#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
DUF3213	PF11491.3	gi|330506031|ref|YP_004399689.1|	-	0.22	11.4	1.4	0.48	10.3	0.9	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3213)
VirE	PF05272.6	gi|330506034|ref|YP_004399692.1|	-	0.0047	16.4	0.1	0.0084	15.6	0.1	1.3	1	0	0	1	1	1	1	Virulence-associated	protein	E
QRPTase_N	PF02749.11	gi|330506034|ref|YP_004399692.1|	-	0.1	12.4	0.0	0.33	10.7	0.0	1.9	2	0	0	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
DUF3223	PF11523.3	gi|330506035|ref|YP_004399693.1|	-	3.9e-12	46.2	0.9	7e-12	45.4	0.1	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3223)
SBDS	PF01172.13	gi|330506035|ref|YP_004399693.1|	-	0.026	14.2	1.5	0.67	9.7	0.2	2.4	2	1	0	2	2	2	0	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
PG_binding_2	PF08823.6	gi|330506036|ref|YP_004399694.1|	-	0.0015	18.6	0.0	0.0023	17.9	0.0	1.3	1	0	0	1	1	1	1	Putative	peptidoglycan	binding	domain
TCP	PF03634.8	gi|330506036|ref|YP_004399694.1|	-	0.059	13.7	0.0	0.062	13.6	0.0	1.1	1	0	0	1	1	1	0	TCP	family	transcription	factor
Recombinase	PF07508.8	gi|330506036|ref|YP_004399694.1|	-	0.081	13.1	0.0	0.087	13.0	0.0	1.1	1	0	0	1	1	1	0	Recombinase
Cast	PF10174.4	gi|330506037|ref|YP_004399695.1|	-	0.038	12.0	0.3	0.053	11.5	0.2	1.1	1	0	0	1	1	1	0	RIM-binding	protein	of	the	cytomatrix	active	zone
ATP-synt_DE	PF00401.15	gi|330506037|ref|YP_004399695.1|	-	0.067	13.0	3.5	0.15	11.9	2.5	1.6	1	0	0	1	1	1	0	ATP	synthase,	Delta/Epsilon	chain,	long	alpha-helix	domain
DUF2580	PF10824.3	gi|330506037|ref|YP_004399695.1|	-	0.069	13.5	0.5	0.15	12.3	0.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2580)
Mnd1	PF03962.10	gi|330506038|ref|YP_004399696.1|	-	0.00048	19.8	2.8	0.00066	19.3	2.0	1.2	1	0	0	1	1	1	1	Mnd1	family
DUF3450	PF11932.3	gi|330506038|ref|YP_004399696.1|	-	0.00049	19.4	5.9	0.00058	19.1	4.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
APG6	PF04111.7	gi|330506038|ref|YP_004399696.1|	-	0.00099	18.2	7.0	0.0012	17.9	4.9	1.1	1	0	0	1	1	1	1	Autophagy	protein	Apg6
CENP-F_leu_zip	PF10473.4	gi|330506038|ref|YP_004399696.1|	-	0.0029	17.4	9.2	0.0077	16.0	5.1	2.0	1	1	1	2	2	2	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
WEMBL	PF05701.6	gi|330506038|ref|YP_004399696.1|	-	0.0034	15.9	7.6	0.0052	15.2	4.9	1.3	1	1	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
Myosin_tail_1	PF01576.14	gi|330506038|ref|YP_004399696.1|	-	0.0038	15.0	12.1	0.0043	14.8	8.4	1.1	1	0	0	1	1	1	1	Myosin	tail
HALZ	PF02183.13	gi|330506038|ref|YP_004399696.1|	-	0.004	16.8	3.1	0.014	15.1	1.6	2.3	2	1	0	2	2	2	1	Homeobox	associated	leucine	zipper
TMF_TATA_bd	PF12325.3	gi|330506038|ref|YP_004399696.1|	-	0.012	15.3	8.1	0.017	14.8	0.8	2.2	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
Bap31	PF05529.7	gi|330506038|ref|YP_004399696.1|	-	0.016	14.6	6.8	0.17	11.2	2.9	2.1	1	1	1	2	2	2	0	B-cell	receptor-associated	protein	31-like
Seryl_tRNA_N	PF02403.17	gi|330506038|ref|YP_004399696.1|	-	0.026	14.5	9.2	0.32	11.0	6.4	2.3	1	1	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
Orthopox_A5L	PF06193.6	gi|330506038|ref|YP_004399696.1|	-	0.038	13.9	2.2	0.046	13.6	1.5	1.3	1	0	0	1	1	1	0	Orthopoxvirus	A5L	protein-like
Atg14	PF10186.4	gi|330506038|ref|YP_004399696.1|	-	0.038	12.9	9.7	0.052	12.4	6.7	1.3	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF4618	PF15397.1	gi|330506038|ref|YP_004399696.1|	-	0.069	12.4	5.1	0.54	9.5	2.4	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4618)
