0.057 13.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|386002275|ref|YP_005920574.1| - 0.031 14.4 0.0 0.071 13.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|386002275|ref|YP_005920574.1| - 0.037 13.4 0.6 0.34 10.2 0.1 2.3 2 1 1 3 3 3 0 AAA domain NB-ARC PF00931.17 gi|386002275|ref|YP_005920574.1| - 0.041 12.7 0.2 0.07 11.9 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain ArgK PF03308.11 gi|386002275|ref|YP_005920574.1| - 0.057 12.1 0.1 0.091 11.5 0.1 1.3 1 0 0 1 1 1 0 ArgK protein PEPCK_ATP PF01293.15 gi|386002275|ref|YP_005920574.1| - 0.061 11.8 0.8 0.093 11.2 0.5 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase MipZ PF09140.6 gi|386002275|ref|YP_005920574.1| - 0.085 11.9 0.1 5 6.1 0.0 2.7 2 1 1 3 3 3 0 ATPase MipZ AAA_19 PF13245.1 gi|386002275|ref|YP_005920574.1| - 0.13 12.0 0.4 0.3 10.8 0.3 1.6 1 0 0 1 1 1 0 Part of AAA domain STAT6_C PF14596.1 gi|386002275|ref|YP_005920574.1| - 0.17 11.7 0.0 0.27 11.1 0.0 1.2 1 0 0 1 1 1 0 STAT6 C-terminal AAA_17 PF13207.1 gi|386002275|ref|YP_005920574.1| - 0.18 12.6 1.0 1.4 9.7 0.6 2.5 1 1 1 2 2 2 0 AAA domain SRP54 PF00448.17 gi|386002275|ref|YP_005920574.1| - 0.18 11.2 0.7 3.7 6.9 0.2 2.7 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain Ribosomal_S3Ae PF01015.13 gi|386002276|ref|YP_005920575.1| - 7.4e-74 247.2 1.1 8.9e-74 247.0 0.7 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DUF4460 PF14687.1 gi|386002276|ref|YP_005920575.1| - 0.028 14.1 0.1 0.5 10.1 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4460) Lactamase_B PF00753.22 gi|386002278|ref|YP_005920577.1| - 8.4e-24 84.2 0.1 1.4e-23 83.5 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|386002278|ref|YP_005920577.1| - 0.0037 16.8 0.0 0.0095 15.4 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain ApbA_C PF08546.6 gi|386002279|ref|YP_005920578.1| - 3.2e-38 130.5 0.1 4.3e-38 130.1 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|386002279|ref|YP_005920578.1| - 3.8e-19 68.6 0.0 7.9e-18 64.3 0.0 2.5 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Methyltransf_31 PF13847.1 gi|386002280|ref|YP_005920579.1| - 5.8e-17 61.6 0.2 8.3e-17 61.1 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|386002280|ref|YP_005920579.1| - 2.7e-15 56.2 0.1 3.8e-15 55.8 0.1 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_18 PF12847.2 gi|386002280|ref|YP_005920579.1| - 4.3e-13 49.8 0.0 2.5e-12 47.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386002280|ref|YP_005920579.1| - 1.6e-12 47.7 0.0 2.6e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386002280|ref|YP_005920579.1| - 3.3e-12 46.7 0.0 4.9e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386002280|ref|YP_005920579.1| - 1.2e-11 44.8 0.0 1.8e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386002280|ref|YP_005920579.1| - 3.6e-09 36.5 0.0 5.3e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|386002280|ref|YP_005920579.1| - 7.3e-09 35.2 0.0 9.7e-09 34.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|386002280|ref|YP_005920579.1| - 4.4e-06 26.7 0.0 6.4e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|386002280|ref|YP_005920579.1| - 0.00014 21.0 1.9 0.00029 20.0 1.3 1.6 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.6 gi|386002280|ref|YP_005920579.1| - 0.00033 20.1 0.0 0.00096 18.6 0.0 1.6 2 0 0 2 2 2 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_24 PF13578.1 gi|386002280|ref|YP_005920579.1| - 0.00074 20.3 0.0 0.0011 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|386002280|ref|YP_005920579.1| - 0.0015 17.6 0.0 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|386002280|ref|YP_005920579.1| - 0.0039 16.2 0.0 0.0078 15.2 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase DUF633 PF04816.7 gi|386002280|ref|YP_005920579.1| - 0.013 14.8 0.1 0.067 12.5 0.0 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF633) Methyltransf_15 PF09445.5 gi|386002280|ref|YP_005920579.1| - 0.013 15.0 0.3 0.019 14.5 0.2 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Nol1_Nop2_Fmu PF01189.12 gi|386002280|ref|YP_005920579.1| - 0.031 13.6 0.0 0.043 13.2 0.0 1.1 1 0 0 1 1 1 0 NOL1/NOP2/sun family POTRA_2 PF08479.6 gi|386002280|ref|YP_005920579.1| - 0.046 13.3 0.1 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 POTRA domain, ShlB-type Methyltrans_SAM PF10672.4 gi|386002280|ref|YP_005920579.1| - 0.056 12.2 0.0 0.073 11.9 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase PCMT PF01135.14 gi|386002280|ref|YP_005920579.1| - 0.066 12.7 0.0 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FmrO PF07091.6 gi|386002280|ref|YP_005920579.1| - 0.09 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) rRNA_methylase PF06962.7 gi|386002280|ref|YP_005920579.1| - 0.12 12.0 0.1 4.4 6.9 0.0 2.4 2 0 0 2 2 2 0 Putative rRNA methylase Phi-29_GP3 PF05435.6 gi|386002281|ref|YP_005920580.1| - 0.00038 19.7 0.0 0.00041 19.6 0.0 1.1 1 0 0 1 1 1 1 Phi-29 DNA terminal protein GP3 TPR_11 PF13414.1 gi|386002282|ref|YP_005920581.1| - 8.3e-10 38.1 25.2 0.0002 20.9 0.7 6.7 3 1 4 7 7 7 4 TPR repeat TPR_12 PF13424.1 gi|386002282|ref|YP_005920581.1| - 2.4e-09 36.9 31.9 0.0026 17.6 1.0 7.0 5 1 2 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386002282|ref|YP_005920581.1| - 1.1e-05 25.9 39.0 0.2 12.3 1.9 7.5 5 3 2 7 7 7 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386002282|ref|YP_005920581.1| - 0.00012 21.6 15.6 0.51 10.2 0.0 7.7 7 1 0 7 7 7 1 Tetratricopeptide repeat SNAP PF14938.1 gi|386002282|ref|YP_005920581.1| - 0.0002 20.6 19.1 0.31 10.1 3.7 4.7 3 1 2 5 5 5 3 Soluble NSF attachment protein, SNAP TPR_1 PF00515.23 gi|386002282|ref|YP_005920581.1| - 0.00022 20.6 26.7 0.67 9.6 0.0 8.9 9 1 1 10 10 10 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|386002282|ref|YP_005920581.1| - 0.00098 18.9 2.5 0.00098 18.9 1.7 7.4 9 1 1 10 10 10 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386002282|ref|YP_005920581.1| - 0.035 13.8 20.7 21 5.1 0.1 8.3 8 2 0 8 8 8 0 Tetratricopeptide repeat BRO1 PF03097.13 gi|386002282|ref|YP_005920581.1| - 0.2 10.4 1.5 3.4 6.3 0.1 2.8 2 1 0 2 2 2 0 BRO1-like domain TauE PF01925.14 gi|386002283|ref|YP_005920582.1| - 1.1e-44 152.7 43.8 1.3e-44 152.4 30.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Peptidase_U32 PF01136.14 gi|386002284|ref|YP_005920583.1| - 7.1e-112 372.0 0.0 1.4e-79 266.2 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|386002284|ref|YP_005920583.1| - 9.2e-22 77.3 0.0 2.4e-21 76.0 0.0 1.8 1 0 0 1 1 1 1 Collagenase OrfB_Zn_ribbon PF07282.6 gi|386002285|ref|YP_005920584.1| - 0.009 15.6 1.0 0.014 15.0 0.7 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|386002285|ref|YP_005920584.1| - 0.17 11.5 2.6 0.28 10.9 1.8 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_alkylation PF08713.6 gi|386002286|ref|YP_005920585.1| - 6.5e-61 205.5 3.2 7.4e-61 205.3 2.2 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme YvbH_ext PF11724.3 gi|386002286|ref|YP_005920585.1| - 0.03 13.9 0.3 0.27 10.9 0.0 2.3 2 0 0 2 2 2 0 YvbH-like oligomerisation region PMSR PF01625.16 gi|386002287|ref|YP_005920586.1| - 4e-66 221.7 0.1 4.6e-66 221.5 0.1 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase PEGA PF08308.6 gi|386002289|ref|YP_005920588.1| - 0.0084 15.8 1.4 0.033 13.9 0.9 2.1 1 1 0 1 1 1 1 PEGA domain Rhodanese PF00581.15 gi|386002290|ref|YP_005920589.1| - 8.7e-19 67.9 0.0 8.2e-11 42.2 0.0 2.9 2 1 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|386002290|ref|YP_005920589.1| - 4.9e-14 52.4 1.3 4.9e-14 52.4 0.9 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily ABC_tran PF00005.22 gi|386002292|ref|YP_005920591.1| - 2.4e-22 79.6 0.7 1.1e-11 45.1 0.0 2.3 1 1 1 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|386002292|ref|YP_005920591.1| - 1.7e-09 38.1 0.8 2.7e-05 24.2 0.2 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|386002292|ref|YP_005920591.1| - 4.6e-06 25.9 0.0 0.0089 15.1 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|386002292|ref|YP_005920591.1| - 5.4e-05 22.5 2.4 0.0094 15.2 0.2 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|386002292|ref|YP_005920591.1| - 9.5e-05 22.8 0.2 0.00013 22.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|386002292|ref|YP_005920591.1| - 0.00015 21.1 0.1 0.00027 20.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|386002292|ref|YP_005920591.1| - 0.0005 19.7 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|386002292|ref|YP_005920591.1| - 0.00059 19.8 0.1 0.00087 19.3 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|386002292|ref|YP_005920591.1| - 0.0019 17.9 0.0 1.4 8.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|386002292|ref|YP_005920591.1| - 0.0026 17.4 0.0 0.0056 16.4 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|386002292|ref|YP_005920591.1| - 0.0026 17.4 0.2 0.032 13.8 0.0 2.1 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.1 gi|386002292|ref|YP_005920591.1| - 0.0053 16.6 0.0 0.0072 16.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|386002292|ref|YP_005920591.1| - 0.006 16.2 0.1 0.013 15.1 0.0 1.7 1 1 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|386002292|ref|YP_005920591.1| - 0.0074 16.4 0.9 0.052 13.6 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|386002292|ref|YP_005920591.1| - 0.0087 16.2 0.1 0.016 15.3 0.1 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|386002292|ref|YP_005920591.1| - 0.0089 15.9 0.1 0.022 14.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|386002292|ref|YP_005920591.1| - 0.011 14.4 0.1 1.8 7.0 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|386002292|ref|YP_005920591.1| - 0.011 14.6 0.0 0.021 13.6 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|386002292|ref|YP_005920591.1| - 0.019 15.8 0.2 0.027 15.2 0.2 1.4 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|386002292|ref|YP_005920591.1| - 0.028 14.1 0.0 0.038 13.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase SbcCD_C PF13558.1 gi|386002292|ref|YP_005920591.1| - 0.033 14.1 0.0 0.3 11.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|386002292|ref|YP_005920591.1| - 0.039 13.5 0.0 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|386002292|ref|YP_005920591.1| - 0.048 13.3 0.2 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 NTPase cobW PF02492.14 gi|386002292|ref|YP_005920591.1| - 0.053 12.9 0.1 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.1 gi|386002292|ref|YP_005920591.1| - 0.06 12.9 0.2 0.1 12.1 0.1 1.3 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|386002292|ref|YP_005920591.1| - 0.063 12.7 0.1 0.16 11.4 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|386002292|ref|YP_005920591.1| - 0.076 12.0 0.0 0.22 10.5 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_PrkA PF08298.6 gi|386002292|ref|YP_005920591.1| - 0.092 11.4 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain ATP_bind_1 PF03029.12 gi|386002292|ref|YP_005920591.1| - 0.093 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Rad17 PF03215.10 gi|386002292|ref|YP_005920591.1| - 0.095 11.3 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Mg_chelatase PF01078.16 gi|386002292|ref|YP_005920591.1| - 0.13 11.4 0.0 0.26 10.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Methyltransf_11 PF08241.7 gi|386002293|ref|YP_005920592.1| - 1.5e-10 41.4 0.0 2.1e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386002293|ref|YP_005920592.1| - 1.5e-07 31.3 0.0 2.7e-07 30.4 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386002293|ref|YP_005920592.1| - 3.4e-07 30.6 0.0 4.8e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386002293|ref|YP_005920592.1| - 1.7e-05 25.3 0.0 2.3e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386002293|ref|YP_005920592.1| - 0.00021 21.5 0.0 0.00029 21.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386002293|ref|YP_005920592.1| - 0.0003 20.7 0.0 0.00059 19.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386002293|ref|YP_005920592.1| - 0.00081 18.5 0.0 0.001 18.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_28 PF02636.12 gi|386002293|ref|YP_005920592.1| - 0.00094 18.6 0.0 0.001 18.5 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Peripla_BP_2 PF01497.13 gi|386002294|ref|YP_005920593.1| - 3.2e-19 69.0 0.0 7.9e-19 67.7 0.0 1.6 1 1 0 1 1 1 1 Periplasmic binding protein CobN-Mg_chel PF02514.11 gi|386002295|ref|YP_005920594.1| - 0 1098.2 0.0 0 1098.0 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF3479 PF11965.3 gi|386002295|ref|YP_005920594.1| - 5.2e-05 23.1 0.0 0.0001 22.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3479) Peripla_BP_2 PF01497.13 gi|386002296|ref|YP_005920595.1| - 8.6e-23 80.6 0.0 1.3e-22 80.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ABC_tran PF00005.22 gi|386002297|ref|YP_005920596.1| - 2e-31 109.0 0.0 5e-31 107.8 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|386002297|ref|YP_005920596.1| - 8.8e-12 45.5 0.2 1.5e-05 25.1 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|386002297|ref|YP_005920596.1| - 1.5e-07 30.8 0.2 0.0019 17.3 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|386002297|ref|YP_005920596.1| - 3.8e-06 27.0 0.9 0.00013 22.1 0.6 2.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|386002297|ref|YP_005920596.1| - 4.6e-05 22.7 0.5 0.0016 17.7 0.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|386002297|ref|YP_005920596.1| - 0.00013 21.9 0.2 0.00025 21.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|386002297|ref|YP_005920596.1| - 0.00021 20.7 0.1 0.00044 19.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|386002297|ref|YP_005920596.1| - 0.00027 21.3 0.0 0.00029 21.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|386002297|ref|YP_005920596.1| - 0.002 18.0 0.1 0.031 14.2 0.1 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|386002297|ref|YP_005920596.1| - 0.003 17.2 0.1 0.0063 16.2 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|386002297|ref|YP_005920596.1| - 0.004 17.3 0.2 0.042 14.0 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.4 gi|386002297|ref|YP_005920596.1| - 0.0042 15.7 0.5 1.1 7.8 0.1 3.0 2 2 0 2 2 2 1 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|386002297|ref|YP_005920596.1| - 0.0045 16.7 0.1 0.012 15.3 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain NB-ARC PF00931.17 gi|386002297|ref|YP_005920596.1| - 0.0048 15.7 0.0 0.0089 14.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_33 PF13671.1 gi|386002297|ref|YP_005920596.1| - 0.011 15.5 0.1 0.03 14.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|386002297|ref|YP_005920596.1| - 0.012 14.7 0.0 0.025 13.7 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|386002297|ref|YP_005920596.1| - 0.019 14.4 0.0 0.046 13.1 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain ArgK PF03308.11 gi|386002297|ref|YP_005920596.1| - 0.02 13.6 0.0 0.034 12.9 0.0 1.3 1 0 0 1 1 1 0 ArgK protein UPF0079 PF02367.12 gi|386002297|ref|YP_005920596.1| - 0.021 14.4 0.1 0.058 13.0 0.0 1.7 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|386002297|ref|YP_005920596.1| - 0.025 13.7 0.1 0.035 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|386002297|ref|YP_005920596.1| - 0.028 14.1 0.1 0.45 10.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) G-alpha PF00503.15 gi|386002297|ref|YP_005920596.1| - 0.039 12.6 0.0 0.073 11.7 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit NACHT PF05729.7 gi|386002297|ref|YP_005920596.1| - 0.05 13.2 0.4 0.12 12.0 0.3 1.9 1 1 0 1 1 1 0 NACHT domain SRP54 PF00448.17 gi|386002297|ref|YP_005920596.1| - 0.058 12.8 0.1 0.12 11.8 0.0 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|386002297|ref|YP_005920596.1| - 0.072 12.1 0.0 0.13 11.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|386002297|ref|YP_005920596.1| - 0.074 12.9 0.1 0.42 10.5 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|386002297|ref|YP_005920596.1| - 0.082 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|386002297|ref|YP_005920596.1| - 0.089 12.2 0.1 0.19 11.1 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|386002297|ref|YP_005920596.1| - 0.1 12.3 0.7 0.26 10.9 0.1 1.9 2 0 0 2 2 2 0 NTPase PduV-EutP PF10662.4 gi|386002297|ref|YP_005920596.1| - 0.14 11.6 0.6 1.1 8.7 0.0 2.3 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation FecCD PF01032.13 gi|386002298|ref|YP_005920597.1| - 3.8e-97 324.8 40.0 4.7e-97 324.5 27.7 1.0 1 0 0 1 1 1 1 FecCD transport family BPD_transp_2 PF02653.11 gi|386002298|ref|YP_005920597.1| - 0.00011 21.3 31.2 0.00011 21.3 21.6 2.8 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component ABC-3 PF00950.12 gi|386002298|ref|YP_005920597.1| - 0.088 12.0 30.4 0.0042 16.4 17.3 1.6 2 0 0 2 2 2 0 ABC 3 transport family VWA_2 PF13519.1 gi|386002299|ref|YP_005920598.1| - 3.9e-20 72.6 0.0 1.1e-19 71.1 0.0 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|386002299|ref|YP_005920598.1| - 1.4e-11 44.4 0.0 2.3e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|386002299|ref|YP_005920598.1| - 1.3e-10 40.8 0.2 1.8e-07 30.5 0.0 2.7 2 1 1 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|386002299|ref|YP_005920598.1| - 1.3e-09 37.9 0.0 8.7e-06 25.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|386002299|ref|YP_005920598.1| - 0.00013 20.8 3.7 0.0039 16.0 0.1 3.7 4 0 0 4 4 4 1 MCM2/3/5 family VWA_3 PF13768.1 gi|386002299|ref|YP_005920598.1| - 0.00065 19.4 0.0 0.0016 18.1 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain Sigma54_activat PF00158.21 gi|386002299|ref|YP_005920598.1| - 0.0041 16.6 0.0 0.43 10.0 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|386002299|ref|YP_005920598.1| - 0.0043 17.0 0.0 0.01 15.8 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain Mg_chelatase_2 PF13335.1 gi|386002299|ref|YP_005920598.1| - 0.013 15.9 0.3 0.035 14.4 0.2 1.8 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|386002299|ref|YP_005920598.1| - 0.037 14.2 0.0 0.29 11.3 0.0 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|386002299|ref|YP_005920598.1| - 0.039 14.0 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.6 gi|386002299|ref|YP_005920598.1| - 0.14 11.8 0.0 9.6 5.8 0.0 2.8 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) DUF3408 PF11888.3 gi|386002299|ref|YP_005920598.1| - 5.2 7.0 9.0 9.2 6.1 6.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3408) ABC_tran PF00005.22 gi|386002300|ref|YP_005920599.1| - 1.3e-32 112.9 0.0 2e-32 112.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386002300|ref|YP_005920599.1| - 5.4e-16 59.3 0.1 1.3e-11 45.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|386002300|ref|YP_005920599.1| - 0.00065 19.2 1.7 0.79 9.1 0.4 2.4 1 1 1 2 2 2 2 AAA-like domain AAA_23 PF13476.1 gi|386002300|ref|YP_005920599.1| - 0.0021 18.3 1.8 0.0057 16.9 1.3 1.7 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|386002300|ref|YP_005920599.1| - 0.0023 17.7 0.0 0.0062 16.4 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|386002300|ref|YP_005920599.1| - 0.0025 17.1 0.1 0.012 14.8 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|386002300|ref|YP_005920599.1| - 0.013 15.7 0.5 0.083 13.0 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|386002300|ref|YP_005920599.1| - 0.017 14.6 0.1 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|386002300|ref|YP_005920599.1| - 0.026 14.5 0.1 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|386002300|ref|YP_005920599.1| - 0.034 13.5 0.1 0.061 12.7 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|386002300|ref|YP_005920599.1| - 0.034 14.2 1.7 0.18 11.9 1.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|386002300|ref|YP_005920599.1| - 0.037 13.9 1.3 0.15 11.9 0.9 1.9 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|386002300|ref|YP_005920599.1| - 0.039 12.6 0.0 0.044 12.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.1 gi|386002300|ref|YP_005920599.1| - 0.039 13.5 0.4 0.1 12.1 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|386002300|ref|YP_005920599.1| - 0.098 11.0 0.2 0.39 9.1 0.1 1.9 1 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|386002300|ref|YP_005920599.1| - 0.11 11.9 3.9 4.5 6.6 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|386002300|ref|YP_005920599.1| - 0.21 12.4 1.0 0.69 10.7 0.5 2.0 1 1 0 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|386002301|ref|YP_005920600.1| - 4.9e-22 78.1 21.3 4.9e-22 78.1 14.8 1.9 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|386002301|ref|YP_005920600.1| - 3.7e-08 32.7 31.3 3.7e-08 32.7 21.7 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein EcsB PF05975.7 gi|386002301|ref|YP_005920600.1| - 0.0036 15.8 5.9 0.0036 15.8 4.1 2.0 2 1 0 2 2 2 1 Bacterial ABC transporter protein EcsB Peripla_BP_2 PF01497.13 gi|386002302|ref|YP_005920601.1| - 2.8e-20 72.4 0.5 1.5e-18 66.8 0.1 2.0 2 0 0 2 2 2 2 Periplasmic binding protein CheY-binding PF09078.6 gi|386002302|ref|YP_005920601.1| - 0.002 18.1 0.3 0.0041 17.0 0.2 1.5 1 0 0 1 1 1 1 CheY binding PQ-loop PF04193.9 gi|386002303|ref|YP_005920602.1| - 6e-11 41.7 1.3 8.6e-11 41.2 0.0 1.7 2 0 0 2 2 2 1 PQ loop repeat MtN3_slv PF03083.11 gi|386002303|ref|YP_005920602.1| - 3.6e-10 39.5 1.2 4e-10 39.4 0.8 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PsiE PF06146.7 gi|386002304|ref|YP_005920603.1| - 4.9e-13 49.1 9.8 1.1e-12 47.9 6.8 1.6 1 0 0 1 1 1 1 Phosphate-starvation-inducible E Sigma_reg_N PF13800.1 gi|386002304|ref|YP_005920603.1| - 3.7 7.6 10.6 0.39 10.7 0.6 2.7 2 1 0 3 3 3 0 Sigma factor regulator N-terminal DUF3040 PF11239.3 gi|386002306|ref|YP_005920605.1| - 0.11 12.4 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) PDH PF02153.12 gi|386002307|ref|YP_005920606.1| - 2.3e-45 154.5 0.0 2.6e-45 154.3 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|386002307|ref|YP_005920606.1| - 2e-06 27.0 0.0 3.6e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|386002307|ref|YP_005920606.1| - 2.7e-05 24.0 0.0 4.4e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|386002307|ref|YP_005920606.1| - 4.5e-05 23.8 0.0 9.3e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|386002307|ref|YP_005920606.1| - 0.012 15.0 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|386002307|ref|YP_005920606.1| - 0.029 14.0 2.1 0.35 10.5 1.5 2.1 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|386002307|ref|YP_005920606.1| - 0.029 13.7 0.0 0.069 12.5 0.0 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.4 gi|386002307|ref|YP_005920606.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Rossmann-like domain Shikimate_dh_N PF08501.6 gi|386002308|ref|YP_005920607.1| - 2e-25 88.6 0.0 3.7e-25 87.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|386002308|ref|YP_005920607.1| - 1.6e-15 57.4 0.0 2.4e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|386002308|ref|YP_005920607.1| - 1.7e-05 25.1 0.3 4.9e-05 23.6 0.2 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|386002308|ref|YP_005920607.1| - 0.00037 19.6 0.1 0.00061 18.9 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|386002308|ref|YP_005920607.1| - 0.0014 17.9 0.1 0.0029 17.0 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|386002308|ref|YP_005920607.1| - 0.003 17.4 0.1 0.0051 16.6 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Saccharop_dh PF03435.13 gi|386002308|ref|YP_005920607.1| - 0.0072 15.3 0.1 0.0085 15.1 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase ThiF PF00899.16 gi|386002308|ref|YP_005920607.1| - 0.0076 16.0 0.2 0.055 13.2 0.1 2.1 2 0 0 2 2 2 1 ThiF family GARS_N PF02844.10 gi|386002308|ref|YP_005920607.1| - 0.011 16.1 0.5 0.2 12.1 0.1 2.3 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain THF_DHG_CYH_C PF02882.14 gi|386002308|ref|YP_005920607.1| - 0.022 13.8 0.0 0.3 10.1 0.0 2.1 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_7 PF13241.1 gi|386002308|ref|YP_005920607.1| - 0.027 14.7 0.1 0.044 14.0 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Glycos_transf_3 PF00591.16 gi|386002309|ref|YP_005920608.1| - 4.3e-14 52.5 0.1 1.6e-13 50.6 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.8 gi|386002309|ref|YP_005920608.1| - 1.8e-10 40.0 0.0 4.4e-10 38.8 0.0 1.6 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.12 gi|386002309|ref|YP_005920608.1| - 2.2e-07 30.3 0.3 5.9e-07 28.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2254 PF10011.4 gi|386002309|ref|YP_005920608.1| - 0.0033 15.9 0.0 0.0049 15.3 0.0 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Fer4_15 PF13459.1 gi|386002310|ref|YP_005920609.1| - 1.8e-07 31.6 0.4 1.8e-07 31.6 0.3 2.6 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_7 PF12838.2 gi|386002310|ref|YP_005920609.1| - 1.2e-06 28.7 1.7 0.075 13.4 0.3 3.1 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386002310|ref|YP_005920609.1| - 3e-05 23.4 16.2 0.0019 17.7 0.8 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|386002310|ref|YP_005920609.1| - 0.00014 22.1 2.3 0.00014 22.1 1.6 2.3 2 1 0 2 2 1 1 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|386002310|ref|YP_005920609.1| - 0.00061 19.5 6.6 0.02 14.6 4.6 2.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain zf-FCS PF06467.9 gi|386002310|ref|YP_005920609.1| - 0.003 17.1 0.1 0.17 11.5 0.0 2.4 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif Fer4_2 PF12797.2 gi|386002310|ref|YP_005920609.1| - 0.0034 17.1 1.2 0.0034 17.1 0.8 3.6 4 0 0 4 4 4 1 4Fe-4S binding domain zf-C2HC_2 PF13913.1 gi|386002310|ref|YP_005920609.1| - 0.013 15.1 0.4 0.033 13.8 0.3 1.8 1 0 0 1 1 1 0 zinc-finger of a C2HC-type FYVE PF01363.16 gi|386002310|ref|YP_005920609.1| - 0.015 15.1 0.3 0.13 12.1 0.0 2.2 2 0 0 2 2 2 0 FYVE zinc finger Fer4_21 PF14697.1 gi|386002310|ref|YP_005920609.1| - 0.016 15.0 6.2 0.02 14.7 0.1 3.0 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386002310|ref|YP_005920609.1| - 0.041 14.1 6.3 3.3 8.0 0.1 3.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002310|ref|YP_005920609.1| - 0.075 12.9 1.3 0.075 12.9 0.9 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain zf-C2H2 PF00096.21 gi|386002310|ref|YP_005920609.1| - 0.41 11.0 0.1 0.41 11.0 0.1 1.9 2 0 0 2 2 1 0 Zinc finger, C2H2 type Fer4_8 PF13183.1 gi|386002310|ref|YP_005920609.1| - 0.52 10.3 8.1 22 5.1 5.7 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386002310|ref|YP_005920609.1| - 8.7 6.7 8.4 31 5.0 1.1 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|386002311|ref|YP_005920610.1| - 2e-16 59.6 10.2 2e-16 59.6 7.1 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002311|ref|YP_005920610.1| - 5.4e-12 45.0 34.7 1.9e-05 24.2 1.4 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.22 gi|386002311|ref|YP_005920610.1| - 5.8e-11 41.5 37.9 6e-07 28.8 2.5 5.3 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386002311|ref|YP_005920610.1| - 6.4e-11 42.4 32.5 3.8e-05 23.9 7.5 3.2 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386002311|ref|YP_005920610.1| - 2.9e-08 33.1 12.6 6.6e-05 22.5 1.7 4.4 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386002311|ref|YP_005920610.1| - 4e-08 32.9 28.5 4.6e-05 23.1 7.6 3.2 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386002311|ref|YP_005920610.1| - 1e-07 32.0 29.1 6.9e-05 23.0 6.6 3.0 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386002311|ref|YP_005920610.1| - 3.4e-07 30.8 20.0 0.0073 17.0 2.7 4.3 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|386002311|ref|YP_005920610.1| - 7.8e-07 29.2 47.8 0.0022 18.4 4.1 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|386002311|ref|YP_005920610.1| - 1.1e-06 28.4 30.9 0.0015 18.7 2.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|386002311|ref|YP_005920610.1| - 0.00032 20.9 24.6 0.0085 16.4 0.6 4.1 2 1 3 5 5 5 4 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002311|ref|YP_005920610.1| - 0.00042 20.2 28.8 0.023 14.7 7.4 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386002311|ref|YP_005920610.1| - 0.00043 20.0 19.4 0.0038 17.0 7.1 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386002311|ref|YP_005920610.1| - 3.7 8.0 26.7 45 4.5 9.0 4.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.17 gi|386002312|ref|YP_005920611.1| - 2.2e-82 277.1 0.0 2.7e-82 276.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|386002312|ref|YP_005920611.1| - 1.2e-30 105.6 0.0 2e-30 104.8 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|386002312|ref|YP_005920611.1| - 3.1e-11 42.9 0.1 6.3e-11 41.9 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.1 gi|386002313|ref|YP_005920612.1| - 7.2e-22 77.1 15.5 1.6e-20 72.7 7.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386002313|ref|YP_005920612.1| - 2.2e-17 63.1 61.3 1.6e-07 31.5 7.5 3.0 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002313|ref|YP_005920612.1| - 2.8e-13 49.0 31.6 7.2e-05 22.4 0.9 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|386002313|ref|YP_005920612.1| - 1.7e-11 44.2 25.9 8e-06 26.0 6.8 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386002313|ref|YP_005920612.1| - 1.5e-10 40.1 39.1 0.00014 21.3 1.6 5.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386002313|ref|YP_005920612.1| - 3.9e-10 39.3 29.3 0.00019 21.1 7.2 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386002313|ref|YP_005920612.1| - 2.1e-08 34.7 20.8 0.033 14.9 1.1 4.3 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|386002313|ref|YP_005920612.1| - 1.1e-07 31.3 37.5 0.00032 20.4 1.6 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|386002313|ref|YP_005920612.1| - 9.2e-07 28.7 37.1 0.016 15.4 2.5 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|386002313|ref|YP_005920612.1| - 3.6e-05 23.6 25.0 0.0017 18.3 5.1 3.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386002313|ref|YP_005920612.1| - 0.00028 21.2 45.1 0.0026 18.2 3.9 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|386002313|ref|YP_005920612.1| - 0.0023 17.7 31.6 0.22 11.4 8.1 3.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386002313|ref|YP_005920612.1| - 0.0088 16.3 28.9 2.3 8.6 1.2 4.1 1 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|386002313|ref|YP_005920612.1| - 0.1 12.2 21.3 0.18 11.4 0.2 3.4 1 1 2 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF4033 PF13225.1 gi|386002313|ref|YP_005920612.1| - 2.9 7.5 8.6 4.8 6.8 0.2 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4033) Prismane PF03063.15 gi|386002314|ref|YP_005920613.1| - 6.7e-181 602.1 0.1 7.6e-181 601.9 0.1 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family MFS_1 PF07690.11 gi|386002316|ref|YP_005920615.1| - 7.1e-18 64.4 14.4 8.3e-18 64.2 10.0 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily ATG22 PF11700.3 gi|386002316|ref|YP_005920615.1| - 3.3e-05 22.5 10.2 3.6e-05 22.4 7.0 1.1 1 0 0 1 1 1 1 Vacuole effluxer Atg22 like ADP_ribosyl_GH PF03747.9 gi|386002317|ref|YP_005920616.1| - 3.3e-60 204.3 5.4 3.8e-60 204.1 3.8 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase DUF531 PF04407.7 gi|386002317|ref|YP_005920616.1| - 0.035 13.9 0.1 0.096 12.5 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF531) Semialdhyde_dh PF01118.19 gi|386002318|ref|YP_005920617.1| - 4e-32 111.0 0.0 6.6e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|386002318|ref|YP_005920617.1| - 5.5e-24 85.0 0.0 7.2e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.12 gi|386002318|ref|YP_005920617.1| - 0.00035 20.9 0.0 0.00086 19.6 0.0 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|386002318|ref|YP_005920617.1| - 0.00054 20.4 0.0 0.0012 19.3 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CBS PF00571.23 gi|386002319|ref|YP_005920618.1| - 2.7e-32 110.2 5.1 6.5e-18 64.2 0.2 2.4 3 0 0 3 3 3 2 CBS domain Aromatic_hydrox PF11723.3 gi|386002319|ref|YP_005920618.1| - 0.062 12.5 0.0 0.068 12.4 0.0 1.1 1 0 0 1 1 1 0 Homotrimeric ring hydroxylase ArgJ PF01960.13 gi|386002320|ref|YP_005920619.1| - 5.8e-132 439.7 1.5 7e-132 439.4 1.0 1.0 1 0 0 1 1 1 1 ArgJ family Lyase_1 PF00206.15 gi|386002321|ref|YP_005920620.1| - 1.4e-61 208.4 0.0 2.4e-61 207.6 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|386002321|ref|YP_005920620.1| - 5.8e-13 48.7 1.0 3.3e-12 46.2 0.0 2.7 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Arch_ATPase PF01637.13 gi|386002323|ref|YP_005920622.1| - 0.00031 20.5 0.0 0.02 14.6 0.0 2.4 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|386002323|ref|YP_005920622.1| - 0.002 18.1 0.0 0.0078 16.2 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|386002323|ref|YP_005920622.1| - 0.0067 15.6 0.0 0.025 13.8 0.0 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|386002323|ref|YP_005920622.1| - 0.015 14.8 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|386002323|ref|YP_005920622.1| - 0.038 14.8 0.5 0.2 12.5 0.3 2.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|386002323|ref|YP_005920622.1| - 0.038 13.6 0.0 0.54 9.8 0.0 2.6 2 1 0 2 2 2 0 NACHT domain Adeno_IVa2 PF02456.10 gi|386002323|ref|YP_005920622.1| - 0.053 12.1 0.0 0.09 11.4 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein RNA12 PF10443.4 gi|386002323|ref|YP_005920622.1| - 0.06 11.8 0.0 0.11 10.9 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein RRM_1 PF00076.17 gi|386002323|ref|YP_005920622.1| - 0.087 12.4 0.0 2.7 7.7 0.0 2.5 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AAA_33 PF13671.1 gi|386002323|ref|YP_005920622.1| - 0.12 12.2 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|386002323|ref|YP_005920622.1| - 0.13 12.1 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|386002324|ref|YP_005920623.1| - 8.9e-07 28.4 0.0 1.7e-06 27.6 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|386002324|ref|YP_005920623.1| - 0.0024 16.9 0.0 0.004 16.2 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|386002324|ref|YP_005920623.1| - 0.024 13.9 0.0 0.15 11.4 0.0 2.0 2 0 0 2 2 2 0 YhjQ protein AAA_31 PF13614.1 gi|386002324|ref|YP_005920623.1| - 0.026 14.4 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain MipZ PF09140.6 gi|386002324|ref|YP_005920623.1| - 0.056 12.5 0.0 0.09 11.8 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ ArgK PF03308.11 gi|386002324|ref|YP_005920623.1| - 0.13 11.0 0.1 0.2 10.3 0.1 1.2 1 0 0 1 1 1 0 ArgK protein VirC1 PF07015.6 gi|386002324|ref|YP_005920623.1| - 0.14 11.1 0.0 0.27 10.2 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein Peptidase_C25 PF01364.13 gi|386002326|ref|YP_005920625.1| - 5.6e-12 45.3 0.0 1.9e-08 33.6 0.0 2.1 2 0 0 2 2 2 2 Peptidase family C25 CarboxypepD_reg PF13620.1 gi|386002326|ref|YP_005920625.1| - 3.9e-11 42.8 0.3 9.8e-11 41.5 0.2 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|386002326|ref|YP_005920625.1| - 1.1e-06 28.5 0.0 2.3e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) MG1 PF11974.3 gi|386002326|ref|YP_005920625.1| - 0.026 15.0 0.0 0.074 13.6 0.0 1.7 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain PolC_DP2 PF03833.8 gi|386002327|ref|YP_005920626.1| - 0 1132.9 0.0 0 1125.9 0.0 2.9 2 1 0 2 2 2 1 DNA polymerase II large subunit DP2 TerY-C PF15616.1 gi|386002327|ref|YP_005920626.1| - 0.00051 19.9 9.8 0.0013 18.6 5.6 2.2 2 0 0 2 2 2 1 TerY-C metal binding domain DUF2072 PF09845.4 gi|386002327|ref|YP_005920626.1| - 0.012 15.4 7.7 0.013 15.4 0.1 2.8 2 1 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) HypA PF01155.14 gi|386002327|ref|YP_005920626.1| - 5.1 6.8 11.7 0.27 10.9 0.1 2.8 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF296 PF03479.10 gi|386002328|ref|YP_005920627.1| - 3e-25 88.1 0.0 3.5e-25 87.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF296) Asn_synthase PF00733.16 gi|386002329|ref|YP_005920628.1| - 9.8e-41 139.9 1.5 8.1e-40 136.9 1.1 1.9 1 1 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|386002329|ref|YP_005920628.1| - 0.0013 17.7 0.1 0.0019 17.1 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|386002329|ref|YP_005920628.1| - 0.048 12.1 0.2 0.07 11.6 0.2 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Peripla_BP_2 PF01497.13 gi|386002330|ref|YP_005920629.1| - 5.5e-28 97.7 0.0 7e-28 97.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein UPF0047 PF01894.12 gi|386002332|ref|YP_005920631.1| - 1.5e-33 115.0 0.0 1.9e-33 114.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 ChuX_HutX PF06228.8 gi|386002332|ref|YP_005920631.1| - 0.1 11.9 0.0 0.67 9.3 0.0 2.0 1 1 1 2 2 2 0 Haem utilisation ChuX/HutX Gate PF07670.9 gi|386002333|ref|YP_005920632.1| - 6.9e-09 35.5 22.3 1e-05 25.4 0.4 3.7 1 1 2 3 3 3 2 Nucleoside recognition RhodobacterPufX PF11511.3 gi|386002333|ref|YP_005920632.1| - 0.063 12.6 0.1 0.19 11.1 0.1 1.8 1 0 0 1 1 1 0 Intrinsic membrane protein PufX Alpha-amylase PF00128.19 gi|386002334|ref|YP_005920633.1| - 5.9e-25 88.3 0.0 5.4e-18 65.4 0.0 2.8 1 1 1 2 2 2 2 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.13 gi|386002334|ref|YP_005920633.1| - 0.0012 18.8 0.0 0.0035 17.4 0.0 1.7 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain PPC PF04151.10 gi|386002336|ref|YP_005920635.1| - 0.38 11.7 3.6 30 5.6 1.3 2.4 2 0 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain CarboxypepD_reg PF13620.1 gi|386002338|ref|YP_005920637.1| - 0.00028 20.8 0.0 0.00075 19.5 0.0 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|386002338|ref|YP_005920637.1| - 0.0052 16.5 0.0 0.013 15.2 0.0 1.7 2 0 0 2 2 2 1 Cna protein B-type domain VWA_2 PF13519.1 gi|386002339|ref|YP_005920638.1| - 1.2e-13 51.5 0.0 1.4e-13 51.3 0.0 1.0 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|386002339|ref|YP_005920638.1| - 1.2e-07 31.6 0.1 1.5e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain Ku_N PF03731.10 gi|386002339|ref|YP_005920638.1| - 0.02 14.3 0.1 0.071 12.5 0.1 1.9 1 1 0 1 1 1 0 Ku70/Ku80 N-terminal alpha/beta domain VWA_CoxE PF05762.9 gi|386002339|ref|YP_005920638.1| - 0.029 13.5 0.0 0.045 12.8 0.0 1.4 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein DUF772 PF05598.6 gi|386002340|ref|YP_005920639.1| - 2.3e-21 75.4 0.1 5.2e-21 74.3 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|386002340|ref|YP_005920639.1| - 4.3e-12 46.0 0.2 8e-12 45.1 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|386002340|ref|YP_005920639.1| - 1.4e-05 24.7 0.0 3.3e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease VWA_2 PF13519.1 gi|386002341|ref|YP_005920640.1| - 1.1e-12 48.4 0.0 1.2e-09 38.5 0.0 2.2 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_2 PF13519.1 gi|386002342|ref|YP_005920641.1| - 6.8e-26 91.3 0.0 6.2e-12 45.9 0.0 2.5 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA PF00092.23 gi|386002342|ref|YP_005920641.1| - 2.7e-14 53.2 0.2 3e-07 30.3 0.0 2.4 2 0 0 2 2 2 2 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|386002342|ref|YP_005920641.1| - 7.4e-09 35.7 0.0 3.2e-05 23.8 0.0 2.4 2 0 0 2 2 2 2 vWA found in TerF C terminus VWA_3 PF13768.1 gi|386002342|ref|YP_005920641.1| - 3.9e-05 23.3 0.0 0.13 11.9 0.0 2.5 2 1 0 2 2 2 2 von Willebrand factor type A domain DUF11 PF01345.13 gi|386002342|ref|YP_005920641.1| - 0.00069 19.6 34.8 0.23 11.5 0.4 5.3 5 0 0 5 5 5 4 Domain of unknown function DUF11 GM_CSF PF01109.12 gi|386002342|ref|YP_005920641.1| - 0.018 14.9 0.0 0.055 13.4 0.0 1.7 2 0 0 2 2 2 0 Granulocyte-macrophage colony-stimulating factor Branch_AA_trans PF05525.8 gi|386002342|ref|YP_005920641.1| - 0.15 10.6 2.1 24 3.3 0.0 3.2 3 0 0 3 3 3 0 Branched-chain amino acid transport protein VWA_CoxE PF05762.9 gi|386002342|ref|YP_005920641.1| - 0.17 11.0 1.0 0.73 8.9 0.0 2.1 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein DUF4402 PF14352.1 gi|386002342|ref|YP_005920641.1| - 0.36 11.3 24.7 2.3 8.7 0.7 4.7 4 0 0 4 4 4 0 Domain of unknown function (DUF4402) Glt_symporter PF03616.9 gi|386002342|ref|YP_005920641.1| - 0.96 7.8 9.9 15 3.9 0.0 3.9 4 0 0 4 4 4 0 Sodium/glutamate symporter Invasin_D3 PF09134.5 gi|386002342|ref|YP_005920641.1| - 1.9 8.4 8.1 61 3.5 0.1 4.0 3 0 0 3 3 3 0 Invasin, domain 3 RNase_HII PF01351.13 gi|386002343|ref|YP_005920642.1| - 2.9e-42 144.5 0.2 3.3e-42 144.3 0.2 1.0 1 0 0 1 1 1 1 Ribonuclease HII DUF4557 PF15101.1 gi|386002343|ref|YP_005920642.1| - 0.016 15.0 0.1 0.024 14.4 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4557) DUF4460 PF14687.1 gi|386002343|ref|YP_005920642.1| - 0.14 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4460) Aminotran_5 PF00266.14 gi|386002344|ref|YP_005920643.1| - 1.9e-40 138.7 0.0 2.3e-40 138.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|386002344|ref|YP_005920643.1| - 0.00073 18.7 0.0 0.0025 17.0 0.0 1.7 3 0 0 3 3 3 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|386002344|ref|YP_005920643.1| - 0.0052 15.8 0.5 0.017 14.1 0.3 1.8 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family FixG_C PF11614.3 gi|386002345|ref|YP_005920644.1| - 0.091 12.8 0.2 1.3 9.1 0.0 2.2 2 0 0 2 2 2 0 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF4131 PF13567.1 gi|386002347|ref|YP_005920646.1| - 0.011 15.1 5.7 0.28 10.5 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF2127 PF09900.4 gi|386002347|ref|YP_005920646.1| - 0.011 15.7 1.1 0.13 12.2 0.0 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2127) Tubulin PF00091.20 gi|386002348|ref|YP_005920647.1| - 7.9e-08 32.3 0.1 2.2e-06 27.6 0.0 2.5 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain DUF523 PF04463.7 gi|386002350|ref|YP_005920649.1| - 8.7e-38 129.3 0.0 1.6e-37 128.4 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|386002350|ref|YP_005920649.1| - 1.7e-32 111.7 0.0 2.5e-32 111.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) LpxK PF02606.9 gi|386002351|ref|YP_005920650.1| - 0.0013 17.7 0.5 0.0046 15.9 0.3 1.7 1 1 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase cobW PF02492.14 gi|386002351|ref|YP_005920650.1| - 0.0074 15.7 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AA_kinase PF00696.23 gi|386002352|ref|YP_005920651.1| - 2.1e-20 73.2 0.0 2.5e-20 73.0 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family SNF PF00209.13 gi|386002353|ref|YP_005920652.1| - 1.1e-60 205.5 25.9 4.3e-32 111.2 4.4 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family BiPBP_C PF06832.7 gi|386002353|ref|YP_005920652.1| - 0.028 14.3 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family IBR PF01485.16 gi|386002354|ref|YP_005920653.1| - 5.4 6.9 9.8 69 3.4 6.8 2.5 1 1 0 1 1 1 0 IBR domain HHH PF00633.18 gi|386002355|ref|YP_005920654.1| - 2.1e-05 23.9 0.3 5.3e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|386002355|ref|YP_005920654.1| - 0.00011 22.2 4.3 0.0002 21.4 3.0 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HhH-GPD PF00730.20 gi|386002355|ref|YP_005920654.1| - 0.003 17.8 0.0 0.0037 17.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|386002355|ref|YP_005920654.1| - 0.12 12.6 0.2 0.41 10.8 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain HhH-GPD PF00730.20 gi|386002356|ref|YP_005920655.1| - 1.1e-09 38.5 0.1 1.7e-09 37.8 0.1 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein DUF4010 PF13194.1 gi|386002357|ref|YP_005920656.1| - 3.2e-63 212.8 22.0 3.2e-63 212.8 15.3 2.8 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|386002357|ref|YP_005920656.1| - 5.5e-07 29.5 9.2 5.5e-07 29.5 6.4 2.9 3 0 0 3 3 3 1 MgtC family DUF543 PF04418.7 gi|386002357|ref|YP_005920656.1| - 0.34 10.8 2.7 90 3.1 0.0 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF543) DUF2929 PF11151.3 gi|386002357|ref|YP_005920656.1| - 5.6 7.1 10.7 0.91 9.6 0.3 4.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2929) CxxCxxCC PF03692.10 gi|386002359|ref|YP_005920658.1| - 0.00037 20.9 1.3 0.00045 20.6 0.9 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain MSSP PF03940.8 gi|386002359|ref|YP_005920658.1| - 3.7 7.0 10.6 4.1 6.8 2.0 2.4 2 1 0 2 2 2 0 Male specific sperm protein NAD_kinase PF01513.16 gi|386002360|ref|YP_005920659.1| - 1.1e-54 185.1 0.1 1.2e-54 184.9 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|386002360|ref|YP_005920659.1| - 0.037 13.4 0.0 0.059 12.7 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Inositol_P PF00459.20 gi|386002361|ref|YP_005920660.1| - 1.5e-32 113.0 0.0 1.9e-32 112.6 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|386002361|ref|YP_005920660.1| - 4.9e-05 22.3 0.0 0.00011 21.2 0.0 1.5 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase SSF PF00474.12 gi|386002362|ref|YP_005920661.1| - 3.3e-59 200.5 30.1 4.4e-59 200.1 20.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family ExoD PF06055.7 gi|386002363|ref|YP_005920662.1| - 0.028 13.5 0.5 0.035 13.2 0.3 1.3 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD TaqI_C PF12950.2 gi|386002364|ref|YP_005920663.1| - 1.6e-18 66.5 0.0 2.9e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Eco57I PF07669.6 gi|386002364|ref|YP_005920663.1| - 4.4e-14 52.7 0.0 1.3e-13 51.2 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_26 PF13659.1 gi|386002364|ref|YP_005920663.1| - 1.3e-12 47.8 0.0 6.1e-12 45.5 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|386002364|ref|YP_005920663.1| - 3.3e-08 32.9 0.0 1.2e-06 27.8 0.0 2.3 2 0 0 2 2 2 1 N-6 DNA Methylase Acetyltransf_10 PF13673.1 gi|386002365|ref|YP_005920664.1| - 8.4e-11 42.0 0.0 1e-10 41.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|386002365|ref|YP_005920664.1| - 2.6e-10 40.1 0.0 4.9e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|386002365|ref|YP_005920664.1| - 1.5e-05 25.0 0.0 2.3e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386002365|ref|YP_005920664.1| - 8e-05 22.3 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|386002365|ref|YP_005920664.1| - 0.00017 21.4 0.0 0.006 16.4 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|386002365|ref|YP_005920664.1| - 0.00089 18.9 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_4 PF13420.1 gi|386002365|ref|YP_005920664.1| - 0.11 12.4 0.0 0.31 10.9 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Beta-lactamase PF00144.19 gi|386002366|ref|YP_005920665.1| - 9.5e-45 153.0 0.0 1.4e-44 152.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.1 gi|386002366|ref|YP_005920665.1| - 0.0067 15.8 0.0 0.44 9.9 0.0 2.4 2 0 0 2 2 2 2 Beta-lactamase enzyme family NTP_transf_2 PF01909.18 gi|386002368|ref|YP_005920667.1| - 3.7e-10 39.9 0.1 5.4e-10 39.4 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF104 PF01954.11 gi|386002369|ref|YP_005920668.1| - 1e-13 51.1 0.4 1.2e-13 50.8 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 TOBE_3 PF12857.2 gi|386002369|ref|YP_005920668.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 TOBE-like domain PIN PF01850.16 gi|386002370|ref|YP_005920669.1| - 6.5e-14 52.3 0.3 1.4e-13 51.2 0.2 1.5 1 1 0 1 1 1 1 PIN domain YokU PF14122.1 gi|386002371|ref|YP_005920670.1| - 0.001 18.7 0.1 0.0014 18.2 0.1 1.2 1 0 0 1 1 1 1 YokU-like protein DUF4258 PF14076.1 gi|386002372|ref|YP_005920671.1| - 5e-14 52.0 0.0 5.7e-14 51.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) DUF3356 PF11836.3 gi|386002372|ref|YP_005920671.1| - 0.12 12.1 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3356) DDE_Tnp_1_6 PF13751.1 gi|386002375|ref|YP_005920674.1| - 0.093 12.7 1.4 0.11 12.4 1.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain PIN PF01850.16 gi|386002376|ref|YP_005920675.1| - 2.3e-12 47.3 1.5 2.6e-12 47.1 1.0 1.0 1 0 0 1 1 1 1 PIN domain NTP_transf_2 PF01909.18 gi|386002377|ref|YP_005920676.1| - 5.8e-10 39.3 0.2 6.9e-10 39.1 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF4258 PF14076.1 gi|386002378|ref|YP_005920677.1| - 1.1e-09 38.2 0.3 1.5e-09 37.7 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4258) NTP_transf_2 PF01909.18 gi|386002380|ref|YP_005920679.1| - 0.00092 19.4 0.1 0.0016 18.6 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Acylphosphatase PF00708.13 gi|386002381|ref|YP_005920680.1| - 1.9e-11 43.8 0.1 3e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Acylphosphatase DUF2095 PF09868.4 gi|386002381|ref|YP_005920680.1| - 0.037 13.8 0.3 0.085 12.6 0.2 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2095) NTP_transf_2 PF01909.18 gi|386002383|ref|YP_005920682.1| - 2.8e-09 37.1 0.0 3.1e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_A PF00476.15 gi|386002384|ref|YP_005920683.1| - 4.1e-55 186.9 0.0 5.5e-55 186.5 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family A Cas_Cas1 PF01867.11 gi|386002385|ref|YP_005920684.1| - 2.5e-86 289.2 0.0 3.3e-86 288.8 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Cas_Cas4 PF01930.12 gi|386002385|ref|YP_005920684.1| - 9.2e-21 74.4 0.0 1.4e-20 73.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|386002385|ref|YP_005920684.1| - 2.1e-08 33.8 0.0 4e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily CRISPR_Cas2 PF09827.4 gi|386002386|ref|YP_005920685.1| - 3.8e-19 68.6 0.0 4.2e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_csx3 PF09620.5 gi|386002388|ref|YP_005920687.1| - 7.2e-23 80.1 0.4 8.8e-23 79.9 0.3 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_csx3) HAS-barrel PF09378.5 gi|386002388|ref|YP_005920687.1| - 0.0021 17.9 0.0 1.3 8.9 0.0 2.1 1 1 1 2 2 2 2 HAS barrel domain Cas_APE2256 PF09651.5 gi|386002389|ref|YP_005920688.1| - 0.076 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) RAMPs PF03787.10 gi|386002390|ref|YP_005920689.1| - 1.8e-13 50.8 2.6 8.1e-13 48.7 0.5 2.5 2 1 0 2 2 2 1 RAMP superfamily Cas_Cmr5 PF09701.5 gi|386002391|ref|YP_005920690.1| - 1.8e-20 73.3 0.0 2e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.10 gi|386002392|ref|YP_005920691.1| - 1.2e-23 84.0 0.1 2.4e-23 83.1 0.1 1.4 1 1 0 1 1 1 1 RAMP superfamily Cas_Cmr3 PF09700.5 gi|386002393|ref|YP_005920692.1| - 7.3e-62 209.8 0.0 8.2e-62 209.6 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr3) DUF3692 PF12469.3 gi|386002394|ref|YP_005920693.1| - 4.7e-06 26.8 0.0 4.8e-05 23.5 0.0 2.4 2 1 0 2 2 2 1 CRISPR-associated protein RAMPs PF03787.10 gi|386002395|ref|YP_005920694.1| - 3.4e-09 36.8 0.5 1.7e-08 34.5 0.2 2.2 2 1 0 2 2 2 1 RAMP superfamily Cas_GSU0054 PF09609.5 gi|386002396|ref|YP_005920695.1| - 4.4e-21 75.2 0.0 5.3e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein, GSU0054 family (Cas_GSU0054) CPSase_L_D2 PF02786.12 gi|386002397|ref|YP_005920696.1| - 3.7e-96 320.4 1.4 1.7e-57 194.1 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|386002397|ref|YP_005920696.1| - 9e-48 160.9 0.0 3.1e-23 81.9 0.0 2.7 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|386002397|ref|YP_005920696.1| - 9e-39 133.1 0.1 8.7e-20 71.2 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|386002397|ref|YP_005920696.1| - 6.8e-29 100.6 0.0 3.3e-06 26.1 0.1 4.2 4 0 0 4 4 4 4 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D3 PF02787.14 gi|386002397|ref|YP_005920696.1| - 3.8e-27 94.5 0.0 2.7e-26 91.7 0.0 2.5 2 1 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.17 gi|386002397|ref|YP_005920696.1| - 3.8e-24 84.9 0.2 3.7e-11 42.6 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain MGS PF02142.17 gi|386002397|ref|YP_005920696.1| - 1.3e-20 73.0 0.0 1.1e-19 70.1 0.0 2.6 3 0 0 3 3 3 1 MGS-like domain Dala_Dala_lig_C PF07478.8 gi|386002397|ref|YP_005920696.1| - 2.9e-14 52.9 0.2 1.1e-05 24.9 0.0 2.7 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|386002397|ref|YP_005920696.1| - 8.5e-09 35.4 0.2 0.0009 19.1 0.1 2.4 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|386002397|ref|YP_005920696.1| - 5.8e-08 32.5 0.3 0.01 15.3 0.0 2.6 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|386002397|ref|YP_005920696.1| - 1.9e-06 27.2 0.0 0.073 12.2 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|386002397|ref|YP_005920696.1| - 6.3e-06 25.7 0.0 0.023 14.0 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain Pyr_redox_2 PF07992.9 gi|386002397|ref|YP_005920696.1| - 0.092 12.6 0.0 21 4.9 0.0 2.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UPF0104 PF03706.8 gi|386002398|ref|YP_005920697.1| - 9.2e-34 117.0 35.1 1.2e-33 116.6 24.3 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glyco_trans_1_3 PF13528.1 gi|386002399|ref|YP_005920698.1| - 6.4e-14 51.8 0.0 2.9e-07 29.9 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|386002399|ref|YP_005920698.1| - 0.00032 20.3 0.0 0.00046 19.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_4_4 PF13579.1 gi|386002399|ref|YP_005920698.1| - 0.058 13.5 0.0 0.15 12.1 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|386002399|ref|YP_005920698.1| - 0.08 12.6 0.0 0.44 10.2 0.0 2.1 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Methyltransf_31 PF13847.1 gi|386002400|ref|YP_005920699.1| - 1.6e-25 89.4 0.0 2e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386002400|ref|YP_005920699.1| - 2.6e-22 79.1 0.0 4e-22 78.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386002400|ref|YP_005920699.1| - 3.3e-22 79.1 0.0 1.2e-21 77.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386002400|ref|YP_005920699.1| - 8.9e-19 67.8 0.0 1.3e-18 67.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386002400|ref|YP_005920699.1| - 1.9e-17 63.4 0.0 2.9e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386002400|ref|YP_005920699.1| - 1.2e-14 54.5 0.0 2.2e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386002400|ref|YP_005920699.1| - 3.8e-14 52.3 0.0 5.4e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|386002400|ref|YP_005920699.1| - 1.2e-10 41.4 0.0 3.3e-10 40.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|386002400|ref|YP_005920699.1| - 1.4e-08 34.3 0.0 2.2e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|386002400|ref|YP_005920699.1| - 5.1e-08 32.7 0.0 7e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|386002400|ref|YP_005920699.1| - 4.6e-07 29.2 0.0 6.6e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|386002400|ref|YP_005920699.1| - 6e-07 28.6 0.0 9.7e-07 28.0 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase RrnaAD PF00398.15 gi|386002400|ref|YP_005920699.1| - 3.7e-06 26.1 0.0 5.3e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DREV PF05219.7 gi|386002400|ref|YP_005920699.1| - 0.00019 20.4 0.0 0.00028 19.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|386002400|ref|YP_005920699.1| - 0.00052 19.4 0.0 0.00069 19.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.1 gi|386002400|ref|YP_005920699.1| - 0.0044 16.7 0.0 0.0066 16.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|386002400|ref|YP_005920699.1| - 0.0056 15.9 0.0 0.01 15.0 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase Fibrillarin PF01269.12 gi|386002400|ref|YP_005920699.1| - 0.0089 14.9 0.0 0.017 14.0 0.0 1.4 1 0 0 1 1 1 1 Fibrillarin PrmA PF06325.8 gi|386002400|ref|YP_005920699.1| - 0.011 14.8 0.0 0.015 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|386002400|ref|YP_005920699.1| - 0.021 14.0 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB MetW PF07021.7 gi|386002400|ref|YP_005920699.1| - 0.025 13.9 0.0 0.045 13.1 0.0 1.5 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW FmrO PF07091.6 gi|386002400|ref|YP_005920699.1| - 0.052 12.5 0.0 0.069 12.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) N6_N4_Mtase PF01555.13 gi|386002400|ref|YP_005920699.1| - 0.061 12.8 0.0 0.25 10.7 0.0 1.8 2 0 0 2 2 2 0 DNA methylase Methyltransf_24 PF13578.1 gi|386002400|ref|YP_005920699.1| - 0.1 13.4 0.0 0.75 10.6 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_8 PF05148.10 gi|386002400|ref|YP_005920699.1| - 0.13 11.8 0.0 1.2 8.7 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase LigD_N PF13298.1 gi|386002401|ref|YP_005920700.1| - 1.3e-40 137.7 0.0 1.9e-40 137.