CorA	PF01544.13	gi|330506038|ref|YP_004399696.1|	-	0.098	11.6	8.8	0.15	11.1	6.1	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
TMEM192	PF14802.1	gi|330506038|ref|YP_004399696.1|	-	0.1	11.4	0.8	0.16	10.7	0.6	1.3	1	0	0	1	1	1	0	TMEM192	family
ALIX_LYPXL_bnd	PF13949.1	gi|330506038|ref|YP_004399696.1|	-	0.1	11.5	10.8	0.49	9.2	7.5	1.9	1	1	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
RHH_1	PF01402.16	gi|330506038|ref|YP_004399696.1|	-	0.11	12.4	0.1	0.11	12.4	0.1	3.0	4	0	0	4	4	3	0	Ribbon-helix-helix	protein,	copG	family
TPR_MLP1_2	PF07926.7	gi|330506038|ref|YP_004399696.1|	-	0.14	11.9	10.9	0.39	10.4	0.8	2.3	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
zf-C4H2	PF10146.4	gi|330506038|ref|YP_004399696.1|	-	0.24	11.3	2.6	0.31	11.0	1.8	1.3	1	0	0	1	1	1	0	Zinc	finger-containing	protein
PRP1_N	PF06424.7	gi|330506038|ref|YP_004399696.1|	-	0.25	11.6	7.7	0.24	11.7	4.3	1.9	1	1	1	2	2	2	0	PRP1	splicing	factor,	N-terminal
DUF1664	PF07889.7	gi|330506038|ref|YP_004399696.1|	-	0.28	11.0	3.8	3.9	7.2	0.1	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Phage_GPO	PF05929.6	gi|330506038|ref|YP_004399696.1|	-	0.38	9.9	2.7	0.47	9.6	1.9	1.3	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
DUF4200	PF13863.1	gi|330506038|ref|YP_004399696.1|	-	0.41	10.6	10.9	1.1	9.2	6.3	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
DUF1319	PF07028.6	gi|330506038|ref|YP_004399696.1|	-	0.42	10.8	6.5	0.92	9.7	2.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1319)
IncA	PF04156.9	gi|330506038|ref|YP_004399696.1|	-	0.46	10.0	12.2	0.6	9.6	8.5	1.3	1	0	0	1	1	1	0	IncA	protein
Cep57_CLD_2	PF14197.1	gi|330506038|ref|YP_004399696.1|	-	0.83	9.6	12.4	49	3.9	7.9	2.9	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	PPC89
DUF342	PF03961.8	gi|330506038|ref|YP_004399696.1|	-	1.1	7.5	7.7	2.6	6.3	5.4	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
TBPIP	PF07106.8	gi|330506038|ref|YP_004399696.1|	-	1.3	8.5	9.2	3.5	7.1	4.7	2.2	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
V_ATPase_I	PF01496.14	gi|330506038|ref|YP_004399696.1|	-	1.8	6.2	4.4	1.8	6.2	3.0	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF972	PF06156.8	gi|330506038|ref|YP_004399696.1|	-	2	8.8	5.9	6	7.2	4.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
Kinetocho_Slk19	PF12709.2	gi|330506038|ref|YP_004399696.1|	-	2.1	8.4	7.4	9.7	6.3	4.4	2.7	1	1	0	1	1	1	0	Central	kinetochore-associated
DUF4140	PF13600.1	gi|330506038|ref|YP_004399696.1|	-	3.4	8.1	8.6	25	5.3	3.7	2.4	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
V-SNARE	PF05008.10	gi|330506038|ref|YP_004399696.1|	-	3.6	7.8	9.4	39	4.4	6.5	2.8	1	1	0	1	1	1	0	Vesicle	transport	v-SNARE	protein	N-terminus
DivIC	PF04977.10	gi|330506038|ref|YP_004399696.1|	-	3.8	7.0	8.9	2.1	7.8	3.4	2.6	1	1	1	2	2	2	0	Septum	formation	initiator
DUF2968	PF11180.3	gi|330506038|ref|YP_004399696.1|	-	4.1	6.7	11.6	4.3	6.6	6.3	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
Mei5	PF10376.4	gi|330506039|ref|YP_004399697.1|	-	0.00083	18.9	0.5	0.001	18.6	0.3	1.1	1	0	0	1	1	1	1	Double-strand	recombination	repair	protein
TMF_TATA_bd	PF12325.3	gi|330506039|ref|YP_004399697.1|	-	0.002	17.8	2.4	0.0027	17.4	1.7	1.2	1	0	0	1	1	1	1	TATA	element	modulatory	factor	1	TATA	binding
CENP-H	PF05837.7	gi|330506039|ref|YP_004399697.1|	-	0.0048	17.0	3.0	0.0076	16.4	2.1	1.3	1	0	0	1	1	1	1	Centromere	protein	H	(CENP-H)