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) TPR_1 PF00515.23 gi|386002402|ref|YP_005920701.1| - 2.9e-213 681.8 115.4 5.7e-12 44.6 0.3 24.9 24 1 1 25 25 25 23 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386002402|ref|YP_005920701.1| - 1.6e-212 687.5 138.4 1.8e-21 75.5 0.5 15.1 5 2 14 19 19 19 18 TPR repeat TPR_2 PF07719.12 gi|386002402|ref|YP_005920701.1| - 9.3e-168 531.0 107.3 1.4e-09 37.1 0.6 24.9 25 0 0 25 25 25 21 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386002402|ref|YP_005920701.1| - 1.5e-141 449.1 97.5 5.9e-08 32.3 0.9 24.6 24 0 0 24 24 24 20 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386002402|ref|YP_005920701.1| - 1.1e-135 440.0 103.0 1.9e-14 53.8 2.9 15.6 5 4 10 18 18 18 17 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386002402|ref|YP_005920701.1| - 3.1e-107 342.5 101.6 6.3e-07 28.7 0.1 24.3 20 4 5 25 25 25 21 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386002402|ref|YP_005920701.1| - 2.6e-99 316.5 65.0 7.8e-06 26.0 0.5 22.9 4 4 18 22 22 22 20 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386002402|ref|YP_005920701.1| - 5.1e-90 295.4 112.4 1.4e-12 47.3 1.9 15.6 4 2 15 19 19 19 17 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386002402|ref|YP_005920701.1| - 1e-67 224.4 76.2 6.7e-09 35.9 0.7 14.9 9 4 5 15 15 15 13 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386002402|ref|YP_005920701.1| - 8.1e-61 201.8 32.0 8.6e-06 25.5 0.2 14.6 7 3 8 16 16 16 14 Tetratricopeptide repeat Apc3 PF12895.2 gi|386002402|ref|YP_005920701.1| - 3.1e-60 200.2 49.2 3.3e-09 36.7 0.1 11.3 5 4 8 13 13 12 12 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|386002402|ref|YP_005920701.1| - 5.1e-55 180.2 72.4 0.0008 19.7 0.4 23.8 24 0 0 24 24 24 13 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386002402|ref|YP_005920701.1| - 3.4e-47 154.5 62.9 0.0049 16.5 0.0 20.7 20 1 1 21 21 20 13 Tetratricopeptide repeat NARP1 PF12569.3 gi|386002402|ref|YP_005920701.1| - 2.6e-26 92.4 24.9 7.7e-06 24.9 2.4 10.4 4 4 6 10 10 10 9 NMDA receptor-regulated protein 1 BTAD PF03704.12 gi|386002402|ref|YP_005920701.1| - 6e-23 81.7 20.5 0.00092 19.5 0.1 9.8 5 4 7 13 13 12 7 Bacterial transcriptional activator domain TPR_3 PF07720.7 gi|386002402|ref|YP_005920701.1| - 5.7e-20 70.7 81.7 0.027 14.2 0.7 19.9 21 0 0 21 21 19 6 Tetratricopeptide repeat Apc5 PF12862.2 gi|386002402|ref|YP_005920701.1| - 8.5e-17 60.7 36.2 3.7 7.4 0.4 19.1 11 6 8 20 20 19 1 Anaphase-promoting complex subunit 5 MIT PF04212.13 gi|386002402|ref|YP_005920701.1| - 3.1e-15 55.7 84.2 0.034 14.0 0.1 19.5 18 3 2 20 20 20 5 MIT (microtubule interacting and transport) domain DUF3856 PF12968.2 gi|386002402|ref|YP_005920701.1| - 1.2e-14 54.4 25.0 1.7 8.4 0.1 16.5 3 3 13 17 17 17 1 Domain of Unknown Function (DUF3856) TPR_4 PF07721.9 gi|386002402|ref|YP_005920701.1| - 1.5e-12 46.6 0.3 29 5.4 0.1 11.6 12 0 0 12 12 10 0 Tetratricopeptide repeat PPR PF01535.15 gi|386002402|ref|YP_005920701.1| - 4.6e-11 41.9 1.3 62 3.8 0.0 13.1 15 0 0 15 15 11 0 PPR repeat TPR_10 PF13374.1 gi|386002402|ref|YP_005920701.1| - 2.5e-10 39.9 77.2 1.2 9.1 0.3 19.0 21 0 0 21 21 18 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|386002402|ref|YP_005920701.1| - 2.1e-08 34.1 36.6 0.92 9.6 0.2 12.3 4 2 11 16 16 16 2 Tetratricopeptide repeat FAT PF02259.18 gi|386002402|ref|YP_005920701.1| - 2.2e-06 26.9 37.8 3.1 6.6 2.0 11.3 1 1 6 7 7 7 1 FAT domain Ribosomal_S16 PF00886.14 gi|386002402|ref|YP_005920701.1| - 1.8e-05 24.3 24.6 3 7.6 0.0 12.0 10 4 2 12 12 10 1 Ribosomal protein S16 DUF627 PF04781.7 gi|386002402|ref|YP_005920701.1| - 0.00038 20.0 2.3 43 3.7 0.0 7.3 9 1 1 10 10 7 0 Protein of unknown function (DUF627) TPR_21 PF09976.4 gi|386002402|ref|YP_005920701.1| - 0.0015 18.4 72.3 0.055 13.4 0.5 13.0 11 2 1 13 13 13 3 Tetratricopeptide repeat DUF1250 PF06855.7 gi|386002402|ref|YP_005920701.1| - 0.003 17.0 5.2 42 3.7 0.0 7.9 10 0 0 10 10 9 0 Protein of unknown function (DUF1250) Coatomer_E PF04733.9 gi|386002402|ref|YP_005920701.1| - 0.0094 15.1 11.3 0.08 12.1 0.1 5.6 5 1 1 6 6 6 1 Coatomer epsilon subunit Lambda_Kil PF06301.6 gi|386002402|ref|YP_005920701.1| - 0.0099 15.2 28.1 49 3.4 0.0 13.8 17 0 0 17 17 14 0 Bacteriophage lambda Kil protein DUF3808 PF10300.4 gi|386002402|ref|YP_005920701.1| - 0.022 13.3 5.7 13 4.2 0.0 5.4 4 3 2 7 7 6 0 Protein of unknown function (DUF3808) CBAH PF02275.13 gi|386002402|ref|YP_005920701.1| - 0.042 13.2 0.1 0.42 9.9 0.0 2.6 1 1 1 2 2 2 0 Linear amide C-N hydrolases, choloylglycine hydrolase family TOM20_plant PF06552.7 gi|386002402|ref|YP_005920701.1| - 0.085 12.4 27.4 3.1 7.3 0.0 9.3 3 2 8 12 12 12 0 Plant specific mitochondrial import receptor subunit TOM20 SHNi-TPR PF10516.4 gi|386002402|ref|YP_005920701.1| - 0.37 10.0 0.0 0.37 10.0 0.0 11.2 15 0 0 15 15 12 0 SHNi-TPR PPR_2 PF13041.1 gi|386002402|ref|YP_005920701.1| - 0.74 9.8 11.5 1.2e+02 2.7 0.0 8.8 11 0 0 11 11 8 0 PPR repeat family Fis1_TPR_C PF14853.1 gi|386002402|ref|YP_005920701.1| - 2.3 8.1 45.7 0.46 10.3 0.1 12.9 19 0 0 19 19 13 0 Fis1 C-terminal tetratricopeptide repeat PPTA PF01239.17 gi|386002402|ref|YP_005920701.1| - 2.4 7.6 31.3 2.6 7.5 0.0 10.2 12 0 0 12 12 11 0 Protein prenyltransferase alpha subunit repeat DHquinase_I PF01487.10 gi|386002402|ref|YP_005920701.1| - 4.7 6.8 9.2 34 4.0 0.0 5.8 6 1 1 7 7 7 0 Type I 3-dehydroquinase Radical_SAM PF04055.16 gi|386002403|ref|YP_005920702.1| - 4e-11 43.3 0.4 1.1e-10 41.9 0.3 1.8 1 1 0 1 1 1 1 Radical SAM superfamily NIL PF09383.5 gi|386002403|ref|YP_005920702.1| - 0.046 13.3 0.0 0.14 11.7 0.0 1.8 1 1 0 1 1 1 0 NIL domain Hist_deacetyl PF00850.14 gi|386002404|ref|YP_005920703.1| - 1.1e-36 126.7 2.9 8.7e-26 90.9 0.2 3.1 2 1 1 3 3 3 3 Histone deacetylase domain Desulfoferrod_N PF06397.7 gi|386002405|ref|YP_005920704.1| - 2.7e-17 61.8 8.0 2.9e-17 61.7 5.6 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain A2L_zn_ribbon PF08792.5 gi|386002405|ref|YP_005920704.1| - 0.0051 16.2 0.4 0.16 11.4 0.7 2.1 1 1 1 2 2 2 1 A2L zinc ribbon domain RRN7 PF11781.3 gi|386002405|ref|YP_005920704.1| - 0.0066 15.9 0.5 0.0078 15.6 0.3 1.2 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 DUF1922 PF09082.5 gi|386002405|ref|YP_005920704.1| - 0.081 13.0 0.6 0.085 12.9 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) DUF3449 PF11931.3 gi|386002405|ref|YP_005920704.1| - 0.14 11.6 0.1 0.15 11.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) Zn_ribbon_recom PF13408.1 gi|386002405|ref|YP_005920704.1| - 0.29 11.4 1.8 2.4 8.4 0.2 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain TF_Zn_Ribbon PF08271.7 gi|386002405|ref|YP_005920704.1| - 0.35 10.2 2.0 0.74 9.1 1.3 1.6 1 1 1 2 2 2 0 TFIIB zinc-binding ANP PF00212.13 gi|386002406|ref|YP_005920705.1| - 0.085 12.9 0.6 0.51 10.4 0.2 2.2 2 0 0 2 2 2 0 Atrial natriuretic peptide CitG PF01874.11 gi|386002407|ref|YP_005920706.1| - 7.4e-67 225.4 0.7 8.3e-67 225.2 0.5 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|386002408|ref|YP_005920707.1| - 4.9e-46 156.5 0.1 5.6e-46 156.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Rad51 PF08423.6 gi|386002409|ref|YP_005920708.1| - 1.9e-32 112.1 0.3 2.4e-32 111.8 0.2 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|386002409|ref|YP_005920708.1| - 9.9e-14 51.1 0.0 1.5e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zot PF05707.7 gi|386002409|ref|YP_005920708.1| - 9.2e-10 38.3 0.0 1.1e-09 38.0 0.0 1.0 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) KaiC PF06745.8 gi|386002409|ref|YP_005920708.1| - 2e-09 36.8 4.0 6e-09 35.3 2.8 1.9 1 1 0 1 1 1 1 KaiC RecA PF00154.16 gi|386002409|ref|YP_005920708.1| - 3.6e-09 36.1 0.2 4.3e-09 35.8 0.2 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.1 gi|386002409|ref|YP_005920708.1| - 0.00022 20.8 0.0 0.00032 20.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|386002409|ref|YP_005920708.1| - 0.00041 20.5 0.1 0.0011 19.2 0.1 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|386002409|ref|YP_005920708.1| - 0.00086 19.4 0.0 0.0016 18.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|386002409|ref|YP_005920708.1| - 0.0023 16.6 0.2 0.0044 15.7 0.1 1.4 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.1 gi|386002409|ref|YP_005920708.1| - 0.0078 15.8 0.1 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|386002409|ref|YP_005920708.1| - 0.013 14.9 0.2 0.022 14.1 0.1 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.1 gi|386002409|ref|YP_005920708.1| - 0.015 15.0 0.3 0.036 13.8 0.2 1.6 1 0 0 1 1 1 0 Part of AAA domain SRP54 PF00448.17 gi|386002409|ref|YP_005920708.1| - 0.015 14.7 0.1 0.03 13.7 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PhoH PF02562.11 gi|386002409|ref|YP_005920708.1| - 0.017 14.3 0.3 0.033 13.4 0.2 1.4 1 0 0 1 1 1 0 PhoH-like protein DUF2075 PF09848.4 gi|386002409|ref|YP_005920708.1| - 0.018 14.0 0.0 0.021 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|386002409|ref|YP_005920708.1| - 0.019 14.3 0.1 0.091 12.1 0.1 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.1 gi|386002409|ref|YP_005920708.1| - 0.033 14.1 0.1 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|386002409|ref|YP_005920708.1| - 0.038 13.6 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|386002409|ref|YP_005920708.1| - 0.064 12.6 0.2 0.15 11.4 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain MipZ PF09140.6 gi|386002409|ref|YP_005920708.1| - 0.075 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ MobB PF03205.9 gi|386002409|ref|YP_005920708.1| - 0.079 12.6 0.1 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DAP3 PF10236.4 gi|386002409|ref|YP_005920708.1| - 0.089 11.7 0.1 0.19 10.6 0.1 1.4 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 TroA PF01297.12 gi|386002409|ref|YP_005920708.1| - 0.14 11.3 0.0 1.9 7.6 0.0 2.0 2 0 0 2 2 2 0 Periplasmic solute binding protein family NB-ARC PF00931.17 gi|386002409|ref|YP_005920708.1| - 0.18 10.6 0.3 0.28 10.0 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain US22 PF02393.11 gi|386002410|ref|YP_005920709.1| - 0.069 13.1 0.2 4.6 7.2 0.0 3.0 2 1 1 3 3 3 0 US22 like Kelch_3 PF13415.1 gi|386002410|ref|YP_005920709.1| - 0.75 10.0 7.1 38 4.6 0.0 4.8 4 1 1 5 5 5 0 Galactose oxidase, central domain CoA_binding_2 PF13380.1 gi|386002411|ref|YP_005920710.1| - 7.7e-29 100.2 0.0 8.8e-29 100.0 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|386002411|ref|YP_005920710.1| - 0.00012 22.5 0.0 0.00018 21.9 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain STT3 PF02516.9 gi|386002412|ref|YP_005920711.1| - 1.5e-30 106.6 22.6 1.6e-29 103.2 15.6 2.1 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|386002412|ref|YP_005920711.1| - 2.7e-11 43.6 8.2 2.7e-11 43.6 5.7 3.5 2 2 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|386002412|ref|YP_005920711.1| - 0.0005 19.5 5.8 0.0005 19.5 4.0 2.0 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase HAD PF12710.2 gi|386002413|ref|YP_005920712.1| - 9.9e-18 64.9 0.2 2.1e-17 63.9 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ACT_6 PF13740.1 gi|386002413|ref|YP_005920712.1| - 6.5e-14 51.4 1.8 5.6e-10 38.8 0.1 2.6 2 1 0 2 2 2 2 ACT domain ACT PF01842.20 gi|386002413|ref|YP_005920712.1| - 2.8e-12 45.8 1.5 3e-07 29.7 0.2 2.7 2 0 0 2 2 2 2 ACT domain Hydrolase PF00702.21 gi|386002413|ref|YP_005920712.1| - 9.1e-12 45.8 3.2 8.4e-11 42.6 1.2 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|386002413|ref|YP_005920712.1| - 2.4e-10 40.4 1.0 6.8e-09 35.6 0.2 2.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|386002413|ref|YP_005920712.1| - 5.3e-10 39.8 0.1 2.7e-09 37.4 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|386002413|ref|YP_005920712.1| - 1.4e-09 37.4 0.0 1.9e-07 30.5 0.0 2.2 2 0 0 2 2 2 1 Putative Phosphatase ACT_4 PF13291.1 gi|386002413|ref|YP_005920712.1| - 7e-07 29.5 1.6 0.07 13.4 0.0 3.2 3 0 0 3 3 3 2 ACT domain S6PP PF05116.8 gi|386002413|ref|YP_005920712.1| - 0.083 12.1 0.1 1.2 8.3 0.0 2.1 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase DNA_PPF PF02916.10 gi|386002413|ref|YP_005920712.1| - 0.1 12.7 0.1 0.24 11.4 0.1 1.6 1 0 0 1 1 1 0 DNA polymerase processivity factor Hydrolase_like PF13242.1 gi|386002413|ref|YP_005920712.1| - 0.13 12.0 0.4 1.3 8.8 0.2 2.4 2 0 0 2 2 2 0 HAD-hyrolase-like SAP PF02037.22 gi|386002413|ref|YP_005920712.1| - 0.13 11.8 0.4 0.42 10.1 0.3 1.9 1 0 0 1 1 1 0 SAP domain Ribosomal_S19e PF01090.14 gi|386002414|ref|YP_005920713.1| - 5.9e-57 191.0 0.0 6.7e-57 190.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.16 gi|386002414|ref|YP_005920713.1| - 0.035 13.5 0.0 0.078 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_12 PF08461.5 gi|386002414|ref|YP_005920713.1| - 0.081 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain dsDNA_bind PF01984.15 gi|386002415|ref|YP_005920714.1| - 2.7e-31 107.7 19.6 3.1e-31 107.5 13.6 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain ASRT PF07100.6 gi|386002415|ref|YP_005920714.1| - 0.027 14.2 0.2 0.035 13.8 0.1 1.2 1 0 0 1 1 1 0 Anabaena sensory rhodopsin transducer DUF4279 PF14106.1 gi|386002415|ref|YP_005920714.1| - 0.12 12.2 0.9 1.5 8.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4279) DUF4411 PF14367.1 gi|386002415|ref|YP_005920714.1| - 0.19 11.4 1.3 0.24 11.1 0.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) DUF4570 PF15134.1 gi|386002415|ref|YP_005920714.1| - 1 9.2 11.1 0.71 9.7 6.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4570) DUF2924 PF11149.3 gi|386002415|ref|YP_005920714.1| - 3.7 7.5 7.4 4.6 7.2 5.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2924) Asn_synthase PF00733.16 gi|386002416|ref|YP_005920715.1| - 4.4e-05 23.1 0.0 0.00045 19.8 0.0 2.0 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|386002416|ref|YP_005920715.1| - 0.00087 18.6 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|386002416|ref|YP_005920715.1| - 0.0044 16.4 0.0 0.0061 15.9 0.0 1.3 1 0 0 1 1 1 1 ATP-binding region ThiI PF02568.9 gi|386002416|ref|YP_005920715.1| - 0.045 13.2 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|386002416|ref|YP_005920715.1| - 0.084 11.4 0.0 0.17 10.4 0.0 1.6 1 1 0 1 1 1 0 tRNA methyl transferase Ribosomal_L39 PF00832.15 gi|386002417|ref|YP_005920716.1| - 2.2e-18 65.4 6.8 2.6e-18 65.1 4.7 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|386002418|ref|YP_005920717.1| - 3.2e-28 97.2 1.6 4e-28 96.9 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Spore_IV_A PF09547.5 gi|386002418|ref|YP_005920717.1| - 0.043 12.5 0.0 0.048 12.3 0.0 1.0 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) eIF-6 PF01912.13 gi|386002419|ref|YP_005920718.1| - 9.4e-64 214.1 0.0 1.1e-63 213.9 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18ae PF01775.12 gi|386002420|ref|YP_005920719.1| - 1.1e-08 35.0 0.1 1.3e-08 34.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain DUF3808 PF10300.4 gi|386002420|ref|YP_005920719.1| - 0.041 12.4 0.0 0.041 12.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3808) Prefoldin PF02996.12 gi|386002421|ref|YP_005920720.1| - 7.5e-23 80.4 3.4 8.9e-23 80.2 2.3 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|386002421|ref|YP_005920720.1| - 3.2e-06 26.8 2.9 0.00045 19.9 0.5 2.1 2 0 0 2 2 2 2 Prefoldin subunit V-SNARE PF05008.10 gi|386002421|ref|YP_005920720.1| - 0.078 13.1 7.8 1.6 8.9 1.1 2.5 2 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Tropomyosin_1 PF12718.2 gi|386002421|ref|YP_005920720.1| - 0.084 12.7 4.5 2.2 8.0 1.6 2.1 2 0 0 2 2 2 0 Tropomyosin like Seryl_tRNA_N PF02403.17 gi|386002421|ref|YP_005920720.1| - 0.14 12.2 4.6 0.31 11.0 0.9 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4055 PF13264.1 gi|386002421|ref|YP_005920720.1| - 0.35 10.9 4.4 0.67 10.0 3.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4055) MerR-DNA-bind PF09278.6 gi|386002421|ref|YP_005920720.1| - 0.51 10.7 5.0 7.5 7.0 0.1 2.4 2 0 0 2 2 2 0 MerR, DNA binding DUF4140 PF13600.1 gi|386002421|ref|YP_005920720.1| - 0.84 10.1 6.1 0.76 10.2 0.7 2.3 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Nsp1_C PF05064.8 gi|386002421|ref|YP_005920720.1| - 5 6.7 6.9 2.2 7.9 1.2 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region SRP54 PF00448.17 gi|386002422|ref|YP_005920721.1| - 8.7e-72 240.6 0.1 1.2e-71 240.2 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|386002422|ref|YP_005920721.1| - 6.9e-13 48.5 1.6 6.9e-13 48.5 1.1 2.4 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.1 gi|386002422|ref|YP_005920721.1| - 1.1e-06 28.4 0.2 2.3e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|386002422|ref|YP_005920721.1| - 8.6e-06 25.5 0.3 2.6e-05 23.9 0.2 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|386002422|ref|YP_005920721.1| - 6.1e-05 23.1 0.0 0.00014 22.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|386002422|ref|YP_005920721.1| - 0.00026 20.6 0.1 0.00074 19.2 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain Thymidylate_kin PF02223.12 gi|386002422|ref|YP_005920721.1| - 0.00055 19.3 0.1 0.004 16.5 0.0 2.3 2 1 0 2 2 2 1 Thymidylate kinase T2SE PF00437.15 gi|386002422|ref|YP_005920721.1| - 0.00059 18.8 0.8 0.034 13.0 0.5 2.2 1 1 0 1 1 1 1 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|386002422|ref|YP_005920721.1| - 0.00095 18.3 0.1 0.0018 17.3 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin APS_kinase PF01583.15 gi|386002422|ref|YP_005920721.1| - 0.0011 18.6 0.0 0.0022 17.6 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase CbiA PF01656.18 gi|386002422|ref|YP_005920721.1| - 0.0015 17.9 4.9 0.0029 17.0 1.8 2.4 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.1 gi|386002422|ref|YP_005920721.1| - 0.0016 18.4 0.9 0.0028 17.6 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|386002422|ref|YP_005920721.1| - 0.0018 18.1 0.0 0.0036 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|386002422|ref|YP_005920721.1| - 0.0028 17.8 0.1 0.0072 16.5 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) LpxK PF02606.9 gi|386002422|ref|YP_005920721.1| - 0.0036 16.3 0.0 0.0061 15.5 0.0 1.3 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase KTI12 PF08433.5 gi|386002422|ref|YP_005920721.1| - 0.0065 15.7 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 6PF2K PF01591.13 gi|386002422|ref|YP_005920721.1| - 0.0086 15.1 0.1 0.015 14.3 0.0 1.4 1 1 0 1 1 1 1 6-phosphofructo-2-kinase AAA_17 PF13207.1 gi|386002422|ref|YP_005920721.1| - 0.01 16.6 0.9 0.024 15.4 0.1 2.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|386002422|ref|YP_005920721.1| - 0.013 15.4 0.1 0.046 13.7 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain ResIII PF04851.10 gi|386002422|ref|YP_005920721.1| - 0.018 14.8 0.8 0.022 14.5 0.0 1.5 2 0 0 2 2 1 0 Type III restriction enzyme, res subunit cobW PF02492.14 gi|386002422|ref|YP_005920721.1| - 0.034 13.5 0.2 0.059 12.8 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|386002422|ref|YP_005920721.1| - 0.037 14.3 0.0 0.1 12.8 0.0 1.8 2 1 0 2 2 2 0 ABC transporter NTPase_1 PF03266.10 gi|386002422|ref|YP_005920721.1| - 0.043 13.5 0.7 0.09 12.4 0.1 1.8 2 0 0 2 2 2 0 NTPase Glyco_transf_4 PF13439.1 gi|386002422|ref|YP_005920721.1| - 0.069 12.8 0.1 0.18 11.4 0.1 1.8 1 0 0 1 1 1 0 Glycosyltransferase Family 4 DUF2075 PF09848.4 gi|386002422|ref|YP_005920721.1| - 0.095 11.6 0.3 0.17 10.8 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.9 gi|386002422|ref|YP_005920721.1| - 0.1 12.3 0.0 0.34 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) UPF0278 PF08745.6 gi|386002423|ref|YP_005920722.1| - 7.4e-85 283.3 0.0 8.6e-85 283.1 0.0 1.0 1 0 0 1 1 1 1 UPF0278 family DUF128 PF01995.11 gi|386002424|ref|YP_005920723.1| - 1.6e-77 259.6 0.1 1.8e-77 259.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 HHH_8 PF14716.1 gi|386002425|ref|YP_005920724.1| - 1.8e-23 82.4 2.1 2.5e-22 78.8 0.2 3.3 4 0 0 4 4 4 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.1 gi|386002425|ref|YP_005920724.1| - 2.2e-22 78.5 0.0 5.4e-22 77.2 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb PHP PF02811.14 gi|386002425|ref|YP_005920724.1| - 9.5e-17 61.3 0.1 1.9e-16 60.3 0.0 1.5 1 0 0 1 1 1 1 PHP domain HHH_5 PF14520.1 gi|386002425|ref|YP_005920724.1| - 1.6e-11 44.2 2.5 2.4e-06 27.5 0.0 3.0 3 0 0 3 3 2 2 Helix-hairpin-helix domain HHH PF00633.18 gi|386002425|ref|YP_005920724.1| - 1.8e-06 27.3 3.8 0.014 15.0 0.2 3.7 4 0 0 4 4 4 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|386002425|ref|YP_005920724.1| - 1.3e-05 25.1 0.0 3.3e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta palm NTP_transf_2 PF01909.18 gi|386002425|ref|YP_005920724.1| - 0.0067 16.7 0.0 0.018 15.3 0.0 1.9 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF3701 PF12482.3 gi|386002425|ref|YP_005920724.1| - 0.0076 15.9 0.1 3.9 7.2 0.0 2.8 2 0 0 2 2 2 1 Phage integrase protein HHH_2 PF12826.2 gi|386002425|ref|YP_005920724.1| - 0.01 15.6 0.1 0.12 12.2 0.0 2.7 3 0 0 3 3 3 0 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|386002425|ref|YP_005920724.1| - 0.011 15.6 0.0 0.47 10.4 0.0 2.5 1 1 0 1 1 1 0 Pathogenicity locus HHH_3 PF12836.2 gi|386002425|ref|YP_005920724.1| - 0.022 14.7 1.0 6.9 6.6 0.0 3.4 4 0 0 4 4 4 0 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|386002425|ref|YP_005920724.1| - 0.045 13.3 0.0 0.14 11.7 0.0 1.9 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda Cu-oxidase_4 PF02578.10 gi|386002425|ref|YP_005920724.1| - 0.11 11.5 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 Multi-copper polyphenol oxidoreductase laccase BiPBP_C PF06832.7 gi|386002426|ref|YP_005920725.1| - 0.068 13.1 0.1 0.26 11.2 0.1 1.9 1 1 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family I-set PF07679.11 gi|386002426|ref|YP_005920725.1| - 0.081 12.7 0.1 0.16 11.8 0.0 1.4 2 0 0 2 2 2 0 Immunoglobulin I-set domain Radical_SAM PF04055.16 gi|386002427|ref|YP_005920726.1| - 1.9e-07 31.4 0.0 6.5e-07 29.6 0.0 2.0 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|386002427|ref|YP_005920726.1| - 9.4e-05 22.4 0.0 0.00021 21.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SBP_bac_5 PF00496.17 gi|386002428|ref|YP_005920727.1| - 1.1e-78 264.6 0.3 1.9e-78 263.8 0.2 1.4 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Flavin_Reduct PF01613.13 gi|386002429|ref|YP_005920728.1| - 6.3e-20 71.5 0.0 7.4e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|386002429|ref|YP_005920728.1| - 2e-05 24.2 0.0 3.2e-05 23.5 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF447) UPF0066 PF01980.11 gi|386002430|ref|YP_005920729.1| - 4.3e-34 117.0 0.0 5e-34 116.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 ADH_N_assoc PF13823.1 gi|386002430|ref|YP_005920729.1| - 0.0082 15.7 2.1 0.071 12.7 0.1 2.3 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-associated Cuticle_1 PF08140.6 gi|386002431|ref|YP_005920730.1| - 0.06 13.1 0.0 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 Crustacean cuticle protein repeat DUF772 PF05598.6 gi|386002432|ref|YP_005920731.1| - 2.3e-21 75.4 0.1 5.2e-21 74.3 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|386002432|ref|YP_005920731.1| - 4.3e-12 46.0 0.2 8e-12 45.1 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|386002432|ref|YP_005920731.1| - 1.4e-05 24.7 0.0 3.3e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease Isochorismatase PF00857.15 gi|386002434|ref|YP_005920733.1| - 2.6e-24 86.0 0.0 5.9e-24 84.9 0.0 1.5 1 1 0 1 1 1 1 Isochorismatase family tRNA-synt_1 PF00133.17 gi|386002435|ref|YP_005920734.1| - 1.2e-57 195.2 0.0 6.2e-45 153.3 0.0 3.2 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|386002435|ref|YP_005920734.1| - 1.1e-24 86.9 0.1 8.8e-11 41.0 0.0 3.2 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|386002435|ref|YP_005920734.1| - 2.9e-22 79.0 0.0 5.2e-22 78.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|386002435|ref|YP_005920734.1| - 1.8e-08 33.9 0.0 3.7e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|386002435|ref|YP_005920734.1| - 3.2e-06 26.5 0.0 0.00095 18.3 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|386002435|ref|YP_005920734.1| - 0.0032 16.3 0.1 0.013 14.3 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|386002435|ref|YP_005920734.1| - 0.026 13.1 0.0 0.068 11.8 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (K) Aminotran_1_2 PF00155.16 gi|386002436|ref|YP_005920735.1| - 4.5e-63 213.4 0.0 5e-63 213.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DEAD PF00270.24 gi|386002437|ref|YP_005920736.1| - 7.6e-27 93.8 0.0 1.6e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|386002437|ref|YP_005920736.1| - 1.1e-08 35.1 4.3 1.3e-08 34.8 1.3 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|386002437|ref|YP_005920736.1| - 6.9e-08 32.2 0.0 2e-07 30.7 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Sec63 PF02889.11 gi|386002437|ref|YP_005920736.1| - 9.7e-06 25.0 0.0 1.6e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.10 gi|386002437|ref|YP_005920736.1| - 2.5e-05 24.1 0.0 0.00012 22.0 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.4 gi|386002437|ref|YP_005920736.1| - 0.00078 18.9 0.1 0.013 15.0 0.0 2.6 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|386002437|ref|YP_005920736.1| - 0.001 18.9 0.2 0.0032 17.3 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|386002437|ref|YP_005920736.1| - 0.034 14.0 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 Pathogenicity locus KaiC PF06745.8 gi|386002437|ref|YP_005920736.1| - 0.14 11.2 0.0 0.51 9.4 0.0 1.9 2 0 0 2 2 2 0 KaiC HHH PF00633.18 gi|386002437|ref|YP_005920736.1| - 0.15 11.8 0.9 0.82 9.5 0.0 2.7 2 1 0 2 2 2 0 Helix-hairpin-helix motif Radical_SAM PF04055.16 gi|386002438|ref|YP_005920737.1| - 1.1e-18 67.9 0.0 3.9e-18 66.1 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|386002438|ref|YP_005920737.1| - 8.2e-10 38.7 0.0 1.3e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|386002438|ref|YP_005920737.1| - 5.7e-09 36.2 0.0 8.3e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain AAA_18 PF13238.1 gi|386002439|ref|YP_005920738.1| - 1.3e-12 48.1 0.0 1.7e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|386002439|ref|YP_005920738.1| - 3.1e-09 36.8 0.0 4.3e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|386002439|ref|YP_005920738.1| - 9.5e-09 36.1 0.0 1.5e-08 35.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain PEP-utilizers PF00391.18 gi|386002439|ref|YP_005920738.1| - 0.018 14.6 0.2 0.018 14.6 0.1 1.6 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain ADK PF00406.17 gi|386002439|ref|YP_005920738.1| - 0.018 14.8 0.1 0.069 13.0 0.0 1.8 2 0 0 2 2 2 0 Adenylate kinase CoaE PF01121.15 gi|386002439|ref|YP_005920738.1| - 0.02 14.2 0.1 0.09 12.1 0.0 1.9 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA_16 PF13191.1 gi|386002440|ref|YP_005920739.1| - 7.9e-07 29.2 0.0 1.5e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain DUF3666 PF12408.3 gi|386002440|ref|YP_005920739.1| - 0.0055 15.7 0.4 0.062 12.4 0.1 2.8 3 1 0 3 3 3 1 Ribose-5-phosphate isomerase ComA PF02679.10 gi|386002440|ref|YP_005920739.1| - 0.015 14.3 0.4 0.038 13.0 0.1 1.8 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) AAA_17 PF13207.1 gi|386002440|ref|YP_005920739.1| - 0.022 15.5 0.4 0.069 13.9 0.3 2.0 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|386002440|ref|YP_005920739.1| - 0.14 11.3 0.0 2.7 7.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF258 KAP_NTPase PF07693.9 gi|386002440|ref|YP_005920739.1| - 0.17 10.8 2.5 0.3 10.0 1.7 1.5 1 1 0 1 1 1 0 KAP family P-loop domain TPR_1 PF00515.23 gi|386002441|ref|YP_005920740.1| - 8.1e-53 173.9 20.5 3.7e-10 38.9 0.0 9.7 9 1 1 10 10 10 6 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386002441|ref|YP_005920740.1| - 3.9e-49 164.1 27.2 5.6e-13 48.3 0.0 6.7 5 2 2 8 8 7 5 TPR repeat TPR_2 PF07719.12 gi|386002441|ref|YP_005920740.1| - 1.2e-46 152.8 25.1 2.9e-08 33.0 0.0 9.8 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386002441|ref|YP_005920740.1| - 7.6e-44 144.2 14.4 4e-06 26.5 0.0 8.5 9 0 0 9 9 8 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386002441|ref|YP_005920740.1| - 6.8e-40 131.8 23.5 2.6e-07 29.9 0.0 9.2 10 0 0 10 10 9 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386002441|ref|YP_005920740.1| - 4.5e-37 125.8 21.4 1.9e-14 53.3 0.1 6.5 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386002441|ref|YP_005920740.1| - 1.1e-28 97.1 27.5 1.1e-05 25.6 0.5 9.1 2 2 7 9 9 9 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386002441|ref|YP_005920740.1| - 5.8e-28 96.9 20.9 6.4e-09 36.2 0.3 6.2 3 2 2 6 6 6 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386002441|ref|YP_005920740.1| - 1.5e-19 69.6 10.9 4e-07 29.7 0.6 5.1 2 1 2 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386002441|ref|YP_005920740.1| - 6.8e-19 66.9 12.6 0.00081 19.6 0.0 9.2 10 0 0 10 10 9 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386002441|ref|YP_005920740.1| - 8.3e-19 67.7 24.7 0.00014 22.0 0.2 6.6 4 1 3 7 7 7 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386002441|ref|YP_005920740.1| - 8.3e-18 62.7 17.0 0.0012 18.5 0.0 8.1 7 1 0 7 7 7 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|386002441|ref|YP_005920740.1| - 2e-12 47.0 8.8 6.8e-06 26.1 0.1 4.1 3 2 0 4 4 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|386002441|ref|YP_005920740.1| - 3.7e-12 45.7 18.7 0.089 12.7 0.0 8.5 9 0 0 9 9 9 4 Tetratricopeptide repeat DUF3856 PF12968.2 gi|386002441|ref|YP_005920740.1| - 2.5e-10 40.3 12.3 0.00068 19.4 0.1 6.0 1 1 4 5 5 5 3 Domain of Unknown Function (DUF3856) BTAD PF03704.12 gi|386002441|ref|YP_005920740.1| - 4.7e-10 39.9 7.9 0.0019 18.5 0.0 4.2 1 1 3 4 4 4 4 Bacterial transcriptional activator domain NARP1 PF12569.3 gi|386002441|ref|YP_005920740.1| - 6.4e-09 35.0 8.5 0.0036 16.1 0.2 3.6 1 1 3 4 4 4 4 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|386002441|ref|YP_005920740.1| - 2.8e-08 33.1 13.6 0.00023 20.3 0.2 3.3 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_5 PF12688.2 gi|386002441|ref|YP_005920740.1| - 1.4e-07 31.5 7.2 0.12 12.3 0.0 5.3 2 2 4 6 6 6 3 Tetratrico peptide repeat TPR_4 PF07721.9 gi|386002441|ref|YP_005920740.1| - 6.2e-06 26.1 9.5 6.6 7.4 0.0 7.7 9 0 0 9 9 7 0 Tetratricopeptide repeat MIT PF04212.13 gi|386002441|ref|YP_005920740.1| - 9e-06 25.4 6.2 0.12 12.3 0.3 4.8 3 2 0 3 3 2 2 MIT (microtubule interacting and transport) domain FAT PF02259.18 gi|386002441|ref|YP_005920740.1| - 2.7e-05 23.3 5.3 0.22 10.4 0.1 4.4 1 1 3 4 4 4 3 FAT domain Coatomer_E PF04733.9 gi|386002441|ref|YP_005920740.1| - 0.0069 15.6 4.5 1.7 7.7 0.0 3.8 1 1 4 5 5 5 1 Coatomer epsilon subunit ChAPs PF09295.5 gi|386002441|ref|YP_005920740.1| - 0.013 14.2 0.4 0.48 9.1 0.5 2.7 2 1 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) PPR PF01535.15 gi|386002441|ref|YP_005920740.1| - 0.02 14.8 5.2 21 5.3 0.0 5.8 7 0 0 7 7 5 0 PPR repeat Apc5 PF12862.2 gi|386002441|ref|YP_005920740.1| - 0.02 14.6 2.1 16 5.3 0.0 4.4 2 2 2 4 4 4 0 Anaphase-promoting complex subunit 5 DUF3366 PF11846.3 gi|386002441|ref|YP_005920740.1| - 0.03 14.2 4.2 4.4 7.1 0.6 3.2 1 1 0 2 2 2 0 Domain of unknown function (DUF3366) TPR_20 PF14561.1 gi|386002441|ref|YP_005920740.1| - 0.048 13.7 12.4 5.1 7.2 0.1 5.0 1 1 5 7 7 7 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|386002441|ref|YP_005920740.1| - 0.049 13.0 4.2 2.3 7.5 0.0 4.2 2 2 3 5 5 5 0 26S proteasome subunit RPN7 TruB_N PF01509.13 gi|386002441|ref|YP_005920740.1| - 0.066 13.3 0.0 14 5.7 0.0 2.6 1 1 1 2 2 2 0 TruB family pseudouridylate synthase (N terminal domain) Alkyl_sulf_dimr PF14863.1 gi|386002441|ref|YP_005920740.1| - 0.085 13.0 2.5 4.8 7.4 0.0 3.3 2 1 0 3 3 3 0 Alkyl sulfatase dimerisation TPR_21 PF09976.4 gi|386002441|ref|YP_005920740.1| - 2 8.3 8.7 1.6 8.6 0.4 3.2 2 1 0 2 2 2 0 Tetratricopeptide repeat ABC2_membrane PF01061.19 gi|386002442|ref|YP_005920741.1| - 1e-36 126.0 14.1 1.4e-36 125.6 9.8 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|386002442|ref|YP_005920741.1| - 2.9e-19 69.3 18.7 2.9e-19 69.3 13.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|386002442|ref|YP_005920741.1| - 3e-07 29.5 17.6 4.7e-07 28.9 12.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|386002442|ref|YP_005920741.1| - 2.2e-05 23.7 12.9 2.7e-05 23.4 8.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2427 PF10348.4 gi|386002442|ref|YP_005920741.1| - 0.48 10.0 5.0 1.2 8.7 3.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF2427) ABC_tran PF00005.22 gi|386002443|ref|YP_005920742.1| - 2.5e-29 102.3 0.0 3.7e-29 101.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386002443|ref|YP_005920742.1| - 3.9e-14 53.2 0.0 1.8e-07 31.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|386002443|ref|YP_005920742.1| - 0.00021 20.7 0.1 0.00039 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|386002443|ref|YP_005920742.1| - 0.00091 18.7 0.0 0.03 13.7 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|386002443|ref|YP_005920742.1| - 0.00098 19.4 0.1 0.0017 18.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|386002443|ref|YP_005920742.1| - 0.0031 17.6 0.0 0.0058 16.7 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_22 PF13401.1 gi|386002443|ref|YP_005920742.1| - 0.0075 16.4 0.0 0.016 15.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|386002443|ref|YP_005920742.1| - 0.021 15.6 0.0 0.093 13.5 0.0 1.9 1 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|386002443|ref|YP_005920742.1| - 0.025 14.7 0.1 0.15 12.2 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|386002443|ref|YP_005920742.1| - 0.028 14.3 0.1 0.074 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|386002443|ref|YP_005920742.1| - 0.029 14.0 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|386002443|ref|YP_005920742.1| - 0.031 13.3 0.0 3.1 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.17 gi|386002443|ref|YP_005920742.1| - 0.032 13.6 0.0 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.1 gi|386002443|ref|YP_005920742.1| - 0.035 14.0 0.0 0.27 11.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|386002443|ref|YP_005920742.1| - 0.042 12.3 0.0 0.052 12.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF4162 PF13732.1 gi|386002443|ref|YP_005920742.1| - 0.056 13.9 0.0 0.12 12.8 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_16 PF13191.1 gi|386002443|ref|YP_005920742.1| - 0.081 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|386002443|ref|YP_005920742.1| - 0.086 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|386002443|ref|YP_005920742.1| - 0.086 12.7 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|386002443|ref|YP_005920742.1| - 0.15 11.1 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|386002443|ref|YP_005920742.1| - 0.16 11.4 0.0 2.1 7.7 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein FmdE PF02663.9 gi|386002444|ref|YP_005920743.1| - 2.3e-39 134.2 0.0 3.3e-28 98.1 0.0 2.1 2 0 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon AIRS PF00586.19 gi|386002446|ref|YP_005920745.1| - 1.9e-16 60.0 0.6 3.7e-16 59.1 0.4 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|386002446|ref|YP_005920745.1| - 3.5e-15 56.3 0.0 6e-15 55.5 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain HEAT_2 PF13646.1 gi|386002447|ref|YP_005920746.1| - 1.1e-62 208.2 14.7 4.4e-23 81.3 0.8 5.0 1 1 4 5 5 5 4 HEAT repeats HEAT PF02985.17 gi|386002447|ref|YP_005920746.1| - 6.8e-36 119.1 4.9 0.00041 20.1 0.0 9.5 9 1 0 9 9 9 7 HEAT repeat HEAT_PBS PF03130.11 gi|386002447|ref|YP_005920746.1| - 1e-34 115.4 41.1 4.9e-07 29.6 0.2 9.3 9 0 0 9 9 9 6 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|386002447|ref|YP_005920746.1| - 5.6e-24 83.9 22.4 8e-05 23.0 0.5 8.7 6 3 3 9 9 9 7 HEAT-like repeat Arm PF00514.18 gi|386002447|ref|YP_005920746.1| - 1.2e-16 59.8 0.4 0.019 14.7 0.0 8.2 2 1 6 8 8 8 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|386002447|ref|YP_005920746.1| - 1.4e-05 23.5 0.0 0.022 13.0 0.0 3.2 2 1 1 3 3 3 3 Adaptin N terminal region Cnd1 PF12717.2 gi|386002447|ref|YP_005920746.1| - 0.0047 16.7 0.0 1.8 8.4 0.0 3.1 2 2 2 4 4 4 1 non-SMC mitotic condensation complex subunit 1 DUF4042 PF13251.1 gi|386002447|ref|YP_005920746.1| - 0.025 14.0 0.0 32 3.9 0.0 3.9 2 2 2 4 4 4 0 Domain of unknown function (DUF4042) Tex_N PF09371.5 gi|386002447|ref|YP_005920746.1| - 0.21 10.9 0.0 0.36 10.1 0.0 1.3 1 0 0 1 1 1 0 Tex-like protein N-terminal domain Cohesin_HEAT PF12765.2 gi|386002447|ref|YP_005920746.1| - 0.63 10.0 6.7 8.2 6.5 0.1 4.4 4 0 0 4 4 4 0 HEAT repeat associated with sister chromatid cohesion PAS_9 PF13426.1 gi|386002448|ref|YP_005920747.1| - 6.2e-81 267.5 0.1 7.8e-15 55.1 0.0 7.4 7 0 0 7 7 7 6 PAS domain PAS_4 PF08448.5 gi|386002448|ref|YP_005920747.1| - 3.7e-66 220.0 4.0 5.3e-11 42.5 0.0 7.6 7 1 0 7 7 7 7 PAS fold PAS_3 PF08447.6 gi|386002448|ref|YP_005920747.1| - 1.6e-63 210.8 0.1 8.9e-12 44.9 0.0 7.7 7 0 0 7 7 7 7 PAS fold PAS PF00989.19 gi|386002448|ref|YP_005920747.1| - 3.6e-55 184.5 0.8 8.2e-11 41.6 0.0 7.9 8 1 0 8 8 8 6 PAS fold PAS_8 PF13188.1 gi|386002448|ref|YP_005920747.1| - 4.2e-30 102.5 3.3 1.2e-06 28.1 0.0 6.3 6 0 0 6 6 6 5 PAS domain HATPase_c PF02518.21 gi|386002448|ref|YP_005920747.1| - 5.5e-22 77.5 0.0 1.7e-21 76.0 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|386002448|ref|YP_005920747.1| - 2e-14 53.3 2.2 2.3e-13 49.8 0.1 3.3 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|386002448|ref|YP_005920747.1| - 1.8e-12 47.2 0.0 0.024 14.6 0.1 6.0 5 2 0 5 5 5 3 PAS fold PAS_11 PF14598.1 gi|386002448|ref|YP_005920747.1| - 4e-10 39.6 0.0 0.007 16.3 0.0 5.3 5 1 1 6 6 6 2 PAS domain MEKHLA PF08670.6 gi|386002448|ref|YP_005920747.1| - 0.0024 17.3 0.1 0.073 12.6 0.0 2.4 2 0 0 2 2 2 1 MEKHLA domain PAS_10 PF13596.1 gi|386002448|ref|YP_005920747.1| - 0.026 14.7 0.0 10 6.4 0.0 4.6 6 0 0 6 6 6 0 PAS domain HATPase_c_5 PF14501.1 gi|386002448|ref|YP_005920747.1| - 0.039 13.6 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 1 0 GHKL domain MFS_1 PF07690.11 gi|386002449|ref|YP_005920748.1| - 1.1e-52 178.9 62.1 2.5e-33 115.2 16.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|386002449|ref|YP_005920748.1| - 9.7e-08 31.0 13.2 9.7e-08 31.0 9.2 2.3 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|386002449|ref|YP_005920748.1| - 3.8e-07 28.6 4.1 3.8e-07 28.6 2.9 2.0 1 1 0 2 2 2 1 Transmembrane secretion effector MFS_2 PF13347.1 gi|386002449|ref|YP_005920748.1| - 5.4e-05 21.7 9.1 5.4e-05 21.7 6.3 3.4 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|386002449|ref|YP_005920748.1| - 0.028 14.2 0.5 0.028 14.2 0.3 3.6 5 0 0 5 5 5 0 MFS_1 like family OATP PF03137.15 gi|386002449|ref|YP_005920748.1| - 0.9 7.5 17.7 0.045 11.8 0.9 3.5 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family MarR_2 PF12802.2 gi|386002450|ref|YP_005920749.1| - 9.9e-07 28.3 0.4 4.8e-06 26.1 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|386002450|ref|YP_005920749.1| - 9.1e-06 25.2 0.2 4.5e-05 23.0 0.0 2.2 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|386002450|ref|YP_005920749.1| - 4.7e-05 22.9 0.1 0.00022 20.8 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|386002450|ref|YP_005920749.1| - 0.00035 20.0 0.1 0.0015 18.0 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|386002450|ref|YP_005920749.1| - 0.0006 19.5 0.6 0.0055 16.4 0.0 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|386002450|ref|YP_005920749.1| - 0.00093 19.2 0.1 0.0061 16.6 0.1 2.2 1 1 2 3 3 3 1 Penicillinase repressor Sulfolobus_pRN PF05584.6 gi|386002450|ref|YP_005920749.1| - 0.0015 18.4 0.1 0.0043 16.9 0.0 1.7 2 0 0 2 2 1 1 Sulfolobus plasmid regulatory protein TrmB PF01978.14 gi|386002450|ref|YP_005920749.1| - 0.0073 15.9 1.2 0.013 15.1 0.1 1.9 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|386002450|ref|YP_005920749.1| - 0.008 15.5 0.0 0.024 14.0 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|386002450|ref|YP_005920749.1| - 0.013 15.6 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|386002450|ref|YP_005920749.1| - 0.018 15.3 0.1 0.058 13.7 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain AAA_30 PF13604.1 gi|386002450|ref|YP_005920749.1| - 0.019 14.5 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain HTH_11 PF08279.7 gi|386002450|ref|YP_005920749.1| - 0.026 14.1 0.0 0.085 12.5 0.0 1.9 2 0 0 2 2 2 0 HTH domain Propeptide_C25 PF08126.6 gi|386002450|ref|YP_005920749.1| - 0.082 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Propeptide_C25 FUR PF01475.14 gi|386002450|ref|YP_005920749.1| - 0.086 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family Rrf2 PF02082.15 gi|386002450|ref|YP_005920749.1| - 0.092 12.8 0.0 0.27 11.3 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator CAP160 PF07918.6 gi|386002450|ref|YP_005920749.1| - 0.093 12.3 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 CAP160 repeat MMPL PF03176.10 gi|386002451|ref|YP_005920750.1| - 5.8e-52 176.4 25.7 1.3e-29 102.9 4.8 2.4 2 1 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|386002451|ref|YP_005920750.1| - 2.7e-13 49.6 11.7 1.7e-06 27.5 0.9 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|386002451|ref|YP_005920750.1| - 2.8e-10 39.6 6.8 2.8e-10 39.6 4.7 2.6 3 0 0 3 3 3 1 Protein export membrane protein ACR_tran PF00873.14 gi|386002451|ref|YP_005920750.1| - 2.1e-05 22.2 29.7 0.0045 14.4 6.2 2.4 3 0 0 3 3 3 2 AcrB/AcrD/AcrF family Patched PF02460.13 gi|386002451|ref|YP_005920750.1| - 0.00019 19.5 13.7 0.00019 19.5 9.5 2.9 3 1 0 3 3 3 1 Patched family NPCBM_assoc PF10633.4 gi|386002452|ref|YP_005920751.1| - 2.4e-05 24.2 0.1 0.47 10.5 0.0 3.3 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|386002452|ref|YP_005920751.1| - 0.0042 17.1 0.0 0.72 9.9 0.0 3.2 3 1 0 3 3 3 1 CARDB Peptidase_C25 PF01364.13 gi|386002453|ref|YP_005920752.1| - 2.5e-52 178.1 0.3 3.2e-52 177.7 0.2 1.1 1 0 0 1 1 1 1 Peptidase family C25 Lactamase_B PF00753.22 gi|386002454|ref|YP_005920753.1| - 7.7e-15 55.0 0.5 9.9e-15 54.7 0.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|386002454|ref|YP_005920753.1| - 3.7e-05 23.3 0.7 7.9e-05 22.2 0.5 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|386002454|ref|YP_005920753.1| - 0.0045 16.7 0.0 0.021 14.5 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DUF378 PF04070.7 gi|386002455|ref|YP_005920754.1| - 4.9e-14 51.6 6.3 5.5e-14 51.5 4.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF378) DUF3021 PF11457.3 gi|386002455|ref|YP_005920754.1| - 1.5 8.7 5.0 1.7 8.5 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) DUF3985 PF13153.1 gi|386002455|ref|YP_005920754.1| - 5.7 6.8 8.1 8.9 6.2 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3985) DUF1624 PF07786.7 gi|386002456|ref|YP_005920755.1| - 3.6e-66 222.6 2.8 4.2e-66 222.4 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.17 gi|386002456|ref|YP_005920755.1| - 3.3e-06 26.1 18.3 0.00073 18.4 5.9 2.6 1 1 1 2 2 2 2 Acyltransferase family YjgP_YjgQ PF03739.9 gi|386002456|ref|YP_005920755.1| - 1.1 7.9 6.6 2 7.0 4.6 1.4 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family Lipoprotein_15 PF03640.10 gi|386002457|ref|YP_005920756.1| - 5.8e-22 76.8 1.2 4e-11 42.1 0.1 2.1 2 0 0 2 2 2 2 Secreted repeat of unknown function Lipoprotein_15 PF03640.10 gi|386002458|ref|YP_005920757.1| - 2.2e-27 94.2 1.4 8.7e-13 47.4 0.2 2.2 2 0 0 2 2 2 2 Secreted repeat of unknown function UPF0066 PF01980.11 gi|386002459|ref|YP_005920758.1| - 8.4e-38 129.0 0.0 1.1e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 DUF2116 PF09889.4 gi|386002461|ref|YP_005920760.1| - 2.1e-18 65.8 0.7 2.5e-18 65.6 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ecl1 PF12855.2 gi|386002461|ref|YP_005920760.1| - 0.002 17.3 0.7 0.0023 17.1 0.5 1.2 1 0 0 1 1 1 1 Life-span regulatory factor DZR PF12773.2 gi|386002461|ref|YP_005920760.1| - 0.04 13.7 1.0 0.063 13.1 0.7 1.3 1 1 0 1 1 1 0 Double zinc ribbon DUF4014 PF13198.1 gi|386002461|ref|YP_005920760.1| - 0.097 13.0 0.2 0.13 12.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4014) DUF3357 PF11837.3 gi|386002461|ref|YP_005920760.1| - 0.12 12.1 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) DUF4293 PF14126.1 gi|386002461|ref|YP_005920760.1| - 0.14 12.0 0.8 0.16 11.8 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) zf-DHHC PF01529.15 gi|386002461|ref|YP_005920760.1| - 3 7.2 7.2 11 5.3 5.0 1.8 1 1 0 1 1 1 0 DHHC palmitoyltransferase NosD PF05048.8 gi|386002462|ref|YP_005920761.1| - 4.8e-55 186.2 39.9 3e-31 108.3 6.0 3.1 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|386002462|ref|YP_005920761.1| - 1.1e-40 138.9 51.9 3.3e-19 69.1 10.5 3.2 2 1 1 3 3 3 3 Right handed beta helix region DUF1565 PF07602.6 gi|386002462|ref|YP_005920761.1| - 2.7e-08 33.2 20.7 0.0052 15.9 0.0 4.1 1 1 0 2 2 2 2 Protein of unknown function (DUF1565) Pectinesterase PF01095.14 gi|386002462|ref|YP_005920761.1| - 0.00032 19.3 0.1 0.00059 18.5 0.1 1.4 1 0 0 1 1 1 1 Pectinesterase Pectate_lyase_3 PF12708.2 gi|386002462|ref|YP_005920761.1| - 0.015 15.4 29.4 1.1 9.2 6.5 4.5 1 1 1 2 2 2 0 Pectate lyase superfamily protein Pepsin-I3 PF06394.8 gi|386002462|ref|YP_005920761.1| - 1.8 8.3 4.0 6.2 6.5 0.2 2.9 2 1 1 3 3 3 0 Pepsin inhibitor-3-like repeated domain Sec61_beta PF03911.11 gi|386002463|ref|YP_005920762.1| - 2.3e-07 30.4 0.0 2.5e-07 30.3 0.0 1.0 1 0 0 1 1 1 1 Sec61beta family ParA PF10609.4 gi|386002464|ref|YP_005920763.1| - 9.9e-35 118.2 0.1 1.8e-34 117.4 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|386002464|ref|YP_005920763.1| - 9.1e-24 83.9 0.0 1.2e-23 83.5 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|386002464|ref|YP_005920763.1| - 2.2e-09 37.4 0.0 1.3e-07 31.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|386002464|ref|YP_005920763.1| - 6.7e-09 35.2 0.0 1.2e-08 34.3 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|386002464|ref|YP_005920763.1| - 1.5e-05 24.6 0.1 0.019 14.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.10 gi|386002464|ref|YP_005920763.1| - 7e-05 22.0 2.0 0.002 17.2 0.3 2.5 2 1 1 3 3 3 1 Anion-transporting ATPase ArgK PF03308.11 gi|386002464|ref|YP_005920763.1| - 9.3e-05 21.3 0.3 0.00014 20.7 0.2 1.2 1 0 0 1 1 1 1 ArgK protein APS_kinase PF01583.15 gi|386002464|ref|YP_005920763.1| - 0.0011 18.7 0.1 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase DUF1611 PF07755.6 gi|386002464|ref|YP_005920763.1| - 0.0016 17.1 0.4 0.0023 16.6 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) MobB PF03205.9 gi|386002464|ref|YP_005920763.1| - 0.002 17.8 0.1 0.004 16.8 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Fer4_NifH PF00142.13 gi|386002464|ref|YP_005920763.1| - 0.0024 17.0 0.0 0.0047 16.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|386002464|ref|YP_005920763.1| - 0.0061 15.6 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein Desulfoferrod_N PF06397.7 gi|386002464|ref|YP_005920763.1| - 0.019 14.3 0.2 0.019 14.3 0.2 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain AAA_10 PF12846.2 gi|386002464|ref|YP_005920763.1| - 0.023 14.1 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|386002464|ref|YP_005920763.1| - 0.044 13.2 0.1 0.081 12.3 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|386002464|ref|YP_005920763.1| - 0.058 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 NTPase LpxK PF02606.9 gi|386002464|ref|YP_005920763.1| - 0.062 12.2 0.0 0.078 11.9 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_25 PF13481.1 gi|386002464|ref|YP_005920763.1| - 0.079 12.3 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|386002464|ref|YP_005920763.1| - 0.097 13.4 0.1 0.19 12.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|386002464|ref|YP_005920763.1| - 0.1 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|386002464|ref|YP_005920763.1| - 0.11 12.0 0.3 0.18 11.3 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|386002464|ref|YP_005920763.1| - 0.14 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|386002464|ref|YP_005920763.1| - 0.16 11.1 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Radical_SAM PF04055.16 gi|386002465|ref|YP_005920764.1| - 6.2e-14 52.4 0.0 1.2e-13 51.6 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|386002465|ref|YP_005920764.1| - 0.0001 22.2 0.1 0.00058 19.8 0.1 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain TrmB PF01978.14 gi|386002465|ref|YP_005920764.1| - 0.00025 20.6 0.4 0.026 14.2 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|386002465|ref|YP_005920764.1| - 0.0024 17.6 2.0 0.05 13.4 0.4 2.9 2 0 0 2 2 2 1 Helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|386002465|ref|YP_005920764.1| - 0.0066 16.3 0.2 0.015 15.2 0.2 1.5 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein Fer4_12 PF13353.1 gi|386002465|ref|YP_005920764.1| - 0.0072 16.4 0.1 0.044 13.9 0.0 2.2 2 1 0 2 2 2 1 4Fe-4S single cluster domain HRDC PF00570.18 gi|386002465|ref|YP_005920764.1| - 0.016 14.9 0.1 0.095 12.4 0.0 2.3 3 0 0 3 3 3 0 HRDC domain TauE PF01925.14 gi|386002466|ref|YP_005920765.1| - 4.4e-24 85.2 34.1 5.4e-24 84.9 23.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE tRNA-synt_1 PF00133.17 gi|386002467|ref|YP_005920766.1| - 1.9e-197 656.9 0.0 2.3e-197 656.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|386002467|ref|YP_005920766.1| - 3.5e-35 121.0 0.0 6.1e-35 120.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|386002467|ref|YP_005920766.1| - 3.4e-27 95.1 1.4 1.5e-12 46.8 0.2 3.6 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|386002467|ref|YP_005920766.1| - 1.7e-05 24.1 0.0 0.00023 20.3 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|386002467|ref|YP_005920766.1| - 0.0011 17.7 0.1 0.0042 15.8 0.0 2.0 3 0 0 3 3 3 1 tRNA synthetases class I (K) CAT PF00302.13 gi|386002467|ref|YP_005920766.1| - 0.16 11.5 0.0 7.3 6.1 0.0 2.6 3 0 0 3 3 3 0 Chloramphenicol acetyltransferase DNase-RNase PF02577.9 gi|386002468|ref|YP_005920767.1| - 8.2e-36 122.2 0.1 9.3e-36 122.0 0.1 1.0 1 0 0 1 1 1 1 Bifunctional nuclease Peptidase_C25 PF01364.13 gi|386002469|ref|YP_005920768.1| - 9e-62 209.2 0.0 1.2e-61 208.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family C25 CARDB PF07705.6 gi|386002469|ref|YP_005920768.1| - 2.8e-07 30.5 0.0 6.1e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 CARDB DUF4159 PF13709.1 gi|386002469|ref|YP_005920768.1| - 0.0096 15.0 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4159) NosD PF05048.8 gi|386002470|ref|YP_005920769.1| - 1.3e-14 53.9 7.4 1.7e-14 53.5 5.1 1.1 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|386002470|ref|YP_005920769.1| - 2.4e-12 46.9 11.4 3.8e-12 46.2 7.8 1.5 1 1 0 1 1 1 1 Right handed beta helix region DUF1565 PF07602.6 gi|386002470|ref|YP_005920769.1| - 2.8e-09 36.5 9.5 1.6e-08 33.9 6.6 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.2 gi|386002470|ref|YP_005920769.1| - 0.02 15.0 10.4 0.18 11.8 7.2 2.0 1 1 0 1 1 1 0 Pectate lyase superfamily protein Pectinesterase PF01095.14 gi|386002470|ref|YP_005920769.1| - 0.055 12.0 0.2 0.087 11.3 0.1 1.3 1 0 0 1 1 1 0 Pectinesterase Lactamase_B_2 PF12706.2 gi|386002471|ref|YP_005920770.1| - 3.9e-32 111.3 0.0 5.4e-32 110.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|386002471|ref|YP_005920770.1| - 4.1e-19 68.9 0.1 4.2e-18 65.6 0.1 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|386002471|ref|YP_005920770.1| - 2.3e-05 23.7 0.0 4.2e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease Lactamase_B_3 PF13483.1 gi|386002471|ref|YP_005920770.1| - 0.029 14.1 0.0 0.049 13.3 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Ubiq_cyt_C_chap PF03981.7 gi|386002472|ref|YP_005920771.1| - 0.0046 16.8 1.3 0.03 14.1 0.2 2.1 1 1 1 2 2 2 1 Ubiquinol-cytochrome C chaperone Rbsn PF11464.3 gi|386002472|ref|YP_005920771.1| - 0.047 13.2 2.0 0.12 11.9 0.7 2.0 2 0 0 2 2 2 0 Rabenosyn Rab binding domain SurE PF01975.12 gi|386002473|ref|YP_005920772.1| - 3.7e-53 179.7 0.2 4.6e-53 179.4 0.2 1.1 1 0 0 1 1 1 1 Survival protein SurE DUF2202 PF09968.4 gi|386002475|ref|YP_005920774.1| - 1.2e-52 177.8 0.7 1.5e-52 177.4 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DOMON PF03351.12 gi|386002475|ref|YP_005920774.1| - 8.6e-29 99.9 0.0 1.3e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 DOMON domain EB_dh PF09459.5 gi|386002475|ref|YP_005920774.1| - 0.013 14.9 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 Ethylbenzene dehydrogenase 2TM PF13239.1 gi|386002476|ref|YP_005920775.1| - 3.9e-12 46.0 0.8 4.6e-12 45.8 0.5 1.1 1 0 0 1 1 1 1 2TM domain UPF0233 PF06781.7 gi|386002476|ref|YP_005920775.1| - 0.01 15.4 3.5 0.013 15.0 2.4 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0233) DUF1352 PF07086.7 gi|386002476|ref|YP_005920775.1| - 0.017 14.7 0.8 0.019 14.6 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1352) NnrU PF07298.6 gi|386002476|ref|YP_005920775.1| - 0.031 13.6 1.8 0.035 13.4 1.2 1.0 1 0 0 1 1 1 0 NnrU protein FliP PF00813.15 gi|386002476|ref|YP_005920775.1| - 0.033 13.8 0.4 0.043 13.5 0.3 1.1 1 0 0 1 1 1 0 FliP family GtrA PF04138.9 gi|386002476|ref|YP_005920775.1| - 0.062 13.2 0.6 0.077 12.9 0.4 1.1 1 0 0 1 1 1 0 GtrA-like protein AhpC-TSA PF00578.16 gi|386002477|ref|YP_005920776.1| - 7.3e-32 109.6 0.0 1e-31 109.2 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|386002477|ref|YP_005920776.1| - 2.6e-12 46.1 0.2 4.8e-12 45.3 0.1 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|386002477|ref|YP_005920776.1| - 3.1e-11 43.0 0.0 5.3e-11 42.2 0.0 1.4 2 0 0 2 2 2 1 Redoxin Cytochrom_B561 PF03188.11 gi|386002478|ref|YP_005920777.1| - 6.3e-08 32.5 3.1 6.3e-08 32.5 2.1 2.0 1 1 1 2 2 2 1 Eukaryotic cytochrome b561 DUF4079 PF13301.1 gi|386002478|ref|YP_005920777.1| - 2.2e-06 27.8 14.7 7.6e-05 22.7 3.9 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF4079) DUF420 PF04238.7 gi|386002478|ref|YP_005920777.1| - 0.029 14.3 3.1 0.13 12.2 2.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|386002478|ref|YP_005920777.1| - 0.03 14.4 12.2 0.17 12.0 0.6 2.6 2 1 1 3 3 3 0 Predicted membrane protein (DUF2306) PepSY_TM_3 PF13706.1 gi|386002478|ref|YP_005920777.1| - 0.4 10.1 12.6 0.13 11.7 1.4 3.3 3 0 0 3 3 3 0 PepSY-associated TM helix Ni_hydr_CYTB PF01292.15 gi|386002478|ref|YP_005920777.1| - 1.4 8.2 11.1 8.5 5.7 7.6 2.1 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 DUF3366 PF11846.3 gi|386002478|ref|YP_005920777.1| - 3.1 7.6 7.1 0.32 10.8 1.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3366) TspO_MBR PF03073.10 gi|386002479|ref|YP_005920778.1| - 1.5e-54 183.5 13.8 1.6e-54 183.4 9.5 1.0 1 0 0 1 1 1 1 TspO/MBR family Glyoxalase_4 PF13669.1 gi|386002480|ref|YP_005920779.1| - 1e-05 25.4 0.0 0.0013 18.7 0.0 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|386002480|ref|YP_005920779.1| - 0.0041 17.7 0.0 1.7 9.2 0.0 2.4 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.1 gi|386002480|ref|YP_005920779.1| - 0.058 13.3 0.0 7.4 6.4 0.0 2.4 2 1 0 2 2 2 0 Glyoxalase-like domain DUF829 PF05705.9 gi|386002480|ref|YP_005920779.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) MFS_1 PF07690.11 gi|386002481|ref|YP_005920780.1| - 1.7e-38 132.2 45.2 1.3e-20 73.4 6.5 2.1 1 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|386002481|ref|YP_005920780.1| - 2e-09 36.5 19.5 8.7e-06 24.5 0.2 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|386002481|ref|YP_005920780.1| - 3.6 5.5 26.9 0.33 8.9 7.7 4.4 3 2 1 4 4 4 0 Transmembrane secretion effector DUF87 PF01935.12 gi|386002482|ref|YP_005920781.1| - 6.8e-38 130.7 0.0 9.8e-38 130.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|386002482|ref|YP_005920781.1| - 1e-24 87.5 0.0 2.5e-24 86.2 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|386002482|ref|YP_005920781.1| - 6e-06 25.1 0.0 0.00083 18.0 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|386002482|ref|YP_005920781.1| - 2.3e-05 22.9 0.0 0.042 12.