COMP	PF11598.3	gi|330506039|ref|YP_004399697.1|	-	0.02	14.9	1.5	0.037	14.1	0.1	1.9	2	0	0	2	2	2	0	Cartilage	oligomeric	matrix	protein
DUF4201	PF13870.1	gi|330506039|ref|YP_004399697.1|	-	0.021	14.2	2.6	0.022	14.2	1.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
DUF2972	PF11186.3	gi|330506039|ref|YP_004399697.1|	-	0.049	13.5	0.1	0.06	13.2	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2972)
DivIC	PF04977.10	gi|330506039|ref|YP_004399697.1|	-	0.077	12.4	1.6	0.14	11.6	1.1	1.5	1	0	0	1	1	1	0	Septum	formation	initiator
ADIP	PF11559.3	gi|330506039|ref|YP_004399697.1|	-	0.1	12.5	5.2	0.15	12.0	3.6	1.2	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Bap31	PF05529.7	gi|330506039|ref|YP_004399697.1|	-	0.1	12.0	0.8	0.14	11.6	0.1	1.6	2	0	0	2	2	2	0	B-cell	receptor-associated	protein	31-like
DivIVA	PF05103.8	gi|330506039|ref|YP_004399697.1|	-	0.11	12.5	3.3	0.15	12.1	2.3	1.2	1	0	0	1	1	1	0	DivIVA	protein
Mnd1	PF03962.10	gi|330506039|ref|YP_004399697.1|	-	0.18	11.4	3.4	0.24	11.0	2.4	1.1	1	0	0	1	1	1	0	Mnd1	family
Atg14	PF10186.4	gi|330506039|ref|YP_004399697.1|	-	0.22	10.4	5.8	0.32	9.8	4.0	1.3	1	1	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF4140	PF13600.1	gi|330506039|ref|YP_004399697.1|	-	0.39	11.1	2.8	0.43	11.0	1.3	1.5	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
TMF_DNA_bd	PF12329.3	gi|330506039|ref|YP_004399697.1|	-	6.7	6.5	10.0	2	8.3	4.6	1.8	2	1	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
TrmB	PF01978.14	gi|330506040|ref|YP_004399698.1|	-	2.9e-07	30.0	0.1	4e-07	29.6	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|330506040|ref|YP_004399698.1|	-	1.6e-06	27.7	0.0	2.2e-06	27.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|330506040|ref|YP_004399698.1|	-	3e-06	26.5	0.0	4.4e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|330506040|ref|YP_004399698.1|	-	3.3e-06	26.7	0.0	4.5e-06	26.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.9	gi|330506040|ref|YP_004399698.1|	-	0.0056	16.4	0.0	0.009	15.7	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
PaaX	PF07848.7	gi|330506040|ref|YP_004399698.1|	-	0.0069	16.3	0.0	0.011	15.7	0.0	1.3	1	0	0	1	1	1	1	PaaX-like	protein
HTH_11	PF08279.7	gi|330506040|ref|YP_004399698.1|	-	0.024	14.2	0.0	0.041	13.5	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_27	PF13463.1	gi|330506040|ref|YP_004399698.1|	-	0.031	14.6	0.0	0.044	14.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_41	PF14502.1	gi|330506040|ref|YP_004399698.1|	-	0.043	13.4	0.0	0.07	12.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF387	PF04079.11	gi|330506040|ref|YP_004399698.1|	-	0.053	12.8	0.0	0.064	12.6	0.0	1.2	1	0	0	1	1	1	0	Putative	transcriptional	regulators	(Ypuh-like)
HTH_IclR	PF09339.5	gi|330506040|ref|YP_004399698.1|	-	0.07	12.7	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_34	PF13601.1	gi|330506040|ref|YP_004399698.1|	-	0.099	12.6	0.0	0.13	12.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
IF2_N	PF04760.10	gi|330506040|ref|YP_004399698.1|	-	0.099	12.3	0.0	0.19	11.3	0.0	1.4	1	0	0	1	1	1	0	Translation	initiation	factor	IF-2,	N-terminal	region
DUF3489	PF11994.3	gi|330506040|ref|YP_004399698.1|	-	0.11	12.5	0.0	0.15	11.9	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3489)
MarR	PF01047.17	gi|330506042|ref|YP_004399700.1|	-	0.00098	18.7	0.2	0.11	12.1	0.0	2.8	3	0	0	3	3	3	1	MarR	family