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|386002482|ref|YP_005920781.1| - 5.6e-05 22.7 0.2 0.0029 17.1 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zot PF05707.7 gi|386002482|ref|YP_005920781.1| - 0.00026 20.5 0.0 0.018 14.5 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) T4SS-DNA_transf PF02534.9 gi|386002482|ref|YP_005920781.1| - 0.0079 14.8 0.0 0.012 14.2 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer DEAD PF00270.24 gi|386002482|ref|YP_005920781.1| - 0.025 14.0 0.0 0.5 9.8 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase HAS-barrel PF09378.5 gi|386002482|ref|YP_005920781.1| - 0.054 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 HAS barrel domain SLH PF00395.15 gi|386002482|ref|YP_005920781.1| - 0.092 12.5 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 S-layer homology domain ResIII PF04851.10 gi|386002482|ref|YP_005920781.1| - 0.18 11.6 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF1325 PF07039.6 gi|386002482|ref|YP_005920781.1| - 0.18 11.4 0.0 0.33 10.5 0.0 1.3 1 0 0 1 1 1 0 SGF29 tudor-like domain Rhomboid PF01694.17 gi|386002483|ref|YP_005920782.1| - 2e-34 118.6 17.5 2e-34 118.6 12.2 1.5 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|386002483|ref|YP_005920782.1| - 1.1e-07 32.0 0.4 1.1e-07 32.0 0.3 2.4 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) TatD_DNase PF01026.16 gi|386002484|ref|YP_005920783.1| - 7.7e-69 231.7 0.0 8.7e-69 231.5 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_4 PF13147.1 gi|386002484|ref|YP_005920783.1| - 1.4e-07 31.8 0.1 3.6e-06 27.2 0.0 2.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_2 PF04909.9 gi|386002484|ref|YP_005920783.1| - 6.6e-06 25.8 0.2 1.6e-05 24.6 0.1 1.8 1 1 0 1 1 1 1 Amidohydrolase HMGL-like PF00682.14 gi|386002485|ref|YP_005920784.1| - 2.7e-71 239.9 2.9 4.4e-71 239.2 2.0 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|386002485|ref|YP_005920784.1| - 3.1e-30 104.6 3.5 6e-30 103.7 2.5 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Radical_SAM PF04055.16 gi|386002485|ref|YP_005920784.1| - 0.032 14.3 0.2 3.6 7.7 0.0 3.2 3 1 0 3 3 3 0 Radical SAM superfamily Lipase_GDSL_2 PF13472.1 gi|386002485|ref|YP_005920784.1| - 0.034 14.2 0.0 0.064 13.3 0.0 1.4 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family LacI PF00356.16 gi|386002485|ref|YP_005920784.1| - 0.073 12.6 2.1 21 4.8 0.0 3.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family FKBP_C PF00254.23 gi|386002486|ref|YP_005920785.1| - 7.2e-11 41.9 0.1 2.1e-10 40.4 0.0 1.9 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase PyrI PF01948.13 gi|386002487|ref|YP_005920786.1| - 1.3e-37 127.7 1.0 1.7e-37 127.3 0.7 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|386002487|ref|YP_005920786.1| - 8.2e-19 66.7 0.8 1.3e-18 66.1 0.6 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Dynamin_N PF00350.18 gi|386002487|ref|YP_005920786.1| - 0.044 13.6 0.3 0.16 11.7 0.1 1.7 1 1 1 2 2 2 0 Dynamin family OTCace_N PF02729.16 gi|386002488|ref|YP_005920787.1| - 4.6e-48 162.4 0.0 1.3e-47 161.0 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|386002488|ref|YP_005920787.1| - 7.4e-38 129.9 0.0 9.8e-38 129.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PDDEXK_1 PF12705.2 gi|386002489|ref|YP_005920788.1| - 6.8e-11 42.0 0.1 1.7e-10 40.6 0.0 1.6 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|386002489|ref|YP_005920788.1| - 4.2e-10 39.7 0.0 1e-07 32.0 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function DUF83 DUF911 PF06023.7 gi|386002489|ref|YP_005920788.1| - 1.4e-06 27.8 0.2 4.3e-06 26.1 0.1 1.6 1 1 0 1 1 1 1 Archaeal protein of unknown function (DUF911) RNA_pol_Rpc34 PF05158.7 gi|386002489|ref|YP_005920788.1| - 0.13 11.4 0.0 0.18 10.9 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit DPRP PF04244.8 gi|386002490|ref|YP_005920789.1| - 9.6e-49 165.9 0.0 1.5e-48 165.3 0.0 1.3 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|386002490|ref|YP_005920789.1| - 3.6e-12 46.0 0.0 5.8e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DUF3160 PF11369.3 gi|386002491|ref|YP_005920790.1| - 1.6e-234 779.9 0.0 1.8e-234 779.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) S-layer PF07752.6 gi|386002492|ref|YP_005920791.1| - 6.2e-98 327.1 10.6 4.6e-49 166.9 3.2 2.0 2 0 0 2 2 2 2 S-layer protein PrcB_C PF14343.1 gi|386002492|ref|YP_005920791.1| - 0.13 11.9 2.0 5.6 6.7 0.5 3.2 2 1 0 2 2 2 0 PrcB C-terminal Peptidase_M48 PF01435.13 gi|386002493|ref|YP_005920792.1| - 2.2e-41 141.8 0.0 3.2e-41 141.3 0.0 1.2 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|386002493|ref|YP_005920792.1| - 2.2e-07 30.1 1.0 3.9e-07 29.3 0.1 1.9 2 1 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|386002493|ref|YP_005920792.1| - 0.08 12.9 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily DUF2207 PF09972.4 gi|386002493|ref|YP_005920792.1| - 2.5 6.6 7.5 2.2 6.7 0.2 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) PspA_IM30 PF04012.7 gi|386002496|ref|YP_005920795.1| - 6.2e-26 91.1 30.9 7e-26 90.9 21.4 1.0 1 0 0 1 1 1 1 PspA/IM30 family Flagellin_C PF00700.16 gi|386002496|ref|YP_005920795.1| - 2.8e-05 24.1 8.6 0.17 12.0 0.0 3.9 3 1 1 4 4 4 2 Bacterial flagellin C-terminal helical region DUF1664 PF07889.7 gi|386002496|ref|YP_005920795.1| - 0.0014 18.3 10.8 0.0032 17.2 2.0 2.5 1 1 2 3 3 3 1 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.3 gi|386002496|ref|YP_005920795.1| - 0.0022 17.7 5.9 0.0022 17.7 4.1 3.5 1 1 3 4 4 4 1 TATA element modulatory factor 1 DNA binding AdoMet_Synthase PF01941.14 gi|386002496|ref|YP_005920795.1| - 0.021 13.3 0.6 0.027 13.0 0.4 1.2 1 0 0 1 1 1 0 S-adenosylmethionine synthetase (AdoMet synthetase) DivIC PF04977.10 gi|386002496|ref|YP_005920795.1| - 0.025 14.0 3.2 0.025 14.0 2.3 3.8 3 1 1 4 4 4 0 Septum formation initiator AAA_13 PF13166.1 gi|386002496|ref|YP_005920795.1| - 0.042 12.3 9.2 0.049 12.0 6.4 1.0 1 0 0 1 1 1 0 AAA domain DUF2146 PF10220.4 gi|386002496|ref|YP_005920795.1| - 0.051 11.5 5.3 0.062 11.2 3.6 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2146) Sec20 PF03908.8 gi|386002496|ref|YP_005920795.1| - 0.072 12.8 3.8 0.28 10.8 0.1 2.8 2 1 1 3 3 3 0 Sec20 COG5 PF10392.4 gi|386002496|ref|YP_005920795.1| - 0.13 12.1 7.4 0.22 11.4 4.2 2.1 1 1 1 2 2 2 0 Golgi transport complex subunit 5 DUF3584 PF12128.3 gi|386002496|ref|YP_005920795.1| - 0.24 8.6 23.3 0.02 12.2 11.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Snf7 PF03357.16 gi|386002496|ref|YP_005920795.1| - 0.32 10.3 20.4 1.2 8.4 11.8 2.4 2 1 0 2 2 1 0 Snf7 DUF1515 PF07439.6 gi|386002496|ref|YP_005920795.1| - 0.68 9.7 19.3 0.11 12.3 0.7 4.1 1 1 2 4 4 4 0 Protein of unknown function (DUF1515) DUF3456 PF11938.3 gi|386002496|ref|YP_005920795.1| - 0.76 9.7 5.8 0.23 11.4 1.2 2.0 1 1 1 2 2 2 0 TLR4 regulator and MIR-interacting MSAP DUF972 PF06156.8 gi|386002496|ref|YP_005920795.1| - 0.86 9.9 13.8 1.3 9.3 1.8 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF972) DUF743 PF05332.6 gi|386002496|ref|YP_005920795.1| - 1.3 9.0 7.5 11 6.0 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF743) DUF479 PF04336.7 gi|386002496|ref|YP_005920795.1| - 1.4 9.0 4.2 57 3.8 1.6 3.1 1 1 2 4 4 4 0 Protein of unknown function, DUF479 Baculo_PEP_C PF04513.7 gi|386002496|ref|YP_005920795.1| - 1.7 8.4 7.5 26 4.6 0.7 2.9 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fzo_mitofusin PF04799.8 gi|386002496|ref|YP_005920795.1| - 1.9 7.8 10.6 5.2 6.4 1.6 3.0 1 1 2 3 3 3 0 fzo-like conserved region BLOC1_2 PF10046.4 gi|386002496|ref|YP_005920795.1| - 2.3 8.4 13.6 8.2 6.6 0.6 3.4 1 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG6 PF04111.7 gi|386002496|ref|YP_005920795.1| - 2.4 7.0 20.7 0.58 9.1 11.6 1.9 1 1 1 2 2 2 0 Autophagy protein Apg6 ERM PF00769.14 gi|386002496|ref|YP_005920795.1| - 2.7 7.4 25.1 31 3.9 17.4 2.7 1 1 0 1 1 1 0 Ezrin/radixin/moesin family YlqD PF11068.3 gi|386002496|ref|YP_005920795.1| - 3.3 7.7 15.5 1.3 9.0 3.6 2.6 1 1 1 2 2 2 0 YlqD protein DUF342 PF03961.8 gi|386002496|ref|YP_005920795.1| - 3.5 5.9 11.4 3.3 6.0 1.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF342) COG2 PF06148.6 gi|386002496|ref|YP_005920795.1| - 4.3 7.2 15.9 2.2 8.1 0.1 3.7 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 FUSC PF04632.7 gi|386002496|ref|YP_005920795.1| - 4.4 5.6 12.0 5.4 5.3 8.3 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family V_ATPase_I PF01496.14 gi|386002496|ref|YP_005920795.1| - 6.1 4.5 11.8 11 3.7 8.1 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Spc7 PF08317.6 gi|386002496|ref|YP_005920795.1| - 6.9 5.2 16.7 1.2 7.6 4.5 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein Tropomyosin_1 PF12718.2 gi|386002496|ref|YP_005920795.1| - 7.6 6.3 24.5 6.7 6.5 14.4 2.4 1 1 2 3 3 3 0 Tropomyosin like DUF1993 PF09351.5 gi|386002496|ref|YP_005920795.1| - 8.2 6.3 9.8 13 5.7 6.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1993) Striatin PF08232.7 gi|386002496|ref|YP_005920795.1| - 8.8 6.6 16.1 0.44 10.8 4.6 2.2 1 1 1 2 2 2 0 Striatin family Helicase_C_2 PF13307.1 gi|386002498|ref|YP_005920797.1| - 2.6e-30 105.5 0.0 4.9e-30 104.6 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|386002498|ref|YP_005920797.1| - 1.3e-16 60.4 0.0 4.1e-16 58.8 0.0 1.8 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|386002498|ref|YP_005920797.1| - 4.7e-06 26.5 0.0 0.00024 20.9 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|386002498|ref|YP_005920797.1| - 0.00089 18.9 0.1 0.0023 17.6 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain DEAD PF00270.24 gi|386002498|ref|YP_005920797.1| - 0.0084 15.6 0.1 0.14 11.5 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|386002498|ref|YP_005920797.1| - 0.056 13.4 0.7 1.1 9.2 0.0 2.9 2 1 1 3 3 3 0 AAA ATPase domain AAA_22 PF13401.1 gi|386002498|ref|YP_005920797.1| - 0.065 13.3 0.2 5.2 7.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain DUF555 PF04475.7 gi|386002499|ref|YP_005920798.1| - 2.1e-45 152.8 0.0 2.6e-45 152.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zf-ribbon_3 PF13248.1 gi|386002499|ref|YP_005920798.1| - 0.041 13.1 0.1 0.072 12.3 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Dodecin PF07311.7 gi|386002499|ref|YP_005920798.1| - 0.072 13.1 0.1 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Dodecin Tex_N PF09371.5 gi|386002501|ref|YP_005920800.1| - 4.8e-68 228.2 0.1 6.2e-67 224.6 0.0 2.1 2 0 0 2 2 2 1 Tex-like protein N-terminal domain HHH_3 PF12836.2 gi|386002501|ref|YP_005920800.1| - 1.8e-28 98.2 0.0 3.8e-28 97.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif S1 PF00575.18 gi|386002501|ref|YP_005920800.1| - 5.6e-21 74.4 0.3 1.1e-20 73.4 0.2 1.5 1 0 0 1 1 1 1 S1 RNA binding domain HHH PF00633.18 gi|386002501|ref|YP_005920800.1| - 4.4e-09 35.5 0.1 0.0027 17.2 0.0 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif YqgF PF14639.1 gi|386002501|ref|YP_005920800.1| - 4.1e-07 29.6 0.0 7.9e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 Holliday-junction resolvase-like of SPT6 HHH_7 PF14635.1 gi|386002501|ref|YP_005920800.1| - 4.5e-05 23.4 0.0 8.8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|386002501|ref|YP_005920800.1| - 0.00036 20.3 0.0 0.00099 18.9 0.0 1.7 1 0 0 1 1 1 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.1 gi|386002501|ref|YP_005920800.1| - 0.0014 18.7 3.4 0.28 11.3 0.0 3.6 3 1 0 3 3 3 1 Helix-hairpin-helix domain CARD PF00619.16 gi|386002501|ref|YP_005920800.1| - 0.026 14.3 0.5 0.076 12.8 0.3 1.7 1 0 0 1 1 1 0 Caspase recruitment domain HHH_6 PF14579.1 gi|386002501|ref|YP_005920800.1| - 0.034 14.1 0.0 0.2 11.7 0.0 2.4 1 1 0 1 1 1 0 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|386002501|ref|YP_005920800.1| - 0.034 14.0 0.0 0.19 11.6 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif SUKH-4 PF14435.1 gi|386002501|ref|YP_005920800.1| - 0.034 13.8 0.0 0.088 12.5 0.0 1.6 1 0 0 1 1 1 0 SUKH-4 immunity protein T2SK PF03934.8 gi|386002501|ref|YP_005920800.1| - 0.13 11.3 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K HD PF01966.17 gi|386002502|ref|YP_005920801.1| - 1.4e-12 47.7 0.8 2.6e-12 46.8 0.5 1.4 1 0 0 1 1 1 1 HD domain ProSAAS PF07259.7 gi|386002502|ref|YP_005920801.1| - 0.028 13.9 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 ProSAAS precursor Peptidase_M24 PF00557.19 gi|386002503|ref|YP_005920802.1| - 3.4e-34 118.2 0.0 4.7e-34 117.7 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|386002503|ref|YP_005920802.1| - 1.2e-14 54.9 0.0 2.3e-14 54.0 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain CHASE PF03924.8 gi|386002504|ref|YP_005920803.1| - 0.0009 18.5 0.0 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 CHASE domain Cache_2 PF08269.6 gi|386002505|ref|YP_005920804.1| - 2.7e-19 68.9 0.0 2.7e-11 43.2 0.0 2.5 3 0 0 3 3 3 2 Cache domain COPI_assoc PF08507.5 gi|386002505|ref|YP_005920804.1| - 0.011 15.3 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 COPI associated protein DUF872 PF05915.7 gi|386002505|ref|YP_005920804.1| - 0.095 12.5 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) 5_3_exonuc_N PF02739.11 gi|386002506|ref|YP_005920805.1| - 0.053 12.8 0.0 0.14 11.5 0.0 1.6 1 1 1 2 2 2 0 5'-3' exonuclease, N-terminal resolvase-like domain DUF2202 PF09968.4 gi|386002507|ref|YP_005920806.1| - 1.4e-40 138.6 0.0 1.9e-40 138.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DOMON PF03351.12 gi|386002507|ref|YP_005920806.1| - 6e-19 68.2 0.0 8e-19 67.7 0.0 1.2 1 0 0 1 1 1 1 DOMON domain Rubrerythrin PF02915.12 gi|386002507|ref|YP_005920806.1| - 0.025 14.8 0.0 0.2 11.9 0.0 2.2 1 1 0 2 2 2 0 Rubrerythrin DUF3153 PF11353.3 gi|386002507|ref|YP_005920806.1| - 0.2 11.0 0.5 0.33 10.3 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3153) Methyltransf_12 PF08242.7 gi|386002509|ref|YP_005920808.1| - 3.9e-17 62.5 0.0 5.8e-17 61.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386002509|ref|YP_005920808.1| - 7e-17 61.6 0.0 1.2e-16 61.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386002509|ref|YP_005920808.1| - 2.1e-14 54.0 0.0 3.8e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386002509|ref|YP_005920808.1| - 1.4e-13 50.8 0.0 2.1e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386002509|ref|YP_005920808.1| - 6.6e-12 45.2 0.0 8.2e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386002509|ref|YP_005920808.1| - 1e-10 41.8 0.0 1.7e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386002509|ref|YP_005920808.1| - 1.2e-07 31.7 0.1 2.6e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|386002509|ref|YP_005920808.1| - 2.3e-07 30.3 0.0 4e-07 29.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|386002509|ref|YP_005920808.1| - 7.5e-07 28.5 0.0 1.5e-06 27.5 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|386002509|ref|YP_005920808.1| - 1.1e-05 24.6 0.0 1.6e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NNMT_PNMT_TEMT PF01234.12 gi|386002509|ref|YP_005920808.1| - 0.00018 20.5 0.0 0.00031 19.7 0.0 1.3 1 0 0 1 1 1 1 NNMT/PNMT/TEMT family TehB PF03848.9 gi|386002509|ref|YP_005920808.1| - 0.0012 18.0 0.0 0.0027 16.9 0.0 1.6 1 1 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_2 PF00891.13 gi|386002509|ref|YP_005920808.1| - 0.0054 15.9 0.0 0.0081 15.3 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_PK PF05891.7 gi|386002509|ref|YP_005920808.1| - 0.018 14.3 0.0 0.025 13.8 0.0 1.1 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase PCMT PF01135.14 gi|386002509|ref|YP_005920808.1| - 0.064 12.7 0.1 0.15 11.5 0.0 1.7 2 1 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|386002509|ref|YP_005920808.1| - 0.091 11.8 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NTP_transf_2 PF01909.18 gi|386002510|ref|YP_005920809.1| - 4.1e-13 49.4 0.6 5.1e-13 49.1 0.4 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.4 gi|386002510|ref|YP_005920809.1| - 0.075 12.5 0.5 0.11 12.0 0.3 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DUF86 PF01934.12 gi|386002511|ref|YP_005920810.1| - 1.3e-26 92.5 0.0 1.5e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 AAA_3 PF07726.6 gi|386002512|ref|YP_005920811.1| - 1e-06 28.3 0.0 3.9e-06 26.4 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|386002512|ref|YP_005920811.1| - 0.0015 18.2 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|386002512|ref|YP_005920811.1| - 0.067 12.9 0.2 0.29 10.9 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain GXGXG PF01493.14 gi|386002513|ref|YP_005920812.1| - 3.4e-23 81.7 52.3 2.2e-11 43.1 12.7 3.2 2 1 2 4 4 4 3 GXGXG motif VWA_2 PF13519.1 gi|386002514|ref|YP_005920813.1| - 7.3e-05 22.9 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|386002514|ref|YP_005920813.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain FMN_red PF03358.10 gi|386002515|ref|YP_005920814.1| - 6e-17 61.5 0.1 1.2e-16 60.5 0.1 1.5 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|386002515|ref|YP_005920814.1| - 1.3e-09 37.8 0.0 1.6e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.20 gi|386002515|ref|YP_005920814.1| - 6e-07 29.5 0.1 1.6e-05 24.8 0.1 2.1 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|386002515|ref|YP_005920814.1| - 4.7e-05 23.4 0.0 0.21 11.5 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|386002515|ref|YP_005920814.1| - 0.00027 20.3 0.0 0.00048 19.5 0.0 1.5 1 1 0 1 1 1 1 Flavodoxin YCII PF03795.9 gi|386002515|ref|YP_005920814.1| - 0.026 14.6 0.3 0.06 13.5 0.2 1.6 1 1 0 1 1 1 0 YCII-related domain Flavodoxin_3 PF12641.2 gi|386002515|ref|YP_005920814.1| - 0.039 13.3 0.0 2 7.8 0.0 2.2 1 1 1 2 2 2 0 Flavodoxin domain Rubrerythrin PF02915.12 gi|386002516|ref|YP_005920815.1| - 3.2e-30 105.2 6.0 4.1e-30 104.8 4.2 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|386002516|ref|YP_005920815.1| - 4e-08 33.1 0.5 5e-08 32.7 0.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain HypA PF01155.14 gi|386002516|ref|YP_005920815.1| - 0.0049 16.5 0.1 0.0098 15.5 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|386002516|ref|YP_005920815.1| - 0.076 12.6 1.4 0.55 9.9 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF892 PF05974.7 gi|386002516|ref|YP_005920815.1| - 0.087 12.6 0.8 0.88 9.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) Mrr_N PF14338.1 gi|386002516|ref|YP_005920815.1| - 0.12 12.4 0.5 2.3 8.3 0.1 2.6 3 0 0 3 3 3 0 Mrr N-terminal domain RNA_POL_M_15KD PF02150.11 gi|386002516|ref|YP_005920815.1| - 0.16 11.6 0.1 0.16 11.6 0.1 1.8 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF3615 PF12274.3 gi|386002516|ref|YP_005920815.1| - 0.18 12.1 1.4 1.6 9.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3615) Rubredoxin PF00301.15 gi|386002516|ref|YP_005920815.1| - 0.62 9.9 4.4 6.8 6.6 2.5 2.6 2 1 0 2 2 2 0 Rubredoxin DUF4379 PF14311.1 gi|386002516|ref|YP_005920815.1| - 5.2 6.9 6.6 18 5.2 3.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) Mrr_cat PF04471.7 gi|386002517|ref|YP_005920816.1| - 9.7e-10 38.2 0.0 1.6e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease HSDR_N_2 PF13588.1 gi|386002517|ref|YP_005920816.1| - 0.003 17.3 0.8 1.1 9.0 0.0 2.5 2 0 0 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) NTP_transf_2 PF01909.18 gi|386002518|ref|YP_005920817.1| - 0.00024 21.3 0.3 0.00029 21.0 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.4 gi|386002518|ref|YP_005920817.1| - 0.011 15.3 0.1 0.011 15.3 0.1 1.1 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG UPF0150 PF03681.10 gi|386002519|ref|YP_005920818.1| - 2.6e-20 71.7 0.0 3.2e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|386002519|ref|YP_005920818.1| - 0.0013 18.2 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) AcetylCoA_hyd_C PF13336.1 gi|386002520|ref|YP_005920819.1| - 1e-59 200.6 0.0 1.5e-59 200.1 0.0 1.3 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|386002520|ref|YP_005920819.1| - 5.7e-39 133.9 0.0 1.1e-38 133.0 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_3 PF13302.1 gi|386002520|ref|YP_005920819.1| - 7.3e-11 42.4 0.0 1.4e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|386002520|ref|YP_005920819.1| - 1.8e-10 40.6 0.4 4.2e-10 39.5 0.3 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|386002520|ref|YP_005920819.1| - 4e-07 30.1 0.0 6.7e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CoA_trans PF01144.18 gi|386002520|ref|YP_005920819.1| - 3.6e-05 23.0 0.0 0.31 10.1 0.0 2.9 3 0 0 3 3 3 2 Coenzyme A transferase Acetyltransf_8 PF13523.1 gi|386002520|ref|YP_005920819.1| - 6.6e-05 22.8 0.0 0.00014 21.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386002520|ref|YP_005920819.1| - 0.0016 18.1 0.1 0.0037 17.0 0.1 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|386002520|ref|YP_005920819.1| - 0.0016 18.5 0.0 0.0039 17.3 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|386002520|ref|YP_005920819.1| - 0.006 16.6 0.0 0.053 13.6 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DeoRC PF00455.17 gi|386002520|ref|YP_005920819.1| - 0.012 15.2 0.0 0.052 13.1 0.0 2.0 3 0 0 3 3 3 0 DeoR C terminal sensor domain VWA_2 PF13519.1 gi|386002521|ref|YP_005920820.1| - 1.2e-23 84.1 0.0 2.8e-23 82.9 0.0 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|386002521|ref|YP_005920820.1| - 1.3e-12 47.8 0.0 2.1e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|386002521|ref|YP_005920820.1| - 3e-05 23.9 0.3 0.0019 18.0 0.0 2.2 2 0 0 2 2 2 1 vWA found in TerF C terminus VWA_3 PF13768.1 gi|386002521|ref|YP_005920820.1| - 4.5e-05 23.1 0.0 0.00031 20.4 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain Citrate_synt PF00285.16 gi|386002522|ref|YP_005920821.1| - 5.4e-62 209.5 0.0 2.6e-33 115.2 0.0 2.0 2 0 0 2 2 2 2 Citrate synthase DDE_Tnp_IS66 PF03050.9 gi|386002523|ref|YP_005920822.1| - 3.9e-55 186.9 0.0 3.9e-55 186.9 0.0 1.7 2 0 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.2 gi|386002523|ref|YP_005920822.1| - 5.5e-07 29.4 2.4 1.4e-06 28.1 1.7 1.7 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.1 gi|386002523|ref|YP_005920822.1| - 0.00081 19.3 0.0 0.0026 17.7 0.0 1.9 1 0 0 1 1 1 1 DDE domain DZR PF12773.2 gi|386002523|ref|YP_005920822.1| - 0.0082 15.9 0.1 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 Double zinc ribbon Transposase_mut PF00872.13 gi|386002523|ref|YP_005920822.1| - 0.0091 14.5 0.0 2.1 6.8 0.0 2.4 2 0 0 2 2 2 2 Transposase, Mutator family zf-ribbon_3 PF13248.1 gi|386002523|ref|YP_005920822.1| - 0.027 13.6 1.8 3.2 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|386002523|ref|YP_005920822.1| - 0.031 13.9 1.2 6.7 6.4 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|386002523|ref|YP_005920822.1| - 0.083 12.5 1.0 0.45 10.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|386002523|ref|YP_005920822.1| - 0.1 11.7 0.6 12 5.2 0.1 2.6 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.1 gi|386002523|ref|YP_005920822.1| - 0.11 12.0 1.1 0.71 9.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF972 PF06156.8 gi|386002523|ref|YP_005920822.1| - 0.14 12.4 3.6 0.54 10.6 1.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF972) zinc_ribbon_2 PF13240.1 gi|386002523|ref|YP_005920822.1| - 0.17 11.4 1.0 6.9 6.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TMF_DNA_bd PF12329.3 gi|386002523|ref|YP_005920822.1| - 0.18 11.6 6.7 0.14 12.0 2.7 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DNA_ligase_ZBD PF03119.11 gi|386002523|ref|YP_005920822.1| - 0.18 11.5 2.6 8.8 6.1 0.2 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DivIC PF04977.10 gi|386002523|ref|YP_005920822.1| - 0.19 11.2 3.9 0.6 9.6 2.7 1.8 1 0 0 1 1 1 0 Septum formation initiator DivIVA PF05103.8 gi|386002523|ref|YP_005920822.1| - 0.25 11.4 3.1 0.28 11.2 0.8 2.0 2 0 0 2 2 2 0 DivIVA protein DUF737 PF05300.6 gi|386002523|ref|YP_005920822.1| - 0.42 10.5 5.0 0.73 9.7 3.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF737) DUF904 PF06005.7 gi|386002523|ref|YP_005920822.1| - 1.1 9.5 8.3 0.31 11.3 1.6 2.8 3 1 0 3 3 2 0 Protein of unknown function (DUF904) Cep57_CLD_2 PF14197.1 gi|386002523|ref|YP_005920822.1| - 5.8 6.9 9.6 2.3 8.1 1.3 3.0 3 0 0 3 3 3 0 Centrosome localisation domain of PPC89 Citrate_synt PF00285.16 gi|386002524|ref|YP_005920823.1| - 6e-41 140.3 0.0 6.6e-41 140.2 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase Transglut_core PF01841.14 gi|386002524|ref|YP_005920823.1| - 0.075 13.2 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like superfamily Alkyl_sulf_dimr PF14863.1 gi|386002525|ref|YP_005920824.1| - 9.9e-34 116.5 0.0 1.5e-33 116.0 0.0 1.3 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.22 gi|386002525|ref|YP_005920824.1| - 9.9e-15 54.6 1.2 2e-14 53.6 0.8 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Alkyl_sulf_C PF14864.1 gi|386002525|ref|YP_005920824.1| - 1e-10 41.6 0.0 2.3e-10 40.5 0.0 1.6 2 0 0 2 2 2 1 Alkyl sulfatase C-terminal Lactamase_B_2 PF12706.2 gi|386002525|ref|YP_005920824.1| - 0.00013 21.6 0.0 0.00025 20.6 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SCP2 PF02036.12 gi|386002525|ref|YP_005920824.1| - 0.059 13.6 0.0 0.17 12.1 0.0 1.7 1 1 0 1 1 1 0 SCP-2 sterol transfer family Lactamase_B_3 PF13483.1 gi|386002525|ref|YP_005920824.1| - 0.09 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain HAD PF12710.2 gi|386002526|ref|YP_005920825.1| - 3.8e-17 63.0 0.0 5.4e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|386002526|ref|YP_005920825.1| - 0.00099 19.3 0.0 0.0017 18.6 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|386002526|ref|YP_005920825.1| - 0.0018 18.7 0.0 0.1 12.9 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|386002526|ref|YP_005920825.1| - 0.11 11.9 0.0 11 5.5 0.0 2.1 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase TelA PF05816.6 gi|386002527|ref|YP_005920826.1| - 7.9e-77 258.1 12.0 1.1e-76 257.7 8.3 1.1 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) DUF148 PF02520.12 gi|386002527|ref|YP_005920826.1| - 0.11 12.2 0.3 0.11 12.2 0.2 3.0 3 1 0 3 3 3 0 Domain of unknown function DUF148 VWA PF00092.23 gi|386002528|ref|YP_005920827.1| - 1.4e-18 67.2 0.4 2.6e-18 66.3 0.3 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.1 gi|386002528|ref|YP_005920827.1| - 5.8e-15 55.8 0.1 1.3e-14 54.6 0.1 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain SBP_bac_11 PF13531.1 gi|386002528|ref|YP_005920827.1| - 9.4e-11 41.7 0.0 1.5e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein VWA_3 PF13768.1 gi|386002528|ref|YP_005920827.1| - 0.0009 18.9 0.0 0.0083 15.8 0.0 2.4 2 1 0 2 2 2 1 von Willebrand factor type A domain DUF2828 PF11443.3 gi|386002528|ref|YP_005920827.1| - 0.062 11.5 0.0 0.099 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2828) Terpene_synth_C PF03936.11 gi|386002529|ref|YP_005920828.1| - 0.075 12.2 0.9 0.16 11.1 0.5 1.6 1 1 0 1 1 1 0 Terpene synthase family, metal binding domain Sec34 PF04136.10 gi|386002529|ref|YP_005920828.1| - 0.12 12.0 3.2 0.83 9.3 2.2 2.1 1 1 0 1 1 1 0 Sec34-like family NPV_P10 PF05531.7 gi|386002529|ref|YP_005920828.1| - 1.8 8.8 5.0 22 5.3 0.7 2.6 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Sulfatase PF00884.18 gi|386002530|ref|YP_005920829.1| - 4.3e-88 295.4 0.0 5.8e-88 295.0 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|386002530|ref|YP_005920829.1| - 3.4e-05 23.3 0.0 0.00015 21.1 0.0 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|386002530|ref|YP_005920829.1| - 0.022 13.1 0.0 0.032 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Sulfatase PF00884.18 gi|386002531|ref|YP_005920830.1| - 2.7e-72 243.5 0.0 3.5e-72 243.2 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|386002531|ref|YP_005920830.1| - 4.1e-06 26.3 0.0 0.0031 16.8 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase_C PF14707.1 gi|386002531|ref|YP_005920830.1| - 0.00015 22.0 0.1 0.00043 20.5 0.1 1.7 1 1 0 1 1 1 1 C-terminal region of aryl-sulfatase Radical_SAM PF04055.16 gi|386002533|ref|YP_005920832.1| - 7.3e-13 49.0 0.0 1.2e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SEC-C PF02810.10 gi|386002533|ref|YP_005920832.1| - 3.6e-12 45.5 4.6 6.8e-12 44.6 3.2 1.5 1 0 0 1 1 1 1 SEC-C motif SPASM PF13186.1 gi|386002533|ref|YP_005920832.1| - 9.9e-12 45.0 0.1 2.5e-11 43.7 0.1 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|386002533|ref|YP_005920832.1| - 1.1e-05 25.5 0.0 2.6e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|386002533|ref|YP_005920832.1| - 6.7e-05 22.9 0.0 0.00016 21.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF772 PF05598.6 gi|386002534|ref|YP_005920833.1| - 2.3e-21 75.4 0.1 5.2e-21 74.3 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|386002534|ref|YP_005920833.1| - 4.3e-12 46.0 0.2 8e-12 45.1 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|386002534|ref|YP_005920833.1| - 1.4e-05 24.7 0.0 3.3e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease TPR_11 PF13414.1 gi|386002535|ref|YP_005920834.1| - 1.3e-30 104.8 6.0 1.1e-10 40.9 0.0 4.5 4 0 0 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|386002535|ref|YP_005920834.1| - 4.8e-29 98.7 18.6 1.8e-06 27.3 0.0 7.9 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386002535|ref|YP_005920834.1| - 1.9e-28 96.0 8.2 8.4e-06 25.3 0.0 7.5 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386002535|ref|YP_005920834.1| - 1.2e-17 63.6 3.0 1.5e-06 28.0 0.1 5.1 3 2 2 5 5 5 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386002535|ref|YP_005920834.1| - 2.3e-16 58.2 18.3 0.0021 17.7 0.1 7.4 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386002535|ref|YP_005920834.1| - 4.1e-15 55.9 0.0 0.0021 18.6 0.0 5.2 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386002535|ref|YP_005920834.1| - 8.4e-15 54.1 2.3 0.85 10.2 0.1 7.6 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386002535|ref|YP_005920834.1| - 1.1e-13 51.2 0.0 0.0011 19.2 0.0 4.6 3 1 2 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386002535|ref|YP_005920834.1| - 1.6e-13 49.6 3.6 0.049 13.8 0.0 6.5 6 0 0 6 6 6 3 Tetratricopeptide repeat DUF3883 PF13020.1 gi|386002535|ref|YP_005920834.1| - 5.4e-12 45.2 0.5 1.5e-11 43.8 0.3 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) TPR_14 PF13428.1 gi|386002535|ref|YP_005920834.1| - 2.3e-10 40.1 0.0 0.064 13.9 0.0 6.7 2 2 5 7 7 7 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386002535|ref|YP_005920834.1| - 1.7e-09 36.7 1.6 2.1 8.3 0.0 7.3 6 1 0 6 6 6 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|386002535|ref|YP_005920834.1| - 5.4e-09 36.0 7.9 0.027 14.5 0.3 4.2 2 2 3 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.1 gi|386002535|ref|YP_005920834.1| - 9e-07 28.6 4.2 0.08 12.8 0.2 4.2 3 1 1 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat TPR_9 PF13371.1 gi|386002535|ref|YP_005920834.1| - 5.5e-06 26.1 0.0 0.038 13.8 0.0 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|386002535|ref|YP_005920834.1| - 0.018 14.2 0.8 0.24 10.5 0.0 2.7 2 1 2 4 4 4 0 Coatomer epsilon subunit Sel1 PF08238.7 gi|386002535|ref|YP_005920834.1| - 0.078 13.6 2.0 1.6 9.5 0.0 3.4 4 0 0 4 4 3 0 Sel1 repeat TPR_10 PF13374.1 gi|386002535|ref|YP_005920834.1| - 0.11 12.5 0.1 45 4.1 0.0 4.3 5 0 0 5 5 4 0 Tetratricopeptide repeat CCDC66 PF15236.1 gi|386002536|ref|YP_005920835.1| - 0.0066 16.0 1.2 0.0072 15.9 0.8 1.1 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 66 PCP_red PF08369.5 gi|386002536|ref|YP_005920835.1| - 0.65 9.9 3.9 1.7 8.6 2.7 1.8 1 1 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit HSDR_N PF04313.9 gi|386002537|ref|YP_005920836.1| - 3.9e-19 69.1 0.1 1.7e-18 67.0 0.0 2.3 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|386002537|ref|YP_005920836.1| - 2.3e-13 50.4 1.6 2.3e-13 50.3 0.1 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|386002537|ref|YP_005920836.1| - 2.3e-09 36.9 0.1 6.6e-09 35.4 0.1 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase KorB PF08535.5 gi|386002537|ref|YP_005920836.1| - 0.034 14.2 0.0 0.27 11.3 0.0 2.6 3 0 0 3 3 3 0 KorB domain Virulence_RhuM PF13310.1 gi|386002538|ref|YP_005920837.1| - 1.2e-120 401.3 6.5 1.6e-120 400.9 4.5 1.1 1 0 0 1 1 1 1 Virulence protein RhuM family NADPH_Ox PF08414.5 gi|386002538|ref|YP_005920837.1| - 0.023 14.7 0.5 0.057 13.5 0.3 1.6 1 0 0 1 1 1 0 Respiratory burst NADPH oxidase Mrr_N PF14338.1 gi|386002538|ref|YP_005920837.1| - 0.037 14.1 2.0 0.12 12.4 0.0 2.7 3 0 0 3 3 3 0 Mrr N-terminal domain Methylase_S PF01420.14 gi|386002539|ref|YP_005920838.1| - 8e-10 38.9 0.0 0.00011 22.2 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.11 gi|386002540|ref|YP_005920839.1| - 9e-54 182.6 0.0 1.4e-53 182.0 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|386002540|ref|YP_005920839.1| - 1.6e-21 77.1 0.2 8.1e-21 74.8 0.1 2.3 2 0 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|386002540|ref|YP_005920839.1| - 3.6e-09 36.6 0.0 9.1e-09 35.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|386002540|ref|YP_005920839.1| - 0.00011 21.8 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|386002540|ref|YP_005920839.1| - 0.057 13.7 0.0 18 5.7 0.0 2.6 2 0 0 2 2 2 0 Eco57I restriction-modification methylase PIN_4 PF13638.1 gi|386002540|ref|YP_005920839.1| - 0.13 12.3 0.0 0.31 11.1 0.0 1.7 1 0 0 1 1 1 0 PIN domain DUF739 PF05339.6 gi|386002541|ref|YP_005920840.1| - 1.2e-30 106.1 0.0 1.7e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF739) GCHY-1 PF02649.9 gi|386002542|ref|YP_005920841.1| - 4.2e-90 301.7 0.3 4.8e-90 301.5 0.2 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.13 gi|386002542|ref|YP_005920841.1| - 0.0042 17.2 0.3 0.094 12.8 0.1 2.6 2 1 1 3 3 3 1 Dihydroneopterin aldolase DUF4167 PF13763.1 gi|386002542|ref|YP_005920841.1| - 0.013 15.4 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4167) Herpes_UL37_2 PF07413.6 gi|386002542|ref|YP_005920841.1| - 0.15 10.8 0.1 0.36 9.5 0.0 1.6 2 0 0 2 2 2 0 Betaherpesvirus immediate-early glycoprotein UL37 PTS_2-RNA PF01885.11 gi|386002543|ref|YP_005920842.1| - 5.6e-38 130.1 0.0 6.8e-38 129.8 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Prenyltransf PF01255.14 gi|386002544|ref|YP_005920843.1| - 7.5e-25 87.3 0.0 2.4e-24 85.7 0.0 1.7 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.11 gi|386002545|ref|YP_005920844.1| - 1.2e-65 220.9 14.5 1.2e-65 220.9 10.1 1.7 2 0 0 2 2 2 1 Integral membrane protein DUF92 Aminotran_1_2 PF00155.16 gi|386002547|ref|YP_005920846.1| - 1.1e-48 165.9 0.0 1.4e-48 165.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|386002547|ref|YP_005920846.1| - 0.033 13.3 0.0 0.049 12.7 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase SecD_SecF PF02355.11 gi|386002548|ref|YP_005920847.1| - 3.1e-16 59.1 10.6 6.2e-16 58.1 7.3 1.4 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|386002548|ref|YP_005920847.1| - 0.00045 19.2 0.1 0.0011 18.0 0.0 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|386002548|ref|YP_005920847.1| - 0.45 9.1 24.5 0.014 14.1 12.7 1.6 2 0 0 2 2 2 0 MMPL family SecD_SecF PF02355.11 gi|386002549|ref|YP_005920848.1| - 5.8e-33 113.6 8.8 5.8e-33 113.6 6.1 1.4 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|386002549|ref|YP_005920848.1| - 3.9e-06 25.7 0.0 8e-06 24.7 0.0 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|386002549|ref|YP_005920848.1| - 0.041 11.8 11.8 0.056 11.3 8.2 1.1 1 0 0 1 1 1 0 Patched family E1-E2_ATPase PF00122.15 gi|386002549|ref|YP_005920848.1| - 0.22 10.5 3.1 0.082 11.9 0.2 1.7 2 0 0 2 2 2 0 E1-E2 ATPase MMPL PF03176.10 gi|386002549|ref|YP_005920848.1| - 5.5 5.5 17.4 0.06 12.0 6.0 1.8 2 0 0 2 2 2 0 MMPL family Methyltransf_6 PF03737.10 gi|386002550|ref|YP_005920849.1| - 1.2e-37 129.1 1.0 1.2e-37 129.1 0.7 1.7 2 0 0 2 2 2 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|386002550|ref|YP_005920849.1| - 1.6e-23 83.3 5.5 3.9e-23 82.0 3.8 1.7 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.16 gi|386002550|ref|YP_005920849.1| - 3.6e-07 29.7 0.2 1e-06 28.1 0.0 1.8 1 1 1 2 2 2 1 Histidine biosynthesis protein HMGL-like PF00682.14 gi|386002550|ref|YP_005920849.1| - 4.4e-06 26.5 1.9 1.3e-05 24.9 0.2 2.1 1 1 0 2 2 2 1 HMGL-like NanE PF04131.9 gi|386002550|ref|YP_005920849.1| - 1.9e-05 23.7 2.9 5.3e-05 22.2 1.1 2.1 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|386002550|ref|YP_005920849.1| - 5.1e-05 22.4 2.8 8.9e-05 21.6 1.9 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG PEP_mutase PF13714.1 gi|386002550|ref|YP_005920849.1| - 7.7e-05 22.0 0.8 0.017 14.3 0.1 2.5 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase TMP-TENI PF02581.12 gi|386002550|ref|YP_005920849.1| - 8.4e-05 21.7 1.8 0.00031 19.8 0.1 2.6 2 1 1 3 3 3 1 Thiamine monophosphate synthase/TENI Peripla_BP_4 PF13407.1 gi|386002550|ref|YP_005920849.1| - 0.00079 18.8 1.1 0.0024 17.2 0.6 1.8 1 1 0 2 2 2 1 Periplasmic binding protein domain Dus PF01207.12 gi|386002550|ref|YP_005920849.1| - 0.0014 17.5 0.1 0.0025 16.7 0.1 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) DeoC PF01791.4 gi|386002550|ref|YP_005920849.1| - 0.0086 15.3 5.7 0.023 13.9 3.3 2.0 1 1 1 2 2 2 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|386002550|ref|YP_005920849.1| - 0.015 14.3 0.8 0.015 14.3 0.6 2.0 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase ADH_zinc_N PF00107.21 gi|386002550|ref|YP_005920849.1| - 0.023 14.2 6.0 1.8 8.1 0.3 3.9 2 1 1 3 3 3 0 Zinc-binding dehydrogenase Trp_syntA PF00290.15 gi|386002550|ref|YP_005920849.1| - 0.026 13.0 1.7 0.12 10.8 0.3 2.4 1 1 2 3 3 3 0 Tryptophan synthase alpha chain DUF561 PF04481.7 gi|386002550|ref|YP_005920849.1| - 0.032 13.1 0.2 0.1 11.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF561) PcrB PF01884.12 gi|386002550|ref|YP_005920849.1| - 0.092 11.9 3.8 0.073 12.3 0.3 2.4 2 1 1 3 3 3 0 PcrB family FMN_dh PF01070.13 gi|386002550|ref|YP_005920849.1| - 0.14 10.9 9.2 0.29 9.9 3.4 2.1 1 1 1 2 2 2 0 FMN-dependent dehydrogenase EAL PF00563.15 gi|386002550|ref|YP_005920849.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 EAL domain IMPDH PF00478.20 gi|386002550|ref|YP_005920849.1| - 0.22 10.3 9.4 0.14 11.0 1.1 2.4 1 1 1 2 2 2 0 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.14 gi|386002550|ref|YP_005920849.1| - 0.3 10.1 2.8 2.2 7.3 1.9 2.3 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DAP_epimerase PF01678.14 gi|386002551|ref|YP_005920850.1| - 1.8e-54 182.8 0.8 3.9e-31 107.4 0.0 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.11 gi|386002551|ref|YP_005920850.1| - 0.0014 17.9 0.0 0.056 12.6 0.0 2.3 1 1 1 2 2 2 2 Phenazine biosynthesis-like protein Pro_racemase PF05544.6 gi|386002551|ref|YP_005920850.1| - 0.0085 14.9 0.2 0.072 11.9 0.0 2.0 2 0 0 2 2 2 1 Proline racemase DHHA1 PF02272.14 gi|386002553|ref|YP_005920852.1| - 1.1e-13 50.6 9.1 1.6e-13 50.1 0.9 2.6 2 0 0 2 2 2 2 DHHA1 domain DHH PF01368.15 gi|386002553|ref|YP_005920852.1| - 1.1e-12 47.7 0.0 1.7e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 DHH family OrfB_IS605 PF01385.14 gi|386002554|ref|YP_005920853.1| - 3.3e-40 137.8 0.1 7.2e-40 136.7 0.0 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|386002554|ref|YP_005920853.1| - 6.1e-24 83.4 0.1 1.4e-23 82.3 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|386002554|ref|YP_005920853.1| - 8.2e-18 63.4 3.2 1.7e-17 62.4 2.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|386002554|ref|YP_005920853.1| - 0.0014 17.8 0.2 0.27 10.5 0.0 2.3 1 1 1 2 2 2 2 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|386002554|ref|YP_005920853.1| - 0.003 17.0 0.3 0.0049 16.3 0.2 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|386002554|ref|YP_005920853.1| - 0.0054 16.5 0.4 0.0093 15.7 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.10 gi|386002554|ref|YP_005920853.1| - 0.0066 15.8 1.9 0.065 12.6 0.1 2.9 3 0 0 3 3 3 1 RecR protein zinc_ribbon_2 PF13240.1 gi|386002554|ref|YP_005920853.1| - 0.069 12.6 0.6 5 6.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.22 gi|386002554|ref|YP_005920853.1| - 0.8 9.0 3.3 1.5 8.2 0.3 2.6 1 1 1 2 2 2 0 GATA zinc finger Dodecin PF07311.7 gi|386002555|ref|YP_005920854.1| - 2.5e-28 97.8 0.5 2.8e-28 97.7 0.4 1.0 1 0 0 1 1 1 1 Dodecin Robl_LC7 PF03259.12 gi|386002555|ref|YP_005920854.1| - 0.13 11.8 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 Roadblock/LC7 domain Thioredoxin PF00085.15 gi|386002556|ref|YP_005920855.1| - 8.6e-21 73.5 0.0 1e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|386002556|ref|YP_005920855.1| - 4.9e-08 33.1 0.2 8.1e-07 29.2 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|386002556|ref|YP_005920855.1| - 3.1e-06 27.2 0.1 2.4e-05 24.3 0.1 2.0 1 1 1 2 2 2 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|386002556|ref|YP_005920855.1| - 5.9e-06 26.0 0.0 9.5e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.1 gi|386002556|ref|YP_005920855.1| - 6.1e-05 23.0 0.0 0.0002 21.4 0.0 1.7 1 1 1 2 2 2 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|386002556|ref|YP_005920855.1| - 0.00073 19.2 0.0 0.00092 18.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family DUF2847 PF11009.3 gi|386002556|ref|YP_005920855.1| - 0.001 18.6 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2847) Thioredoxin_7 PF13899.1 gi|386002556|ref|YP_005920855.1| - 0.018 15.0 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like Redoxin PF08534.5 gi|386002556|ref|YP_005920855.1| - 0.019 14.4 0.0 0.025 14.1 0.0 1.2 1 0 0 1 1 1 0 Redoxin Glutaredoxin PF00462.19 gi|386002556|ref|YP_005920855.1| - 0.045 13.7 0.1 0.099 12.6 0.1 1.6 1 1 0 1 1 1 0 Glutaredoxin tRNA-synt_2c PF01411.14 gi|386002558|ref|YP_005920857.1| - 2.1e-123 412.5 0.0 2.8e-123 412.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|386002558|ref|YP_005920857.1| - 1.3e-13 50.5 0.6 3.8e-13 49.0 0.4 1.9 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|386002558|ref|YP_005920857.1| - 7.2e-08 32.0 9.9 1.3e-07 31.2 4.5 2.5 1 1 1 2 2 2 1 DHHA1 domain DUF504 PF04457.7 gi|386002559|ref|YP_005920858.1| - 1.1e-13 51.0 0.5 1.7e-13 50.4 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF504) Methyltransf_2 PF00891.13 gi|386002560|ref|YP_005920859.1| - 2.5e-15 56.3 0.0 4e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|386002560|ref|YP_005920859.1| - 3.9e-09 37.0 0.0 2.7e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386002560|ref|YP_005920859.1| - 2.5e-08 33.9 0.4 6.7e-08 32.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386002560|ref|YP_005920859.1| - 3.1e-08 33.5 0.0 5.1e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386002560|ref|YP_005920859.1| - 1.1e-05 25.8 0.0 4.3e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|386002560|ref|YP_005920859.1| - 1.6e-05 24.3 0.0 2.6e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_16 PF10294.4 gi|386002560|ref|YP_005920859.1| - 0.00017 21.0 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase AAA_19 PF13245.1 gi|386002560|ref|YP_005920859.1| - 0.022 14.5 0.2 0.077 12.7 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain Methyltransf_19 PF04672.7 gi|386002560|ref|YP_005920859.1| - 0.034 13.4 0.1 0.058 12.6 0.1 1.3 1 0 0 1 1 1 0 S-adenosyl methyltransferase HTH_20 PF12840.2 gi|386002560|ref|YP_005920859.1| - 0.035 13.9 0.1 0.38 10.6 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain DUF802 PF05650.6 gi|386002560|ref|YP_005920859.1| - 1 9.5 5.0 2.9 8.0 3.4 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF802) PEMT PF04191.8 gi|386002561|ref|YP_005920860.1| - 6.1e-21 74.5 0.5 7.8e-21 74.1 0.1 1.3 2 0 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.9 gi|386002561|ref|YP_005920860.1| - 5.1e-05 23.3 0.0 7.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1295 PF06966.7 gi|386002561|ref|YP_005920860.1| - 6.7e-05 22.3 0.0 8.6e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) NnrU PF07298.6 gi|386002561|ref|YP_005920860.1| - 0.0018 17.6 0.1 0.0023 17.3 0.1 1.1 1 0 0 1 1 1 1 NnrU protein ERG4_ERG24 PF01222.12 gi|386002561|ref|YP_005920860.1| - 0.034 12.6 0.0 0.047 12.2 0.0 1.2 1 0 0 1 1 1 0 Ergosterol biosynthesis ERG4/ERG24 family DUF1469 PF07332.6 gi|386002561|ref|YP_005920860.1| - 0.044 13.4 1.3 0.58 9.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF3040 PF11239.3 gi|386002561|ref|YP_005920860.1| - 0.15 12.1 1.8 2.5 8.1 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) LTD PF00932.14 gi|386002562|ref|YP_005920861.1| - 1.8e-23 82.8 0.5 2.3e-23 82.4 0.4 1.1 1 0 0 1 1 1 1 Lamin Tail Domain Glyoxalase_2 PF12681.2 gi|386002562|ref|YP_005920861.1| - 0.028 14.9 0.1 3.1 8.4 0.0 2.2 1 1 1 2 2 2 0 Glyoxalase-like domain LTD PF00932.14 gi|386002563|ref|YP_005920862.1| - 1.1e-16 60.9 0.3 1.4e-16 60.5 0.2 1.1 1 0 0 1 1 1 1 Lamin Tail Domain PQQ PF01011.16 gi|386002564|ref|YP_005920863.1| - 1.3e-36 122.2 18.8 1.4e-05 24.3 0.1 8.4 9 0 0 9 9 9 7 PQQ enzyme repeat PQQ_2 PF13360.1 gi|386002564|ref|YP_005920863.1| - 2.5e-34 118.8 7.0 1.7e-11 44.0 0.1 4.3 2 2 1 4 4 4 4 PQQ-like domain DOMON PF03351.12 gi|386002564|ref|YP_005920863.1| - 7.1e-26 90.5 0.0 1.1e-25 89.9 0.0 1.3 1 0 0 1 1 1 1 DOMON domain PQQ_3 PF13570.1 gi|386002564|ref|YP_005920863.1| - 4.3e-14 52.2 45.5 0.0034 17.5 0.0 10.4 8 3 0 8 8 8 5 PQQ-like domain Polyketide_cyc2 PF10604.4 gi|386002565|ref|YP_005920864.1| - 5.6e-14 52.4 0.5 6.7e-14 52.2 0.4 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|386002565|ref|YP_005920864.1| - 4.4e-07 30.0 0.0 5.1e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.15 gi|386002565|ref|YP_005920864.1| - 9.1e-06 25.6 0.0 9.9e-06 25.5 0.0 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF11 PF01345.13 gi|386002566|ref|YP_005920865.1| - 7e-09 35.6 0.1 0.003 17.5 0.0 2.7 2 0 0 2 2 2 2 Domain of unknown function DUF11 Lactamase_B PF00753.22 gi|386002567|ref|YP_005920866.1| - 2e-14 53.6 2.0 5.4e-14 52.2 1.4 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|386002567|ref|YP_005920866.1| - 7.8e-06 25.5 0.1 1.4e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|386002567|ref|YP_005920866.1| - 3.9e-05 23.4 0.0 5.8e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain zf-ribbon_3 PF13248.1 gi|386002568|ref|YP_005920867.1| - 0.00042 19.4 1.3 0.074 12.2 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|386002568|ref|YP_005920867.1| - 0.0099 15.6 0.7 3.1 7.6 0.1 2.6 3 0 0 3 3 3 1 Nin one binding (NOB1) Zn-ribbon like RNA_POL_M_15KD PF02150.11 gi|386002568|ref|YP_005920867.1| - 0.012 15.2 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|386002568|ref|YP_005920867.1| - 0.022 14.5 0.8 0.04 13.7 0.5 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.3 gi|386002568|ref|YP_005920867.1| - 0.029 14.2 2.7 0.37 10.7 0.2 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.1 gi|386002568|ref|YP_005920867.1| - 0.033 13.8 4.6 0.033 13.8 3.2 2.1 2 1 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|386002568|ref|YP_005920867.1| - 0.065 12.5 1.0 0.065 12.5 0.7 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|386002568|ref|YP_005920867.1| - 0.089 12.4 1.1 0.18 11.5 0.8 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|386002568|ref|YP_005920867.1| - 0.092 12.2 1.5 1.8 8.1 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|386002568|ref|YP_005920867.1| - 0.15 11.8 3.1 0.62 9.9 1.6 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain RecR PF02132.10 gi|386002568|ref|YP_005920867.1| - 0.17 11.3 1.6 15 5.1 0.1 2.5 2 0 0 2 2 2 0 RecR protein zf-NADH-PPase PF09297.6 gi|386002568|ref|YP_005920867.1| - 0.29 10.7 4.6 5.1 6.7 3.2 2.4 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|386002568|ref|YP_005920867.1| - 0.43 10.0 1.7 3.4 7.2 0.3 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|386002568|ref|YP_005920867.1| - 0.46 10.0 3.5 1.3 8.6 0.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|386002568|ref|YP_005920867.1| - 0.48 10.4 3.1 2 8.4 2.1 2.0 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.4 gi|386002568|ref|YP_005920867.1| - 0.76 9.5 5.1 2.1 8.1 0.3 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|386002568|ref|YP_005920867.1| - 0.78 9.5 3.4 2.6 7.8 2.3 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 PCMT PF01135.14 gi|386002569|ref|YP_005920868.1| - 8.7e-69 231.2 0.0 1e-68 231.0 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|386002569|ref|YP_005920868.1| - 4.5e-17 62.0 0.0 5.8e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386002569|ref|YP_005920868.1| - 4.6e-11 43.2 0.0 6.8e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386002569|ref|YP_005920868.1| - 2e-09 37.4 0.0 3e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|386002569|ref|YP_005920868.1| - 8.4e-09 35.2 0.0 1.1e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit MTS PF05175.9 gi|386002569|ref|YP_005920868.1| - 4.4e-07 29.4 0.0 6.1e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|386002569|ref|YP_005920868.1| - 7.4e-06 26.3 0.0 1.4e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|386002569|ref|YP_005920868.1| - 1.1e-05 24.6 0.0 1.4e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|386002569|ref|YP_005920868.1| - 2.8e-05 23.3 0.0 3.7e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_3 PF01596.12 gi|386002569|ref|YP_005920868.1| - 8.3e-05 21.7 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_25 PF13649.1 gi|386002569|ref|YP_005920868.1| - 0.00013 22.2 0.0 0.0002 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|386002569|ref|YP_005920868.1| - 0.00014 20.9 0.0 0.00019 20.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|386002569|ref|YP_005920868.1| - 0.00015 20.9 0.0 0.00021 20.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GidB PF02527.10 gi|386002569|ref|YP_005920868.1| - 0.00032 19.8 0.0 0.00038 19.6 0.0 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Fibrillarin PF01269.12 gi|386002569|ref|YP_005920868.1| - 0.0016 17.3 0.0 0.0025 16.7 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_23 PF13489.1 gi|386002569|ref|YP_005920868.1| - 0.0035 17.0 0.0 0.0075 15.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|386002569|ref|YP_005920868.1| - 0.0056 15.8 0.0 0.0068 15.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|386002569|ref|YP_005920868.1| - 0.012 15.3 0.0 0.025 14.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|386002569|ref|YP_005920868.1| - 0.056 14.2 0.0 0.087 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|386002569|ref|YP_005920868.1| - 0.071 12.6 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Met_10 PF02475.11 gi|386002569|ref|YP_005920868.1| - 0.1 12.1 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Metalloenzyme PF01676.13 gi|386002570|ref|YP_005920869.1| - 9.8e-84 280.6 0.0 1.1e-83 280.4 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.8 gi|386002570|ref|YP_005920869.1| - 1.3e-82 276.5 0.0 1.6e-82 276.1 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Sulfatase PF00884.18 gi|386002570|ref|YP_005920869.1| - 7.7e-06 25.3 0.0 1.8e-05 24.0 0.0 1.6 2 0 0 2 2 2 1 Sulfatase Phosphodiest PF01663.17 gi|386002570|ref|YP_005920869.1| - 3e-05 23.5 0.0 4.2e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|386002570|ref|YP_005920869.1| - 0.008 15.8 0.1 0.017 14.7 0.1 1.5 1 0 0 1 1 1 1 PglZ domain VIT1 PF01988.14 gi|386002571|ref|YP_005920870.1| - 3.3e-30 105.1 18.1 9.5e-29 100.4 12.5 2.0 1 1 0 1 1 1 1 VIT family Trp_oprn_chp PF09534.5 gi|386002571|ref|YP_005920870.1| - 1.1 8.8 7.9 0.73 9.4 0.1 2.2 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Peptidase_M20 PF01546.23 gi|386002572|ref|YP_005920871.1| - 5.1e-34 117.4 0.0 6.7e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|386002572|ref|YP_005920871.1| - 8e-23 80.3 0.0 1.6e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|386002572|ref|YP_005920871.1| - 0.024 14.4 0.1 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M28 MobB PF03205.9 gi|386002573|ref|YP_005920872.1| - 9.8e-17 60.9 0.0 1.1e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|386002573|ref|YP_005920872.1| - 0.003 17.0 0.1 0.0048 16.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Miro PF08477.8 gi|386002573|ref|YP_005920872.1| - 0.0067 16.9 0.0 0.0078 16.7 0.0 1.3 1 0 0 1 1 1 1 Miro-like protein FtsK_SpoIIIE PF01580.13 gi|386002573|ref|YP_005920872.1| - 0.033 13.6 0.2 0.067 12.6 0.1 1.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|386002573|ref|YP_005920872.1| - 0.033 14.1 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain TrwB_AAD_bind PF10412.4 gi|386002573|ref|YP_005920872.1| - 0.05 12.2 0.2 0.069 11.7 0.1 1.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Dynamin_N PF00350.18 gi|386002573|ref|YP_005920872.1| - 0.075 12.8 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Dynamin family AAA_14 PF13173.1 gi|386002573|ref|YP_005920872.1| - 0.12 12.2 0.3 0.18 11.6 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|386002573|ref|YP_005920872.1| - 0.14 12.0 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|386002573|ref|YP_005920872.1| - 0.15 11.5 0.2 0.2 11.1 0.2 1.1 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|386002573|ref|YP_005920872.1| - 0.17 11.5 0.6 0.26 10.9 0.3 1.5 1 1 0 2 2 2 0 NTPase Radical_SAM PF04055.16 gi|386002575|ref|YP_005920874.1| - 4e-11 43.3 0.1 2.8e-10 40.6 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily DUF35_N PF12172.3 gi|386002576|ref|YP_005920875.1| - 0.054 13.4 3.4 0.21 11.5 0.1 2.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNHCP PF12647.2 gi|386002576|ref|YP_005920875.1| - 0.08 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 RNHCP domain DapB_C PF05173.9 gi|386002577|ref|YP_005920876.1| - 3.2e-44 149.8 0.1 4.6e-44 149.3 0.1 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|386002577|ref|YP_005920876.1| - 8.1e-26 90.3 0.0 1.4e-25 89.6 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DHDPS PF00701.17 gi|386002578|ref|YP_005920877.1| - 1.1e-97 326.2 0.0 1.2e-97 326.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Ribosomal_S17e PF00833.13 gi|386002579|ref|YP_005920878.1| - 2.1e-12 46.8 0.2 2.3e-12 46.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 Meiotic_rec114 PF03525.9 gi|386002579|ref|YP_005920878.1| - 0.061 11.8 0.1 0.065 11.7 0.1 1.1 1 0 0 1 1 1 0 Meiotic recombination protein rec114 Phos_pyr_kin PF08543.7 gi|386002580|ref|YP_005920879.1| - 4.9e-79 265.0 0.1 6.2e-79 264.6 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|386002580|ref|YP_005920879.1| - 3.6e-51 172.9 0.0 1.2e-49 167.9 0.0 2.2 1 1 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|386002580|ref|YP_005920879.1| - 3.2e-09 36.3 1.5 5.3e-09 35.6 1.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Clathrin_H_link PF13838.1 gi|386002581|ref|YP_005920880.1| - 5.5e-06 26.1 8.0 0.47 10.3 0.0 5.0 5 0 0 5 5 5 4 Clathrin-H-link MerR PF00376.18 gi|386002581|ref|YP_005920880.1| - 0.11 12.1 0.0 52 3.5 0.0 3.4 3 0 0 3 3 3 0 MerR family regulatory protein DUF61 PF01886.11 gi|386002582|ref|YP_005920881.1| - 4.2e-40 136.6 0.4 4.8e-40 136.4 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 HD PF01966.17 gi|386002583|ref|YP_005920882.1| - 4.4e-12 46.0 2.1 7.9e-12 45.2 0.4 2.3 2 0 0 2 2 2 1 HD domain HDOD PF08668.7 gi|386002583|ref|YP_005920882.1| - 0.025 13.8 0.0 0.064 12.5 0.0 1.6 2 0 0 2 2 2 0 HDOD domain NosD PF05048.8 gi|386002585|ref|YP_005920884.1| - 4.6e-27 94.6 0.3 9.3e-27 93.6 0.2 1.4 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|386002585|ref|YP_005920884.1| - 6.3e-09 35.7 9.5 3.3e-08 33.4 6.6 1.9 1 1 0 1 1 1 1 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|386002585|ref|YP_005920884.1| - 0.11 12.5 1.8 1.7 8.7 1.2 2.2 1 1 1 2 2 2 0 Pectate lyase superfamily protein DeoC PF01791.4 gi|386002586|ref|YP_005920885.1| - 1.5e-56 191.3 0.1 2e-56 190.9 0.1 1.2 1 0 0 1 1 1 1 DeoC/LacD family aldolase Peripla_BP_4 PF13407.1 gi|386002586|ref|YP_005920885.1| - 0.013 14.8 0.1 0.032 13.5 0.0 1.6 2 0 0 2 2 2 0 Periplasmic binding protein domain PEP_mutase PF13714.1 gi|386002586|ref|YP_005920885.1| - 0.031 13.4 0.2 1.1 8.3 0.0 2.6 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase PC4 PF02229.11 gi|386002587|ref|YP_005920886.1| - 1e-08 34.2 0.2 1.3e-08 33.9 0.1 1.1 1 0 0 1 1 1 1 Transcriptional Coactivator p15 (PC4) GTP_EFTU PF00009.22 gi|386002589|ref|YP_005920888.1| - 4.8e-40 137.0 0.0 7.2e-40 136.4 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|386002589|ref|YP_005920888.1| - 4.3e-30 103.5 0.1 8.7e-30 102.6 0.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|386002589|ref|YP_005920888.1| - 1e-07 31.9 0.7 3.1e-07 30.4 0.5 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 Nop10p PF04135.7 gi|386002589|ref|YP_005920888.1| - 0.018 14.7 0.2 0.036 13.8 0.1 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family DZR PF12773.2 gi|386002589|ref|YP_005920888.1| - 0.023 14.5 0.6 0.048 13.4 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon PduV-EutP PF10662.4 gi|386002589|ref|YP_005920888.1| - 0.058 12.8 0.5 2.8 7.4 0.0 2.8 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Ras PF00071.17 gi|386002589|ref|YP_005920888.1| - 0.079 12.3 0.2 0.17 11.2 0.1 1.5 2 0 0 2 2 2 0 Ras family zf-ribbon_3 PF13248.1 gi|386002589|ref|YP_005920888.1| - 0.37 10.0 8.6 1 8.6 6.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|386002589|ref|YP_005920888.1| - 0.79 9.7 3.5 5 7.1 0.1 2.4 1 1 2 3 3 3 0 Zinc ribbon domain Fcf1 PF04900.7 gi|386002590|ref|YP_005920889.1| - 1.4e-08 34.7 0.0 1.9e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN PF01850.16 gi|386002590|ref|YP_005920889.1| - 6.8e-05 23.1 0.2 0.0012 19.1 0.2 2.0 1 1 0 1 1 1 1 PIN domain SHS2_Rpb7-N PF03876.12 gi|386002591|ref|YP_005920890.1| - 1.6e-18 66.6 0.0 2.6e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|386002591|ref|YP_005920890.1| - 2.5e-14 53.0 0.2 5.8e-14 51.9 0.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|386002591|ref|YP_005920890.1| - 0.092 12.9 0.3 0.8 9.9 0.2 2.0 1 1 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.8 gi|386002592|ref|YP_005920891.1| - 2.3e-14 53.0 0.1 2.9e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.10 gi|386002592|ref|YP_005920891.1| - 0.018 14.4 1.4 0.025 14.0 1.0 1.2 1 0 0 1 1 1 0 RecR protein zf-ribbon_3 PF13248.1 gi|386002592|ref|YP_005920891.1| - 0.076 12.2 1.0 0.59 9.4 0.1 2.0 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|386002592|ref|YP_005920891.1| - 0.12 11.7 1.1 0.26 10.6 0.1 2.0 2 1 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|386002592|ref|YP_005920891.1| - 0.32 10.9 2.6 7.8 6.5 1.8 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|386002592|ref|YP_005920891.1| - 0.99 9.2 4.1 5.8 6.8 2.9 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF359 PF04019.7 gi|386002593|ref|YP_005920892.1| - 1.1e-37 128.1 0.1 1.3e-37 127.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.14 gi|386002594|ref|YP_005920893.1| - 1.9e-24 85.2 0.2 2.4e-24 84.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF1198 PF06711.6 gi|386002594|ref|YP_005920893.1| - 0.078 12.7 0.0 0.099 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1198) Ribosomal_S27 PF01599.14 gi|386002595|ref|YP_005920894.1| - 1.1e-18 66.7 1.9 1.2e-18 66.5 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.1 gi|386002595|ref|YP_005920894.1| - 1.4e-05 24.6 0.6 0.061 13.0 0.0 2.1 2 0 0 2 2 2 2 Nudix N-terminal Ribosomal_L37e PF01907.14 gi|386002595|ref|YP_005920894.1| - 0.00042 20.0 1.6 0.00048 19.8 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|386002595|ref|YP_005920894.1| - 0.00054 19.7 0.6 0.00065 19.4 0.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon IBR PF01485.16 gi|386002595|ref|YP_005920894.1| - 0.004 17.0 0.1 0.004 17.0 0.1 1.1 1 0 0 1 1 1 1 IBR domain GCC2_GCC3 PF07699.8 gi|386002595|ref|YP_005920894.1| - 0.0079 15.7 1.0 0.0095 15.4 0.7 1.1 1 0 0 1 1 1 1 GCC2 and GCC3 DUF2082 PF09855.4 gi|386002595|ref|YP_005920894.1| - 0.011 15.5 3.6 0.2 11.5 0.3 2.5 2 1 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn_Tnp_IS1595 PF12760.2 gi|386002595|ref|YP_005920894.1| - 0.023 14.5 3.5 0.045 13.5 2.5 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF1936 PF09151.5 gi|386002595|ref|YP_005920894.1| - 0.024 14.1 1.8 0.14 11.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) A2L_zn_ribbon PF08792.5 gi|386002595|ref|YP_005920894.1| - 0.03 13.7 1.7 0.1 12.1 1.2 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|386002595|ref|YP_005920894.1| - 0.03 13.9 1.1 0.042 13.4 0.8 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|386002595|ref|YP_005920894.1| - 0.033 13.6 2.1 0.068 12.6 1.5 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit GFA PF04828.9 gi|386002595|ref|YP_005920894.1| - 0.04 13.8 1.4 0.23 11.4 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RNA_POL_M_15KD PF02150.11 gi|386002595|ref|YP_005920894.1| - 0.052 13.2 2.8 0.18 11.4 2.0 1.8 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit HypA PF01155.14 gi|386002595|ref|YP_005920894.1| - 0.053 13.2 0.4 0.06 13.0 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|386002595|ref|YP_005920894.1| - 0.058 13.1 0.5 0.076 12.7 0.3 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|386002595|ref|YP_005920894.1| - 0.11 11.7 6.0 0.37 10.0 4.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DUF1451 PF07295.6 gi|386002595|ref|YP_005920894.1| - 0.12 12.0 0.4 0.13 12.0 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zinc_ribbon_4 PF13717.1 gi|386002595|ref|YP_005920894.1| - 0.13 11.9 0.6 9.4 6.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF4100 PF13352.1 gi|386002595|ref|YP_005920894.1| - 0.15 11.5 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4100) zf-LITAF-like PF10601.4 gi|386002595|ref|YP_005920894.1| - 0.15 11.9 0.9 0.51 10.2 0.0 1.9 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-RING_3 PF14369.1 gi|386002595|ref|YP_005920894.1| - 0.16 11.9 2.5 0.32 11.0 0.3 2.0 1 1 1 2 2 2 0 zinc-finger zf-NADH-PPase PF09297.6 gi|386002595|ref|YP_005920894.1| - 0.29 10.6 4.5 2 8.0 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|386002595|ref|YP_005920894.1| - 0.53 10.0 3.1 2.3 7.9 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.6 gi|386002595|ref|YP_005920894.1| - 0.55 10.0 4.3 1 9.2 0.2 2.0 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like RRN7 PF11781.3 gi|386002595|ref|YP_005920894.1| - 0.6 9.6 2.9 11 5.5 0.2 2.1 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn-ribbon_8 PF09723.5 gi|386002595|ref|YP_005920894.1| - 0.81 9.6 3.6 8.2 6.4 0.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|386002595|ref|YP_005920894.1| - 1.2 8.8 3.5 9.4 5.9 0.1 2.2 2 1 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.9 gi|386002595|ref|YP_005920894.1| - 2.4 7.8 5.6 8.6 6.1 0.8 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.1 gi|386002595|ref|YP_005920894.1| - 2.6 7.6 8.4 80 2.9 5.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF3797 PF12677.2 gi|386002595|ref|YP_005920894.1| - 3.1 7.5 4.9 0.92 9.1 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TF_Zn_Ribbon PF08271.7 gi|386002595|ref|YP_005920894.1| - 4.7 6.6 5.8 19 4.6 4.0 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|386002595|ref|YP_005920894.1| - 4.8 7.2 6.8 5.7 7.0 0.7 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Band_7 PF01145.20 gi|386002596|ref|YP_005920895.1| - 1.2e-34 119.8 2.5 1.7e-34 119.3 1.7 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|386002596|ref|YP_005920895.1| - 5.2e-05 22.8 0.1 7.3e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 SPFH domain-Band 7 family NfeD PF01957.13 gi|386002597|ref|YP_005920896.1| - 3.9e-31 108.1 0.5 3.9e-31 108.1 0.3 3.0 4 0 0 4 4 4 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|386002597|ref|YP_005920896.1| - 0.0016 18.1 0.1 0.0027 17.4 0.1 1.3 1 0 0 1 1 1 1 Clp protease FMN_dh PF01070.13 gi|386002597|ref|YP_005920896.1| - 0.0032 16.3 0.0 0.0067 15.3 0.0 1.5 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Usp PF00582.21 gi|386002598|ref|YP_005920897.1| - 9.7e-18 64.7 2.1 1.1e-17 64.4 1.4 1.1 1 0 0 1 1 1 1 Universal stress protein family PP-binding_2 PF14573.1 gi|386002598|ref|YP_005920897.1| - 0.091 12.8 0.3 0.23 11.5 0.2 1.7 1 1 1 2 2 2 0 Acyl-carrier Nitro_FeMo-Co PF02579.12 gi|386002598|ref|YP_005920897.1| - 0.12 12.4 0.1 0.18 11.9 0.1 1.6 1 1 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor Pilus_CpaD PF09476.5 gi|386002598|ref|YP_005920897.1| - 0.13 11.6 0.1 0.17 11.3 0.1 1.1 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) NfeD PF01957.13 gi|386002599|ref|YP_005920898.1| - 7.5e-20 71.5 0.1 8.2e-20 71.4 0.1 1.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding RseC_MucC PF04246.7 gi|386002599|ref|YP_005920898.1| - 0.0076 15.8 0.4 0.62 9.6 0.0 2.1 2 0 0 2 2 2 2 Positive regulator of sigma(E), RseC/MucC DUF1129 PF06570.6 gi|386002599|ref|YP_005920898.1| - 0.029 13.7 0.1 0.032 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) TPR_11 PF13414.1 gi|386002600|ref|YP_005920899.1| - 1.8e-36 123.6 9.6 3e-11 42.8 0.1 5.7 4 2 2 6 6 6 4 TPR repeat TPR_1 PF00515.23 gi|386002600|ref|YP_005920899.1| - 3.8e-29 99.0 16.0 4.3e-07 29.2 0.0 9.4 9 1 0 9 9 9 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386002600|ref|YP_005920899.1| - 7e-25 84.9 12.8 0.00085 19.0 0.0 9.4 9 1 1 10 10 10 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386002600|ref|YP_005920899.1| - 9.4e-24 81.5 2.0 4.4e-06 26.4 0.0 6.6 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386002600|ref|YP_005920899.1| - 2.4e-16 59.8 0.6 3.2e-06 27.6 0.0 4.4 3 1 2 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386002600|ref|YP_005920899.1| - 5.1e-14 51.9 1.9 0.00091 19.1 0.0 4.7 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386002600|ref|YP_005920899.1| - 1.7e-11 43.0 22.7 0.0025 17.4 0.0 7.9 7 2 2 9 9 8 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|386002600|ref|YP_005920899.1| - 3.2e-10 39.9 2.8 0.19 11.8 0.0 4.4 4 0 0 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|386002600|ref|YP_005920899.1| - 7.8e-09 35.7 0.3 0.023 15.0 0.0 4.5 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386002600|ref|YP_005920899.1| - 3.6e-08 33.1 0.0 0.45 10.4 0.0 5.0 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386002600|ref|YP_005920899.1| - 3.8e-08 33.2 1.1 6.9 7.6 0.0 7.0 4 3 4 8 8 8 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|386002600|ref|YP_005920899.1| - 1.3e-07 30.8 0.1 0.028 13.2 0.0 3.9 3 1 1 4 4 4 3 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|386002600|ref|YP_005920899.1| - 7e-05 22.6 3.2 0.27 11.0 0.0 4.0 3 2 1 4 4 4 2 Domain of Unknown Function (DUF3856) TPR_15 PF13429.1 gi|386002600|ref|YP_005920899.1| - 0.00066 18.8 0.5 2.2 7.2 0.0 4.1 3 1 2 5 5 5 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386002600|ref|YP_005920899.1| - 0.00071 19.1 2.2 13 5.8 0.0 5.0 5 0 0 5 5 5 0 Tetratricopeptide repeat YfhO PF09586.5 gi|386002600|ref|YP_005920899.1| - 0.028 12.4 6.9 0.042 11.8 4.8 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO TPR_6 PF13174.1 gi|386002600|ref|YP_005920899.1| - 0.045 14.2 4.1 40 4.9 0.0 5.3 6 0 0 6 6 6 0 Tetratricopeptide repeat Peptidase_M15_4 PF13539.1 gi|386002600|ref|YP_005920899.1| - 0.11 12.9 0.4 2 8.9 0.0 2.9 2 1 1 3 3 3 0 D-alanyl-D-alanine carboxypeptidase TPR_21 PF09976.4 gi|386002600|ref|YP_005920899.1| - 0.22 11.4 6.0 1.7 8.5 0.2 3.2 4 0 0 4 4 4 0 Tetratricopeptide repeat Wzy_C PF04932.10 gi|386002600|ref|YP_005920899.1| - 0.29 10.9 6.2 0.11 12.2 0.5 2.1 1 1 1 2 2 2 0 O-Antigen ligase DUF1469 PF07332.6 gi|386002600|ref|YP_005920899.1| - 6.3 6.5 7.0 65 3.2 4.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) MCM PF00493.18 gi|386002601|ref|YP_005920900.1| - 6.9e-134 445.8 0.0 8.7e-134 445.4 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|386002601|ref|YP_005920900.1| - 4.6e-11 43.2 0.0 2.5e-10 40.8 0.0 2.3 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|386002601|ref|YP_005920900.1| - 5.3e-09 35.5 0.1 1.2e-06 27.8 0.0 2.5 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|386002601|ref|YP_005920900.1| - 1.4e-08 34.5 0.0 3.5e-08 33.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|386002601|ref|YP_005920900.1| - 0.00021 20.8 0.0 0.00084 18.9 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|386002601|ref|YP_005920900.1| - 0.0027 17.2 0.0 0.035 13.5 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain Zn-ribbon_8 PF09723.5 gi|386002601|ref|YP_005920900.1| - 0.24 11.3 4.3 0.5 10.3 3.0 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DUF424 PF04242.8 gi|386002602|ref|YP_005920901.1| - 7.6e-27 93.2 0.1 8.6e-27 93.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.8 gi|386002603|ref|YP_005920902.1| - 2.1e-47 161.2 0.0 2.5e-47 160.9 0.0 1.1 1 0 0 1 1 1 1 NMD3 family Zn-ribbon_8 PF09723.5 gi|386002603|ref|YP_005920902.1| - 0.005 16.7 7.7 0.058 13.3 0.2 3.4 3 0 0 3 3 3 2 Zinc ribbon domain DZR PF12773.2 gi|386002603|ref|YP_005920902.1| - 0.031 14.1 3.6 0.37 10.6 1.4 2.6 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|386002603|ref|YP_005920902.1| - 4.8 6.5 6.4 12 5.2 0.2 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Toprim_4 PF13662.1 gi|386002604|ref|YP_005920903.1| - 7.6e-10 38.6 0.3 2.9e-09 36.8 0.2 2.0 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|386002604|ref|YP_005920903.1| - 0.0001 22.1 0.1 0.00066 19.6 0.1 2.5 1 1 0 1 1 1 1 Toprim domain ANTAR PF03861.9 gi|386002604|ref|YP_005920903.1| - 0.094 12.3 0.2 0.33 10.5 0.0 1.9 2 0 0 2 2 2 0 ANTAR domain PTH2 PF01981.11 gi|386002605|ref|YP_005920904.1| - 4.4e-39 132.7 0.1 5e-39 132.5 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 PA PF02225.17 gi|386002605|ref|YP_005920904.1| - 0.078 12.6 0.1 0.092 12.4 0.0 1.3 1 0 0 1 1 1 0 PA domain TruD PF01142.13 gi|386002606|ref|YP_005920905.1| - 1.7e-106 356.0 0.0 1.9e-106 355.9 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF1743 PF08489.6 gi|386002607|ref|YP_005920906.1| - 2.6e-23 81.9 0.1 2.2e-21 75.7 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1743) TPP_enzyme_C PF02775.16 gi|386002608|ref|YP_005920907.1| - 1e-07 31.6 0.2 2.4e-07 30.4 0.1 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|386002608|ref|YP_005920907.1| - 0.0018 17.8 0.8 0.14 11.5 0.4 2.9 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Lactamase_B PF00753.22 gi|386002609|ref|YP_005920908.1| - 1.3e-11 44.5 0.4 2.1e-11 43.8 0.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|386002609|ref|YP_005920908.1| - 0.00092 18.8 0.0 0.0015 18.0 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TrkH PF02386.11 gi|386002610|ref|YP_005920909.1| - 5.7e-54 183.0 11.9 5.4e-41 140.3 1.9 3.3 3 0 0 3 3 3 3 Cation transport protein TrkH PF02386.11 gi|386002611|ref|YP_005920910.1| - 4.2e-52 176.8 16.5 1.2e-39 135.9 3.2 3.6 3 1 0 3 3 3 3 Cation transport protein HMGL-like PF00682.14 gi|386002612|ref|YP_005920911.1| - 1e-76 257.7 0.4 1.3e-76 257.3 0.2 1.2 1 0 0 1 1 1 1 HMGL-like Beta_helix PF13229.1 gi|386002613|ref|YP_005920912.1| - 6.4e-28 97.4 32.2 2.7e-20 72.7 11.6 2.3 1 1 1 2 2 2 2 Right handed beta helix region NosD PF05048.8 gi|386002613|ref|YP_005920912.1| - 5e-20 71.6 15.6 8.9e-20 70.8 10.6 1.6 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.2 gi|386002613|ref|YP_005920912.1| - 5.5e-07 29.9 7.4 8.8e-07 29.2 5.1 1.2 1 0 0 1 1 1 1 Pectate lyase superfamily protein DUF1565 PF07602.6 gi|386002613|ref|YP_005920912.1| - 1.5e-05 24.2 12.6 4.3e-05 22.7 8.8 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) Glu_cyclase_2 PF05096.7 gi|386002614|ref|YP_005920913.1| - 2.2e-82 276.0 0.0 2.9e-82 275.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine cyclotransferase PQQ_3 PF13570.1 gi|386002614|ref|YP_005920913.1| - 0.41 10.9 4.6 2.8 8.3 0.0 3.4 4 0 0 4 4 4 0 PQQ-like domain TrmB PF01978.14 gi|386002615|ref|YP_005920914.1| - 0.00048 19.7 0.0 0.00073 19.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|386002615|ref|YP_005920914.1| - 0.016 15.2 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|386002615|ref|YP_005920914.1| - 0.029 14.6 0.1 0.16 12.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF1216 PF06746.6 gi|386002615|ref|YP_005920914.1| - 0.062 13.0 0.0 0.082 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1216) PadR PF03551.9 gi|386002615|ref|YP_005920914.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FeoA PF04023.9 gi|386002616|ref|YP_005920915.1| - 1.6e-14 53.6 0.0 1.8e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 FeoA domain ETF_alpha PF00766.14 gi|386002616|ref|YP_005920915.1| - 0.051 13.2 0.1 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein FAD-binding domain His_biosynth PF00977.16 gi|386002617|ref|YP_005920916.1| - 6.9e-79 264.3 0.0 7.9e-79 264.1 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|386002617|ref|YP_005920916.1| - 9.7e-08 31.1 0.0 0.00065 18.6 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|386002617|ref|YP_005920916.1| - 7.5e-06 25.3 0.9 0.054 12.6 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.9 gi|386002617|ref|YP_005920916.1| - 1e-05 24.7 0.1 0.0023 17.0 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|386002617|ref|YP_005920916.1| - 1e-05 24.6 0.1 0.017 14.0 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|386002617|ref|YP_005920916.1| - 0.00019 20.7 0.2 0.00048 19.4 0.2 1.6 1 1 0 1 1 1 1 PcrB family TMP-TENI PF02581.12 gi|386002617|ref|YP_005920916.1| - 0.00043 19.4 0.3 0.21 10.7 0.1 2.1 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|386002617|ref|YP_005920916.1| - 0.0033 16.3 0.1 1.9 7.3 0.0 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TRI9 PF08195.6 gi|386002617|ref|YP_005920916.1| - 0.027 14.1 0.5 0.086 12.4 0.0 2.0 2 0 0 2 2 2 0 TRI9 protein Trp_syntA PF00290.15 gi|386002617|ref|YP_005920916.1| - 0.14 10.6 0.1 0.21 10.1 0.1 1.2 1 0 0 1 1 1 0 Tryptophan synthase alpha chain G3P_antiterm PF04309.7 gi|386002617|ref|YP_005920916.1| - 0.14 11.1 0.2 0.6 9.1 0.1 1.8 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator GATase PF00117.23 gi|386002618|ref|YP_005920917.1| - 6.2e-32 110.5 0.0 7e-32 110.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|386002618|ref|YP_005920917.1| - 3.1e-08 33.4 0.0 5.5e-08 32.6 0.0 1.3 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|386002618|ref|YP_005920917.1| - 1.1e-07 31.5 0.0 1.5e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|386002618|ref|YP_005920917.1| - 5e-06 26.1 0.0 0.0018 17.7 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.19 gi|386002618|ref|YP_005920917.1| - 0.036 13.5 0.0 0.065 12.6 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family Fer4_7 PF12838.2 gi|386002619|ref|YP_005920918.1| - 5.3e-09 36.3 12.4 0.00014 22.1 1.2 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386002619|ref|YP_005920918.1| - 5e-08 32.6 14.5 5.8e-08 32.4 6.5 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386002619|ref|YP_005920918.1| - 2.2e-07 30.1 5.5 1.3e-05 24.5 0.4 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|386002619|ref|YP_005920918.1| - 2.1e-06 27.8 6.7 2.1e-06 27.8 4.6 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386002619|ref|YP_005920918.1| - 2e-05 24.3 8.7 2e-05 24.3 6.1 2.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386002619|ref|YP_005920918.1| - 3.2e-05 24.5 12.0 0.029 15.1 2.8 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|386002619|ref|YP_005920918.1| - 6.2e-05 22.6 20.4 0.00022 20.9 0.6 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|386002619|ref|YP_005920918.1| - 6.5e-05 22.6 1.6 6.5e-05 22.6 1.1 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|386002619|ref|YP_005920918.1| - 0.0007 19.5 10.6 0.0007 19.5 7.3 2.6 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386002619|ref|YP_005920918.1| - 0.0016 18.7 13.9 0.042 14.2 1.0 3.7 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386002619|ref|YP_005920918.1| - 0.0053 16.9 2.6 0.0053 16.9 1.8 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain zf-C2HC_2 PF13913.1 gi|386002619|ref|YP_005920918.1| - 0.015 14.9 0.0 0.015 14.9 0.0 3.1 3 0 0 3 3 3 0 zinc-finger of a C2HC-type FYVE PF01363.16 gi|386002619|ref|YP_005920918.1| - 0.016 15.0 0.2 0.016 15.0 0.1 2.4 2 1 0 2 2 1 0 FYVE zinc finger Fer4_3 PF12798.2 gi|386002619|ref|YP_005920918.1| - 0.034 14.7 3.1 0.034 14.7 2.2 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|386002619|ref|YP_005920918.1| - 0.22 11.9 0.7 0.22 11.9 0.5 3.1 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|386002619|ref|YP_005920918.1| - 1.1 9.6 19.8 8.6 6.8 8.1 3.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-C2H2 PF00096.21 gi|386002619|ref|YP_005920918.1| - 3.9 8.0 0.0 3.9 8.0 0.0 3.3 4 0 0 4 4 3 0 Zinc finger, C2H2 type Fer4_11 PF13247.1 gi|386002620|ref|YP_005920919.1| - 3.2e-14 52.6 11.7 3.2e-14 52.6 8.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002620|ref|YP_005920919.1| - 1.4e-12 46.8 31.2 8.6e-06 25.4 0.6 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386002620|ref|YP_005920919.1| - 1.7e-11 44.3 27.7 4.1e-06 27.0 7.0 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386002620|ref|YP_005920919.1| - 1.5e-10 40.1 35.3 6.4e-08 31.8 0.9 5.6 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|386002620|ref|YP_005920919.1| - 5.9e-10 38.4 12.8 1.9e-06 27.4 1.2 4.4 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386002620|ref|YP_005920919.1| - 1.4e-08 34.3 27.3 0.0025 17.5 6.6 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386002620|ref|YP_005920919.1| - 1.3e-06 28.1 34.3 0.0015 18.7 1.5 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|386002620|ref|YP_005920919.1| - 6.5e-06 26.3 30.7 0.0062 16.7 8.6 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386002620|ref|YP_005920919.1| - 6.6e-06 25.8 27.6 0.0002 21.1 5.9 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386002620|ref|YP_005920919.1| - 8.6e-06 25.9 43.6 0.0059 17.0 3.2 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|386002620|ref|YP_005920919.1| - 0.00026 21.2 28.4 0.22 11.9 0.9 4.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002620|ref|YP_005920919.1| - 0.00061 19.7 29.5 0.0028 17.6 13.9 3.7 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386002620|ref|YP_005920919.1| - 0.0071 17.0 28.8 0.1 13.3 1.4 4.5 2 1 3 5 5 5 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|386002620|ref|YP_005920919.1| - 1.8 9.1 30.5 12 6.5 7.8 3.7 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|386002620|ref|YP_005920919.1| - 5.8 7.4 29.3 5.5 7.4 6.6 4.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.17 gi|386002621|ref|YP_005920920.1| - 1.9e-88 297.0 0.0 2.2e-88 296.8 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|386002621|ref|YP_005920920.1| - 6.8e-29 99.8 0.0 1.6e-28 98.7 0.0 1.6 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|386002621|ref|YP_005920920.1| - 2e-15 56.2 0.2 4.3e-15 55.2 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain zf-A20 PF01754.11 gi|386002621|ref|YP_005920920.1| - 0.1 12.1 1.3 0.31 10.6 0.9 1.7 1 0 0 1 1 1 0 A20-like zinc finger GXGXG PF01493.14 gi|386002622|ref|YP_005920921.1| - 5.8e-37 126.6 5.3 7.9e-37 126.2 3.6 1.2 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.12 gi|386002623|ref|YP_005920922.1| - 5.4e-137 456.6 0.0 5.4e-137 456.6 0.0 1.4 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.9 gi|386002623|ref|YP_005920922.1| - 9.4e-10 38.2 0.0 0.00015 21.1 0.0 2.4 2 1 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.13 gi|386002623|ref|YP_005920922.1| - 3e-08 32.9 5.0 5.6e-08 32.0 1.4 2.5 3 1 0 3 3 3 1 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|386002623|ref|YP_005920922.1| - 3.4e-07 29.4 6.0 1.2e-06 27.6 2.3 2.7 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4_9 PF13187.1 gi|386002623|ref|YP_005920922.1| - 3.3e-06 27.2 19.5 6e-06 26.4 8.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386002623|ref|YP_005920922.1| - 1.2e-05 24.9 22.9 0.00059 19.5 9.3 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386002623|ref|YP_005920922.1| - 3.7e-05 23.4 8.6 3.7e-05 23.4 6.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386002623|ref|YP_005920922.1| - 6.2e-05 23.3 23.8 0.00032 21.0 8.7 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain NMO PF03060.10 gi|386002623|ref|YP_005920922.1| - 0.00011 21.4 1.3 0.00017 20.8 0.9 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4 PF00037.22 gi|386002623|ref|YP_005920922.1| - 0.00021 20.7 2.3 0.00021 20.7 1.6 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386002623|ref|YP_005920922.1| - 0.00029 21.5 0.5 0.00029 21.5 0.4 3.5 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain DHO_dh PF01180.16 gi|386002623|ref|YP_005920922.1| - 0.00031 19.8 0.2 0.0029 16.6 0.1 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Fer4_8 PF13183.1 gi|386002623|ref|YP_005920922.1| - 0.0044 17.0 18.1 0.011 15.6 7.2 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain His_biosynth PF00977.16 gi|386002623|ref|YP_005920922.1| - 0.02 14.1 0.8 0.033 13.4 0.1 1.6 2 0 0 2 2 2 0 Histidine biosynthesis protein Fer4_17 PF13534.1 gi|386002623|ref|YP_005920922.1| - 0.021 15.1 15.2 0.46 10.8 0.1 3.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386002623|ref|YP_005920922.1| - 0.85 9.6 23.4 0.053 13.4 1.6 3.8 3 0 0 3 3 3 0 4Fe-4S binding domain GATase_2 PF00310.16 gi|386002624|ref|YP_005920923.1| - 9.7e-26 90.3 0.0 1.2e-25 90.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|386002624|ref|YP_005920923.1| - 9e-13 48.3 0.0 4.5e-12 46.0 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|386002624|ref|YP_005920923.1| - 1.2e-09 38.0 0.0 1.8e-05 24.4 0.0 2.4 2 0 0 2 2 2 2 Glutamine amidotransferase domain DUF1469 PF07332.6 gi|386002625|ref|YP_005920924.1| - 0.21 11.3 3.5 0.24 11.1 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF998 PF06197.8 gi|386002625|ref|YP_005920924.1| - 0.27 10.4 9.6 0.67 9.2 6.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF998) HSDR_N PF04313.9 gi|386002626|ref|YP_005920925.1| - 1.2e-14 54.4 0.0 9.2e-11 41.8 0.0 3.0 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.1 gi|386002626|ref|YP_005920925.1| - 1.9e-11 43.7 0.9 1.1e-10 41.2 0.0 2.7 3 1 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) SeqA PF03925.8 gi|386002626|ref|YP_005920925.1| - 1.9e-05 24.4 1.5 0.00022 20.9 0.0 2.5 3 0 0 3 3 3 1 SeqA protein DUF772 PF05598.6 gi|386002627|ref|YP_005920926.1| - 2.3e-21 75.4 0.1 5.2e-21 74.3 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|386002627|ref|YP_005920926.1| - 4.3e-12 46.0 0.2 8e-12 45.1 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|386002627|ref|YP_005920926.1| - 1.4e-05 24.7 0.0 3.3e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease MDMPI_C PF07398.6 gi|386002628|ref|YP_005920927.1| - 0.0075 16.8 1.1 0.013 16.0 0.8 1.4 1 0 0 1 1 1 1 MDMPI C-terminal domain P-II PF00543.17 gi|386002629|ref|YP_005920928.1| - 4.9e-36 123.2 0.1 5.5e-36 123.1 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.16 gi|386002630|ref|YP_005920929.1| - 3.3e-115 384.7 39.8 4.2e-115 384.4 27.6 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family DUF3007 PF11460.3 gi|386002630|ref|YP_005920929.1| - 4.8 7.3 6.3 18 5.4 1.6 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) Gln-synt_C PF00120.19 gi|386002631|ref|YP_005920930.1| - 9.6e-95 316.6 0.0 1.2e-94 316.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|386002631|ref|YP_005920930.1| - 1.2e-30 104.9 0.0 1.3e-29 101.5 0.0 2.5 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain GTP_EFTU PF00009.22 gi|386002632|ref|YP_005920931.1| - 2.9e-33 114.8 0.0 5.6e-32 110.7 0.0 2.6 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|386002632|ref|YP_005920931.1| - 6.7e-23 80.6 0.3 2.7e-22 78.6 0.1 2.1 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|386002632|ref|YP_005920931.1| - 7e-13 48.0 5.2 7e-13 48.0 3.6 2.6 3 0 0 3 3 3 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|386002632|ref|YP_005920931.1| - 1.2e-09 38.1 0.0 1.2e-09 38.1 0.0 3.4 2 1 1 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|386002632|ref|YP_005920931.1| - 6.3e-06 26.1 0.0 1.8e-05 24.6 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|386002632|ref|YP_005920931.1| - 0.036 14.5 0.0 0.085 13.3 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|386002632|ref|YP_005920931.1| - 0.054 13.2 0.1 0.15 11.7 0.1 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Dynamin_N PF00350.18 gi|386002632|ref|YP_005920931.1| - 0.068 12.9 0.1 2.7 7.7 0.0 2.9 3 0 0 3 3 3 0 Dynamin family PduV-EutP PF10662.4 gi|386002632|ref|YP_005920931.1| - 0.081 12.4 0.3 0.51 9.8 0.0 2.5 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|386002632|ref|YP_005920931.1| - 0.086 12.3 0.0 0.36 10.3 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NDK PF00334.14 gi|386002633|ref|YP_005920932.1| - 1.7e-55 186.4 0.0 1.9e-55 186.3 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|386002634|ref|YP_005920933.1| - 1e-17 63.7 0.8 1.2e-17 63.5 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|386002634|ref|YP_005920933.1| - 2e-06 27.3 2.6 2.8e-06 26.8 1.8 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|386002634|ref|YP_005920933.1| - 0.014 15.2 2.0 0.017 14.9 1.4 1.2 1 0 0 1 1 1 0 YHS domain SerH PF06873.6 gi|386002634|ref|YP_005920933.1| - 0.019 13.6 0.1 0.02 13.5 0.1 1.0 1 0 0 1 1 1 0 Cell surface immobilisation antigen SerH DUF3268 PF11672.3 gi|386002634|ref|YP_005920933.1| - 0.021 14.8 0.4 0.023 14.7 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) DUF2175 PF09943.4 gi|386002634|ref|YP_005920933.1| - 0.042 13.8 0.4 0.046 13.7 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) DUF581 PF04570.9 gi|386002634|ref|YP_005920933.1| - 0.046 13.0 4.5 0.093 12.0 3.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF581) Arc_trans_TRASH PF08394.5 gi|386002634|ref|YP_005920933.1| - 0.088 12.9 3.0 0.17 12.0 2.1 1.5 1 1 0 1 1 1 0 Archaeal TRASH domain Zn_ribbon_recom PF13408.1 gi|386002634|ref|YP_005920933.1| - 0.12 12.6 2.5 0.14 12.4 1.8 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF329 PF03884.9 gi|386002634|ref|YP_005920933.1| - 0.18 11.3 2.2 0.91 9.1 1.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF329) RPAP2_Rtr1 PF04181.8 gi|386002634|ref|YP_005920933.1| - 0.21 11.6 1.4 0.3 11.2 1.0 1.4 1 1 0 1 1 1 0 Rtr1/RPAP2 family zf-C4_ClpX PF06689.8 gi|386002634|ref|YP_005920933.1| - 0.42 10.1 4.6 0.69 9.4 3.2 1.6 1 1 0 1 1 1 0 ClpX C4-type zinc finger Ribosomal_S28e PF01200.13 gi|386002635|ref|YP_005920934.1| - 1.7e-30 104.5 0.2 1.8e-30 104.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|386002636|ref|YP_005920935.1| - 1.7e-25 88.3 0.3 2e-25 88.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|386002636|ref|YP_005920935.1| - 0.013 15.2 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 PELOTA RNA binding domain Pterin_bind PF00809.17 gi|386002638|ref|YP_005920937.1| - 8.5e-13 48.1 0.2 2.7e-12 46.5 0.0 2.0 2 1 0 2 2 2 1 Pterin binding enzyme DUF4346 PF14251.1 gi|386002638|ref|YP_005920937.1| - 8.1e-09 35.2 0.0 2.1e-08 33.9 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4346) HEPN PF05168.9 gi|386002639|ref|YP_005920938.1| - 0.016 15.0 1.3 0.018 14.8 0.9 1.1 1 0 0 1 1 1 0 HEPN domain DUF4224 PF13986.1 gi|386002639|ref|YP_005920938.1| - 0.025 14.1 1.2 0.053 13.0 0.6 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4224) DUF2368 PF10166.4 gi|386002639|ref|YP_005920938.1| - 0.12 11.9 1.3 0.18 11.4 0.9 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2368) Lantibiotic_a PF14867.1 gi|386002639|ref|YP_005920938.1| - 0.16 11.2 0.1 0.35 10.1 0.0 1.6 2 0 0 2 2 2 0 Lantibiotic alpha Endonuc-EcoRV PF09233.6 gi|386002640|ref|YP_005920939.1| - 0.031 13.6 0.1 0.045 13.1 0.1 1.2 1 0 0 1 1 1 0 Restriction endonuclease EcoRV Amidohydro_1 PF01979.15 gi|386002640|ref|YP_005920939.1| - 0.058 13.0 0.0 0.059 13.0 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase family DUF2299 PF10061.4 gi|386002641|ref|YP_005920940.1| - 1.8e-19 69.5 0.0 2.1e-19 69.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) GATase_7 PF13537.1 gi|386002642|ref|YP_005920941.1| - 1.6e-24 86.0 0.0 2.4e-24 85.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|386002642|ref|YP_005920941.1| - 2.5e-24 85.6 0.0 2.9e-17 62.4 0.0 3.0 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|386002642|ref|YP_005920941.1| - 1e-22 80.5 0.0 1.9e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|386002642|ref|YP_005920941.1| - 7.5e-10 38.5 0.1 1.9e-09 37.3 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|386002642|ref|YP_005920941.1| - 7.2e-08 31.4 0.0 3.2e-06 26.0 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.14 gi|386002643|ref|YP_005920942.1| - 1.5e-24 85.5 12.6 1.6e-24 85.4 8.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|386002643|ref|YP_005920942.1| - 0.021 14.6 2.0 0.028 14.2 1.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|386002643|ref|YP_005920942.1| - 0.037 13.2 4.8 0.12 11.6 3.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2HC5 PF06221.8 gi|386002643|ref|YP_005920942.1| - 0.11 12.2 1.3 0.17 11.6 0.9 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type HypA PF01155.14 gi|386002643|ref|YP_005920942.1| - 0.13 11.9 0.8 0.14 11.8 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family GCC2_GCC3 PF07699.8 gi|386002643|ref|YP_005920942.1| - 0.19 11.3 3.7 0.4 10.3 2.5 1.6 1 1 0 1 1 1 0 GCC2 and GCC3 zinc_ribbon_2 PF13240.1 gi|386002643|ref|YP_005920942.1| - 0.73 9.4 4.6 8.6 5.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|386002643|ref|YP_005920942.1| - 1.2 8.7 6.5 4.3 7.0 0.4 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.1 gi|386002643|ref|YP_005920942.1| - 2.9 7.5 7.7 4.3 6.9 0.4 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn_Tnp_IS1595 PF12760.2 gi|386002643|ref|YP_005920942.1| - 2.9 7.7 6.4 8.5 6.2 4.5 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain YhfH PF14149.1 gi|386002643|ref|YP_005920942.1| - 3.9 7.3 7.3 4 7.3 0.4 2.2 1 1 1 2 2 2 0 YhfH-like protein UPF0547 PF10571.4 gi|386002643|ref|YP_005920942.1| - 5.3 6.8 7.8 25 4.6 0.1 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 DUF2688 PF10892.3 gi|386002643|ref|YP_005920942.1| - 7.8 6.2 6.1 13 5.5 4.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) LSM PF01423.17 gi|386002644|ref|YP_005920943.1| - 1.2e-22 79.2 0.3 1.3e-22 79.1 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|386002644|ref|YP_005920943.1| - 0.025 14.4 0.0 0.033 14.1 0.0 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain PUA PF01472.15 gi|386002645|ref|YP_005920944.1| - 4.3e-18 64.8 0.7 6.3e-18 64.2 0.5 1.3 1 0 0 1 1 1 1 PUA domain DUF4013 PF13197.1 gi|386002646|ref|YP_005920945.1| - 7.4e-05 22.1 15.7 7.4e-05 22.1 10.9 2.9 1 1 2 3 3 3 2 Protein of unknown function (DUF4013) Glucan_synthase PF02364.10 gi|386002646|ref|YP_005920945.1| - 0.39 8.5 1.7 0.56 7.9 0.1 1.8 2 0 0 2 2 2 0 1,3-beta-glucan synthase component Tmemb_cc2 PF10267.4 gi|386002646|ref|YP_005920945.1| - 5.9 5.3 6.4 0.4 9.2 0.4 1.8 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein Potass_KdpF PF09604.5 gi|386002647|ref|YP_005920946.1| - 3.6 7.5 8.2 0.63 9.9 3.2 1.6 2 0 0 2 2 2 0 F subunit of K+-transporting ATPase (Potass_KdpF) TrkA_C PF02080.16 gi|386002648|ref|YP_005920947.1| - 6.5e-29 99.3 0.1 2.8e-13 49.2 0.0 2.4 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|386002648|ref|YP_005920947.1| - 2.4e-11 43.9 15.6 2.8e-06 27.6 3.3 2.3 2 0 0 2 2 2 2 PhoU domain Cupin_6 PF12852.2 gi|386002648|ref|YP_005920947.1| - 0.00013 21.6 0.0 0.26 10.8 0.0 2.3 2 0 0 2 2 2 2 Cupin Dicistro_VP4 PF11492.3 gi|386002648|ref|YP_005920947.1| - 0.29 11.1 1.6 1.3 9.1 0.3 2.2 2 0 0 2 2 2 0 Cricket paralysis virus, VP4 Adenosine_kin PF04008.9 gi|386002649|ref|YP_005920948.1| - 1e-71 239.4 0.0 1.2e-71 239.2 0.0 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Amidohydro_4 PF13147.1 gi|386002650|ref|YP_005920949.1| - 1.1e-31 110.9 3.0 1.4e-31 110.5 2.1 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|386002650|ref|YP_005920949.1| - 2.4e-20 73.4 0.0 6.6e-20 72.0 0.0 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|386002650|ref|YP_005920949.1| - 7.3e-13 48.1 0.7 2e-12 46.7 0.2 2.0 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|386002650|ref|YP_005920949.1| - 4.4e-09 36.0 0.0 1.2e-05 24.7 0.0 3.0 2 1 0 2 2 2 2 Amidohydrolase family HSP20 PF00011.16 gi|386002651|ref|YP_005920950.1| - 2.4e-12 46.6 0.0 3.1e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|386002651|ref|YP_005920950.1| - 0.0025 18.3 0.0 0.0049 17.3 0.0 1.4 1 1 0 1 1 1 1 CS domain DUF4139 PF13598.1 gi|386002652|ref|YP_005920951.1| - 6.5e-24 84.8 0.1 4e-15 55.9 0.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4139) DUF4140 PF13600.1 gi|386002652|ref|YP_005920951.1| - 2.1e-08 34.5 1.7 4.3e-08 33.5 0.4 2.1 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) GDE_N_bis PF14742.1 gi|386002652|ref|YP_005920951.1| - 0.0047 16.3 0.1 0.02 14.2 0.0 1.9 2 0 0 2 2 2 1 N-terminal domain of (some) glycogen debranching enzymes tRNA-synt_1d PF00750.14 gi|386002653|ref|YP_005920952.1| - 1e-48 165.9 0.0 1.4e-48 165.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|386002653|ref|YP_005920952.1| - 6.8e-30 103.4 0.0 2.4e-29 101.7 0.0 1.9 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|386002653|ref|YP_005920952.1| - 2.7e-08 34.2 0.0 6.7e-08 32.9 0.0 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|386002653|ref|YP_005920952.1| - 1.7e-07 30.3 0.0 0.0014 17.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|386002653|ref|YP_005920952.1| - 0.00023 19.9 0.0 0.088 11.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|386002653|ref|YP_005920952.1| - 0.026 12.5 0.0 0.038 12.0 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) Trp_syntA PF00290.15 gi|386002655|ref|YP_005920954.1| - 2.2e-85 285.2 0.0 2.6e-85 285.0 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|386002655|ref|YP_005920954.1| - 3.5e-06 26.4 0.2 3.4e-05 23.1 0.1 2.0 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|386002655|ref|YP_005920954.1| - 2.4e-05 23.7 0.0 3.8e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.9 gi|386002655|ref|YP_005920954.1| - 0.008 15.1 0.1 0.017 14.1 0.1 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|386002655|ref|YP_005920954.1| - 0.035 13.1 1.7 0.037 13.0 0.2 1.8 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG IMPDH PF00478.20 gi|386002655|ref|YP_005920954.1| - 0.058 12.2 0.0 1.4 7.7 0.0 2.2 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|386002655|ref|YP_005920954.1| - 0.088 11.7 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase TGT PF01702.13 gi|386002655|ref|YP_005920954.1| - 0.18 11.0 0.0 0.33 10.1 0.0 1.4 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase PALP PF00291.20 gi|386002656|ref|YP_005920955.1| - 5.4e-33 114.5 1.2 7.1e-33 114.1 0.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|386002657|ref|YP_005920956.1| - 1.7e-52 178.0 0.0 2e-52 177.7 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.14 gi|386002657|ref|YP_005920956.1| - 0.008 15.7 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.13 gi|386002657|ref|YP_005920956.1| - 0.018 13.8 0.0 0.028 13.2 0.0 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|386002657|ref|YP_005920956.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein DHO_dh PF01180.16 gi|386002657|ref|YP_005920956.1| - 0.12 11.2 0.0 0.18 10.6 0.0 1.3 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase GATase PF00117.23 gi|386002658|ref|YP_005920957.1| - 2e-31 108.9 0.0 2.1e-31 108.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|386002658|ref|YP_005920957.1| - 1.4e-14 54.0 0.1 1.7e-13 50.5 0.1 1.9 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|386002659|ref|YP_005920958.1| - 1.2e-93 313.1 0.0 4e-90 301.6 0.0 3.0 3 0 0 3 3 3 2 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|386002659|ref|YP_005920958.1| - 3e-29 101.8 0.1 2e-27 95.9 0.0 2.9 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|386002660|ref|YP_005920959.1| - 3.1e-32 111.7 0.0 3.5e-32 111.5 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DeoC PF01791.4 gi|386002660|ref|YP_005920959.1| - 0.013 14.8 2.3 4.3 6.5 1.6 2.9 1 1 0 1 1 1 0 DeoC/LacD family aldolase TMP-TENI PF02581.12 gi|386002660|ref|YP_005920959.1| - 0.043 12.9 0.1 0.095 11.8 0.1 1.7 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI DUF3606 PF12244.3 gi|386002660|ref|YP_005920959.1| - 0.051 13.2 0.4 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3606) His_biosynth PF00977.16 gi|386002660|ref|YP_005920959.1| - 0.11 11.7 0.1 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein NMO PF03060.10 gi|386002660|ref|YP_005920959.1| - 0.25 10.4 4.2 0.39 9.8 2.9 1.6 1 1 0 1 1 1 0 Nitronate monooxygenase Glycos_transf_3 PF00591.16 gi|386002661|ref|YP_005920960.1| - 7.9e-92 307.2 0.0 1.2e-91 306.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|386002661|ref|YP_005920960.1| - 3.2e-17 61.8 0.6 6.9e-17 60.7 0.4 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF4412 PF14371.1 gi|386002662|ref|YP_005920961.1| - 1.4 9.4 6.8 0.28 11.7 0.3 2.9 2 2 0 2 2 2 0 Domain of unknown function (DUF4412) LPAM_1 PF08139.7 gi|386002662|ref|YP_005920961.1| - 2.6 8.4 5.0 5.8 7.3 3.5 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site GDE_C PF06202.9 gi|386002663|ref|YP_005920962.1| - 4.9e-114 380.8 0.0 6.2e-114 380.5 0.0 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|386002663|ref|YP_005920962.1| - 3.7e-64 216.0 0.0 4.8e-64 215.6 0.0 1.1 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.8 gi|386002663|ref|YP_005920962.1| - 0.0071 15.1 0.0 0.012 14.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Glyco_hydro_63 PF03200.11 gi|386002663|ref|YP_005920962.1| - 0.19 9.5 0.0 0.26 9.0 0.0 1.1 1 0 0 1 1 1 0 Mannosyl oligosaccharide glucosidase Glyco_hydro_57 PF03065.10 gi|386002664|ref|YP_005920963.1| - 5.6e-60 203.1 0.0 1.8e-59 201.4 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|386002664|ref|YP_005920963.1| - 0.075 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase Acetyltransf_9 PF13527.1 gi|386002665|ref|YP_005920964.1| - 1.5e-17 63.6 0.1 2.3e-17 63.0 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|386002665|ref|YP_005920964.1| - 0.002 18.1 0.5 0.0047 16.9 0.2 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|386002665|ref|YP_005920964.1| - 0.0031 17.2 0.0 0.027 14.1 0.0 2.2 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|386002665|ref|YP_005920964.1| - 0.0087 16.1 0.2 0.017 15.2 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain KaiC PF06745.8 gi|386002666|ref|YP_005920965.1| - 4.8e-47 159.9 0.2 5.8e-47 159.7 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|386002666|ref|YP_005920965.1| - 4.3e-06 26.2 0.0 7.2e-06 25.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain MEDS PF14417.1 gi|386002666|ref|YP_005920965.1| - 0.0055 15.7 0.0 0.0081 15.2 0.0 1.2 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain IstB_IS21 PF01695.12 gi|386002666|ref|YP_005920965.1| - 0.0073 15.7 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF2075 PF09848.4 gi|386002666|ref|YP_005920965.1| - 0.0079 15.2 0.0 0.01 14.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|386002666|ref|YP_005920965.1| - 0.015 14.5 0.6 0.26 10.4 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_14 PF13173.1 gi|386002666|ref|YP_005920965.1| - 0.035 14.0 0.0 0.067 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|386002666|ref|YP_005920965.1| - 0.051 13.0 0.1 0.088 12.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.1 gi|386002666|ref|YP_005920965.1| - 0.13 12.3 0.3 0.23 11.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain Glycogen_syn PF05693.8 gi|386002667|ref|YP_005920966.1| - 2.3e-16 59.2 0.0 9.7e-07 27.4 0.0 3.0 2 1 0 2 2 2 2 Glycogen synthase Glycos_transf_1 PF00534.15 gi|386002667|ref|YP_005920966.1| - 0.00032 20.1 0.0 0.00073 18.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|386002668|ref|YP_005920967.1| - 6.8e-34 116.7 0.0 9.3e-34 116.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|386002668|ref|YP_005920967.1| - 3.4e-20 72.7 0.0 1.2e-19 71.0 0.0 1.9 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|386002668|ref|YP_005920967.1| - 1.4e-12 47.6 0.0 2.9e-12 46.6 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|386002668|ref|YP_005920967.1| - 1.4e-10 41.4 0.1 2.8e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|386002668|ref|YP_005920967.1| - 4e-10 39.5 0.0 1.2e-08 34.7 0.0 2.5 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.1 gi|386002668|ref|YP_005920967.1| - 6.3e-07 29.5 0.0 1.3e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|386002668|ref|YP_005920967.1| - 0.0012 17.4 0.0 0.0047 15.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase family 20 Glycogen_syn PF05693.8 gi|386002668|ref|YP_005920967.1| - 0.087 11.0 0.0 0.14 10.3 0.0 1.2 1 0 0 1 1 1 0 Glycogen synthase Cro PF09048.5 gi|386002668|ref|YP_005920967.1| - 0.11 12.1 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 Cro GalP_UDP_transf PF01087.17 gi|386002669|ref|YP_005920968.1| - 7.6e-16 58.6 0.0 4.7e-15 56.1 0.0 2.0 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|386002669|ref|YP_005920968.1| - 0.00031 20.3 0.0 0.00043 19.8 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.18 gi|386002669|ref|YP_005920968.1| - 0.061 13.8 0.0 0.96 10.0 0.0 2.1 2 0 0 2 2 2 0 HIT domain Glycos_transf_1 PF00534.15 gi|386002670|ref|YP_005920969.1| - 3.8e-33 114.3 0.0 5.5e-33 113.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|386002670|ref|YP_005920969.1| - 1.1e-24 87.3 0.0 1.9e-24 86.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|386002670|ref|YP_005920969.1| - 7e-19 68.2 0.2 1.5e-18 67.1 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|386002670|ref|YP_005920969.1| - 6.8e-15 55.2 1.1 1.9e-06 27.5 0.3 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|386002670|ref|YP_005920969.1| - 3.8e-14 53.0 0.0 7.3e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|386002670|ref|YP_005920969.1| - 6.2e-11 42.2 0.0 1e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|386002670|ref|YP_005920969.1| - 1.3e-09 38.2 0.0 2.5e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 bPH_2 PF03703.9 gi|386002671|ref|YP_005920970.1| - 3.9e-08 33.1 0.0 6.9e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain AAA PF00004.24 gi|386002672|ref|YP_005920971.1| - 4.9e-50 169.1 0.0 7.6e-50 168.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|386002672|ref|YP_005920971.1| - 1.6e-24 85.6 0.4 1.3e-23 82.7 0.0 2.7 4 0 0 4 4 2 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|386002672|ref|YP_005920971.1| - 3.3e-12 45.8 0.0 1.2e-11 44.0 0.0 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|386002672|ref|YP_005920971.1| - 1.3e-09 37.4 0.0 2.5e-09 36.5 0.0 1.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|386002672|ref|YP_005920971.1| - 1.5e-08 34.8 0.0 3.6e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.9 gi|386002672|ref|YP_005920971.1| - 4.6e-08 33.1 0.0 8e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|386002672|ref|YP_005920971.1| - 1.4e-07 31.3 0.1 9.8e-07 28.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|386002672|ref|YP_005920971.1| - 1.2e-06 28.6 0.0 0.00012 22.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|386002672|ref|YP_005920971.1| - 2.3e-06 27.5 0.0 4.3e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|386002672|ref|YP_005920971.1| - 1.5e-05 25.8 0.0 4.1e-05 24.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|386002672|ref|YP_005920971.1| - 2e-05 24.4 0.0 3.2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|386002672|ref|YP_005920971.1| - 0.00014 20.7 0.0 0.00027 19.7 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus AAA_18 PF13238.1 gi|386002672|ref|YP_005920971.1| - 0.00025 21.3 0.0 0.00058 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|386002672|ref|YP_005920971.1| - 0.0004 20.3 0.0 0.0008 19.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|386002672|ref|YP_005920971.1| - 0.00065 18.8 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.12 gi|386002672|ref|YP_005920971.1| - 0.00071 19.0 0.0 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|386002672|ref|YP_005920971.1| - 0.00074 19.2 0.1 0.0022 17.7 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|386002672|ref|YP_005920971.1| - 0.0011 18.3 0.7 0.72 9.2 0.1 2.5 1 1 1 2 2 2 2 AAA domain KaiC PF06745.8 gi|386002672|ref|YP_005920971.1| - 0.0013 17.8 0.2 0.74 8.8 0.0 2.6 1 1 1 2 2 2 2 KaiC RNA_helicase PF00910.17 gi|386002672|ref|YP_005920971.1| - 0.0032 17.6 0.0 0.0055 16.8 0.0 1.4 1 0 0 1 1 1 1 RNA helicase Sigma54_activ_2 PF14532.1 gi|386002672|ref|YP_005920971.1| - 0.0091 16.0 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain PhoH PF02562.11 gi|386002672|ref|YP_005920971.1| - 0.011 14.9 0.0 0.069 12.3 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein Mg_chelatase PF01078.16 gi|386002672|ref|YP_005920971.1| - 0.011 14.8 0.1 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|386002672|ref|YP_005920971.1| - 0.015 14.7 0.0 0.14 11.5 0.0 2.1 1 1 0 2 2 2 0 Sigma-54 interaction domain NACHT PF05729.7 gi|386002672|ref|YP_005920971.1| - 0.016 14.8 0.0 0.057 13.0 0.0 1.9 1 1 1 2 2 2 0 NACHT domain AAA_3 PF07726.6 gi|386002672|ref|YP_005920971.1| - 0.016 14.7 0.0 0.038 13.5 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|386002672|ref|YP_005920971.1| - 0.017 14.7 0.0 0.039 13.5 0.0 1.6 1 1 0 1 1 1 0 Bacterial dnaA protein DUF2075 PF09848.4 gi|386002672|ref|YP_005920971.1| - 0.046 12.6 0.0 0.067 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|386002672|ref|YP_005920971.1| - 0.074 12.6 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|386002672|ref|YP_005920971.1| - 0.13 11.9 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase UPF0079 PF02367.12 gi|386002672|ref|YP_005920971.1| - 0.13 11.8 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|386002672|ref|YP_005920971.1| - 0.55 9.9 2.5 20 4.8 0.0 2.8 2 1 1 3 3 3 0 NTPase AAA PF00004.24 gi|386002673|ref|YP_005920972.1| - 2.3e-24 86.0 0.0 3.6e-24 85.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PapB PF03333.8 gi|386002673|ref|YP_005920972.1| - 0.083 12.7 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Adhesin biosynthesis transcription regulatory protein AAA PF00004.24 gi|386002674|ref|YP_005920973.1| - 2.8e-09 37.2 0.0 4.9e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF772 PF05598.6 gi|386002675|ref|YP_005920974.1| - 2.3e-21 75.4 0.1 5.2e-21 74.3 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|386002675|ref|YP_005920974.1| - 4.3e-12 46.0 0.2 8e-12 45.1 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|386002675|ref|YP_005920974.1| - 1.4e-05 24.7 0.0 3.3e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease Phage_integrase PF00589.17 gi|386002676|ref|YP_005920975.1| - 2.6e-23 82.5 0.0 3.1e-23 82.3 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.2 gi|386002676|ref|YP_005920975.1| - 8.7e-07 28.8 0.0 1.2e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Integrase TroA PF01297.12 gi|386002678|ref|YP_005920977.1| - 6.7e-75 251.6 0.0 7.5e-75 251.4 0.0 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family ABC_tran PF00005.22 gi|386002679|ref|YP_005920978.1| - 6.5e-29 100.9 0.0 9.7e-29 100.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386002679|ref|YP_005920978.1| - 1.9e-14 54.3 0.2 3.3e-11 43.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|386002679|ref|YP_005920978.1| - 5.2e-07 29.1 0.0 9.1e-07 28.3 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|386002679|ref|YP_005920978.1| - 0.00032 19.8 0.0 0.14 11.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|386002679|ref|YP_005920978.1| - 0.00079 18.9 0.0 0.0018 17.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|386002679|ref|YP_005920978.1| - 0.0016 18.4 0.2 0.0071 16.3 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|386002679|ref|YP_005920978.1| - 0.0032 17.8 0.0 0.0056 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|386002679|ref|YP_005920978.1| - 0.0066 16.3 0.3 0.13 12.1 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|386002679|ref|YP_005920978.1| - 0.022 14.3 0.0 0.074 12.6 0.0 1.8 2 1 1 3 3 3 0 AAA domain DUF460 PF04312.8 gi|386002679|ref|YP_005920978.1| - 0.027 13.9 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF460) AAA_19 PF13245.1 gi|386002679|ref|YP_005920978.1| - 0.031 14.0 0.1 0.07 12.8 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain IstB_IS21 PF01695.12 gi|386002679|ref|YP_005920978.1| - 0.031 13.6 0.1 5.4 6.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.7 gi|386002679|ref|YP_005920978.1| - 0.049 13.2 0.0 0.096 12.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ArgK PF03308.11 gi|386002679|ref|YP_005920978.1| - 0.056 12.2 0.0 0.084 11.6 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA PF00004.24 gi|386002679|ref|YP_005920978.1| - 0.067 13.3 0.1 0.28 11.3 0.0 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|386002679|ref|YP_005920978.1| - 0.071 11.9 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.14 gi|386002679|ref|YP_005920978.1| - 0.09 12.2 0.5 0.17 11.3 0.2 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|386002679|ref|YP_005920978.1| - 0.11 12.1 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|386002679|ref|YP_005920978.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PIF1 PF05970.9 gi|386002679|ref|YP_005920978.1| - 0.15 11.0 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_10 PF12846.2 gi|386002679|ref|YP_005920978.1| - 0.15 11.4 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain NB-ARC PF00931.17 gi|386002679|ref|YP_005920978.1| - 0.17 10.7 0.1 0.26 10.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC-3 PF00950.12 gi|386002680|ref|YP_005920979.1| - 2.2e-76 256.5 30.4 2.5e-76 256.3 21.1 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|386002680|ref|YP_005920979.1| - 2e-08 33.4 34.0 3.8e-08 32.5 23.6 1.5 1 1 0 1 1 1 1 FecCD transport family NPCBM_assoc PF10633.4 gi|386002681|ref|YP_005920980.1| - 3.1e-06 27.1 0.1 0.0011 18.9 0.1 3.3 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|386002681|ref|YP_005920980.1| - 0.1 12.6 0.0 2 8.5 0.0 2.2 2 0 0 2 2 2 0 CARDB ABC_tran PF00005.22 gi|386002682|ref|YP_005920981.1| - 2.2e-28 99.2 0.0 3.1e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386002682|ref|YP_005920981.1| - 1.6e-15 57.8 0.4 4.9e-08 33.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|386002682|ref|YP_005920981.1| - 0.00038 19.6 0.1 0.038 13.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|386002682|ref|YP_005920981.1| - 0.00043 19.7 0.0 0.00079 18.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|386002682|ref|YP_005920981.1| - 0.00055 20.3 0.2 0.00094 19.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|386002682|ref|YP_005920981.1| - 0.0039 17.1 0.0 0.0061 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|386002682|ref|YP_005920981.1| - 0.0041 16.7 0.0 0.012 15.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|386002682|ref|YP_005920981.1| - 0.011 14.2 0.0 0.18 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.1 gi|386002682|ref|YP_005920981.1| - 0.018 15.5 0.0 0.037 14.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_5 PF07728.9 gi|386002682|ref|YP_005920981.1| - 0.025 14.2 0.0 0.28 10.9 0.0 2.4 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|386002682|ref|YP_005920981.1| - 0.04 13.8 0.0 0.088 12.7 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ArgK PF03308.11 gi|386002682|ref|YP_005920981.1| - 0.042 12.6 0.0 0.078 11.7 0.0 1.3 1 0 0 1 1 1 0 ArgK protein cobW PF02492.14 gi|386002682|ref|YP_005920981.1| - 0.048 13.1 0.1 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|386002682|ref|YP_005920981.1| - 0.049 13.3 0.0 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_14 PF13173.1 gi|386002682|ref|YP_005920981.1| - 0.051 13.4 0.0 2 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain FAA_hydrolase PF01557.13 gi|386002682|ref|YP_005920981.1| - 0.061 12.7 0.0 0.084 12.3 0.0 1.2 1 0 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family AAA_25 PF13481.1 gi|386002682|ref|YP_005920981.1| - 0.12 11.8 0.0 0.41 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|386002682|ref|YP_005920981.1| - 0.16 11.1 0.0 1.3 8.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.1 gi|386002682|ref|YP_005920981.1| - 0.16 11.4 0.0 0.5 9.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|386002683|ref|YP_005920982.1| - 5.9e-11 41.9 23.7 5.9e-11 41.9 16.5 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|386002683|ref|YP_005920982.1| - 2.3e-05 23.6 32.3 2.9e-05 23.2 22.