HTH_38	PF13936.1	gi|330506042|ref|YP_004399700.1|	-	0.0015	18.0	0.2	0.0061	16.0	0.1	2.1	1	1	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|330506042|ref|YP_004399700.1|	-	0.0025	17.4	0.0	0.0077	15.8	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|330506042|ref|YP_004399700.1|	-	0.0072	15.6	0.3	0.022	14.1	0.0	2.0	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
CENP-B_N	PF04218.8	gi|330506042|ref|YP_004399700.1|	-	0.032	13.6	0.0	0.087	12.2	0.0	1.8	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
DUF3722	PF12519.3	gi|330506042|ref|YP_004399700.1|	-	0.038	13.2	0.1	0.048	12.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3722)
TrmB	PF01978.14	gi|330506042|ref|YP_004399700.1|	-	0.074	12.7	0.0	0.2	11.3	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|330506042|ref|YP_004399700.1|	-	0.11	12.3	0.0	0.36	10.6	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF892	PF05974.7	gi|330506043|ref|YP_004399701.1|	-	0.015	15.1	0.5	0.23	11.2	0.0	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF892)
Vps16_C	PF04840.7	gi|330506043|ref|YP_004399701.1|	-	0.035	13.0	0.0	0.048	12.6	0.0	1.2	1	0	0	1	1	1	0	Vps16,	C-terminal	region
Seryl_tRNA_N	PF02403.17	gi|330506043|ref|YP_004399701.1|	-	0.051	13.6	0.1	0.18	11.8	0.0	1.8	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF2205	PF10224.4	gi|330506043|ref|YP_004399701.1|	-	0.054	13.0	0.1	0.054	13.0	0.1	2.0	3	0	0	3	3	3	0	Predicted	coiled-coil	protein	(DUF2205)
BLOC1_2	PF10046.4	gi|330506043|ref|YP_004399701.1|	-	0.17	12.0	1.6	2	8.6	0.4	2.2	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
FlaC_arch	PF05377.6	gi|330506043|ref|YP_004399701.1|	-	0.47	10.3	1.9	17	5.4	0.5	3.1	2	1	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF4164	PF13747.1	gi|330506043|ref|YP_004399701.1|	-	2.9	8.0	6.4	0.58	10.3	0.9	2.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4164)
DUF3213	PF11491.3	gi|330506045|ref|YP_004399703.1|	-	0.22	11.4	1.4	0.48	10.3	0.9	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3213)
VirE	PF05272.6	gi|330506047|ref|YP_004399705.1|	-	0.0021	17.5	0.1	0.003	17.0	0.1	1.2	1	0	0	1	1	1	1	Virulence-associated	protein	E
tRNA-synt_1g	PF09334.6	gi|330506049|ref|YP_004399707.1|	-	5.7e-38	130.5	0.0	6.4e-38	130.4	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
Rpr2	PF04032.11	gi|330506049|ref|YP_004399707.1|	-	0.01	15.6	0.3	1.2	8.9	0.0	2.4	2	0	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DZR	PF12773.2	gi|330506049|ref|YP_004399707.1|	-	0.024	14.4	9.9	0.24	11.2	6.8	2.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|330506049|ref|YP_004399707.1|	-	0.12	11.8	15.1	0.21	11.0	4.8	2.8	2	1	0	2	2	2	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.1	gi|330506049|ref|YP_004399707.1|	-	0.87	9.3	4.6	1.1	8.9	0.2	2.5	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
BIR	PF00653.16	gi|330506049|ref|YP_004399707.1|	-	1.4	9.3	4.3	0.97	9.8	1.0	2.2	1	1	1	2	2	2	0	Inhibitor	of	Apoptosis	domain
zf-H2C2_2	PF13465.1	gi|330506049|ref|YP_004399707.1|	-	2.7	8.4	5.5	15	6.0	0.2	3.4	3	0	0	3	3	3	0	Zinc-finger	double	domain
UPF0547	PF10571.4	gi|330506049|ref|YP_004399707.1|	-	7.5	6.3	7.9	1.4	8.6	1.9	2.4	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
HypA	PF01155.14	gi|330506049|ref|YP_004399707.1|	-	8.5	6.1	6.1	10	5.8	0.8	2.2	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family