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Pterin_bind PF00809.17 gi|386002684|ref|YP_005920983.1| - 2.5e-43 147.9 0.0 3.5e-43 147.4 0.0 1.2 1 0 0 1 1 1 1 Pterin binding enzyme F420_ligase PF01996.11 gi|386002685|ref|YP_005920984.1| - 1.5e-27 96.1 0.0 1.8e-27 95.9 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase F420_ligase PF01996.11 gi|386002686|ref|YP_005920985.1| - 4e-27 94.7 0.1 7.7e-27 93.8 0.1 1.5 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.17 gi|386002686|ref|YP_005920985.1| - 8.9e-16 57.4 0.3 1.5e-15 56.6 0.2 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|386002686|ref|YP_005920985.1| - 3.2e-09 36.8 0.6 5.5e-09 36.0 0.4 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|386002686|ref|YP_005920985.1| - 0.004 16.5 1.6 0.43 9.9 0.1 2.2 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases Methyltransf_23 PF13489.1 gi|386002687|ref|YP_005920986.1| - 4.6e-09 36.2 0.0 6.1e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386002687|ref|YP_005920986.1| - 0.0025 18.2 0.0 0.0042 17.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386002687|ref|YP_005920986.1| - 0.0027 17.2 0.0 0.0046 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|386002687|ref|YP_005920986.1| - 0.0094 16.2 0.0 0.014 15.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386002687|ref|YP_005920986.1| - 0.049 14.1 0.0 0.085 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Glyco_tranf_2_5 PF13712.1 gi|386002688|ref|YP_005920987.1| - 1.3e-36 125.9 0.0 3.6e-36 124.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family Glycos_transf_2 PF00535.21 gi|386002688|ref|YP_005920987.1| - 0.0013 18.4 0.0 0.0084 15.8 0.0 2.0 1 1 1 2 2 2 1 Glycosyl transferase family 2 Methyltransf_11 PF08241.7 gi|386002689|ref|YP_005920988.1| - 0.0023 18.3 0.1 0.0038 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Glycos_transf_2 PF00535.21 gi|386002690|ref|YP_005920989.1| - 6.8e-28 97.4 0.1 2e-27 95.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|386002690|ref|YP_005920989.1| - 1.3e-23 83.9 0.0 2.4e-23 83.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Methyltransf_11 PF08241.7 gi|386002690|ref|YP_005920989.1| - 4.3e-11 43.1 0.3 1.8e-10 41.1 0.2 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386002690|ref|YP_005920989.1| - 1.7e-10 40.8 0.0 3.3e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386002690|ref|YP_005920989.1| - 6.2e-08 32.3 1.2 4e-06 26.4 0.0 2.9 1 1 2 3 3 3 1 Methyltransferase domain Glyco_tranf_2_5 PF13712.1 gi|386002690|ref|YP_005920989.1| - 2.9e-06 26.6 0.0 0.00072 18.8 0.0 2.6 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_tranf_2_2 PF10111.4 gi|386002690|ref|YP_005920989.1| - 8.3e-06 25.0 0.0 1.6e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|386002690|ref|YP_005920989.1| - 3.5e-05 23.6 0.0 5.8e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Methyltransf_12 PF08242.7 gi|386002690|ref|YP_005920989.1| - 0.00014 22.2 0.1 0.00048 20.5 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386002690|ref|YP_005920989.1| - 0.00069 18.8 0.0 0.0011 18.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Glyco_transf_21 PF13506.1 gi|386002690|ref|YP_005920989.1| - 0.0062 15.8 0.0 0.012 14.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 DREV PF05219.7 gi|386002690|ref|YP_005920989.1| - 0.052 12.4 0.0 0.11 11.3 0.0 1.5 1 1 0 1 1 1 0 DREV methyltransferase Methyltransf_18 PF12847.2 gi|386002690|ref|YP_005920989.1| - 0.066 13.8 0.3 2 9.0 0.0 2.8 3 0 0 3 3 3 0 Methyltransferase domain Glyco_tranf_2_4 PF13704.1 gi|386002690|ref|YP_005920989.1| - 0.13 12.6 0.0 0.28 11.5 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Methyltransf_25 PF13649.1 gi|386002690|ref|YP_005920989.1| - 0.19 12.0 0.2 0.77 10.1 0.0 2.0 1 1 1 2 2 2 0 Methyltransferase domain Glycos_transf_1 PF00534.15 gi|386002691|ref|YP_005920990.1| - 2.9e-18 65.8 0.0 1e-17 64.1 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|386002691|ref|YP_005920990.1| - 2.7e-16 59.9 0.0 5.5e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|386002692|ref|YP_005920991.1| - 2.9e-35 121.4 0.1 6.2e-35 120.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|386002692|ref|YP_005920991.1| - 7e-26 91.4 0.0 9.7e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|386002692|ref|YP_005920991.1| - 1.1e-16 60.8 0.0 1.9e-16 60.0 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|386002692|ref|YP_005920991.1| - 4.7e-05 23.1 0.0 6.1e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 GNT-I PF03071.10 gi|386002692|ref|YP_005920991.1| - 0.063 11.8 0.0 0.11 11.0 0.0 1.3 1 0 0 1 1 1 0 GNT-I family Glycos_transf_2 PF00535.21 gi|386002693|ref|YP_005920992.1| - 2.4e-30 105.4 0.0 7.8e-30 103.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|386002693|ref|YP_005920992.1| - 9.6e-21 74.6 0.0 1.7e-20 73.8 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|386002693|ref|YP_005920992.1| - 7e-17 61.4 0.0 1.1e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|386002693|ref|YP_005920992.1| - 0.00033 20.4 0.0 0.00062 19.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|386002693|ref|YP_005920992.1| - 0.0012 18.1 0.0 0.0021 17.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Peptidase_C42 PF05533.7 gi|386002693|ref|YP_005920992.1| - 0.023 14.5 0.0 0.063 13.1 0.0 1.7 2 0 0 2 2 2 0 Beet yellows virus-type papain-like endopeptidase C42 Glyco_transf_7C PF02709.9 gi|386002693|ref|YP_005920992.1| - 0.069 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase PS_pyruv_trans PF04230.8 gi|386002694|ref|YP_005920993.1| - 4.6e-38 131.5 0.0 7.7e-38 130.8 0.0 1.3 1 1 0 1 1 1 1 Polysaccharide pyruvyl transferase FrhB_FdhB_C PF04432.8 gi|386002695|ref|YP_005920994.1| - 1.6e-24 86.1 0.0 2.5e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|386002695|ref|YP_005920994.1| - 2.3e-15 56.1 0.0 4.2e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.1 gi|386002695|ref|YP_005920994.1| - 7.2e-09 35.3 4.5 7.2e-09 35.3 3.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386002695|ref|YP_005920994.1| - 2.3e-08 34.1 8.0 5.8e-08 32.8 4.0 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386002695|ref|YP_005920994.1| - 3.4e-08 33.7 8.6 1.1e-07 32.0 4.2 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386002695|ref|YP_005920994.1| - 1.3e-07 30.9 2.4 1.3e-07 30.9 1.6 3.4 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386002695|ref|YP_005920994.1| - 3.8e-06 26.5 8.3 3.8e-06 26.5 5.7 2.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002695|ref|YP_005920994.1| - 1.1e-05 25.3 3.4 0.1 12.6 0.2 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002695|ref|YP_005920994.1| - 4.7e-05 23.0 21.1 7.7e-05 22.3 0.9 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386002695|ref|YP_005920994.1| - 0.00029 21.3 1.0 0.00029 21.3 0.7 2.9 3 0 0 3 3 2 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|386002695|ref|YP_005920994.1| - 0.0006 20.4 13.2 0.0017 19.0 6.2 3.2 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|386002695|ref|YP_005920994.1| - 0.0018 18.0 2.4 0.0018 18.0 1.7 3.2 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|386002695|ref|YP_005920994.1| - 0.0069 16.7 1.8 0.0069 16.7 1.3 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|386002695|ref|YP_005920994.1| - 0.017 15.4 11.5 0.21 11.9 1.1 3.3 2 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386002695|ref|YP_005920994.1| - 0.02 15.2 0.8 0.02 15.2 0.6 3.7 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|386002695|ref|YP_005920994.1| - 0.066 13.6 11.6 0.19 12.1 1.6 2.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Polysacc_synt PF01943.12 gi|386002696|ref|YP_005920995.1| - 8.1e-16 58.0 27.1 8.1e-16 58.0 18.8 2.9 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|386002696|ref|YP_005920995.1| - 1e-05 25.1 35.6 1e-05 25.1 24.7 3.2 1 1 1 3 3 3 1 Polysaccharide biosynthesis protein Oxidored_q1_N PF00662.15 gi|386002696|ref|YP_005920995.1| - 1.4 8.5 5.8 13 5.3 0.5 2.9 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Glycos_transf_1 PF00534.15 gi|386002697|ref|YP_005920996.1| - 1.3e-29 102.7 0.0 3.1e-29 101.6 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|386002697|ref|YP_005920996.1| - 7.6e-28 97.4 0.2 1e-27 96.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|386002697|ref|YP_005920996.1| - 4.2e-27 95.2 0.3 7.4e-27 94.4 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|386002697|ref|YP_005920996.1| - 1.4e-15 57.6 0.1 1.6e-14 54.2 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|386002697|ref|YP_005920996.1| - 9.4e-11 41.7 0.0 2e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|386002697|ref|YP_005920996.1| - 0.00067 19.2 0.3 0.78 9.1 0.0 2.7 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.1 gi|386002697|ref|YP_005920996.1| - 0.025 14.8 0.3 0.12 12.6 0.1 2.4 2 1 0 2 2 2 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|386002698|ref|YP_005920997.1| - 1.1e-23 83.6 0.0 1.6e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|386002698|ref|YP_005920997.1| - 2.1e-22 80.0 0.0 3.4e-22 79.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|386002698|ref|YP_005920997.1| - 2.5e-14 53.4 0.0 3.5e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|386002698|ref|YP_005920997.1| - 5e-12 45.4 0.0 8.3e-12 44.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|386002698|ref|YP_005920997.1| - 0.00017 20.7 0.0 0.00025 20.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 PmbA_TldD PF01523.11 gi|386002699|ref|YP_005920998.1| - 2.5e-71 240.3 3.3 3.1e-71 240.0 2.3 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Ribosomal_L9_N PF01281.14 gi|386002699|ref|YP_005920998.1| - 0.08 12.2 0.0 23 4.3 0.0 3.1 2 0 0 2 2 2 0 Ribosomal protein L9, N-terminal domain Lon_C PF05362.8 gi|386002700|ref|YP_005920999.1| - 1.4e-33 115.9 1.7 2.2e-33 115.3 1.2 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|386002700|ref|YP_005920999.1| - 4.9e-28 98.0 0.0 4.5e-21 75.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|386002700|ref|YP_005920999.1| - 1.9e-15 56.6 0.0 3e-08 33.0 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|386002700|ref|YP_005920999.1| - 2e-14 53.4 0.0 1.5e-08 34.2 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.9 gi|386002700|ref|YP_005920999.1| - 8.4e-11 41.7 0.1 0.00071 19.3 0.0 3.5 3 1 0 3 3 3 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|386002700|ref|YP_005920999.1| - 4.1e-10 39.2 0.9 8.3e-10 38.2 0.6 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.18 gi|386002700|ref|YP_005920999.1| - 7.1e-08 31.6 0.2 0.036 12.8 0.0 3.5 3 0 0 3 3 3 2 MCM2/3/5 family AAA_22 PF13401.1 gi|386002700|ref|YP_005920999.1| - 1.4e-05 25.1 0.0 0.015 15.4 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA PF00004.24 gi|386002700|ref|YP_005920999.1| - 1.5e-05 25.1 0.0 0.19 11.9 0.0 3.2 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|386002700|ref|YP_005920999.1| - 0.00027 20.9 0.0 0.44 10.5 0.0 2.8 3 0 0 3 3 2 2 Sigma-54 interaction domain AAA_18 PF13238.1 gi|386002700|ref|YP_005920999.1| - 0.00044 20.5 0.0 0.0011 19.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|386002700|ref|YP_005920999.1| - 0.0025 16.8 0.0 0.048 12.7 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|386002700|ref|YP_005920999.1| - 0.0072 15.0 0.0 1.8 7.1 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_19 PF13245.1 gi|386002700|ref|YP_005920999.1| - 0.0072 16.0 0.1 0.025 14.3 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain AAA_16 PF13191.1 gi|386002700|ref|YP_005920999.1| - 0.0075 16.2 0.1 0.39 10.6 0.0 3.0 3 1 1 4 4 3 1 AAA ATPase domain AAA_30 PF13604.1 gi|386002700|ref|YP_005920999.1| - 0.014 14.9 0.0 0.035 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.6 gi|386002700|ref|YP_005920999.1| - 0.016 14.8 0.0 7.8 6.1 0.0 2.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|386002700|ref|YP_005920999.1| - 0.018 13.9 0.1 0.064 12.1 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|386002700|ref|YP_005920999.1| - 0.043 13.2 0.1 0.18 11.2 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.18 gi|386002700|ref|YP_005920999.1| - 0.047 13.6 0.0 0.49 10.3 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|386002700|ref|YP_005920999.1| - 0.072 12.9 0.0 0.56 10.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|386002701|ref|YP_005921000.1| - 2.9e-95 315.4 0.0 4.1e-47 159.6 0.0 2.6 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|386002701|ref|YP_005921000.1| - 3.6e-26 90.9 0.1 1.3e-25 89.1 0.3 1.8 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|386002701|ref|YP_005921000.1| - 9.8e-15 54.2 0.0 2.9e-07 29.7 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|386002701|ref|YP_005921000.1| - 1.7e-13 51.0 0.5 1.4e-06 28.4 0.0 3.0 3 1 0 3 3 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|386002701|ref|YP_005921000.1| - 3.7e-12 45.6 0.1 8.4e-12 44.5 0.1 1.5 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.9 gi|386002701|ref|YP_005921000.1| - 5.2e-12 46.0 0.0 6.5e-06 26.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|386002701|ref|YP_005921000.1| - 5.6e-12 46.5 0.0 0.00017 22.3 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|386002701|ref|YP_005921000.1| - 2e-11 43.7 0.4 0.00012 21.8 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|386002701|ref|YP_005921000.1| - 2.7e-11 43.7 0.1 0.00053 20.1 0.0 3.9 2 2 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|386002701|ref|YP_005921000.1| - 2.8e-10 39.5 0.0 8.4e-05 21.4 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|386002701|ref|YP_005921000.1| - 7.7e-10 38.7 0.0 0.00085 19.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|386002701|ref|YP_005921000.1| - 5.8e-09 35.5 0.2 0.007 16.0 0.0 3.3 2 0 0 2 2 2 2 Part of AAA domain AAA_33 PF13671.1 gi|386002701|ref|YP_005921000.1| - 5.9e-09 35.9 0.0 0.002 18.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|386002701|ref|YP_005921000.1| - 1.2e-08 34.5 0.1 0.0037 16.6 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|386002701|ref|YP_005921000.1| - 4.5e-08 32.4 0.0 0.0071 15.4 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_25 PF13481.1 gi|386002701|ref|YP_005921000.1| - 9.9e-08 31.6 7.0 0.22 10.9 0.1 4.4 2 2 1 4 4 4 2 AAA domain AAA_18 PF13238.1 gi|386002701|ref|YP_005921000.1| - 6.3e-07 29.7 0.0 0.042 14.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|386002701|ref|YP_005921000.1| - 1.3e-06 28.4 0.0 0.041 13.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|386002701|ref|YP_005921000.1| - 1.7e-06 27.3 2.5 0.037 13.1 0.1 3.0 4 0 0 4 4 3 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|386002701|ref|YP_005921000.1| - 5.4e-06 26.5 0.0 0.067 13.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|386002701|ref|YP_005921000.1| - 1e-05 25.1 0.1 0.3 10.5 0.0 3.6 2 2 0 2 2 2 2 Sigma-54 interaction domain KaiC PF06745.8 gi|386002701|ref|YP_005921000.1| - 1.4e-05 24.2 0.6 0.15 11.1 0.0 3.3 2 1 1 3 3 3 2 KaiC PhoH PF02562.11 gi|386002701|ref|YP_005921000.1| - 2.2e-05 23.7 0.1 0.12 11.5 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein RNA_helicase PF00910.17 gi|386002701|ref|YP_005921000.1| - 6e-05 23.1 0.0 0.55 10.4 0.0 2.4 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.22 gi|386002701|ref|YP_005921000.1| - 7e-05 23.1 0.0 0.38 11.0 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.6 gi|386002701|ref|YP_005921000.1| - 7.9e-05 22.2 0.0 0.36 10.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|386002701|ref|YP_005921000.1| - 0.00026 20.6 0.0 0.35 10.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|386002701|ref|YP_005921000.1| - 0.00058 19.5 0.2 1.9 8.1 0.0 3.9 4 0 0 4 4 4 1 NACHT domain Cytidylate_kin2 PF13189.1 gi|386002701|ref|YP_005921000.1| - 0.00069 19.5 0.0 0.98 9.3 0.0 2.3 2 0 0 2 2 2 2 Cytidylate kinase-like family SKI PF01202.17 gi|386002701|ref|YP_005921000.1| - 0.00073 19.4 0.1 1.6 8.5 0.0 2.4 2 0 0 2 2 2 2 Shikimate kinase Arch_ATPase PF01637.13 gi|386002701|ref|YP_005921000.1| - 0.00089 19.0 0.1 0.81 9.3 0.0 3.2 2 2 1 3 3 3 1 Archaeal ATPase ATP-synt_ab PF00006.20 gi|386002701|ref|YP_005921000.1| - 0.0019 17.7 0.0 1.8 8.0 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain DUF2075 PF09848.4 gi|386002701|ref|YP_005921000.1| - 0.0021 17.0 0.0 0.96 8.3 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|386002701|ref|YP_005921000.1| - 0.0024 16.8 0.0 1.3 7.9 0.0 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF815) AAA_30 PF13604.1 gi|386002701|ref|YP_005921000.1| - 0.0027 17.3 0.0 4 6.9 0.0 3.0 3 0 0 3 3 3 0 AAA domain UPF0079 PF02367.12 gi|386002701|ref|YP_005921000.1| - 0.0029 17.2 0.7 2.4 7.8 0.1 3.4 2 1 1 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 Parvo_NS1 PF01057.12 gi|386002701|ref|YP_005921000.1| - 0.0029 16.5 0.0 1.3 7.8 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 AAA_11 PF13086.1 gi|386002701|ref|YP_005921000.1| - 0.0031 17.1 0.0 1.6 8.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain IPT PF01745.11 gi|386002701|ref|YP_005921000.1| - 0.0038 16.4 0.0 2.1 7.4 0.0 2.3 2 0 0 2 2 2 1 Isopentenyl transferase NTPase_1 PF03266.10 gi|386002701|ref|YP_005921000.1| - 0.017 14.8 2.2 7.6 6.2 0.0 3.6 2 2 1 3 3 3 0 NTPase NB-ARC PF00931.17 gi|386002701|ref|YP_005921000.1| - 0.03 13.1 0.0 4.7 5.9 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain Bac_DnaA PF00308.13 gi|386002701|ref|YP_005921000.1| - 0.058 13.0 0.0 4.1 6.9 0.0 2.8 3 0 0 3 3 2 0 Bacterial dnaA protein ResIII PF04851.10 gi|386002701|ref|YP_005921000.1| - 0.079 12.7 0.0 16 5.3 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit SRPRB PF09439.5 gi|386002701|ref|YP_005921000.1| - 0.12 11.6 0.0 21 4.2 0.0 2.9 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.1 gi|386002701|ref|YP_005921000.1| - 0.14 11.7 0.0 12 5.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain KTI12 PF08433.5 gi|386002701|ref|YP_005921000.1| - 0.15 11.2 0.0 12 4.9 0.0 2.2 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Guanylate_kin PF00625.16 gi|386002701|ref|YP_005921000.1| - 0.19 11.1 0.2 17 4.7 0.0 2.9 3 1 1 4 4 3 0 Guanylate kinase Viral_helicase1 PF01443.13 gi|386002701|ref|YP_005921000.1| - 0.21 11.1 0.0 3.1 7.2 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.10 gi|386002701|ref|YP_005921000.1| - 0.27 9.8 0.0 22 3.5 0.0 2.6 2 1 1 3 3 3 0 Rad17 cell cycle checkpoint protein HTH_20 PF12840.2 gi|386002702|ref|YP_005921001.1| - 2.4e-15 56.0 4.9 2.2e-13 49.7 0.0 2.9 2 1 1 3 3 3 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|386002702|ref|YP_005921001.1| - 3.9e-11 42.4 0.0 9.9e-09 34.7 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|386002702|ref|YP_005921001.1| - 2.5e-07 30.2 0.0 0.0034 17.0 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|386002702|ref|YP_005921001.1| - 6.3e-07 28.9 7.2 9.5e-05 21.9 0.0 3.3 2 1 0 3 3 3 2 MarR family LexA_DNA_bind PF01726.11 gi|386002702|ref|YP_005921001.1| - 0.00021 20.7 0.1 0.013 15.0 0.0 2.5 2 0 0 2 2 2 1 LexA DNA binding domain Rrf2 PF02082.15 gi|386002702|ref|YP_005921001.1| - 0.00022 21.2 0.0 0.88 9.7 0.0 2.5 2 0 0 2 2 2 2 Transcriptional regulator HTH_24 PF13412.1 gi|386002702|ref|YP_005921001.1| - 0.00024 20.4 6.5 0.0076 15.6 0.1 3.7 3 2 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|386002702|ref|YP_005921001.1| - 0.00067 19.9 0.5 2 8.7 0.0 3.0 3 0 0 3 3 3 2 Winged helix DNA-binding domain DDRGK PF09756.4 gi|386002702|ref|YP_005921001.1| - 0.0012 18.2 0.0 0.3 10.4 0.0 2.8 3 0 0 3 3 3 1 DDRGK domain DUF4423 PF14394.1 gi|386002702|ref|YP_005921001.1| - 0.0059 16.1 0.0 1.1 8.7 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_IclR PF09339.5 gi|386002702|ref|YP_005921001.1| - 0.0076 15.8 1.0 0.24 10.9 0.2 2.7 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|386002702|ref|YP_005921001.1| - 0.0077 16.0 0.0 4.5 7.1 0.0 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain FeoC PF09012.5 gi|386002702|ref|YP_005921001.1| - 0.0088 15.7 0.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 1 FeoC like transcriptional regulator DUF2250 PF10007.4 gi|386002702|ref|YP_005921001.1| - 0.011 15.6 0.2 0.6 10.0 0.0 2.7 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|386002702|ref|YP_005921001.1| - 0.023 14.3 0.1 0.12 12.0 0.0 2.1 2 0 0 2 2 2 0 MarR family GntR PF00392.16 gi|386002702|ref|YP_005921001.1| - 0.023 14.1 0.2 0.69 9.3 0.2 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family PadR PF03551.9 gi|386002702|ref|YP_005921001.1| - 0.061 13.1 0.0 0.19 11.4 0.0 1.9 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family DUF742 PF05331.6 gi|386002702|ref|YP_005921001.1| - 0.083 12.5 0.0 0.48 10.0 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF742) Fe_dep_repress PF01325.14 gi|386002702|ref|YP_005921001.1| - 0.13 12.2 0.0 25 4.8 0.0 2.4 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF21 PF01595.15 gi|386002703|ref|YP_005921002.1| - 1.7e-50 170.8 3.7 2.1e-50 170.5 2.6 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|386002703|ref|YP_005921002.1| - 1.1e-23 82.8 0.3 4.5e-23 80.8 0.0 2.1 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|386002703|ref|YP_005921002.1| - 8.3e-18 63.9 0.1 6e-11 41.9 0.0 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M48 PF01435.13 gi|386002704|ref|YP_005921003.1| - 1.4e-39 136.0 0.1 1.6e-39 135.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|386002704|ref|YP_005921003.1| - 0.00032 19.7 0.1 0.00056 18.9 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF4157 PF13699.1 gi|386002704|ref|YP_005921003.1| - 0.11 12.6 0.2 0.27 11.4 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) DUF1282 PF06930.7 gi|386002704|ref|YP_005921003.1| - 5 6.7 8.2 0.49 10.0 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1282) TPR_11 PF13414.1 gi|386002705|ref|YP_005921004.1| - 3.1e-148 481.6 71.1 8.3e-18 63.8 2.8 9.9 5 2 6 12 12 12 12 TPR repeat TPR_1 PF00515.23 gi|386002705|ref|YP_005921004.1| - 2.8e-143 460.3 37.5 1.7e-10 40.0 0.2 17.5 18 1 0 18 18 18 16 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386002705|ref|YP_005921004.1| - 5.8e-127 403.6 57.8 5.9e-09 35.1 0.4 17.4 17 0 0 17 17 17 16 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386002705|ref|YP_005921004.1| - 1e-94 302.9 35.3 3.8e-07 29.7 0.0 17.2 17 0 0 17 17 17 16 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386002705|ref|YP_005921004.1| - 3.3e-94 301.7 11.7 1.9e-06 27.2 0.0 16.8 16 1 1 17 17 17 15 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386002705|ref|YP_005921004.1| - 1.3e-79 261.5 85.9 1.8e-12 47.5 0.2 11.1 4 3 8 13 13 13 13 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386002705|ref|YP_005921004.1| - 1.6e-68 226.6 47.8 1.4e-09 37.6 1.8 10.4 2 2 10 12 12 12 12 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386002705|ref|YP_005921004.1| - 4.4e-62 200.8 82.4 0.00024 21.4 0.1 17.3 2 2 15 17 17 17 17 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386002705|ref|YP_005921004.1| - 4.1e-53 177.1 60.2 4.7e-08 32.7 2.2 11.0 2 1 8 12 12 12 12 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386002705|ref|YP_005921004.1| - 4.8e-50 167.7 45.1 4.3e-08 33.3 0.0 10.6 6 2 4 11 11 11 10 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386002705|ref|YP_005921004.1| - 9.7e-43 140.6 44.2 0.0042 16.7 0.1 16.8 15 1 2 17 17 17 11 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386002705|ref|YP_005921004.1| - 8.3e-33 110.5 18.4 0.059 13.8 0.1 16.4 16 0 0 16 16 16 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|386002705|ref|YP_005921004.1| - 5.1e-27 93.8 0.0 9.4e-05 22.4 0.0 6.8 4 2 2 6 6 6 6 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.12 gi|386002705|ref|YP_005921004.1| - 7.4e-20 71.7 39.8 0.016 15.5 0.2 8.6 3 1 3 8 8 8 7 Bacterial transcriptional activator domain TPR_10 PF13374.1 gi|386002705|ref|YP_005921004.1| - 4.6e-15 54.9 92.5 0.0062 16.4 0.5 15.9 17 1 1 18 18 15 9 Tetratricopeptide repeat DUF3856 PF12968.2 gi|386002705|ref|YP_005921004.1| - 8.9e-15 54.7 22.2 0.032 14.0 0.1 11.2 5 5 4 9 9 9 3 Domain of Unknown Function (DUF3856) TPR_15 PF13429.1 gi|386002705|ref|YP_005921004.1| - 5.7e-14 51.8 29.5 0.00044 19.4 0.5 8.2 2 1 7 9 9 9 5 Tetratricopeptide repeat FAT PF02259.18 gi|386002705|ref|YP_005921004.1| - 1.6e-12 47.1 0.1 0.31 9.9 0.0 8.6 5 4 2 9 9 9 1 FAT domain NARP1 PF12569.3 gi|386002705|ref|YP_005921004.1| - 3e-12 46.0 4.1 0.45 9.2 0.0 8.7 2 2 7 10 10 10 2 NMDA receptor-regulated protein 1 TPR_4 PF07721.9 gi|386002705|ref|YP_005921004.1| - 8.3e-10 38.1 92.1 0.76 10.3 0.0 16.9 17 0 0 17 17 16 4 Tetratricopeptide repeat MIT PF04212.13 gi|386002705|ref|YP_005921004.1| - 5.9e-09 35.6 24.2 0.39 10.6 0.1 11.1 9 3 2 11 11 11 1 MIT (microtubule interacting and transport) domain Coatomer_E PF04733.9 gi|386002705|ref|YP_005921004.1| - 3e-06 26.6 0.7 2.2 7.3 0.0 5.8 5 1 1 6 6 6 1 Coatomer epsilon subunit TPR_5 PF12688.2 gi|386002705|ref|YP_005921004.1| - 3.7e-05 23.7 20.1 0.014 15.4 0.8 6.9 2 2 3 7 7 7 1 Tetratrico peptide repeat TPR_3 PF07720.7 gi|386002705|ref|YP_005921004.1| - 0.00036 20.2 13.7 7.8 6.4 0.0 7.9 10 0 0 10 10 6 0 Tetratricopeptide repeat PPTA PF01239.17 gi|386002705|ref|YP_005921004.1| - 0.00043 19.5 0.0 4.2 6.8 0.0 5.4 5 0 0 5 5 4 1 Protein prenyltransferase alpha subunit repeat TPR_21 PF09976.4 gi|386002705|ref|YP_005921004.1| - 0.00076 19.4 29.0 0.16 11.9 0.0 8.2 7 2 1 9 9 9 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|386002705|ref|YP_005921004.1| - 0.00078 19.5 22.1 0.36 10.9 0.0 8.4 2 1 9 13 13 12 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|386002705|ref|YP_005921004.1| - 0.0014 18.4 17.9 3.2 7.6 0.0 8.5 11 1 1 12 12 9 1 Fis1 C-terminal tetratricopeptide repeat RPN7 PF10602.4 gi|386002705|ref|YP_005921004.1| - 0.0022 17.3 3.0 18 4.6 0.0 6.7 4 3 5 9 9 9 0 26S proteasome subunit RPN7 EST1_DNA_bind PF10373.4 gi|386002705|ref|YP_005921004.1| - 0.0061 15.8 0.1 3.4 6.8 0.0 3.3 3 1 1 4 4 4 1 Est1 DNA/RNA binding domain TruB_N PF01509.13 gi|386002705|ref|YP_005921004.1| - 0.015 15.4 0.0 36 4.4 0.0 4.2 3 1 2 5 5 5 0 TruB family pseudouridylate synthase (N terminal domain) Type_III_YscG PF09477.5 gi|386002705|ref|YP_005921004.1| - 0.081 13.0 0.7 14 5.8 0.1 3.4 2 1 0 2 2 2 0 Bacterial type II secretion system chaperone protein (type_III_yscG) TPR_11 PF13414.1 gi|386002706|ref|YP_005921005.1| - 7.2e-43 144.0 1.5 3e-16 58.8 0.0 2.7 1 1 2 3 3 3 3 TPR repeat TPR_1 PF00515.23 gi|386002706|ref|YP_005921005.1| - 1e-31 107.1 0.0 7e-09 34.9 0.0 4.0 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386002706|ref|YP_005921005.1| - 3.3e-26 89.0 0.1 1.5e-07 30.7 0.0 4.0 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386002706|ref|YP_005921005.1| - 8.1e-21 72.1 0.0 9.2e-06 25.0 0.0 3.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386002706|ref|YP_005921005.1| - 1.3e-20 73.0 2.6 8.3e-08 32.0 0.0 2.7 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|386002706|ref|YP_005921005.1| - 4.6e-19 66.9 0.1 4e-05 23.4 0.0 3.9 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386002706|ref|YP_005921005.1| - 7.6e-18 64.6 1.5 3.7e-10 40.2 0.3 2.8 1 1 1 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386002706|ref|YP_005921005.1| - 7.4e-17 60.9 0.6 2.1e-08 33.9 0.2 2.3 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386002706|ref|YP_005921005.1| - 3.5e-14 52.0 1.2 1.8e-05 24.9 0.2 3.9 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386002706|ref|YP_005921005.1| - 9.3e-12 43.8 0.1 0.0022 17.6 0.0 3.8 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386002706|ref|YP_005921005.1| - 1.5e-10 41.2 0.0 0.00076 19.7 0.0 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386002706|ref|YP_005921005.1| - 4.6e-10 39.2 0.0 0.012 16.0 0.0 3.6 4 0 0 4 4 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|386002706|ref|YP_005921005.1| - 2.7e-05 24.2 0.0 0.011 15.8 0.0 2.2 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.1 gi|386002706|ref|YP_005921005.1| - 6.3e-05 22.1 0.0 0.047 12.7 0.0 2.7 1 1 2 3 3 3 3 Tetratricopeptide repeat MIT PF04212.13 gi|386002706|ref|YP_005921005.1| - 0.00014 21.6 2.1 0.095 12.5 0.3 3.8 3 1 1 4 4 4 1 MIT (microtubule interacting and transport) domain TPR_10 PF13374.1 gi|386002706|ref|YP_005921005.1| - 0.00071 19.4 0.9 0.22 11.5 0.0 3.3 4 0 0 4 4 3 1 Tetratricopeptide repeat BTAD PF03704.12 gi|386002706|ref|YP_005921005.1| - 0.0011 19.3 0.2 0.17 12.2 0.0 2.4 1 1 2 3 3 3 2 Bacterial transcriptional activator domain DUF3856 PF12968.2 gi|386002706|ref|YP_005921005.1| - 0.0041 16.9 0.0 4 7.2 0.0 2.8 2 1 0 3 3 3 1 Domain of Unknown Function (DUF3856) PPR PF01535.15 gi|386002706|ref|YP_005921005.1| - 0.0076 16.1 0.4 1.7 8.8 0.0 3.4 4 0 0 4 4 4 1 PPR repeat RPN7 PF10602.4 gi|386002706|ref|YP_005921005.1| - 0.011 15.0 0.1 0.29 10.5 0.0 2.2 2 1 0 2 2 2 0 26S proteasome subunit RPN7 TPR_21 PF09976.4 gi|386002706|ref|YP_005921005.1| - 0.017 15.0 0.7 4.9 7.0 0.0 2.6 2 1 1 3 3 3 0 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|386002706|ref|YP_005921005.1| - 0.031 13.8 0.0 5.1 6.6 0.0 2.2 1 1 1 2 2 2 0 Plant specific mitochondrial import receptor subunit TOM20 NARP1 PF12569.3 gi|386002706|ref|YP_005921005.1| - 0.038 12.7 0.0 1.7 7.3 0.0 2.2 1 1 0 2 2 2 0 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|386002706|ref|YP_005921005.1| - 0.04 13.7 0.4 6.4 6.7 0.0 2.9 2 1 1 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat TPR_1 PF00515.23 gi|386002707|ref|YP_005921006.1| - 1.9e-220 704.5 46.7 9.5e-12 44.0 0.1 26.0 25 1 1 26 26 26 26 Tetratricopeptide repeat TPR_2 PF07719.12 gi|386002707|ref|YP_005921006.1| - 9.7e-197 621.6 60.6 2.3e-10 39.5 0.2 26.0 25 1 1 26 26 26 25 Tetratricopeptide repeat TPR_11 PF13414.1 gi|386002707|ref|YP_005921006.1| - 2.7e-195 632.3 45.1 9.3e-19 66.8 0.1 13.7 8 3 1 13 13 13 13 TPR repeat TPR_17 PF13431.1 gi|386002707|ref|YP_005921006.1| - 2.7e-138 438.9 32.7 1.9e-07 30.7 0.0 25.9 26 0 0 26 26 26 21 Tetratricopeptide repeat TPR_16 PF13432.1 gi|386002707|ref|YP_005921006.1| - 6.1e-133 431.3 64.7 8e-12 45.4 0.2 15.3 6 5 7 16 16 16 16 Tetratricopeptide repeat TPR_8 PF13181.1 gi|386002707|ref|YP_005921006.1| - 7.2e-123 391.4 41.6 1.6e-06 27.4 0.1 25.6 19 5 7 26 26 26 21 Tetratricopeptide repeat TPR_14 PF13428.1 gi|386002707|ref|YP_005921006.1| - 2.6e-104 332.0 65.9 4.6e-06 26.7 0.5 24.9 2 2 23 25 25 25 23 Tetratricopeptide repeat TPR_12 PF13424.1 gi|386002707|ref|YP_005921006.1| - 8e-99 323.7 52.4 8.4e-13 48.0 0.0 15.5 3 3 15 18 18 18 18 Tetratricopeptide repeat TPR_19 PF14559.1 gi|386002707|ref|YP_005921006.1| - 4.4e-93 305.6 22.2 2.4e-10 40.6 1.2 15.2 5 3 13 18 18 18 18 Tetratricopeptide repeat TPR_9 PF13371.1 gi|386002707|ref|YP_005921006.1| - 1.9e-86 283.9 72.6 2e-09 37.1 0.7 17.7 3 2 19 22 22 22 22 Tetratricopeptide repeat TPR_7 PF13176.1 gi|386002707|ref|YP_005921006.1| - 2e-67 217.7 47.6 0.00029 20.4 0.0 24.0 23 2 2 25 25 24 14 Tetratricopeptide repeat TPR_6 PF13174.1 gi|386002707|ref|YP_005921006.1| - 6.7e-67 217.5 38.9 0.00068 19.9 0.0 23.9 24 0 0 24 24 24 14 Tetratricopeptide repeat Apc3 PF12895.2 gi|386002707|ref|YP_005921006.1| - 8.3e-65 214.9 6.8 1.4e-08 34.7 0.0 12.6 2 2 13 16 16 16 15 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.12 gi|386002707|ref|YP_005921006.1| - 1.3e-34 119.5 25.6 0.0022 18.2 0.0 12.8 4 1 5 12 12 12 7 Bacterial transcriptional activator domain NARP1 PF12569.3 gi|386002707|ref|YP_005921006.1| - 4e-31 108.3 0.2 0.0028 16.4 0.0 12.0 3 2 7 12 12 12 7 NMDA receptor-regulated protein 1 TPR_4 PF07721.9 gi|386002707|ref|YP_005921006.1| - 1.5e-26 89.9 71.3 0.087 13.2 2.0 20.4 22 0 0 22 22 20 6 Tetratricopeptide repeat DUF3856 PF12968.2 gi|386002707|ref|YP_005921006.1| - 5.5e-26 91.1 18.7 0.61 9.9 0.0 17.2 7 4 11 18 18 17 4 Domain of Unknown Function (DUF3856) Fis1_TPR_C PF14853.1 gi|386002707|ref|YP_005921006.1| - 1.5e-23 82.4 30.6 0.0013 18.5 0.1 16.5 12 5 7 19 19 17 5 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|386002707|ref|YP_005921006.1| - 1.8e-22 78.5 83.2 0.0062 16.4 0.1 21.4 24 0 0 24 24 22 8 Tetratricopeptide repeat TPR_3 PF07720.7 gi|386002707|ref|YP_005921006.1| - 2.5e-20 71.8 15.4 0.45 10.3 0.0 17.1 19 0 0 19 19 19 3 Tetratricopeptide repeat TPR_15 PF13429.1 gi|386002707|ref|YP_005921006.1| - 2.6e-15 56.2 13.7 0.042 12.9 0.1 9.1 1 1 7 10 10 10 5 Tetratricopeptide repeat TPR_20 PF14561.1 gi|386002707|ref|YP_005921006.1| - 1.1e-14 54.2 2.8 0.35 11.0 0.2 10.2 6 3 7 13 13 12 3 Tetratricopeptide repeat MIT PF04212.13 gi|386002707|ref|YP_005921006.1| - 1.3e-09 37.8 67.9 0.027 14.3 0.8 18.1 17 4 3 20 20 20 3 MIT (microtubule interacting and transport) domain PPR PF01535.15 gi|386002707|ref|YP_005921006.1| - 9.7e-08 31.5 32.3 3.4 7.8 0.0 16.7 21 0 0 21 21 16 1 PPR repeat FAT PF02259.18 gi|386002707|ref|YP_005921006.1| - 1.2e-07 31.0 0.0 2.3 7.0 0.0 8.0 4 1 5 9 9 9 1 FAT domain TPR_5 PF12688.2 gi|386002707|ref|YP_005921006.1| - 1.6e-07 31.3 24.6 2.5 8.1 0.0 11.3 3 2 7 13 13 13 2 Tetratrico peptide repeat Coatomer_E PF04733.9 gi|386002707|ref|YP_005921006.1| - 1.5e-06 27.6 0.0 0.1 11.7 0.0 4.7 4 1 1 5 5 5 2 Coatomer epsilon subunit Rapsyn_N PF10579.4 gi|386002707|ref|YP_005921006.1| - 0.00024 20.8 0.0 2.6 7.9 0.0 5.8 7 0 0 7 7 5 1 Rapsyn N-terminal myristoylation and linker region SNAP PF14938.1 gi|386002707|ref|YP_005921006.1| - 0.00056 19.1 15.9 3.6 6.6 0.0 8.7 6 4 3 9 9 9 1 Soluble NSF attachment protein, SNAP TPR_21 PF09976.4 gi|386002707|ref|YP_005921006.1| - 0.04 13.8 33.7 0.41 10.5 0.0 10.2 11 2 2 13 13 10 0 Tetratricopeptide repeat ChAPs PF09295.5 gi|386002707|ref|YP_005921006.1| - 0.063 12.0 0.0 5.8 5.5 0.0 3.1 4 0 0 4 4 4 0 ChAPs (Chs5p-Arf1p-binding proteins) RPN7 PF10602.4 gi|386002707|ref|YP_005921006.1| - 0.19 11.1 21.6 13 5.0 0.0 10.3 11 3 5 16 16 12 0 26S proteasome subunit RPN7 Aida_N PF08910.5 gi|386002707|ref|YP_005921006.1| - 0.32 11.2 2.1 11 6.3 0.0 4.4 4 1 1 5 5 3 0 Aida N-terminus AP2 PF00847.15 gi|386002707|ref|YP_005921006.1| - 9.5 6.4 9.2 31 4.8 0.0 5.8 8 0 0 8 8 5 0 AP2 domain Acetyltransf_1 PF00583.19 gi|386002708|ref|YP_005921007.1| - 8.6e-14 51.3 1.6 1.2e-13 50.8 1.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|386002708|ref|YP_005921007.1| - 2.5e-09 36.7 0.2 4e-09 36.0 0.2 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|386002708|ref|YP_005921007.1| - 7.6e-07 29.2 0.1 8.8e-07 29.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|386002708|ref|YP_005921007.1| - 1.4e-06 28.1 0.0 4.6e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|386002708|ref|YP_005921007.1| - 4.3e-06 26.8 0.0 5.7e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|386002708|ref|YP_005921007.1| - 0.00061 19.7 0.0 0.00081 19.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|386002708|ref|YP_005921007.1| - 0.00081 19.3 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|386002708|ref|YP_005921007.1| - 0.1 12.4 0.1 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF2111 PF09884.4 gi|386002709|ref|YP_005921008.1| - 2.6e-31 107.2 3.7 4.2e-31 106.6 2.5 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Arginosuc_synth PF00764.14 gi|386002710|ref|YP_005921009.1| - 3.9e-165 549.6 0.0 4.4e-165 549.4 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.12 gi|386002710|ref|YP_005921009.1| - 0.00093 18.1 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|386002710|ref|YP_005921009.1| - 0.044 13.2 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.8 gi|386002710|ref|YP_005921009.1| - 0.17 11.1 0.0 0.32 10.2 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Radical_SAM PF04055.16 gi|386002711|ref|YP_005921010.1| - 1.3e-18 67.6 0.3 2.7e-18 66.7 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|386002711|ref|YP_005921010.1| - 2.3e-06 27.8 0.0 4.6e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|386002711|ref|YP_005921010.1| - 0.042 13.9 0.0 0.089 12.9 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain GTP_EFTU PF00009.22 gi|386002712|ref|YP_005921011.1| - 2.4e-16 59.7 0.0 1.2e-07 31.3 0.0 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|386002712|ref|YP_005921011.1| - 1.1e-15 57.5 0.0 1.5e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|386002712|ref|YP_005921011.1| - 1.3e-05 24.5 0.1 4e-05 22.9 0.1 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.16 gi|386002712|ref|YP_005921011.1| - 1.7e-05 24.1 0.0 0.03 13.5 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family Miro PF08477.8 gi|386002712|ref|YP_005921011.1| - 9.1e-05 22.9 0.0 0.0016 18.9 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein AAA_17 PF13207.1 gi|386002712|ref|YP_005921011.1| - 0.00012 22.8 0.1 0.00033 21.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain SRPRB PF09439.5 gi|386002712|ref|YP_005921011.1| - 0.00056 19.1 0.0 0.11 11.6 0.0 2.3 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit Septin PF00735.13 gi|386002712|ref|YP_005921011.1| - 0.0027 16.7 0.0 0.004 16.2 0.0 1.2 1 0 0 1 1 1 1 Septin ArgK PF03308.11 gi|386002712|ref|YP_005921011.1| - 0.0029 16.4 0.0 0.43 9.2 0.0 2.6 2 1 0 2 2 2 1 ArgK protein AAA PF00004.24 gi|386002712|ref|YP_005921011.1| - 0.0034 17.5 0.0 0.0064 16.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|386002712|ref|YP_005921011.1| - 0.0043 16.7 0.0 0.0058 16.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase DUF258 PF03193.11 gi|386002712|ref|YP_005921011.1| - 0.0047 16.1 0.0 0.0078 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|386002712|ref|YP_005921011.1| - 0.0057 16.9 0.0 0.011 16.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|386002712|ref|YP_005921011.1| - 0.0069 16.1 0.0 0.0094 15.6 0.0 1.3 1 0 0 1 1 1 1 NTPase AAA_22 PF13401.1 gi|386002712|ref|YP_005921011.1| - 0.0072 16.4 0.0 0.031 14.4 0.0 2.0 1 1 1 2 2 2 1 AAA domain Parvo_NS1 PF01057.12 gi|386002712|ref|YP_005921011.1| - 0.015 14.1 0.1 0.024 13.5 0.1 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 cobW PF02492.14 gi|386002712|ref|YP_005921011.1| - 0.035 13.5 0.1 0.13 11.7 0.1 2.0 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.17 gi|386002712|ref|YP_005921011.1| - 0.036 14.2 0.0 0.068 13.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Dynamin_N PF00350.18 gi|386002712|ref|YP_005921011.1| - 0.049 13.4 0.0 8.9 6.0 0.0 2.2 1 1 1 2 2 2 0 Dynamin family AAA_28 PF13521.1 gi|386002712|ref|YP_005921011.1| - 0.049 13.5 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|386002712|ref|YP_005921011.1| - 0.059 12.2 0.0 0.095 11.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.1 gi|386002712|ref|YP_005921011.1| - 0.062 12.6 0.1 0.17 11.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|386002712|ref|YP_005921011.1| - 0.073 12.4 0.1 0.12 11.8 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain UPF0150 PF03681.10 gi|386002712|ref|YP_005921011.1| - 0.075 12.6 0.3 0.15 11.7 0.2 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) NACHT PF05729.7 gi|386002712|ref|YP_005921011.1| - 0.099 12.2 0.0 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 NACHT domain MobB PF03205.9 gi|386002712|ref|YP_005921011.1| - 0.1 12.3 0.0 0.25 11.0 0.0 1.7 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|386002712|ref|YP_005921011.1| - 0.11 12.0 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|386002712|ref|YP_005921011.1| - 0.13 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|386002712|ref|YP_005921011.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.3 1 1 0 1 1 1 0 ABC transporter AAA_16 PF13191.1 gi|386002712|ref|YP_005921011.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain DUF2073 PF09846.4 gi|386002713|ref|YP_005921012.1| - 1.3e-42 143.7 3.3 1.4e-42 143.5 2.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF2072 PF09845.4 gi|386002714|ref|YP_005921013.1| - 1.3e-26 93.0 0.3 8e-18 64.6 0.0 2.3 2 1 0 2 2 2 2 Zn-ribbon containing protein (DUF2072) Phyto-Amp PF15438.1 gi|386002716|ref|YP_005921015.1| - 0.0045 16.6 0.2 0.0065 16.1 0.1 1.3 1 0 0 1 1 1 1 Antigenic membrane protein of phytoplasma Reo_sigmaC PF04582.7 gi|386002716|ref|YP_005921015.1| - 0.055 12.6 0.0 0.083 12.0 0.0 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein AKAP28 PF14469.1 gi|386002716|ref|YP_005921015.1| - 0.23 11.0 0.7 21 4.7 0.4 2.1 2 0 0 2 2 2 0 28 kDa A-kinase anchor Thioredoxin_3 PF13192.1 gi|386002717|ref|YP_005921016.1| - 0.05 13.4 0.0 0.082 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain DUF953 PF06110.6 gi|386002717|ref|YP_005921016.1| - 0.087 12.2 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Rhodanese PF00581.15 gi|386002718|ref|YP_005921017.1| - 1.9e-19 70.0 0.0 5.5e-12 46.0 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain CitMHS PF03600.11 gi|386002719|ref|YP_005921018.1| - 6.7e-52 176.2 0.0 1.9e-36 125.3 0.0 1.5 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|386002719|ref|YP_005921018.1| - 2.1e-24 84.8 0.7 2.4e-11 43.0 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|386002719|ref|YP_005921018.1| - 4.8e-21 75.1 25.7 1.3e-11 44.0 6.7 2.4 3 0 0 3 3 3 2 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|386002720|ref|YP_005921019.1| - 3.7e-44 150.7 0.0 3.5e-29 101.4 0.0 2.2 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|386002720|ref|YP_005921019.1| - 8.4e-20 70.1 0.1 6.2e-12 44.9 0.0 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|386002720|ref|YP_005921019.1| - 2e-15 56.6 29.2 3.1e-12 46.1 7.9 2.2 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region MttA_Hcf106 PF02416.11 gi|386002720|ref|YP_005921019.1| - 0.7 9.0 0.0 0.7 9.0 0.0 2.8 3 0 0 3 3 3 0 mttA/Hcf106 family Rotamase PF00639.16 gi|386002721|ref|YP_005921020.1| - 2.4e-31 108.3 0.1 2.8e-31 108.1 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_3 PF13616.1 gi|386002721|ref|YP_005921020.1| - 3.9e-30 104.5 0.2 4.3e-30 104.3 0.1 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.1 gi|386002721|ref|YP_005921020.1| - 1.2e-12 48.4 0.1 1.4e-12 48.3 0.1 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain PAS_3 PF08447.6 gi|386002722|ref|YP_005921021.1| - 3.6e-38 129.5 0.1 1e-24 86.4 0.1 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|386002722|ref|YP_005921021.1| - 2.8e-32 111.1 0.0 6.6e-16 58.5 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|386002722|ref|YP_005921021.1| - 2e-24 85.5 0.0 2e-08 34.0 0.0 3.9 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.19 gi|386002722|ref|YP_005921021.1| - 1.4e-21 76.5 0.0 5.9e-21 74.5 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.5 gi|386002722|ref|YP_005921021.1| - 5.9e-20 71.3 1.2 1.4e-10 41.1 0.0 4.4 5 0 0 5 5 5 2 PAS fold PAS_8 PF13188.1 gi|386002722|ref|YP_005921021.1| - 6.9e-12 44.7 0.0 9.2e-05 22.1 0.0 3.3 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.1 gi|386002722|ref|YP_005921021.1| - 2.7e-09 37.6 0.1 6.7e-09 36.3 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|386002722|ref|YP_005921021.1| - 1e-08 35.3 0.0 1.1e-07 31.9 0.0 2.6 2 1 0 2 2 2 1 GAF domain PAS_10 PF13596.1 gi|386002722|ref|YP_005921021.1| - 4.8e-05 23.5 0.0 0.00032 20.9 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_11 PF14598.1 gi|386002722|ref|YP_005921021.1| - 0.00014 21.7 0.0 0.86 9.5 0.0 3.4 3 0 0 3 3 3 2 PAS domain GAF PF01590.21 gi|386002722|ref|YP_005921021.1| - 0.0012 18.9 0.0 0.0022 18.1 0.0 1.5 1 0 0 1 1 1 1 GAF domain NAD_binding_5 PF07994.7 gi|386002723|ref|YP_005921022.1| - 1.7e-55 188.6 0.0 4.3e-55 187.2 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|386002723|ref|YP_005921022.1| - 9.4e-34 115.6 0.0 1.8e-33 114.7 0.0 1.5 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase PDT PF00800.13 gi|386002724|ref|YP_005921023.1| - 1e-58 197.8 0.0 1.3e-58 197.5 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|386002724|ref|YP_005921023.1| - 8.1e-11 41.1 0.0 1.8e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 ACT domain SBP_bac_3 PF00497.15 gi|386002724|ref|YP_005921023.1| - 0.12 11.5 0.0 0.37 10.0 0.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 HMG-CoA_red PF00368.13 gi|386002725|ref|YP_005921024.1| - 5.7e-89 298.3 6.1 6.9e-89 298.0 4.2 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF98 PF01947.11 gi|386002726|ref|YP_005921025.1| - 6e-30 103.9 0.0 1.1e-29 103.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF98) GHMP_kinases_N PF00288.21 gi|386002726|ref|YP_005921025.1| - 6.7e-07 29.2 0.1 2.5e-06 27.4 0.1 2.1 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|386002726|ref|YP_005921025.1| - 2e-06 27.8 0.2 5.7e-06 26.4 0.1 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal UTRA PF07702.8 gi|386002726|ref|YP_005921025.1| - 0.03 13.9 0.7 0.07 12.7 0.5 1.6 1 1 0 1 1 1 0 UTRA domain Peptidase_M42 PF05343.9 gi|386002727|ref|YP_005921026.1| - 3.9e-103 344.2 0.2 4.6e-103 344.0 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|386002727|ref|YP_005921026.1| - 1.6e-12 47.3 0.1 2.5e-12 46.6 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|386002727|ref|YP_005921026.1| - 0.00016 20.3 0.1 0.00056 18.5 0.0 1.8 2 1 0 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) Usp PF00582.21 gi|386002728|ref|YP_005921027.1| - 1.3e-36 125.8 6.6 1.5e-36 125.6 4.6 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|386002728|ref|YP_005921027.1| - 0.026 13.8 0.4 0.061 12.6 0.2 1.6 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel UPF0172 PF03665.8 gi|386002728|ref|YP_005921027.1| - 0.04 13.4 0.2 0.049 13.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0172) ABC_sub_bind PF04392.7 gi|386002728|ref|YP_005921027.1| - 0.044 12.7 1.1 0.048 12.6 0.8 1.1 1 0 0 1 1 1 0 ABC transporter substrate binding protein DUF3197 PF11432.3 gi|386002728|ref|YP_005921027.1| - 0.046 13.7 0.6 0.094 12.7 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3197) HK97-gp10_like PF04883.7 gi|386002728|ref|YP_005921027.1| - 0.068 14.1 0.1 0.13 13.2 0.1 1.5 1 0 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component AAA_25 PF13481.1 gi|386002728|ref|YP_005921027.1| - 0.081 12.3 0.4 0.11 11.8 0.3 1.3 1 0 0 1 1 1 0 AAA domain IF3_N PF05198.11 gi|386002728|ref|YP_005921027.1| - 0.14 12.0 3.4 5 7.1 0.2 2.7 1 1 1 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Usp PF00582.21 gi|386002729|ref|YP_005921028.1| - 2.3e-30 105.5 0.7 2.7e-30 105.4 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family AIRC PF00731.15 gi|386002730|ref|YP_005921029.1| - 1.3e-42 144.6 0.1 1.4e-42 144.4 0.1 1.0 1 0 0 1 1 1 1 AIR carboxylase TrmB PF01978.14 gi|386002730|ref|YP_005921029.1| - 0.11 12.1 0.1 7.6 6.3 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB CM_2 PF01817.16 gi|386002731|ref|YP_005921030.1| - 2e-16 59.8 2.4 2.3e-16 59.6 1.6 1.0 1 0 0 1 1 1 1 Chorismate mutase type II GHMP_kinases_N PF00288.21 gi|386002732|ref|YP_005921031.1| - 2.2e-11 43.6 1.8 2.2e-11 43.6 1.2 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|386002732|ref|YP_005921031.1| - 0.014 15.5 0.1 0.043 14.0 0.0 1.8 1 0 0 1 1 1 0 GHMP kinases C terminal DUF3280 PF11684.3 gi|386002733|ref|YP_005921032.1| - 0.14 12.3 0.0 0.41 10.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2380) DUF3467 PF11950.3 gi|386002734|ref|YP_005921033.1| - 1.3e-18 66.7 0.0 1.5e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) RRF_GI PF12614.3 gi|386002734|ref|YP_005921033.1| - 0.03 14.1 0.0 0.064 13.0 0.0 1.5 1 1 0 1 1 1 0 Ribosome recycling factor FAD_oxidored PF12831.2 gi|386002735|ref|YP_005921034.1| - 3e-10 39.7 1.3 3e-10 39.7 0.9 2.0 2 0 0 2 2 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|386002735|ref|YP_005921034.1| - 7.8e-07 28.3 6.6 0.00023 20.1 0.2 2.5 2 1 1 3 3 3 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|386002735|ref|YP_005921034.1| - 9.4e-06 24.8 0.2 0.0013 17.9 0.0 3.0 3 0 0 3 3 3 1 Thi4 family Lycopene_cycl PF05834.7 gi|386002735|ref|YP_005921034.1| - 1.2e-05 24.4 0.1 2.5e-05 23.3 0.0 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|386002735|ref|YP_005921034.1| - 0.00035 19.7 0.0 0.00064 18.8 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|386002735|ref|YP_005921034.1| - 0.00037 19.0 0.4 0.00057 18.4 0.3 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|386002735|ref|YP_005921034.1| - 0.00052 18.9 0.4 0.0026 16.6 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|386002735|ref|YP_005921034.1| - 0.00087 19.2 1.2 0.00096 19.0 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|386002735|ref|YP_005921034.1| - 0.0018 17.2 0.1 0.0018 17.2 0.1 2.0 2 0 0 2 2 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|386002735|ref|YP_005921034.1| - 0.0027 16.4 0.8 0.012 14.3 0.0 1.9 2 0 0 2 2 2 1 Tryptophan halogenase DUF1424 PF07232.6 gi|386002735|ref|YP_005921034.1| - 0.027 13.2 0.0 0.035 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative rep protein (DUF1424) NAD_binding_8 PF13450.1 gi|386002735|ref|YP_005921034.1| - 0.052 13.5 0.1 0.052 13.5 0.1 2.9 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain YcfA PF07927.7 gi|386002736|ref|YP_005921035.1| - 7.3e-10 38.6 0.1 1e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 YcfA-like protein UPF0150 PF03681.10 gi|386002737|ref|YP_005921036.1| - 5.3e-11 41.9 0.1 6.9e-11 41.6 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Herpes_LMP1 PF05297.6 gi|386002738|ref|YP_005921037.1| - 0.98 8.2 5.5 1.1 8.0 3.8 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) NACHT PF05729.7 gi|386002739|ref|YP_005921038.1| - 6.9e-13 48.5 0.0 1.2e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.1 gi|386002739|ref|YP_005921038.1| - 3.1e-05 24.0 1.1 0.0057 16.6 0.0 3.2 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|386002739|ref|YP_005921038.1| - 7.4e-05 22.9 0.0 0.00037 20.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|386002739|ref|YP_005921038.1| - 8e-05 22.3 0.0 0.00042 20.0 0.0 2.1 3 0 0 3 3 2 1 Part of AAA domain AAA_18 PF13238.1 gi|386002739|ref|YP_005921038.1| - 0.0011 19.2 0.0 0.0027 18.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|386002739|ref|YP_005921038.1| - 0.0012 19.6 0.1 0.0039 17.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|386002739|ref|YP_005921038.1| - 0.0013 18.9 0.0 0.0068 16.6 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|386002739|ref|YP_005921038.1| - 0.0029 17.0 0.0 0.0089 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|386002739|ref|YP_005921038.1| - 0.0091 16.3 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_10 PF12846.2 gi|386002739|ref|YP_005921038.1| - 0.0097 15.3 0.0 0.024 14.0 0.0 1.9 2 1 0 2 2 2 1 AAA-like domain AAA_11 PF13086.1 gi|386002739|ref|YP_005921038.1| - 0.022 14.3 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|386002739|ref|YP_005921038.1| - 0.049 12.7 0.0 0.11 11.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF87 PF01935.12 gi|386002739|ref|YP_005921038.1| - 0.051 13.3 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|386002739|ref|YP_005921038.1| - 0.054 12.9 0.0 0.16 11.3 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF2075 PF09848.4 gi|386002739|ref|YP_005921038.1| - 0.071 12.0 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|386002739|ref|YP_005921038.1| - 0.08 12.5 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain UvrD-helicase PF00580.16 gi|386002739|ref|YP_005921038.1| - 0.12 11.6 0.0 0.22 10.7 0.0 1.4 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.13 gi|386002739|ref|YP_005921038.1| - 0.14 11.6 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase GvpD PF07088.6 gi|386002739|ref|YP_005921038.1| - 0.16 10.2 0.0 0.22 9.7 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein KAP_NTPase PF07693.9 gi|386002739|ref|YP_005921038.1| - 0.16 10.9 0.0 4.6 6.1 0.0 2.5 2 1 1 3 3 3 0 KAP family P-loop domain DUF4118 PF13493.1 gi|386002739|ref|YP_005921038.1| - 1.4 9.1 6.9 0.17 12.0 1.8 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4118) DUF1016 PF06250.6 gi|386002740|ref|YP_005921039.1| - 1.1e-74 251.3 0.0 1.2e-74 251.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1016) Rnk_N PF14760.1 gi|386002740|ref|YP_005921039.1| - 0.0055 16.7 1.0 0.018 15.0 0.7 1.8 1 0 0 1 1 1 1 Rnk N-terminus FtsJ PF01728.14 gi|386002741|ref|YP_005921040.1| - 1.2e-57 194.7 0.0 1.4e-57 194.5 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.1 gi|386002741|ref|YP_005921040.1| - 1.1e-05 25.1 0.0 2.4e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386002741|ref|YP_005921040.1| - 1.9e-05 24.3 0.0 0.00041 19.9 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain TRAM PF01938.15 gi|386002741|ref|YP_005921040.1| - 3.1e-05 23.6 0.9 6.4e-05 22.6 0.6 1.6 1 0 0 1 1 1 1 TRAM domain Methyltransf_18 PF12847.2 gi|386002741|ref|YP_005921040.1| - 3.4e-05 24.3 0.2 0.00053 20.5 0.1 2.2 1 1 0 1 1 1 1 Methyltransferase domain NNMT_PNMT_TEMT PF01234.12 gi|386002741|ref|YP_005921040.1| - 0.0016 17.4 0.0 0.15 10.9 0.0 2.1 2 0 0 2 2 2 2 NNMT/PNMT/TEMT family Methyltransf_26 PF13659.1 gi|386002741|ref|YP_005921040.1| - 0.0047 16.9 0.1 0.038 14.0 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386002741|ref|YP_005921040.1| - 0.035 14.6 0.1 0.44 11.0 0.1 2.3 1 1 0 1 1 1 0 Methyltransferase domain PGM_PMM_I PF02878.11 gi|386002742|ref|YP_005921041.1| - 7.2e-26 90.3 0.0 1e-25 89.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|386002742|ref|YP_005921041.1| - 3.3e-17 62.6 0.1 6.6e-17 61.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|386002742|ref|YP_005921041.1| - 1.9e-15 56.9 0.0 3.1e-15 56.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|386002742|ref|YP_005921041.1| - 1.3e-10 41.1 0.1 3.1e-10 39.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Glycos_transf_2 PF00535.21 gi|386002743|ref|YP_005921042.1| - 8.8e-16 58.0 0.0 1.4e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|386002743|ref|YP_005921042.1| - 3.3e-09 36.8 0.0 4.7e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|386002743|ref|YP_005921042.1| - 0.00074 19.7 0.0 0.0012 19.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Transpep_BrtH PF14399.1 gi|386002743|ref|YP_005921042.1| - 0.026 13.8 0.0 0.042 13.1 0.0 1.3 1 0 0 1 1 1 0 NlpC/p60-like transpeptidase NAD_binding_1 PF00175.16 gi|386002744|ref|YP_005921043.1| - 1.8e-15 57.4 0.0 2.9e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|386002744|ref|YP_005921043.1| - 2.2e-13 49.4 3.2 3.8e-13 48.6 2.3 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|386002744|ref|YP_005921043.1| - 1.6e-07 31.3 0.0 2.7e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_8 PF08022.7 gi|386002744|ref|YP_005921043.1| - 0.096 12.5 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 FAD-binding domain Fer4_18 PF13746.1 gi|386002745|ref|YP_005921044.1| - 6.6e-08 32.8 6.6 1.8e-07 31.4 2.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386002745|ref|YP_005921044.1| - 1.6e-07 31.5 4.5 0.0014 18.9 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386002745|ref|YP_005921044.1| - 1.3e-06 28.7 4.4 0.028 14.8 0.2 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002745|ref|YP_005921044.1| - 2.1e-06 27.6 12.1 4.1e-05 23.5 8.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386002745|ref|YP_005921044.1| - 0.00044 19.9 15.3 0.025 14.4 0.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|386002745|ref|YP_005921044.1| - 0.0015 18.3 13.2 0.023 14.5 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386002745|ref|YP_005921044.1| - 0.0029 17.3 13.8 0.025 14.3 9.6 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386002745|ref|YP_005921044.1| - 0.0058 16.8 15.6 0.16 12.2 11.2 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386002745|ref|YP_005921044.1| - 0.067 12.8 20.4 0.27 10.9 2.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|386002745|ref|YP_005921044.1| - 0.25 12.0 22.9 0.38 11.4 3.0 3.1 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386002745|ref|YP_005921044.1| - 0.61 10.8 10.8 0.81 10.4 0.2 2.5 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|386002745|ref|YP_005921044.1| - 1.1 9.7 21.9 0.47 10.9 1.5 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Molybdopterin PF00384.17 gi|386002746|ref|YP_005921045.1| - 4.3e-82 276.1 0.0 5e-82 275.9 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|386002746|ref|YP_005921045.1| - 2e-31 108.0 0.0 4e-31 107.0 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|386002746|ref|YP_005921045.1| - 3.4e-18 65.2 0.6 6.9e-18 64.2 0.4 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain MMR_HSR1 PF01926.18 gi|386002753|ref|YP_005921052.1| - 5.5e-14 52.1 0.0 8.4e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|386002753|ref|YP_005921052.1| - 1.9e-12 46.7 0.1 1e-11 44.3 0.0 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|386002753|ref|YP_005921052.1| - 0.0063 16.3 0.0 0.85 9.4 0.1 2.2 1 1 1 2 2 2 1 Dynamin family GTP_EFTU PF00009.22 gi|386002753|ref|YP_005921052.1| - 0.023 14.1 0.0 1.9 7.9 0.0 2.3 1 1 0 2 2 2 0 Elongation factor Tu GTP binding domain MobB PF03205.9 gi|386002753|ref|YP_005921052.1| - 0.025 14.2 0.0 0.045 13.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|386002753|ref|YP_005921052.1| - 0.044 14.0 0.1 0.092 13.0 0.1 1.4 1 0 0 1 1 1 0 ABC transporter DUF258 PF03193.11 gi|386002753|ref|YP_005921052.1| - 0.048 12.8 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|386002753|ref|YP_005921052.1| - 0.078 13.8 0.0 0.16 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|386002753|ref|YP_005921052.1| - 0.088 12.3 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|386002753|ref|YP_005921052.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Ras PF00071.17 gi|386002753|ref|YP_005921052.1| - 0.16 11.3 0.1 2.5 7.4 0.1 2.1 2 0 0 2 2 2 0 Ras family SRPRB PF09439.5 gi|386002753|ref|YP_005921052.1| - 0.18 11.0 0.0 0.31 10.2 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit MS_channel PF00924.13 gi|386002754|ref|YP_005921053.1| - 7.3e-47 159.3 0.1 7.3e-47 159.3 0.0 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|386002754|ref|YP_005921053.1| - 0.027 14.1 3.8 0.07 12.8 2.6 1.7 1 0 0 1 1 1 0 Conserved TM helix NosD PF05048.8 gi|386002755|ref|YP_005921054.1| - 1.7e-60 204.1 59.8 3e-43 147.6 22.8 2.0 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|386002755|ref|YP_005921054.1| - 9.7e-31 106.6 50.6 2.3e-23 82.6 15.4 2.1 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|386002755|ref|YP_005921054.1| - 1.1e-06 28.0 27.7 1.9e-06 27.2 8.5 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) AAA PF00004.24 gi|386002756|ref|YP_005921055.1| - 3.4e-43 147.0 0.2 8.5e-43 145.7 0.0 1.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|386002756|ref|YP_005921055.1| - 1.2e-05 25.0 0.6 9.8e-05 22.0 0.1 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|386002756|ref|YP_005921055.1| - 3e-05 24.0 0.0 5.3e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.9 gi|386002756|ref|YP_005921055.1| - 4.9e-05 23.3 0.2 0.0002 21.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|386002756|ref|YP_005921055.1| - 5.8e-05 23.2 0.1 0.0014 18.8 0.1 2.6 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|386002756|ref|YP_005921055.1| - 0.00014 20.9 0.0 0.00034 19.7 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|386002756|ref|YP_005921055.1| - 0.00018 21.1 0.1 0.00043 19.9 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|386002756|ref|YP_005921055.1| - 0.00077 20.2 0.2 0.002 18.9 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|386002756|ref|YP_005921055.1| - 0.00099 19.0 0.0 0.0035 17.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|386002756|ref|YP_005921055.1| - 0.0011 18.4 0.1 0.0023 17.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|386002756|ref|YP_005921055.1| - 0.0015 17.3 0.0 0.0034 16.1 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_18 PF13238.1 gi|386002756|ref|YP_005921055.1| - 0.004 17.4 0.2 0.038 14.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|386002756|ref|YP_005921055.1| - 0.0065 16.3 0.0 0.021 14.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|386002756|ref|YP_005921055.1| - 0.009 16.0 0.0 0.056 13.4 0.0 2.2 2 1 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|386002756|ref|YP_005921055.1| - 0.0091 15.1 0.1 0.019 14.1 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|386002756|ref|YP_005921055.1| - 0.01 15.8 0.0 0.035 14.0 0.0 2.0 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|386002756|ref|YP_005921055.1| - 0.011 14.8 0.0 0.025 13.6 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|386002756|ref|YP_005921055.1| - 0.012 15.0 1.5 0.23 10.8 0.1 2.5 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|386002756|ref|YP_005921055.1| - 0.012 15.7 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.21 gi|386002756|ref|YP_005921055.1| - 0.013 14.9 0.0 0.083 12.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF3340 PF11818.3 gi|386002756|ref|YP_005921055.1| - 0.024 14.5 2.5 0.046 13.6 1.7 1.4 1 0 0 1 1 1 0 C-terminal domain of tail specific protease (DUF3340) PhoH PF02562.11 gi|386002756|ref|YP_005921055.1| - 0.034 13.3 0.1 0.1 11.8 0.0 1.8 2 0 0 2 2 1 0 PhoH-like protein AAA_24 PF13479.1 gi|386002756|ref|YP_005921055.1| - 0.037 13.5 0.0 0.082 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|386002756|ref|YP_005921055.1| - 0.045 13.3 1.2 1.2 8.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|386002756|ref|YP_005921055.1| - 0.061 12.1 0.2 0.15 10.9 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 APG6 PF04111.7 gi|386002756|ref|YP_005921055.1| - 0.15 11.1 4.2 0.22 10.5 2.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Ax_dynein_light PF10211.4 gi|386002756|ref|YP_005921055.1| - 0.29 10.9 8.0 0.5 10.1 5.5 1.3 1 0 0 1 1 1 0 Axonemal dynein light chain ABC_tran PF00005.22 gi|386002756|ref|YP_005921055.1| - 0.3 11.4 1.3 0.63 10.3 0.0 2.1 2 1 0 2 2 2 0 ABC transporter HALZ PF02183.13 gi|386002756|ref|YP_005921055.1| - 0.35 10.6 4.8 1.5 8.6 1.1 2.4 2 0 0 2 2 2 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|386002756|ref|YP_005921055.1| - 0.4 10.6 3.8 1.1 9.1 1.4 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) AdoMet_Synthase PF01941.14 gi|386002757|ref|YP_005921056.1| - 9e-121 403.0 0.4 1.1e-120 402.8 0.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) bact-PGI_C PF10432.4 gi|386002757|ref|YP_005921056.1| - 0.0065 16.1 0.1 2.7 7.6 0.0 2.6 2 1 0 2 2 2 2 Bacterial phospho-glucose isomerase C-terminal region Nup35_RRM_2 PF14605.1 gi|386002757|ref|YP_005921056.1| - 0.054 13.2 0.2 0.23 11.2 0.0 2.1 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif S-AdoMet_synt_N PF00438.15 gi|386002757|ref|YP_005921056.1| - 0.074 13.2 0.3 0.51 10.5 0.0 2.3 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain Gas_vesicle_C PF01304.12 gi|386002758|ref|YP_005921057.1| - 0.11 12.0 1.3 0.23 11.1 0.9 1.5 1 0 0 1 1 1 0 Gas vesicles protein GVPc repeated domain Enolase_C PF00113.17 gi|386002759|ref|YP_005921058.1| - 1.8e-108 362.0 0.1 2.3e-108 361.6 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|386002759|ref|YP_005921058.1| - 1.8e-57 192.9 0.2 9.5e-57 190.5 0.0 2.0 2 0 0 2 2 2 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|386002759|ref|YP_005921058.1| - 0.012 14.6 0.0 0.02 13.8 0.0 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus MR_MLE_C PF13378.1 gi|386002759|ref|YP_005921058.1| - 0.038 13.9 0.0 0.087 12.8 0.0 1.6 1 0 0 1 1 1 0 Enolase C-terminal domain-like WD40 PF00400.27 gi|386002760|ref|YP_005921059.1| - 7.9e-148 475.7 24.8 1.4e-10 40.6 0.0 14.4 14 0 0 14 14 14 13 WD domain, G-beta repeat NB-ARC PF00931.17 gi|386002760|ref|YP_005921059.1| - 7.4e-44 149.7 0.0 1.3e-43 148.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain TIR_2 PF13676.1 gi|386002760|ref|YP_005921059.1| - 1.9e-27 95.3 0.0 8.8e-27 93.2 0.0 2.3 1 0 0 1 1 1 1 TIR domain Nup160 PF11715.3 gi|386002760|ref|YP_005921059.1| - 2.7e-16 58.8 35.6 0.053 11.6 0.1 11.9 2 2 11 13 13 13 7 Nucleoporin Nup120/160 Cytochrom_D1 PF02239.11 gi|386002760|ref|YP_005921059.1| - 8.6e-12 44.0 3.8 0.008 14.5 0.0 5.4 3 2 1 5 5 5 4 Cytochrome D1 heme domain Nucleoporin_N PF08801.6 gi|386002760|ref|YP_005921059.1| - 2.6e-09 36.3 0.2 0.13 10.9 0.1 6.7 1 1 3 4 4 4 3 Nup133 N terminal like Nudix_N PF12535.3 gi|386002760|ref|YP_005921059.1| - 3e-06 26.6 0.0 5.8 6.4 0.0 5.2 7 0 0 7 7 7 3 Hydrolase of X-linked nucleoside diphosphate N terminal UN_NPL4 PF11543.3 gi|386002760|ref|YP_005921059.1| - 0.0021 18.3 0.0 33 4.8 0.0 5.4 6 1 0 6 6 6 0 Nuclear pore localisation protein NPL4 TIR PF01582.15 gi|386002760|ref|YP_005921059.1| - 0.0033 16.8 0.0 0.0063 15.9 0.0 1.5 1 0 0 1 1 1 1 TIR domain MMS1_N PF10433.4 gi|386002760|ref|YP_005921059.1| - 0.0099 14.0 0.0 83 1.1 0.0 5.4 4 2 1 6 6 6 0 Mono-functional DNA-alkylating methyl methanesulfonate N-term DUF488 PF04343.8 gi|386002761|ref|YP_005921060.1| - 2.9e-05 24.4 0.1 3.3e-05 24.2 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function, DUF488 DNA_topoisoIV PF00521.15 gi|386002762|ref|YP_005921061.1| - 3.5e-157 523.6 0.0 4.3e-157 523.3 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|386002762|ref|YP_005921061.1| - 9.6e-62 204.0 14.3 2.4e-14 52.3 0.3 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller LigA PF07746.6 gi|386002762|ref|YP_005921061.1| - 0.084 12.8 0.1 0.21 11.6 0.1 1.6 1 0 0 1 1 1 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DNA_gyraseB PF00204.20 gi|386002763|ref|YP_005921062.1| - 6e-61 204.6 0.2 9.1e-61 204.0 0.1 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|386002763|ref|YP_005921062.1| - 2.7e-31 107.1 0.4 5.4e-31 106.1 0.3 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|386002763|ref|YP_005921062.1| - 3.1e-27 94.4 0.0 6.4e-27 93.4 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|386002763|ref|YP_005921062.1| - 2.2e-17 62.7 0.0 5e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|386002763|ref|YP_005921062.1| - 0.0039 16.8 0.0 0.0079 15.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.1 gi|386002763|ref|YP_005921062.1| - 0.0079 16.1 0.0 0.033 14.2 0.0 2.1 1 1 0 1 1 1 1 Toprim domain DUF35 PF01796.12 gi|386002764|ref|YP_005921063.1| - 1.7e-20 72.9 0.0 2.3e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|386002764|ref|YP_005921063.1| - 1.7e-11 43.6 3.0 1.7e-11 43.6 1.2 1.7 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|386002764|ref|YP_005921063.1| - 0.047 13.5 1.9 0.08 12.7 1.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|386002764|ref|YP_005921063.1| - 0.066 12.9 1.2 2.8 7.7 0.0 2.8 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_5 PF13719.1 gi|386002764|ref|YP_005921063.1| - 0.24 10.9 2.0 3 7.4 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|386002764|ref|YP_005921063.1| - 0.27 10.9 2.2 2.8 7.7 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Thiolase_C PF02803.13 gi|386002765|ref|YP_005921064.1| - 5.7e-12 45.1 0.4 1.6e-11 43.6 0.2 1.8 1 1 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|386002765|ref|YP_005921064.1| - 4.4e-10 38.9 0.5 2.5e-08 33.2 0.1 2.3 2 0 0 2 2 2 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|386002765|ref|YP_005921064.1| - 1.6e-05 24.4 7.3 8.6e-05 22.1 3.7 2.9 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|386002765|ref|YP_005921064.1| - 0.011 15.5 0.3 0.78 9.5 0.0 2.6 2 0 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|386002765|ref|YP_005921064.1| - 0.13 11.9 3.2 3.9 7.2 0.0 2.8 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.5 gi|386002766|ref|YP_005921065.1| - 4.1e-09 36.3 0.0 7.2e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|386002766|ref|YP_005921065.1| - 8.2e-05 22.2 0.0 0.001 18.6 0.0 2.0 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|386002766|ref|YP_005921065.1| - 0.062 12.8 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A synthase N terminal DUF46 PF01864.12 gi|386002768|ref|YP_005921067.1| - 5.1e-52 176.2 4.0 5.7e-52 176.1 2.8 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|386002768|ref|YP_005921067.1| - 1.1e-07 31.8 2.6 1.1e-07 31.8 1.8 2.2 2 1 0 2 2 2 1 Cytidylyltransferase family PetM PF08041.6 gi|386002768|ref|YP_005921067.1| - 1.7 8.1 8.5 1.3 8.5 1.5 3.0 2 0 0 2 2 2 0 PetM family of cytochrome b6f complex subunit 7 Gly-zipper_YMGG PF13441.1 gi|386002768|ref|YP_005921067.1| - 2 7.9 6.3 12 5.4 1.5 2.3 2 0 0 2 2 2 0 YMGG-like Gly-zipper MtrE PF04206.7 gi|386002769|ref|YP_005921068.1| - 1.1e-114 382.0 12.9 1.2e-114 381.8 8.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E DUF3899 PF13038.1 gi|386002769|ref|YP_005921068.1| - 0.38 10.9 2.2 0.67 10.1 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) DUF1003 PF06210.6 gi|386002769|ref|YP_005921068.1| - 1.5 8.7 3.5 30 4.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1003) Glycophorin_A PF01102.13 gi|386002769|ref|YP_005921068.1| - 1.8 8.3 6.4 8.3 6.2 0.0 3.2 2 1 1 3 3 3 0 Glycophorin A TPPK_C PF12555.3 gi|386002769|ref|YP_005921068.1| - 9.8 5.9 9.5 3.3 7.4 0.1 3.1 3 0 0 3 3 3 0 Thiamine pyrophosphokinase C terminal MtrD PF04207.7 gi|386002770|ref|YP_005921069.1| - 3.1e-90 301.4 22.3 3.8e-90 301.1 15.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.8 gi|386002771|ref|YP_005921070.1| - 2.9e-77 259.2 30.3 3.2e-77 259.1 21.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrB PF05440.7 gi|386002772|ref|YP_005921071.1| - 1.3e-29 102.0 0.0 1.4e-29 101.9 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrF PF09472.5 gi|386002772|ref|YP_005921071.1| - 0.081 12.1 1.2 0.4 9.9 0.8 2.0 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Lsr2 PF11774.3 gi|386002772|ref|YP_005921071.1| - 0.14 12.0 0.0 0.17 11.7 0.0 1.1 1 0 0 1 1 1 0 Lsr2 MtrG PF04210.8 gi|386002772|ref|YP_005921071.1| - 1.6 8.4 3.6 2.7 7.7 1.1 2.0 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G MtrA PF04208.9 gi|386002773|ref|YP_005921072.1| - 1.3e-77 259.2 1.2 1.8e-77 258.7 0.9 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|386002773|ref|YP_005921072.1| - 0.16 11.2 4.2 0.41 9.9 1.3 2.3 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.5 gi|386002774|ref|YP_005921073.1| - 4.2e-21 73.9 0.5 5e-21 73.7 0.3 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Syndecan PF01034.15 gi|386002774|ref|YP_005921073.1| - 0.0003 20.3 1.0 0.0004 19.9 0.7 1.2 1 0 0 1 1 1 1 Syndecan domain DUF1888 PF08985.6 gi|386002774|ref|YP_005921073.1| - 0.0055 16.3 0.0 0.0062 16.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1888) MtrG PF04210.8 gi|386002775|ref|YP_005921074.1| - 1.9e-25 88.2 0.6 2.2e-25 88.1 0.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G MtrH PF02007.13 gi|386002776|ref|YP_005921075.1| - 3.5e-130 433.3 1.5 3.9e-130 433.1 1.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit CxxCxxCC PF03692.10 gi|386002777|ref|YP_005921076.1| - 1.6e-12 47.7 0.0 2.9e-12 46.8 0.0 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Peptidase_S9 PF00326.16 gi|386002778|ref|YP_005921077.1| - 2.3e-44 151.1 0.0 3.5e-44 150.5 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|386002778|ref|YP_005921077.1| - 4.4e-12 45.9 0.0 5.9e-11 42.3 0.0 2.4 2 1 0 2 2 2 1 Alpha/beta hydrolase family DLH PF01738.13 gi|386002778|ref|YP_005921077.1| - 4.5e-10 39.1 0.0 3.8e-07 29.6 0.0 2.2 2 0 0 2 2 2 2 Dienelactone hydrolase family Peptidase_S15 PF02129.13 gi|386002778|ref|YP_005921077.1| - 5.7e-10 39.0 0.2 7.6e-09 35.3 0.1 2.3 2 1 1 3 3 3 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_3 PF07859.8 gi|386002778|ref|YP_005921077.1| - 0.00011 21.8 1.7 0.39 10.2 0.2 3.1 3 0 0 3 3 3 2 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|386002778|ref|YP_005921077.1| - 0.0016 18.1 0.0 0.0034 17.1 0.0 1.5 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DPPIV_N PF00930.16 gi|386002778|ref|YP_005921077.1| - 0.0017 17.0 0.0 0.058 11.9 0.0 2.6 3 0 0 3 3 3 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Hydrolase_4 PF12146.3 gi|386002778|ref|YP_005921077.1| - 0.0062 16.3 0.0 0.016 15.0 0.0 1.7 1 0 0 1 1 1 1 Putative lysophospholipase Esterase PF00756.15 gi|386002778|ref|YP_005921077.1| - 0.0096 15.3 0.0 0.021 14.2 0.0 1.5 2 0 0 2 2 2 1 Putative esterase AXE1 PF05448.7 gi|386002778|ref|YP_005921077.1| - 0.031 12.7 0.3 0.56 8.6 0.2 2.1 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) COesterase PF00135.23 gi|386002778|ref|YP_005921077.1| - 0.081 11.6 0.8 0.14 10.8 0.5 1.2 1 0 0 1 1 1 0 Carboxylesterase family Peptidase_M3 PF01432.15 gi|386002779|ref|YP_005921078.1| - 1.9e-16 60.1 7.8 1.9e-16 60.1 5.4 2.3 2 1 0 2 2 2 1 Peptidase family M3 Aminotran_1_2 PF00155.16 gi|386002780|ref|YP_005921079.1| - 4.1e-57 193.7 0.0 4.6e-57 193.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|386002780|ref|YP_005921079.1| - 5.1e-07 28.7 0.0 7.6e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|386002780|ref|YP_005921079.1| - 8.1e-07 28.3 0.0 1.3e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|386002780|ref|YP_005921079.1| - 3.9e-05 22.1 0.0 9.3e-05 20.8 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|386002780|ref|YP_005921079.1| - 0.0016 17.6 0.0 0.01 14.9 0.0 1.9 2 0 0 2 2 2 1 Beta-eliminating lyase Radical_SAM PF04055.16 gi|386002780|ref|YP_005921079.1| - 0.0086 16.2 0.1 0.093 12.8 0.0 2.5 3 0 0 3 3 3 1 Radical SAM superfamily Alliinase_C PF04864.8 gi|386002780|ref|YP_005921079.1| - 0.051 12.2 0.0 0.067 11.8 0.0 1.1 1 0 0 1 1 1 0 Allinase EPSP_synthase PF00275.15 gi|386002780|ref|YP_005921079.1| - 0.087 11.2 0.0 0.19 10.1 0.0 1.5 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KAP_NTPase PF07693.9 gi|386002781|ref|YP_005921080.1| - 1.2e-57 195.3 3.0 1.5e-56 191.7 2.1 2.2 1 1 0 1 1 1 1 KAP family P-loop domain AAA_22 PF13401.1 gi|386002781|ref|YP_005921080.1| - 2.6e-07 30.8 0.0 1.7e-06 28.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|386002781|ref|YP_005921080.1| - 6.2e-06 25.2 0.0 1.2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.1 gi|386002781|ref|YP_005921080.1| - 3.1e-05 24.0 0.0 7.8e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|386002781|ref|YP_005921080.1| - 5.1e-05 23.0 1.4 0.00021 21.0 1.0 2.0 1 1 0 1 1 1 1 Archaeal ATPase Elong_Iki1 PF10483.4 gi|386002781|ref|YP_005921080.1| - 0.00083 18.8 0.1 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 Elongator subunit Iki1 AAA PF00004.24 gi|386002781|ref|YP_005921080.1| - 0.0027 17.8 1.0 0.037 14.2 0.7 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|386002781|ref|YP_005921080.1| - 0.0045 16.8 0.1 2.5 8.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|386002781|ref|YP_005921080.1| - 0.0067 16.0 0.7 0.39 10.3 0.5 2.7 1 1 0 1 1 1 1 NACHT domain Mt_ATP-synt_D PF05873.7 gi|386002781|ref|YP_005921080.1| - 0.028 14.0 0.2 9.5 5.8 0.0 2.6 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) RNA_helicase PF00910.17 gi|386002781|ref|YP_005921080.1| - 0.058 13.5 0.1 4.5 7.4 0.0 2.7 2 0 0 2 2 2 0 RNA helicase ABC_tran PF00005.22 gi|386002781|ref|YP_005921080.1| - 0.085 13.1 0.0 0.76 10.0 0.0 2.4 2 1 0 2 2 2 0 ABC transporter DUF3647 PF12363.3 gi|386002781|ref|YP_005921080.1| - 0.095 12.8 2.0 0.68 10.0 0.1 2.8 2 0 0 2 2 2 0 Phage protein cobW PF02492.14 gi|386002781|ref|YP_005921080.1| - 0.11 11.9 0.1 2.4 7.5 0.0 2.8 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain SMC_N PF02463.14 gi|386002781|ref|YP_005921080.1| - 0.13 11.5 0.1 0.74 8.9 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|386002781|ref|YP_005921080.1| - 0.14 11.7 0.0 0.35 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|386002781|ref|YP_005921080.1| - 0.65 10.8 4.7 0.69 10.7 0.0 3.4 3 2 0 3 3 2 0 AAA domain DNA_ligase_A_N PF04675.9 gi|386002781|ref|YP_005921080.1| - 0.85 9.4 3.8 4.5 7.0 0.3 3.1 3 0 0 3 3 3 0 DNA ligase N terminus AAA_10 PF12846.2 gi|386002781|ref|YP_005921080.1| - 1.3 8.4 4.9 12 5.2 0.1 2.9 2 1 1 3 3 3 0 AAA-like domain NTP_transf_2 PF01909.18 gi|386002782|ref|YP_005921081.1| - 1.7e-14 53.9 0.2 2.1e-14 53.6 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|386002782|ref|YP_005921081.1| - 0.0045 17.0 0.0 0.0058 16.6 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm PQQ_3 PF13570.1 gi|386002784|ref|YP_005921083.1| - 0.2 12.0 0.2 0.2 12.0 0.1 4.1 4 1 0 4 4 4 0 PQQ-like domain DUF4137 PF13593.1 gi|386002785|ref|YP_005921084.1| - 6.1e-10 38.6 12.9 9.2e-09 34.8 3.2 2.1 2 0 0 2 2 2 2 SBF-like CPA transporter family (DUF4137) SBF PF01758.11 gi|386002785|ref|YP_005921084.1| - 4.4e-06 26.2 7.9 4.4e-06 26.2 5.4 2.1 1 1 1 2 2 2 2 Sodium Bile acid symporter family TRAM PF01938.15 gi|386002786|ref|YP_005921085.1| - 1.8e-13 50.0 0.5 2.1e-13 49.8 0.3 1.1 1 0 0 1 1 1 1 TRAM domain ABC_tran PF00005.22 gi|386002787|ref|YP_005921086.1| - 6.3e-34 117.2 0.0 9.2e-34 116.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|386002787|ref|YP_005921086.1| - 1e-08 34.7 0.1 5.1e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|386002787|ref|YP_005921086.1| - 1.1e-06 28.8 0.1 0.003 17.5 0.3 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|386002787|ref|YP_005921086.1| - 2.3e-05 24.4 0.8 0.00016 21.7 0.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|386002787|ref|YP_005921086.1| - 4.3e-05 22.9 0.1 8.6e-05 21.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|386002787|ref|YP_005921086.1| - 4.5e-05 23.0 1.3 0.003 17.0 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|386002787|ref|YP_005921086.1| - 0.00039 19.6 0.0 0.0007 18.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|386002787|ref|YP_005921086.1| - 0.0015 18.6 0.3 0.032 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|386002787|ref|YP_005921086.1| - 0.0017 19.1 0.1 0.0042 17.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|386002787|ref|YP_005921086.1| - 0.0018 17.6 0.3 0.023 14.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|386002787|ref|YP_005921086.1| - 0.0038 16.3 0.0 0.32 9.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|386002787|ref|YP_005921086.1| - 0.0039 17.5 0.0 0.0067 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|386002787|ref|YP_005921086.1| - 0.0039 17.0 0.2 0.035 13.9 0.0 2.4 2 1 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|386002787|ref|YP_005921086.1| - 0.01 14.9 0.5 3.2 6.7 0.1 2.2 2 0 0 2 2 2 0 KaiC MobB PF03205.9 gi|386002787|ref|YP_005921086.1| - 0.015 15.0 0.2 0.057 13.1 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|386002787|ref|YP_005921086.1| - 0.02 14.5 0.0 0.42 10.2 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase NACHT PF05729.7 gi|386002787|ref|YP_005921086.1| - 0.038 13.6 0.2 0.12 11.9 0.1 1.8 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|386002787|ref|YP_005921086.1| - 0.039 13.9 1.3 0.1 12.5 0.9 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|386002787|ref|YP_005921086.1| - 0.05 13.5 0.0 0.45 10.4 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.14 gi|386002787|ref|YP_005921086.1| - 0.059 12.8 1.7 0.28 10.6 0.2 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.4 gi|386002787|ref|YP_005921086.1| - 0.065 11.8 0.1 0.12 10.9 0.1 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|386002787|ref|YP_005921086.1| - 0.07 11.9 0.4 0.14 10.9 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.1 gi|386002787|ref|YP_005921086.1| - 0.079 12.5 0.0 0.2 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|386002787|ref|YP_005921086.1| - 0.084 12.6 0.3 0.26 11.0 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_13 PF13166.1 gi|386002787|ref|YP_005921086.1| - 0.12 10.7 0.0 0.93 7.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain MacB_PCD PF12704.2 gi|386002788|ref|YP_005921087.1| - 6.8e-28 97.8 0.1 6.8e-28 97.8 0.1 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|386002788|ref|YP_005921087.1| - 7.8e-24 83.7 12.4 2.3e-23 82.2 7.1 2.1 2 0 0 2 2 2 1 FtsX-like permease family AbrB-like PF14250.1 gi|386002788|ref|YP_005921087.1| - 0.095 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 AbrB-like transcriptional regulator DUF1049 PF06305.6 gi|386002788|ref|YP_005921087.1| - 0.47 9.9 3.7 13 5.3 0.9 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) MacB_PCD PF12704.2 gi|386002789|ref|YP_005921088.1| - 3.2e-25 89.0 0.9 3.2e-25 89.0 0.6 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|386002789|ref|YP_005921088.1| - 1.1e-20 73.5 5.7 1.1e-20 73.5 4.0 2.2 2 0 0 2 2 2 1 FtsX-like permease family Herpes_US9 PF06072.6 gi|386002789|ref|YP_005921088.1| - 1.7 8.5 4.1 0.66 9.8 0.4 2.2 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 DeoC PF01791.4 gi|386002790|ref|YP_005921089.1| - 2.5e-53 180.7 0.0 2.9e-53 180.5 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|386002790|ref|YP_005921089.1| - 0.00054 19.4 0.0 0.00076 18.9 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.12 gi|386002790|ref|YP_005921089.1| - 0.068 12.2 0.0 4.9 6.2 0.0 2.4 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI Dehyd-heme_bind PF09098.5 gi|386002790|ref|YP_005921089.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding SIMPL PF04402.9 gi|386002791|ref|YP_005921090.1| - 1.8e-48 165.2 2.6 2e-48 165.0 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Big_2 PF02368.13 gi|386002791|ref|YP_005921090.1| - 2.2 8.2 6.5 9.6 6.1 0.1 2.6 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 2) DUF473 PF04322.7 gi|386002792|ref|YP_005921091.1| - 1.1e-39 134.7 0.1 1.3e-39 134.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) Aldolase PF01081.14 gi|386002792|ref|YP_005921091.1| - 0.081 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 KDPG and KHG aldolase PAC2 PF09754.4 gi|386002793|ref|YP_005921092.1| - 2.3e-49 168.2 0.0 2.8e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 PAC2 family GHMP_kinases_N PF00288.21 gi|386002793|ref|YP_005921092.1| - 0.052 13.6 0.3 0.18 11.8 0.0 2.0 3 0 0 3 3 3 0 GHMP kinases N terminal domain Glutaredoxin PF00462.19 gi|386002794|ref|YP_005921093.1| - 1.7e-11 43.8 0.0 2.4e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|386002794|ref|YP_005921093.1| - 6.4e-05 23.0 0.0 8.1e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|386002794|ref|YP_005921093.1| - 0.00024 21.0 0.0 0.00029 20.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|386002794|ref|YP_005921093.1| - 0.023 14.9 0.0 0.023 14.9 0.0 1.1 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.1 gi|386002794|ref|YP_005921093.1| - 0.093 12.9 0.0 0.098 12.8 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain FeThRed_B PF02943.10 gi|386002795|ref|YP_005921094.1| - 1.7e-24 85.6 0.1 2.6e-24 85.0 0.1 1.3 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.10 gi|386002795|ref|YP_005921094.1| - 0.0015 17.9 0.3 0.0033 16.8 0.2 1.6 1 0 0 1 1 1 1 RecR protein Rubredoxin PF00301.15 gi|386002795|ref|YP_005921094.1| - 0.96 9.3 8.7 5.1 7.0 0.5 2.9 1 1 1 2 2 2 0 Rubredoxin E1-E2_ATPase PF00122.15 gi|386002796|ref|YP_005921095.1| - 1.1e-62 211.1 0.5 1.9e-62 210.3 0.4 1.4 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|386002796|ref|YP_005921095.1| - 2.7e-50 171.7 3.5 6.5e-50 170.5 2.5 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|386002796|ref|YP_005921095.1| - 1.1e-31 108.7 1.6 3.8e-17 62.1 0.1 2.9 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|386002796|ref|YP_005921095.1| - 6.2e-15 55.8 0.0 1.3e-14 54.7 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|386002796|ref|YP_005921095.1| - 0.0013 18.3 0.2 0.034 13.7 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase YHS PF04945.8 gi|386002797|ref|YP_005921096.1| - 1.8e-19 69.2 1.9 1.9e-19 69.1 1.3 1.0 1 0 0 1 1 1 1 YHS domain ATPase-cat_bd PF12156.3 gi|386002797|ref|YP_005921096.1| - 0.0026 18.2 0.1 0.0028 18.1 0.1 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase Arc_trans_TRASH PF08394.5 gi|386002797|ref|YP_005921096.1| - 0.015 15.4 0.8 0.018 15.1 0.6 1.4 1 1 0 1 1 1 0 Archaeal TRASH domain Pyr_redox_2 PF07992.9 gi|386002798|ref|YP_005921097.1| - 8.2e-28 97.6 0.0 1.9e-27 96.4 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|386002798|ref|YP_005921097.1| - 7.1e-24 83.9 0.5 2.5e-23 82.2 0.2 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|386002798|ref|YP_005921097.1| - 3.7e-14 52.8 0.1 1e-13 51.4 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|386002798|ref|YP_005921097.1| - 1.6e-06 28.3 0.1 0.00012 22.1 0.0 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|386002798|ref|YP_005921097.1| - 0.13 10.6 3.2 3 6.2 0.0 2.5 3 0 0 3 3 3 0 HI0933-like protein dCMP_cyt_deam_1 PF00383.17 gi|386002799|ref|YP_005921098.1| - 2.1e-22 78.6 0.0 2.8e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|386002799|ref|YP_005921098.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 MafB19-like deaminase RecR PF02132.10 gi|386002799|ref|YP_005921098.1| - 1.3 8.5 3.4 1.7 8.1 0.6 2.1 2 0 0 2 2 2 0 RecR protein WD40 PF00400.27 gi|386002800|ref|YP_005921099.1| - 1.9e-47 157.4 23.2 4.2e-10 39.1 0.6 7.6 8 0 0 8 8 8 6 WD domain, G-beta repeat DUF4365 PF14280.1 gi|386002800|ref|YP_005921099.1| - 6.9e-23 80.8 0.1 1.2e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4365) Ras PF00071.17 gi|386002800|ref|YP_005921099.1| - 1.5e-17 63.4 0.0 2.9e-17 62.5 0.0 1.5 1 0 0 1 1 1 1 Ras family Nup160 PF11715.3 gi|386002800|ref|YP_005921099.1| - 1e-08 33.8 4.8 0.091 10.8 0.4 5.0 1 1 2 3 3 3 3 Nucleoporin Nup120/160 Arf PF00025.16 gi|386002800|ref|YP_005921099.1| - 6.7e-07 28.7 0.0 1.4e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|386002800|ref|YP_005921099.1| - 1.3e-06 28.9 0.0 3.9e-06 27.3 0.0 1.9 1 0 0 1 1 1 1 Miro-like protein Gmad1 PF10647.4 gi|386002800|ref|YP_005921099.1| - 0.023 14.1 0.7 0.076 12.3 0.2 1.9 2 0 0 2 2 2 0 Lipoprotein LpqB beta-propeller domain zf-DNL PF05180.7 gi|386002800|ref|YP_005921099.1| - 0.034 13.8 0.2 0.071 12.8 0.2 1.4 1 0 0 1 1 1 0 DNL zinc finger PD40 PF07676.7 gi|386002800|ref|YP_005921099.1| - 0.08 12.6 2.1 28 4.4 0.0 3.8 3 0 0 3 3 3 0 WD40-like Beta Propeller Repeat DZR PF12773.2 gi|386002800|ref|YP_005921099.1| - 0.14 12.0 0.4 0.33 10.8 0.3 1.6 1 0 0 1 1 1 0 Double zinc ribbon Methyltransf_31 PF13847.1 gi|386002801|ref|YP_005921100.1| - 3.7e-18 65.5 0.0 5.2e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386002801|ref|YP_005921100.1| - 7.1e-18 64.8 0.0 1.6e-17 63.8 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386002801|ref|YP_005921100.1| - 1.8e-12 47.8 0.0 3.4e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386002801|ref|YP_005921100.1| - 6.3e-12 45.8 0.0 9.9e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|386002801|ref|YP_005921100.1| - 2.3e-10 39.8 0.0 3.7e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_23 PF13489.1 gi|386002801|ref|YP_005921100.1| - 6.2e-10 39.0 0.0 8.1e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386002801|ref|YP_005921100.1| - 7.1e-10 38.4 0.0 1.1e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|386002801|ref|YP_005921100.1| - 9.6e-10 38.7 0.0 2.3e-09 37.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|386002801|ref|YP_005921100.1| - 2.5e-08 33.9 0.1 5.2e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|386002801|ref|YP_005921100.1| - 3.1e-07 29.9 0.0 5.1e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|386002801|ref|YP_005921100.1| - 0.00031 20.3 0.0 0.00044 19.8 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|386002801|ref|YP_005921100.1| - 0.00073 18.6 0.0 0.001 18.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.6 gi|386002801|ref|YP_005921100.1| - 0.0028 16.4 0.0 0.0038 15.9 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.15 gi|386002801|ref|YP_005921100.1| - 0.0071 15.4 0.0 0.009 15.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|386002801|ref|YP_005921100.1| - 0.018 13.7 0.0 0.029 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TPMT PF05724.6 gi|386002801|ref|YP_005921100.1| - 0.024 14.0 0.0 0.14 11.5 0.0 2.1 2 1 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|386002801|ref|YP_005921100.1| - 0.08 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) GCD14 PF08704.5 gi|386002801|ref|YP_005921100.1| - 0.15 11.5 0.0 0.21 11.0 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit OMPdecase PF00215.19 gi|386002802|ref|YP_005921101.1| - 1.7e-40 138.8 0.1 1.9e-40 138.6 0.1 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF1633 PF07794.6 gi|386002802|ref|YP_005921101.1| - 0.075 10.9 0.1 0.082 10.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) DUF77 PF01910.12 gi|386002803|ref|YP_005921102.1| - 9.8e-27 92.4 0.6 1.1e-26 92.3 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Sugar-bind PF04198.8 gi|386002803|ref|YP_005921102.1| - 0.024 13.5 0.6 0.15 10.9 0.4 1.9 1 1 0 1 1 1 0 Putative sugar-binding domain DUF498 PF04430.9 gi|386002803|ref|YP_005921102.1| - 0.034 13.6 0.1 1.4 8.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF498/DUF598) Fe-ADH_2 PF13685.1 gi|386002803|ref|YP_005921102.1| - 0.068 12.4 0.1 0.076 12.3 0.1 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase CTDII PF01556.13 gi|386002804|ref|YP_005921103.1| - 2.5e-30 104.2 0.1 5.7e-22 77.4 0.0 3.1 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|386002804|ref|YP_005921103.1| - 7e-28 96.1 2.7 1e-27 95.6 1.9 1.2 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|386002804|ref|YP_005921103.1| - 4.7e-16 58.5 20.0 8.4e-16 57.7 13.9 1.4 1 0 0 1 1 1 1 DnaJ central domain zf-FPG_IleRS PF06827.9 gi|386002804|ref|YP_005921103.1| - 1.7 8.3 10.3 0.23 11.1 0.7 2.7 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS HypA PF01155.14 gi|386002804|ref|YP_005921103.1| - 3.1 7.5 8.7 2.2 7.9 0.6 2.3 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|386002804|ref|YP_005921103.1| - 9.3 6.1 15.3 8.8 6.2 3.0 2.3 1 1 2 3 3 3 0 Double zinc ribbon HSP70 PF00012.15 gi|386002805|ref|YP_005921104.1| - 2.3e-224 745.8 12.4 3.5e-221 735.2 8.6 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|386002805|ref|YP_005921104.1| - 2.9e-17 62.2 6.0 2.9e-17 62.2 4.2 3.0 3 1 0 3 3 3 1 MreB/Mbl protein StbA PF06406.6 gi|386002805|ref|YP_005921104.1| - 0.0027 16.7 0.4 0.23 10.3 0.1 2.4 1 1 1 2 2 2 2 StbA protein Hydantoinase_A PF01968.13 gi|386002805|ref|YP_005921104.1| - 0.06 12.4 12.1 0.043 12.9 0.4 3.9 2 1 1 4 4 4 0 Hydantoinase/oxoprolinase Vfa1 PF08432.5 gi|386002805|ref|YP_005921104.1| - 0.095 12.7 13.9 0.16 12.0 9.6 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 GrpE PF01025.14 gi|386002806|ref|YP_005921105.1| - 4.5e-42 143.4 4.8 5.5e-42 143.1 3.3 1.2 1 0 0 1 1 1 1 GrpE PhoU PF01895.14 gi|386002806|ref|YP_005921105.1| - 0.015 15.7 2.0 0.025 15.0 1.4 1.4 1 0 0 1 1 1 0 PhoU domain Cpn60_TCP1 PF00118.19 gi|386002807|ref|YP_005921106.1| - 2.7e-158 527.5 4.4 3.1e-158 527.3 3.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PBP_like_2 PF12849.2 gi|386002808|ref|YP_005921107.1| - 1.8e-40 139.1 0.3 3.9e-40 138.1 0.2 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|386002808|ref|YP_005921107.1| - 1.1e-13 50.5 0.1 1.5e-13 50.1 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|386002808|ref|YP_005921107.1| - 6.9e-08 32.3 0.0 0.0093 15.6 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|386002808|ref|YP_005921107.1| - 0.03 13.4 0.0 0.05 12.6 0.0 1.5 1 0 0 1 1 1 0 LysR substrate binding domain SBP_bac_6 PF13343.1 gi|386002808|ref|YP_005921107.1| - 0.049 12.9 0.0 0.091 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein ABC_tran PF00005.22 gi|386002809|ref|YP_005921108.1| - 3.7e-32 111.4 0.0 5.1e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386002809|ref|YP_005921108.1| - 6.1e-16 59.2 0.0 1.1e-08 35.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|386002809|ref|YP_005921108.1| - 3.4e-06 26.4 0.1 9.7e-05 21.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|386002809|ref|YP_005921108.1| - 1.4e-05 25.2 0.0 5.5e-05 23.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|386002809|ref|YP_005921108.1| - 0.00011 21.3 0.0 0.00021 20.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|386002809|ref|YP_005921108.1| - 0.00071 19.0 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|386002809|ref|YP_005921108.1| - 0.001 18.9 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|386002809|ref|YP_005921108.1| - 0.0013 19.0 0.2 0.004 17.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|386002809|ref|YP_005921108.1| - 0.0016 18.4 0.0 0.014 15.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|386002809|ref|YP_005921108.1| - 0.0036 17.5 0.0 0.048 13.8 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|386002809|ref|YP_005921108.1| - 0.0037 16.0 0.0 0.005 15.5 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|386002809|ref|YP_005921108.1| - 0.017 15.9 0.1 0.028 15.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|386002809|ref|YP_005921108.1| - 0.02 13.4 0.0 0.18 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|386002809|ref|YP_005921108.1| - 0.021 14.7 0.0 0.57 10.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|386002809|ref|YP_005921108.1| - 0.021 13.9 0.0 0.047 12.7 0.0 1.5 1 0 0 1 1 1 0 KaiC AAA_25 PF13481.1 gi|386002809|ref|YP_005921108.1| - 0.024 14.0 0.0 0.056 12.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|386002809|ref|YP_005921108.1| - 0.026 13.1 0.0 1.1 7.7 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|386002809|ref|YP_005921108.1| - 0.038 13.6 0.0 0.31 10.6 0.0 2.0 1 1 0 2 2 2 0 Archaeal ATPase AAA_18 PF13238.1 gi|386002809|ref|YP_005921108.1| - 0.041 14.1 0.0 0.084 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|386002809|ref|YP_005921108.1| - 0.052 12.9 0.0 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|386002809|ref|YP_005921108.1| - 0.068 13.0 0.0 0.25 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|386002809|ref|YP_005921108.1| - 0.096 11.7 0.2 0.22 10.5 0.1 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_PrkA PF08298.6 gi|386002809|ref|YP_005921108.1| - 0.099 11.3 0.0 0.14 10.8 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain MobB PF03205.9 gi|386002809|ref|YP_005921108.1| - 0.11 12.1 0.2 0.81 9.3 0.0 2.2 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|386002809|ref|YP_005921108.1| - 0.12 12.2 0.2 1.4 8.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Adeno_IVa2 PF02456.10 gi|386002809|ref|YP_005921108.1| - 0.15 10.6 0.0 0.29 9.7 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein PhoU PF01895.14 gi|386002810|ref|YP_005921109.1| - 4.7e-40 135.9 7.4 8.3e-20 71.0 0.1 2.1 2 0 0 2 2 2 2 PhoU domain TBCA PF02970.11 gi|386002810|ref|YP_005921109.1| - 0.015 15.3 1.1 0.044 13.8 0.8 1.7 1 0 0 1 1 1 0 Tubulin binding cofactor A PhoU PF01895.14 gi|386002811|ref|YP_005921110.1| - 7.9e-23 80.7 10.0 2.4e-17 63.1 2.3 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|386002811|ref|YP_005921110.1| - 3.2e-06 26.7 0.1 3.3e-05 23.5 0.0 2.4 2 0 0 2 2 2 1 Antidote-toxin recognition MazE Endonuclease_5 PF04493.9 gi|386002812|ref|YP_005921111.1| - 3.2e-44 150.7 0.0 3.8e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DNA_binding_1 PF01035.15 gi|386002813|ref|YP_005921112.1| - 1.4e-27 95.2 0.0 2.1e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4 PF04545.11 gi|386002813|ref|YP_005921112.1| - 0.0058 15.9 0.0 0.0095 15.2 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Metallophos_2 PF12850.2 gi|386002814|ref|YP_005921113.1| - 2e-20 73.2 0.1 2.3e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|386002814|ref|YP_005921113.1| - 0.00017 21.0 0.6 0.076 12.4 0.4 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Imm29 PF15575.1 gi|386002815|ref|YP_005921114.1| - 0.036 13.6 0.5 0.077 12.5 0.1 1.6 1 1 1 2 2 2 0 Immunity protein 29 MerR-DNA-bind PF09278.6 gi|386002815|ref|YP_005921114.1| - 0.3 11.5 5.6 0.55 10.6 0.7 2.4 2 0 0 2 2 2 0 MerR, DNA binding DUF241 PF03087.9 gi|386002815|ref|YP_005921114.1| - 0.54 9.7 3.9 0.95 8.9 0.4 2.1 1 1 0 2 2 2 0 Arabidopsis protein of unknown function bZIP_1 PF00170.16 gi|386002815|ref|YP_005921114.1| - 1.9 8.5 5.8 1.6 8.7 0.4 2.7 2 1 0 2 2 2 0 bZIP transcription factor DUF4430 PF14478.1 gi|386002816|ref|YP_005921115.1| - 0.087 12.8 0.0 0.34 10.9 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4430) Orn_Arg_deC_N PF02784.11 gi|386002817|ref|YP_005921116.1| - 2.1e-47 161.4 0.0 3e-47 160.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|386002817|ref|YP_005921116.1| - 3.1e-16 59.1 0.0 6.7e-16 58.0 0.0 1.6 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DS PF01916.12 gi|386002818|ref|YP_005921117.1| - 1.7e-68 230.9 0.0 2.1e-68 230.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase AA_kinase PF00696.23 gi|386002818|ref|YP_005921117.1| - 0.093 12.2 0.0 1.2 8.6 0.0 2.3 1 1 1 2 2 2 0 Amino acid kinase family PRTase_1 PF11202.3 gi|386002818|ref|YP_005921117.1| - 0.14 11.0 0.0 0.31 9.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase (PRTase) Methylase_S PF01420.14 gi|386002820|ref|YP_005921119.1| - 4.4e-13 49.5 5.9 8.4e-07 29.1 0.1 2.4 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain LigT_PEase PF02834.11 gi|386002820|ref|YP_005921119.1| - 0.062 13.2 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 LigT like Phosphoesterase N6_Mtase PF02384.11 gi|386002821|ref|YP_005921120.1| - 2e-37 128.9 0.0 4.5e-37 127.8 0.0 1.6 1 0 0 1 1 1 1 N-6 DNA Methylase HSDR_N_2 PF13588.1 gi|386002821|ref|YP_005921120.1| - 7e-20 70.9 0.1 2e-19 69.4 0.0 1.9 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Methyltransf_26 PF13659.1 gi|386002821|ref|YP_005921120.1| - 1.4e-14 54.1 0.0 2.6e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|386002821|ref|YP_005921120.1| - 1.1e-07 31.5 0.0 5.5e-07 29.3 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|386002821|ref|YP_005921120.1| - 0.00015 22.0 0.0 0.00094 19.5 0.0 2.3 1 1 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.1 gi|386002821|ref|YP_005921120.1| - 0.032 13.8 0.0 0.37 10.3 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain DUF2080 PF09853.4 gi|386002822|ref|YP_005921121.1| - 1e-05 25.1 0.0 1.1e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) Antitoxin-MazE PF04014.13 gi|386002822|ref|YP_005921121.1| - 0.015 15.0 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE DDE_Tnp_1 PF01609.16 gi|386002823|ref|YP_005921122.1| - 2.5e-15 56.6 0.1 6.6e-15 55.2 0.1 1.7 1 0 0 1 1 1 1 Transposase DDE domain SWIM PF04434.12 gi|386002823|ref|YP_005921122.1| - 5.4e-06 25.7 0.1 1.1e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger Ribosomal_L27e PF01777.13 gi|386002823|ref|YP_005921122.1| - 0.058 13.5 1.3 0.23 11.6 0.0 2.4 2 0 0 2 2 2 0 Ribosomal L27e protein family DUF2589 PF11655.3 gi|386002824|ref|YP_005921123.1| - 1.5e-37 129.3 0.1 1.9e-37 129.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2589) DUF2777 PF10949.3 gi|386002825|ref|YP_005921124.1| - 0.029 14.0 0.3 0.47 10.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2777) TMEM191C PF15194.1 gi|386002826|ref|YP_005921125.1| - 0.0064 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 TMEM191C family DUF1795 PF08786.6 gi|386002827|ref|YP_005921126.1| - 2.6e-07 30.5 0.0 4.2e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1795) PsbP PF01789.11 gi|386002827|ref|YP_005921126.1| - 0.00028 20.3 0.2 0.018 14.4 0.1 2.2 1 1 0 1 1 1 1 PsbP PI3K_p85B PF02192.11 gi|386002827|ref|YP_005921126.1| - 0.091 12.1 0.0 0.45 9.9 0.0 1.9 2 0 0 2 2 2 0 PI3-kinase family, p85-binding domain Ion_trans_2 PF07885.11 gi|386002828|ref|YP_005921127.1| - 0.041 13.6 1.6 0.089 12.5 1.1 1.6 1 1 0 1 1 1 0 Ion channel Trypsin_2 PF13365.1 gi|386002829|ref|YP_005921128.1| - 1.9e-19 69.7 0.0 4.5e-19 68.5 0.0 1.6 1 1 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|386002829|ref|YP_005921128.1| - 8e-15 55.0 0.0 7.8e-11 41.9 0.0 2.1 2 0 0 2 2 2 2 Trypsin Peptidase_S46 PF10459.4 gi|386002829|ref|YP_005921128.1| - 8e-07 27.8 1.1 0.0053 15.2 0.1 3.0 2 1 0 3 3 3 3 Peptidase S46 TPR_11 PF13414.1 gi|386002829|ref|YP_005921128.1| - 0.0069 16.0 0.1 0.019 14.5 0.0 1.7 2 0 0 2 2 2 1 TPR repeat Cache_1 PF02743.13 gi|386002829|ref|YP_005921128.1| - 0.0076 15.7 0.1 0.026 14.0 0.0 1.9 2 0 0 2 2 2 1 Cache domain TPR_2 PF07719.12 gi|386002829|ref|YP_005921128.1| - 0.013 15.3 0.1 0.05 13.5 0.0 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat Peptidase_S29 PF02907.10 gi|386002829|ref|YP_005921128.1| - 0.017 14.6 0.0 0.042 13.3 0.0 1.5 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease DUF31 PF01732.11 gi|386002829|ref|YP_005921128.1| - 0.029 13.7 0.2 26 3.9 0.0 3.1 2 1 1 3 3 3 0 Putative peptidase (DUF31) Peptidase_S7 PF00949.16 gi|386002829|ref|YP_005921128.1| - 0.15 11.4 0.6 0.35 10.2 0.1 1.8 2 0 0 2 2 2 0 Peptidase S7, Flavivirus NS3 serine protease RNA_bind_2 PF10133.4 gi|386002831|ref|YP_005921130.1| - 2.1e-11 43.6 0.4 2.2e-11 43.5 0.3 1.0 1 0 0 1 1 1 1 Predicted RNA-binding protein Prefoldin_2 PF01920.15 gi|386002832|ref|YP_005921131.1| - 1.8e-24 85.5 16.4 2e-24 85.3 11.4 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF2937 PF11157.3 gi|386002832|ref|YP_005921131.1| - 0.0073 15.6 3.5 0.11 11.8 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2937) HlyD_2 PF12700.2 gi|386002832|ref|YP_005921131.1| - 0.012 14.8 7.7 0.39 9.8 1.0 2.0 1 1 1 2 2 2 0 HlyD family secretion protein DUF3014 PF11219.3 gi|386002832|ref|YP_005921131.1| - 0.018 14.9 0.5 0.024 14.5 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3014) CASP_C PF08172.7 gi|386002832|ref|YP_005921131.1| - 0.11 11.5 2.3 0.12 11.3 1.6 1.1 1 0 0 1 1 1 0 CASP C terminal DUF2968 PF11180.3 gi|386002832|ref|YP_005921131.1| - 0.13 11.6 13.0 0.27 10.6 2.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Prefoldin PF02996.12 gi|386002832|ref|YP_005921131.1| - 0.14 11.8 9.4 1.5 8.4 1.3 2.3 2 0 0 2 2 2 0 Prefoldin subunit BLOC1_2 PF10046.4 gi|386002832|ref|YP_005921131.1| - 0.18 11.9 8.8 0.14 12.2 1.5 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.7 gi|386002832|ref|YP_005921131.1| - 0.19 11.4 3.1 1.2 8.8 0.1 2.0 2 0 0 2 2 2 0 Laminin Domain II DUF4200 PF13863.1 gi|386002832|ref|YP_005921131.1| - 0.27 11.1 13.6 0.054 13.4 3.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) YlqD PF11068.3 gi|386002832|ref|YP_005921131.1| - 0.28 11.1 12.9 0.47 10.4 1.6 2.1 2 0 0 2 2 2 0 YlqD protein Snf7 PF03357.16 gi|386002832|ref|YP_005921131.1| - 0.39 10.0 10.6 2.8 7.3 7.3 1.9 1 1 0 1 1 1 0 Snf7 TBPIP PF07106.8 gi|386002832|ref|YP_005921131.1| - 0.48 9.9 9.6 2.1 7.8 6.5 1.8 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) BCAS2 PF05700.6 gi|386002832|ref|YP_005921131.1| - 0.51 9.7 10.4 0.08 12.3 2.2 2.0 2 0 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) Mnd1 PF03962.10 gi|386002832|ref|YP_005921131.1| - 0.58 9.7 7.1 3.3 7.3 4.7 1.9 1 1 0 1 1 1 0 Mnd1 family CAMP_factor PF07373.6 gi|386002832|ref|YP_005921131.1| - 0.96 8.9 5.2 0.33 10.4 0.6 1.9 1 1 1 2 2 2 0 CAMP factor (Cfa) DUF4618 PF15397.1 gi|386002832|ref|YP_005921131.1| - 0.97 8.7 9.8 1.2 8.3 6.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) Viral_P18 PF04521.8 gi|386002832|ref|YP_005921131.1| - 1.7 8.1 8.6 4.4 6.7 0.5 2.2 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Cortex-I_coil PF09304.5 gi|386002832|ref|YP_005921131.1| - 1.8 8.6 15.9 5.1 7.1 3.4 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil TMF_TATA_bd PF12325.3 gi|386002832|ref|YP_005921131.1| - 1.9 8.2 10.7 0.58 9.9 1.0 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding WXG100 PF06013.7 gi|386002832|ref|YP_005921131.1| - 2.3 8.2 8.2 4.7 7.2 2.1 2.3 2 0 0 2 2 2 0 Proteins of 100 residues with WXG PilO PF04350.8 gi|386002832|ref|YP_005921131.1| - 2.4 8.0 10.4 5.6 6.8 0.7 2.1 2 0 0 2 2 2 0 Pilus assembly protein, PilO FlxA PF14282.1 gi|386002832|ref|YP_005921131.1| - 2.5 8.0 19.6 3.3 7.6 5.4 2.2 2 0 0 2 2 2 0 FlxA-like protein ADIP PF11559.3 gi|386002832|ref|YP_005921131.1| - 5.8 6.7 12.5 4.2 7.2 1.8 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Seryl_tRNA_N PF02403.17 gi|386002832|ref|YP_005921131.1| - 6.9 6.7 12.8 4.4 7.3 2.2 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF972 PF06156.8 gi|386002832|ref|YP_005921131.1| - 8.9 6.7 9.3 1.4e+02 2.8 6.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Spc24 PF08286.6 gi|386002832|ref|YP_005921131.1| - 9 6.0 9.2 7.2 6.3 2.2 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Cep57_MT_bd PF06657.8 gi|386002832|ref|YP_005921131.1| - 9.4 6.2 11.0 1.2 9.1 1.2 2.6 1 1 2 3 3 3 0 Centrosome microtubule-binding domain of Cep57 Cauli_AT PF03233.8 gi|386002832|ref|YP_005921131.1| - 9.6 5.8 6.8 7.2 6.2 0.4 2.1 1 1 1 2 2 2 0 Aphid transmission protein Pcc1 PF09341.5 gi|386002833|ref|YP_005921132.1| - 1.3e-12 47.5 0.6 1.4e-12 47.4 0.4 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 T2SM_b PF10741.4 gi|386002833|ref|YP_005921132.1| - 0.062 12.9 0.2 0.072 12.7 0.1 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b Oxidored_nitro PF00148.14 gi|386002834|ref|YP_005921133.1| - 0.0019 16.9 0.0 0.0023 16.6 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase K_oxygenase PF13434.1 gi|386002834|ref|YP_005921133.1| - 0.0058 15.5 0.0 0.0069 15.3 0.0 1.1 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) DUF4147 PF13660.1 gi|386002834|ref|YP_005921133.1| - 0.053 12.6 0.0 0.067 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) Brix PF04427.13 gi|386002834|ref|YP_005921133.1| - 0.081 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Brix domain DNA_RNApol_7kD PF03604.8 gi|386002835|ref|YP_005921134.1| - 3e-09 36.1 8.0 4e-09 35.7 5.5 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|386002835|ref|YP_005921134.1| - 2.8e-05 23.4 1.0 3.8e-05 23.0 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|386002835|ref|YP_005921134.1| - 0.00012 21.1 0.4 0.1 11.8 0.0 2.0 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|386002835|ref|YP_005921134.1| - 0.00027 20.2 2.0 0.00034 19.8 1.4 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.14 gi|386002835|ref|YP_005921134.1| - 0.0014 18.3 0.5 0.0014 18.3 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF951 PF06107.6 gi|386002835|ref|YP_005921134.1| - 0.0016 17.8 4.1 0.0097 15.4 0.2 2.0 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF951) OrfB_Zn_ribbon PF07282.6 gi|386002835|ref|YP_005921134.1| - 0.0023 17.5 2.6 0.0045 16.6 1.8 1.6 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Cys_rich_CPXG PF14255.1 gi|386002835|ref|YP_005921134.1| - 0.0026 17.5 1.5 0.019 14.8 0.1 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG zinc_ribbon_4 PF13717.1 gi|386002835|ref|YP_005921134.1| - 0.0044 16.6 3.2 0.097 12.3 2.2 2.1 1 1 0 1 1 1 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|386002835|ref|YP_005921134.1| - 0.0076 16.0 4.0 0.22 11.3 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|386002835|ref|YP_005921134.1| - 0.0083 15.9 0.7 0.0086 15.8 0.5 1.1 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_6 PF14599.1 gi|386002835|ref|YP_005921134.1| - 0.0088 15.8 1.5 0.012 15.3 1.0 1.2 1 0 0 1 1 1 1 Zinc-ribbon zinc_ribbon_5 PF13719.1 gi|386002835|ref|YP_005921134.1| - 0.0093 15.5 3.9 0.18 11.3 2.7 2.1 1 1 0 1 1 1 1 zinc-ribbon domain CpXC PF14353.1 gi|386002835|ref|YP_005921134.1| - 0.0096 15.8 2.2 0.75 9.7 0.1 2.0 1 1 1 2 2 2 1 CpXC protein Zn-ribbon_8 PF09723.5 gi|386002835|ref|YP_005921134.1| - 0.011 15.7 6.1 0.021 14.7 4.2 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DUF329 PF03884.9 gi|386002835|ref|YP_005921134.1| - 0.012 15.1 1.8 0.95 9.0 1.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-C2H2_4 PF13894.1 gi|386002835|ref|YP_005921134.1| - 0.016 15.5 1.0 2 8.9 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Prok-RING_1 PF14446.1 gi|386002835|ref|YP_005921134.1| - 0.016 14.9 1.4 0.83 9.4 1.5 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 TFIIS_C PF01096.13 gi|386002835|ref|YP_005921134.1| - 0.02 14.5 2.4 2.9 7.6 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-RING_3 PF14369.1 gi|386002835|ref|YP_005921134.1| - 0.024 14.6 1.4 0.037 14.0 1.0 1.3 1 0 0 1 1 1 0 zinc-finger DZR PF12773.2 gi|386002835|ref|YP_005921134.1| - 0.033 14.0 1.1 0.063 13.1 0.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF2072 PF09845.4 gi|386002835|ref|YP_005921134.1| - 0.038 13.9 0.7 0.041 13.8 0.5 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-ISL3 PF14690.1 gi|386002835|ref|YP_005921134.1| - 0.042 13.8 6.0 0.1 12.6 0.6 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A2L_zn_ribbon PF08792.5 gi|386002835|ref|YP_005921134.1| - 0.06 12.8 2.4 1.6 8.2 2.1 2.0 1 1 1 2 2 2 0 A2L zinc ribbon domain C1_1 PF00130.17 gi|386002835|ref|YP_005921134.1| - 0.063 13.0 1.3 0.13 12.0 0.9 1.5 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Spt4 PF06093.8 gi|386002835|ref|YP_005921134.1| - 0.1 12.5 0.3 0.11 12.3 0.2 1.1 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-Di19 PF05605.7 gi|386002835|ref|YP_005921134.1| - 0.12 12.5 0.5 0.78 9.9 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF1272 PF06906.6 gi|386002835|ref|YP_005921134.1| - 0.12 12.2 0.9 0.15 11.8 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-AN1 PF01428.11 gi|386002835|ref|YP_005921134.1| - 0.12 12.2 1.1 0.26 11.1 0.8 1.5 1 1 1 2 2 2 0 AN1-like Zinc finger zf-TFIIB PF13453.1 gi|386002835|ref|YP_005921134.1| - 0.13 11.4 1.4 0.3 10.3 0.9 1.6 1 1 1 2 2 2 0 Transcription factor zinc-finger IBR PF01485.16 gi|386002835|ref|YP_005921134.1| - 0.14 12.0 1.3 0.17 11.7 0.9 1.2 1 0 0 1 1 1 0 IBR domain zf-C2H2 PF00096.21 gi|386002835|ref|YP_005921134.1| - 0.14 12.5 3.2 6.5 7.3 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-FCS PF06467.9 gi|386002835|ref|YP_005921134.1| - 0.16 11.6 4.0 0.36 10.5 0.1 2.1 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DNA_ligase_ZBD PF03119.11 gi|386002835|ref|YP_005921134.1| - 0.23 11.1 1.3 1 9.1 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3268 PF11672.3 gi|386002835|ref|YP_005921134.1| - 0.3 11.2 1.5 8.4 6.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3268) Lar_restr_allev PF14354.1 gi|386002835|ref|YP_005921134.1| - 0.33 11.2 1.6 1.3 9.4 0.0 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar Cys_rich_KTR PF14205.1 gi|386002835|ref|YP_005921134.1| - 0.4 10.1 4.0 0.5 9.8 0.2 2.0 1 1 1 2 2 2 0 Cysteine-rich KTR DiS_P_DiS PF06750.8 gi|386002835|ref|YP_005921134.1| - 0.44 10.3 2.2 9.3 6.1 1.5 2.0 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain UPF0547 PF10571.4 gi|386002835|ref|YP_005921134.1| - 0.65 9.7 7.0 2.8 7.7 4.9 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Mu-like_Com PF10122.4 gi|386002835|ref|YP_005921134.1| - 0.76 8.8 5.2 2.4 7.2 3.6 1.8 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-HIT PF04438.11 gi|386002835|ref|YP_005921134.1| - 0.83 9.3 5.3 5.7 6.6 0.8 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-FPG_IleRS PF06827.9 gi|386002835|ref|YP_005921134.1| - 1.2 8.8 4.5 9.7 5.9 0.2 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF2296 PF10058.4 gi|386002835|ref|YP_005921134.1| - 1.2 8.9 5.2 32 4.3 3.1 2.2 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-Sec23_Sec24 PF04810.10 gi|386002835|ref|YP_005921134.1| - 1.4 8.5 4.1 14 5.3 2.8 2.0 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger Desulfoferrod_N PF06397.7 gi|386002835|ref|YP_005921134.1| - 2.1 7.7 4.7 2.2 7.7 0.3 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain PyrI_C PF02748.10 gi|386002835|ref|YP_005921134.1| - 2.8 7.4 5.1 0.8 9.1 0.3 2.0 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Ribosomal_L37ae PF01780.14 gi|386002836|ref|YP_005921135.1| - 3.7e-32 110.0 5.9 4.1e-32 109.9 4.1 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.6 gi|386002836|ref|YP_005921135.1| - 4.5e-05 23.0 0.7 6.9e-05 22.4 0.5 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF4379 PF14311.1 gi|386002836|ref|YP_005921135.1| - 0.00029 20.5 1.8 0.22 11.3 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4379) Zn_Tnp_IS1595 PF12760.2 gi|386002836|ref|YP_005921135.1| - 0.002 17.8 1.7 0.0028 17.4 1.2 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|386002836|ref|YP_005921135.1| - 0.0039 16.7 2.2 0.049 13.2 0.3 2.4 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|386002836|ref|YP_005921135.1| - 0.0045 16.9 2.1 1.5 8.7 0.2 2.3 2 0 0 2 2 2 2 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|386002836|ref|YP_005921135.1| - 0.0049 16.5 2.3 0.067 12.8 0.3 2.4 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|386002836|ref|YP_005921135.1| - 0.0074 15.5 1.5 0.013 14.8 1.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Elf1 PF05129.8 gi|386002836|ref|YP_005921135.1| - 0.012 15.2 0.1 0.014 15.0 0.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like TFIIS_C PF01096.13 gi|386002836|ref|YP_005921135.1| - 0.015 14.9 2.5 0.94 9.1 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-H2C2_2 PF13465.1 gi|386002836|ref|YP_005921135.1| - 0.025 14.8 0.6 5.1 7.5 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain RRN7 PF11781.3 gi|386002836|ref|YP_005921135.1| - 0.031 13.7 5.2 0.054 12.9 3.6 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 IBR PF01485.16 gi|386002836|ref|YP_005921135.1| - 0.035 13.9 0.2 0.051 13.4 0.1 1.2 1 0 0 1 1 1 0 IBR domain zf-C2H2_4 PF13894.1 gi|386002836|ref|YP_005921135.1| - 0.036 14.4 1.5 1.9 8.9 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin PF00301.15 gi|386002836|ref|YP_005921135.1| - 0.036 13.9 0.6 7.9 6.4 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin Rep_fac-A_C PF08646.5 gi|386002836|ref|YP_005921135.1| - 0.04 13.6 0.1 0.049 13.3 0.1 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain Prim_Zn_Ribbon PF08273.7 gi|386002836|ref|YP_005921135.1| - 0.048 13.7 8.0 0.15 12.1 5.6 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF1610 PF07754.6 gi|386002836|ref|YP_005921135.1| - 0.05 13.7 3.3 0.39 10.8 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DNA_ligase_ZBD PF03119.11 gi|386002836|ref|YP_005921135.1| - 0.053 13.2 1.5 0.11 12.1 1.0 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Desulfoferrod_N PF06397.7 gi|386002836|ref|YP_005921135.1| - 0.063 12.6 2.9 1.3 8.5 0.1 2.3 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Lar_restr_allev PF14354.1 gi|386002836|ref|YP_005921135.1| - 0.11 12.8 0.8 0.23 11.8 0.6 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF2296 PF10058.4 gi|386002836|ref|YP_005921135.1| - 0.11 12.2 0.5 11 5.8 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-like PF04071.7 gi|386002836|ref|YP_005921135.1| - 0.12 12.0 0.1 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Cysteine-rich small domain zinc_ribbon_2 PF13240.1 gi|386002836|ref|YP_005921135.1| - 0.14 11.6 2.7 5.5 6.6 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|386002836|ref|YP_005921135.1| - 0.16 12.3 2.8 9.3 6.8 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-UBP PF02148.14 gi|386002836|ref|YP_005921135.1| - 0.16 12.0 0.5 0.25 11.4 0.4 1.4 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein zf-ribbon_3 PF13248.1 gi|386002836|ref|YP_005921135.1| - 0.17 11.1 1.0 15 4.9 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_2 PF13923.1 gi|386002836|ref|YP_005921135.1| - 0.2 11.7 2.3 0.92 9.5 1.8 1.8 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) CpXC PF14353.1 gi|386002836|ref|YP_005921135.1| - 0.21 11.5 1.0 6.7 6.6 0.0 2.1 1 1 2 3 3 3 0 CpXC protein UPF0547 PF10571.4 gi|386002836|ref|YP_005921135.1| - 0.21 11.2 4.4 1 9.1 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_5 PF14634.1 gi|386002836|ref|YP_005921135.1| - 0.41 10.3 3.8 5.6 6.7 3.0 2.0 1 1 1 2 2 2 0 zinc-RING finger domain Mut7-C PF01927.11 gi|386002836|ref|YP_005921135.1| - 0.85 9.5 3.3 12 5.8 2.3 2.1 1 1 0 1 1 1 0 Mut7-C RNAse domain Sgf11 PF08209.6 gi|386002836|ref|YP_005921135.1| - 0.88 8.9 3.1 2.8 7.3 0.2 2.6 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-ISL3 PF14690.1 gi|386002836|ref|YP_005921135.1| - 9.3 6.3 11.3 1.4 8.9 0.2 2.8 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNase_PH PF01138.16 gi|386002837|ref|YP_005921136.1| - 1.3e-27 96.6 0.0 2.7e-27 95.6 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|386002837|ref|YP_005921136.1| - 1.2e-07 31.5 0.1 2e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|386002838|ref|YP_005921137.1| - 3.2e-34 118.0 0.0 5.4e-34 117.3 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|386002838|ref|YP_005921137.1| - 1.2e-15 57.1 0.0 2e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 EF-hand_5 PF13202.1 gi|386002838|ref|YP_005921137.1| - 0.057 12.7 0.0 0.13 11.6 0.0 1.7 1 0 0 1 1 1 0 EF hand KH_1 PF00013.24 gi|386002839|ref|YP_005921138.1| - 3.1e-09 36.3 0.0 6.4e-09 35.3 0.0 1.5 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|386002839|ref|YP_005921138.1| - 3.7e-08 33.3 0.0 7.7e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 S1 RNA binding domain ECR1_N PF14382.1 gi|386002839|ref|YP_005921138.1| - 3.4e-07 29.4 0.4 7e-07 28.4 0.1 1.8 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region KH_3 PF13014.1 gi|386002839|ref|YP_005921138.1| - 5.9e-05 22.6 0.0 0.00013 21.4 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|386002839|ref|YP_005921138.1| - 8.6e-05 22.0 0.0 0.00017 21.0 0.0 1.6 1 0 0 1 1 1 1 KH domain SBDS PF01172.13 gi|386002840|ref|YP_005921139.1| - 9.5e-26 89.4 0.1 1.6e-25 88.7 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|386002840|ref|YP_005921139.1| - 4e-23 81.4 0.0 6.2e-23 80.8 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.21 gi|386002841|ref|YP_005921140.1| - 3.1e-58 196.2 0.3 3.9e-58 195.8 0.2 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|386002841|ref|YP_005921140.1| - 3.5e-15 54.9 0.4 1.2e-14 53.2 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.14 gi|386002842|ref|YP_005921141.1| - 2.4e-16 59.5 0.0 3.3e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.11 gi|386002843|ref|YP_005921142.1| - 2.3e-30 104.8 0.0 3.1e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|386002843|ref|YP_005921142.1| - 1.7e-06 27.9 0.0 1.7e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 PHP domain RNA_binding PF01877.12 gi|386002844|ref|YP_005921143.1| - 2.4e-33 114.6 0.2 2.7e-33 114.5 0.1 1.0 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.12 gi|386002845|ref|YP_005921144.1| - 1.2e-83 279.3 7.0 1.4e-83 279.0 4.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 DUF2114 PF09887.4 gi|386002847|ref|YP_005921146.1| - 1.4e-217 722.3 0.2 1.6e-217 722.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) FAD_binding_3 PF01494.14 gi|386002848|ref|YP_005921147.1| - 7.5e-17 61.4 0.2 3.1e-06 26.4 0.0 3.1 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|386002848|ref|YP_005921147.1| - 7.3e-14 51.4 0.0 1.4e-08 34.1 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.19 gi|386002848|ref|YP_005921147.1| - 2.1e-13 49.9 1.3 5.6e-06 25.4 0.0 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|386002848|ref|YP_005921147.1| - 9.8e-07 28.7 0.0 3e-06 27.1 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|386002848|ref|YP_005921147.1| - 2.1e-06 27.7 0.0 4.4e-06 26.7 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|386002848|ref|YP_005921147.1| - 9.1e-06 24.3 0.2 0.00041 18.9 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|386002848|ref|YP_005921147.1| - 1.3e-05 24.3 0.2 2e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|386002848|ref|YP_005921147.1| - 2.3e-05 23.4 0.0 0.00066 18.6 0.1 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|386002848|ref|YP_005921147.1| - 8.1e-05 21.4 0.1 0.082 11.5 0.0 3.0 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|386002848|ref|YP_005921147.1| - 0.00013 22.0 0.0 0.0011 19.0 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|386002848|ref|YP_005921147.1| - 0.00015 22.0 0.1 0.0034 17.7 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|386002848|ref|YP_005921147.1| - 0.00072 18.7 0.1 0.0013 17.8 0.1 1.4 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|386002848|ref|YP_005921147.1| - 0.0019 17.3 0.3 0.0028 16.7 0.2 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase TrkA_N PF02254.13 gi|386002848|ref|YP_005921147.1| - 0.012 15.6 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|386002848|ref|YP_005921147.1| - 0.032 13.9 0.0 0.049 13.3 0.0 1.2 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|386002848|ref|YP_005921147.1| - 0.039 13.6 0.1 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|386002848|ref|YP_005921147.1| - 0.048 13.2 0.1 0.095 12.2 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.11 gi|386002848|ref|YP_005921147.1| - 0.056 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|386002848|ref|YP_005921147.1| - 0.061 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VWA_2 PF13519.1 gi|386002849|ref|YP_005921148.1| - 1.6e-28 99.9 0.6 2.4e-28 99.3 0.4 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|386002849|ref|YP_005921148.1| - 3.5e-16 59.4 0.0 5.5e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|386002849|ref|YP_005921148.1| - 6.8e-10 38.8 0.0 1.2e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain MCH PF02289.11 gi|386002850|ref|YP_005921149.1| - 6.4e-121 403.2 0.1 7.2e-121 403.0 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) URO-D PF01208.12 gi|386002850|ref|YP_005921149.1| - 0.12 11.2 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) Usp PF00582.21 gi|386002853|ref|YP_005921152.1| - 2.5e-35 121.7 3.9 2.8e-35 121.5 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|386002853|ref|YP_005921152.1| - 0.0033 16.7 0.7 0.39 9.9 0.1 2.4 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel Peripla_BP_6 PF13458.1 gi|386002853|ref|YP_005921152.1| - 0.0095 15.3 0.7 0.039 13.3 0.0 1.8 2 0 0 2 2 2 1 Periplasmic binding protein E3_binding PF02817.12 gi|386002853|ref|YP_005921152.1| - 0.049 13.2 1.3 52 3.5 0.2 3.3 3 0 0 3 3 3 0 e3 binding domain ParA PF10609.4 gi|386002853|ref|YP_005921152.1| - 0.08 12.8 0.1 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 ParA/MinD ATPase like DUF3197 PF11432.3 gi|386002853|ref|YP_005921152.1| - 0.11 12.5 0.2 0.16 11.9 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3197) Ribul_P_3_epim PF00834.14 gi|386002853|ref|YP_005921152.1| - 0.11 11.5 0.3 0.51 9.4 0.1 1.9 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family IF3_N PF05198.11 gi|386002853|ref|YP_005921152.1| - 0.34 10.8 4.1 1.7 8.5 0.3 2.8 1 1 1 2 2 2 0 Translation initiation factor IF-3, N-terminal domain DUF1930 PF09122.5 gi|386002854|ref|YP_005921153.1| - 0.095 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1930) DUF2281 PF10047.4 gi|386002856|ref|YP_005921155.1| - 0.00019 21.6 0.2 0.00019 21.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2281) PemK PF02452.12 gi|386002857|ref|YP_005921156.1| - 5e-08 33.1 0.0 5.3e-08 33.0 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein DUF2635 PF10948.3 gi|386002858|ref|YP_005921157.1| - 0.037 13.3 0.1 0.16 11.2 0.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2635) TaqI_C PF12950.2 gi|386002859|ref|YP_005921158.1| - 1.8e-20 72.8 0.3 5.3e-20 71.3 0.2 1.9 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Eco57I PF07669.6 gi|386002859|ref|YP_005921158.1| - 7.1e-17 61.6 0.0 1.8e-16 60.3 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_26 PF13659.1 gi|386002859|ref|YP_005921158.1| - 9.7e-16 57.8 0.0 4e-15 55.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|386002859|ref|YP_005921158.1| - 4.6e-10 39.0 0.0 1.9e-07 30.4 0.0 2.6 2 1 0 2 2 2 2 N-6 DNA Methylase HSDR_N PF04313.9 gi|386002859|ref|YP_005921158.1| - 2.8e-07 30.4 0.0 0.00012 21.8 0.0 2.5 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.13 gi|386002859|ref|YP_005921158.1| - 0.0011 18.5 0.1 0.13 11.8 0.0 2.9 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Adenylsucc_synt PF00709.16 gi|386002860|ref|YP_005921159.1| - 3.9e-156 519.9 0.0 4.4e-156 519.7 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase RimK PF08443.6 gi|386002861|ref|YP_005921160.1| - 3.4e-33 114.7 0.0 4.4e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|386002861|ref|YP_005921160.1| - 1.2e-13 50.5 0.0 1.9e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|386002861|ref|YP_005921160.1| - 8.9e-12 45.1 0.0 1.2e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|386002861|ref|YP_005921160.1| - 1.6e-09 36.9 0.0 4.3e-09 35.5 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|386002861|ref|YP_005921160.1| - 1.9e-06 27.8 0.0 0.072 12.9 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_YheCD PF14398.1 gi|386002861|ref|YP_005921160.1| - 0.00023 20.0 0.0 0.11 11.3 0.0 2.3 1 1 1 2 2 2 2 YheC/D like ATP-grasp DUF2249 PF10006.4 gi|386002861|ref|YP_005921160.1| - 0.0093 15.5 0.1 0.024 14.1 0.0 1.7 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Rhodanese PF00581.15 gi|386002862|ref|YP_005921161.1| - 3.9e-16 59.3 0.0 4.4e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain DUF3922 PF13059.1 gi|386002863|ref|YP_005921162.1| - 6.8 6.9 6.7 0.33 11.1 0.8 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3992) AIRS PF00586.19 gi|386002864|ref|YP_005921163.1| - 3.3e-19 68.9 0.1 6.2e-19 68.0 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|386002864|ref|YP_005921163.1| - 5.2e-08 33.0 0.4 8.5e-08 32.3 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Radical_SAM PF04055.16 gi|386002865|ref|YP_005921164.1| - 5.1e-26 91.8 0.0 8.5e-26 91.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|386002865|ref|YP_005921164.1| - 7.8e-20 70.8 0.0 1.4e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|386002865|ref|YP_005921164.1| - 5.2e-08 32.9 0.0 8.8e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|386002865|ref|YP_005921164.1| - 1.5e-06 28.3 0.0 2.4e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain SSF PF00474.12 gi|386002866|ref|YP_005921165.1| - 3.5e-33 114.8 28.4 4.3e-31 107.9 19.7 2.3 1 1 0 1 1 1 1 Sodium:solute symporter family DUF372 PF04036.7 gi|386002867|ref|YP_005921166.1| - 6.7e-22 76.6 0.9 9.3e-22 76.2 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|386002867|ref|YP_005921166.1| - 2.7e-20 72.1 0.0 3.8e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) CDP-OH_P_transf PF01066.16 gi|386002868|ref|YP_005921167.1| - 9.2e-09 35.5 7.2 9.2e-09 35.5 5.0 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PS_Dcarbxylase PF02666.10 gi|386002869|ref|YP_005921168.1| - 1.2e-29 103.0 0.5 2.8e-26 92.0 0.1 2.0 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase Peptidase_M23 PF01551.17 gi|386002869|ref|YP_005921168.1| - 0.00051 20.0 0.0 1.9 8.5 0.0 3.1 1 1 2 3 3 3 2 Peptidase family M23 Biotin_lipoyl_2 PF13533.1 gi|386002869|ref|YP_005921168.1| - 0.0032 17.0 0.4 14 5.4 0.0 3.6 3 0 0 3 3 3 1 Biotin-lipoyl like Apocytochr_F_C PF01333.14 gi|386002869|ref|YP_005921168.1| - 0.028 14.2 0.0 0.34 10.7 0.0 2.1 1 1 0 1 1 1 0 Apocytochrome F, C-terminal Biotin_lipoyl PF00364.17 gi|386002869|ref|YP_005921168.1| - 0.03 13.9 0.2 2.6 7.7 0.0 3.0 3 1 1 4 4 4 0 Biotin-requiring enzyme PTS_EIIA_1 PF00358.15 gi|386002869|ref|YP_005921168.1| - 0.12 11.9 0.1 12 5.5 0.0 2.7 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Exosortase_EpsH PF09721.5 gi|386002870|ref|YP_005921169.1| - 8.2e-43 146.5 32.5 1e-42 146.1 22.6 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Peptidase_S8 PF00082.17 gi|386002871|ref|YP_005921170.1| - 8.5e-63 212.1 0.8 1.4e-62 211.4 0.5 1.4 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.11 gi|386002871|ref|YP_005921170.1| - 6.6e-05 23.4 0.0 0.00012 22.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase inhibitor I9 Y1_Tnp PF01797.11 gi|386002873|ref|YP_005921172.1| - 4.3e-23 81.4 0.0 4.6e-23 81.3 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.14 gi|386002874|ref|YP_005921173.1| - 2.7e-43 147.9 0.0 4.2e-43 147.3 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|386002874|ref|YP_005921173.1| - 2.6e-25 87.8 0.1 1.1e-24 85.8 0.1 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|386002874|ref|YP_005921173.1| - 6.8e-17 60.5 1.1 1.4e-16 59.5 0.7 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-NADH-PPase PF09297.6 gi|386002874|ref|YP_005921173.1| - 0.00047 19.6 0.6 0.00082 18.8 0.4 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|386002874|ref|YP_005921173.1| - 0.038 13.8 0.2 0.069 12.9 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|386002874|ref|YP_005921173.1| - 0.073 12.4 0.1 8.6 5.7 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|386002874|ref|YP_005921173.1| - 0.21 11.5 0.9 0.47 10.4 0.6 1.6 1 0 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.4 gi|386002874|ref|YP_005921173.1| - 0.68 9.6 4.2 1.8 8.3 3.0 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 SDF PF00375.13 gi|386002875|ref|YP_005921174.1| - 1.8e-119 399.0 40.6 2e-119 398.8 28.1 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Phosphorylase PF00343.15 gi|386002876|ref|YP_005921175.1| - 4.8e-21 74.3 0.0 7.1e-14 50.6 0.0 3.3 3 1 0 3 3 3 3 Carbohydrate phosphorylase PfkB PF00294.19 gi|386002877|ref|YP_005921176.1| - 3.4e-43 147.8 0.0 4.2e-43 147.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|386002877|ref|YP_005921176.1| - 1.7e-07 30.7 0.0 2.4e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Peptidase_S55 PF05580.7 gi|386002878|ref|YP_005921177.1| - 0.11 11.9 0.0 0.12 11.8 0.0 1.0 1 0 0 1 1 1 0 SpoIVB peptidase S55 OrfB_Zn_ribbon PF07282.6 gi|386002879|ref|YP_005921178.1| - 3.1e-21 74.8 1.1 5.1e-21 74.1 0.1 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|386002879|ref|YP_005921178.1| - 6.2e-13 48.6 0.0 9.3e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|386002879|ref|YP_005921178.1| - 0.0095 15.2 0.2 0.024 13.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Plasmid_stabil PF05016.9 gi|386002880|ref|YP_005921179.1| - 6.4e-07 29.6 0.3 7.9e-07 29.3 0.2 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Cdd1 PF11731.3 gi|386002882|ref|YP_005921181.1| - 0.061 13.2 0.0 0.31 10.9 0.0 2.1 2 0 0 2 2 2 0 Pathogenicity locus HTH_27 PF13463.1 gi|386002882|ref|YP_005921181.1| - 0.081 13.2 0.0 0.2 11.9 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain DDE_Tnp_1 PF01609.16 gi|386002883|ref|YP_005921182.1| - 2.9e-08 33.5 0.2 3.9e-08 33.1 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|386002883|ref|YP_005921182.1| - 0.0017 18.4 0.0 0.0029 17.7 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain PemK PF02452.12 gi|386002884|ref|YP_005921183.1| - 7.1e-08 32.6 0.0 8.4e-08 32.3 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein N6_Mtase PF02384.11 gi|386002885|ref|YP_005921184.1| - 3.1e-34 118.4 0.1 8.4e-34 117.0 0.0 1.7 2 0 0 2 2 2 1 N-6 DNA Methylase HSDR_N_2 PF13588.1 gi|386002885|ref|YP_005921184.1| - 5.6e-17 61.5 0.0 1e-16 60.6 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Methyltransf_26 PF13659.1 gi|386002885|ref|YP_005921184.1| - 2e-14 53.5 0.0 4.8e-14 52.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|386002885|ref|YP_005921184.1| - 6.5e-07 29.0 0.0 5.8e-06 25.9 0.0 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|386002885|ref|YP_005921184.1| - 0.00062 19.3 0.0 0.0018 17.7 0.0 1.7 1 1 0 1 1 1 1 DNA methylase HSDR_N PF04313.9 gi|386002885|ref|YP_005921184.1| - 0.011 15.4 0.2 0.032 13.9 0.0 1.9 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) BCDHK_Adom3 PF10436.4 gi|386002885|ref|YP_005921184.1| - 0.07 12.6 0.0 0.78 9.2 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase DUF1703 PF08011.6 gi|386002885|ref|YP_005921184.1| - 0.089 12.5 0.0 0.3 10.8 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1703) Methylase_S PF01420.14 gi|386002886|ref|YP_005921185.1| - 2.7e-13 50.2 0.0 1.7e-07 31.4 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DUF2145 PF09916.4 gi|386002886|ref|YP_005921185.1| - 0.074 12.5 0.3 20 4.6 0.0 3.2 3 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2145) DUF919 PF06034.6 gi|386002887|ref|YP_005921186.1| - 0.24 11.0 4.0 0.94 9.1 2.5 2.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) UPF0150 PF03681.10 gi|386002889|ref|YP_005921188.1| - 4.9e-10 38.8 0.1 6e-10 38.6 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Dehalogenase PF13486.1 gi|386002889|ref|YP_005921188.1| - 0.14 11.6 0.0 0.15 11.4 0.0 1.0 1 0 0 1 1 1 0 Reductive dehalogenase subunit FTR_C PF02741.10 gi|386002890|ref|YP_005921189.1| - 7.5e-65 217.2 1.0 1e-64 216.8 0.2 1.5 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.13 gi|386002890|ref|YP_005921189.1| - 1.6e-62 209.4 0.6 2.8e-62 208.6 0.1 1.6 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase IMP_cyclohyd PF07826.6 gi|386002891|ref|YP_005921190.1| - 2.7e-55 186.8 0.0 3.2e-55 186.6 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein TPP_enzyme_C PF02775.16 gi|386002892|ref|YP_005921191.1| - 2.6e-24 85.5 0.0 3.4e-24 85.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|386002893|ref|YP_005921192.1| - 5.5e-68 228.9 0.0 7.1e-68 228.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|386002893|ref|YP_005921192.1| - 3.8e-11 42.9 0.1 7.7e-11 42.0 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|386002894|ref|YP_005921193.1| - 1.5e-11 43.3 15.0 2.4e-06 26.8 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|386002894|ref|YP_005921193.1| - 1.9e-08 34.0 14.4 5.3e-08 32.6 10.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386002894|ref|YP_005921193.1| - 2.4e-07 30.4 24.0 7.5e-06 25.6 10.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002894|ref|YP_005921193.1| - 2.4e-07 30.3 18.1 0.00028 20.6 4.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386002894|ref|YP_005921193.1| - 5.8e-07 29.7 14.0 1.3e-06 28.6 9.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386002894|ref|YP_005921193.1| - 2.5e-06 27.0 15.5 0.00018 21.2 1.7 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|386002894|ref|YP_005921193.1| - 3.5e-05 23.9 15.5 7.2e-05 22.9 10.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386002894|ref|YP_005921193.1| - 6.9e-05 23.1 8.4 0.027 14.7 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386002894|ref|YP_005921193.1| - 0.00011 22.8 14.9 0.002 18.8 1.4 2.4 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|386002894|ref|YP_005921193.1| - 0.034 14.6 14.3 0.15 12.6 0.8 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|386002894|ref|YP_005921193.1| - 0.035 14.1 16.0 0.4 10.7 1.9 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|386002894|ref|YP_005921193.1| - 0.041 14.2 11.9 0.28 11.5 2.0 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|386002894|ref|YP_005921193.1| - 0.045 14.0 20.8 0.29 11.5 4.4 2.8 3 1 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|386002894|ref|YP_005921193.1| - 0.26 11.9 20.5 1.4 9.6 4.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|386002894|ref|YP_005921193.1| - 0.31 11.4 14.5 0.78 10.2 2.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain LIM PF00412.17 gi|386002894|ref|YP_005921193.1| - 1.9 8.6 10.9 1.2 9.2 4.8 2.0 1 1 1 2 2 2 0 LIM domain c-SKI_SMAD_bind PF08782.5 gi|386002894|ref|YP_005921193.1| - 9.7 6.3 9.2 4.3 7.5 1.4 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain POR PF01558.13 gi|386002895|ref|YP_005921194.1| - 2.9e-39 134.7 0.2 3.6e-39 134.4 0.2 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase T2SE PF00437.15 gi|386002897|ref|YP_005921196.1| - 5.5e-15 54.9 0.0 9.1e-15 54.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|386002897|ref|YP_005921196.1| - 2e-08 33.7 0.4 5.4e-08 32.3 0.3 1.8 1 0 0 1 1 1 1 KH domain AAA_17 PF13207.1 gi|386002897|ref|YP_005921196.1| - 5.9e-05 23.8 0.0 0.00017 22.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|386002897|ref|YP_005921196.1| - 6.2e-05 22.8 0.0 0.0012 18.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain KH_3 PF13014.1 gi|386002897|ref|YP_005921196.1| - 9.1e-05 22.0 0.1 0.00028 20.4 0.1 1.9 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|386002897|ref|YP_005921196.1| - 0.00044 19.7 0.9 0.0018 17.7 0.3 2.3 2 0 0 2 2 1 1 KH domain AAA_19 PF13245.1 gi|386002897|ref|YP_005921196.1| - 0.00051 19.7 0.0 0.0014 18.3 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain PIN_4 PF13638.1 gi|386002897|ref|YP_005921196.1| - 0.0015 18.6 0.0 0.0074 16.3 0.0 2.0 2 0 0 2 2 2 1 PIN domain AAA_16 PF13191.1 gi|386002897|ref|YP_005921196.1| - 0.0045 16.9 0.0 0.015 15.3 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|386002897|ref|YP_005921196.1| - 0.0056 16.9 0.0 0.016 15.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|386002897|ref|YP_005921196.1| - 0.0096 15.4 0.0 0.026 14.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain TIP49 PF06068.8 gi|386002897|ref|YP_005921196.1| - 0.013 14.2 0.0 0.028 13.1 0.0 1.5 1 0 0 1 1 1 0 TIP49 C-terminus AAA_14 PF13173.1 gi|386002897|ref|YP_005921196.1| - 0.018 14.9 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|386002897|ref|YP_005921196.1| - 0.019 15.1 0.0 0.051 13.7 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|386002897|ref|YP_005921196.1| - 0.019 14.6 0.0 0.089 12.5 0.0 2.1 2 0 0 2 2 2 0 NTPase KH_4 PF13083.1 gi|386002897|ref|YP_005921196.1| - 0.026 14.1 0.1 0.1 12.2 0.0 2.1 1 0 0 1 1 1 0 KH domain AAA_25 PF13481.1 gi|386002897|ref|YP_005921196.1| - 0.027 13.8 0.0 0.09 12.1 0.0 1.9 2 0 0 2 2 1 0 AAA domain KTI12 PF08433.5 gi|386002897|ref|YP_005921196.1| - 0.033 13.3 0.0 0.059 12.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATP_bind_1 PF03029.12 gi|386002897|ref|YP_005921196.1| - 0.034 13.6 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|386002897|ref|YP_005921196.1| - 0.042 13.9 0.0 0.14 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|386002897|ref|YP_005921196.1| - 0.045 12.8 0.0 0.093 11.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin KH_5 PF13184.1 gi|386002897|ref|YP_005921196.1| - 0.047 13.5 0.6 0.16 11.7 0.1 2.2 2 0 0 2 2 1 0 NusA-like KH domain MobB PF03205.9 gi|386002897|ref|YP_005921196.1| - 0.056 13.1 0.0 0.23 11.1 0.0 2.1 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|386002897|ref|YP_005921196.1| - 0.059 12.7 0.0 0.099 12.0 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|386002897|ref|YP_005921196.1| - 0.063 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|386002897|ref|YP_005921196.1| - 0.065 12.7 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|386002897|ref|YP_005921196.1| - 0.083 13.0 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|386002897|ref|YP_005921196.1| - 0.093 12.4 0.0 0.39 10.4 0.0 2.2 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|386002897|ref|YP_005921196.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Cupin_2 PF07883.6 gi|386002898|ref|YP_005921197.1| - 6.7e-09 35.1 0.0 9.5e-09 34.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|386002898|ref|YP_005921197.1| - 5.8e-06 26.0 0.0 7.4e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.2 gi|386002898|ref|YP_005921197.1| - 0.00042 19.9 0.0 0.00052 19.6 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|386002898|ref|YP_005921197.1| - 0.00085 18.6 0.0 0.0013 18.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.7 gi|386002898|ref|YP_005921197.1| - 0.0028 17.2 0.0 0.0037 16.8 0.0 1.4 1 1 0 1 1 1 1 Ethanolamine utilisation protein EutQ AraC_binding_2 PF14525.1 gi|386002898|ref|YP_005921197.1| - 0.011 15.2 0.0 0.013 15.0 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain CENP-C_C PF11699.3 gi|386002898|ref|YP_005921197.1| - 0.037 14.0 0.0 0.048 13.6 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like HTH_5 PF01022.15 gi|386002899|ref|YP_005921198.1| - 2.8e-05 23.6 0.2 5.3e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|386002899|ref|YP_005921198.1| - 0.00016 21.4 0.3 0.00035 20.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|386002899|ref|YP_005921198.1| - 0.00024 21.0 0.3 0.00067 19.6 0.1 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|386002899|ref|YP_005921198.1| - 0.097 12.4 0.1 0.22 11.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix MTH865 PF07747.6 gi|386002900|ref|YP_005921199.1| - 3.5e-29 100.2 0.4 3.9e-29 100.1 0.3 1.0 1 0 0 1 1 1 1 MTH865-like family PHP_C PF13263.1 gi|386002900|ref|YP_005921199.1| - 0.12 11.8 0.1 2.6 7.6 0.0 2.1 2 0 0 2 2 2 0 PHP-associated OrfB_IS605 PF01385.14 gi|386002901|ref|YP_005921200.1| - 2.8e-41 141.3 0.2 6.1e-41 140.2 0.0 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|386002901|ref|YP_005921200.1| - 6.4e-24 83.4 0.1 1.4e-23 82.3 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|386002901|ref|YP_005921200.1| - 3.1e-17 61.6 3.8 6.4e-17 60.6 2.6 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|386002901|ref|YP_005921200.1| - 0.0015 17.7 0.2 0.27 10.5 0.0 2.3 1 1 1 2 2 2 2 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|386002901|ref|YP_005921200.1| - 0.003 17.0 0.3 0.0049 16.3 0.2 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|386002901|ref|YP_005921200.1| - 0.0054 16.5 0.4 0.0093 15.7 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.10 gi|386002901|ref|YP_005921200.1| - 0.0075 15.6 1.5 0.065 12.6 0.1 2.8 3 0 0 3 3 3 1 RecR protein zinc_ribbon_2 PF13240.1 gi|386002901|ref|YP_005921200.1| - 0.068 12.6 0.6 5 6.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HTH_23 PF13384.1 gi|386002902|ref|YP_005921201.1| - 0.00014 21.3 0.1 0.00046 19.7 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_3 PF01381.17 gi|386002902|ref|YP_005921201.1| - 0.0002 21.1 0.0 0.00037 20.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.1 gi|386002902|ref|YP_005921201.1| - 0.00056 19.2 0.1 0.0013 18.0 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.1 gi|386002902|ref|YP_005921201.1| - 0.0018 18.0 0.0 0.0027 17.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|386002902|ref|YP_005921201.1| - 0.0072 16.5 0.1 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|386002902|ref|YP_005921201.1| - 0.0087 15.7 0.0 0.02 14.5 0.0 1.7 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.7 gi|386002902|ref|YP_005921201.1| - 0.016 14.6 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 RepB PF07506.6 gi|386002902|ref|YP_005921201.1| - 0.02 14.7 0.0 0.035 13.9 0.0 1.3 1 1 0 1 1 1 0 RepB plasmid partitioning protein HTH_19 PF12844.2 gi|386002902|ref|YP_005921201.1| - 0.021 14.8 0.0 0.031 14.3 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|386002902|ref|YP_005921201.1| - 0.023 14.3 0.1 0.27 10.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_1 PF00126.22 gi|386002902|ref|YP_005921201.1| - 0.026 14.2 0.2 0.53 10.0 0.0 2.5 2 1 1 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.1 gi|386002902|ref|YP_005921201.1| - 0.027 14.6 0.1 0.23 11.6 0.0 2.0 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_28 PF13518.1 gi|386002902|ref|YP_005921201.1| - 0.037 14.0 0.1 0.093 12.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|386002902|ref|YP_005921201.1| - 0.047 13.6 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Asn_synthase PF00733.16 gi|386002903|ref|YP_005921202.1| - 1.5e-08 34.4 0.0 2.5e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|386002903|ref|YP_005921202.1| - 0.00036 19.5 0.0 0.0016 17.4 0.0 1.9 2 0 0 2 2 2 1 NAD synthase QueC PF06508.8 gi|386002903|ref|YP_005921202.1| - 0.00036 19.8 0.0 0.0055 16.0 0.0 2.5 3 0 0 3 3 3 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|386002903|ref|YP_005921202.1| - 0.011 14.3 0.0 0.54 8.7 0.0 2.1 2 0 0 2 2 2 0 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|386002903|ref|YP_005921202.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 PP-loop family DUF63 PF01889.12 gi|386002904|ref|YP_005921203.1| - 1.5e-83 281.0 5.3 1.7e-83 280.8 3.7 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF1634 PF07843.6 gi|386002904|ref|YP_005921203.1| - 2.9 7.5 9.8 5.6 6.6 3.1 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1634) Proteasome PF00227.21 gi|386002905|ref|YP_005921204.1| - 1e-41 142.3 0.0 1.4e-41 141.8 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.3 gi|386002906|ref|YP_005921205.1| - 1.2e-33 115.7 0.0 2.4e-33 114.7 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|386002906|ref|YP_005921205.1| - 3.8e-24 85.4 0.1 6.6e-24 84.6 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|386002906|ref|YP_005921205.1| - 4.2e-12 45.6 0.0 1.2e-11 44.1 0.0 1.9 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|386002906|ref|YP_005921205.1| - 1.4e-07 31.2 0.0 2.7e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|386002906|ref|YP_005921205.1| - 1.5e-05 24.4 0.1 0.00037 20.0 0.0 3.1 3 0 0 3 3 3 1 KH domain Lactamase_B_3 PF13483.1 gi|386002906|ref|YP_005921205.1| - 5.8e-05 22.8 0.0 0.00015 21.4 0.0 1.8 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|386002906|ref|YP_005921205.1| - 0.0013 18.3 0.0 0.0037 16.8 0.0 1.8 1 0 0 1 1 1 1 KH domain KH_4 PF13083.1 gi|386002906|ref|YP_005921205.1| - 0.0045 16.5 0.1 0.013 15.1 0.1 1.7 1 0 0 1 1 1 1 KH domain ArsR PF09824.4 gi|386002907|ref|YP_005921206.1| - 7.3e-65 217.1 0.0 8.3e-65 216.9 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_20 PF12840.2 gi|386002907|ref|YP_005921206.1| - 0.0088 15.8 0.1 0.033 13.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|386002907|ref|YP_005921206.1| - 0.026 14.2 0.2 5.2 6.8 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|386002907|ref|YP_005921206.1| - 0.028 14.0 0.1 8 6.2 0.1 2.4 2 0 0 2 2 2 0 MarR family HTH_AsnC-type PF13404.1 gi|386002907|ref|YP_005921206.1| - 0.059 12.9 0.2 0.18 11.3 0.1 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|386002908|ref|YP_005921207.1| - 1.8e-10 40.2 0.0 4.3e-10 39.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|386002908|ref|YP_005921207.1| - 2.5e-08 33.1 0.0 6.2e-08 31.9 0.0 1.7 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|386002908|ref|YP_005921207.1| - 6.5e-08 32.7 0.0 1.2e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|386002908|ref|YP_005921207.1| - 1.2e-05 24.8 0.0 3e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|386002908|ref|YP_005921207.1| - 3.7e-05 23.3 0.0 7.9e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.17 gi|386002908|ref|YP_005921207.1| - 4.9e-05 23.0 0.0 0.00028 20.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.1 gi|386002908|ref|YP_005921207.1| - 0.00012 21.8 0.1 0.0022 17.7 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_17 PF12728.2 gi|386002908|ref|YP_005921207.1| - 0.00035 20.7 0.0 0.00093 19.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|386002908|ref|YP_005921207.1| - 0.00036 20.2 0.0 0.00056 19.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Fe_dep_repress PF01325.14 gi|386002908|ref|YP_005921207.1| - 0.001 18.9 0.0 0.0024 17.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|386002908|ref|YP_005921207.1| - 0.0017 17.9 0.0 0.0044 16.6 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.15 gi|386002908|ref|YP_005921207.1| - 0.0023 18.0 0.0 0.0056 16.7 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.16 gi|386002908|ref|YP_005921207.1| - 0.0039 16.6 0.2 0.037 13.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Tnp_1 PF01527.15 gi|386002908|ref|YP_005921207.1| - 0.0063 16.4 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 Transposase EAP30 PF04157.11 gi|386002908|ref|YP_005921207.1| - 0.0092 15.1 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_5 PF01022.15 gi|386002908|ref|YP_005921207.1| - 0.0094 15.5 0.0 0.023 14.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|386002908|ref|YP_005921207.1| - 0.018 14.7 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_1 PF00126.22 gi|386002908|ref|YP_005921207.1| - 0.021 14.5 0.0 0.062 13.0 0.0 1.9 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_13 PF11972.3 gi|386002908|ref|YP_005921207.1| - 0.026 14.3 0.1 0.062 13.1 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_31 PF13560.1 gi|386002908|ref|YP_005921207.1| - 0.027 14.6 0.2 0.19 11.9 0.0 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|386002908|ref|YP_005921207.1| - 0.029 14.3 0.1 0.15 12.1 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|386002908|ref|YP_005921207.1| - 0.053 13.1 0.0 0.16 11.5 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_29 PF13551.1 gi|386002908|ref|YP_005921207.1| - 0.056 13.5 0.1 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_IclR PF09339.5 gi|386002908|ref|YP_005921207.1| - 0.084 12.4 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|386002908|ref|YP_005921207.1| - 0.096 12.5 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Cro PF09048.5 gi|386002908|ref|YP_005921207.1| - 0.1 12.2 0.1 0.84 9.3 0.0 2.4 3 0 0 3 3 3 0 Cro DEAD PF00270.24 gi|386002909|ref|YP_005921208.1| - 5.7e-24 84.4 0.0 2.7e-23 82.3 0.0 2.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|386002909|ref|YP_005921208.1| - 5.4e-12 45.3 0.0 1.3e-11 44.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|386002909|ref|YP_005921208.1| - 2.7e-06 27.3 0.0 4.2e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HTH_38 PF13936.1 gi|386002909|ref|YP_005921208.1| - 0.019 14.5 0.1 0.67 9.5 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain Peptidase_C1 PF00112.18 gi|386002910|ref|YP_005921209.1| - 4.2e-43 147.7 5.0 6.6e-43 147.1 3.5 1.2 1 0 0 1 1 1 1 Papain family cysteine protease DUF4114 PF13448.1 gi|386002910|ref|YP_005921209.1| - 7.6e-09 36.2 0.1 2.6e-08 34.5 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4114) Inhibitor_I42 PF09394.5 gi|386002911|ref|YP_005921210.1| - 1.2e-18 67.1 0.0 1.4e-18 66.9 0.0 1.0 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 MarR_2 PF12802.2 gi|386002913|ref|YP_005921212.1| - 3.2e-07 29.8 0.0 7e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|386002913|ref|YP_005921212.1| - 9.3e-06 25.2 0.2 2e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|386002913|ref|YP_005921212.1| - 1.7e-05 24.2 0.0 3.7e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|386002913|ref|YP_005921212.1| - 3.9e-05 22.9 0.3 0.00056 19.2 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|386002913|ref|YP_005921212.1| - 0.00093 19.4 0.2 0.0018 18.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|386002913|ref|YP_005921212.1| - 0.018 14.7 0.1 0.044 13.4 0.0 1.7 1 1 1 2 2 2 0 MarR family Sigma70_r4 PF04545.11 gi|386002913|ref|YP_005921212.1| - 0.053 12.8 0.0 0.093 12.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Penicillinase_R PF03965.11 gi|386002913|ref|YP_005921212.1| - 0.13 12.3 0.2 0.21 11.7 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor PA14 PF07691.7 gi|386002914|ref|YP_005921213.1| - 0.059 13.0 0.1 0.2 11.2 0.0 1.9 2 0 0 2 2 2 0 PA14 domain DUF2360 PF10152.4 gi|386002914|ref|YP_005921213.1| - 1.8 8.8 7.0 14 5.9 0.1 2.4 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein (DUF2360) DUF11 PF01345.13 gi|386002915|ref|YP_005921214.1| - 2.7e-16 59.3 4.7 6.5e-08 32.5 1.7 3.7 3 1 0 3 3 3 3 Domain of unknown function DUF11 CARDB PF07705.6 gi|386002915|ref|YP_005921214.1| - 7.8e-09 35.5 0.0 0.004 17.1 0.0 3.4 3 0 0 3 3 3 2 CARDB TRAP_beta PF05753.9 gi|386002915|ref|YP_005921214.1| - 9.1e-06 24.9 0.0 0.00049 19.3 0.0 3.0 2 1 1 3 3 3 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|386002915|ref|YP_005921214.1| - 0.00028 20.8 1.4 7.2 6.7 0.0 4.5 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase BatD PF13584.1 gi|386002915|ref|YP_005921214.1| - 0.082 11.4 0.0 2.3 6.7 0.0 2.3 2 0 0 2 2 2 0 Oxygen tolerance DUF824 PF05688.6 gi|386002915|ref|YP_005921214.1| - 0.1 12.2 0.4 0.29 10.8 0.3 1.7 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) Gryzun PF07919.7 gi|386002915|ref|YP_005921214.1| - 0.21 9.8 0.0 0.64 8.2 0.0 1.7 2 0 0 2 2 2 0 Gryzun, putative trafficking through Golgi PKD PF00801.15 gi|386002915|ref|YP_005921214.1| - 0.25 11.1 3.4 4.3 7.1 1.8 2.8 2 1 0 2 2 2 0 PKD domain SPDY PF03771.11 gi|386002917|ref|YP_005921216.1| - 0.14 11.6 5.3 5.1 6.6 0.0 3.7 3 1 0 4 4 4 0 Domain of unknown function (DUF317) Inhibitor_I42 PF09394.5 gi|386002917|ref|YP_005921216.1| - 0.31 11.4 2.2 0.7 10.2 0.1 2.4 2 1 0 2 2 2 0 Chagasin family peptidase inhibitor I42 MTS PF05175.9 gi|386002918|ref|YP_005921217.1| - 1.9e-12 46.8 0.0 2.8e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|386002918|ref|YP_005921217.1| - 4.7e-12 45.9 0.0 8.3e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386002918|ref|YP_005921217.1| - 2.1e-07 31.5 0.0 4e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386002918|ref|YP_005921217.1| - 1.1e-05 25.1 0.0 1.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386002918|ref|YP_005921217.1| - 1.3e-05 24.9 0.0 5.4e-05 22.9 0.0 1.8 2 1 1 3 3 3 1 Methyltransferase domain RrnaAD PF00398.15 gi|386002918|ref|YP_005921217.1| - 3.1e-05 23.1 0.0 4.4e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|386002918|ref|YP_005921217.1| - 0.00016 20.8 0.0 0.00024 20.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.7 gi|386002918|ref|YP_005921217.1| - 0.0004 20.8 0.0 0.00082 19.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|386002918|ref|YP_005921217.1| - 0.00048 20.5 0.0 0.00075 19.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0146 PF03686.8 gi|386002918|ref|YP_005921217.1| - 0.01 15.6 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Methyltransf_25 PF13649.1 gi|386002918|ref|YP_005921217.1| - 0.014 15.7 0.0 0.026 14.8 0.0 1.6 2 1 0 2 2 1 0 Methyltransferase domain PCMT PF01135.14 gi|386002918|ref|YP_005921217.1| - 0.051 13.0 0.0 0.073 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|386002918|ref|YP_005921217.1| - 0.076 12.3 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) tRNA_U5-meth_tr PF05958.6 gi|386002918|ref|YP_005921217.1| - 0.17 10.5 0.0 0.24 10.0 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF1699 PF08004.6 gi|386002920|ref|YP_005921219.1| - 1.9e-29 101.8 0.3 2.1e-29 101.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1699 PF08004.6 gi|386002921|ref|YP_005921220.1| - 5.6e-49 165.0 0.1 6.5e-49 164.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) NOG1 PF06858.9 gi|386002922|ref|YP_005921221.1| - 6.7e-21 73.9 0.0 1.1e-20 73.1 0.0 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|386002922|ref|YP_005921221.1| - 2e-16 59.9 0.0 3.3e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|386002922|ref|YP_005921221.1| - 1.1e-12 47.4 0.0 1.6e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|386002922|ref|YP_005921221.1| - 3.6e-05 24.2 0.0 6.1e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|386002922|ref|YP_005921221.1| - 0.11 12.3 0.2 3.3 7.4 0.0 2.2 1 1 1 2 2 2 0 Dynamin family DnaB_C PF03796.10 gi|386002922|ref|YP_005921221.1| - 0.12 11.2 0.0 12 4.6 0.0 2.4 3 0 0 3 3 3 0 DnaB-like helicase C terminal domain AIG1 PF04548.11 gi|386002922|ref|YP_005921221.1| - 0.14 11.2 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 AIG1 family Gar1 PF04410.9 gi|386002923|ref|YP_005921222.1| - 1.6e-14 53.6 0.2 1.8e-14 53.4 0.1 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.14 gi|386002924|ref|YP_005921223.1| - 1.8e-46 155.8 3.9 5.5e-25 86.9 0.9 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|386002924|ref|YP_005921223.1| - 5.6e-19 67.1 1.3 1.1e-18 66.1 0.6 1.9 2 0 0 2 2 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|386002924|ref|YP_005921223.1| - 7.2e-05 22.0 0.6 0.048 12.9 0.1 3.5 2 1 1 3 3 3 1 Sigma-70, region 4 Cyclin_N PF00134.18 gi|386002924|ref|YP_005921223.1| - 0.0051 16.3 0.0 0.53 9.8 0.0 2.4 1 1 1 2 2 2 1 Cyclin, N-terminal domain zf-ribbon_3 PF13248.1 gi|386002924|ref|YP_005921223.1| - 0.015 14.4 0.2 0.015 14.4 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|386002924|ref|YP_005921223.1| - 0.019 14.6 0.3 0.05 13.2 0.2 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_AsnC-type PF13404.1 gi|386002924|ref|YP_005921223.1| - 0.023 14.2 2.9 0.095 12.2 0.1 3.2 3 1 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_3 PF01381.17 gi|386002924|ref|YP_005921223.1| - 0.023 14.5 0.3 3.2 7.6 0.0 3.9 3 1 1 4 4 4 0 Helix-turn-helix Lar_restr_allev PF14354.1 gi|386002924|ref|YP_005921223.1| - 0.036 14.3 1.7 0.51 10.6 0.7 2.8 2 1 0 2 2 2 0 Restriction alleviation protein Lar HTH_24 PF13412.1 gi|386002924|ref|YP_005921223.1| - 0.047 13.0 0.0 0.38 10.1 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Ribosomal_S27e PF01667.12 gi|386002924|ref|YP_005921223.1| - 0.05 13.1 0.2 0.05 13.1 0.2 2.0 2 0 0 2 2 2 0 Ribosomal protein S27 HTH_31 PF13560.1 gi|386002924|ref|YP_005921223.1| - 0.061 13.5 4.0 2.2 8.5 0.0 3.8 3 1 0 3 3 3 0 Helix-turn-helix domain A2L_zn_ribbon PF08792.5 gi|386002924|ref|YP_005921223.1| - 0.088 12.2 0.9 0.44 10.0 0.6 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain Cyclin_C PF02984.14 gi|386002924|ref|YP_005921223.1| - 0.095 12.6 0.0 13 5.7 0.0 2.7 2 0 0 2 2 2 0 Cyclin, C-terminal domain DNA_ligase_ZBD PF03119.11 gi|386002924|ref|YP_005921223.1| - 0.11 12.2 1.0 0.28 10.9 0.7 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain eIF-5_eIF-2B PF01873.12 gi|386002924|ref|YP_005921223.1| - 0.12 12.0 1.1 1.1 8.8 0.7 2.3 2 0 0 2 2 2 0 Domain found in IF2B/IF5 Elf1 PF05129.8 gi|386002924|ref|YP_005921223.1| - 0.33 10.6 2.4 0.54 9.9 0.5 2.1 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like HTH_23 PF13384.1 gi|386002924|ref|YP_005921223.1| - 0.42 10.3 0.1 0.42 10.3 0.1 3.8 4 1 0 4 4 4 0 Homeodomain-like domain RNA_POL_M_15KD PF02150.11 gi|386002924|ref|YP_005921223.1| - 0.47 10.1 3.4 4.4 7.0 0.4 2.6 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.5 gi|386002924|ref|YP_005921223.1| - 5 7.1 6.0 4.2 7.4 0.3 3.0 2 1 1 3 3 3 0 Zinc ribbon domain PseudoU_synth_1 PF01416.15 gi|386002925|ref|YP_005921224.1| - 1.8e-26 92.5 0.0 3.8e-15 56.2 0.0 2.5 2 1 0 2 2 2 2 tRNA pseudouridine synthase Aconitase PF00330.15 gi|386002926|ref|YP_005921225.1| - 3.6e-77 259.8 0.3 7.8e-49 166.3 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|386002926|ref|YP_005921225.1| - 0.06 11.9 0.0 0.093 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) PALP PF00291.20 gi|386002927|ref|YP_005921226.1| - 5.9e-36 124.2 0.0 7.2e-36 123.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NAD_kinase PF01513.16 gi|386002928|ref|YP_005921227.1| - 1.7e-47 161.6 0.1 2e-47 161.3 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DeoRC PF00455.17 gi|386002928|ref|YP_005921227.1| - 1.1e-05 25.0 0.2 2.3e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 DeoR C terminal sensor domain DAGK_cat PF00781.19 gi|386002928|ref|YP_005921227.1| - 0.0021 17.4 0.4 0.01 15.2 0.1 2.1 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain ATP-synt_D PF01813.12 gi|386002929|ref|YP_005921228.1| - 2.1e-62 210.1 7.0 2.6e-62 209.8 4.8 1.1 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.20 gi|386002930|ref|YP_005921229.1| - 7.6e-55 185.7 0.0 1e-54 185.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|386002930|ref|YP_005921229.1| - 1.9e-14 54.0 0.0 3.2e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|386002930|ref|YP_005921229.1| - 5.8e-10 39.2 2.1 5.8e-10 39.2 1.5 2.0 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|386002930|ref|YP_005921229.1| - 3.3e-05 23.6 1.0 7.3e-05 22.5 0.7 1.6 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|386002931|ref|YP_005921230.1| - 1e-95 319.3 0.0 1.3e-95 318.9 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|386002931|ref|YP_005921230.1| - 7.1e-16 58.6 0.0 1.6e-15 57.5 0.0 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|386002931|ref|YP_005921230.1| - 5.2e-06 26.5 0.2 1.4e-05 25.1 0.1 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.1 gi|386002931|ref|YP_005921230.1| - 0.0022 17.6 0.1 0.0049 16.5 0.0 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.17 gi|386002931|ref|YP_005921230.1| - 0.0095 15.9 0.1 0.091 12.8 0.0 2.3 2 0 0 2 2 2 1 Peptidase family M23 Biotin_lipoyl PF00364.17 gi|386002931|ref|YP_005921230.1| - 0.049 13.2 1.8 0.057 13.0 0.3 1.8 2 0 0 2 2 2 0 Biotin-requiring enzyme ATP-synt_F PF01990.12 gi|386002932|ref|YP_005921231.1| - 1.5e-18 66.9 0.5 1.8e-18 66.7 0.3 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.11 gi|386002933|ref|YP_005921232.1| - 1.7e-78 264.0 0.8 2e-78 263.9 0.6 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.13 gi|386002934|ref|YP_005921233.1| - 1.3e-22 80.0 16.3 4.3e-21 75.1 11.3 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Atg14 PF10186.4 gi|386002934|ref|YP_005921233.1| - 0.044 12.7 1.9 0.059 12.3 1.3 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Gag_p24 PF00607.15 gi|386002934|ref|YP_005921233.1| - 0.076 12.5 0.5 0.12 11.9 0.3 1.3 1 0 0 1 1 1 0 gag gene protein p24 (core nucleocapsid protein) ATP-synt_B PF00430.13 gi|386002934|ref|YP_005921233.1| - 0.44 10.3 12.1 0.47 10.2 7.7 1.6 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) PilO PF04350.8 gi|386002934|ref|YP_005921233.1| - 0.64 9.8 4.3 0.27 11.1 0.7 1.9 1 1 1 2 2 2 0 Pilus assembly protein, PilO FadA PF09403.5 gi|386002934|ref|YP_005921233.1| - 2.3 8.2 9.9 1.6 8.7 5.7 1.6 2 0 0 2 2 2 0 Adhesion protein FadA ATP-synt_C PF00137.16 gi|386002935|ref|YP_005921234.1| - 2e-07 30.7 3.8 2.2e-07 30.6 2.6 1.0 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.14 gi|386002936|ref|YP_005921235.1| - 3.9e-80 269.7 4.3 2.5e-51 174.5 0.0 2.3 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family ATP-synt_B PF00430.13 gi|386002937|ref|YP_005921236.1| - 0.013 15.3 0.5 0.019 14.7 0.3 1.3 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) Phasin PF05597.6 gi|386002937|ref|YP_005921236.1| - 0.02 14.6 0.6 0.021 14.5 0.4 1.0 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) RuBisCO_large PF00016.15 gi|386002938|ref|YP_005921237.1| - 7.2e-68 228.7 2.1 6.3e-67 225.6 1.5 1.9 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|386002938|ref|YP_005921237.1| - 5.5e-16 58.3 0.2 1.5e-14 53.7 0.0 2.4 2 1 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain FBPase_3 PF01950.11 gi|386002939|ref|YP_005921238.1| - 8.4e-182 604.0 0.0 9.6e-182 603.8 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Fer4_7 PF12838.2 gi|386002940|ref|YP_005921239.1| - 2.5e-10 40.5 24.6 0.00011 22.5 2.4 3.1 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|386002940|ref|YP_005921239.1| - 3e-10 39.8 13.0 9.3e-10 38.2 8.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|386002940|ref|YP_005921239.1| - 1e-09 37.5 29.4 2.5e-05 23.6 1.1 4.0 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|386002940|ref|YP_005921239.1| - 1.3e-09 38.6 20.4 0.0017 19.0 2.1 3.3 3 0 0 3 3 3 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|386002940|ref|YP_005921239.1| - 3.2e-08 33.1 30.2 0.00014 21.5 0.8 3.7 3 1 0 3 3 3 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|386002940|ref|YP_005921239.1| - 2.2e-07 31.0 22.1 0.00016 21.8 6.5 2.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386002940|ref|YP_005921239.1| - 3.5e-05 24.0 36.4 0.028 14.9 5.0 3.7 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|386002940|ref|YP_005921239.1| - 5.2e-05 23.2 27.8 0.0081 16.4 3.1 4.1 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386002940|ref|YP_005921239.1| - 5.7e-05 22.8 23.4 0.0043 16.8 7.6 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386002940|ref|YP_005921239.1| - 0.00045 19.9 30.6 0.0066 16.2 1.7 3.8 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|386002940|ref|YP_005921239.1| - 0.0082 16.6 3.2 0.0082 16.6 2.2 3.4 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|386002940|ref|YP_005921239.1| - 0.032 14.5 23.4 0.43 10.9 2.1 3.3 1 1 4 5 5 5 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002940|ref|YP_005921239.1| - 0.29 11.1 25.8 0.32 11.0 11.3 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386002940|ref|YP_005921239.1| - 0.84 9.5 23.3 0.57 10.0 10.2 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386002940|ref|YP_005921239.1| - 1.3 9.5 30.0 0.43 11.0 5.0 3.4 2 2 1 3 3 3 0 4Fe-4S dicluster domain AFOR_C PF01314.13 gi|386002941|ref|YP_005921240.1| - 2.6e-74 250.2 0.0 3.2e-74 249.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|386002941|ref|YP_005921240.1| - 3.5e-61 206.0 0.0 5.1e-61 205.5 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PfkB PF00294.19 gi|386002942|ref|YP_005921241.1| - 3.4e-46 157.7 0.0 4e-46 157.5 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|386002942|ref|YP_005921241.1| - 2.2e-07 30.3 0.0 3.1e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|386002942|ref|YP_005921241.1| - 0.0033 16.7 0.0 0.0041 16.4 0.0 1.1 1 0 0 1 1 1 1 Carbohydrate kinase DeoC PF01791.4 gi|386002943|ref|YP_005921242.1| - 1.4e-41 142.3 0.0 1.7e-41 142.0 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase NTP_transferase PF00483.18 gi|386002944|ref|YP_005921243.1| - 5.3e-21 75.0 0.0 8.1e-21 74.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|386002944|ref|YP_005921243.1| - 3.2e-17 63.0 0.6 4.9e-17 62.4 0.4 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|386002944|ref|YP_005921243.1| - 4.9e-16 57.4 25.4 5.9e-09 35.0 3.7 4.9 3 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|386002944|ref|YP_005921243.1| - 5.6e-06 25.8 7.3 5.6e-06 25.8 5.1 4.6 5 0 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|386002944|ref|YP_005921243.1| - 0.00028 20.4 0.0 0.00043 19.8 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.7 gi|386002944|ref|YP_005921243.1| - 0.34 9.4 0.4 0.49 8.8 0.3 1.3 1 0 0 1 1 1 0 L-fucokinase Thioredox_DsbH PF03190.10 gi|386002945|ref|YP_005921244.1| - 4.6e-76 254.0 0.0 7.3e-76 253.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|386002945|ref|YP_005921244.1| - 3.8e-12 46.0 0.0 1e-11 44.6 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|386002945|ref|YP_005921244.1| - 6.5e-06 25.3 0.6 0.18 10.7 0.0 3.1 3 0 0 3 3 3 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Thioredoxin_2 PF13098.1 gi|386002945|ref|YP_005921244.1| - 0.00021 21.4 0.0 0.00046 20.3 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_76 PF03663.9 gi|386002945|ref|YP_005921244.1| - 0.0013 18.2 0.0 0.98 8.7 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 RPA_interact_N PF14766.1 gi|386002945|ref|YP_005921244.1| - 0.018 14.4 0.4 0.045 13.2 0.3 1.7 1 0 0 1 1 1 0 Replication protein A interacting N-terminal Glyco_hydro_88 PF07470.8 gi|386002945|ref|YP_005921244.1| - 0.087 11.8 0.0 8.3 5.3 0.0 2.3 2 0 0 2 2 2 0 Glycosyl Hydrolase Family 88 Prenyltrans_1 PF13243.1 gi|386002945|ref|YP_005921244.1| - 0.09 12.7 0.2 1.8 8.6 0.0 2.6 2 0 0 2 2 2 0 Prenyltransferase-like IF-2B PF01008.12 gi|386002948|ref|YP_005921247.1| - 1.1e-82 277.1 0.6 1.3e-82 276.9 0.4 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family FMN_red PF03358.10 gi|386002949|ref|YP_005921248.1| - 4.1e-14 52.3 0.2 8.8e-12 44.7 0.2 2.2 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.2 gi|386002949|ref|YP_005921248.1| - 1.5e-12 47.6 0.0 2.2e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|386002949|ref|YP_005921248.1| - 7.7e-09 35.6 0.1 1.2e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.12 gi|386002949|ref|YP_005921248.1| - 3.4e-07 29.9 0.0 3e-05 23.6 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin-like fold Flavodoxin_3 PF12641.2 gi|386002949|ref|YP_005921248.1| - 6e-07 29.0 0.0 7.4e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|386002949|ref|YP_005921248.1| - 0.00093 18.5 0.0 0.017 14.5 0.0 2.0 1 1 1 2 2 2 1 Flavodoxin Cyclophil_like PF04126.8 gi|386002950|ref|YP_005921249.1| - 7.9e-33 112.6 0.0 8.8e-33 112.4 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like DUF3830 PF12903.2 gi|386002950|ref|YP_005921249.1| - 0.014 14.7 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3830) Pro_isomerase PF00160.16 gi|386002950|ref|YP_005921249.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.5 1 1 0 1 1 1 0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF4231 PF14015.1 gi|386002951|ref|YP_005921250.1| - 1.2e-22 80.0 0.0 2.5e-22 78.9 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF4231) DUF433 PF04255.9 gi|386002952|ref|YP_005921251.1| - 2e-22 78.3 0.0 2.4e-22 78.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF433) SHNi-TPR PF10516.4 gi|386002952|ref|YP_005921251.1| - 0.009 15.2 0.4 0.015 14.5 0.3 1.3 1 0 0 1 1 1 1 SHNi-TPR AA_kinase PF00696.23 gi|386002953|ref|YP_005921252.1| - 1.9e-38 132.3 2.9 2.2e-38 132.1 2.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family PYC_OADA PF02436.13 gi|386002954|ref|YP_005921253.1| - 4e-66 222.1 0.4 5.9e-66 221.6 0.3 1.2 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|386002954|ref|YP_005921253.1| - 5.9e-39 134.1 0.0 8.2e-39 133.6 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|386002954|ref|YP_005921253.1| - 6.5e-20 70.5 4.2 1.8e-19 69.1 2.9 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|386002954|ref|YP_005921253.1| - 1.3e-08 34.3 0.3 0.0023 17.5 0.0 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|386002954|ref|YP_005921253.1| - 0.00011 21.5 1.4 0.013 14.6 0.2 2.3 1 1 1 2 2 2 2 HlyD family secretion protein HlyD PF00529.15 gi|386002954|ref|YP_005921253.1| - 0.00063 19.1 0.5 0.35 10.1 0.1 2.3 1 1 1 2 2 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|386002954|ref|YP_005921253.1| - 0.0051 16.4 0.8 0.019 14.6 0.5 2.0 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_3 PF13437.1 gi|386002954|ref|YP_005921253.1| - 0.0055 17.0 0.8 0.28 11.5 0.1 2.7 2 1 1 3 3 3 1 HlyD family secretion protein RnfC_N PF13375.1 gi|386002954|ref|YP_005921253.1| - 0.0078 15.9 0.9 0.033 13.9 0.4 2.0 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain DUF2118 PF09891.4 gi|386002954|ref|YP_005921253.1| - 0.0079 15.9 0.5 0.02 14.6 0.3 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) MarR_2 PF12802.2 gi|386002955|ref|YP_005921254.1| - 5.5e-05 22.7 0.1 0.00014 21.4 0.1 1.6 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|386002955|ref|YP_005921254.1| - 0.0015 18.2 0.0 0.0015 18.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix Rio2_N PF09202.6 gi|386002955|ref|YP_005921254.1| - 0.0037 17.2 0.0 0.0048 16.9 0.0 1.2 1 0 0 1 1 1 1 Rio2, N-terminal DUF4364 PF14277.1 gi|386002955|ref|YP_005921254.1| - 0.005 16.4 0.1 0.0071 15.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_24 PF13412.1 gi|386002955|ref|YP_005921254.1| - 0.0068 15.7 1.0 0.013 14.8 0.3 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|386002955|ref|YP_005921254.1| - 0.012 15.5 0.4 0.075 12.9 0.3 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|386002955|ref|YP_005921254.1| - 0.012 15.8 0.1 0.024 14.9 0.0 1.5 1 1 1 2 2 2 0 Winged helix DNA-binding domain Replic_Relax PF13814.1 gi|386002955|ref|YP_005921254.1| - 0.016 15.0 0.0 0.018 14.9 0.0 1.0 1 0 0 1 1 1 0 Replication-relaxation DUF3116 PF11313.3 gi|386002955|ref|YP_005921254.1| - 0.035 13.7 0.1 0.09 12.3 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3116) HTH_20 PF12840.2 gi|386002955|ref|YP_005921254.1| - 0.075 12.8 0.5 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.14 gi|386002955|ref|YP_005921254.1| - 0.076 12.7 0.1 0.16 11.7 0.0 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|386002955|ref|YP_005921254.1| - 0.084 12.5 0.4 0.46 10.2 0.1 1.9 2 0 0 2 2 2 0 MarR family DUF1699 PF08004.6 gi|386002956|ref|YP_005921255.1| - 8.6e-58 193.5 0.0 9.7e-58 193.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1699 PF08004.6 gi|386002957|ref|YP_005921256.1| - 1.2e-58 196.2 0.0 1.4e-58 196.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1699 PF08004.6 gi|386002958|ref|YP_005921257.1| - 4.6e-56 187.9 0.0 5.2e-56 187.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1699 PF08004.6 gi|386002959|ref|YP_005921258.1| - 4.4e-59 197.7 0.1 5e-59 197.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF4198 PF10670.4 gi|386002960|ref|YP_005921259.1| - 4.2e-16 59.5 0.0 8e-16 58.6 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.1 gi|386002960|ref|YP_005921259.1| - 0.00026 20.9 0.0 0.00066 19.6 0.0 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|386002960|ref|YP_005921259.1| - 0.013 15.5 0.0 0.031 14.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) DUF4198 PF10670.4 gi|386002961|ref|YP_005921260.1| - 1e-22 81.2 0.1 1.5e-22 80.6 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) MG1 PF11974.3 gi|386002961|ref|YP_005921260.1| - 2.1e-05 24.9 0.0 0.00011 22.7 0.0 2.2 2 1 1 3 3 3 1 Alpha-2-macroglobulin MG1 domain CarboxypepD_reg PF13620.1 gi|386002961|ref|YP_005921260.1| - 0.045 13.8 0.1 1.4 9.0 0.0 2.4 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain ABC_tran PF00005.22 gi|386002962|ref|YP_005921261.1| - 3.1e-15 56.6 0.0 4.3e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|386002962|ref|YP_005921261.1| - 1.9e-11 44.5 0.0 2.7e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|386002962|ref|YP_005921261.1| - 0.00012 21.2 0.0 0.00015 20.9 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|386002962|ref|YP_005921261.1| - 0.00046 19.4 0.0 0.00057 19.1 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|386002962|ref|YP_005921261.1| - 0.0073 16.2 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|386002962|ref|YP_005921261.1| - 0.099 11.0 0.0 0.13 10.6 0.0 1.0 1 0 0 1 1 1 0 AAA domain CbiQ PF02361.11 gi|386002963|ref|YP_005921262.1| - 9.9e-28 97.2 8.1 1.4e-27 96.7 5.6 1.1 1 0 0 1 1 1 1 Cobalt transport protein Wzy_C PF04932.10 gi|386002963|ref|YP_005921262.1| - 0.96 9.2 6.7 1.3 8.8 4.6 1.5 1 1 0 1 1 1 0 O-Antigen ligase O-antigen_lig PF13425.1 gi|386002963|ref|YP_005921262.1| - 9.9 6.1 11.3 18 5.3 7.6 1.8 1 1 0 1 1 1 0 O-antigen ligase like membrane protein MG1 PF11974.3 gi|386002964|ref|YP_005921263.1| - 0.0022 18.4 0.0 0.0028 18.1 0.0 1.2 1 0 0 1 1 1 1 Alpha-2-macroglobulin MG1 domain CarboxypepD_reg PF13620.1 gi|386002964|ref|YP_005921263.1| - 0.018 15.1 0.4 0.023 14.7 0.3 1.2 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|386002965|ref|YP_005921264.1| - 0.0019 18.2 0.0 0.0024 17.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.1 gi|386002965|ref|YP_005921264.1| - 0.0049 16.8 0.1 0.0066 16.4 0.1 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|386002965|ref|YP_005921264.1| - 0.037 13.9 0.0 0.048 13.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) MG1 PF11974.3 gi|386002965|ref|YP_005921264.1| - 0.08 13.5 0.0 0.11 13.1 0.0 1.2 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain CbiM PF01891.11 gi|386002966|ref|YP_005921265.1| - 7.8e-51 172.6 19.6 8.7e-51 172.4 13.6 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF4006 PF13179.1 gi|386002966|ref|YP_005921265.1| - 0.17 11.4 1.9 0.55 9.8 1.3 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF4006) DUF4198 PF10670.4 gi|386002967|ref|YP_005921266.1| - 4.4e-10 39.9 0.0 8.1e-10 39.0 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) DUF4198 PF10670.4 gi|386002968|ref|YP_005921267.1| - 1.2e-12 48.3 1.2 1.9e-12 47.6 0.6 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) DUF4198 PF10670.4 gi|386002969|ref|YP_005921268.1| - 5.6e-17 62.4 0.4 7.3e-17 62.0 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) DUF362 PF04015.7 gi|386002970|ref|YP_005921269.1| - 8.9e-47 159.2 0.1 1.3e-46 158.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) YwiC PF14256.1 gi|386002970|ref|YP_005921269.1| - 0.0013 18.7 2.7 0.0013 18.7 1.9 4.0 3 1 0 3 3 3 1 YwiC-like protein His_biosynth PF00977.16 gi|386002971|ref|YP_005921270.1| - 5e-77 258.2 0.4 5.7e-77 258.0 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|386002971|ref|YP_005921270.1| - 2.5e-06 26.5 0.5 0.018 13.8 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|386002971|ref|YP_005921270.1| - 4.2e-05 22.7 3.4 0.062 12.3 0.5 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.20 gi|386002971|ref|YP_005921270.1| - 0.00019 20.4 2.9 0.034 13.0 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|386002971|ref|YP_005921270.1| - 0.0016 17.4 0.6 0.12 11.2 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|386002971|ref|YP_005921270.1| - 0.0019 17.3 1.0 1.1 8.3 0.0 2.5 2 1 0 2 2 2 2 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|386002971|ref|YP_005921270.1| - 0.0048 16.1 1.1 0.039 13.1 0.2 2.1 2 0 0 2 2 2 1 PcrB family NMO PF03060.10 gi|386002971|ref|YP_005921270.1| - 0.059 12.5 8.9 0.45 9.5 1.2 2.1 2 0 0 2 2 2 0 Nitronate monooxygenase DUF11 PF01345.13 gi|386002972|ref|YP_005921271.1| - 2.6e-17 62.6 8.8 0.0044 17.0 0.0 6.6 6 0 0 6 6 6 5 Domain of unknown function DUF11 Chlam_OMP6 PF03504.8 gi|386002972|ref|YP_005921271.1| - 0.013 15.7 0.1 38 4.6 0.0 4.0 4 0 0 4 4 4 0 Chlamydia cysteine-rich outer membrane protein 6 Glyco_hydro_2 PF00703.16 gi|386002973|ref|YP_005921272.1| - 0.0027 18.1 0.2 0.024 15.0 0.1 2.3 2 1 0 2 2 2 1 Glycosyl hydrolases family 2 DUF3316 PF11777.3 gi|386002973|ref|YP_005921272.1| - 0.049 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3316) Big_3_4 PF13754.1 gi|386002973|ref|YP_005921272.1| - 0.081 13.2 2.5 8.5 6.7 0.4 2.7 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) CopC PF04234.7 gi|386002973|ref|YP_005921272.1| - 0.12 12.9 0.0 0.32 11.6 0.0 1.7 1 0 0 1 1 1 0 CopC domain Acylphosphatase PF00708.13 gi|386002974|ref|YP_005921273.1| - 4.2e-23 81.2 0.2 7.8e-23 80.3 0.1 1.4 1 0 0 1 1 1 1 Acylphosphatase DUF3552 PF12072.3 gi|386002974|ref|YP_005921273.1| - 0.16 11.1 17.9 0.97 8.6 11.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) PMC2NT PF08066.7 gi|386002974|ref|YP_005921273.1| - 1.9 8.8 17.8 1.5e+02 2.7 8.0 3.8 1 1 1 2 2 2 0 PMC2NT (NUC016) domain V_ATPase_I PF01496.14 gi|386002974|ref|YP_005921273.1| - 2.8 5.6 5.0 3.4 5.4 3.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF333 PF03891.10 gi|386002975|ref|YP_005921274.1| - 5.3e-17 61.3 0.2 8.8e-17 60.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF333) Lactamase_B PF00753.22 gi|386002976|ref|YP_005921275.1| - 3.6e-13 49.5 1.4 4.6e-12 46.0 0.5 2.5 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily STAS PF01740.16 gi|386002977|ref|YP_005921276.1| - 1.3e-16 60.0 0.0 1.5e-16 59.8 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.1 gi|386002977|ref|YP_005921276.1| - 4.7e-11 42.5 0.0 6.1e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 STAS domain SpoIIE PF07228.7 gi|386002978|ref|YP_005921277.1| - 3.4e-54 183.4 1.9 7.1e-54 182.4 0.6 1.8 2 0 0 2 2 2 1 Stage II sporulation protein E (SpoIIE) 5TM-5TMR_LYT PF07694.7 gi|386002978|ref|YP_005921277.1| - 1.3e-43 148.2 10.8 2e-43 147.6 7.5 1.3 1 0 0 1 1 1 1 5TMR of 5TMR-LYT DUF3816 PF12822.2 gi|386002978|ref|YP_005921277.1| - 0.047 13.5 11.9 0.046 13.6 7.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) YvrJ PF12841.2 gi|386002978|ref|YP_005921277.1| - 0.12 11.6 0.0 0.34 10.2 0.0 1.8 1 0 0 1 1 1 0 YvrJ protein family HATPase_c_2 PF13581.1 gi|386002979|ref|YP_005921278.1| - 1.5e-17 63.5 0.1 1.8e-17 63.3 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Xan_ur_permease PF00860.15 gi|386002980|ref|YP_005921279.1| - 1.1e-60 205.1 33.5 1.7e-60 204.5 23.3 1.2 1 0 0 1 1 1 1 Permease family OTCace_N PF02729.16 gi|386002982|ref|YP_005921281.1| - 7.7e-50 168.2 0.0 1.6e-49 167.2 0.0 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|386002982|ref|YP_005921281.1| - 1.9e-49 167.5 0.0 2.9e-49 166.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Molydop_binding PF01568.16 gi|386002983|ref|YP_005921282.1| - 7.9e-08 32.0 0.0 8.4e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TPP_enzyme_M PF00205.17 gi|386002984|ref|YP_005921283.1| - 0.026 14.3 0.0 1.6 8.4 0.0 2.9 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain FeS PF04060.8 gi|386002985|ref|YP_005921284.1| - 6.2e-16 57.6 2.3 6.2e-16 57.6 1.6 2.6 3 1 1 4 4 3 1 Putative Fe-S cluster Fer4 PF00037.22 gi|386002985|ref|YP_005921284.1| - 1.3e-07 30.9 14.0 2.8e-07 29.8 3.2 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|386002985|ref|YP_005921284.1| - 3.5e-07 29.9 14.4 9.4e-07 28.5 1.3 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386002985|ref|YP_005921284.1| - 1.6e-06 28.3 21.8 0.0001 22.6 6.0 3.4 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386002985|ref|YP_005921284.1| - 4.4e-06 26.3 4.3 4.4e-06 26.3 3.0 3.6 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|386002985|ref|YP_005921284.1| - 4.8e-06 26.1 3.8 4.8e-06 26.1 2.6 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|386002985|ref|YP_005921284.1| - 5.6e-05 23.3 3.6 5.6e-05 23.3 2.5 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386002985|ref|YP_005921284.1| - 0.00051 20.0 28.3 0.0044 17.0 5.6 3.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386002985|ref|YP_005921284.1| - 0.0012 19.0 13.8 0.0012 19.0 9.5 3.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386002985|ref|YP_005921284.1| - 0.0013 18.5 1.2 0.0013 18.5 0.8 3.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386002985|ref|YP_005921284.1| - 0.0062 17.2 19.5 0.064 14.0 3.0 3.1 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_11 PF13247.1 gi|386002985|ref|YP_005921284.1| - 0.0088 15.9 12.1 0.054 13.3 3.1 3.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|386002985|ref|YP_005921284.1| - 0.049 13.9 3.5 0.049 13.9 2.5 3.9 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|386002985|ref|YP_005921284.1| - 0.068 13.7 7.7 0.068 13.7 5.3 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain YhfH PF14149.1 gi|386002985|ref|YP_005921284.1| - 0.094 12.5 0.1 0.094 12.5 0.1 2.4 2 0 0 2 2 2 0 YhfH-like protein Fer4_13 PF13370.1 gi|386002985|ref|YP_005921284.1| - 0.33 11.3 14.0 0.17 12.2 4.8 3.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|386002985|ref|YP_005921284.1| - 1.1 9.6 21.9 0.28 11.6 5.3 3.4 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|386002985|ref|YP_005921284.1| - 2 9.0 14.9 0.36 11.4 5.7 2.7 2 1 0 2 2 1 0 4Fe-4S single cluster domain BatA PF07584.6 gi|386002986|ref|YP_005921285.1| - 3.4e-16 59.1 7.8 3.7e-16 59.0 2.8 2.2 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|386002986|ref|YP_005921285.1| - 0.062 13.4 0.2 0.15 12.1 0.1 1.9 1 1 0 1 1 1 0 von Willebrand factor type A domain VWA_2 PF13519.1 gi|386002987|ref|YP_005921286.1| - 1.1e-24 87.4 0.2 8e-20 71.6 0.0 2.6 2 1 0 2 2 2 2 von Willebrand factor type A domain DUF1355 PF07090.6 gi|386002987|ref|YP_005921286.1| - 5.6e-12 45.3 0.0 3.2e-10 39.6 0.0 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1355) VWA PF00092.23 gi|386002987|ref|YP_005921286.1| - 2.9e-08 33.6 0.0 0.00067 19.4 0.0 2.3 2 0 0 2 2 2 2 von Willebrand factor type A domain DUF4350 PF14258.1 gi|386002987|ref|YP_005921286.1| - 0.011 15.9 0.3 2.7 8.2 0.1 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) SUI1 PF01253.17 gi|386002988|ref|YP_005921287.1| - 6.9e-23 80.2 1.8 8.2e-23 80.0 1.3 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|386002988|ref|YP_005921287.1| - 0.032 14.4 0.5 0.064 13.4 0.4 1.6 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) LSM PF01423.17 gi|386002990|ref|YP_005921289.1| - 9.7e-16 57.0 0.6 1.1e-15 56.9 0.4 1.0 1 0 0 1 1 1 1 LSM domain NifU PF01106.12 gi|386002991|ref|YP_005921290.1| - 4.2e-22 77.7 0.7 4.7e-22 77.5 0.5 1.0 1 0 0 1 1 1 1 NifU-like domain DUF59 PF01883.14 gi|386002991|ref|YP_005921290.1| - 0.037 14.0 0.2 0.17 11.8 0.1 2.0 1 1 0 1 1 1 0 Domain of unknown function DUF59 Nit_Regul_Hom PF10126.4 gi|386002992|ref|YP_005921291.1| - 6.1e-40 135.3 0.0 6.7e-40 135.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII PgpA PF04608.8 gi|386002993|ref|YP_005921292.1| - 1.5e-08 34.5 0.1 1e-07 31.8 0.0 1.9 1 1 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.10 gi|386002994|ref|YP_005921293.1| - 3.6e-47 160.9 16.9 4.1e-47 160.7 11.7 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF2160 PF09928.4 gi|386002994|ref|YP_005921293.1| - 2.5 8.2 5.7 0.76 9.9 0.2 2.6 2 1 1 3 3 3 0 Predicted small integral membrane protein (DUF2160) NTP_transf_3 PF12804.2 gi|386002995|ref|YP_005921294.1| - 1.2e-17 64.4 0.2 1.5e-17 64.1 0.1 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|386002995|ref|YP_005921294.1| - 1.9e-06 27.6 0.0 3e-06 27.0 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|386002995|ref|YP_005921294.1| - 5e-05 22.9 0.0 0.00071 19.1 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|386002995|ref|YP_005921294.1| - 0.018 14.3 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase CofC PF01983.11 gi|386002995|ref|YP_005921294.1| - 0.051 12.5 0.0 0.081 11.8 0.0 1.3 1 0 0 1 1 1 0 Guanylyl transferase CofC like DUF3945 PF13101.1 gi|386002996|ref|YP_005921295.1| - 0.11 11.7 0.0 0.21 10.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) CdhD PF03599.11 gi|386002997|ref|YP_005921296.1| - 5.7e-133 443.1 0.0 6.9e-133 442.8 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|386002997|ref|YP_005921296.1| - 2.5e-15 55.7 1.4 4.8e-15 54.8 1.0 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster CdhD PF03599.11 gi|386002998|ref|YP_005921297.1| - 7.3e-78 261.7 3.3 3.6e-74 249.5 0.5 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit CbiA PF01656.18 gi|386002999|ref|YP_005921298.1| - 1.5e-31 109.3 1.3 1.8e-31 109.0 0.9 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|386002999|ref|YP_005921298.1| - 1.2e-09 37.6 0.4 2.6e-09 36.5 0.3 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|386002999|ref|YP_005921298.1| - 2.2e-07 30.3 0.2 0.0032 16.6 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|386002999|ref|YP_005921298.1| - 1.1e-05 25.4 0.2 0.00017 21.5 0.1 2.3 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|386002999|ref|YP_005921298.1| - 2.1e-05 23.4 0.8 3.9e-05 22.5 0.1 1.8 2 0 0 2 2 2 1 ArgK protein DUF87 PF01935.12 gi|386002999|ref|YP_005921298.1| - 7e-05 22.7 0.3 0.00034 20.5 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF87 MipZ PF09140.6 gi|386002999|ref|YP_005921298.1| - 0.00014 21.0 3.1 0.23 10.5 0.1 2.6 2 1 1 3 3 3 2 ATPase MipZ AAA_19 PF13245.1 gi|386002999|ref|YP_005921298.1| - 0.00032 20.4 0.4 0.00085 19.0 0.1 1.9 2 0 0 2 2 1 1 Part of AAA domain AAA_26 PF13500.1 gi|386002999|ref|YP_005921298.1| - 0.00056 19.5 2.0 0.083 12.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|386002999|ref|YP_005921298.1| - 0.00057 19.3 3.8 0.043 13.2 0.4 2.5 2 1 1 3 3 3 1 SRP54-type protein, GTPase domain YhjQ PF06564.7 gi|386002999|ref|YP_005921298.1| - 0.0008 18.8 0.1 0.41 9.9 0.0 2.2 2 0 0 2 2 2 2 YhjQ protein MobB PF03205.9 gi|386002999|ref|YP_005921298.1| - 0.00081 19.1 0.1 0.002 17.8 0.0 1.9 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|386002999|ref|YP_005921298.1| - 0.0012 18.9 0.2 0.0084 16.2 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|386002999|ref|YP_005921298.1| - 0.0012 18.8 0.0 0.0022 17.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain TrkA_N PF02254.13 gi|386002999|ref|YP_005921298.1| - 0.0077 16.2 0.9 1.2 9.2 0.1 2.4 2 0 0 2 2 2 1 TrkA-N domain ABC_tran PF00005.22 gi|386002999|ref|YP_005921298.1| - 0.0078 16.5 0.2 0.021 15.1 0.1 1.9 1 1 0 1 1 1 1 ABC transporter Toprim PF01751.17 gi|386002999|ref|YP_005921298.1| - 0.01 15.8 1.3 0.43 10.5 0.9 2.4 1 1 0 1 1 1 1 Toprim domain DUF2075 PF09848.4 gi|386002999|ref|YP_005921298.1| - 0.011 14.6 0.2 0.031 13.2 0.1 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|386002999|ref|YP_005921298.1| - 0.012 15.1 0.0 0.029 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|386002999|ref|YP_005921298.1| - 0.013 14.8 1.3 0.041 13.2 0.8 2.1 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|386002999|ref|YP_005921298.1| - 0.014 15.0 0.2 0.022 14.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain HTH_19 PF12844.2 gi|386002999|ref|YP_005921298.1| - 0.017 15.1 0.4 0.048 13.7 0.1 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|386002999|ref|YP_005921298.1| - 0.019 14.8 0.1 0.048 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix KaiC PF06745.8 gi|386002999|ref|YP_005921298.1| - 0.027 13.5 0.1 0.09 11.8 0.0 1.8 2 0 0 2 2 2 0 KaiC APS_kinase PF01583.15 gi|386002999|ref|YP_005921298.1| - 0.03 13.9 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Ras PF00071.17 gi|386002999|ref|YP_005921298.1| - 0.031 13.6 0.1 1.1 8.5 0.0 2.1 2 0 0 2 2 2 0 Ras family PRK PF00485.13 gi|386002999|ref|YP_005921298.1| - 0.031 13.8 0.1 0.072 12.6 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Toprim_4 PF13662.1 gi|386002999|ref|YP_005921298.1| - 0.033 14.2 0.2 0.17 11.8 0.0 2.1 2 0 0 2 2 2 0 Toprim domain AAA_14 PF13173.1 gi|386002999|ref|YP_005921298.1| - 0.036 13.9 0.2 0.14 12.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|386002999|ref|YP_005921298.1| - 0.059 12.3 0.3 0.1 11.5 0.2 1.4 1 0 0 1 1 1 0 PIF1-like helicase FtsK_SpoIIIE PF01580.13 gi|386002999|ref|YP_005921298.1| - 0.068 12.6 0.5 2.2 7.7 0.3 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|386002999|ref|YP_005921298.1| - 0.086 11.7 0.7 0.41 9.5 0.2 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein Helicase_RecD PF05127.9 gi|386002999|ref|YP_005921298.1| - 0.094 12.3 0.0 0.33 10.5 0.0 1.9 2 0 0 2 2 2 0 Helicase Usp PF00582.21 gi|386002999|ref|YP_005921298.1| - 0.1 12.7 0.3 9.2 6.4 0.0 2.7 3 0 0 3 3 3 0 Universal stress protein family Pox_A32 PF04665.7 gi|386002999|ref|YP_005921298.1| - 0.12 11.7 0.5 15 4.7 0.0 2.7 3 0 0 3 3 3 0 Poxvirus A32 protein Methyltransf_24 PF13578.1 gi|386002999|ref|YP_005921298.1| - 0.12 13.2 0.1 0.77 10.6 0.1 2.2 1 1 0 1 1 1 0 Methyltransferase domain NACHT PF05729.7 gi|386002999|ref|YP_005921298.1| - 0.17 11.5 1.2 0.33 10.5 0.8 1.8 1 1 0 1 1 1 0 NACHT domain NTPase_1 PF03266.10 gi|386002999|ref|YP_005921298.1| - 0.81 9.3 4.3 2 8.0 1.2 2.3 2 0 0 2 2 2 0 NTPase AAA_17 PF13207.1 gi|386002999|ref|YP_005921298.1| - 6.4 7.6 6.8 50 4.7 4.4 2.6 1 1 1 2 2 2 0 AAA domain K_channel_TID PF07941.6 gi|386003000|ref|YP_005921299.1| - 0.036 14.2 4.0 0.057 13.6 2.8 1.3 1 0 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain Ribosomal_60s PF00428.14 gi|386003000|ref|YP_005921299.1| - 0.15 12.4 11.7 0.072 13.4 6.7 1.6 2 0 0 2 2 2 0 60s Acidic ribosomal protein CdhC PF03598.10 gi|386003001|ref|YP_005921300.1| - 2.1e-163 543.5 0.0 3.1e-163 543.0 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit RPA_C PF08784.6 gi|386003001|ref|YP_005921300.1| - 0.004 17.5 0.0 0.0079 16.5 0.0 1.5 1 0 0 1 1 1 1 Replication protein A C terminal EAP30 PF04157.11 gi|386003001|ref|YP_005921300.1| - 0.16 11.0 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family CO_dh PF02552.11 gi|386003002|ref|YP_005921301.1| - 1.1e-36 125.9 0.1 1.3e-36 125.7 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|386003002|ref|YP_005921301.1| - 0.0016 18.2 0.1 0.0046 16.7 0.0 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain HsdM_N PF12161.3 gi|386003002|ref|YP_005921301.1| - 0.098 13.0 0.1 0.14 12.5 0.1 1.2 1 0 0 1 1 1 0 HsdM N-terminal domain Prismane PF03063.15 gi|386003003|ref|YP_005921302.1| - 1.1e-89 301.1 0.7 3.2e-73 246.8 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_10 PF13237.1 gi|386003003|ref|YP_005921302.1| - 5.9e-07 29.1 19.4 3.9e-05 23.3 7.7 4.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386003003|ref|YP_005921302.1| - 9.6e-07 28.9 31.4 6.3e-05 23.1 9.0 4.1 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386003003|ref|YP_005921302.1| - 5.9e-06 26.2 11.1 5.9e-06 26.2 7.7 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|386003003|ref|YP_005921302.1| - 3e-05 24.3 17.6 0.00011 22.5 0.4 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386003003|ref|YP_005921302.1| - 0.00023 21.4 5.1 0.0075 16.5 0.3 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386003003|ref|YP_005921302.1| - 0.00034 20.3 20.6 0.0043 16.8 2.4 4.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.22 gi|386003003|ref|YP_005921302.1| - 0.00048 19.6 21.4 0.0014 18.1 2.6 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|386003003|ref|YP_005921302.1| - 0.0014 18.1 7.1 0.01 15.4 5.1 2.3 1 1 1 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_7 PF12838.2 gi|386003003|ref|YP_005921302.1| - 0.0015 18.9 12.7 0.0015 18.9 8.8 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386003003|ref|YP_005921302.1| - 0.011 16.4 11.1 0.41 11.4 0.2 3.9 4 0 0 4 4 4 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|386003003|ref|YP_005921302.1| - 0.015 15.5 4.4 0.015 15.5 3.0 4.6 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|386003003|ref|YP_005921302.1| - 0.017 14.9 3.0 0.017 14.9 2.1 4.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|386003003|ref|YP_005921302.1| - 0.052 13.4 22.7 0.055 13.3 9.4 4.0 3 1 1 4 4 4 0 4Fe-4S dicluster domain Aminotran_1_2 PF00155.16 gi|386003004|ref|YP_005921303.1| - 8.5e-28 97.3 0.0 9.5e-28 97.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|386003004|ref|YP_005921303.1| - 0.00061 18.6 0.0 0.00085 18.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|386003005|ref|YP_005921304.1| - 4.9e-06 25.7 0.0 5.2e-06 25.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II PaaX PF07848.7 gi|386003005|ref|YP_005921304.1| - 0.067 13.2 0.1 0.13 12.2 0.1 1.6 1 0 0 1 1 1 0 PaaX-like protein zf-like PF04071.7 gi|386003006|ref|YP_005921305.1| - 5.4e-22 77.2 2.4 5.8e-22 77.2 1.7 1.1 1 0 0 1 1 1 1 Cysteine-rich small domain CobD_Cbib PF03186.8 gi|386003007|ref|YP_005921306.1| - 2.1e-91 306.0 0.8 2.4e-91 305.8 0.5 1.0 1 0 0 1 1 1 1 CobD/Cbib protein Fe-S_biosyn PF01521.15 gi|386003008|ref|YP_005921307.1| - 1.9e-05 24.5 0.1 5.3e-05 23.1 0.1 1.7 1 1 0 1 1 1 1 Iron-sulphur cluster biosynthesis NTP_transf_2 PF01909.18 gi|386003011|ref|YP_005921310.1| - 2.5e-15 56.5 0.1 2.7e-15 56.4 0.1 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain PIN PF01850.16 gi|386003012|ref|YP_005921311.1| - 1.3e-06 28.7 0.2 2.1e-06 28.0 0.1 1.3 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|386003012|ref|YP_005921311.1| - 0.00035 21.2 0.0 0.0004 21.0 0.0 1.3 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.4 gi|386003012|ref|YP_005921311.1| - 0.019 14.9 0.0 0.023 14.7 0.0 1.1 1 0 0 1 1 1 0 PIN domain DUF104 PF01954.11 gi|386003013|ref|YP_005921312.1| - 8.3e-14 51.3 2.5 9.5e-14 51.1 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Imm2 PF14426.1 gi|386003013|ref|YP_005921312.1| - 0.068 13.1 0.7 0.1 12.6 0.3 1.5 1 1 0 1 1 1 0 Immunity protein Imm2 NTP_transf_2 PF01909.18 gi|386003014|ref|YP_005921313.1| - 8.7e-11 42.0 0.0 9.9e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|386003015|ref|YP_005921314.1| - 1.6e-25 89.0 1.8 1.9e-25 88.8 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 ABC_tran PF00005.22 gi|386003016|ref|YP_005921315.1| - 4.6e-33 114.4 0.0 7.2e-33 113.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|386003016|ref|YP_005921315.1| - 2.7e-12 46.6 0.0 3.1e-10 39.9 0.0 3.3 3 0 0 3 3 3 1 TOBE domain TOBE_2 PF08402.5 gi|386003016|ref|YP_005921315.1| - 1.7e-08 34.3 0.0 3.9e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|386003016|ref|YP_005921315.1| - 7.4e-07 29.4 0.0 0.036 14.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|386003016|ref|YP_005921315.1| - 0.00014 21.2 0.0 0.0029 16.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain T2SE PF00437.15 gi|386003016|ref|YP_005921315.1| - 0.0037 16.2 0.0 0.0063 15.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|386003016|ref|YP_005921315.1| - 0.0048 16.0 0.0 0.0087 15.2 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI DEAD PF00270.24 gi|386003016|ref|YP_005921315.1| - 0.0063 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|386003016|ref|YP_005921315.1| - 0.0071 16.4 0.1 0.032 14.3 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|386003016|ref|YP_005921315.1| - 0.013 15.8 0.0 0.021 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|386003016|ref|YP_005921315.1| - 0.016 14.6 0.0 0.1 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|386003016|ref|YP_005921315.1| - 0.018 15.0 0.0 0.028 14.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|386003016|ref|YP_005921315.1| - 0.03 14.0 0.0 0.071 12.8 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|386003016|ref|YP_005921315.1| - 0.037 13.9 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|386003016|ref|YP_005921315.1| - 0.046 13.2 0.0 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|386003016|ref|YP_005921315.1| - 0.058 13.0 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|386003016|ref|YP_005921315.1| - 0.069 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|386003016|ref|YP_005921315.1| - 0.075 12.9 0.1 0.84 9.5 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|386003016|ref|YP_005921315.1| - 0.14 12.3 0.3 0.53 10.4 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|386003016|ref|YP_005921315.1| - 0.16 11.4 0.0 0.31 10.4 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain BPD_transp_1 PF00528.17 gi|386003017|ref|YP_005921316.1| - 5.3e-20 71.6 8.1 7.3e-20 71.2 5.6 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|386003018|ref|YP_005921317.1| - 8.4e-47 159.7 0.0 9.6e-47 159.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|386003018|ref|YP_005921317.1| - 6.4e-05 22.4 0.0 0.00012 21.5 0.0 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.2 gi|386003018|ref|YP_005921317.1| - 0.0011 17.9 0.0 0.0052 15.7 0.0 2.0 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_6 PF13343.1 gi|386003018|ref|YP_005921317.1| - 0.051 12.8 0.0 0.086 12.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|386003018|ref|YP_005921317.1| - 0.069 12.8 0.1 1.5 8.5 0.0 2.3 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|386003018|ref|YP_005921317.1| - 0.096 12.4 0.0 3 7.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Fer4 PF00037.22 gi|386003019|ref|YP_005921318.1| - 6.4e-14 50.8 16.9 2.4e-07 30.0 1.8 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|386003019|ref|YP_005921318.1| - 2.9e-11 43.5 28.0 2.1e-08 34.3 10.6 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386003019|ref|YP_005921318.1| - 2.6e-10 39.9 11.1 4.9e-10 39.0 7.0 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|386003019|ref|YP_005921318.1| - 3.4e-10 40.0 24.7 2.1e-07 31.1 9.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|386003019|ref|YP_005921318.1| - 4.3e-10 38.9 18.8 7.4e-06 25.5 2.8 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|386003019|ref|YP_005921318.1| - 7.4e-10 38.2 16.3 1.2e-05 24.9 1.8 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|386003019|ref|YP_005921318.1| - 7.9e-07 28.9 18.4 0.00039 20.5 2.1 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|386003019|ref|YP_005921318.1| - 2.3e-06 27.5 24.9 3.3e-05 23.8 9.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|386003019|ref|YP_005921318.1| - 3.2e-06 26.8 12.3 0.0019 18.0 0.7 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386003019|ref|YP_005921318.1| - 3.3e-06 27.7 11.5 0.011 16.5 1.8 2.4 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|386003019|ref|YP_005921318.1| - 1.7e-05 25.1 16.7 0.011 16.1 2.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386003019|ref|YP_005921318.1| - 8.7e-05 22.7 14.8 0.0064 16.8 2.2 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|386003019|ref|YP_005921318.1| - 0.00015 22.0 24.4 0.006 17.0 4.1 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|386003019|ref|YP_005921318.1| - 0.00021 21.6 11.4 0.017 15.5 0.8 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain NIL PF09383.5 gi|386003019|ref|YP_005921318.1| - 0.00024 20.6 0.1 0.00032 20.2 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_11 PF13247.1 gi|386003019|ref|YP_005921318.1| - 0.0066 16.3 6.1 0.0066 16.3 4.2 1.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|386003019|ref|YP_005921318.1| - 0.46 11.0 18.2 0.57 10.7 2.3 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain c-SKI_SMAD_bind PF08782.5 gi|386003019|ref|YP_005921318.1| - 3.2 7.9 8.1 2.7 8.1 0.4 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Fer4_19 PF06902.6 gi|386003019|ref|YP_005921318.1| - 6.2 6.7 11.2 21 5.0 6.5 2.6 1 1 1 2 2 2 0 Divergent 4Fe-4S mono-cluster DUF39 PF01837.11 gi|386003020|ref|YP_005921319.1| - 8.4e-142 471.8 0.0 1e-141 471.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|386003020|ref|YP_005921319.1| - 1.5e-26 91.8 0.9 5.8e-12 45.2 0.1 2.5 2 0 0 2 2 2 2 CBS domain DUF3659 PF12396.3 gi|386003020|ref|YP_005921319.1| - 0.038 13.6 0.0 2.4 7.8 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Radical_SAM PF04055.16 gi|386003021|ref|YP_005921320.1| - 1.3e-09 38.4 0.0 3.2e-09 37.1 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|386003021|ref|YP_005921320.1| - 0.048 13.5 0.0 0.19 11.5 0.0 2.0 3 0 0 3 3 3 0 B12 binding domain DUF2551 PF10826.3 gi|386003022|ref|YP_005921321.1| - 8.1e-32 108.9 0.3 9.7e-32 108.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.14 gi|386003022|ref|YP_005921321.1| - 0.0028 17.5 0.1 0.0034 17.2 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_32 PF13565.1 gi|386003022|ref|YP_005921321.1| - 0.048 14.4 0.0 0.13 13.0 0.0 1.7 1 1 0 1 1 1 0 Homeodomain-like domain Radical_SAM PF04055.16 gi|386003023|ref|YP_005921322.1| - 1.9e-08 34.6 0.0 8.6e-08 32.5 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|386003023|ref|YP_005921322.1| - 1e-07 31.9 0.0 1.8e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|386003023|ref|YP_005921322.1| - 1.3e-07 31.8 0.0 2.2e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain SRP54 PF00448.17 gi|386003024|ref|YP_005921323.1| - 4.7e-70 235.0 2.4 7.4e-70 234.4 1.7 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|386003024|ref|YP_005921323.1| - 1e-30 106.0 2.4 1e-30 106.0 1.7 2.9 2 1 1 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|386003024|ref|YP_005921323.1| - 3e-19 68.8 0.1 4.3e-18 65.1 0.0 2.6 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|386003024|ref|YP_005921323.1| - 1.2e-08 34.6 2.9 1.8e-07 30.7 2.0 2.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|386003024|ref|YP_005921323.1| - 6.9e-06 25.6 1.8 0.0001 21.8 1.3 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|386003024|ref|YP_005921323.1| - 0.00012 21.8 0.3 0.00045 19.9 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|386003024|ref|YP_005921323.1| - 0.00014 21.7 0.0 0.00034 20.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|386003024|ref|YP_005921323.1| - 0.00014 20.7 0.3 0.00037 19.3 0.2 1.7 1 1 0 1 1 1 1 ArgK protein APS_kinase PF01583.15 gi|386003024|ref|YP_005921323.1| - 0.0013 18.4 0.0 0.0037 16.9 0.0 1.8 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_17 PF13207.1 gi|386003024|ref|YP_005921323.1| - 0.0016 19.2 0.1 0.006 17.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|386003024|ref|YP_005921323.1| - 0.0034 16.5 0.0 0.0079 15.3 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin TrwB_AAD_bind PF10412.4 gi|386003024|ref|YP_005921323.1| - 0.0052 15.4 0.1 0.0097 14.5 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|386003024|ref|YP_005921323.1| - 0.006 16.5 0.5 0.016 15.1 0.1 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|386003024|ref|YP_005921323.1| - 0.0069 15.8 0.3 0.026 13.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|386003024|ref|YP_005921323.1| - 0.0077 15.4 0.0 0.02 14.0 0.0 1.7 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|386003024|ref|YP_005921323.1| - 0.0081 16.3 0.1 0.039 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|386003024|ref|YP_005921323.1| - 0.0089 15.7 0.4 0.033 13.9 0.0 2.1 3 0 0 3 3 1 1 Part of AAA domain AAA_18 PF13238.1 gi|386003024|ref|YP_005921323.1| - 0.0091 16.2 0.7 0.04 14.2 0.2 2.4 2 1 0 2 2 1 1 AAA domain 6PF2K PF01591.13 gi|386003024|ref|YP_005921323.1| - 0.011 14.7 0.0 0.026 13.5 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase MMR_HSR1 PF01926.18 gi|386003024|ref|YP_005921323.1| - 0.02 14.8 0.1 0.12 12.3 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase SRPRB PF09439.5 gi|386003024|ref|YP_005921323.1| - 0.024 13.8 0.2 0.36 10.0 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_30 PF13604.1 gi|386003024|ref|YP_005921323.1| - 0.025 14.1 1.5 0.056 13.0 0.2 2.2 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|386003024|ref|YP_005921323.1| - 0.047 13.1 2.2 3 7.3 0.2 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Thymidylate_kin PF02223.12 gi|386003024|ref|YP_005921323.1| - 0.053 12.8 0.1 0.15 11.4 0.0 1.8 1 0 0 1 1 1 0 Thymidylate kinase AAA_5 PF07728.9 gi|386003024|ref|YP_005921323.1| - 0.054 13.2 0.1 0.2 11.3 0.0 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|386003024|ref|YP_005921323.1| - 0.06 13.0 0.1 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_10 PF12846.2 gi|386003024|ref|YP_005921323.1| - 0.063 12.7 0.1 0.12 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain ATP_bind_1 PF03029.12 gi|386003024|ref|YP_005921323.1| - 0.069 12.6 0.0 0.2 11.1 0.0 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.24 gi|386003024|ref|YP_005921323.1| - 0.11 12.7 1.1 0.78 9.9 0.3 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|386003024|ref|YP_005921323.1| - 0.13 12.0 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_26 PF13500.1 gi|386003024|ref|YP_005921323.1| - 0.15 11.6 1.7 4.7 6.7 0.2 2.4 2 0 0 2 2 2 0 AAA domain Glyco_transf_4 PF13439.1 gi|386003024|ref|YP_005921323.1| - 0.15 11.7 0.0 0.37 10.4 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase Family 4 AAA_28 PF13521.1 gi|386003024|ref|YP_005921323.1| - 0.25 11.2 1.9 0.55 10.1 0.2 2.4 2 1 1 3 3 3 0 AAA domain GTP_EFTU PF00009.22 gi|386003024|ref|YP_005921323.1| - 0.44 9.9 4.4 0.33 10.3 1.3 2.2 2 1 0 2 2 1 0 Elongation factor Tu GTP binding domain Prenyltransf PF01255.14 gi|386003025|ref|YP_005921324.1| - 2.4e-69 232.8 0.0 3e-69 232.5 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase BON PF04972.12 gi|386003025|ref|YP_005921324.1| - 0.12 12.1 0.7 0.31 10.8 0.0 1.9 2 0 0 2 2 2 0 BON domain eIF-1a PF01176.14 gi|386003026|ref|YP_005921325.1| - 6.1e-27 92.8 0.8 7.2e-27 92.5 0.6 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|386003027|ref|YP_005921326.1| - 7.6e-64 214.5 0.0 1.1e-63 213.9 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|386003027|ref|YP_005921326.1| - 4e-06 26.1 0.0 6.1e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|386003027|ref|YP_005921326.1| - 1.7e-05 23.9 0.1 0.00013 21.1 0.0 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|386003027|ref|YP_005921326.1| - 0.0011 18.7 0.0 0.0097 15.6 0.0 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family KH_1 PF00013.24 gi|386003028|ref|YP_005921327.1| - 8.5e-17 60.5 7.9 8.9e-10 38.0 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|386003028|ref|YP_005921327.1| - 1.7e-06 27.5 5.7 0.00012 21.6 0.0 2.5 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|386003028|ref|YP_005921327.1| - 0.52 9.9 3.0 2 8.1 0.1 2.9 3 1 1 4 4 4 0 KH domain KH_2 PF07650.12 gi|386003028|ref|YP_005921327.1| - 1.9 8.1 5.4 5.5 6.6 1.1 2.7 2 2 1 3 3 3 0 KH domain FdhD-NarQ PF02634.10 gi|386003029|ref|YP_005921328.1| - 4.5e-49 167.0 0.2 1.4e-47 162.1 0.1 2.0 1 1 0 1 1 1 1 FdhD/NarQ family Peptidase_M50 PF02163.17 gi|386003030|ref|YP_005921329.1| - 1.2e-26 92.9 0.0 6.1e-26 90.5 0.0 2.1 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|386003030|ref|YP_005921329.1| - 8.5e-10 38.4 0.1 2.6e-06 27.2 0.0 2.3 1 1 0 2 2 2 2 PDZ domain PDZ PF00595.19 gi|386003030|ref|YP_005921329.1| - 3.7e-05 23.7 0.0 0.00011 22.2 0.0 1.8 1 1 1 2 2 2 1 PDZ domain (Also known as DHR or GLGF) PDZ_1 PF12812.2 gi|386003030|ref|YP_005921329.1| - 0.013 15.4 0.0 0.16 11.8 0.0 2.5 3 0 0 3 3 3 0 PDZ-like domain DUF3267 PF11667.3 gi|386003030|ref|YP_005921329.1| - 6.7 6.9 11.6 1.9 8.7 0.1 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF3267) Hydantoinase_A PF01968.13 gi|386003031|ref|YP_005921330.1| - 1.5e-11 43.9 3.5 1.6e-10 40.6 0.3 2.6 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.1 gi|386003031|ref|YP_005921330.1| - 0.0095 14.3 0.5 0.076 11.3 0.0 2.0 2 0 0 2 2 2 1 MutL protein FrhB_FdhB_C PF04432.8 gi|386003032|ref|YP_005921331.1| - 8.3e-40 135.8 0.0 1.3e-39 135.1 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|386003032|ref|YP_005921331.1| - 2.3e-21 75.4 1.3 2.3e-21 75.4 0.9 1.6 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_9 PF13187.1 gi|386003032|ref|YP_005921331.1| - 0.00036 20.7 5.6 0.016 15.4 1.0 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|386003032|ref|YP_005921331.1| - 0.0019 18.2 2.3 0.63 10.1 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|386003032|ref|YP_005921331.1| - 0.007 16.6 3.5 0.74 10.2 0.6 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|386003032|ref|YP_005921331.1| - 0.018 14.8 11.1 0.018 14.8 7.7 2.1 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|386003032|ref|YP_005921331.1| - 0.018 15.4 8.3 0.14 12.5 0.7 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|386003032|ref|YP_005921331.1| - 0.062 14.0 5.0 4.1 8.2 1.0 2.9 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|386003032|ref|YP_005921331.1| - 0.073 12.7 20.5 0.096 12.3 5.2 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain COX5A PF02284.11 gi|386003032|ref|YP_005921331.1| - 0.082 12.8 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Cytochrome c oxidase subunit Va Fer4_4 PF12800.2 gi|386003032|ref|YP_005921331.1| - 0.73 10.3 15.5 1 9.8 0.3 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|386003032|ref|YP_005921331.1| - 1.2 9.0 10.6 6 6.8 7.3 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|386003032|ref|YP_005921331.1| - 3.9 7.5 18.3 6.6 6.7 0.5 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|386003032|ref|YP_005921331.1| - 6.1 7.3 10.5 0.32 11.4 0.8 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain MMR_HSR1_C PF08438.5 gi|386003033|ref|YP_005921332.1| - 7.3e-32 109.8 0.0 1.2e-31 109.2 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|386003033|ref|YP_005921332.1| - 1.2e-15 57.4 0.0 2.4e-15 56.4 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|386003033|ref|YP_005921332.1| - 2.9e-13 49.4 0.0 6.3e-13 48.3 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|386003033|ref|YP_005921332.1| - 5.7e-08 32.1 0.1 6.4e-07 28.7 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B ThiS PF02597.15 gi|386003033|ref|YP_005921332.1| - 0.084 13.3 0.0 0.3 11.5 0.0 1.9 2 0 0 2 2 2 0 ThiS family Ras PF00071.17 gi|386003034|ref|YP_005921333.1| - 1.7e-18 66.5 0.0 3.2e-18 65.6 0.0 1.4 1 0 0 1 1 1 1 Ras family Metallophos PF00149.23 gi|386003034|ref|YP_005921333.1| - 8.3e-14 51.4 6.6 9.7e-13 47.9 4.6 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase WD40 PF00400.27 gi|386003034|ref|YP_005921333.1| - 8.6e-11 41.2 0.2 6.3e-09 35.3 0.0 3.0 2 0 0 2 2 2 1 WD domain, G-beta repeat Miro PF08477.8 gi|386003034|ref|YP_005921333.1| - 1.2e-09 38.7 0.0 3.3e-09 37.2 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein Metallophos_2 PF12850.2 gi|386003034|ref|YP_005921333.1| - 1.1e-08 35.1 0.0 2.4e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Arf PF00025.16 gi|386003034|ref|YP_005921333.1| - 4.4e-06 26.0 0.0 8.3e-06 25.1 0.0 1.4 1 0 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1 PF01926.18 gi|386003034|ref|YP_005921333.1| - 8.5e-05 22.4 0.0 0.0004 20.3 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase Flavodoxin_2 PF02525.12 gi|386003035|ref|YP_005921334.1| - 0.00019 20.9 0.0 0.00021 20.8 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold AcetylCoA_hyd_C PF13336.1 gi|386003036|ref|YP_005921335.1| - 2e-61 206.1 0.0 3.3e-61 205.4 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|386003036|ref|YP_005921335.1| - 1.3e-43 149.0 0.0 4.8e-43 147.2 0.0 1.8 1 1 1 2 2 2 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.19 gi|386003036|ref|YP_005921335.1| - 6.6e-10 38.8 0.0 1.4e-09 37.8 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|386003036|ref|YP_005921335.1| - 3.9e-09 36.6 0.0 7.4e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|386003036|ref|YP_005921335.1| - 1.3e-08 35.1 0.0 2.3e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|386003036|ref|YP_005921335.1| - 0.00044 20.3 0.0 0.0015 18.6 0.0 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|386003036|ref|YP_005921335.1| - 0.00091 19.3 0.0 0.0021 18.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|386003036|ref|YP_005921335.1| - 0.002 17.8 0.0 0.0044 16.7 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|386003036|ref|YP_005921335.1| - 0.017 15.0 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Cpn60_TCP1 PF00118.19 gi|386003037|ref|YP_005921336.1| - 1.3e-153 512.1 12.0 1.5e-153 511.9 8.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family FbpA PF05833.6 gi|386003039|ref|YP_005921338.1| - 6.9e-83 278.6 0.0 8.9e-83 278.3 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|386003039|ref|YP_005921338.1| - 9.7e-25 86.2 0.0 1.6e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF814) Mut7-C PF01927.11 gi|386003040|ref|YP_005921339.1| - 8.7e-37 126.3 0.0 9.9e-37 126.1 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain Glyoxalase_2 PF12681.2 gi|386003040|ref|YP_005921339.1| - 0.073 13.6 0.0 0.13 12.8 0.0 1.5 1 1 0 1 1 1 0 Glyoxalase-like domain DUF3268 PF11672.3 gi|386003040|ref|YP_005921339.1| - 0.11 12.5 0.1 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) A2L_zn_ribbon PF08792.5 gi|386003040|ref|YP_005921339.1| - 0.13 11.7 1.1 3.5 7.1 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Desulfoferrod_N PF06397.7 gi|386003040|ref|YP_005921339.1| - 0.15 11.5 0.6 0.82 9.1 0.0 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain ACP_syn_III_C PF08541.5 gi|386003041|ref|YP_005921340.1| - 1.3e-19 70.0 0.0 2.4e-18 65.9 0.0 2.6 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|386003041|ref|YP_005921340.1| - 1.9e-14 53.0 0.1 4.2e-14 51.9 0.1 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Chal_sti_synt_N PF00195.14 gi|386003041|ref|YP_005921340.1| - 1.2e-05 24.6 0.1 3e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 Chalcone and stilbene synthases, N-terminal domain FAE1_CUT1_RppA PF08392.7 gi|386003041|ref|YP_005921340.1| - 2.9e-05 23.2 0.0 7.6e-05 21.9 0.0 1.6 1 1 0 1 1 1 1 FAE1/Type III polyketide synthase-like protein Methyltransf_11 PF08241.7 gi|386003042|ref|YP_005921341.1| - 1.6e-21 76.5 0.0 3.9e-21 75.3 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|386003042|ref|YP_005921341.1| - 1.1e-19 70.4 0.0 1.8e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|386003042|ref|YP_005921341.1| - 1.2e-13 51.1 0.0 3.4e-13 49.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|386003042|ref|YP_005921341.1| - 1.7e-13 50.9 0.0 3.4e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|386003042|ref|YP_005921341.1| - 7.3e-13 48.1 0.0 1.1e-12 47.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|386003042|ref|YP_005921341.1| - 2.5e-12 47.0 0.0 4.4e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|386003042|ref|YP_005921341.1| - 2.5e-10 40.9 0.0 8.9e-10 39.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|386003042|ref|YP_005921341.1| - 2.9e-07 30.0 0.0 5.4e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|386003042|ref|YP_005921341.1| - 3.6e-07 29.4 0.0 6e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_9 PF08003.6 gi|386003042|ref|YP_005921341.1| - 3.3e-06 26.0 0.0 4.8e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_26 PF13659.1 gi|386003042|ref|YP_005921341.1| - 3.5e-06 27.0 0.0 7.3e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|386003042|ref|YP_005921341.1| - 6.4e-05 22.1 0.0 8.3e-05 21.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|386003042|ref|YP_005921341.1| - 0.0012 18.5 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|386003042|ref|YP_005921341.1| - 0.0022 17.5 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|386003042|ref|YP_005921341.1| - 0.0067 15.5 0.0 0.0095 15.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|386003042|ref|YP_005921341.1| - 0.011 14.7 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) UPF0020 PF01170.13 gi|386003042|ref|YP_005921341.1| - 0.12 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DOT1 PF08123.8 gi|386003042|ref|YP_005921341.1| - 0.16 11.2 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Plasmid_stabil PF05016.9 gi|386003043|ref|YP_005921342.1| - 2e-05 24.8 0.0 2.9e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein HTH_24 PF13412.1 gi|386003043|ref|YP_005921342.1| - 0.21 11.0 1.1 0.58 9.5 0.0 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF217 PF02697.9 gi|386003044|ref|YP_005921343.1| - 6.5e-06 26.3 0.1 7e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 UPF0150 PF03681.10 gi|386003045|ref|YP_005921344.1| - 2.2e-17 62.3 0.1 2.7e-17 62.1 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|386003045|ref|YP_005921344.1| - 0.002 17.6 0.0 0.0028 17.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) UPF0150 PF03681.10 gi|386003046|ref|YP_005921345.1| - 1.4e-11 43.8 0.1 1.9e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Plasmid_stabil PF05016.9 gi|386003047|ref|YP_005921346.1| - 8.1e-07 29.3 0.1 1.2e-06 28.8 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein DUF217 PF02697.9 gi|386003048|ref|YP_005921347.1| - 0.00017 21.7 0.0 0.00017 21.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 SIR2_2 PF13289.1 gi|386003049|ref|YP_005921348.1| - 1.1e-11 44.8 0.0 3.2e-11 43.3 0.0 1.8 2 0 0 2 2 2 1 SIR2-like domain SIR2 PF02146.12 gi|386003049|ref|YP_005921348.1| - 0.013 15.2 0.0 0.22 11.2 0.0 2.5 2 0 0 2 2 2 0 Sir2 family HAD PF12710.2 gi|386003049|ref|YP_005921348.1| - 0.073 13.2 0.0 0.23 11.6 0.0 1.9 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|386003050|ref|YP_005921349.1| - 4.7e-72 241.7 4.2 9.5e-72 240.7 2.2 2.1 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|386003050|ref|YP_005921349.1| - 1e-44 152.2 0.5 1e-44 152.2 0.4 2.1 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|386003050|ref|YP_005921349.1| - 6.3e-33 114.9 0.0 1.8e-32 113.5 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|386003050|ref|YP_005921349.1| - 1.5e-20 72.4 0.5 7.3e-20 70.2 0.0 2.3 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|386003050|ref|YP_005921349.1| - 7.5e-16 57.8 0.0 1.4e-15 56.9 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|386003050|ref|YP_005921349.1| - 5.2e-15 56.1 0.2 2e-14 54.2 0.0 2.2 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|386003050|ref|YP_005921349.1| - 6.6e-05 22.6 1.1 0.003 17.1 0.3 2.4 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase UPF0146 PF03686.8 gi|386003051|ref|YP_005921350.1| - 9.1e-27 93.3 0.0 1e-26 93.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Thi4 PF01946.12 gi|386003052|ref|YP_005921351.1| - 9.2e-86 286.6 4.0 1.1e-85 286.4 2.8 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|386003052|ref|YP_005921351.1| - 2.3e-05 23.6 2.5 3.7e-05 23.0 1.8 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|386003052|ref|YP_005921351.1| - 0.00026 20.9 0.2 0.00088 19.2 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|386003052|ref|YP_005921351.1| - 0.0003 20.7 0.3 0.00039 20.3 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|386003052|ref|YP_005921351.1| - 0.0038 15.7 2.0 0.0056 15.1 1.4 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|386003052|ref|YP_005921351.1| - 0.0072 16.3 0.9 0.012 15.6 0.4 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|386003052|ref|YP_005921351.1| - 0.01 14.7 0.1 0.023 13.6 0.0 1.5 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.19 gi|386003052|ref|YP_005921351.1| - 0.01 14.6 1.2 0.01 14.6 0.9 2.6 3 0 0 3 3 3 0 FAD binding domain FAD_binding_3 PF01494.14 gi|386003052|ref|YP_005921351.1| - 0.016 14.3 0.1 0.024 13.7 0.0 1.5 1 1 0 1 1 1 0 FAD binding domain DAO PF01266.19 gi|386003052|ref|YP_005921351.1| - 0.021 13.7 6.1 0.39 9.5 0.2 2.1 1 1 0 2 2 2 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|386003052|ref|YP_005921351.1| - 0.049 12.5 2.2 0.14 11.0 0.3 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|386003052|ref|YP_005921351.1| - 0.14 11.9 0.2 0.26 11.0 0.1 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding FtsZ_C PF12327.3 gi|386003053|ref|YP_005921352.1| - 5.1e-18 64.9 0.4 1.2e-17 63.6 0.1 1.8 2 0 0 2 2 2 1 FtsZ family, C-terminal domain UbiD PF01977.11 gi|386003054|ref|YP_005921353.1| - 6.2e-107 357.5 0.0 7.1e-107 357.3 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF1614 PF07758.6 gi|386003055|ref|YP_005921354.1| - 1.3e-52 178.1 16.0 1.9e-52 177.5 11.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) ParA PF10609.4 gi|386003056|ref|YP_005921355.1| - 1.7e-33 114.3 0.0 2.8e-33 113.6 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|386003056|ref|YP_005921355.1| - 2.2e-21 76.1 0.0 2.9e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|386003056|ref|YP_005921355.1| - 3.6e-08 33.4 0.0 2.6e-07 30.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|386003056|ref|YP_005921355.1| - 7.4e-07 28.4 0.3 1.6e-06 27.4 0.2 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|386003056|ref|YP_005921355.1| - 1.7e-05 24.0 0.1 4.2e-05 22.7 0.0 1.6 2 0 0 2 2 2 1 ATPase MipZ AAA_25 PF13481.1 gi|386003056|ref|YP_005921355.1| - 0.0015 17.9 0.1 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|386003056|ref|YP_005921355.1| - 0.0061 16.2 3.8 0.0067 16.1 0.2 2.6 2 1 0 2 2 2 1 Part of AAA domain VirC1 PF07015.6 gi|386003056|ref|YP_005921355.1| - 0.0074 15.3 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein DUF258 PF03193.11 gi|386003056|ref|YP_005921355.1| - 0.013 14.7 0.2 0.019 14.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Fer4_NifH PF00142.13 gi|386003056|ref|YP_005921355.1| - 0.014 14.5 0.2 0.023 13.8 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|386003056|ref|YP_005921355.1| - 0.015 14.7 0.2 0.023 14.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.15 gi|386003056|ref|YP_005921355.1| - 0.033 13.8 0.1 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase PhoH PF02562.11 gi|386003056|ref|YP_005921355.1| - 0.043 13.0 0.1 0.081 12.1 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_26 PF13500.1 gi|386003056|ref|YP_005921355.1| - 0.063 12.8 0.2 1.3 8.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|386003056|ref|YP_005921355.1| - 0.075 11.8 0.4 0.11 11.2 0.3 1.2 1 0 0 1 1 1 0 ArgK protein AAA_10 PF12846.2 gi|386003056|ref|YP_005921355.1| - 0.12 11.8 0.2 0.2 11.0 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain NB-ARC PF00931.17 gi|386003056|ref|YP_005921355.1| - 0.12 11.1 0.3 0.16 10.7 0.2 1.1 1 0 0 1 1 1 0 NB-ARC domain YhjQ PF06564.7 gi|386003056|ref|YP_005921355.1| - 0.18 11.1 0.2 1.2 8.4 0.1 1.9 2 0 0 2 2 2 0 YhjQ protein MS_channel PF00924.13 gi|386003058|ref|YP_005921357.1| - 1.4e-43 148.6 0.1 2e-43 148.1 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel PRA1 PF03208.14 gi|386003058|ref|YP_005921357.1| - 0.057 12.7 3.7 0.1 11.9 2.6 1.4 1 0 0 1 1 1 0 PRA1 family protein LMBR1 PF04791.11 gi|386003058|ref|YP_005921357.1| - 0.15 10.6 1.6 0.21 10.1 1.1 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF99 PF01949.11 gi|386003059|ref|YP_005921358.1| - 2.1e-55 186.7 0.0 2.4e-55 186.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 S-layer PF07752.6 gi|386003062|ref|YP_005921361.1| - 0.0012 18.1 0.1 0.0015 17.8 0.0 1.1 1 0 0 1 1 1 1 S-layer protein DUF350 PF03994.9 gi|386003062|ref|YP_005921361.1| - 1.8 8.3 5.3 6.2 6.6 3.6 1.9 1 0 0 1 1 1 0 Domain of Unknown Function (DUF350) CbiX PF01903.12 gi|386003063|ref|YP_005921362.1| - 3e-25 88.3 0.0 3.7e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|386003063|ref|YP_005921362.1| - 0.00027 20.1 0.0 0.00031 19.9 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|386003063|ref|YP_005921362.1| - 0.16 10.8 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Ferrochelatase Mur_ligase_M PF08245.7 gi|386003064|ref|YP_005921363.1| - 0.00027 21.0 0.3 0.00041 20.4 0.2 1.3 1 0 0 1 1 1 1 Mur ligase middle domain CbiA PF01656.18 gi|386003064|ref|YP_005921363.1| - 0.06 12.7 1.3 0.1 11.9 0.9 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Oxidored_nitro PF00148.14 gi|386003065|ref|YP_005921364.1| - 6.8e-20 71.0 0.5 1.8e-19 69.6 0.4 1.6 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SecE PF00584.15 gi|386003066|ref|YP_005921365.1| - 0.015 14.8 0.1 0.017 14.6 0.0 1.1 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex Na_Pi_cotrans PF02690.10 gi|386003067|ref|YP_005921366.1| - 1.7e-56 189.8 34.4 7.8e-36 122.9 5.8 3.2 1 1 1 3 3 3 3 Na+/Pi-cotransporter PhoU PF01895.14 gi|386003067|ref|YP_005921366.1| - 0.00014 22.2 1.2 0.62 10.5 0.3 2.4 2 0 0 2 2 2 2 PhoU domain DUF2376 PF09550.5 gi|386003067|ref|YP_005921366.1| - 0.14 12.3 0.9 0.58 10.3 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical phage protein (DUF2376) Iso_dh PF00180.15 gi|386003068|ref|YP_005921367.1| - 8.4e-91 304.4 0.0 4.9e-90 301.9 0.0 1.8 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|386003070|ref|YP_005921369.1| - 1.9e-20 73.2 0.0 2.5e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain IlvN PF07991.7 gi|386003070|ref|YP_005921369.1| - 0.043 13.1 0.1 0.063 12.6 0.1 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain