# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Peptidase_S8 PF00082.17 gi|330506320|ref|YP_004382748.1| - 3.3e-30 105.1 1.5 5e-30 104.6 1.0 1.3 1 0 0 1 1 1 1 Subtilase family Transposase_mut PF00872.13 gi|330506321|ref|YP_004382749.1| - 8.8e-102 340.4 0.1 1.1e-101 340.1 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|330506321|ref|YP_004382749.1| - 6.8e-13 48.6 0.0 1.5e-12 47.5 0.0 1.6 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.12 gi|330506321|ref|YP_004382749.1| - 0.00084 18.9 0.2 0.0021 17.7 0.1 1.7 1 1 0 1 1 1 1 Transposase DDE_Tnp_IS240 PF13610.1 gi|330506321|ref|YP_004382749.1| - 0.049 13.6 0.0 0.12 12.3 0.0 1.9 1 1 0 1 1 1 0 DDE domain HTH_26 PF13443.1 gi|330506321|ref|YP_004382749.1| - 0.069 13.3 0.1 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_12 PF08461.5 gi|330506321|ref|YP_004382749.1| - 0.082 12.6 0.8 0.39 10.4 0.0 2.5 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain Peptidase_S8 PF00082.17 gi|330506322|ref|YP_004382750.1| - 1.7e-30 106.1 0.7 3e-30 105.3 0.5 1.4 1 0 0 1 1 1 1 Subtilase family fn3 PF00041.16 gi|330506322|ref|YP_004382750.1| - 0.00034 20.6 0.8 0.00098 19.2 0.2 2.0 2 0 0 2 2 2 1 Fibronectin type III domain EF-hand_6 PF13405.1 gi|330506322|ref|YP_004382750.1| - 1.4 9.0 3.5 11 6.2 0.0 3.2 3 0 0 3 3 3 0 EF-hand domain Peptidase_S9 PF00326.16 gi|330506323|ref|YP_004382751.1| - 7.4e-46 156.0 0.0 1e-45 155.5 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|330506323|ref|YP_004382751.1| - 1.9e-14 53.6 0.0 3.2e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|330506323|ref|YP_004382751.1| - 2.5e-12 47.1 0.0 6.2e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|330506323|ref|YP_004382751.1| - 6.3e-12 45.4 0.0 6.5e-09 35.6 0.0 2.2 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|330506323|ref|YP_004382751.1| - 1.8e-08 33.9 0.0 2.6e-06 26.8 0.0 2.3 2 0 0 2 2 2 1 Dienelactone hydrolase family BAAT_C PF08840.6 gi|330506323|ref|YP_004382751.1| - 0.00032 20.4 0.0 0.0011 18.7 0.0 1.8 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.8 gi|330506323|ref|YP_004382751.1| - 0.00045 19.8 0.0 0.001 18.7 0.0 1.6 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhoPQ_related PF10142.4 gi|330506323|ref|YP_004382751.1| - 0.0025 16.3 0.0 0.0037 15.7 0.0 1.2 1 0 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein LIP PF03583.9 gi|330506323|ref|YP_004382751.1| - 0.0062 15.7 0.1 0.04 13.1 0.1 2.0 2 0 0 2 2 2 1 Secretory lipase Abhydrolase_1 PF00561.15 gi|330506323|ref|YP_004382751.1| - 0.0081 15.7 0.1 1.1 8.7 0.0 2.3 1 1 0 2 2 2 1 alpha/beta hydrolase fold AXE1 PF05448.7 gi|330506323|ref|YP_004382751.1| - 0.0095 14.4 0.1 0.088 11.2 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Esterase PF00756.15 gi|330506323|ref|YP_004382751.1| - 0.03 13.7 0.0 0.052 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Hydrolase_4 PF12146.3 gi|330506323|ref|YP_004382751.1| - 0.086 12.7 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Putative lysophospholipase TRAM1 PF08390.6 gi|330506324|ref|YP_004382752.1| - 0.013 15.0 0.1 0.017 14.5 0.1 1.6 1 1 0 1 1 1 0 TRAM1-like protein TPR_1 PF00515.23 gi|330506325|ref|YP_004382753.1| - 8.3e-42 139.1 9.4 6e-06 25.6 0.0 8.3 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330506325|ref|YP_004382753.1| - 1.3e-41 140.0 14.0 7.7e-12 44.6 0.0 5.0 2 1 2 5 5 5 5 TPR repeat TPR_16 PF13432.1 gi|330506325|ref|YP_004382753.1| - 9.3e-38 128.1 16.2 5.6e-11 42.8 0.0 4.9 2 2 4 6 6 6 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330506325|ref|YP_004382753.1| - 6.6e-37 122.6 10.9 2.2e-06 27.4 0.2 7.2 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330506325|ref|YP_004382753.1| - 1e-35 118.7 11.9 4.8e-05 22.9 0.0 8.4 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330506325|ref|YP_004382753.1| - 7.2e-28 96.3 17.2 2.7e-06 27.2 0.1 5.2 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330506325|ref|YP_004382753.1| - 1.2e-27 93.8 11.8 4.1e-06 26.9 0.1 7.6 3 2 5 8 8 8 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330506325|ref|YP_004382753.1| - 1.5e-27 93.2 10.8 6.4e-05 22.4 0.0 8.7 6 3 2 8 8 8 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330506325|ref|YP_004382753.1| - 1.5e-25 89.3 8.7 6.5e-08 32.8 0.2 4.9 3 1 2 5 5 5 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|330506325|ref|YP_004382753.1| - 2.5e-19 69.1 1.5 4.6e-06 26.6 0.1 4.0 1 1 4 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|330506325|ref|YP_004382753.1| - 2.7e-18 65.6 3.7 7.5e-06 25.7 0.2 4.3 2 2 1 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330506325|ref|YP_004382753.1| - 2.7e-15 55.7 9.5 0.072 13.5 0.0 8.3 8 1 0 8 8 8 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330506325|ref|YP_004382753.1| - 1.2e-11 44.3 1.8 0.0074 16.1 0.0 4.6 5 1 1 6 6 5 3 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.1 gi|330506325|ref|YP_004382753.1| - 5.1e-11 42.5 2.0 0.052 13.6 0.1 4.6 2 2 3 5 5 5 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|330506325|ref|YP_004382753.1| - 4.9e-10 38.7 1.5 0.0027 16.5 0.0 4.0 1 1 2 4 4 4 2 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|330506325|ref|YP_004382753.1| - 1.5e-08 34.6 8.0 0.4 10.5 0.0 6.2 1 1 3 5 5 5 2 Domain of Unknown Function (DUF3856) TPR_4 PF07721.9 gi|330506325|ref|YP_004382753.1| - 2.1e-08 33.8 2.0 0.016 15.5 0.0 6.0 6 0 0 6 6 5 1 Tetratricopeptide repeat BTAD PF03704.12 gi|330506325|ref|YP_004382753.1| - 1e-07 32.3 5.6 5e-05 23.6 1.6 3.3 2 1 1 3 3 3 1 Bacterial transcriptional activator domain TPR_7 PF13176.1 gi|330506325|ref|YP_004382753.1| - 1.8e-07 30.3 7.2 3.8 7.5 0.0 7.7 8 0 0 8 8 8 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330506325|ref|YP_004382753.1| - 4.3e-06 26.4 9.2 4.2 7.4 0.1 6.2 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|330506325|ref|YP_004382753.1| - 7.7e-06 25.9 8.3 0.0099 15.8 3.5 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat ChAPs PF09295.5 gi|330506325|ref|YP_004382753.1| - 0.00012 21.0 0.3 0.01 14.6 0.0 2.5 1 1 1 3 3 3 1 ChAPs (Chs5p-Arf1p-binding proteins) Alkyl_sulf_dimr PF14863.1 gi|330506325|ref|YP_004382753.1| - 0.00019 21.6 6.5 1.1 9.5 0.0 4.5 2 1 2 5 5 5 1 Alkyl sulfatase dimerisation TPR_5 PF12688.2 gi|330506325|ref|YP_004382753.1| - 0.0002 21.3 0.6 0.43 10.6 0.1 3.0 1 1 2 3 3 3 2 Tetratrico peptide repeat TPR_3 PF07720.7 gi|330506325|ref|YP_004382753.1| - 0.0016 18.1 1.3 39 4.1 0.0 4.7 5 0 0 5 5 4 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|330506325|ref|YP_004382753.1| - 0.0076 15.6 2.1 0.61 9.4 0.0 3.7 2 1 2 4 4 3 1 26S proteasome subunit RPN7 YfiO PF13525.1 gi|330506325|ref|YP_004382753.1| - 0.017 14.6 2.8 5 6.5 0.0 3.6 1 1 0 2 2 2 0 Outer membrane lipoprotein DUF2225 PF09986.4 gi|330506325|ref|YP_004382753.1| - 0.018 14.5 2.8 0.16 11.4 0.0 3.1 2 2 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) Tn7_Tnp_TnsA_C PF08721.6 gi|330506325|ref|YP_004382753.1| - 0.061 13.3 0.0 0.21 11.6 0.0 1.9 2 0 0 2 2 1 0 TnsA endonuclease C terminal Apc5 PF12862.2 gi|330506325|ref|YP_004382753.1| - 0.082 12.7 0.5 43 4.0 0.0 3.9 3 1 2 5 5 4 0 Anaphase-promoting complex subunit 5 MIT PF04212.13 gi|330506325|ref|YP_004382753.1| - 3.1 7.7 14.4 16 5.4 0.1 5.8 5 2 2 7 7 6 0 MIT (microtubule interacting and transport) domain LVIVD PF08309.6 gi|330506326|ref|YP_004382754.1| - 3.4e-47 157.1 13.3 2.6e-14 51.9 0.4 7.0 6 1 0 6 6 6 6 LVIVD repeat Beta_propel PF09826.4 gi|330506326|ref|YP_004382754.1| - 7.4e-06 24.5 0.0 0.55 8.5 0.0 3.8 2 2 1 3 3 3 2 Beta propeller domain PQQ_3 PF13570.1 gi|330506326|ref|YP_004382754.1| - 0.13 12.5 10.7 16 5.9 0.0 5.2 6 0 0 6 6 6 0 PQQ-like domain Abhydrolase_6 PF12697.2 gi|330506327|ref|YP_004382755.1| - 2.5e-07 30.7 0.0 8.7e-07 29.0 0.0 1.8 2 1 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|330506327|ref|YP_004382755.1| - 2e-05 24.3 0.0 0.00016 21.4 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|330506327|ref|YP_004382755.1| - 0.00062 19.0 0.1 0.0013 18.0 0.1 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family PPR_2 PF13041.1 gi|330506327|ref|YP_004382755.1| - 0.04 13.9 0.1 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 PPR repeat family Tautomerase_2 PF14552.1 gi|330506327|ref|YP_004382755.1| - 0.098 12.6 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 Tautomerase enzyme DUF3503 PF12011.3 gi|330506328|ref|YP_004382756.1| - 0.13 12.0 0.1 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3503) DUF362 PF04015.7 gi|330506329|ref|YP_004382757.1| - 2e-29 102.5 0.2 6.1e-25 87.9 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|330506329|ref|YP_004382757.1| - 8.5e-14 50.4 9.0 6.8e-07 28.6 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330506329|ref|YP_004382757.1| - 3.8e-11 42.3 9.0 7.9e-06 25.5 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330506329|ref|YP_004382757.1| - 4.6e-10 39.6 29.8 4.7e-07 29.9 7.8 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330506329|ref|YP_004382757.1| - 1.6e-09 37.9 10.6 2.9e-09 37.1 7.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330506329|ref|YP_004382757.1| - 1.3e-08 34.2 11.2 0.00031 20.4 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330506329|ref|YP_004382757.1| - 2.1e-08 33.7 9.8 3.9e-08 32.9 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330506329|ref|YP_004382757.1| - 1.4e-07 32.1 6.8 0.0031 18.2 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|330506329|ref|YP_004382757.1| - 1.6e-05 24.8 11.9 0.023 14.9 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330506329|ref|YP_004382757.1| - 1.7e-05 24.5 10.1 8.5e-05 22.3 7.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330506329|ref|YP_004382757.1| - 0.00045 20.5 12.1 0.012 15.8 1.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330506329|ref|YP_004382757.1| - 0.0012 18.8 10.5 0.069 13.1 0.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330506329|ref|YP_004382757.1| - 0.015 15.8 12.1 0.067 13.7 0.5 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|330506329|ref|YP_004382757.1| - 0.031 14.1 2.5 0.058 13.2 1.8 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330506329|ref|YP_004382757.1| - 0.053 13.9 13.4 0.062 13.7 1.4 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330506329|ref|YP_004382757.1| - 0.063 13.8 19.9 0.79 10.4 3.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330506329|ref|YP_004382757.1| - 0.11 12.9 7.6 1.9 8.9 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain FMN_red PF03358.10 gi|330506330|ref|YP_004382758.1| - 9.7e-28 96.5 0.0 1.2e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|330506330|ref|YP_004382758.1| - 9.9e-11 41.5 0.0 1.1e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold HAD PF12710.2 gi|330506331|ref|YP_004382759.1| - 7.8e-17 62.0 0.5 1.5e-16 61.1 0.2 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase ACT PF01842.20 gi|330506331|ref|YP_004382759.1| - 2.2e-13 49.3 2.1 1.3e-07 30.9 0.1 2.7 3 0 0 3 3 3 2 ACT domain Hydrolase_3 PF08282.7 gi|330506331|ref|YP_004382759.1| - 1.1e-10 41.5 0.3 4.7e-09 36.1 0.1 2.5 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|330506331|ref|YP_004382759.1| - 1.6e-10 41.7 1.8 5.2e-10 40.1 0.5 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase ACT_6 PF13740.1 gi|330506331|ref|YP_004382759.1| - 2e-10 40.2 0.0 2.8e-05 23.7 0.0 2.5 2 0 0 2 2 2 2 ACT domain HAD_2 PF13419.1 gi|330506331|ref|YP_004382759.1| - 7.6e-09 36.0 0.2 3.3e-08 33.9 0.1 2.1 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|330506331|ref|YP_004382759.1| - 3.8e-07 29.5 1.2 8.2e-05 21.8 0.0 2.8 3 0 0 3 3 3 2 Putative Phosphatase ACT_4 PF13291.1 gi|330506331|ref|YP_004382759.1| - 7.7e-07 29.3 0.3 0.01 16.1 0.0 2.7 2 0 0 2 2 2 2 ACT domain S6PP PF05116.8 gi|330506331|ref|YP_004382759.1| - 0.034 13.4 0.1 0.3 10.3 0.0 2.1 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase_like PF13242.1 gi|330506331|ref|YP_004382759.1| - 0.12 12.1 0.1 0.35 10.6 0.1 1.7 2 0 0 2 2 2 0 HAD-hyrolase-like UPF0150 PF03681.10 gi|330506332|ref|YP_004382760.1| - 3.4e-07 29.7 0.1 5.3e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) YHS PF04945.8 gi|330506333|ref|YP_004382761.1| - 2.1e-16 59.4 0.5 2.3e-16 59.3 0.3 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|330506333|ref|YP_004382761.1| - 0.0036 17.4 0.3 0.0057 16.7 0.2 1.4 1 0 0 1 1 1 1 Archaeal TRASH domain ATPase-cat_bd PF12156.3 gi|330506333|ref|YP_004382761.1| - 0.0089 16.5 0.1 0.0099 16.3 0.1 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase zf-FCS PF06467.9 gi|330506333|ref|YP_004382761.1| - 0.094 12.3 0.3 0.13 11.9 0.2 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif E1-E2_ATPase PF00122.15 gi|330506334|ref|YP_004382762.1| - 3.1e-58 196.5 3.9 3.4e-58 196.4 0.7 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|330506334|ref|YP_004382762.1| - 3.4e-48 164.8 2.3 2.7e-47 161.9 1.0 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|330506334|ref|YP_004382762.1| - 1.3e-28 98.9 0.7 7.2e-14 51.6 0.0 2.6 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|330506334|ref|YP_004382762.1| - 5.3e-13 49.5 0.0 1.1e-12 48.5 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|330506334|ref|YP_004382762.1| - 2.7e-05 23.8 0.9 0.018 14.6 0.2 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Mid2 PF04478.7 gi|330506334|ref|YP_004382762.1| - 0.095 12.1 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Mid2 like cell wall stress sensor AhpC-TSA PF00578.16 gi|330506334|ref|YP_004382762.1| - 0.15 11.7 0.0 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 AhpC/TSA family MafB19-deam PF14437.1 gi|330506334|ref|YP_004382762.1| - 0.36 10.4 1.2 13 5.3 0.1 2.4 2 0 0 2 2 2 0 MafB19-like deaminase FeThRed_B PF02943.10 gi|330506335|ref|YP_004382763.1| - 1.9e-24 85.4 0.1 2.9e-24 84.8 0.0 1.2 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.10 gi|330506335|ref|YP_004382763.1| - 0.033 13.6 0.8 0.074 12.5 0.5 1.6 1 0 0 1 1 1 0 RecR protein Rubredoxin PF00301.15 gi|330506335|ref|YP_004382763.1| - 0.35 10.7 8.8 47 3.9 6.1 2.8 1 1 0 1 1 1 0 Rubredoxin Glutaredoxin PF00462.19 gi|330506336|ref|YP_004382764.1| - 7.3e-11 41.8 0.0 1e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|330506336|ref|YP_004382764.1| - 0.00011 22.2 0.0 0.00015 21.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|330506336|ref|YP_004382764.1| - 0.0082 16.2 0.1 1.2 9.1 0.0 2.1 2 0 0 2 2 2 2 ArsC family Thioredoxin_2 PF13098.1 gi|330506336|ref|YP_004382764.1| - 0.02 15.1 0.1 0.037 14.2 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain GST_N_2 PF13409.1 gi|330506336|ref|YP_004382764.1| - 0.055 13.4 0.0 0.065 13.2 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DUF650 PF04894.7 gi|330506338|ref|YP_004382766.1| - 1.1e-84 284.1 0.0 1.5e-84 283.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|330506338|ref|YP_004382766.1| - 3.7e-35 119.8 0.0 6.1e-35 119.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Nuc_deoxyrib_tr PF05014.10 gi|330506339|ref|YP_004382767.1| - 0.0076 16.1 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase NAD_binding_5 PF07994.7 gi|330506340|ref|YP_004382768.1| - 1.6e-53 182.1 0.0 4.7e-53 180.6 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|330506340|ref|YP_004382768.1| - 5.5e-33 113.1 0.0 1e-32 112.2 0.0 1.5 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Cupin_2 PF07883.6 gi|330506341|ref|YP_004382769.1| - 3.9e-15 55.0 0.0 4.9e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|330506341|ref|YP_004382769.1| - 3.2e-06 26.8 0.1 4e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|330506341|ref|YP_004382769.1| - 4.6e-05 22.7 0.0 6.8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DUF1498 PF07385.7 gi|330506341|ref|YP_004382769.1| - 0.0004 19.6 0.0 0.00046 19.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1498) CENP-C_C PF11699.3 gi|330506341|ref|YP_004382769.1| - 0.0023 17.8 0.0 0.0028 17.5 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like DUF1637 PF07847.7 gi|330506341|ref|YP_004382769.1| - 0.0028 17.0 0.5 1 8.6 0.1 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1637) AraC_binding_2 PF14525.1 gi|330506341|ref|YP_004382769.1| - 0.041 13.4 0.1 0.047 13.2 0.1 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_1 PF00190.17 gi|330506341|ref|YP_004382769.1| - 0.054 12.9 0.0 0.073 12.5 0.0 1.2 1 0 0 1 1 1 0 Cupin Radical_SAM PF04055.16 gi|330506342|ref|YP_004382770.1| - 3.3e-08 33.8 0.0 8.2e-08 32.5 0.0 1.7 1 1 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.2 gi|330506342|ref|YP_004382770.1| - 7.4e-08 32.2 0.2 1e-06 28.5 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif Fer4_12 PF13353.1 gi|330506342|ref|YP_004382770.1| - 1.3e-05 25.3 0.1 2.1e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain HHH PF00633.18 gi|330506342|ref|YP_004382770.1| - 0.0028 17.2 0.0 0.0088 15.6 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|330506342|ref|YP_004382770.1| - 0.0047 17.0 0.0 0.022 14.9 0.0 2.1 3 0 0 3 3 3 1 Helix-hairpin-helix domain DUF4130 PF13566.1 gi|330506343|ref|YP_004382771.1| - 5e-20 71.7 0.2 1e-19 70.7 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4130 P_proprotein PF01483.15 gi|330506345|ref|YP_004382773.1| - 8e-31 105.6 0.0 6.5e-15 54.6 0.0 2.3 2 0 0 2 2 2 2 Proprotein convertase P-domain Peptidase_M6 PF05547.6 gi|330506345|ref|YP_004382773.1| - 0.00068 17.7 4.6 0.75 7.7 0.1 3.9 3 2 1 4 4 4 3 Immune inhibitor A peptidase M6 FKBP_C PF00254.23 gi|330506346|ref|YP_004382774.1| - 4.8e-24 84.1 0.1 6.3e-24 83.8 0.0 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Peptidase_M48 PF01435.13 gi|330506347|ref|YP_004382775.1| - 2e-41 142.0 0.3 3.6e-41 141.1 0.0 1.4 1 1 1 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|330506347|ref|YP_004382775.1| - 1.6e-07 30.5 0.5 1.6e-07 30.5 0.4 2.0 2 0 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|330506347|ref|YP_004382775.1| - 0.028 14.4 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily DUF4157 PF13699.1 gi|330506347|ref|YP_004382775.1| - 0.11 12.6 0.1 0.2 11.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Pex24p PF06398.6 gi|330506347|ref|YP_004382775.1| - 1.3 7.7 3.2 2.9 6.5 2.2 1.6 1 1 0 1 1 1 0 Integral peroxisomal membrane peroxin TauE PF01925.14 gi|330506349|ref|YP_004382777.1| - 1.3e-46 159.0 41.7 1.7e-46 158.6 28.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Lactamase_B PF00753.22 gi|330506350|ref|YP_004382778.1| - 1.1e-24 87.1 0.3 2.1e-24 86.2 0.1 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|330506350|ref|YP_004382778.1| - 0.00013 21.5 0.1 0.00021 20.9 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.20 gi|330506350|ref|YP_004382778.1| - 0.011 15.7 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin Flavodoxin_5 PF12724.2 gi|330506350|ref|YP_004382778.1| - 0.052 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Flavodoxin domain Rubredoxin PF00301.15 gi|330506351|ref|YP_004382779.1| - 7.9e-24 83.2 3.0 1.1e-23 82.8 2.1 1.2 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|330506351|ref|YP_004382779.1| - 0.00097 18.6 0.1 1.1 8.8 0.0 2.5 3 0 0 3 3 3 2 Sec23/Sec24 zinc finger TF_Zn_Ribbon PF08271.7 gi|330506351|ref|YP_004382779.1| - 0.0033 16.6 0.3 0.47 9.8 0.0 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding Elf1 PF05129.8 gi|330506351|ref|YP_004382779.1| - 0.02 14.5 0.3 3.2 7.5 0.0 2.2 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zinc_ribbon_2 PF13240.1 gi|330506351|ref|YP_004382779.1| - 0.024 14.1 1.6 0.34 10.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|330506351|ref|YP_004382779.1| - 0.028 13.6 1.6 0.049 12.8 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|330506351|ref|YP_004382779.1| - 0.044 14.1 1.0 3 8.3 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|330506351|ref|YP_004382779.1| - 0.046 14.0 2.8 1.6 9.1 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Desulfoferrod_N PF06397.7 gi|330506351|ref|YP_004382779.1| - 0.079 12.3 1.3 0.14 11.5 0.3 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-HIT PF04438.11 gi|330506351|ref|YP_004382779.1| - 0.082 12.5 3.2 5 6.8 0.9 2.3 2 0 0 2 2 2 0 HIT zinc finger Zn-ribbon_8 PF09723.5 gi|330506351|ref|YP_004382779.1| - 0.13 12.2 3.8 1.2 9.0 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|330506351|ref|YP_004382779.1| - 0.14 12.0 1.3 2 8.3 1.0 2.2 1 1 1 2 2 2 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|330506351|ref|YP_004382779.1| - 0.17 11.7 1.5 8 6.3 0.1 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF2296 PF10058.4 gi|330506351|ref|YP_004382779.1| - 0.19 11.4 1.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) UPF0547 PF10571.4 gi|330506351|ref|YP_004382779.1| - 0.31 10.7 3.5 6.7 6.4 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|330506351|ref|YP_004382779.1| - 0.31 11.1 2.3 3.5 7.8 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Ribosomal_L37ae PF01780.14 gi|330506351|ref|YP_004382779.1| - 0.44 10.4 2.6 2 8.3 0.5 2.1 2 0 0 2 2 2 0 Ribosomal L37ae protein family zf-RanBP PF00641.13 gi|330506351|ref|YP_004382779.1| - 7.8 5.7 8.1 0.38 9.9 0.5 2.3 3 0 0 3 3 3 0 Zn-finger in Ran binding protein and others AAA_10 PF12846.2 gi|330506353|ref|YP_004382781.1| - 1.1e-18 67.7 0.0 5.4e-18 65.4 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|330506353|ref|YP_004382781.1| - 7.7e-08 31.1 0.0 0.00017 20.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.12 gi|330506353|ref|YP_004382781.1| - 5e-07 29.7 0.0 5e-07 29.7 0.0 3.3 3 2 0 3 3 3 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|330506353|ref|YP_004382781.1| - 0.00027 19.6 0.1 0.0055 15.3 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|330506353|ref|YP_004382781.1| - 0.0019 17.6 0.0 0.8 9.1 0.0 2.3 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|330506353|ref|YP_004382781.1| - 0.013 15.0 1.5 0.015 14.7 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family ResIII PF04851.10 gi|330506353|ref|YP_004382781.1| - 0.074 12.8 0.8 0.3 10.8 0.0 2.2 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit AAA_23 PF13476.1 gi|330506353|ref|YP_004382781.1| - 0.76 10.0 9.2 0.56 10.4 1.8 2.3 2 0 0 2 2 2 0 AAA domain Spc24 PF08286.6 gi|330506353|ref|YP_004382781.1| - 2.1 8.0 11.0 0.85 9.3 1.4 2.5 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Kinetocho_Slk19 PF12709.2 gi|330506353|ref|YP_004382781.1| - 4.3 7.4 9.1 4.7 7.3 1.1 2.4 2 0 0 2 2 2 0 Central kinetochore-associated IFT57 PF10498.4 gi|330506353|ref|YP_004382781.1| - 8.8 4.9 10.0 0.24 10.0 1.9 1.9 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DDE_Tnp_1 PF01609.16 gi|330506354|ref|YP_004382782.1| - 4.8e-07 29.5 0.1 6.9e-07 29.0 0.0 1.4 1 1 0 1 1 1 1 Transposase DDE domain AT_hook PF02178.14 gi|330506354|ref|YP_004382782.1| - 0.015 14.9 0.3 0.037 13.7 0.2 1.6 1 0 0 1 1 1 0 AT hook motif DDE_Tnp_1 PF01609.16 gi|330506355|ref|YP_004382783.1| - 9.5e-23 80.8 0.0 1.4e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|330506355|ref|YP_004382783.1| - 0.0076 16.4 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|330506355|ref|YP_004382783.1| - 0.011 14.7 0.3 0.017 14.1 0.2 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DUF4277 PF14104.1 gi|330506356|ref|YP_004382784.1| - 2.5e-41 140.4 0.0 6.2e-41 139.1 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4277) MRP-L47 PF06984.8 gi|330506357|ref|YP_004382785.1| - 0.011 15.6 0.3 0.012 15.4 0.2 1.1 1 0 0 1 1 1 0 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) DUF4046 PF13255.1 gi|330506357|ref|YP_004382785.1| - 0.037 12.7 0.7 0.041 12.6 0.5 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF4046) CoA_binding_2 PF13380.1 gi|330506358|ref|YP_004382786.1| - 1.2e-05 25.3 0.0 4.3e-05 23.6 0.0 1.7 1 1 1 2 2 2 1 CoA binding domain DUF3039 PF11238.3 gi|330506361|ref|YP_004382789.1| - 0.018 14.4 0.3 0.02 14.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) Zn-ribbon_8 PF09723.5 gi|330506361|ref|YP_004382789.1| - 0.018 14.9 0.3 0.023 14.6 0.2 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|330506361|ref|YP_004382789.1| - 0.1 12.0 1.1 0.15 11.5 0.8 1.3 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger GATA PF00320.22 gi|330506361|ref|YP_004382789.1| - 0.11 11.8 0.9 0.19 11.1 0.6 1.5 1 1 0 1 1 1 0 GATA zinc finger YhfH PF14149.1 gi|330506361|ref|YP_004382789.1| - 1.1 9.0 3.8 0.66 9.8 1.5 1.5 1 1 0 1 1 1 0 YhfH-like protein Aldo_ket_red PF00248.16 gi|330506364|ref|YP_004382792.1| - 3.3e-19 68.7 0.0 5.6e-18 64.7 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family PIN PF01850.16 gi|330506367|ref|YP_004382795.1| - 8.4e-06 26.1 0.0 1.1e-05 25.7 0.0 1.2 1 0 0 1 1 1 1 PIN domain Oxidored_nitro PF00148.14 gi|330506368|ref|YP_004382796.1| - 2.1e-58 197.8 0.2 3.5e-58 197.1 0.2 1.3 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Abhydrolase_6 PF12697.2 gi|330506370|ref|YP_004382798.1| - 2.6e-33 115.8 0.1 3.2e-33 115.5 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|330506370|ref|YP_004382798.1| - 1.1e-25 90.6 0.0 1e-24 87.3 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|330506370|ref|YP_004382798.1| - 1.4e-13 50.7 0.0 2.3e-13 50.0 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|330506370|ref|YP_004382798.1| - 0.0023 17.4 0.0 0.0031 16.9 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.16 gi|330506370|ref|YP_004382798.1| - 0.0056 15.9 0.0 1.1 8.3 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Thioesterase PF00975.15 gi|330506370|ref|YP_004382798.1| - 0.011 15.9 0.1 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain Abhydrolase_3 PF07859.8 gi|330506370|ref|YP_004382798.1| - 0.018 14.6 0.0 0.047 13.2 0.0 1.7 1 1 0 1 1 1 0 alpha/beta hydrolase fold Ndr PF03096.9 gi|330506370|ref|YP_004382798.1| - 0.065 11.7 0.0 0.095 11.1 0.0 1.1 1 0 0 1 1 1 0 Ndr family AF0941-like PF14591.1 gi|330506371|ref|YP_004382799.1| - 0.083 12.9 2.0 0.092 12.8 1.4 1.1 1 0 0 1 1 1 0 AF0941-like Viral_P18 PF04521.8 gi|330506371|ref|YP_004382799.1| - 0.1 12.0 1.1 0.18 11.2 0.2 1.7 1 1 1 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Glyco_transf_36 PF06165.6 gi|330506374|ref|YP_004382802.1| - 1e-70 234.5 0.0 1.2e-34 118.4 0.0 2.5 2 0 0 2 2 2 2 Glycosyltransferase family 36 Glycoamylase PF10091.4 gi|330506374|ref|YP_004382802.1| - 8.9e-69 231.1 0.1 1.5e-68 230.3 0.1 1.4 1 0 0 1 1 1 1 Putative glucoamylase GT36_AF PF06205.6 gi|330506374|ref|YP_004382802.1| - 4.6e-56 186.5 0.1 4.1e-28 96.9 0.0 2.5 2 0 0 2 2 2 2 Glycosyltransferase 36 associated family CBM_X PF06204.6 gi|330506374|ref|YP_004382802.1| - 4.3e-40 135.0 1.5 6.7e-26 89.5 0.2 2.7 2 0 0 2 2 2 2 Putative carbohydrate binding domain DUF2025 PF09634.5 gi|330506374|ref|YP_004382802.1| - 0.085 12.6 0.2 1.7 8.4 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2025) Sm_multidrug_ex PF06695.6 gi|330506375|ref|YP_004382803.1| - 1.2e-37 128.7 2.8 1.6e-37 128.3 2.0 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein CitG PF01874.11 gi|330506378|ref|YP_004382806.1| - 1.4e-67 227.8 0.1 1.6e-67 227.6 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|330506379|ref|YP_004382807.1| - 2.4e-48 164.0 0.0 2.7e-48 163.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Rad51 PF08423.6 gi|330506380|ref|YP_004382808.1| - 3.4e-29 101.5 0.0 3.9e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|330506380|ref|YP_004382808.1| - 1.8e-14 53.6 0.0 2.4e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|330506380|ref|YP_004382808.1| - 4.1e-09 35.8 1.8 9.8e-08 31.3 1.3 2.2 1 1 0 1 1 1 1 KaiC RecA PF00154.16 gi|330506380|ref|YP_004382808.1| - 2e-08 33.7 0.1 2.1e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.7 gi|330506380|ref|YP_004382808.1| - 3.2e-06 26.7 0.0 4e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) CbiA PF01656.18 gi|330506380|ref|YP_004382808.1| - 1.6e-05 24.4 0.1 2.9e-05 23.5 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain TrwB_AAD_bind PF10412.4 gi|330506380|ref|YP_004382808.1| - 0.00017 20.3 0.0 0.00043 19.0 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.2 gi|330506380|ref|YP_004382808.1| - 0.00072 19.0 0.2 0.0064 15.9 0.0 2.0 1 1 0 2 2 2 1 AAA-like domain IstB_IS21 PF01695.12 gi|330506380|ref|YP_004382808.1| - 0.00082 18.8 0.0 0.0018 17.7 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|330506380|ref|YP_004382808.1| - 0.0059 16.8 0.0 0.0099 16.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|330506380|ref|YP_004382808.1| - 0.0069 16.5 0.0 0.017 15.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|330506380|ref|YP_004382808.1| - 0.011 15.3 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain Isochorismatase PF00857.15 gi|330506380|ref|YP_004382808.1| - 0.017 15.0 0.0 0.45 10.4 0.0 2.1 2 0 0 2 2 2 0 Isochorismatase family AAA_16 PF13191.1 gi|330506380|ref|YP_004382808.1| - 0.021 14.8 0.2 0.16 11.9 0.2 2.1 1 1 1 2 2 2 0 AAA ATPase domain DUF87 PF01935.12 gi|330506380|ref|YP_004382808.1| - 0.027 14.2 0.0 0.061 13.1 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function DUF87 DAP3 PF10236.4 gi|330506380|ref|YP_004382808.1| - 0.031 13.2 0.1 0.081 11.8 0.0 1.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_30 PF13604.1 gi|330506380|ref|YP_004382808.1| - 0.033 13.7 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|330506380|ref|YP_004382808.1| - 0.033 13.0 0.3 0.074 11.9 0.2 1.5 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain SRP54 PF00448.17 gi|330506380|ref|YP_004382808.1| - 0.035 13.5 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF815 PF05673.8 gi|330506380|ref|YP_004382808.1| - 0.05 12.5 0.0 0.092 11.6 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Glyco_transf_4 PF13439.1 gi|330506380|ref|YP_004382808.1| - 0.05 13.3 0.0 0.068 12.8 0.0 1.4 1 1 0 1 1 1 0 Glycosyltransferase Family 4 MipZ PF09140.6 gi|330506380|ref|YP_004382808.1| - 0.051 12.6 0.0 0.078 12.0 0.0 1.3 1 1 0 1 1 1 0 ATPase MipZ FtsK_SpoIIIE PF01580.13 gi|330506380|ref|YP_004382808.1| - 0.087 12.2 0.0 0.19 11.1 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_29 PF13555.1 gi|330506380|ref|YP_004382808.1| - 0.11 12.0 0.1 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|330506380|ref|YP_004382808.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|330506380|ref|YP_004382808.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Acetyltransf_1 PF00583.19 gi|330506381|ref|YP_004382809.1| - 2.1e-15 56.4 0.2 3.1e-15 55.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|330506381|ref|YP_004382809.1| - 4e-11 43.0 0.0 5.4e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|330506381|ref|YP_004382809.1| - 2.2e-09 37.3 0.1 3.2e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|330506381|ref|YP_004382809.1| - 3.8e-08 32.9 0.0 5.6e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|330506381|ref|YP_004382809.1| - 4.1e-06 26.6 0.0 1.3e-05 25.0 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|330506381|ref|YP_004382809.1| - 9.4e-05 22.3 0.0 0.00015 21.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|330506381|ref|YP_004382809.1| - 0.00023 21.1 0.0 0.00025 20.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|330506381|ref|YP_004382809.1| - 0.00079 19.6 0.1 0.0031 17.6 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|330506381|ref|YP_004382809.1| - 0.029 14.2 0.0 0.064 13.1 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF1016 PF06250.6 gi|330506383|ref|YP_004382811.1| - 4.3e-101 338.0 0.0 5.1e-101 337.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1016) Methylase_S PF01420.14 gi|330506384|ref|YP_004382812.1| - 1e-39 136.2 0.0 1.1e-21 77.4 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain SIR2_2 PF13289.1 gi|330506385|ref|YP_004382813.1| - 1.1e-15 57.8 0.0 5.7e-15 55.4 0.0 2.0 2 0 0 2 2 2 1 SIR2-like domain DUF87 PF01935.12 gi|330506386|ref|YP_004382814.1| - 4.6e-22 78.9 0.0 7.4e-22 78.2 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|330506386|ref|YP_004382814.1| - 8.7e-22 77.9 0.1 3.1e-13 49.8 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.4 gi|330506386|ref|YP_004382814.1| - 5.7e-09 35.0 0.1 2.8e-05 22.9 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|330506386|ref|YP_004382814.1| - 4.2e-07 28.7 0.1 0.00052 18.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|330506386|ref|YP_004382814.1| - 3.6e-05 23.3 0.0 0.0039 16.6 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|330506386|ref|YP_004382814.1| - 0.00027 21.0 0.0 1.2 9.3 0.0 2.9 2 1 1 3 3 3 2 AAA domain Zot PF05707.7 gi|330506386|ref|YP_004382814.1| - 0.00054 19.4 0.3 0.0019 17.7 0.0 1.9 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) ResIII PF04851.10 gi|330506386|ref|YP_004382814.1| - 0.00069 19.4 0.4 0.45 10.3 0.1 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|330506386|ref|YP_004382814.1| - 0.0034 16.9 0.0 0.092 12.2 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase ABC_tran PF00005.22 gi|330506386|ref|YP_004382814.1| - 0.088 13.1 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter DUF262 PF03235.9 gi|330506387|ref|YP_004382815.1| - 2e-32 112.9 0.1 4.2e-32 111.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|330506387|ref|YP_004382815.1| - 4.5e-28 97.8 0.4 8.2e-28 97.0 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) HSDR_N PF04313.9 gi|330506388|ref|YP_004382816.1| - 1.7e-28 99.7 1.6 3e-28 98.8 0.1 2.3 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|330506388|ref|YP_004382816.1| - 5.3e-15 55.7 1.3 1.2e-14 54.5 0.0 2.3 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit CPSase_L_D2 PF02786.12 gi|330506389|ref|YP_004382817.1| - 2.9e-95 317.5 1.6 4.3e-58 196.0 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|330506389|ref|YP_004382817.1| - 1e-47 160.7 0.0 1.1e-24 86.6 0.0 2.8 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|330506389|ref|YP_004382817.1| - 2.1e-41 141.7 0.1 4.7e-21 75.3 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330506389|ref|YP_004382817.1| - 5.9e-29 100.8 0.0 2e-06 26.7 0.0 4.5 5 0 0 5 5 5 4 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D3 PF02787.14 gi|330506389|ref|YP_004382817.1| - 8.8e-28 96.5 0.0 4e-27 94.4 0.0 2.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.17 gi|330506389|ref|YP_004382817.1| - 3.5e-24 84.5 0.1 4e-23 81.1 0.0 2.8 3 0 0 3 3 3 1 MGS-like domain ATP-grasp PF02222.17 gi|330506389|ref|YP_004382817.1| - 4.3e-23 81.5 0.2 1.6e-10 40.6 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|330506389|ref|YP_004382817.1| - 2.3e-14 53.2 0.3 5.3e-07 29.2 0.1 2.7 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|330506389|ref|YP_004382817.1| - 2.9e-09 37.0 0.2 0.00014 21.7 0.1 2.5 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|330506389|ref|YP_004382817.1| - 6.3e-08 32.4 0.3 0.018 14.6 0.0 3.0 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|330506389|ref|YP_004382817.1| - 1.4e-05 24.4 0.0 0.2 10.8 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|330506389|ref|YP_004382817.1| - 2.8e-05 23.5 0.0 0.051 12.9 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain DUF3820 PF12843.2 gi|330506389|ref|YP_004382817.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3820) Pyr_redox_2 PF07992.9 gi|330506389|ref|YP_004382817.1| - 0.12 12.1 0.0 21 4.9 0.0 3.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DDE_Tnp_1 PF01609.16 gi|330506390|ref|YP_004382818.1| - 1.4e-06 28.0 0.2 1.7e-06 27.7 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|330506390|ref|YP_004382818.1| - 1.2e-05 24.4 0.7 1.6e-05 24.0 0.5 1.1 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 rve PF00665.21 gi|330506391|ref|YP_004382819.1| - 1.4e-23 83.2 0.0 2.2e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330506391|ref|YP_004382819.1| - 1.6e-18 65.9 0.2 3.6e-18 64.8 0.2 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.1 gi|330506391|ref|YP_004382819.1| - 4.1e-17 61.9 0.3 1.5e-16 60.1 0.1 1.9 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.1 gi|330506391|ref|YP_004382819.1| - 3.9e-09 36.4 2.3 6.8e-09 35.6 1.1 1.8 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.1 gi|330506391|ref|YP_004382819.1| - 1.3e-06 28.4 0.4 2.1e-06 27.7 0.3 1.3 1 0 0 1 1 1 1 DDE domain HTH_Tnp_Tc3_2 PF01498.13 gi|330506391|ref|YP_004382819.1| - 0.14 12.2 0.4 0.44 10.6 0.0 1.9 2 0 0 2 2 2 0 Transposase HTH_Tnp_1 PF01527.15 gi|330506392|ref|YP_004382820.1| - 4.1e-11 42.6 0.1 6.4e-11 42.0 0.0 1.5 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|330506392|ref|YP_004382820.1| - 0.00067 19.2 0.0 0.0014 18.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330506392|ref|YP_004382820.1| - 0.0022 17.9 0.0 0.0044 16.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|330506392|ref|YP_004382820.1| - 0.0071 16.4 0.1 0.0091 16.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|330506392|ref|YP_004382820.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain GnsAB PF08178.6 gi|330506392|ref|YP_004382820.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 GnsA/GnsB family DDE_5 PF13546.1 gi|330506393|ref|YP_004382821.1| - 2.2e-12 46.4 0.0 7.2e-12 44.7 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_2 PF04693.7 gi|330506393|ref|YP_004382821.1| - 7.6e-07 28.4 0.3 3.6e-05 22.9 0.1 2.1 1 1 0 2 2 2 2 Archaeal putative transposase ISC1217 DUF2088 PF09861.4 gi|330506394|ref|YP_004382822.1| - 7.4e-44 149.2 0.0 1e-43 148.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|330506394|ref|YP_004382822.1| - 0.044 13.2 0.0 0.074 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF362) DUF58 PF01882.13 gi|330506395|ref|YP_004382823.1| - 6.4e-15 55.0 0.0 1.2e-14 54.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|330506395|ref|YP_004382823.1| - 0.00055 20.0 0.0 0.00096 19.2 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_3 PF07726.6 gi|330506396|ref|YP_004382824.1| - 8.5e-63 209.8 0.0 1.5e-62 208.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|330506396|ref|YP_004382824.1| - 1.4e-11 44.2 0.0 2.2e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|330506396|ref|YP_004382824.1| - 2.8e-06 26.3 0.0 2.4e-05 23.3 0.0 2.4 1 1 0 1 1 1 1 MCM2/3/5 family RuvB_N PF05496.7 gi|330506396|ref|YP_004382824.1| - 0.00054 19.0 0.3 0.0049 15.9 0.2 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|330506396|ref|YP_004382824.1| - 0.0011 19.2 0.0 0.003 17.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|330506396|ref|YP_004382824.1| - 0.002 17.3 0.1 0.2 10.7 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|330506396|ref|YP_004382824.1| - 0.012 15.0 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Spore_YtfJ PF09579.5 gi|330506397|ref|YP_004382825.1| - 6.4e-11 41.9 3.6 6.4e-11 41.9 2.5 1.6 2 0 0 2 2 2 1 Sporulation protein YtfJ (Spore_YtfJ) DUF2953 PF11167.3 gi|330506398|ref|YP_004382826.1| - 3.8e-08 33.0 0.0 7.7e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) DUF3417 PF11897.3 gi|330506399|ref|YP_004382827.1| - 4.9e-25 87.8 0.8 1e-24 86.7 0.5 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.15 gi|330506399|ref|YP_004382827.1| - 2.5e-22 78.5 0.0 3.7e-16 58.2 0.0 3.4 2 1 0 2 2 2 2 Carbohydrate phosphorylase UPF0150 PF03681.10 gi|330506400|ref|YP_004382828.1| - 3e-10 39.5 0.2 4.5e-10 39.0 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|330506400|ref|YP_004382828.1| - 0.019 15.0 0.0 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) Nuc_rec_co-act PF08815.5 gi|330506401|ref|YP_004382829.1| - 0.11 12.0 0.1 0.29 10.6 0.0 1.8 2 0 0 2 2 2 0 Nuclear receptor coactivator PIN PF01850.16 gi|330506402|ref|YP_004382830.1| - 8.5e-05 22.8 0.8 0.00012 22.4 0.5 1.3 1 0 0 1 1 1 1 PIN domain DUF2188 PF09954.4 gi|330506405|ref|YP_004382833.1| - 9.2e-11 41.4 0.1 1.1e-10 41.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2188) CbiG_mid PF11761.3 gi|330506405|ref|YP_004382833.1| - 0.049 13.8 0.0 0.06 13.5 0.0 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis central region SWIM PF04434.12 gi|330506406|ref|YP_004382834.1| - 2.8e-07 29.8 0.2 5.4e-07 28.9 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger SNF2_N PF00176.18 gi|330506407|ref|YP_004382835.1| - 2.6e-67 226.7 0.0 3.7e-67 226.2 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3670 PF12419.3 gi|330506407|ref|YP_004382835.1| - 2.1e-40 137.4 0.1 4.9e-40 136.2 0.1 1.7 1 0 0 1 1 1 1 SNF2 Helicase protein Helicase_C PF00271.26 gi|330506407|ref|YP_004382835.1| - 1.4e-16 60.0 0.0 3.7e-16 58.7 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|330506407|ref|YP_004382835.1| - 8.4e-06 25.3 0.0 2.2e-05 24.0 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Sulf_transp PF04143.9 gi|330506408|ref|YP_004382836.1| - 3e-06 27.1 13.5 3e-06 27.1 9.4 2.9 2 2 1 3 3 3 1 Sulphur transport Sulf_transp PF04143.9 gi|330506409|ref|YP_004382837.1| - 9.9e-12 44.7 9.6 9.9e-12 44.7 6.7 3.8 4 0 0 4 4 4 1 Sulphur transport DUF4341 PF14241.1 gi|330506409|ref|YP_004382837.1| - 1.6e-07 30.8 0.3 1.6e-07 30.8 0.2 3.0 2 1 0 2 2 2 1 Domain of unknown function (DUF4341) DUF46 PF01864.12 gi|330506409|ref|YP_004382837.1| - 0.0052 16.6 1.6 0.054 13.3 0.0 2.2 1 1 1 2 2 2 1 Putative integral membrane protein DUF46 DUF4199 PF13858.1 gi|330506409|ref|YP_004382837.1| - 0.043 13.7 0.1 0.043 13.7 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4199) XhlA PF10779.4 gi|330506409|ref|YP_004382837.1| - 0.69 9.8 0.0 0.69 9.8 0.0 2.6 3 0 0 3 3 3 0 Haemolysin XhlA Rhodanese PF00581.15 gi|330506410|ref|YP_004382838.1| - 3.6e-24 85.2 0.0 7.2e-15 55.3 0.0 2.4 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|330506410|ref|YP_004382838.1| - 3.6e-14 52.8 1.6 6.2e-14 52.0 1.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|330506410|ref|YP_004382838.1| - 0.077 12.5 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain CitMHS PF03600.11 gi|330506411|ref|YP_004382839.1| - 4.4e-31 107.7 31.7 1.3e-20 73.3 5.7 2.1 2 0 0 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|330506411|ref|YP_004382839.1| - 4e-17 61.5 0.0 2.3e-07 30.3 0.0 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|330506411|ref|YP_004382839.1| - 5.7e-12 45.2 40.5 1.3e-07 30.8 9.9 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region AcetylCoA_hyd_C PF13336.1 gi|330506413|ref|YP_004382841.1| - 4.7e-57 191.9 0.0 7.9e-57 191.2 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|330506413|ref|YP_004382841.1| - 1.3e-38 132.7 0.0 3.1e-38 131.5 0.0 1.6 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.19 gi|330506413|ref|YP_004382841.1| - 7.4e-08 32.3 0.0 1.7e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family CoA_trans PF01144.18 gi|330506413|ref|YP_004382841.1| - 4.8e-06 25.9 0.0 0.009 15.2 0.0 2.4 2 0 0 2 2 2 2 Coenzyme A transferase Acetyltransf_4 PF13420.1 gi|330506413|ref|YP_004382841.1| - 9.7e-06 25.6 0.0 2e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|330506413|ref|YP_004382841.1| - 2.1e-05 24.7 0.0 3.8e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|330506413|ref|YP_004382841.1| - 0.00026 20.6 0.0 0.00066 19.3 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein DeoRC PF00455.17 gi|330506413|ref|YP_004382841.1| - 0.0093 15.6 0.0 0.026 14.1 0.0 1.7 2 0 0 2 2 2 1 DeoR C terminal sensor domain Acetyltransf_7 PF13508.1 gi|330506413|ref|YP_004382841.1| - 0.051 13.7 0.0 0.14 12.3 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|330506413|ref|YP_004382841.1| - 0.13 12.4 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain OrfB_IS605 PF01385.14 gi|330506414|ref|YP_004382842.1| - 6.4e-34 117.3 1.1 1.1e-33 116.5 0.0 1.8 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330506414|ref|YP_004382842.1| - 4.4e-24 83.9 0.0 9.9e-24 82.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330506414|ref|YP_004382842.1| - 2.7e-20 71.4 2.3 5.5e-20 70.4 1.6 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|330506414|ref|YP_004382842.1| - 0.0079 15.9 0.1 0.015 15.1 0.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.10 gi|330506414|ref|YP_004382842.1| - 0.029 13.7 0.6 0.93 8.9 0.0 3.0 3 0 0 3 3 3 0 RecR protein zinc_ribbon_2 PF13240.1 gi|330506414|ref|YP_004382842.1| - 0.35 10.4 1.6 2.1 7.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RsmJ PF04378.8 gi|330506415|ref|YP_004382843.1| - 3.7e-13 49.0 0.0 4.9e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA small subunit methyltransferase D, RsmJ DUF4257 PF14074.1 gi|330506416|ref|YP_004382844.1| - 0.0083 15.7 2.4 0.091 12.4 1.6 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF4257) FeoB_N PF02421.13 gi|330506417|ref|YP_004382845.1| - 1.6e-49 167.1 0.7 2.3e-49 166.6 0.5 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|330506417|ref|YP_004382845.1| - 3.1e-27 94.6 17.4 2.6e-15 56.2 3.8 2.5 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|330506417|ref|YP_004382845.1| - 3.3e-15 56.0 0.2 5.1e-15 55.4 0.1 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|330506417|ref|YP_004382845.1| - 9.5e-15 53.7 1.2 9.5e-15 53.7 0.8 2.5 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus SRPRB PF09439.5 gi|330506417|ref|YP_004382845.1| - 0.00029 20.0 0.0 0.00044 19.5 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|330506417|ref|YP_004382845.1| - 0.009 16.5 0.0 0.018 15.4 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein Gtr1_RagA PF04670.7 gi|330506417|ref|YP_004382845.1| - 0.011 14.8 0.0 0.026 13.6 0.0 1.7 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region AIG1 PF04548.11 gi|330506417|ref|YP_004382845.1| - 0.16 11.0 0.1 0.24 10.4 0.1 1.2 1 0 0 1 1 1 0 AIG1 family PPC PF04151.10 gi|330506418|ref|YP_004382846.1| - 0.18 12.8 0.5 3 8.8 0.3 2.4 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain Transmemb_17 PF09799.4 gi|330506418|ref|YP_004382846.1| - 1.5 9.2 8.8 0.25 11.7 1.5 2.4 2 1 1 3 3 3 0 Predicted membrane protein Fasciclin PF02469.17 gi|330506419|ref|YP_004382847.1| - 1.7e-41 141.2 0.0 3.4e-22 78.7 0.0 2.1 2 0 0 2 2 2 2 Fasciclin domain Fer4_14 PF13394.1 gi|330506424|ref|YP_004382852.1| - 1.2e-18 67.2 0.5 8.6e-18 64.4 0.2 2.1 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330506424|ref|YP_004382852.1| - 1e-09 38.6 1.0 1.1e-08 35.3 0.6 2.3 2 1 0 2 2 2 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|330506424|ref|YP_004382852.1| - 3.9e-09 36.8 0.2 6.6e-09 36.1 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Cyclophil_like PF04126.8 gi|330506425|ref|YP_004382853.1| - 2.3e-31 107.8 0.0 2.6e-31 107.6 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like DUF3830 PF12903.2 gi|330506425|ref|YP_004382853.1| - 1.6e-05 24.3 0.0 2e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3830) Gln-synt_C PF00120.19 gi|330506426|ref|YP_004382854.1| - 6.3e-98 327.0 0.0 7.9e-98 326.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|330506426|ref|YP_004382854.1| - 7.1e-29 99.2 0.0 1.5e-28 98.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DUF3071 PF11268.3 gi|330506426|ref|YP_004382854.1| - 0.14 11.8 0.1 0.28 10.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) GATase_2 PF00310.16 gi|330506427|ref|YP_004382855.1| - 6.1e-25 87.6 0.0 8.2e-25 87.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|330506427|ref|YP_004382855.1| - 1e-12 48.1 0.0 2.1e-11 43.9 0.0 2.6 2 1 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|330506427|ref|YP_004382855.1| - 8.3e-09 35.2 0.0 5.7e-07 29.3 0.0 2.6 2 1 0 2 2 2 1 Glutamine amidotransferase domain DUF620 PF04788.7 gi|330506427|ref|YP_004382855.1| - 0.17 11.0 0.0 0.24 10.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF620) Glu_synthase PF01645.12 gi|330506428|ref|YP_004382856.1| - 8.9e-139 462.4 0.1 8.9e-139 462.4 0.1 1.3 2 0 0 2 2 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.9 gi|330506428|ref|YP_004382856.1| - 1.8e-09 37.3 0.1 3.4e-05 23.2 0.0 2.5 2 1 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.13 gi|330506428|ref|YP_004382856.1| - 4.9e-08 32.2 6.9 3.8e-07 29.2 2.1 2.9 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Fer4_9 PF13187.1 gi|330506428|ref|YP_004382856.1| - 1.9e-06 28.0 11.2 1.9e-06 28.0 7.8 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330506428|ref|YP_004382856.1| - 1.5e-05 24.3 2.8 1.5e-05 24.3 1.9 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain IMPDH PF00478.20 gi|330506428|ref|YP_004382856.1| - 4.1e-05 22.6 11.7 4.9e-05 22.3 4.1 2.6 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4_21 PF14697.1 gi|330506428|ref|YP_004382856.1| - 0.00015 21.5 8.9 0.00015 21.5 6.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330506428|ref|YP_004382856.1| - 0.00016 21.3 23.3 0.0016 18.1 1.5 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330506428|ref|YP_004382856.1| - 0.00025 21.7 0.6 0.00025 21.7 0.4 3.3 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|330506428|ref|YP_004382856.1| - 0.00036 20.8 23.6 0.0027 18.0 8.7 3.1 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330506428|ref|YP_004382856.1| - 0.00076 19.4 6.5 0.00076 19.4 4.5 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain NMO PF03060.10 gi|330506428|ref|YP_004382856.1| - 0.0011 18.2 4.3 0.0011 18.1 2.0 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase Fer4_4 PF12800.2 gi|330506428|ref|YP_004382856.1| - 0.025 14.9 2.8 0.025 14.9 2.0 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330506428|ref|YP_004382856.1| - 0.026 14.4 2.2 0.026 14.4 1.5 3.7 3 0 0 3 3 3 0 4Fe-4S binding domain His_biosynth PF00977.16 gi|330506428|ref|YP_004382856.1| - 0.027 13.7 0.2 0.064 12.5 0.2 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein Fer4_18 PF13746.1 gi|330506428|ref|YP_004382856.1| - 0.034 14.5 3.0 0.034 14.5 2.1 3.1 2 1 1 3 3 2 0 4Fe-4S dicluster domain DHO_dh PF01180.16 gi|330506428|ref|YP_004382856.1| - 0.053 12.4 4.7 0.17 10.8 2.7 2.3 2 1 0 2 2 2 0 Dihydroorotate dehydrogenase Fer4_17 PF13534.1 gi|330506428|ref|YP_004382856.1| - 0.12 12.6 18.3 0.22 11.8 0.4 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain GXGXG PF01493.14 gi|330506429|ref|YP_004382857.1| - 1e-34 119.3 5.7 1.3e-34 118.9 4.0 1.1 1 0 0 1 1 1 1 GXGXG motif Fer4_11 PF13247.1 gi|330506430|ref|YP_004382858.1| - 1.9e-13 50.1 15.0 1.9e-13 50.1 10.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330506430|ref|YP_004382858.1| - 1.8e-12 46.5 37.0 5.1e-06 26.1 0.8 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.22 gi|330506430|ref|YP_004382858.1| - 2.5e-12 45.8 35.2 7.2e-08 31.7 1.0 5.7 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330506430|ref|YP_004382858.1| - 6.1e-12 45.7 30.1 9.9e-06 25.8 9.9 3.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330506430|ref|YP_004382858.1| - 1.2e-10 40.6 13.1 6.7e-07 28.8 1.2 4.7 4 2 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330506430|ref|YP_004382858.1| - 1.8e-07 30.8 31.7 0.0011 18.6 9.1 3.4 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330506430|ref|YP_004382858.1| - 1e-06 28.9 33.4 0.00018 21.7 7.6 3.6 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330506430|ref|YP_004382858.1| - 1.1e-05 25.3 37.6 0.00067 19.7 1.6 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330506430|ref|YP_004382858.1| - 1.2e-05 25.2 29.9 0.0013 18.7 9.2 3.5 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330506430|ref|YP_004382858.1| - 0.00049 20.7 31.5 1.2 9.8 0.3 4.6 2 1 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|330506430|ref|YP_004382858.1| - 0.00054 19.7 35.5 0.0024 17.7 9.2 3.4 1 1 2 3 3 3 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330506430|ref|YP_004382858.1| - 0.00063 20.1 45.6 0.0068 16.8 3.5 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330506430|ref|YP_004382858.1| - 0.0019 18.4 33.7 0.0062 16.8 0.9 4.2 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330506430|ref|YP_004382858.1| - 0.0062 17.0 1.1 0.0062 17.0 0.8 3.6 3 1 1 4 4 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|330506430|ref|YP_004382858.1| - 0.021 15.2 1.5 0.021 15.2 1.0 4.9 3 1 2 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|330506430|ref|YP_004382858.1| - 0.048 14.0 1.1 0.048 14.0 0.7 3.7 3 2 0 3 3 3 0 4Fe-4S single cluster domain Fer4_7 PF12838.2 gi|330506431|ref|YP_004382859.1| - 2.3e-08 34.3 30.0 6.9e-05 23.1 7.7 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330506431|ref|YP_004382859.1| - 1.6e-06 27.7 15.3 5.2e-06 26.1 7.5 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330506431|ref|YP_004382859.1| - 2.1e-06 27.8 7.9 2.1e-06 27.8 5.5 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330506431|ref|YP_004382859.1| - 7.9e-06 25.2 2.6 7.9e-06 25.2 1.8 3.4 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330506431|ref|YP_004382859.1| - 2.4e-05 24.0 9.6 2.4e-05 24.0 6.7 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330506431|ref|YP_004382859.1| - 0.00011 21.9 2.5 0.00011 21.9 1.7 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330506431|ref|YP_004382859.1| - 0.00066 19.4 1.7 0.00066 19.4 1.2 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|330506431|ref|YP_004382859.1| - 0.0038 17.4 24.6 0.012 15.9 2.4 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain zf-HYPF PF07503.7 gi|330506431|ref|YP_004382859.1| - 0.034 13.5 1.2 3.6 7.0 0.0 2.8 2 0 0 2 2 2 0 HypF finger Fer4_3 PF12798.2 gi|330506431|ref|YP_004382859.1| - 0.11 13.0 3.1 0.11 13.0 2.2 3.2 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330506431|ref|YP_004382859.1| - 0.13 13.0 16.8 3.6 8.4 2.6 3.0 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|330506431|ref|YP_004382859.1| - 0.86 10.0 12.4 0.46 10.9 1.0 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|330506431|ref|YP_004382859.1| - 0.94 9.9 17.3 0.3 11.5 1.6 3.3 4 0 0 4 4 3 0 4Fe-4S dicluster domain zf-C2H2_6 PF13912.1 gi|330506431|ref|YP_004382859.1| - 1.6 8.7 4.3 23 5.0 0.1 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger Fer4_8 PF13183.1 gi|330506431|ref|YP_004382859.1| - 3.1 7.8 20.3 0.14 12.2 8.0 2.9 1 1 1 2 2 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330506431|ref|YP_004382859.1| - 3.8 7.9 19.4 7.5 6.9 3.6 3.3 2 2 2 4 4 4 0 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.5 gi|330506431|ref|YP_004382859.1| - 5.2 7.2 7.0 0.49 10.5 1.5 1.8 2 1 0 2 2 2 0 c-SKI Smad4 binding domain GHMP_kinases_N PF00288.21 gi|330506432|ref|YP_004382860.1| - 1.8e-05 24.7 0.0 4.3e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF2148 PF09918.4 gi|330506433|ref|YP_004382861.1| - 0.00032 20.3 0.0 0.00059 19.4 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) ANTAR PF03861.9 gi|330506435|ref|YP_004382863.1| - 0.011 15.3 0.1 0.015 14.8 0.1 1.2 1 0 0 1 1 1 0 ANTAR domain EF1_GNE PF00736.14 gi|330506436|ref|YP_004382864.1| - 7.1e-20 70.5 0.4 7.5e-20 70.4 0.3 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|330506436|ref|YP_004382864.1| - 0.012 15.7 0.2 0.24 11.5 0.0 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF59 PF01883.14 gi|330506436|ref|YP_004382864.1| - 0.015 15.2 0.7 0.07 13.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF59 P2 PF07194.6 gi|330506436|ref|YP_004382864.1| - 0.025 14.4 0.3 0.077 12.8 0.2 1.8 1 1 1 2 2 2 0 P2 response regulator binding domain POTRA_1 PF08478.5 gi|330506436|ref|YP_004382864.1| - 0.1 12.6 0.0 0.4 10.7 0.0 1.8 2 0 0 2 2 2 0 POTRA domain, FtsQ-type Ribosomal_L4 PF00573.17 gi|330506436|ref|YP_004382864.1| - 0.1 11.9 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L4/L1 family DUF1610 PF07754.6 gi|330506437|ref|YP_004382865.1| - 3.4e-07 30.2 20.4 9.8e-05 22.3 4.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.6 gi|330506437|ref|YP_004382865.1| - 0.01 15.4 8.3 0.057 13.0 0.2 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|330506437|ref|YP_004382865.1| - 0.033 14.0 11.9 2.1 8.2 8.3 2.3 1 1 0 1 1 1 0 Double zinc ribbon FYVE_2 PF02318.11 gi|330506437|ref|YP_004382865.1| - 0.038 13.8 5.9 0.045 13.6 4.1 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger C1_1 PF00130.17 gi|330506437|ref|YP_004382865.1| - 0.081 12.6 9.8 0.98 9.2 0.1 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-Mss51 PF13824.1 gi|330506437|ref|YP_004382865.1| - 0.21 11.4 13.4 0.66 9.8 1.5 2.7 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 NMDAR2_C PF10565.4 gi|330506437|ref|YP_004382865.1| - 0.26 9.9 3.9 0.27 9.8 2.7 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus Prok-RING_1 PF14446.1 gi|330506437|ref|YP_004382865.1| - 0.26 11.0 10.9 0.3 10.8 0.3 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Fer4 PF00037.22 gi|330506437|ref|YP_004382865.1| - 0.39 10.3 0.3 0.39 10.3 0.2 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain DUF2752 PF10825.3 gi|330506437|ref|YP_004382865.1| - 0.68 10.0 7.4 2.3 8.2 0.4 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) Nudix_N_2 PF14803.1 gi|330506437|ref|YP_004382865.1| - 0.73 9.5 0.1 0.73 9.5 0.1 3.7 4 0 0 4 4 4 0 Nudix N-terminal PolC_DP2 PF03833.8 gi|330506437|ref|YP_004382865.1| - 1 6.9 6.3 1.1 6.8 4.4 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-FPG_IleRS PF06827.9 gi|330506437|ref|YP_004382865.1| - 1.2 8.8 10.9 7.6 6.2 5.7 2.7 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.1 gi|330506437|ref|YP_004382865.1| - 1.6 8.0 17.5 1.1 8.6 1.9 3.8 1 1 3 4 4 4 0 zinc-ribbon domain zf-UBP PF02148.14 gi|330506437|ref|YP_004382865.1| - 3.2 7.9 10.3 0.3 11.2 2.1 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Zn_Tnp_IS91 PF14319.1 gi|330506437|ref|YP_004382865.1| - 3.2 7.2 9.5 6.5 6.3 6.6 1.6 1 1 0 1 1 1 0 Transposase zinc-binding domain Baculo_ME53 PF06061.6 gi|330506437|ref|YP_004382865.1| - 3.3 6.6 6.7 4.3 6.2 4.7 1.2 1 0 0 1 1 1 0 Baculoviridae ME53 Zn_Tnp_IS1595 PF12760.2 gi|330506437|ref|YP_004382865.1| - 3.5 7.5 18.4 49 3.8 12.8 2.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-RING_5 PF14634.1 gi|330506437|ref|YP_004382865.1| - 3.5 7.4 12.2 1.1 8.9 0.3 2.4 2 1 0 2 2 2 0 zinc-RING finger domain C1_3 PF07649.7 gi|330506437|ref|YP_004382865.1| - 4.2 7.4 12.4 0.2 11.6 1.9 2.5 1 1 2 3 3 3 0 C1-like domain Zn-ribbon_8 PF09723.5 gi|330506437|ref|YP_004382865.1| - 5 7.1 16.7 18 5.3 0.3 3.9 2 1 2 4 4 4 0 Zinc ribbon domain IBR PF01485.16 gi|330506437|ref|YP_004382865.1| - 5.4 6.9 12.2 16 5.4 8.4 1.8 1 1 0 1 1 1 0 IBR domain zinc_ribbon_4 PF13717.1 gi|330506437|ref|YP_004382865.1| - 6.6 6.5 16.6 7 6.4 0.8 3.9 2 1 2 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|330506437|ref|YP_004382865.1| - 7.4 6.2 16.7 5.9 6.5 0.1 3.9 2 1 2 4 4 4 0 zinc-ribbon domain ADK_lid PF05191.9 gi|330506437|ref|YP_004382865.1| - 9.2 6.0 14.1 6.1 6.5 0.4 3.8 3 1 1 4 4 4 0 Adenylate kinase, active site lid TFIIS_C PF01096.13 gi|330506437|ref|YP_004382865.1| - 9.4 5.9 19.2 2.1 8.0 0.4 3.9 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) zf-AN1 PF01428.11 gi|330506437|ref|YP_004382865.1| - 9.6 6.1 13.8 9.2 6.2 3.7 2.9 2 1 1 3 3 3 0 AN1-like Zinc finger zf-B_box PF00643.19 gi|330506437|ref|YP_004382865.1| - 9.9 6.1 11.9 0.85 9.5 2.9 2.4 1 1 1 2 2 2 0 B-box zinc finger AA_kinase PF00696.23 gi|330506438|ref|YP_004382866.1| - 2.8e-13 49.9 0.0 2.8e-11 43.4 0.0 2.1 1 1 0 1 1 1 1 Amino acid kinase family NUDIX PF00293.23 gi|330506439|ref|YP_004382867.1| - 1e-21 77.0 0.0 1.2e-21 76.7 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain tRNA-synt_1c PF00749.16 gi|330506440|ref|YP_004382868.1| - 5.5e-63 212.5 0.0 6.9e-63 212.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|330506440|ref|YP_004382868.1| - 3.2e-23 82.2 0.0 5.2e-23 81.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain CHAT PF12770.2 gi|330506441|ref|YP_004382869.1| - 6.7e-27 94.3 0.2 7.3e-27 94.2 0.1 1.0 1 0 0 1 1 1 1 CHAT domain Acylphosphatase PF00708.13 gi|330506442|ref|YP_004382870.1| - 5.4e-20 71.2 0.0 1.4e-19 69.9 0.0 1.8 1 0 0 1 1 1 1 Acylphosphatase DUF948 PF06103.6 gi|330506442|ref|YP_004382870.1| - 0.00095 18.9 0.2 0.1 12.4 0.0 3.0 1 1 3 4 4 4 3 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.7 gi|330506442|ref|YP_004382870.1| - 0.0034 17.2 0.0 3.4 7.4 0.0 2.9 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus IncA PF04156.9 gi|330506442|ref|YP_004382870.1| - 0.011 15.3 3.9 0.97 9.0 0.3 2.6 1 1 2 3 3 3 0 IncA protein IMD PF08397.6 gi|330506442|ref|YP_004382870.1| - 0.012 14.9 0.7 0.057 12.7 0.1 2.1 1 1 1 2 2 2 0 IRSp53/MIM homology domain Reo_sigmaC PF04582.7 gi|330506442|ref|YP_004382870.1| - 0.023 13.9 0.6 2.7 7.0 0.1 2.1 1 1 1 2 2 2 0 Reovirus sigma C capsid protein IFT57 PF10498.4 gi|330506442|ref|YP_004382870.1| - 0.04 12.6 0.5 0.09 11.4 0.3 1.7 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Snapin_Pallidin PF14712.1 gi|330506442|ref|YP_004382870.1| - 0.04 14.2 2.4 23 5.3 0.1 4.0 2 1 3 5 5 5 0 Snapin/Pallidin MitMem_reg PF13012.1 gi|330506442|ref|YP_004382870.1| - 0.057 13.5 0.1 2.8 8.0 0.0 2.4 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function DUF1664 PF07889.7 gi|330506442|ref|YP_004382870.1| - 0.059 13.1 4.7 1 9.1 0.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) LON PF02190.11 gi|330506442|ref|YP_004382870.1| - 0.091 12.4 0.3 0.25 10.9 0.2 1.9 1 1 0 1 1 1 0 ATP-dependent protease La (LON) domain Apolipoprotein PF01442.13 gi|330506442|ref|YP_004382870.1| - 0.13 11.7 0.3 0.97 8.9 0.1 2.2 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain UPF0184 PF03670.8 gi|330506442|ref|YP_004382870.1| - 0.15 12.2 2.3 2.4 8.3 0.1 3.5 1 1 3 4 4 4 0 Uncharacterised protein family (UPF0184) Pox_polyA_pol_N PF12630.2 gi|330506442|ref|YP_004382870.1| - 0.24 11.5 1.1 89 3.2 0.0 3.8 1 1 3 4 4 4 0 Poxvirus poly(A) polymerase N-terminal domain UbiA PF01040.13 gi|330506443|ref|YP_004382871.1| - 2.4e-40 138.3 22.6 3.1e-40 138.0 15.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1378 PF07125.6 gi|330506443|ref|YP_004382871.1| - 0.028 14.3 0.4 1.1 9.2 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1378) DAP10 PF07213.6 gi|330506443|ref|YP_004382871.1| - 1.9 8.3 5.6 8.2 6.2 0.3 3.3 2 1 1 3 3 3 0 DAP10 membrane protein B-block_TFIIIC PF04182.7 gi|330506444|ref|YP_004382872.1| - 0.00011 22.0 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|330506444|ref|YP_004382872.1| - 0.00022 20.8 0.1 0.00048 19.7 0.1 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|330506444|ref|YP_004382872.1| - 0.0012 18.4 0.0 0.0033 17.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|330506444|ref|YP_004382872.1| - 0.1 12.9 0.0 0.27 11.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain tRNA_deacylase PF04414.7 gi|330506445|ref|YP_004382873.1| - 2.8e-46 157.3 0.0 3.2e-46 157.1 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase MarR_2 PF12802.2 gi|330506446|ref|YP_004382874.1| - 1.1e-06 28.1 0.0 0.096 12.3 0.0 3.3 3 0 0 3 3 3 2 MarR family MarR PF01047.17 gi|330506446|ref|YP_004382874.1| - 0.00024 20.7 0.0 0.65 9.7 0.0 2.4 2 0 0 2 2 2 2 MarR family B-block_TFIIIC PF04182.7 gi|330506446|ref|YP_004382874.1| - 0.00068 19.4 0.0 0.042 13.7 0.0 3.0 3 0 0 3 3 3 1 B-block binding subunit of TFIIIC HTH_3 PF01381.17 gi|330506446|ref|YP_004382874.1| - 0.01 15.6 0.0 2.5 8.0 0.0 3.4 5 0 0 5 5 5 0 Helix-turn-helix ACBP PF00887.14 gi|330506446|ref|YP_004382874.1| - 0.013 15.1 0.0 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 Acyl CoA binding protein TrmB PF01978.14 gi|330506446|ref|YP_004382874.1| - 0.024 14.3 0.2 21 4.9 0.0 3.4 4 0 0 4 4 4 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|330506446|ref|YP_004382874.1| - 0.025 14.6 0.2 2.9 8.1 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|330506446|ref|YP_004382874.1| - 0.042 13.4 0.0 3 7.6 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain Cpn60_TCP1 PF00118.19 gi|330506447|ref|YP_004382875.1| - 1.8e-166 554.5 15.7 2.1e-166 554.3 10.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA PF00004.24 gi|330506448|ref|YP_004382876.1| - 1.5e-44 151.4 1.3 3e-44 150.4 0.0 2.2 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|330506448|ref|YP_004382876.1| - 1.8e-05 24.9 0.3 0.00087 19.4 0.2 2.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330506448|ref|YP_004382876.1| - 2.3e-05 24.4 0.0 6.2e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.7 gi|330506448|ref|YP_004382876.1| - 2.4e-05 23.5 0.0 7.7e-05 21.8 0.0 1.8 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|330506448|ref|YP_004382876.1| - 9e-05 22.2 0.3 0.0014 18.3 0.2 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|330506448|ref|YP_004382876.1| - 0.00028 20.7 0.1 0.00081 19.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|330506448|ref|YP_004382876.1| - 0.00037 20.4 1.5 0.00054 19.9 0.0 2.0 3 0 0 3 3 2 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|330506448|ref|YP_004382876.1| - 0.001 19.8 0.1 0.0036 18.1 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|330506448|ref|YP_004382876.1| - 0.0011 18.8 0.0 0.0049 16.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|330506448|ref|YP_004382876.1| - 0.0011 17.7 0.2 0.0029 16.4 0.0 1.7 2 0 0 2 2 2 1 TIP49 C-terminus Zeta_toxin PF06414.7 gi|330506448|ref|YP_004382876.1| - 0.0042 16.2 0.0 0.01 14.9 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin DUF815 PF05673.8 gi|330506448|ref|YP_004382876.1| - 0.0085 15.0 0.0 0.017 14.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|330506448|ref|YP_004382876.1| - 0.0098 15.4 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|330506448|ref|YP_004382876.1| - 0.011 15.8 0.0 0.022 14.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.1 gi|330506448|ref|YP_004382876.1| - 0.011 15.4 0.0 0.028 14.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain IstB_IS21 PF01695.12 gi|330506448|ref|YP_004382876.1| - 0.014 14.8 0.1 0.03 13.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|330506448|ref|YP_004382876.1| - 0.019 14.4 0.1 0.24 10.8 0.0 2.5 3 0 0 3 3 3 0 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|330506448|ref|YP_004382876.1| - 0.019 14.0 0.1 0.039 13.1 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|330506448|ref|YP_004382876.1| - 0.024 14.2 0.1 0.21 11.2 0.1 2.2 1 1 1 2 2 2 0 NACHT domain FlaC_arch PF05377.6 gi|330506448|ref|YP_004382876.1| - 0.027 14.3 1.4 3.6 7.5 0.3 2.8 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) AAA_25 PF13481.1 gi|330506448|ref|YP_004382876.1| - 0.039 13.3 1.2 0.38 10.1 0.1 2.3 1 1 1 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|330506448|ref|YP_004382876.1| - 0.047 12.5 0.4 0.13 11.1 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain AAA_18 PF13238.1 gi|330506448|ref|YP_004382876.1| - 0.049 13.9 0.6 0.25 11.6 0.0 2.4 3 0 0 3 3 2 0 AAA domain AAA_3 PF07726.6 gi|330506448|ref|YP_004382876.1| - 0.079 12.5 0.0 0.18 11.3 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|330506448|ref|YP_004382876.1| - 0.096 12.7 0.1 0.67 9.9 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain KaiC PF06745.8 gi|330506448|ref|YP_004382876.1| - 0.29 10.2 0.1 0.29 10.2 0.0 3.2 4 1 1 5 5 5 0 KaiC Enolase_C PF00113.17 gi|330506450|ref|YP_004382878.1| - 5.3e-107 357.1 0.0 6.7e-107 356.8 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|330506450|ref|YP_004382878.1| - 2.3e-59 199.0 0.1 4.2e-59 198.2 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|330506450|ref|YP_004382878.1| - 0.072 12.0 0.2 0.52 9.1 0.0 2.1 2 0 0 2 2 2 0 Methylaspartate ammonia-lyase C-terminus Cation_efflux PF01545.16 gi|330506451|ref|YP_004382879.1| - 2.8e-67 226.7 4.9 3.2e-67 226.5 3.4 1.0 1 0 0 1 1 1 1 Cation efflux family Usp PF00582.21 gi|330506452|ref|YP_004382880.1| - 4e-30 104.8 0.1 4.7e-30 104.6 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family OrfB_IS605 PF01385.14 gi|330506453|ref|YP_004382881.1| - 7.5e-26 90.9 0.0 1.1e-25 90.4 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330506453|ref|YP_004382881.1| - 1.4e-21 75.8 0.1 2.7e-21 74.9 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|330506453|ref|YP_004382881.1| - 0.018 14.8 0.2 0.031 14.1 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon OpuAC PF04069.7 gi|330506453|ref|YP_004382881.1| - 0.02 14.2 0.0 0.027 13.8 0.0 1.1 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system Catalase PF00199.14 gi|330506454|ref|YP_004382882.1| - 3.1e-182 605.4 0.5 3.6e-182 605.2 0.3 1.0 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.7 gi|330506454|ref|YP_004382882.1| - 3.3e-22 78.1 0.0 6.7e-22 77.1 0.0 1.5 1 0 0 1 1 1 1 Catalase-related immune-responsive Rubrerythrin PF02915.12 gi|330506455|ref|YP_004382883.1| - 3.5e-33 114.8 1.3 5e-33 114.3 0.9 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|330506455|ref|YP_004382883.1| - 4.2e-05 23.3 1.4 0.00065 19.4 0.9 2.1 1 1 1 2 2 2 2 Ferritin-like domain HypA PF01155.14 gi|330506455|ref|YP_004382883.1| - 0.0022 17.6 0.4 0.0042 16.7 0.2 1.6 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|330506455|ref|YP_004382883.1| - 0.13 12.0 0.1 0.13 12.0 0.0 2.6 4 0 0 4 4 4 0 RNA polymerases M/15 Kd subunit TFIIS_C PF01096.13 gi|330506455|ref|YP_004382883.1| - 0.18 11.4 2.0 1.2 8.8 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Nudix_N_2 PF14803.1 gi|330506455|ref|YP_004382883.1| - 0.31 10.7 2.3 2.3 7.9 0.0 2.9 3 0 0 3 3 3 0 Nudix N-terminal DUF4379 PF14311.1 gi|330506455|ref|YP_004382883.1| - 0.7 9.7 5.9 2.4 8.0 3.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) DUF3716 PF12511.3 gi|330506455|ref|YP_004382883.1| - 2.5 7.7 5.2 5.6 6.6 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3716) TPR_11 PF13414.1 gi|330506457|ref|YP_004382885.1| - 6.2e-30 102.6 19.4 1.7e-11 43.6 0.3 4.1 2 2 1 4 4 4 4 TPR repeat TPR_2 PF07719.12 gi|330506457|ref|YP_004382885.1| - 3e-29 98.5 18.4 9.3e-07 28.3 0.1 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330506457|ref|YP_004382885.1| - 1.6e-27 93.9 20.5 4e-07 29.3 0.1 6.6 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330506457|ref|YP_004382885.1| - 6e-23 80.9 14.9 7.2e-10 39.2 1.5 4.1 1 1 2 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330506457|ref|YP_004382885.1| - 4.5e-20 71.7 14.5 2e-08 34.4 1.2 4.1 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330506457|ref|YP_004382885.1| - 9.7e-17 59.9 8.4 0.0015 19.0 0.1 5.7 1 1 6 7 7 6 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330506457|ref|YP_004382885.1| - 3.6e-15 54.8 20.2 0.002 18.1 0.1 6.8 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330506457|ref|YP_004382885.1| - 1.6e-13 49.3 19.0 0.017 14.8 0.1 6.2 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330506457|ref|YP_004382885.1| - 9.2e-12 44.7 17.3 1.5e-05 24.8 0.7 4.2 1 1 3 4 4 4 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330506457|ref|YP_004382885.1| - 2.1e-07 30.6 3.1 0.00048 19.9 0.1 4.2 3 1 1 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat TPR_6 PF13174.1 gi|330506457|ref|YP_004382885.1| - 2.8e-06 27.4 16.9 0.073 13.5 0.1 5.1 5 1 0 5 5 5 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|330506457|ref|YP_004382885.1| - 4e-06 26.8 10.0 2e-05 24.6 0.8 3.2 2 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|330506457|ref|YP_004382885.1| - 2.2e-05 23.9 3.7 0.21 11.4 0.0 4.7 5 0 0 5 5 4 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330506457|ref|YP_004382885.1| - 0.00012 21.8 1.3 1.1 9.2 0.0 3.6 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|330506457|ref|YP_004382885.1| - 0.00016 21.7 0.3 2.8 8.6 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|330506457|ref|YP_004382885.1| - 0.00016 21.2 3.7 0.14 11.6 0.0 3.7 2 2 1 3 3 3 1 Plant specific mitochondrial import receptor subunit TOM20 RNase_PH_C PF03725.10 gi|330506457|ref|YP_004382885.1| - 0.0028 17.5 0.0 1.2 9.1 0.0 2.4 1 1 1 2 2 2 1 3' exoribonuclease family, domain 2 NARP1 PF12569.3 gi|330506457|ref|YP_004382885.1| - 0.0029 16.4 1.2 5.4 5.6 0.1 2.9 1 1 2 3 3 3 1 NMDA receptor-regulated protein 1 HrpB1_HrpK PF09613.5 gi|330506457|ref|YP_004382885.1| - 0.051 13.0 0.0 0.15 11.5 0.0 1.7 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) MIT PF04212.13 gi|330506457|ref|YP_004382885.1| - 0.49 10.3 14.7 0.61 10.0 0.1 4.9 2 2 2 4 4 4 0 MIT (microtubule interacting and transport) domain TPR_3 PF07720.7 gi|330506457|ref|YP_004382885.1| - 0.51 10.2 9.0 2.6 7.9 0.8 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330506457|ref|YP_004382885.1| - 0.62 10.0 8.9 1 9.3 0.1 4.1 5 0 0 5 5 4 0 Tetratricopeptide repeat GATase_6 PF13522.1 gi|330506458|ref|YP_004382886.1| - 1.9e-23 82.9 0.0 2.6e-23 82.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|330506458|ref|YP_004382886.1| - 4.1e-22 78.2 0.0 1.8e-21 76.1 0.0 1.8 1 1 1 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|330506458|ref|YP_004382886.1| - 1.4e-15 56.8 0.1 3.3e-15 55.6 0.1 1.7 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|330506458|ref|YP_004382886.1| - 2.8e-07 29.5 0.1 3.8e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|330506458|ref|YP_004382886.1| - 0.049 13.3 0.0 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 Phosphoribosyl transferase domain DUF1699 PF08004.6 gi|330506459|ref|YP_004382887.1| - 4e-60 201.0 0.6 4.5e-60 200.8 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_9 PF08221.6 gi|330506459|ref|YP_004382887.1| - 0.052 13.4 0.1 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Ribosomal_S6 PF01250.12 gi|330506459|ref|YP_004382887.1| - 0.067 13.0 0.3 0.35 10.7 0.2 2.1 1 1 0 1 1 1 0 Ribosomal protein S6 PALP PF00291.20 gi|330506461|ref|YP_004382889.1| - 3.9e-24 85.4 0.0 7e-24 84.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.1 gi|330506461|ref|YP_004382889.1| - 1.9e-21 75.8 0.1 7.2e-21 74.0 0.0 2.1 3 0 0 3 3 3 1 Threonine synthase N terminus HAD PF12710.2 gi|330506461|ref|YP_004382889.1| - 0.034 14.3 0.0 0.1 12.7 0.0 1.8 1 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase CUE PF02845.11 gi|330506461|ref|YP_004382889.1| - 0.11 11.9 0.0 1.5 8.3 0.0 2.6 2 0 0 2 2 2 0 CUE domain CBS PF00571.23 gi|330506462|ref|YP_004382890.1| - 2.4e-42 142.4 13.7 1.4e-14 53.5 0.6 4.3 4 0 0 4 4 4 4 CBS domain RuvB_C PF05491.8 gi|330506462|ref|YP_004382890.1| - 0.086 12.4 0.1 0.21 11.2 0.1 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus H_kinase_N PF12282.3 gi|330506462|ref|YP_004382890.1| - 0.087 12.4 0.9 1.7 8.2 0.0 3.1 3 1 1 4 4 4 0 Signal transduction histidine kinase DUF1727 PF08353.5 gi|330506462|ref|YP_004382890.1| - 0.11 12.0 0.2 0.2 11.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1727) DUF1641 PF07849.6 gi|330506462|ref|YP_004382890.1| - 0.16 11.6 0.9 0.3 10.7 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1641) Usp PF00582.21 gi|330506463|ref|YP_004382891.1| - 1.2e-33 116.3 0.3 1.3e-33 116.1 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family SRP54 PF00448.17 gi|330506463|ref|YP_004382891.1| - 0.019 14.3 0.1 0.076 12.4 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AIRC PF00731.15 gi|330506463|ref|YP_004382891.1| - 0.089 12.0 0.1 0.22 10.7 0.0 1.8 2 0 0 2 2 2 0 AIR carboxylase Tox-REase-3 PF15647.1 gi|330506463|ref|YP_004382891.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 3 SpoU_sub_bind PF08032.7 gi|330506463|ref|YP_004382891.1| - 0.17 12.0 1.0 14 5.9 0.1 2.6 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding Amidohydro_1 PF01979.15 gi|330506464|ref|YP_004382892.1| - 4.6e-20 72.5 0.0 2e-19 70.4 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|330506464|ref|YP_004382892.1| - 1.3e-12 48.3 0.1 2.9e-12 47.2 0.1 1.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|330506464|ref|YP_004382892.1| - 1.2e-09 37.8 0.0 3.2e-07 29.9 0.0 2.6 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|330506464|ref|YP_004382892.1| - 4.5e-05 22.5 0.0 6.8e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|330506464|ref|YP_004382892.1| - 0.0011 18.7 0.0 0.0023 17.7 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase DdrB PF12747.2 gi|330506464|ref|YP_004382892.1| - 0.026 14.2 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 DdrB-like protein RibD_C PF01872.12 gi|330506465|ref|YP_004382893.1| - 6.2e-53 179.3 0.0 7e-53 179.2 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain SopD PF11047.3 gi|330506466|ref|YP_004382894.1| - 0.061 12.2 0.1 0.061 12.2 0.1 1.1 1 0 0 1 1 1 0 Salmonella outer protein D PLDc_2 PF13091.1 gi|330506468|ref|YP_004382896.1| - 1.1e-07 31.5 0.0 8.9e-07 28.6 0.0 2.2 2 0 0 2 2 2 1 PLD-like domain Helicase_C PF00271.26 gi|330506469|ref|YP_004382897.1| - 3e-06 26.9 0.0 7.8e-06 25.6 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|330506469|ref|YP_004382897.1| - 6.9e-05 22.4 0.0 0.42 10.0 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|330506469|ref|YP_004382897.1| - 0.0003 20.6 0.0 0.05 13.4 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|330506469|ref|YP_004382897.1| - 0.0003 19.6 0.0 0.24 10.1 0.0 2.3 2 0 0 2 2 2 2 SNF2 family N-terminal domain AAA PF00004.24 gi|330506469|ref|YP_004382897.1| - 0.0038 17.4 0.1 0.52 10.5 0.1 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|330506469|ref|YP_004382897.1| - 0.078 12.3 0.0 0.23 10.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain PIN PF01850.16 gi|330506471|ref|YP_004382899.1| - 6.3e-18 65.2 0.0 8.4e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 PIN domain OrfB_IS605 PF01385.14 gi|330506472|ref|YP_004382900.1| - 2.2e-43 148.2 0.2 3.9e-43 147.4 0.0 1.4 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330506472|ref|YP_004382900.1| - 1.4e-25 88.7 0.6 2.4e-25 87.9 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330506472|ref|YP_004382900.1| - 2.4e-15 55.5 1.9 5.4e-15 54.4 1.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain ATPgrasp_TupA PF14305.1 gi|330506472|ref|YP_004382900.1| - 0.051 12.8 0.1 0.077 12.2 0.1 1.3 1 0 0 1 1 1 0 TupA-like ATPgrasp DUF104 PF01954.11 gi|330506473|ref|YP_004382901.1| - 3.5e-17 62.1 0.5 4.1e-17 61.9 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 PT-HINT PF07591.6 gi|330506474|ref|YP_004382902.1| - 9.6e-09 35.2 0.0 4.7e-08 32.9 0.0 2.0 2 0 0 2 2 2 1 Pretoxin HINT domain Hom_end_hint PF05203.11 gi|330506474|ref|YP_004382902.1| - 1.1e-06 28.5 1.9 2.8e-06 27.2 0.1 2.3 2 1 1 3 3 3 1 Hom_end-associated Hint Hint PF01079.15 gi|330506474|ref|YP_004382902.1| - 0.00019 20.6 0.0 0.00065 18.9 0.0 1.8 1 1 0 1 1 1 1 Hint module Hint_2 PF13403.1 gi|330506474|ref|YP_004382902.1| - 0.015 15.2 0.0 7.1 6.5 0.0 2.4 2 0 0 2 2 2 0 Hint domain DDE_5 PF13546.1 gi|330506476|ref|YP_004382904.1| - 5e-15 55.0 0.0 6.1e-14 51.5 0.0 2.3 2 1 0 2 2 2 1 DDE superfamily endonuclease DDE_Tnp_2 PF04693.7 gi|330506476|ref|YP_004382904.1| - 1.8e-14 53.4 7.1 4.5e-13 48.9 4.9 2.5 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1 PF01609.16 gi|330506476|ref|YP_004382904.1| - 2.5e-11 43.5 0.5 4e-11 42.8 0.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain Bac_DNA_binding PF00216.16 gi|330506476|ref|YP_004382904.1| - 0.0016 18.3 0.8 0.16 11.9 0.2 3.4 3 1 0 3 3 3 1 Bacterial DNA-binding protein RNA_GG_bind PF10258.4 gi|330506476|ref|YP_004382904.1| - 0.0042 16.7 0.9 0.013 15.2 0.6 1.8 1 0 0 1 1 1 1 PHAX RNA-binding domain DUF4295 PF14128.1 gi|330506476|ref|YP_004382904.1| - 0.052 13.1 0.9 0.052 13.1 0.6 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4295) Laminin_G_3 PF13385.1 gi|330506477|ref|YP_004382905.1| - 3.7e-12 46.7 0.0 7.3e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily MFS_1 PF07690.11 gi|330506477|ref|YP_004382905.1| - 0.0047 15.7 0.5 0.0079 14.9 0.4 1.4 1 0 0 1 1 1 1 Major Facilitator Superfamily TraT PF05818.7 gi|330506477|ref|YP_004382905.1| - 0.035 13.5 0.0 0.059 12.7 0.0 1.3 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DDE_Tnp_ISL3 PF01610.12 gi|330506478|ref|YP_004382906.1| - 5.3e-73 245.6 1.3 8.2e-73 245.0 0.9 1.3 1 0 0 1 1 1 1 Transposase zf-ISL3 PF14690.1 gi|330506478|ref|YP_004382906.1| - 2.4e-12 46.6 6.5 5e-12 45.6 4.5 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Tnp_ISL3 PF13542.1 gi|330506478|ref|YP_004382906.1| - 3.2e-11 42.2 0.1 6.1e-11 41.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 MULE PF10551.4 gi|330506478|ref|YP_004382906.1| - 0.0009 19.3 0.4 0.013 15.6 0.3 2.4 1 1 0 1 1 1 1 MULE transposase domain DUF1034 PF06280.7 gi|330506479|ref|YP_004382907.1| - 0.084 13.2 0.0 0.2 12.0 0.0 1.6 1 0 0 1 1 1 0 Fn3-like domain (DUF1034) GDPD PF03009.12 gi|330506480|ref|YP_004382908.1| - 1.3e-10 41.2 0.0 1.4e-10 41.1 0.0 1.0 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Glyco_hydro_97 PF10566.4 gi|330506480|ref|YP_004382908.1| - 0.0085 15.2 0.0 0.0091 15.1 0.0 1.1 1 0 0 1 1 1 1 Glycoside hydrolase 97 DUF4361 PF14274.1 gi|330506481|ref|YP_004382909.1| - 0.043 13.4 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4361) MarR PF01047.17 gi|330506481|ref|YP_004382909.1| - 0.067 12.9 0.1 0.35 10.5 0.0 1.9 2 0 0 2 2 2 0 MarR family TrkH PF02386.11 gi|330506482|ref|YP_004382910.1| - 1.1e-56 191.9 22.1 1.1e-56 191.9 15.3 2.5 3 0 0 3 3 3 2 Cation transport protein ProSAAS PF07259.7 gi|330506482|ref|YP_004382910.1| - 0.17 11.4 0.4 0.31 10.5 0.0 1.5 2 0 0 2 2 2 0 ProSAAS precursor PepSY PF03413.14 gi|330506483|ref|YP_004382911.1| - 0.024 15.2 0.3 0.036 14.6 0.2 1.4 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain DUF3068 PF11271.3 gi|330506483|ref|YP_004382911.1| - 0.06 12.3 0.5 0.09 11.8 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3068) Phage_integ_N PF09003.5 gi|330506483|ref|YP_004382911.1| - 0.13 12.0 1.7 0.56 9.9 0.2 2.2 1 1 1 2 2 2 0 Bacteriophage lambda integrase, N-terminal domain YL1_C PF08265.6 gi|330506483|ref|YP_004382911.1| - 7.1 6.2 9.9 5.7 6.5 0.2 3.7 4 0 0 4 4 4 0 YL1 nuclear protein C-terminal domain HTH_3 PF01381.17 gi|330506484|ref|YP_004382912.1| - 2.1e-08 33.8 0.1 5.1e-08 32.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|330506484|ref|YP_004382912.1| - 1.4e-06 28.2 0.0 3.2e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|330506484|ref|YP_004382912.1| - 0.00022 21.3 0.0 0.00059 19.9 0.0 1.7 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_psq PF05225.11 gi|330506484|ref|YP_004382912.1| - 0.0085 15.6 0.4 0.18 11.3 0.0 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain TrmB PF01978.14 gi|330506484|ref|YP_004382912.1| - 0.093 12.4 0.1 0.26 11.0 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_31 PF13560.1 gi|330506484|ref|YP_004382912.1| - 0.098 12.8 0.5 0.36 11.0 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain PALP PF00291.20 gi|330506485|ref|YP_004382913.1| - 6.9e-23 81.3 0.0 9e-23 80.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ABC_tran PF00005.22 gi|330506486|ref|YP_004382914.1| - 8.9e-15 55.1 0.0 1.4e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330506486|ref|YP_004382914.1| - 1.9e-07 31.3 0.2 0.00014 21.9 0.3 2.5 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|330506486|ref|YP_004382914.1| - 1e-05 24.9 0.2 3.9e-05 22.9 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|330506486|ref|YP_004382914.1| - 2.6e-05 24.6 0.0 3e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330506486|ref|YP_004382914.1| - 5.4e-05 23.2 0.0 9e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|330506486|ref|YP_004382914.1| - 6.8e-05 22.7 0.0 0.046 13.6 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|330506486|ref|YP_004382914.1| - 9.1e-05 21.9 0.1 0.00021 20.7 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|330506486|ref|YP_004382914.1| - 0.00019 21.5 0.2 0.0018 18.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|330506486|ref|YP_004382914.1| - 0.0014 19.4 0.3 0.0024 18.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|330506486|ref|YP_004382914.1| - 0.002 17.8 0.4 0.012 15.3 0.3 2.0 1 1 0 1 1 1 1 Archaeal ATPase MobB PF03205.9 gi|330506486|ref|YP_004382914.1| - 0.0023 17.6 0.0 0.0067 16.1 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|330506486|ref|YP_004382914.1| - 0.0033 16.8 0.0 0.0081 15.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|330506486|ref|YP_004382914.1| - 0.01 15.0 0.1 0.03 13.5 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function, DUF258 NTPase_1 PF03266.10 gi|330506486|ref|YP_004382914.1| - 0.01 15.5 1.0 2.3 7.8 0.0 2.2 2 0 0 2 2 2 0 NTPase ArgK PF03308.11 gi|330506486|ref|YP_004382914.1| - 0.013 14.3 0.2 0.031 13.0 0.0 1.7 2 0 0 2 2 2 0 ArgK protein AAA_18 PF13238.1 gi|330506486|ref|YP_004382914.1| - 0.017 15.4 0.8 0.064 13.5 0.3 2.1 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|330506486|ref|YP_004382914.1| - 0.02 14.8 0.9 0.05 13.5 0.3 2.3 2 1 0 2 2 1 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|330506486|ref|YP_004382914.1| - 0.048 12.5 0.0 0.087 11.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_2 PF07724.9 gi|330506486|ref|YP_004382914.1| - 0.049 13.5 0.0 0.15 11.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) NB-ARC PF00931.17 gi|330506486|ref|YP_004382914.1| - 0.059 12.2 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|330506486|ref|YP_004382914.1| - 0.062 13.1 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|330506486|ref|YP_004382914.1| - 0.086 12.6 0.0 0.22 11.2 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_5 PF07728.9 gi|330506486|ref|YP_004382914.1| - 0.098 12.3 0.2 4.7 6.9 0.0 2.5 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|330506486|ref|YP_004382914.1| - 0.099 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain ATP_bind_1 PF03029.12 gi|330506486|ref|YP_004382914.1| - 0.13 11.7 0.1 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.24 gi|330506486|ref|YP_004382914.1| - 0.14 12.3 1.7 3 8.0 1.2 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|330506486|ref|YP_004382914.1| - 0.21 10.5 0.0 0.21 10.5 0.0 1.5 2 0 0 2 2 1 0 AAA ATPase domain cobW PF02492.14 gi|330506487|ref|YP_004382915.1| - 8e-12 44.9 0.0 1.1e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|330506487|ref|YP_004382915.1| - 4e-05 23.2 0.3 8.7e-05 22.2 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|330506487|ref|YP_004382915.1| - 0.0014 17.7 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|330506487|ref|YP_004382915.1| - 0.0016 18.4 0.0 0.0031 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|330506487|ref|YP_004382915.1| - 0.0042 16.7 0.0 0.0069 16.0 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|330506487|ref|YP_004382915.1| - 0.006 16.8 0.0 0.01 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|330506487|ref|YP_004382915.1| - 0.0063 15.5 0.0 0.008 15.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) UvrD-helicase PF00580.16 gi|330506487|ref|YP_004382915.1| - 0.016 14.4 0.3 0.022 14.0 0.2 1.1 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain ArgK PF03308.11 gi|330506487|ref|YP_004382915.1| - 0.026 13.3 0.1 0.091 11.5 0.1 1.8 2 0 0 2 2 2 0 ArgK protein AAA_22 PF13401.1 gi|330506487|ref|YP_004382915.1| - 0.029 14.4 0.0 0.055 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|330506487|ref|YP_004382915.1| - 0.061 12.7 0.0 0.081 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain DUF917 PF06032.7 gi|330506487|ref|YP_004382915.1| - 0.072 11.6 0.0 0.094 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF917) FtsK_SpoIIIE PF01580.13 gi|330506487|ref|YP_004382915.1| - 0.074 12.5 0.1 0.1 12.0 0.1 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family Viral_helicase1 PF01443.13 gi|330506487|ref|YP_004382915.1| - 0.076 12.5 0.1 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.1 gi|330506487|ref|YP_004382915.1| - 0.081 12.4 0.2 0.13 11.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|330506487|ref|YP_004382915.1| - 0.084 12.0 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_5 PF07728.9 gi|330506487|ref|YP_004382915.1| - 0.084 12.5 0.0 0.18 11.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|330506487|ref|YP_004382915.1| - 0.095 13.5 0.3 0.16 12.8 0.2 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|330506487|ref|YP_004382915.1| - 0.13 11.9 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Zot PF05707.7 gi|330506487|ref|YP_004382915.1| - 0.16 11.4 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) FeS PF04060.8 gi|330506488|ref|YP_004382916.1| - 2.7e-11 42.8 0.6 2.7e-11 42.8 0.4 2.0 2 0 0 2 2 2 1 Putative Fe-S cluster HI0933_like PF03486.9 gi|330506491|ref|YP_004382919.1| - 1.2e-114 382.9 0.0 1.4e-114 382.7 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|330506491|ref|YP_004382919.1| - 4.8e-08 33.3 0.0 6.7e-07 29.5 0.0 2.5 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|330506491|ref|YP_004382919.1| - 9.7e-06 25.5 0.1 0.0001 22.2 0.0 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|330506491|ref|YP_004382919.1| - 4.6e-05 22.4 0.1 0.0039 16.0 0.0 2.8 2 1 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|330506491|ref|YP_004382919.1| - 0.00031 20.7 0.0 0.00082 19.3 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|330506491|ref|YP_004382919.1| - 0.00048 19.0 0.0 0.49 9.1 0.0 2.6 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|330506491|ref|YP_004382919.1| - 0.0055 16.4 0.0 0.054 13.2 0.0 2.2 1 1 0 1 1 1 1 FAD-NAD(P)-binding Thi4 PF01946.12 gi|330506491|ref|YP_004382919.1| - 0.0083 15.2 0.0 0.017 14.2 0.0 1.4 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|330506491|ref|YP_004382919.1| - 0.042 12.7 0.0 0.36 9.6 0.0 2.1 1 1 1 3 3 3 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|330506491|ref|YP_004382919.1| - 0.07 12.0 0.0 0.099 11.5 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein TPR_1 PF00515.23 gi|330506492|ref|YP_004382920.1| - 4.1e-26 89.4 8.5 3.9e-09 35.7 0.1 4.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330506492|ref|YP_004382920.1| - 1e-23 82.7 6.8 1.6e-16 59.6 0.4 2.3 1 1 0 2 2 2 2 TPR repeat TPR_2 PF07719.12 gi|330506492|ref|YP_004382920.1| - 3.5e-20 70.2 5.4 5.4e-07 29.0 0.1 3.9 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330506492|ref|YP_004382920.1| - 9.2e-16 58.0 0.5 2.4e-07 31.2 0.0 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330506492|ref|YP_004382920.1| - 8.6e-15 53.3 2.6 1e-05 24.9 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330506492|ref|YP_004382920.1| - 9.1e-15 53.5 3.1 1.7e-05 24.6 0.2 4.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330506492|ref|YP_004382920.1| - 4.4e-11 42.9 0.9 5.8e-05 23.3 0.0 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330506492|ref|YP_004382920.1| - 6.7e-11 41.8 0.0 0.0051 17.3 0.0 3.5 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330506492|ref|YP_004382920.1| - 2.5e-10 40.1 0.1 2.8e-05 23.9 0.0 2.7 1 1 2 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|330506492|ref|YP_004382920.1| - 4.3e-08 33.1 8.2 2e-05 24.6 1.5 2.1 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|330506492|ref|YP_004382920.1| - 2.7e-06 27.1 0.2 0.0071 16.1 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330506492|ref|YP_004382920.1| - 0.00072 19.3 1.9 0.23 11.3 0.0 3.1 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.1 gi|330506492|ref|YP_004382920.1| - 0.0033 17.1 0.1 1.3 8.9 0.0 3.2 4 0 0 4 4 4 1 Tetratricopeptide repeat BTAD PF03704.12 gi|330506492|ref|YP_004382920.1| - 0.0043 17.3 0.1 0.015 15.6 0.1 1.8 1 1 0 1 1 1 1 Bacterial transcriptional activator domain DUF3856 PF12968.2 gi|330506492|ref|YP_004382920.1| - 0.0061 16.3 0.2 3 7.6 0.0 2.9 1 1 0 2 2 2 1 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|330506492|ref|YP_004382920.1| - 0.017 13.8 0.3 0.2 10.3 0.3 2.1 1 1 1 2 2 2 0 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|330506492|ref|YP_004382920.1| - 0.022 14.6 0.9 0.16 11.8 0.0 2.4 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain FAT PF02259.18 gi|330506492|ref|YP_004382920.1| - 0.056 12.4 1.0 0.94 8.3 0.0 2.0 1 1 0 2 2 2 0 FAT domain YfiO PF13525.1 gi|330506492|ref|YP_004382920.1| - 0.077 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Outer membrane lipoprotein TPR_6 PF13174.1 gi|330506492|ref|YP_004382920.1| - 0.11 12.9 0.6 75 4.1 0.0 3.6 4 0 0 4 4 4 0 Tetratricopeptide repeat IF-2B PF01008.12 gi|330506493|ref|YP_004382921.1| - 5.9e-83 278.1 7.2 6.7e-83 277.9 5.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family HTH_WhiA PF02650.9 gi|330506493|ref|YP_004382921.1| - 3.6 8.0 5.2 5.1 7.5 0.1 2.9 3 0 0 3 3 3 0 WhiA C-terminal HTH domain PurS PF02700.9 gi|330506494|ref|YP_004382922.1| - 3.2e-10 39.8 0.3 1e-05 25.3 0.0 2.1 2 0 0 2 2 2 2 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.1 gi|330506495|ref|YP_004382923.1| - 1.9e-54 184.3 0.0 2.2e-54 184.0 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|330506495|ref|YP_004382923.1| - 2.1e-10 40.4 0.0 3.7e-10 39.5 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|330506495|ref|YP_004382923.1| - 1.4e-07 31.0 0.0 2.6e-07 30.2 0.0 1.5 1 1 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|330506495|ref|YP_004382923.1| - 1.6e-07 31.0 0.0 8e-07 28.7 0.0 2.1 2 1 1 3 3 3 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|330506495|ref|YP_004382923.1| - 1.6e-05 24.2 0.0 2.8e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Putative amidotransferase SNO PF01174.14 gi|330506495|ref|YP_004382923.1| - 0.00039 20.0 0.0 0.00093 18.8 0.0 1.6 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|330506495|ref|YP_004382923.1| - 0.0011 18.4 0.0 0.0021 17.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase C26 AIRS_C PF02769.17 gi|330506496|ref|YP_004382924.1| - 2.4e-38 131.5 0.2 6.4e-21 74.9 0.0 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|330506496|ref|YP_004382924.1| - 9.4e-31 105.9 0.9 1.8e-17 63.3 0.2 2.7 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain 2TM PF13239.1 gi|330506497|ref|YP_004382925.1| - 2.1e-10 40.5 2.4 2.3e-10 40.3 1.7 1.1 1 0 0 1 1 1 1 2TM domain PEMT PF04191.8 gi|330506498|ref|YP_004382926.1| - 0.011 15.8 2.4 0.014 15.5 0.8 1.9 1 1 0 1 1 1 0 Phospholipid methyltransferase Pyridox_ox_2 PF12900.2 gi|330506499|ref|YP_004382927.1| - 9.3e-19 67.6 0.0 1.1e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|330506499|ref|YP_004382927.1| - 1e-05 25.4 0.0 1.5e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FAD_binding_7 PF03441.9 gi|330506500|ref|YP_004382928.1| - 7.8e-36 123.6 0.4 1.4e-34 119.6 0.3 2.1 1 1 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|330506500|ref|YP_004382928.1| - 2.6e-28 98.8 0.0 4.3e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 DNA photolyase DEDD_Tnp_IS110 PF01548.12 gi|330506501|ref|YP_004382929.1| - 4.3e-25 88.0 0.1 1.1e-24 86.7 0.0 1.7 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.11 gi|330506501|ref|YP_004382929.1| - 1.3e-24 86.0 0.0 2.9e-24 85.0 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family YfkB PF08756.5 gi|330506501|ref|YP_004382929.1| - 0.035 13.6 0.0 0.095 12.2 0.0 1.7 1 0 0 1 1 1 0 YfkB-like domain Nitroreductase PF00881.19 gi|330506502|ref|YP_004382930.1| - 1.5e-09 37.8 0.3 0.0075 16.1 0.0 3.3 2 2 1 3 3 3 3 Nitroreductase family TM1586_NiRdase PF14512.1 gi|330506502|ref|YP_004382930.1| - 0.016 14.4 0.1 0.071 12.2 0.0 2.0 2 1 0 2 2 2 0 Putative TM nitroreductase DUF385 PF04075.9 gi|330506506|ref|YP_004382934.1| - 8.5e-12 45.1 0.0 1.2e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF385) SoxZ PF08770.6 gi|330506507|ref|YP_004382935.1| - 0.0034 16.7 0.0 0.004 16.5 0.0 1.2 1 0 0 1 1 1 1 Sulphur oxidation protein SoxZ DUF4466 PF14725.1 gi|330506507|ref|YP_004382935.1| - 0.011 14.9 0.1 0.012 14.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4466) Desulfoferrodox PF01880.13 gi|330506507|ref|YP_004382935.1| - 0.029 14.6 0.0 0.035 14.3 0.0 1.1 1 0 0 1 1 1 0 Desulfoferrodoxin TGT_C2 PF14810.1 gi|330506508|ref|YP_004382936.1| - 2.3e-25 88.2 0.0 4.2e-25 87.3 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|330506508|ref|YP_004382936.1| - 7.8e-18 63.9 0.2 1.3e-17 63.2 0.1 1.3 1 0 0 1 1 1 1 PUA domain DUF2388 PF09498.5 gi|330506508|ref|YP_004382936.1| - 0.067 12.8 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2388) Microvir_lysis PF04517.7 gi|330506508|ref|YP_004382936.1| - 0.092 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Microvirus lysis protein (E), C terminus SHMT PF00464.14 gi|330506509|ref|YP_004382937.1| - 2.2e-164 546.5 0.2 2.7e-164 546.3 0.1 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|330506509|ref|YP_004382937.1| - 3.4e-08 32.8 0.0 4.8e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|330506509|ref|YP_004382937.1| - 8.9e-08 31.6 0.0 1.4e-07 30.9 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|330506509|ref|YP_004382937.1| - 0.00053 18.3 0.0 0.00078 17.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|330506509|ref|YP_004382937.1| - 0.0087 15.1 0.2 0.016 14.2 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family THF_DHG_CYH_C PF02882.14 gi|330506510|ref|YP_004382938.1| - 5.6e-65 217.3 0.9 8.9e-65 216.6 0.6 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|330506510|ref|YP_004382938.1| - 7.8e-37 125.8 0.0 1.3e-36 125.1 0.0 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain OCD_Mu_crystall PF02423.10 gi|330506510|ref|YP_004382938.1| - 0.068 11.9 0.1 0.1 11.3 0.1 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Ldh_1_N PF00056.18 gi|330506510|ref|YP_004382938.1| - 0.1 12.4 0.5 7 6.4 0.0 2.3 1 1 1 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DUF2121 PF09894.4 gi|330506511|ref|YP_004382939.1| - 2e-41 141.4 0.1 2.3e-41 141.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) DUF3992 PF13157.1 gi|330506511|ref|YP_004382939.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3992) NTP_transf_3 PF12804.2 gi|330506512|ref|YP_004382940.1| - 8.7e-28 97.4 0.2 1.2e-27 96.9 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|330506512|ref|YP_004382940.1| - 0.00012 21.7 0.0 0.00025 20.7 0.0 1.5 2 0 0 2 2 2 1 Cytidylyltransferase IspD PF01128.14 gi|330506512|ref|YP_004382940.1| - 0.019 14.4 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase tRNA-synt_1b PF00579.20 gi|330506513|ref|YP_004382941.1| - 6.8e-54 182.9 0.0 7.8e-54 182.7 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|330506513|ref|YP_004382941.1| - 0.035 12.7 0.0 0.48 9.0 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (K) EPSP_synthase PF00275.15 gi|330506514|ref|YP_004382942.1| - 3.7e-108 361.6 0.0 4.4e-108 361.3 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PIN PF01850.16 gi|330506515|ref|YP_004382943.1| - 2.1e-15 57.1 0.1 2.4e-15 56.9 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|330506516|ref|YP_004382944.1| - 6.3e-19 68.0 3.7 6.8e-19 67.8 2.6 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 PAPA-1 PF04795.7 gi|330506516|ref|YP_004382944.1| - 0.0096 16.6 2.0 0.016 15.8 1.4 1.5 1 1 0 1 1 1 1 PAPA-1-like conserved region SeqA PF03925.8 gi|330506516|ref|YP_004382944.1| - 0.15 11.7 0.6 0.17 11.5 0.4 1.0 1 0 0 1 1 1 0 SeqA protein RHH_3 PF12651.2 gi|330506516|ref|YP_004382944.1| - 0.41 10.4 2.3 6.5 6.5 0.1 2.7 3 1 0 3 3 3 0 Ribbon-helix-helix domain ADP_PFK_GK PF04587.10 gi|330506517|ref|YP_004382945.1| - 6.3e-52 176.2 0.0 7.6e-52 176.0 0.0 1.1 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region DUF2117 PF09890.4 gi|330506518|ref|YP_004382946.1| - 3e-53 180.2 0.1 4.2e-53 179.7 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) DUF2098 PF09871.4 gi|330506519|ref|YP_004382947.1| - 3.7e-24 84.4 1.3 4e-24 84.3 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) HypA PF01155.14 gi|330506521|ref|YP_004382949.1| - 0.00066 19.3 0.8 0.00073 19.1 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|330506521|ref|YP_004382949.1| - 0.001 18.9 3.8 0.0026 17.6 2.6 1.7 1 1 0 1 1 1 1 Zinc ribbon domain TFIIS_C PF01096.13 gi|330506521|ref|YP_004382949.1| - 0.012 15.1 3.0 0.85 9.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) FYDLN_acid PF09538.5 gi|330506521|ref|YP_004382949.1| - 0.035 14.6 0.6 0.04 14.4 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Zn_Tnp_IS1595 PF12760.2 gi|330506521|ref|YP_004382949.1| - 0.043 13.6 0.8 1.5 8.6 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|330506521|ref|YP_004382949.1| - 0.066 13.2 0.4 5.3 7.1 0.1 2.2 2 0 0 2 2 2 0 zinc-finger FYVE PF01363.16 gi|330506521|ref|YP_004382949.1| - 0.073 12.9 0.6 0.091 12.6 0.4 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-LYAR PF08790.6 gi|330506521|ref|YP_004382949.1| - 0.083 12.6 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 LYAR-type C2HC zinc finger Molybdopterin PF00384.17 gi|330506522|ref|YP_004382950.1| - 1e-16 60.7 0.0 6.6e-16 58.0 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|330506523|ref|YP_004382951.1| - 2.5e-12 46.5 0.0 3.2e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DRTGG PF07085.7 gi|330506523|ref|YP_004382951.1| - 0.03 13.9 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 DRTGG domain GXGXG PF01493.14 gi|330506524|ref|YP_004382952.1| - 1.4e-35 122.1 23.2 6.7e-35 119.9 15.7 2.1 1 1 0 1 1 1 1 GXGXG motif Amidohydro_3 PF07969.6 gi|330506525|ref|YP_004382953.1| - 1.1e-70 238.8 2.1 1.3e-70 238.6 1.4 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|330506525|ref|YP_004382953.1| - 4.1e-11 42.5 0.9 9e-11 41.4 0.1 2.0 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|330506525|ref|YP_004382953.1| - 0.0002 21.4 0.5 0.0061 16.6 0.0 2.3 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|330506525|ref|YP_004382953.1| - 0.00061 19.5 0.7 0.67 9.5 0.1 2.3 2 1 0 2 2 2 2 Amidohydrolase family Fer4 PF00037.22 gi|330506526|ref|YP_004382954.1| - 9.9e-48 157.9 83.2 1.3e-09 37.2 1.5 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330506526|ref|YP_004382954.1| - 7.2e-36 122.3 129.9 1.4e-09 38.1 11.2 5.9 3 2 5 8 8 8 8 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330506526|ref|YP_004382954.1| - 2.5e-32 110.9 64.8 1.6e-08 34.6 7.9 5.7 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330506526|ref|YP_004382954.1| - 6.7e-32 109.0 61.8 1.8e-09 37.2 2.8 6.2 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330506526|ref|YP_004382954.1| - 3.4e-31 105.7 84.6 6.8e-06 25.7 0.8 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330506526|ref|YP_004382954.1| - 5.8e-29 100.6 58.2 5.8e-08 33.3 5.5 7.0 6 2 1 7 7 7 7 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|330506526|ref|YP_004382954.1| - 2.3e-26 90.0 81.4 3.4e-06 26.6 1.5 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330506526|ref|YP_004382954.1| - 1.7e-24 85.4 71.3 8.4e-07 28.7 5.0 6.8 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330506526|ref|YP_004382954.1| - 2.4e-24 85.1 63.2 6.5e-08 32.4 2.7 5.3 2 1 4 6 6 6 6 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330506526|ref|YP_004382954.1| - 9e-17 59.8 84.1 0.00078 19.5 2.7 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330506526|ref|YP_004382954.1| - 6.2e-16 58.5 65.1 0.00013 22.2 5.6 6.4 2 2 6 8 8 8 8 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330506526|ref|YP_004382954.1| - 1.3e-15 57.5 68.1 0.0019 18.5 0.5 8.1 6 2 2 8 8 8 7 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330506526|ref|YP_004382954.1| - 1.2e-14 54.6 58.8 0.011 16.2 0.5 8.4 8 0 0 8 8 8 8 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|330506526|ref|YP_004382954.1| - 9.6e-09 35.1 116.9 0.0096 16.4 5.1 8.5 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330506526|ref|YP_004382954.1| - 2.5e-05 24.5 84.7 0.058 13.7 1.7 8.3 8 0 0 8 8 8 6 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|330506526|ref|YP_004382954.1| - 0.00012 21.8 45.0 0.0017 18.2 8.7 5.7 2 2 2 5 5 5 2 4Fe-4S dicluster domain ThiS PF02597.15 gi|330506527|ref|YP_004382955.1| - 1.7e-05 25.1 0.1 2e-05 24.9 0.1 1.1 1 0 0 1 1 1 1 ThiS family Phage_Mu_Gp45 PF06890.7 gi|330506527|ref|YP_004382955.1| - 0.044 13.2 0.0 0.052 12.9 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage Mu Gp45 protein ThiF PF00899.16 gi|330506528|ref|YP_004382956.1| - 4.5e-43 146.3 0.0 6.1e-43 145.9 0.0 1.1 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|330506528|ref|YP_004382956.1| - 6.3e-18 64.1 0.2 1.2e-17 63.3 0.1 1.5 1 0 0 1 1 1 1 MoeZ/MoeB domain 3HCDH_N PF02737.13 gi|330506528|ref|YP_004382956.1| - 0.037 13.6 0.0 0.054 13.1 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|330506528|ref|YP_004382956.1| - 0.048 13.2 0.1 2.8 7.4 0.0 2.1 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Shikimate_DH PF01488.15 gi|330506528|ref|YP_004382956.1| - 0.079 13.0 0.1 0.13 12.3 0.1 1.4 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DUF1890 PF09001.6 gi|330506529|ref|YP_004382957.1| - 1.1e-44 151.8 0.2 1.2e-44 151.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) DUF1894 PF08979.6 gi|330506530|ref|YP_004382958.1| - 9.7e-29 99.2 0.1 1.3e-28 98.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) OMPdecase PF00215.19 gi|330506530|ref|YP_004382958.1| - 0.055 12.8 0.0 3.3 7.0 0.0 2.0 2 0 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family V-ATPase_G PF03179.10 gi|330506530|ref|YP_004382958.1| - 1.2 9.4 7.1 0.21 11.9 2.6 1.4 2 0 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit ThiS PF02597.15 gi|330506531|ref|YP_004382959.1| - 4.5e-15 55.8 0.0 5.1e-15 55.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|330506531|ref|YP_004382959.1| - 0.07 12.9 0.0 0.078 12.8 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I Med10 PF09748.4 gi|330506531|ref|YP_004382959.1| - 0.12 12.1 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex MoaE PF02391.12 gi|330506532|ref|YP_004382960.1| - 2.6e-29 101.4 2.6 3.1e-29 101.1 1.8 1.1 1 0 0 1 1 1 1 MoaE protein CutA1 PF03091.10 gi|330506533|ref|YP_004382961.1| - 1.4e-33 114.5 0.1 1.5e-33 114.4 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Abhydrolase_6 PF12697.2 gi|330506535|ref|YP_004382963.1| - 7.9e-33 114.2 1.5 1.1e-32 113.7 1.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|330506535|ref|YP_004382963.1| - 6.3e-21 74.9 0.3 3.7e-17 62.6 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|330506535|ref|YP_004382963.1| - 1.5e-16 60.4 0.1 1.9e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Ser_hydrolase PF06821.8 gi|330506535|ref|YP_004382963.1| - 9.6e-06 25.2 0.0 2e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 Serine hydrolase Ndr PF03096.9 gi|330506535|ref|YP_004382963.1| - 0.00023 19.7 0.0 0.0005 18.6 0.0 1.5 2 0 0 2 2 2 1 Ndr family DUF676 PF05057.9 gi|330506535|ref|YP_004382963.1| - 0.003 16.8 0.0 0.0057 15.9 0.0 1.4 1 0 0 1 1 1 1 Putative serine esterase (DUF676) Hydrolase_4 PF12146.3 gi|330506535|ref|YP_004382963.1| - 0.019 14.7 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase Lipase_3 PF01764.20 gi|330506535|ref|YP_004382963.1| - 0.02 14.4 0.0 0.042 13.4 0.0 1.6 2 0 0 2 2 2 0 Lipase (class 3) Esterase PF00756.15 gi|330506535|ref|YP_004382963.1| - 0.038 13.4 0.0 0.054 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Abhydrolase_3 PF07859.8 gi|330506535|ref|YP_004382963.1| - 0.051 13.1 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|330506535|ref|YP_004382963.1| - 0.077 12.2 0.0 0.92 8.6 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family DUF915 PF06028.6 gi|330506535|ref|YP_004382963.1| - 0.2 10.6 0.0 1.1 8.2 0.0 1.9 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) PGAP1 PF07819.8 gi|330506535|ref|YP_004382963.1| - 0.23 11.0 0.7 3.2 7.2 0.5 2.1 1 1 0 1 1 1 0 PGAP1-like protein F420_oxidored PF03807.12 gi|330506536|ref|YP_004382964.1| - 6.1e-21 74.6 0.1 1.6e-20 73.2 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent P5CR_dimer PF14748.1 gi|330506536|ref|YP_004382964.1| - 2.4e-16 59.6 0.5 4.7e-16 58.7 0.3 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation NAD_binding_2 PF03446.10 gi|330506536|ref|YP_004382964.1| - 1.2e-08 34.9 0.0 2e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|330506536|ref|YP_004382964.1| - 4.4e-06 26.8 0.0 1.2e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|330506536|ref|YP_004382964.1| - 0.0014 17.7 0.0 0.0019 17.2 0.0 1.3 1 1 0 1 1 1 1 Saccharopine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|330506536|ref|YP_004382964.1| - 0.0022 17.7 0.5 0.025 14.3 0.2 2.4 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|330506536|ref|YP_004382964.1| - 0.0041 16.2 0.0 0.0092 15.1 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|330506536|ref|YP_004382964.1| - 0.014 15.8 0.0 0.03 14.8 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Rossmann-like PF10727.4 gi|330506536|ref|YP_004382964.1| - 0.023 14.3 0.1 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 Rossmann-like domain ApbA PF02558.11 gi|330506536|ref|YP_004382964.1| - 0.03 13.7 0.2 0.084 12.3 0.1 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AAA PF00004.24 gi|330506537|ref|YP_004382965.1| - 8.5e-100 330.1 0.0 3.1e-49 166.5 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|330506537|ref|YP_004382965.1| - 1.7e-28 98.3 0.4 9e-28 96.0 0.1 2.4 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|330506537|ref|YP_004382965.1| - 1.6e-16 60.6 0.0 1.1e-07 31.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|330506537|ref|YP_004382965.1| - 8.6e-16 57.6 0.1 2.5e-08 33.2 0.0 2.7 2 1 1 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|330506537|ref|YP_004382965.1| - 3.2e-15 56.5 0.0 2.8e-06 27.4 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_5 PF07728.9 gi|330506537|ref|YP_004382965.1| - 6.5e-15 55.0 0.8 1.1e-06 28.4 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|330506537|ref|YP_004382965.1| - 1.1e-13 51.3 0.7 0.00016 21.8 0.1 4.0 2 2 0 3 3 3 2 AAA domain AAA_33 PF13671.1 gi|330506537|ref|YP_004382965.1| - 3.4e-13 49.6 0.0 1.3e-05 25.0 0.0 3.3 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|330506537|ref|YP_004382965.1| - 5e-12 46.6 0.1 8.8e-05 23.3 0.0 3.1 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|330506537|ref|YP_004382965.1| - 2.7e-11 42.8 0.0 0.00012 21.0 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus CDC48_2 PF02933.12 gi|330506537|ref|YP_004382965.1| - 2.6e-10 39.7 0.2 2.1e-09 36.9 0.0 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.1 gi|330506537|ref|YP_004382965.1| - 2.8e-10 40.1 0.0 0.0011 18.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|330506537|ref|YP_004382965.1| - 1e-09 37.8 0.0 0.00023 20.3 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|330506537|ref|YP_004382965.1| - 1.5e-09 37.5 0.0 0.0011 18.4 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|330506537|ref|YP_004382965.1| - 8.8e-09 35.5 0.0 0.0021 18.2 0.0 2.8 3 0 0 3 3 2 2 RNA helicase Mg_chelatase PF01078.16 gi|330506537|ref|YP_004382965.1| - 1.5e-08 34.0 0.0 0.0037 16.4 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|330506537|ref|YP_004382965.1| - 1.9e-08 34.4 0.1 0.002 18.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|330506537|ref|YP_004382965.1| - 1.9e-08 33.9 7.8 0.12 11.7 0.2 4.5 2 2 1 4 4 4 3 AAA domain AAA_18 PF13238.1 gi|330506537|ref|YP_004382965.1| - 3.3e-08 33.9 0.4 0.0031 17.8 0.0 3.0 3 1 0 3 3 2 2 AAA domain AAA_19 PF13245.1 gi|330506537|ref|YP_004382965.1| - 4.5e-08 32.7 2.3 0.0074 16.0 0.1 3.0 3 0 0 3 3 2 2 Part of AAA domain Sigma54_activat PF00158.21 gi|330506537|ref|YP_004382965.1| - 1.4e-07 31.0 0.1 0.022 14.2 0.0 3.9 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|330506537|ref|YP_004382965.1| - 1.7e-07 31.0 0.1 0.015 14.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|330506537|ref|YP_004382965.1| - 1.8e-07 31.0 0.3 0.088 12.4 0.0 3.8 3 1 0 3 3 3 2 NACHT domain Arch_ATPase PF01637.13 gi|330506537|ref|YP_004382965.1| - 7e-07 29.1 0.0 0.014 15.0 0.0 2.6 2 0 0 2 2 2 2 Archaeal ATPase Bac_DnaA PF00308.13 gi|330506537|ref|YP_004382965.1| - 8.7e-07 28.7 0.0 0.027 14.1 0.0 2.6 2 1 0 2 2 2 2 Bacterial dnaA protein AAA_3 PF07726.6 gi|330506537|ref|YP_004382965.1| - 1.2e-06 28.2 0.0 0.031 13.8 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|330506537|ref|YP_004382965.1| - 1.2e-06 28.6 0.0 0.046 13.7 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|330506537|ref|YP_004382965.1| - 4.2e-06 27.0 0.0 0.11 12.7 0.0 2.7 2 0 0 2 2 2 2 ABC transporter KaiC PF06745.8 gi|330506537|ref|YP_004382965.1| - 4.7e-06 25.8 0.7 0.44 9.6 0.0 3.5 2 1 1 3 3 3 2 KaiC DUF815 PF05673.8 gi|330506537|ref|YP_004382965.1| - 6.1e-06 25.3 0.0 0.028 13.3 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) PhoH PF02562.11 gi|330506537|ref|YP_004382965.1| - 7.1e-06 25.3 0.0 0.078 12.2 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.12 gi|330506537|ref|YP_004382965.1| - 1.7e-05 23.8 0.1 0.16 10.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 KAP_NTPase PF07693.9 gi|330506537|ref|YP_004382965.1| - 3e-05 23.1 0.1 0.84 8.5 0.0 3.8 2 2 2 4 4 4 1 KAP family P-loop domain NB-ARC PF00931.17 gi|330506537|ref|YP_004382965.1| - 0.00015 20.7 0.0 0.38 9.5 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain UPF0079 PF02367.12 gi|330506537|ref|YP_004382965.1| - 0.00016 21.3 0.0 0.58 9.7 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 DUF2075 PF09848.4 gi|330506537|ref|YP_004382965.1| - 0.00029 19.9 0.0 0.25 10.2 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|330506537|ref|YP_004382965.1| - 0.00069 19.2 0.0 0.89 9.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AFG1_ATPase PF03969.11 gi|330506537|ref|YP_004382965.1| - 0.00076 18.3 0.0 0.26 10.0 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase T2SE PF00437.15 gi|330506537|ref|YP_004382965.1| - 0.001 18.0 0.0 0.5 9.2 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|330506537|ref|YP_004382965.1| - 0.0011 18.5 0.0 0.95 9.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain Guanylate_kin PF00625.16 gi|330506537|ref|YP_004382965.1| - 0.0015 18.0 0.2 4.3 6.7 0.0 3.7 2 2 2 4 4 3 0 Guanylate kinase NTPase_1 PF03266.10 gi|330506537|ref|YP_004382965.1| - 0.0061 16.2 5.3 1.1 9.0 0.0 4.4 3 2 1 4 4 4 1 NTPase KTI12 PF08433.5 gi|330506537|ref|YP_004382965.1| - 0.012 14.7 0.0 2.7 7.1 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 ResIII PF04851.10 gi|330506537|ref|YP_004382965.1| - 0.013 15.3 0.0 3 7.6 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit SKI PF01202.17 gi|330506537|ref|YP_004382965.1| - 0.014 15.2 0.1 6.5 6.6 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Viral_helicase1 PF01443.13 gi|330506537|ref|YP_004382965.1| - 0.015 14.8 0.0 0.46 9.9 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Vps4_C PF09336.5 gi|330506537|ref|YP_004382965.1| - 0.015 15.1 0.0 1.8 8.5 0.0 3.0 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain ATP-synt_ab PF00006.20 gi|330506537|ref|YP_004382965.1| - 0.016 14.7 0.0 1.9 7.9 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|330506537|ref|YP_004382965.1| - 0.016 14.6 0.0 7.9 5.8 0.0 2.8 2 1 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|330506537|ref|YP_004382965.1| - 0.017 15.4 0.1 6.9 6.9 0.0 2.8 2 1 1 3 3 2 0 AAA domain SRPRB PF09439.5 gi|330506537|ref|YP_004382965.1| - 0.02 14.1 0.0 2.3 7.3 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PPV_E1_C PF00519.12 gi|330506537|ref|YP_004382965.1| - 0.02 13.5 0.0 0.74 8.3 0.0 2.1 2 0 0 2 2 2 0 Papillomavirus helicase IPT PF01745.11 gi|330506537|ref|YP_004382965.1| - 0.03 13.4 0.1 7 5.7 0.0 2.5 2 0 0 2 2 2 0 Isopentenyl transferase AAA_29 PF13555.1 gi|330506537|ref|YP_004382965.1| - 0.036 13.5 0.0 8.2 6.0 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain PIF1 PF05970.9 gi|330506537|ref|YP_004382965.1| - 0.042 12.8 0.0 6.4 5.6 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase CPT PF07931.7 gi|330506537|ref|YP_004382965.1| - 0.049 13.2 0.0 5.8 6.4 0.0 2.7 2 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein DAP3 PF10236.4 gi|330506537|ref|YP_004382965.1| - 0.054 12.4 0.0 2.2 7.1 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 PduV-EutP PF10662.4 gi|330506537|ref|YP_004382965.1| - 0.077 12.4 0.0 9.9 5.6 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|330506537|ref|YP_004382965.1| - 0.082 12.3 0.5 15 4.9 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_21 PF13304.1 gi|330506537|ref|YP_004382965.1| - 0.098 12.5 0.9 12 5.7 0.2 3.2 2 1 0 2 2 2 0 AAA domain Zot PF05707.7 gi|330506537|ref|YP_004382965.1| - 0.15 11.5 1.7 58 3.0 0.1 4.1 2 2 0 2 2 2 0 Zonular occludens toxin (Zot) HhH-GPD PF00730.20 gi|330506538|ref|YP_004382966.1| - 0.026 14.8 0.1 0.039 14.2 0.1 1.3 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein DUF4635 PF15466.1 gi|330506538|ref|YP_004382966.1| - 0.17 11.1 1.2 0.36 10.1 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4635) Mrr_cat_2 PF13156.1 gi|330506539|ref|YP_004382967.1| - 0.052 13.4 0.0 0.068 13.0 0.0 1.1 1 0 0 1 1 1 0 Restriction endonuclease DDE_Tnp_1 PF01609.16 gi|330506541|ref|YP_004382969.1| - 8.6e-07 28.7 0.8 3.1e-06 26.9 0.5 1.8 1 1 0 1 1 1 1 Transposase DDE domain Glyoxalase PF00903.20 gi|330506542|ref|YP_004382970.1| - 3.5e-15 56.1 0.0 3.9e-15 55.9 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|330506542|ref|YP_004382970.1| - 4.3e-13 49.8 0.0 5.1e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|330506542|ref|YP_004382970.1| - 4.4e-06 26.6 0.1 0.00031 20.7 0.0 1.6 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_5 PF14696.1 gi|330506542|ref|YP_004382970.1| - 0.059 13.2 0.0 0.073 12.9 0.0 1.2 1 0 0 1 1 1 0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal S-layer PF07752.6 gi|330506543|ref|YP_004382971.1| - 1.5e-33 116.1 1.4 2e-15 56.7 0.1 3.0 1 1 2 3 3 3 3 S-layer protein CIDE-N PF02017.10 gi|330506543|ref|YP_004382971.1| - 0.044 13.5 0.0 0.77 9.5 0.0 2.2 2 0 0 2 2 2 0 CIDE-N domain TIMP PF00965.12 gi|330506543|ref|YP_004382971.1| - 0.079 12.5 0.1 4.7 6.7 0.1 2.5 2 1 1 3 3 3 0 Tissue inhibitor of metalloproteinase dUTPase PF00692.14 gi|330506544|ref|YP_004382972.1| - 6.1e-09 35.4 0.0 6.9e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 dUTPase Abi PF02517.11 gi|330506545|ref|YP_004382973.1| - 4.2e-10 39.6 6.9 4.2e-10 39.6 4.8 2.4 4 0 0 4 4 4 1 CAAX protease self-immunity PsbX PF06596.6 gi|330506545|ref|YP_004382973.1| - 0.041 13.5 0.5 0.041 13.5 0.3 3.3 3 0 0 3 3 3 0 Photosystem II reaction centre X protein (PsbX) ETRAMP PF09716.5 gi|330506546|ref|YP_004382974.1| - 0.05 13.5 0.6 0.13 12.2 0.1 1.9 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Peptidase_C11 PF03415.9 gi|330506547|ref|YP_004382975.1| - 6.9e-26 91.1 0.0 6.6e-20 71.4 0.0 2.0 2 0 0 2 2 2 2 Clostripain family MULE PF10551.4 gi|330506548|ref|YP_004382976.1| - 3.2e-08 33.6 0.0 8.8e-08 32.2 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|330506548|ref|YP_004382976.1| - 6.6e-07 28.8 1.0 8.8e-06 25.1 0.7 2.0 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|330506548|ref|YP_004382976.1| - 0.012 15.7 0.1 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain DZR PF12773.2 gi|330506548|ref|YP_004382976.1| - 0.026 14.3 2.1 0.059 13.1 1.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|330506548|ref|YP_004382976.1| - 0.056 13.7 3.1 0.12 12.6 0.8 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Terminase_GpA PF05876.7 gi|330506548|ref|YP_004382976.1| - 0.35 9.1 1.3 5.3 5.2 0.2 2.1 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) zf-ISL3 PF14690.1 gi|330506548|ref|YP_004382976.1| - 1.4 8.9 3.8 1.4 9.0 0.7 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|330506548|ref|YP_004382976.1| - 1.6 8.0 5.8 12 5.2 1.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Glyoxalase_2 PF12681.2 gi|330506550|ref|YP_004382978.1| - 1.6e-12 47.9 0.0 2.6e-12 47.3 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|330506550|ref|YP_004382978.1| - 1.2e-05 25.2 0.0 3.9e-05 23.6 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CbiG_C PF01890.11 gi|330506550|ref|YP_004382978.1| - 0.071 13.3 0.0 0.094 12.9 0.0 1.2 1 0 0 1 1 1 0 Cobalamin synthesis G C-terminus TPR_11 PF13414.1 gi|330506551|ref|YP_004382979.1| - 6.6e-71 233.9 17.5 4.3e-24 83.9 0.1 4.2 2 1 3 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|330506551|ref|YP_004382979.1| - 1.2e-63 208.2 8.3 1.3e-11 43.5 0.1 7.0 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330506551|ref|YP_004382979.1| - 1.6e-58 189.9 15.4 2.7e-10 39.3 0.4 7.0 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330506551|ref|YP_004382979.1| - 2.2e-45 152.4 17.5 9.9e-14 51.5 0.0 4.1 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330506551|ref|YP_004382979.1| - 1.1e-41 137.6 5.2 4.6e-07 29.5 0.1 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat Apc3 PF12895.2 gi|330506551|ref|YP_004382979.1| - 6e-38 128.8 5.9 1.2e-08 34.9 0.0 3.8 1 1 5 6 6 6 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.1 gi|330506551|ref|YP_004382979.1| - 1.7e-35 118.0 9.5 1.7e-06 27.4 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330506551|ref|YP_004382979.1| - 2.8e-32 110.4 12.6 9.5e-09 35.0 0.2 5.0 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330506551|ref|YP_004382979.1| - 1.8e-31 105.7 20.6 1.7e-07 31.2 0.1 6.9 1 1 6 7 7 7 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330506551|ref|YP_004382979.1| - 9.1e-31 106.0 12.0 7.6e-10 38.9 0.1 4.1 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330506551|ref|YP_004382979.1| - 1.6e-22 77.4 17.5 0.00016 21.1 0.1 7.2 6 1 1 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330506551|ref|YP_004382979.1| - 4.7e-22 77.6 18.6 8.2e-07 28.7 2.1 4.7 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330506551|ref|YP_004382979.1| - 4.3e-21 73.8 10.4 0.11 13.0 0.0 7.2 7 0 0 7 7 7 5 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330506551|ref|YP_004382979.1| - 2.1e-14 53.1 0.1 0.16 11.8 0.0 6.2 5 1 1 6 6 6 3 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|330506551|ref|YP_004382979.1| - 2.4e-12 46.4 1.0 8.7e-05 21.4 0.0 3.8 2 1 1 4 4 4 3 NMDA receptor-regulated protein 1 TPR_3 PF07720.7 gi|330506551|ref|YP_004382979.1| - 8.1e-12 44.6 4.0 0.018 14.8 0.0 5.5 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_4 PF07721.9 gi|330506551|ref|YP_004382979.1| - 6.5e-11 41.5 15.3 0.66 10.5 0.4 7.5 7 1 1 8 8 7 2 Tetratricopeptide repeat Apc5 PF12862.2 gi|330506551|ref|YP_004382979.1| - 1.6e-09 37.4 0.7 1.6 8.6 0.0 6.0 3 1 2 5 5 5 1 Anaphase-promoting complex subunit 5 TPR_21 PF09976.4 gi|330506551|ref|YP_004382979.1| - 3e-09 36.9 9.9 0.004 17.1 0.2 4.1 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330506551|ref|YP_004382979.1| - 1.1e-08 34.6 24.3 0.81 9.7 0.3 7.2 7 0 0 7 7 7 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|330506551|ref|YP_004382979.1| - 1.7e-08 33.8 5.9 0.0013 17.8 1.0 3.6 1 1 2 3 3 3 3 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|330506551|ref|YP_004382979.1| - 1.8e-08 34.7 0.9 0.23 11.7 0.0 4.4 2 2 3 5 5 5 3 Alkyl sulfatase dimerisation BTAD PF03704.12 gi|330506551|ref|YP_004382979.1| - 9.3e-08 32.4 5.5 0.00031 21.0 0.1 2.9 2 1 0 2 2 2 2 Bacterial transcriptional activator domain TPR_20 PF14561.1 gi|330506551|ref|YP_004382979.1| - 1.4e-06 28.3 6.9 0.24 11.5 0.0 4.7 3 2 2 5 5 5 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330506551|ref|YP_004382979.1| - 6e-06 26.1 7.2 0.17 11.6 0.2 5.8 1 1 3 4 4 4 1 Domain of Unknown Function (DUF3856) FAT PF02259.18 gi|330506551|ref|YP_004382979.1| - 0.00011 21.2 0.2 0.95 8.3 0.0 3.1 1 1 1 2 2 2 2 FAT domain MIT PF04212.13 gi|330506551|ref|YP_004382979.1| - 0.00053 19.8 12.2 0.17 11.8 0.7 6.3 4 4 1 5 5 5 1 MIT (microtubule interacting and transport) domain YfiO PF13525.1 gi|330506551|ref|YP_004382979.1| - 0.0014 18.1 0.3 1.3 8.4 0.0 3.4 2 2 0 2 2 2 1 Outer membrane lipoprotein PPR PF01535.15 gi|330506551|ref|YP_004382979.1| - 0.0047 16.8 0.1 26 5.1 0.0 4.8 6 0 0 6 6 4 0 PPR repeat DUF1250 PF06855.7 gi|330506551|ref|YP_004382979.1| - 0.0067 15.9 0.7 31 4.1 0.0 4.7 6 0 0 6 6 5 0 Protein of unknown function (DUF1250) TPR_5 PF12688.2 gi|330506551|ref|YP_004382979.1| - 0.013 15.5 4.1 1.5 8.8 0.0 3.8 2 1 1 3 3 3 0 Tetratrico peptide repeat Mo-co_dimer PF03404.11 gi|330506551|ref|YP_004382979.1| - 0.02 14.5 0.0 4.6 6.8 0.0 3.3 1 1 2 4 4 4 0 Mo-co oxidoreductase dimerisation domain TPR_18 PF13512.1 gi|330506551|ref|YP_004382979.1| - 0.022 14.8 0.1 6.3 6.8 0.0 3.7 3 2 0 3 3 2 0 Tetratricopeptide repeat DUF1347 PF07079.6 gi|330506551|ref|YP_004382979.1| - 0.023 12.9 0.3 1.3 7.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1347) Clathrin_H_link PF13838.1 gi|330506551|ref|YP_004382979.1| - 0.063 13.1 4.5 1.6 8.6 0.1 3.7 4 0 0 4 4 4 0 Clathrin-H-link DUF627 PF04781.7 gi|330506551|ref|YP_004382979.1| - 0.074 12.6 0.1 9.3 5.9 0.0 3.5 3 2 1 4 4 3 0 Protein of unknown function (DUF627) Dispanin PF04505.7 gi|330506551|ref|YP_004382979.1| - 0.12 11.9 0.2 34 4.0 0.0 3.3 4 0 0 4 4 3 0 Interferon-induced transmembrane protein HEPN PF05168.9 gi|330506551|ref|YP_004382979.1| - 0.76 9.6 8.6 2.9 7.8 0.2 4.2 5 1 0 5 5 4 0 HEPN domain DUF4398 PF14346.1 gi|330506551|ref|YP_004382979.1| - 1.3 9.1 9.5 0.97 9.5 0.1 4.2 6 0 0 6 6 4 0 Domain of unknown function (DUF4398) FIVAR PF07554.8 gi|330506551|ref|YP_004382979.1| - 2.4 8.5 5.5 1e+02 3.3 0.0 4.6 7 0 0 7 7 4 0 Uncharacterised Sugar-binding Domain PemK PF02452.12 gi|330506552|ref|YP_004382980.1| - 0.00075 19.6 0.0 0.00082 19.5 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein NosD PF05048.8 gi|330506553|ref|YP_004382981.1| - 6.1e-54 182.6 38.4 1.4e-47 161.8 16.2 2.0 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|330506553|ref|YP_004382981.1| - 1e-32 113.0 82.1 4.7e-18 65.4 21.5 2.4 1 1 2 3 3 3 3 Right handed beta helix region DUF1565 PF07602.6 gi|330506553|ref|YP_004382981.1| - 1e-07 31.3 24.4 1.5e-05 24.2 16.9 2.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) PGM_PMM_I PF02878.11 gi|330506553|ref|YP_004382981.1| - 0.81 9.1 4.0 6.8 6.1 0.4 2.5 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Fimbrial PF00419.15 gi|330506553|ref|YP_004382981.1| - 1.1 9.4 12.0 4.5 7.4 0.2 3.1 1 1 1 3 3 3 0 Fimbrial protein Acetyltransf_1 PF00583.19 gi|330506554|ref|YP_004382982.1| - 4.4e-13 49.0 0.1 6.8e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|330506554|ref|YP_004382982.1| - 3.9e-10 39.7 0.0 5.8e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|330506554|ref|YP_004382982.1| - 2.8e-08 33.8 0.1 3.4e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|330506554|ref|YP_004382982.1| - 4.5e-07 29.7 0.0 8.5e-07 28.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|330506554|ref|YP_004382982.1| - 0.00063 19.4 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein DUF3749 PF12568.3 gi|330506554|ref|YP_004382982.1| - 0.003 17.1 0.0 0.004 16.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|330506554|ref|YP_004382982.1| - 0.0061 16.4 0.0 0.014 15.2 0.0 1.7 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|330506554|ref|YP_004382982.1| - 0.014 15.5 0.0 0.016 15.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|330506554|ref|YP_004382982.1| - 0.06 13.3 0.0 0.071 13.0 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|330506555|ref|YP_004382983.1| - 5.5e-14 51.9 0.0 8.8e-14 51.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|330506555|ref|YP_004382983.1| - 2.7e-11 43.4 0.0 4e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|330506555|ref|YP_004382983.1| - 2.6e-09 37.2 0.0 3.3e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|330506555|ref|YP_004382983.1| - 3.1e-08 33.5 0.0 6.8e-08 32.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|330506555|ref|YP_004382983.1| - 0.00013 21.5 0.0 0.00022 20.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein DUF3749 PF12568.3 gi|330506555|ref|YP_004382983.1| - 0.00056 19.4 0.0 0.00069 19.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|330506555|ref|YP_004382983.1| - 0.0011 19.0 0.1 0.0015 18.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|330506555|ref|YP_004382983.1| - 0.002 17.9 0.0 0.0029 17.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|330506555|ref|YP_004382983.1| - 0.0083 15.9 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|330506555|ref|YP_004382983.1| - 0.023 14.6 0.0 0.028 14.3 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Alpha-amylase PF00128.19 gi|330506556|ref|YP_004382984.1| - 1.4e-29 103.5 0.0 9.6e-19 67.9 0.0 2.4 1 1 0 2 2 2 2 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.13 gi|330506556|ref|YP_004382984.1| - 0.0015 18.6 0.0 0.0039 17.2 0.0 1.7 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain DUF1638 PF07796.6 gi|330506557|ref|YP_004382985.1| - 6.8e-20 71.3 0.0 8.3e-20 71.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) MukE PF04288.8 gi|330506557|ref|YP_004382985.1| - 0.037 12.8 0.0 0.062 12.0 0.0 1.3 1 0 0 1 1 1 0 MukE-like family Thioredoxin PF00085.15 gi|330506558|ref|YP_004382986.1| - 5.1e-27 93.5 0.0 7.5e-27 93.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|330506558|ref|YP_004382986.1| - 7e-07 29.4 0.1 5.9e-06 26.4 0.0 2.2 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|330506558|ref|YP_004382986.1| - 6e-06 26.2 0.0 0.0027 17.7 0.0 2.4 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|330506558|ref|YP_004382986.1| - 6.3e-05 22.5 0.1 7.9e-05 22.2 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|330506558|ref|YP_004382986.1| - 0.0021 18.0 0.0 0.0032 17.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like KaiB PF07689.7 gi|330506558|ref|YP_004382986.1| - 0.0026 17.1 0.0 0.005 16.2 0.0 1.4 1 0 0 1 1 1 1 KaiB domain HyaE PF07449.6 gi|330506558|ref|YP_004382986.1| - 0.0028 17.5 0.0 0.0046 16.8 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Phosducin PF02114.11 gi|330506558|ref|YP_004382986.1| - 0.0077 14.9 0.0 0.0083 14.8 0.0 1.3 1 1 0 1 1 1 1 Phosducin Redoxin PF08534.5 gi|330506558|ref|YP_004382986.1| - 0.03 13.8 0.0 0.097 12.2 0.0 1.9 1 1 1 2 2 2 0 Redoxin TrbC_Ftype PF09673.5 gi|330506558|ref|YP_004382986.1| - 0.063 12.8 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein Thioredoxin_6 PF13848.1 gi|330506558|ref|YP_004382986.1| - 0.063 13.0 0.0 0.13 12.0 0.0 1.5 2 0 0 2 2 2 0 Thioredoxin-like domain DUF953 PF06110.6 gi|330506558|ref|YP_004382986.1| - 0.12 11.7 0.0 0.41 10.1 0.0 1.8 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Wzt_C PF14524.1 gi|330506560|ref|YP_004382988.1| - 0.00035 20.2 0.0 0.13 11.9 0.0 2.4 2 0 0 2 2 2 2 Wzt C-terminal domain CopC PF04234.7 gi|330506560|ref|YP_004382988.1| - 0.024 15.2 0.0 1.3 9.6 0.0 2.4 2 0 0 2 2 2 0 CopC domain Glyco_hydro_2 PF00703.16 gi|330506560|ref|YP_004382988.1| - 0.096 13.1 0.0 0.58 10.6 0.0 2.3 2 0 0 2 2 2 0 Glycosyl hydrolases family 2 Peptidase_M50 PF02163.17 gi|330506561|ref|YP_004382989.1| - 1.1e-25 89.6 0.0 6.5e-25 87.2 0.0 2.2 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|330506561|ref|YP_004382989.1| - 9.7e-11 41.4 0.0 1.9e-06 27.6 0.0 2.4 1 1 1 2 2 2 2 PDZ domain PDZ PF00595.19 gi|330506561|ref|YP_004382989.1| - 7.5e-05 22.8 0.7 0.014 15.5 0.1 2.5 1 1 0 2 2 2 2 PDZ domain (Also known as DHR or GLGF) KH_1 PF00013.24 gi|330506562|ref|YP_004382990.1| - 5.5e-17 61.1 2.8 2.5e-08 33.4 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|330506562|ref|YP_004382990.1| - 2.3e-06 27.1 1.5 0.014 15.0 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|330506562|ref|YP_004382990.1| - 0.00058 19.3 2.0 0.51 9.9 0.0 2.4 2 0 0 2 2 2 2 KH domain RIO1 PF01163.17 gi|330506563|ref|YP_004382991.1| - 2.5e-62 209.6 0.0 3.5e-62 209.1 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|330506563|ref|YP_004382991.1| - 3.2e-05 23.2 0.0 3.9e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|330506563|ref|YP_004382991.1| - 0.00015 20.8 0.0 0.00046 19.3 0.0 1.7 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|330506563|ref|YP_004382991.1| - 0.00031 20.5 0.1 0.0011 18.7 0.0 1.8 1 1 1 2 2 2 1 Phosphotransferase enzyme family DUF759 PF05537.6 gi|330506563|ref|YP_004382991.1| - 0.04 12.6 0.1 0.079 11.7 0.1 1.5 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) eIF-1a PF01176.14 gi|330506564|ref|YP_004382992.1| - 3.8e-14 51.8 1.6 4.5e-14 51.6 1.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Prenyltransf PF01255.14 gi|330506565|ref|YP_004382993.1| - 1.5e-70 236.8 0.0 1.8e-70 236.5 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Mg_chelatase_2 PF13335.1 gi|330506565|ref|YP_004382993.1| - 0.027 14.8 0.2 0.05 14.0 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SurE PF01975.12 gi|330506566|ref|YP_004382994.1| - 3.2e-56 189.7 0.2 3.9e-56 189.4 0.1 1.0 1 0 0 1 1 1 1 Survival protein SurE EIIC-GAT PF03611.9 gi|330506566|ref|YP_004382994.1| - 0.012 14.3 0.2 0.016 13.9 0.2 1.1 1 0 0 1 1 1 0 PTS system sugar-specific permease component IGPD PF00475.13 gi|330506567|ref|YP_004382995.1| - 2.6e-39 134.3 0.0 3.9e-39 133.8 0.0 1.3 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.16 gi|330506568|ref|YP_004382996.1| - 5.2e-72 241.8 2.1 5.8e-72 241.6 1.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|330506568|ref|YP_004382996.1| - 7.4e-09 34.8 0.4 0.00012 21.0 0.0 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|330506568|ref|YP_004382996.1| - 1e-07 31.4 1.4 2.1e-06 27.1 0.1 2.2 2 0 0 2 2 2 1 PcrB family DHO_dh PF01180.16 gi|330506568|ref|YP_004382996.1| - 1.4e-06 27.5 1.1 0.00018 20.5 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase NMO PF03060.10 gi|330506568|ref|YP_004382996.1| - 1.7e-06 27.4 7.3 0.0003 20.0 1.2 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.9 gi|330506568|ref|YP_004382996.1| - 5.2e-06 25.7 2.1 0.00076 18.6 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.12 gi|330506568|ref|YP_004382996.1| - 3.1e-05 23.1 0.9 0.004 16.2 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI IGPS PF00218.16 gi|330506568|ref|YP_004382996.1| - 0.00054 19.0 0.3 0.27 10.2 0.0 2.2 2 0 0 2 2 2 2 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|330506568|ref|YP_004382996.1| - 0.0082 14.7 0.7 0.095 11.2 0.0 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain G3P_antiterm PF04309.7 gi|330506568|ref|YP_004382996.1| - 0.0083 15.1 0.7 0.97 8.4 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator NanE PF04131.9 gi|330506568|ref|YP_004382996.1| - 0.01 14.7 0.4 0.14 11.1 0.0 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Ribul_P_3_epim PF00834.14 gi|330506568|ref|YP_004382996.1| - 0.018 14.1 2.0 1.1 8.3 0.1 2.4 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.13 gi|330506568|ref|YP_004382996.1| - 0.065 12.0 8.0 0.15 10.8 0.4 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Pterin_bind PF00809.17 gi|330506568|ref|YP_004382996.1| - 0.067 12.5 0.3 0.14 11.5 0.2 1.5 1 1 0 1 1 1 0 Pterin binding enzyme IMPDH PF00478.20 gi|330506568|ref|YP_004382996.1| - 0.74 8.6 3.3 2.2 7.1 2.0 1.7 1 1 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PspA_IM30 PF04012.7 gi|330506569|ref|YP_004382997.1| - 1.2e-23 83.6 32.0 1.4e-23 83.4 22.2 1.0 1 0 0 1 1 1 1 PspA/IM30 family COG5 PF10392.4 gi|330506569|ref|YP_004382997.1| - 0.0025 17.7 7.7 0.0025 17.7 5.3 2.4 1 1 1 2 2 2 1 Golgi transport complex subunit 5 Baculo_PEP_C PF04513.7 gi|330506569|ref|YP_004382997.1| - 0.0062 16.3 4.8 0.0062 16.3 3.3 2.7 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Flagellin_C PF00700.16 gi|330506569|ref|YP_004382997.1| - 0.008 16.3 13.8 0.13 12.4 0.1 4.0 2 1 2 4 4 4 2 Bacterial flagellin C-terminal helical region AAA_13 PF13166.1 gi|330506569|ref|YP_004382997.1| - 0.044 12.2 15.5 0.053 11.9 10.7 1.1 1 0 0 1 1 1 0 AAA domain Striatin PF08232.7 gi|330506569|ref|YP_004382997.1| - 0.044 14.0 14.7 0.13 12.5 5.3 2.5 1 1 1 2 2 2 0 Striatin family Filament PF00038.16 gi|330506569|ref|YP_004382997.1| - 0.083 12.3 26.1 80 2.5 18.1 2.8 1 1 0 1 1 1 0 Intermediate filament protein HAUS5 PF14817.1 gi|330506569|ref|YP_004382997.1| - 0.25 9.8 16.2 0.11 11.0 9.5 1.6 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 5 DUF1501 PF07394.7 gi|330506569|ref|YP_004382997.1| - 0.4 9.4 9.8 0.082 11.7 3.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1501) Prominin PF05478.6 gi|330506569|ref|YP_004382997.1| - 0.51 7.8 11.8 0.58 7.6 8.2 1.2 1 0 0 1 1 1 0 Prominin GCN5L1 PF06320.8 gi|330506569|ref|YP_004382997.1| - 1.1 9.0 14.7 0.52 10.1 0.8 2.8 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) Snapin_Pallidin PF14712.1 gi|330506569|ref|YP_004382997.1| - 1.1 9.5 17.2 0.093 13.0 3.5 3.3 1 1 0 2 2 2 0 Snapin/Pallidin Sec20 PF03908.8 gi|330506569|ref|YP_004382997.1| - 1.3 8.7 9.8 2.4 7.9 1.9 2.8 1 1 2 3 3 3 0 Sec20 IncA PF04156.9 gi|330506569|ref|YP_004382997.1| - 1.8 8.1 20.4 8.7 5.8 13.7 2.4 1 1 0 1 1 1 0 IncA protein DUF972 PF06156.8 gi|330506569|ref|YP_004382997.1| - 2 8.8 19.9 4.2 7.7 2.4 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DUF1664 PF07889.7 gi|330506569|ref|YP_004382997.1| - 3.2 7.5 15.3 3.5 7.4 2.6 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) Osmo_CC PF08946.5 gi|330506569|ref|YP_004382997.1| - 3.4 7.7 11.1 0.83 9.7 1.0 3.5 2 1 2 4 4 4 0 Osmosensory transporter coiled coil EMP24_GP25L PF01105.19 gi|330506569|ref|YP_004382997.1| - 4 7.1 9.2 2 8.1 2.5 2.4 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF479 PF04336.7 gi|330506569|ref|YP_004382997.1| - 4.9 7.3 6.9 29 4.8 0.0 3.2 2 1 1 3 3 3 0 Protein of unknown function, DUF479 Snf7 PF03357.16 gi|330506569|ref|YP_004382997.1| - 6.5 6.1 31.0 6.5 6.0 17.5 2.8 1 1 1 2 2 2 0 Snf7 Spc7 PF08317.6 gi|330506569|ref|YP_004382997.1| - 6.7 5.2 23.3 2.1 6.9 11.0 2.3 1 1 1 2 2 2 0 Spc7 kinetochore protein V_ATPase_I PF01496.14 gi|330506569|ref|YP_004382997.1| - 8.2 4.1 13.4 12 3.6 8.9 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family SporV_AA PF12164.3 gi|330506570|ref|YP_004382998.1| - 0.12 12.4 0.1 0.16 11.9 0.1 1.2 1 0 0 1 1 1 0 Stage V sporulation protein AA Tna_leader PF08053.6 gi|330506570|ref|YP_004382998.1| - 0.52 9.7 2.6 0.86 9.0 1.8 1.3 1 0 0 1 1 1 0 Tryptophanese operon leader peptide Cation_efflux PF01545.16 gi|330506571|ref|YP_004382999.1| - 9.4e-73 244.7 13.4 1.1e-72 244.5 9.3 1.0 1 0 0 1 1 1 1 Cation efflux family DUF1345 PF07077.6 gi|330506571|ref|YP_004382999.1| - 0.11 11.9 2.1 0.81 9.1 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1345) GSDH PF07995.6 gi|330506572|ref|YP_004383000.1| - 4.1e-46 157.5 0.0 5.1e-46 157.2 0.0 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase NHL PF01436.16 gi|330506572|ref|YP_004383000.1| - 0.0054 16.6 0.0 0.0054 16.6 0.0 3.1 3 0 0 3 3 3 1 NHL repeat Reg_prop PF07494.6 gi|330506572|ref|YP_004383000.1| - 0.053 13.5 0.0 45 4.5 0.0 4.4 4 0 0 4 4 4 0 Two component regulator propeller NAD_binding_8 PF13450.1 gi|330506573|ref|YP_004383001.1| - 7.4e-18 64.3 0.0 1.4e-17 63.4 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|330506573|ref|YP_004383001.1| - 2.2e-12 46.8 0.0 2.2e-10 40.1 0.0 2.3 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|330506573|ref|YP_004383001.1| - 3e-10 39.5 0.5 5.4e-08 32.1 0.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330506573|ref|YP_004383001.1| - 4.4e-10 38.9 0.5 2.1e-07 30.1 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|330506573|ref|YP_004383001.1| - 8.4e-08 31.6 0.1 1.7e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|330506573|ref|YP_004383001.1| - 4e-07 28.8 0.1 7.3e-05 21.4 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein GDI PF00996.13 gi|330506573|ref|YP_004383001.1| - 4.4e-06 25.2 0.8 0.00044 18.6 0.1 2.1 2 0 0 2 2 2 2 GDP dissociation inhibitor Thi4 PF01946.12 gi|330506573|ref|YP_004383001.1| - 1.2e-05 24.5 0.2 2.4e-05 23.5 0.2 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|330506573|ref|YP_004383001.1| - 1.7e-05 25.0 1.1 0.00082 19.7 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|330506573|ref|YP_004383001.1| - 2.5e-05 23.5 0.1 4.7e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|330506573|ref|YP_004383001.1| - 5e-05 23.2 0.0 0.00098 19.0 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|330506573|ref|YP_004383001.1| - 0.0036 16.2 0.1 0.0078 15.1 0.1 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|330506573|ref|YP_004383001.1| - 0.011 15.8 0.0 0.11 12.5 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|330506573|ref|YP_004383001.1| - 0.031 14.0 0.0 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|330506573|ref|YP_004383001.1| - 0.048 12.5 0.1 0.07 12.0 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|330506573|ref|YP_004383001.1| - 0.082 11.5 0.2 0.12 10.9 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Strep_67kDa_ant PF06100.6 gi|330506573|ref|YP_004383001.1| - 0.17 10.2 0.0 0.25 9.6 0.0 1.2 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family Glu-tRNAGln PF02686.10 gi|330506574|ref|YP_004383002.1| - 1.1e-25 89.2 0.3 1.5e-25 88.7 0.2 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.16 gi|330506575|ref|YP_004383003.1| - 1.2e-147 492.3 0.0 1.4e-147 492.1 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.10 gi|330506576|ref|YP_004383004.1| - 7.8e-111 369.5 0.0 1e-110 369.1 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|330506576|ref|YP_004383004.1| - 2.6e-39 134.2 0.0 4.2e-39 133.6 0.0 1.2 1 0 0 1 1 1 1 GatB domain DUF1128 PF06569.6 gi|330506576|ref|YP_004383004.1| - 0.0034 17.0 0.0 4.6 7.0 0.0 3.7 4 0 0 4 4 4 1 Protein of unknown function (DUF1128) L_lactis_RepB_C PF06430.7 gi|330506576|ref|YP_004383004.1| - 0.032 14.2 0.1 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 Lactococcus lactis RepB C-terminus YqeY PF09424.5 gi|330506576|ref|YP_004383004.1| - 0.1 12.4 0.2 0.2 11.5 0.2 1.4 1 0 0 1 1 1 0 Yqey-like protein eRF1_2 PF03464.10 gi|330506577|ref|YP_004383005.1| - 9.3e-17 61.5 0.0 2.2e-16 60.3 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|330506577|ref|YP_004383005.1| - 5.3e-11 42.7 0.0 1.4e-10 41.3 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 3 DUF876 PF05936.7 gi|330506577|ref|YP_004383005.1| - 0.05 12.0 0.0 0.074 11.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF876) DUF1525 PF07511.6 gi|330506577|ref|YP_004383005.1| - 0.11 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) DUF35_N PF12172.3 gi|330506577|ref|YP_004383005.1| - 0.17 11.8 1.8 0.42 10.5 1.2 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) AAL_decarboxy PF03306.8 gi|330506578|ref|YP_004383006.1| - 1.3e-88 295.7 0.0 1.5e-88 295.5 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase DJ-1_PfpI PF01965.19 gi|330506579|ref|YP_004383007.1| - 6.5e-26 90.5 0.3 9.7e-26 89.9 0.2 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|330506579|ref|YP_004383007.1| - 3e-18 65.6 0.0 4.2e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase Rubredoxin PF00301.15 gi|330506579|ref|YP_004383007.1| - 2.2e-12 46.6 5.1 2.2e-12 46.6 3.5 3.0 2 1 0 2 2 2 1 Rubredoxin HypA PF01155.14 gi|330506579|ref|YP_004383007.1| - 0.083 12.5 3.5 4.7 6.9 0.1 2.2 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Cys_rich_CPCC PF14206.1 gi|330506579|ref|YP_004383007.1| - 0.19 11.2 8.8 0.24 10.9 1.1 3.4 2 1 1 3 3 3 0 Cysteine-rich CPCC zf-SNAP50_C PF12251.3 gi|330506579|ref|YP_004383007.1| - 0.35 10.2 3.9 0.12 11.7 0.8 1.5 2 0 0 2 2 2 0 snRNA-activating protein of 50kDa MW C terminal OrfB_Zn_ribbon PF07282.6 gi|330506579|ref|YP_004383007.1| - 1.2 8.7 8.0 5.4 6.7 0.6 2.9 2 1 0 2 2 2 0 Putative transposase DNA-binding domain AsnC_trans_reg PF01037.16 gi|330506581|ref|YP_004383009.1| - 5.6e-09 35.5 0.1 6.7e-09 35.3 0.0 1.1 1 0 0 1 1 1 1 AsnC family CarboxypepD_reg PF13620.1 gi|330506582|ref|YP_004383010.1| - 5.3e-06 26.4 1.9 0.047 13.7 0.1 2.2 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain LT-IIB PF06453.6 gi|330506582|ref|YP_004383010.1| - 0.059 13.0 0.1 0.93 9.1 0.0 2.1 2 0 0 2 2 2 0 Type II heat-labile enterotoxin , B subunit (LT-IIB) dCMP_cyt_deam_1 PF00383.17 gi|330506583|ref|YP_004383011.1| - 8.6e-22 76.7 0.0 1.2e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|330506583|ref|YP_004383011.1| - 0.00012 21.9 0.2 0.0087 15.9 0.3 2.2 1 1 1 2 2 2 1 Bd3614-like deaminase MafB19-deam PF14437.1 gi|330506583|ref|YP_004383011.1| - 0.037 13.6 0.1 0.053 13.1 0.0 1.2 1 0 0 1 1 1 0 MafB19-like deaminase XOO_2897-deam PF14440.1 gi|330506583|ref|YP_004383011.1| - 0.13 11.9 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase Transglut_core PF01841.14 gi|330506584|ref|YP_004383012.1| - 1.9e-07 31.2 0.0 2.8e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily Peptidase_C93 PF06035.6 gi|330506584|ref|YP_004383012.1| - 2.8e-06 26.8 0.0 4.5e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial transglutaminase-like cysteine proteinase BTLCP DUF553 PF04473.7 gi|330506584|ref|YP_004383012.1| - 0.0041 16.4 0.0 0.012 14.8 0.0 1.7 1 1 0 1 1 1 1 Transglutaminase-like domain SfsA PF03749.8 gi|330506584|ref|YP_004383012.1| - 0.078 12.4 0.0 0.41 10.0 0.0 1.8 2 0 0 2 2 2 0 Sugar fermentation stimulation protein Mut7-C PF01927.11 gi|330506585|ref|YP_004383013.1| - 3.6e-30 104.8 5.6 2.4e-29 102.1 3.9 1.9 1 1 0 1 1 1 1 Mut7-C RNAse domain zf-TFIIB PF13453.1 gi|330506585|ref|YP_004383013.1| - 0.0041 16.2 1.0 0.011 14.9 0.7 1.7 1 0 0 1 1 1 1 Transcription factor zinc-finger PhnA_Zn_Ribbon PF08274.7 gi|330506585|ref|YP_004383013.1| - 0.0064 16.2 1.0 0.0064 16.2 0.7 2.3 2 1 0 2 2 2 1 PhnA Zinc-Ribbon DUF164 PF02591.10 gi|330506585|ref|YP_004383013.1| - 0.044 13.6 1.0 0.14 11.9 0.7 1.9 1 1 0 1 1 1 0 Putative zinc ribbon domain DUF3346 PF11826.3 gi|330506585|ref|YP_004383013.1| - 0.069 12.9 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3346) C1_1 PF00130.17 gi|330506585|ref|YP_004383013.1| - 0.078 12.7 0.2 0.16 11.6 0.2 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Prok-RING_1 PF14446.1 gi|330506585|ref|YP_004383013.1| - 0.093 12.4 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 MtrF PF09472.5 gi|330506585|ref|YP_004383013.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) OrfB_Zn_ribbon PF07282.6 gi|330506585|ref|YP_004383013.1| - 0.17 11.5 1.9 0.24 11.0 0.3 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain NMD3 PF04981.8 gi|330506585|ref|YP_004383013.1| - 0.27 10.3 3.8 0.57 9.2 2.6 1.5 1 1 0 1 1 1 0 NMD3 family Rubredoxin PF00301.15 gi|330506585|ref|YP_004383013.1| - 0.3 10.9 2.2 2.7 7.9 1.5 2.2 1 1 0 1 1 1 0 Rubredoxin Gin PF10764.4 gi|330506585|ref|YP_004383013.1| - 5.3 6.8 5.6 11 5.8 0.1 2.8 2 1 0 2 2 2 0 Inhibitor of sigma-G Gin zf-C2H2_4 PF13894.1 gi|330506585|ref|YP_004383013.1| - 7.7 7.1 5.7 67 4.1 1.7 2.9 2 1 0 2 2 2 0 C2H2-type zinc finger FbpA PF05833.6 gi|330506586|ref|YP_004383014.1| - 7.2e-77 258.8 0.0 9.4e-77 258.4 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|330506586|ref|YP_004383014.1| - 1.6e-25 88.8 0.0 2.7e-25 88.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) HNH PF01844.18 gi|330506587|ref|YP_004383015.1| - 4.5e-05 23.2 1.1 0.00011 21.9 0.7 1.6 1 0 0 1 1 1 1 HNH endonuclease ParBc PF02195.13 gi|330506587|ref|YP_004383015.1| - 0.047 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 ParB-like nuclease domain Ion_trans_2 PF07885.11 gi|330506588|ref|YP_004383016.1| - 6.3e-16 57.8 5.0 6.3e-16 57.8 3.4 2.9 2 1 1 3 3 3 1 Ion channel Ion_trans PF00520.26 gi|330506588|ref|YP_004383016.1| - 3.5e-15 55.7 13.4 3.5e-15 55.7 9.3 2.0 2 0 0 2 2 2 1 Ion transport protein zf-ribbon_3 PF13248.1 gi|330506588|ref|YP_004383016.1| - 8.4e-06 24.8 0.4 1.3e-05 24.2 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|330506588|ref|YP_004383016.1| - 0.0029 17.3 0.5 0.0051 16.6 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|330506588|ref|YP_004383016.1| - 0.014 14.8 2.8 0.031 13.7 1.9 1.6 1 1 0 1 1 1 0 zinc-ribbon domain PALP PF00291.20 gi|330506589|ref|YP_004383017.1| - 4.9e-76 255.8 4.9 5.9e-76 255.6 3.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|330506589|ref|YP_004383017.1| - 0.00016 21.1 0.5 0.002 17.5 0.0 2.7 3 0 0 3 3 3 1 ACT domain OrfB_Zn_ribbon PF07282.6 gi|330506590|ref|YP_004383018.1| - 1.2e-23 82.4 0.0 3.7e-23 80.9 0.0 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330506590|ref|YP_004383018.1| - 1.1e-11 44.6 1.5 1.5e-11 44.1 1.0 1.2 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|330506590|ref|YP_004383018.1| - 0.034 13.9 0.8 0.1 12.4 0.6 1.8 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|330506590|ref|YP_004383018.1| - 0.05 13.3 0.1 0.11 12.1 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1610 PF07754.6 gi|330506590|ref|YP_004383018.1| - 0.075 13.1 5.4 1.8 8.7 4.3 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1610) tRNA-synt_1_2 PF13603.1 gi|330506591|ref|YP_004383019.1| - 0.13 11.5 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 KRTDAP PF15200.1 gi|330506594|ref|YP_004383022.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Keratinocyte differentiation-associated YcfA PF07927.7 gi|330506595|ref|YP_004383023.1| - 0.00098 18.9 0.0 0.0011 18.8 0.0 1.1 1 0 0 1 1 1 1 YcfA-like protein UPF0150 PF03681.10 gi|330506596|ref|YP_004383024.1| - 1e-17 63.4 0.1 1.4e-17 62.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) PUA PF01472.15 gi|330506597|ref|YP_004383025.1| - 9.9e-15 54.0 0.1 3.7e-14 52.2 0.1 2.0 2 0 0 2 2 2 1 PUA domain TGT PF01702.13 gi|330506597|ref|YP_004383025.1| - 2.1e-14 53.3 0.0 1.2e-13 50.8 0.0 2.0 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|330506597|ref|YP_004383025.1| - 2.5e-05 24.0 0.1 6.7e-05 22.6 0.1 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|330506598|ref|YP_004383026.1| - 6.6e-48 163.0 0.0 1e-47 162.4 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|330506598|ref|YP_004383026.1| - 0.048 13.4 0.1 8 6.3 0.0 2.6 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation Mur_ligase_C PF02875.16 gi|330506598|ref|YP_004383026.1| - 0.11 12.5 0.0 0.4 10.7 0.0 1.9 2 0 0 2 2 2 0 Mur ligase family, glutamate ligase domain Aconitase PF00330.15 gi|330506599|ref|YP_004383027.1| - 3.6e-98 329.0 4.2 5.7e-69 232.7 0.1 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|330506599|ref|YP_004383027.1| - 4.2e-19 68.9 0.0 8.4e-19 67.9 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.8 gi|330506599|ref|YP_004383027.1| - 0.0059 15.1 0.0 0.01 14.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) YcfA PF07927.7 gi|330506600|ref|YP_004383028.1| - 7.2e-19 67.4 0.1 8.5e-19 67.2 0.1 1.1 1 0 0 1 1 1 1 YcfA-like protein UPF0150 PF03681.10 gi|330506601|ref|YP_004383029.1| - 4.6e-18 64.5 0.0 6.5e-18 64.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Jag_N PF14804.1 gi|330506601|ref|YP_004383029.1| - 0.07 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Jag N-terminus UPF0150 PF03681.10 gi|330506602|ref|YP_004383030.1| - 5.3e-18 64.3 0.0 6.6e-18 64.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|330506602|ref|YP_004383030.1| - 0.058 12.9 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) SIMPL PF04402.9 gi|330506602|ref|YP_004383030.1| - 0.13 12.0 0.0 0.15 11.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF541) PRiA4_ORF3 PF07929.6 gi|330506603|ref|YP_004383031.1| - 3.5e-65 218.7 0.1 3.9e-65 218.5 0.0 1.0 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein FeoA PF04023.9 gi|330506606|ref|YP_004383034.1| - 2e-10 40.4 0.1 2.2e-10 40.3 0.1 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.9 gi|330506607|ref|YP_004383035.1| - 1.5e-17 63.2 0.1 1.7e-17 63.1 0.1 1.0 1 0 0 1 1 1 1 FeoA domain Fe_dep_repress PF01325.14 gi|330506609|ref|YP_004383037.1| - 9.3e-19 67.1 0.0 2.1e-18 65.9 0.1 1.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|330506609|ref|YP_004383037.1| - 2e-12 46.6 0.1 3.8e-12 45.7 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|330506609|ref|YP_004383037.1| - 3.1e-06 27.4 0.0 5.6e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|330506609|ref|YP_004383037.1| - 4.2e-05 23.1 0.0 9.3e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|330506609|ref|YP_004383037.1| - 0.0018 17.9 0.0 0.0034 17.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|330506609|ref|YP_004383037.1| - 0.01 15.2 0.0 0.047 13.0 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|330506609|ref|YP_004383037.1| - 0.018 15.1 0.0 0.031 14.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.14 gi|330506609|ref|YP_004383037.1| - 0.026 14.2 0.1 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ANT PF03374.9 gi|330506609|ref|YP_004383037.1| - 0.03 14.3 0.0 0.051 13.6 0.0 1.4 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain IF2_N PF04760.10 gi|330506609|ref|YP_004383037.1| - 0.032 13.8 0.0 0.077 12.6 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region FeoC PF09012.5 gi|330506609|ref|YP_004383037.1| - 0.053 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF505 PF04458.7 gi|330506609|ref|YP_004383037.1| - 0.081 11.0 0.0 0.1 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) B-block_TFIIIC PF04182.7 gi|330506609|ref|YP_004383037.1| - 0.087 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_IclR PF09339.5 gi|330506609|ref|YP_004383037.1| - 0.12 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Cache_2 PF08269.6 gi|330506610|ref|YP_004383038.1| - 4.6e-25 87.4 0.0 1.8e-13 50.2 0.0 2.3 2 0 0 2 2 2 2 Cache domain PDR_CDR PF06422.7 gi|330506610|ref|YP_004383038.1| - 0.11 12.1 1.6 1.3 8.7 0.0 2.8 3 0 0 3 3 3 0 CDR ABC transporter Transposase_mut PF00872.13 gi|330506611|ref|YP_004383039.1| - 1.3e-104 349.7 1.1 1.6e-104 349.5 0.7 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|330506611|ref|YP_004383039.1| - 2.4e-14 53.2 0.1 6.6e-14 51.8 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.12 gi|330506611|ref|YP_004383039.1| - 3.5e-05 23.5 0.7 0.0016 18.1 0.0 2.2 1 1 1 2 2 2 2 Transposase YodA PF09223.6 gi|330506612|ref|YP_004383040.1| - 2.3e-10 40.4 0.3 5.9e-07 29.3 0.1 2.0 2 0 0 2 2 2 2 YodA lipocalin-like domain CbiX PF01903.12 gi|330506613|ref|YP_004383041.1| - 2.7e-43 146.3 0.0 1.1e-16 60.8 0.0 4.5 4 0 0 4 4 4 4 CbiX Ferrochelatase PF00762.14 gi|330506613|ref|YP_004383041.1| - 3.9e-05 22.7 0.0 0.0034 16.3 0.0 3.0 3 0 0 3 3 3 1 Ferrochelatase SKI PF01202.17 gi|330506615|ref|YP_004383043.1| - 2.1e-38 131.6 0.0 2.4e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_17 PF13207.1 gi|330506615|ref|YP_004383043.1| - 2.9e-08 34.5 0.0 4.4e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|330506615|ref|YP_004383043.1| - 1.2e-07 32.0 0.0 2.2e-07 31.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|330506615|ref|YP_004383043.1| - 1.2e-05 25.2 0.0 5.2e-05 23.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|330506615|ref|YP_004383043.1| - 0.0017 18.3 0.0 0.0022 17.9 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase-like family CoaE PF01121.15 gi|330506615|ref|YP_004383043.1| - 0.0098 15.3 0.1 0.017 14.5 0.0 1.5 1 0 0 1 1 1 1 Dephospho-CoA kinase AAA PF00004.24 gi|330506615|ref|YP_004383043.1| - 0.015 15.4 0.0 0.024 14.8 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ADK PF00406.17 gi|330506615|ref|YP_004383043.1| - 0.019 14.8 0.0 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase RuvB_N PF05496.7 gi|330506615|ref|YP_004383043.1| - 0.023 13.7 0.2 0.041 12.9 0.1 1.4 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus KTI12 PF08433.5 gi|330506615|ref|YP_004383043.1| - 0.059 12.5 0.0 0.07 12.3 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 IstB_IS21 PF01695.12 gi|330506615|ref|YP_004383043.1| - 0.059 12.7 0.0 0.082 12.3 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_28 PF13521.1 gi|330506615|ref|YP_004383043.1| - 0.094 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|330506615|ref|YP_004383043.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|330506616|ref|YP_004383044.1| - 1e-33 116.5 0.0 1.8e-33 115.7 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|330506616|ref|YP_004383044.1| - 3.7e-16 59.9 0.1 5.3e-07 29.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330506616|ref|YP_004383044.1| - 4.3e-08 32.6 0.9 4e-06 26.2 0.6 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|330506616|ref|YP_004383044.1| - 3e-07 29.8 0.1 0.0065 15.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|330506616|ref|YP_004383044.1| - 1.7e-06 27.4 0.0 3.2e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|330506616|ref|YP_004383044.1| - 5e-06 26.9 0.2 7.2e-06 26.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330506616|ref|YP_004383044.1| - 2e-05 24.6 0.1 0.00031 20.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|330506616|ref|YP_004383044.1| - 0.00013 21.2 0.1 0.00023 20.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|330506616|ref|YP_004383044.1| - 0.00019 20.9 0.3 0.0078 15.6 0.1 2.5 2 1 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|330506616|ref|YP_004383044.1| - 0.00076 19.6 0.3 0.011 15.9 0.2 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|330506616|ref|YP_004383044.1| - 0.0019 18.3 0.1 0.035 14.2 0.0 2.5 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|330506616|ref|YP_004383044.1| - 0.002 17.8 0.2 0.0092 15.7 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|330506616|ref|YP_004383044.1| - 0.0086 15.4 0.7 0.03 13.7 0.1 2.0 2 0 0 2 2 2 1 AAA domain MutS_V PF00488.16 gi|330506616|ref|YP_004383044.1| - 0.0092 15.4 0.0 0.022 14.1 0.0 1.6 1 0 0 1 1 1 1 MutS domain V ABC_ATPase PF09818.4 gi|330506616|ref|YP_004383044.1| - 0.0092 14.6 0.0 0.72 8.3 0.0 2.5 2 1 1 3 3 3 1 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|330506616|ref|YP_004383044.1| - 0.013 14.6 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|330506616|ref|YP_004383044.1| - 0.013 15.1 0.1 0.048 13.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain SbcCD_C PF13558.1 gi|330506616|ref|YP_004383044.1| - 0.016 15.1 0.2 0.23 11.3 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|330506616|ref|YP_004383044.1| - 0.037 13.6 0.1 0.16 11.5 0.0 2.0 3 0 0 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|330506616|ref|YP_004383044.1| - 0.045 13.4 0.0 0.079 12.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase UPF0079 PF02367.12 gi|330506616|ref|YP_004383044.1| - 0.061 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_5 PF07728.9 gi|330506616|ref|YP_004383044.1| - 0.07 12.8 0.1 0.41 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|330506616|ref|YP_004383044.1| - 0.075 12.9 0.1 0.21 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|330506616|ref|YP_004383044.1| - 0.085 12.5 0.1 0.22 11.2 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|330506616|ref|YP_004383044.1| - 0.086 12.3 0.0 0.25 10.7 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family Thymidylate_kin PF02223.12 gi|330506616|ref|YP_004383044.1| - 0.096 12.0 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase AAA_14 PF13173.1 gi|330506616|ref|YP_004383044.1| - 0.1 12.5 0.1 0.49 10.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain Cellulose_synt PF03552.9 gi|330506616|ref|YP_004383044.1| - 0.11 10.7 0.0 0.15 10.3 0.0 1.1 1 0 0 1 1 1 0 Cellulose synthase SRP54 PF00448.17 gi|330506616|ref|YP_004383044.1| - 0.13 11.7 0.1 0.24 10.8 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain FecCD PF01032.13 gi|330506617|ref|YP_004383045.1| - 3.2e-92 308.7 31.7 3.7e-92 308.4 22.0 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|330506617|ref|YP_004383045.1| - 4.9e-06 26.0 18.1 4.9e-06 26.0 12.6 1.8 1 1 1 2 2 2 1 ABC 3 transport family DUF1129 PF06570.6 gi|330506617|ref|YP_004383045.1| - 1.5 8.1 5.8 5.9 6.1 4.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Radical_SAM PF04055.16 gi|330506618|ref|YP_004383046.1| - 5.9e-09 36.3 0.0 1.2e-08 35.2 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Peripla_BP_2 PF01497.13 gi|330506618|ref|YP_004383046.1| - 2.8e-06 26.6 0.0 4.4e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Fer4_12 PF13353.1 gi|330506618|ref|YP_004383046.1| - 3.4e-05 23.9 0.3 7.1e-05 22.9 0.2 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330506618|ref|YP_004383046.1| - 0.022 14.8 0.4 0.073 13.1 0.3 1.9 1 0 0 1 1 1 0 4Fe-4S single cluster domain Methyltransf_11 PF08241.7 gi|330506619|ref|YP_004383047.1| - 1.8e-17 63.6 0.0 1.1e-16 61.0 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330506619|ref|YP_004383047.1| - 9.3e-14 51.2 0.0 1.3e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330506619|ref|YP_004383047.1| - 3.2e-13 49.8 0.0 6.7e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330506619|ref|YP_004383047.1| - 1.4e-09 38.5 0.1 3e-09 37.4 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330506619|ref|YP_004383047.1| - 1.1e-08 35.3 0.0 4.7e-08 33.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330506619|ref|YP_004383047.1| - 2.6e-08 33.9 0.1 7.1e-08 32.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330506619|ref|YP_004383047.1| - 3.9e-08 32.6 0.0 7.1e-08 31.8 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|330506619|ref|YP_004383047.1| - 4e-08 33.1 0.0 6e-08 32.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330506619|ref|YP_004383047.1| - 0.00025 20.4 0.0 0.00048 19.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|330506619|ref|YP_004383047.1| - 0.00069 18.8 0.0 0.0011 18.0 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|330506619|ref|YP_004383047.1| - 0.0042 16.7 0.0 0.048 13.2 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|330506619|ref|YP_004383047.1| - 0.0046 16.0 0.0 0.0052 15.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|330506619|ref|YP_004383047.1| - 0.0059 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 FmrO PF07091.6 gi|330506619|ref|YP_004383047.1| - 0.032 13.2 0.0 0.049 12.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|330506619|ref|YP_004383047.1| - 0.047 13.3 0.5 0.19 11.3 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Met_10 PF02475.11 gi|330506619|ref|YP_004383047.1| - 0.068 12.7 0.0 0.12 11.9 0.0 1.4 2 0 0 2 2 2 0 Met-10+ like-protein Peripla_BP_2 PF01497.13 gi|330506620|ref|YP_004383048.1| - 7.1e-25 87.5 0.0 1e-24 87.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein GyrI-like PF06445.10 gi|330506621|ref|YP_004383049.1| - 7.4e-15 55.2 0.0 2.5e-14 53.5 0.0 1.9 1 1 0 1 1 1 1 GyrI-like small molecule binding domain MerR_1 PF13411.1 gi|330506621|ref|YP_004383049.1| - 4.5e-11 42.3 1.1 3.2e-10 39.6 0.0 2.4 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.18 gi|330506621|ref|YP_004383049.1| - 7.7e-08 31.7 1.8 1.9e-07 30.5 1.3 1.7 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.6 gi|330506621|ref|YP_004383049.1| - 0.00071 19.9 0.3 0.0016 18.7 0.2 1.5 1 0 0 1 1 1 1 MerR, DNA binding DUF362 PF04015.7 gi|330506622|ref|YP_004383050.1| - 6.8e-16 58.3 0.0 5.7e-14 52.0 0.0 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF362) DUF308 PF03729.8 gi|330506623|ref|YP_004383051.1| - 0.00044 20.1 5.3 0.00044 20.1 3.6 6.8 4 2 2 6 6 6 3 Short repeat of unknown function (DUF308) adh_short PF00106.20 gi|330506624|ref|YP_004383052.1| - 8.9e-34 116.8 0.1 1.3e-33 116.2 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|330506624|ref|YP_004383052.1| - 3.9e-14 52.9 0.0 5.1e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|330506624|ref|YP_004383052.1| - 1.7e-11 44.1 0.1 3.7e-11 43.0 0.1 1.5 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|330506624|ref|YP_004383052.1| - 0.00017 21.0 0.1 0.0021 17.5 0.0 2.0 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|330506624|ref|YP_004383052.1| - 0.00022 20.2 0.0 0.00026 19.9 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein ADH_zinc_N PF00107.21 gi|330506624|ref|YP_004383052.1| - 0.067 12.7 0.0 0.21 11.1 0.0 1.9 1 0 0 1 1 1 0 Zinc-binding dehydrogenase 3Beta_HSD PF01073.14 gi|330506624|ref|YP_004383052.1| - 0.077 11.6 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family 3HCDH_N PF02737.13 gi|330506624|ref|YP_004383052.1| - 0.14 11.7 0.1 0.27 10.8 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADC PF06314.6 gi|330506625|ref|YP_004383053.1| - 7.4e-40 136.7 0.0 9.2e-40 136.4 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Oxidored_FMN PF00724.15 gi|330506626|ref|YP_004383054.1| - 6e-82 275.3 0.0 7.7e-82 275.0 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox PF00070.22 gi|330506626|ref|YP_004383054.1| - 9e-12 45.2 4.4 4.8e-06 26.8 0.2 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|330506626|ref|YP_004383054.1| - 1.2e-10 41.2 2.6 1e-05 25.4 0.1 3.2 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|330506626|ref|YP_004383054.1| - 1.8e-10 41.0 5.3 6.2e-06 26.2 0.5 3.9 2 2 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|330506626|ref|YP_004383054.1| - 4.7e-08 31.9 3.5 6.6e-06 24.8 0.3 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|330506626|ref|YP_004383054.1| - 4.9e-08 33.2 1.1 0.00022 21.3 0.1 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|330506626|ref|YP_004383054.1| - 4.6e-07 29.0 2.2 4.9e-05 22.3 0.1 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.19 gi|330506626|ref|YP_004383054.1| - 1.2e-06 27.6 6.6 0.002 17.0 0.3 2.9 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|330506626|ref|YP_004383054.1| - 1.8e-06 27.2 2.6 0.0026 16.8 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|330506626|ref|YP_004383054.1| - 6.2e-06 25.3 4.6 0.00037 19.4 0.2 2.8 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|330506626|ref|YP_004383054.1| - 3.9e-05 22.9 1.9 4e-05 22.8 0.3 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Dus PF01207.12 gi|330506626|ref|YP_004383054.1| - 5.7e-05 22.1 0.0 9.8e-05 21.3 0.0 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Thi4 PF01946.12 gi|330506626|ref|YP_004383054.1| - 0.00011 21.4 3.5 0.015 14.3 0.2 2.4 2 0 0 2 2 2 2 Thi4 family 3HCDH_N PF02737.13 gi|330506626|ref|YP_004383054.1| - 0.00014 21.5 2.7 0.24 11.0 0.1 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|330506626|ref|YP_004383054.1| - 0.00027 21.1 1.0 0.099 12.9 0.1 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|330506626|ref|YP_004383054.1| - 0.00068 19.2 1.1 0.33 10.4 0.0 2.6 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|330506626|ref|YP_004383054.1| - 0.021 14.1 0.9 4.6 6.5 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|330506626|ref|YP_004383054.1| - 0.039 12.8 1.9 0.13 11.1 0.2 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_Gly3P_dh_N PF01210.18 gi|330506626|ref|YP_004383054.1| - 0.07 12.8 0.2 15 5.2 0.0 3.2 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|330506626|ref|YP_004383054.1| - 0.15 11.2 0.4 0.49 9.5 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|330506626|ref|YP_004383054.1| - 0.19 11.7 1.9 31 4.5 0.0 3.5 5 0 0 5 5 3 0 TrkA-N domain HTH_10 PF04967.7 gi|330506627|ref|YP_004383055.1| - 0.0034 16.9 0.2 0.0081 15.7 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|330506627|ref|YP_004383055.1| - 0.014 14.7 0.1 0.023 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|330506627|ref|YP_004383055.1| - 0.049 13.1 0.1 0.094 12.2 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF2481 PF10654.4 gi|330506627|ref|YP_004383055.1| - 0.075 12.7 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_23 PF13384.1 gi|330506627|ref|YP_004383055.1| - 0.1 12.2 0.1 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain AP_endonuc_2 PF01261.19 gi|330506627|ref|YP_004383055.1| - 0.11 11.7 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF1673 PF07895.6 gi|330506628|ref|YP_004383056.1| - 0.01 15.3 0.1 0.016 14.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) STT3 PF02516.9 gi|330506628|ref|YP_004383056.1| - 0.061 12.2 0.1 0.086 11.7 0.0 1.2 1 0 0 1 1 1 0 Oligosaccharyl transferase STT3 subunit HMA PF00403.21 gi|330506629|ref|YP_004383057.1| - 5.1e-17 61.7 0.0 5.9e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain Flavin_Reduct PF01613.13 gi|330506630|ref|YP_004383058.1| - 2.1e-06 27.6 0.0 2.2e-06 27.6 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Transposase_20 PF02371.11 gi|330506632|ref|YP_004383060.1| - 1.3e-25 89.3 0.1 2.3e-25 88.5 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|330506632|ref|YP_004383060.1| - 1.9e-24 85.9 0.0 3.2e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 Transposase Lectin_N PF03954.9 gi|330506632|ref|YP_004383060.1| - 0.032 13.6 0.0 0.38 10.1 0.0 2.2 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain OrfB_IS605 PF01385.14 gi|330506633|ref|YP_004383061.1| - 1.2e-39 136.0 0.0 2e-39 135.3 0.0 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330506633|ref|YP_004383061.1| - 1.5e-23 82.2 0.1 3.6e-23 81.0 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330506633|ref|YP_004383061.1| - 7.6e-10 37.9 0.8 2.9e-09 36.0 0.8 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain FYVE PF01363.16 gi|330506633|ref|YP_004383061.1| - 0.055 13.3 0.3 0.13 12.2 0.2 1.5 1 0 0 1 1 1 0 FYVE zinc finger DZR PF12773.2 gi|330506633|ref|YP_004383061.1| - 0.058 13.2 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|330506633|ref|YP_004383061.1| - 0.1 11.9 0.8 0.47 9.8 0.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding LSM PF01423.17 gi|330506636|ref|YP_004383064.1| - 0.0012 18.3 0.0 0.0038 16.7 0.0 1.7 1 1 0 1 1 1 1 LSM domain SSF PF00474.12 gi|330506637|ref|YP_004383065.1| - 5.2e-33 114.2 35.6 6.4e-31 107.3 24.7 2.9 1 1 0 1 1 1 1 Sodium:solute symporter family CcoS PF03597.10 gi|330506639|ref|YP_004383067.1| - 5.6 6.5 9.4 1.4 8.3 0.8 2.4 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type DUF3303 PF11746.3 gi|330506640|ref|YP_004383068.1| - 0.0036 17.6 0.0 0.006 16.9 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3303) Flavin_Reduct PF01613.13 gi|330506641|ref|YP_004383069.1| - 4.8e-30 104.4 0.0 5.4e-30 104.2 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Nitroreductase PF00881.19 gi|330506642|ref|YP_004383070.1| - 7.2e-33 113.7 0.0 9.5e-33 113.3 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|330506642|ref|YP_004383070.1| - 0.0024 17.0 0.2 0.043 12.9 0.1 2.6 2 1 0 2 2 2 1 Putative TM nitroreductase ABC_tran PF00005.22 gi|330506643|ref|YP_004383071.1| - 5.3e-51 172.5 0.1 2.7e-27 95.7 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|330506643|ref|YP_004383071.1| - 9.4e-08 32.3 0.6 1.1 9.2 0.1 4.1 3 1 0 3 3 3 2 AAA domain SbcCD_C PF13558.1 gi|330506643|ref|YP_004383071.1| - 1.7e-05 24.6 0.0 0.4 10.6 0.0 3.4 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|330506643|ref|YP_004383071.1| - 5.2e-05 22.5 6.2 0.092 11.9 0.0 3.5 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|330506643|ref|YP_004383071.1| - 6.7e-05 22.9 0.8 0.43 10.5 0.1 3.3 3 0 0 3 3 3 2 AAA ATPase domain AAA_15 PF13175.1 gi|330506643|ref|YP_004383071.1| - 7.1e-05 22.0 0.7 0.0019 17.3 0.0 2.9 4 0 0 4 4 4 1 AAA ATPase domain AAA_29 PF13555.1 gi|330506643|ref|YP_004383071.1| - 0.00012 21.5 2.8 0.2 11.2 0.0 2.7 3 0 0 3 3 2 2 P-loop containing region of AAA domain DUF258 PF03193.11 gi|330506643|ref|YP_004383071.1| - 0.00014 21.1 0.9 0.35 10.0 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|330506643|ref|YP_004383071.1| - 0.004 15.7 0.4 0.089 11.2 0.0 2.7 3 0 0 3 3 3 1 AAA domain NB-ARC PF00931.17 gi|330506643|ref|YP_004383071.1| - 0.0041 16.0 2.1 1.4 7.6 0.3 2.7 2 0 0 2 2 2 2 NB-ARC domain DUF87 PF01935.12 gi|330506643|ref|YP_004383071.1| - 0.0084 15.9 2.4 0.066 13.0 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|330506643|ref|YP_004383071.1| - 0.021 15.6 3.5 0.57 11.0 0.1 3.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|330506643|ref|YP_004383071.1| - 0.03 13.7 0.3 4.7 6.5 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_10 PF12846.2 gi|330506643|ref|YP_004383071.1| - 0.045 13.1 7.9 0.7 9.2 0.2 3.4 3 1 0 3 3 3 0 AAA-like domain AAA_23 PF13476.1 gi|330506643|ref|YP_004383071.1| - 0.052 13.8 0.0 1.6 9.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|330506643|ref|YP_004383071.1| - 0.073 13.3 2.4 5.1 7.4 0.5 3.0 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|330506643|ref|YP_004383071.1| - 0.12 11.9 0.2 7.7 6.0 0.0 2.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATP-synt_ab PF00006.20 gi|330506643|ref|YP_004383071.1| - 0.12 11.8 0.0 12 5.3 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.9 gi|330506643|ref|YP_004383071.1| - 0.12 12.0 1.1 3.8 7.1 0.2 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|330506643|ref|YP_004383071.1| - 0.16 11.8 0.8 3.1 7.6 0.1 2.6 2 0 0 2 2 2 0 AAA domain OrfB_Zn_ribbon PF07282.6 gi|330506643|ref|YP_004383071.1| - 0.18 11.5 0.8 0.35 10.5 0.6 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NACHT PF05729.7 gi|330506643|ref|YP_004383071.1| - 0.3 10.7 2.4 9.4 5.8 0.0 2.8 3 0 0 3 3 3 0 NACHT domain PRK PF00485.13 gi|330506643|ref|YP_004383071.1| - 0.32 10.5 1.6 16 5.0 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.18 gi|330506643|ref|YP_004383071.1| - 0.93 9.4 4.4 3.3 7.6 0.0 3.1 3 1 0 3 3 3 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|330506643|ref|YP_004383071.1| - 1.1 9.3 5.6 11 6.2 0.0 3.4 4 1 0 4 4 3 0 AAA domain Pro_isomerase PF00160.16 gi|330506644|ref|YP_004383072.1| - 0.00043 20.5 0.2 2.4 8.3 0.0 4.5 3 2 0 4 4 4 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Inhibitor_I78 PF11720.3 gi|330506644|ref|YP_004383072.1| - 0.043 13.5 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Peptidase inhibitor I78 family PASTA PF03793.14 gi|330506644|ref|YP_004383072.1| - 0.046 13.3 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 PASTA domain Fer2_4 PF13510.1 gi|330506644|ref|YP_004383072.1| - 0.058 13.1 0.1 0.43 10.4 0.0 2.3 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain DUF2102 PF09875.4 gi|330506645|ref|YP_004383073.1| - 4.8e-42 141.7 0.0 5.8e-42 141.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF2112 PF09885.4 gi|330506646|ref|YP_004383074.1| - 4.1e-59 198.3 0.0 4.7e-59 198.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) BcrAD_BadFG PF01869.15 gi|330506647|ref|YP_004383075.1| - 1.3e-64 218.0 4.0 1.8e-64 217.6 2.8 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.1 gi|330506647|ref|YP_004383075.1| - 1.5e-05 24.8 1.7 0.00026 20.8 0.3 3.0 2 1 0 2 2 2 1 Cell division protein FtsA Peptidase_M22 PF00814.20 gi|330506647|ref|YP_004383075.1| - 0.0013 18.2 0.0 0.61 9.5 0.0 2.4 2 0 0 2 2 2 2 Glycoprotease family FGGY_C PF02782.11 gi|330506647|ref|YP_004383075.1| - 0.0028 17.2 0.1 0.0078 15.8 0.1 1.7 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Hydant_A_N PF05378.8 gi|330506647|ref|YP_004383075.1| - 0.0071 15.8 0.9 0.0071 15.8 0.6 2.5 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|330506647|ref|YP_004383075.1| - 0.0078 14.5 2.2 0.2 9.9 0.2 2.6 3 0 0 3 3 3 1 MutL protein UPF0004 PF00919.15 gi|330506647|ref|YP_004383075.1| - 0.033 14.0 0.2 1 9.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein family UPF0004 bact-PGI_C PF10432.4 gi|330506647|ref|YP_004383075.1| - 0.037 13.7 0.0 0.51 10.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial phospho-glucose isomerase C-terminal region FGGY_N PF00370.16 gi|330506647|ref|YP_004383075.1| - 0.11 11.8 0.2 1.2 8.3 0.2 2.2 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain DUF2113 PF09886.4 gi|330506648|ref|YP_004383076.1| - 1.4e-56 190.6 0.2 1.6e-56 190.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) MCR_C PF04609.7 gi|330506649|ref|YP_004383077.1| - 1.1e-106 355.5 0.1 1.3e-106 355.3 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C HR1 PF02185.11 gi|330506651|ref|YP_004383079.1| - 0.041 13.6 0.2 0.088 12.5 0.1 1.6 1 0 0 1 1 1 0 Hr1 repeat Osmo_CC PF08946.5 gi|330506651|ref|YP_004383079.1| - 0.78 9.8 5.0 0.56 10.2 1.1 2.4 2 0 0 2 2 2 0 Osmosensory transporter coiled coil SBP_bac_11 PF13531.1 gi|330506652|ref|YP_004383080.1| - 3.2e-15 56.4 0.1 4.9e-15 55.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein VWA_2 PF13519.1 gi|330506652|ref|YP_004383080.1| - 4.4e-15 56.2 0.0 9.6e-15 55.1 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|330506652|ref|YP_004383080.1| - 9.9e-15 54.7 0.1 2e-14 53.7 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|330506652|ref|YP_004383080.1| - 0.02 14.5 0.0 0.24 11.0 0.0 2.4 2 1 0 2 2 2 0 von Willebrand factor type A domain Beta-Casp PF10996.3 gi|330506652|ref|YP_004383080.1| - 0.037 13.9 0.0 3.6 7.5 0.0 2.6 2 0 0 2 2 2 0 Beta-Casp domain TelA PF05816.6 gi|330506653|ref|YP_004383081.1| - 1.4e-79 267.2 21.0 1.7e-79 266.9 14.5 1.1 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) IGR PF09597.5 gi|330506653|ref|YP_004383081.1| - 0.082 12.8 1.1 25 4.8 0.0 3.2 3 0 0 3 3 3 0 IGR protein motif DUF972 PF06156.8 gi|330506653|ref|YP_004383081.1| - 8.5 6.7 13.9 15 5.9 0.1 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF972) SPOUT_MTase PF02590.12 gi|330506654|ref|YP_004383082.1| - 1.6e-48 164.3 0.0 1.8e-48 164.2 0.0 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase SPOUT_MTase_2 PF14419.1 gi|330506654|ref|YP_004383082.1| - 0.0026 16.9 0.0 0.004 16.3 0.0 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP Imm14 PF15428.1 gi|330506655|ref|YP_004383083.1| - 0.12 12.8 0.0 0.32 11.3 0.0 1.7 2 0 0 2 2 2 0 Immunity protein 14 HMGL-like PF00682.14 gi|330506658|ref|YP_004383086.1| - 1.6e-64 217.8 3.8 1.6e-64 217.8 2.6 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|330506658|ref|YP_004383086.1| - 3.1e-32 111.1 2.2 9e-32 109.6 1.5 1.8 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain IMPDH PF00478.20 gi|330506658|ref|YP_004383086.1| - 0.003 16.4 1.0 0.0057 15.6 0.3 1.5 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain TPP_enzyme_N PF02776.13 gi|330506659|ref|YP_004383087.1| - 4.6e-63 211.7 0.1 1.2e-62 210.4 0.1 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|330506659|ref|YP_004383087.1| - 9e-51 171.2 0.1 1.7e-50 170.3 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|330506659|ref|YP_004383087.1| - 4.1e-50 169.3 0.0 1.5e-49 167.5 0.0 2.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|330506659|ref|YP_004383087.1| - 0.005 16.3 0.2 0.013 15.0 0.1 1.6 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALS_ss_C PF10369.4 gi|330506660|ref|YP_004383088.1| - 6.6e-33 112.2 6.3 3e-31 106.9 3.2 2.1 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|330506660|ref|YP_004383088.1| - 2e-18 65.9 1.8 2.5e-17 62.4 0.1 2.6 2 1 1 3 3 3 1 ACT domain ACT PF01842.20 gi|330506660|ref|YP_004383088.1| - 1.2e-13 50.1 6.4 2.8e-12 45.8 0.1 2.9 1 1 2 3 3 3 2 ACT domain ACT_4 PF13291.1 gi|330506660|ref|YP_004383088.1| - 3.2e-07 30.6 0.9 3.2e-07 30.6 0.6 2.1 2 1 0 2 2 2 1 ACT domain NIL PF09383.5 gi|330506660|ref|YP_004383088.1| - 6.3e-07 28.8 0.2 0.0017 17.8 0.1 2.3 2 0 0 2 2 2 2 NIL domain Saccharop_dh_N PF04455.7 gi|330506660|ref|YP_004383088.1| - 9.6e-05 22.4 0.4 0.013 15.6 0.0 2.3 1 1 0 2 2 2 1 LOR/SDH bifunctional enzyme conserved region ACT_6 PF13740.1 gi|330506660|ref|YP_004383088.1| - 0.0012 18.5 2.3 1.1 9.0 0.2 3.0 2 1 0 2 2 2 2 ACT domain DUF4423 PF14394.1 gi|330506660|ref|YP_004383088.1| - 0.0015 18.1 2.4 0.0035 16.8 0.5 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) Acylphosphatase PF00708.13 gi|330506660|ref|YP_004383088.1| - 0.0026 17.8 0.1 0.61 10.2 0.0 2.3 2 0 0 2 2 2 1 Acylphosphatase KH_1 PF00013.24 gi|330506660|ref|YP_004383088.1| - 0.0093 15.5 3.6 0.11 12.1 1.5 2.5 2 1 0 2 2 2 1 KH domain SLS PF14611.1 gi|330506660|ref|YP_004383088.1| - 0.068 12.5 2.2 0.41 10.0 0.3 2.1 1 1 1 2 2 2 0 Mitochondrial inner-membrane-bound regulator Alkyl_sulf_C PF14864.1 gi|330506660|ref|YP_004383088.1| - 0.08 12.9 0.0 13 5.7 0.0 2.4 2 1 0 2 2 2 0 Alkyl sulfatase C-terminal SBDS_C PF09377.5 gi|330506660|ref|YP_004383088.1| - 0.29 10.8 3.3 4.7 6.9 0.5 2.1 1 1 1 2 2 2 0 SBDS protein C-terminal domain IlvN PF07991.7 gi|330506661|ref|YP_004383089.1| - 2.3e-71 238.5 0.2 3e-71 238.1 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|330506661|ref|YP_004383089.1| - 1.8e-54 183.5 0.2 2.7e-54 183.0 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|330506661|ref|YP_004383089.1| - 5.8e-07 28.8 0.0 9.6e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|330506661|ref|YP_004383089.1| - 1.6e-05 24.8 0.0 3.2e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|330506661|ref|YP_004383089.1| - 0.00021 21.6 0.1 0.00046 20.5 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|330506661|ref|YP_004383089.1| - 0.048 13.4 0.0 0.09 12.6 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF1829 PF08862.5 gi|330506662|ref|YP_004383090.1| - 7e-25 87.1 0.0 1.1e-24 86.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF1829 TPR_11 PF13414.1 gi|330506663|ref|YP_004383091.1| - 8.4e-32 108.6 7.5 8e-13 47.8 0.1 4.4 4 0 0 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|330506663|ref|YP_004383091.1| - 4.3e-31 105.2 3.9 1.9e-06 27.2 0.0 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330506663|ref|YP_004383091.1| - 2.9e-30 104.2 9.4 6.8e-11 42.5 1.6 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330506663|ref|YP_004383091.1| - 9.5e-27 90.7 7.2 1.3e-05 24.7 0.0 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330506663|ref|YP_004383091.1| - 3.7e-22 76.7 14.2 6.9e-06 26.2 0.6 6.2 2 2 4 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330506663|ref|YP_004383091.1| - 4.9e-22 78.0 21.6 9.7e-09 35.4 0.6 4.1 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330506663|ref|YP_004383091.1| - 5.9e-20 70.9 5.5 4.4e-11 42.4 0.3 4.4 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330506663|ref|YP_004383091.1| - 1.1e-19 68.6 2.4 0.00065 19.3 0.0 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330506663|ref|YP_004383091.1| - 6.8e-19 66.4 1.4 4.1e-06 26.5 0.1 4.8 5 1 0 5 5 4 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330506663|ref|YP_004383091.1| - 5.7e-18 64.6 8.7 7.5e-08 32.2 0.1 4.6 2 2 3 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330506663|ref|YP_004383091.1| - 4.4e-12 45.6 6.1 0.3 11.6 0.0 6.2 6 0 0 6 6 6 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|330506663|ref|YP_004383091.1| - 5.9e-12 45.5 1.2 5.4e-07 29.6 0.0 3.6 2 2 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.1 gi|330506663|ref|YP_004383091.1| - 1.4e-09 37.7 0.1 0.044 13.6 0.0 5.0 5 1 0 5 5 5 2 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|330506663|ref|YP_004383091.1| - 1.9e-07 30.2 1.8 0.00027 19.8 0.1 2.4 1 1 0 2 2 2 2 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|330506663|ref|YP_004383091.1| - 4.2e-07 29.8 3.6 1.2 9.0 0.1 4.2 1 1 2 4 4 4 4 Domain of Unknown Function (DUF3856) TPR_7 PF13176.1 gi|330506663|ref|YP_004383091.1| - 1.5e-06 27.5 5.9 9.3 6.3 0.0 6.1 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_20 PF14561.1 gi|330506663|ref|YP_004383091.1| - 5.2e-05 23.2 6.9 0.26 11.4 0.3 4.0 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330506663|ref|YP_004383091.1| - 8e-05 22.4 5.7 4.2 7.4 0.2 5.4 6 0 0 6 6 6 1 Tetratricopeptide repeat BTAD PF03704.12 gi|330506663|ref|YP_004383091.1| - 0.00021 21.6 2.9 0.54 10.5 2.6 3.3 2 2 0 2 2 2 1 Bacterial transcriptional activator domain TOM20_plant PF06552.7 gi|330506663|ref|YP_004383091.1| - 0.00023 20.8 0.1 4.9 6.6 0.0 3.4 3 0 0 3 3 3 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_4 PF07721.9 gi|330506663|ref|YP_004383091.1| - 0.00077 19.6 10.7 2.3 8.8 0.2 4.9 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|330506663|ref|YP_004383091.1| - 0.0032 16.5 6.3 0.0064 15.5 2.9 2.1 1 1 1 2 2 2 1 Tetratricopeptide repeat NRDE-2 PF08424.5 gi|330506663|ref|YP_004383091.1| - 0.011 14.6 0.0 0.04 12.7 0.0 1.8 1 1 1 2 2 2 0 NRDE-2, necessary for RNA interference MIT PF04212.13 gi|330506663|ref|YP_004383091.1| - 0.032 14.1 0.8 5.2 7.0 0.0 3.6 3 1 0 3 3 3 0 MIT (microtubule interacting and transport) domain Apc5 PF12862.2 gi|330506663|ref|YP_004383091.1| - 0.044 13.6 0.2 1.3 8.8 0.0 3.0 2 1 1 3 3 3 0 Anaphase-promoting complex subunit 5 Coatomer_E PF04733.9 gi|330506663|ref|YP_004383091.1| - 0.11 11.7 2.1 16 4.5 0.1 3.1 2 1 1 3 3 3 0 Coatomer epsilon subunit SHNi-TPR PF10516.4 gi|330506663|ref|YP_004383091.1| - 1 8.6 6.8 0.95 8.7 0.0 3.6 5 0 0 5 5 5 0 SHNi-TPR AAA_22 PF13401.1 gi|330506665|ref|YP_004383093.1| - 0.0034 17.5 0.7 0.018 15.2 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA PF00004.24 gi|330506665|ref|YP_004383093.1| - 0.25 11.5 1.0 6.5 6.9 0.0 3.1 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Pyridox_oxidase PF01243.15 gi|330506666|ref|YP_004383094.1| - 2.3e-08 33.9 0.0 3.1e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|330506666|ref|YP_004383094.1| - 0.0042 16.6 0.0 0.01 15.3 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF447) DNA_pol_B PF00136.16 gi|330506667|ref|YP_004383095.1| - 1.8e-24 86.4 0.1 6.5e-12 44.9 0.0 3.0 1 1 1 2 2 2 2 DNA polymerase family B Response_reg PF00072.19 gi|330506668|ref|YP_004383096.1| - 8e-30 103.1 0.2 9.1e-30 102.9 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.14 gi|330506668|ref|YP_004383096.1| - 0.057 13.2 0.0 0.081 12.7 0.0 1.2 1 0 0 1 1 1 0 B12 binding domain Acylphosphatase PF00708.13 gi|330506669|ref|YP_004383097.1| - 1.8e-10 40.7 0.0 2.8e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Acylphosphatase Exo_endo_phos PF03372.18 gi|330506670|ref|YP_004383098.1| - 1e-27 97.7 0.0 1.2e-27 97.4 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|330506670|ref|YP_004383098.1| - 9.3e-12 44.6 0.0 1.2e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase DUF1616 PF07760.6 gi|330506671|ref|YP_004383099.1| - 4.5e-30 104.7 1.6 9.3e-30 103.7 1.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) Y_Y_Y PF07495.8 gi|330506671|ref|YP_004383099.1| - 5.9e-11 41.9 0.0 0.00053 19.6 0.0 4.2 4 0 0 4 4 4 2 Y_Y_Y domain PKD PF00801.15 gi|330506671|ref|YP_004383099.1| - 3e-09 36.4 1.8 0.2 11.4 0.2 4.6 4 0 0 4 4 4 4 PKD domain DUF4399 PF14347.1 gi|330506671|ref|YP_004383099.1| - 5.8e-06 26.2 0.0 1.8 8.6 0.0 4.4 4 0 0 4 4 4 2 Domain of unknown function (DUF4399) Big_3_4 PF13754.1 gi|330506671|ref|YP_004383099.1| - 4.2e-05 23.7 11.3 0.92 9.8 0.0 4.9 5 0 0 5 5 5 3 Bacterial Ig-like domain (group 3) BiPBP_C PF06832.7 gi|330506671|ref|YP_004383099.1| - 0.034 14.0 0.8 1.2 9.0 0.0 3.4 4 0 0 4 4 4 0 Penicillin-Binding Protein C-terminus Family DUF572 PF04502.8 gi|330506671|ref|YP_004383099.1| - 0.6 9.2 9.7 0.93 8.6 6.7 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF572) Glycos_transf_1 PF00534.15 gi|330506672|ref|YP_004383100.1| - 4.9e-31 107.4 0.0 7.9e-31 106.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330506672|ref|YP_004383100.1| - 2.1e-17 63.5 0.0 4.9e-17 62.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|330506672|ref|YP_004383100.1| - 1.9e-11 44.0 0.0 4.2e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|330506672|ref|YP_004383100.1| - 4.6e-11 43.1 1.2 1.6e-07 31.5 0.2 3.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|330506672|ref|YP_004383100.1| - 1.1e-08 35.0 1.2 1.2e-07 31.6 0.8 2.4 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|330506672|ref|YP_004383100.1| - 0.013 15.3 0.0 0.054 13.3 0.0 2.0 1 1 1 2 2 2 0 Glycosyl transferase 4-like UPF0104 PF03706.8 gi|330506673|ref|YP_004383101.1| - 2.7e-37 128.6 35.3 3.5e-37 128.2 24.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) SecD_SecF PF02355.11 gi|330506674|ref|YP_004383102.1| - 2.8e-14 52.7 14.4 1.7e-12 46.9 10.0 2.2 1 1 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|330506674|ref|YP_004383102.1| - 2e-06 26.6 0.3 5.7e-06 25.2 0.2 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif DUF1453 PF07301.6 gi|330506674|ref|YP_004383102.1| - 1 9.2 6.9 0.11 12.4 0.8 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1453) SecD_SecF PF02355.11 gi|330506675|ref|YP_004383103.1| - 8.2e-28 96.8 9.7 1.2e-27 96.3 6.7 1.2 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|330506675|ref|YP_004383103.1| - 1.3e-05 24.1 0.0 3e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|330506675|ref|YP_004383103.1| - 0.00013 20.0 6.4 0.00019 19.5 4.4 1.1 1 0 0 1 1 1 1 Patched family MMPL PF03176.10 gi|330506675|ref|YP_004383103.1| - 0.23 10.1 16.6 0.011 14.4 7.5 1.7 2 0 0 2 2 2 0 MMPL family PC_rep PF01851.17 gi|330506675|ref|YP_004383103.1| - 0.61 10.4 3.1 16 5.9 0.6 2.8 2 0 0 2 2 2 0 Proteasome/cyclosome repeat SseC PF04888.7 gi|330506675|ref|YP_004383103.1| - 5.4 6.2 8.9 7.9 5.7 6.2 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family Methyltransf_6 PF03737.10 gi|330506676|ref|YP_004383104.1| - 2.4e-37 128.1 0.6 2.4e-37 128.1 0.4 2.0 2 0 0 2 2 2 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|330506676|ref|YP_004383104.1| - 9.7e-20 70.9 5.7 1.7e-19 70.1 3.9 1.4 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|330506676|ref|YP_004383104.1| - 3.8e-07 29.2 3.1 3.8e-07 29.2 2.1 1.7 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase HMGL-like PF00682.14 gi|330506676|ref|YP_004383104.1| - 1.2e-06 28.3 5.1 1.9e-05 24.4 0.1 2.2 1 1 1 2 2 2 2 HMGL-like His_biosynth PF00977.16 gi|330506676|ref|YP_004383104.1| - 6.9e-06 25.4 2.3 2e-05 23.9 0.5 2.0 1 1 0 2 2 2 1 Histidine biosynthesis protein PEP_mutase PF13714.1 gi|330506676|ref|YP_004383104.1| - 8.5e-06 25.1 1.9 0.0036 16.5 0.1 2.2 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase TMP-TENI PF02581.12 gi|330506676|ref|YP_004383104.1| - 3e-05 23.2 2.7 7.1e-05 21.9 0.3 2.3 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|330506676|ref|YP_004383104.1| - 0.008 15.0 3.4 0.008 15.0 2.4 2.1 1 1 1 2 2 2 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|330506676|ref|YP_004383104.1| - 0.0093 15.0 5.4 0.018 14.1 3.7 1.5 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|330506676|ref|YP_004383104.1| - 0.011 14.6 0.3 0.017 13.9 0.2 1.4 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|330506676|ref|YP_004383104.1| - 0.012 14.7 5.2 0.021 14.0 3.6 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase Trp_syntA PF00290.15 gi|330506676|ref|YP_004383104.1| - 0.015 13.8 4.2 0.053 12.0 1.1 2.6 1 1 1 3 3 3 0 Tryptophan synthase alpha chain DUF561 PF04481.7 gi|330506676|ref|YP_004383104.1| - 0.07 12.0 2.5 0.11 11.4 0.7 2.1 2 2 0 2 2 2 0 Protein of unknown function (DUF561) PcrB PF01884.12 gi|330506676|ref|YP_004383104.1| - 0.072 12.3 6.8 0.33 10.1 0.9 3.1 1 1 2 3 3 3 0 PcrB family IGPS PF00218.16 gi|330506676|ref|YP_004383104.1| - 0.11 11.5 2.9 0.57 9.1 2.0 2.0 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase DAP_epimerase PF01678.14 gi|330506677|ref|YP_004383105.1| - 2e-56 189.1 0.1 3e-33 114.3 0.0 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|330506677|ref|YP_004383105.1| - 7.9e-05 21.6 0.0 0.00031 19.6 0.0 1.8 2 0 0 2 2 2 1 Proline racemase DHH PF01368.15 gi|330506679|ref|YP_004383107.1| - 2.6e-12 46.6 0.0 4.2e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|330506679|ref|YP_004383107.1| - 8.3e-12 44.6 0.4 2.3e-11 43.2 0.3 1.8 1 0 0 1 1 1 1 DHHA1 domain SelA PF03841.8 gi|330506679|ref|YP_004383107.1| - 0.026 13.2 0.1 1.4 7.5 0.0 2.2 2 0 0 2 2 2 0 L-seryl-tRNA selenium transferase CDC45 PF02724.9 gi|330506679|ref|YP_004383107.1| - 0.054 11.5 0.1 0.074 11.0 0.1 1.2 1 0 0 1 1 1 0 CDC45-like protein Phosphodiest PF01663.17 gi|330506681|ref|YP_004383109.1| - 3.2e-14 53.0 0.0 6.1e-07 29.0 0.0 2.1 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|330506681|ref|YP_004383109.1| - 1.9e-10 40.4 0.0 7.7e-06 25.3 0.0 3.0 3 0 0 3 3 3 3 Sulfatase Metalloenzyme PF01676.13 gi|330506681|ref|YP_004383109.1| - 3.7e-05 23.2 0.0 0.00012 21.5 0.0 2.0 2 1 0 2 2 2 1 Metalloenzyme superfamily Lambda_Kil PF06301.6 gi|330506682|ref|YP_004383110.1| - 0.06 12.7 0.0 0.097 12.1 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage lambda Kil protein Cdc6_C PF09079.6 gi|330506684|ref|YP_004383112.1| - 0.0023 17.6 0.1 0.0057 16.3 0.1 1.6 1 0 0 1 1 1 1 CDC6, C terminal PaaX PF07848.7 gi|330506684|ref|YP_004383112.1| - 0.039 13.9 0.1 0.074 13.0 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein Fe_dep_repress PF01325.14 gi|330506684|ref|YP_004383112.1| - 0.078 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TPR_1 PF00515.23 gi|330506685|ref|YP_004383113.1| - 3.2e-101 327.2 23.2 4.5e-08 32.3 0.1 18.1 19 0 0 19 19 18 17 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330506685|ref|YP_004383113.1| - 2.1e-100 328.4 40.7 1.4e-12 47.0 0.2 11.2 6 3 3 11 11 11 11 TPR repeat TPR_2 PF07719.12 gi|330506685|ref|YP_004383113.1| - 3.3e-99 317.0 36.9 3.3e-07 29.7 0.2 18.8 19 0 0 19 19 19 17 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330506685|ref|YP_004383113.1| - 4.1e-86 282.1 37.5 7.4e-11 42.4 0.1 11.6 7 2 5 12 12 12 12 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330506685|ref|YP_004383113.1| - 9.5e-72 231.5 28.2 0.0001 21.7 0.0 17.9 14 4 4 18 18 18 16 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330506685|ref|YP_004383113.1| - 6e-65 215.5 43.7 8e-10 38.9 0.2 11.4 6 2 6 12 12 12 12 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330506685|ref|YP_004383113.1| - 5e-63 203.7 40.9 0.00011 22.4 0.4 17.7 1 1 17 18 18 18 17 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330506685|ref|YP_004383113.1| - 3.5e-60 195.2 36.6 4.4e-05 23.3 0.0 19.1 19 0 0 19 19 19 14 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330506685|ref|YP_004383113.1| - 1.1e-53 179.0 44.9 9.5e-09 35.0 0.1 12.3 2 1 14 16 16 16 16 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330506685|ref|YP_004383113.1| - 1e-41 140.6 26.8 3.1e-06 26.9 0.0 11.6 2 2 10 13 13 13 10 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330506685|ref|YP_004383113.1| - 1.7e-37 125.2 34.7 0.0013 19.0 0.2 16.1 18 0 0 18 18 16 8 Tetratricopeptide repeat Apc3 PF12895.2 gi|330506685|ref|YP_004383113.1| - 8.8e-31 105.8 11.7 0.01 15.9 0.0 9.1 4 3 7 11 11 11 10 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|330506685|ref|YP_004383113.1| - 3.1e-30 101.5 34.2 0.01 15.5 0.1 15.5 14 3 1 15 15 15 6 Tetratricopeptide repeat NARP1 PF12569.3 gi|330506685|ref|YP_004383113.1| - 7.2e-15 54.7 9.1 0.0098 14.6 0.0 8.1 2 2 6 10 10 10 3 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|330506685|ref|YP_004383113.1| - 2.6e-14 52.9 26.4 1.2e-05 24.5 2.9 5.8 2 2 2 6 6 6 6 Tetratricopeptide repeat TPR_20 PF14561.1 gi|330506685|ref|YP_004383113.1| - 3.9e-14 52.5 26.1 0.0016 18.5 0.3 9.2 6 3 5 11 11 10 4 Tetratricopeptide repeat BTAD PF03704.12 gi|330506685|ref|YP_004383113.1| - 2.4e-11 44.1 25.1 9.1e-05 22.7 0.7 7.3 4 3 2 7 7 7 2 Bacterial transcriptional activator domain TPR_10 PF13374.1 gi|330506685|ref|YP_004383113.1| - 2.7e-11 42.9 45.7 0.0051 16.6 0.8 11.9 14 0 0 14 14 12 4 Tetratricopeptide repeat TPR_4 PF07721.9 gi|330506685|ref|YP_004383113.1| - 1.5e-10 40.4 43.6 0.0086 16.4 0.7 11.4 14 0 0 14 14 9 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330506685|ref|YP_004383113.1| - 4e-10 39.4 29.4 0.013 15.3 0.0 12.3 10 4 4 14 14 13 1 Fis1 C-terminal tetratricopeptide repeat TPR_3 PF07720.7 gi|330506685|ref|YP_004383113.1| - 2.6e-08 33.4 9.7 0.0041 16.8 0.0 6.4 7 0 0 7 7 6 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|330506685|ref|YP_004383113.1| - 5.5e-08 32.8 22.4 0.0073 16.2 1.3 7.3 4 3 0 6 6 6 2 Tetratricopeptide repeat ChAPs PF09295.5 gi|330506685|ref|YP_004383113.1| - 1.6e-07 30.4 0.0 0.014 14.1 0.0 3.8 2 2 1 4 4 4 2 ChAPs (Chs5p-Arf1p-binding proteins) Coatomer_E PF04733.9 gi|330506685|ref|YP_004383113.1| - 2.3e-06 27.0 6.0 0.93 8.6 0.2 5.1 4 1 1 5 5 5 3 Coatomer epsilon subunit DUF3856 PF12968.2 gi|330506685|ref|YP_004383113.1| - 4.6e-06 26.5 12.7 4.6 7.0 0.0 7.9 6 5 2 8 8 7 1 Domain of Unknown Function (DUF3856) TOM20_plant PF06552.7 gi|330506685|ref|YP_004383113.1| - 1.7e-05 24.4 0.2 1.2 8.7 0.0 5.4 5 2 1 6 6 5 1 Plant specific mitochondrial import receptor subunit TOM20 FAT PF02259.18 gi|330506685|ref|YP_004383113.1| - 0.0023 16.9 2.3 2 7.3 0.0 4.6 2 2 1 4 4 4 1 FAT domain SNAP PF14938.1 gi|330506685|ref|YP_004383113.1| - 0.013 14.6 10.2 4.7 6.2 0.0 5.8 4 2 3 7 7 7 0 Soluble NSF attachment protein, SNAP MIT PF04212.13 gi|330506685|ref|YP_004383113.1| - 0.028 14.2 16.5 11 6.0 0.1 8.6 10 2 1 11 11 9 0 MIT (microtubule interacting and transport) domain PPR_3 PF13812.1 gi|330506685|ref|YP_004383113.1| - 0.097 12.9 0.4 18 5.9 0.0 4.6 4 0 0 4 4 3 0 Pentatricopeptide repeat domain CTP-dep_RFKase PF01982.11 gi|330506686|ref|YP_004383114.1| - 2.9e-38 130.1 0.0 4.6e-38 129.5 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function DUF120 PHP PF02811.14 gi|330506687|ref|YP_004383115.1| - 4.8e-13 49.2 0.0 1.2e-12 47.9 0.0 1.7 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|330506687|ref|YP_004383115.1| - 5.8e-13 48.1 1.0 1.1e-12 47.2 0.7 1.5 1 0 0 1 1 1 1 PHP-associated Aconitase PF00330.15 gi|330506688|ref|YP_004383116.1| - 1.9e-86 290.4 0.0 5.1e-57 193.3 0.0 2.3 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) MTS PF05175.9 gi|330506689|ref|YP_004383117.1| - 0.0023 17.3 0.0 0.0044 16.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|330506689|ref|YP_004383117.1| - 0.0024 17.9 0.1 0.0056 16.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330506689|ref|YP_004383117.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) UPF0104 PF03706.8 gi|330506690|ref|YP_004383118.1| - 3.4e-36 125.0 33.1 4.4e-36 124.6 22.9 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) KOW PF00467.24 gi|330506691|ref|YP_004383119.1| - 0.24 11.1 1.2 0.24 11.1 0.1 1.7 3 0 0 3 3 3 0 KOW motif ThiI PF02568.9 gi|330506692|ref|YP_004383120.1| - 5.8e-58 195.5 0.1 9.1e-58 194.9 0.1 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|330506692|ref|YP_004383120.1| - 1e-16 61.1 0.0 2e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|330506692|ref|YP_004383120.1| - 2.4e-07 30.2 0.1 0.016 14.4 0.0 2.9 1 1 1 3 3 3 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|330506692|ref|YP_004383120.1| - 0.014 13.9 0.0 0.028 12.9 0.0 1.5 1 0 0 1 1 1 0 tRNA methyl transferase Asn_synthase PF00733.16 gi|330506692|ref|YP_004383120.1| - 0.13 11.6 0.0 0.3 10.5 0.0 1.7 1 1 0 1 1 1 0 Asparagine synthase KGG PF10685.4 gi|330506693|ref|YP_004383121.1| - 6.4e-05 22.7 2.9 0.19 11.7 0.0 2.6 2 0 0 2 2 2 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|330506693|ref|YP_004383121.1| - 0.028 14.6 9.3 0.093 13.0 6.4 1.7 1 1 0 1 1 1 0 Small hydrophilic plant seed protein SASP PF00269.15 gi|330506693|ref|YP_004383121.1| - 0.093 12.6 7.0 4 7.3 4.9 2.1 1 1 0 1 1 1 0 Small, acid-soluble spore proteins, alpha/beta type LigD_N PF13298.1 gi|330506694|ref|YP_004383122.1| - 1.8e-42 143.6 0.0 2.5e-42 143.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) BPD_transp_1 PF00528.17 gi|330506695|ref|YP_004383123.1| - 0.00026 20.5 0.5 0.00033 20.2 0.3 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.16 gi|330506695|ref|YP_004383123.1| - 1.9 8.2 6.0 2.4 7.9 4.2 1.1 1 0 0 1 1 1 0 FtsX-like permease family Acylphosphatase PF00708.13 gi|330506696|ref|YP_004383124.1| - 1e-08 35.1 0.0 1.7e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase DUF4552 PF15089.1 gi|330506696|ref|YP_004383124.1| - 0.0029 16.5 0.7 0.019 13.8 0.5 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4552) NPV_P10 PF05531.7 gi|330506696|ref|YP_004383124.1| - 0.36 11.0 3.4 15 5.8 2.4 2.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein XhlA PF10779.4 gi|330506696|ref|YP_004383124.1| - 0.89 9.5 5.6 49 3.9 3.1 3.2 2 1 0 2 2 2 0 Haemolysin XhlA DUF39 PF01837.11 gi|330506697|ref|YP_004383125.1| - 1.1e-109 366.2 0.0 1.2e-109 366.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_7 PF12838.2 gi|330506697|ref|YP_004383125.1| - 7.2e-07 29.4 10.1 5.3e-06 26.7 7.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330506697|ref|YP_004383125.1| - 7.6e-07 28.4 11.2 0.0036 16.8 0.3 3.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330506697|ref|YP_004383125.1| - 9.9e-07 28.4 10.5 2.1e-06 27.4 7.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330506697|ref|YP_004383125.1| - 2.4e-06 27.1 10.2 1.1e-05 25.1 2.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330506697|ref|YP_004383125.1| - 2.3e-05 24.0 12.0 0.0039 17.0 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330506697|ref|YP_004383125.1| - 9.7e-05 22.5 10.5 0.0002 21.5 7.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330506697|ref|YP_004383125.1| - 0.0006 20.4 6.3 0.44 11.3 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_11 PF13247.1 gi|330506697|ref|YP_004383125.1| - 0.0031 17.3 4.5 0.0061 16.4 3.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330506697|ref|YP_004383125.1| - 0.0048 17.1 13.9 0.057 13.7 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330506697|ref|YP_004383125.1| - 0.0057 16.4 10.5 0.071 12.9 7.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330506697|ref|YP_004383125.1| - 0.017 15.1 11.6 0.055 13.4 8.3 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330506697|ref|YP_004383125.1| - 0.24 11.8 7.7 1.7 9.1 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330506697|ref|YP_004383125.1| - 2.3 8.6 12.3 4.5 7.7 1.7 2.4 1 1 3 4 4 4 0 4Fe-4S dicluster domain GMP_synt_C PF00958.17 gi|330506698|ref|YP_004383126.1| - 2.5e-32 110.4 0.0 4.7e-32 109.5 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|330506698|ref|YP_004383126.1| - 2.6e-10 39.6 0.0 6.4e-07 28.5 0.0 2.2 2 0 0 2 2 2 2 NAD synthase QueC PF06508.8 gi|330506698|ref|YP_004383126.1| - 3.1e-05 23.3 0.0 0.00028 20.2 0.0 2.0 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|330506698|ref|YP_004383126.1| - 9.3e-05 21.1 0.1 0.0076 14.8 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase ThiI PF02568.9 gi|330506698|ref|YP_004383126.1| - 9.9e-05 21.8 0.0 0.00041 19.8 0.0 2.1 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|330506698|ref|YP_004383126.1| - 0.00028 20.4 0.0 0.00045 19.7 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|330506698|ref|YP_004383126.1| - 0.093 12.2 0.0 0.47 9.9 0.0 1.9 2 0 0 2 2 2 0 PP-loop family GlutR_dimer PF00745.15 gi|330506698|ref|YP_004383126.1| - 0.84 9.6 3.1 2 8.4 0.3 2.6 2 0 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain DUF381 PF04038.7 gi|330506699|ref|YP_004383127.1| - 3.1e-19 68.7 0.2 3.7e-19 68.5 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|330506699|ref|YP_004383127.1| - 0.13 11.6 0.3 0.19 11.2 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF372) CDP-OH_P_transf PF01066.16 gi|330506700|ref|YP_004383128.1| - 5.1e-12 45.9 10.4 5.1e-12 45.9 7.2 2.8 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF3488 PF11992.3 gi|330506700|ref|YP_004383128.1| - 0.0035 16.0 7.2 0.0035 16.0 5.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3488) PS_Dcarbxylase PF02666.10 gi|330506701|ref|YP_004383129.1| - 1.3e-26 93.2 0.2 3.2e-23 82.1 0.0 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase Biotin_lipoyl PF00364.17 gi|330506701|ref|YP_004383129.1| - 0.0073 15.9 0.1 13 5.5 0.0 3.4 3 1 1 4 4 4 2 Biotin-requiring enzyme RnfC_N PF13375.1 gi|330506701|ref|YP_004383129.1| - 0.0085 15.7 0.8 1.2 8.9 0.0 3.0 1 1 2 3 3 3 1 RnfC Barrel sandwich hybrid domain Apocytochr_F_C PF01333.14 gi|330506701|ref|YP_004383129.1| - 0.015 15.1 0.0 1.8 8.4 0.0 2.3 1 1 1 2 2 2 0 Apocytochrome F, C-terminal Peptidase_M23 PF01551.17 gi|330506701|ref|YP_004383129.1| - 0.024 14.6 0.0 0.87 9.6 0.0 3.0 1 1 2 3 3 3 0 Peptidase family M23 eIF-1a PF01176.14 gi|330506701|ref|YP_004383129.1| - 0.042 13.2 0.0 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Exosortase_EpsH PF09721.5 gi|330506702|ref|YP_004383130.1| - 3.5e-42 144.4 30.8 4.3e-42 144.1 21.3 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Peptidase_S8 PF00082.17 gi|330506703|ref|YP_004383131.1| - 1e-54 185.5 3.2 1.6e-54 184.9 2.2 1.3 1 0 0 1 1 1 1 Subtilase family PPC PF04151.10 gi|330506703|ref|YP_004383131.1| - 0.0036 18.2 0.8 0.0036 18.2 0.5 4.2 4 0 0 4 4 4 1 Bacterial pre-peptidase C-terminal domain DUF4625 PF15418.1 gi|330506703|ref|YP_004383131.1| - 0.022 14.8 0.0 0.059 13.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) Inhibitor_I9 PF05922.11 gi|330506703|ref|YP_004383131.1| - 0.03 14.8 0.0 0.067 13.7 0.0 1.6 1 0 0 1 1 1 0 Peptidase inhibitor I9 Radical_SAM PF04055.16 gi|330506704|ref|YP_004383132.1| - 8.6e-26 91.0 0.0 1.2e-25 90.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330506704|ref|YP_004383132.1| - 0.0037 17.3 0.0 0.0066 16.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330506704|ref|YP_004383132.1| - 0.0047 16.9 0.0 0.0097 15.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain HD PF01966.17 gi|330506705|ref|YP_004383133.1| - 1.7e-11 44.2 3.4 1.4e-10 41.2 0.6 2.1 2 0 0 2 2 2 1 HD domain DUF2332 PF10094.4 gi|330506705|ref|YP_004383133.1| - 0.056 12.4 0.1 0.082 11.8 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2332) HD_4 PF13328.1 gi|330506705|ref|YP_004383133.1| - 0.58 9.8 2.9 0.21 11.2 0.3 1.7 2 1 0 2 2 2 0 HD domain MacB_PCD PF12704.2 gi|330506706|ref|YP_004383134.1| - 9e-24 84.3 0.0 9e-24 84.3 0.0 2.1 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|330506706|ref|YP_004383134.1| - 8.7e-22 77.1 13.4 8.7e-22 77.1 9.3 2.1 2 0 0 2 2 2 1 FtsX-like permease family ABC2_membrane_3 PF12698.2 gi|330506706|ref|YP_004383134.1| - 0.19 10.7 14.2 0.096 11.7 8.2 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein MacB_PCD PF12704.2 gi|330506707|ref|YP_004383135.1| - 4.5e-28 98.4 0.6 7.4e-28 97.6 0.4 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|330506707|ref|YP_004383135.1| - 1.8e-24 85.8 11.2 1.8e-24 85.8 7.7 2.1 2 0 0 2 2 2 1 FtsX-like permease family UPF0489 PF12640.2 gi|330506708|ref|YP_004383136.1| - 3.4e-07 30.5 0.0 4.7e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 UPF0489 domain Sigma70_r1_2 PF00140.15 gi|330506709|ref|YP_004383137.1| - 2.3 7.9 4.7 0.99 9.1 0.3 2.3 3 0 0 3 3 3 0 Sigma-70 factor, region 1.2 DUF1646 PF07854.7 gi|330506710|ref|YP_004383138.1| - 1.6e-117 392.5 26.0 1.9e-117 392.2 18.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) CMD PF02627.15 gi|330506711|ref|YP_004383139.1| - 6.2e-13 48.3 0.4 7e-13 48.2 0.3 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family IF2_N PF04760.10 gi|330506711|ref|YP_004383139.1| - 0.033 13.8 0.9 0.43 10.2 0.1 2.6 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region GAGA PF09237.6 gi|330506711|ref|YP_004383139.1| - 0.081 12.5 1.2 0.38 10.3 0.1 2.1 2 0 0 2 2 2 0 GAGA factor ABC_tran PF00005.22 gi|330506712|ref|YP_004383140.1| - 3.9e-21 75.7 0.1 1.7e-08 34.8 0.0 5.0 4 1 0 4 4 4 3 ABC transporter SMC_N PF02463.14 gi|330506712|ref|YP_004383140.1| - 3.2e-10 39.6 0.0 0.077 12.2 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|330506712|ref|YP_004383140.1| - 1.3e-08 35.1 7.8 0.027 14.4 0.0 4.8 5 0 0 5 5 5 2 AAA domain AAA_29 PF13555.1 gi|330506712|ref|YP_004383140.1| - 2.7e-08 33.2 0.1 0.0049 16.3 0.0 2.7 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|330506712|ref|YP_004383140.1| - 6.7e-08 32.1 0.0 0.0061 15.9 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_23 PF13476.1 gi|330506712|ref|YP_004383140.1| - 4.3e-06 27.1 3.3 0.084 13.1 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|330506712|ref|YP_004383140.1| - 4.8e-06 26.4 0.0 0.17 11.7 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|330506712|ref|YP_004383140.1| - 1.4e-05 25.1 0.0 0.39 10.6 0.0 3.2 3 0 0 3 3 2 2 AAA ATPase domain AAA_18 PF13238.1 gi|330506712|ref|YP_004383140.1| - 1.6e-05 25.2 0.4 0.075 13.3 0.0 3.6 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.1 gi|330506712|ref|YP_004383140.1| - 2.1e-05 24.6 0.7 0.6 10.2 0.0 4.0 4 0 0 4 4 4 2 AAA domain AAA_15 PF13175.1 gi|330506712|ref|YP_004383140.1| - 3.7e-05 22.9 0.4 0.16 10.9 0.0 4.0 4 0 0 4 4 4 1 AAA ATPase domain AAA_19 PF13245.1 gi|330506712|ref|YP_004383140.1| - 4.4e-05 23.1 0.6 0.48 10.2 0.0 3.2 3 0 0 3 3 2 2 Part of AAA domain AAA_33 PF13671.1 gi|330506712|ref|YP_004383140.1| - 4.7e-05 23.2 0.0 0.55 10.1 0.0 3.0 3 0 0 3 3 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|330506712|ref|YP_004383140.1| - 5.1e-05 22.8 3.7 0.011 15.4 0.3 2.7 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter Viral_helicase1 PF01443.13 gi|330506712|ref|YP_004383140.1| - 6.5e-05 22.5 0.0 0.13 11.7 0.0 2.5 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase Arch_ATPase PF01637.13 gi|330506712|ref|YP_004383140.1| - 6.9e-05 22.6 1.6 0.18 11.4 0.0 3.5 5 0 0 5 5 4 2 Archaeal ATPase DUF258 PF03193.11 gi|330506712|ref|YP_004383140.1| - 6.9e-05 22.0 0.0 0.28 10.3 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 DnaJ_CXXCXGXG PF00684.14 gi|330506712|ref|YP_004383140.1| - 0.00016 21.6 6.4 0.015 15.3 0.3 3.7 3 1 0 3 3 3 1 DnaJ central domain KaiC PF06745.8 gi|330506712|ref|YP_004383140.1| - 0.0003 19.9 0.1 0.28 10.2 0.0 3.1 3 0 0 3 3 3 1 KaiC APS_kinase PF01583.15 gi|330506712|ref|YP_004383140.1| - 0.00035 20.2 1.1 0.78 9.3 0.0 3.2 4 0 0 4 4 2 2 Adenylylsulphate kinase AAA_17 PF13207.1 gi|330506712|ref|YP_004383140.1| - 0.00039 21.2 10.7 0.076 13.8 0.8 4.2 3 0 0 3 3 3 2 AAA domain AAA_10 PF12846.2 gi|330506712|ref|YP_004383140.1| - 0.00051 19.5 0.0 0.62 9.4 0.0 2.7 2 0 0 2 2 2 2 AAA-like domain DUF2075 PF09848.4 gi|330506712|ref|YP_004383140.1| - 0.00055 19.0 0.0 0.49 9.3 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|330506712|ref|YP_004383140.1| - 0.00079 19.1 0.8 7.4 6.2 0.0 3.8 3 0 0 3 3 3 0 NTPase cobW PF02492.14 gi|330506712|ref|YP_004383140.1| - 0.0023 17.3 0.4 0.67 9.3 0.1 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|330506712|ref|YP_004383140.1| - 0.0034 16.3 0.1 1.6 7.5 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein NACHT PF05729.7 gi|330506712|ref|YP_004383140.1| - 0.0034 17.0 0.0 1.9 8.0 0.0 2.8 3 0 0 3 3 3 1 NACHT domain MobB PF03205.9 gi|330506712|ref|YP_004383140.1| - 0.0055 16.4 0.3 2 8.1 0.0 2.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|330506712|ref|YP_004383140.1| - 0.0072 16.4 0.0 3.7 7.7 0.0 3.1 4 0 0 4 4 2 1 RNA helicase MMR_HSR1 PF01926.18 gi|330506712|ref|YP_004383140.1| - 0.013 15.4 0.2 6.7 6.7 0.0 3.9 4 0 0 4 4 4 0 50S ribosome-binding GTPase DAP3 PF10236.4 gi|330506712|ref|YP_004383140.1| - 0.016 14.1 1.3 5.2 5.9 0.0 3.1 3 0 0 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 Miro PF08477.8 gi|330506712|ref|YP_004383140.1| - 0.024 15.1 0.2 12 6.4 0.0 3.6 4 0 0 4 4 3 0 Miro-like protein AAA_28 PF13521.1 gi|330506712|ref|YP_004383140.1| - 0.03 14.2 0.1 3.8 7.4 0.0 2.8 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|330506712|ref|YP_004383140.1| - 0.038 12.7 0.0 8.3 5.1 0.0 2.5 2 0 0 2 2 2 0 ArgK protein AAA_30 PF13604.1 gi|330506712|ref|YP_004383140.1| - 0.045 13.3 0.1 8.8 5.8 0.0 3.0 3 0 0 3 3 2 0 AAA domain PRK PF00485.13 gi|330506712|ref|YP_004383140.1| - 0.046 13.2 0.1 7.9 5.9 0.0 2.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Lar_restr_allev PF14354.1 gi|330506712|ref|YP_004383140.1| - 0.92 9.8 6.6 18 5.7 0.1 3.5 3 0 0 3 3 3 0 Restriction alleviation protein Lar Peripla_BP_2 PF01497.13 gi|330506714|ref|YP_004383142.1| - 1.8e-33 115.6 0.0 3.6e-33 114.6 0.0 1.6 1 1 0 1 1 1 1 Periplasmic binding protein Methyltransf_31 PF13847.1 gi|330506715|ref|YP_004383143.1| - 3.5e-12 46.1 0.0 4.3e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330506715|ref|YP_004383143.1| - 3.6e-11 43.6 0.0 5.2e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330506715|ref|YP_004383143.1| - 4.4e-08 33.4 0.0 8e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330506715|ref|YP_004383143.1| - 2.1e-07 31.2 0.0 4.1e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330506715|ref|YP_004383143.1| - 9.6e-07 28.3 0.1 1.5e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|330506715|ref|YP_004383143.1| - 1.1e-06 29.0 0.0 3.8e-06 27.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|330506715|ref|YP_004383143.1| - 7.4e-06 25.1 0.0 1.2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|330506715|ref|YP_004383143.1| - 2.6e-05 23.4 0.0 3.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.8 gi|330506715|ref|YP_004383143.1| - 6.2e-05 22.2 0.1 9.2e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|330506715|ref|YP_004383143.1| - 8.2e-05 22.0 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|330506715|ref|YP_004383143.1| - 0.00018 21.2 0.0 0.0003 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|330506715|ref|YP_004383143.1| - 0.00028 20.1 0.0 0.00038 19.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_16 PF10294.4 gi|330506715|ref|YP_004383143.1| - 0.00032 20.1 0.0 0.00049 19.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|330506715|ref|YP_004383143.1| - 0.0006 18.6 0.0 0.00088 18.0 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_15 PF09445.5 gi|330506715|ref|YP_004383143.1| - 0.00074 19.1 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase GidB PF02527.10 gi|330506715|ref|YP_004383143.1| - 0.00089 18.4 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PCMT PF01135.14 gi|330506715|ref|YP_004383143.1| - 0.0012 18.4 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.11 gi|330506715|ref|YP_004383143.1| - 0.0013 18.3 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein CMAS PF02353.15 gi|330506715|ref|YP_004383143.1| - 0.0029 16.7 0.0 0.0044 16.1 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|330506715|ref|YP_004383143.1| - 0.011 15.7 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|330506715|ref|YP_004383143.1| - 0.049 12.6 0.0 0.077 12.0 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase FmrO PF07091.6 gi|330506715|ref|YP_004383143.1| - 0.099 11.6 0.1 0.18 10.7 0.0 1.4 2 0 0 2 2 2 0 Ribosomal RNA methyltransferase (FmrO) DREV PF05219.7 gi|330506715|ref|YP_004383143.1| - 0.15 10.9 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Band_7 PF01145.20 gi|330506716|ref|YP_004383144.1| - 5.5e-35 120.8 1.1 6.9e-35 120.5 0.8 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|330506716|ref|YP_004383144.1| - 0.0087 15.5 0.1 0.024 14.1 0.0 1.8 2 0 0 2 2 2 1 SPFH domain-Band 7 family Maelstrom PF13017.1 gi|330506716|ref|YP_004383144.1| - 0.15 11.5 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 piRNA pathway germ-plasm component FecCD PF01032.13 gi|330506717|ref|YP_004383145.1| - 1.5e-88 296.6 33.4 1.8e-88 296.3 23.2 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|330506717|ref|YP_004383145.1| - 0.0052 16.1 23.7 0.0079 15.5 16.4 1.3 1 0 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.22 gi|330506718|ref|YP_004383146.1| - 6e-34 117.2 0.0 8.7e-34 116.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330506718|ref|YP_004383146.1| - 2.4e-09 37.6 0.0 1.1e-05 25.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330506718|ref|YP_004383146.1| - 4e-07 29.4 0.7 5.6e-05 22.4 0.5 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|330506718|ref|YP_004383146.1| - 5.2e-07 29.0 0.2 0.0027 16.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|330506718|ref|YP_004383146.1| - 5.7e-07 30.0 0.0 1.1e-06 29.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|330506718|ref|YP_004383146.1| - 1.2e-06 27.9 0.0 2.4e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|330506718|ref|YP_004383146.1| - 1.3e-05 24.8 0.0 1.5e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain ABC_ATPase PF09818.4 gi|330506718|ref|YP_004383146.1| - 7.3e-05 21.5 1.0 0.23 9.9 0.0 2.8 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|330506718|ref|YP_004383146.1| - 0.00024 21.1 0.0 0.00051 20.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RNA12 PF10443.4 gi|330506718|ref|YP_004383146.1| - 0.0011 17.5 0.2 0.0024 16.4 0.0 1.6 2 0 0 2 2 2 1 RNA12 protein AAA_22 PF13401.1 gi|330506718|ref|YP_004383146.1| - 0.0013 18.8 1.1 0.13 12.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|330506718|ref|YP_004383146.1| - 0.002 17.8 0.1 0.0042 16.8 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|330506718|ref|YP_004383146.1| - 0.002 17.8 0.0 0.0047 16.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Mg_chelatase PF01078.16 gi|330506718|ref|YP_004383146.1| - 0.0029 16.7 0.0 0.0082 15.3 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|330506718|ref|YP_004383146.1| - 0.0036 16.4 0.0 0.0055 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|330506718|ref|YP_004383146.1| - 0.0046 16.8 0.0 0.0068 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|330506718|ref|YP_004383146.1| - 0.006 15.1 0.1 0.16 10.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|330506718|ref|YP_004383146.1| - 0.0084 15.2 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin MutS_V PF00488.16 gi|330506718|ref|YP_004383146.1| - 0.011 15.1 0.1 0.036 13.4 0.0 2.0 2 1 0 2 2 2 0 MutS domain V ArgK PF03308.11 gi|330506718|ref|YP_004383146.1| - 0.02 13.6 0.2 0.078 11.7 0.1 1.8 1 1 0 1 1 1 0 ArgK protein Rad17 PF03215.10 gi|330506718|ref|YP_004383146.1| - 0.026 13.2 0.0 0.042 12.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|330506718|ref|YP_004383146.1| - 0.029 13.9 0.0 0.067 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|330506718|ref|YP_004383146.1| - 0.034 13.5 0.0 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|330506718|ref|YP_004383146.1| - 0.047 14.5 0.9 0.086 13.6 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|330506718|ref|YP_004383146.1| - 0.055 13.3 0.1 0.25 11.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|330506718|ref|YP_004383146.1| - 0.064 12.9 0.2 0.15 11.7 0.1 1.6 2 0 0 2 2 2 0 NACHT domain DUF815 PF05673.8 gi|330506718|ref|YP_004383146.1| - 0.066 12.1 0.0 0.18 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_5 PF07728.9 gi|330506718|ref|YP_004383146.1| - 0.072 12.8 0.1 1.7 8.3 0.0 2.5 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|330506718|ref|YP_004383146.1| - 0.09 11.6 0.8 0.17 10.6 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain Arch_ATPase PF01637.13 gi|330506718|ref|YP_004383146.1| - 0.11 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|330506718|ref|YP_004383146.1| - 0.11 11.9 0.0 0.29 10.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|330506718|ref|YP_004383146.1| - 0.12 12.2 0.1 1.2 9.0 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Adeno_IVa2 PF02456.10 gi|330506718|ref|YP_004383146.1| - 0.12 10.9 0.0 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein MMR_HSR1 PF01926.18 gi|330506718|ref|YP_004383146.1| - 0.13 12.2 0.1 0.22 11.4 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|330506718|ref|YP_004383146.1| - 0.13 12.4 0.1 0.43 10.7 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Flavin_Reduct PF01613.13 gi|330506719|ref|YP_004383147.1| - 1.5e-20 73.5 0.0 2e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|330506719|ref|YP_004383147.1| - 0.00016 21.2 0.0 0.00029 20.4 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF447) CbiA PF01656.18 gi|330506720|ref|YP_004383148.1| - 2e-22 79.5 0.1 2.9e-22 79.0 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|330506720|ref|YP_004383148.1| - 3.4e-09 36.8 0.0 8.5e-07 29.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|330506720|ref|YP_004383148.1| - 1.5e-07 30.7 1.5 2.2e-07 30.2 0.1 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase APS_kinase PF01583.15 gi|330506720|ref|YP_004383148.1| - 3.1e-07 30.1 0.0 6.7e-07 29.1 0.0 1.5 1 1 0 1 1 1 1 Adenylylsulphate kinase MipZ PF09140.6 gi|330506720|ref|YP_004383148.1| - 6.8e-07 28.6 0.0 0.0008 18.5 0.0 2.1 2 0 0 2 2 2 2 ATPase MipZ AAA_17 PF13207.1 gi|330506720|ref|YP_004383148.1| - 1.1e-06 29.4 0.1 2.4e-06 28.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|330506720|ref|YP_004383148.1| - 2.2e-06 27.0 3.4 0.0001 21.6 2.4 2.2 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MobB PF03205.9 gi|330506720|ref|YP_004383148.1| - 1.6e-05 24.6 0.3 0.00059 19.5 0.0 2.7 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|330506720|ref|YP_004383148.1| - 3.4e-05 23.4 0.0 6.3e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain KTI12 PF08433.5 gi|330506720|ref|YP_004383148.1| - 3.5e-05 23.1 0.0 5.9e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 SRP54 PF00448.17 gi|330506720|ref|YP_004383148.1| - 4.9e-05 22.8 0.0 0.00026 20.4 0.0 2.1 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain TrkA_N PF02254.13 gi|330506720|ref|YP_004383148.1| - 9.7e-05 22.3 0.2 0.026 14.4 0.0 2.5 2 1 0 2 2 2 1 TrkA-N domain DUF87 PF01935.12 gi|330506720|ref|YP_004383148.1| - 0.0001 22.2 0.1 0.00026 20.9 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|330506720|ref|YP_004383148.1| - 0.00015 22.1 0.6 0.00049 20.4 0.4 2.0 1 1 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|330506720|ref|YP_004383148.1| - 0.00024 20.5 0.1 0.013 14.9 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain ABC_tran PF00005.22 gi|330506720|ref|YP_004383148.1| - 0.0012 19.1 0.1 0.0023 18.2 0.1 1.5 1 1 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.7 gi|330506720|ref|YP_004383148.1| - 0.0012 17.9 0.0 0.0033 16.5 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_25 PF13481.1 gi|330506720|ref|YP_004383148.1| - 0.0014 18.1 0.0 0.0047 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|330506720|ref|YP_004383148.1| - 0.0016 18.6 0.0 0.0078 16.3 0.0 2.1 2 1 0 2 2 2 1 RNA helicase T2SE PF00437.15 gi|330506720|ref|YP_004383148.1| - 0.0033 16.3 0.1 0.0056 15.6 0.1 1.5 1 1 0 1 1 1 1 Type II/IV secretion system protein KaiC PF06745.8 gi|330506720|ref|YP_004383148.1| - 0.0057 15.8 0.2 0.011 14.9 0.1 1.6 1 1 0 1 1 1 1 KaiC YhjQ PF06564.7 gi|330506720|ref|YP_004383148.1| - 0.0071 15.7 0.0 0.13 11.6 0.0 2.0 2 0 0 2 2 2 1 YhjQ protein TrwB_AAD_bind PF10412.4 gi|330506720|ref|YP_004383148.1| - 0.0087 14.7 0.0 0.015 13.9 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Miro PF08477.8 gi|330506720|ref|YP_004383148.1| - 0.0099 16.3 0.1 0.049 14.1 0.1 2.1 2 0 0 2 2 2 1 Miro-like protein AAA_33 PF13671.1 gi|330506720|ref|YP_004383148.1| - 0.01 15.7 0.0 0.031 14.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain KAP_NTPase PF07693.9 gi|330506720|ref|YP_004383148.1| - 0.012 14.5 0.1 0.014 14.3 0.1 1.4 1 1 0 1 1 1 0 KAP family P-loop domain FR47 PF08445.5 gi|330506720|ref|YP_004383148.1| - 0.014 15.0 0.0 0.049 13.3 0.0 1.9 2 0 0 2 2 1 0 FR47-like protein FtsK_SpoIIIE PF01580.13 gi|330506720|ref|YP_004383148.1| - 0.021 14.2 0.3 0.061 12.8 0.1 1.7 1 1 0 1 1 1 0 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|330506720|ref|YP_004383148.1| - 0.023 14.6 0.1 0.035 14.0 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain ArgK PF03308.11 gi|330506720|ref|YP_004383148.1| - 0.023 13.4 0.2 0.051 12.3 0.0 1.6 2 0 0 2 2 2 0 ArgK protein Thymidylate_kin PF02223.12 gi|330506720|ref|YP_004383148.1| - 0.037 13.4 0.0 0.19 11.0 0.0 2.2 3 0 0 3 3 3 0 Thymidylate kinase IstB_IS21 PF01695.12 gi|330506720|ref|YP_004383148.1| - 0.065 12.6 0.1 0.18 11.1 0.0 1.7 1 1 1 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|330506720|ref|YP_004383148.1| - 0.099 12.5 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|330506720|ref|YP_004383148.1| - 0.12 12.5 0.1 0.3 11.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|330506720|ref|YP_004383148.1| - 0.14 12.1 0.5 1.7 8.6 0.3 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase SBP_bac_5 PF00496.17 gi|330506721|ref|YP_004383149.1| - 2e-78 263.8 2.4 3e-78 263.2 1.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Phosphonate-bd PF12974.2 gi|330506721|ref|YP_004383149.1| - 0.017 14.4 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein dTDP_sugar_isom PF00908.12 gi|330506722|ref|YP_004383150.1| - 9.7e-15 54.3 0.0 1.2e-14 54.0 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|330506722|ref|YP_004383150.1| - 4.2e-12 45.6 0.0 5.8e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.6 gi|330506722|ref|YP_004383150.1| - 0.0017 17.7 0.1 0.52 9.8 0.0 2.2 2 0 0 2 2 2 2 Cupin domain E1-E2_ATPase PF00122.15 gi|330506723|ref|YP_004383151.1| - 2.5e-50 170.6 2.2 2.5e-50 170.6 1.5 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|330506723|ref|YP_004383151.1| - 3.9e-40 138.5 0.1 6.8e-40 137.7 0.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|330506723|ref|YP_004383151.1| - 1.1e-14 55.0 0.0 2.4e-14 53.9 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|330506723|ref|YP_004383151.1| - 0.00025 20.7 0.1 0.14 11.7 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Resolvase PF00239.16 gi|330506723|ref|YP_004383151.1| - 0.16 11.8 0.4 29 4.5 0.0 3.4 2 1 0 2 2 2 0 Resolvase, N terminal domain FmdE PF02663.9 gi|330506724|ref|YP_004383152.1| - 2.4e-32 111.5 0.0 1.1e-23 83.6 0.0 2.4 2 1 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ABC_tran PF00005.22 gi|330506725|ref|YP_004383153.1| - 1.4e-28 99.8 0.0 2.3e-28 99.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330506725|ref|YP_004383153.1| - 2.5e-15 57.2 0.0 9.1e-13 48.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|330506725|ref|YP_004383153.1| - 2.4e-05 24.7 0.0 4.4e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|330506725|ref|YP_004383153.1| - 0.00015 20.9 0.0 0.016 14.3 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|330506725|ref|YP_004383153.1| - 0.00067 20.0 0.1 0.0017 18.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|330506725|ref|YP_004383153.1| - 0.00099 18.5 0.0 0.002 17.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|330506725|ref|YP_004383153.1| - 0.0072 15.8 0.1 0.037 13.4 0.1 1.8 1 1 1 2 2 2 1 AAA-like domain MobB PF03205.9 gi|330506725|ref|YP_004383153.1| - 0.0088 15.7 0.0 0.034 13.8 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|330506725|ref|YP_004383153.1| - 0.014 15.5 0.0 0.03 14.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|330506725|ref|YP_004383153.1| - 0.016 13.7 0.0 0.024 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|330506725|ref|YP_004383153.1| - 0.026 14.5 0.0 0.058 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|330506725|ref|YP_004383153.1| - 0.028 13.8 0.0 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|330506725|ref|YP_004383153.1| - 0.029 14.5 0.0 0.14 12.3 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRPRB PF09439.5 gi|330506725|ref|YP_004383153.1| - 0.031 13.4 0.0 0.28 10.3 0.0 2.1 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit RNA_helicase PF00910.17 gi|330506725|ref|YP_004383153.1| - 0.036 14.2 0.0 0.074 13.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|330506725|ref|YP_004383153.1| - 0.036 13.7 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|330506725|ref|YP_004383153.1| - 0.097 12.6 0.1 0.21 11.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|330506725|ref|YP_004383153.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|330506725|ref|YP_004383153.1| - 0.12 13.1 0.0 0.3 11.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain DUF258 PF03193.11 gi|330506725|ref|YP_004383153.1| - 0.14 11.2 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TrwB_AAD_bind PF10412.4 gi|330506725|ref|YP_004383153.1| - 0.16 10.5 0.0 0.23 10.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SMC_N PF02463.14 gi|330506725|ref|YP_004383153.1| - 0.17 11.1 0.0 0.59 9.3 0.0 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane PF01061.19 gi|330506726|ref|YP_004383154.1| - 1.1e-15 57.3 0.9 1.4e-15 57.0 0.7 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330506726|ref|YP_004383154.1| - 2.6e-05 23.4 0.3 3.5e-05 23.0 0.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|330506727|ref|YP_004383155.1| - 5.1e-16 58.4 8.8 5.1e-16 58.4 6.1 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330506727|ref|YP_004383155.1| - 2.6e-07 30.0 17.8 3e-07 29.8 12.4 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|330506727|ref|YP_004383155.1| - 0.036 12.9 11.9 0.049 12.4 8.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein ApbA_C PF08546.6 gi|330506728|ref|YP_004383156.1| - 9.4e-35 119.3 0.1 1.6e-34 118.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|330506728|ref|YP_004383156.1| - 4.5e-22 78.1 0.0 8e-22 77.3 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|330506728|ref|YP_004383156.1| - 0.026 15.0 0.0 0.12 12.9 0.0 2.0 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold EamA PF00892.15 gi|330506729|ref|YP_004383157.1| - 2.7e-09 37.1 35.4 2.2e-07 30.9 7.2 3.0 3 0 0 3 3 3 2 EamA-like transporter family Acylphosphatase PF00708.13 gi|330506730|ref|YP_004383158.1| - 1.9e-06 27.8 0.0 2.1e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Acylphosphatase OrfB_Zn_ribbon PF07282.6 gi|330506731|ref|YP_004383159.1| - 7.3e-23 80.0 0.0 2.2e-22 78.4 0.0 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330506731|ref|YP_004383159.1| - 2.9e-11 43.2 2.2 4.1e-11 42.7 1.6 1.2 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|330506731|ref|YP_004383159.1| - 0.052 13.2 0.1 0.12 12.0 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1610 PF07754.6 gi|330506731|ref|YP_004383159.1| - 0.11 12.6 5.4 1 9.5 3.8 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) zf-C3HC4_3 PF13920.1 gi|330506731|ref|YP_004383159.1| - 0.21 11.2 2.6 0.43 10.2 1.8 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Rubrerythrin PF02915.12 gi|330506732|ref|YP_004383160.1| - 7.1e-07 29.6 0.7 8.3e-07 29.4 0.5 1.1 1 0 0 1 1 1 1 Rubrerythrin Mn_catalase PF05067.7 gi|330506732|ref|YP_004383160.1| - 1.4e-05 23.9 0.1 1.6e-05 23.7 0.0 1.0 1 0 0 1 1 1 1 Manganese containing catalase DUF2383 PF09537.5 gi|330506732|ref|YP_004383160.1| - 0.0014 18.8 0.2 0.0017 18.5 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) COQ7 PF03232.8 gi|330506732|ref|YP_004383160.1| - 0.0043 16.5 0.2 0.0056 16.1 0.1 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Ferritin PF00210.19 gi|330506732|ref|YP_004383160.1| - 0.012 15.3 0.1 0.016 14.9 0.1 1.2 1 0 0 1 1 1 0 Ferritin-like domain Ferritin_2 PF13668.1 gi|330506732|ref|YP_004383160.1| - 0.076 12.9 0.1 0.1 12.5 0.1 1.2 1 0 0 1 1 1 0 Ferritin-like domain DUF4430 PF14478.1 gi|330506733|ref|YP_004383161.1| - 0.023 14.7 0.1 0.048 13.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4430) SDH_sah PF01972.11 gi|330506735|ref|YP_004383163.1| - 9.2e-107 356.0 0.8 1e-106 355.8 0.5 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|330506735|ref|YP_004383163.1| - 8.1e-07 28.8 0.9 1.8e-06 27.7 0.6 1.7 1 1 0 1 1 1 1 Clp protease Peptidase_S49 PF01343.13 gi|330506735|ref|YP_004383163.1| - 0.0034 17.1 0.0 0.013 15.3 0.0 1.9 2 0 0 2 2 2 1 Peptidase family S49 ECH PF00378.15 gi|330506735|ref|YP_004383163.1| - 0.013 14.6 0.4 0.047 12.8 0.3 1.9 1 1 0 1 1 1 0 Enoyl-CoA hydratase/isomerase family Gp-FAR-1 PF05823.7 gi|330506735|ref|YP_004383163.1| - 0.039 13.9 0.1 0.06 13.2 0.1 1.2 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Pyridox_oxidase PF01243.15 gi|330506736|ref|YP_004383164.1| - 7.3e-15 54.7 0.0 8.9e-15 54.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.2 gi|330506736|ref|YP_004383164.1| - 0.031 14.5 0.0 0.049 13.9 0.0 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DUF4430 PF14478.1 gi|330506736|ref|YP_004383164.1| - 0.082 12.9 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4430) GATase_3 PF07685.9 gi|330506737|ref|YP_004383165.1| - 5.6e-33 113.7 0.2 9.6e-33 113.0 0.2 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|330506737|ref|YP_004383165.1| - 1.5e-21 76.6 0.0 2.7e-21 75.8 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|330506737|ref|YP_004383165.1| - 1e-15 57.8 0.2 1.3e-10 41.2 0.0 2.3 1 1 0 2 2 2 2 AAA domain SNO PF01174.14 gi|330506737|ref|YP_004383165.1| - 0.0007 19.2 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family DUF4066 PF13278.1 gi|330506737|ref|YP_004383165.1| - 0.026 13.8 0.0 0.047 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase Peptidase_S51 PF03575.12 gi|330506737|ref|YP_004383165.1| - 0.058 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S51 AAA_29 PF13555.1 gi|330506737|ref|YP_004383165.1| - 0.086 12.3 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Fer4_NifH PF00142.13 gi|330506738|ref|YP_004383166.1| - 3e-89 298.8 0.1 3.4e-89 298.6 0.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|330506738|ref|YP_004383166.1| - 1.7e-11 43.8 0.0 2.2e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|330506738|ref|YP_004383166.1| - 2.9e-07 29.8 0.3 5e-07 29.0 0.2 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|330506738|ref|YP_004383166.1| - 4.7e-05 23.3 0.0 0.00011 22.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330506738|ref|YP_004383166.1| - 0.00017 21.6 0.1 0.057 13.3 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|330506738|ref|YP_004383166.1| - 0.00051 19.5 0.0 0.00074 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain ArgK PF03308.11 gi|330506738|ref|YP_004383166.1| - 0.00072 18.4 0.1 0.0011 17.7 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_22 PF13401.1 gi|330506738|ref|YP_004383166.1| - 0.0011 19.1 0.1 0.06 13.4 0.0 2.5 2 1 1 3 3 3 1 AAA domain MipZ PF09140.6 gi|330506738|ref|YP_004383166.1| - 0.0017 17.4 0.2 0.012 14.7 0.0 2.0 2 0 0 2 2 2 1 ATPase MipZ AAA_25 PF13481.1 gi|330506738|ref|YP_004383166.1| - 0.0029 17.0 0.1 0.0093 15.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|330506738|ref|YP_004383166.1| - 0.0077 15.6 0.1 0.016 14.6 0.0 1.5 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|330506738|ref|YP_004383166.1| - 0.011 15.3 0.1 3.4 7.1 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CPSase_L_chain PF00289.17 gi|330506738|ref|YP_004383166.1| - 0.011 15.8 0.0 0.036 14.1 0.0 1.9 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain DUF87 PF01935.12 gi|330506738|ref|YP_004383166.1| - 0.014 15.2 0.1 0.033 13.9 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|330506738|ref|YP_004383166.1| - 0.018 14.5 0.2 0.035 13.5 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family NB-ARC PF00931.17 gi|330506738|ref|YP_004383166.1| - 0.032 13.0 0.1 0.046 12.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.12 gi|330506738|ref|YP_004383166.1| - 0.06 12.7 0.2 0.089 12.1 0.1 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|330506738|ref|YP_004383166.1| - 0.076 12.7 0.0 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain RNA_helicase PF00910.17 gi|330506738|ref|YP_004383166.1| - 0.16 12.1 0.0 0.54 10.4 0.0 1.9 3 0 0 3 3 2 0 RNA helicase S-layer PF07752.6 gi|330506739|ref|YP_004383167.1| - 6.2e-76 255.0 8.0 1.5e-40 139.0 1.3 2.4 2 0 0 2 2 2 2 S-layer protein IGPD PF00475.13 gi|330506740|ref|YP_004383168.1| - 7.1e-29 100.5 0.0 9e-29 100.1 0.0 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Ribosomal_S9 PF00380.14 gi|330506740|ref|YP_004383168.1| - 0.0041 17.3 0.4 0.45 10.7 0.2 2.6 1 1 0 1 1 1 1 Ribosomal protein S9/S16 Acetyltransf_3 PF13302.1 gi|330506741|ref|YP_004383169.1| - 6.7e-29 100.8 0.1 7.9e-29 100.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|330506741|ref|YP_004383169.1| - 6.8e-17 61.8 0.0 7.8e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|330506741|ref|YP_004383169.1| - 6e-10 39.0 0.5 9.1e-10 38.4 0.4 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|330506741|ref|YP_004383169.1| - 5e-09 36.1 0.1 1.9e-08 34.3 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain SnoaL_2 PF12680.2 gi|330506741|ref|YP_004383169.1| - 0.019 15.3 0.0 0.034 14.5 0.0 1.5 1 1 0 1 1 1 0 SnoaL-like domain DUF3667 PF12412.3 gi|330506741|ref|YP_004383169.1| - 0.077 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3667) Acetyltransf_4 PF13420.1 gi|330506742|ref|YP_004383170.1| - 5.5e-13 49.1 0.0 6.2e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|330506742|ref|YP_004383170.1| - 6.5e-11 42.1 0.0 1.2e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|330506742|ref|YP_004383170.1| - 7.5e-08 32.6 0.0 8.7e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|330506742|ref|YP_004383170.1| - 3.1e-07 30.5 0.0 4.3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|330506742|ref|YP_004383170.1| - 2.6e-06 27.5 0.0 4.4e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|330506742|ref|YP_004383170.1| - 2.7e-05 23.8 0.0 3.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|330506742|ref|YP_004383170.1| - 0.00064 19.6 0.0 0.00073 19.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|330506742|ref|YP_004383170.1| - 0.0024 17.7 0.0 0.0048 16.7 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|330506742|ref|YP_004383170.1| - 0.023 14.5 0.0 0.043 13.6 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|330506742|ref|YP_004383170.1| - 0.091 12.5 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_1 PF00583.19 gi|330506743|ref|YP_004383171.1| - 2.2e-14 53.2 0.0 3.3e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|330506743|ref|YP_004383171.1| - 1.9e-10 40.8 0.0 2.3e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|330506743|ref|YP_004383171.1| - 2.8e-10 40.2 0.0 4.3e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|330506743|ref|YP_004383171.1| - 1.6e-06 27.9 0.0 1.1e-05 25.2 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|330506743|ref|YP_004383171.1| - 1.2e-05 24.9 0.0 2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|330506743|ref|YP_004383171.1| - 6.2e-05 22.9 0.0 7.6e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|330506743|ref|YP_004383171.1| - 0.00038 20.6 0.0 0.00046 20.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.1 gi|330506743|ref|YP_004383171.1| - 0.036 14.6 0.0 0.076 13.5 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|330506743|ref|YP_004383171.1| - 0.036 13.3 0.0 0.06 12.6 0.0 1.3 1 1 0 1 1 1 0 GNAT acetyltransferase 2 DUF3749 PF12568.3 gi|330506743|ref|YP_004383171.1| - 0.047 13.2 0.0 0.058 12.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|330506743|ref|YP_004383171.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PEMT PF04191.8 gi|330506744|ref|YP_004383172.1| - 8.2e-10 38.7 1.3 8.2e-10 38.7 0.9 2.1 1 1 1 2 2 2 1 Phospholipid methyltransferase DUF1295 PF06966.7 gi|330506744|ref|YP_004383172.1| - 5.1e-05 22.6 1.3 7.5e-05 22.1 0.9 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) ICMT PF04140.9 gi|330506744|ref|YP_004383172.1| - 0.0022 18.1 1.8 0.0075 16.4 1.3 1.9 1 1 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.12 gi|330506744|ref|YP_004383172.1| - 0.047 12.2 1.2 0.059 11.9 0.3 1.4 1 1 0 1 1 1 0 Ergosterol biosynthesis ERG4/ERG24 family DUF656 PF04920.7 gi|330506744|ref|YP_004383172.1| - 0.11 12.2 0.2 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF656) DUF4389 PF14333.1 gi|330506744|ref|YP_004383172.1| - 0.4 10.4 0.1 0.4 10.4 0.1 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4389) Herpes_LMP1 PF05297.6 gi|330506744|ref|YP_004383172.1| - 8.1 5.2 6.8 17 4.2 4.7 1.4 1 1 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF4066 PF13278.1 gi|330506745|ref|YP_004383173.1| - 7.9e-09 34.9 0.0 8.9e-09 34.8 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|330506745|ref|YP_004383173.1| - 1.3e-08 34.4 0.0 1.6e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family Multi_Drug_Res PF00893.14 gi|330506746|ref|YP_004383174.1| - 1.7e-27 95.6 8.6 2.4e-27 95.2 6.0 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|330506746|ref|YP_004383174.1| - 0.00019 21.6 9.1 0.00025 21.1 6.3 1.2 1 0 0 1 1 1 1 Multidrug resistance efflux transporter UPF0060 PF02694.10 gi|330506746|ref|YP_004383174.1| - 0.023 14.6 6.9 0.03 14.3 4.8 1.2 1 0 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family EamA PF00892.15 gi|330506746|ref|YP_004383174.1| - 0.096 12.7 15.2 0.26 11.3 10.5 1.8 1 1 0 1 1 1 0 EamA-like transporter family DUF4064 PF13273.1 gi|330506746|ref|YP_004383174.1| - 3.2 7.9 10.8 6.5 6.9 7.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) Methyltransf_23 PF13489.1 gi|330506747|ref|YP_004383175.1| - 2.1e-18 66.5 0.0 2.8e-18 66.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330506747|ref|YP_004383175.1| - 1.5e-16 60.3 0.1 1.8e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330506747|ref|YP_004383175.1| - 5.8e-15 55.5 0.1 1.2e-14 54.5 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330506747|ref|YP_004383175.1| - 7.7e-15 55.1 0.0 1.4e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330506747|ref|YP_004383175.1| - 3.9e-13 49.9 0.0 6.5e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330506747|ref|YP_004383175.1| - 7.4e-11 42.3 0.0 1.2e-10 41.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330506747|ref|YP_004383175.1| - 2.8e-09 36.6 0.0 4e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|330506747|ref|YP_004383175.1| - 3.6e-08 32.8 0.1 5e-08 32.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|330506747|ref|YP_004383175.1| - 4.7e-08 32.4 0.0 5.6e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.14 gi|330506747|ref|YP_004383175.1| - 2.6e-07 30.3 0.0 3.6e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|330506747|ref|YP_004383175.1| - 3.1e-05 23.1 0.1 4.5e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|330506747|ref|YP_004383175.1| - 6.9e-05 21.9 0.0 9e-05 21.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|330506747|ref|YP_004383175.1| - 0.00018 21.4 0.0 0.00033 20.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|330506747|ref|YP_004383175.1| - 0.0011 18.3 0.0 0.0014 18.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|330506747|ref|YP_004383175.1| - 0.0018 17.3 0.0 0.0026 16.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|330506747|ref|YP_004383175.1| - 0.007 16.0 0.0 0.0099 15.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|330506747|ref|YP_004383175.1| - 0.013 14.1 0.0 0.024 13.3 0.0 1.4 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DREV PF05219.7 gi|330506747|ref|YP_004383175.1| - 0.022 13.6 0.1 0.037 12.9 0.0 1.4 2 0 0 2 2 2 0 DREV methyltransferase Fibrillarin PF01269.12 gi|330506747|ref|YP_004383175.1| - 0.027 13.3 0.0 0.034 13.0 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin FmrO PF07091.6 gi|330506747|ref|YP_004383175.1| - 0.078 11.9 0.1 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_8 PF05148.10 gi|330506747|ref|YP_004383175.1| - 0.08 12.5 0.1 0.23 11.0 0.0 1.8 2 0 0 2 2 2 0 Hypothetical methyltransferase Methyltransf_PK PF05891.7 gi|330506747|ref|YP_004383175.1| - 0.095 11.9 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Abhydrolase_6 PF12697.2 gi|330506748|ref|YP_004383176.1| - 1.3e-24 87.3 0.0 1.6e-24 87.0 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|330506748|ref|YP_004383176.1| - 8.8e-16 58.1 0.1 2.9e-10 40.0 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|330506748|ref|YP_004383176.1| - 1.2e-14 54.2 0.0 2.4e-14 53.3 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|330506748|ref|YP_004383176.1| - 2.3e-05 24.7 0.0 2.9e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain PGAP1 PF07819.8 gi|330506748|ref|YP_004383176.1| - 5.1e-05 22.9 0.0 6.6e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 PGAP1-like protein Hydrolase_4 PF12146.3 gi|330506748|ref|YP_004383176.1| - 8e-05 22.4 0.0 0.00014 21.6 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase FSH1 PF03959.8 gi|330506748|ref|YP_004383176.1| - 0.01 15.3 0.0 0.038 13.4 0.0 1.8 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.11 gi|330506748|ref|YP_004383176.1| - 0.039 13.3 0.0 0.26 10.6 0.0 2.2 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase DUF1100 PF06500.6 gi|330506748|ref|YP_004383176.1| - 0.073 11.6 0.0 0.085 11.4 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1100) DUF915 PF06028.6 gi|330506748|ref|YP_004383176.1| - 0.089 11.8 0.0 0.33 10.0 0.0 1.7 1 1 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) EHN PF06441.7 gi|330506748|ref|YP_004383176.1| - 0.13 12.2 0.0 0.32 10.9 0.0 1.7 1 0 0 1 1 1 0 Epoxide hydrolase N terminus Peptidase_M28 PF04389.12 gi|330506749|ref|YP_004383177.1| - 8e-19 68.0 0.0 1.3e-18 67.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 adh_short PF00106.20 gi|330506750|ref|YP_004383178.1| - 1.3e-32 113.0 0.1 1.7e-32 112.6 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|330506750|ref|YP_004383178.1| - 6.6e-20 71.9 0.0 7.9e-20 71.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|330506750|ref|YP_004383178.1| - 4.6e-15 55.7 0.0 8.5e-15 54.8 0.0 1.3 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|330506750|ref|YP_004383178.1| - 0.00054 20.0 0.6 0.0026 17.7 0.1 2.0 2 0 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|330506750|ref|YP_004383178.1| - 0.0011 18.4 0.0 0.0016 17.9 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family ApbA PF02558.11 gi|330506750|ref|YP_004383178.1| - 0.0068 15.8 0.0 0.48 9.8 0.0 2.2 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3Beta_HSD PF01073.14 gi|330506750|ref|YP_004383178.1| - 0.14 10.8 0.0 0.19 10.4 0.0 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family OrfB_Zn_ribbon PF07282.6 gi|330506751|ref|YP_004383179.1| - 0.024 14.2 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Phage_Gp14 PF10666.4 gi|330506753|ref|YP_004383181.1| - 0.0076 16.1 0.1 0.009 15.8 0.1 1.0 1 0 0 1 1 1 1 Phage protein Gp14 DUF1771 PF08590.5 gi|330506753|ref|YP_004383181.1| - 0.17 11.8 2.0 0.26 11.3 1.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) PMSR PF01625.16 gi|330506754|ref|YP_004383182.1| - 3.2e-64 215.5 0.3 5.4e-64 214.7 0.2 1.4 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.13 gi|330506754|ref|YP_004383182.1| - 7.6e-51 171.0 0.0 1.4e-50 170.1 0.0 1.4 1 0 0 1 1 1 1 SelR domain DUF1328 PF07043.8 gi|330506755|ref|YP_004383183.1| - 1.5e-07 31.2 13.4 3.6e-07 30.0 9.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) MpPF26 PF07666.6 gi|330506755|ref|YP_004383183.1| - 0.088 12.7 3.8 0.11 12.4 2.7 1.1 1 0 0 1 1 1 0 M penetrans paralogue family 26 DUF2109 PF09882.4 gi|330506755|ref|YP_004383183.1| - 0.26 11.2 4.2 0.59 10.1 2.9 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2109) Tetraspannin PF00335.15 gi|330506755|ref|YP_004383183.1| - 1.5 8.0 9.1 1.7 7.8 6.3 1.1 1 0 0 1 1 1 0 Tetraspanin family Herpes_US9 PF06072.6 gi|330506755|ref|YP_004383183.1| - 1.8 8.4 5.8 3.7 7.4 0.5 2.1 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 PrgI PF12666.2 gi|330506755|ref|YP_004383183.1| - 2.8 8.1 5.7 3.2 7.9 3.9 1.2 1 0 0 1 1 1 0 PrgI family protein DUF2304 PF10066.4 gi|330506755|ref|YP_004383183.1| - 3.3 7.5 9.2 1.5 8.6 1.6 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) DUF4229 PF14012.1 gi|330506755|ref|YP_004383183.1| - 9.6 6.1 11.1 13 5.7 7.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) DUF2079 PF09852.4 gi|330506756|ref|YP_004383184.1| - 0.013 14.2 3.2 0.014 14.1 2.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) TMCO5 PF14992.1 gi|330506756|ref|YP_004383184.1| - 0.091 11.8 0.7 0.12 11.5 0.5 1.1 1 0 0 1 1 1 0 TMCO5 family EmrE PF13536.1 gi|330506756|ref|YP_004383184.1| - 0.6 10.3 4.0 3.3 7.9 1.0 2.0 1 1 1 2 2 2 0 Multidrug resistance efflux transporter TPR_12 PF13424.1 gi|330506757|ref|YP_004383185.1| - 8.9e-12 44.7 48.5 0.033 14.1 0.5 10.0 5 3 7 12 12 12 8 Tetratricopeptide repeat Orexin PF02072.10 gi|330506757|ref|YP_004383185.1| - 0.12 12.2 0.5 3.4 7.4 0.1 3.0 3 0 0 3 3 3 0 Prepro-orexin Arfaptin PF06456.8 gi|330506757|ref|YP_004383185.1| - 0.16 11.2 5.2 0.18 11.1 0.1 3.2 3 1 0 3 3 3 0 Arfaptin-like domain TPR_16 PF13432.1 gi|330506757|ref|YP_004383185.1| - 0.83 10.4 47.8 0.85 10.3 0.0 9.3 6 3 4 10 10 10 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330506757|ref|YP_004383185.1| - 1.8 8.5 28.2 2.3 8.2 0.1 9.3 11 0 0 11 11 11 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330506757|ref|YP_004383185.1| - 3.9 8.3 39.2 3.4 8.5 0.1 10.1 9 2 4 13 13 13 0 Tetratricopeptide repeat ATC_hydrolase PF14196.1 gi|330506758|ref|YP_004383186.1| - 8.5e-06 26.2 0.2 1.4e-05 25.5 0.1 1.5 1 1 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase Fer4_19 PF06902.6 gi|330506759|ref|YP_004383187.1| - 2.7e-23 81.5 0.3 5.4e-23 80.6 0.2 1.5 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster zf-CDGSH PF09360.5 gi|330506759|ref|YP_004383187.1| - 3.2e-15 55.6 0.2 6.2e-15 54.7 0.1 1.5 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type Fer4_6 PF12837.2 gi|330506759|ref|YP_004383187.1| - 0.015 15.1 0.4 0.11 12.4 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|330506759|ref|YP_004383187.1| - 0.085 12.4 0.2 4.2 7.1 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330506759|ref|YP_004383187.1| - 0.11 13.1 0.0 0.45 11.1 0.0 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_7 PF12838.2 gi|330506759|ref|YP_004383187.1| - 0.17 12.2 1.5 17 5.8 0.2 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain MscL PF01741.13 gi|330506760|ref|YP_004383188.1| - 6.7e-41 139.4 2.4 7.8e-41 139.2 1.7 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL zf-ribbon_3 PF13248.1 gi|330506760|ref|YP_004383188.1| - 0.0029 16.7 0.6 0.0042 16.2 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|330506760|ref|YP_004383188.1| - 0.0059 16.2 4.8 0.009 15.6 3.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 UPF0239 PF06783.6 gi|330506760|ref|YP_004383188.1| - 0.015 15.2 0.6 0.019 14.8 0.0 1.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0239) UPF0220 PF05255.6 gi|330506760|ref|YP_004383188.1| - 0.019 14.1 1.2 0.027 13.7 0.5 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0220) DZR PF12773.2 gi|330506760|ref|YP_004383188.1| - 0.02 14.7 1.1 0.028 14.2 0.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon Vma12 PF11712.3 gi|330506760|ref|YP_004383188.1| - 0.048 13.3 0.2 0.2 11.3 0.0 1.8 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Gly-zipper_OmpA PF13436.1 gi|330506760|ref|YP_004383188.1| - 0.082 12.5 0.1 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain zinc_ribbon_2 PF13240.1 gi|330506760|ref|YP_004383188.1| - 0.88 9.1 4.2 2.6 7.6 3.1 1.6 1 1 1 2 2 2 0 zinc-ribbon domain DUF21 PF01595.15 gi|330506761|ref|YP_004383189.1| - 1.6e-51 174.2 7.6 2e-51 173.8 5.3 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|330506761|ref|YP_004383189.1| - 4.5e-25 87.2 0.0 1.1e-24 85.9 0.0 1.7 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|330506761|ref|YP_004383189.1| - 3.2e-16 58.8 0.1 6e-09 35.5 0.0 2.5 2 0 0 2 2 2 2 CBS domain QueC PF06508.8 gi|330506762|ref|YP_004383190.1| - 8.1e-69 231.0 0.0 9.1e-69 230.9 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|330506762|ref|YP_004383190.1| - 0.00024 20.6 0.0 0.0006 19.3 0.0 1.7 1 1 0 1 1 1 1 PP-loop family ThiI PF02568.9 gi|330506762|ref|YP_004383190.1| - 0.00032 20.2 0.0 0.00094 18.6 0.0 1.9 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|330506762|ref|YP_004383190.1| - 0.0049 16.3 0.0 0.0082 15.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|330506762|ref|YP_004383190.1| - 0.045 12.6 0.0 0.062 12.1 0.0 1.3 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.11 gi|330506762|ref|YP_004383190.1| - 0.14 10.7 0.0 0.23 9.9 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase DUF357 PF04010.8 gi|330506763|ref|YP_004383191.1| - 5.8e-13 48.3 0.0 7e-13 48.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Peptidase_M91 PF14891.1 gi|330506764|ref|YP_004383192.1| - 0.017 15.1 0.0 0.02 14.9 0.0 1.1 1 0 0 1 1 1 0 Effector protein Pyr_redox_2 PF07992.9 gi|330506765|ref|YP_004383193.1| - 5.8e-34 117.7 0.0 8.7e-34 117.1 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|330506765|ref|YP_004383193.1| - 2e-25 88.9 0.1 3.6e-25 88.1 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|330506765|ref|YP_004383193.1| - 1.1e-16 61.0 0.2 6.3e-15 55.3 0.0 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|330506765|ref|YP_004383193.1| - 3.2e-10 39.4 0.1 4.8e-08 32.2 0.2 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.19 gi|330506765|ref|YP_004383193.1| - 3.9e-07 29.3 8.6 0.011 14.6 0.8 3.4 3 1 0 3 3 3 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330506765|ref|YP_004383193.1| - 3e-05 23.0 7.9 0.00015 20.7 1.6 2.8 2 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|330506765|ref|YP_004383193.1| - 0.00012 21.3 0.2 0.00021 20.5 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|330506765|ref|YP_004383193.1| - 0.0017 18.3 1.4 0.27 11.2 0.1 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|330506765|ref|YP_004383193.1| - 0.0042 16.5 0.8 0.13 11.7 0.0 2.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.9 gi|330506765|ref|YP_004383193.1| - 0.011 14.2 2.1 0.16 10.4 0.4 2.7 3 0 0 3 3 3 0 HI0933-like protein 3HCDH_N PF02737.13 gi|330506765|ref|YP_004383193.1| - 0.015 14.9 0.6 1.2 8.7 0.0 2.5 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|330506765|ref|YP_004383193.1| - 0.029 13.5 0.0 4.6 6.3 0.0 2.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PTS_2-RNA PF01885.11 gi|330506765|ref|YP_004383193.1| - 0.069 12.4 0.0 0.15 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA 2'-phosphotransferase, Tpt1 / KptA family Radical_SAM PF04055.16 gi|330506766|ref|YP_004383194.1| - 9.1e-18 64.9 0.0 1.5e-17 64.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Nit_Regul_Hom PF10126.4 gi|330506766|ref|YP_004383194.1| - 0.01 15.5 0.0 0.34 10.6 0.0 2.3 1 1 1 2 2 2 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII Fer4_12 PF13353.1 gi|330506766|ref|YP_004383194.1| - 0.015 15.4 0.0 0.033 14.3 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330506766|ref|YP_004383194.1| - 0.056 13.4 0.0 0.17 11.8 0.0 1.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain LRR_4 PF12799.2 gi|330506767|ref|YP_004383195.1| - 1.7e-97 317.8 147.6 3.4e-12 45.6 1.3 11.7 1 1 10 14 14 14 14 Leucine Rich repeats (2 copies) LRR_8 PF13855.1 gi|330506767|ref|YP_004383195.1| - 7.5e-74 243.4 154.5 1.3e-11 44.0 3.5 9.7 1 1 11 13 13 13 13 Leucine rich repeat LRR_6 PF13516.1 gi|330506767|ref|YP_004383195.1| - 4.2e-40 131.2 122.7 0.02 14.9 0.9 20.4 10 5 11 21 21 21 18 Leucine Rich repeat LRR_7 PF13504.1 gi|330506767|ref|YP_004383195.1| - 3.8e-32 104.5 83.1 0.091 13.0 0.3 20.5 20 1 1 21 21 21 15 Leucine rich repeat LRR_1 PF00560.28 gi|330506767|ref|YP_004383195.1| - 1.6e-31 103.4 103.2 0.022 14.7 0.1 19.6 15 3 4 19 19 19 17 Leucine Rich Repeat LRR_9 PF14580.1 gi|330506767|ref|YP_004383195.1| - 1.8e-06 27.6 36.5 0.0099 15.4 3.8 6.0 1 1 6 8 8 8 6 Leucine-rich repeat PBP_like_2 PF12849.2 gi|330506768|ref|YP_004383196.1| - 7.4e-37 127.3 0.1 2.9e-36 125.4 0.1 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|330506768|ref|YP_004383196.1| - 1.1e-18 66.8 0.0 1.4e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|330506768|ref|YP_004383196.1| - 7.6e-07 28.9 0.0 9.2e-06 25.4 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|330506768|ref|YP_004383196.1| - 0.091 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF2156 PF09924.4 gi|330506769|ref|YP_004383197.1| - 0.0069 15.2 0.0 0.0078 15.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2156) NYN PF01936.13 gi|330506769|ref|YP_004383197.1| - 0.036 14.3 0.0 0.044 14.0 0.0 1.1 1 0 0 1 1 1 0 NYN domain CK2S PF15011.1 gi|330506769|ref|YP_004383197.1| - 0.15 11.8 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Casein Kinase 2 substrate zinc_ribbon_6 PF14599.1 gi|330506770|ref|YP_004383198.1| - 0.0055 16.4 0.8 0.013 15.2 0.6 1.7 1 1 0 1 1 1 1 Zinc-ribbon DZR PF12773.2 gi|330506770|ref|YP_004383198.1| - 0.0095 15.7 1.4 0.013 15.2 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330506770|ref|YP_004383198.1| - 0.02 14.0 2.4 0.26 10.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|330506770|ref|YP_004383198.1| - 0.036 13.5 1.7 0.67 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain LIM PF00412.17 gi|330506770|ref|YP_004383198.1| - 0.045 13.8 1.3 0.066 13.2 0.9 1.2 1 0 0 1 1 1 0 LIM domain OrfB_Zn_ribbon PF07282.6 gi|330506770|ref|YP_004383198.1| - 0.064 12.9 3.6 0.082 12.5 2.1 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|330506770|ref|YP_004383198.1| - 0.092 12.4 0.6 0.14 11.9 0.4 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|330506770|ref|YP_004383198.1| - 0.19 11.6 2.7 0.28 11.1 1.9 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|330506770|ref|YP_004383198.1| - 0.2 11.3 3.1 0.38 10.4 2.1 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2_3 PF13878.1 gi|330506770|ref|YP_004383198.1| - 0.28 10.7 1.9 0.9 9.1 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Ribosomal_S27e PF01667.12 gi|330506770|ref|YP_004383198.1| - 0.29 10.7 2.2 0.53 9.8 1.5 1.4 1 1 0 1 1 1 0 Ribosomal protein S27 zinc_ribbon_5 PF13719.1 gi|330506770|ref|YP_004383198.1| - 0.39 10.3 3.3 0.74 9.4 2.3 1.5 1 1 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|330506770|ref|YP_004383198.1| - 0.67 9.4 3.5 4.3 6.8 0.2 2.1 1 1 2 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Auto_anti-p27 PF06677.7 gi|330506770|ref|YP_004383198.1| - 0.81 9.4 3.5 2.2 8.0 2.4 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF329 PF03884.9 gi|330506770|ref|YP_004383198.1| - 1.6 8.3 4.8 4.1 7.0 3.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF329) MMR_HSR1 PF01926.18 gi|330506771|ref|YP_004383199.1| - 2e-18 66.4 0.0 3.8e-18 65.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|330506771|ref|YP_004383199.1| - 3.6e-17 61.9 0.0 7.1e-17 61.0 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|330506771|ref|YP_004383199.1| - 3.8e-15 55.5 0.0 4e-13 48.9 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|330506771|ref|YP_004383199.1| - 8.6e-05 22.4 1.7 0.048 13.4 0.1 2.7 2 1 1 3 3 3 2 Dynamin family SRPRB PF09439.5 gi|330506771|ref|YP_004383199.1| - 0.0053 15.9 0.9 0.042 13.0 0.0 2.5 3 0 0 3 3 3 1 Signal recognition particle receptor beta subunit DUF258 PF03193.11 gi|330506771|ref|YP_004383199.1| - 0.0082 15.3 0.0 0.028 13.6 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|330506771|ref|YP_004383199.1| - 0.009 16.5 0.2 0.023 15.1 0.0 1.9 2 0 0 2 2 2 1 Miro-like protein AIG1 PF04548.11 gi|330506771|ref|YP_004383199.1| - 0.0096 15.0 0.6 0.016 14.3 0.0 1.6 2 0 0 2 2 2 1 AIG1 family DUF724 PF05266.9 gi|330506771|ref|YP_004383199.1| - 0.61 9.6 3.0 0.95 9.0 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF3782 PF12644.2 gi|330506771|ref|YP_004383199.1| - 1.5 8.6 6.0 1.7 8.4 3.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) bZIP_2 PF07716.10 gi|330506771|ref|YP_004383199.1| - 4.2 7.2 6.3 5 7.0 0.3 2.3 2 0 0 2 2 2 0 Basic region leucine zipper Cas_Cas4 PF01930.12 gi|330506772|ref|YP_004383200.1| - 1.8e-06 27.9 0.0 1.9e-05 24.6 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|330506772|ref|YP_004383200.1| - 0.00053 19.4 0.1 0.0051 16.2 0.0 2.3 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|330506772|ref|YP_004383200.1| - 0.0014 17.8 0.0 0.0019 17.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) LysM PF01476.15 gi|330506773|ref|YP_004383201.1| - 0.0014 18.4 0.0 0.0042 16.9 0.0 1.9 1 1 0 1 1 1 1 LysM domain DUF4131 PF13567.1 gi|330506773|ref|YP_004383201.1| - 0.011 15.1 0.1 0.029 13.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) MerR-DNA-bind PF09278.6 gi|330506774|ref|YP_004383202.1| - 0.41 11.0 2.7 1.1 9.6 0.0 2.9 2 1 0 2 2 2 0 MerR, DNA binding DUF2064 PF09837.4 gi|330506775|ref|YP_004383203.1| - 0.48 10.0 4.5 9.5 5.8 0.0 4.1 5 0 0 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2064) Helicase_C_2 PF13307.1 gi|330506777|ref|YP_004383205.1| - 9.3e-29 100.5 0.0 2.1e-28 99.3 0.0 1.6 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|330506777|ref|YP_004383205.1| - 9.5e-18 64.2 0.0 3.6e-17 62.3 0.0 2.0 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|330506777|ref|YP_004383205.1| - 3.1e-07 30.3 0.0 0.00015 21.6 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|330506777|ref|YP_004383205.1| - 2.8e-05 23.6 0.1 0.2 11.1 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|330506777|ref|YP_004383205.1| - 0.002 17.8 0.1 0.005 16.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|330506777|ref|YP_004383205.1| - 0.0046 17.1 0.2 2.7 8.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|330506777|ref|YP_004383205.1| - 0.018 14.9 0.2 0.28 11.1 0.0 2.7 2 1 0 2 2 2 0 AAA ATPase domain PAR1 PF06521.6 gi|330506777|ref|YP_004383205.1| - 0.16 11.5 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 PAR1 protein AAA PF00004.24 gi|330506777|ref|YP_004383205.1| - 0.33 11.1 2.3 28 4.9 0.0 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF4632 PF15451.1 gi|330506777|ref|YP_004383205.1| - 9 6.3 7.8 3.7 7.5 1.4 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4632) DUF555 PF04475.7 gi|330506778|ref|YP_004383206.1| - 3.8e-45 152.0 0.0 4.3e-45 151.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zf-RanBP PF00641.13 gi|330506778|ref|YP_004383206.1| - 0.043 12.9 0.9 0.069 12.2 0.6 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Response_reg PF00072.19 gi|330506779|ref|YP_004383207.1| - 3.5e-39 133.2 0.1 7.5e-27 93.5 0.0 2.6 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.21 gi|330506779|ref|YP_004383207.1| - 1.1e-30 105.5 0.2 1.9e-30 104.8 0.2 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|330506779|ref|YP_004383207.1| - 7.9e-21 73.8 2.2 3e-20 71.9 0.0 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|330506779|ref|YP_004383207.1| - 1.7e-09 37.9 0.0 6.1e-09 36.1 0.0 2.1 1 1 0 1 1 1 1 PAS domain PAS PF00989.19 gi|330506779|ref|YP_004383207.1| - 3.5e-07 29.9 0.0 2.5e-06 27.2 0.0 2.4 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|330506779|ref|YP_004383207.1| - 2.3e-06 27.6 0.0 0.0031 17.5 0.0 3.3 4 0 0 4 4 4 2 PAS fold IncA PF04156.9 gi|330506779|ref|YP_004383207.1| - 0.013 15.1 0.3 0.013 15.1 0.2 2.4 2 0 0 2 2 2 0 IncA protein HATPase_c_3 PF13589.1 gi|330506779|ref|YP_004383207.1| - 0.014 15.0 0.0 0.032 13.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UPF0278 PF08745.6 gi|330506780|ref|YP_004383208.1| - 2.7e-86 288.0 0.1 3.1e-86 287.8 0.1 1.0 1 0 0 1 1 1 1 UPF0278 family DUF128 PF01995.11 gi|330506781|ref|YP_004383209.1| - 4.6e-76 254.8 0.2 5.2e-76 254.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 DNA_pol_B_thumb PF14791.1 gi|330506782|ref|YP_004383210.1| - 4.2e-24 84.0 0.0 9.1e-24 82.9 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|330506782|ref|YP_004383210.1| - 4.2e-22 78.1 3.4 1.9e-21 75.9 0.9 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.14 gi|330506782|ref|YP_004383210.1| - 8.7e-17 61.4 0.2 3.4e-16 59.5 0.0 2.0 2 0 0 2 2 2 1 PHP domain HHH_5 PF14520.1 gi|330506782|ref|YP_004383210.1| - 2.1e-11 43.8 0.7 0.00011 22.3 0.0 3.2 2 1 0 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.18 gi|330506782|ref|YP_004383210.1| - 5.8e-07 28.8 1.0 0.029 14.0 0.2 3.8 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|330506782|ref|YP_004383210.1| - 1.5e-06 28.2 0.1 8.7e-06 25.7 0.0 2.2 2 0 0 2 2 2 1 DNA polymerase beta palm HHH_3 PF12836.2 gi|330506782|ref|YP_004383210.1| - 0.0095 15.8 0.1 2 8.4 0.0 3.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF3701 PF12482.3 gi|330506782|ref|YP_004383210.1| - 0.024 14.3 0.1 3.8 7.3 0.0 2.7 1 1 0 2 2 2 0 Phage integrase protein Cdd1 PF11731.3 gi|330506782|ref|YP_004383210.1| - 0.044 13.7 0.1 2.1 8.3 0.0 2.6 1 1 1 2 2 2 0 Pathogenicity locus HHH_2 PF12826.2 gi|330506782|ref|YP_004383210.1| - 0.066 13.0 0.0 0.65 9.9 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif RNase_P_p30 PF01876.11 gi|330506782|ref|YP_004383210.1| - 0.067 12.4 0.0 0.19 10.9 0.0 1.8 1 1 0 1 1 1 0 RNase P subunit p30 Adenylsucc_synt PF00709.16 gi|330506783|ref|YP_004383211.1| - 1.9e-154 514.4 0.0 2.1e-154 514.2 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase RimK PF08443.6 gi|330506784|ref|YP_004383212.1| - 7.5e-33 113.6 0.0 9.3e-33 113.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|330506784|ref|YP_004383212.1| - 9.1e-13 47.7 0.0 1.4e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|330506784|ref|YP_004383212.1| - 6.5e-11 42.2 0.0 8.8e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|330506784|ref|YP_004383212.1| - 6.3e-10 39.1 0.0 1.6e-09 37.8 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330506784|ref|YP_004383212.1| - 2e-05 23.5 0.0 3.8e-05 22.6 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_YheCD PF14398.1 gi|330506784|ref|YP_004383212.1| - 0.0017 17.1 0.0 0.042 12.6 0.0 2.2 1 1 1 2 2 2 1 YheC/D like ATP-grasp AMP-binding PF00501.23 gi|330506785|ref|YP_004383213.1| - 1.3e-89 300.5 0.0 1.6e-89 300.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330506785|ref|YP_004383213.1| - 3.5e-18 66.3 0.6 9.3e-18 64.9 0.4 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Glyco_hydro_14 PF01373.12 gi|330506785|ref|YP_004383213.1| - 0.016 14.0 0.5 0.046 12.4 0.0 1.8 2 0 0 2 2 2 0 Glycosyl hydrolase family 14 DNA_pol_B_palm PF14792.1 gi|330506785|ref|YP_004383213.1| - 0.045 13.8 0.0 0.09 12.8 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase beta palm AMP-binding PF00501.23 gi|330506786|ref|YP_004383214.1| - 2.9e-90 302.6 0.0 3.5e-90 302.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330506786|ref|YP_004383214.1| - 1.8e-22 80.0 2.7 1.8e-22 80.0 1.8 2.7 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|330506787|ref|YP_004383215.1| - 1.2e-92 310.5 0.0 1.5e-92 310.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330506787|ref|YP_004383215.1| - 1.9e-23 83.1 4.7 2.3e-23 82.9 1.8 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|330506788|ref|YP_004383216.1| - 2.9e-91 305.9 0.0 4.8e-91 305.2 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330506788|ref|YP_004383216.1| - 1.7e-24 86.5 1.2 3e-24 85.7 0.8 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Radical_SAM PF04055.16 gi|330506789|ref|YP_004383217.1| - 2.8e-21 76.4 0.0 1e-20 74.6 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|330506789|ref|YP_004383217.1| - 1.7e-16 59.8 0.1 3.6e-16 58.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|330506789|ref|YP_004383217.1| - 1.1e-05 25.0 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 TRAM domain UPF0118 PF01594.11 gi|330506790|ref|YP_004383218.1| - 1.2e-38 132.9 31.5 1.5e-38 132.6 21.8 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 PetG PF02529.10 gi|330506790|ref|YP_004383218.1| - 4.1 7.0 8.0 1.6 8.2 0.4 3.1 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit 5 Glycos_transf_3 PF00591.16 gi|330506791|ref|YP_004383219.1| - 8.1e-62 208.8 0.0 1.1e-61 208.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|330506791|ref|YP_004383219.1| - 6.8e-18 64.0 0.1 1.6e-17 62.8 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Flagellin_IN PF07196.8 gi|330506791|ref|YP_004383219.1| - 0.13 12.2 1.0 0.35 10.8 0.7 1.6 1 0 0 1 1 1 0 Flagellin hook IN motif ADH_N PF08240.7 gi|330506792|ref|YP_004383220.1| - 1.2e-27 95.7 0.2 2.1e-27 95.0 0.2 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|330506792|ref|YP_004383220.1| - 2.1e-07 30.5 0.0 2.9e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DBI_PRT PF02277.12 gi|330506793|ref|YP_004383221.1| - 2.5e-20 72.8 1.2 3.6e-20 72.3 0.9 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase DUF2057 PF09829.4 gi|330506794|ref|YP_004383222.1| - 0.15 11.6 3.6 0.9 9.1 0.4 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2057) MSP1_C PF07462.6 gi|330506794|ref|YP_004383222.1| - 0.31 9.3 1.2 0.42 8.9 0.9 1.1 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus SLA_LP_auto_ag PF05889.8 gi|330506796|ref|YP_004383224.1| - 1.7e-50 171.6 0.0 2.8e-50 170.9 0.0 1.3 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|330506796|ref|YP_004383224.1| - 1e-12 47.5 0.0 1.6e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|330506796|ref|YP_004383224.1| - 1.3e-08 34.2 0.0 1.9e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.15 gi|330506796|ref|YP_004383224.1| - 0.0022 16.6 0.0 0.0032 16.0 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Beta_elim_lyase PF01212.16 gi|330506796|ref|YP_004383224.1| - 0.0023 17.1 0.0 0.003 16.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|330506796|ref|YP_004383224.1| - 0.02 13.9 0.0 0.054 12.5 0.0 1.7 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family GDC-P PF02347.11 gi|330506796|ref|YP_004383224.1| - 0.045 12.4 0.0 0.065 11.9 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.15 gi|330506796|ref|YP_004383224.1| - 0.12 10.6 0.0 0.18 10.0 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|330506796|ref|YP_004383224.1| - 0.16 10.3 0.0 0.23 9.8 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain zf-like PF04071.7 gi|330506797|ref|YP_004383225.1| - 3.6e-30 103.4 6.5 6.4e-30 102.7 4.5 1.4 1 0 0 1 1 1 1 Cysteine-rich small domain GDPD PF03009.12 gi|330506797|ref|YP_004383225.1| - 9.2e-29 100.7 0.0 2.8e-26 92.5 0.0 2.2 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|330506797|ref|YP_004383225.1| - 0.0073 16.4 0.1 0.018 15.2 0.1 1.7 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family HD PF01966.17 gi|330506799|ref|YP_004383227.1| - 2.5e-11 43.6 0.3 6.8e-11 42.2 0.2 1.8 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|330506799|ref|YP_004383227.1| - 0.0024 17.1 0.0 0.007 15.6 0.0 1.7 2 0 0 2 2 2 1 HDOD domain NAC PF01849.13 gi|330506800|ref|YP_004383228.1| - 4.5e-16 58.1 0.1 6e-16 57.7 0.1 1.2 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|330506800|ref|YP_004383228.1| - 0.00012 21.8 0.7 0.00017 21.3 0.1 1.6 2 0 0 2 2 2 1 UBA/TS-N domain DUF554 PF04474.7 gi|330506801|ref|YP_004383229.1| - 0.11 11.6 0.1 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF554) PAC2 PF09754.4 gi|330506803|ref|YP_004383231.1| - 1.5e-28 100.1 0.0 1.8e-28 99.9 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF89 PF01937.14 gi|330506804|ref|YP_004383232.1| - 5.5e-36 124.0 0.1 5.2e-35 120.8 0.1 2.3 1 1 0 1 1 1 1 Protein of unknown function DUF89 Hist_deacetyl PF00850.14 gi|330506805|ref|YP_004383233.1| - 5.7e-43 147.3 0.7 2e-41 142.3 0.6 1.9 1 1 1 2 2 2 2 Histone deacetylase domain Glyco_tranf_2_4 PF13704.1 gi|330506805|ref|YP_004383233.1| - 0.1 12.9 0.1 0.31 11.3 0.0 1.9 2 1 0 2 2 2 0 Glycosyl transferase family 2 Glycos_trans_3N PF02885.12 gi|330506806|ref|YP_004383234.1| - 1.6e-13 50.0 0.1 5.9e-13 48.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.16 gi|330506806|ref|YP_004383234.1| - 3.8e-13 49.4 0.2 1.9e-12 47.1 0.1 1.9 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.8 gi|330506806|ref|YP_004383234.1| - 1.2e-12 47.0 0.0 2.9e-12 45.8 0.0 1.7 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Molydop_binding PF01568.16 gi|330506806|ref|YP_004383234.1| - 0.00075 19.2 0.1 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Peptidase_C26 PF07722.8 gi|330506806|ref|YP_004383234.1| - 0.075 12.4 0.1 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 DUF2254 PF10011.4 gi|330506806|ref|YP_004383234.1| - 0.14 10.6 0.0 0.21 10.0 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) NTP_transf_2 PF01909.18 gi|330506807|ref|YP_004383235.1| - 0.0019 18.4 0.0 0.0039 17.4 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Sua5_yciO_yrdC PF01300.13 gi|330506808|ref|YP_004383236.1| - 7.2e-47 158.9 0.0 8.1e-47 158.7 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination HTH_31 PF13560.1 gi|330506809|ref|YP_004383237.1| - 3.7e-06 27.0 0.1 6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|330506809|ref|YP_004383237.1| - 1.5e-05 24.7 1.3 2.4e-05 24.0 0.9 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|330506809|ref|YP_004383237.1| - 0.00041 20.3 0.9 0.001 19.0 0.6 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|330506809|ref|YP_004383237.1| - 0.00051 19.6 0.3 0.0026 17.3 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain AAA PF00004.24 gi|330506810|ref|YP_004383238.1| - 1.2e-42 145.1 0.0 2.4e-42 144.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|330506810|ref|YP_004383238.1| - 2.5e-06 27.5 0.0 5.6e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|330506810|ref|YP_004383238.1| - 3.3e-06 27.2 0.1 1.6e-05 25.0 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|330506810|ref|YP_004383238.1| - 1.2e-05 25.0 0.7 0.00011 21.9 0.1 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|330506810|ref|YP_004383238.1| - 3.1e-05 24.1 0.2 0.0013 18.8 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|330506810|ref|YP_004383238.1| - 5.3e-05 24.0 0.2 0.00033 21.4 0.0 2.1 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|330506810|ref|YP_004383238.1| - 0.00027 20.0 0.0 0.00095 18.2 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|330506810|ref|YP_004383238.1| - 0.00044 19.0 0.0 0.00086 18.1 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus AAA_28 PF13521.1 gi|330506810|ref|YP_004383238.1| - 0.00044 20.2 0.0 0.001 19.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|330506810|ref|YP_004383238.1| - 0.00047 19.8 0.2 0.0013 18.4 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|330506810|ref|YP_004383238.1| - 0.00093 19.0 0.6 0.0019 18.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|330506810|ref|YP_004383238.1| - 0.001 18.4 0.0 0.0021 17.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|330506810|ref|YP_004383238.1| - 0.0017 17.9 0.0 0.0052 16.3 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|330506810|ref|YP_004383238.1| - 0.0028 16.8 0.0 0.0054 15.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DUF815 PF05673.8 gi|330506810|ref|YP_004383238.1| - 0.0035 16.3 0.0 0.0062 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|330506810|ref|YP_004383238.1| - 0.0045 17.1 0.0 0.0082 16.3 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_30 PF13604.1 gi|330506810|ref|YP_004383238.1| - 0.006 16.1 0.1 0.012 15.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|330506810|ref|YP_004383238.1| - 0.0081 16.4 0.2 0.03 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|330506810|ref|YP_004383238.1| - 0.0092 15.6 0.2 0.081 12.5 0.1 2.2 2 0 0 2 2 2 1 NACHT domain Mg_chelatase PF01078.16 gi|330506810|ref|YP_004383238.1| - 0.01 14.9 0.5 0.03 13.4 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|330506810|ref|YP_004383238.1| - 0.013 14.6 0.1 0.056 12.5 0.0 2.0 2 0 0 2 2 2 0 KaiC Torsin PF06309.6 gi|330506810|ref|YP_004383238.1| - 0.015 15.1 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 Torsin CPT PF07931.7 gi|330506810|ref|YP_004383238.1| - 0.021 14.4 0.0 0.047 13.3 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein NB-ARC PF00931.17 gi|330506810|ref|YP_004383238.1| - 0.028 13.2 0.0 0.046 12.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.1 gi|330506810|ref|YP_004383238.1| - 0.031 14.1 0.0 0.06 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|330506810|ref|YP_004383238.1| - 0.032 13.8 0.1 0.17 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|330506810|ref|YP_004383238.1| - 0.039 14.0 0.0 0.091 12.8 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|330506810|ref|YP_004383238.1| - 0.046 13.1 0.0 0.16 11.4 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|330506810|ref|YP_004383238.1| - 0.055 13.7 0.1 0.38 11.0 0.0 2.2 2 0 0 2 2 2 0 ABC transporter AAA_25 PF13481.1 gi|330506810|ref|YP_004383238.1| - 0.059 12.7 3.7 0.27 10.6 0.1 2.6 2 1 1 3 3 2 0 AAA domain Arch_ATPase PF01637.13 gi|330506810|ref|YP_004383238.1| - 0.064 12.9 0.6 2.7 7.6 0.0 2.9 2 1 0 2 2 2 0 Archaeal ATPase NTPase_1 PF03266.10 gi|330506810|ref|YP_004383238.1| - 0.067 12.9 0.1 0.21 11.2 0.1 1.9 1 1 0 1 1 1 0 NTPase PhoH PF02562.11 gi|330506810|ref|YP_004383238.1| - 0.084 12.0 0.0 0.16 11.2 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Parvo_NS1 PF01057.12 gi|330506810|ref|YP_004383238.1| - 0.1 11.4 0.0 0.25 10.2 0.0 1.6 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 OrfB_Zn_ribbon PF07282.6 gi|330506814|ref|YP_004383242.1| - 2.3e-24 84.8 0.1 6.8e-24 83.3 0.0 1.9 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330506814|ref|YP_004383242.1| - 2.2e-11 43.6 2.4 2.7e-11 43.2 1.6 1.1 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|330506814|ref|YP_004383242.1| - 0.029 14.0 0.0 0.069 12.8 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|330506814|ref|YP_004383242.1| - 0.031 14.0 0.8 0.071 12.9 0.6 1.6 1 0 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.6 gi|330506814|ref|YP_004383242.1| - 0.042 13.9 5.5 1.2 9.2 4.3 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1610) DUF772 PF05598.6 gi|330506815|ref|YP_004383243.1| - 4.3e-20 71.3 0.0 8.1e-20 70.5 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|330506815|ref|YP_004383243.1| - 2.7e-11 43.4 6.5 4.8e-10 39.3 4.5 2.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|330506815|ref|YP_004383243.1| - 1.5e-05 24.9 0.5 2.6e-05 24.2 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330506815|ref|YP_004383243.1| - 2.2e-05 24.1 0.2 6.3e-05 22.6 0.1 1.8 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_2 PF13586.1 gi|330506815|ref|YP_004383243.1| - 0.015 15.4 2.0 0.02 15.0 0.1 2.0 2 0 0 2 2 2 0 Transposase DDE domain Mad3_BUB1_I PF08311.7 gi|330506816|ref|YP_004383244.1| - 0.047 13.4 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 OrfB_Zn_ribbon PF07282.6 gi|330506817|ref|YP_004383245.1| - 3.1e-11 42.7 0.4 3.7e-11 42.5 0.3 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|330506817|ref|YP_004383245.1| - 0.0058 16.4 0.3 0.0095 15.7 0.2 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330506817|ref|YP_004383245.1| - 0.014 14.5 3.7 0.084 12.1 2.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|330506817|ref|YP_004383245.1| - 0.027 14.3 2.2 0.053 13.3 1.5 1.5 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|330506817|ref|YP_004383245.1| - 0.028 13.9 2.8 0.74 9.3 0.6 2.1 1 1 1 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|330506817|ref|YP_004383245.1| - 0.041 13.8 1.0 0.086 12.8 0.7 1.6 1 1 0 1 1 1 0 Zinc ribbon domain RNHCP PF12647.2 gi|330506817|ref|YP_004383245.1| - 0.05 13.4 0.2 0.05 13.4 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain Zn_Tnp_IS91 PF14319.1 gi|330506817|ref|YP_004383245.1| - 0.082 12.4 0.1 0.09 12.2 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF2072 PF09845.4 gi|330506817|ref|YP_004383245.1| - 0.088 12.7 0.5 0.11 12.4 0.4 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Nudix_N_2 PF14803.1 gi|330506817|ref|YP_004383245.1| - 0.13 11.9 0.5 5.1 6.8 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal RecR PF02132.10 gi|330506817|ref|YP_004383245.1| - 0.18 11.2 1.9 3.8 7.0 0.1 2.2 1 1 1 2 2 2 0 RecR protein zf-Mss51 PF13824.1 gi|330506817|ref|YP_004383245.1| - 0.32 10.8 2.7 1.9 8.4 1.9 1.9 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-tcix PF14952.1 gi|330506817|ref|YP_004383245.1| - 0.33 10.3 1.9 2.8 7.3 0.0 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding TF_Zn_Ribbon PF08271.7 gi|330506817|ref|YP_004383245.1| - 0.34 10.2 2.7 1.8 7.9 0.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|330506817|ref|YP_004383245.1| - 0.71 9.4 3.3 3.1 7.4 2.3 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF1610 PF07754.6 gi|330506817|ref|YP_004383245.1| - 0.75 9.9 5.2 8.2 6.6 3.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) DUF1936 PF09151.5 gi|330506817|ref|YP_004383245.1| - 1.3 8.6 3.4 2.7 7.5 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) UPF0547 PF10571.4 gi|330506817|ref|YP_004383245.1| - 1.8 8.3 6.9 17 5.2 4.8 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|330506817|ref|YP_004383245.1| - 4 7.3 4.9 7.6 6.4 1.9 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF21 PF01595.15 gi|330506818|ref|YP_004383246.1| - 3.2e-60 202.5 6.9 4.4e-60 202.1 4.8 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|330506818|ref|YP_004383246.1| - 1.2e-23 82.6 0.5 2.5e-23 81.6 0.3 1.5 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|330506818|ref|YP_004383246.1| - 5.9e-17 61.1 0.4 9.1e-08 31.7 0.2 2.7 2 0 0 2 2 2 2 CBS domain Pyr_redox_2 PF07992.9 gi|330506819|ref|YP_004383247.1| - 4.5e-23 82.1 0.0 1.4e-22 80.6 0.0 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330506819|ref|YP_004383247.1| - 2.7e-14 53.2 0.3 2.3e-08 34.3 0.0 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|330506819|ref|YP_004383247.1| - 1.5e-12 47.4 0.0 4.7e-12 45.9 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|330506819|ref|YP_004383247.1| - 9.8e-11 41.1 0.5 0.017 14.0 0.0 3.3 2 1 1 3 3 3 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|330506819|ref|YP_004383247.1| - 1.6e-07 31.6 0.0 0.0062 16.6 0.0 3.2 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|330506819|ref|YP_004383247.1| - 5.5e-06 25.0 0.0 0.0076 14.7 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_9 PF13454.1 gi|330506819|ref|YP_004383247.1| - 7.4e-06 25.8 0.0 0.083 12.6 0.0 3.2 3 0 0 3 3 3 2 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|330506819|ref|YP_004383247.1| - 0.00045 19.2 0.0 0.054 12.4 0.0 2.3 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Amino_oxidase PF01593.19 gi|330506819|ref|YP_004383247.1| - 0.092 11.7 0.0 0.2 10.6 0.0 1.4 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Transposase_mut PF00872.13 gi|330506820|ref|YP_004383248.1| - 1.3e-101 339.9 0.1 1.4e-101 339.7 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|330506820|ref|YP_004383248.1| - 2.4e-12 46.8 0.0 4.6e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.12 gi|330506820|ref|YP_004383248.1| - 0.0017 18.0 0.1 0.0042 16.7 0.1 1.7 1 1 0 1 1 1 1 Transposase DDE_Tnp_IS240 PF13610.1 gi|330506820|ref|YP_004383248.1| - 0.063 13.2 0.0 0.19 11.6 0.0 1.7 1 1 0 1 1 1 0 DDE domain HTH_12 PF08461.5 gi|330506820|ref|YP_004383248.1| - 0.16 11.6 1.7 0.43 10.3 0.1 2.5 3 1 0 3 3 3 0 Ribonuclease R winged-helix domain DDE_Tnp_ISAZ013 PF07592.6 gi|330506821|ref|YP_004383249.1| - 1.9e-135 450.5 0.0 2.3e-135 450.3 0.0 1.1 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain HTH_Tnp_Tc3_2 PF01498.13 gi|330506821|ref|YP_004383249.1| - 5.9e-06 26.2 0.0 1.7e-05 24.7 0.0 1.8 1 0 0 1 1 1 1 Transposase HTH_29 PF13551.1 gi|330506821|ref|YP_004383249.1| - 6.2e-06 26.3 0.1 1.5e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_21 PF13276.1 gi|330506821|ref|YP_004383249.1| - 0.00052 19.9 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 HTH-like domain HTH_32 PF13565.1 gi|330506821|ref|YP_004383249.1| - 0.00067 20.3 0.4 0.0024 18.6 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain GSH-S_N PF02951.9 gi|330506821|ref|YP_004383249.1| - 0.0019 17.9 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain HTH_36 PF13730.1 gi|330506821|ref|YP_004383249.1| - 0.0099 15.9 0.3 0.94 9.6 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|330506821|ref|YP_004383249.1| - 0.027 14.1 0.6 0.096 12.4 0.0 2.2 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_23 PF13384.1 gi|330506821|ref|YP_004383249.1| - 0.11 12.1 0.0 18 5.1 0.0 2.8 2 0 0 2 2 2 0 Homeodomain-like domain KfrA_N PF11740.3 gi|330506821|ref|YP_004383249.1| - 0.17 12.3 0.0 3.3 8.1 0.0 2.2 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term HTH_28 PF13518.1 gi|330506821|ref|YP_004383249.1| - 0.25 11.3 3.4 2.2 8.3 0.0 2.9 3 0 0 3 3 2 0 Helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|330506822|ref|YP_004383250.1| - 5.3e-14 52.2 0.0 8.4e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain TBD PF12845.2 gi|330506822|ref|YP_004383250.1| - 0.064 12.8 0.1 11 5.6 0.1 2.7 2 0 0 2 2 2 0 TBD domain Herpes_U44 PF04533.8 gi|330506822|ref|YP_004383250.1| - 0.094 11.9 0.4 0.2 10.9 0.3 1.4 1 0 0 1 1 1 0 Herpes virus U44 protein MULE PF10551.4 gi|330506823|ref|YP_004383251.1| - 3.2e-08 33.6 0.0 8.8e-08 32.2 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|330506823|ref|YP_004383251.1| - 6.6e-07 28.8 1.0 8.8e-06 25.1 0.7 2.0 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|330506823|ref|YP_004383251.1| - 0.012 15.7 0.1 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain DZR PF12773.2 gi|330506823|ref|YP_004383251.1| - 0.026 14.3 2.1 0.059 13.1 1.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|330506823|ref|YP_004383251.1| - 0.056 13.7 3.1 0.12 12.6 0.8 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Terminase_GpA PF05876.7 gi|330506823|ref|YP_004383251.1| - 0.35 9.1 1.3 5.3 5.2 0.2 2.1 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) zf-ISL3 PF14690.1 gi|330506823|ref|YP_004383251.1| - 1.4 8.9 3.8 1.4 9.0 0.7 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|330506823|ref|YP_004383251.1| - 1.6 8.0 5.8 12 5.2 1.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DDE_Tnp_2 PF04693.7 gi|330506824|ref|YP_004383252.1| - 1.2e-12 47.4 6.5 4e-11 42.4 4.4 2.3 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_5 PF13546.1 gi|330506824|ref|YP_004383252.1| - 1.4e-12 47.0 0.0 4.3e-12 45.4 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|330506824|ref|YP_004383252.1| - 3.7e-09 36.4 2.6 7.3e-09 35.4 1.7 1.6 1 1 0 1 1 1 1 Transposase DDE domain Colicin_M PF14859.1 gi|330506824|ref|YP_004383252.1| - 0.1 11.4 0.3 0.17 10.7 0.2 1.3 1 0 0 1 1 1 0 Colicin M Y1_Tnp PF01797.11 gi|330506825|ref|YP_004383253.1| - 7.9e-31 106.4 0.0 9.3e-31 106.2 0.0 1.1 1 0 0 1 1 1 1 Transposase IS200 like Fer4_NifH PF00142.13 gi|330506826|ref|YP_004383254.1| - 3.9e-128 426.3 1.7 4.3e-128 426.2 1.2 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|330506826|ref|YP_004383254.1| - 4.7e-08 32.6 0.2 1.3e-07 31.2 0.1 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|330506826|ref|YP_004383254.1| - 1.6e-05 24.1 0.1 2.8e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|330506826|ref|YP_004383254.1| - 0.00013 21.8 0.0 0.0005 20.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|330506826|ref|YP_004383254.1| - 0.00091 18.3 0.1 0.0018 17.4 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|330506826|ref|YP_004383254.1| - 0.00099 18.5 0.2 0.67 9.2 0.0 2.1 2 0 0 2 2 2 2 YhjQ protein ArgK PF03308.11 gi|330506826|ref|YP_004383254.1| - 0.0036 16.1 0.1 0.0056 15.5 0.0 1.3 1 0 0 1 1 1 1 ArgK protein RNA_helicase PF00910.17 gi|330506826|ref|YP_004383254.1| - 0.007 16.5 0.1 0.017 15.2 0.0 1.7 2 0 0 2 2 2 1 RNA helicase AAA_10 PF12846.2 gi|330506826|ref|YP_004383254.1| - 0.009 15.4 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|330506826|ref|YP_004383254.1| - 0.026 13.9 0.0 0.051 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|330506826|ref|YP_004383254.1| - 0.039 13.3 0.6 0.079 12.3 0.4 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_24 PF13479.1 gi|330506826|ref|YP_004383254.1| - 0.073 12.6 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|330506826|ref|YP_004383254.1| - 0.096 12.6 0.0 0.2 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain DUF87 PF01935.12 gi|330506826|ref|YP_004383254.1| - 0.11 12.2 0.2 0.22 11.2 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF87 NB-ARC PF00931.17 gi|330506826|ref|YP_004383254.1| - 0.11 11.2 0.6 0.22 10.3 0.4 1.4 1 0 0 1 1 1 0 NB-ARC domain Ku PF02735.11 gi|330506826|ref|YP_004383254.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Ku70/Ku80 beta-barrel domain P-II PF00543.17 gi|330506827|ref|YP_004383255.1| - 2e-32 111.7 1.8 2.2e-32 111.5 1.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|330506827|ref|YP_004383255.1| - 0.0047 16.8 0.2 0.032 14.1 0.1 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF970) P-II PF00543.17 gi|330506828|ref|YP_004383256.1| - 9e-32 109.5 0.3 1.2e-31 109.1 0.2 1.2 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.14 gi|330506829|ref|YP_004383257.1| - 1.9e-132 441.6 0.0 2.4e-132 441.3 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|330506830|ref|YP_004383258.1| - 4.1e-119 397.7 0.0 4.7e-119 397.5 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|330506831|ref|YP_004383259.1| - 5.1e-128 427.1 0.0 5.8e-128 426.9 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase RuvB_N PF05496.7 gi|330506831|ref|YP_004383259.1| - 0.012 14.6 0.0 0.02 13.9 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus HAD PF12710.2 gi|330506831|ref|YP_004383259.1| - 0.06 13.4 0.0 0.14 12.3 0.0 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Oxidored_nitro PF00148.14 gi|330506832|ref|YP_004383260.1| - 1e-121 406.3 0.0 1.1e-121 406.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SBP_bac_11 PF13531.1 gi|330506833|ref|YP_004383261.1| - 1.7e-49 168.5 0.0 1.9e-49 168.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|330506833|ref|YP_004383261.1| - 3.9e-10 39.9 0.2 1.9e-09 37.7 0.1 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|330506833|ref|YP_004383261.1| - 2e-09 36.6 0.0 3.1e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_6 PF13343.1 gi|330506833|ref|YP_004383261.1| - 2.6e-06 26.9 0.1 3.5e-06 26.5 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein OpuAC PF04069.7 gi|330506833|ref|YP_004383261.1| - 0.025 13.9 0.1 0.096 12.0 0.0 1.9 3 0 0 3 3 3 0 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.17 gi|330506834|ref|YP_004383262.1| - 1.3e-18 67.2 17.7 1.3e-18 67.2 12.3 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TMEM191C PF15194.1 gi|330506834|ref|YP_004383262.1| - 2.6 7.9 5.6 1.8 8.4 1.7 2.2 2 0 0 2 2 2 0 TMEM191C family DUF948 PF06103.6 gi|330506834|ref|YP_004383262.1| - 3.5 7.5 13.7 5 7.0 0.5 3.4 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) ABC_tran PF00005.22 gi|330506835|ref|YP_004383263.1| - 1.3e-33 116.2 0.0 1.7e-33 115.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330506835|ref|YP_004383263.1| - 2e-09 37.8 0.0 1.9e-07 31.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330506835|ref|YP_004383263.1| - 0.00031 20.0 0.0 0.23 10.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|330506835|ref|YP_004383263.1| - 0.00078 18.8 0.0 0.0018 17.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|330506835|ref|YP_004383263.1| - 0.0011 18.9 1.3 0.0067 16.4 0.9 1.9 1 1 0 1 1 1 1 AAA ATPase domain Miro PF08477.8 gi|330506835|ref|YP_004383263.1| - 0.002 18.5 0.0 0.0054 17.2 0.0 1.6 2 0 0 2 2 2 1 Miro-like protein AAA_15 PF13175.1 gi|330506835|ref|YP_004383263.1| - 0.0048 15.9 0.0 0.37 9.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|330506835|ref|YP_004383263.1| - 0.0053 15.9 0.0 0.0091 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|330506835|ref|YP_004383263.1| - 0.0083 15.7 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|330506835|ref|YP_004383263.1| - 0.018 14.7 0.1 0.17 11.5 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.1 gi|330506835|ref|YP_004383263.1| - 0.021 14.9 0.2 0.089 12.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|330506835|ref|YP_004383263.1| - 0.029 13.8 0.0 0.054 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|330506835|ref|YP_004383263.1| - 0.052 13.7 0.0 0.19 11.9 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|330506835|ref|YP_004383263.1| - 0.052 13.8 0.0 0.072 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|330506835|ref|YP_004383263.1| - 0.053 13.0 0.2 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_ATPase PF09818.4 gi|330506835|ref|YP_004383263.1| - 0.069 11.7 0.0 2.7 6.4 0.0 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|330506835|ref|YP_004383263.1| - 0.11 12.1 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase SbcCD_C PF13558.1 gi|330506835|ref|YP_004383263.1| - 0.12 12.3 0.2 0.48 10.3 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.7 gi|330506835|ref|YP_004383263.1| - 0.18 10.8 0.5 0.65 9.0 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin S-layer PF07752.6 gi|330506836|ref|YP_004383264.1| - 1.5e-87 293.0 9.1 1.4e-15 57.2 0.0 6.1 1 1 5 6 6 6 6 S-layer protein PrcB_C PF14343.1 gi|330506836|ref|YP_004383264.1| - 4.7e-08 32.6 5.6 2.1 8.1 0.0 6.3 6 0 0 6 6 6 3 PrcB C-terminal DUF2744 PF10910.3 gi|330506836|ref|YP_004383264.1| - 0.0012 18.6 0.0 15 5.4 0.0 4.3 5 0 0 5 5 5 2 Protein of unknown function (DUF2744) DUF2140 PF09911.4 gi|330506836|ref|YP_004383264.1| - 0.016 14.4 0.5 2.4 7.2 0.1 2.9 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2140) GUN4 PF05419.7 gi|330506836|ref|YP_004383264.1| - 0.032 14.0 0.0 0.81 9.5 0.0 2.9 3 0 0 3 3 3 0 GUN4-like DUF3876 PF12992.2 gi|330506836|ref|YP_004383264.1| - 0.05 13.5 0.0 7.5 6.5 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function, B. Theta Gene description (DUF3876) His_biosynth PF00977.16 gi|330506837|ref|YP_004383265.1| - 1.5e-75 253.3 0.3 1.8e-75 253.1 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|330506837|ref|YP_004383265.1| - 1.2e-07 30.9 0.1 1.8e-05 23.7 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|330506837|ref|YP_004383265.1| - 2.1e-07 30.2 0.3 0.0004 19.5 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|330506837|ref|YP_004383265.1| - 8.3e-07 28.4 1.1 0.00023 20.4 0.2 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.12 gi|330506837|ref|YP_004383265.1| - 2.8e-05 23.3 0.3 0.13 11.3 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|330506837|ref|YP_004383265.1| - 0.0012 17.8 0.8 0.019 13.8 0.1 2.0 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain PcrB PF01884.12 gi|330506837|ref|YP_004383265.1| - 0.052 12.7 0.2 0.081 12.1 0.1 1.3 1 0 0 1 1 1 0 PcrB family DHO_dh PF01180.16 gi|330506837|ref|YP_004383265.1| - 0.13 11.2 0.4 3.4 6.5 0.1 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase OrfB_IS605 PF01385.14 gi|330506838|ref|YP_004383266.1| - 2.1e-40 138.5 1.2 2.7e-40 138.1 0.1 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330506838|ref|YP_004383266.1| - 1.1e-23 82.6 0.1 2.5e-23 81.4 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330506838|ref|YP_004383266.1| - 4.7e-20 70.6 2.5 9.7e-20 69.6 1.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|330506838|ref|YP_004383266.1| - 0.023 14.5 0.2 0.044 13.5 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon Ammonium_transp PF00909.16 gi|330506839|ref|YP_004383267.1| - 1.8e-26 92.5 12.1 2.6e-26 92.0 8.4 1.2 1 0 0 1 1 1 1 Ammonium Transporter Family TrbC PF04956.8 gi|330506839|ref|YP_004383267.1| - 0.9 9.5 21.3 1.6 8.7 7.0 3.7 2 1 0 2 2 2 0 TrbC/VIRB2 family DUF772 PF05598.6 gi|330506840|ref|YP_004383268.1| - 6.3e-23 80.4 0.0 1.1e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|330506840|ref|YP_004383268.1| - 1.2e-15 57.5 0.5 2e-15 56.9 0.4 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330506840|ref|YP_004383268.1| - 3.5e-06 26.7 0.3 1.4e-05 24.7 0.0 1.9 2 0 0 2 2 2 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|330506840|ref|YP_004383268.1| - 2.3e-05 24.2 0.1 5.6e-05 22.9 0.1 1.6 1 1 0 1 1 1 1 Transposase DDE domain DUF3502 PF12010.3 gi|330506840|ref|YP_004383268.1| - 0.0068 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3502) DDE_Tnp_1_6 PF13751.1 gi|330506840|ref|YP_004383268.1| - 0.058 13.3 0.1 0.11 12.5 0.1 1.5 1 0 0 1 1 1 0 Transposase DDE domain Ammonium_transp PF00909.16 gi|330506841|ref|YP_004383269.1| - 1.1e-76 257.8 15.2 1.3e-76 257.6 10.5 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family TIM-br_sig_trns PF09370.5 gi|330506841|ref|YP_004383269.1| - 0.0072 15.4 0.1 0.01 14.9 0.1 1.2 1 0 0 1 1 1 1 TIM-barrel signal transduction protein DUF1049 PF06305.6 gi|330506841|ref|YP_004383269.1| - 0.75 9.3 0.1 0.75 9.3 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1049) P-II PF00543.17 gi|330506842|ref|YP_004383270.1| - 1e-40 138.2 1.4 1.2e-40 138.1 1.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|330506842|ref|YP_004383270.1| - 0.00082 19.3 0.2 0.0067 16.3 0.1 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF970) MFS_1 PF07690.11 gi|330506844|ref|YP_004383272.1| - 1.3e-07 30.6 18.7 1.9e-07 30.1 12.9 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|330506844|ref|YP_004383272.1| - 0.0011 17.4 9.7 0.0011 17.4 6.7 2.0 1 1 0 2 2 2 1 MFS/sugar transport protein DUF3760 PF12586.3 gi|330506844|ref|YP_004383272.1| - 0.095 12.5 0.2 0.26 11.1 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3760) DUF4526 PF15029.1 gi|330506844|ref|YP_004383272.1| - 0.1 12.1 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4526) rve_2 PF13333.1 gi|330506845|ref|YP_004383273.1| - 6.1e-09 35.8 0.6 8.5e-09 35.3 0.4 1.2 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330506845|ref|YP_004383273.1| - 5e-08 32.3 0.1 6.3e-08 32.0 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain MULE PF10551.4 gi|330506846|ref|YP_004383274.1| - 3.2e-08 33.6 0.0 8.8e-08 32.2 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|330506846|ref|YP_004383274.1| - 6.6e-07 28.8 1.0 8.8e-06 25.1 0.7 2.0 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|330506846|ref|YP_004383274.1| - 0.012 15.7 0.1 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain DZR PF12773.2 gi|330506846|ref|YP_004383274.1| - 0.026 14.3 2.1 0.059 13.1 1.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|330506846|ref|YP_004383274.1| - 0.056 13.7 3.1 0.12 12.6 0.8 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Terminase_GpA PF05876.7 gi|330506846|ref|YP_004383274.1| - 0.35 9.1 1.3 5.3 5.2 0.2 2.1 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) zf-ISL3 PF14690.1 gi|330506846|ref|YP_004383274.1| - 1.4 8.9 3.8 1.4 9.0 0.7 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|330506846|ref|YP_004383274.1| - 1.6 8.0 5.8 12 5.2 1.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain rve PF00665.21 gi|330506847|ref|YP_004383275.1| - 7.6e-23 80.8 0.0 1.2e-22 80.2 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.1 gi|330506847|ref|YP_004383275.1| - 5.3e-17 61.5 0.2 1.2e-16 60.4 0.1 1.5 1 0 0 1 1 1 1 HTH-like domain rve_3 PF13683.1 gi|330506847|ref|YP_004383275.1| - 6.1e-06 25.6 0.0 1.7e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain XPG_I_2 PF12813.2 gi|330506847|ref|YP_004383275.1| - 0.023 14.1 0.1 0.14 11.6 0.1 2.1 1 1 1 2 2 2 0 XPG domain containing DDE_Tnp_IS240 PF13610.1 gi|330506847|ref|YP_004383275.1| - 0.029 14.3 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 DDE domain HTH_Tnp_1 PF01527.15 gi|330506848|ref|YP_004383276.1| - 9.6e-12 44.6 0.1 1.3e-11 44.2 0.1 1.4 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|330506848|ref|YP_004383276.1| - 0.00019 20.9 0.0 0.00041 19.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330506848|ref|YP_004383276.1| - 0.0016 18.3 0.0 0.0033 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|330506848|ref|YP_004383276.1| - 0.0021 18.1 0.1 0.0026 17.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|330506848|ref|YP_004383276.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain GnsAB PF08178.6 gi|330506848|ref|YP_004383276.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 GnsA/GnsB family Transposase_mut PF00872.13 gi|330506849|ref|YP_004383277.1| - 7.4e-20 70.8 0.0 7.8e-20 70.7 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family DDE_Tnp_IS240 PF13610.1 gi|330506849|ref|YP_004383277.1| - 0.011 15.6 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 0 DDE domain Pyr_excise PF03013.9 gi|330506849|ref|YP_004383277.1| - 0.13 12.0 0.3 0.18 11.5 0.2 1.2 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase Transposase_mut PF00872.13 gi|330506850|ref|YP_004383278.1| - 2.4e-11 42.8 0.0 2.9e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|330506850|ref|YP_004383278.1| - 0.0023 18.0 0.0 0.0027 17.8 0.0 1.1 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.13 gi|330506851|ref|YP_004383279.1| - 2.1e-51 174.6 0.0 2.3e-51 174.5 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family HTH_26 PF13443.1 gi|330506851|ref|YP_004383279.1| - 0.043 14.0 0.0 0.07 13.3 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain UPF0158 PF03682.8 gi|330506852|ref|YP_004383280.1| - 0.0001 21.9 3.8 0.00013 21.6 2.6 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0158) Ribosomal_S13 PF00416.17 gi|330506853|ref|YP_004383281.1| - 1.4e-29 102.6 0.5 1.8e-29 102.3 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.20 gi|330506854|ref|YP_004383282.1| - 8.7e-14 50.6 0.3 2e-13 49.5 0.2 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|330506854|ref|YP_004383282.1| - 0.047 14.0 1.7 0.13 12.7 0.8 1.9 1 1 0 1 1 1 0 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|330506855|ref|YP_004383283.1| - 1.8e-40 137.5 0.8 2.2e-40 137.2 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|330506856|ref|YP_004383284.1| - 8.7e-22 77.4 0.0 1.5e-20 73.4 0.0 2.2 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|330506856|ref|YP_004383284.1| - 4.4e-11 41.7 0.0 6e-11 41.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.22 gi|330506856|ref|YP_004383284.1| - 7e-08 31.7 15.1 7.8e-06 25.2 2.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330506856|ref|YP_004383284.1| - 5e-07 29.8 28.3 7.3e-06 26.1 7.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330506856|ref|YP_004383284.1| - 1.9e-05 24.9 24.1 0.0002 21.6 8.6 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330506856|ref|YP_004383284.1| - 7.2e-05 22.4 2.3 7.2e-05 22.4 1.6 2.9 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330506856|ref|YP_004383284.1| - 0.00037 20.4 9.8 0.063 13.3 4.4 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330506856|ref|YP_004383284.1| - 0.00038 21.1 6.4 0.0054 17.4 1.2 2.8 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|330506856|ref|YP_004383284.1| - 0.00066 19.4 11.1 0.00066 19.4 7.7 2.2 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330506856|ref|YP_004383284.1| - 0.00089 19.6 5.2 0.00089 19.6 3.6 3.6 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330506856|ref|YP_004383284.1| - 0.0011 18.7 4.7 0.0011 18.7 3.2 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|330506856|ref|YP_004383284.1| - 0.0063 16.7 4.6 0.0063 16.7 3.2 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|330506856|ref|YP_004383284.1| - 0.0065 16.8 11.1 0.0073 16.7 2.7 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330506856|ref|YP_004383284.1| - 0.018 15.6 2.6 0.018 15.6 1.8 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|330506856|ref|YP_004383284.1| - 0.036 14.3 0.8 0.036 14.3 0.5 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain Sigma70_r4_2 PF08281.7 gi|330506858|ref|YP_004383286.1| - 1.4e-07 30.8 0.1 2.6e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.10 gi|330506858|ref|YP_004383286.1| - 1.4e-06 28.0 0.2 3.2e-06 26.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|330506858|ref|YP_004383286.1| - 7.1e-06 25.5 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|330506858|ref|YP_004383286.1| - 5.6e-05 22.6 0.1 0.0013 18.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|330506858|ref|YP_004383286.1| - 9.4e-05 22.3 0.1 0.00016 21.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_22 PF13309.1 gi|330506858|ref|YP_004383286.1| - 0.00014 21.5 0.8 0.00076 19.1 0.1 2.1 2 1 0 2 2 2 1 HTH domain HTH_Mga PF08280.6 gi|330506858|ref|YP_004383286.1| - 0.00029 20.5 0.1 0.00052 19.7 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_30 PF13556.1 gi|330506858|ref|YP_004383286.1| - 0.0008 18.9 0.0 0.0017 17.8 0.0 1.5 2 0 0 2 2 1 1 PucR C-terminal helix-turn-helix domain HTH_29 PF13551.1 gi|330506858|ref|YP_004383286.1| - 0.0019 18.3 0.1 0.0024 18.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_1 PF01527.15 gi|330506858|ref|YP_004383286.1| - 0.0021 17.9 0.1 0.0027 17.6 0.0 1.4 1 1 0 1 1 1 1 Transposase Phage_int_SAM_1 PF02899.12 gi|330506858|ref|YP_004383286.1| - 0.0021 18.1 0.0 0.0029 17.7 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Sigma70_r4 PF04545.11 gi|330506858|ref|YP_004383286.1| - 0.0021 17.3 0.1 0.0044 16.2 0.0 1.6 2 0 0 2 2 1 1 Sigma-70, region 4 GerE PF00196.14 gi|330506858|ref|YP_004383286.1| - 0.0056 15.9 0.1 0.009 15.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family FHIPEP PF00771.15 gi|330506858|ref|YP_004383286.1| - 0.0065 14.8 0.6 0.0077 14.6 0.4 1.0 1 0 0 1 1 1 1 FHIPEP family Phage_NinH PF06322.6 gi|330506858|ref|YP_004383286.1| - 0.008 15.7 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 Phage NinH protein HTH_40 PF14493.1 gi|330506858|ref|YP_004383286.1| - 0.0081 16.3 0.3 0.012 15.8 0.2 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain DUF939_C PF11728.3 gi|330506858|ref|YP_004383286.1| - 0.013 15.3 0.1 0.016 15.0 0.0 1.1 1 0 0 1 1 1 0 DUF939 C-terminal domain HTH_36 PF13730.1 gi|330506858|ref|YP_004383286.1| - 0.014 15.5 0.1 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain NUMOD1 PF07453.8 gi|330506858|ref|YP_004383286.1| - 0.015 15.1 0.4 0.036 13.9 0.2 1.6 1 0 0 1 1 1 0 NUMOD1 domain DUF2089 PF09862.4 gi|330506858|ref|YP_004383286.1| - 0.018 14.8 0.4 0.024 14.4 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Recombinase PF07508.8 gi|330506858|ref|YP_004383286.1| - 0.023 14.9 0.3 0.23 11.7 0.1 2.3 1 1 1 2 2 2 0 Recombinase Seryl_tRNA_N PF02403.17 gi|330506858|ref|YP_004383286.1| - 0.028 14.4 0.3 0.034 14.1 0.2 1.2 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain HTH_10 PF04967.7 gi|330506858|ref|YP_004383286.1| - 0.029 13.9 0.0 0.066 12.8 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_11 PF08279.7 gi|330506858|ref|YP_004383286.1| - 0.032 13.8 0.1 0.061 12.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain Mga PF05043.8 gi|330506858|ref|YP_004383286.1| - 0.056 13.7 0.1 0.098 12.9 0.1 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain BrkDBD PF09607.5 gi|330506858|ref|YP_004383286.1| - 0.099 12.2 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Brinker DNA-binding domain HTH_24 PF13412.1 gi|330506858|ref|YP_004383286.1| - 0.1 12.0 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|330506858|ref|YP_004383286.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_ISL3 PF13542.1 gi|330506858|ref|YP_004383286.1| - 0.13 11.4 0.2 0.37 10.0 0.0 1.9 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 rve PF00665.21 gi|330506859|ref|YP_004383287.1| - 1.4e-10 41.2 0.0 2e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain rve PF00665.21 gi|330506860|ref|YP_004383288.1| - 2.8e-15 56.4 0.0 5.3e-15 55.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|330506860|ref|YP_004383288.1| - 1.9e-09 37.6 0.8 3.6e-09 36.7 0.6 1.5 1 0 0 1 1 1 1 Winged helix-turn helix rve_3 PF13683.1 gi|330506860|ref|YP_004383288.1| - 4.1e-06 26.2 1.2 4.4e-05 22.9 0.1 2.9 2 1 0 2 2 2 1 Integrase core domain HTH_21 PF13276.1 gi|330506860|ref|YP_004383288.1| - 5e-06 26.4 9.8 5.1e-06 26.3 1.0 3.7 4 1 1 5 5 4 1 HTH-like domain HTH_23 PF13384.1 gi|330506860|ref|YP_004383288.1| - 1.1e-05 24.8 0.2 2.7e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330506860|ref|YP_004383288.1| - 0.00014 21.7 0.3 0.00014 21.7 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|330506860|ref|YP_004383288.1| - 0.00025 21.7 2.0 0.00026 21.6 0.1 2.1 2 0 0 2 2 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|330506860|ref|YP_004383288.1| - 0.011 15.3 0.2 0.022 14.4 0.1 1.4 1 0 0 1 1 1 0 HTH domain PAX PF00292.13 gi|330506860|ref|YP_004383288.1| - 0.013 15.1 0.1 0.027 14.1 0.0 1.6 2 0 0 2 2 2 0 'Paired box' domain HTH_Tnp_ISL3 PF13542.1 gi|330506860|ref|YP_004383288.1| - 0.017 14.3 0.1 0.038 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 NDUFA12 PF05071.11 gi|330506860|ref|YP_004383288.1| - 0.088 13.2 0.5 0.21 12.0 0.4 1.6 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase subunit NDUFA12 Integrase_1 PF12835.2 gi|330506860|ref|YP_004383288.1| - 0.45 10.2 3.6 0.7 9.6 2.5 1.2 1 0 0 1 1 1 0 Integrase Peripla_BP_2 PF01497.13 gi|330506863|ref|YP_004383291.1| - 3.5e-41 140.9 0.0 4.3e-41 140.5 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein CbiC PF02570.10 gi|330506864|ref|YP_004383292.1| - 8e-58 195.1 0.6 9.1e-58 194.9 0.4 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase Peptidase_C13 PF01650.13 gi|330506865|ref|YP_004383293.1| - 6.9e-10 38.6 0.0 3e-08 33.3 0.0 2.4 2 1 0 2 2 2 1 Peptidase C13 family Peptidase_C14 PF00656.17 gi|330506865|ref|YP_004383293.1| - 1e-06 28.6 0.1 1.9e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Caspase domain EF-hand_5 PF13202.1 gi|330506865|ref|YP_004383293.1| - 0.069 12.5 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 EF hand Peripla_BP_2 PF01497.13 gi|330506867|ref|YP_004383295.1| - 2.9e-32 111.6 0.0 3.9e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF4224 PF13986.1 gi|330506867|ref|YP_004383295.1| - 0.15 11.6 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) DDE_Tnp_1 PF01609.16 gi|330506868|ref|YP_004383296.1| - 9.5e-23 80.8 0.0 1.4e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|330506868|ref|YP_004383296.1| - 0.0076 16.4 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|330506868|ref|YP_004383296.1| - 0.011 14.7 0.3 0.017 14.1 0.2 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 CobN-Mg_chel PF02514.11 gi|330506869|ref|YP_004383297.1| - 0 1341.7 0.0 0 1341.5 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|330506869|ref|YP_004383297.1| - 0.059 12.9 0.0 0.16 11.5 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain Peripla_BP_2 PF01497.13 gi|330506870|ref|YP_004383298.1| - 1.8e-21 76.3 0.0 2.3e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|330506871|ref|YP_004383299.1| - 5e-37 127.2 0.5 6.5e-37 126.9 0.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Diphtheria_T PF02764.9 gi|330506871|ref|YP_004383299.1| - 0.055 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Diphtheria toxin, T domain Peripla_BP_2 PF01497.13 gi|330506872|ref|YP_004383300.1| - 1.6e-34 119.1 0.0 2.1e-34 118.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF2102 PF09875.4 gi|330506873|ref|YP_004383301.1| - 7.9e-33 112.1 0.0 3.2e-27 94.0 0.0 2.0 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2102) CbiZ PF01955.13 gi|330506874|ref|YP_004383302.1| - 2e-53 181.0 0.4 2.8e-53 180.5 0.3 1.2 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase CN_hydrolase PF00795.17 gi|330506875|ref|YP_004383303.1| - 1.7e-52 177.4 0.0 5.2e-25 87.8 0.0 2.1 2 0 0 2 2 2 2 Carbon-nitrogen hydrolase CobN-Mg_chel PF02514.11 gi|330506876|ref|YP_004383304.1| - 0 1329.8 0.0 0 1329.5 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|330506876|ref|YP_004383304.1| - 0.037 13.5 0.0 0.11 12.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain Phage_min_cap2 PF06152.6 gi|330506876|ref|YP_004383304.1| - 0.27 10.1 0.1 1.3 7.8 0.6 1.7 2 0 0 2 2 2 0 Phage minor capsid protein 2 Radical_SAM PF04055.16 gi|330506877|ref|YP_004383305.1| - 2.1e-12 47.5 0.0 4.5e-12 46.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|330506877|ref|YP_004383305.1| - 1.8e-08 34.3 0.0 5.9e-08 32.7 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330506877|ref|YP_004383305.1| - 4.8e-06 26.7 0.0 1.1e-05 25.6 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|330506877|ref|YP_004383305.1| - 0.00026 21.2 0.1 0.00067 19.9 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain DHquinase_II PF01220.14 gi|330506878|ref|YP_004383306.1| - 0.016 14.5 0.1 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 Dehydroquinase class II Lge1 PF11488.3 gi|330506878|ref|YP_004383306.1| - 0.093 12.9 0.4 0.14 12.3 0.3 1.4 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 FecCD PF01032.13 gi|330506879|ref|YP_004383307.1| - 1.4e-93 313.1 35.2 1.8e-93 312.8 24.4 1.0 1 0 0 1 1 1 1 FecCD transport family BPD_transp_2 PF02653.11 gi|330506879|ref|YP_004383307.1| - 3.1 6.6 42.9 0.18 10.7 22.8 2.5 1 1 1 2 2 2 0 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|330506880|ref|YP_004383308.1| - 2.5e-33 115.2 0.0 3.6e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330506880|ref|YP_004383308.1| - 5.4e-12 46.2 0.6 1.9e-05 24.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|330506880|ref|YP_004383308.1| - 2.4e-06 26.8 0.5 0.012 14.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|330506880|ref|YP_004383308.1| - 1.8e-05 24.1 0.6 0.00089 18.5 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|330506880|ref|YP_004383308.1| - 8.2e-05 22.7 1.5 0.0028 17.7 1.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330506880|ref|YP_004383308.1| - 0.00015 21.8 0.0 0.00024 21.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|330506880|ref|YP_004383308.1| - 0.00049 19.5 0.1 0.00099 18.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|330506880|ref|YP_004383308.1| - 0.00073 18.1 0.0 0.34 9.3 0.0 2.0 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|330506880|ref|YP_004383308.1| - 0.0017 18.2 0.1 0.025 14.4 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|330506880|ref|YP_004383308.1| - 0.0019 18.5 0.0 0.0033 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|330506880|ref|YP_004383308.1| - 0.0045 16.7 0.1 0.0085 15.8 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|330506880|ref|YP_004383308.1| - 0.0045 16.1 0.1 0.025 13.7 0.0 2.1 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI NB-ARC PF00931.17 gi|330506880|ref|YP_004383308.1| - 0.0065 15.3 0.6 0.011 14.6 0.1 1.6 2 0 0 2 2 2 1 NB-ARC domain AAA PF00004.24 gi|330506880|ref|YP_004383308.1| - 0.0078 16.4 0.2 0.23 11.6 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|330506880|ref|YP_004383308.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|330506880|ref|YP_004383308.1| - 0.015 14.9 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.9 gi|330506880|ref|YP_004383308.1| - 0.016 14.9 0.1 0.82 9.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|330506880|ref|YP_004383308.1| - 0.02 14.7 0.0 0.13 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|330506880|ref|YP_004383308.1| - 0.02 14.4 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_ATPase PF09818.4 gi|330506880|ref|YP_004383308.1| - 0.03 12.9 0.3 1.3 7.5 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class RNA12 PF10443.4 gi|330506880|ref|YP_004383308.1| - 0.03 12.8 0.0 0.052 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein Arch_ATPase PF01637.13 gi|330506880|ref|YP_004383308.1| - 0.03 14.0 0.1 0.12 12.0 0.1 1.9 1 1 0 1 1 1 0 Archaeal ATPase SRP54 PF00448.17 gi|330506880|ref|YP_004383308.1| - 0.036 13.4 0.3 0.09 12.2 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Rad17 PF03215.10 gi|330506880|ref|YP_004383308.1| - 0.043 12.5 0.0 0.055 12.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|330506880|ref|YP_004383308.1| - 0.046 12.8 0.0 0.07 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ArgK PF03308.11 gi|330506880|ref|YP_004383308.1| - 0.054 12.2 0.0 0.093 11.4 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_30 PF13604.1 gi|330506880|ref|YP_004383308.1| - 0.068 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|330506880|ref|YP_004383308.1| - 0.077 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain cobW PF02492.14 gi|330506880|ref|YP_004383308.1| - 0.077 12.4 0.2 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|330506880|ref|YP_004383308.1| - 0.088 12.5 0.8 0.43 10.2 0.1 2.0 2 0 0 2 2 2 0 NTPase Zeta_toxin PF06414.7 gi|330506880|ref|YP_004383308.1| - 0.097 11.7 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|330506880|ref|YP_004383308.1| - 0.11 12.2 1.0 0.4 10.3 0.1 2.1 2 0 0 2 2 2 0 NACHT domain ATP_bind_1 PF03029.12 gi|330506880|ref|YP_004383308.1| - 0.11 11.9 0.1 0.27 10.7 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|330506880|ref|YP_004383308.1| - 0.14 13.0 0.8 0.5 11.1 0.4 2.2 1 1 0 1 1 1 0 AAA domain VWA_2 PF13519.1 gi|330506881|ref|YP_004383309.1| - 2.9e-21 76.3 0.0 1.3e-20 74.2 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|330506881|ref|YP_004383309.1| - 1.6e-14 53.9 0.0 4.2e-13 49.4 0.0 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|330506881|ref|YP_004383309.1| - 2.1e-10 40.4 0.0 2.6e-06 27.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|330506881|ref|YP_004383309.1| - 1.7e-09 37.1 0.0 7e-07 28.6 0.0 2.8 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|330506881|ref|YP_004383309.1| - 2.6e-05 23.2 1.9 0.0023 16.8 0.9 3.3 2 1 0 2 2 2 1 MCM2/3/5 family VWA_CoxE PF05762.9 gi|330506881|ref|YP_004383309.1| - 0.00032 19.9 0.1 0.00058 19.0 0.1 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein Sigma54_activat PF00158.21 gi|330506881|ref|YP_004383309.1| - 0.0064 15.9 0.0 0.34 10.3 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|330506881|ref|YP_004383309.1| - 0.012 15.5 0.0 0.012 15.5 0.0 2.0 2 0 0 2 2 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|330506881|ref|YP_004383309.1| - 0.026 14.6 0.0 0.093 12.8 0.0 2.0 1 0 0 1 1 1 0 AAA domain Fer4_11 PF13247.1 gi|330506881|ref|YP_004383309.1| - 0.056 13.3 0.1 0.14 12.0 0.1 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Mg_chelatase_2 PF13335.1 gi|330506881|ref|YP_004383309.1| - 0.072 13.4 1.7 0.14 12.5 0.2 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Shisa PF13908.1 gi|330506881|ref|YP_004383309.1| - 0.57 10.3 7.3 1.2 9.3 5.0 1.6 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Peptidase_S49_N PF08496.5 gi|330506881|ref|YP_004383309.1| - 0.96 9.2 10.3 20 4.9 0.0 2.5 2 0 0 2 2 2 0 Peptidase family S49 N-terminal RR_TM4-6 PF06459.7 gi|330506881|ref|YP_004383309.1| - 1.3 8.8 18.4 2.3 8.0 12.7 1.3 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 Ycf1 PF05758.7 gi|330506881|ref|YP_004383309.1| - 2.9 5.4 10.4 4.1 5.0 7.2 1.2 1 0 0 1 1 1 0 Ycf1 Hid1 PF12722.2 gi|330506881|ref|YP_004383309.1| - 8 4.0 13.8 11 3.6 9.6 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Neur_chan_memb PF02932.11 gi|330506881|ref|YP_004383309.1| - 9.9 5.9 8.1 16 5.2 5.6 1.4 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region ABC_tran PF00005.22 gi|330506882|ref|YP_004383310.1| - 1.5e-31 109.5 0.0 2.2e-31 108.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330506882|ref|YP_004383310.1| - 2.3e-16 60.6 0.4 1.3e-11 45.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330506882|ref|YP_004383310.1| - 0.00017 20.8 0.0 0.00033 19.9 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|330506882|ref|YP_004383310.1| - 0.002 17.2 0.0 0.12 11.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|330506882|ref|YP_004383310.1| - 0.0021 18.4 0.3 0.0059 16.9 0.1 1.3 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|330506882|ref|YP_004383310.1| - 0.0044 16.4 0.1 0.012 15.1 0.1 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain SbcCD_C PF13558.1 gi|330506882|ref|YP_004383310.1| - 0.0074 16.1 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|330506882|ref|YP_004383310.1| - 0.025 14.1 0.1 0.044 13.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|330506882|ref|YP_004383310.1| - 0.032 13.6 0.1 6.9 6.0 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_28 PF13521.1 gi|330506882|ref|YP_004383310.1| - 0.039 13.9 0.0 0.06 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|330506882|ref|YP_004383310.1| - 0.047 13.8 0.6 1.1 9.4 0.4 2.6 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|330506882|ref|YP_004383310.1| - 0.056 11.8 0.0 0.37 9.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|330506882|ref|YP_004383310.1| - 0.075 13.0 0.6 0.19 11.7 0.4 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|330506882|ref|YP_004383310.1| - 0.076 12.8 0.4 0.34 10.7 0.3 2.0 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.19 gi|330506883|ref|YP_004383311.1| - 7.2e-23 80.8 18.5 7.2e-23 80.8 12.8 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330506883|ref|YP_004383311.1| - 1e-08 34.6 26.5 1e-08 34.6 18.4 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|330506883|ref|YP_004383311.1| - 0.0035 16.5 25.8 0.011 14.9 17.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein PepSY_TM_3 PF13706.1 gi|330506883|ref|YP_004383311.1| - 4.4 6.7 10.9 0.49 9.8 2.4 2.9 2 0 0 2 2 2 0 PepSY-associated TM helix FecCD PF01032.13 gi|330506884|ref|YP_004383312.1| - 2.2e-09 36.5 0.5 2.3e-09 36.5 0.4 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|330506885|ref|YP_004383313.1| - 2.7e-32 111.8 0.0 3.9e-32 111.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein RHH_1 PF01402.16 gi|330506887|ref|YP_004383315.1| - 4.3e-08 32.7 0.2 7.9e-08 31.8 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|330506887|ref|YP_004383315.1| - 1.1e-05 25.0 0.1 1.7e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain Cohesin_HEAT PF12765.2 gi|330506887|ref|YP_004383315.1| - 0.048 13.6 0.5 0.9 9.5 0.0 2.7 3 0 0 3 3 3 0 HEAT repeat associated with sister chromatid cohesion Plasmid_stabil PF05016.9 gi|330506888|ref|YP_004383316.1| - 2.5e-09 37.3 0.0 2.9e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|330506888|ref|YP_004383316.1| - 0.0022 17.9 0.0 0.0027 17.7 0.0 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) FeoA PF04023.9 gi|330506889|ref|YP_004383317.1| - 7.6e-17 61.0 1.6 8.3e-17 60.9 1.1 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|330506890|ref|YP_004383318.1| - 1e-49 167.7 0.0 1.5e-49 167.2 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|330506890|ref|YP_004383318.1| - 1.1e-28 99.3 24.1 1.1e-15 57.4 5.1 3.3 4 0 0 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|330506890|ref|YP_004383318.1| - 4.2e-16 58.9 0.0 6.7e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|330506890|ref|YP_004383318.1| - 1.5e-13 49.9 1.8 1.5e-13 49.9 1.2 2.5 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus SRPRB PF09439.5 gi|330506890|ref|YP_004383318.1| - 0.0017 17.5 0.0 0.0025 17.0 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|330506890|ref|YP_004383318.1| - 0.019 15.4 0.0 0.033 14.6 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein GTP_EFTU PF00009.22 gi|330506890|ref|YP_004383318.1| - 0.14 11.5 0.0 0.28 10.5 0.0 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain HEAT_2 PF13646.1 gi|330506891|ref|YP_004383319.1| - 8.6e-16 58.0 4.7 1.1e-12 48.0 0.6 2.7 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.11 gi|330506891|ref|YP_004383319.1| - 5.9e-09 35.5 2.3 0.00075 19.7 0.1 4.6 3 1 0 3 3 3 2 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|330506891|ref|YP_004383319.1| - 2.7e-05 23.8 1.4 0.11 12.6 0.0 4.5 5 0 0 5 5 5 1 HEAT repeat HEAT_EZ PF13513.1 gi|330506891|ref|YP_004383319.1| - 0.42 11.1 0.1 0.42 11.1 0.1 3.9 4 1 1 5 5 5 0 HEAT-like repeat NIR_SIR PF01077.17 gi|330506892|ref|YP_004383320.1| - 3.3e-22 78.5 0.2 5.1e-22 77.9 0.1 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain Fer4 PF00037.22 gi|330506892|ref|YP_004383320.1| - 2.9e-16 58.3 16.2 3.1e-08 32.8 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330506892|ref|YP_004383320.1| - 4.7e-15 54.7 14.0 2.8e-07 30.0 4.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330506892|ref|YP_004383320.1| - 8e-15 54.3 23.0 2e-10 40.2 9.0 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain NIR_SIR_ferr PF03460.12 gi|330506892|ref|YP_004383320.1| - 3.2e-14 52.3 0.1 5.2e-14 51.6 0.1 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_2 PF12797.2 gi|330506892|ref|YP_004383320.1| - 7.2e-13 47.6 14.5 3.1e-06 26.7 2.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330506892|ref|YP_004383320.1| - 2.5e-12 46.9 31.1 3.5e-10 40.1 10.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330506892|ref|YP_004383320.1| - 6.1e-09 36.0 31.7 2.4e-07 30.8 11.1 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330506892|ref|YP_004383320.1| - 2.1e-08 33.8 35.5 6.8e-06 25.8 9.0 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330506892|ref|YP_004383320.1| - 6.1e-08 32.5 11.4 0.00019 21.4 0.2 2.6 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330506892|ref|YP_004383320.1| - 1.1e-07 32.3 9.6 0.0009 19.7 0.1 3.6 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|330506892|ref|YP_004383320.1| - 2e-07 30.8 18.6 0.00039 20.5 2.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330506892|ref|YP_004383320.1| - 8.8e-07 29.5 7.5 0.013 16.2 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|330506892|ref|YP_004383320.1| - 1.7e-05 25.1 11.0 0.0014 18.9 0.1 3.3 4 0 0 4 4 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|330506892|ref|YP_004383320.1| - 2.1e-05 24.7 21.9 0.0067 16.9 4.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330506892|ref|YP_004383320.1| - 0.00043 20.5 15.5 0.042 14.1 1.8 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330506892|ref|YP_004383320.1| - 0.00098 19.5 21.8 0.031 14.6 3.8 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain ABC_tran PF00005.22 gi|330506893|ref|YP_004383321.1| - 1.8e-27 96.3 0.0 2.4e-27 95.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330506893|ref|YP_004383321.1| - 1.3e-16 61.3 0.1 5.1e-11 43.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|330506893|ref|YP_004383321.1| - 0.00095 19.1 0.5 0.0084 16.1 0.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|330506893|ref|YP_004383321.1| - 0.0036 17.4 0.1 0.025 14.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|330506893|ref|YP_004383321.1| - 0.013 15.8 0.0 0.022 15.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|330506893|ref|YP_004383321.1| - 0.018 14.9 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|330506893|ref|YP_004383321.1| - 0.038 13.7 0.0 0.066 12.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|330506893|ref|YP_004383321.1| - 0.047 13.2 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|330506893|ref|YP_004383321.1| - 0.059 12.4 0.0 0.32 9.9 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|330506893|ref|YP_004383321.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|330506893|ref|YP_004383321.1| - 0.13 11.6 0.0 0.38 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|330506893|ref|YP_004383321.1| - 0.18 10.9 0.4 15 4.6 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SMC_N PF02463.14 gi|330506893|ref|YP_004383321.1| - 0.18 10.9 0.0 6.1 6.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane PF01061.19 gi|330506894|ref|YP_004383322.1| - 9e-27 93.6 15.2 9e-27 93.6 10.5 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330506894|ref|YP_004383322.1| - 5.1e-16 58.6 21.3 6.6e-16 58.2 14.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|330506894|ref|YP_004383322.1| - 1.5e-10 40.4 16.8 2.6e-10 39.6 11.7 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|330506894|ref|YP_004383322.1| - 0.0069 15.6 11.0 0.011 14.8 7.6 1.4 1 0 0 1 1 1 1 CcmB protein ABC2_membrane_4 PF12730.2 gi|330506894|ref|YP_004383322.1| - 0.018 14.1 20.7 0.05 12.7 14.4 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein CGGC PF08821.6 gi|330506895|ref|YP_004383323.1| - 1.3e-33 115.2 0.4 1.5e-33 115.0 0.3 1.0 1 0 0 1 1 1 1 CGGC domain XdhC_CoxI PF02625.11 gi|330506895|ref|YP_004383323.1| - 0.12 12.0 0.1 0.18 11.4 0.1 1.2 1 0 0 1 1 1 0 XdhC and CoxI family Methyltransf_11 PF08241.7 gi|330506896|ref|YP_004383324.1| - 1.3e-16 60.8 0.0 2.3e-16 60.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330506896|ref|YP_004383324.1| - 1.6e-09 37.6 0.0 2.4e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330506896|ref|YP_004383324.1| - 2.3e-06 28.1 0.0 5.5e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330506896|ref|YP_004383324.1| - 6.8e-06 26.4 0.0 1.5e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330506896|ref|YP_004383324.1| - 5.6e-05 22.3 0.0 8.4e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|330506896|ref|YP_004383324.1| - 0.00012 21.7 0.0 0.00038 20.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|330506896|ref|YP_004383324.1| - 0.00078 18.8 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.1 gi|330506896|ref|YP_004383324.1| - 0.0016 18.7 0.0 0.0034 17.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330506896|ref|YP_004383324.1| - 0.031 14.2 0.3 0.11 12.5 0.2 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_9 PF08003.6 gi|330506896|ref|YP_004383324.1| - 0.054 12.1 0.0 0.07 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_11 PF08241.7 gi|330506897|ref|YP_004383325.1| - 2.2e-16 60.1 0.0 4.7e-16 59.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330506897|ref|YP_004383325.1| - 1.7e-13 50.4 0.0 3.6e-13 49.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330506897|ref|YP_004383325.1| - 1.1e-11 45.2 0.0 2.4e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330506897|ref|YP_004383325.1| - 1.5e-10 40.5 0.0 3.9e-10 39.2 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|330506897|ref|YP_004383325.1| - 2.5e-09 37.4 0.0 5.3e-08 33.1 0.0 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330506897|ref|YP_004383325.1| - 2.8e-07 30.5 0.1 1e-06 28.7 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain GCD14 PF08704.5 gi|330506897|ref|YP_004383325.1| - 0.00013 21.5 0.0 0.00017 21.1 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.14 gi|330506897|ref|YP_004383325.1| - 0.00066 19.2 0.0 0.00096 18.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|330506897|ref|YP_004383325.1| - 0.0071 15.7 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|330506897|ref|YP_004383325.1| - 0.0076 17.0 0.0 0.025 15.4 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|330506897|ref|YP_004383325.1| - 0.013 14.6 0.0 0.027 13.5 0.0 1.5 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_12 PF08242.7 gi|330506897|ref|YP_004383325.1| - 0.027 14.9 0.0 0.24 11.8 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_29 PF03141.11 gi|330506897|ref|YP_004383325.1| - 0.048 11.9 0.0 0.06 11.6 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase UPF0020 PF01170.13 gi|330506897|ref|YP_004383325.1| - 0.051 13.1 0.0 0.13 11.7 0.0 1.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|330506897|ref|YP_004383325.1| - 0.054 13.2 0.0 0.17 11.6 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|330506897|ref|YP_004383325.1| - 0.065 12.5 0.0 0.093 12.0 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Zip PF02535.17 gi|330506898|ref|YP_004383326.1| - 2.7e-23 82.4 22.3 2.9e-20 72.4 4.1 2.2 1 1 1 2 2 2 2 ZIP Zinc transporter E1-E2_ATPase PF00122.15 gi|330506898|ref|YP_004383326.1| - 0.029 13.4 0.9 0.24 10.3 0.6 2.3 1 1 0 1 1 1 0 E1-E2 ATPase MG1 PF11974.3 gi|330506898|ref|YP_004383326.1| - 0.079 13.5 0.0 0.12 12.9 0.0 1.3 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain DUF2202 PF09968.4 gi|330506899|ref|YP_004383327.1| - 4.8e-58 195.3 0.9 5.7e-58 195.1 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Cation_efflux PF01545.16 gi|330506900|ref|YP_004383328.1| - 4.2e-47 160.5 8.5 5.8e-47 160.1 5.9 1.1 1 0 0 1 1 1 1 Cation efflux family Nitro_FeMo-Co PF02579.12 gi|330506900|ref|YP_004383328.1| - 4.2e-12 45.9 0.0 6.6e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.12 gi|330506901|ref|YP_004383329.1| - 8.8e-22 77.0 0.0 1.4e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Semialdhyde_dhC PF02774.13 gi|330506901|ref|YP_004383329.1| - 0.028 14.3 0.5 0.035 13.9 0.3 1.1 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, dimerisation domain NIF3 PF01784.13 gi|330506901|ref|YP_004383329.1| - 0.096 12.2 0.1 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) API5 PF05918.6 gi|330506901|ref|YP_004383329.1| - 5.3 5.4 10.7 5.6 5.3 7.5 1.1 1 0 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) Nitro_FeMo-Co PF02579.12 gi|330506902|ref|YP_004383330.1| - 1.4e-22 79.5 0.0 1.8e-22 79.2 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor CbiA PF01656.18 gi|330506903|ref|YP_004383331.1| - 4.3e-25 88.2 0.0 5.9e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_6 PF12837.2 gi|330506903|ref|YP_004383331.1| - 2.2e-14 52.6 10.7 6.4e-07 28.9 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|330506903|ref|YP_004383331.1| - 2.9e-13 48.7 12.1 9.6e-07 28.1 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330506903|ref|YP_004383331.1| - 6.8e-09 35.4 5.7 1.5e-08 34.3 3.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330506903|ref|YP_004383331.1| - 1.1e-08 35.2 10.4 0.00067 19.9 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330506903|ref|YP_004383331.1| - 4.3e-08 32.6 12.2 0.00017 21.2 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330506903|ref|YP_004383331.1| - 3.7e-07 29.9 9.0 8e-07 28.8 6.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330506903|ref|YP_004383331.1| - 9.8e-07 28.7 5.3 0.006 16.5 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain ParA PF10609.4 gi|330506903|ref|YP_004383331.1| - 3.8e-05 23.4 1.7 5e-05 23.1 0.0 2.0 2 0 0 2 2 2 1 ParA/MinD ATPase like Fer4_4 PF12800.2 gi|330506903|ref|YP_004383331.1| - 7e-05 22.8 12.5 0.053 13.8 1.4 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330506903|ref|YP_004383331.1| - 7.4e-05 22.9 15.5 0.00022 21.4 8.9 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330506903|ref|YP_004383331.1| - 0.00012 22.3 19.0 0.015 15.7 4.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330506903|ref|YP_004383331.1| - 0.00019 22.1 12.3 0.013 16.2 2.0 2.5 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|330506903|ref|YP_004383331.1| - 0.00021 21.5 9.5 0.14 12.5 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330506903|ref|YP_004383331.1| - 0.00028 21.4 5.7 0.24 12.0 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain MipZ PF09140.6 gi|330506903|ref|YP_004383331.1| - 0.00096 18.3 0.0 0.024 13.7 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.13 gi|330506903|ref|YP_004383331.1| - 0.0018 17.5 0.2 0.43 9.7 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|330506903|ref|YP_004383331.1| - 0.008 15.2 0.5 0.032 13.2 0.5 1.9 3 0 0 3 3 3 1 Anion-transporting ATPase AAA_19 PF13245.1 gi|330506903|ref|YP_004383331.1| - 0.0081 15.8 0.1 0.28 10.9 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain Fer4_11 PF13247.1 gi|330506903|ref|YP_004383331.1| - 0.026 14.3 4.0 0.06 13.2 2.8 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain PhoH PF02562.11 gi|330506903|ref|YP_004383331.1| - 0.078 12.2 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein Fer4_18 PF13746.1 gi|330506903|ref|YP_004383331.1| - 0.14 12.6 11.9 2.2 8.7 1.4 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|330506903|ref|YP_004383331.1| - 0.88 10.0 13.1 4.6 7.7 1.6 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain CbiA PF01656.18 gi|330506904|ref|YP_004383332.1| - 1.6e-29 102.7 0.0 2e-29 102.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|330506904|ref|YP_004383332.1| - 8.4e-12 44.1 13.0 7.1e-07 28.5 1.7 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330506904|ref|YP_004383332.1| - 5.2e-10 39.5 3.0 0.0005 20.3 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330506904|ref|YP_004383332.1| - 1.5e-08 34.1 11.6 0.00014 21.5 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330506904|ref|YP_004383332.1| - 5.7e-08 32.2 15.8 4.8e-05 23.0 2.2 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330506904|ref|YP_004383332.1| - 9.4e-08 32.2 5.7 0.0038 17.4 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330506904|ref|YP_004383332.1| - 1.9e-07 31.7 2.7 0.015 16.0 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|330506904|ref|YP_004383332.1| - 5.4e-07 29.3 12.9 2.5e-06 27.2 8.9 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330506904|ref|YP_004383332.1| - 2.3e-06 27.2 12.2 3.4e-05 23.5 9.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330506904|ref|YP_004383332.1| - 3.6e-05 23.7 8.8 0.012 15.6 8.5 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330506904|ref|YP_004383332.1| - 0.00016 22.1 7.1 0.057 13.9 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|330506904|ref|YP_004383332.1| - 0.00059 19.9 16.9 0.034 14.4 2.6 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain AAA_25 PF13481.1 gi|330506904|ref|YP_004383332.1| - 0.0025 17.2 0.0 0.042 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain GTP_EFTU PF00009.22 gi|330506904|ref|YP_004383332.1| - 0.0044 16.4 0.4 0.0093 15.4 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_19 PF13245.1 gi|330506904|ref|YP_004383332.1| - 0.011 15.5 0.5 0.11 12.3 0.2 2.3 2 0 0 2 2 2 0 Part of AAA domain Fer4_13 PF13370.1 gi|330506904|ref|YP_004383332.1| - 0.012 15.9 12.3 0.8 10.1 3.1 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain ArsA_ATPase PF02374.10 gi|330506904|ref|YP_004383332.1| - 0.014 14.4 1.1 0.047 12.7 0.9 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase Fer4_17 PF13534.1 gi|330506904|ref|YP_004383332.1| - 0.023 15.0 12.0 0.26 11.6 1.5 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain AAA_30 PF13604.1 gi|330506904|ref|YP_004383332.1| - 0.03 13.8 0.8 0.41 10.2 0.4 2.2 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|330506904|ref|YP_004383332.1| - 0.034 13.5 0.1 1.4 8.3 0.1 2.8 4 0 0 4 4 3 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|330506904|ref|YP_004383332.1| - 0.051 14.3 1.3 0.17 12.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|330506904|ref|YP_004383332.1| - 0.053 13.5 0.0 0.14 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain Fer4_3 PF12798.2 gi|330506904|ref|YP_004383332.1| - 0.063 13.8 20.5 0.11 13.0 4.2 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain AAA_24 PF13479.1 gi|330506904|ref|YP_004383332.1| - 0.086 12.4 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|330506904|ref|YP_004383332.1| - 0.094 12.8 0.0 0.56 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|330506904|ref|YP_004383332.1| - 0.11 13.0 0.0 0.26 11.7 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein IF3_N PF05198.11 gi|330506904|ref|YP_004383332.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain DUF2075 PF09848.4 gi|330506904|ref|YP_004383332.1| - 0.12 11.2 0.0 0.29 10.0 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ParA PF10609.4 gi|330506904|ref|YP_004383332.1| - 0.17 11.7 0.6 0.48 10.3 0.2 2.0 1 1 1 2 2 2 0 ParA/MinD ATPase like Fer4_18 PF13746.1 gi|330506904|ref|YP_004383332.1| - 1.2 9.6 15.2 2.9 8.3 2.2 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.16 gi|330506906|ref|YP_004383334.1| - 7.9e-13 48.9 0.0 1.3e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|330506906|ref|YP_004383334.1| - 0.045 13.7 0.0 0.086 12.8 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF1272 PF06906.6 gi|330506906|ref|YP_004383334.1| - 0.052 13.4 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) Lactamase_B PF00753.22 gi|330506907|ref|YP_004383335.1| - 9.3e-17 61.3 1.5 1.4e-16 60.7 1.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|330506907|ref|YP_004383335.1| - 1.3e-06 28.0 0.1 2.4e-06 27.2 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|330506907|ref|YP_004383335.1| - 0.056 13.1 0.1 0.089 12.5 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF2202 PF09968.4 gi|330506908|ref|YP_004383336.1| - 1.1e-47 161.6 1.2 1.5e-47 161.2 0.8 1.2 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DOMON PF03351.12 gi|330506908|ref|YP_004383336.1| - 8.1e-26 90.3 0.0 1.3e-25 89.7 0.0 1.3 1 0 0 1 1 1 1 DOMON domain HTH_IclR PF09339.5 gi|330506909|ref|YP_004383337.1| - 7.5e-05 22.2 0.1 0.00016 21.1 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|330506909|ref|YP_004383337.1| - 0.00028 20.4 0.2 0.0011 18.5 0.0 2.1 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|330506909|ref|YP_004383337.1| - 0.00058 19.4 0.1 0.0022 17.6 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_36 PF13730.1 gi|330506909|ref|YP_004383337.1| - 0.00091 19.3 0.0 0.0019 18.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|330506909|ref|YP_004383337.1| - 0.00093 18.6 0.2 0.0034 16.8 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_24 PF13412.1 gi|330506909|ref|YP_004383337.1| - 0.0021 17.4 0.2 0.0067 15.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|330506909|ref|YP_004383337.1| - 0.0033 16.8 0.1 0.008 15.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|330506909|ref|YP_004383337.1| - 0.0054 16.4 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|330506909|ref|YP_004383337.1| - 0.022 14.4 0.1 0.07 12.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|330506909|ref|YP_004383337.1| - 0.076 13.1 0.6 1.6 8.9 0.0 2.3 1 1 1 2 2 2 0 Winged helix-turn helix HTH_20 PF12840.2 gi|330506909|ref|YP_004383337.1| - 0.12 12.2 0.3 0.37 10.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HSP20 PF00011.16 gi|330506910|ref|YP_004383338.1| - 1.1e-14 54.1 0.3 1.4e-14 53.7 0.2 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|330506910|ref|YP_004383338.1| - 0.0015 19.0 0.0 0.0038 17.7 0.0 1.7 2 0 0 2 2 2 1 CS domain PIH1 PF08190.7 gi|330506910|ref|YP_004383338.1| - 0.0033 16.9 0.0 0.0034 16.8 0.0 1.2 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 MFS_1 PF07690.11 gi|330506911|ref|YP_004383339.1| - 6.8e-39 133.5 48.4 6.8e-20 71.0 10.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|330506911|ref|YP_004383339.1| - 0.17 9.9 19.7 3 5.8 13.7 2.4 1 1 0 1 1 1 0 Transmembrane secretion effector YcfA PF07927.7 gi|330506912|ref|YP_004383340.1| - 0.011 15.5 0.3 0.014 15.2 0.2 1.1 1 0 0 1 1 1 0 YcfA-like protein UPF0150 PF03681.10 gi|330506913|ref|YP_004383341.1| - 9.4e-08 31.5 0.1 1.4e-07 31.0 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|330506913|ref|YP_004383341.1| - 0.013 15.5 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) YcfA PF07927.7 gi|330506915|ref|YP_004383343.1| - 0.067 13.1 0.2 0.11 12.4 0.2 1.4 1 0 0 1 1 1 0 YcfA-like protein UvrD-helicase PF00580.16 gi|330506916|ref|YP_004383344.1| - 8.7e-23 81.0 0.0 1.4e-12 47.5 0.0 3.4 2 1 0 3 3 3 3 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.13 gi|330506916|ref|YP_004383344.1| - 6.2e-11 42.2 0.0 0.00017 21.1 0.0 3.3 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase UvrD_C PF13361.1 gi|330506916|ref|YP_004383344.1| - 2.2e-09 37.2 0.0 3.3e-09 36.6 0.0 1.3 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|330506916|ref|YP_004383344.1| - 6.5e-08 32.6 0.0 1.4e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|330506916|ref|YP_004383344.1| - 3.7e-06 26.5 0.0 1.1e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain RasGAP PF00616.14 gi|330506916|ref|YP_004383344.1| - 0.0091 15.6 1.3 0.054 13.1 0.2 2.3 2 0 0 2 2 2 1 GTPase-activator protein for Ras-like GTPase Herpes_ori_bp PF02399.10 gi|330506916|ref|YP_004383344.1| - 0.06 11.3 0.0 0.12 10.2 0.0 1.4 1 0 0 1 1 1 0 Origin of replication binding protein AAA_12 PF13087.1 gi|330506916|ref|YP_004383344.1| - 0.06 12.7 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|330506916|ref|YP_004383344.1| - 0.13 12.4 0.3 4.6 7.3 0.0 3.1 4 0 0 4 4 4 0 AAA domain AAA_15 PF13175.1 gi|330506917|ref|YP_004383345.1| - 3.2e-28 98.9 1.6 8.9e-16 57.9 0.0 2.3 2 1 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.1 gi|330506917|ref|YP_004383345.1| - 1.2e-20 74.6 10.7 1.4e-19 71.2 4.8 2.8 2 1 0 2 2 2 1 AAA domain DUF2813 PF11398.3 gi|330506917|ref|YP_004383345.1| - 1.5e-15 57.2 1.4 4.4e-09 35.8 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_23 PF13476.1 gi|330506917|ref|YP_004383345.1| - 7e-14 52.6 0.2 1.4e-13 51.6 0.1 1.5 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330506917|ref|YP_004383345.1| - 9.4e-10 38.0 0.2 8.5e-09 34.9 0.0 2.2 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|330506917|ref|YP_004383345.1| - 0.0081 15.6 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|330506917|ref|YP_004383345.1| - 0.009 15.2 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|330506917|ref|YP_004383345.1| - 0.034 14.4 0.0 31 4.8 0.0 3.4 3 0 0 3 3 3 0 AAA domain Methylase_S PF01420.14 gi|330506918|ref|YP_004383346.1| - 2.4e-26 92.7 0.0 7e-13 48.8 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.11 gi|330506919|ref|YP_004383347.1| - 3.4e-96 321.9 0.0 4.4e-96 321.6 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|330506919|ref|YP_004383347.1| - 2.3e-25 89.6 0.0 5.4e-25 88.3 0.0 1.7 1 0 0 1 1 1 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|330506919|ref|YP_004383347.1| - 5.8e-08 32.7 0.0 1.2e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|330506919|ref|YP_004383347.1| - 1e-05 25.1 0.0 1.7e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|330506919|ref|YP_004383347.1| - 0.0022 17.5 0.0 0.0047 16.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DUF365 PF04033.7 gi|330506919|ref|YP_004383347.1| - 0.083 12.8 0.1 0.21 11.6 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF365) Radical_SAM PF04055.16 gi|330506920|ref|YP_004383348.1| - 2.5e-19 70.0 0.0 1.1e-18 67.9 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|330506920|ref|YP_004383348.1| - 2.5e-14 53.1 0.2 5.1e-14 52.1 0.1 1.5 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.16 gi|330506921|ref|YP_004383349.1| - 5.3e-15 55.9 1.0 2.5e-14 53.7 0.5 2.0 1 1 1 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|330506921|ref|YP_004383349.1| - 0.00019 21.2 0.0 0.00065 19.5 0.0 1.8 2 0 0 2 2 2 1 B12 binding domain DUF2240 PF09999.4 gi|330506923|ref|YP_004383351.1| - 1.3e-41 141.4 0.3 1.5e-41 141.2 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) HipA_N PF07805.7 gi|330506923|ref|YP_004383351.1| - 0.026 14.7 0.0 0.04 14.1 0.0 1.3 1 0 0 1 1 1 0 HipA-like N-terminal domain NPCBM_assoc PF10633.4 gi|330506924|ref|YP_004383352.1| - 0.0035 17.3 0.2 8.7 6.4 0.0 3.6 2 1 1 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase Peptidase_C25 PF01364.13 gi|330506925|ref|YP_004383353.1| - 2.5e-27 95.8 0.2 3.8e-27 95.2 0.1 1.2 1 0 0 1 1 1 1 Peptidase family C25 CW_binding_2 PF04122.7 gi|330506925|ref|YP_004383353.1| - 1e-05 25.6 0.1 0.00011 22.3 0.0 2.7 3 0 0 3 3 3 1 Putative cell wall binding repeat 2 DUF187 PF02638.10 gi|330506925|ref|YP_004383353.1| - 0.0001 21.2 0.0 0.00019 20.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase like GH101 DUF11 PF01345.13 gi|330506925|ref|YP_004383353.1| - 0.00021 21.2 0.0 0.00067 19.6 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|330506925|ref|YP_004383353.1| - 0.0036 17.3 0.0 1.9 8.5 0.0 3.3 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Glycos_transf_2 PF00535.21 gi|330506926|ref|YP_004383354.1| - 7.7e-18 64.7 0.0 1.2e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330506926|ref|YP_004383354.1| - 1.3e-08 34.9 0.0 1.8e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|330506926|ref|YP_004383354.1| - 0.0021 18.3 0.0 0.0039 17.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 DUF4191 PF13829.1 gi|330506926|ref|YP_004383354.1| - 0.049 12.7 1.4 0.079 12.0 1.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) NTP_transf_3 PF12804.2 gi|330506926|ref|YP_004383354.1| - 0.065 13.3 0.0 0.094 12.7 0.0 1.2 1 0 0 1 1 1 0 MobA-like NTP transferase domain PGM_PMM_I PF02878.11 gi|330506927|ref|YP_004383355.1| - 4.9e-28 97.3 0.0 1e-27 96.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|330506927|ref|YP_004383355.1| - 3.1e-18 66.0 0.0 6.2e-18 65.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|330506927|ref|YP_004383355.1| - 1.3e-16 60.6 0.0 2e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|330506927|ref|YP_004383355.1| - 5.1e-10 39.2 0.1 1.3e-09 37.8 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Alba PF01918.16 gi|330506928|ref|YP_004383356.1| - 2.9e-16 58.8 0.1 3.7e-16 58.4 0.1 1.2 1 0 0 1 1 1 1 Alba FtsJ PF01728.14 gi|330506929|ref|YP_004383357.1| - 3.1e-57 193.4 0.0 3.8e-57 193.1 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|330506929|ref|YP_004383357.1| - 9e-06 25.3 0.4 1.6e-05 24.5 0.3 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_18 PF12847.2 gi|330506929|ref|YP_004383357.1| - 1.3e-05 25.7 0.5 0.00056 20.4 0.3 2.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330506929|ref|YP_004383357.1| - 8.7e-05 22.2 0.0 0.00039 20.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330506929|ref|YP_004383357.1| - 0.00013 21.6 0.2 0.68 9.5 0.0 2.8 2 1 1 3 3 3 2 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330506929|ref|YP_004383357.1| - 0.006 16.6 0.2 0.064 13.2 0.2 2.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330506929|ref|YP_004383357.1| - 0.037 14.3 0.2 0.89 9.9 0.0 2.6 1 1 1 2 2 2 0 Methyltransferase domain C6 PF01681.12 gi|330506930|ref|YP_004383358.1| - 0.81 9.7 5.0 0.33 11.0 1.3 1.8 1 1 1 2 2 2 0 C6 domain PAT1 PF09770.4 gi|330506930|ref|YP_004383358.1| - 3.7 5.6 12.8 4.4 5.4 8.9 1.0 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 DDE_Tnp_1 PF01609.16 gi|330506931|ref|YP_004383359.1| - 8.6e-07 28.7 0.8 3.1e-06 26.9 0.5 1.8 1 1 0 1 1 1 1 Transposase DDE domain Transglut_core PF01841.14 gi|330506934|ref|YP_004383362.1| - 2.1e-06 27.9 0.0 2.5e-05 24.4 0.0 2.2 1 1 1 2 2 2 1 Transglutaminase-like superfamily Transglut_core PF01841.14 gi|330506935|ref|YP_004383363.1| - 1.9e-07 31.2 0.0 4.1e-06 26.9 0.0 2.2 1 1 1 2 2 2 1 Transglutaminase-like superfamily Inhibitor_I42 PF09394.5 gi|330506936|ref|YP_004383364.1| - 4.1e-16 59.0 1.2 5.5e-16 58.6 0.1 1.7 2 1 0 2 2 2 1 Chagasin family peptidase inhibitor I42 Nuc_recep-AF1 PF11825.3 gi|330506936|ref|YP_004383364.1| - 0.036 13.9 0.1 0.049 13.5 0.1 1.2 1 0 0 1 1 1 0 Nuclear/hormone receptor activator site AF-1 Transposase_20 PF02371.11 gi|330506937|ref|YP_004383365.1| - 2.9e-26 91.3 0.2 5.3e-26 90.5 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|330506937|ref|YP_004383365.1| - 1.7e-24 86.1 0.0 2.9e-24 85.3 0.0 1.4 1 0 0 1 1 1 1 Transposase Lectin_N PF03954.9 gi|330506937|ref|YP_004383365.1| - 0.1 11.9 0.0 1.3 8.4 0.0 2.2 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain HR1 PF02185.11 gi|330506939|ref|YP_004383367.1| - 0.064 12.9 0.5 0.86 9.3 0.0 2.1 2 0 0 2 2 2 0 Hr1 repeat Peripla_BP_2 PF01497.13 gi|330506940|ref|YP_004383368.1| - 3.3e-25 88.6 0.0 4.4e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein PAZ_siRNAbind PF12212.3 gi|330506940|ref|YP_004383368.1| - 0.086 12.4 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Piwi/Argonaute/Zwille siRNA-binding domain Peripla_BP_2 PF01497.13 gi|330506941|ref|YP_004383369.1| - 2.7e-29 101.9 0.0 3.5e-29 101.6 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|330506942|ref|YP_004383370.1| - 8.3e-34 116.7 0.0 1.1e-33 116.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|330506943|ref|YP_004383371.1| - 3.1e-08 33.0 0.0 3.9e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|330506944|ref|YP_004383372.1| - 2.5e-93 312.3 37.7 3.2e-93 311.9 26.1 1.1 1 0 0 1 1 1 1 FecCD transport family LTD PF00932.14 gi|330506945|ref|YP_004383373.1| - 3.5e-15 56.0 0.1 5.9e-15 55.3 0.1 1.4 1 1 0 1 1 1 1 Lamin Tail Domain CbiK PF06180.6 gi|330506946|ref|YP_004383374.1| - 1.7e-73 246.9 0.0 3.2e-73 246.0 0.0 1.4 1 1 0 1 1 1 1 Cobalt chelatase (CbiK) CbiX PF01903.12 gi|330506946|ref|YP_004383374.1| - 8.1e-07 29.1 0.2 0.00026 21.0 0.0 3.0 2 1 0 2 2 2 2 CbiX ZapA PF05164.8 gi|330506947|ref|YP_004383375.1| - 0.033 14.1 0.2 0.043 13.7 0.1 1.1 1 0 0 1 1 1 0 Cell division protein ZapA Metal_resist PF13801.1 gi|330506947|ref|YP_004383375.1| - 0.064 13.2 0.6 0.099 12.6 0.4 1.4 1 1 0 1 1 1 0 Heavy-metal resistance DUF4140 PF13600.1 gi|330506947|ref|YP_004383375.1| - 0.14 12.6 1.0 0.18 12.2 0.7 1.1 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF134 PF02001.11 gi|330506948|ref|YP_004383376.1| - 1.3e-18 66.8 0.1 1.9e-18 66.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|330506948|ref|YP_004383376.1| - 3.2e-05 23.2 0.1 8.9e-05 21.8 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|330506948|ref|YP_004383376.1| - 0.072 12.6 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain ParA PF10609.4 gi|330506950|ref|YP_004383378.1| - 2.6e-34 116.9 0.1 4.7e-34 116.1 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|330506950|ref|YP_004383378.1| - 3.4e-20 72.2 0.0 5.2e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|330506950|ref|YP_004383378.1| - 1e-06 28.0 0.0 3e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|330506950|ref|YP_004383378.1| - 1.4e-06 28.3 0.0 6.9e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|330506950|ref|YP_004383378.1| - 1.5e-05 24.3 0.1 0.0011 18.2 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|330506950|ref|YP_004383378.1| - 0.00036 19.6 1.4 0.0021 17.1 0.5 2.4 3 0 0 3 3 3 1 Anion-transporting ATPase APS_kinase PF01583.15 gi|330506950|ref|YP_004383378.1| - 0.00064 19.4 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase ArgK PF03308.11 gi|330506950|ref|YP_004383378.1| - 0.0069 15.1 0.1 0.012 14.4 0.0 1.3 1 0 0 1 1 1 1 ArgK protein VirC1 PF07015.6 gi|330506950|ref|YP_004383378.1| - 0.012 14.7 0.0 0.027 13.5 0.0 1.5 2 0 0 2 2 2 0 VirC1 protein AAA_25 PF13481.1 gi|330506950|ref|YP_004383378.1| - 0.019 14.3 0.0 0.04 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|330506950|ref|YP_004383378.1| - 0.025 13.9 0.2 0.21 10.9 0.1 2.0 2 0 0 2 2 2 0 YhjQ protein Desulfoferrod_N PF06397.7 gi|330506950|ref|YP_004383378.1| - 0.036 13.4 0.4 0.078 12.3 0.3 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain MobB PF03205.9 gi|330506950|ref|YP_004383378.1| - 0.057 13.1 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PG_binding_2 PF08823.6 gi|330506950|ref|YP_004383378.1| - 0.078 13.0 0.1 15 5.7 0.0 2.7 2 1 1 3 3 2 0 Putative peptidoglycan binding domain AAA_30 PF13604.1 gi|330506950|ref|YP_004383378.1| - 0.084 12.4 0.1 0.14 11.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|330506950|ref|YP_004383378.1| - 0.095 12.4 0.2 0.21 11.2 0.1 1.6 1 0 0 1 1 1 0 NTPase AAA_26 PF13500.1 gi|330506950|ref|YP_004383378.1| - 0.11 12.0 0.2 3.2 7.3 0.1 2.2 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|330506950|ref|YP_004383378.1| - 0.13 11.3 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 zinc_ribbon_2 PF13240.1 gi|330506950|ref|YP_004383378.1| - 0.15 11.5 0.3 0.15 11.5 0.2 1.8 2 0 0 2 2 2 0 zinc-ribbon domain AAA_17 PF13207.1 gi|330506950|ref|YP_004383378.1| - 0.17 12.7 0.4 0.41 11.4 0.2 1.7 2 0 0 2 2 1 0 AAA domain Y1_Tnp PF01797.11 gi|330506951|ref|YP_004383379.1| - 1.1e-25 89.7 0.0 1.2e-25 89.6 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like Radical_SAM PF04055.16 gi|330506954|ref|YP_004383382.1| - 4.1e-31 108.4 0.1 1.6e-30 106.4 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|330506954|ref|YP_004383382.1| - 1.5e-05 24.8 0.4 0.0014 18.4 0.0 3.5 3 2 0 3 3 3 1 B12 binding domain AP_endonuc_2 PF01261.19 gi|330506954|ref|YP_004383382.1| - 0.0039 16.4 0.0 0.011 15.0 0.0 1.8 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel MCR_alpha_N PF02745.10 gi|330506955|ref|YP_004383383.1| - 1.8e-134 447.0 0.2 2.3e-134 446.6 0.1 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|330506955|ref|YP_004383383.1| - 1.1e-65 219.3 2.2 2.1e-65 218.4 1.5 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_gamma PF02240.11 gi|330506956|ref|YP_004383384.1| - 1.2e-98 329.1 0.0 1.4e-98 329.0 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit LdpA_C PF12617.3 gi|330506956|ref|YP_004383384.1| - 0.03 13.5 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 Iron-Sulfur binding protein C terminal MCR_D PF02505.9 gi|330506957|ref|YP_004383385.1| - 2.4e-45 153.8 0.0 2.9e-45 153.5 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|330506958|ref|YP_004383386.1| - 1.1e-124 414.7 8.9 1.4e-124 414.3 6.2 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|330506958|ref|YP_004383386.1| - 2.6e-68 229.0 2.1 2.6e-68 229.0 1.4 1.9 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF1810 PF08837.6 gi|330506958|ref|YP_004383386.1| - 0.024 14.2 0.0 0.089 12.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1810) Topoisom_bac PF01131.15 gi|330506959|ref|YP_004383387.1| - 2.4e-115 385.5 0.0 3e-115 385.3 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|330506959|ref|YP_004383387.1| - 1.1e-15 57.3 0.0 4.6e-15 55.4 0.0 2.1 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|330506959|ref|YP_004383387.1| - 1.2e-15 56.7 0.9 1.2e-15 56.7 0.6 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.1 gi|330506959|ref|YP_004383387.1| - 4.1e-11 42.8 3.5 1.9e-10 40.7 2.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|330506959|ref|YP_004383387.1| - 0.00084 19.3 0.1 0.0024 17.8 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) HHH PF00633.18 gi|330506959|ref|YP_004383387.1| - 0.014 15.0 0.0 0.035 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|330506959|ref|YP_004383387.1| - 0.015 15.2 0.0 0.048 13.5 0.0 1.8 1 0 0 1 1 1 0 Pathogenicity locus IMS_HHH PF11798.3 gi|330506959|ref|YP_004383387.1| - 0.019 14.9 0.1 0.061 13.3 0.0 2.0 1 0 0 1 1 1 0 IMS family HHH motif eRF1_1 PF03463.10 gi|330506960|ref|YP_004383388.1| - 1.3e-29 102.4 0.0 2.1e-29 101.7 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|330506960|ref|YP_004383388.1| - 7.9e-22 77.6 0.2 3.2e-21 75.7 0.1 2.0 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|330506960|ref|YP_004383388.1| - 1e-17 64.7 0.0 1.7e-17 64.0 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 ATP_bind_3 PF01171.15 gi|330506961|ref|YP_004383389.1| - 0.00044 19.8 0.0 0.00078 18.9 0.0 1.4 1 1 0 1 1 1 1 PP-loop family AsnC_trans_reg PF01037.16 gi|330506962|ref|YP_004383390.1| - 3.8e-15 55.3 0.2 9.4e-15 54.0 0.0 1.7 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|330506962|ref|YP_004383390.1| - 7e-11 41.3 0.1 1.5e-10 40.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|330506962|ref|YP_004383390.1| - 1.1e-06 28.0 0.0 7.5e-06 25.3 0.0 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|330506962|ref|YP_004383390.1| - 2.5e-06 27.2 0.0 5.1e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|330506962|ref|YP_004383390.1| - 1.3e-05 24.9 0.0 2.6e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|330506962|ref|YP_004383390.1| - 0.00013 21.6 0.0 0.00028 20.5 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|330506962|ref|YP_004383390.1| - 0.00056 19.5 0.0 0.0013 18.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|330506962|ref|YP_004383390.1| - 0.0014 18.0 0.1 0.027 14.0 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|330506962|ref|YP_004383390.1| - 0.0065 16.1 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|330506962|ref|YP_004383390.1| - 0.014 15.4 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r3 PF04539.11 gi|330506962|ref|YP_004383390.1| - 0.023 14.5 1.9 0.12 12.2 0.4 2.2 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_27 PF13463.1 gi|330506962|ref|YP_004383390.1| - 0.032 14.5 0.1 0.19 12.0 0.0 2.2 2 1 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|330506962|ref|YP_004383390.1| - 0.042 13.5 0.1 0.11 12.1 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|330506962|ref|YP_004383390.1| - 0.042 13.3 0.0 0.087 12.3 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|330506962|ref|YP_004383390.1| - 0.042 13.4 0.1 0.089 12.4 0.1 1.6 1 0 0 1 1 1 0 HTH domain DUF4423 PF14394.1 gi|330506962|ref|YP_004383390.1| - 0.052 13.0 0.1 0.091 12.2 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_29 PF13551.1 gi|330506962|ref|YP_004383390.1| - 0.054 13.6 0.0 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix P2 PF07194.6 gi|330506962|ref|YP_004383390.1| - 0.059 13.2 0.4 1.7 8.5 0.0 2.7 2 1 1 3 3 3 0 P2 response regulator binding domain DUF2250 PF10007.4 gi|330506962|ref|YP_004383390.1| - 0.091 12.6 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Stk19 PF10494.4 gi|330506962|ref|YP_004383390.1| - 0.11 11.9 0.1 0.11 11.8 0.0 1.3 1 1 0 1 1 1 0 Serine-threonine protein kinase 19 Dimerisation PF08100.6 gi|330506962|ref|YP_004383390.1| - 0.13 12.1 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 Dimerisation domain HTH_12 PF08461.5 gi|330506962|ref|YP_004383390.1| - 0.19 11.4 1.9 0.29 10.8 0.5 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Aminotran_1_2 PF00155.16 gi|330506963|ref|YP_004383391.1| - 2.8e-65 220.6 0.0 3.2e-65 220.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|330506963|ref|YP_004383391.1| - 0.00025 20.1 0.1 0.00053 19.1 0.1 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|330506963|ref|YP_004383391.1| - 0.018 13.3 0.1 0.043 12.0 0.0 1.5 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|330506963|ref|YP_004383391.1| - 0.019 13.7 0.0 0.035 12.8 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class-V Fork_head_N PF08430.7 gi|330506963|ref|YP_004383391.1| - 0.037 14.4 0.3 0.058 13.7 0.2 1.2 1 0 0 1 1 1 0 Forkhead N-terminal region DUF217 PF02697.9 gi|330506963|ref|YP_004383391.1| - 0.12 12.6 0.2 0.31 11.3 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 CDP-OH_P_transf PF01066.16 gi|330506964|ref|YP_004383392.1| - 6.6e-16 58.4 10.6 1.6e-15 57.2 7.3 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase PIN PF01850.16 gi|330506965|ref|YP_004383393.1| - 4.1e-17 62.6 0.2 4.7e-17 62.4 0.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|330506965|ref|YP_004383393.1| - 0.031 14.9 0.1 0.095 13.3 0.1 1.7 1 1 0 1 1 1 0 PIN domain Borrelia_P13 PF05628.7 gi|330506965|ref|YP_004383393.1| - 0.11 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Borrelia membrane protein P13 DUF2281 PF10047.4 gi|330506966|ref|YP_004383394.1| - 2.8e-16 59.5 0.2 3e-16 59.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2281) DUF2274 PF10038.4 gi|330506966|ref|YP_004383394.1| - 0.067 13.3 0.0 0.17 11.9 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2274) POR PF01558.13 gi|330506967|ref|YP_004383395.1| - 6.2e-39 133.6 0.0 9.5e-39 133.0 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|330506967|ref|YP_004383395.1| - 6e-23 81.0 0.0 1e-22 80.3 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|330506968|ref|YP_004383396.1| - 2.8e-58 197.1 0.0 3.6e-58 196.7 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|330506968|ref|YP_004383396.1| - 1.3e-06 28.3 0.0 2.4e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|330506968|ref|YP_004383396.1| - 0.00023 20.6 0.2 0.00042 19.8 0.1 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transket_pyr PF02779.19 gi|330506968|ref|YP_004383396.1| - 0.11 11.9 0.1 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Transketolase, pyrimidine binding domain AMP-binding PF00501.23 gi|330506969|ref|YP_004383397.1| - 5e-79 265.6 0.0 6.9e-79 265.1 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330506969|ref|YP_004383397.1| - 3.1e-19 69.7 0.5 6.6e-19 68.6 0.3 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.2 gi|330506969|ref|YP_004383397.1| - 6.3e-09 36.0 9.2 1.7e-08 34.7 6.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330506969|ref|YP_004383397.1| - 2.9e-06 26.6 15.5 0.00011 21.6 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330506969|ref|YP_004383397.1| - 8.6e-06 25.3 13.7 0.0075 16.1 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330506969|ref|YP_004383397.1| - 9.2e-06 25.3 9.8 9.2e-06 25.3 6.8 2.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330506969|ref|YP_004383397.1| - 1.4e-05 25.3 3.2 0.03 14.7 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330506969|ref|YP_004383397.1| - 6.2e-05 23.1 11.9 0.0014 18.8 8.8 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330506969|ref|YP_004383397.1| - 0.00012 21.8 9.1 0.00012 21.8 6.3 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330506969|ref|YP_004383397.1| - 0.00019 21.6 6.6 0.093 13.0 0.1 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330506969|ref|YP_004383397.1| - 0.00029 20.9 10.3 0.1 13.0 1.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330506969|ref|YP_004383397.1| - 0.00043 20.9 10.2 0.057 14.1 7.5 2.7 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|330506969|ref|YP_004383397.1| - 0.0075 16.6 10.5 0.093 13.1 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|330506969|ref|YP_004383397.1| - 0.0081 15.9 2.7 0.0081 15.9 1.9 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330506969|ref|YP_004383397.1| - 0.014 15.4 14.7 0.047 13.7 8.8 2.6 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330506969|ref|YP_004383397.1| - 0.067 13.7 12.6 0.21 12.1 0.4 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|330506969|ref|YP_004383397.1| - 0.94 10.1 19.9 2.9 8.6 3.6 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Cupin_2 PF07883.6 gi|330506970|ref|YP_004383398.1| - 6.7e-16 57.5 0.1 1.8e-15 56.1 0.1 1.8 1 1 0 1 1 1 1 Cupin domain HTH_31 PF13560.1 gi|330506970|ref|YP_004383398.1| - 2.5e-07 30.8 0.0 3.6e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|330506970|ref|YP_004383398.1| - 1.6e-06 28.0 0.0 2.4e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|330506970|ref|YP_004383398.1| - 0.0008 19.2 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix MannoseP_isomer PF01050.13 gi|330506970|ref|YP_004383398.1| - 0.00094 18.8 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|330506970|ref|YP_004383398.1| - 0.0022 17.7 0.0 0.0037 16.9 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|330506970|ref|YP_004383398.1| - 0.0044 16.3 0.0 0.0074 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.7 gi|330506970|ref|YP_004383398.1| - 0.049 13.1 0.0 0.098 12.2 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Asp_Arg_Hydrox PF05118.10 gi|330506970|ref|YP_004383398.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase zinc_ribbon_5 PF13719.1 gi|330506971|ref|YP_004383399.1| - 0.015 14.8 0.3 0.032 13.8 0.0 1.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|330506971|ref|YP_004383399.1| - 0.038 13.6 0.3 0.088 12.5 0.0 1.7 2 0 0 2 2 2 0 zinc-ribbon domain DUF4065 PF13274.1 gi|330506976|ref|YP_004383404.1| - 0.023 15.3 0.0 0.044 14.4 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4065) AAA_21 PF13304.1 gi|330506977|ref|YP_004383405.1| - 5.2e-21 75.8 0.2 8.2e-21 75.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain DUF3696 PF12476.3 gi|330506977|ref|YP_004383405.1| - 1.2e-09 37.9 0.1 2.4e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3696) AAA_15 PF13175.1 gi|330506977|ref|YP_004383405.1| - 8.2e-08 31.7 0.7 0.0024 16.9 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|330506977|ref|YP_004383405.1| - 5.9e-06 25.6 0.2 2.9e-05 23.4 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|330506977|ref|YP_004383405.1| - 0.00034 21.0 0.1 0.0013 19.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF2813 PF11398.3 gi|330506977|ref|YP_004383405.1| - 0.00039 19.6 0.0 0.0021 17.2 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_29 PF13555.1 gi|330506977|ref|YP_004383405.1| - 0.033 13.6 0.0 0.078 12.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2099 PF09872.4 gi|330506979|ref|YP_004383407.1| - 7.1e-89 297.2 0.5 8.1e-89 297.0 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) FrhB_FdhB_N PF04422.8 gi|330506979|ref|YP_004383407.1| - 0.013 15.3 0.2 0.034 13.9 0.1 1.7 2 0 0 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Histidinol_dh PF00815.15 gi|330506980|ref|YP_004383408.1| - 2.7e-165 549.9 0.1 3.2e-165 549.7 0.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DNA_ligase_A_M PF01068.16 gi|330506981|ref|YP_004383409.1| - 2.3e-53 180.5 0.0 3.7e-53 179.9 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|330506981|ref|YP_004383409.1| - 8.4e-42 142.9 0.0 4.1e-40 137.4 0.0 2.9 2 1 1 3 3 3 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|330506981|ref|YP_004383409.1| - 8.7e-16 58.1 0.0 2.3e-15 56.7 0.0 1.8 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|330506981|ref|YP_004383409.1| - 0.062 12.9 0.0 12 5.5 0.0 2.9 2 1 0 2 2 2 0 mRNA capping enzyme, catalytic domain Homoserine_dh PF00742.14 gi|330506982|ref|YP_004383410.1| - 5e-55 185.9 0.3 9.3e-55 185.0 0.1 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|330506982|ref|YP_004383410.1| - 6.8e-12 45.8 0.1 1.3e-11 44.9 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DXP_reductoisom PF02670.11 gi|330506982|ref|YP_004383410.1| - 0.01 16.3 0.8 0.024 15.1 0.1 2.1 2 1 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Saccharop_dh PF03435.13 gi|330506982|ref|YP_004383410.1| - 0.044 12.7 0.2 0.07 12.1 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Ribosomal_S11 PF00411.14 gi|330506982|ref|YP_004383410.1| - 0.15 12.2 1.3 3 8.0 0.0 2.6 3 0 0 3 3 3 0 Ribosomal protein S11 ACT PF01842.20 gi|330506983|ref|YP_004383411.1| - 4.3e-05 22.8 0.1 0.00013 21.3 0.0 1.8 1 1 0 1 1 1 1 ACT domain Saccharop_dh_N PF04455.7 gi|330506983|ref|YP_004383411.1| - 0.024 14.7 0.1 0.057 13.5 0.1 1.7 1 1 0 1 1 1 0 LOR/SDH bifunctional enzyme conserved region KH_5 PF13184.1 gi|330506983|ref|YP_004383411.1| - 0.047 13.4 0.2 0.096 12.4 0.1 1.5 1 0 0 1 1 1 0 NusA-like KH domain Methyltransf_31 PF13847.1 gi|330506984|ref|YP_004383412.1| - 1.3e-14 54.0 0.0 1.7e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330506984|ref|YP_004383412.1| - 2.2e-13 50.7 0.0 3.7e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330506984|ref|YP_004383412.1| - 7.2e-13 48.7 0.0 1.6e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330506984|ref|YP_004383412.1| - 6.5e-12 45.4 0.0 1.6e-11 44.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330506984|ref|YP_004383412.1| - 6.2e-10 39.4 0.0 1.7e-09 38.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330506984|ref|YP_004383412.1| - 4.3e-09 36.7 0.0 7.3e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330506984|ref|YP_004383412.1| - 7.1e-07 28.7 0.0 1e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|330506984|ref|YP_004383412.1| - 1.8e-05 23.9 0.0 2.1e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|330506984|ref|YP_004383412.1| - 2.3e-05 23.8 0.0 3.6e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_26 PF13659.1 gi|330506984|ref|YP_004383412.1| - 5.2e-05 23.2 0.0 8.5e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|330506984|ref|YP_004383412.1| - 6.6e-05 22.4 0.0 0.00015 21.2 0.0 1.6 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.1 gi|330506984|ref|YP_004383412.1| - 0.00058 19.5 0.0 0.00091 18.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330506984|ref|YP_004383412.1| - 0.0037 16.4 0.0 0.0072 15.4 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|330506984|ref|YP_004383412.1| - 0.0096 15.1 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB FtsJ PF01728.14 gi|330506984|ref|YP_004383412.1| - 0.045 13.7 0.0 0.067 13.1 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_9 PF08003.6 gi|330506984|ref|YP_004383412.1| - 0.063 11.9 0.0 0.09 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DapB_C PF05173.9 gi|330506986|ref|YP_004383414.1| - 1.1e-48 164.3 0.0 1.6e-48 163.8 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|330506986|ref|YP_004383414.1| - 7.5e-26 90.4 1.3 1.2e-25 89.8 0.9 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Frankia_peptide PF14407.1 gi|330506986|ref|YP_004383414.1| - 0.009 15.7 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. NAD_binding_10 PF13460.1 gi|330506986|ref|YP_004383414.1| - 0.022 14.7 2.7 0.036 14.0 1.9 1.5 1 1 0 1 1 1 0 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|330506986|ref|YP_004383414.1| - 0.028 13.3 0.1 0.042 12.7 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Gp_dh_N PF00044.19 gi|330506986|ref|YP_004383414.1| - 0.12 12.3 1.5 0.87 9.5 1.0 2.2 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DHDPS PF00701.17 gi|330506987|ref|YP_004383415.1| - 3.5e-98 327.7 0.0 3.8e-98 327.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.9 gi|330506987|ref|YP_004383415.1| - 0.03 13.3 1.2 0.34 9.9 0.0 2.1 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Ribosomal_S17e PF00833.13 gi|330506988|ref|YP_004383416.1| - 1.2e-10 41.1 0.1 1.2e-10 41.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 SWIRM PF04433.12 gi|330506988|ref|YP_004383416.1| - 0.039 14.0 0.1 0.039 14.0 0.1 1.2 1 0 0 1 1 1 0 SWIRM domain GED PF02212.13 gi|330506988|ref|YP_004383416.1| - 0.069 13.0 0.0 0.082 12.8 0.0 1.1 1 0 0 1 1 1 0 Dynamin GTPase effector domain Maf1 PF09174.5 gi|330506988|ref|YP_004383416.1| - 0.091 12.6 0.1 0.095 12.5 0.0 1.0 1 0 0 1 1 1 0 Maf1 regulator Phos_pyr_kin PF08543.7 gi|330506989|ref|YP_004383417.1| - 3.8e-85 285.0 0.1 4.7e-85 284.7 0.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|330506989|ref|YP_004383417.1| - 5.5e-20 71.4 0.0 1e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|330506989|ref|YP_004383417.1| - 1.1e-05 24.7 0.1 1.7e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|330506989|ref|YP_004383417.1| - 0.059 12.6 0.5 0.11 11.7 0.4 1.5 1 1 0 1 1 1 0 Carbohydrate kinase Clathrin_H_link PF13838.1 gi|330506990|ref|YP_004383418.1| - 2.2e-06 27.4 16.7 0.56 10.1 0.1 5.1 3 2 2 5 5 5 4 Clathrin-H-link Sigma70_r4 PF04545.11 gi|330506990|ref|YP_004383418.1| - 0.012 14.9 0.0 2.7 7.3 0.0 3.3 3 0 0 3 3 3 0 Sigma-70, region 4 TFIIB PF00382.14 gi|330506990|ref|YP_004383418.1| - 0.022 14.5 1.2 4.4 7.1 0.0 3.9 4 0 0 4 4 4 0 Transcription factor TFIIB repeat P5CR_dimer PF14748.1 gi|330506990|ref|YP_004383418.1| - 0.11 12.5 0.3 0.35 10.8 0.1 1.9 2 0 0 2 2 2 0 Pyrroline-5-carboxylate reductase dimerisation PHP_C PF13263.1 gi|330506990|ref|YP_004383418.1| - 0.11 12.0 4.7 12 5.4 0.1 4.1 4 0 0 4 4 4 0 PHP-associated DUF61 PF01886.11 gi|330506991|ref|YP_004383419.1| - 2.8e-42 143.6 0.3 3.2e-42 143.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 OapA PF04225.7 gi|330506991|ref|YP_004383419.1| - 0.079 12.8 0.1 1.6 8.7 0.0 2.1 2 0 0 2 2 2 0 Opacity-associated protein A LysM-like domain HD PF01966.17 gi|330506992|ref|YP_004383420.1| - 2.6e-10 40.3 3.2 6.3e-10 39.1 2.2 1.7 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|330506992|ref|YP_004383420.1| - 0.067 12.4 0.0 0.16 11.2 0.0 1.5 1 0 0 1 1 1 0 HDOD domain MFS_1 PF07690.11 gi|330506993|ref|YP_004383421.1| - 9.8e-49 165.9 52.8 9.8e-49 165.9 36.6 2.6 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|330506993|ref|YP_004383421.1| - 3.6e-05 22.0 21.3 0.0035 15.5 3.5 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.2 gi|330506993|ref|YP_004383421.1| - 5.8e-05 22.8 0.8 5.8e-05 22.8 0.5 3.7 4 0 0 4 4 4 2 MFS_1 like family DUF4102 PF13356.1 gi|330506994|ref|YP_004383422.1| - 0.015 15.1 3.2 0.31 10.9 1.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4102) GIY-YIG PF01541.19 gi|330506994|ref|YP_004383422.1| - 0.11 12.9 2.6 0.99 9.8 0.3 2.3 2 0 0 2 2 2 0 GIY-YIG catalytic domain DDE_Tnp_IS1 PF03400.8 gi|330506995|ref|YP_004383423.1| - 0.0019 18.3 0.0 0.0031 17.6 0.0 1.3 1 0 0 1 1 1 1 IS1 transposase DUF3049 PF11250.3 gi|330506995|ref|YP_004383423.1| - 0.019 14.7 1.5 1.1 9.1 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3049) DUF433 PF04255.9 gi|330506996|ref|YP_004383424.1| - 0.017 14.4 0.3 0.035 13.5 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF433) AMP-binding_C_2 PF14535.1 gi|330506999|ref|YP_004383427.1| - 2.8e-32 110.6 0.0 5.7e-32 109.6 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|330506999|ref|YP_004383427.1| - 6.3e-19 67.6 1.0 2.9e-18 65.4 0.7 1.9 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|330506999|ref|YP_004383427.1| - 1.7e-07 30.2 0.0 0.0075 14.9 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|330506999|ref|YP_004383427.1| - 0.039 12.4 0.0 4.8 5.5 0.0 2.1 2 0 0 2 2 2 0 GH3 auxin-responsive promoter ACT PF01842.20 gi|330507000|ref|YP_004383428.1| - 2.7e-15 55.4 0.0 1.3e-08 34.0 0.0 2.3 2 1 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|330507000|ref|YP_004383428.1| - 3.7e-06 27.1 0.3 0.011 16.0 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|330507000|ref|YP_004383428.1| - 8e-05 22.0 0.1 0.0079 15.6 0.0 2.7 2 1 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|330507000|ref|YP_004383428.1| - 0.016 14.9 0.0 0.056 13.1 0.0 1.9 2 0 0 2 2 2 0 ACT domain DDE_Tnp_IS1 PF03400.8 gi|330507002|ref|YP_004383430.1| - 0.0019 18.3 0.0 0.0031 17.6 0.0 1.3 1 0 0 1 1 1 1 IS1 transposase DUF3049 PF11250.3 gi|330507002|ref|YP_004383430.1| - 0.019 14.7 1.5 1.1 9.1 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3049) zf-BED PF02892.10 gi|330507003|ref|YP_004383431.1| - 0.014 15.1 0.5 0.039 13.7 0.4 1.8 1 0 0 1 1 1 0 BED zinc finger DUF433 PF04255.9 gi|330507003|ref|YP_004383431.1| - 0.032 13.6 0.5 0.14 11.5 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF433) Zn_Tnp_IS1 PF03811.8 gi|330507003|ref|YP_004383431.1| - 0.053 13.0 1.5 0.087 12.3 1.0 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_40 PF14493.1 gi|330507003|ref|YP_004383431.1| - 0.079 13.1 0.2 0.097 12.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|330507003|ref|YP_004383431.1| - 0.088 12.4 0.1 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Rrn6 PF10214.4 gi|330507005|ref|YP_004383433.1| - 0.0067 14.5 0.3 0.0068 14.5 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase I-specific transcription-initiation factor SprT-like PF10263.4 gi|330507005|ref|YP_004383433.1| - 0.03 13.9 1.5 0.033 13.8 1.1 1.1 1 0 0 1 1 1 0 SprT-like family DUF3731 PF12531.3 gi|330507005|ref|YP_004383433.1| - 0.079 12.4 0.3 0.083 12.4 0.2 1.0 1 0 0 1 1 1 0 DNA-K related protein Nsp1_C PF05064.8 gi|330507005|ref|YP_004383433.1| - 0.087 12.4 0.2 0.11 12.1 0.1 1.3 1 1 0 1 1 1 0 Nsp1-like C-terminal region DUF3199 PF11436.3 gi|330507005|ref|YP_004383433.1| - 0.11 12.2 0.1 0.38 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3199) STAT_int PF02865.12 gi|330507005|ref|YP_004383433.1| - 0.12 12.3 0.9 0.13 12.2 0.7 1.1 1 0 0 1 1 1 0 STAT protein, protein interaction domain DUF2156 PF09924.4 gi|330507006|ref|YP_004383434.1| - 6.8e-45 153.1 0.0 8.1e-45 152.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2156) Acetyltransf_1 PF00583.19 gi|330507007|ref|YP_004383435.1| - 3.9e-10 39.6 0.0 6e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|330507007|ref|YP_004383435.1| - 8.2e-09 35.5 0.0 1.3e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|330507007|ref|YP_004383435.1| - 2.9e-07 30.6 0.0 3.6e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|330507007|ref|YP_004383435.1| - 0.00017 21.2 0.0 0.00043 19.9 0.0 1.6 1 1 1 2 2 2 1 FR47-like protein AAA PF00004.24 gi|330507008|ref|YP_004383436.1| - 9.6e-96 317.0 0.0 4.2e-47 159.6 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|330507008|ref|YP_004383436.1| - 7.8e-26 89.8 0.0 1.1e-24 86.1 0.1 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_22 PF13401.1 gi|330507008|ref|YP_004383436.1| - 7.4e-15 55.2 0.1 6.1e-05 23.1 0.0 4.4 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|330507008|ref|YP_004383436.1| - 3.5e-14 53.2 0.0 1.6e-06 28.2 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.9 gi|330507008|ref|YP_004383436.1| - 1.4e-13 51.1 0.0 5.1e-07 29.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|330507008|ref|YP_004383436.1| - 1.6e-13 50.0 0.3 3.7e-13 48.8 0.2 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_17 PF13207.1 gi|330507008|ref|YP_004383436.1| - 9.8e-13 48.9 0.1 1.9e-05 25.4 0.0 3.0 2 2 0 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|330507008|ref|YP_004383436.1| - 1.2e-12 47.3 0.0 4.3e-05 22.6 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|330507008|ref|YP_004383436.1| - 1.6e-12 47.4 0.0 4e-06 26.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|330507008|ref|YP_004383436.1| - 6.4e-12 45.5 0.0 1.5e-05 24.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|330507008|ref|YP_004383436.1| - 2.6e-11 43.4 1.5 0.00021 21.0 0.0 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|330507008|ref|YP_004383436.1| - 6.5e-11 41.5 0.0 0.00032 19.5 0.0 2.7 3 0 0 3 3 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|330507008|ref|YP_004383436.1| - 6.6e-11 41.6 0.0 0.00011 21.4 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|330507008|ref|YP_004383436.1| - 3e-09 36.5 0.1 0.0028 17.1 0.0 3.2 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|330507008|ref|YP_004383436.1| - 8.8e-09 34.9 0.8 0.0034 17.1 0.0 3.0 2 0 0 2 2 2 2 Part of AAA domain NACHT PF05729.7 gi|330507008|ref|YP_004383436.1| - 1.6e-08 34.3 0.2 0.057 13.0 0.0 4.2 3 1 1 4 4 4 2 NACHT domain Mg_chelatase PF01078.16 gi|330507008|ref|YP_004383436.1| - 2.7e-08 33.2 0.4 0.0048 16.0 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|330507008|ref|YP_004383436.1| - 4.7e-08 32.6 4.7 0.02 14.3 0.1 4.1 2 2 1 3 3 3 3 AAA domain Sigma54_activat PF00158.21 gi|330507008|ref|YP_004383436.1| - 1e-07 31.5 0.0 0.016 14.6 0.0 3.1 2 2 0 2 2 2 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|330507008|ref|YP_004383436.1| - 1.7e-07 31.2 0.0 0.068 12.8 0.0 4.0 2 2 1 3 3 3 2 Archaeal ATPase AAA_28 PF13521.1 gi|330507008|ref|YP_004383436.1| - 2e-07 31.0 0.0 0.019 14.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|330507008|ref|YP_004383436.1| - 2.8e-07 30.8 0.0 0.041 14.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|330507008|ref|YP_004383436.1| - 6.9e-07 29.4 0.0 0.052 13.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.22 gi|330507008|ref|YP_004383436.1| - 2.6e-06 27.7 0.0 0.082 13.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.1 gi|330507008|ref|YP_004383436.1| - 3.3e-06 26.8 0.0 0.023 14.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.8 gi|330507008|ref|YP_004383436.1| - 3.7e-06 26.0 0.0 0.021 13.7 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|330507008|ref|YP_004383436.1| - 8.7e-06 24.7 0.0 0.1 11.4 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|330507008|ref|YP_004383436.1| - 1.2e-05 25.4 0.0 0.16 11.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|330507008|ref|YP_004383436.1| - 2.2e-05 23.5 0.0 0.16 10.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_3 PF07726.6 gi|330507008|ref|YP_004383436.1| - 3.3e-05 23.4 0.0 0.33 10.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|330507008|ref|YP_004383436.1| - 4.7e-05 23.0 0.0 0.18 11.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain PhoH PF02562.11 gi|330507008|ref|YP_004383436.1| - 8.3e-05 21.9 0.1 0.46 9.6 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein ResIII PF04851.10 gi|330507008|ref|YP_004383436.1| - 9.8e-05 22.2 0.0 0.15 11.9 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Bac_DnaA PF00308.13 gi|330507008|ref|YP_004383436.1| - 0.00011 21.8 0.0 0.76 9.3 0.0 3.2 2 1 0 2 2 2 2 Bacterial dnaA protein KaiC PF06745.8 gi|330507008|ref|YP_004383436.1| - 0.00018 20.7 0.2 0.61 9.1 0.0 2.8 2 1 0 2 2 2 2 KaiC DUF2075 PF09848.4 gi|330507008|ref|YP_004383436.1| - 0.00038 19.5 0.0 0.37 9.7 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|330507008|ref|YP_004383436.1| - 0.00052 19.6 0.0 0.6 9.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|330507008|ref|YP_004383436.1| - 0.00053 19.7 0.0 0.6 9.8 0.0 2.8 2 0 0 2 2 2 1 NTPase SKI PF01202.17 gi|330507008|ref|YP_004383436.1| - 0.00056 19.8 0.0 1.9 8.3 0.0 3.4 3 0 0 3 3 3 1 Shikimate kinase T2SE PF00437.15 gi|330507008|ref|YP_004383436.1| - 0.00071 18.5 0.0 0.29 9.9 0.0 2.6 3 0 0 3 3 2 1 Type II/IV secretion system protein Guanylate_kin PF00625.16 gi|330507008|ref|YP_004383436.1| - 0.00077 18.9 0.1 7.6 5.9 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase UPF0079 PF02367.12 gi|330507008|ref|YP_004383436.1| - 0.00087 18.9 0.1 1.9 8.1 0.0 2.7 2 1 1 3 3 2 1 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|330507008|ref|YP_004383436.1| - 0.0023 17.4 0.0 1.5 8.2 0.0 2.6 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AFG1_ATPase PF03969.11 gi|330507008|ref|YP_004383436.1| - 0.0023 16.7 0.0 1.3 7.7 0.0 2.6 3 0 0 3 3 3 1 AFG1-like ATPase KAP_NTPase PF07693.9 gi|330507008|ref|YP_004383436.1| - 0.0031 16.5 0.1 0.84 8.5 0.0 2.9 2 2 1 3 3 3 1 KAP family P-loop domain CPT PF07931.7 gi|330507008|ref|YP_004383436.1| - 0.0053 16.4 0.0 2.9 7.5 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_23 PF13476.1 gi|330507008|ref|YP_004383436.1| - 0.0078 16.5 0.0 3.3 7.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.13 gi|330507008|ref|YP_004383436.1| - 0.011 15.3 0.0 4.4 6.7 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KTI12 PF08433.5 gi|330507008|ref|YP_004383436.1| - 0.017 14.3 0.1 10 5.2 0.0 3.0 3 0 0 3 3 3 0 Chromatin associated protein KTI12 MCM PF00493.18 gi|330507008|ref|YP_004383436.1| - 0.022 13.5 0.0 3.5 6.3 0.0 3.0 3 0 0 3 3 3 0 MCM2/3/5 family Cytidylate_kin2 PF13189.1 gi|330507008|ref|YP_004383436.1| - 0.022 14.6 0.0 1.5 8.6 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family cobW PF02492.14 gi|330507008|ref|YP_004383436.1| - 0.045 13.1 0.1 11 5.4 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|330507008|ref|YP_004383436.1| - 0.047 13.1 0.0 11 5.5 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|330507008|ref|YP_004383436.1| - 0.05 13.0 0.8 8.7 5.6 0.0 3.3 3 1 0 4 4 3 0 AAA-like domain Torsin PF06309.6 gi|330507008|ref|YP_004383436.1| - 0.061 13.2 0.0 7.3 6.4 0.0 2.4 2 0 0 2 2 2 0 Torsin DAP3 PF10236.4 gi|330507008|ref|YP_004383436.1| - 0.096 11.6 0.0 12 4.6 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 IPT PF01745.11 gi|330507008|ref|YP_004383436.1| - 0.15 11.2 0.1 11 5.1 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase PIF1 PF05970.9 gi|330507008|ref|YP_004383436.1| - 0.25 10.2 0.0 17 4.2 0.0 2.9 3 0 0 3 3 3 0 PIF1-like helicase Epimerase_Csub PF13950.1 gi|330507010|ref|YP_004383438.1| - 6.6e-05 22.7 0.0 6.7e-05 22.7 0.0 1.0 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Acylphosphatase PF00708.13 gi|330507011|ref|YP_004383439.1| - 6.1e-12 45.4 0.8 1.1e-11 44.6 0.1 1.7 2 0 0 2 2 2 1 Acylphosphatase DUF869 PF05911.6 gi|330507011|ref|YP_004383439.1| - 0.0014 16.9 0.6 0.0017 16.7 0.4 1.0 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) DUF2730 PF10805.3 gi|330507011|ref|YP_004383439.1| - 0.0037 16.9 2.9 0.12 12.1 1.7 2.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2730) DUF1191 PF06697.7 gi|330507011|ref|YP_004383439.1| - 0.0056 15.5 0.0 0.0069 15.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1191) DUF2353 PF09789.4 gi|330507011|ref|YP_004383439.1| - 0.0057 15.9 1.6 0.0085 15.3 1.1 1.5 1 1 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) DUF1664 PF07889.7 gi|330507011|ref|YP_004383439.1| - 0.01 15.6 2.3 0.49 10.1 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TBPIP PF07106.8 gi|330507011|ref|YP_004383439.1| - 0.02 14.4 0.6 0.02 14.4 0.4 1.5 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) WEMBL PF05701.6 gi|330507011|ref|YP_004383439.1| - 0.028 12.8 1.4 0.04 12.3 0.9 1.4 1 1 0 1 1 1 0 Weak chloroplast movement under blue light APG17 PF04108.7 gi|330507011|ref|YP_004383439.1| - 0.038 12.8 0.5 0.061 12.1 0.1 1.4 1 1 1 2 2 2 0 Autophagy protein Apg17 Spc7 PF08317.6 gi|330507011|ref|YP_004383439.1| - 0.042 12.5 0.7 0.048 12.3 0.5 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Fez1 PF06818.10 gi|330507011|ref|YP_004383439.1| - 0.046 13.7 0.1 0.075 13.0 0.1 1.4 1 0 0 1 1 1 0 Fez1 PEARLI-4 PF05278.7 gi|330507011|ref|YP_004383439.1| - 0.047 13.0 2.6 0.053 12.8 1.8 1.2 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) BLOC1_2 PF10046.4 gi|330507011|ref|YP_004383439.1| - 0.049 13.7 2.2 0.17 12.0 0.3 2.3 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.1 gi|330507011|ref|YP_004383439.1| - 0.069 12.3 2.7 0.047 12.8 0.5 1.8 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Phage_GP20 PF06810.6 gi|330507011|ref|YP_004383439.1| - 0.07 12.5 4.5 0.85 9.0 0.9 2.9 1 1 2 3 3 3 0 Phage minor structural protein GP20 Img2 PF05046.9 gi|330507011|ref|YP_004383439.1| - 0.077 13.2 0.4 0.22 11.7 0.1 2.0 2 0 0 2 2 1 0 Mitochondrial large subunit ribosomal protein (Img2) DUF948 PF06103.6 gi|330507011|ref|YP_004383439.1| - 0.086 12.7 0.7 0.6 10.0 0.1 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Tektin PF03148.9 gi|330507011|ref|YP_004383439.1| - 0.1 11.1 0.8 0.12 10.8 0.6 1.3 1 0 0 1 1 1 0 Tektin family DASH_Dam1 PF08653.5 gi|330507011|ref|YP_004383439.1| - 0.11 12.2 0.6 1.2 8.9 0.0 2.5 1 1 1 2 2 2 0 DASH complex subunit Dam1 DNA_ligase_OB PF03120.11 gi|330507011|ref|YP_004383439.1| - 0.13 11.9 0.2 0.39 10.3 0.1 1.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase OB-fold domain DUF972 PF06156.8 gi|330507011|ref|YP_004383439.1| - 0.14 12.4 1.5 0.22 11.8 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Vps51 PF08700.6 gi|330507011|ref|YP_004383439.1| - 0.16 11.7 4.7 0.56 10.0 0.7 3.0 1 1 2 3 3 3 0 Vps51/Vps67 TPR_MLP1_2 PF07926.7 gi|330507011|ref|YP_004383439.1| - 0.19 11.4 0.8 0.42 10.3 0.0 1.8 2 1 0 2 2 1 0 TPR/MLP1/MLP2-like protein KxDL PF10241.4 gi|330507011|ref|YP_004383439.1| - 0.23 11.3 2.4 4.7 7.1 0.1 3.1 1 1 1 3 3 3 0 Uncharacterized conserved protein CsbD PF05532.7 gi|330507011|ref|YP_004383439.1| - 0.25 11.0 10.5 0.15 11.7 1.6 3.0 2 1 1 3 3 3 0 CsbD-like COMP PF11598.3 gi|330507011|ref|YP_004383439.1| - 0.28 11.3 6.1 66 3.6 4.2 3.2 1 1 0 1 1 1 0 Cartilage oligomeric matrix protein COG2 PF06148.6 gi|330507011|ref|YP_004383439.1| - 0.54 10.1 2.5 0.72 9.7 0.5 2.1 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2746 PF10874.3 gi|330507011|ref|YP_004383439.1| - 1.9 8.7 10.9 90 3.3 0.2 3.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2746) DUF724 PF05266.9 gi|330507011|ref|YP_004383439.1| - 3.6 7.1 6.5 1.5 8.4 2.6 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF724) DUF3740 PF12548.3 gi|330507011|ref|YP_004383439.1| - 7.6 6.7 8.4 5.5 7.2 1.0 2.8 1 1 1 2 2 2 0 Sulfatase protein OrfB_IS605 PF01385.14 gi|330507013|ref|YP_004383441.1| - 1.2e-41 142.5 0.0 1.9e-41 141.9 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330507013|ref|YP_004383441.1| - 8.7e-25 86.1 0.2 1.5e-24 85.4 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330507013|ref|YP_004383441.1| - 1.7e-13 49.6 0.6 3.6e-13 48.6 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-NADH-PPase PF09297.6 gi|330507013|ref|YP_004383441.1| - 0.025 14.0 0.8 0.05 13.1 0.6 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|330507013|ref|YP_004383441.1| - 0.15 11.3 0.2 0.28 10.4 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|330507013|ref|YP_004383441.1| - 0.22 10.8 1.6 4.6 6.6 0.1 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Y1_Tnp PF01797.11 gi|330507014|ref|YP_004383442.1| - 2.1e-36 124.4 0.2 2.4e-36 124.2 0.2 1.0 1 0 0 1 1 1 1 Transposase IS200 like Acylphosphatase PF00708.13 gi|330507015|ref|YP_004383443.1| - 8.8e-07 28.9 0.0 1.3e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Acylphosphatase DUF2255 PF10012.4 gi|330507015|ref|YP_004383443.1| - 0.056 13.4 0.1 0.081 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2255) Lectin_N PF03954.9 gi|330507016|ref|YP_004383444.1| - 0.012 14.9 0.2 0.014 14.8 0.1 1.1 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain Toxin_51 PF15531.1 gi|330507016|ref|YP_004383444.1| - 0.057 13.2 0.1 0.067 12.9 0.1 1.1 1 0 0 1 1 1 0 Putative toxin 51 Methyltransf_24 PF13578.1 gi|330507017|ref|YP_004383445.1| - 4.3e-13 49.9 0.0 7.7e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|330507017|ref|YP_004383445.1| - 0.009 15.0 0.0 0.018 14.0 0.0 1.5 1 0 0 1 1 1 1 O-methyltransferase UPF0150 PF03681.10 gi|330507018|ref|YP_004383446.1| - 2.7e-11 42.8 0.1 3.7e-11 42.4 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Acylphosphatase PF00708.13 gi|330507019|ref|YP_004383447.1| - 5.1e-22 77.7 0.1 1.4e-21 76.4 0.0 1.7 2 0 0 2 2 2 1 Acylphosphatase Cas_Cas02710 PF09670.5 gi|330507019|ref|YP_004383447.1| - 0.0029 16.2 0.5 0.053 12.1 0.3 2.0 1 1 1 2 2 2 1 CRISPR-associated protein (Cas_Cas02710) DUF3552 PF12072.3 gi|330507019|ref|YP_004383447.1| - 0.11 11.6 7.4 0.16 11.1 5.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) XhlA PF10779.4 gi|330507019|ref|YP_004383447.1| - 0.56 10.1 10.3 21 5.0 7.1 2.3 1 1 0 1 1 1 0 Haemolysin XhlA DUF16 PF01519.11 gi|330507019|ref|YP_004383447.1| - 2.6 8.3 8.2 6.3 7.0 5.7 1.7 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF1664 PF07889.7 gi|330507019|ref|YP_004383447.1| - 3.5 7.4 7.2 9.1 6.1 5.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF104 PF01954.11 gi|330507020|ref|YP_004383448.1| - 6.2e-11 42.1 3.5 6.9e-11 42.0 2.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Antitoxin-MazE PF04014.13 gi|330507020|ref|YP_004383448.1| - 0.00065 19.3 1.2 0.0019 17.8 0.2 2.0 1 1 1 2 2 2 1 Antidote-toxin recognition MazE FeoA PF04023.9 gi|330507020|ref|YP_004383448.1| - 0.048 13.6 0.1 0.079 12.9 0.0 1.4 1 1 0 1 1 1 0 FeoA domain TrkA_C PF02080.16 gi|330507020|ref|YP_004383448.1| - 0.11 12.1 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 TrkA-C domain PIN PF01850.16 gi|330507021|ref|YP_004383449.1| - 1.8e-12 47.6 0.0 2.6e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 PIN domain B12-binding PF02310.14 gi|330507021|ref|YP_004383449.1| - 0.083 12.7 0.1 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 B12 binding domain tRNA_lig_kinase PF08303.6 gi|330507022|ref|YP_004383450.1| - 0.022 14.6 0.2 0.025 14.4 0.1 1.2 1 0 0 1 1 1 0 tRNA ligase kinase domain SbcD_C PF12320.3 gi|330507022|ref|YP_004383450.1| - 0.034 14.1 1.9 0.039 13.9 1.1 1.3 1 1 0 1 1 1 0 Type 5 capsule protein repressor C-terminal domain PspB PF06667.7 gi|330507022|ref|YP_004383450.1| - 0.093 12.6 0.4 0.093 12.6 0.3 1.8 1 1 1 2 2 2 0 Phage shock protein B PIN PF01850.16 gi|330507023|ref|YP_004383451.1| - 1.4e-12 47.9 0.1 1.7e-12 47.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain UPF0150 PF03681.10 gi|330507024|ref|YP_004383452.1| - 1.2e-18 66.4 0.1 1.6e-18 66.0 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|330507024|ref|YP_004383452.1| - 0.0024 17.3 0.0 0.0032 17.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) YcfA PF07927.7 gi|330507025|ref|YP_004383453.1| - 6.1e-11 42.0 0.1 7.1e-11 41.8 0.1 1.1 1 0 0 1 1 1 1 YcfA-like protein DUF104 PF01954.11 gi|330507026|ref|YP_004383454.1| - 3.3e-09 36.6 3.5 3.8e-09 36.4 2.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Antitoxin-MazE PF04014.13 gi|330507026|ref|YP_004383454.1| - 0.14 11.9 0.4 0.22 11.2 0.3 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE Transposase_20 PF02371.11 gi|330507027|ref|YP_004383455.1| - 1.3e-25 89.3 0.1 2.3e-25 88.5 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|330507027|ref|YP_004383455.1| - 1.1e-23 83.4 0.0 1.9e-23 82.7 0.0 1.4 1 0 0 1 1 1 1 Transposase Lectin_N PF03954.9 gi|330507027|ref|YP_004383455.1| - 0.032 13.6 0.0 0.38 10.1 0.0 2.2 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain UPF0175 PF03683.8 gi|330507030|ref|YP_004383458.1| - 7.2e-14 51.0 0.2 9.4e-14 50.6 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) SinI PF08671.5 gi|330507030|ref|YP_004383458.1| - 0.035 13.5 0.5 0.066 12.6 0.1 1.7 2 0 0 2 2 2 0 Anti-repressor SinI Epimerase_2 PF02350.14 gi|330507031|ref|YP_004383459.1| - 3.4e-14 52.3 0.0 4.2e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_2 PF00535.21 gi|330507032|ref|YP_004383460.1| - 2.1e-21 76.3 0.0 3e-21 75.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330507032|ref|YP_004383460.1| - 2.8e-06 27.3 0.0 4.1e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|330507032|ref|YP_004383460.1| - 0.00066 19.9 0.0 0.037 14.3 0.0 2.5 2 1 1 3 3 3 1 Glycosyl transferase family 2 DUF373 PF04123.8 gi|330507032|ref|YP_004383460.1| - 0.25 10.3 5.6 0.19 10.7 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF373) PDDEXK_3 PF13366.1 gi|330507033|ref|YP_004383461.1| - 6.3e-42 142.3 0.0 7.4e-42 142.1 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|330507033|ref|YP_004383461.1| - 0.083 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF83 DUF2283 PF10049.4 gi|330507034|ref|YP_004383462.1| - 3.3e-11 42.8 1.2 4.1e-11 42.5 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Lectin_legB PF00139.14 gi|330507034|ref|YP_004383462.1| - 0.094 12.0 0.0 0.096 12.0 0.0 1.1 1 0 0 1 1 1 0 Legume lectin domain Epimerase_2 PF02350.14 gi|330507035|ref|YP_004383463.1| - 2.4e-16 59.4 0.0 3.1e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase UPF0175 PF03683.8 gi|330507037|ref|YP_004383465.1| - 7.2e-14 51.0 0.2 9.4e-14 50.6 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) SinI PF08671.5 gi|330507037|ref|YP_004383465.1| - 0.035 13.5 0.5 0.066 12.6 0.1 1.7 2 0 0 2 2 2 0 Anti-repressor SinI PIN PF01850.16 gi|330507039|ref|YP_004383467.1| - 0.00018 21.7 0.0 0.00023 21.4 0.0 1.2 1 0 0 1 1 1 1 PIN domain Big_3 PF07523.7 gi|330507040|ref|YP_004383468.1| - 0.04 13.9 0.1 0.051 13.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) Glycos_transf_2 PF00535.21 gi|330507041|ref|YP_004383469.1| - 2.5e-22 79.3 0.0 3.6e-22 78.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330507041|ref|YP_004383469.1| - 1.3e-06 28.3 0.0 2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|330507041|ref|YP_004383469.1| - 0.00036 20.7 0.0 0.097 13.0 0.0 2.6 2 1 1 3 3 3 2 Glycosyl transferase family 2 DUF373 PF04123.8 gi|330507041|ref|YP_004383469.1| - 0.19 10.6 5.3 0.15 11.0 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF373) PDDEXK_3 PF13366.1 gi|330507042|ref|YP_004383470.1| - 2.2e-42 143.8 0.0 2.5e-42 143.6 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|330507042|ref|YP_004383470.1| - 0.065 13.1 0.0 0.088 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF83 DUF2283 PF10049.4 gi|330507043|ref|YP_004383471.1| - 3.3e-11 42.8 1.2 4.1e-11 42.5 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Lectin_legB PF00139.14 gi|330507043|ref|YP_004383471.1| - 0.094 12.0 0.0 0.096 12.0 0.0 1.1 1 0 0 1 1 1 0 Legume lectin domain Epimerase_2 PF02350.14 gi|330507044|ref|YP_004383472.1| - 6.2e-17 61.3 0.0 8e-17 61.0 0.0 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase PIN PF01850.16 gi|330507045|ref|YP_004383473.1| - 4.7e-17 62.4 2.4 5.7e-17 62.1 1.7 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|330507045|ref|YP_004383473.1| - 4.6e-05 24.0 0.6 9.1e-05 23.1 0.4 1.5 1 1 0 1 1 1 1 PIN domain DehI PF10778.4 gi|330507045|ref|YP_004383473.1| - 0.075 12.5 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 Halocarboxylic acid dehydrogenase DehI UPF0150 PF03681.10 gi|330507047|ref|YP_004383475.1| - 5.4e-08 32.3 0.0 7e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) GntR PF00392.16 gi|330507047|ref|YP_004383475.1| - 0.024 14.0 0.1 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF1902 PF08972.6 gi|330507047|ref|YP_004383475.1| - 0.031 13.8 0.0 0.04 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) UPF0150 PF03681.10 gi|330507048|ref|YP_004383476.1| - 8.1e-18 63.7 0.0 9.5e-18 63.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|330507048|ref|YP_004383476.1| - 0.15 12.1 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) DUF217 PF02697.9 gi|330507049|ref|YP_004383477.1| - 0.022 15.0 0.0 0.045 13.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 UPF0175 PF03683.8 gi|330507050|ref|YP_004383478.1| - 1.1e-14 53.5 0.1 1.6e-14 53.0 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) Phage_tail_U PF06141.6 gi|330507050|ref|YP_004383478.1| - 0.15 12.0 0.0 0.2 11.6 0.0 1.1 1 0 0 1 1 1 0 Phage minor tail protein U Epimerase_2 PF02350.14 gi|330507051|ref|YP_004383479.1| - 1.6e-15 56.7 0.0 1.8e-15 56.5 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Acylphosphatase PF00708.13 gi|330507052|ref|YP_004383480.1| - 3.7e-19 68.6 1.6 6.2e-19 67.9 0.1 1.9 2 0 0 2 2 2 1 Acylphosphatase Med10 PF09748.4 gi|330507052|ref|YP_004383480.1| - 0.0059 16.4 0.4 0.32 10.8 0.0 2.4 1 1 1 2 2 2 2 Transcription factor subunit Med10 of Mediator complex LON PF02190.11 gi|330507052|ref|YP_004383480.1| - 0.01 15.5 0.2 0.013 15.2 0.2 1.2 1 0 0 1 1 1 0 ATP-dependent protease La (LON) domain Baculo_PEP_C PF04513.7 gi|330507052|ref|YP_004383480.1| - 0.068 12.9 0.9 0.38 10.5 0.4 1.9 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Rootletin PF15035.1 gi|330507052|ref|YP_004383480.1| - 0.084 12.8 0.1 0.095 12.6 0.0 1.2 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF2365 PF10157.4 gi|330507052|ref|YP_004383480.1| - 0.096 12.5 1.8 0.15 11.9 1.2 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2365) BLOC1_2 PF10046.4 gi|330507052|ref|YP_004383480.1| - 0.11 12.6 1.3 2.4 8.3 0.1 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Uso1_p115_C PF04871.8 gi|330507052|ref|YP_004383480.1| - 0.14 12.0 3.0 0.2 11.6 2.1 1.3 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF457 PF04307.9 gi|330507053|ref|YP_004383481.1| - 4.6e-15 55.3 11.7 5.8e-15 54.9 8.1 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|330507053|ref|YP_004383481.1| - 0.00035 20.2 0.1 0.00053 19.6 0.1 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C HTH_45 PF14947.1 gi|330507054|ref|YP_004383482.1| - 1.6e-17 63.0 0.3 1.8e-17 62.9 0.2 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|330507054|ref|YP_004383482.1| - 0.0062 16.2 0.0 0.0082 15.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2172 PF09940.4 gi|330507054|ref|YP_004383482.1| - 0.033 12.5 0.1 0.039 12.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2172) Glyco_transf_22 PF03901.12 gi|330507055|ref|YP_004383483.1| - 0.96 8.3 8.0 1.1 8.1 5.5 1.0 1 0 0 1 1 1 0 Alg9-like mannosyltransferase family DUF3392 PF11872.3 gi|330507055|ref|YP_004383483.1| - 4 7.4 7.3 25 4.8 5.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3392) Abi PF02517.11 gi|330507056|ref|YP_004383484.1| - 6.4e-15 55.0 9.6 6.4e-15 55.0 6.7 3.0 3 1 0 3 3 3 1 CAAX protease self-immunity Glyco_hydro_57 PF03065.10 gi|330507057|ref|YP_004383485.1| - 3.5e-61 207.1 0.1 1.4e-60 205.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|330507057|ref|YP_004383485.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase GDE_C PF06202.9 gi|330507058|ref|YP_004383486.1| - 1.1e-111 373.1 0.0 1.7e-111 372.5 0.0 1.3 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|330507058|ref|YP_004383486.1| - 1.5e-53 181.3 0.0 2.1e-53 180.8 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.8 gi|330507058|ref|YP_004383486.1| - 8.1e-06 24.7 0.0 1.3e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Glyco_hydro_100 PF12899.2 gi|330507058|ref|YP_004383486.1| - 0.0041 15.5 0.0 1.1 7.5 0.0 2.6 2 1 1 3 3 3 2 Alkaline and neutral invertase Bac_rhamnosid PF05592.6 gi|330507058|ref|YP_004383486.1| - 0.13 10.4 0.0 0.16 10.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial alpha-L-rhamnosidase TrkH PF02386.11 gi|330507059|ref|YP_004383487.1| - 4.1e-58 196.6 24.6 3e-57 193.7 10.5 2.4 2 1 0 2 2 2 2 Cation transport protein Peptidase_M50 PF02163.17 gi|330507059|ref|YP_004383487.1| - 0.2 10.5 1.6 0.77 8.6 0.1 2.6 2 2 0 2 2 2 0 Peptidase family M50 TrkA_N PF02254.13 gi|330507060|ref|YP_004383488.1| - 9.1e-52 173.9 3.5 3.5e-27 94.7 0.6 2.5 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|330507060|ref|YP_004383488.1| - 4.1e-15 55.1 0.0 2.9e-07 29.9 0.0 2.7 2 0 0 2 2 2 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|330507060|ref|YP_004383488.1| - 2.6e-11 43.7 1.7 1.2e-06 28.6 0.3 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding ApbA PF02558.11 gi|330507060|ref|YP_004383488.1| - 6.2e-10 38.6 0.3 0.00014 21.3 0.1 2.5 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|330507060|ref|YP_004383488.1| - 1.6e-08 34.7 1.9 0.0023 18.0 0.3 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_8 PF13450.1 gi|330507060|ref|YP_004383488.1| - 1.1e-07 31.7 0.1 0.00023 21.1 0.0 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|330507060|ref|YP_004383488.1| - 2.1e-07 30.4 0.5 0.0083 15.5 0.0 2.9 2 1 1 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|330507060|ref|YP_004383488.1| - 1.1e-06 27.9 0.0 0.00063 18.9 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain Saccharop_dh PF03435.13 gi|330507060|ref|YP_004383488.1| - 1.4e-06 27.5 1.9 0.00011 21.3 0.5 2.2 2 0 0 2 2 2 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|330507060|ref|YP_004383488.1| - 4.9e-06 26.8 2.1 0.063 13.7 0.0 2.9 3 0 0 3 3 2 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|330507060|ref|YP_004383488.1| - 8.1e-06 26.1 0.7 0.0025 18.1 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|330507060|ref|YP_004383488.1| - 1.4e-05 25.0 0.3 0.0026 17.6 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|330507060|ref|YP_004383488.1| - 6.5e-05 21.9 0.4 0.0038 16.1 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|330507060|ref|YP_004383488.1| - 7e-05 22.5 1.7 0.11 12.0 0.1 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|330507060|ref|YP_004383488.1| - 0.00011 21.9 0.2 0.089 12.5 0.0 2.5 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF1188 PF06690.6 gi|330507060|ref|YP_004383488.1| - 0.00028 20.1 0.5 0.028 13.5 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1188) XdhC_C PF13478.1 gi|330507060|ref|YP_004383488.1| - 0.00035 20.8 0.3 0.16 12.3 0.0 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain NmrA PF05368.8 gi|330507060|ref|YP_004383488.1| - 0.00063 19.0 1.2 0.12 11.6 0.2 2.3 2 0 0 2 2 2 1 NmrA-like family Methyltransf_31 PF13847.1 gi|330507060|ref|YP_004383488.1| - 0.001 18.6 0.3 0.0024 17.4 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain HI0933_like PF03486.9 gi|330507060|ref|YP_004383488.1| - 0.0012 17.4 0.3 0.099 11.0 0.1 2.4 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|330507060|ref|YP_004383488.1| - 0.003 16.5 0.1 0.41 9.5 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_2 PF03446.10 gi|330507060|ref|YP_004383488.1| - 0.0033 17.2 3.0 0.84 9.4 0.1 2.8 3 0 0 3 3 3 2 NAD binding domain of 6-phosphogluconate dehydrogenase Trp_halogenase PF04820.9 gi|330507060|ref|YP_004383488.1| - 0.01 14.5 0.0 0.29 9.7 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase GIDA PF01134.17 gi|330507060|ref|YP_004383488.1| - 0.011 14.6 0.0 0.02 13.7 0.0 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.16 gi|330507060|ref|YP_004383488.1| - 0.015 14.8 0.3 4.5 6.8 0.0 2.5 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|330507060|ref|YP_004383488.1| - 0.026 13.6 0.2 0.51 9.4 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_26 PF13659.1 gi|330507060|ref|YP_004383488.1| - 0.035 14.1 0.1 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain DFP PF04127.10 gi|330507060|ref|YP_004383488.1| - 0.054 13.1 1.0 6.9 6.2 0.0 2.8 3 0 0 3 3 3 0 DNA / pantothenate metabolism flavoprotein NAD_binding_9 PF13454.1 gi|330507060|ref|YP_004383488.1| - 0.08 12.7 0.5 5.7 6.6 0.0 3.0 2 1 1 3 3 3 0 FAD-NAD(P)-binding ThiF PF00899.16 gi|330507060|ref|YP_004383488.1| - 0.13 12.1 4.4 11 5.8 0.1 3.3 2 1 1 3 3 3 0 ThiF family DUF111 PF01969.12 gi|330507061|ref|YP_004383489.1| - 3.4e-125 417.8 0.4 3.8e-125 417.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Aminotran_3 PF00202.16 gi|330507062|ref|YP_004383490.1| - 1e-65 221.8 0.0 1.3e-65 221.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Rop-like PF05082.8 gi|330507062|ref|YP_004383490.1| - 0.0063 15.9 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Rop-like Porphobil_deam PF01379.15 gi|330507063|ref|YP_004383491.1| - 1.6e-68 229.8 0.1 2.2e-68 229.4 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|330507063|ref|YP_004383491.1| - 9.8e-10 38.4 0.2 1.9e-09 37.4 0.1 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.15 gi|330507063|ref|YP_004383491.1| - 0.00084 18.6 0.0 0.0013 18.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 TP_methylase PF00590.15 gi|330507064|ref|YP_004383492.1| - 4.3e-49 167.0 0.4 2.5e-48 164.5 0.0 2.3 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.10 gi|330507064|ref|YP_004383492.1| - 6.4e-48 163.0 0.5 9.1e-48 162.5 0.4 1.2 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Radical_SAM PF04055.16 gi|330507065|ref|YP_004383493.1| - 1.3e-27 96.9 0.0 3.2e-27 95.7 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330507065|ref|YP_004383493.1| - 4.2e-10 39.8 0.0 7.7e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|330507065|ref|YP_004383493.1| - 8e-09 35.7 0.1 2e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|330507065|ref|YP_004383493.1| - 7.8e-08 32.3 0.0 1.9e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain AAA PF00004.24 gi|330507066|ref|YP_004383494.1| - 1.1e-34 119.4 0.1 2e-34 118.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|330507066|ref|YP_004383494.1| - 2.8e-08 33.0 0.0 1.8e-07 30.4 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|330507066|ref|YP_004383494.1| - 1.6e-05 24.9 0.1 3e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|330507066|ref|YP_004383494.1| - 2.1e-05 25.3 1.4 5.1e-05 24.0 0.3 2.3 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|330507066|ref|YP_004383494.1| - 2.9e-05 23.1 0.0 0.0071 15.3 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Bac_DnaA PF00308.13 gi|330507066|ref|YP_004383494.1| - 6.2e-05 22.7 0.0 9.8e-05 22.0 0.0 1.3 1 1 0 1 1 1 1 Bacterial dnaA protein TIP49 PF06068.8 gi|330507066|ref|YP_004383494.1| - 0.00022 20.0 0.1 0.00055 18.7 0.0 1.7 2 0 0 2 2 2 1 TIP49 C-terminus AAA_16 PF13191.1 gi|330507066|ref|YP_004383494.1| - 0.00078 19.4 0.2 0.013 15.5 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|330507066|ref|YP_004383494.1| - 0.0013 17.8 0.0 0.0038 16.3 0.0 1.7 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|330507066|ref|YP_004383494.1| - 0.0023 18.0 0.7 0.16 12.1 0.1 2.4 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|330507066|ref|YP_004383494.1| - 0.0032 16.9 0.0 0.0052 16.2 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|330507066|ref|YP_004383494.1| - 0.0038 17.5 0.1 0.0086 16.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|330507066|ref|YP_004383494.1| - 0.0038 16.9 0.1 0.014 15.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|330507066|ref|YP_004383494.1| - 0.021 14.7 0.0 0.069 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|330507066|ref|YP_004383494.1| - 0.021 14.6 0.0 0.053 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|330507066|ref|YP_004383494.1| - 0.037 13.4 0.9 1.4 8.2 0.1 2.2 1 1 1 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|330507066|ref|YP_004383494.1| - 0.057 12.8 0.1 0.15 11.5 0.1 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain Kinesin PF00225.18 gi|330507066|ref|YP_004383494.1| - 0.086 11.5 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 Kinesin motor domain AAA_23 PF13476.1 gi|330507066|ref|YP_004383494.1| - 1.1 9.5 3.8 1.5 9.1 0.1 2.5 2 1 1 3 3 3 0 AAA domain ACT PF01842.20 gi|330507067|ref|YP_004383495.1| - 0.01 15.2 0.4 0.027 13.9 0.0 1.8 2 0 0 2 2 2 0 ACT domain HTH_Crp_2 PF13545.1 gi|330507067|ref|YP_004383495.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain OCD_Mu_crystall PF02423.10 gi|330507068|ref|YP_004383496.1| - 1.3e-107 359.1 0.0 1.5e-107 359.0 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|330507068|ref|YP_004383496.1| - 0.016 15.3 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Radical_SAM PF04055.16 gi|330507069|ref|YP_004383497.1| - 3.7e-16 59.7 0.4 6.1e-16 59.0 0.3 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|330507069|ref|YP_004383497.1| - 3.2e-05 23.9 0.1 3.2e-05 23.9 0.1 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330507069|ref|YP_004383497.1| - 6.4e-05 23.0 0.1 6.4e-05 23.0 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain SRP19 PF01922.12 gi|330507070|ref|YP_004383498.1| - 3.1e-20 72.5 0.1 3.8e-20 72.2 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein PHP PF02811.14 gi|330507071|ref|YP_004383499.1| - 6.7e-15 55.3 0.1 1e-14 54.6 0.0 1.4 1 1 0 1 1 1 1 PHP domain Mur_ligase PF01225.20 gi|330507071|ref|YP_004383499.1| - 0.012 15.6 0.5 3.4 7.8 0.1 2.4 1 1 1 2 2 2 0 Mur ligase family, catalytic domain Amidohydro_1 PF01979.15 gi|330507071|ref|YP_004383499.1| - 0.045 13.4 0.5 0.072 12.7 0.3 1.4 1 1 0 1 1 1 0 Amidohydrolase family DUF2209 PF09974.4 gi|330507072|ref|YP_004383500.1| - 1.1e-23 83.6 0.0 1.4e-23 83.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) MMR_HSR1 PF01926.18 gi|330507073|ref|YP_004383501.1| - 4.4e-21 74.9 0.0 7.4e-21 74.2 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|330507073|ref|YP_004383501.1| - 1.8e-09 37.0 0.0 3.9e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP-bdg_N PF13167.1 gi|330507073|ref|YP_004383501.1| - 1.6e-06 28.1 0.0 4.1e-06 26.8 0.0 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal GTP_EFTU PF00009.22 gi|330507073|ref|YP_004383501.1| - 9.7e-06 25.1 0.2 0.00037 19.9 0.1 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|330507073|ref|YP_004383501.1| - 0.00016 22.1 0.0 0.00032 21.1 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|330507073|ref|YP_004383501.1| - 0.0011 18.8 0.5 0.0053 16.5 0.1 2.2 2 1 1 3 3 3 1 Dynamin family ABC_tran PF00005.22 gi|330507073|ref|YP_004383501.1| - 0.024 14.9 0.1 0.044 14.0 0.1 1.6 1 1 0 1 1 1 0 ABC transporter DUF258 PF03193.11 gi|330507073|ref|YP_004383501.1| - 0.025 13.7 0.0 0.061 12.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 ATP_bind_1 PF03029.12 gi|330507073|ref|YP_004383501.1| - 0.04 13.4 0.2 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AIG1 PF04548.11 gi|330507073|ref|YP_004383501.1| - 0.056 12.5 0.0 0.095 11.7 0.0 1.2 1 0 0 1 1 1 0 AIG1 family cobW PF02492.14 gi|330507073|ref|YP_004383501.1| - 0.24 10.8 1.6 14 5.0 0.1 2.3 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ApbE PF02424.10 gi|330507074|ref|YP_004383502.1| - 1.7e-21 76.6 0.3 2.2e-21 76.3 0.2 1.3 1 0 0 1 1 1 1 ApbE family MC1 PF05854.6 gi|330507075|ref|YP_004383503.1| - 6.9e-45 150.9 2.8 7.7e-45 150.8 1.9 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 CofC PF01983.11 gi|330507076|ref|YP_004383504.1| - 3.4e-43 147.1 0.0 4e-43 146.8 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|330507076|ref|YP_004383504.1| - 0.0014 18.7 0.0 0.0019 18.3 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain F420_ligase PF01996.11 gi|330507077|ref|YP_004383505.1| - 3.9e-63 212.5 0.0 4.5e-63 212.3 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase eIF-5_eIF-2B PF01873.12 gi|330507079|ref|YP_004383507.1| - 7.6e-38 128.9 0.0 1.1e-37 128.4 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|330507079|ref|YP_004383507.1| - 1.9e-11 43.5 0.7 3.6e-11 42.6 0.5 1.4 1 0 0 1 1 1 1 TRAM domain ZF-HD_dimer PF04770.7 gi|330507079|ref|YP_004383507.1| - 0.05 13.6 0.8 0.079 13.0 0.6 1.3 1 0 0 1 1 1 0 ZF-HD protein dimerisation region zf-RanBP PF00641.13 gi|330507079|ref|YP_004383507.1| - 0.26 10.4 0.1 0.26 10.4 0.0 1.6 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Ribosomal_L16 PF00252.13 gi|330507080|ref|YP_004383508.1| - 1.8e-36 124.7 0.1 2.2e-36 124.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Asparaginase PF00710.15 gi|330507081|ref|YP_004383509.1| - 1.4e-90 303.3 0.0 1.7e-90 303.0 0.0 1.0 1 0 0 1 1 1 1 Asparaginase OrfB_Zn_ribbon PF07282.6 gi|330507082|ref|YP_004383510.1| - 2.4e-24 84.7 0.1 8.4e-24 83.0 0.0 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330507082|ref|YP_004383510.1| - 2.4e-11 43.4 2.6 3.4e-11 42.9 1.8 1.2 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|330507082|ref|YP_004383510.1| - 0.041 13.5 0.0 0.097 12.3 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|330507082|ref|YP_004383510.1| - 0.042 13.6 0.9 0.11 12.3 0.6 1.7 1 0 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.6 gi|330507082|ref|YP_004383510.1| - 0.13 12.3 5.9 1.4 9.1 4.1 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) Methyltransf_31 PF13847.1 gi|330507083|ref|YP_004383511.1| - 8.2e-24 83.9 0.0 1e-23 83.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330507083|ref|YP_004383511.1| - 6.9e-19 68.4 0.0 2.1e-18 66.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507083|ref|YP_004383511.1| - 1e-18 67.5 0.0 1.7e-18 66.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330507083|ref|YP_004383511.1| - 6.7e-16 58.4 0.0 9.7e-16 57.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507083|ref|YP_004383511.1| - 2.8e-15 56.5 0.0 4.4e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507083|ref|YP_004383511.1| - 3.9e-13 49.6 0.0 7e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330507083|ref|YP_004383511.1| - 4.8e-12 45.4 0.0 9.3e-12 44.5 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|330507083|ref|YP_004383511.1| - 6.6e-09 35.3 0.0 1.1e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|330507083|ref|YP_004383511.1| - 2.8e-06 27.3 0.0 7.2e-06 26.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|330507083|ref|YP_004383511.1| - 1e-05 24.7 0.0 1.6e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|330507083|ref|YP_004383511.1| - 1.2e-05 24.6 0.0 1.4e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|330507083|ref|YP_004383511.1| - 2.2e-05 24.0 0.0 3.3e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|330507083|ref|YP_004383511.1| - 5.2e-05 22.3 0.0 0.00011 21.3 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase DREV PF05219.7 gi|330507083|ref|YP_004383511.1| - 0.00032 19.6 0.0 0.00051 18.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|330507083|ref|YP_004383511.1| - 0.00046 19.6 0.0 0.00062 19.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) FmrO PF07091.6 gi|330507083|ref|YP_004383511.1| - 0.012 14.5 0.0 0.02 13.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_2 PF00891.13 gi|330507083|ref|YP_004383511.1| - 0.043 12.9 0.0 0.061 12.5 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_9 PF08003.6 gi|330507083|ref|YP_004383511.1| - 0.11 11.2 0.0 0.21 10.2 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) Ham1p_like PF01725.11 gi|330507084|ref|YP_004383512.1| - 5.4e-47 159.6 0.0 6.2e-47 159.4 0.0 1.0 1 0 0 1 1 1 1 Ham1 family DUF1232 PF06803.7 gi|330507086|ref|YP_004383514.1| - 5.5e-12 44.9 3.8 9e-12 44.2 2.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) TPR_1 PF00515.23 gi|330507087|ref|YP_004383515.1| - 1.1e-38 129.2 4.3 9e-09 34.5 0.0 5.5 5 1 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330507087|ref|YP_004383515.1| - 3.2e-36 122.7 12.9 3.4e-14 52.2 0.8 4.0 1 1 2 4 4 4 4 TPR repeat TPR_2 PF07719.12 gi|330507087|ref|YP_004383515.1| - 8.8e-36 118.9 4.6 5.9e-09 35.1 0.0 5.4 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330507087|ref|YP_004383515.1| - 1.5e-25 87.2 8.8 1.2e-06 28.2 0.0 6.0 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330507087|ref|YP_004383515.1| - 7.4e-25 84.8 3.2 1.5e-05 24.4 0.1 5.3 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330507087|ref|YP_004383515.1| - 1.8e-23 82.6 4.3 4.7e-08 33.4 0.2 4.2 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330507087|ref|YP_004383515.1| - 1.6e-20 71.7 3.5 0.0025 18.3 0.3 5.3 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330507087|ref|YP_004383515.1| - 5e-18 64.8 2.6 8.5e-07 28.8 0.2 3.6 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330507087|ref|YP_004383515.1| - 1.4e-16 60.5 5.6 0.00056 20.1 0.3 4.3 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330507087|ref|YP_004383515.1| - 1.3e-12 47.4 0.2 0.00014 21.6 0.0 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330507087|ref|YP_004383515.1| - 1.5e-11 43.1 2.1 0.017 14.8 0.0 4.6 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330507087|ref|YP_004383515.1| - 1.1e-07 31.8 0.5 1.5 9.4 0.0 4.9 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330507087|ref|YP_004383515.1| - 4.2e-07 29.6 3.8 0.014 15.3 0.1 4.5 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|330507087|ref|YP_004383515.1| - 5.9e-05 22.2 0.8 0.65 9.0 0.1 3.6 2 1 2 4 4 4 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|330507087|ref|YP_004383515.1| - 7.1e-05 22.8 1.5 0.06 13.4 0.1 3.1 1 1 3 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|330507087|ref|YP_004383515.1| - 0.0025 17.6 0.9 3.4 7.5 0.2 3.8 2 1 1 3 3 3 1 Domain of Unknown Function (DUF3856) Fis1_TPR_C PF14853.1 gi|330507087|ref|YP_004383515.1| - 0.0026 17.6 1.0 0.36 10.7 0.3 3.2 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.13 gi|330507087|ref|YP_004383515.1| - 0.0027 17.5 1.9 4 7.3 0.0 3.4 3 0 0 3 3 3 1 MIT (microtubule interacting and transport) domain NARP1 PF12569.3 gi|330507087|ref|YP_004383515.1| - 0.035 12.8 0.0 17 3.9 0.0 2.8 1 1 1 3 3 3 0 NMDA receptor-regulated protein 1 Alkyl_sulf_dimr PF14863.1 gi|330507087|ref|YP_004383515.1| - 0.05 13.8 0.5 0.12 12.6 0.1 1.8 2 1 0 2 2 2 0 Alkyl sulfatase dimerisation TPR_3 PF07720.7 gi|330507087|ref|YP_004383515.1| - 0.066 13.0 2.3 1.2 9.0 0.0 3.6 3 1 0 3 3 3 0 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|330507087|ref|YP_004383515.1| - 0.16 11.5 0.4 22 4.5 0.1 2.8 2 1 1 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 SHNi-TPR PF10516.4 gi|330507087|ref|YP_004383515.1| - 0.21 10.8 1.7 15 4.9 0.0 3.2 3 0 0 3 3 3 0 SHNi-TPR Peptidase_C1 PF00112.18 gi|330507089|ref|YP_004383517.1| - 4.3e-42 144.4 4.7 6.6e-42 143.8 3.2 1.3 1 0 0 1 1 1 1 Papain family cysteine protease DUF4114 PF13448.1 gi|330507089|ref|YP_004383517.1| - 3.2e-18 66.3 2.2 3.8e-09 37.2 0.0 3.7 4 0 0 4 4 4 2 Domain of unknown function (DUF4114) A2M_N PF01835.14 gi|330507089|ref|YP_004383517.1| - 0.0058 16.8 0.0 0.094 12.9 0.0 2.9 4 0 0 4 4 4 1 MG2 domain Peptidase_C1_2 PF03051.10 gi|330507089|ref|YP_004383517.1| - 0.12 10.9 2.0 0.85 8.0 0.4 2.1 2 0 0 2 2 2 0 Peptidase C1-like family DUF45 PF01863.12 gi|330507090|ref|YP_004383518.1| - 4.3e-24 85.4 0.8 7e-21 74.9 0.1 2.0 1 1 1 2 2 2 2 Protein of unknown function DUF45 SprT-like PF10263.4 gi|330507090|ref|YP_004383518.1| - 2.7e-07 30.3 0.0 4.4e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 SprT-like family WLM PF08325.5 gi|330507090|ref|YP_004383518.1| - 0.00075 19.4 0.1 0.0025 17.6 0.0 1.7 2 0 0 2 2 2 1 WLM domain CxxCxxCC PF03692.10 gi|330507091|ref|YP_004383519.1| - 0.0027 18.1 4.4 0.0036 17.7 3.1 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DJ-1_PfpI PF01965.19 gi|330507092|ref|YP_004383520.1| - 5.2e-31 107.0 0.0 8.4e-31 106.4 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|330507092|ref|YP_004383520.1| - 4.4e-22 78.1 0.0 5.5e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|330507092|ref|YP_004383520.1| - 0.015 14.9 0.0 0.029 13.9 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF2007 PF09413.5 gi|330507092|ref|YP_004383520.1| - 0.019 14.7 0.1 1.4 8.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF2007) TPR_11 PF13414.1 gi|330507093|ref|YP_004383521.1| - 2.8e-56 187.0 21.0 4.9e-19 67.7 0.3 3.2 1 1 3 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|330507093|ref|YP_004383521.1| - 2.3e-44 147.2 12.7 3.5e-11 42.1 0.1 5.1 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330507093|ref|YP_004383521.1| - 7.1e-37 122.3 11.0 7.1e-09 34.9 0.1 5.1 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330507093|ref|YP_004383521.1| - 1.2e-33 112.5 8.2 2e-08 33.7 0.0 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330507093|ref|YP_004383521.1| - 1.9e-26 92.0 4.5 1.8e-08 34.8 1.3 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330507093|ref|YP_004383521.1| - 4.7e-26 88.5 2.9 1e-05 24.9 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330507093|ref|YP_004383521.1| - 1.2e-24 86.0 4.5 4.4e-12 45.7 0.0 3.3 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330507093|ref|YP_004383521.1| - 1.2e-20 72.1 5.0 6.5e-05 23.2 0.0 5.0 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330507093|ref|YP_004383521.1| - 2.2e-18 64.5 2.2 8e-05 22.1 0.0 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330507093|ref|YP_004383521.1| - 3.4e-16 59.3 1.2 3.2e-07 30.5 0.0 2.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330507093|ref|YP_004383521.1| - 8e-14 51.0 0.8 0.078 13.4 0.0 5.3 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330507093|ref|YP_004383521.1| - 1.3e-13 50.5 0.9 1.2e-06 28.2 0.1 2.7 2 1 0 2 2 2 2 Tetratricopeptide repeat MIT PF04212.13 gi|330507093|ref|YP_004383521.1| - 4.8e-08 32.7 6.6 0.0016 18.2 0.1 4.5 4 1 1 5 5 5 2 MIT (microtubule interacting and transport) domain NARP1 PF12569.3 gi|330507093|ref|YP_004383521.1| - 8.1e-07 28.1 0.0 0.009 14.8 0.0 2.1 1 1 0 2 2 2 2 NMDA receptor-regulated protein 1 Apc3 PF12895.2 gi|330507093|ref|YP_004383521.1| - 1.1e-06 28.7 0.4 0.019 15.0 0.0 2.5 2 1 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.9 gi|330507093|ref|YP_004383521.1| - 1.2e-06 28.3 0.7 1.1 9.9 0.0 5.3 4 2 1 5 5 5 1 Tetratricopeptide repeat EST1_DNA_bind PF10373.4 gi|330507093|ref|YP_004383521.1| - 2.4e-06 27.0 2.5 0.057 12.6 0.1 3.1 2 1 1 3 3 3 2 Est1 DNA/RNA binding domain Fis1_TPR_C PF14853.1 gi|330507093|ref|YP_004383521.1| - 6.7e-06 25.8 0.1 1.6 8.6 0.0 3.5 4 0 0 4 4 3 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|330507093|ref|YP_004383521.1| - 1.1e-05 25.1 10.2 0.019 14.9 0.0 4.0 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_3 PF07720.7 gi|330507093|ref|YP_004383521.1| - 1.1e-05 25.1 2.6 0.053 13.3 0.0 4.4 5 0 0 5 5 4 1 Tetratricopeptide repeat RPN7 PF10602.4 gi|330507093|ref|YP_004383521.1| - 0.0011 18.3 1.8 1.5 8.2 0.0 3.7 2 2 2 4 4 4 1 26S proteasome subunit RPN7 TOM20_plant PF06552.7 gi|330507093|ref|YP_004383521.1| - 0.0012 18.5 0.8 0.89 9.1 0.0 3.1 2 1 1 3 3 3 1 Plant specific mitochondrial import receptor subunit TOM20 Mo-co_dimer PF03404.11 gi|330507093|ref|YP_004383521.1| - 0.0039 16.8 0.1 24 4.5 0.0 3.6 1 1 2 4 4 4 0 Mo-co oxidoreductase dimerisation domain FAT PF02259.18 gi|330507093|ref|YP_004383521.1| - 0.005 15.8 0.1 1.4 7.8 0.0 2.9 1 1 2 3 3 3 1 FAT domain PPR PF01535.15 gi|330507093|ref|YP_004383521.1| - 0.007 16.2 0.0 34 4.7 0.0 3.9 3 0 0 3 3 3 0 PPR repeat BTAD PF03704.12 gi|330507093|ref|YP_004383521.1| - 0.067 13.4 0.1 17 5.7 0.0 2.6 1 1 1 2 2 2 0 Bacterial transcriptional activator domain DUF3856 PF12968.2 gi|330507093|ref|YP_004383521.1| - 0.13 12.0 0.8 26 4.6 0.1 3.4 1 1 1 3 3 3 0 Domain of Unknown Function (DUF3856) NSF PF02071.15 gi|330507093|ref|YP_004383521.1| - 0.14 12.8 3.2 48 5.2 0.1 4.2 4 0 0 4 4 3 0 Aromatic-di-Alanine (AdAR) repeat Sel1 PF08238.7 gi|330507093|ref|YP_004383521.1| - 2.6 8.8 10.9 12 6.7 0.5 4.7 4 2 1 5 5 4 0 Sel1 repeat DUF111 PF01969.12 gi|330507095|ref|YP_004383523.1| - 5.7e-90 301.8 0.0 6.4e-90 301.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 DDE_Tnp_1 PF01609.16 gi|330507096|ref|YP_004383524.1| - 7e-11 42.0 0.7 2.5e-10 40.2 0.0 2.2 2 1 0 2 2 2 1 Transposase DDE domain Peripla_BP_2 PF01497.13 gi|330507097|ref|YP_004383525.1| - 6.3e-14 51.6 0.0 7.8e-14 51.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|330507099|ref|YP_004383527.1| - 8.1e-25 87.3 0.0 1.7e-24 86.2 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein Methyltransf_18 PF12847.2 gi|330507100|ref|YP_004383528.1| - 7.3e-13 49.0 0.0 1.3e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330507100|ref|YP_004383528.1| - 5.2e-08 32.6 0.0 8.3e-08 31.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507100|ref|YP_004383528.1| - 5e-07 30.1 0.0 1.1e-06 28.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507100|ref|YP_004383528.1| - 2.1e-06 28.0 0.0 3.7e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507100|ref|YP_004383528.1| - 2.5e-06 27.7 0.0 5.3e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330507100|ref|YP_004383528.1| - 5.2e-06 26.2 0.0 7.3e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|330507100|ref|YP_004383528.1| - 1.8e-05 23.9 0.0 2.7e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|330507100|ref|YP_004383528.1| - 3.1e-05 23.4 0.0 4.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|330507100|ref|YP_004383528.1| - 7.9e-05 21.9 0.0 0.00015 20.9 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB Cons_hypoth95 PF03602.10 gi|330507100|ref|YP_004383528.1| - 0.00033 20.1 0.0 0.00087 18.7 0.0 1.7 1 0 0 1 1 1 1 Conserved hypothetical protein 95 GidB PF02527.10 gi|330507100|ref|YP_004383528.1| - 0.00058 19.0 0.0 0.00085 18.5 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_26 PF13659.1 gi|330507100|ref|YP_004383528.1| - 0.0014 18.6 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|330507100|ref|YP_004383528.1| - 0.0017 17.9 0.0 0.0027 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|330507100|ref|YP_004383528.1| - 0.0019 17.3 0.1 0.0052 15.9 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family DREV PF05219.7 gi|330507100|ref|YP_004383528.1| - 0.0025 16.7 0.0 0.0048 15.8 0.0 1.5 2 0 0 2 2 2 1 DREV methyltransferase SAM_MT PF04445.8 gi|330507100|ref|YP_004383528.1| - 0.016 14.3 0.0 0.023 13.8 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Methyltransf_4 PF02390.12 gi|330507100|ref|YP_004383528.1| - 0.019 14.0 0.0 0.026 13.5 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_PK PF05891.7 gi|330507100|ref|YP_004383528.1| - 0.027 13.7 0.0 0.06 12.6 0.0 1.5 1 1 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Met_10 PF02475.11 gi|330507100|ref|YP_004383528.1| - 0.055 13.0 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein PrmA PF06325.8 gi|330507100|ref|YP_004383528.1| - 0.057 12.5 0.0 0.094 11.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Peripla_BP_2 PF01497.13 gi|330507101|ref|YP_004383529.1| - 7.6e-25 87.4 0.0 1.1e-24 86.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|330507102|ref|YP_004383530.1| - 1.2e-24 86.7 0.0 2.7e-24 85.6 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein EF-hand_5 PF13202.1 gi|330507102|ref|YP_004383530.1| - 0.13 11.6 3.9 0.17 11.3 0.4 2.5 2 0 0 2 2 2 0 EF hand EF-hand_1 PF00036.27 gi|330507102|ref|YP_004383530.1| - 0.41 10.0 2.7 0.9 9.0 0.4 2.4 2 0 0 2 2 2 0 EF hand ABC_tran PF00005.22 gi|330507103|ref|YP_004383531.1| - 6.9e-30 104.1 0.0 9.9e-30 103.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330507103|ref|YP_004383531.1| - 3.9e-15 56.5 0.0 3.5e-09 37.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330507103|ref|YP_004383531.1| - 1.3e-08 34.3 0.0 7.8e-08 31.8 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|330507103|ref|YP_004383531.1| - 0.00041 20.5 0.0 0.0018 18.4 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|330507103|ref|YP_004383531.1| - 0.00055 20.3 0.1 0.00096 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|330507103|ref|YP_004383531.1| - 0.0051 16.7 0.0 0.1 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|330507103|ref|YP_004383531.1| - 0.028 14.1 0.0 0.044 13.4 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_16 PF13191.1 gi|330507103|ref|YP_004383531.1| - 0.037 14.0 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|330507103|ref|YP_004383531.1| - 0.044 13.3 0.0 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|330507103|ref|YP_004383531.1| - 0.048 13.0 0.0 0.65 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|330507103|ref|YP_004383531.1| - 0.14 10.6 0.0 0.18 10.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain FecCD PF01032.13 gi|330507104|ref|YP_004383532.1| - 2.6e-95 318.8 31.5 3.3e-95 318.5 21.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|330507104|ref|YP_004383532.1| - 8.5e-08 31.7 21.5 8.5e-08 31.7 14.9 2.2 2 1 0 2 2 2 1 ABC 3 transport family DUF1049 PF06305.6 gi|330507104|ref|YP_004383532.1| - 0.014 14.8 0.5 0.014 14.8 0.4 3.6 5 0 0 5 5 5 0 Protein of unknown function (DUF1049) SBP_bac_5 PF00496.17 gi|330507105|ref|YP_004383533.1| - 5.7e-77 259.0 0.3 7.2e-77 258.7 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle UPF0066 PF01980.11 gi|330507106|ref|YP_004383534.1| - 2.3e-32 111.4 0.0 5.9e-32 110.1 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family UPF0066 Methyltransf_31 PF13847.1 gi|330507106|ref|YP_004383534.1| - 5.5e-14 52.0 0.0 9.1e-14 51.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507106|ref|YP_004383534.1| - 2.4e-12 47.1 0.0 4.1e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330507106|ref|YP_004383534.1| - 2.5e-11 43.1 0.0 4.2e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|330507106|ref|YP_004383534.1| - 8.8e-08 32.7 0.1 1.5e-07 31.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507106|ref|YP_004383534.1| - 8.6e-06 26.1 0.0 1.4e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|330507106|ref|YP_004383534.1| - 1.7e-05 24.5 0.0 2.8e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_25 PF13649.1 gi|330507106|ref|YP_004383534.1| - 5.2e-05 23.5 0.0 9e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330507106|ref|YP_004383534.1| - 6.7e-05 22.3 0.0 0.0001 21.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|330507106|ref|YP_004383534.1| - 0.00036 19.7 0.0 0.00059 19.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_26 PF13659.1 gi|330507106|ref|YP_004383534.1| - 0.017 15.1 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|330507106|ref|YP_004383534.1| - 0.024 13.7 0.0 0.038 13.0 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|330507106|ref|YP_004383534.1| - 0.03 13.8 0.0 0.085 12.3 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.14 gi|330507106|ref|YP_004383534.1| - 0.058 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase DOT1 PF08123.8 gi|330507106|ref|YP_004383534.1| - 0.16 11.2 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 FmdE PF02663.9 gi|330507107|ref|YP_004383535.1| - 9.4e-29 99.9 0.0 1.4e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|330507107|ref|YP_004383535.1| - 0.0022 17.6 0.2 0.0061 16.2 0.2 1.8 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger PadR PF03551.9 gi|330507108|ref|YP_004383536.1| - 8.5e-15 54.2 0.1 1.6e-14 53.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|330507108|ref|YP_004383536.1| - 0.00013 22.2 0.0 0.00036 20.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF3349 PF11829.3 gi|330507108|ref|YP_004383536.1| - 0.00015 22.1 0.5 0.69 10.3 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3349) PaaX PF07848.7 gi|330507108|ref|YP_004383536.1| - 0.0042 17.0 0.1 0.051 13.5 0.0 2.4 2 0 0 2 2 2 1 PaaX-like protein Penicillinase_R PF03965.11 gi|330507108|ref|YP_004383536.1| - 0.0097 15.9 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_45 PF14947.1 gi|330507108|ref|YP_004383536.1| - 0.03 14.1 0.1 0.072 12.9 0.1 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix SgrR_N PF12793.2 gi|330507108|ref|YP_004383536.1| - 0.059 13.3 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term DUF1669 PF07894.7 gi|330507108|ref|YP_004383536.1| - 0.062 12.4 0.1 0.073 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1669) DUF4364 PF14277.1 gi|330507108|ref|YP_004383536.1| - 0.099 12.2 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DDE_3 PF13358.1 gi|330507110|ref|YP_004383538.1| - 1.9e-23 82.8 0.0 2.3e-23 82.5 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease rve_3 PF13683.1 gi|330507110|ref|YP_004383538.1| - 0.015 14.8 0.4 0.14 11.6 0.0 2.4 3 0 0 3 3 3 0 Integrase core domain rve_2 PF13333.1 gi|330507110|ref|YP_004383538.1| - 0.024 14.6 0.0 0.051 13.6 0.0 1.6 1 0 0 1 1 1 0 Integrase core domain SBP_bac_5 PF00496.17 gi|330507111|ref|YP_004383539.1| - 1.1e-69 235.1 1.9 1.3e-69 234.8 1.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MatE PF01554.13 gi|330507112|ref|YP_004383540.1| - 5.1e-46 156.2 36.5 1.9e-26 92.5 9.7 2.6 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|330507112|ref|YP_004383540.1| - 2.2e-06 27.5 20.4 2.2e-06 27.5 14.2 4.9 2 2 2 4 4 4 3 Polysaccharide biosynthesis C-terminal domain Methyltransf_31 PF13847.1 gi|330507113|ref|YP_004383541.1| - 4.5e-18 65.2 0.0 5.4e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507113|ref|YP_004383541.1| - 2.9e-16 59.7 0.0 6.6e-16 58.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330507113|ref|YP_004383541.1| - 4e-14 52.2 0.0 5.7e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|330507113|ref|YP_004383541.1| - 6e-10 39.6 0.2 8e-10 39.2 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507113|ref|YP_004383541.1| - 3.2e-07 30.7 0.0 4.4e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507113|ref|YP_004383541.1| - 5.3e-07 29.9 0.0 7.7e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|330507113|ref|YP_004383541.1| - 2.8e-06 27.1 0.0 2.5e-05 24.0 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|330507113|ref|YP_004383541.1| - 4.3e-06 26.7 0.0 7.5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330507113|ref|YP_004383541.1| - 8.3e-06 25.6 0.0 1.6e-05 24.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330507113|ref|YP_004383541.1| - 5.3e-05 22.6 0.0 6.9e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|330507113|ref|YP_004383541.1| - 6.1e-05 22.1 0.0 0.00035 19.6 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.14 gi|330507113|ref|YP_004383541.1| - 0.00011 21.8 0.0 0.00023 20.7 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF938 PF06080.7 gi|330507113|ref|YP_004383541.1| - 0.002 17.7 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Fibrillarin PF01269.12 gi|330507113|ref|YP_004383541.1| - 0.0028 16.6 0.0 0.0035 16.2 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_2 PF00891.13 gi|330507113|ref|YP_004383541.1| - 0.0036 16.5 0.0 0.0048 16.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.15 gi|330507113|ref|YP_004383541.1| - 0.0074 15.3 0.0 0.017 14.2 0.0 1.5 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|330507113|ref|YP_004383541.1| - 0.011 14.8 0.0 0.016 14.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DOT1 PF08123.8 gi|330507113|ref|YP_004383541.1| - 0.03 13.6 0.0 0.057 12.7 0.0 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 FtsJ PF01728.14 gi|330507113|ref|YP_004383541.1| - 0.059 13.3 0.0 0.082 12.8 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase PadR PF03551.9 gi|330507114|ref|YP_004383542.1| - 1.8e-14 53.2 0.2 3.3e-14 52.4 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|330507114|ref|YP_004383542.1| - 0.00012 22.3 0.0 0.00027 21.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF3349 PF11829.3 gi|330507114|ref|YP_004383542.1| - 0.0031 17.8 0.0 0.67 10.4 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3349) PaaX PF07848.7 gi|330507114|ref|YP_004383542.1| - 0.029 14.3 0.0 0.068 13.1 0.0 1.7 1 1 0 1 1 1 0 PaaX-like protein HTH_45 PF14947.1 gi|330507114|ref|YP_004383542.1| - 0.038 13.8 0.0 0.084 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1669 PF07894.7 gi|330507114|ref|YP_004383542.1| - 0.063 12.4 0.0 0.086 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1669) DUF4364 PF14277.1 gi|330507114|ref|YP_004383542.1| - 0.075 12.6 0.2 0.1 12.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Aspzincin_M35 PF14521.1 gi|330507114|ref|YP_004383542.1| - 0.1 13.0 0.1 0.13 12.7 0.0 1.1 1 0 0 1 1 1 0 Lysine-specific metallo-endopeptidase Lipoprotein_6 PF01441.14 gi|330507114|ref|YP_004383542.1| - 0.11 12.3 1.1 0.23 11.2 0.8 1.5 1 1 1 2 2 2 0 Lipoprotein Tautomerase PF01361.16 gi|330507114|ref|YP_004383542.1| - 0.17 11.4 0.5 0.78 9.3 0.1 2.2 2 0 0 2 2 2 0 Tautomerase enzyme Methyltransf_2 PF00891.13 gi|330507115|ref|YP_004383543.1| - 1.8e-14 53.5 0.0 3.1e-14 52.7 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|330507115|ref|YP_004383543.1| - 7.5e-10 39.3 0.0 1.4e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507115|ref|YP_004383543.1| - 4e-07 30.4 0.0 8.3e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330507115|ref|YP_004383543.1| - 9.3e-07 28.6 0.0 1.4e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330507115|ref|YP_004383543.1| - 1.6e-05 24.5 0.0 2.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507115|ref|YP_004383543.1| - 7.7e-05 23.1 0.0 0.00013 22.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330507115|ref|YP_004383543.1| - 0.00055 19.3 0.0 0.00093 18.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_16 PF10294.4 gi|330507115|ref|YP_004383543.1| - 0.00064 19.2 0.0 0.001 18.5 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_26 PF13659.1 gi|330507115|ref|YP_004383543.1| - 0.0022 18.0 0.0 0.0048 16.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|330507115|ref|YP_004383543.1| - 0.0054 15.8 0.0 0.0078 15.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Bin3 PF06859.7 gi|330507115|ref|YP_004383543.1| - 0.15 12.0 0.0 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 Bicoid-interacting protein 3 (Bin3) Peripla_BP_2 PF01497.13 gi|330507116|ref|YP_004383544.1| - 2.8e-26 92.0 0.0 3.7e-26 91.7 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein CbiJ PF02571.9 gi|330507116|ref|YP_004383544.1| - 0.022 14.0 0.0 0.035 13.4 0.0 1.2 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK CRAL_TRIO_N PF03765.10 gi|330507116|ref|YP_004383544.1| - 0.029 14.5 0.1 0.12 12.5 0.1 2.0 2 0 0 2 2 2 0 CRAL/TRIO, N-terminal domain Plasmid_stabil PF05016.9 gi|330507118|ref|YP_004383546.1| - 7.9e-10 39.0 0.2 1.2e-09 38.3 0.1 1.3 1 0 0 1 1 1 1 Plasmid stabilisation system protein Ist1 PF03398.9 gi|330507118|ref|YP_004383546.1| - 0.018 14.4 0.1 0.028 13.8 0.1 1.3 1 0 0 1 1 1 0 Regulator of Vps4 activity in the MVB pathway TypeIII_RM_meth PF12564.3 gi|330507118|ref|YP_004383546.1| - 0.1 12.5 1.3 0.2 11.6 0.9 1.5 1 0 0 1 1 1 0 Type III restriction/modification enzyme methylation subunit Pyridoxal_deC PF00282.14 gi|330507119|ref|YP_004383547.1| - 1e-69 234.7 0.0 1.3e-69 234.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.16 gi|330507119|ref|YP_004383547.1| - 2.3e-10 40.0 0.0 3.3e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|330507119|ref|YP_004383547.1| - 2.1e-08 33.3 0.0 3.1e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|330507119|ref|YP_004383547.1| - 1.1e-05 24.5 0.0 2.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II SLA_LP_auto_ag PF05889.8 gi|330507119|ref|YP_004383547.1| - 1.9e-05 23.3 0.0 5.4e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) DegT_DnrJ_EryC1 PF01041.12 gi|330507119|ref|YP_004383547.1| - 0.015 14.3 0.0 0.023 13.7 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family RibD_C PF01872.12 gi|330507120|ref|YP_004383548.1| - 7.9e-17 61.5 0.0 1.7e-16 60.4 0.0 1.5 1 1 0 1 1 1 1 RibD C-terminal domain SpoIIE PF07228.7 gi|330507122|ref|YP_004383550.1| - 1.2e-34 119.6 0.0 1.9e-34 119.0 0.0 1.3 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Cache_1 PF02743.13 gi|330507122|ref|YP_004383550.1| - 1.7e-09 37.0 0.0 3.8e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Cache domain HAMP PF00672.20 gi|330507122|ref|YP_004383550.1| - 1.5e-08 34.6 0.5 1.5e-08 34.6 0.3 2.0 2 0 0 2 2 2 1 HAMP domain UPF0150 PF03681.10 gi|330507123|ref|YP_004383551.1| - 1.6e-18 66.0 0.0 2.2e-18 65.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|330507123|ref|YP_004383551.1| - 0.00068 19.1 0.0 0.00082 18.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) DUF4277 PF14104.1 gi|330507124|ref|YP_004383552.1| - 9.6e-40 135.3 0.0 1.9e-39 134.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) HTH_Tnp_1 PF01527.15 gi|330507125|ref|YP_004383553.1| - 9.6e-12 44.6 0.1 1.3e-11 44.2 0.1 1.4 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|330507125|ref|YP_004383553.1| - 0.00019 20.9 0.0 0.00041 19.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330507125|ref|YP_004383553.1| - 0.0016 18.3 0.0 0.0033 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|330507125|ref|YP_004383553.1| - 0.0021 18.1 0.1 0.0026 17.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|330507125|ref|YP_004383553.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain GnsAB PF08178.6 gi|330507125|ref|YP_004383553.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 GnsA/GnsB family rve PF00665.21 gi|330507126|ref|YP_004383554.1| - 1.4e-23 83.2 0.0 2.2e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330507126|ref|YP_004383554.1| - 1.6e-18 65.9 0.2 3.6e-18 64.8 0.2 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.1 gi|330507126|ref|YP_004383554.1| - 4.1e-17 61.9 0.3 1.5e-16 60.1 0.1 1.9 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.1 gi|330507126|ref|YP_004383554.1| - 3.9e-09 36.4 2.3 6.8e-09 35.6 1.1 1.8 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.1 gi|330507126|ref|YP_004383554.1| - 1.3e-06 28.4 0.4 2.1e-06 27.7 0.3 1.3 1 0 0 1 1 1 1 DDE domain HTH_Tnp_Tc3_2 PF01498.13 gi|330507126|ref|YP_004383554.1| - 0.14 12.2 0.4 0.44 10.6 0.0 1.9 2 0 0 2 2 2 0 Transposase Transposase_20 PF02371.11 gi|330507127|ref|YP_004383555.1| - 4.2e-25 87.6 0.0 6.8e-25 86.9 0.0 1.4 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family ERCC4 PF02732.10 gi|330507127|ref|YP_004383555.1| - 0.037 13.8 0.0 0.075 12.7 0.0 1.6 1 0 0 1 1 1 0 ERCC4 domain Transposase_20 PF02371.11 gi|330507128|ref|YP_004383556.1| - 3.9e-25 87.7 0.0 6.8e-25 86.9 0.0 1.4 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|330507128|ref|YP_004383556.1| - 5.2e-12 45.6 0.1 2e-11 43.7 0.0 1.9 2 0 0 2 2 2 1 Transposase ERCC4 PF02732.10 gi|330507128|ref|YP_004383556.1| - 0.036 13.8 0.0 0.076 12.7 0.0 1.7 1 0 0 1 1 1 0 ERCC4 domain DUF4164 PF13747.1 gi|330507128|ref|YP_004383556.1| - 1.2 9.3 4.0 4.8 7.3 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) DDE_Tnp_1 PF01609.16 gi|330507129|ref|YP_004383557.1| - 1.8e-05 24.4 0.0 2.5e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain rve PF00665.21 gi|330507130|ref|YP_004383558.1| - 1.4e-23 83.2 0.0 2.2e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330507130|ref|YP_004383558.1| - 1.6e-18 65.9 0.2 3.6e-18 64.8 0.2 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.1 gi|330507130|ref|YP_004383558.1| - 4.1e-17 61.9 0.3 1.5e-16 60.1 0.1 1.9 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.1 gi|330507130|ref|YP_004383558.1| - 3.9e-09 36.4 2.3 6.8e-09 35.6 1.1 1.8 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.1 gi|330507130|ref|YP_004383558.1| - 1.3e-06 28.4 0.4 2.1e-06 27.7 0.3 1.3 1 0 0 1 1 1 1 DDE domain HTH_Tnp_Tc3_2 PF01498.13 gi|330507130|ref|YP_004383558.1| - 0.14 12.2 0.4 0.44 10.6 0.0 1.9 2 0 0 2 2 2 0 Transposase HTH_Tnp_1 PF01527.15 gi|330507131|ref|YP_004383559.1| - 9.6e-12 44.6 0.1 1.3e-11 44.2 0.1 1.4 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|330507131|ref|YP_004383559.1| - 0.00019 20.9 0.0 0.00041 19.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330507131|ref|YP_004383559.1| - 0.0016 18.3 0.0 0.0033 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|330507131|ref|YP_004383559.1| - 0.0021 18.1 0.1 0.0026 17.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|330507131|ref|YP_004383559.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain GnsAB PF08178.6 gi|330507131|ref|YP_004383559.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 GnsA/GnsB family DEDD_Tnp_IS110 PF01548.12 gi|330507132|ref|YP_004383560.1| - 5.1e-28 97.5 0.0 6e-28 97.3 0.0 1.1 1 0 0 1 1 1 1 Transposase Transposase_mut PF00872.13 gi|330507133|ref|YP_004383561.1| - 2.6e-14 52.5 0.0 2.9e-14 52.4 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family DUF1614 PF07758.6 gi|330507134|ref|YP_004383562.1| - 1.7e-43 148.3 10.2 2.1e-43 148.0 7.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) Transposase_20 PF02371.11 gi|330507135|ref|YP_004383563.1| - 1.1e-25 89.5 0.1 1.9e-25 88.7 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|330507135|ref|YP_004383563.1| - 9.3e-24 83.7 0.0 1.6e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 Transposase Lectin_N PF03954.9 gi|330507135|ref|YP_004383563.1| - 0.025 13.9 0.0 0.32 10.3 0.0 2.2 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain DDE_Tnp_1 PF01609.16 gi|330507136|ref|YP_004383564.1| - 9.5e-23 80.8 0.0 1.4e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|330507136|ref|YP_004383564.1| - 0.0076 16.4 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|330507136|ref|YP_004383564.1| - 0.011 14.7 0.3 0.017 14.1 0.2 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 OrfB_IS605 PF01385.14 gi|330507138|ref|YP_004383566.1| - 1.1e-39 136.2 0.0 1.7e-39 135.5 0.0 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330507138|ref|YP_004383566.1| - 2.8e-24 84.5 0.1 6.7e-24 83.3 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330507138|ref|YP_004383566.1| - 1.7e-09 36.8 1.0 6.6e-09 34.9 0.9 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain DZR PF12773.2 gi|330507138|ref|YP_004383566.1| - 0.0044 16.8 0.3 0.0076 16.0 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330507138|ref|YP_004383566.1| - 0.055 12.6 0.1 0.1 11.8 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|330507138|ref|YP_004383566.1| - 0.078 12.7 0.4 0.28 11.0 0.3 1.9 1 0 0 1 1 1 0 Ribosomal protein L37e TF_Zn_Ribbon PF08271.7 gi|330507138|ref|YP_004383566.1| - 0.098 11.9 0.6 0.47 9.8 0.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding YhfH PF14149.1 gi|330507138|ref|YP_004383566.1| - 0.12 12.1 0.5 16 5.4 0.1 2.5 2 0 0 2 2 2 0 YhfH-like protein RecR PF02132.10 gi|330507138|ref|YP_004383566.1| - 0.52 9.7 4.8 3 7.3 0.2 2.9 2 1 1 3 3 3 0 RecR protein Eco57I PF07669.6 gi|330507139|ref|YP_004383567.1| - 3.8e-17 62.5 0.5 8.5e-17 61.4 0.4 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_26 PF13659.1 gi|330507139|ref|YP_004383567.1| - 1.2e-14 54.3 0.0 2.2e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TaqI_C PF12950.2 gi|330507139|ref|YP_004383567.1| - 1.4e-12 47.3 0.0 4.6e-12 45.7 0.0 1.8 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain N6_Mtase PF02384.11 gi|330507139|ref|YP_004383567.1| - 3.3e-12 46.1 0.1 1.5e-06 27.5 0.0 3.4 2 2 0 2 2 2 2 N-6 DNA Methylase HSDR_N PF04313.9 gi|330507139|ref|YP_004383567.1| - 1.7e-08 34.4 0.0 9.5e-06 25.4 0.0 2.5 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.13 gi|330507139|ref|YP_004383567.1| - 7.9e-05 22.3 0.0 0.013 15.1 0.0 2.6 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 HSDR_N_2 PF13588.1 gi|330507139|ref|YP_004383567.1| - 0.006 16.3 0.0 0.027 14.2 0.0 2.1 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF903 PF06004.7 gi|330507139|ref|YP_004383567.1| - 0.049 13.1 0.1 0.15 11.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF903) Methyltransf_31 PF13847.1 gi|330507139|ref|YP_004383567.1| - 0.1 12.1 0.0 3.1 7.3 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain DDE_Tnp_IS66 PF03050.9 gi|330507140|ref|YP_004383568.1| - 1.2e-54 185.3 0.2 1.7e-54 184.8 0.0 1.3 2 0 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.2 gi|330507140|ref|YP_004383568.1| - 8.8e-06 25.6 6.4 1.4e-05 24.9 3.5 2.1 1 1 1 2 2 2 1 zinc-finger binding domain of transposase IS66 DZR PF12773.2 gi|330507140|ref|YP_004383568.1| - 0.0013 18.4 1.5 0.0027 17.4 1.1 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330507140|ref|YP_004383568.1| - 0.0063 15.6 6.2 1.3 8.3 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DDE_Tnp_IS240 PF13610.1 gi|330507140|ref|YP_004383568.1| - 0.0064 16.4 0.0 0.016 15.1 0.0 1.7 1 0 0 1 1 1 1 DDE domain DUF972 PF06156.8 gi|330507140|ref|YP_004383568.1| - 0.061 13.6 1.0 0.2 11.9 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF972) DivIC PF04977.10 gi|330507140|ref|YP_004383568.1| - 0.091 12.2 1.3 0.26 10.7 0.9 1.7 1 0 0 1 1 1 0 Septum formation initiator Terminase_GpA PF05876.7 gi|330507140|ref|YP_004383568.1| - 0.14 10.4 0.9 0.22 9.8 0.6 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) GOLGA2L5 PF15070.1 gi|330507140|ref|YP_004383568.1| - 0.17 10.3 0.3 0.27 9.6 0.2 1.2 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 zinc_ribbon_2 PF13240.1 gi|330507140|ref|YP_004383568.1| - 0.5 9.9 4.5 1.6 8.3 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|330507140|ref|YP_004383568.1| - 1.3 8.7 8.6 5 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TSC22 PF01166.13 gi|330507140|ref|YP_004383568.1| - 2.6 8.0 5.9 2.7 8.0 2.3 2.4 2 1 0 2 2 2 0 TSC-22/dip/bun family DUF641 PF04859.7 gi|330507141|ref|YP_004383569.1| - 0.11 12.2 0.1 0.69 9.6 0.1 1.9 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) RNA_capsid PF03035.9 gi|330507141|ref|YP_004383569.1| - 0.15 11.8 0.1 0.17 11.6 0.1 1.0 1 0 0 1 1 1 0 Calicivirus putative RNA polymerase/capsid protein Lactamase_B_2 PF12706.2 gi|330507142|ref|YP_004383570.1| - 7.4e-13 48.4 0.0 2e-12 47.0 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|330507142|ref|YP_004383570.1| - 5.1e-10 39.0 0.1 1.5e-09 37.4 0.1 1.9 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B PF00753.22 gi|330507142|ref|YP_004383570.1| - 5.3e-06 26.2 1.8 3.7e-05 23.4 0.5 2.5 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|330507142|ref|YP_004383570.1| - 0.00099 18.8 0.0 0.0067 16.1 0.0 2.3 3 0 0 3 3 3 1 Beta-lactamase superfamily domain FrhB_FdhB_C PF04432.8 gi|330507142|ref|YP_004383570.1| - 0.041 13.2 0.0 0.093 12.1 0.0 1.6 1 1 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Mrr_cat PF04471.7 gi|330507143|ref|YP_004383571.1| - 5.2e-15 55.2 0.0 7.1e-15 54.8 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease Plasmid_stabil PF05016.9 gi|330507145|ref|YP_004383573.1| - 4.5e-08 33.3 0.4 5.1e-08 33.2 0.2 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Pea-VEAacid PF08111.6 gi|330507145|ref|YP_004383573.1| - 0.092 12.8 0.1 0.21 11.7 0.1 1.6 1 0 0 1 1 1 0 Pea-VEAacid family DUF772 PF05598.6 gi|330507149|ref|YP_004383577.1| - 1e-18 66.9 0.0 1.9e-18 66.1 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|330507149|ref|YP_004383577.1| - 2.1e-11 43.7 6.6 3.9e-10 39.6 4.6 2.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|330507149|ref|YP_004383577.1| - 1.3e-05 25.2 0.5 2.2e-05 24.4 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330507149|ref|YP_004383577.1| - 1.7e-05 24.4 0.2 5.7e-05 22.7 0.2 1.8 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|330507149|ref|YP_004383577.1| - 0.0099 15.6 0.8 0.033 13.9 0.5 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|330507149|ref|YP_004383577.1| - 0.032 14.4 1.0 0.032 14.4 0.7 2.1 2 1 0 2 2 2 0 Transposase DDE domain Transposase_mut PF00872.13 gi|330507150|ref|YP_004383578.1| - 5.8e-20 71.1 0.3 6.7e-20 70.9 0.2 1.0 1 0 0 1 1 1 1 Transposase, Mutator family Transposase_mut PF00872.13 gi|330507151|ref|YP_004383579.1| - 5.3e-76 255.6 0.1 6.3e-76 255.3 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|330507151|ref|YP_004383579.1| - 2.4e-11 43.6 0.1 5e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.12 gi|330507151|ref|YP_004383579.1| - 0.0092 15.5 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Transposase DUF772 PF05598.6 gi|330507152|ref|YP_004383580.1| - 4.3e-20 71.3 0.0 8.1e-20 70.5 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|330507152|ref|YP_004383580.1| - 2.3e-11 43.6 6.5 4.8e-10 39.3 4.5 3.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|330507152|ref|YP_004383580.1| - 1.5e-05 24.9 0.5 2.6e-05 24.2 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330507152|ref|YP_004383580.1| - 2.1e-05 24.1 0.2 6.3e-05 22.6 0.1 1.8 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_2 PF13586.1 gi|330507152|ref|YP_004383580.1| - 0.016 15.4 2.0 0.02 15.0 0.1 2.0 2 0 0 2 2 2 0 Transposase DDE domain RHH_1 PF01402.16 gi|330507153|ref|YP_004383581.1| - 0.12 12.3 0.2 0.23 11.4 0.1 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family UPF0150 PF03681.10 gi|330507154|ref|YP_004383582.1| - 2.9e-12 46.0 0.0 3.9e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) YcfA PF07927.7 gi|330507155|ref|YP_004383583.1| - 1.5e-18 66.4 0.2 2.1e-18 65.9 0.1 1.3 1 0 0 1 1 1 1 YcfA-like protein DUF3950 PF13132.1 gi|330507156|ref|YP_004383584.1| - 0.002 17.6 0.2 0.26 10.8 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3950) W_rich_C PF07483.6 gi|330507156|ref|YP_004383584.1| - 0.0038 16.8 0.5 0.74 9.5 0.1 2.3 2 0 0 2 2 2 2 Tryptophan-rich Synechocystis species C-terminal domain DDE_Tnp_1 PF01609.16 gi|330507161|ref|YP_004383589.1| - 7.7e-11 41.9 1.1 2.8e-10 40.0 0.0 2.3 2 1 0 2 2 2 1 Transposase DDE domain OrfB_IS605 PF01385.14 gi|330507163|ref|YP_004383591.1| - 3.5e-41 141.0 0.6 6.5e-41 140.1 0.0 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330507163|ref|YP_004383591.1| - 5.2e-24 83.6 0.2 2e-23 81.8 0.1 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330507163|ref|YP_004383591.1| - 4.7e-20 70.6 2.5 9.7e-20 69.6 1.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|330507163|ref|YP_004383591.1| - 0.02 14.7 0.2 0.041 13.7 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|330507163|ref|YP_004383591.1| - 0.2 11.0 0.9 1.1 8.6 0.0 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding CPSase_L_D2 PF02786.12 gi|330507164|ref|YP_004383592.1| - 9.3e-105 348.5 0.3 7.8e-71 237.7 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|330507164|ref|YP_004383592.1| - 2e-48 163.0 0.2 6e-23 81.0 0.0 3.1 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|330507164|ref|YP_004383592.1| - 2e-41 140.6 0.0 4.8e-41 139.3 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|330507164|ref|YP_004383592.1| - 2.1e-35 122.1 0.0 2.8e-17 63.0 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330507164|ref|YP_004383592.1| - 1.4e-28 99.5 0.0 5.9e-12 44.9 0.0 4.1 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|330507164|ref|YP_004383592.1| - 1.4e-19 69.8 1.9 2.6e-18 65.7 0.1 3.5 4 0 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.17 gi|330507164|ref|YP_004383592.1| - 1.1e-14 54.1 0.0 2.4e-06 27.0 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|330507164|ref|YP_004383592.1| - 1e-12 47.8 0.0 1.2e-05 24.8 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|330507164|ref|YP_004383592.1| - 2.5e-11 43.7 0.3 0.00027 20.8 0.1 2.6 2 1 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|330507164|ref|YP_004383592.1| - 2.7e-08 33.4 0.0 6.3e-05 22.5 0.0 3.3 4 0 0 4 4 4 2 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|330507164|ref|YP_004383592.1| - 5.6e-07 29.3 0.0 0.021 14.4 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|330507164|ref|YP_004383592.1| - 3.1e-05 23.3 0.1 0.29 10.3 0.0 2.8 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|330507164|ref|YP_004383592.1| - 0.0023 17.3 0.0 2.7 7.3 0.0 2.9 2 0 0 2 2 2 2 ATP-grasp domain HTH_23 PF13384.1 gi|330507164|ref|YP_004383592.1| - 0.047 13.3 0.0 2.7 7.7 0.0 3.2 3 0 0 3 3 2 0 Homeodomain-like domain HHH PF00633.18 gi|330507164|ref|YP_004383592.1| - 0.056 13.1 0.0 4.8 7.0 0.0 3.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif GATase PF00117.23 gi|330507165|ref|YP_004383593.1| - 1.4e-40 138.7 0.0 2.1e-40 138.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CPSase_sm_chain PF00988.17 gi|330507165|ref|YP_004383593.1| - 1.9e-39 134.1 0.0 2.6e-39 133.7 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain Peptidase_C26 PF07722.8 gi|330507165|ref|YP_004383593.1| - 1.9e-10 40.5 0.1 1.3e-07 31.3 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 Peripla_BP_6 PF13458.1 gi|330507165|ref|YP_004383593.1| - 0.028 13.7 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein DJ-1_PfpI PF01965.19 gi|330507165|ref|YP_004383593.1| - 0.076 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family DUF3467 PF11950.3 gi|330507166|ref|YP_004383594.1| - 3.5e-16 58.9 0.0 4.4e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) TPR_1 PF00515.23 gi|330507167|ref|YP_004383595.1| - 1.1e-24 84.9 0.2 3.5e-11 42.2 0.0 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330507167|ref|YP_004383595.1| - 1.1e-23 82.6 0.1 2.6e-15 55.7 0.2 3.1 2 1 1 3 3 3 2 TPR repeat TPR_16 PF13432.1 gi|330507167|ref|YP_004383595.1| - 3.1e-22 78.6 7.3 5e-11 42.9 0.0 3.0 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330507167|ref|YP_004383595.1| - 6e-21 72.6 0.0 3.2e-09 36.0 0.0 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330507167|ref|YP_004383595.1| - 6.7e-20 70.8 1.4 1.8e-08 34.1 0.0 3.5 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330507167|ref|YP_004383595.1| - 2.1e-14 53.0 1.1 4.4e-07 29.6 0.5 3.1 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330507167|ref|YP_004383595.1| - 3.2e-13 49.0 2.5 2.3e-06 27.7 0.1 4.3 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330507167|ref|YP_004383595.1| - 1.2e-12 47.9 4.5 3.5e-06 27.2 0.0 2.7 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330507167|ref|YP_004383595.1| - 1.5e-12 46.6 0.9 0.0001 22.2 0.1 3.6 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330507167|ref|YP_004383595.1| - 2.8e-12 45.4 0.0 6.6e-05 22.3 0.0 4.2 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330507167|ref|YP_004383595.1| - 4.3e-09 35.4 0.7 0.00019 20.9 0.0 4.0 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330507167|ref|YP_004383595.1| - 5.5e-09 35.8 0.2 0.39 11.2 0.1 3.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330507167|ref|YP_004383595.1| - 6.5e-09 35.4 5.2 0.0046 16.8 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|330507167|ref|YP_004383595.1| - 1.6e-05 24.9 0.1 0.021 14.9 0.0 2.2 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_3 PF07720.7 gi|330507167|ref|YP_004383595.1| - 2.3e-05 24.0 0.0 0.21 11.4 0.0 3.8 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|330507167|ref|YP_004383595.1| - 3.2e-05 23.9 0.7 0.46 11.0 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat PPR PF01535.15 gi|330507167|ref|YP_004383595.1| - 0.005 16.7 0.4 20 5.4 0.0 4.1 4 0 0 4 4 4 0 PPR repeat DUF3856 PF12968.2 gi|330507167|ref|YP_004383595.1| - 0.0074 16.1 0.2 1.7 8.4 0.0 2.8 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) BTAD PF03704.12 gi|330507167|ref|YP_004383595.1| - 0.028 14.7 0.2 0.59 10.4 0.0 2.4 1 1 2 3 3 3 0 Bacterial transcriptional activator domain Sel1 PF08238.7 gi|330507167|ref|YP_004383595.1| - 0.039 14.5 0.0 18 6.1 0.0 2.6 2 0 0 2 2 2 0 Sel1 repeat RPN7 PF10602.4 gi|330507167|ref|YP_004383595.1| - 0.082 12.2 0.1 10 5.4 0.0 3.0 1 1 2 3 3 3 0 26S proteasome subunit RPN7 AsnC_trans_reg PF01037.16 gi|330507168|ref|YP_004383596.1| - 5.5e-11 42.0 0.1 6.7e-11 41.7 0.1 1.0 1 0 0 1 1 1 1 AsnC family NapD PF03927.8 gi|330507168|ref|YP_004383596.1| - 0.019 14.7 0.2 0.025 14.4 0.2 1.1 1 0 0 1 1 1 0 NapD protein GYD PF08734.6 gi|330507168|ref|YP_004383596.1| - 0.019 14.6 0.0 0.021 14.5 0.0 1.1 1 0 0 1 1 1 0 GYD domain MFS_1 PF07690.11 gi|330507169|ref|YP_004383597.1| - 6.2e-59 199.4 43.6 8.7e-36 123.3 15.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|330507169|ref|YP_004383597.1| - 1.2e-08 33.8 33.4 0.0002 19.9 8.4 2.4 2 1 0 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|330507169|ref|YP_004383597.1| - 1.8e-08 33.3 29.6 1.4e-06 27.1 6.5 2.6 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|330507169|ref|YP_004383597.1| - 2.3e-08 33.7 5.6 0.0011 18.6 0.6 3.3 2 0 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.8 gi|330507169|ref|YP_004383597.1| - 9.5e-08 30.5 13.6 5e-07 28.2 0.7 2.5 2 1 0 2 2 2 2 Transmembrane secretion effector UNC-93 PF05978.11 gi|330507169|ref|YP_004383597.1| - 6.1e-07 29.0 2.3 6.1e-07 29.0 1.6 2.6 2 1 0 2 2 2 2 Ion channel regulatory protein UNC-93 ATG22 PF11700.3 gi|330507169|ref|YP_004383597.1| - 0.0019 16.7 33.4 0.039 12.4 9.3 2.8 2 2 0 2 2 2 2 Vacuole effluxer Atg22 like Nuc_H_symport PF03825.11 gi|330507169|ref|YP_004383597.1| - 0.027 13.2 22.2 0.014 14.1 5.9 2.4 2 1 0 2 2 2 0 Nucleoside H+ symporter PUCC PF03209.10 gi|330507169|ref|YP_004383597.1| - 0.041 12.6 20.4 0.13 10.9 5.4 2.3 2 0 0 2 2 2 0 PUCC protein UPF0060 PF02694.10 gi|330507169|ref|YP_004383597.1| - 0.047 13.7 6.2 0.044 13.8 1.4 2.9 2 0 0 2 2 2 0 Uncharacterised BCR, YnfA/UPF0060 family DUF2566 PF10753.4 gi|330507170|ref|YP_004383598.1| - 0.14 12.0 0.1 0.29 11.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2566) Cna_B PF05738.8 gi|330507171|ref|YP_004383599.1| - 7.9e-47 156.8 20.3 2.5e-07 30.3 0.1 7.9 7 0 0 7 7 7 6 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|330507171|ref|YP_004383599.1| - 4.8e-35 119.4 27.3 1.2e-05 25.2 1.5 8.7 7 0 0 7 7 7 6 Carboxypeptidase regulatory-like domain Y_Y_Y PF07495.8 gi|330507171|ref|YP_004383599.1| - 1.6e-27 95.0 39.3 1.7 8.4 0.4 24.1 25 0 0 25 25 25 4 Y_Y_Y domain Big_3_4 PF13754.1 gi|330507171|ref|YP_004383599.1| - 3.1e-15 56.2 190.2 0.011 16.0 0.5 27.9 28 3 0 28 28 25 12 Bacterial Ig-like domain (group 3) BiPBP_C PF06832.7 gi|330507171|ref|YP_004383599.1| - 5.1e-14 51.9 28.5 1.2 9.1 0.0 15.5 16 0 0 16 16 16 2 Penicillin-Binding Protein C-terminus Family DUF4399 PF14347.1 gi|330507171|ref|YP_004383599.1| - 2.5e-13 49.8 0.0 17 5.4 0.0 13.2 14 0 0 14 14 13 0 Domain of unknown function (DUF4399) DUF2012 PF09430.5 gi|330507171|ref|YP_004383599.1| - 7.4e-13 48.4 0.0 0.035 13.9 0.0 6.1 5 0 0 5 5 5 4 Protein of unknown function (DUF2012) Dioxygenase_C PF00775.16 gi|330507171|ref|YP_004383599.1| - 1e-08 34.6 6.0 0.1 11.8 0.0 6.3 6 0 0 6 6 6 2 Dioxygenase fn3_3 PF14686.1 gi|330507171|ref|YP_004383599.1| - 2.5e-07 30.7 26.0 0.086 12.9 0.1 9.2 9 1 0 9 9 8 3 Polysaccharide lyase family 4, domain II DUF3823 PF12866.2 gi|330507171|ref|YP_004383599.1| - 0.00017 21.1 0.8 1.9 7.9 0.0 5.0 6 0 0 6 6 6 1 Protein of unknown function (DUF3823) DUF1829 PF08862.5 gi|330507171|ref|YP_004383599.1| - 0.00039 20.6 0.0 1.5e+02 2.7 0.0 7.0 9 0 0 9 9 9 0 Domain of unknown function DUF1829 NLE PF08154.7 gi|330507171|ref|YP_004383599.1| - 0.0041 17.0 2.1 2.5e+02 1.7 0.0 8.0 9 0 0 9 9 8 0 NLE (NUC135) domain Pollen_Ole_e_I PF01190.12 gi|330507171|ref|YP_004383599.1| - 0.082 12.7 0.1 76 3.2 0.0 4.5 4 0 0 4 4 4 0 Pollen proteins Ole e I like Cadherin PF00028.12 gi|330507171|ref|YP_004383599.1| - 0.23 11.7 14.2 6.3e+02 0.7 0.0 11.2 14 0 0 14 14 11 0 Cadherin domain Enhancin PF03272.8 gi|330507171|ref|YP_004383599.1| - 1.3 6.8 0.0 2.2 6.0 0.0 1.3 1 0 0 1 1 1 0 Viral enhancin protein Fae PF08714.6 gi|330507172|ref|YP_004383600.1| - 2.3e-70 235.4 0.2 2.5e-70 235.2 0.1 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) GATase PF00117.23 gi|330507173|ref|YP_004383601.1| - 5.3e-33 114.1 0.0 6e-33 113.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|330507173|ref|YP_004383601.1| - 3.8e-12 46.1 0.3 3.8e-12 46.1 0.2 2.2 2 1 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|330507173|ref|YP_004383601.1| - 0.065 12.8 2.5 0.11 12.0 0.2 2.1 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain CxxCxxCC PF03692.10 gi|330507174|ref|YP_004383602.1| - 9.4e-13 48.4 2.5 1.7e-12 47.6 0.3 2.1 1 1 1 2 2 2 1 Putative zinc- or iron-chelating domain RNase_E_G PF10150.4 gi|330507174|ref|YP_004383602.1| - 0.12 11.5 0.1 0.61 9.2 0.0 1.9 2 0 0 2 2 2 0 Ribonuclease E/G family CTDII PF01556.13 gi|330507175|ref|YP_004383603.1| - 8e-35 118.5 0.1 1.8e-23 82.2 0.0 3.2 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|330507175|ref|YP_004383603.1| - 8.9e-28 95.8 2.3 1.4e-27 95.2 1.6 1.3 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|330507175|ref|YP_004383603.1| - 4e-16 58.8 15.6 6.6e-16 58.1 10.8 1.4 1 0 0 1 1 1 1 DnaJ central domain OrfB_Zn_ribbon PF07282.6 gi|330507175|ref|YP_004383603.1| - 3.3 7.4 8.3 0.99 9.1 0.6 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HSP70 PF00012.15 gi|330507176|ref|YP_004383604.1| - 1.5e-224 746.4 13.6 3.7e-204 679.0 6.2 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|330507176|ref|YP_004383604.1| - 6.6e-17 61.0 4.0 6.6e-17 61.0 2.8 2.6 2 1 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.11 gi|330507176|ref|YP_004383604.1| - 0.00011 21.8 0.0 0.00024 20.7 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain DUF45 PF01863.12 gi|330507176|ref|YP_004383604.1| - 1.9 8.2 4.6 3.2 7.4 2.8 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF45 Vfa1 PF08432.5 gi|330507176|ref|YP_004383604.1| - 2.6 8.0 10.7 4.2 7.3 7.4 1.3 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 GrpE PF01025.14 gi|330507177|ref|YP_004383605.1| - 1.1e-37 129.1 5.3 1.5e-37 128.7 3.7 1.1 1 0 0 1 1 1 1 GrpE IncA PF04156.9 gi|330507177|ref|YP_004383605.1| - 0.05 13.1 7.8 0.07 12.7 5.4 1.2 1 0 0 1 1 1 0 IncA protein DUF1664 PF07889.7 gi|330507177|ref|YP_004383605.1| - 0.2 11.4 1.3 0.4 10.4 0.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) E1_dh PF00676.15 gi|330507177|ref|YP_004383605.1| - 0.42 9.2 2.4 0.59 8.7 1.7 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component Cpn60_TCP1 PF00118.19 gi|330507178|ref|YP_004383606.1| - 1.2e-157 525.4 10.1 1.4e-157 525.2 7.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family ABC_tran PF00005.22 gi|330507179|ref|YP_004383607.1| - 5.4e-30 104.4 0.0 8e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330507179|ref|YP_004383607.1| - 5.9e-14 52.7 0.0 4.9e-11 43.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330507179|ref|YP_004383607.1| - 1.9e-07 30.5 0.0 3.5e-06 26.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|330507179|ref|YP_004383607.1| - 9.6e-06 25.7 0.0 8.2e-05 22.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|330507179|ref|YP_004383607.1| - 1.6e-05 24.1 0.0 2.8e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|330507179|ref|YP_004383607.1| - 0.00012 20.9 0.0 0.00017 20.4 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|330507179|ref|YP_004383607.1| - 0.0003 21.1 0.1 0.00061 20.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|330507179|ref|YP_004383607.1| - 0.00062 19.2 0.0 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|330507179|ref|YP_004383607.1| - 0.0015 17.0 0.0 0.027 12.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|330507179|ref|YP_004383607.1| - 0.003 17.5 0.0 0.0072 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|330507179|ref|YP_004383607.1| - 0.0039 17.0 0.0 0.0055 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|330507179|ref|YP_004383607.1| - 0.0097 15.6 0.0 0.028 14.1 0.0 1.9 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|330507179|ref|YP_004383607.1| - 0.015 15.4 0.0 0.29 11.3 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|330507179|ref|YP_004383607.1| - 0.018 14.1 0.3 0.091 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|330507179|ref|YP_004383607.1| - 0.025 15.3 0.1 0.057 14.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|330507179|ref|YP_004383607.1| - 0.046 13.1 0.0 0.08 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|330507179|ref|YP_004383607.1| - 0.065 13.5 0.0 0.12 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|330507179|ref|YP_004383607.1| - 0.08 12.3 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|330507179|ref|YP_004383607.1| - 0.11 12.1 0.1 0.33 10.6 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|330507179|ref|YP_004383607.1| - 0.12 12.6 0.1 0.43 10.7 0.0 2.1 1 1 1 2 2 2 0 RNA helicase Viral_helicase1 PF01443.13 gi|330507179|ref|YP_004383607.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PPV_E1_C PF00519.12 gi|330507179|ref|YP_004383607.1| - 0.14 10.7 0.0 0.29 9.7 0.0 1.4 1 0 0 1 1 1 0 Papillomavirus helicase PhoU PF01895.14 gi|330507180|ref|YP_004383608.1| - 3.2e-41 139.6 11.9 2.9e-20 72.4 2.7 2.1 2 0 0 2 2 2 2 PhoU domain DUF4618 PF15397.1 gi|330507180|ref|YP_004383608.1| - 0.014 14.7 1.0 0.043 13.1 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Hema_stalk PF08720.5 gi|330507180|ref|YP_004383608.1| - 0.071 12.6 1.1 0.097 12.1 0.8 1.3 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk IIGP PF05049.8 gi|330507180|ref|YP_004383608.1| - 0.095 11.4 1.2 0.12 11.1 0.8 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) PhoU PF01895.14 gi|330507181|ref|YP_004383609.1| - 7.2e-21 74.4 10.9 9.7e-17 61.2 1.4 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|330507181|ref|YP_004383609.1| - 2.5e-05 23.8 0.0 7e-05 22.4 0.0 1.8 1 1 1 2 2 2 1 Antidote-toxin recognition MazE Peptidase_C37 PF05416.7 gi|330507181|ref|YP_004383609.1| - 0.032 12.5 0.1 0.045 12.0 0.0 1.2 1 0 0 1 1 1 0 Southampton virus-type processing peptidase HMGL-like PF00682.14 gi|330507181|ref|YP_004383609.1| - 0.13 11.8 1.3 0.77 9.3 0.1 2.3 1 1 1 2 2 2 0 HMGL-like DNA_binding_1 PF01035.15 gi|330507182|ref|YP_004383610.1| - 1.2e-28 98.6 0.0 1.7e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Metallophos_2 PF12850.2 gi|330507183|ref|YP_004383611.1| - 9.5e-22 77.5 0.1 1.1e-21 77.2 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|330507183|ref|YP_004383611.1| - 0.15 11.4 2.0 2.3 7.5 1.4 2.2 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase T5orf172 PF10544.4 gi|330507184|ref|YP_004383612.1| - 0.078 13.3 0.2 0.098 13.0 0.2 1.2 1 0 0 1 1 1 0 T5orf172 domain SH3_6 PF12913.2 gi|330507186|ref|YP_004383614.1| - 6.5e-07 28.4 0.0 0.4 9.9 0.0 4.5 4 0 0 4 4 4 3 SH3 domain of the SH3b1 type Trypsin PF00089.21 gi|330507186|ref|YP_004383614.1| - 2.5e-06 27.2 0.0 5.1e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Trypsin Trypsin_2 PF13365.1 gi|330507186|ref|YP_004383614.1| - 0.00039 20.3 0.0 0.014 15.3 0.0 3.2 3 1 0 3 3 3 1 Trypsin-like peptidase domain PapC_C PF13953.1 gi|330507186|ref|YP_004383614.1| - 0.062 12.9 0.8 1.9 8.2 0.0 3.8 5 0 0 5 5 5 0 PapC C-terminal domain MTD PF01993.13 gi|330507187|ref|YP_004383615.1| - 1.2e-86 290.1 0.4 1.4e-86 290.0 0.3 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase CoA_transf_3 PF02515.12 gi|330507187|ref|YP_004383615.1| - 0.0039 16.4 0.0 0.011 14.9 0.0 1.7 2 0 0 2 2 2 1 CoA-transferase family III DUF2529 PF10740.4 gi|330507187|ref|YP_004383615.1| - 0.092 12.1 0.1 0.42 10.0 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2529) ABC_tran PF00005.22 gi|330507188|ref|YP_004383616.1| - 1.3e-31 109.7 0.0 1.9e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330507188|ref|YP_004383616.1| - 1.1e-10 42.0 0.0 7.2e-05 22.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA PF00004.24 gi|330507188|ref|YP_004383616.1| - 2.4e-06 27.7 0.4 2.4e-05 24.5 0.3 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|330507188|ref|YP_004383616.1| - 1.2e-05 25.4 0.0 2e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|330507188|ref|YP_004383616.1| - 0.0002 20.6 0.0 0.00028 20.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|330507188|ref|YP_004383616.1| - 0.00088 19.2 0.2 0.0048 16.8 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|330507188|ref|YP_004383616.1| - 0.0014 18.7 0.1 0.0039 17.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|330507188|ref|YP_004383616.1| - 0.0014 18.3 0.0 0.021 14.5 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|330507188|ref|YP_004383616.1| - 0.0034 18.1 0.8 0.0066 17.2 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|330507188|ref|YP_004383616.1| - 0.0083 16.4 0.0 0.014 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|330507188|ref|YP_004383616.1| - 0.0084 15.1 0.0 1.6 7.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|330507188|ref|YP_004383616.1| - 0.011 15.6 0.1 0.019 14.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|330507188|ref|YP_004383616.1| - 0.011 15.2 0.0 0.04 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|330507188|ref|YP_004383616.1| - 0.018 14.5 0.0 0.037 13.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|330507188|ref|YP_004383616.1| - 0.018 14.5 0.0 0.036 13.5 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|330507188|ref|YP_004383616.1| - 0.018 14.6 0.1 0.052 13.2 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.1 gi|330507188|ref|YP_004383616.1| - 0.023 14.4 0.1 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_18 PF13238.1 gi|330507188|ref|YP_004383616.1| - 0.025 14.8 0.1 0.12 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|330507188|ref|YP_004383616.1| - 0.027 13.6 0.1 0.062 12.5 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein SMC_N PF02463.14 gi|330507188|ref|YP_004383616.1| - 0.027 13.6 0.0 4.5 6.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.10 gi|330507188|ref|YP_004383616.1| - 0.029 13.0 0.0 0.042 12.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|330507188|ref|YP_004383616.1| - 0.035 13.6 0.0 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|330507188|ref|YP_004383616.1| - 0.036 13.7 0.0 0.087 12.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|330507188|ref|YP_004383616.1| - 0.042 13.5 0.1 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|330507188|ref|YP_004383616.1| - 0.06 12.5 0.0 0.28 10.3 0.0 2.0 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.17 gi|330507188|ref|YP_004383616.1| - 0.062 12.1 0.0 0.099 11.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|330507188|ref|YP_004383616.1| - 0.063 12.7 0.2 0.66 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain IstB_IS21 PF01695.12 gi|330507188|ref|YP_004383616.1| - 0.078 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|330507188|ref|YP_004383616.1| - 0.097 12.5 0.1 0.28 11.1 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Miro PF08477.8 gi|330507188|ref|YP_004383616.1| - 0.1 13.1 0.0 0.38 11.2 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein AAA_24 PF13479.1 gi|330507188|ref|YP_004383616.1| - 0.1 12.1 0.0 0.79 9.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|330507188|ref|YP_004383616.1| - 0.1 11.1 0.2 1.1 7.7 0.0 2.5 2 1 1 3 3 3 0 Predicted ATPase of the ABC class Fe-ADH_2 PF13685.1 gi|330507189|ref|YP_004383617.1| - 2.7e-65 220.1 0.1 3.6e-65 219.7 0.1 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|330507189|ref|YP_004383617.1| - 2.6e-21 75.6 2.5 3.5e-21 75.2 1.7 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|330507189|ref|YP_004383617.1| - 1.9e-05 23.7 0.2 6.7e-05 21.9 0.1 1.9 1 1 0 1 1 1 1 3-dehydroquinate synthase AIRC PF00731.15 gi|330507189|ref|YP_004383617.1| - 0.00059 19.1 0.3 0.0017 17.6 0.1 1.8 1 1 0 1 1 1 1 AIR carboxylase UPF0179 PF03684.8 gi|330507190|ref|YP_004383618.1| - 9.1e-51 171.1 0.4 1e-50 171.0 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) TB PF00683.12 gi|330507190|ref|YP_004383618.1| - 4.8 6.8 6.2 19 4.8 0.6 2.6 3 0 0 3 3 3 0 TB domain Radical_SAM PF04055.16 gi|330507191|ref|YP_004383619.1| - 2.7e-13 50.4 0.1 3.3e-12 46.8 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily MFS_Mycoplasma PF07672.8 gi|330507192|ref|YP_004383620.1| - 0.032 13.3 1.3 0.034 13.3 0.9 1.0 1 0 0 1 1 1 0 Mycoplasma MFS transporter Tiny_TM_bacill PF09680.5 gi|330507192|ref|YP_004383620.1| - 0.091 12.1 1.7 0.091 12.1 1.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (Tiny_TM_bacill) EMP70 PF02990.11 gi|330507192|ref|YP_004383620.1| - 0.092 11.1 2.1 0.094 11.1 1.5 1.0 1 0 0 1 1 1 0 Endomembrane protein 70 DUF3792 PF12670.2 gi|330507192|ref|YP_004383620.1| - 0.097 12.5 3.0 0.12 12.2 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) SdpI PF13630.1 gi|330507192|ref|YP_004383620.1| - 0.29 10.8 3.6 0.32 10.7 2.5 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF3675 PF12428.3 gi|330507192|ref|YP_004383620.1| - 0.47 10.7 2.3 0.6 10.3 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3675) Fun_ATP-synt_8 PF05933.8 gi|330507192|ref|YP_004383620.1| - 1 9.4 3.8 2.1 8.4 0.0 2.1 2 0 0 2 2 2 0 Fungal ATP synthase protein 8 (A6L) DUF552 PF04472.7 gi|330507193|ref|YP_004383621.1| - 7.1e-16 57.8 0.6 9.6e-16 57.4 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) zf-ZPR1 PF03367.8 gi|330507194|ref|YP_004383622.1| - 6.4e-41 139.1 0.0 7.6e-41 138.9 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain TFIIS_C PF01096.13 gi|330507194|ref|YP_004383622.1| - 4.7 6.9 5.2 33 4.2 0.0 2.7 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) UPF0052 PF01933.13 gi|330507195|ref|YP_004383623.1| - 9.2e-45 153.2 0.0 1.1e-44 152.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 DUF3245 PF11595.3 gi|330507197|ref|YP_004383625.1| - 0.12 12.5 0.0 0.14 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3245) CxxCxxCC PF03692.10 gi|330507198|ref|YP_004383626.1| - 5e-11 42.9 0.7 1.2e-10 41.7 0.5 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.3 gi|330507198|ref|YP_004383626.1| - 0.072 12.5 1.7 0.12 11.8 1.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3109) MtrH PF02007.13 gi|330507199|ref|YP_004383627.1| - 3e-122 407.2 0.6 3.4e-122 407.0 0.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit SASP PF00269.15 gi|330507199|ref|YP_004383627.1| - 0.076 12.8 0.2 0.34 10.7 0.0 2.2 3 0 0 3 3 3 0 Small, acid-soluble spore proteins, alpha/beta type MtrG PF04210.8 gi|330507200|ref|YP_004383628.1| - 1.2e-20 72.9 0.1 1.4e-20 72.7 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G MtrF PF09472.5 gi|330507201|ref|YP_004383629.1| - 6.8e-27 92.4 0.5 8.3e-27 92.2 0.4 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.9 gi|330507202|ref|YP_004383630.1| - 1.8e-74 248.9 1.5 2.3e-74 248.6 1.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|330507202|ref|YP_004383630.1| - 0.14 11.4 1.6 0.41 9.9 1.1 1.8 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrB PF05440.7 gi|330507203|ref|YP_004383631.1| - 1.8e-24 85.5 0.0 2.3e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrC PF04211.8 gi|330507204|ref|YP_004383632.1| - 8.1e-78 261.0 25.1 9.8e-78 260.8 17.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C TauE PF01925.14 gi|330507204|ref|YP_004383632.1| - 0.038 13.4 35.9 2.3 7.6 4.5 2.7 1 1 1 2 2 2 0 Sulfite exporter TauE/SafE DUF4534 PF15049.1 gi|330507204|ref|YP_004383632.1| - 0.038 13.6 0.2 0.092 12.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4534) NDUF_C2 PF06374.6 gi|330507204|ref|YP_004383632.1| - 0.23 11.4 0.7 12 5.9 0.1 2.6 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) DUF697 PF05128.7 gi|330507204|ref|YP_004383632.1| - 0.66 9.4 6.7 5.8 6.3 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF697) MtrD PF04207.7 gi|330507205|ref|YP_004383633.1| - 1.2e-87 292.9 26.7 1.5e-87 292.6 18.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrE PF04206.7 gi|330507206|ref|YP_004383634.1| - 8.6e-108 359.4 8.3 9.8e-108 359.2 5.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E Phage_holin_3 PF05106.7 gi|330507206|ref|YP_004383634.1| - 0.013 15.4 0.2 1 9.3 0.0 2.8 3 0 0 3 3 3 0 Phage holin family (Lysis protein S) DUF1965 PF09248.5 gi|330507206|ref|YP_004383634.1| - 0.029 14.2 0.1 0.064 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1965) DUF2721 PF11026.3 gi|330507206|ref|YP_004383634.1| - 0.14 11.7 2.0 0.35 10.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) DUF308 PF03729.8 gi|330507206|ref|YP_004383634.1| - 6.1 6.9 12.2 0.31 11.0 0.7 3.7 4 1 0 4 4 4 0 Short repeat of unknown function (DUF308) Oxidored_q2 PF00420.19 gi|330507206|ref|YP_004383634.1| - 9.4 5.9 10.1 5.7 6.6 0.4 2.7 3 0 0 3 3 3 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF46 PF01864.12 gi|330507207|ref|YP_004383635.1| - 3.3e-53 180.1 7.5 3.6e-53 180.0 5.2 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|330507207|ref|YP_004383635.1| - 4.7e-07 29.7 0.3 4.7e-07 29.7 0.2 2.3 3 0 0 3 3 3 1 Cytidylyltransferase family DUF3084 PF11283.3 gi|330507207|ref|YP_004383635.1| - 0.11 12.3 0.8 0.51 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3084) BioY PF02632.9 gi|330507207|ref|YP_004383635.1| - 0.22 11.1 6.4 0.37 10.4 4.4 1.4 1 0 0 1 1 1 0 BioY family MFS_2 PF13347.1 gi|330507207|ref|YP_004383635.1| - 0.27 9.5 5.5 0.31 9.3 3.8 1.2 1 0 0 1 1 1 0 MFS/sugar transport protein HTH_19 PF12844.2 gi|330507209|ref|YP_004383637.1| - 1.7e-10 40.7 0.4 5.1e-10 39.2 0.0 2.0 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|330507209|ref|YP_004383637.1| - 5.5e-09 35.7 0.0 1.2e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|330507209|ref|YP_004383637.1| - 1e-06 28.8 0.0 2.1e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|330507209|ref|YP_004383637.1| - 0.011 15.3 0.0 0.049 13.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|330507209|ref|YP_004383637.1| - 0.035 14.3 0.2 0.11 12.7 0.0 1.9 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.1 gi|330507209|ref|YP_004383637.1| - 0.058 13.2 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|330507209|ref|YP_004383637.1| - 0.061 13.0 0.0 3.2 7.5 0.0 2.8 3 0 0 3 3 3 0 MarR family HTH_24 PF13412.1 gi|330507209|ref|YP_004383637.1| - 0.064 12.6 0.0 0.24 10.8 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding NUMOD1 PF07453.8 gi|330507209|ref|YP_004383637.1| - 0.11 12.3 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain HTH_5 PF01022.15 gi|330507209|ref|YP_004383637.1| - 0.22 11.2 1.4 0.51 10.0 0.0 2.3 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family ACP_syn_III_C PF08541.5 gi|330507210|ref|YP_004383638.1| - 1e-08 35.0 0.0 2e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|330507210|ref|YP_004383638.1| - 5.7e-06 26.0 0.0 5.4e-05 22.8 0.0 2.2 2 1 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|330507210|ref|YP_004383638.1| - 0.42 10.3 4.9 0.15 11.7 1.1 1.9 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_C PF02803.13 gi|330507211|ref|YP_004383639.1| - 7e-11 41.6 0.5 2.2e-10 40.0 0.3 1.9 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|330507211|ref|YP_004383639.1| - 1.5e-10 40.5 3.1 5e-10 38.7 0.8 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|330507211|ref|YP_004383639.1| - 1.1e-06 28.2 9.1 1.4e-06 27.9 4.0 2.5 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.6 gi|330507211|ref|YP_004383639.1| - 0.0046 15.4 0.1 0.0088 14.5 0.1 1.4 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) ACP_syn_III PF08545.5 gi|330507211|ref|YP_004383639.1| - 0.022 14.4 1.9 0.98 9.1 0.6 2.6 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|330507211|ref|YP_004383639.1| - 2.3 8.0 6.3 1.1 9.1 0.0 3.2 4 0 0 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|330507212|ref|YP_004383640.1| - 1e-19 70.4 0.0 1.5e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|330507212|ref|YP_004383640.1| - 1.2e-09 37.8 2.4 2.1e-09 37.0 1.7 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|330507212|ref|YP_004383640.1| - 0.081 12.7 1.2 0.17 11.7 0.8 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-CCHC_5 PF14787.1 gi|330507212|ref|YP_004383640.1| - 0.1 12.0 0.9 0.1 12.0 0.6 2.8 4 0 0 4 4 4 0 GAG-polyprotein viral zinc-finger Laminin_EGF PF00053.19 gi|330507212|ref|YP_004383640.1| - 0.16 11.9 2.0 0.49 10.3 1.4 1.7 1 1 0 1 1 1 0 Laminin EGF-like (Domains III and V) Auto_anti-p27 PF06677.7 gi|330507212|ref|YP_004383640.1| - 0.22 11.3 1.8 0.53 10.0 1.2 1.6 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Spore_III_AF PF09581.5 gi|330507214|ref|YP_004383642.1| - 5.4 6.8 6.8 19 5.0 2.4 2.2 2 0 0 2 2 2 0 Stage III sporulation protein AF (Spore_III_AF) DUF1616 PF07760.6 gi|330507215|ref|YP_004383643.1| - 2.4e-98 328.8 5.3 3.1e-98 328.4 3.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) UPF0104 PF03706.8 gi|330507215|ref|YP_004383643.1| - 0.0054 16.0 4.5 0.0054 16.0 3.1 2.1 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0104) DUF4064 PF13273.1 gi|330507215|ref|YP_004383643.1| - 0.038 14.1 0.3 0.038 14.1 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) dCMP_cyt_deam_1 PF00383.17 gi|330507217|ref|YP_004383645.1| - 1e-12 47.5 0.1 1.8e-12 46.7 0.1 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|330507217|ref|YP_004383645.1| - 0.14 11.7 0.4 0.26 10.9 0.3 1.4 1 0 0 1 1 1 0 APOBEC-like N-terminal domain Lactonase PF10282.4 gi|330507218|ref|YP_004383646.1| - 1.8e-10 40.4 0.1 0.0048 16.0 0.0 3.9 1 1 1 3 3 3 3 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.11 gi|330507218|ref|YP_004383646.1| - 4.7e-09 35.0 0.3 0.0024 16.2 0.0 2.7 1 1 1 2 2 2 2 Cytochrome D1 heme domain Arylesterase PF01731.15 gi|330507218|ref|YP_004383646.1| - 6.1e-07 29.3 1.3 1 9.3 0.0 4.8 3 2 1 5 5 5 2 Arylesterase SGL PF08450.7 gi|330507218|ref|YP_004383646.1| - 7.2e-07 28.8 0.2 0.18 11.1 0.0 4.2 1 1 3 4 4 4 3 SMP-30/Gluconolaconase/LRE-like region NHL PF01436.16 gi|330507218|ref|YP_004383646.1| - 0.00033 20.4 2.5 19 5.4 0.0 5.3 6 0 0 6 6 6 1 NHL repeat PD40 PF07676.7 gi|330507218|ref|YP_004383646.1| - 0.031 13.9 0.2 17 5.1 0.0 3.8 4 0 0 4 4 4 0 WD40-like Beta Propeller Repeat SBP56 PF05694.6 gi|330507218|ref|YP_004383646.1| - 0.094 11.1 0.0 0.84 8.0 0.0 2.1 2 0 0 2 2 2 0 56kDa selenium binding protein (SBP56) VWA_2 PF13519.1 gi|330507219|ref|YP_004383647.1| - 0.0029 17.7 0.0 0.0053 16.8 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain GXGXG PF01493.14 gi|330507220|ref|YP_004383648.1| - 3.6e-25 88.1 21.8 1.4e-16 60.1 4.7 2.6 1 1 0 2 2 2 2 GXGXG motif AAA_3 PF07726.6 gi|330507221|ref|YP_004383649.1| - 3.3e-05 23.5 0.0 0.00021 20.8 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|330507221|ref|YP_004383649.1| - 0.095 12.4 0.0 0.26 11.0 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain Radical_SAM PF04055.16 gi|330507222|ref|YP_004383650.1| - 3.5e-11 43.5 0.0 4.1e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily DUF433 PF04255.9 gi|330507222|ref|YP_004383650.1| - 0.092 12.1 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF433) DNA_gyraseB PF00204.20 gi|330507223|ref|YP_004383651.1| - 9.6e-62 207.2 0.2 1.4e-61 206.6 0.1 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|330507223|ref|YP_004383651.1| - 3.5e-30 103.5 0.2 1e-29 102.0 0.1 1.9 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|330507223|ref|YP_004383651.1| - 6.7e-25 86.9 0.1 1.8e-24 85.5 0.0 1.8 2 0 0 2 2 2 1 Toprim domain HATPase_c PF02518.21 gi|330507223|ref|YP_004383651.1| - 4e-19 68.3 0.3 1e-18 67.0 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|330507223|ref|YP_004383651.1| - 0.00038 20.1 0.0 0.00094 18.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.1 gi|330507223|ref|YP_004383651.1| - 0.02 14.8 0.0 0.085 12.8 0.0 2.0 1 1 0 1 1 1 0 Toprim domain DNA_topoisoIV PF00521.15 gi|330507224|ref|YP_004383652.1| - 2.2e-158 527.6 0.1 2.7e-158 527.2 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|330507224|ref|YP_004383652.1| - 1.8e-62 206.4 12.7 5.8e-13 47.9 0.2 6.5 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DEAD PF00270.24 gi|330507225|ref|YP_004383653.1| - 2.9e-22 78.9 0.0 8e-22 77.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|330507225|ref|YP_004383653.1| - 0.00063 19.6 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|330507225|ref|YP_004383653.1| - 0.024 14.5 0.0 0.062 13.1 0.0 1.7 1 0 0 1 1 1 0 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|330507225|ref|YP_004383653.1| - 0.11 11.2 0.0 0.21 10.3 0.0 1.4 1 0 0 1 1 1 0 SNF2 family N-terminal domain DUF3634 PF12321.3 gi|330507225|ref|YP_004383653.1| - 0.16 11.9 0.0 0.96 9.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3634) DUF1837 PF08878.6 gi|330507226|ref|YP_004383654.1| - 6.2e-15 55.4 0.0 8.6e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1837) PIN PF01850.16 gi|330507227|ref|YP_004383655.1| - 3.6e-23 82.1 0.2 4.4e-23 81.9 0.1 1.1 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.11 gi|330507228|ref|YP_004383656.1| - 4.9e-18 64.9 1.4 5.6e-18 64.7 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF22 PF01629.11 gi|330507228|ref|YP_004383656.1| - 0.037 13.5 0.1 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF22 TPP_enzyme_C PF02775.16 gi|330507229|ref|YP_004383657.1| - 5.3e-25 87.7 0.0 9.1e-25 87.0 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|330507229|ref|YP_004383657.1| - 6e-14 52.0 0.2 1.4e-13 50.8 0.1 1.6 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|330507229|ref|YP_004383657.1| - 9.8e-07 28.1 2.8 9.8e-07 28.1 1.9 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330507229|ref|YP_004383657.1| - 3.3e-05 23.5 1.4 3.3e-05 23.5 1.0 2.7 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330507229|ref|YP_004383657.1| - 9.3e-05 22.1 9.3 0.00028 20.6 6.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330507229|ref|YP_004383657.1| - 0.0002 21.0 10.6 0.00098 18.9 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330507229|ref|YP_004383657.1| - 0.00025 20.8 11.5 0.012 15.3 1.8 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330507229|ref|YP_004383657.1| - 0.00091 19.5 9.6 0.0037 17.6 6.7 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.13 gi|330507229|ref|YP_004383657.1| - 0.045 13.2 0.3 0.097 12.1 0.0 1.7 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_15 PF13459.1 gi|330507229|ref|YP_004383657.1| - 0.055 14.0 0.6 0.055 14.0 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|330507229|ref|YP_004383657.1| - 0.077 13.0 8.3 0.21 11.6 5.7 1.8 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330507229|ref|YP_004383657.1| - 0.12 12.7 11.5 0.4 10.9 7.6 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain DXP_synthase_N PF13292.1 gi|330507229|ref|YP_004383657.1| - 0.12 11.2 0.1 0.2 10.5 0.1 1.2 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_4 PF12800.2 gi|330507229|ref|YP_004383657.1| - 0.18 12.2 11.1 0.068 13.5 1.6 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330507229|ref|YP_004383657.1| - 1.5 9.2 12.2 0.49 10.7 1.7 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330507229|ref|YP_004383657.1| - 7.1 7.4 10.1 0.14 12.8 1.2 2.2 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain POR PF01558.13 gi|330507230|ref|YP_004383658.1| - 2.7e-38 131.5 0.0 3.3e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase AMP-binding_C_2 PF14535.1 gi|330507231|ref|YP_004383659.1| - 1.5e-19 69.8 0.0 3e-19 68.8 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|330507231|ref|YP_004383659.1| - 1.6e-16 59.7 0.0 2.3e-16 59.2 0.0 1.3 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|330507231|ref|YP_004383659.1| - 4.6e-07 28.8 0.0 0.0013 17.4 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE ABC_tran PF00005.22 gi|330507233|ref|YP_004383661.1| - 9e-33 113.4 0.0 1.3e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330507233|ref|YP_004383661.1| - 1.3e-10 41.7 0.0 3.2e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|330507233|ref|YP_004383661.1| - 2e-06 27.9 0.0 2.8e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|330507233|ref|YP_004383661.1| - 6.1e-06 25.6 1.2 8e-05 21.9 0.8 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|330507233|ref|YP_004383661.1| - 1.9e-05 24.7 1.3 0.00043 20.4 0.9 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|330507233|ref|YP_004383661.1| - 2.1e-05 23.8 0.4 0.028 13.4 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|330507233|ref|YP_004383661.1| - 8.9e-05 21.9 0.0 0.00018 20.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|330507233|ref|YP_004383661.1| - 0.00072 19.9 0.1 0.0013 19.1 0.1 1.3 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|330507233|ref|YP_004383661.1| - 0.0016 17.6 0.1 0.013 14.6 0.0 2.3 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.4 gi|330507233|ref|YP_004383661.1| - 0.002 16.8 0.3 0.12 10.9 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA PF00004.24 gi|330507233|ref|YP_004383661.1| - 0.0021 18.2 0.1 0.038 14.1 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|330507233|ref|YP_004383661.1| - 0.0034 17.1 0.0 0.0073 16.0 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DELLA PF12041.3 gi|330507233|ref|YP_004383661.1| - 0.0042 16.7 0.5 0.6 9.7 0.0 2.6 2 0 0 2 2 2 1 Transcriptional regulator DELLA protein N terminal Rad17 PF03215.10 gi|330507233|ref|YP_004383661.1| - 0.0044 15.7 0.0 0.0051 15.5 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_5 PF07728.9 gi|330507233|ref|YP_004383661.1| - 0.0045 16.7 0.1 0.1 12.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|330507233|ref|YP_004383661.1| - 0.0071 16.2 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|330507233|ref|YP_004383661.1| - 0.0083 16.0 0.1 0.11 12.3 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit G-alpha PF00503.15 gi|330507233|ref|YP_004383661.1| - 0.017 13.8 0.0 0.02 13.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit UPF0079 PF02367.12 gi|330507233|ref|YP_004383661.1| - 0.017 14.7 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|330507233|ref|YP_004383661.1| - 0.018 13.9 0.4 0.14 11.0 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_19 PF13245.1 gi|330507233|ref|YP_004383661.1| - 0.019 14.7 0.0 0.045 13.5 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|330507233|ref|YP_004383661.1| - 0.019 14.8 0.0 0.12 12.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|330507233|ref|YP_004383661.1| - 0.019 13.4 0.0 0.033 12.6 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein DUF258 PF03193.11 gi|330507233|ref|YP_004383661.1| - 0.038 13.1 0.1 0.055 12.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|330507233|ref|YP_004383661.1| - 0.039 13.6 0.0 0.049 13.3 0.0 1.3 1 1 0 1 1 1 0 Archaeal ATPase SRP54 PF00448.17 gi|330507233|ref|YP_004383661.1| - 0.04 13.3 0.0 0.071 12.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF2004 PF09406.5 gi|330507233|ref|YP_004383661.1| - 0.046 13.7 0.1 0.16 12.0 0.0 1.9 3 0 0 3 3 1 0 Protein of unknown function (DUF2004) AAA_30 PF13604.1 gi|330507233|ref|YP_004383661.1| - 0.059 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|330507233|ref|YP_004383661.1| - 0.082 12.6 0.1 0.38 10.4 0.0 2.0 2 0 0 2 2 2 0 NTPase NACHT PF05729.7 gi|330507233|ref|YP_004383661.1| - 0.1 12.2 0.5 0.34 10.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.7 gi|330507233|ref|YP_004383661.1| - 0.12 11.4 0.1 0.44 9.6 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin MS_channel PF00924.13 gi|330507234|ref|YP_004383662.1| - 1.1e-46 158.7 0.1 1.1e-46 158.7 0.1 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel EI24 PF07264.6 gi|330507234|ref|YP_004383662.1| - 0.0034 16.8 1.5 0.0048 16.3 1.1 1.2 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) Glyoxalase_2 PF12681.2 gi|330507235|ref|YP_004383663.1| - 3.1e-13 50.2 0.0 3.5e-13 50.1 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|330507235|ref|YP_004383663.1| - 0.00056 19.8 0.0 0.0012 18.8 0.0 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PAP2 PF01569.16 gi|330507236|ref|YP_004383664.1| - 1.6e-22 79.5 3.7 1.6e-22 79.5 2.6 2.3 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|330507236|ref|YP_004383664.1| - 0.19 11.2 2.3 0.42 10.0 0.5 2.1 2 0 0 2 2 2 0 PAP2 superfamily CO_deh_flav_C PF03450.12 gi|330507237|ref|YP_004383665.1| - 0.14 12.0 0.2 0.26 11.2 0.1 1.4 1 0 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain Methyltransf_26 PF13659.1 gi|330507238|ref|YP_004383666.1| - 2.9e-17 62.7 0.0 9.2e-17 61.1 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|330507238|ref|YP_004383666.1| - 8.6e-17 61.4 0.0 2.2e-16 60.0 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase TaqI_C PF12950.2 gi|330507238|ref|YP_004383666.1| - 1.5e-16 60.2 0.0 4.3e-16 58.7 0.0 1.9 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain N6_Mtase PF02384.11 gi|330507238|ref|YP_004383666.1| - 3.6e-12 46.0 0.0 5.2e-08 32.3 0.0 2.8 2 1 0 2 2 2 2 N-6 DNA Methylase UPF0020 PF01170.13 gi|330507238|ref|YP_004383666.1| - 0.0005 19.6 0.0 0.019 14.5 0.0 2.4 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 PIN PF01850.16 gi|330507239|ref|YP_004383667.1| - 2.7e-06 27.7 0.1 3.5e-06 27.3 0.1 1.5 1 1 0 1 1 1 1 PIN domain T4_Gp59_C PF08994.5 gi|330507241|ref|YP_004383669.1| - 0.012 15.7 0.5 0.58 10.3 0.1 2.3 2 1 0 2 2 2 0 T4 gene Gp59 loader of gp41 DNA helicase C-term Myb_DNA-bind_4 PF13837.1 gi|330507241|ref|YP_004383669.1| - 0.016 15.3 0.1 0.029 14.4 0.1 1.4 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain DUF3201 PF11447.3 gi|330507241|ref|YP_004383669.1| - 0.029 13.7 0.1 0.046 13.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3201) RNB PF00773.14 gi|330507242|ref|YP_004383670.1| - 9.5e-68 228.8 0.0 1.1e-67 228.6 0.0 1.1 1 0 0 1 1 1 1 RNB domain S1 PF00575.18 gi|330507242|ref|YP_004383670.1| - 0.05 13.7 0.3 0.85 9.7 0.1 2.8 2 1 0 2 2 2 0 S1 RNA binding domain TM2 PF05154.11 gi|330507243|ref|YP_004383671.1| - 2.2e-07 30.9 5.4 3e-07 30.5 3.7 1.2 1 0 0 1 1 1 1 TM2 domain Lon_C PF05362.8 gi|330507244|ref|YP_004383672.1| - 6.6e-06 25.5 0.0 1.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|330507244|ref|YP_004383672.1| - 0.0048 16.3 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase OrfB_Zn_ribbon PF07282.6 gi|330507246|ref|YP_004383674.1| - 9e-23 79.7 0.0 2.5e-22 78.2 0.0 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330507246|ref|YP_004383674.1| - 1.7e-14 53.7 0.1 2.5e-14 53.2 0.1 1.3 1 0 0 1 1 1 1 Probable transposase TF_Zn_Ribbon PF08271.7 gi|330507246|ref|YP_004383674.1| - 0.0018 17.5 2.8 0.024 13.9 2.1 2.2 1 1 1 2 2 2 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|330507246|ref|YP_004383674.1| - 0.0022 17.7 2.7 0.0049 16.6 1.8 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DZR PF12773.2 gi|330507246|ref|YP_004383674.1| - 0.0046 16.7 0.9 0.01 15.6 0.6 1.5 1 0 0 1 1 1 1 Double zinc ribbon IBR PF01485.16 gi|330507246|ref|YP_004383674.1| - 0.039 13.8 0.1 0.094 12.6 0.1 1.6 1 0 0 1 1 1 0 IBR domain zf-Mss51 PF13824.1 gi|330507246|ref|YP_004383674.1| - 0.28 11.0 1.7 1.1 9.2 1.2 2.0 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 UPF0547 PF10571.4 gi|330507246|ref|YP_004383674.1| - 0.71 9.6 3.5 1.5 8.6 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|330507246|ref|YP_004383674.1| - 0.8 9.0 5.7 3.4 6.9 3.9 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|330507246|ref|YP_004383674.1| - 0.93 9.6 4.3 13 6.0 0.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|330507246|ref|YP_004383674.1| - 4.2 7.3 6.1 23 5.0 0.3 2.4 1 1 0 2 2 2 0 Zinc ribbon domain Flavodoxin_2 PF02525.12 gi|330507247|ref|YP_004383675.1| - 3.7e-33 114.7 0.0 4.2e-33 114.5 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|330507247|ref|YP_004383675.1| - 7.7e-11 41.7 0.0 1e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|330507247|ref|YP_004383675.1| - 0.013 14.8 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin HTH_20 PF12840.2 gi|330507248|ref|YP_004383676.1| - 1.7e-09 37.3 0.2 8.9e-09 35.0 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|330507248|ref|YP_004383676.1| - 7.2e-06 25.5 0.0 3.7e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|330507248|ref|YP_004383676.1| - 0.00087 19.2 0.0 0.0018 18.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|330507248|ref|YP_004383676.1| - 0.0024 17.1 0.1 0.005 16.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|330507248|ref|YP_004383676.1| - 0.032 14.0 0.1 0.076 12.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix Sulfolobus_pRN PF05584.6 gi|330507248|ref|YP_004383676.1| - 0.1 12.5 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein MTH865 PF07747.6 gi|330507249|ref|YP_004383677.1| - 6.8e-32 108.9 0.2 7.5e-32 108.7 0.2 1.0 1 0 0 1 1 1 1 MTH865-like family STT3 PF02516.9 gi|330507250|ref|YP_004383678.1| - 8.6e-32 110.7 38.1 2.2e-31 109.3 26.4 1.7 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|330507250|ref|YP_004383678.1| - 1.4e-12 47.7 16.2 1.4e-12 47.7 11.2 3.9 2 2 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF1929 PF09118.6 gi|330507250|ref|YP_004383678.1| - 0.029 14.4 0.1 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1929) 7TMR-DISM_7TM PF07695.6 gi|330507250|ref|YP_004383678.1| - 0.27 10.8 48.7 0.012 15.3 11.0 3.6 3 1 0 3 3 3 0 7TM diverse intracellular signalling NPCBM_assoc PF10633.4 gi|330507252|ref|YP_004383680.1| - 0.00096 19.1 2.0 0.0057 16.6 0.5 2.7 2 1 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|330507252|ref|YP_004383680.1| - 0.021 14.8 0.2 0.085 12.9 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function DUF11 He_PIG PF05345.7 gi|330507252|ref|YP_004383680.1| - 0.073 13.1 3.5 13 5.9 0.0 3.5 3 1 0 3 3 3 0 Putative Ig domain DUF128 PF01995.11 gi|330507259|ref|YP_004383687.1| - 7.8e-78 260.6 0.0 9.6e-78 260.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|330507259|ref|YP_004383687.1| - 9e-22 76.5 0.2 1.9e-21 75.5 0.2 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.14 gi|330507259|ref|YP_004383687.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e Ribosomal_S6e PF01092.14 gi|330507260|ref|YP_004383688.1| - 1.2e-34 118.7 0.6 1.3e-34 118.5 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e FAD_binding_3 PF01494.14 gi|330507261|ref|YP_004383689.1| - 3.1e-11 42.9 0.1 1.1e-10 41.1 0.1 1.8 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|330507261|ref|YP_004383689.1| - 3e-06 26.4 0.0 6e-06 25.4 0.0 1.4 1 1 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.19 gi|330507261|ref|YP_004383689.1| - 2.7e-05 23.2 6.8 0.014 14.2 0.3 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|330507261|ref|YP_004383689.1| - 0.00019 21.3 1.2 0.00019 21.3 0.0 1.6 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|330507261|ref|YP_004383689.1| - 0.0002 21.2 0.6 0.00093 19.1 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|330507261|ref|YP_004383689.1| - 0.00023 19.7 0.3 0.0004 18.9 0.2 1.4 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|330507261|ref|YP_004383689.1| - 0.0006 18.9 0.0 0.0014 17.7 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.9 gi|330507261|ref|YP_004383689.1| - 0.00063 18.4 0.3 0.6 8.6 0.1 2.5 3 0 0 3 3 3 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|330507261|ref|YP_004383689.1| - 0.00078 18.3 3.2 0.017 14.0 0.5 2.4 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|330507261|ref|YP_004383689.1| - 0.0015 17.7 3.0 0.0026 16.9 1.9 1.6 1 1 1 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|330507261|ref|YP_004383689.1| - 0.0076 16.3 0.2 0.16 12.0 0.2 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|330507261|ref|YP_004383689.1| - 0.019 13.8 0.4 0.031 13.1 0.3 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|330507261|ref|YP_004383689.1| - 0.08 12.5 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SSF PF00474.12 gi|330507262|ref|YP_004383690.1| - 2.5e-29 102.1 33.1 3.2e-29 101.8 23.0 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family ILVD_EDD PF00920.16 gi|330507263|ref|YP_004383691.1| - 3.1e-205 682.5 1.8 3.5e-205 682.3 1.2 1.0 1 0 0 1 1 1 1 Dehydratase family LigT_PEase PF02834.11 gi|330507264|ref|YP_004383692.1| - 4e-29 100.4 0.1 2.5e-15 56.1 0.1 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|330507264|ref|YP_004383692.1| - 1e-14 54.5 0.0 1.2e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|330507264|ref|YP_004383692.1| - 6.2e-05 22.7 0.0 7e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain tRNA_NucTransf2 PF09249.6 gi|330507265|ref|YP_004383693.1| - 1.3e-42 144.2 0.0 2.1e-42 143.6 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|330507265|ref|YP_004383693.1| - 5.1e-12 45.9 0.0 1.5e-11 44.4 0.0 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.14 gi|330507266|ref|YP_004383694.1| - 9.9e-92 307.5 0.0 1.2e-91 307.3 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain S-layer PF07752.6 gi|330507267|ref|YP_004383695.1| - 2.3e-126 420.3 37.2 1.3e-64 217.9 9.0 2.6 2 1 0 2 2 2 2 S-layer protein tRNA-synt_1g PF09334.6 gi|330507267|ref|YP_004383695.1| - 0.00081 18.1 0.1 0.87 8.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) PrcB_C PF14343.1 gi|330507267|ref|YP_004383695.1| - 0.017 14.8 4.5 3.8 7.2 0.1 3.5 3 2 0 3 3 3 0 PrcB C-terminal DUF883 PF05957.8 gi|330507267|ref|YP_004383695.1| - 0.23 11.8 5.6 0.54 10.6 3.9 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) DUF1771 PF08590.5 gi|330507267|ref|YP_004383695.1| - 0.26 11.3 8.0 0.48 10.4 5.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) DUF2502 PF10697.4 gi|330507267|ref|YP_004383695.1| - 0.47 10.5 2.4 21 5.3 0.0 3.0 4 0 0 4 4 4 0 Protein of unknown function (DUF2502) Dr_adhesin PF12393.3 gi|330507267|ref|YP_004383695.1| - 4.8 7.4 8.0 16 5.7 5.5 2.0 1 0 0 1 1 1 0 Dr family adhesin Radical_SAM PF04055.16 gi|330507268|ref|YP_004383696.1| - 2e-17 63.8 0.0 4.5e-17 62.7 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330507268|ref|YP_004383696.1| - 0.0013 18.8 0.0 0.0035 17.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.2 gi|330507268|ref|YP_004383696.1| - 0.0038 16.9 0.1 0.0038 16.9 0.0 2.6 3 0 0 3 3 3 1 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|330507268|ref|YP_004383696.1| - 0.065 13.0 0.3 1.2 9.0 0.0 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|330507268|ref|YP_004383696.1| - 0.39 10.4 0.1 0.39 10.4 0.1 2.4 3 0 0 3 3 3 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|330507268|ref|YP_004383696.1| - 0.65 9.3 6.4 0.71 9.2 0.1 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|330507268|ref|YP_004383696.1| - 2.2 8.0 9.1 2.2 8.0 0.0 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|330507268|ref|YP_004383696.1| - 4.9 6.4 9.1 7.9 5.8 0.3 3.2 4 0 0 4 4 4 0 zinc-ribbon domain DHBP_synthase PF00926.14 gi|330507269|ref|YP_004383697.1| - 1.8e-83 278.5 0.4 2.3e-83 278.2 0.3 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.15 gi|330507269|ref|YP_004383697.1| - 1.3e-73 245.7 0.0 4.3e-73 244.1 0.0 1.9 2 0 0 2 2 2 1 GTP cyclohydrolase II HSP20 PF00011.16 gi|330507270|ref|YP_004383698.1| - 2.3e-22 78.7 0.9 3.1e-22 78.3 0.7 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|330507270|ref|YP_004383698.1| - 2.5e-05 24.7 0.0 5.3e-05 23.6 0.0 1.5 1 1 0 1 1 1 1 CS domain DUF367 PF04034.8 gi|330507271|ref|YP_004383699.1| - 3e-46 156.1 0.0 3.8e-46 155.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|330507271|ref|YP_004383699.1| - 2.4e-12 46.2 0.0 3.6e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Glyco_trans_1_4 PF13692.1 gi|330507271|ref|YP_004383699.1| - 0.031 14.4 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 tRNA-synt_1 PF00133.17 gi|330507272|ref|YP_004383700.1| - 5.9e-129 430.7 0.1 3.6e-128 428.1 0.1 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|330507272|ref|YP_004383700.1| - 4.7e-36 123.8 0.0 1.2e-35 122.5 0.0 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|330507272|ref|YP_004383700.1| - 3.9e-24 85.0 0.3 2.5e-14 52.7 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|330507272|ref|YP_004383700.1| - 4e-05 22.8 0.0 0.12 11.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|330507272|ref|YP_004383700.1| - 0.00099 18.4 0.0 0.0059 15.9 0.0 2.1 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 CYTH PF01928.16 gi|330507273|ref|YP_004383701.1| - 1.5e-35 122.5 4.5 1.7e-35 122.3 3.1 1.0 1 0 0 1 1 1 1 CYTH domain DUF1119 PF06550.6 gi|330507274|ref|YP_004383702.1| - 8.4e-78 261.3 17.0 1.1e-77 261.0 11.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) Cytochrom_B_C PF00032.12 gi|330507274|ref|YP_004383702.1| - 0.0069 16.5 2.5 0.0069 16.5 1.7 2.6 1 1 2 3 3 3 1 Cytochrome b(C-terminal)/b6/petD Presenilin PF01080.12 gi|330507274|ref|YP_004383702.1| - 0.98 8.1 14.0 1.8 7.3 2.6 3.1 2 1 0 3 3 3 0 Presenilin DUF1212 PF06738.7 gi|330507274|ref|YP_004383702.1| - 2.6 7.4 13.2 0.034 13.6 1.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1212) Zn_Tnp_IS1595 PF12760.2 gi|330507275|ref|YP_004383703.1| - 0.00018 21.2 1.0 0.00028 20.6 0.7 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain RecR PF02132.10 gi|330507275|ref|YP_004383703.1| - 0.0045 16.3 1.2 2.2 7.7 0.2 2.2 2 0 0 2 2 2 2 RecR protein zf-Dof PF02701.10 gi|330507275|ref|YP_004383703.1| - 0.013 15.4 1.2 0.015 15.1 0.0 1.6 2 0 0 2 2 2 0 Dof domain, zinc finger Lar_restr_allev PF14354.1 gi|330507275|ref|YP_004383703.1| - 0.033 14.5 0.8 0.039 14.2 0.5 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Cys_rich_KTR PF14205.1 gi|330507275|ref|YP_004383703.1| - 0.033 13.6 1.8 0.073 12.5 0.2 2.0 2 0 0 2 2 2 0 Cysteine-rich KTR NinF PF05810.7 gi|330507275|ref|YP_004383703.1| - 0.057 13.2 1.0 0.11 12.3 0.5 1.6 1 1 1 2 2 2 0 NinF protein RNA_POL_M_15KD PF02150.11 gi|330507275|ref|YP_004383703.1| - 0.071 12.8 5.0 0.25 11.0 1.2 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF3797 PF12677.2 gi|330507275|ref|YP_004383703.1| - 0.08 12.5 3.6 1.4 8.6 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) A2L_zn_ribbon PF08792.5 gi|330507275|ref|YP_004383703.1| - 0.11 11.9 4.8 0.81 9.2 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF164 PF02591.10 gi|330507275|ref|YP_004383703.1| - 0.12 12.1 0.4 10 6.0 0.0 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain DUF3268 PF11672.3 gi|330507275|ref|YP_004383703.1| - 0.18 11.8 1.3 0.24 11.4 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) Terminase_GpA PF05876.7 gi|330507275|ref|YP_004383703.1| - 0.23 9.7 1.4 0.25 9.6 1.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Nudix_N_2 PF14803.1 gi|330507275|ref|YP_004383703.1| - 0.28 10.8 0.6 0.28 10.8 0.4 2.2 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|330507275|ref|YP_004383703.1| - 0.37 10.1 3.0 11 5.4 0.4 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|330507275|ref|YP_004383703.1| - 0.42 10.4 5.2 1.3 8.8 3.6 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|330507275|ref|YP_004383703.1| - 0.47 9.6 4.6 2 7.6 3.2 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-NADH-PPase PF09297.6 gi|330507275|ref|YP_004383703.1| - 0.55 9.8 4.5 0.37 10.3 0.4 2.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|330507275|ref|YP_004383703.1| - 0.59 10.2 5.9 0.43 10.6 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.13 gi|330507275|ref|YP_004383703.1| - 0.95 9.1 9.7 0.76 9.4 0.4 2.5 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) NOB1_Zn_bind PF08772.6 gi|330507275|ref|YP_004383703.1| - 1.2 8.9 6.3 7.1 6.5 4.4 2.0 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|330507275|ref|YP_004383703.1| - 1.5 8.3 11.6 0.26 10.8 2.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-B_box PF00643.19 gi|330507275|ref|YP_004383703.1| - 1.8 8.5 6.6 2.9 7.8 0.3 2.2 2 0 0 2 2 2 0 B-box zinc finger zf-ribbon_3 PF13248.1 gi|330507275|ref|YP_004383703.1| - 2 7.7 10.0 0.5 9.6 1.9 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|330507275|ref|YP_004383703.1| - 3.5 8.1 6.1 5.6 7.4 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Hist_deacetyl PF00850.14 gi|330507276|ref|YP_004383704.1| - 3.7e-79 266.2 0.0 4.4e-79 265.9 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain DUF108 PF01958.13 gi|330507277|ref|YP_004383705.1| - 6.7e-33 112.7 0.2 1.4e-32 111.7 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|330507277|ref|YP_004383705.1| - 2.9e-22 79.2 1.4 4.4e-22 78.6 1.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|330507277|ref|YP_004383705.1| - 1.1e-08 34.9 0.4 2e-08 34.1 0.1 1.5 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.12 gi|330507277|ref|YP_004383705.1| - 3.9e-07 30.4 2.7 9.5e-07 29.1 1.9 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|330507277|ref|YP_004383705.1| - 5.3e-06 26.9 0.5 1e-05 26.0 0.4 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|330507277|ref|YP_004383705.1| - 0.00012 21.2 0.1 0.00019 20.6 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|330507277|ref|YP_004383705.1| - 0.0018 17.3 1.1 0.0022 17.0 0.7 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|330507277|ref|YP_004383705.1| - 0.0022 18.3 0.5 0.0035 17.6 0.3 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|330507277|ref|YP_004383705.1| - 0.092 12.3 1.0 0.2 11.2 0.7 1.7 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|330507277|ref|YP_004383705.1| - 0.1 12.4 0.6 0.19 11.5 0.4 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Ead_Ea22 PF13935.1 gi|330507277|ref|YP_004383705.1| - 0.12 12.7 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Ead/Ea22-like protein ThiF PF00899.16 gi|330507277|ref|YP_004383705.1| - 0.17 11.7 4.5 6.4 6.6 1.1 2.3 1 1 1 2 2 2 0 ThiF family QRPTase_C PF01729.14 gi|330507278|ref|YP_004383706.1| - 4.9e-57 192.1 0.0 1.6e-56 190.4 0.0 1.7 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|330507278|ref|YP_004383706.1| - 3.2e-20 71.7 0.0 7.1e-20 70.6 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain DUF1341 PF07071.6 gi|330507278|ref|YP_004383706.1| - 0.0045 16.5 0.3 0.011 15.3 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1341) Ribul_P_3_epim PF00834.14 gi|330507278|ref|YP_004383706.1| - 0.074 12.1 0.5 0.97 8.5 0.1 2.6 2 1 1 3 3 3 0 Ribulose-phosphate 3 epimerase family TRAP_beta PF05753.9 gi|330507279|ref|YP_004383707.1| - 2.3e-15 56.2 0.2 4.3e-12 45.5 0.0 2.6 2 1 0 2 2 2 2 Translocon-associated protein beta (TRAPB) DUF11 PF01345.13 gi|330507279|ref|YP_004383707.1| - 2.7e-09 36.9 0.1 1.9e-08 34.2 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function DUF11 CARDB PF07705.6 gi|330507279|ref|YP_004383707.1| - 7.7e-07 29.0 0.0 2.3e-05 24.3 0.0 2.5 2 1 0 2 2 2 1 CARDB BatD PF13584.1 gi|330507279|ref|YP_004383707.1| - 0.001 17.7 3.6 0.0011 17.6 0.2 2.4 3 0 0 3 3 3 1 Oxygen tolerance Transglut_C PF00927.17 gi|330507279|ref|YP_004383707.1| - 0.0017 18.3 0.0 0.96 9.5 0.0 2.8 2 1 0 2 2 2 2 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.4 gi|330507279|ref|YP_004383707.1| - 0.058 13.4 0.0 1.2 9.2 0.0 2.6 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase BatA PF07584.6 gi|330507279|ref|YP_004383707.1| - 3.1 8.0 6.6 2.6 8.3 0.5 2.2 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal Tubulin PF00091.20 gi|330507280|ref|YP_004383708.1| - 1.3e-29 103.6 0.0 2.6e-29 102.6 0.0 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|330507280|ref|YP_004383708.1| - 0.002 17.1 0.1 0.0083 15.0 0.0 2.0 1 1 0 1 1 1 1 Tubulin like DUF3764 PF12594.3 gi|330507280|ref|YP_004383708.1| - 0.046 13.4 0.0 0.094 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3764) GXGXG PF01493.14 gi|330507281|ref|YP_004383709.1| - 3.1e-28 98.1 12.2 1.2e-19 70.0 3.6 3.2 1 1 1 2 2 2 2 GXGXG motif DUF374 PF04028.8 gi|330507281|ref|YP_004383709.1| - 0.18 11.0 2.2 2.7 7.3 0.0 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF374) DUF373 PF04123.8 gi|330507282|ref|YP_004383710.1| - 7.5e-111 370.4 4.1 9e-111 370.2 2.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF948 PF06103.6 gi|330507283|ref|YP_004383711.1| - 0.025 14.4 0.1 0.048 13.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) ThiC PF01964.13 gi|330507284|ref|YP_004383712.1| - 2.8e-177 589.4 0.0 3.2e-177 589.2 0.0 1.0 1 0 0 1 1 1 1 ThiC family NIR_SIR PF01077.17 gi|330507285|ref|YP_004383713.1| - 7.2e-37 126.1 0.0 1.2e-36 125.4 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|330507285|ref|YP_004383713.1| - 1.1e-13 50.5 0.1 2.2e-13 49.5 0.0 1.6 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain 3HCDH PF00725.17 gi|330507285|ref|YP_004383713.1| - 0.094 13.1 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ChaB PF06150.7 gi|330507286|ref|YP_004383714.1| - 1.7e-18 66.1 0.5 2.4e-18 65.6 0.3 1.2 1 0 0 1 1 1 1 ChaB LTD PF00932.14 gi|330507288|ref|YP_004383716.1| - 4.7e-09 36.3 0.6 4.4e-08 33.2 0.4 2.2 1 1 0 1 1 1 1 Lamin Tail Domain LTD PF00932.14 gi|330507289|ref|YP_004383717.1| - 1.6e-10 41.0 1.2 9.2e-09 35.3 0.8 2.1 1 1 0 1 1 1 1 Lamin Tail Domain PQQ_3 PF13570.1 gi|330507289|ref|YP_004383717.1| - 0.27 11.5 1.5 0.35 11.1 0.4 1.7 2 0 0 2 2 2 0 PQQ-like domain CARDB PF07705.6 gi|330507290|ref|YP_004383718.1| - 4.5e-53 177.5 0.0 3e-11 43.2 0.0 4.1 4 0 0 4 4 4 4 CARDB TRAP_beta PF05753.9 gi|330507290|ref|YP_004383718.1| - 5.7e-06 25.6 0.0 6.6 5.8 0.0 4.1 4 0 0 4 4 4 4 Translocon-associated protein beta (TRAPB) YkyB PF14177.1 gi|330507290|ref|YP_004383718.1| - 0.0064 16.6 0.0 91 3.1 0.0 4.0 4 0 0 4 4 4 0 YkyB-like protein Imm39 PF15600.1 gi|330507290|ref|YP_004383718.1| - 0.0099 15.7 0.0 1.1e+02 2.5 0.0 4.0 4 0 0 4 4 4 0 Immunity protein 39 DUF402 PF04167.8 gi|330507290|ref|YP_004383718.1| - 0.059 13.2 5.4 84 3.0 0.0 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF402) DUF11 PF01345.13 gi|330507290|ref|YP_004383718.1| - 0.37 10.8 11.4 51 4.0 0.1 4.3 4 0 0 4 4 4 0 Domain of unknown function DUF11 Serglycin PF04360.7 gi|330507290|ref|YP_004383718.1| - 1.6 8.4 12.0 20 4.9 0.3 3.5 3 0 0 3 3 3 0 Serglycin Big_3_4 PF13754.1 gi|330507291|ref|YP_004383719.1| - 0.05 13.9 0.0 0.15 12.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) tRNA-synt_1d PF00750.14 gi|330507292|ref|YP_004383720.1| - 1.2e-54 185.4 0.1 1.6e-54 185.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|330507292|ref|YP_004383720.1| - 3.3e-29 101.2 1.3 3.3e-29 101.2 0.9 2.3 3 0 0 3 3 3 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|330507292|ref|YP_004383720.1| - 4.1e-12 46.4 0.0 1.6e-11 44.6 0.0 2.1 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|330507292|ref|YP_004383720.1| - 1.6e-08 33.6 0.0 0.00012 20.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|330507292|ref|YP_004383720.1| - 0.0061 15.2 0.1 0.6 8.6 0.0 2.9 3 0 0 3 3 3 1 tRNA synthetases class I (M) SHMT PF00464.14 gi|330507292|ref|YP_004383720.1| - 0.069 11.5 0.0 0.11 10.8 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase tRNA-synt_1 PF00133.17 gi|330507292|ref|YP_004383720.1| - 0.094 10.7 0.0 0.16 9.9 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) MULE PF10551.4 gi|330507293|ref|YP_004383721.1| - 6.9e-08 32.5 0.0 2.9e-07 30.5 0.0 2.1 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|330507293|ref|YP_004383721.1| - 9.2e-07 28.3 2.0 2.4e-05 23.7 1.4 2.1 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|330507293|ref|YP_004383721.1| - 0.0086 16.1 0.1 0.023 14.7 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain DZR PF12773.2 gi|330507293|ref|YP_004383721.1| - 0.016 14.9 1.8 0.036 13.8 1.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon BTB PF00651.26 gi|330507293|ref|YP_004383721.1| - 0.081 12.9 0.2 0.22 11.5 0.0 1.7 2 0 0 2 2 2 0 BTB/POZ domain Zn_ribbon_recom PF13408.1 gi|330507293|ref|YP_004383721.1| - 0.48 10.7 4.8 0.11 12.7 0.8 1.9 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.1 gi|330507293|ref|YP_004383721.1| - 4.7 6.5 6.2 12 5.2 1.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF4139 PF13598.1 gi|330507294|ref|YP_004383722.1| - 8.9e-25 87.6 0.3 6.6e-15 55.2 0.2 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4139) DUF4140 PF13600.1 gi|330507294|ref|YP_004383722.1| - 2.3e-06 27.9 0.5 1.6e-05 25.3 0.0 2.3 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) DUF92 PF01940.11 gi|330507295|ref|YP_004383723.1| - 0.0081 15.3 2.1 0.0092 15.1 1.4 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF92 APP_E2 PF12925.2 gi|330507298|ref|YP_004383726.1| - 0.054 13.0 0.1 0.055 13.0 0.0 1.1 1 0 0 1 1 1 0 E2 domain of amyloid precursor protein Pox_A_type_inc PF04508.7 gi|330507298|ref|YP_004383726.1| - 0.69 9.8 4.4 12 5.9 0.1 2.8 2 1 0 2 2 2 0 Viral A-type inclusion protein repeat Plasmid_stabil PF05016.9 gi|330507299|ref|YP_004383727.1| - 2.3e-05 24.7 0.0 2.4e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Plasmid_Txe PF06769.8 gi|330507299|ref|YP_004383727.1| - 0.01 15.6 0.0 0.013 15.2 0.0 1.4 1 1 0 1 1 1 0 Plasmid encoded toxin Txe Plasmid_killer PF05015.8 gi|330507299|ref|YP_004383727.1| - 0.012 15.7 0.1 0.015 15.4 0.0 1.4 1 1 0 1 1 1 0 Plasmid maintenance system killer protein DUF4139 PF13598.1 gi|330507300|ref|YP_004383728.1| - 5.4e-25 88.3 1.9 3.1e-22 79.2 1.3 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4139) GDE_N_bis PF14742.1 gi|330507300|ref|YP_004383728.1| - 0.083 12.2 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of (some) glycogen debranching enzymes DUF11 PF01345.13 gi|330507300|ref|YP_004383728.1| - 0.11 12.5 0.7 11 6.1 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function DUF11 HSP20 PF00011.16 gi|330507301|ref|YP_004383729.1| - 6.1e-13 48.5 0.1 8.1e-13 48.1 0.1 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|330507301|ref|YP_004383729.1| - 0.01 15.2 0.1 0.013 14.9 0.1 1.4 1 1 0 1 1 1 0 pre-RNA processing PIH1/Nop17 CS PF04969.11 gi|330507301|ref|YP_004383729.1| - 0.014 15.8 0.0 0.038 14.5 0.0 1.7 1 1 0 1 1 1 0 CS domain Amidohydro_4 PF13147.1 gi|330507302|ref|YP_004383730.1| - 1.3e-32 113.9 1.8 1.2e-31 110.7 1.3 2.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|330507302|ref|YP_004383730.1| - 1.2e-20 74.4 0.0 4.3e-20 72.6 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|330507302|ref|YP_004383730.1| - 5.2e-13 48.6 0.0 1.2e-12 47.4 0.0 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|330507302|ref|YP_004383730.1| - 1.6e-07 30.9 0.0 3e-05 23.4 0.0 2.5 3 0 0 3 3 3 2 Amidohydrolase family Adenosine_kin PF04008.9 gi|330507303|ref|YP_004383731.1| - 7.5e-70 233.3 0.0 8.5e-70 233.2 0.0 1.0 1 0 0 1 1 1 1 Adenosine specific kinase NfeD PF01957.13 gi|330507304|ref|YP_004383732.1| - 0.1 12.7 1.4 0.12 12.5 0.9 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF3092 PF11289.3 gi|330507304|ref|YP_004383732.1| - 0.22 10.6 2.4 0.25 10.5 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3092) DUF4013 PF13197.1 gi|330507305|ref|YP_004383733.1| - 0.003 16.8 18.1 0.003 16.8 12.5 2.4 2 1 1 3 3 3 2 Protein of unknown function (DUF4013) UPF0259 PF06790.6 gi|330507305|ref|YP_004383733.1| - 0.0059 16.0 9.3 0.0059 16.0 6.5 2.5 3 0 0 3 3 3 2 Uncharacterised protein family (UPF0259) DUF2663 PF10864.3 gi|330507305|ref|YP_004383733.1| - 0.27 11.4 1.1 0.68 10.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2663) Saccharop_dh_N PF04455.7 gi|330507306|ref|YP_004383734.1| - 2.4e-35 120.7 0.1 4.3e-35 119.9 0.0 1.4 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region Ectoine_synth PF06339.7 gi|330507307|ref|YP_004383735.1| - 6.2e-56 187.7 0.0 7.2e-32 109.9 0.0 2.0 1 1 1 2 2 2 2 Ectoine synthase Cupin_1 PF00190.17 gi|330507307|ref|YP_004383735.1| - 0.0018 17.7 0.0 0.0025 17.2 0.0 1.3 1 1 0 1 1 1 1 Cupin Cupin_2 PF07883.6 gi|330507307|ref|YP_004383735.1| - 0.0028 17.1 0.3 0.16 11.4 0.2 2.3 1 1 0 1 1 1 1 Cupin domain Aminotran_3 PF00202.16 gi|330507308|ref|YP_004383736.1| - 3.4e-74 249.7 0.0 4.1e-74 249.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|330507308|ref|YP_004383736.1| - 0.0094 15.1 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Acetyltransf_1 PF00583.19 gi|330507309|ref|YP_004383737.1| - 2.6e-11 43.3 0.0 3.7e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|330507309|ref|YP_004383737.1| - 7e-07 29.3 0.0 1.2e-06 28.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|330507309|ref|YP_004383737.1| - 3.3e-06 27.2 0.0 4.8e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|330507309|ref|YP_004383737.1| - 0.0022 18.1 0.0 0.0041 17.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|330507309|ref|YP_004383737.1| - 0.0056 16.5 0.0 0.021 14.6 0.0 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Tautomerase_2 PF14552.1 gi|330507309|ref|YP_004383737.1| - 0.072 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Tautomerase enzyme Acetyltransf_6 PF13480.1 gi|330507309|ref|YP_004383737.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Asp_Glu_race PF01177.17 gi|330507310|ref|YP_004383738.1| - 0.0024 17.8 0.2 0.0045 16.9 0.1 1.4 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase PUA PF01472.15 gi|330507311|ref|YP_004383739.1| - 2e-17 62.6 1.4 3e-17 62.1 1.0 1.3 1 0 0 1 1 1 1 PUA domain LSM PF01423.17 gi|330507312|ref|YP_004383740.1| - 1.6e-20 72.4 0.3 1.7e-20 72.2 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|330507312|ref|YP_004383740.1| - 0.058 13.3 0.1 0.082 12.8 0.0 1.3 1 0 0 1 1 1 0 Ataxin 2 SM domain Ribosomal_L37e PF01907.14 gi|330507313|ref|YP_004383741.1| - 1.3e-23 82.5 8.8 1.3e-23 82.4 6.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|330507313|ref|YP_004383741.1| - 0.0037 17.0 0.7 0.0044 16.7 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-HIT PF04438.11 gi|330507313|ref|YP_004383741.1| - 0.07 12.7 2.0 3.9 7.2 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-piccolo PF05715.8 gi|330507313|ref|YP_004383741.1| - 0.11 12.5 1.1 0.18 11.8 0.8 1.5 1 1 0 1 1 1 0 Piccolo Zn-finger NOB1_Zn_bind PF08772.6 gi|330507313|ref|YP_004383741.1| - 0.16 11.8 2.9 0.18 11.6 2.0 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.1 gi|330507313|ref|YP_004383741.1| - 0.21 11.3 4.1 1.8 8.3 0.3 2.2 1 1 1 2 2 2 0 Nudix N-terminal zf-RanBP PF00641.13 gi|330507313|ref|YP_004383741.1| - 0.42 9.7 2.0 3.1 6.9 0.1 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-C2H2_3 PF13878.1 gi|330507313|ref|YP_004383741.1| - 0.49 10.0 3.0 10 5.7 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-ribbon_3 PF13248.1 gi|330507313|ref|YP_004383741.1| - 0.57 9.4 3.0 1.7 7.9 2.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|330507313|ref|YP_004383741.1| - 1.5 8.3 7.4 0.68 9.4 1.4 2.1 1 1 2 3 3 2 0 DNA directed RNA polymerase, 7 kDa subunit RRN7 PF11781.3 gi|330507313|ref|YP_004383741.1| - 1.6 8.3 6.6 4.5 6.8 0.4 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 GATase_6 PF13522.1 gi|330507314|ref|YP_004383742.1| - 5.9e-24 84.5 0.0 4.3e-23 81.7 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|330507314|ref|YP_004383742.1| - 1.4e-22 79.8 0.0 1.2e-16 60.4 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|330507314|ref|YP_004383742.1| - 3e-22 78.6 0.0 7.4e-22 77.4 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|330507314|ref|YP_004383742.1| - 8.6e-11 41.6 0.0 1.9e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|330507314|ref|YP_004383742.1| - 2.5e-07 29.6 0.0 1.5e-06 27.0 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferases class-II MFS_1 PF07690.11 gi|330507315|ref|YP_004383743.1| - 8.9e-29 100.2 92.1 8.4e-23 80.6 38.1 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330507315|ref|YP_004383743.1| - 0.00021 20.0 19.3 0.00021 20.0 13.4 2.4 2 0 0 2 2 2 1 Sugar (and other) transporter Hexapep PF00132.19 gi|330507316|ref|YP_004383744.1| - 8.4e-15 53.5 10.2 3.4e-06 26.2 0.8 4.4 2 2 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|330507316|ref|YP_004383744.1| - 3.2e-12 45.7 10.3 0.0033 16.9 0.6 4.4 3 1 1 4 4 4 4 Hexapeptide repeat of succinyl-transferase Semialdhyde_dhC PF02774.13 gi|330507317|ref|YP_004383745.1| - 1.5e-38 132.4 0.0 2.5e-38 131.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|330507317|ref|YP_004383745.1| - 1.2e-32 112.7 0.0 1.8e-32 112.1 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|330507317|ref|YP_004383745.1| - 0.0079 16.7 0.0 0.013 16.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.15 gi|330507317|ref|YP_004383745.1| - 0.014 14.8 0.0 0.031 13.7 0.0 1.5 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|330507317|ref|YP_004383745.1| - 0.023 14.5 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|330507317|ref|YP_004383745.1| - 0.062 13.8 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Radical_SAM PF04055.16 gi|330507318|ref|YP_004383746.1| - 2.4e-21 76.6 0.0 3.4e-21 76.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|330507318|ref|YP_004383746.1| - 5.3e-10 39.4 0.8 1.1e-09 38.5 0.6 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|330507318|ref|YP_004383746.1| - 1.2e-08 35.2 0.0 2.8e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330507318|ref|YP_004383746.1| - 5.6e-08 32.8 0.5 1.1e-07 31.9 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain HTH_AsnC-type PF13404.1 gi|330507319|ref|YP_004383747.1| - 9.6e-06 25.0 0.0 6.7e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain DDRGK PF09756.4 gi|330507319|ref|YP_004383747.1| - 0.022 14.1 0.1 0.096 12.0 0.1 1.9 1 1 0 1 1 1 0 DDRGK domain Thioredoxin PF00085.15 gi|330507320|ref|YP_004383748.1| - 1e-20 73.3 0.0 1.1e-20 73.2 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|330507320|ref|YP_004383748.1| - 1.6e-07 31.5 0.1 1.8e-06 28.1 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|330507320|ref|YP_004383748.1| - 5.5e-06 26.4 0.0 1.2e-05 25.3 0.0 1.6 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|330507320|ref|YP_004383748.1| - 0.00023 21.1 0.1 0.00039 20.3 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|330507320|ref|YP_004383748.1| - 0.0009 18.9 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|330507320|ref|YP_004383748.1| - 0.0014 18.2 0.0 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_3 PF13192.1 gi|330507320|ref|YP_004383748.1| - 0.0055 16.4 0.0 0.0066 16.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|330507320|ref|YP_004383748.1| - 0.007 15.9 0.1 0.0094 15.5 0.0 1.2 1 1 0 1 1 1 1 Thioredoxin Lactamase_B_2 PF12706.2 gi|330507321|ref|YP_004383749.1| - 1.5e-07 31.1 0.3 1.9e-06 27.5 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|330507321|ref|YP_004383749.1| - 0.00026 20.7 0.0 0.00044 19.9 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|330507321|ref|YP_004383749.1| - 0.0018 17.9 6.3 0.013 15.2 4.3 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|330507321|ref|YP_004383749.1| - 0.0028 17.4 0.1 0.0063 16.3 0.1 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Vasculin PF15337.1 gi|330507321|ref|YP_004383749.1| - 0.0044 17.4 0.0 0.0082 16.5 0.0 1.4 1 0 0 1 1 1 1 Vascular protein family Vasculin-like 1 PDEase_II PF02112.10 gi|330507321|ref|YP_004383749.1| - 0.094 11.6 0.2 0.23 10.3 0.1 1.5 1 1 1 2 2 2 0 cAMP phosphodiesterases class-II Glycos_transf_2 PF00535.21 gi|330507322|ref|YP_004383750.1| - 2.3e-23 82.6 0.0 3.1e-23 82.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330507322|ref|YP_004383750.1| - 2e-05 24.4 0.0 2.7e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 RseC_MucC PF04246.7 gi|330507322|ref|YP_004383750.1| - 0.065 12.8 1.6 0.11 12.0 0.7 1.6 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Glyco_tranf_2_4 PF13704.1 gi|330507322|ref|YP_004383750.1| - 0.11 12.8 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF373 PF04123.8 gi|330507322|ref|YP_004383750.1| - 0.32 9.9 3.8 0.19 10.6 1.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Transp_cyt_pur PF02133.10 gi|330507322|ref|YP_004383750.1| - 1.8 7.0 5.3 2.4 6.6 3.7 1.1 1 0 0 1 1 1 0 Permease for cytosine/purines, uracil, thiamine, allantoin Glycos_transf_2 PF00535.21 gi|330507323|ref|YP_004383751.1| - 3.7e-31 108.0 0.0 5.6e-31 107.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330507323|ref|YP_004383751.1| - 6.8e-22 78.3 0.0 1.1e-21 77.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|330507323|ref|YP_004383751.1| - 1.2e-14 54.0 0.0 2.1e-14 53.2 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|330507323|ref|YP_004383751.1| - 1.5e-10 40.6 0.1 0.0026 17.0 0.0 3.2 2 1 1 3 3 3 3 Glycosyltransferase like family Glyco_trans_2_3 PF13632.1 gi|330507323|ref|YP_004383751.1| - 2.6e-07 30.5 0.0 4.1e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.9 gi|330507323|ref|YP_004383751.1| - 4.1e-05 22.9 0.0 7.5e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_transf_21 PF13506.1 gi|330507323|ref|YP_004383751.1| - 0.0049 16.1 0.0 0.0076 15.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|330507323|ref|YP_004383751.1| - 0.006 16.8 0.0 0.047 14.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 2 Epimerase PF01370.16 gi|330507325|ref|YP_004383753.1| - 3.6e-52 177.1 0.0 4.2e-52 176.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|330507325|ref|YP_004383753.1| - 1.1e-21 76.8 0.0 1.4e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|330507325|ref|YP_004383753.1| - 6.3e-15 54.8 0.0 2.2e-14 53.0 0.0 1.7 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|330507325|ref|YP_004383753.1| - 1.3e-13 50.5 0.0 5.8e-13 48.3 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|330507325|ref|YP_004383753.1| - 2.1e-10 40.9 0.0 3.5e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|330507325|ref|YP_004383753.1| - 1.3e-08 34.0 0.0 2e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|330507325|ref|YP_004383753.1| - 1.7e-07 30.7 0.0 2.6e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|330507325|ref|YP_004383753.1| - 1.1e-06 28.6 0.0 1.9e-05 24.6 0.0 2.4 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|330507325|ref|YP_004383753.1| - 5.8e-05 22.9 0.1 0.00012 21.9 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit NTP_transferase PF00483.18 gi|330507326|ref|YP_004383754.1| - 4.4e-43 147.3 0.0 4.9e-43 147.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|330507326|ref|YP_004383754.1| - 7.5e-11 42.3 0.0 8.1e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain MSP1_C PF07462.6 gi|330507326|ref|YP_004383754.1| - 0.022 13.1 0.0 0.032 12.6 0.0 1.2 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus Epimerase PF01370.16 gi|330507327|ref|YP_004383755.1| - 1.2e-52 178.7 0.0 1.4e-52 178.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|330507327|ref|YP_004383755.1| - 7.3e-23 80.6 0.0 4e-21 74.9 0.0 2.2 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|330507327|ref|YP_004383755.1| - 5.1e-22 78.0 0.0 2.7e-18 65.8 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.12 gi|330507327|ref|YP_004383755.1| - 7.7e-22 77.5 0.0 8.7e-22 77.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|330507327|ref|YP_004383755.1| - 1.9e-18 66.4 0.0 1e-16 60.7 0.0 2.6 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|330507327|ref|YP_004383755.1| - 5.7e-08 32.9 0.0 7e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding Epimerase_Csub PF13950.1 gi|330507327|ref|YP_004383755.1| - 0.00025 20.9 0.0 0.00047 20.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit DUF2362 PF10154.4 gi|330507327|ref|YP_004383755.1| - 0.031 12.9 0.2 0.046 12.3 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2362) adh_short PF00106.20 gi|330507327|ref|YP_004383755.1| - 0.041 13.8 0.1 1.8 8.4 0.1 2.2 1 1 0 1 1 1 0 short chain dehydrogenase DapB_N PF01113.15 gi|330507327|ref|YP_004383755.1| - 0.13 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ELFV_dehydrog PF00208.16 gi|330507327|ref|YP_004383755.1| - 0.15 11.5 0.2 0.3 10.6 0.0 1.6 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Alg14 PF08660.6 gi|330507328|ref|YP_004383756.1| - 9.7e-33 113.5 0.2 6.3e-31 107.6 0.1 2.0 1 1 0 1 1 1 1 Oligosaccharide biosynthesis protein Alg14 like Glyco_trans_1_3 PF13528.1 gi|330507328|ref|YP_004383756.1| - 0.00018 20.8 0.0 0.06 12.5 0.0 2.0 1 1 1 2 2 2 2 Glycosyl transferase family 1 Glyco_trans_4_4 PF13579.1 gi|330507328|ref|YP_004383756.1| - 0.045 13.8 0.0 0.051 13.7 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_tran_28_C PF04101.11 gi|330507329|ref|YP_004383757.1| - 3.5e-16 59.3 0.0 4e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glycos_transf_1 PF00534.15 gi|330507330|ref|YP_004383758.1| - 6.6e-39 133.0 0.0 1.1e-38 132.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330507330|ref|YP_004383758.1| - 2.5e-15 56.8 0.0 6.5e-15 55.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|330507330|ref|YP_004383758.1| - 2.8e-12 47.0 0.0 4.8e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|330507330|ref|YP_004383758.1| - 2.9e-09 36.8 0.7 2.5e-08 33.8 0.2 2.7 3 1 0 3 3 3 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|330507330|ref|YP_004383758.1| - 5.6e-07 29.7 0.0 1.8e-06 28.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|330507330|ref|YP_004383758.1| - 0.00098 18.8 0.0 0.0038 16.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Auxin_BP PF02041.11 gi|330507330|ref|YP_004383758.1| - 0.11 11.9 0.1 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 Auxin binding protein Transthyretin PF00576.16 gi|330507330|ref|YP_004383758.1| - 0.13 12.1 0.1 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 HIUase/Transthyretin family Asn_synthase PF00733.16 gi|330507331|ref|YP_004383759.1| - 3.1e-55 187.4 0.0 4.4e-55 186.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|330507331|ref|YP_004383759.1| - 3.4e-46 156.0 0.0 6.5e-46 155.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|330507331|ref|YP_004383759.1| - 2.3e-44 150.5 0.0 4.5e-44 149.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|330507331|ref|YP_004383759.1| - 1.3e-06 27.4 0.0 0.01 14.5 0.0 2.9 1 1 2 3 3 3 2 Glutamine amidotransferases class-II DUF3700 PF12481.3 gi|330507331|ref|YP_004383759.1| - 1.4e-06 27.6 0.0 2.8e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Aluminium induced protein UB2H PF14814.1 gi|330507331|ref|YP_004383759.1| - 0.04 13.6 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain QueC PF06508.8 gi|330507331|ref|YP_004383759.1| - 0.042 13.1 0.0 0.1 11.8 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|330507331|ref|YP_004383759.1| - 0.069 12.0 0.0 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 NAD synthase Pectate_lyase_3 PF12708.2 gi|330507332|ref|YP_004383760.1| - 4.3e-11 43.3 0.2 9.7e-11 42.2 0.1 1.7 1 1 0 1 1 1 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|330507332|ref|YP_004383760.1| - 1.1e-05 25.2 6.0 1.1e-05 25.2 4.1 3.5 2 1 1 3 3 3 2 Right handed beta helix region NosD PF05048.8 gi|330507332|ref|YP_004383760.1| - 0.0055 15.8 7.1 0.016 14.3 0.3 3.0 1 1 1 3 3 3 1 Periplasmic copper-binding protein (NosD) Adeno_E1B_55K PF01696.12 gi|330507332|ref|YP_004383760.1| - 0.037 12.4 0.1 0.19 10.1 0.1 2.1 1 1 0 1 1 1 0 Adenovirus EB1 55K protein / large t-antigen Polysacc_synt_3 PF13440.1 gi|330507333|ref|YP_004383761.1| - 3.9e-10 39.6 38.6 2.1e-08 33.9 13.3 2.3 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt PF01943.12 gi|330507333|ref|YP_004383761.1| - 2.2e-08 33.7 22.6 2.2e-08 33.7 15.6 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|330507333|ref|YP_004383761.1| - 2.4e-05 24.1 5.9 2.4e-05 24.1 4.1 4.2 2 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain LVIVD PF08309.6 gi|330507333|ref|YP_004383761.1| - 0.018 14.0 0.1 0.041 12.8 0.0 1.6 1 0 0 1 1 1 0 LVIVD repeat DUF443 PF04276.7 gi|330507333|ref|YP_004383761.1| - 1.6 8.1 9.1 0.098 12.0 1.8 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF443) BDV_P24 PF06595.6 gi|330507334|ref|YP_004383762.1| - 0.12 12.1 0.6 0.17 11.6 0.4 1.4 1 1 0 1 1 1 0 Borna disease virus P24 protein Death PF00531.17 gi|330507334|ref|YP_004383762.1| - 0.14 11.9 0.2 7.3 6.4 0.0 2.2 2 0 0 2 2 2 0 Death domain GATase PF00117.23 gi|330507335|ref|YP_004383763.1| - 4e-18 65.5 0.0 5.2e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|330507335|ref|YP_004383763.1| - 5.2e-06 26.0 0.1 1.4e-05 24.6 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 DUF4066 PF13278.1 gi|330507335|ref|YP_004383763.1| - 0.024 13.8 0.0 0.035 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase GATase_3 PF07685.9 gi|330507335|ref|YP_004383763.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain UPF0146 PF03686.8 gi|330507336|ref|YP_004383764.1| - 6e-34 116.6 0.0 7.1e-34 116.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Tubulin PF00091.20 gi|330507337|ref|YP_004383765.1| - 8.6e-32 110.7 1.2 5.7e-31 108.0 0.8 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|330507337|ref|YP_004383765.1| - 6.2e-28 96.7 0.0 1.8e-27 95.2 0.0 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain DUF218 PF02698.12 gi|330507337|ref|YP_004383765.1| - 0.0022 17.4 0.0 0.0058 16.1 0.0 1.7 1 0 0 1 1 1 1 DUF218 domain YjeF_N PF03853.10 gi|330507337|ref|YP_004383765.1| - 0.006 16.2 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus CPSase_L_chain PF00289.17 gi|330507337|ref|YP_004383765.1| - 0.0082 16.2 0.1 0.057 13.5 0.0 2.4 2 1 1 3 3 3 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Methyltransf_15 PF09445.5 gi|330507337|ref|YP_004383765.1| - 0.038 13.5 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase ThiF PF00899.16 gi|330507337|ref|YP_004383765.1| - 0.048 13.4 2.4 0.087 12.6 1.3 1.8 1 1 0 1 1 1 0 ThiF family TrkA_N PF02254.13 gi|330507337|ref|YP_004383765.1| - 0.073 13.0 0.1 0.24 11.4 0.1 1.9 1 0 0 1 1 1 0 TrkA-N domain Tubulin_2 PF13809.1 gi|330507337|ref|YP_004383765.1| - 0.77 8.6 4.8 2.8 6.8 0.1 2.3 2 0 0 2 2 2 0 Tubulin like UbiD PF01977.11 gi|330507338|ref|YP_004383766.1| - 3.2e-106 355.1 0.1 3.7e-106 355.0 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF1614 PF07758.6 gi|330507339|ref|YP_004383767.1| - 4e-53 179.7 11.7 4e-53 179.7 8.1 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DHQS PF01959.11 gi|330507340|ref|YP_004383768.1| - 6.4e-149 495.4 1.6 7.2e-149 495.2 1.1 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) OapA PF04225.7 gi|330507340|ref|YP_004383768.1| - 0.00015 21.5 0.0 0.33 10.8 0.0 2.7 1 1 1 2 2 2 2 Opacity-associated protein A LysM-like domain DHquinase_I PF01487.10 gi|330507341|ref|YP_004383769.1| - 9.3e-52 175.8 0.1 1.1e-51 175.6 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DUF512 PF04459.7 gi|330507342|ref|YP_004383770.1| - 2e-21 75.9 0.0 2.8e-21 75.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|330507342|ref|YP_004383770.1| - 4.9e-08 33.3 0.2 4.9e-08 33.3 0.1 4.0 3 1 1 4 4 4 2 Radical SAM superfamily Radical_SAM PF04055.16 gi|330507344|ref|YP_004383772.1| - 3.5e-19 69.5 0.1 4.9e-18 65.8 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|330507344|ref|YP_004383772.1| - 2.7e-13 49.8 0.1 5.8e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain DUF3786 PF12654.2 gi|330507346|ref|YP_004383774.1| - 0.017 14.3 0.0 0.019 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3786) DUF4263 PF14082.1 gi|330507347|ref|YP_004383775.1| - 2e-09 37.6 0.0 4.3e-09 36.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4263) Adenine_deam_C PF13382.1 gi|330507348|ref|YP_004383776.1| - 5.1e-68 227.5 0.1 9.1e-68 226.7 0.0 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|330507348|ref|YP_004383776.1| - 7.4e-31 108.0 0.1 8.5e-30 104.5 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|330507348|ref|YP_004383776.1| - 2.3e-12 47.5 4.9 9.9e-08 32.3 0.1 2.7 3 0 0 3 3 3 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|330507348|ref|YP_004383776.1| - 4.7e-10 39.1 0.2 1.3e-09 37.6 0.1 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|330507348|ref|YP_004383776.1| - 8.7e-06 25.1 0.3 0.015 14.5 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family AAA PF00004.24 gi|330507349|ref|YP_004383777.1| - 1.2e-98 326.4 0.0 6.1e-50 168.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|330507349|ref|YP_004383777.1| - 2.4e-30 104.3 0.0 1.7e-29 101.5 0.0 2.5 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|330507349|ref|YP_004383777.1| - 7.9e-16 57.8 0.0 1.5e-07 30.7 0.0 3.3 3 1 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|330507349|ref|YP_004383777.1| - 2.6e-14 53.6 0.0 5.9e-06 26.3 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.9 gi|330507349|ref|YP_004383777.1| - 7.4e-14 52.0 0.0 1.3e-06 28.4 0.0 3.0 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|330507349|ref|YP_004383777.1| - 1.7e-13 50.8 0.2 0.00028 21.0 0.0 4.1 3 2 0 3 3 2 2 AAA domain AAA_17 PF13207.1 gi|330507349|ref|YP_004383777.1| - 3.7e-13 50.3 0.5 4.9e-05 24.1 0.0 3.4 4 1 0 4 4 2 2 AAA domain AAA_5 PF07728.9 gi|330507349|ref|YP_004383777.1| - 7.2e-13 48.4 0.4 2.5e-05 24.0 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) CDC48_2 PF02933.12 gi|330507349|ref|YP_004383777.1| - 1.6e-12 46.8 0.0 6.8e-12 44.8 0.0 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 TIP49 PF06068.8 gi|330507349|ref|YP_004383777.1| - 6e-12 44.9 0.0 2.9e-05 22.9 0.0 2.7 3 0 0 3 3 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|330507349|ref|YP_004383777.1| - 3.1e-11 43.2 0.0 3.1e-05 23.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|330507349|ref|YP_004383777.1| - 2.6e-10 39.7 0.1 0.00034 19.7 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_33 PF13671.1 gi|330507349|ref|YP_004383777.1| - 6.9e-10 38.9 0.0 0.00013 21.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|330507349|ref|YP_004383777.1| - 9e-09 34.9 3.4 0.00053 19.4 0.1 3.9 2 2 1 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|330507349|ref|YP_004383777.1| - 1.6e-08 34.8 0.0 0.0047 17.2 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|330507349|ref|YP_004383777.1| - 1.9e-08 33.9 2.2 0.0055 16.4 0.1 3.7 4 0 0 4 4 3 2 Part of AAA domain IstB_IS21 PF01695.12 gi|330507349|ref|YP_004383777.1| - 4e-08 32.8 0.2 0.0074 15.7 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|330507349|ref|YP_004383777.1| - 1e-07 31.3 0.0 0.0075 15.4 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|330507349|ref|YP_004383777.1| - 2.6e-07 30.7 0.0 0.01 15.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|330507349|ref|YP_004383777.1| - 4.6e-07 29.7 0.0 0.095 12.3 0.0 4.0 2 2 2 4 4 4 1 Archaeal ATPase Sigma54_activat PF00158.21 gi|330507349|ref|YP_004383777.1| - 6.3e-07 29.0 0.0 0.11 11.9 0.0 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain KaiC PF06745.8 gi|330507349|ref|YP_004383777.1| - 1.2e-06 27.7 5.0 0.28 10.2 0.0 4.3 2 2 2 4 4 4 2 KaiC Sigma54_activ_2 PF14532.1 gi|330507349|ref|YP_004383777.1| - 1.9e-06 27.9 0.0 0.026 14.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|330507349|ref|YP_004383777.1| - 3e-06 27.3 0.0 0.1 12.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Parvo_NS1 PF01057.12 gi|330507349|ref|YP_004383777.1| - 5.4e-06 25.4 0.2 0.047 12.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ATP-synt_ab PF00006.20 gi|330507349|ref|YP_004383777.1| - 5.8e-06 25.9 0.1 0.011 15.2 0.0 2.6 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.1 gi|330507349|ref|YP_004383777.1| - 2.3e-05 24.0 1.2 0.16 11.5 0.2 2.6 2 1 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|330507349|ref|YP_004383777.1| - 3.3e-05 24.2 0.0 0.18 12.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter NB-ARC PF00931.17 gi|330507349|ref|YP_004383777.1| - 3.4e-05 22.8 0.0 0.19 10.5 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain DUF815 PF05673.8 gi|330507349|ref|YP_004383777.1| - 3.6e-05 22.8 0.0 0.23 10.3 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_3 PF07726.6 gi|330507349|ref|YP_004383777.1| - 3.7e-05 23.3 0.0 0.2 11.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) SKI PF01202.17 gi|330507349|ref|YP_004383777.1| - 9.8e-05 22.2 0.0 0.58 10.0 0.0 2.9 3 0 0 3 3 2 2 Shikimate kinase NACHT PF05729.7 gi|330507349|ref|YP_004383777.1| - 0.0001 21.9 0.2 0.44 10.1 0.0 3.7 4 0 0 4 4 4 1 NACHT domain Cytidylate_kin2 PF13189.1 gi|330507349|ref|YP_004383777.1| - 0.00011 22.1 0.0 0.14 12.0 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family PhoH PF02562.11 gi|330507349|ref|YP_004383777.1| - 0.00012 21.4 0.1 0.51 9.5 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein IPT PF01745.11 gi|330507349|ref|YP_004383777.1| - 0.00012 21.2 0.2 0.46 9.6 0.0 2.9 3 0 0 3 3 3 2 Isopentenyl transferase DUF2075 PF09848.4 gi|330507349|ref|YP_004383777.1| - 0.00016 20.7 0.0 0.35 9.7 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|330507349|ref|YP_004383777.1| - 0.00024 20.8 0.5 1.6 8.3 0.0 3.9 2 1 1 3 3 3 1 NTPase AAA_11 PF13086.1 gi|330507349|ref|YP_004383777.1| - 0.00044 19.8 0.0 0.76 9.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain Bac_DnaA PF00308.13 gi|330507349|ref|YP_004383777.1| - 0.00084 19.0 0.0 1.2 8.7 0.0 2.9 2 2 0 2 2 2 1 Bacterial dnaA protein AAA_30 PF13604.1 gi|330507349|ref|YP_004383777.1| - 0.0015 18.1 0.0 2.1 7.8 0.0 2.8 2 0 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|330507349|ref|YP_004383777.1| - 0.0019 18.0 0.0 1.8 8.3 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_23 PF13476.1 gi|330507349|ref|YP_004383777.1| - 0.0048 17.2 0.1 2.2 8.5 0.0 2.6 3 0 0 3 3 2 1 AAA domain UPF0079 PF02367.12 gi|330507349|ref|YP_004383777.1| - 0.0062 16.1 0.1 3.5 7.2 0.0 2.8 2 1 1 3 3 2 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|330507349|ref|YP_004383777.1| - 0.0067 15.3 0.0 0.74 8.6 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein Guanylate_kin PF00625.16 gi|330507349|ref|YP_004383777.1| - 0.0076 15.7 0.3 10 5.5 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase DEAD PF00270.24 gi|330507349|ref|YP_004383777.1| - 0.028 13.8 0.5 55 3.1 0.0 3.7 2 2 1 4 4 4 0 DEAD/DEAH box helicase AFG1_ATPase PF03969.11 gi|330507349|ref|YP_004383777.1| - 0.035 12.8 0.0 4.9 5.8 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase KAP_NTPase PF07693.9 gi|330507349|ref|YP_004383777.1| - 0.045 12.7 0.0 9.3 5.1 0.0 3.2 2 2 1 3 3 3 0 KAP family P-loop domain CPT PF07931.7 gi|330507349|ref|YP_004383777.1| - 0.081 12.5 0.0 6.4 6.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein KTI12 PF08433.5 gi|330507349|ref|YP_004383777.1| - 0.14 11.3 0.0 11 5.1 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|330507349|ref|YP_004383777.1| - 0.15 11.5 0.0 3.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.10 gi|330507349|ref|YP_004383777.1| - 0.16 10.5 0.0 11 4.5 0.0 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein Torsin PF06309.6 gi|330507349|ref|YP_004383777.1| - 0.27 11.1 0.0 19 5.1 0.0 2.4 2 0 0 2 2 2 0 Torsin PPV_E1_C PF00519.12 gi|330507349|ref|YP_004383777.1| - 0.28 9.7 0.0 6 5.3 0.0 2.0 2 0 0 2 2 2 0 Papillomavirus helicase PRC PF05239.11 gi|330507350|ref|YP_004383778.1| - 3.7e-12 45.9 3.2 4e-12 45.8 2.2 1.0 1 0 0 1 1 1 1 PRC-barrel domain Ribosom_S12_S23 PF00164.20 gi|330507350|ref|YP_004383778.1| - 0.047 13.1 0.1 0.066 12.6 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein S12/S23 Pro_isomerase PF00160.16 gi|330507351|ref|YP_004383779.1| - 3.3e-51 173.5 0.3 4e-51 173.2 0.2 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Pro_isomerase PF00160.16 gi|330507352|ref|YP_004383780.1| - 2.1e-51 174.1 0.3 2.4e-51 174.0 0.2 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD OrfB_IS605 PF01385.14 gi|330507354|ref|YP_004383782.1| - 1.1e-39 136.1 0.5 3.3e-39 134.6 0.0 1.8 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330507354|ref|YP_004383782.1| - 3.8e-24 84.1 0.1 8.4e-24 83.0 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330507354|ref|YP_004383782.1| - 2e-19 68.5 4.0 3.9e-19 67.7 2.8 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|330507354|ref|YP_004383782.1| - 0.0048 16.6 0.1 0.009 15.8 0.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330507354|ref|YP_004383782.1| - 0.048 12.8 0.9 0.12 11.6 0.6 1.7 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|330507354|ref|YP_004383782.1| - 0.12 11.7 0.8 0.68 9.3 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding DUF523 PF04463.7 gi|330507357|ref|YP_004383785.1| - 3.7e-15 55.9 0.0 6.3e-15 55.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF523) bPH_3 PF14470.1 gi|330507358|ref|YP_004383786.1| - 0.00047 20.3 0.0 0.00065 19.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain DUF1297 PF06973.7 gi|330507359|ref|YP_004383787.1| - 2.6e-76 255.1 0.0 3.4e-76 254.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|330507359|ref|YP_004383787.1| - 2.2e-41 140.4 0.0 3.4e-41 139.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|330507359|ref|YP_004383787.1| - 0.005 16.5 0.0 0.66 9.6 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp domain Aconitase_C PF00694.14 gi|330507360|ref|YP_004383788.1| - 7.7e-21 74.5 0.2 2.3e-20 73.0 0.1 1.8 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|330507360|ref|YP_004383788.1| - 0.00025 20.5 0.1 0.0028 17.0 0.1 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.15 gi|330507361|ref|YP_004383789.1| - 9.7e-99 330.6 0.0 1.1e-98 330.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase RNA_pol_Rpb5_C PF01191.14 gi|330507362|ref|YP_004383790.1| - 4.7e-28 96.5 0.0 5.1e-28 96.4 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.10 gi|330507363|ref|YP_004383791.1| - 1.8e-59 200.0 0.1 2.2e-59 199.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|330507363|ref|YP_004383791.1| - 1.1e-25 90.2 0.5 1.6e-25 89.6 0.3 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|330507363|ref|YP_004383791.1| - 1.4e-24 85.5 0.0 2.9e-24 84.6 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.23 gi|330507364|ref|YP_004383792.1| - 8.8e-121 403.2 0.0 1.1e-120 402.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|330507364|ref|YP_004383792.1| - 1.2e-27 95.9 0.1 4.9e-27 94.0 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|330507364|ref|YP_004383792.1| - 2.1e-20 72.2 0.1 4.4e-20 71.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|330507364|ref|YP_004383792.1| - 6.4e-15 54.8 2.8 1.2e-14 53.9 1.9 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 zf-ribbon_3 PF13248.1 gi|330507364|ref|YP_004383792.1| - 0.0014 17.7 0.3 0.0028 16.7 0.2 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|330507364|ref|YP_004383792.1| - 0.014 15.0 0.3 7.4 6.3 0.0 2.6 2 0 0 2 2 2 0 Nudix N-terminal DZR PF12773.2 gi|330507364|ref|YP_004383792.1| - 0.021 14.6 0.1 0.044 13.6 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|330507364|ref|YP_004383792.1| - 0.058 12.9 0.6 0.83 9.2 0.1 2.7 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.7 gi|330507364|ref|YP_004383792.1| - 0.066 12.9 0.8 0.12 12.1 0.6 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.1 gi|330507364|ref|YP_004383792.1| - 0.073 12.5 0.9 4.3 6.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|330507364|ref|YP_004383792.1| - 0.18 11.2 0.2 0.32 10.5 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain RNA_pol_Rpb1_1 PF04997.7 gi|330507365|ref|YP_004383793.1| - 1.3e-89 300.8 0.0 5.5e-53 180.3 0.0 2.3 1 1 1 2 2 2 2 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|330507365|ref|YP_004383793.1| - 1.9e-66 223.1 0.1 3.2e-66 222.3 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|330507365|ref|YP_004383793.1| - 8.7e-33 113.2 0.0 1.6e-32 112.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|330507365|ref|YP_004383793.1| - 8.3e-32 109.1 0.0 2e-31 107.9 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|330507365|ref|YP_004383793.1| - 3.4e-30 105.2 0.2 5.7e-30 104.5 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_5 PF04998.12 gi|330507366|ref|YP_004383794.1| - 2.2e-51 174.7 1.0 3.3e-51 174.1 0.7 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 NAC PF01849.13 gi|330507366|ref|YP_004383794.1| - 0.0026 17.2 0.3 0.0076 15.7 0.2 1.8 1 0 0 1 1 1 1 NAC domain Sigma70_r1_1 PF03979.9 gi|330507366|ref|YP_004383794.1| - 0.073 13.0 1.2 7.3 6.6 0.1 2.7 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 Ribosomal_L9_C PF03948.9 gi|330507366|ref|YP_004383794.1| - 0.13 12.3 3.2 2.3 8.3 0.1 3.7 3 1 0 3 3 3 0 Ribosomal protein L9, C-terminal domain Ribosomal_L7Ae PF01248.21 gi|330507367|ref|YP_004383795.1| - 2.6e-11 42.8 0.0 3.4e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|330507368|ref|YP_004383796.1| - 2e-21 75.3 5.9 3.8e-16 58.4 0.9 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|330507368|ref|YP_004383796.1| - 3.6e-15 55.5 3.5 3.8e-15 55.4 0.9 1.9 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|330507368|ref|YP_004383796.1| - 9.7e-10 37.9 1.0 9.4e-05 21.9 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|330507368|ref|YP_004383796.1| - 9.7e-06 25.1 2.4 0.0019 17.8 0.5 2.3 2 0 0 2 2 2 2 KH domain DUF4162 PF13732.1 gi|330507368|ref|YP_004383796.1| - 0.051 14.0 0.4 0.083 13.4 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) KH_3 PF13014.1 gi|330507368|ref|YP_004383796.1| - 5.5 6.7 10.0 0.37 10.4 0.5 2.9 3 0 0 3 3 3 0 KH domain Ribosom_S12_S23 PF00164.20 gi|330507369|ref|YP_004383797.1| - 1.5e-38 130.9 0.1 1.7e-38 130.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 NTase_sub_bind PF08780.6 gi|330507369|ref|YP_004383797.1| - 0.16 11.7 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like Ribosomal_S7 PF00177.16 gi|330507370|ref|YP_004383798.1| - 1.2e-39 135.2 6.9 1.4e-39 135.0 4.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosomal_L13 PF00572.13 gi|330507370|ref|YP_004383798.1| - 0.015 15.3 0.7 0.026 14.5 0.5 1.4 1 0 0 1 1 1 0 Ribosomal protein L13 Methyltransf_11 PF08241.7 gi|330507371|ref|YP_004383799.1| - 4.7e-19 68.6 0.0 7.2e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330507371|ref|YP_004383799.1| - 6e-11 42.3 0.0 8e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507371|ref|YP_004383799.1| - 4.8e-09 36.4 0.0 9e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507371|ref|YP_004383799.1| - 3.9e-08 33.6 0.0 5.5e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330507371|ref|YP_004383799.1| - 4.1e-07 29.7 0.0 5.3e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330507371|ref|YP_004383799.1| - 1.6e-05 25.4 0.0 2.5e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330507371|ref|YP_004383799.1| - 2.1e-05 23.7 0.0 3.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|330507371|ref|YP_004383799.1| - 5.1e-05 23.2 0.0 0.00011 22.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|330507371|ref|YP_004383799.1| - 0.0078 15.8 0.0 0.014 15.0 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.9 gi|330507371|ref|YP_004383799.1| - 0.037 13.4 0.0 0.086 12.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase small domain MetW PF07021.7 gi|330507371|ref|YP_004383799.1| - 0.038 13.3 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FtsX PF02687.16 gi|330507372|ref|YP_004383800.1| - 3.5e-23 81.6 9.3 3.5e-23 81.6 6.4 2.2 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|330507372|ref|YP_004383800.1| - 5.7e-22 78.4 0.3 5.7e-22 78.4 0.2 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain DUF3379 PF11859.3 gi|330507372|ref|YP_004383800.1| - 0.079 12.1 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3379) MacB_PCD PF12704.2 gi|330507373|ref|YP_004383801.1| - 2.8e-27 95.8 1.0 5.5e-27 94.8 0.7 1.5 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|330507373|ref|YP_004383801.1| - 3e-24 85.1 17.4 3.9e-24 84.7 9.9 2.1 2 0 0 2 2 2 1 FtsX-like permease family ABC2_membrane_3 PF12698.2 gi|330507373|ref|YP_004383801.1| - 0.001 18.1 2.9 0.001 18.1 2.0 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein Antitoxin-MazE PF04014.13 gi|330507373|ref|YP_004383801.1| - 0.11 12.2 0.1 0.3 10.8 0.0 1.8 2 0 0 2 2 2 0 Antidote-toxin recognition MazE ABC_tran PF00005.22 gi|330507374|ref|YP_004383802.1| - 1.7e-32 112.5 0.0 2.5e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|330507374|ref|YP_004383802.1| - 6e-10 38.7 1.2 1.1e-08 34.5 0.8 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|330507374|ref|YP_004383802.1| - 6.4e-09 36.1 0.2 0.00036 20.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|330507374|ref|YP_004383802.1| - 5.1e-07 29.8 0.2 3.6e-06 27.0 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|330507374|ref|YP_004383802.1| - 7.2e-06 25.4 0.2 1.5e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|330507374|ref|YP_004383802.1| - 0.00011 21.7 0.4 0.0012 18.3 0.1 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|330507374|ref|YP_004383802.1| - 0.00013 22.1 0.7 0.0011 19.1 0.5 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|330507374|ref|YP_004383802.1| - 0.00036 19.7 0.1 0.00081 18.6 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|330507374|ref|YP_004383802.1| - 0.00064 20.5 0.0 0.0022 18.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|330507374|ref|YP_004383802.1| - 0.00084 19.7 0.0 0.0023 18.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|330507374|ref|YP_004383802.1| - 0.0036 17.1 0.4 0.0096 15.7 0.3 1.9 1 1 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|330507374|ref|YP_004383802.1| - 0.0049 16.2 0.0 2.2 7.6 0.0 2.2 2 0 0 2 2 2 2 MutS domain V AAA_25 PF13481.1 gi|330507374|ref|YP_004383802.1| - 0.0058 16.0 0.1 0.023 14.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|330507374|ref|YP_004383802.1| - 0.0058 16.5 0.2 0.019 14.8 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase NACHT PF05729.7 gi|330507374|ref|YP_004383802.1| - 0.0092 15.6 0.1 0.051 13.2 0.0 2.0 2 0 0 2 2 2 1 NACHT domain MobB PF03205.9 gi|330507374|ref|YP_004383802.1| - 0.0094 15.6 0.1 0.023 14.3 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|330507374|ref|YP_004383802.1| - 0.032 14.5 0.5 0.1 12.8 0.1 2.0 2 1 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|330507374|ref|YP_004383802.1| - 0.044 13.4 0.0 0.37 10.4 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase KaiC PF06745.8 gi|330507374|ref|YP_004383802.1| - 0.058 12.5 0.4 7.5 5.5 0.0 2.1 2 0 0 2 2 2 0 KaiC cobW PF02492.14 gi|330507374|ref|YP_004383802.1| - 0.071 12.5 0.5 0.47 9.8 0.1 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GBP PF02263.14 gi|330507374|ref|YP_004383802.1| - 0.077 12.0 0.2 2.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain NTPase_1 PF03266.10 gi|330507374|ref|YP_004383802.1| - 0.081 12.6 0.4 4.3 7.0 0.0 2.3 2 0 0 2 2 2 0 NTPase FtsK_SpoIIIE PF01580.13 gi|330507374|ref|YP_004383802.1| - 0.091 12.2 0.1 0.21 11.0 0.1 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|330507374|ref|YP_004383802.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.17 gi|330507374|ref|YP_004383802.1| - 0.16 10.8 0.9 0.19 10.5 0.1 1.4 2 0 0 2 2 2 0 NB-ARC domain MCH PF02289.11 gi|330507376|ref|YP_004383804.1| - 6e-124 413.1 0.1 6.8e-124 412.9 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) GTP_EFTU_D2 PF03144.20 gi|330507377|ref|YP_004383805.1| - 9.5e-11 41.6 2.0 1.9e-10 40.6 1.1 1.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|330507377|ref|YP_004383805.1| - 4.3e-07 29.4 0.1 8.9e-07 28.4 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 DUF364 PF04016.7 gi|330507378|ref|YP_004383806.1| - 1e-12 47.5 0.0 1.5e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) SBP_bac_11 PF13531.1 gi|330507379|ref|YP_004383807.1| - 3.8e-43 147.7 0.0 4.5e-43 147.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|330507379|ref|YP_004383807.1| - 2.7e-06 26.8 0.0 1.3e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|330507379|ref|YP_004383807.1| - 4.5e-05 23.3 0.0 0.00082 19.1 0.0 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|330507379|ref|YP_004383807.1| - 0.0026 17.5 0.0 0.0055 16.4 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|330507379|ref|YP_004383807.1| - 0.0058 15.6 0.0 0.016 14.1 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain LysR_substrate PF03466.15 gi|330507379|ref|YP_004383807.1| - 0.048 12.7 0.0 0.098 11.7 0.0 1.6 1 0 0 1 1 1 0 LysR substrate binding domain Glycos_transf_3 PF00591.16 gi|330507380|ref|YP_004383808.1| - 2.5e-99 331.7 2.0 3.4e-99 331.3 1.4 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|330507380|ref|YP_004383808.1| - 1.2e-18 66.4 2.5 1.9e-18 65.7 0.8 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.17 gi|330507381|ref|YP_004383809.1| - 1.8e-35 122.2 0.0 2.1e-35 122.1 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMO PF03060.10 gi|330507381|ref|YP_004383809.1| - 0.00022 20.4 3.1 0.0091 15.1 2.2 2.1 1 1 0 1 1 1 1 Nitronate monooxygenase TMP-TENI PF02581.12 gi|330507381|ref|YP_004383809.1| - 0.0004 19.5 0.2 0.00081 18.5 0.1 1.5 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI Glyco_trans_4_4 PF13579.1 gi|330507381|ref|YP_004383809.1| - 0.021 14.9 0.1 0.038 14.1 0.1 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain FMN_dh PF01070.13 gi|330507381|ref|YP_004383809.1| - 0.044 12.6 0.8 3.5 6.3 0.4 2.2 2 1 0 2 2 2 0 FMN-dependent dehydrogenase Autophagy_act_C PF03987.10 gi|330507381|ref|YP_004383809.1| - 0.12 12.5 0.2 2.5 8.3 0.2 2.2 2 0 0 2 2 2 0 Autophagocytosis associated protein, active-site domain Chorismate_bind PF00425.13 gi|330507382|ref|YP_004383810.1| - 4.5e-94 314.5 0.0 2.5e-92 308.8 0.0 2.7 2 1 1 3 3 3 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|330507382|ref|YP_004383810.1| - 1.8e-31 109.0 0.1 4.4e-29 101.2 0.0 3.1 2 1 0 2 2 2 2 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|330507383|ref|YP_004383811.1| - 7e-45 152.8 0.0 7.8e-45 152.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|330507383|ref|YP_004383811.1| - 3.8e-14 52.6 0.2 2.5e-13 49.9 0.2 1.9 1 1 0 1 1 1 1 Peptidase C26 Ribosomal_S27 PF01599.14 gi|330507383|ref|YP_004383811.1| - 0.093 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S27a IGPS PF00218.16 gi|330507384|ref|YP_004383812.1| - 3.4e-62 209.7 0.0 3.9e-62 209.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|330507384|ref|YP_004383812.1| - 0.0011 17.9 0.1 0.0031 16.4 0.0 1.8 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.14 gi|330507384|ref|YP_004383812.1| - 0.0024 17.4 0.1 0.0043 16.5 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PcrB PF01884.12 gi|330507384|ref|YP_004383812.1| - 0.0032 16.7 0.0 0.0061 15.8 0.0 1.4 1 0 0 1 1 1 1 PcrB family FMN_dh PF01070.13 gi|330507384|ref|YP_004383812.1| - 0.0049 15.7 0.2 0.007 15.2 0.2 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase DHO_dh PF01180.16 gi|330507384|ref|YP_004383812.1| - 0.013 14.4 0.0 0.027 13.4 0.0 1.4 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase AP_endonuc_2 PF01261.19 gi|330507384|ref|YP_004383812.1| - 0.029 13.6 0.3 0.94 8.7 0.1 2.7 1 1 0 2 2 2 0 Xylose isomerase-like TIM barrel His_biosynth PF00977.16 gi|330507384|ref|YP_004383812.1| - 0.033 13.4 0.0 0.097 11.9 0.0 1.7 1 1 0 1 1 1 0 Histidine biosynthesis protein IMPDH PF00478.20 gi|330507384|ref|YP_004383812.1| - 0.053 12.4 0.0 0.095 11.5 0.0 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PEP_mutase PF13714.1 gi|330507384|ref|YP_004383812.1| - 0.064 12.4 1.9 0.12 11.5 0.3 1.9 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase PucR PF07905.6 gi|330507384|ref|YP_004383812.1| - 0.12 11.9 0.3 1.5 8.4 0.0 2.8 2 1 2 4 4 4 0 Purine catabolism regulatory protein-like family NTP_transf_2 PF01909.18 gi|330507385|ref|YP_004383813.1| - 2.1e-12 47.1 0.7 2.3e-12 47.0 0.5 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|330507385|ref|YP_004383813.1| - 0.14 11.4 0.0 0.18 11.1 0.0 1.1 1 0 0 1 1 1 0 Predicted nucleotidyltransferase UPF0150 PF03681.10 gi|330507388|ref|YP_004383816.1| - 9.2e-05 21.9 2.6 0.00011 21.6 1.8 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF2680 PF10925.3 gi|330507388|ref|YP_004383816.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) YcfA PF07927.7 gi|330507389|ref|YP_004383817.1| - 1.8e-05 24.5 0.0 2.1e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 YcfA-like protein TIR_2 PF13676.1 gi|330507390|ref|YP_004383818.1| - 9.1e-15 54.6 0.0 2.1e-14 53.4 0.0 1.6 2 0 0 2 2 2 1 TIR domain Terpene_synth_C PF03936.11 gi|330507390|ref|YP_004383818.1| - 0.00013 21.2 0.1 0.00025 20.3 0.1 1.4 1 0 0 1 1 1 1 Terpene synthase family, metal binding domain Holin_LLH PF09682.5 gi|330507390|ref|YP_004383818.1| - 0.027 14.5 2.6 0.058 13.5 0.2 2.3 1 1 0 2 2 2 0 Phage holin protein (Holin_LLH) Fijivirus_P9-2 PF06837.6 gi|330507390|ref|YP_004383818.1| - 0.19 10.8 1.1 0.83 8.7 0.1 2.1 1 1 1 2 2 2 0 Fijivirus P9-2 protein Transposase_mut PF00872.13 gi|330507391|ref|YP_004383819.1| - 1.7e-19 69.6 0.1 1.9e-19 69.4 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family HTH_12 PF08461.5 gi|330507391|ref|YP_004383819.1| - 0.044 13.5 0.7 0.23 11.2 0.2 2.2 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HD PF01966.17 gi|330507392|ref|YP_004383820.1| - 1.6e-17 63.6 0.1 5e-17 62.0 0.1 1.8 1 0 0 1 1 1 1 HD domain HD_assoc PF13286.1 gi|330507392|ref|YP_004383820.1| - 1.2e-13 51.0 1.1 1.5e-06 28.3 0.1 3.4 3 0 0 3 3 3 2 Phosphohydrolase-associated domain MyTH4 PF00784.12 gi|330507392|ref|YP_004383820.1| - 0.23 11.3 1.4 0.76 9.7 0.0 2.5 2 0 0 2 2 2 0 MyTH4 domain DUF460 PF04312.8 gi|330507393|ref|YP_004383821.1| - 3.2e-45 153.0 0.5 2.8e-44 150.0 0.0 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF460) IncA PF04156.9 gi|330507393|ref|YP_004383821.1| - 0.00011 21.8 0.7 0.00011 21.8 0.5 2.3 2 0 0 2 2 2 1 IncA protein DUF641 PF04859.7 gi|330507393|ref|YP_004383821.1| - 0.00029 20.6 1.0 0.00029 20.6 0.7 3.3 2 1 1 3 3 3 2 Plant protein of unknown function (DUF641) CENP-Q PF13094.1 gi|330507393|ref|YP_004383821.1| - 0.0016 18.4 4.9 0.0016 18.4 3.4 3.0 2 1 1 3 3 3 1 CENP-Q, a CENPA-CAD centromere complex subunit Fib_alpha PF08702.5 gi|330507393|ref|YP_004383821.1| - 0.0069 16.5 4.0 0.017 15.2 2.7 1.6 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family DUF3450 PF11932.3 gi|330507393|ref|YP_004383821.1| - 0.013 14.8 0.9 0.013 14.8 0.6 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) LPP PF04728.8 gi|330507393|ref|YP_004383821.1| - 0.034 13.9 0.4 0.073 12.8 0.2 1.5 1 0 0 1 1 1 0 Lipoprotein leucine-zipper DNA_methylase PF00145.12 gi|330507393|ref|YP_004383821.1| - 0.049 12.7 0.2 0.42 9.6 0.0 2.1 2 0 0 2 2 2 0 C-5 cytosine-specific DNA methylase NPV_P10 PF05531.7 gi|330507393|ref|YP_004383821.1| - 0.064 13.5 0.4 0.15 12.3 0.3 1.6 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein RIO1 PF01163.17 gi|330507394|ref|YP_004383822.1| - 5.9e-41 139.9 0.0 8.4e-41 139.4 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|330507394|ref|YP_004383822.1| - 7.3e-25 86.8 0.0 8.7e-24 83.4 0.0 2.5 3 0 0 3 3 3 1 Rio2, N-terminal APH PF01636.18 gi|330507394|ref|YP_004383822.1| - 1.7e-06 27.9 5.3 0.0035 17.1 0.3 2.6 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|330507394|ref|YP_004383822.1| - 0.046 12.8 0.0 0.08 12.0 0.0 1.4 1 1 0 1 1 1 0 Protein kinase domain Iso_dh PF00180.15 gi|330507395|ref|YP_004383823.1| - 1.5e-70 237.8 0.0 2.3e-70 237.2 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase NTP_transferase PF00483.18 gi|330507396|ref|YP_004383824.1| - 1e-32 113.4 0.0 1.5e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|330507396|ref|YP_004383824.1| - 6.6e-08 31.7 12.0 0.0095 15.4 0.6 4.9 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|330507396|ref|YP_004383824.1| - 0.00093 19.3 0.0 0.0015 18.6 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|330507396|ref|YP_004383824.1| - 0.011 15.2 1.0 0.011 15.2 0.7 3.6 2 2 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase UDG PF03167.14 gi|330507398|ref|YP_004383826.1| - 3.7e-41 140.1 0.0 4.7e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Aconitase PF00330.15 gi|330507399|ref|YP_004383827.1| - 8.4e-84 281.6 0.3 1.9e-57 194.8 0.0 2.0 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|330507399|ref|YP_004383827.1| - 0.082 11.4 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) PseudoU_synth_1 PF01416.15 gi|330507400|ref|YP_004383828.1| - 1.2e-27 96.3 0.0 7e-17 61.7 0.0 2.6 2 1 0 2 2 2 2 tRNA pseudouridine synthase Flavodoxin_1 PF00258.20 gi|330507401|ref|YP_004383829.1| - 1.1e-11 44.8 0.0 1.5e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|330507401|ref|YP_004383829.1| - 1.5e-09 37.9 0.0 1.6e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|330507401|ref|YP_004383829.1| - 0.00091 18.7 0.4 0.0093 15.4 0.3 2.0 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.2 gi|330507401|ref|YP_004383829.1| - 0.0056 16.1 0.1 0.0077 15.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|330507401|ref|YP_004383829.1| - 0.015 14.6 0.1 1.3 8.3 0.0 2.1 1 1 1 2 2 2 0 Flavodoxin Methyltransf_31 PF13847.1 gi|330507402|ref|YP_004383830.1| - 3.3e-17 62.4 0.0 4.3e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330507402|ref|YP_004383830.1| - 2.7e-16 60.1 0.0 3.9e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507402|ref|YP_004383830.1| - 8e-16 58.3 0.0 1.2e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330507402|ref|YP_004383830.1| - 3.4e-13 49.6 0.0 4.2e-13 49.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507402|ref|YP_004383830.1| - 6.4e-13 48.9 0.0 1.1e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507402|ref|YP_004383830.1| - 2.5e-12 47.1 0.0 3.7e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330507402|ref|YP_004383830.1| - 8.1e-11 41.4 0.0 9.5e-11 41.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|330507402|ref|YP_004383830.1| - 8.8e-10 38.1 0.0 1.1e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|330507402|ref|YP_004383830.1| - 2.3e-08 34.0 0.0 4e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|330507402|ref|YP_004383830.1| - 2.9e-07 30.2 0.0 4.4e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|330507402|ref|YP_004383830.1| - 2.5e-06 26.9 0.0 3.5e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|330507402|ref|YP_004383830.1| - 1.3e-05 24.4 0.0 1.8e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.6 gi|330507402|ref|YP_004383830.1| - 3.8e-05 23.1 0.0 5.5e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.15 gi|330507402|ref|YP_004383830.1| - 4.4e-05 22.6 0.0 6.1e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.6 gi|330507402|ref|YP_004383830.1| - 0.0011 17.7 0.0 0.0016 17.1 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.12 gi|330507402|ref|YP_004383830.1| - 0.0023 16.9 0.0 0.0035 16.4 0.0 1.4 1 1 0 1 1 1 1 Putative methyltransferase FtsJ PF01728.14 gi|330507402|ref|YP_004383830.1| - 0.0034 17.3 0.0 0.013 15.4 0.0 1.9 1 1 0 1 1 1 1 FtsJ-like methyltransferase Met_10 PF02475.11 gi|330507402|ref|YP_004383830.1| - 0.0053 16.3 0.0 0.0082 15.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein DREV PF05219.7 gi|330507402|ref|YP_004383830.1| - 0.025 13.4 0.0 0.038 12.8 0.0 1.6 1 1 0 1 1 1 0 DREV methyltransferase DUF938 PF06080.7 gi|330507402|ref|YP_004383830.1| - 0.03 13.8 0.0 0.085 12.3 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF938) GCD14 PF08704.5 gi|330507402|ref|YP_004383830.1| - 0.093 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit UPF0020 PF01170.13 gi|330507402|ref|YP_004383830.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF3419 PF11899.3 gi|330507402|ref|YP_004383830.1| - 0.14 10.8 0.0 1.4 7.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3419) ChlI PF13541.1 gi|330507403|ref|YP_004383831.1| - 0.0067 15.9 0.2 0.012 15.1 0.1 1.4 1 1 0 1 1 1 1 Subunit ChlI of Mg-chelatase CdhD PF03599.11 gi|330507404|ref|YP_004383832.1| - 3.3e-128 427.4 0.1 3.9e-128 427.2 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|330507404|ref|YP_004383832.1| - 1e-13 50.6 1.9 1e-13 50.6 1.3 1.8 2 0 0 2 2 2 1 Putative Fe-S cluster YhfH PF14149.1 gi|330507404|ref|YP_004383832.1| - 0.046 13.5 1.0 0.094 12.5 0.7 1.4 1 0 0 1 1 1 0 YhfH-like protein CdhD PF03599.11 gi|330507405|ref|YP_004383833.1| - 7.1e-77 258.4 0.4 4.9e-73 245.8 0.0 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit HSP70 PF00012.15 gi|330507405|ref|YP_004383833.1| - 0.036 11.9 0.0 0.058 11.3 0.0 1.2 1 0 0 1 1 1 0 Hsp70 protein Pterin_bind PF00809.17 gi|330507405|ref|YP_004383833.1| - 0.06 12.7 0.3 0.46 9.8 0.2 2.1 1 1 0 1 1 1 0 Pterin binding enzyme CbiA PF01656.18 gi|330507406|ref|YP_004383834.1| - 9.9e-31 106.6 0.3 1.2e-30 106.4 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|330507406|ref|YP_004383834.1| - 1.8e-08 33.7 0.6 6.8e-08 31.9 0.4 2.0 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|330507406|ref|YP_004383834.1| - 1.3e-06 27.8 0.0 0.00059 19.1 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|330507406|ref|YP_004383834.1| - 2.6e-05 24.1 0.1 0.00028 20.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|330507406|ref|YP_004383834.1| - 0.00018 20.6 0.5 0.73 8.8 0.0 3.0 2 1 1 3 3 3 2 ATPase MipZ SRP54 PF00448.17 gi|330507406|ref|YP_004383834.1| - 0.00024 20.6 0.4 0.022 14.2 0.2 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|330507406|ref|YP_004383834.1| - 0.00035 21.3 1.1 0.018 15.8 0.8 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330507406|ref|YP_004383834.1| - 0.00069 19.6 0.0 0.0017 18.3 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|330507406|ref|YP_004383834.1| - 0.00078 19.1 0.1 0.0018 18.0 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain DUF87 PF01935.12 gi|330507406|ref|YP_004383834.1| - 0.001 18.9 0.2 0.0034 17.2 0.1 1.8 1 1 1 2 2 2 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|330507406|ref|YP_004383834.1| - 0.001 19.1 0.1 0.0039 17.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|330507406|ref|YP_004383834.1| - 0.0015 17.5 0.0 0.0032 16.4 0.0 1.7 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|330507406|ref|YP_004383834.1| - 0.0028 17.2 0.0 0.0046 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|330507406|ref|YP_004383834.1| - 0.0031 16.9 0.0 0.032 13.6 0.0 2.0 1 1 0 1 1 1 1 YhjQ protein ArgK PF03308.11 gi|330507406|ref|YP_004383834.1| - 0.0031 16.3 0.0 0.0049 15.6 0.0 1.4 1 0 0 1 1 1 1 ArgK protein NTPase_1 PF03266.10 gi|330507406|ref|YP_004383834.1| - 0.004 16.8 0.1 0.4 10.3 0.0 2.4 2 1 0 2 2 2 1 NTPase AAA_26 PF13500.1 gi|330507406|ref|YP_004383834.1| - 0.0042 16.7 0.3 2.5 7.6 0.1 2.4 2 1 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|330507406|ref|YP_004383834.1| - 0.005 17.1 0.0 0.0078 16.5 0.0 1.6 1 1 0 1 1 1 1 ABC transporter MobB PF03205.9 gi|330507406|ref|YP_004383834.1| - 0.0064 16.1 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|330507406|ref|YP_004383834.1| - 0.009 15.4 1.1 0.05 12.9 0.4 2.3 2 1 0 2 2 2 1 AAA domain KAP_NTPase PF07693.9 gi|330507406|ref|YP_004383834.1| - 0.016 14.2 0.0 0.023 13.7 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain T2SE PF00437.15 gi|330507406|ref|YP_004383834.1| - 0.018 13.9 0.2 0.048 12.5 0.1 1.7 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|330507406|ref|YP_004383834.1| - 0.024 14.9 0.6 0.3 11.3 0.2 2.6 1 1 1 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|330507406|ref|YP_004383834.1| - 0.03 13.9 0.0 0.052 13.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_14 PF13173.1 gi|330507406|ref|YP_004383834.1| - 0.037 13.9 0.0 0.1 12.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain RecA PF00154.16 gi|330507406|ref|YP_004383834.1| - 0.043 12.8 0.4 0.11 11.4 0.0 1.8 2 1 0 2 2 2 0 recA bacterial DNA recombination protein AAA_24 PF13479.1 gi|330507406|ref|YP_004383834.1| - 0.047 13.2 0.0 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|330507406|ref|YP_004383834.1| - 0.066 13.3 0.0 0.63 10.2 0.0 2.3 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.17 gi|330507406|ref|YP_004383834.1| - 0.068 12.0 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain LpxK PF02606.9 gi|330507406|ref|YP_004383834.1| - 0.071 12.0 0.1 0.15 11.0 0.1 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase cobW PF02492.14 gi|330507406|ref|YP_004383834.1| - 0.073 12.5 0.5 1.4 8.2 0.3 2.3 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PRK PF00485.13 gi|330507406|ref|YP_004383834.1| - 0.087 12.3 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family FBPase_glpX PF03320.8 gi|330507406|ref|YP_004383834.1| - 0.12 10.9 0.3 2.2 6.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CdhC PF03598.10 gi|330507407|ref|YP_004383835.1| - 1.3e-168 560.7 0.0 1.8e-168 560.3 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CO_dh PF02552.11 gi|330507408|ref|YP_004383836.1| - 8.9e-37 126.2 0.0 1e-36 125.9 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|330507408|ref|YP_004383836.1| - 0.0017 18.1 0.0 0.0049 16.6 0.0 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.15 gi|330507409|ref|YP_004383837.1| - 2.6e-90 303.2 10.2 1.5e-77 261.2 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_18 PF13746.1 gi|330507409|ref|YP_004383837.1| - 5e-10 39.6 4.1 0.00042 20.6 0.5 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330507409|ref|YP_004383837.1| - 1.3e-05 25.3 12.4 0.0032 17.7 0.3 3.3 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330507409|ref|YP_004383837.1| - 1.6e-05 24.8 11.0 1.6e-05 24.8 7.6 2.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330507409|ref|YP_004383837.1| - 4.8e-05 23.0 22.8 0.00046 19.9 9.1 3.9 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330507409|ref|YP_004383837.1| - 9.1e-05 22.7 10.6 9.1e-05 22.7 7.3 3.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330507409|ref|YP_004383837.1| - 0.00012 22.2 13.5 0.00012 22.2 9.4 3.7 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330507409|ref|YP_004383837.1| - 0.00096 18.9 11.3 0.00096 18.9 7.8 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330507409|ref|YP_004383837.1| - 0.0065 16.3 18.0 0.06 13.2 1.7 3.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|330507409|ref|YP_004383837.1| - 0.063 12.9 9.7 0.046 13.3 0.6 2.6 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.2 gi|330507409|ref|YP_004383837.1| - 0.069 13.5 22.1 0.17 12.2 1.3 3.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|330507409|ref|YP_004383837.1| - 0.25 11.0 27.0 0.02 14.4 2.3 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330507409|ref|YP_004383837.1| - 4.2 8.1 18.6 33 5.3 2.6 3.5 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain CobD_Cbib PF03186.8 gi|330507410|ref|YP_004383838.1| - 8.8e-90 300.7 1.5 1e-89 300.5 1.0 1.0 1 0 0 1 1 1 1 CobD/Cbib protein YtxC PF08812.6 gi|330507411|ref|YP_004383839.1| - 0.023 14.1 0.2 0.039 13.4 0.1 1.5 1 1 0 1 1 1 0 YtxC-like family TPR_12 PF13424.1 gi|330507412|ref|YP_004383840.1| - 6.4e-139 452.1 85.6 1.1e-15 57.2 0.5 15.9 7 1 8 18 18 18 18 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330507412|ref|YP_004383840.1| - 1.4e-85 280.9 77.6 1.6e-09 37.2 0.7 16.9 13 3 4 17 17 17 15 TPR repeat TPR_1 PF00515.23 gi|330507412|ref|YP_004383840.1| - 9.2e-79 256.1 77.0 1.1e-06 28.0 0.1 26.3 27 0 0 27 27 27 21 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330507412|ref|YP_004383840.1| - 1.7e-75 242.9 98.8 5.6e-05 22.7 0.3 27.0 28 0 0 28 28 27 20 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330507412|ref|YP_004383840.1| - 1.9e-66 214.6 90.0 0.00021 20.8 0.2 27.9 29 0 0 29 29 28 15 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330507412|ref|YP_004383840.1| - 1.2e-49 164.8 91.2 9.8e-05 22.1 0.5 25.2 26 0 0 26 26 26 15 Tetratricopeptide repeat SNAP PF14938.1 gi|330507412|ref|YP_004383840.1| - 3.4e-49 167.5 20.3 5.3e-09 35.6 0.1 10.1 4 1 6 11 11 11 10 Soluble NSF attachment protein, SNAP TPR_8 PF13181.1 gi|330507412|ref|YP_004383840.1| - 1.6e-39 130.6 63.4 0.0044 16.7 0.0 25.1 24 1 1 25 25 25 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330507412|ref|YP_004383840.1| - 4.8e-37 125.8 80.4 0.00021 21.8 0.6 15.8 11 4 4 16 16 16 11 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330507412|ref|YP_004383840.1| - 7.5e-34 113.1 82.1 0.066 13.8 0.0 24.8 17 6 9 27 27 25 9 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330507412|ref|YP_004383840.1| - 3.6e-22 77.2 62.7 0.092 13.2 0.1 22.1 24 2 1 25 25 20 4 Tetratricopeptide repeat RPN7 PF10602.4 gi|330507412|ref|YP_004383840.1| - 5.7e-20 71.4 8.5 0.023 14.1 0.0 10.2 4 2 5 10 10 10 6 26S proteasome subunit RPN7 TPR_4 PF07721.9 gi|330507412|ref|YP_004383840.1| - 2.6e-19 67.5 73.5 0.027 14.8 0.1 21.7 25 0 0 25 25 20 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330507412|ref|YP_004383840.1| - 2.9e-19 69.1 72.0 0.0029 17.9 0.0 16.1 10 4 10 20 20 19 9 Tetratricopeptide repeat Apc3 PF12895.2 gi|330507412|ref|YP_004383840.1| - 8.7e-16 57.8 39.5 0.0015 18.6 0.4 12.9 8 4 4 13 13 13 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.1 gi|330507412|ref|YP_004383840.1| - 1e-11 44.0 49.7 2.9 8.3 0.0 21.7 24 2 1 25 25 23 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|330507412|ref|YP_004383840.1| - 2.7e-10 39.7 38.5 0.00084 18.4 0.0 11.8 5 5 5 12 12 12 3 Tetratricopeptide repeat PPR PF01535.15 gi|330507412|ref|YP_004383840.1| - 2.7e-08 33.2 17.0 13 6.0 0.0 13.5 14 1 0 14 14 10 0 PPR repeat Apc5 PF12862.2 gi|330507412|ref|YP_004383840.1| - 5.3e-08 32.5 13.0 0.049 13.4 0.1 8.0 7 2 1 8 8 7 2 Anaphase-promoting complex subunit 5 Foie-gras_1 PF11817.3 gi|330507412|ref|YP_004383840.1| - 2.4e-07 30.4 14.1 0.16 11.3 0.0 7.1 7 1 0 7 7 7 1 Foie gras liver health family 1 MIT PF04212.13 gi|330507412|ref|YP_004383840.1| - 1.2e-05 25.0 45.0 1.8 8.5 0.0 16.1 17 4 2 20 20 19 2 MIT (microtubule interacting and transport) domain DUF2225 PF09986.4 gi|330507412|ref|YP_004383840.1| - 1.6e-05 24.4 7.0 1.5 8.1 0.0 7.6 8 2 3 11 11 11 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_3 PF07720.7 gi|330507412|ref|YP_004383840.1| - 0.00072 19.2 18.4 1.7 8.5 0.0 10.2 14 0 0 14 14 9 1 Tetratricopeptide repeat Tricorn_C1 PF14684.1 gi|330507412|ref|YP_004383840.1| - 0.002 17.9 0.7 0.13 12.1 0.0 4.0 5 0 0 5 5 2 1 Tricorn protease C1 domain PPR_2 PF13041.1 gi|330507412|ref|YP_004383840.1| - 0.032 14.2 6.0 75 3.4 0.0 7.6 9 0 0 9 9 5 0 PPR repeat family TPR_21 PF09976.4 gi|330507412|ref|YP_004383840.1| - 0.083 12.8 38.5 0.39 10.6 1.1 9.9 8 3 4 12 12 11 0 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330507412|ref|YP_004383840.1| - 0.12 12.2 62.5 4.3 7.2 0.0 15.9 13 5 1 15 15 15 0 Tetratricopeptide repeat Tcf25 PF04910.9 gi|330507412|ref|YP_004383840.1| - 0.29 10.0 1.6 27 3.5 0.0 4.2 5 0 0 5 5 5 0 Transcriptional repressor TCF25 SHNi-TPR PF10516.4 gi|330507412|ref|YP_004383840.1| - 1.3 8.3 15.2 5.5 6.3 0.0 7.3 9 0 0 9 9 6 0 SHNi-TPR Fer4 PF00037.22 gi|330507413|ref|YP_004383841.1| - 4.1e-14 51.4 13.5 1e-07 31.2 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330507413|ref|YP_004383841.1| - 5.2e-13 49.1 37.2 6.1e-08 32.9 10.1 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330507413|ref|YP_004383841.1| - 1.1e-11 43.9 15.7 6.4e-07 28.9 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330507413|ref|YP_004383841.1| - 1.4e-10 41.2 23.7 9.3e-08 32.2 9.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330507413|ref|YP_004383841.1| - 1.5e-10 40.7 10.0 2.1e-10 40.2 6.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330507413|ref|YP_004383841.1| - 3.3e-10 39.3 12.7 3.5e-05 23.4 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330507413|ref|YP_004383841.1| - 3.4e-08 33.2 6.7 0.0013 18.5 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330507413|ref|YP_004383841.1| - 6.9e-08 32.2 15.7 0.00085 19.4 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330507413|ref|YP_004383841.1| - 2.8e-07 30.4 22.4 5.7e-05 23.0 9.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330507413|ref|YP_004383841.1| - 3.8e-07 30.7 8.0 0.0023 18.6 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|330507413|ref|YP_004383841.1| - 1.8e-06 28.2 13.9 0.002 18.5 2.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain NIL PF09383.5 gi|330507413|ref|YP_004383841.1| - 4.6e-05 22.8 0.1 5.9e-05 22.5 0.1 1.1 1 0 0 1 1 1 1 NIL domain Fer4_3 PF12798.2 gi|330507413|ref|YP_004383841.1| - 6.1e-05 23.3 21.6 0.0085 16.5 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330507413|ref|YP_004383841.1| - 7.3e-05 23.0 11.9 0.0046 17.3 0.8 2.7 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|330507413|ref|YP_004383841.1| - 8.5e-05 22.8 12.0 0.041 14.2 1.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330507413|ref|YP_004383841.1| - 0.0017 18.9 15.6 0.0063 17.0 1.7 2.9 2 1 1 3 3 3 2 4Fe-4S single cluster domain tify PF06200.9 gi|330507413|ref|YP_004383841.1| - 0.012 14.8 0.2 0.018 14.2 0.1 1.3 1 0 0 1 1 1 0 tify domain Trp_syntA PF00290.15 gi|330507413|ref|YP_004383841.1| - 0.024 13.1 0.1 0.03 12.8 0.1 1.1 1 0 0 1 1 1 0 Tryptophan synthase alpha chain GMC_oxred_N PF00732.14 gi|330507413|ref|YP_004383841.1| - 0.029 13.5 0.4 2.4 7.2 0.0 2.0 1 1 1 2 2 2 0 GMC oxidoreductase Fer4_11 PF13247.1 gi|330507413|ref|YP_004383841.1| - 0.039 13.8 4.7 0.14 12.0 3.3 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain GCC2_GCC3 PF07699.8 gi|330507413|ref|YP_004383841.1| - 0.095 12.2 3.2 0.65 9.6 2.2 2.0 1 1 0 1 1 1 0 GCC2 and GCC3 HCV_NS2 PF01538.13 gi|330507413|ref|YP_004383841.1| - 0.32 10.4 7.6 2 7.7 0.8 2.2 1 1 1 2 2 2 0 Hepatitis C virus non-structural protein NS2 c-SKI_SMAD_bind PF08782.5 gi|330507413|ref|YP_004383841.1| - 0.94 9.6 7.1 2.5 8.2 0.3 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain DUF39 PF01837.11 gi|330507414|ref|YP_004383842.1| - 3e-137 456.8 0.0 3.6e-137 456.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|330507414|ref|YP_004383842.1| - 1.7e-29 101.3 3.4 9.4e-16 57.3 0.1 2.6 2 0 0 2 2 2 2 CBS domain RelB_N PF12910.2 gi|330507414|ref|YP_004383842.1| - 0.024 14.0 0.0 0.075 12.3 0.0 1.9 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin stability system N-terminal tify PF06200.9 gi|330507414|ref|YP_004383842.1| - 0.078 12.2 0.2 0.16 11.2 0.1 1.4 1 0 0 1 1 1 0 tify domain Radical_SAM PF04055.16 gi|330507415|ref|YP_004383843.1| - 1.3e-08 35.2 0.1 7.1e-08 32.8 0.1 2.4 1 1 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|330507415|ref|YP_004383843.1| - 0.061 13.1 0.1 0.17 11.7 0.1 1.9 1 1 0 1 1 1 0 B12 binding domain DUF2551 PF10826.3 gi|330507416|ref|YP_004383844.1| - 2.4e-31 107.4 0.3 2.8e-31 107.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.14 gi|330507416|ref|YP_004383844.1| - 0.038 13.9 0.0 0.051 13.5 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family CbiX PF01903.12 gi|330507416|ref|YP_004383844.1| - 0.12 12.4 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 CbiX Radical_SAM PF04055.16 gi|330507417|ref|YP_004383845.1| - 3.7e-09 36.9 0.5 2.9e-08 34.0 0.0 2.4 2 1 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|330507417|ref|YP_004383845.1| - 1.1e-07 31.8 0.0 2e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330507417|ref|YP_004383845.1| - 1.2e-07 31.9 0.0 2e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TPP_enzyme_C PF02775.16 gi|330507418|ref|YP_004383846.1| - 1.4e-22 79.9 0.6 2.2e-22 79.2 0.4 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|330507418|ref|YP_004383846.1| - 9.9e-12 44.8 0.1 1.3e-10 41.1 0.1 2.1 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|330507418|ref|YP_004383846.1| - 2.6e-07 29.9 10.4 9.7e-06 24.9 1.7 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330507418|ref|YP_004383846.1| - 6.7e-05 22.6 12.1 0.0054 16.5 1.7 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330507418|ref|YP_004383846.1| - 0.00019 21.1 13.3 0.023 14.6 2.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330507418|ref|YP_004383846.1| - 0.00037 20.6 12.8 0.00096 19.3 8.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330507418|ref|YP_004383846.1| - 0.00062 19.5 9.8 0.0019 17.9 6.8 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330507418|ref|YP_004383846.1| - 0.00092 18.9 16.3 0.0012 18.6 1.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330507418|ref|YP_004383846.1| - 0.0011 19.3 12.4 0.0049 17.2 8.4 2.4 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330507418|ref|YP_004383846.1| - 0.0026 17.9 13.1 0.09 13.1 2.2 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330507418|ref|YP_004383846.1| - 0.029 15.1 2.4 0.029 15.1 1.7 2.7 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|330507418|ref|YP_004383846.1| - 0.12 12.4 11.0 0.53 10.3 7.7 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330507418|ref|YP_004383846.1| - 1.3 9.4 12.8 0.63 10.4 1.9 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330507418|ref|YP_004383846.1| - 2.3 8.8 14.0 1.4 9.5 2.2 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain POR PF01558.13 gi|330507419|ref|YP_004383847.1| - 5.5e-36 124.0 0.0 6.5e-36 123.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase SicP-binding PF09119.5 gi|330507419|ref|YP_004383847.1| - 0.087 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 SicP binding HEAT_2 PF13646.1 gi|330507420|ref|YP_004383848.1| - 2.3e-19 69.4 6.2 8.3e-10 38.8 0.6 2.2 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.17 gi|330507420|ref|YP_004383848.1| - 2.6e-08 33.2 0.1 0.12 12.5 0.0 4.3 4 0 0 4 4 4 3 HEAT repeat HEAT_PBS PF03130.11 gi|330507420|ref|YP_004383848.1| - 3.8e-07 29.9 2.3 0.0039 17.5 0.4 3.9 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|330507420|ref|YP_004383848.1| - 5e-07 30.0 2.1 0.033 14.6 0.1 3.9 2 1 2 4 4 4 2 HEAT-like repeat Cnd1 PF12717.2 gi|330507420|ref|YP_004383848.1| - 2.4e-05 24.2 0.2 0.5 10.1 0.0 3.0 2 1 0 2 2 2 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|330507420|ref|YP_004383848.1| - 0.01 14.1 1.9 0.073 11.3 0.7 2.1 1 1 1 2 2 2 0 Adaptin N terminal region Haem_bd PF14376.1 gi|330507420|ref|YP_004383848.1| - 0.094 12.4 0.8 0.13 11.9 0.1 1.6 2 0 0 2 2 2 0 Haem-binding domain Arm PF00514.18 gi|330507420|ref|YP_004383848.1| - 0.11 12.3 0.0 3.1 7.7 0.0 2.7 2 1 0 2 2 2 0 Armadillo/beta-catenin-like repeat Dodecin PF07311.7 gi|330507421|ref|YP_004383849.1| - 7.7e-22 77.1 0.1 8.7e-22 76.9 0.1 1.0 1 0 0 1 1 1 1 Dodecin Phage_Gp111 PF07410.6 gi|330507421|ref|YP_004383849.1| - 0.056 13.5 0.0 0.066 13.3 0.0 1.2 1 0 0 1 1 1 0 Streptococcus thermophilus bacteriophage Gp111 protein DUF1102 PF06510.6 gi|330507421|ref|YP_004383849.1| - 0.077 12.8 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1102) Glycos_transf_2 PF00535.21 gi|330507422|ref|YP_004383850.1| - 9.9e-23 80.6 0.0 1.5e-22 80.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330507422|ref|YP_004383850.1| - 2.5e-11 43.8 0.0 4.5e-11 42.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|330507422|ref|YP_004383850.1| - 3.8e-05 22.9 0.0 5.5e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|330507422|ref|YP_004383850.1| - 7e-05 22.9 0.0 0.00032 20.8 0.0 1.8 1 1 1 2 2 2 1 MobA-like NTP transferase domain UPF0233 PF06781.7 gi|330507422|ref|YP_004383850.1| - 0.29 10.7 6.7 7.9 6.1 0.1 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) PIRT PF15099.1 gi|330507422|ref|YP_004383850.1| - 0.59 9.3 3.4 1.7 7.8 0.0 2.5 3 0 0 3 3 3 0 Phosphoinositide-interacting protein family DUF373 PF04123.8 gi|330507422|ref|YP_004383850.1| - 3.8 6.4 14.5 9.3 5.1 10.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF373) Glycos_transf_1 PF00534.15 gi|330507423|ref|YP_004383851.1| - 1.8e-32 112.1 0.0 4.4e-32 110.8 0.0 1.6 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330507423|ref|YP_004383851.1| - 3.3e-18 66.1 0.1 2.3e-17 63.4 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|330507423|ref|YP_004383851.1| - 3.9e-16 59.6 0.1 1.2e-15 58.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|330507423|ref|YP_004383851.1| - 1.5e-11 44.3 0.0 2.9e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|330507423|ref|YP_004383851.1| - 0.012 15.8 0.0 0.041 14.1 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 HATPase_c_4 PF13749.1 gi|330507424|ref|YP_004383852.1| - 1.1e-23 82.7 0.0 1.1e-22 79.6 0.0 2.5 3 0 0 3 3 3 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|330507424|ref|YP_004383852.1| - 8.4e-08 32.3 0.0 1.4e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 Divergent AAA domain DUF4334 PF14232.1 gi|330507427|ref|YP_004383855.1| - 0.052 13.2 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4334) E1-E2_ATPase PF00122.15 gi|330507428|ref|YP_004383856.1| - 2.8e-54 183.5 0.5 6.4e-54 182.4 0.3 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|330507428|ref|YP_004383856.1| - 8.1e-48 163.6 0.4 5.2e-47 161.0 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|330507428|ref|YP_004383856.1| - 6e-18 65.7 0.0 1.7e-17 64.2 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|330507428|ref|YP_004383856.1| - 1.1e-06 28.4 0.1 0.0016 18.0 0.2 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Pentapeptide_3 PF13576.1 gi|330507429|ref|YP_004383857.1| - 4.8e-32 109.5 59.3 2.6e-09 36.8 2.6 6.1 3 2 2 6 6 6 5 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|330507429|ref|YP_004383857.1| - 0.0001 22.0 24.9 1.8e+03 -1.3 17.3 4.8 1 1 0 1 1 1 0 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|330507429|ref|YP_004383857.1| - 0.0031 17.1 3.4 0.0072 16.0 0.4 2.7 2 1 0 2 2 2 1 Ion channel DUF4131 PF13567.1 gi|330507429|ref|YP_004383857.1| - 0.73 9.2 5.1 5.6 6.3 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF1795 PF08786.6 gi|330507430|ref|YP_004383858.1| - 9.2e-07 28.7 0.0 1.3e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1795) PsbP PF01789.11 gi|330507430|ref|YP_004383858.1| - 0.0045 16.4 0.1 1.1 8.6 0.0 2.2 2 0 0 2 2 2 2 PsbP NosD PF05048.8 gi|330507431|ref|YP_004383859.1| - 3e-22 78.9 5.6 3.6e-22 78.6 3.9 1.1 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|330507431|ref|YP_004383859.1| - 2.6e-07 30.5 14.5 3.8e-07 30.0 9.8 1.4 1 1 0 1 1 1 1 Right handed beta helix region DUF1565 PF07602.6 gi|330507431|ref|YP_004383859.1| - 0.029 13.4 1.6 0.037 13.1 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1565) Transposase_20 PF02371.11 gi|330507432|ref|YP_004383860.1| - 1.3e-25 89.3 0.1 2.3e-25 88.5 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|330507432|ref|YP_004383860.1| - 1.1e-23 83.4 0.0 1.9e-23 82.7 0.0 1.4 1 0 0 1 1 1 1 Transposase Lectin_N PF03954.9 gi|330507432|ref|YP_004383860.1| - 0.032 13.6 0.0 0.38 10.1 0.0 2.2 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain TPR_11 PF13414.1 gi|330507433|ref|YP_004383861.1| - 1.1e-59 197.9 24.0 1.3e-12 47.2 0.0 4.4 1 1 5 6 6 6 6 TPR repeat TPR_1 PF00515.23 gi|330507433|ref|YP_004383861.1| - 7.4e-53 174.1 4.6 2.4e-09 36.4 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330507433|ref|YP_004383861.1| - 2.4e-42 139.4 13.9 3.3e-07 29.6 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330507433|ref|YP_004383861.1| - 1.5e-34 115.3 4.0 3.2e-07 30.0 0.0 7.6 7 1 0 7 7 7 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330507433|ref|YP_004383861.1| - 2e-31 105.3 0.9 3.1e-05 23.4 0.0 7.1 5 2 2 7 7 7 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330507433|ref|YP_004383861.1| - 1.1e-26 92.8 19.2 5.3e-09 36.5 1.1 4.3 2 1 1 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330507433|ref|YP_004383861.1| - 8e-26 89.8 11.8 3.7e-08 33.1 0.0 4.8 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330507433|ref|YP_004383861.1| - 2.3e-23 80.5 14.6 0.00048 20.5 0.0 6.9 2 1 5 7 7 7 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330507433|ref|YP_004383861.1| - 1.7e-17 61.7 7.4 0.031 14.0 0.0 7.1 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330507433|ref|YP_004383861.1| - 6.3e-17 61.1 6.8 1.1e-06 28.4 0.1 4.6 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330507433|ref|YP_004383861.1| - 3.9e-15 55.9 6.5 1.7e-06 28.2 0.3 4.5 2 1 2 5 5 5 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330507433|ref|YP_004383861.1| - 2.2e-11 43.4 3.2 0.65 10.5 0.0 6.8 7 0 0 7 7 7 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330507433|ref|YP_004383861.1| - 3.3e-09 36.7 3.5 1.6 8.5 0.0 5.6 3 2 2 5 5 5 3 Domain of Unknown Function (DUF3856) TPR_10 PF13374.1 gi|330507433|ref|YP_004383861.1| - 3.3e-08 33.2 19.3 0.51 10.3 0.4 7.1 7 0 0 7 7 7 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|330507433|ref|YP_004383861.1| - 1.1e-07 31.8 0.8 0.015 15.3 0.0 3.9 2 1 2 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.9 gi|330507433|ref|YP_004383861.1| - 1.8e-07 30.9 22.9 0.074 13.5 0.2 6.9 7 0 0 7 7 7 2 Tetratricopeptide repeat BTAD PF03704.12 gi|330507433|ref|YP_004383861.1| - 2e-07 31.4 10.3 0.00059 20.1 0.3 3.6 3 1 0 3 3 3 2 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|330507433|ref|YP_004383861.1| - 9.2e-07 28.9 0.3 0.11 12.5 0.0 3.0 2 1 1 3 3 3 2 Tetratrico peptide repeat MIT PF04212.13 gi|330507433|ref|YP_004383861.1| - 1.6e-05 24.6 3.9 0.23 11.3 0.1 4.5 4 1 0 5 5 5 2 MIT (microtubule interacting and transport) domain TPR_15 PF13429.1 gi|330507433|ref|YP_004383861.1| - 0.00016 20.8 3.9 0.0042 16.1 0.2 3.6 1 1 2 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|330507433|ref|YP_004383861.1| - 0.00024 19.9 0.1 0.0099 14.6 0.0 2.2 2 1 0 2 2 2 1 NMDA receptor-regulated protein 1 FAT PF02259.18 gi|330507433|ref|YP_004383861.1| - 0.00098 18.1 0.5 0.78 8.6 0.1 2.8 1 1 2 3 3 3 2 FAT domain PPTA PF01239.17 gi|330507433|ref|YP_004383861.1| - 0.0023 17.2 0.9 6.6 6.2 0.0 4.0 4 0 0 4 4 3 0 Protein prenyltransferase alpha subunit repeat TPR_20 PF14561.1 gi|330507433|ref|YP_004383861.1| - 0.0083 16.2 2.6 1.9 8.6 0.0 3.8 3 2 1 4 4 4 1 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|330507433|ref|YP_004383861.1| - 0.013 15.1 2.3 1.8 8.1 0.1 3.5 1 1 2 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 Coatomer_E PF04733.9 gi|330507433|ref|YP_004383861.1| - 0.017 14.3 0.1 3.2 6.8 0.0 2.4 2 0 0 2 2 2 0 Coatomer epsilon subunit Apc5 PF12862.2 gi|330507433|ref|YP_004383861.1| - 3.1 7.7 7.2 25 4.7 0.0 4.0 4 1 0 4 4 2 0 Anaphase-promoting complex subunit 5 NTPase_1 PF03266.10 gi|330507434|ref|YP_004383862.1| - 2.1e-44 151.1 0.0 2.4e-44 151.0 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF258 PF03193.11 gi|330507434|ref|YP_004383862.1| - 6.7e-06 25.3 0.2 1.1e-05 24.6 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ArgK PF03308.11 gi|330507434|ref|YP_004383862.1| - 2.2e-05 23.3 0.7 0.00028 19.7 0.1 2.1 2 0 0 2 2 2 1 ArgK protein DUF2478 PF10649.4 gi|330507434|ref|YP_004383862.1| - 2.3e-05 23.7 0.0 2.9e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_17 PF13207.1 gi|330507434|ref|YP_004383862.1| - 6.9e-05 23.6 0.7 0.00013 22.8 0.5 1.7 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|330507434|ref|YP_004383862.1| - 0.0008 19.3 0.1 0.0012 18.7 0.1 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|330507434|ref|YP_004383862.1| - 0.0028 18.1 0.1 0.0046 17.4 0.1 1.4 1 0 0 1 1 1 1 Miro-like protein AAA_22 PF13401.1 gi|330507434|ref|YP_004383862.1| - 0.0084 16.2 2.7 0.045 13.8 0.8 2.6 1 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|330507434|ref|YP_004383862.1| - 0.009 15.9 0.2 0.015 15.2 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|330507434|ref|YP_004383862.1| - 0.01 16.1 0.1 0.021 15.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|330507434|ref|YP_004383862.1| - 0.014 15.4 1.0 0.026 14.5 0.6 1.7 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.22 gi|330507434|ref|YP_004383862.1| - 0.016 15.5 0.0 0.03 14.6 0.0 1.3 1 1 0 1 1 1 0 ABC transporter NACHT PF05729.7 gi|330507434|ref|YP_004383862.1| - 0.023 14.3 0.6 0.085 12.5 0.2 1.9 2 0 0 2 2 2 0 NACHT domain cobW PF02492.14 gi|330507434|ref|YP_004383862.1| - 0.026 13.9 0.4 0.12 11.8 0.1 2.0 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|330507434|ref|YP_004383862.1| - 0.054 12.7 0.0 0.093 12.0 0.0 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_29 PF13555.1 gi|330507434|ref|YP_004383862.1| - 0.054 13.0 0.2 0.097 12.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|330507434|ref|YP_004383862.1| - 0.076 13.2 0.5 0.17 12.0 0.3 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|330507434|ref|YP_004383862.1| - 0.082 12.6 0.2 0.082 12.6 0.1 2.1 3 0 0 3 3 3 0 Part of AAA domain AAA_10 PF12846.2 gi|330507434|ref|YP_004383862.1| - 0.14 11.5 0.1 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain DAP3 PF10236.4 gi|330507434|ref|YP_004383862.1| - 0.15 11.0 0.2 0.21 10.4 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 MobB PF03205.9 gi|330507434|ref|YP_004383862.1| - 0.16 11.6 0.4 0.27 10.9 0.3 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|330507434|ref|YP_004383862.1| - 0.37 10.1 2.9 0.82 9.0 0.3 2.4 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|330507434|ref|YP_004383862.1| - 0.42 10.1 1.8 1.5 8.3 1.1 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Toprim_4 PF13662.1 gi|330507435|ref|YP_004383863.1| - 2.7e-06 27.2 0.0 5.1e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|330507435|ref|YP_004383863.1| - 2.6e-05 24.1 0.0 4.8e-05 23.2 0.0 1.7 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|330507435|ref|YP_004383863.1| - 0.0029 17.8 0.0 0.0041 17.4 0.0 1.3 1 0 0 1 1 1 1 Toprim-like Toprim_3 PF13362.1 gi|330507435|ref|YP_004383863.1| - 0.079 13.2 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Toprim domain DUF167 PF02594.11 gi|330507436|ref|YP_004383864.1| - 4.4e-16 58.5 0.0 5.5e-16 58.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 AICARFT_IMPCHas PF01808.13 gi|330507437|ref|YP_004383865.1| - 9.2e-77 258.2 0.0 1.2e-76 257.8 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme NosD PF05048.8 gi|330507438|ref|YP_004383866.1| - 1.2e-42 145.7 31.2 5.3e-22 78.1 11.1 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|330507438|ref|YP_004383866.1| - 3e-24 85.5 32.6 1.4e-18 67.1 0.5 2.6 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|330507438|ref|YP_004383866.1| - 4.4e-06 26.0 11.7 3e-05 23.3 2.4 3.0 1 1 2 3 3 3 2 Protein of unknown function (DUF1565) Imm48 PF15587.1 gi|330507438|ref|YP_004383866.1| - 0.0049 16.2 1.1 0.02 14.3 0.0 2.1 2 0 0 2 2 2 1 Immunity protein 48 TRM PF02005.11 gi|330507439|ref|YP_004383867.1| - 1e-97 327.4 0.0 1.3e-97 327.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|330507439|ref|YP_004383867.1| - 0.00025 21.0 0.1 0.00043 20.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330507439|ref|YP_004383867.1| - 0.00044 19.6 0.1 0.0027 17.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase small domain Met_10 PF02475.11 gi|330507439|ref|YP_004383867.1| - 0.004 16.7 0.0 0.0055 16.3 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|330507439|ref|YP_004383867.1| - 0.027 13.5 0.1 0.04 13.0 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|330507439|ref|YP_004383867.1| - 0.034 13.5 0.1 0.34 10.2 0.0 2.0 1 1 1 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_16 PF10294.4 gi|330507439|ref|YP_004383867.1| - 0.05 13.0 0.0 0.081 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_31 PF13847.1 gi|330507439|ref|YP_004383867.1| - 0.068 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain F420_oxidored PF03807.12 gi|330507440|ref|YP_004383868.1| - 9.8e-19 67.5 0.1 2.6e-18 66.2 0.0 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|330507440|ref|YP_004383868.1| - 0.00067 19.7 0.1 0.0013 18.8 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding PDH PF02153.12 gi|330507440|ref|YP_004383868.1| - 0.0047 15.8 0.0 0.0073 15.2 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase Semialdhyde_dh PF01118.19 gi|330507440|ref|YP_004383868.1| - 0.0059 16.8 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|330507440|ref|YP_004383868.1| - 0.059 13.2 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|330507440|ref|YP_004383868.1| - 0.078 12.6 0.2 0.16 11.6 0.1 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TraB PF01963.12 gi|330507441|ref|YP_004383869.1| - 4.8e-52 176.9 0.7 6.5e-52 176.5 0.5 1.1 1 0 0 1 1 1 1 TraB family DUF2207 PF09972.4 gi|330507441|ref|YP_004383869.1| - 0.012 14.2 0.8 0.021 13.3 0.5 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CBS PF00571.23 gi|330507442|ref|YP_004383870.1| - 8e-29 99.1 4.6 7.9e-14 51.1 0.2 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|330507442|ref|YP_004383870.1| - 9.8e-17 60.5 19.9 2.1e-11 43.1 6.6 3.1 1 1 2 3 3 3 2 Peptidase family M50 p53-inducible11 PF14936.1 gi|330507442|ref|YP_004383870.1| - 0.056 13.3 0.2 0.23 11.3 0.0 2.2 2 0 0 2 2 2 0 Tumour protein p53-inducible protein 11 GAF_2 PF13185.1 gi|330507442|ref|YP_004383870.1| - 0.13 12.7 0.0 2.3 8.6 0.0 2.5 2 0 0 2 2 2 0 GAF domain Aldolase_II PF00596.16 gi|330507443|ref|YP_004383871.1| - 3e-32 111.7 0.3 3.3e-32 111.5 0.2 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Peptidase_S8 PF00082.17 gi|330507444|ref|YP_004383872.1| - 1.8e-54 184.7 0.1 3.6e-54 183.8 0.0 1.5 2 0 0 2 2 2 1 Subtilase family Big_3_4 PF13754.1 gi|330507444|ref|YP_004383872.1| - 0.00087 19.5 4.4 0.0069 16.6 0.0 3.2 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) Inhibitor_I9 PF05922.11 gi|330507444|ref|YP_004383872.1| - 0.0066 16.9 0.0 0.012 16.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase inhibitor I9 Rhodanese PF00581.15 gi|330507445|ref|YP_004383873.1| - 3.1e-26 91.9 0.0 4.4e-12 46.3 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain NosD PF05048.8 gi|330507446|ref|YP_004383874.1| - 1.3e-47 161.9 40.6 3.4e-28 98.4 15.5 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|330507446|ref|YP_004383874.1| - 1.5e-34 119.0 72.6 1.8e-16 60.2 14.7 3.0 1 1 2 3 3 3 3 Right handed beta helix region DUF1565 PF07602.6 gi|330507446|ref|YP_004383874.1| - 2.8e-08 33.2 27.7 0.0028 16.8 4.8 4.2 1 1 2 3 3 3 3 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.2 gi|330507446|ref|YP_004383874.1| - 0.0046 17.1 25.3 1.6 8.7 9.0 2.7 1 1 1 2 2 2 2 Pectate lyase superfamily protein Phage_holin_1 PF04531.8 gi|330507447|ref|YP_004383875.1| - 0.056 13.5 0.0 0.091 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage holin DsbD PF02683.10 gi|330507448|ref|YP_004383876.1| - 3.5e-11 43.1 15.6 4.7e-11 42.6 10.8 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|330507448|ref|YP_004383876.1| - 1.4e-06 28.2 25.4 1.7e-05 24.6 16.5 2.1 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Glutaredoxin PF00462.19 gi|330507448|ref|YP_004383876.1| - 0.0025 17.7 0.0 0.0061 16.5 0.0 1.7 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.1 gi|330507448|ref|YP_004383876.1| - 0.0082 15.9 0.1 0.013 15.2 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin domain OrfB_IS605 PF01385.14 gi|330507449|ref|YP_004383877.1| - 1.1e-33 116.5 0.4 1.4e-33 116.1 0.3 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330507449|ref|YP_004383877.1| - 3.9e-24 84.0 1.6 1.1e-23 82.6 0.4 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330507449|ref|YP_004383877.1| - 1.5e-06 27.4 0.5 3.1e-06 26.4 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|330507449|ref|YP_004383877.1| - 0.018 14.2 1.8 0.041 13.0 1.3 1.6 1 1 0 1 1 1 0 zinc-ribbon domain RecR PF02132.10 gi|330507449|ref|YP_004383877.1| - 0.16 11.4 6.2 2.9 7.3 0.1 3.1 2 1 1 3 3 3 0 RecR protein TF_Zn_Ribbon PF08271.7 gi|330507449|ref|YP_004383877.1| - 0.22 10.8 3.3 0.48 9.7 0.0 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding Fae PF08714.6 gi|330507450|ref|YP_004383878.1| - 2.6e-71 238.5 0.1 4.3e-71 237.7 0.0 1.4 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|330507450|ref|YP_004383878.1| - 2.2e-22 79.6 0.4 3.7e-22 78.8 0.3 1.4 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|330507450|ref|YP_004383878.1| - 3.9e-05 22.8 0.2 0.00014 21.0 0.1 1.9 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|330507450|ref|YP_004383878.1| - 6.6e-05 22.2 0.8 0.0061 15.8 0.0 2.2 2 0 0 2 2 2 2 PcrB family ATP-sulfurylase PF01747.12 gi|330507450|ref|YP_004383878.1| - 0.0016 17.8 0.0 0.0029 16.9 0.0 1.4 1 0 0 1 1 1 1 ATP-sulfurylase NanE PF04131.9 gi|330507450|ref|YP_004383878.1| - 0.0061 15.5 0.2 0.035 13.0 0.0 2.1 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|330507450|ref|YP_004383878.1| - 0.0089 14.9 0.6 0.014 14.3 0.5 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase DDE_Tnp_1 PF01609.16 gi|330507451|ref|YP_004383879.1| - 5.3e-14 52.2 0.0 8.4e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain TBD PF12845.2 gi|330507451|ref|YP_004383879.1| - 0.064 12.8 0.1 11 5.6 0.1 2.7 2 0 0 2 2 2 0 TBD domain Herpes_U44 PF04533.8 gi|330507451|ref|YP_004383879.1| - 0.094 11.9 0.4 0.2 10.9 0.3 1.4 1 0 0 1 1 1 0 Herpes virus U44 protein DUF772 PF05598.6 gi|330507452|ref|YP_004383880.1| - 4.3e-20 71.3 0.0 8.1e-20 70.5 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|330507452|ref|YP_004383880.1| - 2.7e-11 43.4 6.5 4.8e-10 39.3 4.5 2.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|330507452|ref|YP_004383880.1| - 1.5e-05 24.9 0.5 2.6e-05 24.2 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330507452|ref|YP_004383880.1| - 2.2e-05 24.1 0.2 6.3e-05 22.6 0.1 1.8 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_2 PF13586.1 gi|330507452|ref|YP_004383880.1| - 0.015 15.4 2.0 0.02 15.0 0.1 2.0 2 0 0 2 2 2 0 Transposase DDE domain DUF217 PF02697.9 gi|330507453|ref|YP_004383881.1| - 0.00025 21.2 0.6 0.00028 21.0 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 MatP PF06303.7 gi|330507453|ref|YP_004383881.1| - 0.099 12.5 0.1 0.11 12.4 0.1 1.1 1 0 0 1 1 1 0 Organiser of macrodomain of Terminus of chromosome Metalloenzyme PF01676.13 gi|330507454|ref|YP_004383882.1| - 1.7e-13 50.5 0.0 6e-13 48.7 0.0 1.7 2 0 0 2 2 2 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|330507454|ref|YP_004383882.1| - 2.9e-09 36.5 0.0 8.8e-09 34.9 0.0 1.7 2 0 0 2 2 2 1 Sulfatase Phosphodiest PF01663.17 gi|330507454|ref|YP_004383882.1| - 2.7e-08 33.5 0.0 1.5e-07 31.0 0.0 2.0 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.15 gi|330507454|ref|YP_004383882.1| - 4.1e-05 22.4 0.0 8.2e-05 21.4 0.0 1.4 1 0 0 1 1 1 1 Alkaline phosphatase DUF3795 PF12675.2 gi|330507455|ref|YP_004383883.1| - 5.9e-11 42.3 5.2 1.1e-10 41.5 3.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) ZZ PF00569.12 gi|330507455|ref|YP_004383883.1| - 4.6 6.8 10.1 3 7.4 4.0 2.8 2 1 0 2 2 2 0 Zinc finger, ZZ type DUF169 PF02596.10 gi|330507456|ref|YP_004383884.1| - 7.2e-60 202.0 0.0 8.1e-60 201.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 tRNA-Thr_ED PF08915.6 gi|330507458|ref|YP_004383886.1| - 2.6e-52 176.4 0.0 4.9e-52 175.5 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|330507458|ref|YP_004383886.1| - 2.6e-20 72.7 1.6 4.3e-20 71.9 1.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|330507458|ref|YP_004383886.1| - 1.7e-16 59.9 0.1 3.8e-16 58.8 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain Glycoamylase PF10091.4 gi|330507458|ref|YP_004383886.1| - 0.024 13.7 0.0 0.04 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative glucoamylase DDE_Tnp_1 PF01609.16 gi|330507459|ref|YP_004383887.1| - 9.5e-23 80.8 0.0 1.4e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|330507459|ref|YP_004383887.1| - 0.0076 16.4 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|330507459|ref|YP_004383887.1| - 0.011 14.7 0.3 0.017 14.1 0.2 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 NosD PF05048.8 gi|330507460|ref|YP_004383888.1| - 3e-44 150.9 79.0 9.5e-26 90.3 24.6 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|330507460|ref|YP_004383888.1| - 1.7e-41 141.6 98.7 9e-22 77.5 25.8 3.2 1 1 2 3 3 3 3 Right handed beta helix region Acylphosphatase PF00708.13 gi|330507461|ref|YP_004383889.1| - 2.9e-12 46.5 0.0 4.7e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Acylphosphatase Type_III_YscX PF09474.5 gi|330507461|ref|YP_004383889.1| - 0.11 12.5 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Type III secretion system YscX (type_III_YscX) Radical_SAM_N PF08497.5 gi|330507462|ref|YP_004383890.1| - 1.2e-128 428.3 0.0 1.5e-128 427.9 0.0 1.1 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.3 gi|330507462|ref|YP_004383890.1| - 7.7e-20 71.3 0.0 1.5e-19 70.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.16 gi|330507462|ref|YP_004383890.1| - 1.7e-15 57.6 0.2 6.9e-15 55.6 0.1 2.1 3 0 0 3 3 3 1 Radical SAM superfamily Hpr_kinase_C PF07475.7 gi|330507463|ref|YP_004383891.1| - 7.2e-06 25.4 0.1 4.2e-05 22.9 0.1 2.1 1 1 0 1 1 1 1 HPr Serine kinase C-terminal domain PEPCK_ATP PF01293.15 gi|330507463|ref|YP_004383891.1| - 1.2e-05 24.0 0.0 1.7e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_33 PF13671.1 gi|330507463|ref|YP_004383891.1| - 0.0047 16.8 0.0 0.0096 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|330507463|ref|YP_004383891.1| - 0.036 13.5 0.0 0.087 12.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|330507463|ref|YP_004383891.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain His_Phos_1 PF00300.17 gi|330507464|ref|YP_004383892.1| - 1.1e-42 145.7 0.0 1.4e-42 145.5 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Rotamase PF00639.16 gi|330507465|ref|YP_004383893.1| - 2e-27 95.7 0.0 2.4e-27 95.5 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_3 PF13616.1 gi|330507465|ref|YP_004383893.1| - 2.4e-26 92.3 0.0 2.6e-26 92.1 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.1 gi|330507465|ref|YP_004383893.1| - 7.9e-10 39.4 0.0 8.6e-10 39.3 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Cyclase PF04199.8 gi|330507466|ref|YP_004383894.1| - 2.2e-22 79.5 0.0 2.8e-22 79.2 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PAS_9 PF13426.1 gi|330507467|ref|YP_004383895.1| - 3.7e-52 175.0 0.8 7.1e-15 55.2 0.0 4.6 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|330507467|ref|YP_004383895.1| - 1.7e-45 153.4 0.3 3.6e-15 55.7 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|330507467|ref|YP_004383895.1| - 3.3e-38 130.1 0.0 2.7e-13 49.9 0.0 4.4 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|330507467|ref|YP_004383895.1| - 5.4e-29 100.1 0.0 1e-28 99.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|330507467|ref|YP_004383895.1| - 1.9e-28 98.7 0.7 4.2e-28 97.5 0.5 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.1 gi|330507467|ref|YP_004383895.1| - 8.1e-27 92.1 0.1 3.2e-05 23.6 0.0 5.0 5 0 0 5 5 4 4 PAS domain HisKA PF00512.20 gi|330507467|ref|YP_004383895.1| - 1.5e-20 72.9 0.2 1.1e-19 70.1 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|330507467|ref|YP_004383895.1| - 1.4e-14 53.9 0.5 0.0004 20.4 0.0 4.1 3 1 0 3 3 3 3 PAS fold PAS_10 PF13596.1 gi|330507467|ref|YP_004383895.1| - 5.5e-07 29.8 0.0 0.0016 18.7 0.0 3.8 4 0 0 4 4 4 1 PAS domain PAS_7 PF12860.2 gi|330507467|ref|YP_004383895.1| - 2.1e-05 24.5 0.2 0.12 12.3 0.0 4.9 5 2 0 5 5 5 1 PAS fold GAF_2 PF13185.1 gi|330507467|ref|YP_004383895.1| - 0.00069 20.1 0.0 0.002 18.6 0.0 1.9 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|330507467|ref|YP_004383895.1| - 0.00095 19.3 0.0 0.0032 17.6 0.0 1.9 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|330507467|ref|YP_004383895.1| - 0.0085 16.1 0.0 0.043 13.9 0.0 2.3 2 0 0 2 2 2 1 GAF domain HATPase_c_3 PF13589.1 gi|330507467|ref|YP_004383895.1| - 0.033 13.8 0.0 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Docking PF08990.6 gi|330507467|ref|YP_004383895.1| - 0.26 10.5 6.3 0.066 12.4 0.9 2.4 2 0 0 2 2 2 0 Erythronolide synthase docking Rep_fac_C PF08542.6 gi|330507468|ref|YP_004383896.1| - 8.3e-21 73.7 0.0 1.9e-20 72.5 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|330507468|ref|YP_004383896.1| - 6.8e-16 58.3 0.0 8.5e-14 51.5 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|330507468|ref|YP_004383896.1| - 1.6e-15 57.4 0.0 3.5e-15 56.3 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|330507468|ref|YP_004383896.1| - 2.5e-10 39.6 0.0 3.8e-05 22.5 0.0 2.2 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|330507468|ref|YP_004383896.1| - 2.2e-09 36.7 0.0 9.3e-09 34.6 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|330507468|ref|YP_004383896.1| - 5.1e-06 26.4 0.0 9.9e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330507468|ref|YP_004383896.1| - 1.4e-05 25.1 0.5 0.00072 19.5 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|330507468|ref|YP_004383896.1| - 4.4e-05 23.6 0.1 0.23 11.6 0.0 2.6 1 1 1 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|330507468|ref|YP_004383896.1| - 0.0002 20.6 0.0 0.073 12.2 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|330507468|ref|YP_004383896.1| - 0.00053 19.5 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.8 gi|330507468|ref|YP_004383896.1| - 0.0015 18.0 0.0 0.012 15.1 0.0 2.0 2 0 0 2 2 2 1 DNA polymerase III, delta subunit TIP49 PF06068.8 gi|330507468|ref|YP_004383896.1| - 0.0026 16.5 0.0 0.022 13.4 0.0 2.1 1 1 1 2 2 2 1 TIP49 C-terminus SNF2_N PF00176.18 gi|330507468|ref|YP_004383896.1| - 0.0047 15.7 0.0 0.16 10.6 0.0 2.1 1 1 1 2 2 2 1 SNF2 family N-terminal domain IstB_IS21 PF01695.12 gi|330507468|ref|YP_004383896.1| - 0.0069 15.8 0.0 0.036 13.5 0.0 2.1 3 0 0 3 3 2 1 IstB-like ATP binding protein AAA_10 PF12846.2 gi|330507468|ref|YP_004383896.1| - 0.0076 15.7 0.7 1.1 8.6 0.0 2.3 1 1 0 2 2 2 1 AAA-like domain Sigma54_activat PF00158.21 gi|330507468|ref|YP_004383896.1| - 0.0097 15.3 0.0 4.7 6.6 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain ResIII PF04851.10 gi|330507468|ref|YP_004383896.1| - 0.017 14.9 0.0 0.05 13.4 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_17 PF13207.1 gi|330507468|ref|YP_004383896.1| - 0.023 15.5 0.1 0.12 13.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|330507468|ref|YP_004383896.1| - 0.026 14.5 0.0 0.059 13.4 0.0 1.5 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|330507468|ref|YP_004383896.1| - 0.03 13.9 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|330507468|ref|YP_004383896.1| - 0.031 14.5 0.0 0.075 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|330507468|ref|YP_004383896.1| - 0.052 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_5 PF07728.9 gi|330507468|ref|YP_004383896.1| - 0.12 12.1 0.1 1.2 8.8 0.1 2.5 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|330507468|ref|YP_004383896.1| - 0.12 12.5 0.0 0.3 11.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase tRNA-synt_1 PF00133.17 gi|330507469|ref|YP_004383897.1| - 7.1e-201 668.3 0.1 8.5e-201 668.0 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|330507469|ref|YP_004383897.1| - 1.7e-35 122.0 0.1 4.6e-35 120.6 0.0 1.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|330507469|ref|YP_004383897.1| - 8.1e-28 97.1 1.9 8e-13 47.7 0.2 3.6 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|330507469|ref|YP_004383897.1| - 1.4e-05 24.3 0.0 0.00012 21.3 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|330507469|ref|YP_004383897.1| - 0.00013 20.7 0.0 0.00069 18.3 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) DNase-RNase PF02577.9 gi|330507470|ref|YP_004383898.1| - 2.5e-39 133.5 0.2 3e-39 133.3 0.1 1.0 1 0 0 1 1 1 1 Bifunctional nuclease OrfB_Zn_ribbon PF07282.6 gi|330507471|ref|YP_004383899.1| - 2.5e-23 81.5 0.0 7.4e-23 80.0 0.0 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330507471|ref|YP_004383899.1| - 9.6e-12 44.7 2.2 1.4e-11 44.2 1.5 1.2 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|330507471|ref|YP_004383899.1| - 0.037 13.7 0.0 0.091 12.4 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|330507471|ref|YP_004383899.1| - 0.039 13.7 0.8 0.095 12.5 0.5 1.7 1 0 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.6 gi|330507471|ref|YP_004383899.1| - 0.12 12.5 5.8 1.7 8.8 4.3 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF1610) DUF1646 PF07854.7 gi|330507472|ref|YP_004383900.1| - 2.1e-125 418.4 28.7 2.5e-125 418.2 19.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) DUF1646 PF07854.7 gi|330507473|ref|YP_004383901.1| - 2.1e-36 125.8 16.6 2.6e-36 125.4 11.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Brevenin PF03032.10 gi|330507473|ref|YP_004383901.1| - 1.4 8.7 0.0 1.4 8.7 0.0 2.7 3 0 0 3 3 3 0 Brevenin/esculentin/gaegurin/rugosin family DUF2306 PF10067.4 gi|330507473|ref|YP_004383901.1| - 4.6 7.4 10.9 0.25 11.4 0.1 3.1 2 1 1 3 3 3 0 Predicted membrane protein (DUF2306) DUF1646 PF07854.7 gi|330507474|ref|YP_004383902.1| - 8.3e-120 400.0 31.6 9.5e-120 399.8 21.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Frizzled PF01534.12 gi|330507474|ref|YP_004383902.1| - 0.021 13.5 2.5 0.041 12.6 0.1 2.3 2 0 0 2 2 2 0 Frizzled/Smoothened family membrane region Thr_synth_N PF14821.1 gi|330507474|ref|YP_004383902.1| - 0.058 13.4 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Threonine synthase N terminus HrcA_DNA-bdg PF03444.10 gi|330507475|ref|YP_004383903.1| - 6e-27 92.8 0.0 1.3e-26 91.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|330507475|ref|YP_004383903.1| - 2.1e-15 56.1 0.3 6.8e-11 41.7 0.0 3.0 3 0 0 3 3 3 2 CBS domain DUF1646 PF07854.7 gi|330507475|ref|YP_004383903.1| - 3.4e-10 39.5 2.7 5.8e-10 38.8 1.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Rrf2 PF02082.15 gi|330507475|ref|YP_004383903.1| - 2e-07 31.0 0.1 7.4e-07 29.2 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|330507475|ref|YP_004383903.1| - 0.039 13.5 0.1 0.086 12.5 0.0 1.6 1 0 0 1 1 1 0 HTH domain MarR_2 PF12802.2 gi|330507475|ref|YP_004383903.1| - 0.078 12.6 0.1 0.27 10.9 0.1 2.0 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|330507475|ref|YP_004383903.1| - 0.17 11.7 2.2 0.36 10.6 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Holin_BlyA PF05102.7 gi|330507475|ref|YP_004383903.1| - 0.58 9.9 0.0 0.58 9.9 0.0 2.3 2 0 0 2 2 2 0 holin, BlyA family DUF1646 PF07854.7 gi|330507476|ref|YP_004383904.1| - 8.3e-125 416.5 28.3 1e-124 416.2 19.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) OrfB_Zn_ribbon PF07282.6 gi|330507477|ref|YP_004383905.1| - 7.3e-20 70.4 1.2 4.4e-19 67.9 0.1 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330507477|ref|YP_004383905.1| - 3.5e-12 46.2 0.0 4.8e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Probable transposase DUF1646 PF07854.7 gi|330507478|ref|YP_004383906.1| - 9e-35 120.4 20.4 1.1e-34 120.0 14.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Brevenin PF03032.10 gi|330507478|ref|YP_004383906.1| - 0.014 15.2 0.1 0.034 13.9 0.1 1.7 1 0 0 1 1 1 0 Brevenin/esculentin/gaegurin/rugosin family Usp PF00582.21 gi|330507480|ref|YP_004383908.1| - 2.6e-40 137.8 0.2 3.5e-19 69.3 0.0 2.1 2 0 0 2 2 2 2 Universal stress protein family Tropomyosin PF00261.15 gi|330507480|ref|YP_004383908.1| - 0.2 10.7 3.5 0.17 10.9 0.6 1.9 2 0 0 2 2 2 0 Tropomyosin DUF1646 PF07854.7 gi|330507481|ref|YP_004383909.1| - 1.4e-122 409.1 33.0 1.7e-122 408.8 22.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) DUF2645 PF10840.3 gi|330507481|ref|YP_004383909.1| - 0.83 9.8 0.1 0.83 9.8 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2645) Usp PF00582.21 gi|330507482|ref|YP_004383910.1| - 6.5e-39 133.3 5.1 9.5e-20 71.2 0.2 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF2316 PF10078.4 gi|330507482|ref|YP_004383910.1| - 0.031 14.2 0.1 0.065 13.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) OmpA PF00691.15 gi|330507482|ref|YP_004383910.1| - 0.093 13.1 0.0 0.22 11.9 0.0 1.7 1 0 0 1 1 1 0 OmpA family ATP-synt_F PF01990.12 gi|330507482|ref|YP_004383910.1| - 0.12 12.7 1.0 0.63 10.4 0.1 2.5 2 1 0 2 2 2 0 ATP synthase (F/14-kDa) subunit Flagellin_IN PF07196.8 gi|330507482|ref|YP_004383910.1| - 0.13 12.2 1.3 0.32 10.9 0.3 2.0 2 0 0 2 2 2 0 Flagellin hook IN motif Radical_SAM PF04055.16 gi|330507483|ref|YP_004383911.1| - 0.00022 21.4 0.0 0.00039 20.6 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily MtrA PF04208.9 gi|330507483|ref|YP_004383911.1| - 0.059 12.8 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit A Pyr_redox_2 PF07992.9 gi|330507484|ref|YP_004383912.1| - 4.8e-27 95.1 0.1 8e-27 94.4 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|330507484|ref|YP_004383912.1| - 3.6e-13 50.0 0.9 1.1e-08 35.4 0.0 2.9 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|330507484|ref|YP_004383912.1| - 2.1e-08 33.4 2.6 5.5e-07 28.7 0.1 2.3 2 1 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|330507484|ref|YP_004383912.1| - 8.2e-06 24.9 2.7 0.0026 16.7 1.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|330507484|ref|YP_004383912.1| - 9.9e-06 24.8 0.4 9.9e-06 24.8 0.3 1.9 3 0 0 3 3 3 1 Thi4 family HI0933_like PF03486.9 gi|330507484|ref|YP_004383912.1| - 1.2e-05 24.0 4.2 0.00015 20.4 0.6 2.8 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.2 gi|330507484|ref|YP_004383912.1| - 2.8e-05 23.3 1.2 4.5e-05 22.7 0.8 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|330507484|ref|YP_004383912.1| - 0.00038 20.8 2.9 0.19 12.1 0.1 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|330507484|ref|YP_004383912.1| - 0.00063 18.8 0.8 0.0011 18.1 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|330507484|ref|YP_004383912.1| - 0.00065 19.9 0.1 0.028 14.6 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|330507484|ref|YP_004383912.1| - 0.00067 19.6 0.4 0.00067 19.6 0.3 2.5 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|330507484|ref|YP_004383912.1| - 0.00091 18.1 13.1 0.00096 18.1 1.4 2.9 3 1 0 3 3 3 2 Glucose inhibited division protein A ELFV_dehydrog PF00208.16 gi|330507484|ref|YP_004383912.1| - 0.013 15.1 1.3 0.024 14.2 0.0 1.9 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K_oxygenase PF13434.1 gi|330507484|ref|YP_004383912.1| - 0.024 13.5 0.1 5.2 5.8 0.0 2.4 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.9 gi|330507484|ref|YP_004383912.1| - 0.045 12.3 0.6 0.1 11.2 0.4 1.5 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|330507484|ref|YP_004383912.1| - 0.096 11.5 0.3 0.21 10.4 0.2 1.6 1 0 0 1 1 1 0 Lycopene cyclase protein LTD PF00932.14 gi|330507485|ref|YP_004383913.1| - 9.9e-08 32.0 0.2 5.7e-07 29.6 0.0 2.4 2 0 0 2 2 2 1 Lamin Tail Domain DUF11 PF01345.13 gi|330507485|ref|YP_004383913.1| - 6.3e-06 26.1 0.6 0.00037 20.4 0.1 3.2 3 0 0 3 3 3 1 Domain of unknown function DUF11 CARDB PF07705.6 gi|330507485|ref|YP_004383913.1| - 0.023 14.7 0.8 12 6.0 0.0 3.7 4 0 0 4 4 4 0 CARDB HTH_45 PF14947.1 gi|330507486|ref|YP_004383914.1| - 3.6e-22 77.9 0.3 4.3e-22 77.7 0.2 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|330507486|ref|YP_004383914.1| - 0.019 15.0 0.0 0.095 12.7 0.0 1.9 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|330507486|ref|YP_004383914.1| - 0.025 14.8 0.1 0.31 11.3 0.0 2.5 2 1 0 2 2 2 0 Winged helix DNA-binding domain MarR PF01047.17 gi|330507487|ref|YP_004383915.1| - 0.00023 20.7 0.0 0.00062 19.4 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|330507487|ref|YP_004383915.1| - 0.00028 21.1 0.1 0.0014 18.9 0.0 2.1 3 0 0 3 3 3 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|330507487|ref|YP_004383915.1| - 0.0049 16.7 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|330507487|ref|YP_004383915.1| - 0.005 16.9 0.0 0.046 13.8 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator HTH_20 PF12840.2 gi|330507487|ref|YP_004383915.1| - 0.013 15.2 0.7 0.071 12.9 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|330507487|ref|YP_004383915.1| - 0.015 14.9 0.0 0.041 13.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|330507487|ref|YP_004383915.1| - 0.024 14.3 0.1 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|330507487|ref|YP_004383915.1| - 0.026 13.9 0.9 3 7.3 0.0 3.3 4 0 0 4 4 4 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|330507487|ref|YP_004383915.1| - 0.034 13.9 0.1 0.16 11.7 0.0 2.0 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain PadR PF03551.9 gi|330507487|ref|YP_004383915.1| - 0.048 13.4 0.0 0.21 11.3 0.0 2.1 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|330507487|ref|YP_004383915.1| - 0.061 13.1 0.0 0.097 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Tricho_coat PF05892.6 gi|330507488|ref|YP_004383916.1| - 0.033 13.4 0.1 0.063 12.4 0.0 1.4 1 0 0 1 1 1 0 Trichovirus coat protein DUF1396 PF07161.8 gi|330507488|ref|YP_004383916.1| - 0.059 13.0 2.4 2.4 7.7 0.7 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1396) MAGUK_N_PEST PF10608.4 gi|330507488|ref|YP_004383916.1| - 0.1 13.0 0.7 0.89 9.9 0.1 2.4 2 0 0 2 2 2 0 Polyubiquitination (PEST) N-terminal domain of MAGUK SAICAR_synt PF01259.13 gi|330507489|ref|YP_004383917.1| - 3.9e-32 111.3 0.0 6.3e-31 107.3 0.0 2.0 1 1 0 1 1 1 1 SAICAR synthetase RNA_pol_Rpb4 PF03874.11 gi|330507489|ref|YP_004383917.1| - 0.038 14.0 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb4 Cpn60_TCP1 PF00118.19 gi|330507490|ref|YP_004383918.1| - 5e-170 566.2 13.2 5.6e-170 566.1 9.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Creatininase PF02633.9 gi|330507491|ref|YP_004383919.1| - 2.7e-62 209.9 0.3 3.1e-62 209.7 0.2 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Smr PF01713.16 gi|330507491|ref|YP_004383919.1| - 0.064 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Smr domain STT3 PF02516.9 gi|330507492|ref|YP_004383920.1| - 6.7e-28 97.8 41.7 3.3e-27 95.6 28.9 2.2 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|330507492|ref|YP_004383920.1| - 2.4e-06 27.5 14.2 2.4e-06 27.5 9.8 4.5 3 2 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PTPS PF01242.14 gi|330507494|ref|YP_004383922.1| - 1.1e-34 118.7 0.0 1.2e-34 118.6 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF3287 PF11690.3 gi|330507495|ref|YP_004383923.1| - 0.1 12.6 0.1 0.11 12.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3287) RHH_1 PF01402.16 gi|330507495|ref|YP_004383923.1| - 0.2 11.6 0.8 6 6.9 0.0 2.2 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family TP_methylase PF00590.15 gi|330507496|ref|YP_004383924.1| - 2.8e-14 53.3 0.0 3.8e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MCR_C PF04609.7 gi|330507497|ref|YP_004383925.1| - 2.8e-39 134.5 1.8 5e-37 127.1 0.3 2.4 1 1 1 2 2 2 2 Methyl-coenzyme M reductase operon protein C PhosphMutase PF10143.4 gi|330507498|ref|YP_004383926.1| - 3.4e-54 183.0 0.0 6e-54 182.2 0.0 1.4 2 0 0 2 2 2 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|330507498|ref|YP_004383926.1| - 2.7e-45 154.7 0.0 3.2e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily CitF PF04223.7 gi|330507498|ref|YP_004383926.1| - 0.078 11.6 0.0 0.12 10.9 0.0 1.2 1 0 0 1 1 1 0 Citrate lyase, alpha subunit (CitF) ADP_ribosyl_GH PF03747.9 gi|330507499|ref|YP_004383927.1| - 2.4e-58 198.2 0.9 2.7e-58 198.0 0.6 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase DUF531 PF04407.7 gi|330507499|ref|YP_004383927.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF531) Semialdhyde_dh PF01118.19 gi|330507500|ref|YP_004383928.1| - 3.5e-32 111.2 0.0 6.3e-32 110.4 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|330507500|ref|YP_004383928.1| - 3e-22 79.3 0.0 4.1e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.12 gi|330507500|ref|YP_004383928.1| - 0.00015 22.1 0.0 0.00039 20.7 0.0 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|330507500|ref|YP_004383928.1| - 0.0028 18.1 0.0 0.0045 17.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|330507500|ref|YP_004383928.1| - 0.11 12.5 0.0 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 NADH(P)-binding CBS PF00571.23 gi|330507501|ref|YP_004383929.1| - 2e-36 123.4 3.5 2.9e-19 68.5 0.2 2.2 2 0 0 2 2 2 2 CBS domain ArgJ PF01960.13 gi|330507502|ref|YP_004383930.1| - 2.9e-133 444.0 1.7 3.5e-133 443.7 1.2 1.0 1 0 0 1 1 1 1 ArgJ family Lyase_1 PF00206.15 gi|330507503|ref|YP_004383931.1| - 6.7e-59 199.6 0.1 9.4e-59 199.1 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|330507503|ref|YP_004383931.1| - 7.2e-13 48.4 0.0 7.4e-12 45.1 0.0 2.8 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Herpes_UL21 PF03252.8 gi|330507503|ref|YP_004383931.1| - 0.078 11.4 0.0 0.098 11.1 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus UL21 Epimerase PF01370.16 gi|330507504|ref|YP_004383932.1| - 7.9e-41 140.0 0.0 9.5e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|330507504|ref|YP_004383932.1| - 1.6e-07 30.3 0.0 5e-05 22.1 0.0 2.2 2 0 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|330507504|ref|YP_004383932.1| - 7.8e-06 24.9 0.1 0.0019 17.1 0.0 2.2 1 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|330507504|ref|YP_004383932.1| - 1.6e-05 24.9 0.0 2.8e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|330507504|ref|YP_004383932.1| - 3.2e-05 22.9 0.1 0.00015 20.7 0.0 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.20 gi|330507504|ref|YP_004383932.1| - 0.00039 20.3 0.4 0.00074 19.4 0.0 1.6 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|330507504|ref|YP_004383932.1| - 0.021 14.5 0.1 0.04 13.5 0.1 1.4 1 0 0 1 1 1 0 KR domain Methyltransf_23 PF13489.1 gi|330507505|ref|YP_004383933.1| - 4e-22 78.6 0.0 5.8e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330507505|ref|YP_004383933.1| - 6e-20 71.3 0.0 8.1e-20 70.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507505|ref|YP_004383933.1| - 1.1e-19 70.7 0.0 1.8e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|330507505|ref|YP_004383933.1| - 3.1e-14 52.8 0.0 4.3e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.2 gi|330507505|ref|YP_004383933.1| - 1e-12 48.6 0.0 1.6e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507505|ref|YP_004383933.1| - 1.1e-12 48.2 0.0 2e-12 47.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507505|ref|YP_004383933.1| - 4.9e-10 39.6 0.0 1e-09 38.6 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330507505|ref|YP_004383933.1| - 1.8e-09 37.6 0.0 4.4e-09 36.3 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|330507505|ref|YP_004383933.1| - 1.9e-09 36.4 0.0 2.4e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Ubie_methyltran PF01209.13 gi|330507505|ref|YP_004383933.1| - 2e-08 33.6 0.0 2.5e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|330507505|ref|YP_004383933.1| - 4.3e-06 26.5 0.0 8.9e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.9 gi|330507505|ref|YP_004383933.1| - 1.1e-05 24.8 0.1 1.7e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|330507505|ref|YP_004383933.1| - 1.5e-05 24.2 0.0 2.1e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|330507505|ref|YP_004383933.1| - 2.8e-05 23.2 0.0 0.00091 18.3 0.0 2.2 1 1 1 2 2 2 1 Putative methyltransferase DREV PF05219.7 gi|330507505|ref|YP_004383933.1| - 3.5e-05 22.8 0.0 5.3e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|330507505|ref|YP_004383933.1| - 6.6e-05 22.4 0.0 9.8e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|330507505|ref|YP_004383933.1| - 0.0001 21.5 0.0 0.00015 20.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB DOT1 PF08123.8 gi|330507505|ref|YP_004383933.1| - 0.0017 17.7 0.0 0.0029 16.9 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_9 PF08003.6 gi|330507505|ref|YP_004383933.1| - 0.0039 15.9 0.0 0.0073 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.8 gi|330507505|ref|YP_004383933.1| - 0.02 14.0 0.0 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_2 PF00891.13 gi|330507505|ref|YP_004383933.1| - 0.027 13.6 0.0 0.037 13.2 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase CheR PF01739.13 gi|330507505|ref|YP_004383933.1| - 0.036 13.3 0.0 1.9 7.7 0.0 2.1 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain FtsJ PF01728.14 gi|330507505|ref|YP_004383933.1| - 0.072 13.0 0.0 0.097 12.6 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase NNMT_PNMT_TEMT PF01234.12 gi|330507505|ref|YP_004383933.1| - 0.1 11.5 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family Glycos_transf_1 PF00534.15 gi|330507506|ref|YP_004383934.1| - 8.8e-37 126.1 0.0 1.4e-36 125.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330507506|ref|YP_004383934.1| - 7.6e-21 74.6 0.0 1.6e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|330507506|ref|YP_004383934.1| - 2.1e-12 47.4 0.0 4e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|330507506|ref|YP_004383934.1| - 2.5e-11 43.6 0.0 7.3e-11 42.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|330507506|ref|YP_004383934.1| - 1.5e-08 34.8 0.0 2.6e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|330507506|ref|YP_004383934.1| - 7.2e-08 32.3 0.0 1.5e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.21 gi|330507507|ref|YP_004383935.1| - 4.7e-32 110.9 0.0 1.8e-31 109.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330507507|ref|YP_004383935.1| - 1.4e-23 83.9 0.0 2e-23 83.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|330507507|ref|YP_004383935.1| - 1.2e-09 38.1 0.0 2.1e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|330507507|ref|YP_004383935.1| - 5.8e-06 25.5 0.0 1.1e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|330507507|ref|YP_004383935.1| - 1.2e-05 24.6 0.0 3.2e-05 23.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|330507507|ref|YP_004383935.1| - 0.064 13.5 0.0 0.16 12.2 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family 2 Rhamno_transf PF11316.3 gi|330507507|ref|YP_004383935.1| - 0.17 11.0 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 Putative rhamnosyl transferase ABC2_membrane PF01061.19 gi|330507508|ref|YP_004383936.1| - 1.6e-27 96.0 25.8 1.6e-27 96.0 17.9 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330507508|ref|YP_004383936.1| - 1.7 7.5 37.2 2.4 7.0 4.3 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|330507509|ref|YP_004383937.1| - 7.1e-23 81.4 0.0 4.5e-22 78.8 0.0 2.0 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330507509|ref|YP_004383937.1| - 2.5e-10 40.8 0.1 1.2e-07 32.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|330507509|ref|YP_004383937.1| - 7e-06 26.5 0.0 1.1e-05 25.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|330507509|ref|YP_004383937.1| - 1.1e-05 24.8 0.0 2.5e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|330507509|ref|YP_004383937.1| - 0.00051 20.2 0.2 0.0064 16.6 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|330507509|ref|YP_004383937.1| - 0.0016 17.9 0.4 0.41 10.0 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain NTPase_1 PF03266.10 gi|330507509|ref|YP_004383937.1| - 0.0025 17.5 0.3 1.2 8.7 0.0 2.2 2 0 0 2 2 2 2 NTPase AAA_14 PF13173.1 gi|330507509|ref|YP_004383937.1| - 0.0028 17.5 0.3 0.21 11.5 0.0 2.5 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|330507509|ref|YP_004383937.1| - 0.0033 16.7 0.1 0.051 12.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|330507509|ref|YP_004383937.1| - 0.0081 16.9 0.1 0.017 15.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|330507509|ref|YP_004383937.1| - 0.01 15.0 0.0 0.027 13.6 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|330507509|ref|YP_004383937.1| - 0.012 14.3 0.2 0.03 13.0 0.0 1.6 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|330507509|ref|YP_004383937.1| - 0.017 15.1 0.0 0.02 14.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|330507509|ref|YP_004383937.1| - 0.03 14.8 0.0 0.12 12.9 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein ATP-synt_ab PF00006.20 gi|330507509|ref|YP_004383937.1| - 0.053 13.0 0.0 0.082 12.3 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|330507509|ref|YP_004383937.1| - 0.059 13.0 0.2 0.59 9.8 0.0 2.5 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|330507509|ref|YP_004383937.1| - 0.064 12.9 0.2 0.13 11.9 0.2 1.7 1 1 0 1 1 1 0 Archaeal ATPase RNA_helicase PF00910.17 gi|330507509|ref|YP_004383937.1| - 0.087 13.0 0.0 0.48 10.6 0.0 2.1 2 0 0 2 2 2 0 RNA helicase IPPT PF01715.12 gi|330507509|ref|YP_004383937.1| - 0.087 11.8 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 IPP transferase AAA_18 PF13238.1 gi|330507509|ref|YP_004383937.1| - 0.096 12.9 0.0 0.7 10.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|330507509|ref|YP_004383937.1| - 0.11 12.1 0.1 0.62 9.7 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|330507509|ref|YP_004383937.1| - 0.12 11.9 0.1 0.27 10.8 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_15 PF13175.1 gi|330507509|ref|YP_004383937.1| - 0.16 10.9 0.0 2.5 7.0 0.0 1.9 1 1 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|330507509|ref|YP_004383937.1| - 0.29 10.9 1.6 1.8 8.3 0.0 2.4 3 0 0 3 3 2 0 Part of AAA domain LTD PF00932.14 gi|330507511|ref|YP_004383939.1| - 2.9e-23 82.1 2.6 3.8e-23 81.7 1.8 1.1 1 0 0 1 1 1 1 Lamin Tail Domain DEDD_Tnp_IS110 PF01548.12 gi|330507512|ref|YP_004383940.1| - 3.2e-25 88.4 0.1 8.7e-25 87.0 0.0 1.8 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.11 gi|330507512|ref|YP_004383940.1| - 1.1e-24 86.3 0.0 2.4e-24 85.2 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family YfkB PF08756.5 gi|330507512|ref|YP_004383940.1| - 0.028 13.9 0.0 0.08 12.5 0.0 1.8 1 0 0 1 1 1 0 YfkB-like domain POR PF01558.13 gi|330507514|ref|YP_004383942.1| - 1.9e-39 135.3 0.2 2.3e-39 135.0 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF3572 PF12096.3 gi|330507514|ref|YP_004383942.1| - 0.16 11.8 0.6 0.83 9.5 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3572) Fer4 PF00037.22 gi|330507515|ref|YP_004383943.1| - 7.4e-11 41.1 17.3 1.1e-05 24.7 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330507515|ref|YP_004383943.1| - 2.4e-09 36.9 29.2 3.5e-07 29.9 10.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330507515|ref|YP_004383943.1| - 4.4e-07 29.5 24.9 9.8e-06 25.2 10.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330507515|ref|YP_004383943.1| - 7.2e-07 29.4 27.0 3.6e-06 27.2 10.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330507515|ref|YP_004383943.1| - 1.3e-06 27.9 13.3 0.0011 18.7 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330507515|ref|YP_004383943.1| - 3.8e-06 26.5 19.6 0.00083 19.1 5.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330507515|ref|YP_004383943.1| - 1.5e-05 25.6 13.2 0.01 16.5 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|330507515|ref|YP_004383943.1| - 0.00019 21.3 10.1 0.038 14.0 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330507515|ref|YP_004383943.1| - 0.00035 20.7 16.6 0.0021 18.2 11.4 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330507515|ref|YP_004383943.1| - 0.0017 18.6 12.3 0.069 13.5 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330507515|ref|YP_004383943.1| - 0.0024 18.0 17.2 0.065 13.5 1.5 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330507515|ref|YP_004383943.1| - 0.0054 17.2 14.3 0.2 12.2 0.8 2.8 2 1 1 3 3 3 2 4Fe-4S single cluster domain LIM PF00412.17 gi|330507515|ref|YP_004383943.1| - 0.011 15.7 4.4 0.011 15.7 3.1 1.9 1 1 1 2 2 2 0 LIM domain Fer4_13 PF13370.1 gi|330507515|ref|YP_004383943.1| - 0.022 15.1 13.2 0.12 12.7 2.5 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|330507515|ref|YP_004383943.1| - 0.45 10.9 16.4 1.7 9.1 3.1 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330507515|ref|YP_004383943.1| - 3 8.6 20.8 5.7 7.7 5.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain C1_1 PF00130.17 gi|330507515|ref|YP_004383943.1| - 9.4 6.0 13.0 2.8 7.7 3.0 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) POR_N PF01855.14 gi|330507516|ref|YP_004383944.1| - 8.5e-67 225.0 0.0 1.1e-66 224.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|330507516|ref|YP_004383944.1| - 1.6e-08 34.5 0.1 3.6e-08 33.3 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|330507517|ref|YP_004383945.1| - 5e-27 94.3 0.0 7.3e-27 93.8 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IMP_cyclohyd PF07826.6 gi|330507518|ref|YP_004383946.1| - 3.5e-62 209.3 0.0 4.1e-62 209.0 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein FTR_C PF02741.10 gi|330507519|ref|YP_004383947.1| - 2.8e-63 212.1 1.2 2.8e-63 212.1 0.8 1.5 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.13 gi|330507519|ref|YP_004383947.1| - 9.7e-61 203.7 0.0 2.2e-60 202.5 0.0 1.6 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase UPF0444 PF15475.1 gi|330507519|ref|YP_004383947.1| - 0.28 11.2 2.1 3.1 7.9 0.7 2.3 1 1 1 2 2 2 0 Transmembrane protein C12orf23, UPF0444 DUF2299 PF10061.4 gi|330507520|ref|YP_004383948.1| - 5.8e-23 80.8 0.0 6.6e-23 80.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) SIMPL PF04402.9 gi|330507521|ref|YP_004383949.1| - 7.1e-45 153.4 6.7 8.1e-45 153.2 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) SIMPL PF04402.9 gi|330507522|ref|YP_004383950.1| - 2.2e-26 93.0 4.3 2.8e-26 92.7 3.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF3783 PF12646.2 gi|330507522|ref|YP_004383950.1| - 0.12 12.1 0.0 2 8.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) DeoC PF01791.4 gi|330507523|ref|YP_004383951.1| - 2.4e-52 177.5 0.0 2.9e-52 177.3 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase TPR_11 PF13414.1 gi|330507524|ref|YP_004383952.1| - 6e-48 160.3 20.3 7.5e-13 47.9 0.0 4.1 1 1 3 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|330507524|ref|YP_004383952.1| - 1.2e-41 138.6 13.2 7.4e-11 41.1 0.0 6.7 6 1 0 6 6 6 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330507524|ref|YP_004383952.1| - 9.5e-34 112.5 14.3 1.5e-08 33.9 0.0 6.3 6 1 0 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330507524|ref|YP_004383952.1| - 4.8e-26 88.5 10.1 7.5e-07 28.4 0.4 5.6 6 0 0 6 6 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330507524|ref|YP_004383952.1| - 9.2e-25 86.7 19.0 5.1e-07 30.1 2.9 3.8 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330507524|ref|YP_004383952.1| - 2e-21 74.3 13.7 1.6e-05 24.6 0.0 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330507524|ref|YP_004383952.1| - 6e-20 70.9 11.0 6.4e-08 32.4 0.0 3.7 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330507524|ref|YP_004383952.1| - 1.7e-18 65.4 14.1 0.00013 22.2 0.0 5.4 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330507524|ref|YP_004383952.1| - 2.1e-17 62.7 9.7 1.7e-07 30.9 0.1 3.5 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330507524|ref|YP_004383952.1| - 1.1e-12 48.1 14.8 3.2e-05 24.1 0.1 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330507524|ref|YP_004383952.1| - 3.2e-09 36.6 2.7 0.18 12.3 0.1 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|330507524|ref|YP_004383952.1| - 9e-09 35.3 4.2 0.0024 17.9 0.0 3.1 3 0 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|330507524|ref|YP_004383952.1| - 8.2e-07 28.3 8.5 0.058 13.2 0.0 4.6 3 2 1 4 4 4 3 Tetratricopeptide repeat FAT PF02259.18 gi|330507524|ref|YP_004383952.1| - 7.6e-06 25.1 2.6 0.0011 18.0 1.4 2.3 1 1 1 2 2 2 1 FAT domain PPTA PF01239.17 gi|330507524|ref|YP_004383952.1| - 1.1e-05 24.4 0.7 2.4 7.6 0.0 5.0 5 0 0 5 5 5 1 Protein prenyltransferase alpha subunit repeat NARP1 PF12569.3 gi|330507524|ref|YP_004383952.1| - 0.0001 21.2 5.4 0.049 12.3 0.0 2.9 1 1 1 3 3 3 2 NMDA receptor-regulated protein 1 TPR_10 PF13374.1 gi|330507524|ref|YP_004383952.1| - 0.00012 21.8 10.3 2 8.4 0.0 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|330507524|ref|YP_004383952.1| - 0.0013 18.8 8.9 0.39 10.8 0.2 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat MIT PF04212.13 gi|330507524|ref|YP_004383952.1| - 0.0014 18.4 3.1 0.57 10.1 0.4 3.9 2 1 0 3 3 3 1 MIT (microtubule interacting and transport) domain DUF3856 PF12968.2 gi|330507524|ref|YP_004383952.1| - 0.0035 17.1 2.1 11 5.7 0.0 4.0 1 1 0 2 2 2 0 Domain of Unknown Function (DUF3856) BTAD PF03704.12 gi|330507524|ref|YP_004383952.1| - 0.0065 16.7 3.9 3.3 8.0 0.0 2.8 1 1 2 3 3 3 1 Bacterial transcriptional activator domain TOM20_plant PF06552.7 gi|330507524|ref|YP_004383952.1| - 0.012 15.2 0.3 0.15 11.6 0.0 2.5 1 1 1 2 2 2 0 Plant specific mitochondrial import receptor subunit TOM20 Fis1_TPR_C PF14853.1 gi|330507524|ref|YP_004383952.1| - 0.41 10.5 9.8 7.8 6.4 0.1 5.1 4 2 2 6 6 6 0 Fis1 C-terminal tetratricopeptide repeat RDD PF06271.7 gi|330507525|ref|YP_004383953.1| - 9.6e-26 90.3 3.9 1.1e-25 90.1 2.7 1.0 1 0 0 1 1 1 1 RDD family Glycophorin_A PF01102.13 gi|330507525|ref|YP_004383953.1| - 0.065 13.0 1.7 4.5 7.0 0.0 2.2 2 0 0 2 2 2 0 Glycophorin A Glycos_transf_1 PF00534.15 gi|330507526|ref|YP_004383954.1| - 2.3e-29 102.0 0.0 4.3e-29 101.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|330507526|ref|YP_004383954.1| - 2.4e-22 79.7 0.0 4e-22 79.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|330507526|ref|YP_004383954.1| - 7.8e-17 61.5 0.9 4.1e-08 33.0 0.0 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|330507526|ref|YP_004383954.1| - 7.1e-15 55.1 0.1 1.9e-14 53.7 0.1 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|330507526|ref|YP_004383954.1| - 2.9e-14 53.3 0.0 8.8e-14 51.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|330507526|ref|YP_004383954.1| - 3.5e-08 33.3 0.0 6.6e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|330507526|ref|YP_004383954.1| - 1.2e-06 28.6 0.0 2.7e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 NAD_binding_10 PF13460.1 gi|330507526|ref|YP_004383954.1| - 0.0027 17.7 0.0 0.0043 17.0 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding GalP_UDP_transf PF01087.17 gi|330507527|ref|YP_004383955.1| - 3.5e-14 53.2 0.0 1.1e-12 48.3 0.0 2.2 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|330507527|ref|YP_004383955.1| - 2.2e-07 30.5 0.0 4.4e-07 29.5 0.0 1.5 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.3 gi|330507527|ref|YP_004383955.1| - 6.4e-07 29.6 0.0 9.4e-05 22.6 0.0 2.3 2 0 0 2 2 2 2 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.18 gi|330507527|ref|YP_004383955.1| - 0.00041 20.8 0.0 0.025 15.1 0.0 2.2 2 0 0 2 2 2 1 HIT domain Glycos_transf_1 PF00534.15 gi|330507528|ref|YP_004383956.1| - 3.1e-32 111.3 0.0 7.3e-32 110.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|330507528|ref|YP_004383956.1| - 4.4e-23 82.1 0.0 7.5e-23 81.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|330507528|ref|YP_004383956.1| - 2.4e-13 50.2 0.0 2.9e-09 36.9 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|330507528|ref|YP_004383956.1| - 1.1e-11 44.6 0.0 5.1e-11 42.5 0.0 2.1 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|330507528|ref|YP_004383956.1| - 2.5e-11 43.8 0.2 4.2e-11 43.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|330507528|ref|YP_004383956.1| - 1e-07 32.1 0.0 1.9e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|330507528|ref|YP_004383956.1| - 0.0023 17.7 0.0 0.0046 16.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycogen_syn PF05693.8 gi|330507528|ref|YP_004383956.1| - 0.13 10.4 0.0 0.2 9.8 0.0 1.1 1 0 0 1 1 1 0 Glycogen synthase Glycogen_syn PF05693.8 gi|330507529|ref|YP_004383957.1| - 2e-18 66.0 0.0 6.3e-08 31.3 0.0 3.0 2 1 0 2 2 2 2 Glycogen synthase Glycos_transf_1 PF00534.15 gi|330507529|ref|YP_004383957.1| - 6.9e-05 22.3 0.0 0.0017 17.8 0.0 2.9 3 0 0 3 3 3 1 Glycosyl transferases group 1 KaiC PF06745.8 gi|330507530|ref|YP_004383958.1| - 2.8e-45 154.1 0.2 3.4e-45 153.9 0.1 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|330507530|ref|YP_004383958.1| - 2.5e-06 26.0 0.0 3.6e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|330507530|ref|YP_004383958.1| - 6.6e-06 25.6 0.0 9.7e-06 25.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain MEDS PF14417.1 gi|330507530|ref|YP_004383958.1| - 0.027 13.5 0.0 0.037 13.0 0.0 1.2 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Sigma54_activat PF00158.21 gi|330507530|ref|YP_004383958.1| - 0.029 13.8 0.1 0.049 13.0 0.1 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.1 gi|330507530|ref|YP_004383958.1| - 0.032 14.3 0.1 0.16 12.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|330507530|ref|YP_004383958.1| - 0.038 13.4 0.2 0.084 12.3 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain DUF2075 PF09848.4 gi|330507530|ref|YP_004383958.1| - 0.039 12.9 0.1 0.052 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|330507530|ref|YP_004383958.1| - 0.05 12.8 0.4 0.88 8.7 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_19 PF13245.1 gi|330507530|ref|YP_004383958.1| - 0.055 13.2 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|330507530|ref|YP_004383958.1| - 0.066 13.1 0.1 0.19 11.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|330507530|ref|YP_004383958.1| - 0.12 11.8 0.1 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA PF00004.24 gi|330507531|ref|YP_004383959.1| - 1.1e-13 51.5 0.0 3.2e-13 50.0 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|330507531|ref|YP_004383959.1| - 5.8e-10 38.4 0.0 0.00019 20.2 0.0 2.3 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|330507531|ref|YP_004383959.1| - 1.6e-07 31.4 0.0 0.00031 20.9 0.0 2.9 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|330507531|ref|YP_004383959.1| - 0.00011 22.2 1.4 0.027 14.4 0.0 3.7 3 1 1 4 4 4 1 AAA ATPase domain AAA_17 PF13207.1 gi|330507531|ref|YP_004383959.1| - 0.00014 22.7 0.0 0.0007 20.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|330507531|ref|YP_004383959.1| - 0.00074 19.4 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|330507531|ref|YP_004383959.1| - 0.0015 17.8 0.6 0.19 10.9 0.3 2.3 1 1 1 2 2 2 1 PhoH-like protein RuvB_N PF05496.7 gi|330507531|ref|YP_004383959.1| - 0.0018 17.3 0.0 0.005 15.9 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|330507531|ref|YP_004383959.1| - 0.0029 17.0 1.0 0.14 11.5 0.3 2.6 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|330507531|ref|YP_004383959.1| - 0.0046 16.6 0.0 0.015 15.0 0.0 2.0 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|330507531|ref|YP_004383959.1| - 0.0066 15.8 0.1 0.018 14.4 0.1 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|330507531|ref|YP_004383959.1| - 0.025 14.3 0.1 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_30 PF13604.1 gi|330507531|ref|YP_004383959.1| - 0.04 13.4 1.1 1.1 8.7 0.6 2.7 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|330507531|ref|YP_004383959.1| - 0.042 13.3 0.0 4.9 6.6 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_24 PF13479.1 gi|330507531|ref|YP_004383959.1| - 0.049 13.2 0.0 0.086 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|330507531|ref|YP_004383959.1| - 0.079 12.9 0.0 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.8 gi|330507531|ref|YP_004383959.1| - 0.091 11.4 0.0 0.16 10.6 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Pyridox_ox_2 PF12900.2 gi|330507532|ref|YP_004383960.1| - 7.3e-25 87.4 0.0 8.3e-25 87.2 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|330507532|ref|YP_004383960.1| - 5.7e-15 55.1 0.0 7.4e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase CPSase_L_D2 PF02786.12 gi|330507533|ref|YP_004383961.1| - 3.7e-75 251.8 0.0 5.5e-75 251.2 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|330507533|ref|YP_004383961.1| - 8.8e-43 144.8 0.0 2.4e-42 143.4 0.0 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|330507533|ref|YP_004383961.1| - 1.6e-39 134.1 0.0 4.6e-39 132.7 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|330507533|ref|YP_004383961.1| - 6.5e-14 52.0 0.0 1.9e-13 50.5 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330507533|ref|YP_004383961.1| - 1.4e-12 46.9 0.0 2e-11 43.2 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|330507533|ref|YP_004383961.1| - 3.1e-10 39.7 0.0 7.4e-10 38.5 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|330507533|ref|YP_004383961.1| - 6e-07 29.1 0.0 1.7e-06 27.6 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|330507533|ref|YP_004383961.1| - 1.3e-06 28.3 0.0 2.3e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|330507533|ref|YP_004383961.1| - 0.0019 17.5 0.0 0.0034 16.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain OAD_gamma PF04277.8 gi|330507533|ref|YP_004383961.1| - 0.0077 16.5 0.2 0.016 15.5 0.1 1.5 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain Peripla_BP_3 PF13377.1 gi|330507533|ref|YP_004383961.1| - 0.096 12.6 0.0 3.1 7.7 0.0 2.4 2 0 0 2 2 2 0 Periplasmic binding protein-like domain BPL_LplA_LipB PF03099.14 gi|330507534|ref|YP_004383962.1| - 1.5e-22 79.9 0.0 2e-22 79.5 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|330507534|ref|YP_004383962.1| - 4.6e-08 32.6 0.1 8.3e-08 31.8 0.1 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain Prok-JAB PF14464.1 gi|330507535|ref|YP_004383963.1| - 1.6e-10 40.4 0.0 2e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|330507535|ref|YP_004383963.1| - 0.038 13.7 0.0 0.13 11.9 0.0 1.8 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|330507535|ref|YP_004383963.1| - 0.067 12.8 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain CTP_transf_2 PF01467.21 gi|330507536|ref|YP_004383964.1| - 1.5e-15 57.5 0.0 2.2e-15 57.0 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|330507536|ref|YP_004383964.1| - 0.17 11.5 0.2 0.68 9.5 0.1 2.2 2 1 0 2 2 2 0 FAD synthetase CTP_transf_2 PF01467.21 gi|330507537|ref|YP_004383965.1| - 2.1e-13 50.6 0.0 6.4e-13 49.0 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|330507537|ref|YP_004383965.1| - 0.0011 18.6 0.0 0.0022 17.6 0.0 1.4 2 0 0 2 2 2 1 FAD synthetase ATP-sulfurylase PF01747.12 gi|330507537|ref|YP_004383965.1| - 0.046 13.0 0.0 0.77 9.0 0.0 2.1 1 1 1 2 2 2 0 ATP-sulfurylase Pyr_redox PF00070.22 gi|330507538|ref|YP_004383966.1| - 1.7e-20 73.1 0.4 1.2e-15 57.6 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|330507538|ref|YP_004383966.1| - 2.5e-18 66.7 0.0 5.7e-18 65.5 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|330507538|ref|YP_004383966.1| - 9.1e-06 24.8 7.9 0.044 12.6 0.0 4.1 2 2 2 4 4 4 2 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|330507538|ref|YP_004383966.1| - 3e-05 23.6 0.0 0.044 13.3 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|330507538|ref|YP_004383966.1| - 0.00067 19.3 0.1 0.31 10.6 0.0 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|330507538|ref|YP_004383966.1| - 0.001 19.4 0.0 0.51 10.6 0.0 2.3 2 0 0 2 2 2 2 XdhC Rossmann domain Pyr_redox_3 PF13738.1 gi|330507538|ref|YP_004383966.1| - 0.0015 18.5 1.0 0.025 14.6 0.0 2.7 1 1 2 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Semialdhyde_dh PF01118.19 gi|330507538|ref|YP_004383966.1| - 0.013 15.7 0.1 3.2 8.0 0.0 2.8 3 0 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|330507538|ref|YP_004383966.1| - 0.032 14.2 0.1 1.7 8.7 0.0 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|330507538|ref|YP_004383966.1| - 0.033 13.0 3.1 0.18 10.7 0.0 2.4 1 1 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|330507538|ref|YP_004383966.1| - 0.064 13.5 0.1 1.6 9.0 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding GIDA PF01134.17 gi|330507538|ref|YP_004383966.1| - 0.12 11.2 2.0 6.6 5.4 0.0 2.5 2 1 0 2 2 2 0 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|330507538|ref|YP_004383966.1| - 0.34 9.7 1.4 33 3.2 0.0 2.8 2 1 1 3 3 3 0 Lycopene cyclase protein HTH_7 PF02796.10 gi|330507539|ref|YP_004383967.1| - 0.032 14.0 0.0 0.059 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|330507539|ref|YP_004383967.1| - 0.033 13.5 0.0 0.26 10.6 0.0 2.4 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|330507539|ref|YP_004383967.1| - 0.038 13.6 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_26 PF13443.1 gi|330507539|ref|YP_004383967.1| - 0.13 12.4 0.6 2.3 8.4 0.0 2.7 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain Endothelin PF00322.12 gi|330507539|ref|YP_004383967.1| - 0.92 8.7 5.7 1.9 7.8 0.9 2.3 2 0 0 2 2 2 0 Endothelin family RVT_3 PF13456.1 gi|330507541|ref|YP_004383969.1| - 1.4e-16 60.0 0.0 1.7e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|330507541|ref|YP_004383969.1| - 1.3e-11 45.0 0.0 1.5e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 RNase H DUF3829 PF12889.2 gi|330507541|ref|YP_004383969.1| - 0.052 12.7 0.1 0.06 12.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) DUF1016 PF06250.6 gi|330507542|ref|YP_004383970.1| - 3.5e-123 410.6 0.3 4.1e-123 410.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1016) THDPS_N_2 PF14805.1 gi|330507542|ref|YP_004383970.1| - 0.024 14.5 0.2 1.9 8.4 0.0 2.5 2 0 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal Herpes_IE68 PF02479.11 gi|330507543|ref|YP_004383971.1| - 0.055 12.6 0.0 0.067 12.3 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus immediate early protein ALAD PF00490.16 gi|330507544|ref|YP_004383972.1| - 8.4e-139 461.9 0.0 9.4e-139 461.7 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Shikimate_DH PF01488.15 gi|330507545|ref|YP_004383973.1| - 1.6e-34 118.9 0.4 4.4e-34 117.4 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.10 gi|330507545|ref|YP_004383973.1| - 4e-33 114.1 1.2 5.7e-33 113.6 0.1 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.15 gi|330507545|ref|YP_004383973.1| - 2.6e-22 78.6 4.1 4.9e-22 77.7 2.9 1.4 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|330507545|ref|YP_004383973.1| - 0.00027 21.3 0.7 0.00098 19.5 0.0 2.3 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.10 gi|330507545|ref|YP_004383973.1| - 0.0055 15.5 0.0 0.0091 14.7 0.0 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family THF_DHG_CYH_C PF02882.14 gi|330507545|ref|YP_004383973.1| - 0.012 14.7 0.1 0.057 12.4 0.0 2.2 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.14 gi|330507545|ref|YP_004383973.1| - 0.013 14.6 0.0 0.025 13.7 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LVIVD PF08309.6 gi|330507545|ref|YP_004383973.1| - 0.015 14.3 0.1 0.029 13.3 0.1 1.4 1 0 0 1 1 1 0 LVIVD repeat DUF2204 PF09970.4 gi|330507545|ref|YP_004383973.1| - 0.048 13.1 1.4 0.15 11.5 1.0 1.9 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) NAD_binding_7 PF13241.1 gi|330507545|ref|YP_004383973.1| - 0.053 13.7 0.0 0.24 11.6 0.0 2.2 2 0 0 2 2 2 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|330507545|ref|YP_004383973.1| - 0.12 12.4 0.1 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|330507545|ref|YP_004383973.1| - 0.19 11.5 1.6 0.33 10.7 0.1 2.1 2 1 1 3 3 3 0 ThiF family NAD_binding_7 PF13241.1 gi|330507546|ref|YP_004383974.1| - 8.8e-16 58.0 0.0 1.4e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.1 gi|330507546|ref|YP_004383974.1| - 0.022 13.7 0.1 0.046 12.7 0.1 1.6 1 0 0 1 1 1 0 Sirohaem biosynthesis protein central HTH_AsnC-type PF13404.1 gi|330507547|ref|YP_004383975.1| - 0.0032 16.9 0.9 0.0065 15.9 0.1 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain NosD PF05048.8 gi|330507548|ref|YP_004383976.1| - 1.6e-62 210.7 51.2 4.6e-27 94.6 13.8 4.5 1 1 2 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|330507548|ref|YP_004383976.1| - 4.3e-56 189.0 111.2 6.1e-14 52.0 0.7 4.9 2 2 4 6 6 6 6 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|330507548|ref|YP_004383976.1| - 0.0039 17.3 6.8 0.012 15.7 1.4 5.7 2 2 1 4 4 4 2 Pectate lyase superfamily protein Response_reg PF00072.19 gi|330507549|ref|YP_004383977.1| - 2.7e-18 65.9 0.0 6.8e-18 64.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|330507549|ref|YP_004383977.1| - 1.1e-09 38.5 0.0 5.3e-09 36.3 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|330507549|ref|YP_004383977.1| - 1.5e-08 34.6 0.0 3e-08 33.6 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|330507549|ref|YP_004383977.1| - 2.6e-08 33.8 0.0 7.3e-08 32.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|330507549|ref|YP_004383977.1| - 1.1e-05 25.1 0.0 3.1e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|330507549|ref|YP_004383977.1| - 6.9e-05 22.5 0.0 0.00065 19.4 0.0 2.5 3 0 0 3 3 3 1 PAS domain GAF_2 PF13185.1 gi|330507549|ref|YP_004383977.1| - 0.0011 19.5 0.1 0.0022 18.5 0.1 1.5 1 0 0 1 1 1 1 GAF domain Chorismate_synt PF01264.16 gi|330507550|ref|YP_004383978.1| - 5.2e-153 508.5 0.1 5.9e-153 508.4 0.1 1.0 1 0 0 1 1 1 1 Chorismate synthase MoeA_N PF03453.12 gi|330507551|ref|YP_004383979.1| - 2.6e-43 147.2 0.2 3.9e-43 146.6 0.1 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|330507551|ref|YP_004383979.1| - 3.7e-29 100.9 0.0 8.2e-29 99.8 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|330507551|ref|YP_004383979.1| - 6.5e-15 54.5 0.0 7.6e-14 51.0 0.0 2.2 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.10 gi|330507551|ref|YP_004383979.1| - 1.4e-10 40.9 0.1 5.6e-10 39.0 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) LysR_substrate PF03466.15 gi|330507551|ref|YP_004383979.1| - 0.00063 18.9 0.0 0.2 10.7 0.0 2.4 1 1 1 2 2 2 2 LysR substrate binding domain T2SE PF00437.15 gi|330507551|ref|YP_004383979.1| - 0.16 10.8 0.0 0.26 10.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DNA_primase_lrg PF04104.9 gi|330507552|ref|YP_004383980.1| - 1.6e-34 119.3 0.0 2.7e-34 118.6 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_C PF02747.10 gi|330507553|ref|YP_004383981.1| - 6.9e-16 58.3 0.0 3.5e-12 46.3 0.0 3.6 2 2 1 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.13 gi|330507553|ref|YP_004383981.1| - 1e-15 57.3 0.4 2.2e-15 56.2 0.2 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.8 gi|330507553|ref|YP_004383981.1| - 2.7e-05 23.4 0.0 0.00062 18.9 0.0 2.1 2 0 0 2 2 2 1 Rad9 DNA_pol3_beta PF00712.14 gi|330507553|ref|YP_004383981.1| - 0.034 14.0 0.1 0.17 11.7 0.1 2.1 2 1 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain DNA_pol3_beta_3 PF02768.10 gi|330507553|ref|YP_004383981.1| - 0.18 11.3 0.6 0.99 8.9 0.4 2.2 1 1 0 1 1 1 0 DNA polymerase III beta subunit, C-terminal domain TFIIS_C PF01096.13 gi|330507554|ref|YP_004383982.1| - 3.7e-18 64.8 12.2 3.1e-17 61.9 2.1 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|330507554|ref|YP_004383982.1| - 9.9e-08 31.5 4.1 9.9e-08 31.5 2.8 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|330507554|ref|YP_004383982.1| - 1e-06 28.4 7.8 0.00041 20.1 1.0 2.3 2 1 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330507554|ref|YP_004383982.1| - 1.7e-05 23.8 9.7 0.00035 19.6 0.2 3.1 3 0 0 3 3 3 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|330507554|ref|YP_004383982.1| - 0.00036 20.2 13.2 0.00063 19.4 0.7 3.2 2 1 1 3 3 3 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|330507554|ref|YP_004383982.1| - 0.00045 19.8 8.5 0.12 12.0 0.8 2.3 2 1 0 2 2 2 2 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.7 gi|330507554|ref|YP_004383982.1| - 0.00083 19.0 6.7 1.1 9.0 0.0 3.5 2 2 0 2 2 2 2 PhnA Zinc-Ribbon Prok-RING_1 PF14446.1 gi|330507554|ref|YP_004383982.1| - 0.0015 18.2 8.3 0.027 14.1 1.1 3.0 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|330507554|ref|YP_004383982.1| - 0.0033 17.1 9.1 0.0034 17.1 0.7 2.9 2 1 0 2 2 2 1 zinc-ribbons Auto_anti-p27 PF06677.7 gi|330507554|ref|YP_004383982.1| - 0.0034 17.1 10.2 0.012 15.3 4.1 2.4 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_RNApol_7kD PF03604.8 gi|330507554|ref|YP_004383982.1| - 0.0036 16.7 6.1 1.6 8.2 0.7 3.3 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit Ogr_Delta PF04606.7 gi|330507554|ref|YP_004383982.1| - 0.0039 16.8 10.7 0.065 12.9 0.5 3.2 3 0 0 3 3 3 1 Ogr/Delta-like zinc finger UPF0547 PF10571.4 gi|330507554|ref|YP_004383982.1| - 0.0051 16.4 10.2 0.23 11.1 0.0 3.1 3 1 0 3 3 2 2 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|330507554|ref|YP_004383982.1| - 0.011 15.2 17.2 0.14 11.7 0.4 4.1 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|330507554|ref|YP_004383982.1| - 0.013 15.2 17.5 0.16 11.6 0.6 4.1 3 1 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|330507554|ref|YP_004383982.1| - 0.013 14.7 13.2 0.018 14.3 0.3 3.4 2 1 0 2 2 2 0 TFIIB zinc-binding RRN7 PF11781.3 gi|330507554|ref|YP_004383982.1| - 0.018 14.5 12.2 0.32 10.5 0.8 3.8 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zinc_ribbon_2 PF13240.1 gi|330507554|ref|YP_004383982.1| - 0.021 14.2 18.8 1 8.9 0.4 4.0 3 1 1 4 4 4 0 zinc-ribbon domain DUF2387 PF09526.5 gi|330507554|ref|YP_004383982.1| - 0.029 14.2 9.0 0.19 11.6 0.2 2.7 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Nudix_N_2 PF14803.1 gi|330507554|ref|YP_004383982.1| - 0.044 13.4 10.2 5.2 6.8 0.8 4.0 3 1 0 3 3 3 0 Nudix N-terminal zf-BED PF02892.10 gi|330507554|ref|YP_004383982.1| - 0.058 13.1 2.3 2.4 7.9 0.3 3.0 3 0 0 3 3 3 0 BED zinc finger Zn-ribbon_8 PF09723.5 gi|330507554|ref|YP_004383982.1| - 0.14 12.1 16.4 2.1 8.3 0.1 4.2 3 1 0 3 3 3 0 Zinc ribbon domain TSKS PF15358.1 gi|330507554|ref|YP_004383982.1| - 0.14 10.2 0.6 0.15 10.1 0.4 1.1 1 0 0 1 1 1 0 Testis-specific serine kinase substrate PHF5 PF03660.9 gi|330507554|ref|YP_004383982.1| - 0.22 11.5 4.1 0.38 10.8 0.3 2.2 1 1 1 2 2 2 0 PHF5-like protein zf-C4_Topoisom PF01396.14 gi|330507554|ref|YP_004383982.1| - 0.25 10.8 12.6 1 8.9 0.0 3.6 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger C1_4 PF07975.7 gi|330507554|ref|YP_004383982.1| - 0.27 11.2 7.3 5 7.2 0.1 3.3 3 1 0 3 3 3 0 TFIIH C1-like domain C1_1 PF00130.17 gi|330507554|ref|YP_004383982.1| - 0.29 10.9 8.2 4 7.2 0.3 2.4 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) FYVE PF01363.16 gi|330507554|ref|YP_004383982.1| - 0.31 10.9 7.6 3.4 7.6 5.2 2.4 1 1 0 1 1 1 0 FYVE zinc finger GFA PF04828.9 gi|330507554|ref|YP_004383982.1| - 0.42 10.5 11.3 1.2 9.1 0.5 3.7 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-DNA_Pol PF08996.5 gi|330507554|ref|YP_004383982.1| - 0.49 9.7 5.1 0.23 10.7 0.1 2.3 1 1 2 3 3 3 0 DNA Polymerase alpha zinc finger DUF3797 PF12677.2 gi|330507554|ref|YP_004383982.1| - 0.5 10.0 0.1 0.5 10.0 0.1 3.7 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) IBR PF01485.16 gi|330507554|ref|YP_004383982.1| - 0.56 10.1 12.4 0.69 9.8 1.5 2.9 2 1 0 2 2 2 0 IBR domain HypA PF01155.14 gi|330507554|ref|YP_004383982.1| - 0.57 9.8 10.4 0.97 9.1 1.0 2.8 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family PHD PF00628.24 gi|330507554|ref|YP_004383982.1| - 0.71 9.6 8.6 2.1 8.0 1.3 3.0 3 0 0 3 3 3 0 PHD-finger PolC_DP2 PF03833.8 gi|330507554|ref|YP_004383982.1| - 0.73 7.4 4.5 1.2 6.7 0.2 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 zf-IS66 PF13005.2 gi|330507554|ref|YP_004383982.1| - 0.86 9.6 8.6 15 5.6 0.0 3.8 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-ISL3 PF14690.1 gi|330507554|ref|YP_004383982.1| - 0.91 9.5 13.2 4.7 7.3 0.0 4.0 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_recom PF13408.1 gi|330507554|ref|YP_004383982.1| - 1.1 9.5 14.0 1.8 8.8 0.7 3.2 2 2 1 3 3 3 0 Recombinase zinc beta ribbon domain Rubredoxin PF00301.15 gi|330507554|ref|YP_004383982.1| - 1.6 8.6 8.9 23 4.9 0.0 3.9 4 0 0 4 4 4 0 Rubredoxin DUF4428 PF14471.1 gi|330507554|ref|YP_004383982.1| - 2 8.2 6.6 0.17 11.6 0.3 2.3 3 0 0 3 3 2 0 Domain of unknown function (DUF4428) Rpr2 PF04032.11 gi|330507554|ref|YP_004383982.1| - 2.1 8.2 9.1 1.8e+02 2.1 6.3 2.7 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-RING_4 PF14570.1 gi|330507554|ref|YP_004383982.1| - 2.3 7.8 10.8 19 4.9 0.1 3.8 3 1 0 4 4 4 0 RING/Ubox like zinc-binding domain zf-AN1 PF01428.11 gi|330507554|ref|YP_004383982.1| - 2.9 7.8 10.0 22 5.0 0.0 3.2 3 0 0 3 3 3 0 AN1-like Zinc finger zf-C3HC4_3 PF13920.1 gi|330507554|ref|YP_004383982.1| - 2.9 7.6 11.2 12 5.6 5.5 3.1 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) CpXC PF14353.1 gi|330507554|ref|YP_004383982.1| - 3.3 7.7 7.9 2.4 8.1 0.6 3.2 2 1 1 3 3 3 0 CpXC protein DUF2318 PF10080.4 gi|330507554|ref|YP_004383982.1| - 4.1 7.2 6.3 0.69 9.7 0.4 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2318) DUF35_N PF12172.3 gi|330507554|ref|YP_004383982.1| - 4.6 7.2 9.1 9.5 6.2 0.1 3.7 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rep_fac-A_C PF08646.5 gi|330507554|ref|YP_004383982.1| - 4.6 6.9 11.1 0.89 9.2 0.9 2.7 2 1 1 3 3 3 0 Replication factor-A C terminal domain DiS_P_DiS PF06750.8 gi|330507554|ref|YP_004383982.1| - 5 6.9 8.7 2.4 8.0 0.6 3.3 2 1 1 3 3 3 0 Bacterial Peptidase A24 N-terminal domain zf-NADH-PPase PF09297.6 gi|330507554|ref|YP_004383982.1| - 5.3 6.6 15.3 2.6 7.6 3.6 3.2 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L32p PF01783.18 gi|330507554|ref|YP_004383982.1| - 5.7 7.2 6.7 7.2 6.8 1.0 2.8 3 1 0 3 3 2 0 Ribosomal L32p protein family Terminase_GpA PF05876.7 gi|330507554|ref|YP_004383982.1| - 5.7 5.1 6.6 1.7 6.9 1.4 1.8 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) A2L_zn_ribbon PF08792.5 gi|330507554|ref|YP_004383982.1| - 7.2 6.1 14.3 12 5.5 2.3 3.9 3 1 1 4 4 4 0 A2L zinc ribbon domain zf-LITAF-like PF10601.4 gi|330507554|ref|YP_004383982.1| - 7.4 6.5 10.7 6.7 6.6 0.0 3.6 3 1 1 4 4 4 0 LITAF-like zinc ribbon domain Fer4_9 PF13187.1 gi|330507554|ref|YP_004383982.1| - 9.3 6.6 8.0 39 4.6 5.6 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain ACT PF01842.20 gi|330507555|ref|YP_004383983.1| - 1.9e-08 33.6 0.1 7e-08 31.8 0.0 2.0 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|330507555|ref|YP_004383983.1| - 0.00035 20.8 0.0 0.0014 18.9 0.0 2.0 1 1 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|330507555|ref|YP_004383983.1| - 0.0005 19.7 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 ACT domain Peripla_BP_1 PF00532.16 gi|330507555|ref|YP_004383983.1| - 0.048 12.8 0.2 0.64 9.1 0.0 2.2 1 1 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family Glutaredoxin PF00462.19 gi|330507556|ref|YP_004383984.1| - 8.3e-06 25.7 0.0 1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.9 gi|330507556|ref|YP_004383984.1| - 0.001 19.2 0.0 0.0012 19.0 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|330507556|ref|YP_004383984.1| - 0.064 13.0 0.2 0.12 12.2 0.2 1.5 1 1 1 2 2 2 0 Thioredoxin domain ArsC PF03960.10 gi|330507556|ref|YP_004383984.1| - 0.12 12.4 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 ArsC family CBFD_NFYB_HMF PF00808.18 gi|330507558|ref|YP_004383986.1| - 5.9e-17 61.4 0.0 6.6e-17 61.3 0.0 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|330507558|ref|YP_004383986.1| - 2.4e-13 50.0 0.1 2.8e-13 49.7 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.8 gi|330507558|ref|YP_004383986.1| - 9.7e-09 34.8 0.0 1.2e-08 34.6 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TAF PF02969.12 gi|330507558|ref|YP_004383986.1| - 2e-05 24.4 0.0 2.2e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.1 gi|330507558|ref|YP_004383986.1| - 0.00024 21.2 0.0 0.00026 21.1 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID-31kDa PF02291.10 gi|330507558|ref|YP_004383986.1| - 0.00032 20.5 0.0 0.00035 20.3 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-T PF15511.1 gi|330507558|ref|YP_004383986.1| - 0.0072 15.6 0.0 0.0082 15.4 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T AAA_32 PF13654.1 gi|330507558|ref|YP_004383986.1| - 0.033 12.8 0.4 0.034 12.7 0.3 1.2 1 0 0 1 1 1 0 AAA domain Apo-CIII PF05778.7 gi|330507558|ref|YP_004383986.1| - 0.06 12.7 0.1 0.081 12.3 0.1 1.2 1 0 0 1 1 1 0 Apolipoprotein CIII (Apo-CIII) GatB_N PF02934.10 gi|330507559|ref|YP_004383987.1| - 4.4e-73 245.6 0.0 6.4e-73 245.1 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|330507559|ref|YP_004383987.1| - 3.1e-22 78.9 0.2 6.5e-22 77.8 0.1 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|330507559|ref|YP_004383987.1| - 2.9e-11 43.3 0.0 1.7e-10 40.8 0.0 2.3 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|330507559|ref|YP_004383987.1| - 0.003 17.4 1.3 0.0056 16.5 0.9 1.4 1 0 0 1 1 1 1 Yqey-like protein AAA_16 PF13191.1 gi|330507560|ref|YP_004383988.1| - 6.5e-15 55.5 0.0 1.4e-14 54.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|330507560|ref|YP_004383988.1| - 1.8e-08 34.5 0.0 4.9e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|330507560|ref|YP_004383988.1| - 8.7e-07 28.5 0.1 2.3e-06 27.2 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA PF00004.24 gi|330507560|ref|YP_004383988.1| - 7e-05 23.0 0.0 0.00017 21.8 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|330507560|ref|YP_004383988.1| - 0.00057 19.5 0.0 0.00092 18.8 0.0 1.6 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|330507560|ref|YP_004383988.1| - 0.0032 17.1 0.0 0.0091 15.7 0.0 1.8 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|330507560|ref|YP_004383988.1| - 0.0033 17.0 0.0 0.0066 16.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_19 PF13245.1 gi|330507560|ref|YP_004383988.1| - 0.0045 16.7 0.1 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|330507560|ref|YP_004383988.1| - 0.017 14.6 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|330507560|ref|YP_004383988.1| - 0.023 13.3 0.0 0.036 12.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|330507560|ref|YP_004383988.1| - 0.034 13.0 0.0 0.058 12.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|330507560|ref|YP_004383988.1| - 0.045 13.1 0.2 11 5.4 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein SRP54 PF00448.17 gi|330507560|ref|YP_004383988.1| - 0.05 13.0 0.0 0.086 12.2 0.0 1.4 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain DUF815 PF05673.8 gi|330507560|ref|YP_004383988.1| - 0.06 12.2 0.0 0.14 11.0 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF815) NTPase_1 PF03266.10 gi|330507560|ref|YP_004383988.1| - 0.076 12.7 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_33 PF13671.1 gi|330507560|ref|YP_004383988.1| - 0.097 12.5 0.0 0.28 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|330507560|ref|YP_004383988.1| - 0.1 12.7 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|330507560|ref|YP_004383988.1| - 0.12 12.2 0.0 0.52 10.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_35 PF14516.1 gi|330507560|ref|YP_004383988.1| - 0.14 10.7 0.1 0.58 8.7 0.0 1.8 1 1 1 2 2 2 0 AAA-like domain DUF2075 PF09848.4 gi|330507560|ref|YP_004383988.1| - 0.16 10.9 0.0 0.23 10.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) BPD_transp_1 PF00528.17 gi|330507561|ref|YP_004383989.1| - 1.1e-26 93.4 10.2 1.1e-26 93.4 7.0 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component GPI2 PF06432.6 gi|330507561|ref|YP_004383989.1| - 2.6 7.3 6.1 0.49 9.6 0.9 2.2 2 1 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase BPD_transp_1 PF00528.17 gi|330507562|ref|YP_004383990.1| - 3.4e-22 78.8 12.6 3.4e-22 78.8 8.8 3.0 3 2 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component HTH_45 PF14947.1 gi|330507564|ref|YP_004383992.1| - 1.1e-09 37.9 0.4 1.8e-09 37.2 0.2 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|330507564|ref|YP_004383992.1| - 0.0019 18.1 0.0 0.0024 17.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain P53_tetramer PF07710.6 gi|330507564|ref|YP_004383992.1| - 0.0021 17.1 0.0 0.0038 16.3 0.0 1.4 1 0 0 1 1 1 1 P53 tetramerisation motif Rrf2 PF02082.15 gi|330507564|ref|YP_004383992.1| - 0.05 13.7 0.0 0.065 13.3 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.1 gi|330507564|ref|YP_004383992.1| - 0.067 13.3 0.1 0.097 12.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|330507564|ref|YP_004383992.1| - 0.15 11.4 0.2 0.3 10.5 0.2 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Glyco_tranf_2_3 PF13641.1 gi|330507565|ref|YP_004383993.1| - 8.9e-25 87.8 0.0 1.1e-24 87.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|330507565|ref|YP_004383993.1| - 3.3e-18 65.9 0.1 4.8e-18 65.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|330507565|ref|YP_004383993.1| - 4.6e-18 65.6 0.9 8.4e-18 64.7 0.6 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|330507565|ref|YP_004383993.1| - 4.7e-14 52.0 0.8 1.7e-13 50.2 0.3 1.9 1 1 1 2 2 2 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.10 gi|330507565|ref|YP_004383993.1| - 4.6e-06 25.3 9.6 1.4e-05 23.6 0.0 2.1 1 1 1 2 2 2 1 Chitin synthase Glyco_tranf_2_4 PF13704.1 gi|330507565|ref|YP_004383993.1| - 0.00019 21.6 0.3 0.00038 20.7 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|330507565|ref|YP_004383993.1| - 0.051 12.6 3.0 0.045 12.8 1.1 1.5 2 0 0 2 2 2 0 Glycosyltransferase like family 2 CodY PF06018.9 gi|330507565|ref|YP_004383993.1| - 0.055 12.7 0.1 0.11 11.7 0.0 1.6 1 0 0 1 1 1 0 CodY GAF-like domain Rhodanese PF00581.15 gi|330507567|ref|YP_004383995.1| - 9.2e-28 96.8 0.0 1.9e-12 47.5 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain Carb_kinase PF01256.12 gi|330507568|ref|YP_004383996.1| - 1.6e-47 161.8 0.8 6.7e-47 159.8 0.6 2.0 3 0 0 3 3 3 1 Carbohydrate kinase YjeF_N PF03853.10 gi|330507568|ref|YP_004383996.1| - 3.4e-45 153.6 0.1 2.5e-43 147.6 0.0 2.2 2 0 0 2 2 2 2 YjeF-related protein N-terminus HK PF02110.10 gi|330507568|ref|YP_004383996.1| - 1.6e-05 24.2 0.1 2.5e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family DUF498 PF04430.9 gi|330507568|ref|YP_004383996.1| - 0.044 13.3 0.0 7.2 6.2 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) MoaC PF01967.16 gi|330507569|ref|YP_004383997.1| - 2.8e-47 159.8 0.6 3.1e-47 159.6 0.4 1.0 1 0 0 1 1 1 1 MoaC family SOUL PF04832.7 gi|330507570|ref|YP_004383998.1| - 7.8e-30 103.7 0.2 8.7e-30 103.5 0.1 1.0 1 0 0 1 1 1 1 SOUL heme-binding protein GyrI-like PF06445.10 gi|330507570|ref|YP_004383998.1| - 0.0078 16.2 0.0 0.0091 16.0 0.0 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Fic PF02661.13 gi|330507572|ref|YP_004384000.1| - 4.4e-07 30.5 0.3 0.0001 22.9 0.2 2.3 1 1 0 1 1 1 1 Fic/DOC family Antitoxin-MazE PF04014.13 gi|330507573|ref|YP_004384001.1| - 0.018 14.7 0.6 0.053 13.2 0.3 1.9 1 1 1 2 2 2 0 Antidote-toxin recognition MazE TOBE PF03459.12 gi|330507573|ref|YP_004384001.1| - 0.063 13.4 0.0 0.093 12.8 0.0 1.4 1 0 0 1 1 1 0 TOBE domain Antitoxin-MazE PF04014.13 gi|330507574|ref|YP_004384002.1| - 0.029 14.1 0.1 0.065 12.9 0.0 1.6 1 1 0 1 1 1 0 Antidote-toxin recognition MazE DUF104 PF01954.11 gi|330507574|ref|YP_004384002.1| - 0.038 14.0 0.7 0.056 13.4 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF104 DUF1052 PF06319.7 gi|330507574|ref|YP_004384002.1| - 0.11 11.7 0.1 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1052) PIN PF01850.16 gi|330507575|ref|YP_004384003.1| - 5.1e-15 55.8 1.6 1.9e-14 54.0 1.1 1.7 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|330507575|ref|YP_004384003.1| - 0.014 16.1 0.0 0.016 15.9 0.0 1.2 1 0 0 1 1 1 0 PIN domain CTP_synth_N PF06418.9 gi|330507577|ref|YP_004384005.1| - 3.7e-125 416.5 0.5 5.2e-125 416.0 0.3 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|330507577|ref|YP_004384005.1| - 1.6e-52 177.8 0.0 3.3e-52 176.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|330507577|ref|YP_004384005.1| - 4.1e-09 36.1 0.0 1.5e-07 31.0 0.0 2.4 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|330507577|ref|YP_004384005.1| - 1.5e-08 34.3 0.0 2.2e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Trm112p PF03966.11 gi|330507579|ref|YP_004384007.1| - 5e-12 45.9 2.2 9e-12 45.1 1.5 1.4 1 1 0 1 1 1 1 Trm112p-like protein Prim_Zn_Ribbon PF08273.7 gi|330507579|ref|YP_004384007.1| - 0.0039 17.2 0.1 0.0047 16.9 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.1 gi|330507579|ref|YP_004384007.1| - 0.014 15.6 0.4 0.018 15.3 0.3 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar Elf1 PF05129.8 gi|330507579|ref|YP_004384007.1| - 0.056 13.1 0.1 0.059 13.0 0.1 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-DNA_Pol PF08996.5 gi|330507579|ref|YP_004384007.1| - 0.094 12.0 0.0 0.094 12.0 0.0 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Amidohydro_2 PF04909.9 gi|330507580|ref|YP_004384008.1| - 4.1e-30 105.2 0.1 5.5e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|330507580|ref|YP_004384008.1| - 0.14 11.3 0.0 1.5 7.9 0.0 2.0 2 0 0 2 2 2 0 TatD related DNase TP6A_N PF04406.9 gi|330507581|ref|YP_004384009.1| - 2.4e-20 71.9 0.2 4.2e-20 71.1 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.6 gi|330507582|ref|YP_004384010.1| - 5.1e-65 217.8 0.0 9.1e-65 217.0 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|330507582|ref|YP_004384010.1| - 3e-15 55.9 0.0 2.1e-14 53.1 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|330507582|ref|YP_004384010.1| - 8.5e-10 38.4 0.0 1.7e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|330507582|ref|YP_004384010.1| - 0.002 16.7 1.0 0.0026 16.4 0.0 1.6 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_2 PF13581.1 gi|330507582|ref|YP_004384010.1| - 0.026 14.3 0.1 0.15 11.8 0.0 2.2 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain AsnC_trans_reg PF01037.16 gi|330507583|ref|YP_004384011.1| - 2.2e-11 43.3 0.4 2.4e-11 43.1 0.3 1.0 1 0 0 1 1 1 1 AsnC family NapD PF03927.8 gi|330507583|ref|YP_004384011.1| - 0.0018 18.0 1.4 0.0023 17.7 1.0 1.1 1 0 0 1 1 1 1 NapD protein GYD PF08734.6 gi|330507583|ref|YP_004384011.1| - 0.0065 16.1 0.2 0.0071 16.0 0.1 1.2 1 0 0 1 1 1 1 GYD domain ACT_4 PF13291.1 gi|330507583|ref|YP_004384011.1| - 0.016 15.5 0.2 0.59 10.5 0.1 2.1 2 0 0 2 2 2 0 ACT domain Spt5-NGN PF03439.8 gi|330507583|ref|YP_004384011.1| - 0.069 12.9 0.3 0.19 11.5 0.2 1.7 1 1 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section DRY_EERY PF09750.4 gi|330507584|ref|YP_004384012.1| - 0.059 13.4 0.4 0.1 12.6 0.3 1.4 1 0 0 1 1 1 0 Alternative splicing regulator tRNA_anti-codon PF01336.20 gi|330507585|ref|YP_004384013.1| - 0.00022 21.0 0.0 0.24 11.3 0.0 2.7 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain NTR PF01759.16 gi|330507585|ref|YP_004384013.1| - 0.065 12.7 0.2 16 5.0 0.0 3.0 2 1 1 3 3 3 0 UNC-6/NTR/C345C module Fusion_gly PF00523.13 gi|330507585|ref|YP_004384013.1| - 0.13 10.3 0.0 0.25 9.3 0.0 1.4 2 0 0 2 2 2 0 Fusion glycoprotein F0 Nop PF01798.13 gi|330507586|ref|YP_004384014.1| - 1.9e-45 153.8 0.1 3e-45 153.1 0.1 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|330507586|ref|YP_004384014.1| - 0.015 15.0 0.2 0.029 14.1 0.1 1.4 1 0 0 1 1 1 0 NOSIC (NUC001) domain Mvb12 PF09452.5 gi|330507586|ref|YP_004384014.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 ESCRT-I subunit Mvb12 DUF2099 PF09872.4 gi|330507588|ref|YP_004384016.1| - 5.9e-103 343.3 0.4 6.7e-103 343.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) TrmB PF01978.14 gi|330507589|ref|YP_004384017.1| - 0.00016 21.3 0.1 0.00029 20.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|330507589|ref|YP_004384017.1| - 0.12 12.0 0.1 0.24 11.0 0.1 1.5 1 0 0 1 1 1 0 MarR family Tubulin PF00091.20 gi|330507590|ref|YP_004384018.1| - 4.7e-39 134.4 0.2 1.6e-38 132.7 0.2 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|330507590|ref|YP_004384018.1| - 1.9e-33 114.3 1.1 5.7e-33 112.8 0.8 1.9 1 0 0 1 1 1 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|330507590|ref|YP_004384018.1| - 0.018 14.8 1.0 0.043 13.6 0.1 2.1 2 1 1 3 3 3 0 ThiF family HTH_24 PF13412.1 gi|330507591|ref|YP_004384019.1| - 8e-06 25.1 0.3 1.3e-05 24.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|330507591|ref|YP_004384019.1| - 0.00032 20.5 0.4 0.00062 19.6 0.1 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|330507591|ref|YP_004384019.1| - 0.00034 20.2 0.0 0.00057 19.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|330507591|ref|YP_004384019.1| - 0.00093 18.8 0.2 0.0028 17.3 0.1 2.0 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain Rrf2 PF02082.15 gi|330507591|ref|YP_004384019.1| - 0.0011 18.9 0.1 0.0018 18.3 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|330507591|ref|YP_004384019.1| - 0.0016 18.1 0.0 0.0032 17.2 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|330507591|ref|YP_004384019.1| - 0.0034 17.0 0.4 0.006 16.2 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FaeA PF04703.7 gi|330507591|ref|YP_004384019.1| - 0.0039 17.3 0.0 0.0061 16.6 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_27 PF13463.1 gi|330507591|ref|YP_004384019.1| - 0.013 15.7 0.1 0.023 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.16 gi|330507591|ref|YP_004384019.1| - 0.019 14.3 0.1 0.027 13.9 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4423 PF14394.1 gi|330507591|ref|YP_004384019.1| - 0.024 14.1 0.1 0.059 12.9 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) RepL PF05732.6 gi|330507591|ref|YP_004384019.1| - 0.037 13.2 0.0 0.053 12.7 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) RPA_C PF08784.6 gi|330507591|ref|YP_004384019.1| - 0.039 14.3 0.0 0.058 13.8 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal MerR PF00376.18 gi|330507591|ref|YP_004384019.1| - 0.04 13.4 0.0 11 5.7 0.0 2.5 3 0 0 3 3 3 0 MerR family regulatory protein MarR_2 PF12802.2 gi|330507591|ref|YP_004384019.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 MarR family DNA_ligase_A_N PF04675.9 gi|330507592|ref|YP_004384020.1| - 4.1e-32 111.4 0.0 1.6e-31 109.4 0.0 1.9 2 0 0 2 2 2 1 DNA ligase N terminus DNA_ligase_A_M PF01068.16 gi|330507592|ref|YP_004384020.1| - 6.7e-14 51.7 0.0 1e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain UPF0016 PF01169.14 gi|330507592|ref|YP_004384020.1| - 0.019 15.0 0.1 0.049 13.7 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein family UPF0016 Radical_SAM PF04055.16 gi|330507593|ref|YP_004384021.1| - 1.5e-10 41.4 0.0 2.5e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|330507593|ref|YP_004384021.1| - 3.7e-07 29.9 0.1 0.0019 17.7 1.2 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) Alveol-reg_P311 PF11092.3 gi|330507593|ref|YP_004384021.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 Neuronal protein 3.1 (p311) Cna_B PF05738.8 gi|330507594|ref|YP_004384022.1| - 6.5e-05 22.6 0.1 0.00018 21.1 0.1 1.8 1 0 0 1 1 1 1 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|330507594|ref|YP_004384022.1| - 0.0043 17.0 2.5 0.013 15.5 0.1 2.9 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF333 PF03891.10 gi|330507595|ref|YP_004384023.1| - 0.029 14.1 6.0 0.28 11.0 4.2 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF333) DAO PF01266.19 gi|330507596|ref|YP_004384024.1| - 2.4e-12 46.4 0.0 6e-05 22.1 0.0 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|330507596|ref|YP_004384024.1| - 9.6e-09 34.7 0.0 6.9e-06 25.3 0.0 2.6 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|330507596|ref|YP_004384024.1| - 3.4e-08 33.0 0.0 4.8e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|330507596|ref|YP_004384024.1| - 5.4e-07 28.5 0.7 0.0025 16.5 0.1 2.8 1 1 1 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|330507596|ref|YP_004384024.1| - 5.8e-07 29.6 0.0 1.1e-06 28.6 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|330507596|ref|YP_004384024.1| - 1e-06 27.9 0.0 2.2e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.17 gi|330507596|ref|YP_004384024.1| - 4.3e-06 25.8 0.0 5.7e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|330507596|ref|YP_004384024.1| - 1.5e-05 23.6 0.1 0.00023 19.7 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|330507596|ref|YP_004384024.1| - 1.6e-05 24.0 0.0 2.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|330507596|ref|YP_004384024.1| - 1.7e-05 25.0 0.0 2.5e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|330507596|ref|YP_004384024.1| - 3.2e-05 22.9 0.2 7.5e-05 21.7 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|330507596|ref|YP_004384024.1| - 0.00032 20.6 0.1 0.0012 18.7 0.0 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|330507596|ref|YP_004384024.1| - 0.0028 17.2 0.2 0.0071 15.9 0.1 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|330507596|ref|YP_004384024.1| - 0.038 14.4 0.0 0.13 12.6 0.0 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|330507596|ref|YP_004384024.1| - 0.11 11.6 0.1 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|330507596|ref|YP_004384024.1| - 0.14 12.4 0.0 0.3 11.4 0.0 1.7 1 0 0 1 1 1 0 XdhC Rossmann domain P-II PF00543.17 gi|330507597|ref|YP_004384025.1| - 4.5e-35 120.2 0.2 5e-35 120.0 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.16 gi|330507598|ref|YP_004384026.1| - 1.3e-127 425.5 43.4 1.5e-127 425.4 30.1 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family T2SE PF00437.15 gi|330507600|ref|YP_004384028.1| - 1.2e-11 44.0 0.0 2.1e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|330507600|ref|YP_004384028.1| - 5.7e-10 38.6 0.0 1.6e-09 37.2 0.0 1.8 1 0 0 1 1 1 1 KH domain PIN PF01850.16 gi|330507600|ref|YP_004384028.1| - 6.1e-08 33.0 0.0 1.4e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 PIN domain AAA_17 PF13207.1 gi|330507600|ref|YP_004384028.1| - 8e-07 29.9 0.0 3.2e-06 27.9 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|330507600|ref|YP_004384028.1| - 0.00028 20.5 0.0 0.00079 19.1 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain PIN_4 PF13638.1 gi|330507600|ref|YP_004384028.1| - 0.00032 20.8 0.0 0.0013 18.8 0.0 2.0 2 0 0 2 2 2 1 PIN domain KH_3 PF13014.1 gi|330507600|ref|YP_004384028.1| - 0.00042 19.8 0.4 0.0032 17.0 0.1 2.4 1 1 1 2 2 2 1 KH domain AAA_18 PF13238.1 gi|330507600|ref|YP_004384028.1| - 0.00069 19.9 0.0 0.0018 18.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|330507600|ref|YP_004384028.1| - 0.00095 19.0 0.0 0.0035 17.2 0.0 1.9 2 0 0 2 2 1 1 AAA domain KH_2 PF07650.12 gi|330507600|ref|YP_004384028.1| - 0.0022 17.4 0.1 0.012 15.1 0.0 2.3 1 0 0 1 1 1 1 KH domain AAA_14 PF13173.1 gi|330507600|ref|YP_004384028.1| - 0.0042 16.9 0.0 0.0083 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain KH_4 PF13083.1 gi|330507600|ref|YP_004384028.1| - 0.005 16.4 0.0 0.02 14.4 0.0 2.1 1 0 0 1 1 1 1 KH domain AAA_25 PF13481.1 gi|330507600|ref|YP_004384028.1| - 0.0062 15.9 0.0 0.02 14.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|330507600|ref|YP_004384028.1| - 0.0067 16.1 0.0 0.02 14.6 0.0 1.9 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|330507600|ref|YP_004384028.1| - 0.0079 15.6 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain KTI12 PF08433.5 gi|330507600|ref|YP_004384028.1| - 0.01 15.0 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|330507600|ref|YP_004384028.1| - 0.013 15.4 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|330507600|ref|YP_004384028.1| - 0.016 14.3 0.0 0.036 13.1 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|330507600|ref|YP_004384028.1| - 0.016 14.6 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain IstB_IS21 PF01695.12 gi|330507600|ref|YP_004384028.1| - 0.019 14.3 0.0 0.037 13.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ATP_bind_1 PF03029.12 gi|330507600|ref|YP_004384028.1| - 0.025 14.1 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|330507600|ref|YP_004384028.1| - 0.027 14.1 0.0 0.1 12.3 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|330507600|ref|YP_004384028.1| - 0.028 14.5 0.0 0.091 12.8 0.0 1.8 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|330507600|ref|YP_004384028.1| - 0.034 14.3 0.0 0.12 12.5 0.0 1.9 2 0 0 2 2 1 0 RNA helicase TIP49 PF06068.8 gi|330507600|ref|YP_004384028.1| - 0.038 12.7 0.8 0.057 12.1 0.0 1.6 2 0 0 2 2 2 0 TIP49 C-terminus Mg_chelatase PF01078.16 gi|330507600|ref|YP_004384028.1| - 0.043 12.9 0.0 0.084 12.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|330507600|ref|YP_004384028.1| - 0.051 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|330507600|ref|YP_004384028.1| - 0.06 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|330507600|ref|YP_004384028.1| - 0.076 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|330507600|ref|YP_004384028.1| - 0.16 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2413 PF10310.4 gi|330507602|ref|YP_004384030.1| - 0.5 9.1 7.3 0.63 8.7 5.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2413) Mcm10 PF09332.6 gi|330507602|ref|YP_004384030.1| - 1.3 8.3 5.1 1.7 7.9 3.5 1.1 1 0 0 1 1 1 0 Mcm10 replication factor Alpha_GJ PF03229.8 gi|330507602|ref|YP_004384030.1| - 6.5 7.1 8.9 4.5 7.6 5.0 1.7 1 1 1 2 2 2 0 Alphavirus glycoprotein J MutS_V PF00488.16 gi|330507603|ref|YP_004384031.1| - 1.4e-98 329.0 0.1 2.1e-98 328.4 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|330507603|ref|YP_004384031.1| - 3.4e-48 164.1 5.3 6.8e-48 163.1 3.3 1.8 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|330507603|ref|YP_004384031.1| - 1.1e-40 138.1 0.0 2.5e-40 137.0 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|330507603|ref|YP_004384031.1| - 1.6e-28 98.7 0.0 3.7e-28 97.5 0.0 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|330507603|ref|YP_004384031.1| - 8.7e-14 51.7 0.2 5.5e-13 49.1 0.0 2.4 2 1 0 2 2 2 1 MutS domain II AAA_14 PF13173.1 gi|330507603|ref|YP_004384031.1| - 0.0017 18.2 0.0 0.011 15.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|330507603|ref|YP_004384031.1| - 0.01 16.1 0.1 0.21 11.8 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.1 gi|330507603|ref|YP_004384031.1| - 0.032 13.7 0.0 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|330507603|ref|YP_004384031.1| - 0.063 13.5 0.1 0.8 10.0 0.0 2.8 2 1 0 3 3 3 0 ABC transporter AAA_22 PF13401.1 gi|330507603|ref|YP_004384031.1| - 0.097 12.8 0.0 0.63 10.1 0.0 2.4 1 1 1 2 2 2 0 AAA domain MutL_C PF08676.6 gi|330507604|ref|YP_004384032.1| - 1.7e-35 121.7 0.0 3e-35 120.9 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|330507604|ref|YP_004384032.1| - 5e-32 109.8 0.0 9e-32 109.0 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|330507604|ref|YP_004384032.1| - 4.2e-14 52.3 0.1 7.2e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|330507604|ref|YP_004384032.1| - 3.2e-13 49.3 0.1 5.9e-13 48.5 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AIRS_C PF02769.17 gi|330507605|ref|YP_004384033.1| - 6.8e-18 65.1 0.8 1.2e-17 64.3 0.5 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|330507605|ref|YP_004384033.1| - 4.2e-14 52.5 0.5 1.4e-13 50.8 0.1 2.1 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain TrmB PF01978.14 gi|330507606|ref|YP_004384034.1| - 0.0033 17.1 0.1 0.0087 15.7 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|330507606|ref|YP_004384034.1| - 0.018 14.6 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 MarR family PadR PF03551.9 gi|330507606|ref|YP_004384034.1| - 0.023 14.4 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.12 gi|330507606|ref|YP_004384034.1| - 0.032 13.7 0.1 0.042 13.3 0.1 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit DUF387 PF04079.11 gi|330507606|ref|YP_004384034.1| - 0.04 13.2 0.1 0.087 12.1 0.0 1.7 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) RuvA_C PF07499.8 gi|330507606|ref|YP_004384034.1| - 0.13 12.4 0.0 3.5 7.8 0.0 2.5 2 0 0 2 2 2 0 RuvA, C-terminal domain TFIIE_alpha PF02002.12 gi|330507607|ref|YP_004384035.1| - 3e-20 71.6 0.9 5e-20 70.9 0.6 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_9 PF08221.6 gi|330507607|ref|YP_004384035.1| - 0.0049 16.6 0.0 0.0084 15.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_IclR PF09339.5 gi|330507607|ref|YP_004384035.1| - 0.0072 15.8 0.2 0.13 11.8 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain RepL PF05732.6 gi|330507607|ref|YP_004384035.1| - 0.0081 15.3 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) TF_Zn_Ribbon PF08271.7 gi|330507607|ref|YP_004384035.1| - 0.012 14.9 0.6 0.027 13.7 0.4 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding Rep_fac-A_C PF08646.5 gi|330507607|ref|YP_004384035.1| - 0.016 14.8 0.2 0.026 14.2 0.1 1.3 1 0 0 1 1 1 0 Replication factor-A C terminal domain HTH_11 PF08279.7 gi|330507607|ref|YP_004384035.1| - 0.022 14.3 0.2 0.054 13.1 0.0 1.7 2 0 0 2 2 2 0 HTH domain TniQ PF06527.6 gi|330507607|ref|YP_004384035.1| - 0.028 14.6 0.1 0.082 13.1 0.0 1.7 2 0 0 2 2 2 0 TniQ HTH_36 PF13730.1 gi|330507607|ref|YP_004384035.1| - 0.041 14.0 0.2 0.12 12.5 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|330507607|ref|YP_004384035.1| - 0.046 13.2 0.1 0.099 12.1 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_24 PF13412.1 gi|330507607|ref|YP_004384035.1| - 0.053 12.9 1.9 0.17 11.3 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Rad50_zn_hook PF04423.9 gi|330507607|ref|YP_004384035.1| - 0.065 12.7 0.4 1.3 8.5 0.0 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif GntR PF00392.16 gi|330507607|ref|YP_004384035.1| - 0.068 12.6 0.5 0.14 11.5 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family YdjO PF14169.1 gi|330507607|ref|YP_004384035.1| - 0.099 12.1 0.1 0.26 10.7 0.0 1.8 1 0 0 1 1 1 0 Cold-inducible protein YdjO HTH_23 PF13384.1 gi|330507607|ref|YP_004384035.1| - 0.1 12.2 0.1 0.31 10.7 0.0 1.9 1 1 0 1 1 1 0 Homeodomain-like domain HTH_20 PF12840.2 gi|330507607|ref|YP_004384035.1| - 0.13 12.0 1.0 0.46 10.3 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.14 gi|330507608|ref|YP_004384036.1| - 0.022 14.4 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2551 PF10826.3 gi|330507609|ref|YP_004384037.1| - 6.1e-25 86.9 0.3 7.1e-25 86.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) LIM PF00412.17 gi|330507610|ref|YP_004384038.1| - 8e-06 25.8 3.0 1.5e-05 24.9 2.1 1.5 1 0 0 1 1 1 1 LIM domain HTH_24 PF13412.1 gi|330507610|ref|YP_004384038.1| - 2.8e-05 23.4 0.0 4.9e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|330507610|ref|YP_004384038.1| - 0.0027 17.1 0.0 0.0046 16.4 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain zf-dskA_traR PF01258.12 gi|330507610|ref|YP_004384038.1| - 0.0089 15.7 2.2 0.028 14.1 1.5 1.8 1 1 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger FeoC PF09012.5 gi|330507610|ref|YP_004384038.1| - 0.0097 15.6 1.4 0.027 14.1 0.0 2.2 2 0 0 2 2 2 1 FeoC like transcriptional regulator TrmB PF01978.14 gi|330507610|ref|YP_004384038.1| - 0.013 15.1 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.11 gi|330507610|ref|YP_004384038.1| - 0.025 13.8 0.0 0.041 13.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DUF3330 PF11809.3 gi|330507610|ref|YP_004384038.1| - 0.037 13.8 1.9 0.069 13.0 1.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3330) DZR PF12773.2 gi|330507610|ref|YP_004384038.1| - 0.041 13.7 3.8 0.093 12.5 2.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|330507610|ref|YP_004384038.1| - 0.098 12.1 3.8 0.26 10.8 2.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain HTH_DeoR PF08220.7 gi|330507610|ref|YP_004384038.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.4 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF4423 PF14394.1 gi|330507610|ref|YP_004384038.1| - 0.12 11.8 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_20 PF12840.2 gi|330507610|ref|YP_004384038.1| - 0.13 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1272 PF06906.6 gi|330507610|ref|YP_004384038.1| - 0.14 12.0 4.0 0.24 11.2 2.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.1 gi|330507610|ref|YP_004384038.1| - 3.4 6.9 5.3 10 5.4 3.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|330507611|ref|YP_004384039.1| - 3.4e-24 84.2 0.0 1e-23 82.7 0.0 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330507611|ref|YP_004384039.1| - 2.8e-11 43.2 2.2 4e-11 42.7 1.6 1.2 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|330507611|ref|YP_004384039.1| - 0.042 13.6 0.8 0.1 12.4 0.6 1.6 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|330507611|ref|YP_004384039.1| - 0.045 13.4 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1610 PF07754.6 gi|330507611|ref|YP_004384039.1| - 0.072 13.2 5.4 1.8 8.7 4.3 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1610) DUF1646 PF07854.7 gi|330507612|ref|YP_004384040.1| - 4.2e-11 42.5 3.5 4.9e-11 42.3 2.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) SBF PF01758.11 gi|330507612|ref|YP_004384040.1| - 0.033 13.6 2.8 0.038 13.3 1.9 1.3 1 0 0 1 1 1 0 Sodium Bile acid symporter family Claudin_2 PF13903.1 gi|330507612|ref|YP_004384040.1| - 0.42 10.2 8.1 2.4 7.8 5.6 1.9 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Oxidored_q1 PF00361.15 gi|330507613|ref|YP_004384041.1| - 5.1e-45 153.8 27.2 1.6e-44 152.1 18.9 1.9 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|330507613|ref|YP_004384041.1| - 0.00098 18.3 6.9 0.00098 18.3 4.8 2.5 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein UPF0697 PF15117.1 gi|330507614|ref|YP_004384042.1| - 0.045 13.5 0.0 0.056 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0697 DUF2064 PF09837.4 gi|330507615|ref|YP_004384043.1| - 0.0019 17.7 13.0 0.71 9.5 0.1 5.9 6 1 0 6 6 6 2 Uncharacterized protein conserved in bacteria (DUF2064) DERM PF14704.1 gi|330507615|ref|YP_004384043.1| - 0.0058 16.6 0.5 0.3 11.0 0.1 3.3 3 1 0 3 3 3 1 Dermatopontin Oxidored_q1 PF00361.15 gi|330507616|ref|YP_004384044.1| - 3.1e-57 193.8 21.3 3.1e-57 193.8 14.7 2.4 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|330507616|ref|YP_004384044.1| - 0.00033 20.1 2.3 0.00033 20.1 1.6 2.5 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|330507617|ref|YP_004384045.1| - 2.2e-20 72.0 0.7 3.2e-20 71.5 0.5 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.4 gi|330507617|ref|YP_004384045.1| - 0.014 15.1 1.5 0.014 15.1 1.0 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) DUF4040 PF13244.1 gi|330507617|ref|YP_004384045.1| - 1.5 8.8 7.2 0.35 10.8 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4040) MNHE PF01899.11 gi|330507618|ref|YP_004384046.1| - 1.3e-32 112.6 2.0 1.5e-32 112.3 1.4 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.8 gi|330507619|ref|YP_004384047.1| - 1.9e-15 56.8 5.8 1.9e-15 56.8 4.0 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2651 PF10852.3 gi|330507619|ref|YP_004384047.1| - 1.8 9.0 9.3 11 6.4 6.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2651) DUF843 PF05814.6 gi|330507619|ref|YP_004384047.1| - 4.3 7.1 5.2 0.8 9.5 0.2 1.9 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) PASTA PF03793.14 gi|330507621|ref|YP_004384049.1| - 0.057 13.0 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 PASTA domain NikR_C PF08753.6 gi|330507624|ref|YP_004384052.1| - 2e-31 107.7 3.8 2.7e-31 107.2 2.6 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|330507624|ref|YP_004384052.1| - 5e-09 35.6 0.3 1.3e-08 34.3 0.1 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Fibrillarin PF01269.12 gi|330507625|ref|YP_004384053.1| - 1.2e-71 240.2 0.0 1.4e-71 240.0 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.7 gi|330507625|ref|YP_004384053.1| - 0.0057 15.5 0.0 0.0078 15.1 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_26 PF13659.1 gi|330507625|ref|YP_004384053.1| - 0.084 12.9 0.0 0.12 12.3 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Peptidase_S24 PF00717.18 gi|330507626|ref|YP_004384054.1| - 0.00033 20.2 0.1 0.0008 19.0 0.0 1.7 2 0 0 2 2 2 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|330507627|ref|YP_004384055.1| - 1.4e-11 44.0 0.0 2.2e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|330507627|ref|YP_004384055.1| - 1.6e-10 41.0 0.0 2.5e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|330507627|ref|YP_004384055.1| - 5.1e-07 29.2 0.1 8.5e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|330507627|ref|YP_004384055.1| - 8.2e-05 22.3 0.2 0.00017 21.3 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4539 PF15072.1 gi|330507627|ref|YP_004384055.1| - 0.05 13.3 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4539) ThiC PF01964.13 gi|330507630|ref|YP_004384058.1| - 1.2e-171 570.8 0.0 1.4e-171 570.7 0.0 1.0 1 0 0 1 1 1 1 ThiC family Amidohydro_4 PF13147.1 gi|330507630|ref|YP_004384058.1| - 0.00023 21.3 0.8 0.041 13.9 0.1 2.4 1 1 0 2 2 2 2 Amidohydrolase Lactamase_B PF00753.22 gi|330507631|ref|YP_004384059.1| - 2e-31 109.1 0.1 2.3e-31 108.9 0.1 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|330507631|ref|YP_004384059.1| - 5.7e-09 35.7 0.0 8.4e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|330507631|ref|YP_004384059.1| - 0.0083 15.8 0.0 0.017 14.8 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Aminotran_3 PF00202.16 gi|330507632|ref|YP_004384060.1| - 2.3e-102 342.3 0.0 2.7e-102 342.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.15 gi|330507632|ref|YP_004384060.1| - 0.0008 17.7 0.0 0.0012 17.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SERTA PF06031.8 gi|330507632|ref|YP_004384060.1| - 0.068 12.4 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 SERTA motif Aminotran_1_2 PF00155.16 gi|330507633|ref|YP_004384061.1| - 1.2e-46 159.3 0.0 1.4e-46 159.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|330507633|ref|YP_004384061.1| - 1.9e-06 26.8 0.0 0.00036 19.2 0.0 2.1 2 0 0 2 2 2 2 Allinase DUF3670 PF12419.3 gi|330507633|ref|YP_004384061.1| - 0.032 13.6 0.0 0.061 12.7 0.0 1.4 1 0 0 1 1 1 0 SNF2 Helicase protein AAA_18 PF13238.1 gi|330507634|ref|YP_004384062.1| - 4.7e-19 68.9 0.0 6e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|330507634|ref|YP_004384062.1| - 3.1e-11 44.1 0.0 6.1e-11 43.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|330507634|ref|YP_004384062.1| - 0.0005 19.7 0.1 0.001 18.7 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|330507634|ref|YP_004384062.1| - 0.0011 19.0 0.8 0.0017 18.3 0.2 1.7 1 1 1 2 2 2 1 AAA domain UPF0180 PF03698.8 gi|330507634|ref|YP_004384062.1| - 0.0039 17.0 0.1 0.13 12.1 0.0 2.2 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0180) CoaE PF01121.15 gi|330507634|ref|YP_004384062.1| - 0.0045 16.4 0.1 0.18 11.1 0.0 2.2 1 1 1 2 2 2 1 Dephospho-CoA kinase AAA PF00004.24 gi|330507634|ref|YP_004384062.1| - 0.0068 16.5 1.6 0.023 14.8 1.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|330507634|ref|YP_004384062.1| - 0.021 14.8 1.8 0.17 11.8 1.3 1.9 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|330507634|ref|YP_004384062.1| - 0.03 14.0 0.1 0.063 12.9 0.0 1.5 1 0 0 1 1 1 0 NTPase ArgK PF03308.11 gi|330507634|ref|YP_004384062.1| - 0.04 12.7 0.1 0.97 8.1 0.0 2.1 2 0 0 2 2 2 0 ArgK protein AAA_33 PF13671.1 gi|330507634|ref|YP_004384062.1| - 0.051 13.4 0.5 0.47 10.3 0.1 2.3 2 1 1 3 3 3 0 AAA domain AAA_5 PF07728.9 gi|330507634|ref|YP_004384062.1| - 0.08 12.6 0.0 0.35 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SKI PF01202.17 gi|330507634|ref|YP_004384062.1| - 0.11 12.3 0.1 14 5.5 0.0 2.4 2 1 0 2 2 2 0 Shikimate kinase AAA_22 PF13401.1 gi|330507634|ref|YP_004384062.1| - 0.12 12.5 1.1 0.23 11.5 0.7 1.8 1 1 0 1 1 1 0 AAA domain Poly_export PF02563.11 gi|330507634|ref|YP_004384062.1| - 0.12 12.1 0.0 0.34 10.7 0.0 1.7 2 0 0 2 2 2 0 Polysaccharide biosynthesis/export protein PRK PF00485.13 gi|330507634|ref|YP_004384062.1| - 0.14 11.7 0.0 3.6 7.1 0.0 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.9 gi|330507634|ref|YP_004384062.1| - 0.22 11.2 0.9 3.6 7.2 0.6 2.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Pribosyltran_N PF13793.1 gi|330507635|ref|YP_004384063.1| - 2.9e-18 65.6 0.0 5.5e-15 55.1 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|330507635|ref|YP_004384063.1| - 2.1e-16 59.7 0.3 4.5e-16 58.7 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|330507635|ref|YP_004384063.1| - 2e-08 34.2 0.4 3.4e-08 33.4 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|330507635|ref|YP_004384063.1| - 2.2e-06 27.0 0.1 3.5e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|330507635|ref|YP_004384063.1| - 0.00014 21.2 0.2 0.11 11.7 0.1 2.2 1 1 1 2 2 2 2 Phosphoribosyl transferase DUF1995 PF09353.5 gi|330507635|ref|YP_004384063.1| - 0.0044 16.6 0.0 0.0069 16.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1995) PmbA_TldD PF01523.11 gi|330507636|ref|YP_004384064.1| - 3.1e-62 210.5 0.1 3.8e-62 210.2 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PAC2 PF09754.4 gi|330507637|ref|YP_004384065.1| - 1.3e-52 178.7 0.1 1.6e-52 178.5 0.0 1.0 1 0 0 1 1 1 1 PAC2 family EIF_2_alpha PF07541.7 gi|330507638|ref|YP_004384066.1| - 7.1e-27 93.3 0.1 1.2e-26 92.6 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|330507638|ref|YP_004384066.1| - 8.8e-13 48.1 0.2 2.5e-12 46.7 0.0 1.7 2 0 0 2 2 2 1 S1 RNA binding domain HTH_27 PF13463.1 gi|330507638|ref|YP_004384066.1| - 0.034 14.4 0.0 0.75 10.1 0.0 2.7 2 1 0 2 2 2 0 Winged helix DNA-binding domain APP_E2 PF12925.2 gi|330507638|ref|YP_004384066.1| - 0.68 9.4 6.1 1.3 8.5 4.2 1.6 1 1 0 1 1 1 0 E2 domain of amyloid precursor protein Ribosomal_S27e PF01667.12 gi|330507639|ref|YP_004384067.1| - 3.9e-25 87.1 1.9 4.1e-25 87.0 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zinc_ribbon_6 PF14599.1 gi|330507639|ref|YP_004384067.1| - 0.00058 19.6 1.6 0.00073 19.2 1.1 1.1 1 0 0 1 1 1 1 Zinc-ribbon HypA PF01155.14 gi|330507639|ref|YP_004384067.1| - 0.0098 15.5 0.5 0.01 15.5 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF4206 PF13901.1 gi|330507639|ref|YP_004384067.1| - 0.021 14.3 0.8 0.024 14.1 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) Sgf11 PF08209.6 gi|330507639|ref|YP_004384067.1| - 0.024 13.9 2.4 0.18 11.1 0.0 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) C1_1 PF00130.17 gi|330507639|ref|YP_004384067.1| - 0.035 13.8 0.9 0.048 13.3 0.6 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-BED PF02892.10 gi|330507639|ref|YP_004384067.1| - 0.065 13.0 2.2 0.58 9.9 0.0 2.1 1 1 1 2 2 2 0 BED zinc finger DUF2180 PF09947.4 gi|330507639|ref|YP_004384067.1| - 0.084 12.6 0.7 0.1 12.3 0.5 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) Zn-ribbon_8 PF09723.5 gi|330507639|ref|YP_004384067.1| - 0.11 12.4 0.9 0.18 11.8 0.6 1.3 1 0 0 1 1 1 0 Zinc ribbon domain ZZ PF00569.12 gi|330507639|ref|YP_004384067.1| - 0.47 10.0 4.2 1.2 8.6 2.9 1.7 1 1 0 1 1 1 0 Zinc finger, ZZ type zf-trcl PF13451.1 gi|330507639|ref|YP_004384067.1| - 0.48 10.1 3.4 0.51 10.0 0.3 2.0 1 1 1 2 2 2 0 Probable zinc-binding domain TFIIS_C PF01096.13 gi|330507639|ref|YP_004384067.1| - 0.5 10.0 3.9 28 4.4 2.7 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zf-RanBP PF00641.13 gi|330507639|ref|YP_004384067.1| - 0.98 8.5 3.6 12 5.1 0.3 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zinc_ribbon_4 PF13717.1 gi|330507639|ref|YP_004384067.1| - 1.7 8.4 5.2 3.4 7.4 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.2 gi|330507639|ref|YP_004384067.1| - 2.7 7.6 5.2 1.8 8.2 0.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_5 PF13719.1 gi|330507639|ref|YP_004384067.1| - 3.3 7.3 5.6 3.7 7.1 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_L44 PF00935.14 gi|330507640|ref|YP_004384068.1| - 1.9e-26 91.8 3.5 2.6e-26 91.4 2.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 Zn_Tnp_IS1 PF03811.8 gi|330507640|ref|YP_004384068.1| - 0.076 12.5 4.0 3.4 7.2 0.1 2.4 2 0 0 2 2 2 0 InsA N-terminal domain C1_4 PF07975.7 gi|330507640|ref|YP_004384068.1| - 0.087 12.8 0.2 1.2 9.2 0.0 2.1 2 0 0 2 2 2 0 TFIIH C1-like domain Zn_Tnp_IS1595 PF12760.2 gi|330507640|ref|YP_004384068.1| - 0.53 10.1 3.9 6.2 6.7 0.1 2.3 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|330507640|ref|YP_004384068.1| - 0.84 9.6 4.2 6.5 6.7 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|330507640|ref|YP_004384068.1| - 0.89 9.9 5.0 9.1 6.7 0.7 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Tnp_zf-ribbon_2 PF13842.1 gi|330507640|ref|YP_004384068.1| - 1 9.8 4.5 12 6.4 0.1 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Ribosomal_L33 PF00471.15 gi|330507640|ref|YP_004384068.1| - 1.8 8.8 8.3 0.22 11.8 0.9 2.3 2 0 0 2 2 2 0 Ribosomal protein L33 Sld5 PF05916.6 gi|330507641|ref|YP_004384069.1| - 0.0042 17.3 0.5 0.012 15.8 0.1 1.9 2 1 0 2 2 2 1 GINS complex protein COG2 PF06148.6 gi|330507641|ref|YP_004384069.1| - 0.03 14.1 0.1 0.048 13.5 0.1 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 VirE PF05272.6 gi|330507641|ref|YP_004384069.1| - 0.036 13.5 0.1 0.053 12.9 0.0 1.1 1 0 0 1 1 1 0 Virulence-associated protein E DNA_primase_S PF01896.14 gi|330507642|ref|YP_004384070.1| - 4.9e-19 68.5 0.0 1.1e-18 67.3 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit DNA_pol_lambd_f PF10391.4 gi|330507642|ref|YP_004384070.1| - 0.02 14.4 0.0 0.056 13.0 0.0 1.8 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda CN_hydrolase PF00795.17 gi|330507643|ref|YP_004384071.1| - 1.1e-16 60.6 0.0 1.5e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF1081 PF06448.6 gi|330507643|ref|YP_004384071.1| - 0.17 11.7 0.0 0.27 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1081) Ion_trans PF00520.26 gi|330507644|ref|YP_004384072.1| - 2e-24 85.9 3.9 2e-24 85.9 2.7 1.7 2 0 0 2 2 2 1 Ion transport protein Ion_trans_2 PF07885.11 gi|330507644|ref|YP_004384072.1| - 1.9e-14 53.1 3.1 1.9e-14 53.1 2.2 2.1 2 1 0 2 2 2 1 Ion channel Sgf11 PF08209.6 gi|330507644|ref|YP_004384072.1| - 0.13 11.5 0.1 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) Peripla_BP_2 PF01497.13 gi|330507646|ref|YP_004384074.1| - 2.5e-28 98.8 0.0 3.9e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein DMRL_synthase PF00885.14 gi|330507648|ref|YP_004384076.1| - 1.5e-20 73.2 0.2 1.8e-20 73.0 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF2859 PF11072.3 gi|330507648|ref|YP_004384076.1| - 0.0048 16.3 0.2 0.39 10.1 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2859) HATPase_c PF02518.21 gi|330507649|ref|YP_004384077.1| - 1.8e-31 108.0 0.0 3.1e-31 107.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|330507649|ref|YP_004384077.1| - 2.7e-28 98.1 0.2 6.9e-28 96.9 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|330507649|ref|YP_004384077.1| - 3.9e-23 81.7 0.0 4.4e-16 59.1 0.0 2.4 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|330507649|ref|YP_004384077.1| - 6.8e-23 80.4 0.0 2e-22 78.9 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|330507649|ref|YP_004384077.1| - 9.6e-22 77.1 0.0 3.4e-10 39.9 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|330507649|ref|YP_004384077.1| - 6.2e-13 48.6 0.0 1.3e-09 37.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|330507649|ref|YP_004384077.1| - 7e-13 48.3 0.0 3.1e-08 33.3 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|330507649|ref|YP_004384077.1| - 8.2e-08 31.8 0.0 7e-05 22.5 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.1 gi|330507649|ref|YP_004384077.1| - 3.6e-05 23.9 0.0 0.11 12.7 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|330507649|ref|YP_004384077.1| - 0.00046 20.1 0.0 1.8 8.5 0.0 3.0 2 1 0 2 2 2 2 PAS fold PAS_11 PF14598.1 gi|330507649|ref|YP_004384077.1| - 0.00067 19.5 0.0 0.0015 18.4 0.0 1.5 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|330507649|ref|YP_004384077.1| - 0.0062 16.2 0.0 0.064 12.9 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Rubrerythrin PF02915.12 gi|330507651|ref|YP_004384079.1| - 1.6e-21 77.0 14.5 8.4e-21 74.7 10.1 1.8 1 1 0 1 1 1 1 Rubrerythrin Rubredoxin PF00301.15 gi|330507651|ref|YP_004384079.1| - 0.012 15.5 3.5 0.34 10.8 2.4 2.3 1 1 0 1 1 1 0 Rubredoxin DZR PF12773.2 gi|330507651|ref|YP_004384079.1| - 0.033 14.0 0.7 0.057 13.2 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|330507651|ref|YP_004384079.1| - 0.043 13.4 0.6 5.6 6.7 0.0 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-ISL3 PF14690.1 gi|330507651|ref|YP_004384079.1| - 0.24 11.4 4.3 2.4 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_ligase_ZBD PF03119.11 gi|330507651|ref|YP_004384079.1| - 0.53 10.0 5.5 5.8 6.7 0.2 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Cys_rich_CPCC PF14206.1 gi|330507651|ref|YP_004384079.1| - 0.58 9.7 4.6 0.4 10.2 1.2 2.2 2 1 1 3 3 3 0 Cysteine-rich CPCC zf-C2H2_4 PF13894.1 gi|330507651|ref|YP_004384079.1| - 1.3 9.5 3.5 17 6.0 0.0 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|330507651|ref|YP_004384079.1| - 1.4 9.3 6.3 2.6 8.4 0.6 2.5 1 1 1 2 2 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|330507651|ref|YP_004384079.1| - 1.6 8.0 5.3 11 5.3 3.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|330507651|ref|YP_004384079.1| - 2.8 8.4 5.5 5.3 7.5 0.1 3.0 3 0 0 3 3 3 0 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.7 gi|330507651|ref|YP_004384079.1| - 5.5 6.3 7.4 36 3.7 0.7 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|330507651|ref|YP_004384079.1| - 5.5 7.1 9.0 3.4 7.8 0.8 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Hjc PF01870.13 gi|330507652|ref|YP_004384080.1| - 0.032 13.8 0.0 0.28 10.7 0.0 2.0 1 1 1 2 2 2 0 Archaeal holliday junction resolvase (hjc) Thymidylat_synt PF00303.14 gi|330507653|ref|YP_004384081.1| - 2.7e-32 111.8 0.0 4.9e-30 104.4 0.0 2.0 1 1 1 2 2 2 2 Thymidylate synthase Pentapeptide_3 PF13576.1 gi|330507654|ref|YP_004384082.1| - 1.5e-14 53.5 24.4 1.5e-07 31.2 8.5 3.8 2 1 2 4 4 4 3 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|330507654|ref|YP_004384082.1| - 0.0033 17.1 8.7 0.017 14.9 5.8 2.3 1 1 0 1 1 1 1 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|330507654|ref|YP_004384082.1| - 0.2 10.9 4.9 0.73 9.1 1.0 3.5 3 2 0 3 3 3 0 Pentapeptide repeats (8 copies) Ion_trans_2 PF07885.11 gi|330507654|ref|YP_004384082.1| - 6 6.6 7.1 41 3.9 4.7 2.4 1 1 0 1 1 1 0 Ion channel HATPase_c PF02518.21 gi|330507655|ref|YP_004384083.1| - 7e-33 112.6 0.3 1.5e-32 111.5 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|330507655|ref|YP_004384083.1| - 1e-27 96.5 0.0 2.4e-10 40.6 0.0 3.7 3 0 0 3 3 3 3 PAS domain Response_reg PF00072.19 gi|330507655|ref|YP_004384083.1| - 1.4e-27 95.9 1.1 2.9e-27 94.9 0.4 1.9 2 0 0 2 2 2 1 Response regulator receiver domain GAF_2 PF13185.1 gi|330507655|ref|YP_004384083.1| - 6.6e-24 85.0 0.0 1.1e-14 55.1 0.0 2.7 2 0 0 2 2 2 2 GAF domain HisKA PF00512.20 gi|330507655|ref|YP_004384083.1| - 2.3e-22 78.7 0.6 8.4e-22 76.9 0.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|330507655|ref|YP_004384083.1| - 1e-20 73.8 0.0 1.2e-11 44.6 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|330507655|ref|YP_004384083.1| - 7.9e-15 54.7 0.0 3.3e-13 49.5 0.0 3.1 3 0 0 3 3 3 1 PAS fold PAS PF00989.19 gi|330507655|ref|YP_004384083.1| - 8.9e-10 38.3 0.0 0.00029 20.6 0.0 3.8 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.1 gi|330507655|ref|YP_004384083.1| - 3e-08 33.8 0.0 0.024 14.7 0.0 3.9 4 0 0 4 4 4 2 GAF domain GAF PF01590.21 gi|330507655|ref|YP_004384083.1| - 4e-07 30.2 0.0 1.6e-05 25.1 0.0 2.8 3 0 0 3 3 3 1 GAF domain PAS_8 PF13188.1 gi|330507655|ref|YP_004384083.1| - 0.0002 21.0 0.0 0.0022 17.7 0.0 2.6 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|330507655|ref|YP_004384083.1| - 0.00059 19.4 0.1 0.0013 18.4 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|330507655|ref|YP_004384083.1| - 0.0079 16.1 0.0 0.029 14.3 0.0 1.9 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.1 gi|330507655|ref|YP_004384083.1| - 0.017 14.8 0.0 0.052 13.2 0.0 1.8 1 0 0 1 1 1 0 GHKL domain MarR_2 PF12802.2 gi|330507656|ref|YP_004384084.1| - 3.3e-05 23.4 0.0 6.7e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|330507656|ref|YP_004384084.1| - 0.00031 20.3 0.0 0.00092 18.8 0.0 1.8 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|330507656|ref|YP_004384084.1| - 0.0021 17.7 0.0 0.0046 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|330507656|ref|YP_004384084.1| - 0.0023 17.9 0.0 0.0049 16.9 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.17 gi|330507656|ref|YP_004384084.1| - 0.0024 17.5 0.0 0.005 16.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|330507656|ref|YP_004384084.1| - 0.0047 16.4 1.2 0.02 14.4 0.0 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|330507656|ref|YP_004384084.1| - 0.014 15.0 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|330507656|ref|YP_004384084.1| - 0.018 14.4 0.1 0.049 13.0 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|330507656|ref|YP_004384084.1| - 0.03 14.1 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|330507656|ref|YP_004384084.1| - 0.051 13.9 0.0 0.34 11.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain GntR PF00392.16 gi|330507656|ref|YP_004384084.1| - 0.084 12.3 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|330507656|ref|YP_004384084.1| - 0.11 12.0 0.1 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain RepL PF05732.6 gi|330507656|ref|YP_004384084.1| - 0.14 11.3 0.0 0.26 10.4 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) MMPL PF03176.10 gi|330507657|ref|YP_004384085.1| - 7.3e-48 162.9 18.4 5.5e-24 84.4 7.7 2.4 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|330507657|ref|YP_004384085.1| - 5.7e-11 42.0 18.2 2.1e-06 27.3 3.0 2.7 2 1 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.14 gi|330507657|ref|YP_004384085.1| - 7e-11 40.3 22.2 3e-06 24.9 2.3 3.0 3 0 0 3 3 3 3 AcrB/AcrD/AcrF family SecD_SecF PF02355.11 gi|330507657|ref|YP_004384085.1| - 4.2e-09 35.8 7.6 4.2e-09 35.8 5.3 2.6 2 1 0 2 2 2 1 Protein export membrane protein Patched PF02460.13 gi|330507657|ref|YP_004384085.1| - 0.00079 17.4 27.3 0.024 12.5 2.2 3.0 3 0 0 3 3 3 2 Patched family Glyco_tranf_2_3 PF13641.1 gi|330507657|ref|YP_004384085.1| - 0.16 11.7 0.1 3 7.5 0.0 2.2 2 0 0 2 2 2 0 Glycosyltransferase like family 2 HTH_IclR PF09339.5 gi|330507658|ref|YP_004384086.1| - 0.0064 16.0 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|330507658|ref|YP_004384086.1| - 0.02 14.2 0.0 0.039 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TPR_MLP1_2 PF07926.7 gi|330507658|ref|YP_004384086.1| - 0.042 13.6 0.3 0.051 13.3 0.2 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Phage_GP20 PF06810.6 gi|330507658|ref|YP_004384086.1| - 0.061 12.7 1.0 0.1 12.0 0.7 1.3 1 0 0 1 1 1 0 Phage minor structural protein GP20 MarR_2 PF12802.2 gi|330507658|ref|YP_004384086.1| - 0.068 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 MarR family FliD_N PF02465.13 gi|330507658|ref|YP_004384086.1| - 0.15 12.4 1.5 0.19 12.0 0.1 1.9 2 1 1 3 3 3 0 Flagellar hook-associated protein 2 N-terminus MerR_2 PF13591.1 gi|330507658|ref|YP_004384086.1| - 0.16 11.5 1.2 0.35 10.4 0.5 1.8 2 0 0 2 2 2 0 MerR HTH family regulatory protein Hydrolase PF00702.21 gi|330507659|ref|YP_004384087.1| - 1.1e-13 52.0 0.1 3.2e-13 50.6 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|330507659|ref|YP_004384087.1| - 2.3e-07 31.1 0.0 2.8e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|330507659|ref|YP_004384087.1| - 0.02 14.5 0.0 0.082 12.4 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|330507659|ref|YP_004384087.1| - 0.13 12.4 0.0 0.42 10.8 0.0 1.8 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Ribosomal_S10 PF00338.17 gi|330507662|ref|YP_004384090.1| - 3.4e-29 100.5 0.0 3.7e-29 100.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|330507663|ref|YP_004384091.1| - 3.4e-55 186.3 0.0 4.8e-55 185.9 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|330507663|ref|YP_004384091.1| - 4.7e-31 106.8 0.4 2.4e-30 104.6 0.1 2.3 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|330507663|ref|YP_004384091.1| - 1.5e-18 66.6 1.3 6.5e-18 64.6 0.2 2.6 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|330507663|ref|YP_004384091.1| - 1.4e-05 24.9 0.0 3.6e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|330507663|ref|YP_004384091.1| - 0.00017 21.1 0.2 0.00039 20.0 0.1 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|330507663|ref|YP_004384091.1| - 0.00054 20.4 0.0 0.017 15.5 0.0 2.7 2 1 0 2 2 2 1 Miro-like protein Gtr1_RagA PF04670.7 gi|330507663|ref|YP_004384091.1| - 0.012 14.7 0.0 0.058 12.5 0.0 1.9 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region GTP_EFTU PF00009.22 gi|330507664|ref|YP_004384092.1| - 2.4e-57 193.4 0.2 4e-57 192.6 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|330507664|ref|YP_004384092.1| - 7.9e-29 99.6 0.0 5.5e-28 96.9 0.0 2.6 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|330507664|ref|YP_004384092.1| - 5.7e-25 86.9 1.6 8.3e-25 86.4 0.4 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|330507664|ref|YP_004384092.1| - 1.3e-24 85.8 0.1 9.3e-24 83.1 0.0 2.4 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|330507664|ref|YP_004384092.1| - 2.3e-15 56.4 1.8 8.5e-15 54.6 1.2 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|330507664|ref|YP_004384092.1| - 0.00029 20.7 0.0 0.00063 19.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|330507664|ref|YP_004384092.1| - 0.04 13.3 0.0 0.089 12.1 0.0 1.5 1 0 0 1 1 1 0 Ras family AA_kinase PF00696.23 gi|330507665|ref|YP_004384093.1| - 1.6e-45 155.5 1.4 2.7e-45 154.8 0.0 1.9 2 1 1 3 3 3 1 Amino acid kinase family ACT PF01842.20 gi|330507665|ref|YP_004384093.1| - 1.4e-24 85.1 0.9 5.1e-11 41.8 0.1 2.9 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|330507665|ref|YP_004384093.1| - 1.5e-22 78.9 2.0 4.3e-10 38.9 0.0 3.0 3 0 0 3 3 3 2 ACT domain LytR_C PF13399.1 gi|330507665|ref|YP_004384093.1| - 3.3e-05 24.1 0.4 0.28 11.5 0.0 2.5 1 1 1 2 2 2 2 LytR cell envelope-related transcriptional attenuator ACT_6 PF13740.1 gi|330507665|ref|YP_004384093.1| - 0.03 14.0 0.3 12 5.7 0.0 2.6 2 0 0 2 2 2 0 ACT domain CPSase_L_chain PF00289.17 gi|330507665|ref|YP_004384093.1| - 0.037 14.1 1.3 7.2 6.7 0.1 2.4 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Nitro_FeMo-Co PF02579.12 gi|330507665|ref|YP_004384093.1| - 0.052 13.6 2.1 3 7.9 0.2 2.9 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor AIRS_C PF02769.17 gi|330507666|ref|YP_004384094.1| - 1.1e-21 77.3 0.0 2e-21 76.5 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|330507666|ref|YP_004384094.1| - 4.8e-17 61.9 1.2 1.2e-16 60.7 0.5 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain CbiA PF01656.18 gi|330507667|ref|YP_004384095.1| - 6.3e-34 117.0 0.1 2.7e-33 115.0 0.0 1.8 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|330507667|ref|YP_004384095.1| - 4.6e-10 39.0 0.6 1.4e-08 34.1 0.1 2.4 1 1 1 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|330507667|ref|YP_004384095.1| - 5.3e-07 29.7 0.0 2.3e-05 24.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|330507667|ref|YP_004384095.1| - 5.6e-05 22.4 0.1 0.00046 19.4 0.1 2.1 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|330507667|ref|YP_004384095.1| - 0.00039 19.8 0.0 0.019 14.3 0.1 2.1 2 0 0 2 2 2 1 YhjQ protein AAA_17 PF13207.1 gi|330507667|ref|YP_004384095.1| - 0.00041 21.1 0.0 0.00092 20.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|330507667|ref|YP_004384095.1| - 0.0011 18.4 0.3 0.0043 16.5 0.1 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|330507667|ref|YP_004384095.1| - 0.0018 18.5 0.0 0.0031 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|330507667|ref|YP_004384095.1| - 0.003 16.3 0.2 0.0074 15.0 0.0 1.8 2 0 0 2 2 2 1 ArgK protein MobB PF03205.9 gi|330507667|ref|YP_004384095.1| - 0.0033 17.1 0.1 0.01 15.5 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|330507667|ref|YP_004384095.1| - 0.0038 16.8 0.1 0.012 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|330507667|ref|YP_004384095.1| - 0.004 16.6 0.3 0.0096 15.3 0.1 1.6 2 0 0 2 2 2 1 AAA-like domain NTPase_1 PF03266.10 gi|330507667|ref|YP_004384095.1| - 0.0077 15.9 0.2 0.026 14.2 0.0 1.9 2 0 0 2 2 2 1 NTPase DUF87 PF01935.12 gi|330507667|ref|YP_004384095.1| - 0.012 15.4 0.5 0.06 13.1 0.1 2.2 3 0 0 3 3 3 0 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|330507667|ref|YP_004384095.1| - 0.013 15.4 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_26 PF13500.1 gi|330507667|ref|YP_004384095.1| - 0.018 14.6 0.2 0.27 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|330507667|ref|YP_004384095.1| - 0.02 14.5 0.1 0.034 13.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|330507667|ref|YP_004384095.1| - 0.026 14.4 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|330507667|ref|YP_004384095.1| - 0.039 13.3 0.1 0.076 12.4 0.0 1.5 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_30 PF13604.1 gi|330507667|ref|YP_004384095.1| - 0.044 13.3 0.1 0.089 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|330507667|ref|YP_004384095.1| - 0.044 13.2 0.1 0.069 12.6 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|330507667|ref|YP_004384095.1| - 0.048 13.7 0.0 0.27 11.3 0.0 2.1 3 0 0 3 3 2 0 AAA domain ATP_bind_1 PF03029.12 gi|330507667|ref|YP_004384095.1| - 0.052 13.0 0.1 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|330507667|ref|YP_004384095.1| - 0.066 12.6 0.1 0.89 8.9 0.1 2.2 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.22 gi|330507667|ref|YP_004384095.1| - 0.08 12.3 0.1 2.3 7.6 0.0 2.4 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain NB-ARC PF00931.17 gi|330507667|ref|YP_004384095.1| - 0.084 11.7 0.6 0.15 10.8 0.4 1.4 1 0 0 1 1 1 0 NB-ARC domain Thymidylate_kin PF02223.12 gi|330507667|ref|YP_004384095.1| - 0.11 11.8 0.0 0.28 10.5 0.0 1.6 2 0 0 2 2 2 0 Thymidylate kinase ABC_tran PF00005.22 gi|330507667|ref|YP_004384095.1| - 0.11 12.7 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter MipZ PF09140.6 gi|330507667|ref|YP_004384095.1| - 0.15 11.1 0.2 0.39 9.7 0.0 1.7 2 0 0 2 2 2 0 ATPase MipZ KTI12 PF08433.5 gi|330507667|ref|YP_004384095.1| - 0.15 11.2 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Ribonuc_red_lgC PF02867.10 gi|330507668|ref|YP_004384096.1| - 3.5e-150 501.1 0.0 3.3e-106 355.9 0.0 2.6 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|330507668|ref|YP_004384096.1| - 3.9e-24 84.2 0.0 1.1e-23 82.7 0.0 1.9 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|330507668|ref|YP_004384096.1| - 7.1e-22 77.6 2.6 1.9e-21 76.2 1.8 1.8 1 0 0 1 1 1 1 ATP cone domain NRDD PF13597.1 gi|330507668|ref|YP_004384096.1| - 0.0012 17.0 0.0 0.0018 16.4 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DNA_alkylation PF08713.6 gi|330507669|ref|YP_004384097.1| - 9e-58 195.2 0.1 1e-57 195.0 0.1 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme YvbH_ext PF11724.3 gi|330507669|ref|YP_004384097.1| - 0.082 12.6 0.6 0.37 10.5 0.1 2.3 2 0 0 2 2 2 0 YvbH-like oligomerisation region Synaptonemal_3 PF15191.1 gi|330507670|ref|YP_004384098.1| - 0.018 14.7 0.5 0.021 14.5 0.3 1.3 1 1 0 1 1 1 0 Synaptonemal complex central element protein 3 DDE_Tnp_1 PF01609.16 gi|330507671|ref|YP_004384099.1| - 9.5e-23 80.8 0.0 1.4e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|330507671|ref|YP_004384099.1| - 0.0076 16.4 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|330507671|ref|YP_004384099.1| - 0.011 14.7 0.3 0.017 14.1 0.2 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Peptidase_M50 PF02163.17 gi|330507672|ref|YP_004384100.1| - 3.2e-16 58.8 8.7 4e-16 58.5 4.8 2.0 1 1 0 1 1 1 1 Peptidase family M50 PepSY_TM PF03929.11 gi|330507672|ref|YP_004384100.1| - 2.8 8.5 0.0 2.8 8.5 0.0 4.1 4 1 0 4 4 4 0 PepSY-associated TM helix Glyco_trans_1_3 PF13528.1 gi|330507674|ref|YP_004384102.1| - 5.7e-16 58.5 0.0 5.6e-07 29.0 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|330507674|ref|YP_004384102.1| - 8.3e-05 22.3 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.15 gi|330507674|ref|YP_004384102.1| - 0.0027 17.4 0.0 0.0064 16.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_transf_4 PF13439.1 gi|330507674|ref|YP_004384102.1| - 0.0059 16.3 0.0 0.032 13.9 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 GFO_IDH_MocA PF01408.17 gi|330507674|ref|YP_004384102.1| - 0.046 14.2 0.0 0.59 10.6 0.0 2.4 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Glyco_trans_4_4 PF13579.1 gi|330507674|ref|YP_004384102.1| - 0.046 13.8 0.0 0.077 13.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DUF619 PF04768.8 gi|330507674|ref|YP_004384102.1| - 0.057 12.8 0.1 8.3 5.7 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF619) Hist_deacetyl PF00850.14 gi|330507676|ref|YP_004384104.1| - 7.3e-65 219.2 0.1 4.8e-64 216.5 0.1 1.9 1 1 1 2 2 2 1 Histone deacetylase domain Hydantoinase_A PF01968.13 gi|330507677|ref|YP_004384105.1| - 4.5e-57 193.3 12.2 1.7e-54 184.9 3.6 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|330507677|ref|YP_004384105.1| - 7.6e-36 123.2 4.5 2e-33 115.3 0.5 3.0 3 1 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|330507677|ref|YP_004384105.1| - 0.00016 20.1 6.0 0.018 13.3 0.1 2.6 3 0 0 3 3 3 2 MutL protein FtsA PF14450.1 gi|330507677|ref|YP_004384105.1| - 0.0039 17.0 3.6 0.96 9.2 0.1 3.4 3 1 0 3 3 3 2 Cell division protein FtsA BcrAD_BadFG PF01869.15 gi|330507677|ref|YP_004384105.1| - 0.0048 16.2 8.1 0.11 11.7 1.7 3.3 2 2 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family DDR PF08841.5 gi|330507677|ref|YP_004384105.1| - 0.007 15.2 2.1 0.014 14.1 0.2 2.2 2 0 0 2 2 2 1 Diol dehydratase reactivase ATPase-like domain Ppx-GppA PF02541.11 gi|330507677|ref|YP_004384105.1| - 0.0075 15.5 1.7 0.1 11.7 0.0 2.7 3 0 0 3 3 3 1 Ppx/GppA phosphatase family StbA PF06406.6 gi|330507677|ref|YP_004384105.1| - 0.14 11.0 3.2 0.75 8.6 0.1 2.6 3 0 0 3 3 3 0 StbA protein MreB_Mbl PF06723.8 gi|330507677|ref|YP_004384105.1| - 1.6 7.2 7.9 0.15 10.5 0.2 2.6 3 0 0 3 3 3 0 MreB/Mbl protein MFS_1 PF07690.11 gi|330507678|ref|YP_004384106.1| - 1.8e-17 63.1 19.3 2.1e-17 62.8 13.4 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|330507678|ref|YP_004384106.1| - 0.012 13.7 3.0 0.016 13.3 2.1 1.2 1 0 0 1 1 1 0 Transmembrane secretion effector DUF2484 PF10658.4 gi|330507678|ref|YP_004384106.1| - 9.6 6.4 9.1 0.78 9.9 1.7 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2484) SSF PF00474.12 gi|330507679|ref|YP_004384107.1| - 2e-46 158.4 32.7 2.8e-46 157.9 22.7 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF1673 PF07895.6 gi|330507679|ref|YP_004384107.1| - 7 6.1 16.0 0.043 13.3 0.5 3.2 2 2 2 4 4 4 0 Protein of unknown function (DUF1673) MC1 PF05854.6 gi|330507680|ref|YP_004384108.1| - 6.4e-43 144.6 0.6 7.1e-43 144.5 0.4 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 tRNA-synt_2 PF00152.15 gi|330507681|ref|YP_004384109.1| - 2.3e-87 292.8 0.0 3.1e-87 292.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|330507681|ref|YP_004384109.1| - 6.9e-12 45.0 0.0 1.3e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|330507681|ref|YP_004384109.1| - 0.00073 18.8 0.1 0.085 12.0 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) DUF835 PF05763.7 gi|330507683|ref|YP_004384111.1| - 1.5e-35 121.7 0.1 8.2e-22 77.2 0.0 2.9 3 0 0 3 3 3 2 Protein of unknown function (DUF835) BofA PF07441.6 gi|330507684|ref|YP_004384112.1| - 0.00085 19.2 18.4 0.0012 18.7 12.8 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Cdc6_C PF09079.6 gi|330507685|ref|YP_004384113.1| - 1.2e-23 82.6 0.5 5.3e-23 80.5 0.3 2.2 2 0 0 2 2 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|330507685|ref|YP_004384113.1| - 3.4e-13 49.9 0.3 6e-11 42.6 0.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|330507685|ref|YP_004384113.1| - 6.5e-13 48.9 0.0 1.6e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|330507685|ref|YP_004384113.1| - 3.1e-10 40.3 0.0 1e-09 38.6 0.0 1.9 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|330507685|ref|YP_004384113.1| - 2.3e-07 30.7 0.1 5.3e-07 29.5 0.1 1.7 1 1 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|330507685|ref|YP_004384113.1| - 3.8e-06 26.6 0.0 8.6e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 NACHT domain KAP_NTPase PF07693.9 gi|330507685|ref|YP_004384113.1| - 3.1e-05 23.1 0.5 0.0038 16.2 0.0 2.3 1 1 1 2 2 2 1 KAP family P-loop domain DUF2075 PF09848.4 gi|330507685|ref|YP_004384113.1| - 0.00015 20.9 0.0 0.00021 20.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|330507685|ref|YP_004384113.1| - 0.00018 22.2 0.3 0.00044 21.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|330507685|ref|YP_004384113.1| - 0.00022 20.3 0.0 0.023 13.7 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|330507685|ref|YP_004384113.1| - 0.00035 20.0 0.1 0.00093 18.7 0.0 1.7 2 0 0 2 2 2 1 Sigma-54 interaction domain NB-ARC PF00931.17 gi|330507685|ref|YP_004384113.1| - 0.0004 19.3 0.0 0.00061 18.7 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DUF815 PF05673.8 gi|330507685|ref|YP_004384113.1| - 0.00068 18.6 0.0 0.0012 17.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DEAD PF00270.24 gi|330507685|ref|YP_004384113.1| - 0.00092 18.7 0.0 0.0044 16.5 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_24 PF13479.1 gi|330507685|ref|YP_004384113.1| - 0.0027 17.3 0.2 0.0027 17.3 0.1 1.9 3 0 0 3 3 2 1 AAA domain TIP49 PF06068.8 gi|330507685|ref|YP_004384113.1| - 0.004 15.9 0.0 0.016 13.9 0.0 1.9 2 0 0 2 2 2 1 TIP49 C-terminus AAA_25 PF13481.1 gi|330507685|ref|YP_004384113.1| - 0.0045 16.3 0.1 0.015 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|330507685|ref|YP_004384113.1| - 0.0052 17.0 0.1 0.014 15.6 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|330507685|ref|YP_004384113.1| - 0.0064 16.3 0.1 0.014 15.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|330507685|ref|YP_004384113.1| - 0.011 14.6 0.1 0.028 13.3 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein RNA_helicase PF00910.17 gi|330507685|ref|YP_004384113.1| - 0.014 15.5 0.0 0.043 13.9 0.0 1.8 2 0 0 2 2 1 0 RNA helicase DUF2498 PF10692.4 gi|330507685|ref|YP_004384113.1| - 0.016 14.8 0.0 0.045 13.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2498) AAA_2 PF07724.9 gi|330507685|ref|YP_004384113.1| - 0.017 15.0 1.2 0.093 12.6 0.1 2.5 2 1 0 2 2 1 0 AAA domain (Cdc48 subfamily) Sigma54_activ_2 PF14532.1 gi|330507685|ref|YP_004384113.1| - 0.032 14.2 0.0 0.1 12.6 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain Bac_DnaA PF00308.13 gi|330507685|ref|YP_004384113.1| - 0.034 13.7 0.2 0.17 11.5 0.2 2.1 1 1 0 1 1 1 0 Bacterial dnaA protein AAA_5 PF07728.9 gi|330507685|ref|YP_004384113.1| - 0.059 13.1 0.2 0.34 10.6 0.1 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|330507685|ref|YP_004384113.1| - 0.065 12.3 0.0 0.2 10.7 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin PhoH PF02562.11 gi|330507685|ref|YP_004384113.1| - 0.065 12.4 0.0 0.34 10.1 0.0 2.1 3 0 0 3 3 3 0 PhoH-like protein ResIII PF04851.10 gi|330507685|ref|YP_004384113.1| - 0.074 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|330507685|ref|YP_004384113.1| - 0.11 11.9 0.1 0.39 10.1 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF87 PF01935.12 gi|330507685|ref|YP_004384113.1| - 0.19 11.4 2.5 2.7 7.7 0.2 2.9 2 1 1 3 3 3 0 Domain of unknown function DUF87 UPF0147 PF03685.8 gi|330507686|ref|YP_004384114.1| - 2.7e-29 100.8 2.2 2.9e-29 100.7 1.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|330507686|ref|YP_004384114.1| - 0.093 12.8 0.3 0.5 10.5 0.0 2.0 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.7 gi|330507687|ref|YP_004384115.1| - 7.7e-11 41.5 2.0 2e-10 40.2 1.0 2.0 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ada_Zn_binding PF02805.11 gi|330507688|ref|YP_004384116.1| - 1.3e-06 27.8 0.0 2.4e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Metal binding domain of Ada Daxx PF03344.10 gi|330507688|ref|YP_004384116.1| - 5.9 5.2 18.4 8.2 4.7 12.7 1.1 1 0 0 1 1 1 0 Daxx Family BUD22 PF09073.5 gi|330507688|ref|YP_004384116.1| - 9 5.2 20.6 13 4.7 14.3 1.2 1 0 0 1 1 1 0 BUD22 TP_methylase PF00590.15 gi|330507689|ref|YP_004384117.1| - 2.7e-25 89.3 0.1 7.7e-25 87.8 0.1 1.8 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.12 gi|330507690|ref|YP_004384118.1| - 3.2e-41 141.0 0.9 4.2e-41 140.6 0.6 1.1 1 0 0 1 1 1 1 CbiD TruB_C PF09142.6 gi|330507690|ref|YP_004384118.1| - 0.054 13.1 0.1 0.14 11.8 0.1 1.6 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal CbiC PF02570.10 gi|330507691|ref|YP_004384119.1| - 5.3e-61 205.4 0.1 6.2e-61 205.2 0.1 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.15 gi|330507692|ref|YP_004384120.1| - 3e-61 206.7 1.9 5.3e-32 111.2 0.1 2.0 2 0 0 2 2 2 2 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_C PF01890.11 gi|330507693|ref|YP_004384121.1| - 2.8e-29 101.8 0.3 4.5e-29 101.1 0.2 1.3 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus CbiG_N PF11760.3 gi|330507693|ref|YP_004384121.1| - 3e-26 90.9 0.1 8.1e-26 89.5 0.0 1.8 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal NusA_N PF08529.6 gi|330507693|ref|YP_004384121.1| - 0.1 12.5 0.1 0.24 11.3 0.0 1.6 1 1 0 1 1 1 0 NusA N-terminal domain TP_methylase PF00590.15 gi|330507694|ref|YP_004384122.1| - 5.3e-45 153.7 0.2 6.1e-45 153.4 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|330507695|ref|YP_004384123.1| - 3.7e-29 101.9 0.0 1e-28 100.4 0.0 1.6 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_31 PF13847.1 gi|330507696|ref|YP_004384124.1| - 4.6e-07 29.5 0.0 6.1e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330507696|ref|YP_004384124.1| - 7.5e-07 29.7 0.0 1.2e-06 29.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330507696|ref|YP_004384124.1| - 1.2e-05 25.2 0.0 1.6e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507696|ref|YP_004384124.1| - 4e-05 24.0 0.0 9e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|330507696|ref|YP_004384124.1| - 7.4e-05 21.9 0.0 0.0001 21.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|330507696|ref|YP_004384124.1| - 9e-05 21.7 0.0 0.00013 21.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|330507696|ref|YP_004384124.1| - 0.00043 20.6 0.0 0.0005 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330507696|ref|YP_004384124.1| - 0.0015 17.9 0.0 0.0024 17.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|330507696|ref|YP_004384124.1| - 0.0095 15.6 0.0 0.013 15.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|330507696|ref|YP_004384124.1| - 0.038 14.8 0.0 0.058 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|330507696|ref|YP_004384124.1| - 0.049 13.0 0.0 0.083 12.2 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_12 PF08242.7 gi|330507696|ref|YP_004384124.1| - 0.063 13.7 0.1 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|330507696|ref|YP_004384124.1| - 0.071 12.5 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 DNA methylase DOT1 PF08123.8 gi|330507696|ref|YP_004384124.1| - 0.079 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 ATP-grasp_3 PF02655.9 gi|330507697|ref|YP_004384125.1| - 2e-31 109.0 0.0 2.6e-31 108.6 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|330507697|ref|YP_004384125.1| - 3.9e-09 36.4 0.0 6.7e-08 32.4 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330507697|ref|YP_004384125.1| - 0.00083 18.1 0.0 0.2 10.3 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon zf-H2C2_2 PF13465.1 gi|330507698|ref|YP_004384126.1| - 0.23 11.8 4.6 0.19 12.0 1.9 1.9 2 1 0 2 2 2 0 Zinc-finger double domain PfkB PF00294.19 gi|330507700|ref|YP_004384128.1| - 3.4e-60 203.7 0.5 3.9e-60 203.5 0.3 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|330507700|ref|YP_004384128.1| - 3e-05 23.3 0.1 5.5e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Robl_LC7 PF03259.12 gi|330507700|ref|YP_004384128.1| - 0.049 13.2 1.1 0.46 10.0 0.0 3.0 4 0 0 4 4 4 0 Roadblock/LC7 domain DUF1624 PF07786.7 gi|330507701|ref|YP_004384129.1| - 3.4e-68 229.3 16.9 4.3e-68 228.9 11.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.17 gi|330507701|ref|YP_004384129.1| - 8.5e-08 31.4 32.2 5.4e-05 22.1 8.5 2.8 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.4 gi|330507701|ref|YP_004384129.1| - 1.1e-06 27.6 12.5 0.0003 19.5 7.3 2.5 1 1 0 2 2 2 2 OpgC protein UPF0233 PF06781.7 gi|330507701|ref|YP_004384129.1| - 9.7 5.8 11.2 0.2 11.3 1.8 2.7 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0233) Acylphosphatase PF00708.13 gi|330507702|ref|YP_004384130.1| - 8.2e-20 70.7 1.6 2.6e-19 69.0 0.1 2.3 2 1 1 3 3 3 1 Acylphosphatase Apolipoprotein PF01442.13 gi|330507702|ref|YP_004384130.1| - 1.4e-05 24.6 7.1 2.1e-05 24.1 4.9 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.7 gi|330507702|ref|YP_004384130.1| - 2.7e-05 24.0 5.2 0.11 12.2 0.2 2.9 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus ApoLp-III PF07464.6 gi|330507702|ref|YP_004384130.1| - 0.00011 22.2 11.3 0.00018 21.5 7.8 1.4 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) AAA_13 PF13166.1 gi|330507702|ref|YP_004384130.1| - 0.0083 14.6 9.5 0.013 14.0 6.6 1.4 1 0 0 1 1 1 1 AAA domain Cauli_AT PF03233.8 gi|330507702|ref|YP_004384130.1| - 0.013 15.2 2.3 0.013 15.2 1.6 2.2 1 1 1 2 2 2 0 Aphid transmission protein Halo_GVPC PF05465.8 gi|330507702|ref|YP_004384130.1| - 0.019 14.8 5.0 0.081 12.8 0.5 3.9 3 1 0 3 3 3 0 Halobacterial gas vesicle protein C (GVPC) repeat Med4 PF10018.4 gi|330507702|ref|YP_004384130.1| - 0.073 12.4 7.2 0.14 11.5 5.0 1.5 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 Sec5 PF15469.1 gi|330507702|ref|YP_004384130.1| - 0.076 12.7 2.9 12 5.5 2.0 2.4 1 1 0 1 1 1 0 Exocyst complex component Sec5 ApoO PF09769.4 gi|330507702|ref|YP_004384130.1| - 0.1 12.3 0.7 0.81 9.3 0.3 2.0 1 1 1 2 2 2 0 Apolipoprotein O Atg14 PF10186.4 gi|330507702|ref|YP_004384130.1| - 0.1 11.4 14.5 0.32 9.9 5.6 2.2 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 GCS2 PF04107.8 gi|330507702|ref|YP_004384130.1| - 0.11 11.5 0.8 0.23 10.5 0.4 1.6 1 1 0 1 1 1 0 Glutamate-cysteine ligase family 2(GCS2) TBPIP PF07106.8 gi|330507702|ref|YP_004384130.1| - 0.15 11.5 13.6 0.046 13.2 5.2 2.3 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FliT PF05400.8 gi|330507702|ref|YP_004384130.1| - 0.18 12.2 13.1 0.12 12.8 2.5 3.2 1 1 2 3 3 3 0 Flagellar protein FliT Vps51 PF08700.6 gi|330507702|ref|YP_004384130.1| - 0.21 11.4 10.0 18 5.2 6.9 3.5 1 1 0 1 1 1 0 Vps51/Vps67 Fzo_mitofusin PF04799.8 gi|330507702|ref|YP_004384130.1| - 0.28 10.5 6.7 1.9 7.8 0.8 3.0 1 1 2 3 3 3 0 fzo-like conserved region DUF3584 PF12128.3 gi|330507702|ref|YP_004384130.1| - 0.29 8.4 13.8 0.44 7.8 8.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) DUF883 PF05957.8 gi|330507702|ref|YP_004384130.1| - 0.46 10.9 13.1 4.5 7.7 4.2 2.7 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF148 PF02520.12 gi|330507702|ref|YP_004384130.1| - 0.52 10.1 4.6 0.61 9.8 1.3 2.2 1 1 1 2 2 2 0 Domain of unknown function DUF148 Prominin PF05478.6 gi|330507702|ref|YP_004384130.1| - 0.56 7.6 5.7 1.3 6.5 3.8 1.4 1 1 0 1 1 1 0 Prominin DUF2450 PF10475.4 gi|330507702|ref|YP_004384130.1| - 0.65 8.8 6.5 0.39 9.5 2.8 1.7 1 1 1 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) DUF465 PF04325.8 gi|330507702|ref|YP_004384130.1| - 0.71 9.6 16.7 0.99 9.1 2.4 3.6 2 1 1 3 3 3 0 Protein of unknown function (DUF465) DUF2605 PF10792.4 gi|330507702|ref|YP_004384130.1| - 0.73 9.5 3.2 2.1 8.0 0.7 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2605) Syntaxin_2 PF14523.1 gi|330507702|ref|YP_004384130.1| - 0.91 9.5 10.4 0.89 9.6 1.2 3.4 1 1 3 4 4 4 0 Syntaxin-like protein RICH PF05062.7 gi|330507702|ref|YP_004384130.1| - 1.2 9.2 7.4 0.19 11.8 0.8 2.7 3 1 0 3 3 3 0 RICH domain RRF PF01765.14 gi|330507702|ref|YP_004384130.1| - 1.4 8.4 19.4 2 7.8 6.5 2.8 2 1 1 3 3 3 0 Ribosome recycling factor DUF4407 PF14362.1 gi|330507702|ref|YP_004384130.1| - 1.4 7.8 10.2 2.3 7.0 7.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Sds3 PF08598.6 gi|330507702|ref|YP_004384130.1| - 1.4 8.3 11.2 1.4 8.3 0.6 2.2 1 1 1 2 2 2 0 Sds3-like TPR_MLP1_2 PF07926.7 gi|330507702|ref|YP_004384130.1| - 1.5 8.5 12.9 1.1e+02 2.5 9.0 3.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Spc7 PF08317.6 gi|330507702|ref|YP_004384130.1| - 1.7 7.2 15.4 1.5 7.4 5.9 1.6 1 1 1 2 2 2 0 Spc7 kinetochore protein COG2 PF06148.6 gi|330507702|ref|YP_004384130.1| - 2.4 8.0 10.7 7.7 6.3 3.0 3.4 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 V_ATPase_I PF01496.14 gi|330507702|ref|YP_004384130.1| - 2.8 5.6 8.9 0.44 8.3 2.5 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family YtxH PF12732.2 gi|330507702|ref|YP_004384130.1| - 3 8.2 17.2 2.8e+02 1.9 11.9 3.5 1 1 0 1 1 1 0 YtxH-like protein Mnd1 PF03962.10 gi|330507702|ref|YP_004384130.1| - 3.5 7.2 12.5 3.8 7.1 6.4 2.2 1 1 1 2 2 2 0 Mnd1 family Peptidase_M75 PF09375.5 gi|330507702|ref|YP_004384130.1| - 3.5 6.8 8.1 5.7 6.1 1.2 2.5 1 1 1 2 2 2 0 Imelysin APG6 PF04111.7 gi|330507702|ref|YP_004384130.1| - 3.8 6.4 11.7 0.49 9.3 4.2 1.9 1 1 1 2 2 2 0 Autophagy protein Apg6 NPV_P10 PF05531.7 gi|330507702|ref|YP_004384130.1| - 4.3 7.6 11.0 2.8 8.2 1.3 3.2 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein CENP-Q PF13094.1 gi|330507702|ref|YP_004384130.1| - 4.3 7.3 8.6 7.3 6.5 6.0 1.4 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF2390 PF09523.5 gi|330507702|ref|YP_004384130.1| - 5.1 7.3 5.9 23 5.1 3.9 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2390) Spectrin PF00435.16 gi|330507702|ref|YP_004384130.1| - 6.2 7.1 8.6 21 5.4 3.5 2.6 1 1 1 2 2 2 0 Spectrin repeat DUF4546 PF15079.1 gi|330507702|ref|YP_004384130.1| - 6.9 5.7 11.8 80 2.2 6.7 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4546) DUF2203 PF09969.4 gi|330507702|ref|YP_004384130.1| - 7.1 6.8 9.4 3.8 7.7 3.0 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) TFIIB PF00382.14 gi|330507703|ref|YP_004384131.1| - 1.2e-46 156.4 3.8 1.6e-24 85.4 0.9 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|330507703|ref|YP_004384131.1| - 1.3e-19 69.2 2.1 2.3e-19 68.4 0.9 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|330507703|ref|YP_004384131.1| - 8.2e-05 21.8 0.1 0.041 13.1 0.0 3.1 2 0 0 2 2 2 1 Sigma-70, region 4 Cyclin_N PF00134.18 gi|330507703|ref|YP_004384131.1| - 0.0035 16.9 0.0 1 8.9 0.0 2.4 1 1 1 2 2 2 2 Cyclin, N-terminal domain Ribosomal_S27e PF01667.12 gi|330507703|ref|YP_004384131.1| - 0.011 15.2 0.4 0.031 13.8 0.3 1.7 1 0 0 1 1 1 0 Ribosomal protein S27 HTH_AsnC-type PF13404.1 gi|330507703|ref|YP_004384131.1| - 0.014 14.9 2.0 0.091 12.3 0.1 3.0 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain RPA_interact_C PF14768.1 gi|330507703|ref|YP_004384131.1| - 0.038 14.4 0.3 2.6 8.4 0.0 2.4 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HTH_3 PF01381.17 gi|330507703|ref|YP_004384131.1| - 0.05 13.4 0.1 3.1 7.7 0.0 3.6 3 1 1 4 4 4 0 Helix-turn-helix HTH_24 PF13412.1 gi|330507703|ref|YP_004384131.1| - 0.054 12.9 0.1 0.38 10.1 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding OrfB_Zn_ribbon PF07282.6 gi|330507703|ref|YP_004384131.1| - 0.08 12.6 0.4 0.19 11.4 0.3 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Cyclin_C PF02984.14 gi|330507703|ref|YP_004384131.1| - 0.088 12.7 0.0 9 6.2 0.0 2.5 2 0 0 2 2 2 0 Cyclin, C-terminal domain Lar_restr_allev PF14354.1 gi|330507703|ref|YP_004384131.1| - 0.34 11.2 2.3 7.8 6.8 0.9 3.1 2 1 0 2 2 2 0 Restriction alleviation protein Lar Elf1 PF05129.8 gi|330507703|ref|YP_004384131.1| - 0.39 10.4 3.0 0.52 10.0 0.8 2.1 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|330507703|ref|YP_004384131.1| - 0.73 9.1 3.2 0.26 10.5 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|330507703|ref|YP_004384131.1| - 0.88 9.4 3.8 1 9.2 0.2 2.8 4 0 0 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 RNA_POL_M_15KD PF02150.11 gi|330507703|ref|YP_004384131.1| - 1.7 8.4 4.5 9.4 6.0 0.7 2.5 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit PhnA_Zn_Ribbon PF08274.7 gi|330507703|ref|YP_004384131.1| - 5.4 6.8 6.3 1.6 8.5 1.7 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|330507703|ref|YP_004384131.1| - 9.4 6.2 6.7 4.8 7.2 0.4 3.0 2 1 1 3 3 3 0 Zinc ribbon domain Gar1 PF04410.9 gi|330507704|ref|YP_004384132.1| - 6.3e-16 58.2 0.0 7.2e-16 58.0 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region MMR_HSR1 PF01926.18 gi|330507705|ref|YP_004384133.1| - 2.2e-20 72.7 0.0 4.1e-20 71.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|330507705|ref|YP_004384133.1| - 5.8e-18 64.5 0.0 1.2e-17 63.4 0.0 1.6 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|330507705|ref|YP_004384133.1| - 4.4e-12 45.5 0.0 6.4e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|330507705|ref|YP_004384133.1| - 0.00083 19.8 0.0 0.0016 18.9 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein DnaB_C PF03796.10 gi|330507705|ref|YP_004384133.1| - 0.035 13.0 0.1 8.1 5.2 0.0 2.4 3 0 0 3 3 3 0 DnaB-like helicase C terminal domain AIG1 PF04548.11 gi|330507705|ref|YP_004384133.1| - 0.05 12.6 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 AIG1 family Dynamin_N PF00350.18 gi|330507705|ref|YP_004384133.1| - 0.087 12.6 0.1 9.5 6.0 0.0 2.3 1 1 1 2 2 2 0 Dynamin family Ras PF00071.17 gi|330507705|ref|YP_004384133.1| - 0.11 11.9 0.0 27 4.1 0.0 2.8 3 0 0 3 3 3 0 Ras family Methyltransf_26 PF13659.1 gi|330507706|ref|YP_004384134.1| - 7.1e-18 64.7 0.0 1e-17 64.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330507706|ref|YP_004384134.1| - 9.3e-16 57.6 0.0 1.2e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|330507706|ref|YP_004384134.1| - 7.7e-11 42.5 0.0 1.3e-10 41.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330507706|ref|YP_004384134.1| - 6.8e-10 38.7 0.0 1e-09 38.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330507706|ref|YP_004384134.1| - 7.3e-07 29.0 0.0 7.1e-06 25.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507706|ref|YP_004384134.1| - 1.8e-06 28.2 0.0 4.5e-06 26.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507706|ref|YP_004384134.1| - 5.9e-06 26.6 0.0 4.5e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|330507706|ref|YP_004384134.1| - 1.3e-05 24.4 0.0 1.6e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|330507706|ref|YP_004384134.1| - 2.5e-05 23.5 0.0 3.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.7 gi|330507706|ref|YP_004384134.1| - 4.7e-05 23.7 0.0 0.00088 19.7 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain NodS PF05401.6 gi|330507706|ref|YP_004384134.1| - 0.00027 20.3 0.0 0.00051 19.4 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|330507706|ref|YP_004384134.1| - 0.0003 20.2 0.0 0.0004 19.8 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Cons_hypoth95 PF03602.10 gi|330507706|ref|YP_004384134.1| - 0.00047 19.6 0.5 0.0047 16.3 0.3 2.1 1 1 0 1 1 1 1 Conserved hypothetical protein 95 UPF0146 PF03686.8 gi|330507706|ref|YP_004384134.1| - 0.0026 17.5 0.0 0.0053 16.5 0.0 1.5 2 0 0 2 2 1 1 Uncharacterised protein family (UPF0146) TPMT PF05724.6 gi|330507706|ref|YP_004384134.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.4 2 0 0 2 2 1 0 Thiopurine S-methyltransferase (TPMT) UPF0020 PF01170.13 gi|330507706|ref|YP_004384134.1| - 0.023 14.2 0.0 0.19 11.2 0.0 2.0 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 N6_Mtase PF02384.11 gi|330507706|ref|YP_004384134.1| - 0.025 13.6 0.0 0.053 12.5 0.0 1.5 1 1 1 2 2 2 0 N-6 DNA Methylase tRNA_U5-meth_tr PF05958.6 gi|330507706|ref|YP_004384134.1| - 0.036 12.7 0.0 0.047 12.3 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Met_10 PF02475.11 gi|330507706|ref|YP_004384134.1| - 0.044 13.3 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein TehB PF03848.9 gi|330507706|ref|YP_004384134.1| - 0.056 12.6 0.0 0.14 11.3 0.0 1.6 2 0 0 2 2 2 0 Tellurite resistance protein TehB MethyltransfD12 PF02086.10 gi|330507706|ref|YP_004384134.1| - 0.064 12.7 0.0 0.21 11.0 0.0 1.7 1 1 1 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Eco57I PF07669.6 gi|330507706|ref|YP_004384134.1| - 0.067 13.5 0.0 0.094 13.0 0.0 1.3 1 0 0 1 1 1 0 Eco57I restriction-modification methylase Methyltransf_32 PF13679.1 gi|330507706|ref|YP_004384134.1| - 0.1 12.2 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Pox_MCEL PF03291.11 gi|330507706|ref|YP_004384134.1| - 0.11 11.3 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 mRNA capping enzyme PCMT PF01135.14 gi|330507706|ref|YP_004384134.1| - 0.11 12.0 0.0 0.22 10.9 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_16 PF10294.4 gi|330507706|ref|YP_004384134.1| - 0.13 11.7 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Ubie_methyltran PF01209.13 gi|330507706|ref|YP_004384134.1| - 0.16 11.0 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PLDc_2 PF13091.1 gi|330507707|ref|YP_004384135.1| - 3.8e-14 52.5 0.0 8.3e-14 51.4 0.0 1.5 2 0 0 2 2 2 1 PLD-like domain V_ATPase_I PF01496.14 gi|330507707|ref|YP_004384135.1| - 0.012 13.5 0.4 0.015 13.2 0.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family RINT1_TIP1 PF04437.8 gi|330507707|ref|YP_004384135.1| - 0.063 11.8 1.2 0.095 11.2 0.8 1.2 1 0 0 1 1 1 0 RINT-1 / TIP-1 family PLDc PF00614.17 gi|330507707|ref|YP_004384135.1| - 0.065 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Phospholipase D Active site motif TBPIP PF07106.8 gi|330507707|ref|YP_004384135.1| - 0.22 11.0 4.3 0.4 10.2 3.0 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Occludin_ELL PF07303.8 gi|330507707|ref|YP_004384135.1| - 0.23 12.2 7.0 0.42 11.3 4.9 1.4 1 0 0 1 1 1 0 Occludin homology domain IncA PF04156.9 gi|330507707|ref|YP_004384135.1| - 0.33 10.5 6.3 0.59 9.7 4.4 1.3 1 0 0 1 1 1 0 IncA protein IFT20 PF14931.1 gi|330507707|ref|YP_004384135.1| - 5.7 6.8 8.6 1.6 8.6 2.6 2.1 1 1 1 2 2 2 0 Intraflagellar transport complex B, subunit 20 Cpn60_TCP1 PF00118.19 gi|330507708|ref|YP_004384136.1| - 5.7e-157 523.2 13.8 6.5e-157 523.0 9.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family CSD PF00313.17 gi|330507709|ref|YP_004384137.1| - 1.3e-18 66.5 2.6 1.4e-18 66.4 1.8 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.6 gi|330507709|ref|YP_004384137.1| - 0.067 12.7 2.6 0.1 12.1 1.8 1.4 1 1 0 1 1 1 0 Ribonuclease B OB domain UPF0016 PF01169.14 gi|330507710|ref|YP_004384138.1| - 1.4e-43 146.9 15.2 4.3e-24 84.4 2.6 2.1 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 TauE PF01925.14 gi|330507710|ref|YP_004384138.1| - 0.00012 21.6 13.5 0.016 14.7 1.5 2.2 1 1 0 2 2 2 2 Sulfite exporter TauE/SafE HupE_UreJ PF04955.7 gi|330507710|ref|YP_004384138.1| - 0.017 14.4 1.5 0.017 14.4 1.0 2.1 2 0 0 2 2 2 0 HupE / UreJ protein L_HGMIC_fpl PF10242.4 gi|330507710|ref|YP_004384138.1| - 0.054 13.5 1.9 0.1 12.6 1.3 1.4 1 0 0 1 1 1 0 Lipoma HMGIC fusion partner-like protein SirB PF04247.7 gi|330507710|ref|YP_004384138.1| - 0.14 11.9 8.5 0.6 9.8 1.4 2.5 2 1 0 2 2 2 0 Invasion gene expression up-regulator, SirB PGG PF13962.1 gi|330507710|ref|YP_004384138.1| - 0.7 9.5 4.5 0.38 10.3 0.8 2.0 2 0 0 2 2 2 0 Domain of unknown function MgtE PF01769.11 gi|330507710|ref|YP_004384138.1| - 3.2 8.0 9.9 1.2 9.4 2.9 2.2 2 0 0 2 2 2 0 Divalent cation transporter GTP_EFTU PF00009.22 gi|330507711|ref|YP_004384139.1| - 1.1e-33 116.2 0.1 9.6e-33 113.2 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|330507711|ref|YP_004384139.1| - 9e-22 77.0 0.6 2.4e-21 75.6 0.1 1.9 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|330507711|ref|YP_004384139.1| - 6.8e-14 51.2 4.3 9.9e-14 50.7 2.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|330507711|ref|YP_004384139.1| - 1.9e-08 34.2 6.2 6e-07 29.4 0.0 3.4 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|330507711|ref|YP_004384139.1| - 2e-05 24.4 0.0 6.3e-05 22.9 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|330507711|ref|YP_004384139.1| - 0.0021 18.5 0.0 0.0041 17.6 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|330507711|ref|YP_004384139.1| - 0.0039 16.7 0.0 0.014 14.9 0.0 1.9 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|330507711|ref|YP_004384139.1| - 0.012 15.3 0.2 0.033 13.8 0.1 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|330507711|ref|YP_004384139.1| - 0.039 13.4 0.0 0.34 10.4 0.0 2.5 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.18 gi|330507711|ref|YP_004384139.1| - 0.063 13.0 0.1 0.47 10.2 0.0 2.2 2 0 0 2 2 2 0 Dynamin family DUF258 PF03193.11 gi|330507711|ref|YP_004384139.1| - 0.17 11.0 0.4 0.6 9.2 0.1 2.0 2 1 0 2 2 2 0 Protein of unknown function, DUF258 NDK PF00334.14 gi|330507712|ref|YP_004384140.1| - 6.4e-52 174.9 0.0 7.3e-52 174.7 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|330507713|ref|YP_004384141.1| - 1.2e-19 69.8 1.1 1.3e-19 69.7 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e SerH PF06873.6 gi|330507713|ref|YP_004384141.1| - 0.00036 19.2 0.1 0.00036 19.2 0.1 1.0 1 0 0 1 1 1 1 Cell surface immobilisation antigen SerH YHS PF04945.8 gi|330507713|ref|YP_004384141.1| - 0.00073 19.3 0.9 0.00087 19.0 0.6 1.1 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|330507713|ref|YP_004384141.1| - 0.00075 19.0 2.8 0.0011 18.5 2.0 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ras PF00071.17 gi|330507713|ref|YP_004384141.1| - 0.04 13.3 0.0 0.041 13.2 0.0 1.0 1 0 0 1 1 1 0 Ras family Ta0938 PF11494.3 gi|330507713|ref|YP_004384141.1| - 0.078 13.0 0.3 0.081 13.0 0.2 1.1 1 0 0 1 1 1 0 Ta0938 DUF2175 PF09943.4 gi|330507713|ref|YP_004384141.1| - 0.12 12.3 0.6 0.14 12.2 0.4 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) zf-C4_ClpX PF06689.8 gi|330507713|ref|YP_004384141.1| - 0.19 11.2 4.3 0.3 10.6 3.0 1.6 1 1 0 1 1 1 0 ClpX C4-type zinc finger DUF329 PF03884.9 gi|330507713|ref|YP_004384141.1| - 0.22 11.0 3.2 1.2 8.7 2.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF329) DUF581 PF04570.9 gi|330507713|ref|YP_004384141.1| - 0.47 9.7 3.8 1.5 8.1 2.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF581) Ribosomal_S28e PF01200.13 gi|330507714|ref|YP_004384142.1| - 2.2e-28 97.7 0.6 2.4e-28 97.6 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|330507715|ref|YP_004384143.1| - 5.1e-25 86.8 0.4 5.9e-25 86.6 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|330507715|ref|YP_004384143.1| - 0.00081 19.1 0.0 0.0011 18.7 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain Enolase_N PF03952.11 gi|330507715|ref|YP_004384143.1| - 0.011 15.6 0.1 0.016 15.1 0.1 1.3 1 1 0 1 1 1 0 Enolase, N-terminal domain Pterin_bind PF00809.17 gi|330507717|ref|YP_004384145.1| - 8.7e-12 44.8 0.1 2.5e-11 43.3 0.1 1.8 1 1 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.1 gi|330507717|ref|YP_004384145.1| - 3.2e-09 36.5 0.0 7.5e-09 35.3 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4346) PEP_mutase PF13714.1 gi|330507717|ref|YP_004384145.1| - 0.0044 16.2 0.4 0.46 9.6 0.0 2.6 3 0 0 3 3 3 2 Phosphoenolpyruvate phosphomutase DUF561 PF04481.7 gi|330507717|ref|YP_004384145.1| - 0.057 12.3 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) DUF473 PF04322.7 gi|330507718|ref|YP_004384146.1| - 1.6e-31 108.4 0.0 1.8e-31 108.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.4 gi|330507719|ref|YP_004384147.1| - 4e-50 170.7 0.1 4.6e-50 170.5 0.0 1.0 1 0 0 1 1 1 1 PAC2 family ATP-grasp_5 PF13549.1 gi|330507720|ref|YP_004384148.1| - 5.2e-75 251.4 0.0 8.7e-75 250.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|330507720|ref|YP_004384148.1| - 1.9e-44 150.6 0.1 1.2e-43 147.9 0.2 2.3 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|330507720|ref|YP_004384148.1| - 2.2e-22 79.4 0.1 7.5e-22 77.6 0.0 2.0 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|330507720|ref|YP_004384148.1| - 5.3e-16 58.9 0.1 2.3e-15 56.8 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|330507720|ref|YP_004384148.1| - 1.9e-05 24.1 0.0 3.4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|330507720|ref|YP_004384148.1| - 0.0048 17.4 0.0 0.048 14.1 0.0 2.4 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh PF00984.14 gi|330507720|ref|YP_004384148.1| - 0.037 14.2 0.0 0.34 11.1 0.0 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain DisA-linker PF10635.4 gi|330507720|ref|YP_004384148.1| - 0.11 11.9 0.3 0.75 9.2 0.0 2.4 3 0 0 3 3 3 0 DisA bacterial checkpoint controller linker region Herp-Cyclin PF09241.5 gi|330507720|ref|YP_004384148.1| - 0.17 12.1 0.1 0.51 10.6 0.1 1.7 1 0 0 1 1 1 0 Herpesviridae viral cyclin TrbH PF07283.6 gi|330507721|ref|YP_004384149.1| - 0.13 12.1 0.1 0.31 10.8 0.1 1.7 1 1 1 2 2 2 0 Conjugal transfer protein TrbH SRP54 PF00448.17 gi|330507723|ref|YP_004384151.1| - 9.3e-69 230.7 4.3 9.3e-69 230.7 3.0 1.6 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|330507723|ref|YP_004384151.1| - 6.9e-30 103.3 3.2 6.9e-30 103.3 2.2 2.7 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|330507723|ref|YP_004384151.1| - 3.1e-17 62.4 0.5 8.1e-17 61.0 0.1 1.9 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|330507723|ref|YP_004384151.1| - 4.2e-09 36.0 2.7 3.4e-08 33.1 1.9 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|330507723|ref|YP_004384151.1| - 7.9e-06 25.4 1.7 5.4e-05 22.7 1.2 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|330507723|ref|YP_004384151.1| - 0.00017 21.4 0.0 0.00038 20.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|330507723|ref|YP_004384151.1| - 0.00024 20.8 0.0 0.00064 19.4 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|330507723|ref|YP_004384151.1| - 0.00091 19.2 0.9 0.0028 17.6 0.1 2.1 2 1 0 2 2 2 1 AAA ATPase domain APS_kinase PF01583.15 gi|330507723|ref|YP_004384151.1| - 0.0011 18.6 0.1 0.0027 17.3 0.0 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_17 PF13207.1 gi|330507723|ref|YP_004384151.1| - 0.0015 19.3 0.1 0.0049 17.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|330507723|ref|YP_004384151.1| - 0.003 17.5 0.4 0.012 15.5 0.1 2.1 2 1 0 2 2 1 1 50S ribosome-binding GTPase 6PF2K PF01591.13 gi|330507723|ref|YP_004384151.1| - 0.003 16.6 0.0 0.0064 15.5 0.0 1.5 1 0 0 1 1 1 1 6-phosphofructo-2-kinase Zeta_toxin PF06414.7 gi|330507723|ref|YP_004384151.1| - 0.0031 16.6 0.0 0.0086 15.1 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin ArgK PF03308.11 gi|330507723|ref|YP_004384151.1| - 0.0051 15.6 0.2 0.0051 15.6 0.1 1.8 2 1 0 2 2 1 1 ArgK protein AAA_10 PF12846.2 gi|330507723|ref|YP_004384151.1| - 0.0068 15.8 0.5 0.011 15.1 0.4 1.6 1 1 0 1 1 1 1 AAA-like domain KTI12 PF08433.5 gi|330507723|ref|YP_004384151.1| - 0.0079 15.4 0.0 0.021 14.0 0.0 1.7 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|330507723|ref|YP_004384151.1| - 0.012 15.9 0.4 0.054 13.8 0.3 2.3 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|330507723|ref|YP_004384151.1| - 0.013 14.8 0.1 0.15 11.4 0.1 2.5 2 0 0 2 2 2 0 Thymidylate kinase TrwB_AAD_bind PF10412.4 gi|330507723|ref|YP_004384151.1| - 0.017 13.7 0.1 0.034 12.7 0.1 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SRPRB PF09439.5 gi|330507723|ref|YP_004384151.1| - 0.017 14.3 0.2 0.81 8.8 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_22 PF13401.1 gi|330507723|ref|YP_004384151.1| - 0.017 15.2 0.9 0.049 13.7 0.1 2.2 2 1 0 2 2 1 0 AAA domain AAA_19 PF13245.1 gi|330507723|ref|YP_004384151.1| - 0.02 14.6 0.1 0.083 12.6 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_5 PF07728.9 gi|330507723|ref|YP_004384151.1| - 0.024 14.3 0.0 0.074 12.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ResIII PF04851.10 gi|330507723|ref|YP_004384151.1| - 0.038 13.8 0.0 0.077 12.8 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|330507723|ref|YP_004384151.1| - 0.046 13.1 1.0 0.078 12.3 0.1 1.9 2 0 0 2 2 1 0 AAA domain PduV-EutP PF10662.4 gi|330507723|ref|YP_004384151.1| - 0.056 12.9 1.7 2 7.8 0.2 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.1 gi|330507723|ref|YP_004384151.1| - 0.071 12.6 0.1 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|330507723|ref|YP_004384151.1| - 0.072 13.0 0.5 0.46 10.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF3161 PF11362.3 gi|330507723|ref|YP_004384151.1| - 0.095 12.6 0.2 0.8 9.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3161) AAA PF00004.24 gi|330507723|ref|YP_004384151.1| - 0.11 12.7 1.4 0.84 9.8 0.5 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Peptidase_C1 PF00112.18 gi|330507725|ref|YP_004384153.1| - 4e-36 124.9 0.0 5.3e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 Papain family cysteine protease Peptidase_C39_2 PF13529.1 gi|330507725|ref|YP_004384153.1| - 0.11 12.8 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 Peptidase_C39 like family DUF4044 PF13253.1 gi|330507726|ref|YP_004384154.1| - 0.39 9.8 3.6 0.69 9.1 2.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) Mre11_DNA_bind PF04152.9 gi|330507727|ref|YP_004384155.1| - 0.035 13.9 0.1 0.045 13.6 0.0 1.1 1 0 0 1 1 1 0 Mre11 DNA-binding presumed domain DUF818 PF05677.7 gi|330507727|ref|YP_004384155.1| - 0.15 10.8 0.2 0.18 10.5 0.2 1.1 1 0 0 1 1 1 0 Chlamydia CHLPS protein (DUF818) NTP_transf_3 PF12804.2 gi|330507728|ref|YP_004384156.1| - 1.3e-17 64.3 0.0 1.6e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|330507728|ref|YP_004384156.1| - 9.2e-06 25.4 0.0 0.00011 21.9 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|330507728|ref|YP_004384156.1| - 0.001 18.4 0.0 0.0015 17.8 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.11 gi|330507728|ref|YP_004384156.1| - 0.005 15.8 0.2 0.01 14.7 0.0 1.5 2 0 0 2 2 2 1 Guanylyl transferase CofC like CobS PF02654.10 gi|330507729|ref|YP_004384157.1| - 6.9e-54 182.9 16.7 8.3e-54 182.6 11.6 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Myco_arth_vir_N PF09610.5 gi|330507729|ref|YP_004384157.1| - 0.23 11.4 0.3 0.23 11.4 0.2 2.8 3 0 0 3 3 3 0 Mycoplasma virulence signal region (Myco_arth_vir_N) PgpA PF04608.8 gi|330507730|ref|YP_004384158.1| - 1.3e-06 28.3 0.0 1.4e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A Nit_Regul_Hom PF10126.4 gi|330507731|ref|YP_004384159.1| - 2.7e-41 139.7 0.1 3e-41 139.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII DUF2997 PF11211.3 gi|330507731|ref|YP_004384159.1| - 0.071 12.4 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2997) Bcr-Abl_Oligo PF09036.5 gi|330507731|ref|YP_004384159.1| - 0.11 12.4 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain NifU PF01106.12 gi|330507732|ref|YP_004384160.1| - 1e-20 73.2 0.5 1.1e-20 73.0 0.3 1.0 1 0 0 1 1 1 1 NifU-like domain DUF59 PF01883.14 gi|330507732|ref|YP_004384160.1| - 0.028 14.4 0.1 0.09 12.7 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function DUF59 LSM PF01423.17 gi|330507733|ref|YP_004384161.1| - 4.4e-13 48.5 0.1 4.9e-13 48.4 0.1 1.0 1 0 0 1 1 1 1 LSM domain B-block_TFIIIC PF04182.7 gi|330507734|ref|YP_004384162.1| - 0.00017 21.3 0.0 0.00028 20.6 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|330507734|ref|YP_004384162.1| - 0.0065 16.1 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|330507734|ref|YP_004384162.1| - 0.08 12.6 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 MarR family SUI1 PF01253.17 gi|330507735|ref|YP_004384163.1| - 1.1e-24 86.0 3.4 1.3e-24 85.8 2.3 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|330507735|ref|YP_004384163.1| - 0.043 14.0 0.6 0.088 13.0 0.5 1.6 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) NIF3 PF01784.13 gi|330507735|ref|YP_004384163.1| - 0.077 12.5 0.1 0.079 12.5 0.1 1.1 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) DTW PF03942.10 gi|330507735|ref|YP_004384163.1| - 0.31 10.1 1.5 0.43 9.7 1.1 1.2 1 0 0 1 1 1 0 DTW domain VWA_2 PF13519.1 gi|330507736|ref|YP_004384164.1| - 6.1e-18 65.5 1.6 1.3e-14 54.7 0.1 2.8 2 1 1 3 3 3 2 von Willebrand factor type A domain DUF1355 PF07090.6 gi|330507736|ref|YP_004384164.1| - 3.6e-11 42.7 0.0 7.6e-11 41.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) VWA PF00092.23 gi|330507736|ref|YP_004384164.1| - 8.3e-10 38.6 0.2 4.5e-05 23.2 0.0 2.3 2 0 0 2 2 2 2 von Willebrand factor type A domain Usp PF00582.21 gi|330507736|ref|YP_004384164.1| - 0.018 15.2 0.0 0.047 13.8 0.0 1.6 1 0 0 1 1 1 0 Universal stress protein family Peptidase_C25_C PF03785.9 gi|330507736|ref|YP_004384164.1| - 0.028 14.2 0.5 3.7 7.4 0.0 2.7 2 0 0 2 2 2 0 Peptidase family C25, C terminal ig-like domain ThuA PF06283.6 gi|330507736|ref|YP_004384164.1| - 0.054 13.1 0.0 0.22 11.1 0.0 2.0 1 1 0 1 1 1 0 Trehalose utilisation VWA_CoxE PF05762.9 gi|330507736|ref|YP_004384164.1| - 0.076 12.1 0.1 2.6 7.1 0.0 2.7 2 2 0 2 2 2 0 VWA domain containing CoxE-like protein BatA PF07584.6 gi|330507737|ref|YP_004384165.1| - 5.2e-17 61.8 1.5 5.2e-17 61.8 1.0 2.3 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|330507737|ref|YP_004384165.1| - 1.8e-05 24.9 0.1 3.1e-05 24.1 0.1 1.6 1 1 0 1 1 1 1 von Willebrand factor type A domain MFS_1 PF07690.11 gi|330507737|ref|YP_004384165.1| - 0.024 13.3 0.1 0.039 12.6 0.1 1.2 1 0 0 1 1 1 0 Major Facilitator Superfamily FeS PF04060.8 gi|330507738|ref|YP_004384166.1| - 3.7e-14 51.9 3.0 3.7e-14 51.9 2.1 2.5 3 0 0 3 3 2 1 Putative Fe-S cluster Fer4 PF00037.22 gi|330507738|ref|YP_004384166.1| - 6.7e-09 34.9 20.2 1.4e-07 30.7 3.3 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330507738|ref|YP_004384166.1| - 4.4e-08 33.3 15.5 3.6e-05 24.0 4.5 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330507738|ref|YP_004384166.1| - 5.6e-07 29.7 11.7 0.00013 22.1 3.5 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330507738|ref|YP_004384166.1| - 5.7e-07 29.0 17.2 6.1e-06 25.8 2.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330507738|ref|YP_004384166.1| - 4.7e-06 26.2 15.5 3.5e-05 23.5 7.5 3.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330507738|ref|YP_004384166.1| - 6.4e-06 25.8 19.3 0.00015 21.4 2.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330507738|ref|YP_004384166.1| - 8.3e-06 25.7 10.6 0.00018 21.4 2.5 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330507738|ref|YP_004384166.1| - 1.2e-05 25.2 18.5 0.00015 21.8 1.7 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330507738|ref|YP_004384166.1| - 5e-05 23.0 12.0 0.00025 20.8 0.5 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330507738|ref|YP_004384166.1| - 0.00034 21.2 15.4 0.11 13.2 5.1 2.7 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|330507738|ref|YP_004384166.1| - 0.0004 20.6 11.0 0.0028 17.9 2.6 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|330507738|ref|YP_004384166.1| - 0.0058 16.4 11.3 0.035 13.9 2.7 3.3 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330507738|ref|YP_004384166.1| - 0.017 15.6 24.4 0.036 14.6 4.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Exonuc_VII_S PF02609.11 gi|330507738|ref|YP_004384166.1| - 0.094 12.5 0.6 0.21 11.3 0.0 1.8 2 0 0 2 2 2 0 Exonuclease VII small subunit Fer4_18 PF13746.1 gi|330507738|ref|YP_004384166.1| - 0.096 13.1 16.1 0.062 13.7 3.5 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain YhfH PF14149.1 gi|330507738|ref|YP_004384166.1| - 0.21 11.4 0.1 0.21 11.4 0.1 2.7 3 0 0 3 3 2 0 YhfH-like protein TPP_enzyme_M PF00205.17 gi|330507739|ref|YP_004384167.1| - 0.003 17.3 0.0 2.2 8.0 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain Molybdopterin PF00384.17 gi|330507739|ref|YP_004384167.1| - 0.059 12.1 0.0 1.2 7.7 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|330507740|ref|YP_004384168.1| - 6.2e-08 32.4 0.0 7.1e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain OTCace PF00185.19 gi|330507741|ref|YP_004384169.1| - 7.6e-51 172.1 0.0 1e-50 171.6 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|330507741|ref|YP_004384169.1| - 4.6e-47 159.2 0.0 6.6e-47 158.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NTP_transf_2 PF01909.18 gi|330507742|ref|YP_004384170.1| - 1.4e-12 47.7 0.0 1.9e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF1355 PF07090.6 gi|330507743|ref|YP_004384171.1| - 0.15 11.4 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1355) TPR_17 PF13431.1 gi|330507744|ref|YP_004384172.1| - 4.6e-23 79.4 0.4 2.9e-06 27.0 0.0 4.8 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330507744|ref|YP_004384172.1| - 1e-22 79.5 6.2 4.5e-10 39.0 0.1 3.9 3 1 1 4 4 4 3 TPR repeat TPR_2 PF07719.12 gi|330507744|ref|YP_004384172.1| - 1.6e-20 71.2 0.4 0.0012 18.5 0.1 5.7 5 1 0 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330507744|ref|YP_004384172.1| - 9e-20 69.3 4.2 0.0032 17.0 0.0 5.5 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330507744|ref|YP_004384172.1| - 1.1e-15 56.0 5.2 0.0029 17.2 0.3 5.4 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330507744|ref|YP_004384172.1| - 1.7e-15 57.2 0.0 6.8e-07 29.8 0.0 3.3 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330507744|ref|YP_004384172.1| - 3.2e-12 46.1 0.0 1.6e-05 24.6 0.0 2.8 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330507744|ref|YP_004384172.1| - 3.6e-12 45.7 0.0 0.00018 21.8 0.0 4.2 3 1 2 5 5 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330507744|ref|YP_004384172.1| - 2.2e-10 40.7 0.0 4e-05 23.8 0.0 3.4 2 1 0 3 3 3 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|330507744|ref|YP_004384172.1| - 2.3e-09 36.5 0.1 5.6e-05 22.0 0.0 2.9 2 1 1 3 3 3 2 NMDA receptor-regulated protein 1 Apc3 PF12895.2 gi|330507744|ref|YP_004384172.1| - 9.1e-08 32.1 0.1 0.00035 20.6 0.0 3.1 2 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.1 gi|330507744|ref|YP_004384172.1| - 5.5e-07 29.4 0.1 0.028 14.3 0.0 3.5 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330507744|ref|YP_004384172.1| - 0.00025 20.6 0.0 1.3 8.9 0.0 4.1 3 1 1 4 4 4 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330507744|ref|YP_004384172.1| - 0.00025 20.8 0.0 0.027 14.3 0.0 3.6 3 1 1 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat PPTA PF01239.17 gi|330507744|ref|YP_004384172.1| - 0.0025 17.1 10.4 0.2 11.0 0.0 4.7 6 0 0 6 6 6 2 Protein prenyltransferase alpha subunit repeat Alkyl_sulf_dimr PF14863.1 gi|330507744|ref|YP_004384172.1| - 0.028 14.6 0.1 0.83 9.8 0.0 2.3 2 0 0 2 2 2 0 Alkyl sulfatase dimerisation ChAPs PF09295.5 gi|330507744|ref|YP_004384172.1| - 0.029 13.1 0.1 0.23 10.1 0.0 2.0 2 0 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) DLD PF14878.1 gi|330507744|ref|YP_004384172.1| - 0.14 12.3 0.4 0.32 11.1 0.3 1.5 1 0 0 1 1 1 0 Death-like domain of SPT6 DUF445 PF04286.7 gi|330507745|ref|YP_004384173.1| - 0.0048 16.4 0.6 0.0055 16.2 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF445) MarR_2 PF12802.2 gi|330507745|ref|YP_004384173.1| - 0.079 12.6 0.2 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 MarR family Phage_integrase PF00589.17 gi|330507746|ref|YP_004384174.1| - 1.1e-10 41.4 0.0 1.8e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|330507746|ref|YP_004384174.1| - 2.1e-06 27.9 0.1 6e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|330507746|ref|YP_004384174.1| - 0.0026 17.8 0.2 0.0067 16.5 0.1 1.8 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DDE_Tnp_1 PF01609.16 gi|330507747|ref|YP_004384175.1| - 1.8e-17 63.5 0.0 4.7e-17 62.2 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|330507747|ref|YP_004384175.1| - 0.017 14.8 0.1 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_ISAZ013 PF07592.6 gi|330507748|ref|YP_004384176.1| - 1.4e-135 451.0 0.0 1.7e-135 450.7 0.0 1.1 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain HTH_29 PF13551.1 gi|330507748|ref|YP_004384176.1| - 1.1e-05 25.5 0.0 2.6e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_Tc3_2 PF01498.13 gi|330507748|ref|YP_004384176.1| - 2.9e-05 24.0 0.0 8e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 Transposase HTH_32 PF13565.1 gi|330507748|ref|YP_004384176.1| - 0.00047 20.9 0.3 0.0017 19.1 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_21 PF13276.1 gi|330507748|ref|YP_004384176.1| - 0.0005 20.0 0.0 0.0011 18.9 0.0 1.5 1 0 0 1 1 1 1 HTH-like domain HTH_12 PF08461.5 gi|330507748|ref|YP_004384176.1| - 0.0022 17.6 0.6 0.0075 15.9 0.0 2.2 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain GSH-S_N PF02951.9 gi|330507748|ref|YP_004384176.1| - 0.0065 16.2 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain HTH_36 PF13730.1 gi|330507748|ref|YP_004384176.1| - 0.0092 16.0 0.4 0.93 9.6 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|330507748|ref|YP_004384176.1| - 0.044 13.4 0.0 10 5.9 0.0 2.8 2 0 0 2 2 2 0 Homeodomain-like domain DDE_Tnp_IS1 PF03400.8 gi|330507749|ref|YP_004384177.1| - 1.8e-07 31.3 0.2 0.0001 22.4 0.1 2.3 2 0 0 2 2 2 2 IS1 transposase rve_3 PF13683.1 gi|330507749|ref|YP_004384177.1| - 0.00015 21.2 0.3 0.00031 20.2 0.2 1.5 1 0 0 1 1 1 1 Integrase core domain DnaB_C PF03796.10 gi|330507749|ref|YP_004384177.1| - 0.1 11.4 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain CHAT PF12770.2 gi|330507751|ref|YP_004384179.1| - 3.7e-08 32.8 0.0 3.7e-07 29.5 0.0 2.0 1 1 0 1 1 1 1 CHAT domain Peptidase_C25 PF01364.13 gi|330507751|ref|YP_004384179.1| - 0.037 13.0 0.0 0.045 12.7 0.0 1.1 1 0 0 1 1 1 0 Peptidase family C25 O-FucT PF10250.4 gi|330507752|ref|YP_004384180.1| - 0.018 14.1 0.2 0.022 13.8 0.2 1.2 1 0 0 1 1 1 0 GDP-fucose protein O-fucosyltransferase Peptidase_M3_N PF08439.5 gi|330507752|ref|YP_004384180.1| - 0.029 14.4 0.1 0.054 13.5 0.0 1.5 1 0 0 1 1 1 0 Oligopeptidase F UPF0150 PF03681.10 gi|330507753|ref|YP_004384181.1| - 2e-08 33.6 0.6 3e-08 33.1 0.3 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|330507753|ref|YP_004384181.1| - 0.053 13.5 0.0 0.067 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) Trypsin_2 PF13365.1 gi|330507754|ref|YP_004384182.1| - 4.3e-18 65.4 0.7 7.2e-18 64.7 0.5 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain TPR_1 PF00515.23 gi|330507754|ref|YP_004384182.1| - 3.1e-11 42.3 10.7 8.6e-07 28.3 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330507754|ref|YP_004384182.1| - 8.9e-11 40.8 8.9 1.1e-07 31.2 0.0 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330507754|ref|YP_004384182.1| - 4.6e-10 38.9 7.5 4.1e-09 35.9 2.2 2.5 1 1 0 2 2 2 1 TPR repeat Trypsin PF00089.21 gi|330507754|ref|YP_004384182.1| - 1.1e-07 31.7 0.9 5e-07 29.5 0.6 1.9 1 1 0 1 1 1 1 Trypsin TPR_8 PF13181.1 gi|330507754|ref|YP_004384182.1| - 4.8e-07 29.0 3.3 0.00019 20.9 0.0 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330507754|ref|YP_004384182.1| - 2e-06 27.5 0.9 0.0078 16.3 0.1 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat Peptidase_S7 PF00949.16 gi|330507754|ref|YP_004384182.1| - 2.2e-06 27.0 0.2 6.2e-06 25.6 0.1 1.7 1 1 1 2 2 2 1 Peptidase S7, Flavivirus NS3 serine protease TPR_12 PF13424.1 gi|330507754|ref|YP_004384182.1| - 1.2e-05 25.1 4.0 0.00049 19.9 1.0 2.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330507754|ref|YP_004384182.1| - 9.6e-05 22.9 0.6 0.00032 21.2 0.5 1.7 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330507754|ref|YP_004384182.1| - 0.00048 19.9 0.5 0.0046 16.7 0.1 2.5 2 1 0 2 2 2 1 Tetratricopeptide repeat Peptidase_S46 PF10459.4 gi|330507754|ref|YP_004384182.1| - 0.0033 15.9 0.6 0.28 9.5 0.1 2.1 2 0 0 2 2 2 2 Peptidase S46 Apc3 PF12895.2 gi|330507754|ref|YP_004384182.1| - 0.0054 16.8 15.0 0.011 15.7 2.8 2.1 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|330507754|ref|YP_004384182.1| - 0.011 16.0 0.2 0.051 13.9 0.1 2.0 1 1 1 2 2 2 0 Tetratricopeptide repeat Peptidase_S29 PF02907.10 gi|330507754|ref|YP_004384182.1| - 0.049 13.1 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease PIN PF01850.16 gi|330507756|ref|YP_004384184.1| - 5.1e-13 49.4 2.7 5.7e-13 49.2 1.9 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|330507756|ref|YP_004384184.1| - 0.017 15.7 0.9 0.025 15.2 0.6 1.3 1 0 0 1 1 1 0 PIN domain Mut7-C PF01927.11 gi|330507756|ref|YP_004384184.1| - 0.11 12.4 0.2 0.35 10.8 0.1 2.0 1 1 0 1 1 1 0 Mut7-C RNAse domain CCDC66 PF15236.1 gi|330507757|ref|YP_004384185.1| - 0.073 12.6 2.9 0.069 12.7 2.0 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 66 Isochorismatase PF00857.15 gi|330507758|ref|YP_004384186.1| - 1.2e-26 93.7 0.1 1.5e-26 93.3 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family AhpC-TSA PF00578.16 gi|330507759|ref|YP_004384187.1| - 5.9e-34 116.4 0.0 8.1e-34 115.9 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|330507759|ref|YP_004384187.1| - 1.2e-16 60.5 0.0 1.6e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|330507759|ref|YP_004384187.1| - 2e-07 30.5 2.1 7.4e-07 28.7 1.4 1.9 1 1 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF2375 PF09558.5 gi|330507759|ref|YP_004384187.1| - 0.063 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2375) Plasmid_stabil PF05016.9 gi|330507760|ref|YP_004384188.1| - 3.6e-07 30.4 0.0 5.8e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Plasmid stabilisation system protein CbiG_N PF11760.3 gi|330507760|ref|YP_004384188.1| - 0.051 13.2 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 Cobalamin synthesis G N-terminal E1-E2_ATPase PF00122.15 gi|330507762|ref|YP_004384190.1| - 1.1e-58 198.0 0.5 1.1e-58 198.0 0.3 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|330507762|ref|YP_004384190.1| - 2.5e-37 129.3 0.0 6.7e-37 127.9 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|330507762|ref|YP_004384190.1| - 3.8e-34 117.8 7.2 3.8e-34 117.8 5.0 1.7 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus HAD PF12710.2 gi|330507762|ref|YP_004384190.1| - 4.7e-19 69.2 0.0 1.1e-18 68.1 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|330507762|ref|YP_004384190.1| - 7.7e-11 41.2 0.0 2.5e-10 39.6 0.0 2.0 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|330507762|ref|YP_004384190.1| - 6.1e-07 29.2 0.9 9.6e-05 22.0 0.2 2.5 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|330507762|ref|YP_004384190.1| - 1.2e-05 25.1 0.0 2.7e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD_2 PF13419.1 gi|330507762|ref|YP_004384190.1| - 0.005 17.0 0.0 0.023 14.9 0.0 2.2 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase Multi_ubiq PF14452.1 gi|330507762|ref|YP_004384190.1| - 0.076 13.0 0.0 1.1 9.3 0.0 2.5 2 0 0 2 2 2 0 Multiubiquitin SnoaL PF07366.7 gi|330507763|ref|YP_004384191.1| - 1.1e-35 121.9 0.0 1.2e-35 121.7 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|330507763|ref|YP_004384191.1| - 3.4e-20 72.3 0.0 3.9e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain TPR_11 PF13414.1 gi|330507764|ref|YP_004384192.1| - 1.5e-49 165.4 10.3 5.4e-12 45.1 0.1 4.5 1 1 4 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|330507764|ref|YP_004384192.1| - 3.1e-38 127.8 0.1 1.7e-08 33.6 0.0 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330507764|ref|YP_004384192.1| - 2.6e-36 120.5 0.3 1.9e-07 30.4 0.0 6.4 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330507764|ref|YP_004384192.1| - 2.1e-27 92.9 0.4 6e-05 22.9 0.0 5.6 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330507764|ref|YP_004384192.1| - 5.4e-24 84.2 0.0 1.8e-07 31.6 0.1 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330507764|ref|YP_004384192.1| - 3.7e-23 79.5 6.1 1.7e-05 24.2 0.0 5.7 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330507764|ref|YP_004384192.1| - 4.6e-19 68.1 1.7 1.7e-09 37.4 0.0 4.1 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330507764|ref|YP_004384192.1| - 1.1e-18 67.2 0.0 6.8e-06 26.3 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330507764|ref|YP_004384192.1| - 2.8e-14 52.3 0.2 0.053 14.1 0.0 5.9 2 2 4 6 6 6 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330507764|ref|YP_004384192.1| - 2.5e-13 49.6 0.0 0.00058 19.6 0.0 3.9 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330507764|ref|YP_004384192.1| - 7.8e-10 37.8 2.3 0.006 16.3 0.0 4.8 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330507764|ref|YP_004384192.1| - 8.7e-10 38.4 2.4 0.051 14.0 0.0 4.8 4 0 0 4 4 4 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|330507764|ref|YP_004384192.1| - 9.6e-10 38.4 0.1 0.0024 17.9 0.0 3.5 2 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|330507764|ref|YP_004384192.1| - 7e-08 32.4 0.7 0.84 9.4 0.0 5.0 1 1 3 4 4 4 3 Domain of Unknown Function (DUF3856) MIT PF04212.13 gi|330507764|ref|YP_004384192.1| - 4.9e-07 29.5 3.9 0.2 11.5 0.0 4.5 5 1 0 5 5 4 3 MIT (microtubule interacting and transport) domain TPR_10 PF13374.1 gi|330507764|ref|YP_004384192.1| - 1.8e-06 27.6 4.5 0.63 10.0 0.1 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat BTAD PF03704.12 gi|330507764|ref|YP_004384192.1| - 2.2e-05 24.8 0.1 0.058 13.7 0.1 2.4 2 1 0 2 2 2 2 Bacterial transcriptional activator domain TPR_4 PF07721.9 gi|330507764|ref|YP_004384192.1| - 3.3e-05 23.9 0.5 4.6 7.9 0.0 4.0 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|330507764|ref|YP_004384192.1| - 0.00081 18.5 1.4 0.016 14.2 0.8 2.6 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|330507764|ref|YP_004384192.1| - 0.017 15.2 0.0 13 6.0 0.0 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_3 PF07720.7 gi|330507764|ref|YP_004384192.1| - 0.018 14.8 0.6 2.2 8.1 0.0 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_5 PF12688.2 gi|330507764|ref|YP_004384192.1| - 0.018 15.0 0.0 0.91 9.5 0.0 3.0 2 1 1 3 3 3 0 Tetratrico peptide repeat NARP1 PF12569.3 gi|330507764|ref|YP_004384192.1| - 0.02 13.6 0.2 2.8 6.6 0.0 2.5 2 1 0 2 2 2 0 NMDA receptor-regulated protein 1 FAT PF02259.18 gi|330507764|ref|YP_004384192.1| - 0.039 12.9 0.3 4 6.3 0.0 2.9 1 1 0 2 2 2 0 FAT domain PPR PF01535.15 gi|330507764|ref|YP_004384192.1| - 0.082 12.9 0.3 29 4.9 0.0 4.3 5 0 0 5 5 5 0 PPR repeat UPF0051 PF01458.12 gi|330507765|ref|YP_004384193.1| - 2.9e-49 167.5 0.0 3.7e-49 167.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|330507766|ref|YP_004384194.1| - 1.7e-24 86.6 0.0 2.8e-24 85.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330507766|ref|YP_004384194.1| - 4.3e-11 43.3 0.6 9.4e-05 22.5 0.1 2.1 1 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|330507766|ref|YP_004384194.1| - 0.00043 19.5 0.0 0.00069 18.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|330507766|ref|YP_004384194.1| - 0.00057 19.1 1.4 0.62 9.2 0.1 2.3 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|330507766|ref|YP_004384194.1| - 0.00067 20.0 1.5 0.0035 17.6 0.4 2.0 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|330507766|ref|YP_004384194.1| - 0.0043 16.5 0.0 0.0076 15.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|330507766|ref|YP_004384194.1| - 0.0052 16.9 0.3 0.018 15.2 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|330507766|ref|YP_004384194.1| - 0.016 13.6 0.2 0.046 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|330507766|ref|YP_004384194.1| - 0.02 15.7 0.0 0.036 14.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|330507766|ref|YP_004384194.1| - 0.032 13.9 0.1 0.064 13.0 0.1 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|330507766|ref|YP_004384194.1| - 0.047 13.1 0.0 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|330507766|ref|YP_004384194.1| - 0.074 13.3 0.0 3.9 7.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|330507766|ref|YP_004384194.1| - 0.08 12.6 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_28 PF13521.1 gi|330507766|ref|YP_004384194.1| - 0.087 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|330507766|ref|YP_004384194.1| - 0.092 11.7 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus NACHT PF05729.7 gi|330507766|ref|YP_004384194.1| - 0.11 12.1 0.1 0.59 9.7 0.0 1.9 2 0 0 2 2 2 0 NACHT domain PEPCK_ATP PF01293.15 gi|330507766|ref|YP_004384194.1| - 0.17 10.4 0.0 0.24 9.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_22 PF13401.1 gi|330507766|ref|YP_004384194.1| - 0.49 10.5 4.2 0.23 11.5 0.3 2.4 2 1 0 2 2 1 0 AAA domain Orn_Arg_deC_N PF02784.11 gi|330507768|ref|YP_004384196.1| - 2.2e-56 190.8 0.0 3.1e-56 190.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|330507768|ref|YP_004384196.1| - 1.4e-23 82.8 0.0 2e-23 82.2 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|330507768|ref|YP_004384196.1| - 3.6e-11 43.0 0.0 5.7e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain TM_helix PF05552.7 gi|330507769|ref|YP_004384197.1| - 1.8e-51 171.6 39.4 4.7e-16 58.1 2.1 5.9 5 0 0 5 5 5 5 Conserved TM helix NPCC PF08058.6 gi|330507769|ref|YP_004384197.1| - 0.18 11.6 6.7 0.17 11.7 0.3 3.2 3 0 0 3 3 3 0 Nuclear pore complex component Redoxin PF08534.5 gi|330507770|ref|YP_004384198.1| - 0.036 13.6 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 Redoxin FlaC_arch PF05377.6 gi|330507771|ref|YP_004384199.1| - 0.028 14.3 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DDE_3 PF13358.1 gi|330507773|ref|YP_004384201.1| - 2.6e-23 82.3 0.0 3.2e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease rve_3 PF13683.1 gi|330507773|ref|YP_004384201.1| - 0.014 14.8 0.4 0.14 11.6 0.0 2.4 3 0 0 3 3 3 0 Integrase core domain rve_2 PF13333.1 gi|330507773|ref|YP_004384201.1| - 0.024 14.6 0.0 0.051 13.6 0.0 1.6 1 0 0 1 1 1 0 Integrase core domain TPR_1 PF00515.23 gi|330507774|ref|YP_004384202.1| - 4.3e-138 443.9 49.4 6.8e-13 47.6 0.1 12.0 12 0 0 12 12 12 12 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330507774|ref|YP_004384202.1| - 9e-124 403.2 47.9 2.2e-22 78.4 0.6 7.0 5 2 2 7 7 7 7 TPR repeat TPR_2 PF07719.12 gi|330507774|ref|YP_004384202.1| - 5.6e-110 350.6 42.1 1.6e-09 36.9 0.1 12.0 12 0 0 12 12 12 12 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330507774|ref|YP_004384202.1| - 4.4e-83 272.5 37.8 2.2e-14 53.6 0.2 7.4 3 2 4 8 8 8 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330507774|ref|YP_004384202.1| - 1.1e-82 265.4 37.1 3.7e-07 29.8 0.1 11.6 12 0 0 12 12 11 11 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330507774|ref|YP_004384202.1| - 7.4e-78 250.6 41.3 2.4e-06 26.9 0.3 12.0 12 0 0 12 12 12 12 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330507774|ref|YP_004384202.1| - 3.1e-74 244.8 40.5 5.5e-12 45.4 1.2 6.9 1 1 7 8 8 8 8 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330507774|ref|YP_004384202.1| - 2.5e-66 214.0 25.4 5.5e-06 26.5 0.0 12.1 1 1 11 12 12 12 12 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330507774|ref|YP_004384202.1| - 7.9e-57 189.5 60.9 3.5e-10 40.0 0.4 7.9 3 2 6 9 9 9 9 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330507774|ref|YP_004384202.1| - 2e-47 155.2 19.0 0.00032 20.2 0.0 12.1 12 0 0 12 12 12 11 Tetratricopeptide repeat Apc3 PF12895.2 gi|330507774|ref|YP_004384202.1| - 1.1e-41 140.8 17.3 8.1e-10 38.7 0.0 6.1 1 1 6 7 7 7 7 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|330507774|ref|YP_004384202.1| - 1.3e-39 131.9 23.1 0.015 15.7 0.2 12.1 11 1 1 12 12 12 10 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330507774|ref|YP_004384202.1| - 2.3e-39 133.1 6.3 8.9e-06 25.4 0.8 6.8 1 1 5 7 7 7 7 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330507774|ref|YP_004384202.1| - 3.3e-25 87.2 15.5 0.16 11.9 0.2 11.3 11 0 0 11 11 11 5 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330507774|ref|YP_004384202.1| - 1.1e-24 86.0 13.9 0.072 12.9 0.0 11.2 8 3 3 11 11 11 5 Fis1 C-terminal tetratricopeptide repeat DUF3856 PF12968.2 gi|330507774|ref|YP_004384202.1| - 2.5e-21 75.9 14.5 0.039 13.7 0.1 11.4 1 1 5 7 7 7 4 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|330507774|ref|YP_004384202.1| - 3.8e-21 75.4 11.7 0.0015 17.3 0.0 5.9 2 2 4 6 6 6 5 NMDA receptor-regulated protein 1 TPR_4 PF07721.9 gi|330507774|ref|YP_004384202.1| - 2.7e-20 70.6 5.9 0.12 12.8 0.2 11.3 12 0 0 12 12 11 2 Tetratricopeptide repeat TPR_3 PF07720.7 gi|330507774|ref|YP_004384202.1| - 8.6e-20 70.1 35.0 0.012 15.4 0.1 12.5 13 0 0 13 13 12 4 Tetratricopeptide repeat BTAD PF03704.12 gi|330507774|ref|YP_004384202.1| - 8.3e-17 61.8 0.0 0.054 13.7 0.0 5.7 3 3 3 6 6 6 4 Bacterial transcriptional activator domain Apc5 PF12862.2 gi|330507774|ref|YP_004384202.1| - 1.9e-13 50.0 3.8 3 7.7 0.0 10.5 2 2 9 11 11 11 1 Anaphase-promoting complex subunit 5 DUF627 PF04781.7 gi|330507774|ref|YP_004384202.1| - 9.3e-12 44.5 0.0 0.89 9.2 0.0 5.7 5 1 0 6 6 6 3 Protein of unknown function (DUF627) FAT PF02259.18 gi|330507774|ref|YP_004384202.1| - 1.1e-11 44.3 16.1 0.064 12.2 0.0 7.4 1 1 7 8 8 8 4 FAT domain TPR_21 PF09976.4 gi|330507774|ref|YP_004384202.1| - 6e-11 42.4 34.8 0.015 15.2 0.5 6.8 6 1 1 7 7 7 5 Tetratricopeptide repeat TPR_5 PF12688.2 gi|330507774|ref|YP_004384202.1| - 8.6e-10 38.6 0.1 0.12 12.3 0.0 5.8 1 1 4 6 6 6 2 Tetratrico peptide repeat PPR PF01535.15 gi|330507774|ref|YP_004384202.1| - 2e-07 30.5 2.4 43 4.4 0.0 10.2 12 0 0 12 12 12 0 PPR repeat MIT PF04212.13 gi|330507774|ref|YP_004384202.1| - 2.8e-07 30.3 53.0 0.85 9.5 0.3 12.0 4 3 6 12 12 12 3 MIT (microtubule interacting and transport) domain TPR_15 PF13429.1 gi|330507774|ref|YP_004384202.1| - 6.5e-07 28.6 14.6 0.012 14.6 0.2 4.9 1 1 2 4 4 4 4 Tetratricopeptide repeat DUF982 PF06169.7 gi|330507774|ref|YP_004384202.1| - 1.4e-06 27.9 0.6 33 4.3 0.0 6.1 5 0 0 5 5 5 0 Protein of unknown function (DUF982) Coatomer_E PF04733.9 gi|330507774|ref|YP_004384202.1| - 2.3e-06 27.0 0.0 4.2 6.4 0.0 5.2 1 1 3 6 6 6 0 Coatomer epsilon subunit TPR_20 PF14561.1 gi|330507774|ref|YP_004384202.1| - 4.5e-06 26.6 11.3 5 7.3 0.3 6.1 3 3 3 6 6 6 0 Tetratricopeptide repeat DUF1293 PF06950.6 gi|330507774|ref|YP_004384202.1| - 2.1e-05 24.3 3.2 5.8 6.8 0.0 6.1 1 1 4 7 7 7 0 Protein of unknown function (DUF1293) Rapsyn_N PF10579.4 gi|330507774|ref|YP_004384202.1| - 3.8e-05 23.4 2.3 6.7 6.5 0.0 6.7 6 2 2 8 8 6 0 Rapsyn N-terminal myristoylation and linker region SPOB_a PF14689.1 gi|330507774|ref|YP_004384202.1| - 7.4e-05 22.2 11.0 54 3.4 0.0 9.5 12 0 0 12 12 10 0 Sensor_kinase_SpoOB-type, alpha-helical domain PPTA PF01239.17 gi|330507774|ref|YP_004384202.1| - 0.0022 17.2 17.6 1.4 8.4 0.1 8.1 9 0 0 9 9 8 1 Protein prenyltransferase alpha subunit repeat Lambda_Kil PF06301.6 gi|330507774|ref|YP_004384202.1| - 0.0024 17.2 4.2 15 5.1 0.0 7.5 12 0 0 12 12 10 0 Bacteriophage lambda Kil protein RPN7 PF10602.4 gi|330507774|ref|YP_004384202.1| - 0.0025 17.2 16.0 3.8 6.8 0.0 7.4 3 3 3 8 8 8 0 26S proteasome subunit RPN7 Sialidase_penC PF12135.3 gi|330507774|ref|YP_004384202.1| - 0.05 13.2 0.1 50 3.6 0.0 4.8 5 0 0 5 5 5 0 Sialidase enzyme penultimate C terminal domain DUF1108 PF06531.6 gi|330507774|ref|YP_004384202.1| - 0.071 13.2 0.6 81 3.4 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1108) TOM20_plant PF06552.7 gi|330507774|ref|YP_004384202.1| - 0.13 11.8 20.6 19 4.7 0.1 7.9 1 1 6 8 8 8 0 Plant specific mitochondrial import receptor subunit TOM20 Lactamase_B PF00753.22 gi|330507775|ref|YP_004384203.1| - 4.4e-10 39.5 0.8 7.2e-10 38.8 0.5 1.5 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|330507775|ref|YP_004384203.1| - 0.00025 20.6 0.2 0.00031 20.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MMPL PF03176.10 gi|330507776|ref|YP_004384204.1| - 8.2e-44 149.6 21.0 5e-24 84.6 6.3 2.5 2 1 0 2 2 2 2 MMPL family ACR_tran PF00873.14 gi|330507776|ref|YP_004384204.1| - 4.7e-07 27.6 25.7 7e-06 23.7 3.9 2.3 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family SecD_SecF PF02355.11 gi|330507776|ref|YP_004384204.1| - 3.6e-06 26.2 6.3 3.6e-06 26.2 4.3 2.5 3 0 0 3 3 3 1 Protein export membrane protein IncA PF04156.9 gi|330507776|ref|YP_004384204.1| - 9.1 5.8 10.9 5.3 6.5 2.6 3.4 2 1 0 2 2 2 0 IncA protein NPCBM_assoc PF10633.4 gi|330507777|ref|YP_004384205.1| - 8.9e-08 32.0 0.0 0.026 14.5 0.0 3.7 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase HDNR PF15115.1 gi|330507777|ref|YP_004384205.1| - 0.11 12.3 0.2 0.25 11.2 0.1 1.6 1 1 1 2 2 2 0 Domain of unknown function with conserved HDNR motif RDD PF06271.7 gi|330507778|ref|YP_004384206.1| - 7.7e-17 61.4 4.5 8.9e-17 61.2 3.1 1.0 1 0 0 1 1 1 1 RDD family Fer4_5 PF12801.2 gi|330507779|ref|YP_004384207.1| - 5.6e-15 54.8 13.1 3.3e-13 49.1 1.8 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330507779|ref|YP_004384207.1| - 2.1e-07 31.2 10.1 0.00046 20.5 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330507779|ref|YP_004384207.1| - 1.5e-05 25.1 14.7 4e-05 23.7 9.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330507779|ref|YP_004384207.1| - 2.5e-05 23.9 12.7 2.5e-05 23.9 8.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330507779|ref|YP_004384207.1| - 0.00012 22.0 28.2 0.0013 18.6 1.9 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330507779|ref|YP_004384207.1| - 0.00014 21.3 22.2 0.001 18.5 4.2 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330507779|ref|YP_004384207.1| - 0.00021 21.5 14.8 0.0063 16.8 2.4 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330507779|ref|YP_004384207.1| - 0.00055 19.6 16.7 0.037 13.9 1.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|330507779|ref|YP_004384207.1| - 0.0047 17.3 19.2 0.41 11.1 4.5 3.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330507779|ref|YP_004384207.1| - 0.0093 16.2 26.5 0.16 12.3 3.6 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330507779|ref|YP_004384207.1| - 0.097 13.4 15.7 0.57 10.9 3.1 2.7 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|330507779|ref|YP_004384207.1| - 0.097 12.6 22.9 0.17 11.8 4.7 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330507779|ref|YP_004384207.1| - 0.99 9.3 22.1 1.8 8.4 3.6 3.2 2 1 0 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330507779|ref|YP_004384207.1| - 2.1 8.9 12.6 2.1 8.9 3.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Cupin_2 PF07883.6 gi|330507780|ref|YP_004384208.1| - 2.5e-13 49.3 0.1 3.4e-13 48.8 0.1 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|330507780|ref|YP_004384208.1| - 0.0006 19.2 0.0 0.0012 18.2 0.0 1.5 1 1 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|330507780|ref|YP_004384208.1| - 0.0078 15.8 0.0 0.0092 15.6 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|330507780|ref|YP_004384208.1| - 0.019 14.6 0.1 0.023 14.3 0.1 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Na_H_Exchanger PF00999.16 gi|330507781|ref|YP_004384209.1| - 5.8e-69 232.4 53.2 7.2e-69 232.1 36.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|330507781|ref|YP_004384209.1| - 1e-22 80.3 0.2 2.5e-22 79.0 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|330507781|ref|YP_004384209.1| - 2.7e-14 52.5 0.1 1.7e-13 49.9 0.0 2.5 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_2 PF03446.10 gi|330507781|ref|YP_004384209.1| - 0.013 15.3 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Na_H_Exchanger PF00999.16 gi|330507782|ref|YP_004384210.1| - 8.9e-55 185.7 43.5 1.1e-54 185.4 30.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|330507782|ref|YP_004384210.1| - 1.8e-10 40.2 0.0 3.2e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 TrkA-C domain Na_Ca_ex PF01699.19 gi|330507783|ref|YP_004384211.1| - 4e-51 172.2 28.0 4.6e-29 100.8 4.2 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein OrfB_IS605 PF01385.14 gi|330507784|ref|YP_004384212.1| - 2.8e-40 138.1 0.9 4.5e-40 137.4 0.0 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330507784|ref|YP_004384212.1| - 8.3e-24 83.0 0.0 1.9e-23 81.8 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330507784|ref|YP_004384212.1| - 4.8e-20 70.6 2.5 9.7e-20 69.6 1.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|330507784|ref|YP_004384212.1| - 0.0042 16.8 0.1 0.0078 16.0 0.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|330507784|ref|YP_004384212.1| - 0.11 11.7 1.2 1 8.7 0.0 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding RecR PF02132.10 gi|330507784|ref|YP_004384212.1| - 0.55 9.7 2.9 6.4 6.2 0.1 3.0 2 1 1 3 3 3 0 RecR protein Radical_SAM PF04055.16 gi|330507785|ref|YP_004384213.1| - 7e-15 55.5 0.0 1e-14 55.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SpoA PF01052.15 gi|330507785|ref|YP_004384213.1| - 0.1 12.2 0.0 0.41 10.2 0.0 1.9 2 0 0 2 2 2 0 Surface presentation of antigens (SPOA) DUF1703 PF08011.6 gi|330507786|ref|YP_004384214.1| - 0.064 12.9 0.1 0.092 12.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1703) Catalase-rel PF06628.7 gi|330507787|ref|YP_004384215.1| - 0.0041 16.9 0.0 0.0053 16.5 0.0 1.2 1 0 0 1 1 1 1 Catalase-related immune-responsive N6_N4_Mtase PF01555.13 gi|330507788|ref|YP_004384216.1| - 3.2e-38 131.5 0.1 3.8e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|330507788|ref|YP_004384216.1| - 2.4e-06 27.5 0.0 0.0053 16.7 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|330507788|ref|YP_004384216.1| - 0.016 14.7 0.0 3.4 7.2 0.0 2.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 N6_Mtase PF02384.11 gi|330507788|ref|YP_004384216.1| - 0.14 11.2 0.0 4.4 6.2 0.0 2.1 2 0 0 2 2 2 0 N-6 DNA Methylase PEMT PF04191.8 gi|330507789|ref|YP_004384217.1| - 1.8e-14 53.7 1.1 1.8e-14 53.7 0.7 2.4 3 0 0 3 3 3 1 Phospholipid methyltransferase ICMT PF04140.9 gi|330507789|ref|YP_004384217.1| - 1.8e-09 37.6 0.8 1.8e-09 37.6 0.6 2.3 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family WBP-1 PF11669.3 gi|330507789|ref|YP_004384217.1| - 0.0064 16.5 0.1 0.014 15.4 0.1 1.5 1 0 0 1 1 1 1 WW domain-binding protein 1 ERG4_ERG24 PF01222.12 gi|330507789|ref|YP_004384217.1| - 0.014 13.9 0.3 0.014 13.9 0.2 2.2 1 1 1 2 2 2 0 Ergosterol biosynthesis ERG4/ERG24 family DUF1345 PF07077.6 gi|330507789|ref|YP_004384217.1| - 0.021 14.3 0.9 0.032 13.7 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1345) 60KD_IMP PF02096.15 gi|330507789|ref|YP_004384217.1| - 0.41 10.2 3.0 0.48 10.0 0.1 2.1 2 0 0 2 2 2 0 60Kd inner membrane protein Vps55 PF04133.9 gi|330507789|ref|YP_004384217.1| - 2.5 7.8 7.5 0.11 12.2 1.0 1.9 2 0 0 2 2 2 0 Vacuolar protein sorting 55 LTD PF00932.14 gi|330507790|ref|YP_004384218.1| - 4.2e-15 55.8 0.2 8.5e-14 51.6 0.1 2.0 2 0 0 2 2 2 1 Lamin Tail Domain Lipase_GDSL_2 PF13472.1 gi|330507791|ref|YP_004384219.1| - 7.9e-31 107.5 0.0 9.4e-31 107.3 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|330507791|ref|YP_004384219.1| - 1.5e-22 80.6 0.0 1.8e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.1 gi|330507791|ref|YP_004384219.1| - 3.1e-05 23.7 0.0 6.5e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Trp_syntA PF00290.15 gi|330507792|ref|YP_004384220.1| - 6.5e-80 267.3 0.0 8e-80 267.1 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|330507792|ref|YP_004384220.1| - 0.00031 20.0 0.0 0.0025 17.0 0.0 2.0 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|330507792|ref|YP_004384220.1| - 0.00065 19.0 0.1 0.0013 18.0 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.9 gi|330507792|ref|YP_004384220.1| - 0.022 13.7 0.1 0.078 11.9 0.0 1.9 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|330507792|ref|YP_004384220.1| - 0.066 12.2 0.2 0.11 11.4 0.2 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PALP PF00291.20 gi|330507793|ref|YP_004384221.1| - 3.5e-35 121.6 0.1 5.1e-35 121.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Exonuc_VII_S PF02609.11 gi|330507794|ref|YP_004384222.1| - 1.1e-18 66.7 5.6 1.3e-18 66.4 3.8 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit GTPase_Cys_C PF12631.2 gi|330507794|ref|YP_004384222.1| - 0.015 15.7 0.0 0.024 15.0 0.0 1.4 1 1 0 1 1 1 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE H-kinase_dim PF02895.9 gi|330507794|ref|YP_004384222.1| - 0.033 14.5 0.4 0.092 13.0 0.1 1.8 2 0 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain CENP-F_leu_zip PF10473.4 gi|330507794|ref|YP_004384222.1| - 0.15 11.9 2.8 0.18 11.6 1.9 1.3 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Exonuc_VII_L PF02601.10 gi|330507795|ref|YP_004384223.1| - 5.9e-71 239.2 0.0 4.5e-63 213.3 0.0 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|330507795|ref|YP_004384223.1| - 1.7e-27 95.1 0.0 3.1e-27 94.3 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|330507795|ref|YP_004384223.1| - 3.5e-06 26.7 0.0 9.9e-06 25.3 0.0 1.7 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DUF4539 PF15072.1 gi|330507795|ref|YP_004384223.1| - 0.0035 16.9 0.0 0.0071 16.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4539) Unstab_antitox PF09720.5 gi|330507795|ref|YP_004384223.1| - 0.44 10.2 3.1 3.9 7.2 0.2 2.9 2 1 1 3 3 3 0 Putative addiction module component CbiM PF01891.11 gi|330507796|ref|YP_004384224.1| - 7.9e-56 188.8 22.0 9.1e-56 188.7 15.2 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region Pex2_Pex12 PF04757.9 gi|330507796|ref|YP_004384224.1| - 0.08 12.3 0.5 0.13 11.6 0.3 1.3 1 0 0 1 1 1 0 Pex2 / Pex12 amino terminal region CbiN PF02553.10 gi|330507797|ref|YP_004384225.1| - 4.9e-26 90.5 0.4 6.4e-26 90.1 0.3 1.2 1 0 0 1 1 1 1 Cobalt transport protein component CbiN PgpA PF04608.8 gi|330507797|ref|YP_004384225.1| - 0.1 12.4 0.2 0.12 12.1 0.1 1.2 1 1 0 1 1 1 0 Phosphatidylglycerophosphatase A PsbI PF02532.9 gi|330507797|ref|YP_004384225.1| - 0.3 10.7 1.1 0.45 10.1 0.7 1.3 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) CbiQ PF02361.11 gi|330507798|ref|YP_004384226.1| - 2.6e-31 108.9 13.7 3.7e-31 108.4 9.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|330507799|ref|YP_004384227.1| - 5.1e-31 107.8 0.0 1.1e-30 106.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|330507799|ref|YP_004384227.1| - 1.1e-19 71.4 0.0 2e-12 47.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330507799|ref|YP_004384227.1| - 1.5e-07 30.8 0.0 3.6e-05 23.1 0.0 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|330507799|ref|YP_004384227.1| - 0.00017 20.8 0.0 0.0098 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|330507799|ref|YP_004384227.1| - 0.00031 20.2 0.0 0.00074 18.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|330507799|ref|YP_004384227.1| - 0.00042 20.1 0.1 0.0039 17.0 0.1 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|330507799|ref|YP_004384227.1| - 0.0041 15.6 0.0 0.73 8.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain MukB PF04310.7 gi|330507799|ref|YP_004384227.1| - 0.024 13.9 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_23 PF13476.1 gi|330507799|ref|YP_004384227.1| - 0.024 14.9 0.0 0.043 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|330507799|ref|YP_004384227.1| - 0.071 13.0 0.0 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|330507799|ref|YP_004384227.1| - 0.076 12.2 0.0 0.17 11.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|330507799|ref|YP_004384227.1| - 0.22 10.8 0.8 0.58 9.5 0.2 1.8 1 1 0 2 2 2 0 AAA-like domain AIRC PF00731.15 gi|330507800|ref|YP_004384228.1| - 3.1e-21 75.2 2.0 4.5e-21 74.6 1.4 1.3 1 0 0 1 1 1 1 AIR carboxylase DUF2089 PF09862.4 gi|330507800|ref|YP_004384228.1| - 0.072 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) PHP PF02811.14 gi|330507801|ref|YP_004384229.1| - 0.005 16.6 0.0 0.011 15.5 0.0 1.6 2 0 0 2 2 2 1 PHP domain PHP_C PF13263.1 gi|330507801|ref|YP_004384229.1| - 0.014 14.9 0.1 0.034 13.6 0.0 1.7 1 0 0 1 1 1 0 PHP-associated Glycos_transf_2 PF00535.21 gi|330507803|ref|YP_004384231.1| - 4e-56 189.3 2.2 7.6e-30 103.8 0.1 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330507803|ref|YP_004384231.1| - 1.1e-33 116.9 0.0 4.4e-16 59.3 0.0 2.5 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|330507803|ref|YP_004384231.1| - 1.1e-21 77.1 6.4 4e-11 42.5 1.8 3.1 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|330507803|ref|YP_004384231.1| - 5.3e-14 51.9 2.1 4.8e-10 39.0 0.0 3.2 2 1 1 3 3 3 2 Glycosyltransferase like family Glyco_trans_2_3 PF13632.1 gi|330507803|ref|YP_004384231.1| - 2.6e-12 46.8 0.1 1.3e-05 24.9 0.0 2.5 2 1 0 2 2 2 2 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.9 gi|330507803|ref|YP_004384231.1| - 0.00036 19.9 0.1 0.003 16.9 0.0 2.3 2 0 0 2 2 2 1 N-terminal domain of galactosyltransferase Glyco_transf_21 PF13506.1 gi|330507803|ref|YP_004384231.1| - 0.0049 16.1 0.0 0.15 11.3 0.0 2.5 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|330507804|ref|YP_004384232.1| - 4.1e-50 169.7 7.2 1.4e-26 93.1 1.4 3.1 3 0 0 3 3 3 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330507804|ref|YP_004384232.1| - 4e-27 95.5 0.0 2.5e-14 53.6 0.0 2.5 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.15 gi|330507804|ref|YP_004384232.1| - 1.5e-19 70.0 0.0 6.8e-19 67.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Methyltransf_11 PF08241.7 gi|330507804|ref|YP_004384232.1| - 1.1e-09 38.6 0.0 4.2e-08 33.5 0.0 3.0 3 0 0 3 3 3 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330507804|ref|YP_004384232.1| - 4e-08 32.6 0.0 8.6e-08 31.5 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Glyco_trans_1_4 PF13692.1 gi|330507804|ref|YP_004384232.1| - 1e-07 32.2 0.0 3.5e-07 30.4 0.0 2.0 2 0 0 2 2 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|330507804|ref|YP_004384232.1| - 2e-07 31.1 0.0 6.2e-07 29.5 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_31 PF13847.1 gi|330507804|ref|YP_004384232.1| - 1e-06 28.4 2.8 1.3e-05 24.8 0.0 3.1 3 0 0 3 3 3 1 Methyltransferase domain Glyco_trans_2_3 PF13632.1 gi|330507804|ref|YP_004384232.1| - 9.2e-05 22.2 0.0 0.00075 19.2 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|330507804|ref|YP_004384232.1| - 0.00039 19.7 0.0 0.45 9.7 0.0 2.5 2 1 0 2 2 2 2 Glycosyl transferase family 21 Methyltransf_12 PF08242.7 gi|330507804|ref|YP_004384232.1| - 0.002 18.5 0.1 0.016 15.6 0.0 2.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltrn_RNA_2 PF04013.7 gi|330507804|ref|YP_004384232.1| - 0.0082 15.7 0.1 0.022 14.3 0.0 1.6 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Methyltransf_8 PF05148.10 gi|330507804|ref|YP_004384232.1| - 0.0098 15.5 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_23 PF13489.1 gi|330507804|ref|YP_004384232.1| - 0.01 15.5 0.0 0.036 13.7 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507804|ref|YP_004384232.1| - 0.021 15.2 0.0 0.36 11.2 0.0 3.0 3 0 0 3 3 2 0 Methyltransferase domain PMT_2 PF13231.1 gi|330507805|ref|YP_004384233.1| - 4.6e-19 68.8 21.2 4.6e-19 68.8 14.7 3.1 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|330507805|ref|YP_004384233.1| - 2.9e-13 49.7 22.2 2.9e-13 49.7 15.4 2.7 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase TH1 PF04858.8 gi|330507805|ref|YP_004384233.1| - 0.065 11.3 0.4 0.11 10.5 0.1 1.5 1 1 1 2 2 2 0 TH1 protein Glycos_transf_2 PF00535.21 gi|330507806|ref|YP_004384234.1| - 9.2e-34 116.5 0.7 1.4e-33 115.9 0.5 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|330507806|ref|YP_004384234.1| - 2.6e-11 43.1 0.1 3.7e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|330507806|ref|YP_004384234.1| - 4.5e-08 33.1 0.0 6.3e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|330507806|ref|YP_004384234.1| - 0.00064 19.0 0.0 0.0021 17.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|330507806|ref|YP_004384234.1| - 0.033 14.4 0.0 0.079 13.2 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 2 Epimerase PF01370.16 gi|330507807|ref|YP_004384235.1| - 8e-63 212.0 0.0 9.7e-63 211.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|330507807|ref|YP_004384235.1| - 3.9e-32 111.0 0.0 5.2e-32 110.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|330507807|ref|YP_004384235.1| - 9.5e-20 70.6 0.0 6.7e-19 67.8 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|330507807|ref|YP_004384235.1| - 1.4e-16 60.1 0.0 2.2e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|330507807|ref|YP_004384235.1| - 9.1e-14 51.8 0.0 2.4e-13 50.4 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|330507807|ref|YP_004384235.1| - 5.2e-13 48.4 0.0 1.5e-12 46.9 0.0 1.8 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.8 gi|330507807|ref|YP_004384235.1| - 1.5e-10 40.7 0.0 2.7e-10 39.9 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|330507807|ref|YP_004384235.1| - 2.4e-07 30.7 0.0 4.3e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|330507807|ref|YP_004384235.1| - 0.00028 20.7 0.1 0.00055 19.8 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit KR PF08659.5 gi|330507807|ref|YP_004384235.1| - 0.063 12.9 0.0 0.13 11.9 0.0 1.5 1 1 0 1 1 1 0 KR domain Methyltransf_31 PF13847.1 gi|330507808|ref|YP_004384236.1| - 8.7e-15 54.6 0.0 1.3e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507808|ref|YP_004384236.1| - 3.5e-10 40.2 0.0 5.5e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507808|ref|YP_004384236.1| - 4.7e-10 39.7 0.0 7.9e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507808|ref|YP_004384236.1| - 5.8e-10 39.5 0.0 9.2e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330507808|ref|YP_004384236.1| - 1.3e-09 38.0 0.0 1.8e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330507808|ref|YP_004384236.1| - 3.1e-09 37.4 0.0 5.1e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330507808|ref|YP_004384236.1| - 2.8e-06 26.8 0.0 4.2e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|330507808|ref|YP_004384236.1| - 4e-05 23.6 0.0 0.00019 21.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_5 PF01795.14 gi|330507808|ref|YP_004384236.1| - 0.0013 18.0 0.0 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 MraW methylase family Methyltransf_15 PF09445.5 gi|330507808|ref|YP_004384236.1| - 0.0043 16.6 0.0 0.0057 16.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_3 PF01596.12 gi|330507808|ref|YP_004384236.1| - 0.011 14.8 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_4 PF02390.12 gi|330507808|ref|YP_004384236.1| - 0.018 14.0 0.0 0.027 13.5 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase RrnaAD PF00398.15 gi|330507808|ref|YP_004384236.1| - 0.018 14.0 0.0 0.024 13.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_2 PF00891.13 gi|330507808|ref|YP_004384236.1| - 0.046 12.9 0.0 0.06 12.5 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_32 PF13679.1 gi|330507808|ref|YP_004384236.1| - 0.06 13.0 0.0 0.091 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330507808|ref|YP_004384236.1| - 0.092 11.8 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family rve_2 PF13333.1 gi|330507809|ref|YP_004384237.1| - 0.00022 21.2 0.2 0.00027 20.9 0.2 1.1 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330507809|ref|YP_004384237.1| - 0.0035 16.8 0.1 0.0043 16.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain Methyltransf_31 PF13847.1 gi|330507810|ref|YP_004384238.1| - 5.1e-21 74.8 0.1 5.9e-21 74.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330507810|ref|YP_004384238.1| - 4.8e-19 68.6 0.0 6.7e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507810|ref|YP_004384238.1| - 1.4e-17 63.9 0.2 2e-17 63.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507810|ref|YP_004384238.1| - 1.3e-15 57.6 0.3 2.1e-15 57.0 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330507810|ref|YP_004384238.1| - 1.3e-15 57.9 0.4 2e-15 57.3 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507810|ref|YP_004384238.1| - 4.5e-13 49.4 0.2 7.5e-13 48.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330507810|ref|YP_004384238.1| - 3.9e-10 39.2 0.0 6.8e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|330507810|ref|YP_004384238.1| - 9.6e-10 38.0 0.1 1.4e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|330507810|ref|YP_004384238.1| - 9.7e-10 38.5 0.3 2.3e-09 37.3 0.2 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|330507810|ref|YP_004384238.1| - 1.2e-09 37.6 0.0 1.8e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|330507810|ref|YP_004384238.1| - 8.5e-09 34.8 0.0 1.2e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|330507810|ref|YP_004384238.1| - 4.2e-07 29.7 0.1 8.4e-07 28.7 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain NodS PF05401.6 gi|330507810|ref|YP_004384238.1| - 8.5e-07 28.5 0.0 1.2e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) FmrO PF07091.6 gi|330507810|ref|YP_004384238.1| - 2.9e-05 23.1 0.0 3.7e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) DREV PF05219.7 gi|330507810|ref|YP_004384238.1| - 3.4e-05 22.8 0.0 5e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase MetW PF07021.7 gi|330507810|ref|YP_004384238.1| - 0.00037 19.9 0.1 0.00057 19.3 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|330507810|ref|YP_004384238.1| - 0.00049 19.7 0.1 0.01 15.4 0.1 2.6 1 1 0 1 1 1 1 Hypothetical methyltransferase PrmA PF06325.8 gi|330507810|ref|YP_004384238.1| - 0.00079 18.6 0.1 0.0011 18.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_9 PF08003.6 gi|330507810|ref|YP_004384238.1| - 0.00099 17.8 0.0 0.0012 17.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) N2227 PF07942.7 gi|330507810|ref|YP_004384238.1| - 0.0013 17.7 0.0 0.0041 16.1 0.0 1.7 1 1 1 2 2 2 1 N2227-like protein MethyltransfD12 PF02086.10 gi|330507810|ref|YP_004384238.1| - 0.0064 15.9 0.1 0.012 15.1 0.0 1.4 2 0 0 2 2 1 1 D12 class N6 adenine-specific DNA methyltransferase RrnaAD PF00398.15 gi|330507810|ref|YP_004384238.1| - 0.025 13.5 0.0 0.042 12.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.6 gi|330507810|ref|YP_004384238.1| - 0.026 13.2 0.0 0.039 12.6 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF43 PF01861.11 gi|330507810|ref|YP_004384238.1| - 0.029 13.3 0.0 0.044 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF43 AdoMet_MTase PF07757.8 gi|330507810|ref|YP_004384238.1| - 0.042 13.9 0.0 0.091 12.8 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase TPMT PF05724.6 gi|330507810|ref|YP_004384238.1| - 0.048 13.1 0.0 0.065 12.6 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_20 PF12147.3 gi|330507810|ref|YP_004384238.1| - 0.048 12.5 0.1 0.08 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase UPF0020 PF01170.13 gi|330507810|ref|YP_004384238.1| - 0.063 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 GidB PF02527.10 gi|330507810|ref|YP_004384238.1| - 0.076 12.1 0.1 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G CheR PF01739.13 gi|330507810|ref|YP_004384238.1| - 0.14 11.3 0.1 4.8 6.4 0.0 2.4 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain PCMT PF01135.14 gi|330507810|ref|YP_004384238.1| - 0.17 11.4 0.0 0.32 10.4 0.0 1.6 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0104 PF03706.8 gi|330507811|ref|YP_004384239.1| - 3.1e-29 102.1 26.8 3.8e-29 101.8 18.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) rve PF00665.21 gi|330507812|ref|YP_004384240.1| - 1.4e-23 83.2 0.0 2.2e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330507812|ref|YP_004384240.1| - 1.6e-18 65.9 0.2 3.6e-18 64.8 0.2 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.1 gi|330507812|ref|YP_004384240.1| - 4.1e-17 61.9 0.3 1.5e-16 60.1 0.1 1.9 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.1 gi|330507812|ref|YP_004384240.1| - 3.9e-09 36.4 2.3 6.8e-09 35.6 1.1 1.8 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.1 gi|330507812|ref|YP_004384240.1| - 1.3e-06 28.4 0.4 2.1e-06 27.7 0.3 1.3 1 0 0 1 1 1 1 DDE domain HTH_Tnp_Tc3_2 PF01498.13 gi|330507812|ref|YP_004384240.1| - 0.14 12.2 0.4 0.44 10.6 0.0 1.9 2 0 0 2 2 2 0 Transposase HTH_Tnp_1 PF01527.15 gi|330507813|ref|YP_004384241.1| - 9.6e-12 44.6 0.1 1.3e-11 44.2 0.1 1.4 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|330507813|ref|YP_004384241.1| - 0.00019 20.9 0.0 0.00041 19.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330507813|ref|YP_004384241.1| - 0.0016 18.3 0.0 0.0033 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|330507813|ref|YP_004384241.1| - 0.0021 18.1 0.1 0.0026 17.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|330507813|ref|YP_004384241.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain GnsAB PF08178.6 gi|330507813|ref|YP_004384241.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 GnsA/GnsB family Glyco_hydro_26 PF02156.10 gi|330507814|ref|YP_004384242.1| - 3.8e-06 26.6 2.4 7.8e-06 25.5 1.6 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 PB1-F2 PF11986.3 gi|330507814|ref|YP_004384242.1| - 0.59 10.2 2.3 25 4.9 0.0 3.6 4 0 0 4 4 4 0 Influenza A Proapoptotic protein SBBP PF06739.6 gi|330507815|ref|YP_004384243.1| - 7e-64 211.3 69.9 1.9e-11 43.5 2.2 7.8 8 0 0 8 8 8 7 Beta-propeller repeat NHL PF01436.16 gi|330507815|ref|YP_004384243.1| - 0.00033 20.4 9.9 0.96 9.5 0.0 5.8 6 0 0 6 6 6 2 NHL repeat PKD PF00801.15 gi|330507815|ref|YP_004384243.1| - 0.0004 20.0 2.1 0.0004 20.0 1.4 3.2 3 0 0 3 3 3 1 PKD domain Strep_his_triad PF04270.8 gi|330507815|ref|YP_004384243.1| - 0.0037 16.9 1.2 26 4.6 0.0 4.6 5 0 0 5 5 5 1 Streptococcal histidine triad protein PB1-F2 PF11986.3 gi|330507815|ref|YP_004384243.1| - 0.083 12.9 1.8 36 4.4 0.0 3.9 4 0 0 4 4 4 0 Influenza A Proapoptotic protein UDPG_MGDP_dh_N PF03721.9 gi|330507816|ref|YP_004384244.1| - 2.7e-52 176.8 0.0 8.2e-52 175.2 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|330507816|ref|YP_004384244.1| - 6.2e-37 125.6 0.0 1.1e-36 124.8 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|330507816|ref|YP_004384244.1| - 1.5e-26 92.6 0.0 6.4e-26 90.5 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DAO PF01266.19 gi|330507816|ref|YP_004384244.1| - 0.00025 20.0 0.1 0.0003 19.8 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|330507816|ref|YP_004384244.1| - 0.0011 19.3 0.1 0.0033 17.8 0.1 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|330507816|ref|YP_004384244.1| - 0.0023 17.5 0.1 0.0053 16.4 0.0 1.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|330507816|ref|YP_004384244.1| - 0.02 13.7 0.1 0.037 12.8 0.1 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|330507816|ref|YP_004384244.1| - 0.038 14.0 0.6 0.21 11.6 0.1 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|330507816|ref|YP_004384244.1| - 0.11 11.9 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NTP_transferase PF00483.18 gi|330507817|ref|YP_004384245.1| - 8.3e-39 133.3 0.0 9.7e-39 133.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|330507817|ref|YP_004384245.1| - 3.2e-10 40.2 0.0 3.6e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.21 gi|330507817|ref|YP_004384245.1| - 0.0039 16.8 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.14 gi|330507817|ref|YP_004384245.1| - 0.005 16.3 0.0 0.059 12.8 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_1 PF00534.15 gi|330507819|ref|YP_004384247.1| - 7.4e-21 74.3 0.0 8.5e-21 74.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330507819|ref|YP_004384247.1| - 1.1e-09 38.5 0.0 1.4e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|330507819|ref|YP_004384247.1| - 4.8e-05 23.5 0.0 6.4e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_3 PF13528.1 gi|330507819|ref|YP_004384247.1| - 0.0021 17.3 0.0 0.0029 16.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 1 ABC2_membrane PF01061.19 gi|330507820|ref|YP_004384248.1| - 4.2e-25 88.1 33.7 4.2e-25 88.1 23.4 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330507820|ref|YP_004384248.1| - 9e-05 21.6 28.8 9e-05 21.6 20.0 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF350 PF03994.9 gi|330507820|ref|YP_004384248.1| - 0.1 12.3 0.2 0.1 12.3 0.1 2.8 3 0 0 3 3 3 0 Domain of Unknown Function (DUF350) ABC_tran PF00005.22 gi|330507821|ref|YP_004384249.1| - 2.3e-24 86.2 0.1 2.1e-23 83.1 0.1 2.1 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330507821|ref|YP_004384249.1| - 2.3e-13 50.7 0.4 4.6e-06 26.8 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|330507821|ref|YP_004384249.1| - 4e-05 23.0 0.0 8.5e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|330507821|ref|YP_004384249.1| - 0.00011 21.9 0.2 0.2 11.3 0.1 2.4 2 0 0 2 2 2 2 NTPase AAA_23 PF13476.1 gi|330507821|ref|YP_004384249.1| - 0.00064 20.0 3.0 0.00096 19.5 2.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|330507821|ref|YP_004384249.1| - 0.00099 18.2 1.4 0.028 13.4 0.4 2.1 1 1 0 2 2 2 1 AAA ATPase domain T2SE PF00437.15 gi|330507821|ref|YP_004384249.1| - 0.0011 17.8 0.1 0.23 10.2 0.0 2.2 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA PF00004.24 gi|330507821|ref|YP_004384249.1| - 0.003 17.7 0.0 0.013 15.6 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|330507821|ref|YP_004384249.1| - 0.0048 16.3 0.7 0.57 9.5 0.1 2.3 2 0 0 2 2 2 1 AAA-like domain SMC_N PF02463.14 gi|330507821|ref|YP_004384249.1| - 0.0066 15.7 0.5 0.024 13.8 0.1 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|330507821|ref|YP_004384249.1| - 0.0083 15.7 0.0 0.031 13.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|330507821|ref|YP_004384249.1| - 0.0093 15.6 0.3 0.028 14.1 0.1 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|330507821|ref|YP_004384249.1| - 0.049 13.7 0.1 0.12 12.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|330507821|ref|YP_004384249.1| - 0.049 14.4 0.1 0.088 13.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|330507821|ref|YP_004384249.1| - 0.066 12.7 0.3 0.18 11.3 0.1 1.7 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|330507821|ref|YP_004384249.1| - 0.074 12.7 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|330507821|ref|YP_004384249.1| - 0.074 12.4 0.0 0.29 10.5 0.0 2.0 1 1 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|330507821|ref|YP_004384249.1| - 0.075 12.6 0.3 0.57 9.7 0.1 2.0 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_16 PF13191.1 gi|330507821|ref|YP_004384249.1| - 0.081 12.9 0.0 0.1 12.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|330507821|ref|YP_004384249.1| - 0.09 13.0 0.7 0.22 11.8 0.3 2.1 2 1 0 2 2 1 0 AAA domain DUF258 PF03193.11 gi|330507821|ref|YP_004384249.1| - 0.11 11.7 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|330507821|ref|YP_004384249.1| - 0.14 12.6 0.1 0.27 11.7 0.1 1.4 1 0 0 1 1 1 0 Miro-like protein T4SS-DNA_transf PF02534.9 gi|330507821|ref|YP_004384249.1| - 0.15 10.6 0.0 11 4.4 0.0 2.0 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer B12-binding PF02310.14 gi|330507822|ref|YP_004384250.1| - 1.6e-26 92.5 0.0 8.4e-26 90.2 0.0 2.1 2 1 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.16 gi|330507822|ref|YP_004384250.1| - 8.2e-19 68.3 0.0 2.8e-18 66.6 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily UbiA PF01040.13 gi|330507823|ref|YP_004384251.1| - 3.8e-25 88.5 25.2 3.8e-25 88.5 17.5 1.7 1 1 0 1 1 1 1 UbiA prenyltransferase family YebO PF13974.1 gi|330507823|ref|YP_004384251.1| - 9.3 6.1 8.3 1.6 8.5 0.7 3.0 3 0 0 3 3 3 0 YebO-like protein DEDD_Tnp_IS110 PF01548.12 gi|330507824|ref|YP_004384252.1| - 1.6e-29 102.4 0.0 1.1e-28 99.7 0.0 2.1 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.11 gi|330507824|ref|YP_004384252.1| - 2.2e-22 78.9 0.2 5.7e-22 77.6 0.0 1.8 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family SET_assoc PF11767.3 gi|330507824|ref|YP_004384252.1| - 0.0008 18.6 0.0 0.0019 17.4 0.0 1.6 1 0 0 1 1 1 1 Histone lysine methyltransferase SET associated Ish1 PF10281.4 gi|330507824|ref|YP_004384252.1| - 0.032 14.3 0.2 0.082 12.9 0.1 1.8 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein Hjc PF01870.13 gi|330507824|ref|YP_004384252.1| - 0.069 12.7 0.1 0.24 11.0 0.1 1.9 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) HHH_5 PF14520.1 gi|330507824|ref|YP_004384252.1| - 0.09 12.9 0.0 0.54 10.4 0.0 2.4 2 1 0 2 2 2 0 Helix-hairpin-helix domain PHP_C PF13263.1 gi|330507825|ref|YP_004384253.1| - 1.8e-10 40.1 0.0 3.2e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|330507825|ref|YP_004384253.1| - 1.8e-07 31.1 0.0 3.8e-07 30.0 0.0 1.7 1 1 0 1 1 1 1 PHP domain Methyltransf_23 PF13489.1 gi|330507827|ref|YP_004384255.1| - 3.3e-13 49.6 0.0 6.1e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507827|ref|YP_004384255.1| - 1.4e-10 41.4 0.0 3.2e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330507827|ref|YP_004384255.1| - 6.7e-08 32.2 0.0 1.3e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507827|ref|YP_004384255.1| - 2.8e-05 24.5 0.0 6.8e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507827|ref|YP_004384255.1| - 0.0061 16.8 0.0 0.014 15.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|330507827|ref|YP_004384255.1| - 0.012 14.4 0.0 0.023 13.6 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase Mucin PF01456.12 gi|330507828|ref|YP_004384256.1| - 0.0037 17.0 0.2 0.0046 16.7 0.1 1.1 1 0 0 1 1 1 1 Mucin-like glycoprotein MetW PF07021.7 gi|330507830|ref|YP_004384258.1| - 8.1e-13 48.1 0.3 1.9e-12 46.9 0.2 1.6 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.1 gi|330507830|ref|YP_004384258.1| - 3.1e-12 46.5 0.1 6.7e-12 45.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330507830|ref|YP_004384258.1| - 9.7e-09 35.6 0.0 2.1e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330507830|ref|YP_004384258.1| - 6.3e-08 32.3 0.3 1.4e-07 31.1 0.2 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330507830|ref|YP_004384258.1| - 1.3e-06 28.9 2.5 2e-06 28.3 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507830|ref|YP_004384258.1| - 3.9e-06 27.2 0.2 3.9e-06 27.2 0.1 2.8 3 1 0 3 3 3 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507830|ref|YP_004384258.1| - 7.1e-06 26.3 0.0 1.9e-05 24.9 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330507830|ref|YP_004384258.1| - 0.00017 21.5 0.0 0.00028 20.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Apolipoprotein PF01442.13 gi|330507830|ref|YP_004384258.1| - 0.0055 16.2 1.1 0.0093 15.4 0.7 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Methyltransf_4 PF02390.12 gi|330507830|ref|YP_004384258.1| - 0.0089 15.0 0.0 0.022 13.8 0.0 1.6 1 0 0 1 1 1 1 Putative methyltransferase AdoMet_MTase PF07757.8 gi|330507830|ref|YP_004384258.1| - 0.009 16.1 0.0 0.024 14.7 0.0 1.8 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase PCI_Csn8 PF10075.4 gi|330507830|ref|YP_004384258.1| - 0.015 15.0 0.8 0.067 12.9 0.2 2.1 1 1 1 2 2 2 0 COP9 signalosome, subunit CSN8 PLC-beta_C PF08703.5 gi|330507830|ref|YP_004384258.1| - 0.018 14.7 0.7 0.13 11.9 0.1 2.3 1 1 1 2 2 2 0 PLC-beta C terminal Methyltransf_32 PF13679.1 gi|330507830|ref|YP_004384258.1| - 0.023 14.3 1.1 0.09 12.4 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase domain FtsJ PF01728.14 gi|330507830|ref|YP_004384258.1| - 0.024 14.6 0.5 0.048 13.6 0.0 1.7 2 0 0 2 2 2 0 FtsJ-like methyltransferase Prominin PF05478.6 gi|330507830|ref|YP_004384258.1| - 0.045 11.2 3.1 0.065 10.7 2.2 1.2 1 0 0 1 1 1 0 Prominin HN PF00423.14 gi|330507830|ref|YP_004384258.1| - 0.44 8.7 4.6 0.72 8.0 3.2 1.2 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase Endotoxin_N PF03945.9 gi|330507830|ref|YP_004384258.1| - 5.1 6.4 8.3 0.52 9.6 0.9 2.2 2 0 0 2 2 2 0 delta endotoxin, N-terminal domain ARGLU PF15346.1 gi|330507830|ref|YP_004384258.1| - 6 6.6 10.5 3.5 7.4 3.0 3.0 2 1 0 2 2 2 0 Arginine and glutamate-rich 1 DUF445 PF04286.7 gi|330507830|ref|YP_004384258.1| - 6.5 6.1 10.9 11 5.4 7.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF445) Glycos_transf_1 PF00534.15 gi|330507831|ref|YP_004384259.1| - 6.2e-28 97.3 0.0 9.4e-28 96.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330507831|ref|YP_004384259.1| - 3.5e-12 46.6 0.0 5.3e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|330507831|ref|YP_004384259.1| - 7e-05 23.0 0.0 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|330507832|ref|YP_004384260.1| - 9.9e-13 47.8 0.0 1.9e-12 46.9 0.0 1.5 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330507832|ref|YP_004384260.1| - 3.5e-11 43.3 0.0 1.9e-10 40.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 rve PF00665.21 gi|330507833|ref|YP_004384261.1| - 3.6e-15 56.1 0.0 6.4e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_29 PF13551.1 gi|330507833|ref|YP_004384261.1| - 7.7e-09 35.6 0.8 1.4e-08 34.8 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn helix rve_3 PF13683.1 gi|330507833|ref|YP_004384261.1| - 4.8e-06 26.0 0.8 4.4e-05 22.9 0.1 2.8 2 1 0 2 2 2 1 Integrase core domain HTH_23 PF13384.1 gi|330507833|ref|YP_004384261.1| - 7.9e-06 25.3 0.2 1.8e-05 24.1 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_21 PF13276.1 gi|330507833|ref|YP_004384261.1| - 8e-06 25.7 1.5 8e-06 25.7 1.0 3.8 4 1 1 5 5 5 1 HTH-like domain HTH_32 PF13565.1 gi|330507833|ref|YP_004384261.1| - 0.00014 22.5 0.2 0.00014 22.5 0.1 2.1 3 0 0 3 3 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330507833|ref|YP_004384261.1| - 0.00045 20.1 0.4 0.00045 20.1 0.3 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|330507833|ref|YP_004384261.1| - 0.0014 18.1 0.2 0.0026 17.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_Tnp_ISL3 PF13542.1 gi|330507833|ref|YP_004384261.1| - 0.019 14.1 0.0 0.038 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.1 gi|330507833|ref|YP_004384261.1| - 0.069 12.5 0.1 0.17 11.3 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NDUFA12 PF05071.11 gi|330507833|ref|YP_004384261.1| - 0.079 13.4 0.4 0.2 12.1 0.3 1.6 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase subunit NDUFA12 Sigma70_r4 PF04545.11 gi|330507833|ref|YP_004384261.1| - 0.27 10.5 2.3 0.27 10.5 0.4 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 Binary_toxB PF03495.9 gi|330507834|ref|YP_004384262.1| - 0.52 8.8 5.2 0.96 7.9 3.6 1.4 1 0 0 1 1 1 0 Clostridial binary toxin B/anthrax toxin PA rve_2 PF13333.1 gi|330507836|ref|YP_004384264.1| - 2.5e-05 24.2 0.3 3e-05 24.0 0.2 1.1 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330507836|ref|YP_004384264.1| - 0.00011 21.6 0.1 0.00014 21.2 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain PseudoU_synth_1 PF01416.15 gi|330507838|ref|YP_004384266.1| - 0.00064 20.1 0.0 0.55 10.6 0.0 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase HxlR PF01638.12 gi|330507839|ref|YP_004384267.1| - 0.027 14.0 0.1 0.078 12.6 0.0 1.7 1 1 1 2 2 2 0 HxlR-like helix-turn-helix CENP-F_leu_zip PF10473.4 gi|330507839|ref|YP_004384267.1| - 0.034 13.9 3.4 0.18 11.6 0.1 2.7 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 B3 PF02362.16 gi|330507839|ref|YP_004384267.1| - 0.038 13.6 1.7 0.69 9.5 0.1 2.3 1 1 1 2 2 2 0 B3 DNA binding domain DUF2383 PF09537.5 gi|330507839|ref|YP_004384267.1| - 0.044 14.0 0.2 0.23 11.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) IncA PF04156.9 gi|330507839|ref|YP_004384267.1| - 0.064 12.8 1.6 0.14 11.7 1.1 1.5 1 0 0 1 1 1 0 IncA protein HisKA_3 PF07730.8 gi|330507839|ref|YP_004384267.1| - 0.094 13.0 1.1 0.34 11.2 0.2 2.0 2 0 0 2 2 2 0 Histidine kinase DUF904 PF06005.7 gi|330507839|ref|YP_004384267.1| - 4.8 7.5 7.5 0.66 10.3 1.5 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF904) Glycos_transf_2 PF00535.21 gi|330507840|ref|YP_004384268.1| - 1.8e-23 83.0 3.9 4.1e-23 81.8 2.7 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|330507840|ref|YP_004384268.1| - 1.1e-21 77.0 0.4 2.5e-21 75.8 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_tranf_2_3 PF13641.1 gi|330507840|ref|YP_004384268.1| - 4.2e-18 65.9 0.0 8.3e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|330507840|ref|YP_004384268.1| - 1.2e-10 41.3 0.0 1.9e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_trans_1_4 PF13692.1 gi|330507840|ref|YP_004384268.1| - 1.9e-06 28.0 0.0 6.9e-06 26.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|330507840|ref|YP_004384268.1| - 5.1e-06 26.6 0.0 1.5e-05 25.1 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|330507840|ref|YP_004384268.1| - 2.1e-05 24.3 0.0 4.9e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_tranf_2_5 PF13712.1 gi|330507840|ref|YP_004384268.1| - 5e-05 22.6 1.8 0.00012 21.3 0.5 2.2 2 1 0 2 2 2 1 Glycosyltransferase like family Glyco_transf_21 PF13506.1 gi|330507840|ref|YP_004384268.1| - 0.00059 19.1 0.0 0.0012 18.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|330507840|ref|YP_004384268.1| - 0.0036 17.5 0.0 0.013 15.8 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 2 Epimerase PF01370.16 gi|330507841|ref|YP_004384269.1| - 2.6e-40 138.3 0.0 3.5e-40 137.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|330507841|ref|YP_004384269.1| - 2.1e-08 33.2 0.0 3e-07 29.4 0.0 2.2 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|330507841|ref|YP_004384269.1| - 4.8e-08 32.2 0.0 1.2e-07 30.8 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|330507841|ref|YP_004384269.1| - 1e-05 24.6 0.2 0.004 16.1 0.2 2.6 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|330507841|ref|YP_004384269.1| - 2.2e-05 24.5 0.0 3.6e-05 23.8 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|330507841|ref|YP_004384269.1| - 0.0009 19.2 0.1 0.0032 17.3 0.0 2.0 3 0 0 3 3 3 1 short chain dehydrogenase NmrA PF05368.8 gi|330507841|ref|YP_004384269.1| - 0.02 14.1 0.0 2 7.6 0.0 2.2 2 0 0 2 2 2 0 NmrA-like family KR PF08659.5 gi|330507841|ref|YP_004384269.1| - 0.025 14.2 0.0 0.075 12.6 0.0 1.7 2 0 0 2 2 2 0 KR domain DUF1836 PF08876.6 gi|330507841|ref|YP_004384269.1| - 0.06 13.1 0.1 0.27 11.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1836) Polysacc_synt_2 PF02719.10 gi|330507841|ref|YP_004384269.1| - 0.071 11.9 0.0 0.11 11.4 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein SseB_C PF14581.1 gi|330507844|ref|YP_004384272.1| - 0.063 13.1 0.0 0.094 12.5 0.0 1.3 1 1 0 1 1 1 0 SseB protein C-terminal domain KH_3 PF13014.1 gi|330507844|ref|YP_004384272.1| - 0.11 12.1 0.1 5.2 6.8 0.0 2.2 2 0 0 2 2 2 0 KH domain NAD_synthase PF02540.12 gi|330507845|ref|YP_004384273.1| - 4.5e-76 254.9 0.0 5.8e-76 254.5 0.0 1.1 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|330507845|ref|YP_004384273.1| - 0.00079 18.9 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|330507845|ref|YP_004384273.1| - 0.089 11.3 0.0 0.12 10.8 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase DUF4473 PF14747.1 gi|330507845|ref|YP_004384273.1| - 0.16 12.2 0.0 0.56 10.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) HTH_IclR PF09339.5 gi|330507846|ref|YP_004384274.1| - 0.00017 21.1 0.3 0.00053 19.5 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|330507846|ref|YP_004384274.1| - 0.0002 20.9 0.1 0.00047 19.7 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|330507846|ref|YP_004384274.1| - 0.0022 17.6 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|330507846|ref|YP_004384274.1| - 0.026 14.8 0.2 0.065 13.5 0.2 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|330507846|ref|YP_004384274.1| - 0.071 12.8 0.4 0.15 11.7 0.3 1.6 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.7 gi|330507846|ref|YP_004384274.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC SieB PF14163.1 gi|330507846|ref|YP_004384274.1| - 0.54 9.8 0.0 0.54 9.8 0.0 2.1 3 0 0 3 3 3 0 Superinfection exclusion protein B Rho_N PF07498.7 gi|330507847|ref|YP_004384275.1| - 2.6 7.8 5.9 9.8 6.0 0.0 3.4 4 0 0 4 4 4 0 Rho termination factor, N-terminal domain DUF3742 PF12553.3 gi|330507848|ref|YP_004384276.1| - 0.044 14.2 0.0 0.092 13.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) Peptidase_M22 PF00814.20 gi|330507849|ref|YP_004384277.1| - 4.7e-82 275.5 0.1 5.7e-82 275.2 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family CmcH_NodU PF02543.10 gi|330507849|ref|YP_004384277.1| - 0.029 13.4 0.0 0.041 13.0 0.0 1.2 1 0 0 1 1 1 0 Carbamoyltransferase GARS_A PF01071.14 gi|330507850|ref|YP_004384278.1| - 6.3e-58 195.5 0.0 9e-58 195.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|330507850|ref|YP_004384278.1| - 9.8e-28 96.5 0.0 1.9e-27 95.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|330507850|ref|YP_004384278.1| - 3.5e-25 87.9 0.7 7.5e-25 86.9 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|330507850|ref|YP_004384278.1| - 5.2e-07 29.5 0.1 9.3e-06 25.5 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330507850|ref|YP_004384278.1| - 6.1e-06 25.1 0.0 0.00012 20.9 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|330507850|ref|YP_004384278.1| - 0.026 14.3 0.0 2.8 7.7 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|330507850|ref|YP_004384278.1| - 0.041 13.2 0.0 0.1 11.9 0.0 1.6 2 0 0 2 2 2 0 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|330507850|ref|YP_004384278.1| - 0.11 11.7 0.0 0.72 9.0 0.0 2.2 2 1 1 3 3 3 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Gln-synt_C PF00120.19 gi|330507851|ref|YP_004384279.1| - 6e-93 310.7 0.0 7.3e-93 310.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|330507851|ref|YP_004384279.1| - 6.5e-30 102.5 0.0 1.1e-29 101.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain AP_endonuc_2 PF01261.19 gi|330507853|ref|YP_004384281.1| - 4.7e-31 107.7 0.0 6e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Response_reg PF00072.19 gi|330507854|ref|YP_004384282.1| - 3.1e-23 81.9 0.2 3.5e-23 81.7 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain His_biosynth PF00977.16 gi|330507854|ref|YP_004384282.1| - 0.038 13.2 0.0 0.047 12.9 0.0 1.1 1 0 0 1 1 1 0 Histidine biosynthesis protein Radical_SAM PF04055.16 gi|330507855|ref|YP_004384283.1| - 8.6e-25 87.8 0.0 3.3e-24 85.9 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|330507855|ref|YP_004384283.1| - 2.3e-18 66.0 0.0 9.6e-18 64.0 0.0 2.0 2 0 0 2 2 2 1 Wyosine base formation Pentapeptide_3 PF13576.1 gi|330507856|ref|YP_004384284.1| - 2.7e-26 91.1 55.5 8.5e-08 31.9 1.1 6.5 2 1 5 7 7 7 6 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|330507856|ref|YP_004384284.1| - 9.8e-05 22.0 22.8 0.0073 16.0 0.7 4.5 2 1 0 2 2 2 1 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|330507856|ref|YP_004384284.1| - 1.5 8.5 12.1 6.5 6.5 7.1 2.9 1 1 1 2 2 2 0 Ion channel HisG PF01634.13 gi|330507857|ref|YP_004384285.1| - 4e-38 130.5 0.0 6.1e-38 129.9 0.0 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|330507857|ref|YP_004384285.1| - 6.1e-22 77.3 0.1 1.3e-21 76.2 0.0 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain Metallophos_2 PF12850.2 gi|330507858|ref|YP_004384286.1| - 1.5e-12 47.6 0.0 4.1e-12 46.2 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|330507858|ref|YP_004384286.1| - 0.03 13.7 1.7 0.064 12.6 0.0 2.0 2 1 0 2 2 2 0 Calcineurin-like phosphoesterase Nitroreductase PF00881.19 gi|330507859|ref|YP_004384287.1| - 1.9e-32 112.3 0.1 2.2e-32 112.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Radical_SAM PF04055.16 gi|330507860|ref|YP_004384288.1| - 3e-19 69.7 0.0 5.7e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|330507860|ref|YP_004384288.1| - 3.9e-08 33.2 0.4 1.4e-07 31.4 0.2 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|330507860|ref|YP_004384288.1| - 0.00011 22.2 0.1 0.00032 20.7 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Glyoxalase_4 PF13669.1 gi|330507860|ref|YP_004384288.1| - 0.15 12.0 0.0 3.6 7.6 0.0 2.7 3 0 0 3 3 3 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ribosomal_S8e PF01201.17 gi|330507861|ref|YP_004384289.1| - 2e-32 112.1 5.2 2.1e-32 112.0 3.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF1922 PF09082.5 gi|330507862|ref|YP_004384290.1| - 3.4e-15 55.8 0.1 3.8e-15 55.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) AAA_19 PF13245.1 gi|330507862|ref|YP_004384290.1| - 0.1 12.3 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Part of AAA domain 4HBT PF03061.17 gi|330507863|ref|YP_004384291.1| - 1.2e-09 38.1 0.0 1.5e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily OrfB_IS605 PF01385.14 gi|330507864|ref|YP_004384292.1| - 8.9e-32 110.3 1.4 1.2e-31 109.8 1.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330507864|ref|YP_004384292.1| - 3.7e-24 84.1 1.2 9.6e-24 82.8 0.4 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330507864|ref|YP_004384292.1| - 2e-07 30.2 0.1 4.6e-07 29.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|330507864|ref|YP_004384292.1| - 0.018 14.2 1.8 0.041 13.0 1.3 1.7 1 1 0 1 1 1 0 zinc-ribbon domain RecR PF02132.10 gi|330507864|ref|YP_004384292.1| - 0.044 13.2 3.5 2.9 7.3 0.1 2.7 1 1 1 2 2 2 0 RecR protein TF_Zn_Ribbon PF08271.7 gi|330507864|ref|YP_004384292.1| - 0.22 10.8 3.3 0.48 9.7 0.0 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding Met_10 PF02475.11 gi|330507865|ref|YP_004384293.1| - 1.2e-50 171.8 0.0 1.5e-50 171.6 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|330507865|ref|YP_004384293.1| - 3.8e-11 43.5 0.0 6.8e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330507865|ref|YP_004384293.1| - 1.2e-09 38.2 0.4 2.5e-09 37.1 0.2 1.5 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|330507865|ref|YP_004384293.1| - 1.1e-07 31.3 0.0 5.4e-07 29.1 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|330507865|ref|YP_004384293.1| - 3.3e-05 23.4 0.0 5.5e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|330507865|ref|YP_004384293.1| - 0.0003 20.4 0.0 0.00045 19.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltrans_SAM PF10672.4 gi|330507865|ref|YP_004384293.1| - 0.0008 18.3 0.0 0.00099 18.0 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase tRNA_U5-meth_tr PF05958.6 gi|330507865|ref|YP_004384293.1| - 0.0052 15.5 0.0 0.0078 14.9 0.0 1.3 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase UPF0020 PF01170.13 gi|330507865|ref|YP_004384293.1| - 0.013 15.1 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|330507865|ref|YP_004384293.1| - 0.11 12.9 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DEDD_Tnp_IS110 PF01548.12 gi|330507866|ref|YP_004384294.1| - 2e-27 95.6 0.0 6.3e-27 94.0 0.0 1.8 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.11 gi|330507866|ref|YP_004384294.1| - 7.9e-25 86.7 0.0 1.4e-24 86.0 0.0 1.4 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family ERCC4 PF02732.10 gi|330507866|ref|YP_004384294.1| - 0.052 13.3 0.1 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 ERCC4 domain OrfB_Zn_ribbon PF07282.6 gi|330507870|ref|YP_004384298.1| - 4.8e-24 83.7 0.4 1.3e-23 82.3 0.0 1.9 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330507870|ref|YP_004384298.1| - 0.0025 17.2 1.6 0.0033 16.8 1.1 1.1 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|330507870|ref|YP_004384298.1| - 0.17 11.6 0.6 0.3 10.7 0.4 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family HAD_2 PF13419.1 gi|330507871|ref|YP_004384299.1| - 5.8e-12 46.1 0.0 8.1e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|330507871|ref|YP_004384299.1| - 0.00045 19.8 0.0 0.00076 19.1 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like PNK3P PF08645.6 gi|330507871|ref|YP_004384299.1| - 0.0011 18.4 0.0 0.0019 17.6 0.0 1.3 1 1 0 1 1 1 1 Polynucleotide kinase 3 phosphatase Hydrolase PF00702.21 gi|330507871|ref|YP_004384299.1| - 0.005 17.2 0.0 0.024 15.0 0.0 1.7 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|330507871|ref|YP_004384299.1| - 0.019 14.8 0.0 0.025 14.4 0.0 1.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|330507871|ref|YP_004384299.1| - 0.04 14.0 0.2 0.66 10.1 0.2 2.2 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase eIF_4G1 PF12152.3 gi|330507871|ref|YP_004384299.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 4G1 TrmB PF01978.14 gi|330507872|ref|YP_004384300.1| - 3.8e-05 23.3 0.1 8.1e-05 22.2 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|330507872|ref|YP_004384300.1| - 0.0007 19.3 0.0 0.00093 18.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TFIIE_alpha PF02002.12 gi|330507872|ref|YP_004384300.1| - 0.00089 18.7 0.1 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit Rrf2 PF02082.15 gi|330507872|ref|YP_004384300.1| - 0.0011 19.0 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|330507872|ref|YP_004384300.1| - 0.0012 19.0 0.0 0.0017 18.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|330507872|ref|YP_004384300.1| - 0.0078 15.8 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|330507872|ref|YP_004384300.1| - 0.0088 15.4 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|330507872|ref|YP_004384300.1| - 0.023 14.6 0.1 0.035 14.0 0.1 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|330507872|ref|YP_004384300.1| - 0.034 13.7 0.0 0.042 13.4 0.0 1.3 1 1 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|330507872|ref|YP_004384300.1| - 0.061 13.2 0.1 0.074 12.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_9 PF08221.6 gi|330507872|ref|YP_004384300.1| - 0.092 12.6 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain PRK PF00485.13 gi|330507873|ref|YP_004384301.1| - 6.2e-47 159.6 0.0 9.6e-47 159.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|330507873|ref|YP_004384301.1| - 1.4e-06 29.1 0.0 2.8e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|330507873|ref|YP_004384301.1| - 0.0023 18.2 0.0 0.0057 16.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|330507873|ref|YP_004384301.1| - 0.004 17.5 0.0 0.0066 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330507873|ref|YP_004384301.1| - 0.0055 16.7 0.0 0.0091 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|330507873|ref|YP_004384301.1| - 0.0065 15.5 0.2 0.027 13.5 0.1 1.8 1 1 1 2 2 2 1 Zeta toxin UPF0079 PF02367.12 gi|330507873|ref|YP_004384301.1| - 0.015 14.9 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|330507873|ref|YP_004384301.1| - 0.032 14.5 0.0 0.048 13.9 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_21 PF13304.1 gi|330507873|ref|YP_004384301.1| - 0.051 13.5 0.5 0.27 11.1 0.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|330507873|ref|YP_004384301.1| - 0.068 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain CPT PF07931.7 gi|330507873|ref|YP_004384301.1| - 0.075 12.6 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_19 PF13245.1 gi|330507873|ref|YP_004384301.1| - 0.079 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain HTH_3 PF01381.17 gi|330507874|ref|YP_004384302.1| - 1.4e-11 44.0 0.1 3e-11 42.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|330507874|ref|YP_004384302.1| - 3.4e-08 33.4 0.1 7.9e-08 32.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|330507874|ref|YP_004384302.1| - 2e-05 24.7 0.0 5.7e-05 23.2 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|330507874|ref|YP_004384302.1| - 9.1e-05 22.0 0.1 0.00025 20.6 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|330507874|ref|YP_004384302.1| - 0.00063 19.3 0.2 0.0023 17.5 0.1 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_25 PF13413.1 gi|330507874|ref|YP_004384302.1| - 0.0065 16.0 0.1 0.019 14.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain NUMOD1 PF07453.8 gi|330507874|ref|YP_004384302.1| - 0.011 15.6 0.0 0.03 14.1 0.0 1.8 1 0 0 1 1 1 0 NUMOD1 domain HTH_38 PF13936.1 gi|330507874|ref|YP_004384302.1| - 0.019 14.5 0.2 0.048 13.2 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|330507874|ref|YP_004384302.1| - 0.036 14.0 0.1 0.11 12.5 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|330507874|ref|YP_004384302.1| - 0.046 13.2 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain DUF1743 PF08489.6 gi|330507875|ref|YP_004384303.1| - 2.4e-38 130.4 0.0 3.6e-38 129.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|330507875|ref|YP_004384303.1| - 0.0056 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain zinc-ribbons_6 PF07191.7 gi|330507875|ref|YP_004384303.1| - 0.037 13.8 0.9 0.065 13.0 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbons NTP_transf_2 PF01909.18 gi|330507875|ref|YP_004384303.1| - 0.13 12.6 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 Nucleotidyltransferase domain DUF296 PF03479.10 gi|330507875|ref|YP_004384303.1| - 0.15 11.6 0.1 0.33 10.5 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF296) DHHA2 PF02833.9 gi|330507876|ref|YP_004384304.1| - 1.8e-36 125.1 1.0 3.5e-36 124.1 0.7 1.5 1 0 0 1 1 1 1 DHHA2 domain DHH PF01368.15 gi|330507876|ref|YP_004384304.1| - 2.5e-35 121.2 0.5 3.7e-35 120.6 0.4 1.3 1 0 0 1 1 1 1 DHH family Thymidylate_kin PF02223.12 gi|330507877|ref|YP_004384305.1| - 2.9e-38 131.1 0.0 3.3e-38 130.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_22 PF13401.1 gi|330507877|ref|YP_004384305.1| - 4.6e-05 23.5 0.0 9.5e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|330507877|ref|YP_004384305.1| - 0.0001 22.3 0.0 0.00013 21.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|330507877|ref|YP_004384305.1| - 0.00069 19.3 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|330507877|ref|YP_004384305.1| - 0.0034 17.7 0.0 0.009 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|330507877|ref|YP_004384305.1| - 0.0051 16.6 0.1 0.022 14.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|330507877|ref|YP_004384305.1| - 0.023 14.3 0.1 0.14 11.8 0.1 2.1 1 1 1 2 2 2 0 NACHT domain AAA_16 PF13191.1 gi|330507877|ref|YP_004384305.1| - 0.04 13.8 0.2 0.062 13.2 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|330507877|ref|YP_004384305.1| - 0.046 14.5 0.5 0.11 13.3 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|330507877|ref|YP_004384305.1| - 0.053 13.4 0.0 0.095 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|330507877|ref|YP_004384305.1| - 0.083 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.9 gi|330507877|ref|YP_004384305.1| - 0.12 11.3 0.0 0.12 11.3 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain AAA_30 PF13604.1 gi|330507877|ref|YP_004384305.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|330507877|ref|YP_004384305.1| - 0.13 11.7 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MAF_flag10 PF01973.13 gi|330507878|ref|YP_004384306.1| - 2.1e-32 111.9 0.0 2.7e-32 111.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|330507878|ref|YP_004384306.1| - 0.014 14.9 0.2 0.074 12.6 0.1 2.1 2 1 1 3 3 3 0 Thiamin pyrophosphokinase, catalytic domain Lactamase_B_2 PF12706.2 gi|330507878|ref|YP_004384306.1| - 0.12 11.8 0.0 2.2 7.7 0.0 2.1 2 0 0 2 2 2 0 Beta-lactamase superfamily domain DUF4303 PF14136.1 gi|330507880|ref|YP_004384308.1| - 0.8 9.3 15.9 1.2 8.7 2.4 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4303) TPR_MLP1_2 PF07926.7 gi|330507880|ref|YP_004384308.1| - 1 9.1 42.0 1.5 8.5 12.0 3.5 2 2 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF3810 PF12725.2 gi|330507880|ref|YP_004384308.1| - 1 8.1 13.3 0.069 12.0 1.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3810) Taxilin PF09728.4 gi|330507880|ref|YP_004384308.1| - 1.9 7.4 46.0 3.8 6.4 9.7 3.0 1 1 2 3 3 3 0 Myosin-like coiled-coil protein Noelin-1 PF12308.3 gi|330507880|ref|YP_004384308.1| - 4.5 7.1 9.8 3.1 7.6 0.8 3.1 1 1 2 3 3 3 0 Neurogenesis glycoprotein ADIP PF11559.3 gi|330507880|ref|YP_004384308.1| - 5.1 6.9 41.1 3.1 7.6 4.1 4.2 1 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding FUSC PF04632.7 gi|330507880|ref|YP_004384308.1| - 7.5 4.8 17.9 1.7e+02 0.3 12.4 2.0 1 1 0 1 1 1 0 Fusaric acid resistance protein family CGI-121 PF08617.5 gi|330507881|ref|YP_004384309.1| - 4.7e-24 84.8 0.0 6.5e-24 84.4 0.0 1.2 1 0 0 1 1 1 1 Kinase binding protein CGI-121 DUF2150 PF09920.4 gi|330507882|ref|YP_004384310.1| - 1e-60 204.6 3.5 1.2e-60 204.3 2.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) CorA PF01544.13 gi|330507882|ref|YP_004384310.1| - 0.073 12.0 0.2 1 8.3 0.1 2.0 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Peptidase_M24 PF00557.19 gi|330507883|ref|YP_004384311.1| - 2.5e-43 148.1 0.0 3e-43 147.8 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.19 gi|330507884|ref|YP_004384312.1| - 1.7e-39 135.5 0.2 2.1e-39 135.2 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|330507884|ref|YP_004384312.1| - 7.3e-06 26.5 0.0 1.3e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain PV-1 PF06637.6 gi|330507884|ref|YP_004384312.1| - 0.045 12.3 0.3 0.067 11.7 0.2 1.2 1 0 0 1 1 1 0 PV-1 protein (PLVAP) PcrB PF01884.12 gi|330507885|ref|YP_004384313.1| - 1.3e-75 253.6 0.0 1.4e-75 253.5 0.0 1.0 1 0 0 1 1 1 1 PcrB family DHO_dh PF01180.16 gi|330507885|ref|YP_004384313.1| - 0.00022 20.3 0.4 0.00035 19.6 0.3 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|330507885|ref|YP_004384313.1| - 0.00027 20.2 0.1 0.00046 19.5 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.9 gi|330507885|ref|YP_004384313.1| - 0.0003 19.7 1.1 0.069 12.1 0.0 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|330507885|ref|YP_004384313.1| - 0.0057 15.5 0.9 0.043 12.6 0.5 2.1 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Ribul_P_3_epim PF00834.14 gi|330507885|ref|YP_004384313.1| - 0.013 14.6 0.3 0.024 13.7 0.2 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family ThiG PF05690.9 gi|330507885|ref|YP_004384313.1| - 0.027 13.5 4.1 0.039 13.0 0.4 2.1 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Glu_synthase PF01645.12 gi|330507885|ref|YP_004384313.1| - 0.03 13.2 4.8 0.94 8.3 0.5 2.1 2 0 0 2 2 2 0 Conserved region in glutamate synthase DUF4350 PF14258.1 gi|330507885|ref|YP_004384313.1| - 0.066 13.4 0.2 8.3 6.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) Trp_syntA PF00290.15 gi|330507885|ref|YP_004384313.1| - 0.071 11.6 0.2 3.7 6.0 0.1 2.1 2 0 0 2 2 2 0 Tryptophan synthase alpha chain IGPS PF00218.16 gi|330507885|ref|YP_004384313.1| - 0.13 11.3 0.2 0.22 10.5 0.1 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Ribosomal_L40e PF01020.12 gi|330507886|ref|YP_004384314.1| - 5.7e-06 25.8 5.1 6.9e-06 25.5 3.5 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DNA_RNApol_7kD PF03604.8 gi|330507886|ref|YP_004384314.1| - 0.00045 19.6 3.4 0.00068 19.0 2.4 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|330507886|ref|YP_004384314.1| - 0.0005 19.4 1.2 0.00072 18.9 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|330507886|ref|YP_004384314.1| - 0.0015 18.3 0.7 0.0016 18.2 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330507886|ref|YP_004384314.1| - 0.0068 15.5 1.0 0.0086 15.2 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-DHHC PF01529.15 gi|330507886|ref|YP_004384314.1| - 0.01 15.2 0.8 0.011 15.1 0.5 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase UPF0547 PF10571.4 gi|330507886|ref|YP_004384314.1| - 0.08 12.6 3.2 0.22 11.2 2.2 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-RanBP PF00641.13 gi|330507886|ref|YP_004384314.1| - 0.12 11.5 3.5 0.18 10.9 2.4 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others HypA PF01155.14 gi|330507886|ref|YP_004384314.1| - 0.22 11.1 1.1 0.23 11.1 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Mu-like_Com PF10122.4 gi|330507886|ref|YP_004384314.1| - 1.4 8.0 8.5 6.1 5.9 5.9 1.9 1 1 1 2 2 2 0 Mu-like prophage protein Com RNA_POL_M_15KD PF02150.11 gi|330507886|ref|YP_004384314.1| - 1.5 8.5 6.4 11 5.8 4.4 2.1 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Malic_M PF03949.10 gi|330507887|ref|YP_004384315.1| - 7.6e-71 238.6 2.6 1.2e-70 238.0 1.8 1.3 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|330507887|ref|YP_004384315.1| - 2.2e-30 105.6 0.1 5.8e-23 81.4 0.1 2.4 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain ELFV_dehydrog PF00208.16 gi|330507887|ref|YP_004384315.1| - 1.6e-06 27.9 0.0 3.9e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Pyr_redox_3 PF13738.1 gi|330507887|ref|YP_004384315.1| - 0.0055 16.7 0.0 0.03 14.3 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|330507887|ref|YP_004384315.1| - 0.021 14.0 0.2 0.061 12.4 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|330507887|ref|YP_004384315.1| - 0.051 13.3 0.2 0.051 13.3 0.1 2.5 4 0 0 4 4 4 0 ThiF family Pyr_redox_2 PF07992.9 gi|330507887|ref|YP_004384315.1| - 0.083 12.7 0.2 0.18 11.6 0.2 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|330507887|ref|YP_004384315.1| - 0.097 12.7 0.7 0.61 10.1 0.0 2.6 3 1 1 4 4 4 0 Shikimate / quinate 5-dehydrogenase Iso_dh PF00180.15 gi|330507888|ref|YP_004384316.1| - 6.8e-92 308.0 0.0 2e-91 306.5 0.0 1.6 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Antirestrict PF03230.8 gi|330507888|ref|YP_004384316.1| - 0.066 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Antirestriction protein Aconitase_C PF00694.14 gi|330507890|ref|YP_004384318.1| - 3.7e-20 72.3 0.1 7.6e-20 71.3 0.0 1.4 1 1 1 2 2 2 1 Aconitase C-terminal domain FMN_red PF03358.10 gi|330507891|ref|YP_004384319.1| - 1.3e-31 109.1 0.0 1.6e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|330507891|ref|YP_004384319.1| - 3.5e-06 26.6 0.0 3.9e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavoprotein PF02441.14 gi|330507892|ref|YP_004384320.1| - 2.8e-19 69.0 0.0 3.8e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein DHO_dh PF01180.16 gi|330507892|ref|YP_004384320.1| - 0.031 13.2 0.0 0.031 13.2 0.0 1.1 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DUF104 PF01954.11 gi|330507892|ref|YP_004384320.1| - 0.12 12.4 1.7 0.56 10.2 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function DUF104 CbiX PF01903.12 gi|330507893|ref|YP_004384321.1| - 3.1e-26 91.5 0.0 3.6e-26 91.3 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|330507893|ref|YP_004384321.1| - 2.5e-05 23.5 0.0 2.6e-05 23.4 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|330507893|ref|YP_004384321.1| - 0.012 14.5 0.0 0.013 14.4 0.0 1.1 1 0 0 1 1 1 0 Ferrochelatase Mur_ligase_M PF08245.7 gi|330507894|ref|YP_004384322.1| - 6.8e-05 22.9 0.2 0.00011 22.3 0.1 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Oxidored_nitro PF00148.14 gi|330507895|ref|YP_004384323.1| - 1.1e-17 63.7 0.0 1.6e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SHOCT PF09851.4 gi|330507895|ref|YP_004384323.1| - 0.002 17.5 0.6 0.0046 16.3 0.4 1.7 1 0 0 1 1 1 1 Short C-terminal domain Spore_YtfJ PF09579.5 gi|330507897|ref|YP_004384325.1| - 7.1e-18 64.2 2.2 9.3e-18 63.8 1.5 1.2 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) Hexokinase_1 PF00349.16 gi|330507897|ref|YP_004384325.1| - 0.078 12.3 0.0 0.72 9.1 0.0 2.0 2 0 0 2 2 2 0 Hexokinase ApbA_C PF08546.6 gi|330507898|ref|YP_004384326.1| - 4.8e-34 117.0 0.0 1.7e-33 115.3 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|330507898|ref|YP_004384326.1| - 8.1e-25 87.0 0.0 1.1e-24 86.5 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|330507898|ref|YP_004384326.1| - 0.00068 19.3 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus bPH_6 PF10756.4 gi|330507898|ref|YP_004384326.1| - 0.0031 17.3 0.1 0.018 14.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial PH domain Pyr_redox PF00070.22 gi|330507898|ref|YP_004384326.1| - 0.011 16.1 0.5 0.036 14.4 0.1 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HTH_5 PF01022.15 gi|330507900|ref|YP_004384328.1| - 9.6e-06 25.1 3.6 1.1e-05 24.9 0.1 2.6 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|330507900|ref|YP_004384328.1| - 5.5e-05 22.8 0.0 0.00011 21.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|330507900|ref|YP_004384328.1| - 0.0002 21.1 0.3 0.0006 19.5 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|330507900|ref|YP_004384328.1| - 0.00064 19.6 0.1 0.0018 18.2 0.1 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain Sulfolobus_pRN PF05584.6 gi|330507900|ref|YP_004384328.1| - 0.044 13.7 0.2 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein Rio2_N PF09202.6 gi|330507900|ref|YP_004384328.1| - 0.09 12.8 0.0 0.36 10.9 0.0 2.0 1 0 0 1 1 1 0 Rio2, N-terminal HTH_12 PF08461.5 gi|330507900|ref|YP_004384328.1| - 0.38 10.5 4.4 0.54 10.0 0.1 3.1 3 1 0 3 3 3 0 Ribonuclease R winged-helix domain MTH865 PF07747.6 gi|330507901|ref|YP_004384329.1| - 6.5e-30 102.5 0.2 7.1e-30 102.4 0.2 1.0 1 0 0 1 1 1 1 MTH865-like family Pyridox_oxidase PF01243.15 gi|330507902|ref|YP_004384330.1| - 2.5e-15 56.2 0.0 3.3e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.2 gi|330507902|ref|YP_004384330.1| - 0.024 14.9 0.0 0.034 14.4 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase OSCP PF00213.13 gi|330507902|ref|YP_004384330.1| - 0.12 12.2 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 ATP synthase delta (OSCP) subunit DUF2099 PF09872.4 gi|330507903|ref|YP_004384331.1| - 7.8e-88 293.8 6.3 8.9e-88 293.6 4.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Ribosomal_L5 PF00281.14 gi|330507903|ref|YP_004384331.1| - 0.018 14.8 0.1 0.041 13.6 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L5 DUF4277 PF14104.1 gi|330507904|ref|YP_004384332.1| - 6.6e-39 132.6 0.0 1.4e-38 131.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|330507904|ref|YP_004384332.1| - 7.8e-09 35.3 0.1 4.1e-08 33.0 0.1 2.0 1 1 0 1 1 1 1 Transposase DDE domain CDC27 PF09507.5 gi|330507904|ref|YP_004384332.1| - 0.029 13.6 0.0 0.041 13.1 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 CdhC PF03598.10 gi|330507905|ref|YP_004384333.1| - 9.2e-167 554.6 0.0 1.2e-166 554.3 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit MarR_2 PF12802.2 gi|330507905|ref|YP_004384333.1| - 0.057 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF1420 PF07220.6 gi|330507905|ref|YP_004384333.1| - 0.076 11.3 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1420) DUF772 PF05598.6 gi|330507907|ref|YP_004384335.1| - 1.4e-21 76.1 0.1 2.1e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 Transposase domain (DUF772) Myb_DNA-bind_4 PF13837.1 gi|330507907|ref|YP_004384335.1| - 0.01 15.9 0.1 0.016 15.3 0.0 1.3 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain DDE_Tnp_1_6 PF13751.1 gi|330507909|ref|YP_004384337.1| - 0.13 12.2 0.4 0.14 12.1 0.3 1.0 1 0 0 1 1 1 0 Transposase DDE domain dCMP_cyt_deam_1 PF00383.17 gi|330507911|ref|YP_004384339.1| - 8.2e-29 99.2 2.6 1.1e-28 98.9 1.8 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region XOO_2897-deam PF14440.1 gi|330507911|ref|YP_004384339.1| - 3.2e-05 23.6 0.2 3.7e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase Bd3614-deam PF14439.1 gi|330507911|ref|YP_004384339.1| - 0.0011 18.8 2.1 0.0022 17.8 1.4 1.6 1 1 1 2 2 2 1 Bd3614-like deaminase APOBEC_N PF08210.6 gi|330507911|ref|YP_004384339.1| - 0.0011 18.6 0.4 0.0017 17.9 0.3 1.3 1 0 0 1 1 1 1 APOBEC-like N-terminal domain MafB19-deam PF14437.1 gi|330507911|ref|YP_004384339.1| - 0.016 14.8 3.0 0.026 14.1 2.1 1.3 1 0 0 1 1 1 0 MafB19-like deaminase zf-C3HC4 PF00097.20 gi|330507911|ref|YP_004384339.1| - 0.047 13.3 2.4 0.13 11.9 1.7 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) tRNA-synt_1f PF01921.13 gi|330507912|ref|YP_004384340.1| - 1.7e-127 425.0 0.0 2.3e-127 424.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|330507912|ref|YP_004384340.1| - 1.6e-05 23.7 0.0 0.0021 16.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|330507912|ref|YP_004384340.1| - 0.0053 15.9 0.0 0.72 8.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain TF_Zn_Ribbon PF08271.7 gi|330507912|ref|YP_004384340.1| - 0.2 11.0 1.6 0.41 10.0 1.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Nuc_deoxyrib_tr PF05014.10 gi|330507913|ref|YP_004384341.1| - 4e-24 84.6 0.0 4.9e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DUF4406 PF14359.1 gi|330507913|ref|YP_004384341.1| - 0.0084 16.1 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4406) TIR_2 PF13676.1 gi|330507913|ref|YP_004384341.1| - 0.035 14.2 0.0 0.051 13.7 0.0 1.3 1 0 0 1 1 1 0 TIR domain DUF3670 PF12419.3 gi|330507913|ref|YP_004384341.1| - 0.037 13.4 0.0 0.087 12.2 0.0 1.5 2 0 0 2 2 2 0 SNF2 Helicase protein Metallophos_2 PF12850.2 gi|330507914|ref|YP_004384342.1| - 2.1e-05 24.4 0.0 2.3e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|330507914|ref|YP_004384342.1| - 2.4e-05 23.8 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Pribosyltran PF00156.22 gi|330507915|ref|YP_004384343.1| - 1.7e-10 40.7 0.1 2.3e-10 40.2 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|330507915|ref|YP_004384343.1| - 0.0041 16.3 0.0 0.005 16.0 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF11 PF01345.13 gi|330507916|ref|YP_004384344.1| - 0.026 14.5 1.3 0.065 13.2 0.9 1.7 1 0 0 1 1 1 0 Domain of unknown function DUF11 DUF2340 PF10209.4 gi|330507917|ref|YP_004384345.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2340) Met_10 PF02475.11 gi|330507918|ref|YP_004384346.1| - 9.2e-61 204.9 0.0 1.3e-60 204.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|330507918|ref|YP_004384346.1| - 0.00017 21.0 0.0 0.00031 20.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|330507918|ref|YP_004384346.1| - 0.00038 20.4 0.0 0.00089 19.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|330507918|ref|YP_004384346.1| - 0.0024 17.4 0.0 0.0036 16.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|330507918|ref|YP_004384346.1| - 0.011 16.3 0.0 0.022 15.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|330507918|ref|YP_004384346.1| - 0.04 13.3 0.0 0.062 12.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.6 gi|330507918|ref|YP_004384346.1| - 0.069 11.8 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.12 gi|330507918|ref|YP_004384346.1| - 0.17 10.9 0.0 0.23 10.5 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase HSP20 PF00011.16 gi|330507920|ref|YP_004384348.1| - 1.1e-11 44.4 3.7 3.5e-10 39.6 2.6 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family DUF3794 PF12673.2 gi|330507920|ref|YP_004384348.1| - 0.013 15.5 0.9 0.028 14.5 0.4 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3794) HMA PF00403.21 gi|330507920|ref|YP_004384348.1| - 0.018 15.1 3.0 0.14 12.3 1.0 2.1 1 1 1 2 2 2 0 Heavy-metal-associated domain CS PF04969.11 gi|330507920|ref|YP_004384348.1| - 0.025 15.1 1.3 0.041 14.4 0.9 1.3 1 0 0 1 1 1 0 CS domain tRNA-synt_2b PF00587.20 gi|330507921|ref|YP_004384349.1| - 2.2e-55 186.9 0.3 4e-55 186.0 0.2 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|330507921|ref|YP_004384349.1| - 2.5e-23 81.8 0.1 7.8e-23 80.2 0.0 1.9 1 0 0 1 1 1 1 Anticodon binding domain Zn-ribbon_8 PF09723.5 gi|330507921|ref|YP_004384349.1| - 0.03 14.2 0.7 0.87 9.5 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain CTP_transf_1 PF01148.15 gi|330507922|ref|YP_004384350.1| - 0.31 10.6 15.0 7.9 6.0 10.4 2.6 1 1 0 1 1 1 0 Cytidylyltransferase family DUF1212 PF06738.7 gi|330507922|ref|YP_004384350.1| - 1.7 8.0 9.5 0.36 10.2 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) ADK PF00406.17 gi|330507923|ref|YP_004384351.1| - 3.3e-61 205.5 0.0 3.9e-61 205.3 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|330507923|ref|YP_004384351.1| - 3e-17 61.9 2.5 7.7e-17 60.6 1.7 1.7 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|330507923|ref|YP_004384351.1| - 1.8e-10 41.6 0.0 2.6e-10 41.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|330507923|ref|YP_004384351.1| - 1.2e-06 28.8 0.0 2e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|330507923|ref|YP_004384351.1| - 6.6e-06 26.0 0.0 1.7e-05 24.6 0.0 1.6 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|330507923|ref|YP_004384351.1| - 0.0018 18.4 0.0 0.0033 17.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.12 gi|330507923|ref|YP_004384351.1| - 0.022 14.1 0.0 0.7 9.2 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase RuvB_N PF05496.7 gi|330507923|ref|YP_004384351.1| - 0.026 13.5 0.0 0.038 13.0 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Cytidylate_kin2 PF13189.1 gi|330507923|ref|YP_004384351.1| - 0.026 14.4 0.0 0.23 11.3 0.0 2.0 2 0 0 2 2 2 0 Cytidylate kinase-like family ABC_tran PF00005.22 gi|330507923|ref|YP_004384351.1| - 0.044 14.0 0.1 0.044 14.0 0.1 1.4 1 1 0 1 1 1 0 ABC transporter NTPase_1 PF03266.10 gi|330507923|ref|YP_004384351.1| - 0.05 13.3 0.1 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 NTPase Pox_A3L PF05288.6 gi|330507923|ref|YP_004384351.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A3L Protein SKI PF01202.17 gi|330507923|ref|YP_004384351.1| - 0.12 12.2 0.1 0.97 9.2 0.0 2.1 2 1 0 2 2 2 0 Shikimate kinase AAA_19 PF13245.1 gi|330507923|ref|YP_004384351.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_5 PF07728.9 gi|330507923|ref|YP_004384351.1| - 0.14 11.8 0.0 0.39 10.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) zf-C2HC5 PF06221.8 gi|330507923|ref|YP_004384351.1| - 0.29 10.9 2.3 7.1 6.4 0.0 2.3 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type AA_kinase PF00696.23 gi|330507925|ref|YP_004384353.1| - 5e-30 104.8 2.3 1.2e-29 103.5 1.6 1.5 1 1 0 1 1 1 1 Amino acid kinase family HrcA_DNA-bdg PF03444.10 gi|330507926|ref|YP_004384354.1| - 4.2e-36 122.2 0.1 8.1e-36 121.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|330507926|ref|YP_004384354.1| - 1.8e-15 56.4 0.0 9.7e-09 34.8 0.0 2.8 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|330507926|ref|YP_004384354.1| - 7.5e-08 32.3 0.1 2.1e-07 30.9 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|330507926|ref|YP_004384354.1| - 6.2e-07 28.9 0.1 8.8e-06 25.2 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|330507926|ref|YP_004384354.1| - 0.00034 20.3 0.0 0.00096 18.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|330507926|ref|YP_004384354.1| - 0.0081 15.8 0.1 0.046 13.3 0.0 2.4 2 1 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|330507926|ref|YP_004384354.1| - 0.0087 15.5 0.9 0.024 14.2 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|330507926|ref|YP_004384354.1| - 0.011 15.4 0.0 0.088 12.5 0.0 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Aconitase_2_N PF06434.8 gi|330507926|ref|YP_004384354.1| - 0.079 12.3 0.3 0.13 11.6 0.2 1.4 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus Sigma70_r4_2 PF08281.7 gi|330507926|ref|YP_004384354.1| - 0.14 11.6 0.1 0.85 9.1 0.0 2.3 3 0 0 3 3 3 0 Sigma-70, region 4 Radical_SAM PF04055.16 gi|330507927|ref|YP_004384355.1| - 1.4e-17 64.3 0.0 2.1e-17 63.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|330507927|ref|YP_004384355.1| - 2.1e-06 27.9 0.2 2.1e-06 27.9 0.2 1.7 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|330507927|ref|YP_004384355.1| - 8.2e-05 22.7 0.0 0.00014 21.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1537 PF07005.6 gi|330507927|ref|YP_004384355.1| - 0.0062 16.2 0.1 0.0095 15.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF1537 Fer4_14 PF13394.1 gi|330507927|ref|YP_004384355.1| - 0.024 14.6 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain BEN PF10523.4 gi|330507927|ref|YP_004384355.1| - 0.069 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 BEN domain PRA-CH PF01502.13 gi|330507928|ref|YP_004384356.1| - 3.7e-38 129.0 0.1 4.5e-38 128.7 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase DUF650 PF04894.7 gi|330507929|ref|YP_004384357.1| - 7.2e-85 284.7 0.0 1.2e-84 284.0 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|330507929|ref|YP_004384357.1| - 6.2e-34 115.9 0.0 9e-34 115.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) E1-E2_ATPase PF00122.15 gi|330507930|ref|YP_004384358.1| - 3e-76 255.4 5.5 3e-76 255.4 3.8 3.2 3 1 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|330507930|ref|YP_004384358.1| - 4.5e-44 150.1 3.8 4.5e-44 150.1 2.6 2.8 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|330507930|ref|YP_004384358.1| - 2.7e-35 122.7 0.1 9e-35 121.0 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|330507930|ref|YP_004384358.1| - 7.1e-19 67.5 0.0 2.2e-18 66.0 0.0 1.8 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Cation_ATPase_N PF00690.21 gi|330507930|ref|YP_004384358.1| - 1.6e-18 65.9 0.6 6.8e-18 63.8 0.0 2.3 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|330507930|ref|YP_004384358.1| - 2.9e-17 63.4 0.0 7.2e-17 62.1 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|330507930|ref|YP_004384358.1| - 6.6e-05 22.6 4.2 0.00019 21.0 0.8 2.7 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase PRA1 PF03208.14 gi|330507930|ref|YP_004384358.1| - 0.0069 15.7 0.2 0.0069 15.7 0.1 3.6 4 0 0 4 4 4 1 PRA1 family protein tRNA-synt_2d PF01409.15 gi|330507931|ref|YP_004384359.1| - 4.3e-94 314.3 0.0 5.4e-94 314.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|330507931|ref|YP_004384359.1| - 5.9e-05 21.9 0.6 0.26 10.0 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_45 PF14947.1 gi|330507931|ref|YP_004384359.1| - 0.00022 20.9 0.0 0.12 12.1 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix tRNA-synt_2b PF00587.20 gi|330507931|ref|YP_004384359.1| - 0.0049 16.4 0.0 0.019 14.5 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HTH_27 PF13463.1 gi|330507931|ref|YP_004384359.1| - 0.014 15.7 0.0 9.9 6.5 0.0 2.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain B5 PF03484.10 gi|330507932|ref|YP_004384360.1| - 3.6e-16 58.7 0.0 2.8e-14 52.6 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|330507932|ref|YP_004384360.1| - 5.5e-12 45.4 0.0 9.2e-12 44.7 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain CBS PF00571.23 gi|330507933|ref|YP_004384361.1| - 1.4e-27 95.2 1.8 1.5e-16 59.8 0.2 2.0 2 0 0 2 2 2 2 CBS domain Phage_integrase PF00589.17 gi|330507934|ref|YP_004384362.1| - 1.7e-28 99.4 0.0 2.3e-28 99.0 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|330507934|ref|YP_004384362.1| - 1.5e-06 28.4 1.0 0.00034 20.8 0.0 3.2 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|330507934|ref|YP_004384362.1| - 0.00016 21.7 0.1 0.0042 17.2 0.0 2.8 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Late_protein_L2 PF00513.13 gi|330507934|ref|YP_004384362.1| - 0.028 13.3 0.0 0.04 12.7 0.0 1.1 1 0 0 1 1 1 0 Late Protein L2 UPF0047 PF01894.12 gi|330507934|ref|YP_004384362.1| - 0.051 13.3 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0047 SWIM PF04434.12 gi|330507935|ref|YP_004384363.1| - 0.00091 18.6 1.8 0.0016 17.8 1.3 1.5 1 1 0 1 1 1 1 SWIM zinc finger DUF2236 PF09995.4 gi|330507936|ref|YP_004384364.1| - 0.0047 16.2 0.2 0.0052 16.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2236) Uso1_p115_head PF04869.9 gi|330507936|ref|YP_004384364.1| - 0.028 13.1 0.1 0.05 12.3 0.1 1.4 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, head region P22_CoatProtein PF11651.3 gi|330507937|ref|YP_004384365.1| - 3.1e-13 49.1 0.7 4.4e-13 48.6 0.5 1.2 1 0 0 1 1 1 1 P22 coat protein - gene protein 5 RHH_4 PF13467.1 gi|330507941|ref|YP_004384369.1| - 0.049 13.5 0.0 0.064 13.1 0.0 1.3 1 1 0 1 1 1 0 Ribbon-helix-helix domain DUF1892 PF08987.5 gi|330507942|ref|YP_004384370.1| - 0.15 12.0 0.0 0.15 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1892) RHH_1 PF01402.16 gi|330507943|ref|YP_004384371.1| - 0.042 13.7 0.1 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Phage_min_cap2 PF06152.6 gi|330507943|ref|YP_004384371.1| - 0.076 11.9 0.3 0.092 11.7 0.2 1.0 1 0 0 1 1 1 0 Phage minor capsid protein 2 D5_N PF08706.6 gi|330507945|ref|YP_004384373.1| - 5.9e-12 45.9 0.1 1.7e-11 44.4 0.0 1.8 1 0 0 1 1 1 1 D5 N terminal like AAA_22 PF13401.1 gi|330507945|ref|YP_004384373.1| - 0.0022 18.1 0.0 0.0091 16.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|330507945|ref|YP_004384373.1| - 0.0053 16.7 1.4 0.0067 16.4 0.3 1.9 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|330507945|ref|YP_004384373.1| - 0.062 12.8 0.0 0.16 11.5 0.0 1.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|330507945|ref|YP_004384373.1| - 0.067 13.5 0.1 0.13 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|330507945|ref|YP_004384373.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TPR_20 PF14561.1 gi|330507946|ref|YP_004384374.1| - 0.044 13.9 1.7 0.088 12.9 0.0 2.2 3 0 0 3 3 3 0 Tetratricopeptide repeat Terminase_6 PF03237.10 gi|330507947|ref|YP_004384375.1| - 2.6e-31 108.7 0.0 4.7e-31 107.9 0.0 1.4 1 1 0 1 1 1 1 Terminase-like family Terminase_3 PF04466.8 gi|330507947|ref|YP_004384375.1| - 2.8e-23 82.6 0.0 3.6e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 Phage terminase large subunit Phage_prot_Gp6 PF05133.9 gi|330507948|ref|YP_004384376.1| - 7e-25 87.4 0.0 9.6e-25 87.0 0.0 1.1 1 0 0 1 1 1 1 Phage portal protein, SPP1 Gp6-like Phage_Mu_F PF04233.9 gi|330507949|ref|YP_004384377.1| - 1.1e-15 58.1 0.0 1.4e-15 57.8 0.0 1.1 1 0 0 1 1 1 1 Phage Mu protein F like protein Opy2 PF09463.5 gi|330507949|ref|YP_004384377.1| - 0.89 9.7 5.5 1.2 9.2 0.7 2.2 2 0 0 2 2 2 0 Opy2 protein DUF2207 PF09972.4 gi|330507951|ref|YP_004384379.1| - 2.4e-30 105.6 0.0 3.1e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) DUF4277 PF14104.1 gi|330507952|ref|YP_004384380.1| - 1.5e-39 134.7 0.0 3.1e-39 133.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|330507952|ref|YP_004384380.1| - 6.3e-09 35.6 0.2 4.9e-08 32.7 0.1 2.1 1 1 0 1 1 1 1 Transposase DDE domain CDC27 PF09507.5 gi|330507952|ref|YP_004384380.1| - 0.037 13.2 0.0 0.052 12.7 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 DUF2207 PF09972.4 gi|330507953|ref|YP_004384381.1| - 5.5e-23 81.3 0.0 7.8e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) LemA PF04011.7 gi|330507954|ref|YP_004384382.1| - 3.4e-44 150.1 0.1 4e-44 149.9 0.1 1.1 1 0 0 1 1 1 1 LemA family IncA PF04156.9 gi|330507954|ref|YP_004384382.1| - 0.031 13.8 0.8 0.055 13.0 0.5 1.3 1 1 0 1 1 1 0 IncA protein DUF4061 PF13270.1 gi|330507954|ref|YP_004384382.1| - 0.036 14.1 0.7 0.9 9.6 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4061) TBPIP PF07106.8 gi|330507954|ref|YP_004384382.1| - 0.038 13.5 0.7 2.1 7.8 0.1 2.1 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF2015 PF09435.5 gi|330507954|ref|YP_004384382.1| - 0.054 13.2 0.6 0.093 12.5 0.1 1.6 2 0 0 2 2 2 0 Fungal protein of unknown function (DUF2015) DUF2142 PF09913.4 gi|330507954|ref|YP_004384382.1| - 0.062 11.9 0.1 1.3 7.6 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2142) DUF3552 PF12072.3 gi|330507954|ref|YP_004384382.1| - 1.1 8.4 5.9 0.3 10.2 0.4 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) HAMP PF00672.20 gi|330507954|ref|YP_004384382.1| - 9.1 6.5 6.5 9.7 6.4 1.9 2.8 2 2 0 2 2 2 0 HAMP domain NosD PF05048.8 gi|330507955|ref|YP_004384383.1| - 1.6e-32 112.5 32.3 6.3e-20 71.3 8.6 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|330507955|ref|YP_004384383.1| - 3.4e-22 78.9 30.8 3.7e-13 49.5 7.9 2.4 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|330507955|ref|YP_004384383.1| - 5.9e-08 32.1 18.4 2.4e-05 23.6 9.4 3.7 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.2 gi|330507955|ref|YP_004384383.1| - 7.4e-06 26.2 9.1 2e-05 24.8 6.1 1.9 1 1 0 1 1 1 1 Pectate lyase superfamily protein DUF389 PF04087.9 gi|330507956|ref|YP_004384384.1| - 7.8e-34 116.5 17.5 7.8e-34 116.5 12.1 2.4 3 0 0 3 3 3 2 Domain of unknown function (DUF389) MarC PF01914.12 gi|330507957|ref|YP_004384385.1| - 8.4e-56 188.3 12.6 9.4e-56 188.1 8.7 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.13 gi|330507957|ref|YP_004384385.1| - 0.001 18.3 6.6 0.0026 17.0 4.5 1.8 1 1 0 1 1 1 1 LysE type translocator RseC_MucC PF04246.7 gi|330507957|ref|YP_004384385.1| - 4.2 6.9 7.9 0.51 9.9 0.1 2.6 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DNA_pol_B PF00136.16 gi|330507958|ref|YP_004384386.1| - 2e-108 363.1 0.0 2.7e-108 362.7 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|330507958|ref|YP_004384386.1| - 1.5e-51 175.1 0.0 2.2e-51 174.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|330507958|ref|YP_004384386.1| - 3.4e-06 26.9 0.0 7.5e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|330507958|ref|YP_004384386.1| - 1.3e-05 24.8 0.0 2.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB TBP PF00352.16 gi|330507959|ref|YP_004384387.1| - 5.6e-67 221.1 0.4 6.5e-33 111.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|330507959|ref|YP_004384387.1| - 5.3e-09 36.0 0.0 0.0017 18.3 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Saccharop_dh_N PF04455.7 gi|330507960|ref|YP_004384388.1| - 6.9e-37 125.7 0.1 1.3e-36 124.8 0.1 1.4 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region ACT_4 PF13291.1 gi|330507960|ref|YP_004384388.1| - 0.042 14.1 0.1 0.097 13.0 0.0 1.6 1 0 0 1 1 1 0 ACT domain DNA_ligase_A_M PF01068.16 gi|330507961|ref|YP_004384389.1| - 2e-16 59.9 0.0 4.5e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|330507961|ref|YP_004384389.1| - 0.00056 19.7 0.1 0.0039 17.0 0.1 2.1 1 1 0 1 1 1 1 RNA ligase CBS PF00571.23 gi|330507962|ref|YP_004384390.1| - 4.6e-42 141.5 11.2 6.2e-13 48.3 0.4 4.1 4 0 0 4 4 4 4 CBS domain DUF746 PF05344.6 gi|330507962|ref|YP_004384390.1| - 0.12 11.9 0.0 0.35 10.4 0.0 1.8 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) CBS PF00571.23 gi|330507963|ref|YP_004384391.1| - 8.1e-51 169.5 5.1 2.7e-14 52.6 0.1 4.1 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.9 gi|330507963|ref|YP_004384391.1| - 0.027 14.5 0.1 2.6 8.2 0.0 2.6 3 0 0 3 3 3 0 Ribosomal protein L9, C-terminal domain DUF3132 PF11330.3 gi|330507963|ref|YP_004384391.1| - 0.037 13.8 0.1 0.085 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3132) H_kinase_N PF12282.3 gi|330507963|ref|YP_004384391.1| - 0.14 11.8 0.5 9.5 5.8 0.0 3.1 3 1 1 4 4 4 0 Signal transduction histidine kinase GCV_T_C PF08669.6 gi|330507963|ref|YP_004384391.1| - 0.14 12.1 0.2 34 4.5 0.0 3.5 3 1 1 4 4 4 0 Glycine cleavage T-protein C-terminal barrel domain CBS PF00571.23 gi|330507964|ref|YP_004384392.1| - 1.4e-52 175.2 3.6 6.3e-15 54.6 0.0 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|330507965|ref|YP_004384393.1| - 3.7e-49 164.2 10.5 2.8e-13 49.4 0.0 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|330507966|ref|YP_004384394.1| - 4.9e-27 93.4 4.0 7.8e-14 51.1 0.1 2.3 2 0 0 2 2 2 2 CBS domain DUF1335 PF07056.6 gi|330507966|ref|YP_004384394.1| - 0.049 13.3 0.1 0.13 12.0 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1335) RecR PF02132.10 gi|330507966|ref|YP_004384394.1| - 0.55 9.7 3.0 0.49 9.8 0.6 2.0 2 0 0 2 2 2 0 RecR protein MoCF_biosynth PF00994.19 gi|330507967|ref|YP_004384395.1| - 9e-27 93.2 0.0 9.6e-27 93.1 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF1786 PF08735.5 gi|330507968|ref|YP_004384396.1| - 1.6e-84 283.0 0.0 2e-84 282.7 0.0 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) Pkinase PF00069.20 gi|330507969|ref|YP_004384397.1| - 3.9e-07 29.5 0.0 5.7e-07 28.9 0.0 1.3 1 1 0 1 1 1 1 Protein kinase domain RIO1 PF01163.17 gi|330507969|ref|YP_004384397.1| - 7.1e-06 25.4 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|330507969|ref|YP_004384397.1| - 3.3e-05 23.0 0.0 5.3e-05 22.3 0.0 1.4 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|330507969|ref|YP_004384397.1| - 0.00033 20.4 0.3 0.0098 15.6 0.1 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family WaaY PF06176.6 gi|330507969|ref|YP_004384397.1| - 0.00044 19.5 0.1 0.0006 19.1 0.1 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.15 gi|330507969|ref|YP_004384397.1| - 0.005 16.4 0.1 0.68 9.4 0.0 2.3 1 1 1 2 2 2 2 Choline/ethanolamine kinase Pkinase_Tyr PF07714.12 gi|330507969|ref|YP_004384397.1| - 0.0073 15.4 0.0 0.0082 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Alba PF01918.16 gi|330507970|ref|YP_004384398.1| - 8.6e-15 54.0 0.1 1.1e-14 53.7 0.1 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|330507970|ref|YP_004384398.1| - 0.067 12.8 0.0 0.076 12.6 0.0 1.4 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Formyl_trans_N PF00551.14 gi|330507971|ref|YP_004384399.1| - 5.6e-45 153.1 0.0 6.3e-45 152.9 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase HIT PF01230.18 gi|330507972|ref|YP_004384400.1| - 9.6e-12 45.2 0.0 1.3e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|330507972|ref|YP_004384400.1| - 1.2e-05 25.4 0.0 1.7e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|330507972|ref|YP_004384400.1| - 1.7e-05 24.4 0.0 3.2e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Cation_ATPase_C PF00689.16 gi|330507974|ref|YP_004384402.1| - 8.2 5.9 20.2 0.79 9.2 6.0 2.8 2 1 0 2 2 2 0 Cation transporting ATPase, C-terminus ABC_tran PF00005.22 gi|330507975|ref|YP_004384403.1| - 1.6e-38 132.0 0.0 8.4e-21 74.7 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|330507975|ref|YP_004384403.1| - 4.2e-14 53.1 8.3 0.00094 19.2 0.0 4.2 2 2 2 4 4 4 3 AAA domain RLI PF04068.10 gi|330507975|ref|YP_004384403.1| - 1.4e-13 50.2 2.4 3e-13 49.0 1.6 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.14 gi|330507975|ref|YP_004384403.1| - 1.3e-12 47.3 6.5 0.00012 21.3 0.0 4.7 5 0 0 5 5 5 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.22 gi|330507975|ref|YP_004384403.1| - 8.3e-08 31.5 3.1 8.3e-08 31.5 2.2 2.3 3 0 0 3 3 2 1 4Fe-4S binding domain AAA_29 PF13555.1 gi|330507975|ref|YP_004384403.1| - 8e-07 28.5 0.1 0.012 15.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4_6 PF12837.2 gi|330507975|ref|YP_004384403.1| - 2.1e-06 27.3 11.4 9.7e-06 25.2 1.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain DUF258 PF03193.11 gi|330507975|ref|YP_004384403.1| - 2.6e-05 23.4 0.0 0.11 11.6 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 Fer4_7 PF12838.2 gi|330507975|ref|YP_004384403.1| - 0.00011 22.5 0.4 0.00011 22.5 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain AAA_25 PF13481.1 gi|330507975|ref|YP_004384403.1| - 0.00012 21.5 1.6 0.19 11.1 0.0 3.5 4 0 0 4 4 3 1 AAA domain AAA_16 PF13191.1 gi|330507975|ref|YP_004384403.1| - 0.00013 21.9 0.8 0.37 10.7 0.2 2.9 2 1 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|330507975|ref|YP_004384403.1| - 0.00055 19.7 0.1 2.1 8.3 0.0 2.9 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit Fer4_2 PF12797.2 gi|330507975|ref|YP_004384403.1| - 0.00065 19.4 2.3 0.00065 19.4 1.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_15 PF13175.1 gi|330507975|ref|YP_004384403.1| - 0.0008 18.5 0.0 5.2 5.9 0.0 3.6 4 0 0 4 4 4 0 AAA ATPase domain Fer4_21 PF14697.1 gi|330507975|ref|YP_004384403.1| - 0.00087 19.0 6.3 0.0014 18.3 4.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_23 PF13476.1 gi|330507975|ref|YP_004384403.1| - 0.00088 19.6 0.3 1.7 8.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain Fer4_10 PF13237.1 gi|330507975|ref|YP_004384403.1| - 0.00096 18.9 1.1 0.00096 18.9 0.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330507975|ref|YP_004384403.1| - 0.0014 18.8 18.3 0.0029 17.8 1.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Rad17 PF03215.10 gi|330507975|ref|YP_004384403.1| - 0.0029 16.3 0.1 1.4 7.5 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein ArgK PF03308.11 gi|330507975|ref|YP_004384403.1| - 0.0038 16.0 1.3 1.6 7.4 0.1 2.3 2 0 0 2 2 2 2 ArgK protein Fer4_16 PF13484.1 gi|330507975|ref|YP_004384403.1| - 0.0098 16.6 0.2 0.0098 16.6 0.1 2.1 2 0 0 2 2 1 1 4Fe-4S double cluster binding domain AAA_17 PF13207.1 gi|330507975|ref|YP_004384403.1| - 0.014 16.2 1.4 0.51 11.1 0.1 2.9 3 1 0 3 3 2 0 AAA domain RNA_helicase PF00910.17 gi|330507975|ref|YP_004384403.1| - 0.019 15.1 0.2 5.2 7.3 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Miro PF08477.8 gi|330507975|ref|YP_004384403.1| - 0.034 14.6 0.4 0.26 11.8 0.1 2.2 2 0 0 2 2 2 0 Miro-like protein AAA_14 PF13173.1 gi|330507975|ref|YP_004384403.1| - 0.035 14.0 0.2 5.3 6.9 0.0 3.2 3 0 0 3 3 3 0 AAA domain Fer4_17 PF13534.1 gi|330507975|ref|YP_004384403.1| - 0.069 13.5 0.4 0.069 13.5 0.3 2.3 2 0 0 2 2 1 0 4Fe-4S dicluster domain AAA PF00004.24 gi|330507975|ref|YP_004384403.1| - 0.091 12.9 0.6 17 5.5 0.1 3.0 4 0 0 4 4 2 0 ATPase family associated with various cellular activities (AAA) Fer4_4 PF12800.2 gi|330507975|ref|YP_004384403.1| - 0.2 12.0 12.8 0.042 14.1 1.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain NB-ARC PF00931.17 gi|330507975|ref|YP_004384403.1| - 0.22 10.3 0.1 1.6 7.5 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|330507975|ref|YP_004384403.1| - 0.27 10.9 0.7 5.9 6.5 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Fer4_8 PF13183.1 gi|330507975|ref|YP_004384403.1| - 0.53 10.3 7.5 0.21 11.6 1.3 1.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_28 PF13521.1 gi|330507975|ref|YP_004384403.1| - 0.68 9.8 2.3 24 4.8 0.1 3.3 4 0 0 4 4 4 0 AAA domain Fer4_18 PF13746.1 gi|330507975|ref|YP_004384403.1| - 0.92 9.9 8.8 0.17 12.3 2.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Cm_res_leader PF08077.6 gi|330507975|ref|YP_004384403.1| - 1.4 8.8 6.4 0.61 9.9 0.1 2.8 3 0 0 3 3 2 0 Chloramphenicol resistance gene leader peptide AAA_18 PF13238.1 gi|330507975|ref|YP_004384403.1| - 1.6 9.0 4.0 40 4.5 0.0 3.2 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|330507975|ref|YP_004384403.1| - 2 8.5 4.5 14 5.8 0.1 3.1 3 1 0 3 3 3 0 AAA domain Fer4_3 PF12798.2 gi|330507975|ref|YP_004384403.1| - 7.2 7.4 16.2 0.053 14.1 4.0 2.3 2 0 0 2 2 1 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330507975|ref|YP_004384403.1| - 8.7 6.9 7.6 1.6 9.3 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain AAA_33 PF13671.1 gi|330507975|ref|YP_004384403.1| - 9.1 6.1 6.2 19 5.1 0.0 3.4 4 1 0 4 4 3 0 AAA domain FUSC_2 PF13515.1 gi|330507976|ref|YP_004384404.1| - 0.02 14.8 0.1 0.028 14.3 0.1 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein-like PIN PF01850.16 gi|330507977|ref|YP_004384405.1| - 0.00011 22.4 1.6 0.00015 22.0 1.1 1.2 1 0 0 1 1 1 1 PIN domain UPF0278 PF08745.6 gi|330507977|ref|YP_004384405.1| - 0.003 16.8 0.2 0.0059 15.8 0.1 1.4 1 1 0 1 1 1 1 UPF0278 family NOB1_Zn_bind PF08772.6 gi|330507977|ref|YP_004384405.1| - 0.054 13.3 4.0 0.11 12.3 2.8 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Prok-RING_1 PF14446.1 gi|330507977|ref|YP_004384405.1| - 0.066 12.9 3.7 0.1 12.3 2.6 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|330507977|ref|YP_004384405.1| - 0.42 10.4 6.7 0.83 9.5 4.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|330507977|ref|YP_004384405.1| - 0.59 10.1 7.1 63 3.6 4.9 2.3 1 1 0 1 1 1 0 Zinc ribbon domain RecR PF02132.10 gi|330507977|ref|YP_004384405.1| - 0.79 9.2 3.7 0.32 10.4 0.5 1.9 2 0 0 2 2 2 0 RecR protein Pribosyltran PF00156.22 gi|330507978|ref|YP_004384406.1| - 1.1e-23 83.3 0.3 1.7e-23 82.7 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|330507978|ref|YP_004384406.1| - 7.9e-05 21.9 0.1 0.0001 21.5 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.1 gi|330507978|ref|YP_004384406.1| - 0.016 14.9 0.2 0.035 13.8 0.1 1.6 2 0 0 2 2 2 0 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.1 gi|330507978|ref|YP_004384406.1| - 0.047 12.9 0.7 0.14 11.4 0.1 1.8 1 1 1 2 2 2 0 Phosphoribosyl transferase Tautomerase PF01361.16 gi|330507978|ref|YP_004384406.1| - 0.056 13.0 0.0 0.22 11.1 0.0 2.0 2 0 0 2 2 2 0 Tautomerase enzyme GerE PF00196.14 gi|330507978|ref|YP_004384406.1| - 0.057 12.7 0.0 0.21 10.9 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.14 gi|330507978|ref|YP_004384406.1| - 0.13 12.1 0.2 1 9.3 0.0 2.4 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain tRNA-synt_2c PF01411.14 gi|330507979|ref|YP_004384407.1| - 1.1e-117 393.6 0.0 1.6e-117 393.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|330507979|ref|YP_004384407.1| - 1.7e-14 53.4 0.9 3.8e-14 52.2 0.6 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|330507979|ref|YP_004384407.1| - 4.5e-09 35.8 5.0 1.5e-08 34.2 3.5 1.9 1 0 0 1 1 1 1 DHHA1 domain DUF433 PF04255.9 gi|330507980|ref|YP_004384408.1| - 8.3e-23 79.5 0.1 1.2e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF433) Mut7-C PF01927.11 gi|330507981|ref|YP_004384409.1| - 3.2e-06 27.1 0.0 3.2e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain ABC_tran PF00005.22 gi|330507982|ref|YP_004384410.1| - 1e-31 110.0 0.0 1.4e-31 109.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330507982|ref|YP_004384410.1| - 3.5e-15 56.7 0.0 2.9e-08 34.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330507982|ref|YP_004384410.1| - 6.1e-09 35.4 0.0 2.3e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|330507982|ref|YP_004384410.1| - 4.5e-05 22.8 0.0 7.3e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|330507982|ref|YP_004384410.1| - 0.00022 20.3 0.3 0.032 13.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|330507982|ref|YP_004384410.1| - 0.00027 21.1 0.7 0.064 13.3 0.0 2.7 2 1 0 3 3 3 1 AAA domain DUF258 PF03193.11 gi|330507982|ref|YP_004384410.1| - 0.00049 19.3 0.0 0.00081 18.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NTPase_1 PF03266.10 gi|330507982|ref|YP_004384410.1| - 0.00055 19.6 0.2 0.15 11.7 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_25 PF13481.1 gi|330507982|ref|YP_004384410.1| - 0.0013 18.1 0.1 0.0046 16.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|330507982|ref|YP_004384410.1| - 0.0023 17.7 0.2 0.011 15.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330507982|ref|YP_004384410.1| - 0.0029 17.6 0.0 0.0053 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|330507982|ref|YP_004384410.1| - 0.0042 17.3 1.0 0.15 12.3 0.2 2.3 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|330507982|ref|YP_004384410.1| - 0.0045 16.4 0.0 0.015 14.7 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|330507982|ref|YP_004384410.1| - 0.011 16.5 0.1 0.053 14.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|330507982|ref|YP_004384410.1| - 0.015 15.6 0.3 0.017 15.4 0.2 1.4 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|330507982|ref|YP_004384410.1| - 0.017 14.8 0.0 0.097 12.4 0.0 2.2 3 0 0 3 3 2 0 Part of AAA domain SbcCD_C PF13558.1 gi|330507982|ref|YP_004384410.1| - 0.022 14.6 0.0 0.11 12.3 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|330507982|ref|YP_004384410.1| - 0.022 14.6 0.4 0.06 13.3 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF1341 PF07071.6 gi|330507982|ref|YP_004384410.1| - 0.05 13.1 0.0 0.069 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1341) NB-ARC PF00931.17 gi|330507982|ref|YP_004384410.1| - 0.07 11.9 0.0 0.18 10.6 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|330507982|ref|YP_004384410.1| - 0.074 12.7 0.1 0.59 9.8 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|330507982|ref|YP_004384410.1| - 0.12 11.7 0.1 0.97 8.8 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein HAD PF12710.2 gi|330507982|ref|YP_004384410.1| - 0.12 12.5 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA_13 PF13166.1 gi|330507982|ref|YP_004384410.1| - 0.14 10.6 0.0 7.3 4.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain Gram_pos_anchor PF00746.16 gi|330507983|ref|YP_004384411.1| - 0.0092 15.7 1.7 0.0092 15.7 1.2 2.4 2 0 0 2 2 2 1 Gram positive anchor MacB_PCD PF12704.2 gi|330507984|ref|YP_004384412.1| - 1.8e-36 125.8 1.2 1.8e-36 125.8 0.8 2.6 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|330507984|ref|YP_004384412.1| - 2.4e-25 88.6 11.8 5e-24 84.3 4.6 2.2 2 0 0 2 2 2 2 FtsX-like permease family DUF4097 PF13349.1 gi|330507985|ref|YP_004384413.1| - 0.02 14.4 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) dTMP_synthase PF02593.9 gi|330507986|ref|YP_004384414.1| - 2.7e-66 223.0 0.0 3.1e-66 222.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Peripla_BP_4 PF13407.1 gi|330507986|ref|YP_004384414.1| - 0.096 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain Fer4 PF00037.22 gi|330507987|ref|YP_004384415.1| - 5e-11 41.7 14.5 8e-07 28.4 2.5 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330507987|ref|YP_004384415.1| - 3e-08 33.8 6.8 3e-08 33.8 4.7 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330507987|ref|YP_004384415.1| - 1.9e-07 30.6 2.0 1.9e-07 30.6 1.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330507987|ref|YP_004384415.1| - 3.1e-07 30.5 4.9 7.8e-07 29.2 3.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330507987|ref|YP_004384415.1| - 1.4e-06 28.0 5.5 1.4e-06 28.0 3.8 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330507987|ref|YP_004384415.1| - 2.5e-06 27.1 5.3 2.5e-06 27.1 3.7 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330507987|ref|YP_004384415.1| - 4.5e-06 27.3 4.9 0.037 14.7 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|330507987|ref|YP_004384415.1| - 4.7e-05 23.0 3.3 4.7e-05 23.0 2.3 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330507987|ref|YP_004384415.1| - 0.0019 18.4 1.4 0.32 11.3 0.3 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330507987|ref|YP_004384415.1| - 0.011 16.0 3.2 0.011 16.0 2.2 3.2 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330507987|ref|YP_004384415.1| - 0.013 16.0 8.4 0.013 16.0 5.9 2.8 2 1 0 2 2 1 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|330507987|ref|YP_004384415.1| - 0.053 13.4 0.8 0.12 12.2 0.5 1.8 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330507987|ref|YP_004384415.1| - 0.19 12.1 6.7 0.45 10.9 1.2 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330507987|ref|YP_004384415.1| - 0.27 11.2 8.8 1.2 9.2 4.9 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|330507987|ref|YP_004384415.1| - 0.94 9.3 4.3 6.6 6.6 3.0 2.2 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_3 PF12798.2 gi|330507987|ref|YP_004384415.1| - 2.3 8.9 26.5 0.14 12.7 3.9 3.5 4 0 0 4 4 3 0 4Fe-4S binding domain Prismane PF03063.15 gi|330507988|ref|YP_004384416.1| - 3.8e-122 408.3 0.0 6.6e-103 344.8 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family HxlR PF01638.12 gi|330507989|ref|YP_004384417.1| - 9.7e-23 79.6 1.2 1.1e-22 79.3 0.9 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.2 gi|330507989|ref|YP_004384417.1| - 0.0011 18.7 0.1 0.0016 18.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|330507989|ref|YP_004384417.1| - 0.0018 18.0 0.0 0.0023 17.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|330507989|ref|YP_004384417.1| - 0.0069 16.3 0.1 0.0093 15.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|330507989|ref|YP_004384417.1| - 0.0088 15.7 0.1 0.019 14.6 0.1 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain MarR_2 PF12802.2 gi|330507989|ref|YP_004384417.1| - 0.013 15.1 0.1 0.036 13.7 0.1 1.8 1 1 1 2 2 2 0 MarR family HTH_24 PF13412.1 gi|330507989|ref|YP_004384417.1| - 0.041 13.2 0.1 0.092 12.1 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2513 PF10711.4 gi|330507989|ref|YP_004384417.1| - 0.041 13.9 0.0 0.049 13.7 0.0 1.1 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF505 PF04458.7 gi|330507989|ref|YP_004384417.1| - 0.044 11.9 0.1 0.055 11.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_45 PF14947.1 gi|330507989|ref|YP_004384417.1| - 0.062 13.1 0.2 0.15 11.9 0.2 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DUF4423 PF14394.1 gi|330507989|ref|YP_004384417.1| - 0.11 12.0 0.1 0.12 11.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) OrfB_IS605 PF01385.14 gi|330507990|ref|YP_004384418.1| - 2.2e-11 43.5 2.2 3.2e-11 43.0 1.6 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330507990|ref|YP_004384418.1| - 7.7e-06 25.4 0.0 2.8e-05 23.6 0.0 2.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Methyltransf_31 PF13847.1 gi|330507992|ref|YP_004384420.1| - 7.8e-11 41.7 0.0 9.8e-11 41.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330507992|ref|YP_004384420.1| - 7.8e-11 42.5 0.2 1.5e-10 41.5 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|330507992|ref|YP_004384420.1| - 3.6e-10 39.3 0.0 5.1e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|330507992|ref|YP_004384420.1| - 6.6e-10 39.3 0.0 1.2e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330507992|ref|YP_004384420.1| - 1.1e-08 35.3 0.0 2.2e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330507992|ref|YP_004384420.1| - 2.8e-08 34.1 0.0 4.7e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330507992|ref|YP_004384420.1| - 4.2e-08 33.2 0.0 1e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330507992|ref|YP_004384420.1| - 7.6e-08 31.7 0.0 1.1e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|330507992|ref|YP_004384420.1| - 1.8e-07 31.0 0.0 3.4e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|330507992|ref|YP_004384420.1| - 4.4e-06 26.3 0.0 1.1e-05 25.0 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|330507992|ref|YP_004384420.1| - 0.00092 18.6 0.0 0.0023 17.3 0.0 1.7 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW FmrO PF07091.6 gi|330507992|ref|YP_004384420.1| - 0.012 14.6 0.0 0.018 14.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DUF633 PF04816.7 gi|330507992|ref|YP_004384420.1| - 0.02 14.2 0.0 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF633) MTS PF05175.9 gi|330507992|ref|YP_004384420.1| - 0.042 13.2 0.0 0.07 12.5 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase small domain UPF0020 PF01170.13 gi|330507992|ref|YP_004384420.1| - 0.049 13.2 0.0 0.079 12.5 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TPR_1 PF00515.23 gi|330507994|ref|YP_004384422.1| - 3.6e-69 225.7 20.9 1.1e-10 40.6 0.3 8.0 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330507994|ref|YP_004384422.1| - 2.6e-61 203.1 19.4 2.6e-19 68.6 0.6 5.0 3 2 1 5 5 5 4 TPR repeat TPR_2 PF07719.12 gi|330507994|ref|YP_004384422.1| - 5.1e-56 182.1 18.1 6.6e-08 31.9 0.3 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330507994|ref|YP_004384422.1| - 2e-48 158.5 14.1 9.9e-07 28.4 0.0 7.7 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330507994|ref|YP_004384422.1| - 7.1e-43 144.4 5.5 1.7e-10 41.2 1.4 4.7 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330507994|ref|YP_004384422.1| - 1.1e-40 134.3 19.7 1.4e-05 24.5 0.2 8.2 6 2 2 8 8 8 8 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330507994|ref|YP_004384422.1| - 4.2e-34 116.3 9.2 3.8e-09 36.3 0.0 6.2 2 2 2 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330507994|ref|YP_004384422.1| - 4.3e-34 113.8 3.0 0.00013 22.2 0.0 7.3 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330507994|ref|YP_004384422.1| - 2.1e-22 79.2 7.6 1e-06 28.9 0.0 5.0 2 2 2 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330507994|ref|YP_004384422.1| - 3.4e-20 70.1 6.4 0.0062 16.2 0.0 7.8 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330507994|ref|YP_004384422.1| - 6.8e-20 70.6 0.0 1.5e-05 24.7 0.0 5.0 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330507994|ref|YP_004384422.1| - 3.1e-19 68.0 6.5 0.25 11.8 0.0 7.8 8 0 0 8 8 7 6 Tetratricopeptide repeat Apc3 PF12895.2 gi|330507994|ref|YP_004384422.1| - 7.6e-18 64.4 4.4 7e-05 22.8 0.1 4.1 2 1 2 5 5 4 4 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|330507994|ref|YP_004384422.1| - 1.4e-10 41.1 5.6 0.29 10.9 0.1 6.7 3 2 5 8 8 8 3 Domain of Unknown Function (DUF3856) MIT PF04212.13 gi|330507994|ref|YP_004384422.1| - 2.2e-10 40.2 11.3 0.063 13.1 0.0 6.3 6 1 1 7 7 7 3 MIT (microtubule interacting and transport) domain TPR_10 PF13374.1 gi|330507994|ref|YP_004384422.1| - 1.1e-07 31.5 5.0 4.1 7.4 0.1 6.2 6 0 0 6 6 6 1 Tetratricopeptide repeat BTAD PF03704.12 gi|330507994|ref|YP_004384422.1| - 1.1e-07 32.2 0.0 0.084 13.1 0.0 4.0 2 1 1 3 3 3 3 Bacterial transcriptional activator domain TPR_15 PF13429.1 gi|330507994|ref|YP_004384422.1| - 1e-06 28.0 4.2 0.00047 19.2 0.6 3.1 1 1 3 4 4 4 3 Tetratricopeptide repeat FAT PF02259.18 gi|330507994|ref|YP_004384422.1| - 5.2e-06 25.6 7.0 0.6 9.0 0.0 5.4 1 1 3 4 4 4 3 FAT domain NARP1 PF12569.3 gi|330507994|ref|YP_004384422.1| - 4.9e-05 22.2 2.4 0.45 9.1 0.0 3.7 2 2 1 3 3 3 2 NMDA receptor-regulated protein 1 TPR_3 PF07720.7 gi|330507994|ref|YP_004384422.1| - 0.00043 20.0 8.5 2.3 8.1 0.1 5.5 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|330507994|ref|YP_004384422.1| - 0.00077 19.4 14.4 2.9 7.8 0.0 5.5 4 1 0 5 5 5 1 Tetratricopeptide repeat Peptidase_M15_4 PF13539.1 gi|330507994|ref|YP_004384422.1| - 0.001 19.4 3.0 0.89 10.0 0.6 3.2 1 1 1 3 3 3 2 D-alanyl-D-alanine carboxypeptidase TPR_5 PF12688.2 gi|330507994|ref|YP_004384422.1| - 0.0022 18.0 0.3 0.33 10.9 0.2 3.6 2 1 1 3 3 3 1 Tetratrico peptide repeat TPR_4 PF07721.9 gi|330507994|ref|YP_004384422.1| - 0.01 16.2 1.9 42 4.9 0.0 5.4 6 0 0 6 6 5 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330507994|ref|YP_004384422.1| - 0.13 12.1 0.3 5.9 6.8 0.0 3.4 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat Lambda_Kil PF06301.6 gi|330507994|ref|YP_004384422.1| - 0.46 9.9 8.0 30 4.1 0.0 5.1 5 1 1 6 6 6 0 Bacteriophage lambda Kil protein EVE PF01878.13 gi|330507995|ref|YP_004384423.1| - 0.00071 19.6 0.0 0.0024 17.9 0.0 2.0 1 1 0 1 1 1 1 EVE domain ResIII PF04851.10 gi|330507996|ref|YP_004384424.1| - 1.4e-24 86.9 0.0 2.6e-24 86.0 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|330507996|ref|YP_004384424.1| - 0.00058 19.4 0.0 0.0035 16.8 0.0 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase N6_N4_Mtase PF01555.13 gi|330507997|ref|YP_004384425.1| - 9.9e-41 139.7 0.1 2.8e-40 138.2 0.0 1.7 2 0 0 2 2 2 1 DNA methylase Methyltransf_26 PF13659.1 gi|330507997|ref|YP_004384425.1| - 3.7e-05 23.7 1.6 0.0033 17.4 1.1 2.7 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|330507997|ref|YP_004384425.1| - 0.011 15.0 0.0 0.5 9.7 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase small domain MethyltransfD12 PF02086.10 gi|330507997|ref|YP_004384425.1| - 0.036 13.5 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.10 gi|330507997|ref|YP_004384425.1| - 0.11 11.8 0.0 1 8.6 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical protein 95 DUF3800 PF12686.2 gi|330507998|ref|YP_004384426.1| - 5.1e-23 81.9 4.7 5.9e-23 81.7 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3800) RHS PF03527.9 gi|330507999|ref|YP_004384427.1| - 0.021 14.6 0.5 0.051 13.3 0.0 1.7 2 0 0 2 2 2 0 RHS protein Fic PF02661.13 gi|330508000|ref|YP_004384428.1| - 9.9e-06 26.1 0.2 0.00018 22.1 0.0 2.6 2 1 0 2 2 2 1 Fic/DOC family UPF0150 PF03681.10 gi|330508001|ref|YP_004384429.1| - 1.6e-07 30.8 0.5 2.2e-07 30.4 0.3 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF4277 PF14104.1 gi|330508002|ref|YP_004384430.1| - 1.5e-39 134.7 0.0 3.1e-39 133.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|330508002|ref|YP_004384430.1| - 6.3e-09 35.6 0.2 4.9e-08 32.7 0.1 2.1 1 1 0 1 1 1 1 Transposase DDE domain CDC27 PF09507.5 gi|330508002|ref|YP_004384430.1| - 0.037 13.2 0.0 0.052 12.7 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 HhH-GPD PF00730.20 gi|330508003|ref|YP_004384431.1| - 2.1e-17 63.3 0.0 2.8e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|330508003|ref|YP_004384431.1| - 0.0004 19.9 0.0 0.0012 18.4 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|330508003|ref|YP_004384431.1| - 0.015 15.4 0.2 0.11 12.7 0.0 2.5 2 1 0 2 2 2 0 Helix-hairpin-helix domain DUF2400 PF09674.5 gi|330508003|ref|YP_004384431.1| - 0.054 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) EndIII_4Fe-2S PF10576.4 gi|330508003|ref|YP_004384431.1| - 2 8.7 6.4 5.3 7.3 4.4 1.8 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III DUF4010 PF13194.1 gi|330508004|ref|YP_004384432.1| - 2.1e-61 206.9 19.3 2.1e-61 206.9 13.4 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|330508004|ref|YP_004384432.1| - 3.3e-10 39.9 10.8 3.3e-10 39.9 7.5 2.8 3 0 0 3 3 3 1 MgtC family SSF PF00474.12 gi|330508005|ref|YP_004384433.1| - 6.4e-52 176.5 33.6 1.1e-51 175.8 23.3 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family DEDD_Tnp_IS110 PF01548.12 gi|330508006|ref|YP_004384434.1| - 1.6e-29 102.4 0.0 1.1e-28 99.7 0.0 2.1 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.11 gi|330508006|ref|YP_004384434.1| - 2.2e-22 78.9 0.2 5.7e-22 77.6 0.0 1.8 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family SET_assoc PF11767.3 gi|330508006|ref|YP_004384434.1| - 0.0008 18.6 0.0 0.0019 17.4 0.0 1.6 1 0 0 1 1 1 1 Histone lysine methyltransferase SET associated Ish1 PF10281.4 gi|330508006|ref|YP_004384434.1| - 0.032 14.3 0.2 0.082 12.9 0.1 1.8 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein Hjc PF01870.13 gi|330508006|ref|YP_004384434.1| - 0.069 12.7 0.1 0.24 11.0 0.1 1.9 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) HHH_5 PF14520.1 gi|330508006|ref|YP_004384434.1| - 0.09 12.9 0.0 0.54 10.4 0.0 2.4 2 1 0 2 2 2 0 Helix-hairpin-helix domain OrfB_Zn_ribbon PF07282.6 gi|330508007|ref|YP_004384435.1| - 2.8e-26 90.9 0.7 6.2e-26 89.8 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330508007|ref|YP_004384435.1| - 1e-15 57.7 0.4 7e-15 55.0 0.2 2.0 1 1 0 1 1 1 1 Probable transposase IBR PF01485.16 gi|330508007|ref|YP_004384435.1| - 0.0073 16.1 0.6 0.017 15.0 0.4 1.5 1 0 0 1 1 1 1 IBR domain zf-Mss51 PF13824.1 gi|330508007|ref|YP_004384435.1| - 0.0098 15.7 0.2 0.026 14.3 0.1 1.8 1 0 0 1 1 1 1 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.7 gi|330508007|ref|YP_004384435.1| - 0.03 13.6 0.6 0.062 12.6 0.4 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zf-HC5HC2H_2 PF13832.1 gi|330508007|ref|YP_004384435.1| - 0.048 13.6 2.0 0.7 9.9 0.2 2.4 2 0 0 2 2 2 0 PHD-zinc-finger like domain C1_1 PF00130.17 gi|330508007|ref|YP_004384435.1| - 0.1 12.3 0.7 0.32 10.7 0.3 1.9 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Exonuc_VII_S PF02609.11 gi|330508007|ref|YP_004384435.1| - 0.12 12.2 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Exonuclease VII small subunit Zn_Tnp_IS1595 PF12760.2 gi|330508007|ref|YP_004384435.1| - 0.19 11.5 3.9 0.53 10.1 2.7 1.8 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF1610 PF07754.6 gi|330508007|ref|YP_004384435.1| - 9.3 6.4 9.9 0.15 12.2 0.6 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Inositol_P PF00459.20 gi|330508008|ref|YP_004384436.1| - 5.7e-33 114.3 0.0 7.1e-33 114.0 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|330508008|ref|YP_004384436.1| - 7.4e-05 21.7 0.0 0.00023 20.0 0.0 1.7 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase NAD_kinase PF01513.16 gi|330508009|ref|YP_004384437.1| - 2.4e-60 203.7 0.2 2.7e-60 203.5 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase PK_C PF02887.11 gi|330508009|ref|YP_004384437.1| - 0.062 12.8 0.1 9.3 5.8 0.0 2.8 3 0 0 3 3 3 0 Pyruvate kinase, alpha/beta domain Rb_C PF08934.5 gi|330508009|ref|YP_004384437.1| - 0.069 12.7 0.2 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Rb C-terminal domain ABC2_membrane_3 PF12698.2 gi|330508010|ref|YP_004384438.1| - 4e-44 151.0 17.0 4.5e-44 150.8 11.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|330508010|ref|YP_004384438.1| - 9.2e-31 106.6 26.1 1.1e-30 106.3 11.3 2.7 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|330508010|ref|YP_004384438.1| - 1.9e-16 59.7 2.0 3.6e-16 58.8 1.4 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|330508010|ref|YP_004384438.1| - 5.8e-05 22.3 6.3 5.8e-05 22.3 4.4 2.0 3 0 0 3 3 3 1 CcmB protein InaF-motif PF15018.1 gi|330508010|ref|YP_004384438.1| - 0.017 14.5 1.8 1.6 8.2 0.2 2.8 2 0 0 2 2 2 0 TRP-interacting helix ABC_tran PF00005.22 gi|330508011|ref|YP_004384439.1| - 1.7e-30 106.0 0.0 3.4e-30 105.1 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|330508011|ref|YP_004384439.1| - 8.9e-19 68.5 0.0 7.4e-11 42.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|330508011|ref|YP_004384439.1| - 6.3e-06 25.4 0.0 0.0013 17.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|330508011|ref|YP_004384439.1| - 8.8e-06 25.0 0.0 0.00039 19.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|330508011|ref|YP_004384439.1| - 1.9e-05 25.0 0.0 3.3e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|330508011|ref|YP_004384439.1| - 2.3e-05 23.8 0.0 5e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|330508011|ref|YP_004384439.1| - 2.8e-05 24.1 0.0 7.2e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|330508011|ref|YP_004384439.1| - 0.00046 20.0 0.0 0.0036 17.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|330508011|ref|YP_004384439.1| - 0.0012 18.3 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_24 PF13479.1 gi|330508011|ref|YP_004384439.1| - 0.002 17.7 0.0 0.011 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|330508011|ref|YP_004384439.1| - 0.0039 16.8 0.0 0.0074 15.9 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|330508011|ref|YP_004384439.1| - 0.0065 16.6 0.0 0.017 15.3 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|330508011|ref|YP_004384439.1| - 0.0076 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|330508011|ref|YP_004384439.1| - 0.0082 15.8 0.0 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|330508011|ref|YP_004384439.1| - 0.0093 16.1 0.0 0.036 14.2 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|330508011|ref|YP_004384439.1| - 0.013 14.9 0.0 0.039 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|330508011|ref|YP_004384439.1| - 0.018 14.7 0.3 0.069 12.8 0.0 2.0 2 1 0 2 2 2 0 Archaeal ATPase IstB_IS21 PF01695.12 gi|330508011|ref|YP_004384439.1| - 0.019 14.3 0.0 6.1 6.2 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|330508011|ref|YP_004384439.1| - 0.019 15.7 0.1 0.046 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|330508011|ref|YP_004384439.1| - 0.025 14.2 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KaiC PF06745.8 gi|330508011|ref|YP_004384439.1| - 0.063 12.3 0.0 6.7 5.7 0.0 2.3 2 0 0 2 2 2 0 KaiC AAA_5 PF07728.9 gi|330508011|ref|YP_004384439.1| - 0.074 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.12 gi|330508011|ref|YP_004384439.1| - 0.079 12.4 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|330508011|ref|YP_004384439.1| - 0.081 12.3 0.0 0.32 10.4 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|330508011|ref|YP_004384439.1| - 0.12 11.8 0.0 0.49 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|330508011|ref|YP_004384439.1| - 0.13 11.9 0.0 0.41 10.3 0.0 1.8 2 0 0 2 2 2 0 NTPase YbaB_DNA_bd PF02575.11 gi|330508011|ref|YP_004384439.1| - 0.15 12.0 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 YbaB/EbfC DNA-binding family DUF815 PF05673.8 gi|330508011|ref|YP_004384439.1| - 0.15 10.9 0.0 2.7 6.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) G-alpha PF00503.15 gi|330508011|ref|YP_004384439.1| - 0.21 10.2 0.0 0.28 9.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit NPCBM_assoc PF10633.4 gi|330508012|ref|YP_004384440.1| - 0.00033 20.6 0.0 0.11 12.5 0.0 3.1 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|330508012|ref|YP_004384440.1| - 0.00049 20.1 0.0 0.58 10.2 0.0 2.4 2 0 0 2 2 2 2 CARDB DUF11 PF01345.13 gi|330508012|ref|YP_004384440.1| - 0.00061 19.7 0.3 0.67 10.0 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function DUF11 DUF756 PF05506.7 gi|330508012|ref|YP_004384440.1| - 0.046 14.1 0.0 16 6.0 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF756) PEMT PF04191.8 gi|330508013|ref|YP_004384441.1| - 8.4e-08 32.2 0.5 8.4e-08 32.2 0.3 1.9 3 0 0 3 3 3 1 Phospholipid methyltransferase DUF1295 PF06966.7 gi|330508013|ref|YP_004384441.1| - 0.023 13.9 0.1 0.029 13.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1295) UPF0104 PF03706.8 gi|330508013|ref|YP_004384441.1| - 0.13 11.5 12.1 0.19 10.9 8.4 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF3366 PF11846.3 gi|330508013|ref|YP_004384441.1| - 0.68 9.7 7.1 0.1 12.4 1.6 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3366) NnrU PF07298.6 gi|330508013|ref|YP_004384441.1| - 1.1 8.5 9.0 0.52 9.6 3.2 1.9 1 1 0 2 2 2 0 NnrU protein EII-Sor PF03609.9 gi|330508013|ref|YP_004384441.1| - 1.4 8.1 7.4 0.054 12.7 1.3 1.4 2 0 0 2 2 2 0 PTS system sorbose-specific iic component Peptidase_U32 PF01136.14 gi|330508015|ref|YP_004384443.1| - 4.3e-95 317.0 0.0 1.2e-71 240.4 0.0 2.3 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|330508015|ref|YP_004384443.1| - 3.4e-24 85.2 0.0 8.1e-24 84.0 0.0 1.7 1 0 0 1 1 1 1 Collagenase DUF342 PF03961.8 gi|330508016|ref|YP_004384444.1| - 2.8 6.2 8.0 5.5 5.2 5.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF342) SpoU_methylase PF00588.14 gi|330508017|ref|YP_004384445.1| - 9.2e-28 96.8 0.0 1.3e-27 96.4 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|330508017|ref|YP_004384445.1| - 0.064 12.7 0.0 5.9 6.3 0.0 2.3 1 1 1 2 2 2 0 SAM-dependent RNA methyltransferase RtcB PF01139.12 gi|330508018|ref|YP_004384446.1| - 2.2e-146 488.1 0.0 2.5e-146 487.9 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.11 gi|330508019|ref|YP_004384447.1| - 1.6e-36 125.2 0.0 1.8e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Radical_SAM PF04055.16 gi|330508020|ref|YP_004384448.1| - 2.2e-08 34.4 0.0 2.2e-08 34.4 0.0 1.9 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330508020|ref|YP_004384448.1| - 7.5e-06 26.1 0.0 1.3e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330508020|ref|YP_004384448.1| - 7.5e-05 22.7 0.0 7.5e-05 22.7 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3895 PF13034.1 gi|330508021|ref|YP_004384449.1| - 0.06 12.8 0.1 0.081 12.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3895) tRNA-synt_2b PF00587.20 gi|330508022|ref|YP_004384450.1| - 3.3e-10 39.8 0.0 5.1e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DHHA1 PF02272.14 gi|330508024|ref|YP_004384452.1| - 3.5e-16 58.6 0.3 1.3e-13 50.4 0.1 2.5 2 0 0 2 2 2 2 DHHA1 domain DHH PF01368.15 gi|330508024|ref|YP_004384452.1| - 5.3e-10 39.1 0.0 1.2e-09 37.9 0.0 1.6 1 1 0 1 1 1 1 DHH family Ribosomal_S13_N PF08069.7 gi|330508025|ref|YP_004384453.1| - 9.7e-24 82.9 1.0 2.9e-23 81.4 0.7 1.8 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|330508025|ref|YP_004384453.1| - 2e-17 62.6 0.2 2.6e-17 62.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 CCDC66 PF15236.1 gi|330508025|ref|YP_004384453.1| - 0.0043 16.6 0.0 0.0062 16.1 0.0 1.2 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 66 MSA-2c PF12238.3 gi|330508025|ref|YP_004384453.1| - 0.098 12.3 0.2 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Merozoite surface antigen 2c DUF116 PF01976.12 gi|330508026|ref|YP_004384454.1| - 1.7e-47 160.8 0.0 2.1e-47 160.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 Fer4 PF00037.22 gi|330508027|ref|YP_004384455.1| - 4.8e-18 63.9 15.9 3.6e-09 35.8 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330508027|ref|YP_004384455.1| - 1.8e-13 50.0 28.1 2.3e-09 36.9 10.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330508027|ref|YP_004384455.1| - 3.4e-13 48.8 16.3 1.5e-06 27.8 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330508027|ref|YP_004384455.1| - 1.3e-12 47.7 26.9 7.5e-10 38.9 10.5 1.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330508027|ref|YP_004384455.1| - 1.6e-11 43.8 14.1 1.8e-11 43.6 9.7 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330508027|ref|YP_004384455.1| - 2.3e-11 43.9 13.8 2.9e-11 43.5 9.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330508027|ref|YP_004384455.1| - 2.9e-11 42.5 16.4 2.4e-06 27.1 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330508027|ref|YP_004384455.1| - 8.5e-11 42.4 15.1 1.1e-05 26.0 1.6 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|330508027|ref|YP_004384455.1| - 7.7e-08 32.7 15.5 1.4e-05 25.5 10.7 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|330508027|ref|YP_004384455.1| - 2.9e-07 30.2 15.1 0.00063 19.8 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330508027|ref|YP_004384455.1| - 8e-07 29.3 17.3 0.00094 19.5 3.4 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|330508027|ref|YP_004384455.1| - 4.3e-06 26.6 17.8 0.0001 22.2 12.4 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330508027|ref|YP_004384455.1| - 6.4e-06 26.4 16.9 0.0029 17.9 3.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330508027|ref|YP_004384455.1| - 8.7e-06 25.9 18.7 0.0032 17.9 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|330508027|ref|YP_004384455.1| - 1.3e-05 25.0 8.2 1.4e-05 24.8 5.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330508027|ref|YP_004384455.1| - 0.00085 19.6 16.2 0.052 13.9 2.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|330508027|ref|YP_004384455.1| - 0.019 14.7 7.4 0.024 14.4 5.1 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster GF_recep_IV PF14843.1 gi|330508027|ref|YP_004384455.1| - 0.25 10.9 12.4 0.43 10.2 8.6 1.5 1 1 0 1 1 1 0 Growth factor receptor domain IV Mut7-C PF01927.11 gi|330508027|ref|YP_004384455.1| - 8.6 6.3 8.6 10 6.1 5.9 1.0 1 0 0 1 1 1 0 Mut7-C RNAse domain NRDD PF13597.1 gi|330508028|ref|YP_004384456.1| - 1.1e-153 512.2 0.0 1.3e-153 511.9 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DUF2953 PF11167.3 gi|330508028|ref|YP_004384456.1| - 0.071 13.0 0.2 0.22 11.4 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2953) LysE PF01810.13 gi|330508029|ref|YP_004384457.1| - 5.5e-28 97.5 11.6 6.8e-28 97.2 8.1 1.1 1 0 0 1 1 1 1 LysE type translocator DUF4131 PF13567.1 gi|330508029|ref|YP_004384457.1| - 4.5 6.6 12.1 11 5.4 0.3 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) SBF PF01758.11 gi|330508030|ref|YP_004384458.1| - 0.0001 21.7 16.7 0.0001 21.7 11.6 2.6 1 1 0 2 2 2 1 Sodium Bile acid symporter family DUF95 PF01944.12 gi|330508031|ref|YP_004384459.1| - 4.9e-30 104.4 15.5 5.7e-30 104.2 10.8 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 Ninjurin PF04923.7 gi|330508031|ref|YP_004384459.1| - 0.21 11.3 1.8 9.9 5.9 0.1 2.2 2 0 0 2 2 2 0 Ninjurin BC10 PF06726.7 gi|330508031|ref|YP_004384459.1| - 5.6 7.0 6.6 10 6.1 0.4 2.7 3 0 0 3 3 3 0 Bladder cancer-related protein BC10 DUF2975 PF11188.3 gi|330508031|ref|YP_004384459.1| - 9.7 5.9 12.6 0.1 12.2 2.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2975) tRNA-synt_2b PF00587.20 gi|330508032|ref|YP_004384460.1| - 3.6e-20 72.2 0.2 1.8e-19 69.9 0.1 1.9 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|330508032|ref|YP_004384460.1| - 1.5e-19 69.7 0.1 3.2e-19 68.6 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|330508032|ref|YP_004384460.1| - 2.1e-11 43.5 2.8 6.1e-11 42.0 0.2 2.5 3 0 0 3 3 3 1 Prolyl-tRNA synthetase, C-terminal ProRS-C_2 PF09181.5 gi|330508032|ref|YP_004384460.1| - 0.028 14.3 0.0 0.066 13.1 0.0 1.6 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal FMN_red PF03358.10 gi|330508033|ref|YP_004384461.1| - 6.3e-28 97.1 0.0 8.4e-28 96.7 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|330508033|ref|YP_004384461.1| - 2e-13 50.3 0.0 2.6e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold AMMECR1 PF01871.12 gi|330508034|ref|YP_004384462.1| - 6.8e-57 191.3 0.0 8.1e-57 191.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 tRNA-synt_His PF13393.1 gi|330508036|ref|YP_004384464.1| - 1.3e-62 211.6 2.4 9.7e-47 159.5 0.1 2.1 2 0 0 2 2 2 2 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|330508036|ref|YP_004384464.1| - 1.7e-24 86.3 0.0 3.4e-24 85.3 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|330508036|ref|YP_004384464.1| - 1.3e-09 37.8 0.0 2.6e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|330508036|ref|YP_004384464.1| - 1.4e-05 24.0 0.1 0.0038 16.0 0.0 3.0 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|330508036|ref|YP_004384464.1| - 0.0001 21.6 0.0 0.0019 17.4 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) DEAD PF00270.24 gi|330508037|ref|YP_004384465.1| - 1.2e-46 158.3 0.0 4.7e-45 153.1 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|330508037|ref|YP_004384465.1| - 2.6e-29 100.8 2.0 2.8e-29 100.7 0.5 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1253 PF06862.7 gi|330508037|ref|YP_004384465.1| - 1.8e-06 26.6 0.0 5.1e-05 21.8 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1253) ResIII PF04851.10 gi|330508037|ref|YP_004384465.1| - 9.4e-05 22.3 0.3 0.00053 19.8 0.0 2.3 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|330508037|ref|YP_004384465.1| - 0.001 18.7 0.3 0.052 13.3 0.1 2.8 2 0 0 2 2 2 1 Part of AAA domain Shikimate_DH PF01488.15 gi|330508037|ref|YP_004384465.1| - 0.019 15.0 0.2 0.2 11.7 0.1 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase SMC_N PF02463.14 gi|330508037|ref|YP_004384465.1| - 0.039 13.1 0.1 0.086 12.0 0.0 1.6 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Helicase_C_2 PF13307.1 gi|330508037|ref|YP_004384465.1| - 0.079 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Helicase C-terminal domain Helicase_RecD PF05127.9 gi|330508037|ref|YP_004384465.1| - 0.09 12.4 0.1 8.4 5.9 0.0 2.5 2 1 0 2 2 2 0 Helicase MutS_V PF00488.16 gi|330508039|ref|YP_004384467.1| - 9.5e-10 38.2 0.0 1.5e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_21 PF13304.1 gi|330508039|ref|YP_004384467.1| - 0.0097 15.8 0.0 5.6 6.8 0.1 2.5 2 0 0 2 2 2 2 AAA domain Phage_DsbA PF11126.3 gi|330508039|ref|YP_004384467.1| - 0.041 13.9 0.4 0.13 12.3 0.2 1.8 2 0 0 2 2 2 0 Transcriptional regulator DsbA SRP54 PF00448.17 gi|330508039|ref|YP_004384467.1| - 0.065 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Methyltransf_25 PF13649.1 gi|330508040|ref|YP_004384468.1| - 0.0014 18.9 0.0 0.0028 17.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330508040|ref|YP_004384468.1| - 0.02 15.4 0.0 0.12 13.0 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain TrmB PF01978.14 gi|330508041|ref|YP_004384469.1| - 0.00027 20.5 0.2 0.0009 18.9 0.1 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|330508041|ref|YP_004384469.1| - 0.00042 20.2 0.0 0.00098 19.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|330508041|ref|YP_004384469.1| - 0.025 14.3 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF387 PF04079.11 gi|330508041|ref|YP_004384469.1| - 0.03 13.6 0.1 0.056 12.8 0.0 1.4 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) tRNA-synt_1b PF00579.20 gi|330508042|ref|YP_004384470.1| - 3.7e-41 141.1 0.0 2.1e-23 82.8 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Peripla_BP_2 PF01497.13 gi|330508043|ref|YP_004384471.1| - 5.6e-27 94.4 0.1 8.1e-27 93.8 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.13 gi|330508043|ref|YP_004384471.1| - 0.052 13.2 1.3 1.7 8.4 0.3 3.1 2 0 0 2 2 2 0 Dockerin type I repeat EF-hand_5 PF13202.1 gi|330508043|ref|YP_004384471.1| - 0.11 11.8 1.8 6.4 6.3 0.1 2.7 2 0 0 2 2 2 0 EF hand Peripla_BP_2 PF01497.13 gi|330508044|ref|YP_004384472.1| - 7.3e-31 107.1 0.0 1e-30 106.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|330508045|ref|YP_004384473.1| - 1.4e-29 102.9 0.0 1.9e-29 102.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Phage_HK97_TLTM PF06120.6 gi|330508045|ref|YP_004384473.1| - 0.18 11.1 0.0 0.3 10.3 0.0 1.2 1 0 0 1 1 1 0 Tail length tape measure protein MC1 PF05854.6 gi|330508046|ref|YP_004384474.1| - 3.7e-40 135.7 1.7 4.2e-40 135.6 1.1 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 SSXRD PF09514.5 gi|330508046|ref|YP_004384474.1| - 0.37 10.1 1.5 0.47 9.8 0.3 1.7 1 1 1 2 2 2 0 SSXRD motif ABC_tran PF00005.22 gi|330508047|ref|YP_004384475.1| - 2.2e-32 112.2 0.0 3.7e-32 111.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|330508047|ref|YP_004384475.1| - 6.4e-12 45.4 9.7 8.6e-12 45.0 6.7 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|330508047|ref|YP_004384475.1| - 8.4e-08 31.7 0.2 4.3e-05 22.8 0.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|330508047|ref|YP_004384475.1| - 1.4e-06 28.5 0.1 0.024 14.6 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|330508047|ref|YP_004384475.1| - 0.00045 19.6 0.1 0.0012 18.3 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|330508047|ref|YP_004384475.1| - 0.00055 19.9 0.3 0.002 18.1 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|330508047|ref|YP_004384475.1| - 0.0066 15.0 0.0 0.014 14.0 0.0 1.5 1 0 0 1 1 1 1 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|330508047|ref|YP_004384475.1| - 0.016 14.4 0.0 0.03 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|330508047|ref|YP_004384475.1| - 0.042 14.0 0.0 0.12 12.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|330508047|ref|YP_004384475.1| - 0.073 12.4 0.2 0.36 10.1 0.0 2.2 3 0 0 3 3 3 0 AAA domain MobB PF03205.9 gi|330508047|ref|YP_004384475.1| - 0.14 11.8 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|330508047|ref|YP_004384475.1| - 0.17 12.1 0.0 0.35 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|330508048|ref|YP_004384476.1| - 6.1e-33 114.0 0.0 1e-32 113.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|330508048|ref|YP_004384476.1| - 3.6e-09 36.4 6.7 5e-09 35.9 4.6 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|330508048|ref|YP_004384476.1| - 6.2e-08 32.1 0.0 3.5e-06 26.4 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|330508048|ref|YP_004384476.1| - 3.4e-05 23.9 0.0 0.029 14.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|330508048|ref|YP_004384476.1| - 0.00019 21.4 0.5 0.00044 20.2 0.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|330508048|ref|YP_004384476.1| - 0.0016 17.6 0.0 0.003 16.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|330508048|ref|YP_004384476.1| - 0.0025 17.3 0.3 0.0066 15.9 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|330508048|ref|YP_004384476.1| - 0.003 16.2 0.4 0.0075 14.9 0.0 1.7 2 0 0 2 2 2 1 Predicted ATPase of the ABC class MMR_HSR1 PF01926.18 gi|330508048|ref|YP_004384476.1| - 0.02 14.8 0.0 0.055 13.4 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|330508048|ref|YP_004384476.1| - 0.03 14.2 0.3 0.23 11.3 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TrwB_AAD_bind PF10412.4 gi|330508048|ref|YP_004384476.1| - 0.034 12.7 0.0 1.6 7.2 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|330508048|ref|YP_004384476.1| - 0.043 13.9 0.0 1.9 8.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|330508048|ref|YP_004384476.1| - 0.056 14.2 1.4 0.17 12.6 1.0 1.9 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|330508048|ref|YP_004384476.1| - 0.11 11.5 0.0 0.25 10.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|330508048|ref|YP_004384476.1| - 0.12 11.7 0.1 0.31 10.4 0.1 1.7 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|330508048|ref|YP_004384476.1| - 0.14 11.8 0.0 0.45 10.2 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B Dynamin_N PF00350.18 gi|330508048|ref|YP_004384476.1| - 0.15 11.8 0.1 0.35 10.6 0.0 1.6 2 0 0 2 2 2 0 Dynamin family AAA_19 PF13245.1 gi|330508048|ref|YP_004384476.1| - 0.52 10.1 3.5 1.6 8.5 0.0 3.4 4 0 0 4 4 4 0 Part of AAA domain Gate PF07670.9 gi|330508049|ref|YP_004384477.1| - 0.093 12.6 7.1 0.21 11.5 4.6 1.9 2 1 0 2 2 2 0 Nucleoside recognition FmdE PF02663.9 gi|330508050|ref|YP_004384478.1| - 2e-18 66.5 0.0 3e-18 65.9 0.0 1.3 1 1 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ABC_tran PF00005.22 gi|330508051|ref|YP_004384479.1| - 4.4e-25 88.5 0.0 5.9e-25 88.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330508051|ref|YP_004384479.1| - 1e-07 32.2 0.0 0.00042 20.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|330508051|ref|YP_004384479.1| - 5.4e-05 23.0 1.1 0.003 17.4 0.7 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|330508051|ref|YP_004384479.1| - 0.00039 20.8 0.0 0.00067 20.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330508051|ref|YP_004384479.1| - 0.0018 17.5 0.1 0.64 9.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|330508051|ref|YP_004384479.1| - 0.022 14.2 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MutS_V PF00488.16 gi|330508051|ref|YP_004384479.1| - 0.023 14.0 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 MutS domain V NTPase_1 PF03266.10 gi|330508051|ref|YP_004384479.1| - 0.026 14.2 0.4 0.76 9.4 0.3 2.2 1 1 0 1 1 1 0 NTPase Zeta_toxin PF06414.7 gi|330508051|ref|YP_004384479.1| - 0.044 12.8 0.0 0.053 12.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.1 gi|330508051|ref|YP_004384479.1| - 0.057 13.3 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC-3 PF00950.12 gi|330508052|ref|YP_004384480.1| - 1.2e-46 159.1 40.1 1.3e-46 158.9 27.8 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|330508052|ref|YP_004384480.1| - 2.9e-06 26.3 19.9 2.9e-06 26.3 13.8 2.1 1 1 1 2 2 2 1 FecCD transport family DUF169 PF02596.10 gi|330508053|ref|YP_004384481.1| - 3.3e-16 59.3 0.1 4.2e-16 58.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 TroA PF01297.12 gi|330508054|ref|YP_004384482.1| - 2.3e-09 36.8 2.0 2.3e-08 33.6 1.4 1.9 1 1 0 1 1 1 1 Periplasmic solute binding protein family Response_reg PF00072.19 gi|330508055|ref|YP_004384483.1| - 4e-25 88.0 0.0 4.7e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_31 PF13847.1 gi|330508056|ref|YP_004384484.1| - 5.9e-24 84.3 0.0 2.1e-23 82.5 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330508056|ref|YP_004384484.1| - 3.9e-23 81.7 0.0 6.8e-23 80.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330508056|ref|YP_004384484.1| - 6.6e-19 68.1 0.0 9.6e-19 67.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330508056|ref|YP_004384484.1| - 4.1e-15 56.3 0.0 7.3e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330508056|ref|YP_004384484.1| - 1e-14 54.2 0.0 1.6e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|330508056|ref|YP_004384484.1| - 8.8e-13 48.3 0.1 7e-12 45.4 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330508056|ref|YP_004384484.1| - 2.2e-12 47.2 0.0 4e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330508056|ref|YP_004384484.1| - 1.7e-11 44.4 0.0 2.9e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330508056|ref|YP_004384484.1| - 8e-08 31.8 0.0 1.5e-07 30.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|330508056|ref|YP_004384484.1| - 2.9e-06 26.9 0.0 7.1e-06 25.6 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|330508056|ref|YP_004384484.1| - 2e-05 24.0 0.0 3.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|330508056|ref|YP_004384484.1| - 2.4e-05 24.0 0.0 3.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330508056|ref|YP_004384484.1| - 3.5e-05 23.0 0.0 7.2e-05 22.0 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|330508056|ref|YP_004384484.1| - 0.00025 20.2 0.0 0.00036 19.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|330508056|ref|YP_004384484.1| - 0.00067 18.7 0.0 0.013 14.5 0.0 2.0 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase NodS PF05401.6 gi|330508056|ref|YP_004384484.1| - 0.0008 18.8 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) UPF0020 PF01170.13 gi|330508056|ref|YP_004384484.1| - 0.00085 18.9 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 GidB PF02527.10 gi|330508056|ref|YP_004384484.1| - 0.0019 17.3 0.0 0.0047 16.0 0.0 1.6 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.15 gi|330508056|ref|YP_004384484.1| - 0.0035 16.4 0.0 0.0046 16.0 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.6 gi|330508056|ref|YP_004384484.1| - 0.013 14.9 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_9 PF08003.6 gi|330508056|ref|YP_004384484.1| - 0.022 13.4 0.1 0.032 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Peripla_BP_2 PF01497.13 gi|330508057|ref|YP_004384485.1| - 9.8e-19 67.4 0.0 1.7e-18 66.6 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_11 PF08241.7 gi|330508058|ref|YP_004384486.1| - 2.3e-25 88.9 0.0 3.9e-25 88.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330508058|ref|YP_004384486.1| - 3.6e-18 65.6 0.0 4.7e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330508058|ref|YP_004384486.1| - 3.6e-18 65.8 0.0 4.4e-18 65.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330508058|ref|YP_004384486.1| - 4.6e-15 56.1 0.0 6.9e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330508058|ref|YP_004384486.1| - 6.5e-15 54.8 0.0 8.7e-15 54.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|330508058|ref|YP_004384486.1| - 2e-11 44.2 0.0 2.8e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330508058|ref|YP_004384486.1| - 2.1e-11 44.0 0.0 4.2e-11 43.0 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330508058|ref|YP_004384486.1| - 2e-09 37.5 0.0 6e-09 35.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330508058|ref|YP_004384486.1| - 2e-05 24.0 0.0 6.6e-05 22.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|330508058|ref|YP_004384486.1| - 2.6e-05 23.6 0.0 4e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|330508058|ref|YP_004384486.1| - 0.00012 21.7 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|330508058|ref|YP_004384486.1| - 0.001 18.2 0.0 0.0015 17.6 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|330508058|ref|YP_004384486.1| - 0.0015 17.6 0.0 0.0024 16.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|330508058|ref|YP_004384486.1| - 0.0085 15.2 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.6 gi|330508058|ref|YP_004384486.1| - 0.014 14.8 0.0 0.018 14.4 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_9 PF08003.6 gi|330508058|ref|YP_004384486.1| - 0.036 12.7 0.0 0.055 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|330508058|ref|YP_004384486.1| - 0.039 13.6 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.10 gi|330508058|ref|YP_004384486.1| - 0.084 12.4 0.0 0.16 11.5 0.0 1.6 2 0 0 2 2 1 0 Hypothetical methyltransferase DREV PF05219.7 gi|330508058|ref|YP_004384486.1| - 0.092 11.6 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase MFS_1 PF07690.11 gi|330508059|ref|YP_004384487.1| - 1.5e-32 112.7 37.3 6.2e-32 110.6 21.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|330508059|ref|YP_004384487.1| - 3.2e-12 45.5 29.6 1.6e-10 39.9 9.5 2.4 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|330508059|ref|YP_004384487.1| - 6.9e-05 22.5 1.7 6.9e-05 22.5 1.2 3.1 3 0 0 3 3 3 1 MFS_1 like family LacY_symp PF01306.14 gi|330508059|ref|YP_004384487.1| - 0.00024 19.7 13.8 0.00024 19.7 9.6 2.2 2 0 0 2 2 2 1 LacY proton/sugar symporter UNC-93 PF05978.11 gi|330508059|ref|YP_004384487.1| - 0.0012 18.3 3.3 0.0012 18.3 2.3 2.7 2 1 0 2 2 2 1 Ion channel regulatory protein UNC-93 ATG22 PF11700.3 gi|330508059|ref|YP_004384487.1| - 0.0097 14.4 23.0 0.35 9.2 15.9 2.7 1 1 0 1 1 1 1 Vacuole effluxer Atg22 like DUF4161 PF13722.1 gi|330508059|ref|YP_004384487.1| - 0.089 13.1 0.4 0.089 13.1 0.2 3.1 2 1 1 3 3 3 0 C-terminal domain on CstA (DUF4161) SBP_bac_5 PF00496.17 gi|330508060|ref|YP_004384488.1| - 3e-93 312.6 0.1 4.2e-93 312.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle NUC130_3NT PF08158.7 gi|330508060|ref|YP_004384488.1| - 0.14 12.5 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 NUC130/3NT domain BPD_transp_1 PF00528.17 gi|330508061|ref|YP_004384489.1| - 5.9e-45 153.0 10.0 5.9e-45 153.0 6.9 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component FtsX PF02687.16 gi|330508061|ref|YP_004384489.1| - 2.9 7.6 19.7 1.2 8.8 5.3 3.1 3 0 0 3 3 3 0 FtsX-like permease family BPD_transp_1 PF00528.17 gi|330508062|ref|YP_004384490.1| - 8.9e-32 110.1 3.4 8.9e-32 110.1 2.3 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|330508062|ref|YP_004384490.1| - 5.2e-05 22.5 0.2 5.2e-05 22.5 0.2 2.6 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C Beta_helix PF13229.1 gi|330508063|ref|YP_004384491.1| - 4.1e-11 42.8 56.4 4.3e-05 23.3 17.0 3.5 1 1 2 3 3 3 3 Right handed beta helix region Chlam_PMP PF02415.12 gi|330508063|ref|YP_004384491.1| - 2.6e-05 24.1 45.3 0.28 11.5 0.0 10.0 11 0 0 11 11 11 6 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Peripla_BP_2 PF01497.13 gi|330508064|ref|YP_004384492.1| - 1.9e-15 56.6 0.2 2.6e-15 56.2 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein UBN2 PF14223.1 gi|330508064|ref|YP_004384492.1| - 0.1 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type DUF772 PF05598.6 gi|330508065|ref|YP_004384493.1| - 4.3e-20 71.3 0.0 8.1e-20 70.5 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|330508065|ref|YP_004384493.1| - 2.7e-11 43.4 6.5 4.8e-10 39.3 4.5 2.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|330508065|ref|YP_004384493.1| - 1.5e-05 24.9 0.5 2.6e-05 24.2 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330508065|ref|YP_004384493.1| - 2.2e-05 24.1 0.2 6.3e-05 22.6 0.1 1.8 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_2 PF13586.1 gi|330508065|ref|YP_004384493.1| - 0.015 15.4 2.0 0.02 15.0 0.1 2.0 2 0 0 2 2 2 0 Transposase DDE domain RNA_bind_2 PF10133.4 gi|330508067|ref|YP_004384495.1| - 5.8e-09 35.8 0.3 6.5e-09 35.6 0.2 1.0 1 0 0 1 1 1 1 Predicted RNA-binding protein DUF3197 PF11432.3 gi|330508067|ref|YP_004384495.1| - 0.12 12.3 0.0 0.13 12.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3197) CbiA PF01656.18 gi|330508068|ref|YP_004384496.1| - 2.6e-27 95.5 0.0 3.7e-27 95.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|330508068|ref|YP_004384496.1| - 5.6e-13 48.5 0.0 5.9e-12 45.2 0.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|330508068|ref|YP_004384496.1| - 4.3e-09 35.9 0.1 4.8e-08 32.5 0.0 2.1 1 1 1 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|330508068|ref|YP_004384496.1| - 2e-07 31.0 0.0 1.9e-06 27.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|330508068|ref|YP_004384496.1| - 3.1e-06 26.7 0.0 9.1e-05 21.9 0.0 2.0 2 0 0 2 2 2 1 YhjQ protein MobB PF03205.9 gi|330508068|ref|YP_004384496.1| - 2.1e-05 24.2 0.0 4.4e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|330508068|ref|YP_004384496.1| - 2.7e-05 23.0 0.1 5.8e-05 21.9 0.0 1.6 2 0 0 2 2 2 1 ArgK protein AAA_16 PF13191.1 gi|330508068|ref|YP_004384496.1| - 3.1e-05 24.0 0.0 5.4e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.17 gi|330508068|ref|YP_004384496.1| - 0.00014 21.3 0.0 0.00025 20.5 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|330508068|ref|YP_004384496.1| - 0.00042 20.0 0.0 0.00067 19.4 0.0 1.3 1 0 0 1 1 1 1 NTPase AAA_17 PF13207.1 gi|330508068|ref|YP_004384496.1| - 0.00057 20.6 0.4 0.0014 19.4 0.1 1.8 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|330508068|ref|YP_004384496.1| - 0.001 19.3 0.0 0.0022 18.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|330508068|ref|YP_004384496.1| - 0.0025 17.3 0.1 0.0037 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain ATP_bind_1 PF03029.12 gi|330508068|ref|YP_004384496.1| - 0.0036 16.8 0.0 0.0092 15.5 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.1 gi|330508068|ref|YP_004384496.1| - 0.0076 15.8 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|330508068|ref|YP_004384496.1| - 0.0077 15.7 0.6 0.041 13.3 0.0 2.2 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MipZ PF09140.6 gi|330508068|ref|YP_004384496.1| - 0.01 14.9 0.0 0.03 13.3 0.0 1.7 2 0 0 2 2 2 0 ATPase MipZ CTP_synth_N PF06418.9 gi|330508068|ref|YP_004384496.1| - 0.012 14.7 0.1 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 CTP synthase N-terminus AAA_22 PF13401.1 gi|330508068|ref|YP_004384496.1| - 0.013 15.6 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain VirC1 PF07015.6 gi|330508068|ref|YP_004384496.1| - 0.013 14.5 0.0 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein KTI12 PF08433.5 gi|330508068|ref|YP_004384496.1| - 0.014 14.6 0.0 0.026 13.7 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 APS_kinase PF01583.15 gi|330508068|ref|YP_004384496.1| - 0.016 14.8 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_28 PF13521.1 gi|330508068|ref|YP_004384496.1| - 0.018 15.0 0.1 0.046 13.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain LpxK PF02606.9 gi|330508068|ref|YP_004384496.1| - 0.028 13.3 0.5 0.14 11.0 0.0 2.0 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase NACHT PF05729.7 gi|330508068|ref|YP_004384496.1| - 0.032 13.8 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|330508068|ref|YP_004384496.1| - 0.066 12.6 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|330508068|ref|YP_004384496.1| - 0.074 11.6 0.0 0.1 11.1 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|330508068|ref|YP_004384496.1| - 0.089 11.6 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Abhydrolase_5 PF12695.2 gi|330508068|ref|YP_004384496.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase family AAA_5 PF07728.9 gi|330508068|ref|YP_004384496.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|330508068|ref|YP_004384496.1| - 0.18 11.3 0.3 0.48 9.9 0.1 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF4198 PF10670.4 gi|330508069|ref|YP_004384497.1| - 1e-18 68.1 0.0 1.2e-18 67.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) MG1 PF11974.3 gi|330508069|ref|YP_004384497.1| - 0.013 16.0 0.0 0.027 15.0 0.0 1.5 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain Gate PF07670.9 gi|330508070|ref|YP_004384498.1| - 0.00087 19.1 23.7 0.0044 16.9 3.0 2.8 2 2 1 3 3 3 2 Nucleoside recognition Peripla_BP_2 PF01497.13 gi|330508071|ref|YP_004384499.1| - 4.7e-27 94.6 0.0 6.6e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|330508072|ref|YP_004384500.1| - 1.3e-27 96.5 0.0 8.5e-25 87.2 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein T2SS-T3SS_pil_N PF13629.1 gi|330508072|ref|YP_004384500.1| - 0.043 13.3 0.2 0.1 12.1 0.1 1.7 1 0 0 1 1 1 0 Pilus formation protein N terminal region DDE_Tnp_1 PF01609.16 gi|330508073|ref|YP_004384501.1| - 1.4e-21 76.9 0.0 1.9e-21 76.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|330508073|ref|YP_004384501.1| - 0.0053 15.8 0.2 0.0088 15.0 0.1 1.3 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|330508073|ref|YP_004384501.1| - 0.013 15.6 0.0 0.036 14.2 0.0 1.8 1 0 0 1 1 1 0 Transposase DDE domain DUF2881 PF11087.3 gi|330508073|ref|YP_004384501.1| - 0.028 13.8 0.3 0.35 10.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2881) DDE_3 PF13358.1 gi|330508074|ref|YP_004384502.1| - 3.7e-23 81.9 0.0 4.5e-23 81.6 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF815 PF05673.8 gi|330508074|ref|YP_004384502.1| - 0.014 14.3 0.1 0.019 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Unstab_antitox PF09720.5 gi|330508074|ref|YP_004384502.1| - 0.14 11.8 0.2 0.37 10.5 0.2 1.8 1 1 0 1 1 1 0 Putative addiction module component HTH_29 PF13551.1 gi|330508075|ref|YP_004384503.1| - 6.6e-27 93.8 0.1 1.2e-26 92.9 0.0 1.5 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|330508075|ref|YP_004384503.1| - 1.5e-12 48.0 0.1 1e-11 45.4 0.0 2.0 2 1 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|330508075|ref|YP_004384503.1| - 4.1e-08 32.6 0.5 3e-05 23.4 0.0 3.0 3 0 0 3 3 3 2 Homeodomain-like domain HTH_28 PF13518.1 gi|330508075|ref|YP_004384503.1| - 0.0088 16.0 0.3 0.17 11.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|330508075|ref|YP_004384503.1| - 0.038 13.7 0.3 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|330508075|ref|YP_004384503.1| - 0.15 12.1 0.9 0.8 9.8 0.1 2.2 2 0 0 2 2 2 0 Transposase Sigma70_r4 PF04545.11 gi|330508075|ref|YP_004384503.1| - 0.3 10.4 2.4 2.6 7.4 0.1 2.7 3 0 0 3 3 3 0 Sigma-70, region 4 DDE_Tnp_IS66 PF03050.9 gi|330508076|ref|YP_004384504.1| - 2.9e-07 29.9 0.0 3.8e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|330508077|ref|YP_004384505.1| - 0.00064 19.6 0.3 0.0011 18.8 0.2 1.5 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 UPF0547 PF10571.4 gi|330508077|ref|YP_004384505.1| - 0.39 10.4 3.3 0.77 9.5 2.3 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF2178 PF09946.4 gi|330508078|ref|YP_004384506.1| - 2.1e-22 78.9 7.9 2.4e-22 78.7 5.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) Coat_X PF07552.6 gi|330508078|ref|YP_004384506.1| - 0.025 14.3 0.2 0.025 14.3 0.1 1.9 2 0 0 2 2 2 0 Spore Coat Protein X and V domain Intg_mem_TP0381 PF09529.5 gi|330508078|ref|YP_004384506.1| - 0.052 12.7 0.5 0.067 12.4 0.4 1.2 1 0 0 1 1 1 0 Integral membrane protein (intg_mem_TP0381) ER_lumen_recept PF00810.13 gi|330508078|ref|YP_004384506.1| - 0.073 13.5 2.7 1.8 9.0 0.0 2.1 1 1 1 2 2 2 0 ER lumen protein retaining receptor Ycf66_N PF07444.6 gi|330508078|ref|YP_004384506.1| - 0.27 10.9 1.7 3.8 7.2 1.1 2.5 1 1 0 1 1 1 0 Ycf66 protein N-terminus 5TM-5TMR_LYT PF07694.7 gi|330508078|ref|YP_004384506.1| - 1.1 8.6 8.3 0.69 9.2 0.6 2.0 1 1 1 2 2 2 0 5TMR of 5TMR-LYT NicO PF03824.11 gi|330508078|ref|YP_004384506.1| - 4.3 6.5 7.0 0.79 8.9 2.3 1.6 2 0 0 2 2 2 0 High-affinity nickel-transport protein DUF1600 PF07667.6 gi|330508078|ref|YP_004384506.1| - 6 6.9 6.9 2 8.5 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1600) HTH_3 PF01381.17 gi|330508079|ref|YP_004384507.1| - 2.2e-17 62.6 0.1 2.5e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|330508079|ref|YP_004384507.1| - 2.3e-14 53.1 0.0 2.5e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|330508079|ref|YP_004384507.1| - 9.5e-08 32.1 0.0 1.1e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|330508079|ref|YP_004384507.1| - 1e-07 32.0 0.0 1.2e-07 31.8 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|330508079|ref|YP_004384507.1| - 0.00033 19.9 0.1 0.00059 19.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|330508079|ref|YP_004384507.1| - 0.001 18.4 0.1 0.029 13.8 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|330508079|ref|YP_004384507.1| - 0.0011 18.5 0.1 0.0019 17.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_37 PF13744.1 gi|330508079|ref|YP_004384507.1| - 0.0034 17.1 0.0 0.0047 16.7 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|330508079|ref|YP_004384507.1| - 0.0048 16.6 0.0 0.0084 15.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|330508079|ref|YP_004384507.1| - 0.0055 16.3 0.1 0.0098 15.5 0.1 1.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|330508079|ref|YP_004384507.1| - 0.0063 15.8 0.0 0.0092 15.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_25 PF13413.1 gi|330508079|ref|YP_004384507.1| - 0.008 15.7 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain CENP-B_N PF04218.8 gi|330508079|ref|YP_004384507.1| - 0.057 12.8 0.1 0.13 11.7 0.0 1.6 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain GntR PF00392.16 gi|330508079|ref|YP_004384507.1| - 0.068 12.6 0.0 0.13 11.7 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.1 gi|330508079|ref|YP_004384507.1| - 0.08 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.7 gi|330508079|ref|YP_004384507.1| - 0.086 12.4 0.1 0.4 10.3 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain MarR PF01047.17 gi|330508079|ref|YP_004384507.1| - 0.094 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.1 gi|330508079|ref|YP_004384507.1| - 0.099 12.2 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_CI_repr PF07022.8 gi|330508079|ref|YP_004384507.1| - 0.12 12.5 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_28 PF13518.1 gi|330508079|ref|YP_004384507.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|330508079|ref|YP_004384507.1| - 0.13 11.9 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.10 gi|330508079|ref|YP_004384507.1| - 0.16 11.8 0.3 1.2 9.0 0.1 2.3 3 0 0 3 3 2 0 Helix-turn-helix domain of resolvase Inhibitor_I42 PF09394.5 gi|330508080|ref|YP_004384508.1| - 4.6e-05 23.6 4.9 4.6 7.6 0.0 4.5 1 1 3 4 4 4 3 Chagasin family peptidase inhibitor I42 DUF1654 PF07867.6 gi|330508080|ref|YP_004384508.1| - 0.057 12.7 5.0 2.9 7.3 0.1 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF1654) DEDD_Tnp_IS110 PF01548.12 gi|330508081|ref|YP_004384509.1| - 2.3e-27 95.4 0.0 6.3e-27 94.0 0.0 1.7 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.11 gi|330508081|ref|YP_004384509.1| - 7.9e-25 86.7 0.0 1.4e-24 86.0 0.0 1.4 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family ERCC4 PF02732.10 gi|330508081|ref|YP_004384509.1| - 0.054 13.2 0.1 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 ERCC4 domain Beta_helix PF13229.1 gi|330508082|ref|YP_004384510.1| - 2.6e-21 76.0 54.4 5.2e-12 45.7 18.0 3.4 2 1 0 2 2 2 2 Right handed beta helix region NosD PF05048.8 gi|330508082|ref|YP_004384510.1| - 1.8e-14 53.5 51.1 4.6e-12 45.5 20.7 3.4 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Pentapeptide_4 PF13599.1 gi|330508082|ref|YP_004384510.1| - 0.0028 17.4 3.6 0.26 11.0 0.1 3.7 3 1 0 3 3 3 2 Pentapeptide repeats (9 copies) ZapA PF05164.8 gi|330508083|ref|YP_004384511.1| - 0.13 12.2 0.1 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Cell division protein ZapA DDE_5 PF13546.1 gi|330508084|ref|YP_004384512.1| - 6.8e-12 44.8 0.0 7.7e-12 44.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_2 PF04693.7 gi|330508084|ref|YP_004384512.1| - 5.2e-05 22.4 0.9 0.0042 16.1 0.6 2.1 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 Mlp PF03304.8 gi|330508084|ref|YP_004384512.1| - 0.98 9.4 7.6 1.9 8.5 5.1 1.6 1 1 0 1 1 1 0 Mlp lipoprotein family rve PF00665.21 gi|330508085|ref|YP_004384513.1| - 1.4e-22 80.0 0.0 2.4e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330508085|ref|YP_004384513.1| - 4.9e-05 22.7 0.0 0.00014 21.3 0.0 1.9 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.10 gi|330508085|ref|YP_004384513.1| - 0.00097 18.9 0.0 0.0031 17.3 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.1 gi|330508085|ref|YP_004384513.1| - 0.0033 16.9 0.1 0.011 15.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|330508085|ref|YP_004384513.1| - 0.023 14.3 0.1 0.071 12.7 0.1 1.8 1 0 0 1 1 1 0 HTH domain HTH_29 PF13551.1 gi|330508085|ref|YP_004384513.1| - 0.034 14.3 0.3 0.16 12.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix HTH_Mga PF08280.6 gi|330508085|ref|YP_004384513.1| - 0.054 13.2 0.0 0.21 11.3 0.0 2.0 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.5 gi|330508085|ref|YP_004384513.1| - 0.1 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_3 PF01381.17 gi|330508085|ref|YP_004384513.1| - 0.13 12.1 0.0 0.36 10.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4_2 PF08281.7 gi|330508085|ref|YP_004384513.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 GcrA PF07750.6 gi|330508085|ref|YP_004384513.1| - 0.16 12.1 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 GcrA cell cycle regulator HTH_32 PF13565.1 gi|330508085|ref|YP_004384513.1| - 0.37 11.6 2.5 1 10.2 0.1 2.7 2 1 1 3 3 3 0 Homeodomain-like domain IstB_IS21 PF01695.12 gi|330508086|ref|YP_004384514.1| - 2.8e-67 225.5 0.0 3.9e-67 225.1 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.13 gi|330508086|ref|YP_004384514.1| - 1.9e-08 34.1 0.0 2.9e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.24 gi|330508086|ref|YP_004384514.1| - 6.1e-07 29.7 0.0 1.1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|330508086|ref|YP_004384514.1| - 8.5e-05 22.2 0.3 0.00023 20.8 0.0 1.8 2 0 0 2 2 1 1 Part of AAA domain PhoH PF02562.11 gi|330508086|ref|YP_004384514.1| - 0.00011 21.5 0.0 0.00018 20.8 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AFG1_ATPase PF03969.11 gi|330508086|ref|YP_004384514.1| - 0.00014 20.7 0.0 0.0002 20.2 0.0 1.2 1 0 0 1 1 1 1 AFG1-like ATPase AAA_22 PF13401.1 gi|330508086|ref|YP_004384514.1| - 0.00025 21.1 0.1 0.39 10.8 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|330508086|ref|YP_004384514.1| - 0.00038 20.3 0.0 0.00083 19.2 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|330508086|ref|YP_004384514.1| - 0.00068 19.6 0.0 0.0013 18.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|330508086|ref|YP_004384514.1| - 0.00071 18.6 0.0 0.0011 18.0 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|330508086|ref|YP_004384514.1| - 0.00075 20.3 0.2 0.0027 18.5 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|330508086|ref|YP_004384514.1| - 0.0021 17.4 0.3 0.022 14.1 0.2 2.1 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|330508086|ref|YP_004384514.1| - 0.0033 16.6 0.0 0.0066 15.6 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|330508086|ref|YP_004384514.1| - 0.0056 16.6 1.3 0.084 12.8 0.0 2.6 1 1 2 3 3 3 1 AAA ATPase domain AAA_30 PF13604.1 gi|330508086|ref|YP_004384514.1| - 0.014 15.0 0.0 0.15 11.6 0.0 2.1 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|330508086|ref|YP_004384514.1| - 0.02 13.6 0.0 0.041 12.6 0.0 1.5 1 0 0 1 1 1 0 ArgK protein AAA_5 PF07728.9 gi|330508086|ref|YP_004384514.1| - 0.022 14.4 0.2 0.08 12.6 0.2 2.0 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|330508086|ref|YP_004384514.1| - 0.026 14.0 0.0 0.054 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|330508086|ref|YP_004384514.1| - 0.027 13.8 0.1 0.058 12.7 0.1 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|330508086|ref|YP_004384514.1| - 0.036 13.9 0.0 0.082 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain TMEM191C PF15194.1 gi|330508086|ref|YP_004384514.1| - 0.039 13.8 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 TMEM191C family NTPase_1 PF03266.10 gi|330508086|ref|YP_004384514.1| - 0.048 13.3 0.4 7.2 6.2 0.0 2.4 1 1 0 2 2 2 0 NTPase DUF3605 PF12239.3 gi|330508086|ref|YP_004384514.1| - 0.049 13.4 0.1 0.086 12.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3605) AAA_10 PF12846.2 gi|330508086|ref|YP_004384514.1| - 0.066 12.6 0.3 0.21 10.9 0.0 2.0 2 1 0 2 2 2 0 AAA-like domain Arch_ATPase PF01637.13 gi|330508086|ref|YP_004384514.1| - 0.074 12.7 0.2 0.23 11.1 0.0 1.9 2 1 0 2 2 1 0 Archaeal ATPase DEAD PF00270.24 gi|330508086|ref|YP_004384514.1| - 0.078 12.4 0.0 2.2 7.7 0.0 2.2 1 1 1 2 2 2 0 DEAD/DEAH box helicase ResIII PF04851.10 gi|330508086|ref|YP_004384514.1| - 0.092 12.5 0.1 3.6 7.3 0.0 2.3 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit NACHT PF05729.7 gi|330508086|ref|YP_004384514.1| - 0.11 12.1 0.4 0.87 9.2 0.0 2.3 2 1 0 2 2 2 0 NACHT domain Mg_chelatase PF01078.16 gi|330508086|ref|YP_004384514.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|330508086|ref|YP_004384514.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_11 PF13086.1 gi|330508086|ref|YP_004384514.1| - 0.16 11.4 0.1 2.4 7.6 0.0 2.1 1 1 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|330508086|ref|YP_004384514.1| - 0.2 11.9 3.1 0.84 9.9 1.3 2.5 2 1 0 2 2 1 0 AAA domain DDE_Tnp_1 PF01609.16 gi|330508087|ref|YP_004384515.1| - 5.9e-08 32.5 1.2 6.9e-08 32.2 0.9 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|330508087|ref|YP_004384515.1| - 1.1e-05 24.6 1.0 1.4e-05 24.2 0.7 1.1 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 Colicin_M PF14859.1 gi|330508087|ref|YP_004384515.1| - 0.06 12.2 0.1 0.082 11.7 0.1 1.2 1 0 0 1 1 1 0 Colicin M DUF2064 PF09837.4 gi|330508088|ref|YP_004384516.1| - 0.005 16.4 12.6 7.4 6.2 0.0 6.1 6 0 0 6 6 6 3 Uncharacterized protein conserved in bacteria (DUF2064) Kelch_6 PF13964.1 gi|330508088|ref|YP_004384516.1| - 0.33 11.1 12.8 3.2 8.0 0.1 4.8 6 0 0 6 6 6 0 Kelch motif DUF2064 PF09837.4 gi|330508090|ref|YP_004384518.1| - 0.22 11.1 5.9 18 4.9 0.1 4.1 5 0 0 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2064) ZapA PF05164.8 gi|330508091|ref|YP_004384519.1| - 0.089 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Cell division protein ZapA DUF2064 PF09837.4 gi|330508092|ref|YP_004384520.1| - 0.13 11.8 7.7 25 4.5 0.0 5.0 6 0 0 6 6 6 0 Uncharacterized protein conserved in bacteria (DUF2064) CorC_HlyC PF03471.12 gi|330508092|ref|YP_004384520.1| - 0.24 11.2 1.1 3 7.6 0.0 3.2 3 1 1 4 4 4 0 Transporter associated domain PQQ_3 PF13570.1 gi|330508092|ref|YP_004384520.1| - 3.8 7.9 13.8 1.1 9.6 0.1 5.0 5 0 0 5 5 5 0 PQQ-like domain DUF2064 PF09837.4 gi|330508094|ref|YP_004384522.1| - 0.0011 18.6 12.6 6.9 6.3 0.0 6.1 6 1 1 7 7 7 4 Uncharacterized protein conserved in bacteria (DUF2064) Beta_helix PF13229.1 gi|330508095|ref|YP_004384523.1| - 3.3e-20 72.4 65.7 2.9e-10 40.1 23.8 4.6 1 1 2 4 4 4 4 Right handed beta helix region NosD PF05048.8 gi|330508095|ref|YP_004384523.1| - 4.6e-17 61.9 59.6 2.8e-16 59.3 22.1 3.1 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Pentapeptide_4 PF13599.1 gi|330508095|ref|YP_004384523.1| - 0.0019 17.9 7.2 0.0095 15.7 0.4 3.9 4 0 0 4 4 4 1 Pentapeptide repeats (9 copies) TrmB PF01978.14 gi|330508096|ref|YP_004384524.1| - 5.3e-09 35.6 0.1 8.1e-09 35.0 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|330508096|ref|YP_004384524.1| - 3.8e-08 32.9 0.0 6.4e-08 32.2 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|330508096|ref|YP_004384524.1| - 5.2e-08 32.3 0.0 1.1e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|330508096|ref|YP_004384524.1| - 5.2e-08 32.4 0.1 9.5e-08 31.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|330508096|ref|YP_004384524.1| - 6.8e-07 29.5 0.1 9.5e-07 29.0 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|330508096|ref|YP_004384524.1| - 2.3e-06 27.1 0.0 3.6e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|330508096|ref|YP_004384524.1| - 5.4e-06 26.0 0.1 6.9e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|330508096|ref|YP_004384524.1| - 8.7e-05 22.2 0.1 0.00011 21.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.12 gi|330508096|ref|YP_004384524.1| - 0.00069 19.2 0.1 0.00099 18.6 0.1 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.1 gi|330508096|ref|YP_004384524.1| - 0.00073 18.8 0.1 0.0016 17.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF1495 PF07381.6 gi|330508096|ref|YP_004384524.1| - 0.0011 18.5 0.1 0.0021 17.6 0.1 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_9 PF08221.6 gi|330508096|ref|YP_004384524.1| - 0.0021 17.8 0.1 0.0052 16.6 0.0 1.7 1 1 1 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain RP-C PF03428.8 gi|330508096|ref|YP_004384524.1| - 0.0024 17.3 0.0 0.0041 16.5 0.0 1.3 1 1 0 1 1 1 1 Replication protein C N-terminal domain HTH_35 PF13693.1 gi|330508096|ref|YP_004384524.1| - 0.0038 16.9 0.2 0.0086 15.8 0.0 1.7 2 1 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|330508096|ref|YP_004384524.1| - 0.01 15.8 0.1 0.015 15.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rio2_N PF09202.6 gi|330508096|ref|YP_004384524.1| - 0.016 15.2 0.0 0.022 14.8 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal FUR PF01475.14 gi|330508096|ref|YP_004384524.1| - 0.017 15.0 0.0 0.022 14.6 0.0 1.3 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_43 PF09904.4 gi|330508096|ref|YP_004384524.1| - 0.019 14.7 0.0 0.03 14.1 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix HTH_26 PF13443.1 gi|330508096|ref|YP_004384524.1| - 0.023 14.8 0.1 0.14 12.4 0.0 2.1 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain Sulfolobus_pRN PF05584.6 gi|330508096|ref|YP_004384524.1| - 0.026 14.5 0.1 0.034 14.1 0.1 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF2513 PF10711.4 gi|330508096|ref|YP_004384524.1| - 0.038 14.0 0.0 0.043 13.9 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Penicillinase_R PF03965.11 gi|330508096|ref|YP_004384524.1| - 0.041 13.9 0.3 0.058 13.4 0.2 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_40 PF14493.1 gi|330508096|ref|YP_004384524.1| - 0.048 13.8 0.0 0.056 13.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|330508096|ref|YP_004384524.1| - 0.048 13.7 0.1 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator MotA_activ PF09114.5 gi|330508096|ref|YP_004384524.1| - 0.056 13.2 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 Transcription factor MotA, activation domain DUF742 PF05331.6 gi|330508096|ref|YP_004384524.1| - 0.072 12.6 0.0 0.076 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_23 PF13384.1 gi|330508096|ref|YP_004384524.1| - 0.08 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.17 gi|330508096|ref|YP_004384524.1| - 0.086 12.5 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 MarR family PaaX PF07848.7 gi|330508096|ref|YP_004384524.1| - 0.1 12.6 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein DUF4364 PF14277.1 gi|330508096|ref|YP_004384524.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF2250 PF10007.4 gi|330508096|ref|YP_004384524.1| - 0.11 12.4 0.4 11 6.0 0.2 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1670 PF07900.6 gi|330508097|ref|YP_004384525.1| - 1.2e-26 93.3 0.1 1.3e-26 93.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) Sigma70_r4_2 PF08281.7 gi|330508097|ref|YP_004384525.1| - 0.0011 18.3 0.1 0.16 11.4 0.0 2.7 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|330508097|ref|YP_004384525.1| - 0.0029 17.2 0.0 13 5.6 0.0 3.1 2 1 1 3 3 3 2 Homeodomain-like domain HTH_29 PF13551.1 gi|330508097|ref|YP_004384525.1| - 0.0065 16.6 0.0 6 7.0 0.0 2.7 2 1 1 3 3 3 2 Winged helix-turn helix HTH_24 PF13412.1 gi|330508097|ref|YP_004384525.1| - 0.061 12.7 0.0 7.6 6.0 0.0 3.3 3 1 1 4 4 4 0 Winged helix-turn-helix DNA-binding DUF1670 PF07900.6 gi|330508098|ref|YP_004384526.1| - 1.1e-18 67.2 0.2 1.2e-18 67.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) ABC_tran PF00005.22 gi|330508099|ref|YP_004384527.1| - 2e-25 89.6 0.1 2.7e-25 89.2 0.1 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|330508099|ref|YP_004384527.1| - 4.1e-17 62.2 0.5 9.4e-17 61.1 0.3 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|330508099|ref|YP_004384527.1| - 6e-06 26.4 0.0 0.0001 22.4 0.0 2.0 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|330508099|ref|YP_004384527.1| - 7.7e-05 22.0 0.0 0.00013 21.3 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain ResIII PF04851.10 gi|330508099|ref|YP_004384527.1| - 0.002 17.9 0.0 0.0028 17.5 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit ATP-synt_ab PF00006.20 gi|330508099|ref|YP_004384527.1| - 0.019 14.4 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF2075 PF09848.4 gi|330508099|ref|YP_004384527.1| - 0.029 13.3 0.0 0.039 12.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Mg_chelatase PF01078.16 gi|330508099|ref|YP_004384527.1| - 0.036 13.2 0.0 0.31 10.1 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|330508099|ref|YP_004384527.1| - 0.062 12.7 0.0 0.079 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|330508100|ref|YP_004384528.1| - 4.4e-33 114.4 0.0 6.2e-33 113.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330508100|ref|YP_004384528.1| - 4.1e-09 36.8 0.1 1.3e-05 25.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330508100|ref|YP_004384528.1| - 1.4e-05 24.4 0.0 2.7e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|330508100|ref|YP_004384528.1| - 0.0016 18.7 0.0 0.0028 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330508100|ref|YP_004384528.1| - 0.0036 17.3 0.1 0.0046 16.9 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|330508100|ref|YP_004384528.1| - 0.011 15.4 0.1 0.026 14.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|330508100|ref|YP_004384528.1| - 0.033 13.3 0.0 0.055 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|330508100|ref|YP_004384528.1| - 0.036 14.2 0.4 0.088 12.9 0.3 1.8 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|330508100|ref|YP_004384528.1| - 0.037 13.6 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATP-synt_ab PF00006.20 gi|330508100|ref|YP_004384528.1| - 0.037 13.5 0.0 0.079 12.4 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.1 gi|330508100|ref|YP_004384528.1| - 0.053 12.5 0.1 0.96 8.4 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|330508100|ref|YP_004384528.1| - 0.062 13.4 0.0 0.13 12.5 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|330508100|ref|YP_004384528.1| - 0.069 12.2 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|330508100|ref|YP_004384528.1| - 0.094 13.5 0.0 0.14 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|330508100|ref|YP_004384528.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|330508100|ref|YP_004384528.1| - 0.17 11.4 0.1 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain CARDB PF07705.6 gi|330508101|ref|YP_004384529.1| - 0.0026 17.7 0.0 6.3 6.9 0.0 3.3 3 0 0 3 3 3 2 CARDB DUF11 PF01345.13 gi|330508101|ref|YP_004384529.1| - 0.0048 16.9 0.0 0.47 10.5 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|330508101|ref|YP_004384529.1| - 0.013 14.6 0.0 0.069 12.3 0.0 2.1 2 0 0 2 2 2 0 Translocon-associated protein beta (TRAPB) Cupredoxin_1 PF13473.1 gi|330508101|ref|YP_004384529.1| - 0.019 14.8 0.0 4.9 7.1 0.0 2.4 2 0 0 2 2 2 0 Cupredoxin-like domain Cupredoxin_1 PF13473.1 gi|330508102|ref|YP_004384530.1| - 0.0016 18.3 1.2 0.21 11.4 0.0 3.3 1 1 1 3 3 3 2 Cupredoxin-like domain DUF3040 PF11239.3 gi|330508103|ref|YP_004384531.1| - 0.022 14.7 1.8 4.2 7.4 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) UPF0104 PF03706.8 gi|330508103|ref|YP_004384531.1| - 0.043 13.0 1.3 0.051 12.8 0.9 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF1624 PF07786.7 gi|330508103|ref|YP_004384531.1| - 0.11 11.7 1.5 0.65 9.2 1.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1624) DUF3087 PF11286.3 gi|330508103|ref|YP_004384531.1| - 0.43 9.7 1.9 1 8.5 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3087) PUA PF01472.15 gi|330508104|ref|YP_004384532.1| - 2e-08 33.8 0.1 2.4e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 PUA domain Peripla_BP_2 PF01497.13 gi|330508105|ref|YP_004384533.1| - 1.6e-27 96.2 0.2 7.6e-27 93.9 0.1 1.8 1 1 0 1 1 1 1 Periplasmic binding protein T2SS-T3SS_pil_N PF13629.1 gi|330508105|ref|YP_004384533.1| - 0.081 12.4 0.1 0.17 11.3 0.1 1.6 1 0 0 1 1 1 0 Pilus formation protein N terminal region CobN-Mg_chel PF02514.11 gi|330508106|ref|YP_004384534.1| - 0 1177.0 0.0 0 1176.8 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase Peripla_BP_2 PF01497.13 gi|330508107|ref|YP_004384535.1| - 2.4e-08 33.3 0.0 3.2e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein MarR PF01047.17 gi|330508108|ref|YP_004384536.1| - 3.3e-09 36.3 0.1 6.4e-09 35.3 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|330508108|ref|YP_004384536.1| - 3.3e-06 26.3 0.0 4.8e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|330508108|ref|YP_004384536.1| - 6.3e-06 25.8 0.0 1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|330508108|ref|YP_004384536.1| - 1.3e-05 24.7 0.0 4e-05 23.1 0.0 1.7 1 1 1 2 2 2 1 MarR family EAP30 PF04157.11 gi|330508108|ref|YP_004384536.1| - 0.00034 19.8 0.0 0.00044 19.4 0.0 1.1 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_41 PF14502.1 gi|330508108|ref|YP_004384536.1| - 0.0005 19.6 0.0 0.00076 19.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PaaX PF07848.7 gi|330508108|ref|YP_004384536.1| - 0.0082 16.1 0.1 0.021 14.8 0.0 1.7 2 0 0 2 2 2 1 PaaX-like protein GntR PF00392.16 gi|330508108|ref|YP_004384536.1| - 0.0088 15.4 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|330508108|ref|YP_004384536.1| - 0.016 15.1 0.0 0.039 13.9 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|330508108|ref|YP_004384536.1| - 0.022 14.3 0.0 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|330508108|ref|YP_004384536.1| - 0.07 12.9 0.0 0.15 11.8 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|330508109|ref|YP_004384537.1| - 0.013 15.3 0.0 0.014 15.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix S10_plectin PF03501.10 gi|330508109|ref|YP_004384537.1| - 0.016 15.0 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 Plectin/S10 domain DUF4364 PF14277.1 gi|330508109|ref|YP_004384537.1| - 0.021 14.4 0.0 0.021 14.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TrmB PF01978.14 gi|330508109|ref|YP_004384537.1| - 0.029 14.0 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Replic_Relax PF13814.1 gi|330508109|ref|YP_004384537.1| - 0.066 13.0 0.0 0.068 13.0 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Cullin_Nedd8 PF10557.4 gi|330508109|ref|YP_004384537.1| - 0.13 12.0 0.0 0.26 11.1 0.0 1.5 2 0 0 2 2 2 0 Cullin protein neddylation domain VIT1 PF01988.14 gi|330508110|ref|YP_004384538.1| - 0.082 12.3 1.9 0.13 11.7 1.3 1.3 1 0 0 1 1 1 0 VIT family EAV_GS PF01309.13 gi|330508110|ref|YP_004384538.1| - 0.099 12.1 0.2 0.16 11.4 0.1 1.3 1 0 0 1 1 1 0 Equine arteritis virus small envelope glycoprotein zinc_ribbon_2 PF13240.1 gi|330508111|ref|YP_004384539.1| - 4.8e-08 32.2 4.2 7.8e-08 31.5 2.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|330508111|ref|YP_004384539.1| - 8.8e-06 24.7 2.4 1.4e-05 24.1 1.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|330508111|ref|YP_004384539.1| - 0.00026 20.7 1.1 0.00037 20.2 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon Cript PF10235.4 gi|330508111|ref|YP_004384539.1| - 0.21 11.9 1.9 0.36 11.2 1.3 1.4 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT Nudix_N_2 PF14803.1 gi|330508111|ref|YP_004384539.1| - 2.3 7.9 4.7 11 5.8 0.3 2.4 2 0 0 2 2 2 0 Nudix N-terminal DDE_Tnp_1 PF01609.16 gi|330508112|ref|YP_004384540.1| - 9.5e-23 80.8 0.0 1.4e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|330508112|ref|YP_004384540.1| - 0.0076 16.4 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|330508112|ref|YP_004384540.1| - 0.011 14.7 0.3 0.017 14.1 0.2 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DDE_Tnp_IS66 PF03050.9 gi|330508114|ref|YP_004384542.1| - 4.9e-55 186.6 0.0 5.9e-55 186.3 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|330508114|ref|YP_004384542.1| - 1.8e-06 27.7 2.9 4.5e-06 26.5 2.0 1.7 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.1 gi|330508114|ref|YP_004384542.1| - 0.0039 17.1 0.0 0.02 14.8 0.0 2.0 1 1 1 2 2 2 1 DDE domain DZR PF12773.2 gi|330508114|ref|YP_004384542.1| - 0.021 14.6 2.1 0.038 13.8 1.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon HEAT_EZ PF13513.1 gi|330508114|ref|YP_004384542.1| - 0.054 14.0 0.1 0.2 12.1 0.0 2.0 2 0 0 2 2 2 0 HEAT-like repeat Transposase_mut PF00872.13 gi|330508114|ref|YP_004384542.1| - 0.08 11.4 0.0 0.76 8.2 0.0 2.0 2 0 0 2 2 2 0 Transposase, Mutator family ATP-cone PF03477.11 gi|330508115|ref|YP_004384543.1| - 0.046 14.1 0.0 0.092 13.1 0.0 1.6 1 1 0 1 1 1 0 ATP cone domain ABC2_membrane PF01061.19 gi|330508117|ref|YP_004384545.1| - 6.3e-25 87.5 14.7 6.3e-25 87.5 10.2 2.0 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330508117|ref|YP_004384545.1| - 1.7e-06 27.3 25.3 1.7e-06 27.3 17.5 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|330508117|ref|YP_004384545.1| - 0.025 13.7 26.1 0.12 11.4 18.1 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein CcmB PF03379.8 gi|330508117|ref|YP_004384545.1| - 0.072 12.2 14.5 0.014 14.6 7.6 1.5 1 1 0 1 1 1 0 CcmB protein PAP2_C PF14360.1 gi|330508117|ref|YP_004384545.1| - 1.5 9.1 4.9 0.82 9.9 1.3 2.2 2 1 0 2 2 2 0 PAP2 superfamily C-terminal ABC_tran PF00005.22 gi|330508118|ref|YP_004384546.1| - 9.3e-35 119.9 0.0 1.3e-34 119.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330508118|ref|YP_004384546.1| - 3.6e-15 56.6 0.3 5.1e-13 49.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|330508118|ref|YP_004384546.1| - 0.00058 20.2 0.0 0.0008 19.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|330508118|ref|YP_004384546.1| - 0.0032 17.3 0.0 0.0063 16.4 0.0 1.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|330508118|ref|YP_004384546.1| - 0.0054 16.0 0.0 0.02 14.1 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|330508118|ref|YP_004384546.1| - 0.0088 16.0 0.3 0.016 15.1 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|330508118|ref|YP_004384546.1| - 0.015 14.7 0.4 2.8 7.3 0.0 2.2 1 1 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|330508118|ref|YP_004384546.1| - 0.027 14.6 0.1 0.11 12.7 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|330508118|ref|YP_004384546.1| - 0.029 13.8 0.1 0.053 13.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|330508118|ref|YP_004384546.1| - 0.034 12.9 0.0 0.053 12.2 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Rad17 PF03215.10 gi|330508118|ref|YP_004384546.1| - 0.069 11.8 0.0 0.089 11.4 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|330508118|ref|YP_004384546.1| - 0.078 12.8 0.8 0.48 10.2 0.5 2.1 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|330508118|ref|YP_004384546.1| - 0.086 12.0 0.1 0.35 10.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|330508118|ref|YP_004384546.1| - 0.09 12.2 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|330508118|ref|YP_004384546.1| - 0.14 12.1 0.0 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|330508118|ref|YP_004384546.1| - 0.18 11.9 0.7 1.1 9.3 0.5 2.2 1 1 0 1 1 1 0 AAA domain VWA_2 PF13519.1 gi|330508119|ref|YP_004384547.1| - 1.9e-20 73.6 0.0 5.7e-20 72.1 0.0 1.9 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|330508119|ref|YP_004384547.1| - 6.4e-13 48.7 0.0 1.4e-12 47.7 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|330508119|ref|YP_004384547.1| - 2.2e-10 40.3 0.0 1.5e-06 28.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|330508119|ref|YP_004384547.1| - 6.8e-08 31.9 0.1 5.4e-07 28.9 0.0 2.4 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|330508119|ref|YP_004384547.1| - 9.1e-06 24.6 4.6 0.00024 20.0 2.2 3.2 2 1 0 2 2 2 1 MCM2/3/5 family VWA_3 PF13768.1 gi|330508119|ref|YP_004384547.1| - 0.00064 19.4 0.0 0.0026 17.4 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain Mg_chelatase_2 PF13335.1 gi|330508119|ref|YP_004384547.1| - 0.0017 18.7 0.4 0.0057 17.0 0.3 2.0 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|330508119|ref|YP_004384547.1| - 0.0031 17.0 0.0 0.21 11.0 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_22 PF13401.1 gi|330508119|ref|YP_004384547.1| - 0.011 15.8 0.0 0.086 12.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|330508119|ref|YP_004384547.1| - 0.027 14.4 0.0 0.068 13.1 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain AAA_3 PF07726.6 gi|330508119|ref|YP_004384547.1| - 0.041 13.4 0.0 4.5 6.8 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) BAF1_ABF1 PF04684.8 gi|330508119|ref|YP_004384547.1| - 0.6 8.8 8.0 1.1 8.0 5.5 1.3 1 0 0 1 1 1 0 BAF1 / ABF1 chromatin reorganising factor Peptidase_S49_N PF08496.5 gi|330508119|ref|YP_004384547.1| - 0.8 9.4 6.3 5.5 6.7 2.8 2.4 2 0 0 2 2 2 0 Peptidase family S49 N-terminal RR_TM4-6 PF06459.7 gi|330508119|ref|YP_004384547.1| - 1.2 8.9 10.1 2.4 8.0 7.0 1.4 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 FecCD PF01032.13 gi|330508120|ref|YP_004384548.1| - 5.2e-96 321.1 35.0 6.5e-96 320.8 24.3 1.1 1 0 0 1 1 1 1 FecCD transport family BPD_transp_2 PF02653.11 gi|330508120|ref|YP_004384548.1| - 0.00059 18.8 27.5 0.00059 18.8 19.1 2.8 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component Methyltransf_11 PF08241.7 gi|330508122|ref|YP_004384550.1| - 2.2e-20 72.9 0.0 3.5e-20 72.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330508122|ref|YP_004384550.1| - 3.5e-18 65.6 0.0 8.1e-18 64.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330508122|ref|YP_004384550.1| - 1.2e-17 64.1 0.0 2e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330508122|ref|YP_004384550.1| - 5.5e-15 55.4 0.0 7.8e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330508122|ref|YP_004384550.1| - 4.9e-14 52.8 0.0 1.4e-13 51.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330508122|ref|YP_004384550.1| - 3.8e-13 49.7 0.0 6e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330508122|ref|YP_004384550.1| - 1.4e-12 47.2 0.0 1.9e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|330508122|ref|YP_004384550.1| - 3.9e-08 33.3 0.0 7.7e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|330508122|ref|YP_004384550.1| - 0.00015 20.9 0.0 0.00021 20.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|330508122|ref|YP_004384550.1| - 0.00079 18.2 0.0 0.0012 17.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) NodS PF05401.6 gi|330508122|ref|YP_004384550.1| - 0.0065 15.8 0.0 0.0096 15.3 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|330508122|ref|YP_004384550.1| - 0.0091 15.3 0.1 0.062 12.6 0.1 2.1 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW NNMT_PNMT_TEMT PF01234.12 gi|330508122|ref|YP_004384550.1| - 0.018 14.0 0.0 0.028 13.4 0.0 1.2 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family Methyltransf_8 PF05148.10 gi|330508122|ref|YP_004384550.1| - 0.079 12.5 0.0 0.24 11.0 0.0 1.8 2 0 0 2 2 2 0 Hypothetical methyltransferase MTS PF05175.9 gi|330508122|ref|YP_004384550.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain CheR PF01739.13 gi|330508122|ref|YP_004384550.1| - 0.12 11.6 0.0 3.5 6.8 0.0 2.1 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_29 PF03141.11 gi|330508122|ref|YP_004384550.1| - 0.13 10.5 0.0 0.23 9.7 0.0 1.3 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase HATPase_c PF02518.21 gi|330508123|ref|YP_004384551.1| - 3.2e-29 100.8 0.0 6.2e-29 99.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|330508123|ref|YP_004384551.1| - 4.9e-29 100.5 1.1 1.3e-28 99.2 0.8 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|330508123|ref|YP_004384551.1| - 2e-20 72.5 1.9 3.5e-20 71.7 0.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain ERM PF00769.14 gi|330508123|ref|YP_004384551.1| - 0.019 14.5 6.1 0.028 13.9 4.2 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family DUF745 PF05335.8 gi|330508123|ref|YP_004384551.1| - 0.21 11.0 6.9 0.34 10.4 4.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) CALCOCO1 PF07888.6 gi|330508123|ref|YP_004384551.1| - 0.31 9.2 6.0 0.46 8.7 4.2 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like PEP-utilisers_N PF05524.8 gi|330508123|ref|YP_004384551.1| - 0.34 10.6 6.1 0.7 9.6 4.2 1.4 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal CBM_48 PF02922.13 gi|330508124|ref|YP_004384552.1| - 0.8 9.7 10.2 0.53 10.3 0.8 3.5 2 2 2 4 4 4 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Big_3_4 PF13754.1 gi|330508124|ref|YP_004384552.1| - 1.4 9.3 10.3 3 8.2 0.3 3.4 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) ATP_bind_4 PF01902.12 gi|330508125|ref|YP_004384553.1| - 1.4e-50 171.7 0.0 1.6e-50 171.4 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region PLDc_2 PF13091.1 gi|330508127|ref|YP_004384555.1| - 6.1e-07 29.2 0.0 6.5e-05 22.6 0.0 2.5 2 0 0 2 2 2 2 PLD-like domain AA_kinase PF00696.23 gi|330508128|ref|YP_004384556.1| - 5.9e-25 88.2 0.0 6.7e-25 88.0 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family cobW PF02492.14 gi|330508129|ref|YP_004384557.1| - 0.00076 18.9 0.0 0.0039 16.6 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Thymidylate_kin PF02223.12 gi|330508129|ref|YP_004384557.1| - 0.0031 16.9 0.0 0.0053 16.1 0.0 1.4 1 0 0 1 1 1 1 Thymidylate kinase LpxK PF02606.9 gi|330508129|ref|YP_004384557.1| - 0.11 11.4 0.1 0.22 10.4 0.1 1.5 1 1 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase CMD PF02627.15 gi|330508130|ref|YP_004384558.1| - 1.9e-14 53.2 0.2 2.1e-14 53.1 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Molybdopterin PF00384.17 gi|330508131|ref|YP_004384559.1| - 3e-89 299.7 0.0 3.5e-89 299.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|330508131|ref|YP_004384559.1| - 8.2e-29 99.6 0.0 1.8e-28 98.5 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|330508131|ref|YP_004384559.1| - 9.8e-14 50.9 0.4 1.9e-13 50.0 0.3 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Mrr_cat PF04471.7 gi|330508132|ref|YP_004384560.1| - 8.1e-07 28.8 0.1 1.2e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Restriction endonuclease NERD PF08378.6 gi|330508132|ref|YP_004384560.1| - 0.00055 20.1 0.0 0.00072 19.7 0.0 1.3 1 0 0 1 1 1 1 Nuclease-related domain HGD-D PF06050.8 gi|330508132|ref|YP_004384560.1| - 0.044 12.6 0.1 0.061 12.1 0.1 1.1 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Hjc PF01870.13 gi|330508132|ref|YP_004384560.1| - 0.053 13.1 0.1 0.08 12.5 0.1 1.3 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) DERM PF14704.1 gi|330508132|ref|YP_004384560.1| - 0.096 12.6 0.2 0.23 11.4 0.1 1.6 1 1 1 2 2 2 0 Dermatopontin Stig1 PF04885.8 gi|330508133|ref|YP_004384561.1| - 2.6e-12 47.1 43.7 2e-05 24.7 16.2 2.9 1 1 2 3 3 3 2 Stigma-specific protein, Stig1 Fer4 PF00037.22 gi|330508133|ref|YP_004384561.1| - 8.1 6.2 25.5 0.16 11.6 5.2 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain DUF77 PF01910.12 gi|330508134|ref|YP_004384562.1| - 1.9e-25 88.3 0.1 2.2e-25 88.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Decorin_bind PF02352.10 gi|330508134|ref|YP_004384562.1| - 0.034 14.1 0.2 0.049 13.6 0.1 1.4 1 1 0 1 1 1 0 Decorin binding protein UPF0047 PF01894.12 gi|330508135|ref|YP_004384563.1| - 3.9e-32 110.5 0.0 4.7e-32 110.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 SNase PF00565.12 gi|330508136|ref|YP_004384564.1| - 2.2e-10 40.7 0.0 3e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue E1-E2_ATPase PF00122.15 gi|330508137|ref|YP_004384565.1| - 5e-55 186.0 3.1 5e-55 186.0 2.1 2.4 3 1 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|330508137|ref|YP_004384565.1| - 7.6e-21 75.5 0.1 2.1e-20 74.0 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|330508137|ref|YP_004384565.1| - 1.6e-12 47.3 14.3 1.6e-12 47.3 9.9 2.0 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus HAD PF12710.2 gi|330508137|ref|YP_004384565.1| - 5.6e-12 46.2 0.0 1.2e-11 45.1 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|330508137|ref|YP_004384565.1| - 1.4e-08 34.0 0.1 3.2e-08 32.9 0.1 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Dak1_2 PF13684.1 gi|330508137|ref|YP_004384565.1| - 0.056 12.3 0.0 0.11 11.3 0.0 1.5 1 0 0 1 1 1 0 Dihydroxyacetone kinase family Hydrolase_3 PF08282.7 gi|330508137|ref|YP_004384565.1| - 0.091 12.3 0.3 0.79 9.2 0.2 2.2 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase S-layer PF07752.6 gi|330508138|ref|YP_004384566.1| - 1.8e-137 456.7 23.1 1.5e-72 243.8 5.3 2.3 2 0 0 2 2 2 2 S-layer protein PEGA PF08308.6 gi|330508138|ref|YP_004384566.1| - 2.8e-12 46.2 3.4 6.3e-07 29.0 0.0 3.9 3 0 0 3 3 3 2 PEGA domain CarboxypepD_reg PF13620.1 gi|330508138|ref|YP_004384566.1| - 0.00013 21.9 20.4 0.00029 20.8 0.1 4.7 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain Transglut_C PF00927.17 gi|330508138|ref|YP_004384566.1| - 0.00055 19.9 0.2 0.0025 17.8 0.1 2.2 1 0 0 1 1 1 1 Transglutaminase family, C-terminal ig like domain A2M PF00207.17 gi|330508138|ref|YP_004384566.1| - 0.057 12.9 0.1 0.63 9.6 0.0 2.5 2 0 0 2 2 2 0 Alpha-2-macroglobulin family ABC_tran PF00005.22 gi|330508139|ref|YP_004384567.1| - 6.6e-34 117.1 0.0 1.1e-33 116.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330508139|ref|YP_004384567.1| - 6.8e-13 49.2 0.0 1.5e-07 31.6 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|330508139|ref|YP_004384567.1| - 9e-06 24.9 0.0 0.075 12.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF4162 PF13732.1 gi|330508139|ref|YP_004384567.1| - 1.2e-05 25.7 0.0 2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|330508139|ref|YP_004384567.1| - 1.4e-05 25.5 0.0 8.6e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|330508139|ref|YP_004384567.1| - 2.6e-05 23.6 0.1 5.1e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|330508139|ref|YP_004384567.1| - 0.0017 17.6 0.1 0.013 14.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain G-alpha PF00503.15 gi|330508139|ref|YP_004384567.1| - 0.012 14.2 0.0 0.014 14.1 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit DUF258 PF03193.11 gi|330508139|ref|YP_004384567.1| - 0.026 13.7 0.0 0.049 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|330508139|ref|YP_004384567.1| - 0.091 12.3 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC2_membrane PF01061.19 gi|330508140|ref|YP_004384568.1| - 4.4e-37 127.2 24.2 4.4e-37 127.2 16.8 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330508140|ref|YP_004384568.1| - 2.4e-17 63.0 32.0 2.4e-17 63.0 22.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|330508140|ref|YP_004384568.1| - 3.2e-07 29.7 30.9 5.1e-07 29.0 21.5 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|330508140|ref|YP_004384568.1| - 8.2e-07 28.1 19.2 1.1e-06 27.7 13.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein SNase PF00565.12 gi|330508141|ref|YP_004384569.1| - 0.033 14.4 0.0 0.064 13.5 0.0 1.4 1 0 0 1 1 1 0 Staphylococcal nuclease homologue AF1Q PF15017.1 gi|330508141|ref|YP_004384569.1| - 0.065 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Drug resistance and apoptosis regulator Exo_endo_phos PF03372.18 gi|330508142|ref|YP_004384570.1| - 4e-13 49.8 0.0 5.6e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family NUDIX PF00293.23 gi|330508143|ref|YP_004384571.1| - 1.2e-13 50.9 0.1 1.7e-13 50.3 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain DUF556 PF04476.8 gi|330508144|ref|YP_004384572.1| - 4.5e-98 327.1 1.7 5e-98 327.0 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) His_biosynth PF00977.16 gi|330508145|ref|YP_004384573.1| - 1.2e-24 86.9 0.0 1.5e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 Histidine biosynthesis protein OrfB_IS605 PF01385.14 gi|330508146|ref|YP_004384574.1| - 1.1e-39 136.2 0.0 1.8e-39 135.5 0.0 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330508146|ref|YP_004384574.1| - 2.2e-23 81.6 0.1 5.4e-23 80.4 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330508146|ref|YP_004384574.1| - 1.6e-08 33.7 0.7 5.8e-08 31.9 0.6 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain DZR PF12773.2 gi|330508146|ref|YP_004384574.1| - 0.015 15.0 0.3 0.028 14.2 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|330508146|ref|YP_004384574.1| - 0.048 13.4 0.5 0.15 11.8 0.4 1.8 1 0 0 1 1 1 0 Ribosomal protein L37e zf-ribbon_3 PF13248.1 gi|330508146|ref|YP_004384574.1| - 0.065 12.4 0.1 0.13 11.4 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|330508146|ref|YP_004384574.1| - 0.17 11.2 1.0 0.47 9.8 0.0 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding RecR PF02132.10 gi|330508146|ref|YP_004384574.1| - 3.8 7.0 5.6 13 5.3 0.3 2.8 2 1 1 3 3 3 0 RecR protein Transposase_20 PF02371.11 gi|330508147|ref|YP_004384575.1| - 1.1e-25 89.4 0.1 2.1e-25 88.6 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|330508147|ref|YP_004384575.1| - 1.1e-23 83.5 0.0 1.7e-23 82.8 0.0 1.4 1 0 0 1 1 1 1 Transposase Lectin_N PF03954.9 gi|330508147|ref|YP_004384575.1| - 0.1 11.9 0.0 1.3 8.4 0.0 2.2 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain AIRS_C PF02769.17 gi|330508149|ref|YP_004384577.1| - 2.7e-18 66.4 0.0 4.9e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|330508149|ref|YP_004384577.1| - 1.1e-16 60.8 0.1 1.9e-16 60.0 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF296 PF03479.10 gi|330508150|ref|YP_004384578.1| - 8e-24 83.5 0.2 9.9e-24 83.2 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) PolC_DP2 PF03833.8 gi|330508151|ref|YP_004384579.1| - 0 1129.9 0.0 0 1122.5 0.0 2.9 2 1 0 2 2 2 1 DNA polymerase II large subunit DP2 DUF2072 PF09845.4 gi|330508151|ref|YP_004384579.1| - 0.0017 18.3 0.2 0.0017 18.3 0.1 2.7 2 1 1 3 3 3 1 Zn-ribbon containing protein (DUF2072) zf-NADH-PPase PF09297.6 gi|330508151|ref|YP_004384579.1| - 0.023 14.1 12.5 5.8 6.5 0.2 5.0 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Nop10p PF04135.7 gi|330508151|ref|YP_004384579.1| - 0.88 9.3 6.9 9.6 6.0 0.2 2.9 2 1 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family HypA PF01155.14 gi|330508151|ref|YP_004384579.1| - 1.4 8.5 14.9 0.094 12.4 0.3 2.8 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|330508151|ref|YP_004384579.1| - 2.5 7.6 14.3 0.65 9.5 0.1 3.9 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger NTP_transf_2 PF01909.18 gi|330508152|ref|YP_004384580.1| - 0.0016 18.7 0.8 0.0023 18.2 0.6 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain SSV1_ORF_D-335 PF07935.6 gi|330508153|ref|YP_004384581.1| - 0.14 11.9 1.1 0.2 11.4 0.1 1.8 2 0 0 2 2 2 0 ORF D-335-like protein HTH_Tnp_1 PF01527.15 gi|330508154|ref|YP_004384582.1| - 9.6e-12 44.6 0.1 1.3e-11 44.2 0.1 1.4 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|330508154|ref|YP_004384582.1| - 0.00019 20.9 0.0 0.00041 19.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330508154|ref|YP_004384582.1| - 0.0016 18.3 0.0 0.0033 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|330508154|ref|YP_004384582.1| - 0.0021 18.1 0.1 0.0026 17.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|330508154|ref|YP_004384582.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain GnsAB PF08178.6 gi|330508154|ref|YP_004384582.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 GnsA/GnsB family rve PF00665.21 gi|330508155|ref|YP_004384583.1| - 1.4e-23 83.2 0.0 2.2e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330508155|ref|YP_004384583.1| - 1.6e-18 65.9 0.2 3.6e-18 64.8 0.2 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.1 gi|330508155|ref|YP_004384583.1| - 4.1e-17 61.9 0.3 1.5e-16 60.1 0.1 1.9 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.1 gi|330508155|ref|YP_004384583.1| - 3.9e-09 36.4 2.3 6.8e-09 35.6 1.1 1.8 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.1 gi|330508155|ref|YP_004384583.1| - 1.3e-06 28.4 0.4 2.1e-06 27.7 0.3 1.3 1 0 0 1 1 1 1 DDE domain HTH_Tnp_Tc3_2 PF01498.13 gi|330508155|ref|YP_004384583.1| - 0.14 12.2 0.4 0.44 10.6 0.0 1.9 2 0 0 2 2 2 0 Transposase DDE_Tnp_1 PF01609.16 gi|330508156|ref|YP_004384584.1| - 2.5e-18 66.4 0.2 3.2e-18 66.0 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330508156|ref|YP_004384584.1| - 0.0045 16.6 0.0 0.025 14.1 0.0 2.0 2 0 0 2 2 2 1 DDE superfamily endonuclease Transposase_20 PF02371.11 gi|330508157|ref|YP_004384585.1| - 6.2e-25 87.1 0.0 1.5e-24 85.9 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|330508157|ref|YP_004384585.1| - 0.0048 16.5 1.5 0.0085 15.7 0.3 2.0 2 0 0 2 2 2 1 Transposase YfkB PF08756.5 gi|330508157|ref|YP_004384585.1| - 0.02 14.4 0.0 0.052 13.1 0.0 1.7 1 0 0 1 1 1 0 YfkB-like domain DNA_pol_A PF00476.15 gi|330508158|ref|YP_004384586.1| - 4.4e-64 216.4 0.0 6.4e-64 215.9 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family A DNA_pol_A_exo1 PF01612.15 gi|330508158|ref|YP_004384586.1| - 0.0005 19.6 0.0 0.00099 18.6 0.0 1.5 1 0 0 1 1 1 1 3'-5' exonuclease DUF4258 PF14076.1 gi|330508159|ref|YP_004384587.1| - 2.2e-21 75.6 0.0 2.9e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) UPF0150 PF03681.10 gi|330508161|ref|YP_004384589.1| - 1.1e-09 37.7 0.1 1.5e-09 37.3 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Fis1_TPR_N PF14852.1 gi|330508162|ref|YP_004384590.1| - 0.037 13.3 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat UPF0150 PF03681.10 gi|330508163|ref|YP_004384591.1| - 1.2e-09 37.6 0.1 1.4e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Aminotran_1_2 PF00155.16 gi|330508164|ref|YP_004384592.1| - 2.9e-56 190.9 0.0 3.2e-56 190.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|330508164|ref|YP_004384592.1| - 2.2e-07 29.4 0.0 1.8e-06 26.5 0.0 1.9 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|330508164|ref|YP_004384592.1| - 1.7e-06 27.3 0.0 1.4e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|330508164|ref|YP_004384592.1| - 3.7e-06 25.9 0.0 5.5e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|330508164|ref|YP_004384592.1| - 6.8e-06 25.3 0.0 1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family GCS2 PF04107.8 gi|330508165|ref|YP_004384593.1| - 1.7e-39 135.6 0.0 2.2e-39 135.2 0.0 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) AdoMet_MTase PF07757.8 gi|330508165|ref|YP_004384593.1| - 0.015 15.4 0.0 0.11 12.6 0.0 2.1 1 1 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase CxxCxxCC PF03692.10 gi|330508166|ref|YP_004384594.1| - 3.9e-08 33.6 0.1 7.9e-08 32.6 0.1 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain RimK PF08443.6 gi|330508167|ref|YP_004384595.1| - 8.2e-17 61.2 0.0 1.8e-16 60.1 0.0 1.6 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|330508167|ref|YP_004384595.1| - 1.5e-11 44.3 0.0 2.5e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|330508167|ref|YP_004384595.1| - 2.5e-09 36.8 0.0 3.8e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|330508167|ref|YP_004384595.1| - 6.7e-08 32.5 0.0 1.1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain DUF4343 PF14243.1 gi|330508167|ref|YP_004384595.1| - 0.00013 21.8 0.0 0.00022 21.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4343) ATPgrasp_Ter PF15632.1 gi|330508167|ref|YP_004384595.1| - 0.00023 20.0 0.0 0.03 13.0 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon TTL PF03133.10 gi|330508167|ref|YP_004384595.1| - 0.0055 15.6 0.0 0.057 12.3 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family RLAN PF14401.1 gi|330508168|ref|YP_004384596.1| - 1.3e-27 96.2 0.1 1.6e-27 95.9 0.1 1.0 1 0 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain MAR_sialic_bdg PF10564.4 gi|330508168|ref|YP_004384596.1| - 0.027 14.2 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 Sialic-acid binding micronemal adhesive repeat Lipocalin PF00061.18 gi|330508168|ref|YP_004384596.1| - 0.12 12.4 0.4 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 Lipocalin / cytosolic fatty-acid binding protein family Thioredox_DsbH PF03190.10 gi|330508169|ref|YP_004384597.1| - 4.2e-76 254.1 0.0 7.4e-76 253.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|330508169|ref|YP_004384597.1| - 1.3e-12 47.5 0.0 2.3e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|330508169|ref|YP_004384597.1| - 1.3e-08 34.2 2.3 0.0032 16.5 0.0 3.0 2 1 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.8 gi|330508169|ref|YP_004384597.1| - 1.6e-06 27.4 0.5 0.03 13.3 0.0 2.4 2 0 0 2 2 2 2 Glycosyl Hydrolase Family 88 Prenyltrans_1 PF13243.1 gi|330508169|ref|YP_004384597.1| - 0.00013 21.9 0.3 0.29 11.1 0.0 2.5 2 0 0 2 2 2 2 Prenyltransferase-like Glyco_hydro_76 PF03663.9 gi|330508169|ref|YP_004384597.1| - 0.00089 18.7 0.8 0.53 9.6 0.1 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 Glyco_hydro_9 PF00759.14 gi|330508169|ref|YP_004384597.1| - 0.0012 17.8 0.2 0.072 11.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl hydrolase family 9 Thioredoxin_2 PF13098.1 gi|330508169|ref|YP_004384597.1| - 0.0016 18.5 0.0 0.0036 17.4 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain C5-epim_C PF06662.8 gi|330508169|ref|YP_004384597.1| - 0.0016 17.7 0.1 0.79 8.9 0.1 3.1 3 0 0 3 3 3 1 D-glucuronyl C5-epimerase C-terminus Prenyltrans_2 PF13249.1 gi|330508169|ref|YP_004384597.1| - 0.0055 17.0 0.0 0.49 10.8 0.0 2.8 2 0 0 2 2 2 1 Prenyltransferase-like DUF1680 PF07944.7 gi|330508169|ref|YP_004384597.1| - 0.038 12.2 0.4 2.1 6.5 0.0 2.1 2 0 0 2 2 2 0 Putative glycosyl hydrolase of unknown function (DUF1680) LANC_like PF05147.8 gi|330508169|ref|YP_004384597.1| - 0.056 11.9 0.0 0.17 10.3 0.0 1.8 2 0 0 2 2 2 0 Lanthionine synthetase C-like protein RE_LlaMI PF09562.5 gi|330508170|ref|YP_004384598.1| - 0.065 12.4 0.2 0.11 11.6 0.1 1.3 1 0 0 1 1 1 0 LlaMI restriction endonuclease Grp1_Fun34_YaaH PF01184.14 gi|330508171|ref|YP_004384599.1| - 9e-58 195.0 21.9 1e-57 194.8 15.2 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family UPF0047 PF01894.12 gi|330508172|ref|YP_004384600.1| - 5.2e-41 139.1 0.0 5.9e-41 138.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Aminotran_4 PF01063.14 gi|330508173|ref|YP_004384601.1| - 5.2e-49 166.7 0.0 6.2e-49 166.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV DMRL_synthase PF00885.14 gi|330508174|ref|YP_004384602.1| - 8.5e-35 119.5 0.3 9.8e-35 119.3 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.16 gi|330508175|ref|YP_004384603.1| - 1.1e-58 198.9 0.0 1.4e-58 198.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|330508175|ref|YP_004384603.1| - 1.1e-05 24.6 0.0 1.8e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|330508175|ref|YP_004384603.1| - 5.6e-05 21.6 0.0 9.2e-05 20.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|330508175|ref|YP_004384603.1| - 0.0085 15.2 0.0 0.017 14.2 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|330508175|ref|YP_004384603.1| - 0.01 14.6 0.0 0.016 13.9 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V ExoD PF06055.7 gi|330508176|ref|YP_004384604.1| - 0.0022 17.1 2.8 0.0022 17.1 1.9 2.4 2 1 1 3 3 3 1 Exopolysaccharide synthesis, ExoD DUF2069 PF09842.4 gi|330508176|ref|YP_004384604.1| - 0.024 14.5 4.9 0.047 13.6 2.8 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2069) PalH PF08733.5 gi|330508176|ref|YP_004384604.1| - 0.05 12.4 4.3 0.084 11.6 3.0 1.5 1 1 0 1 1 1 0 PalH/RIM21 Papilloma_E5A PF05776.7 gi|330508176|ref|YP_004384604.1| - 0.16 12.1 3.2 0.13 12.4 0.5 2.0 2 0 0 2 2 2 0 Papillomavirus E5A protein Lactamase_B_2 PF12706.2 gi|330508177|ref|YP_004384605.1| - 8.6e-22 77.6 0.5 1.1e-21 77.3 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|330508177|ref|YP_004384605.1| - 3.2e-17 62.8 0.4 4.2e-17 62.4 0.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|330508177|ref|YP_004384605.1| - 2.1e-05 24.3 0.2 3.6e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.24 gi|330508178|ref|YP_004384606.1| - 6.2e-35 120.2 0.0 1.3e-34 119.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|330508178|ref|YP_004384606.1| - 6e-06 26.4 1.2 0.0047 17.0 0.1 3.9 2 1 1 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|330508178|ref|YP_004384606.1| - 1.6e-05 25.7 0.3 0.00018 22.3 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|330508178|ref|YP_004384606.1| - 0.00059 19.5 0.0 0.0028 17.3 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|330508178|ref|YP_004384606.1| - 0.001 19.1 0.4 0.13 12.2 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|330508178|ref|YP_004384606.1| - 0.0011 18.9 0.0 0.0029 17.5 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF815 PF05673.8 gi|330508178|ref|YP_004384606.1| - 0.0032 16.4 0.0 0.033 13.1 0.0 2.3 2 1 1 3 3 3 1 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|330508178|ref|YP_004384606.1| - 0.0046 16.8 0.0 0.014 15.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|330508178|ref|YP_004384606.1| - 0.0071 16.6 0.0 0.021 15.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|330508178|ref|YP_004384606.1| - 0.0073 16.2 0.0 0.082 12.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_28 PF13521.1 gi|330508178|ref|YP_004384606.1| - 0.011 15.7 0.2 0.036 14.0 0.0 2.0 3 1 0 3 3 1 0 AAA domain AAA_25 PF13481.1 gi|330508178|ref|YP_004384606.1| - 0.013 14.8 0.4 0.93 8.8 0.1 3.0 2 1 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|330508178|ref|YP_004384606.1| - 0.014 15.1 0.2 0.051 13.3 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain Mg_chelatase PF01078.16 gi|330508178|ref|YP_004384606.1| - 0.021 13.9 0.0 0.048 12.8 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|330508178|ref|YP_004384606.1| - 0.082 12.3 0.1 0.15 11.4 0.0 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|330508178|ref|YP_004384606.1| - 0.11 12.0 0.1 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|330508178|ref|YP_004384606.1| - 0.12 11.9 0.0 0.16 11.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|330508178|ref|YP_004384606.1| - 0.52 10.6 4.0 2.9 8.1 0.1 2.9 2 1 0 2 2 2 0 AAA domain Transposase_20 PF02371.11 gi|330508179|ref|YP_004384607.1| - 1.2e-25 89.4 0.1 2.1e-25 88.6 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|330508179|ref|YP_004384607.1| - 1.8e-24 86.0 0.0 2.9e-24 85.3 0.0 1.3 1 0 0 1 1 1 1 Transposase Lectin_N PF03954.9 gi|330508179|ref|YP_004384607.1| - 0.028 13.8 0.0 0.35 10.2 0.0 2.2 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain SSF PF00474.12 gi|330508180|ref|YP_004384608.1| - 1.6e-58 198.3 38.9 2.1e-58 197.9 27.0 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2665 PF11654.3 gi|330508180|ref|YP_004384608.1| - 0.19 11.3 1.4 0.37 10.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2665) ETRAMP PF09716.5 gi|330508180|ref|YP_004384608.1| - 0.43 10.5 3.0 2.8 7.9 0.0 3.4 3 0 0 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) OrfB_IS605 PF01385.14 gi|330508181|ref|YP_004384609.1| - 7.7e-41 139.9 0.6 5.1e-40 137.2 0.0 1.9 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330508181|ref|YP_004384609.1| - 1.7e-23 82.0 0.1 3.4e-23 81.0 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330508181|ref|YP_004384609.1| - 9e-19 66.5 0.7 1.8e-18 65.5 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|330508181|ref|YP_004384609.1| - 0.02 14.7 0.2 0.033 14.0 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon OpuAC PF04069.7 gi|330508181|ref|YP_004384609.1| - 0.031 13.6 0.0 0.054 12.8 0.0 1.4 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system Sigma70_r1_2 PF00140.15 gi|330508181|ref|YP_004384609.1| - 0.22 11.2 1.4 7.5 6.3 0.3 2.7 2 0 0 2 2 2 0 Sigma-70 factor, region 1.2 RecR PF02132.10 gi|330508181|ref|YP_004384609.1| - 0.25 10.7 3.2 1.7 8.1 0.2 2.9 2 1 1 3 3 3 0 RecR protein Nitroreductase PF00881.19 gi|330508182|ref|YP_004384610.1| - 1.9e-07 31.0 0.1 0.022 14.6 0.0 3.4 2 2 1 3 3 3 2 Nitroreductase family TM1586_NiRdase PF14512.1 gi|330508182|ref|YP_004384610.1| - 0.06 12.5 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Putative TM nitroreductase DUF162 PF02589.10 gi|330508183|ref|YP_004384611.1| - 1.6e-29 102.7 0.0 2e-29 102.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 DUF308 PF03729.8 gi|330508184|ref|YP_004384612.1| - 1.1e-15 57.3 49.5 9.7e-10 38.3 11.7 3.2 2 1 1 3 3 3 3 Short repeat of unknown function (DUF308) zf-DHHC PF01529.15 gi|330508184|ref|YP_004384612.1| - 1.6 8.1 3.5 6.1 6.2 2.4 1.8 1 1 0 1 1 1 0 DHHC palmitoyltransferase MMR_HSR1_C PF08438.5 gi|330508185|ref|YP_004384613.1| - 3.3e-34 117.3 0.0 6e-34 116.5 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|330508185|ref|YP_004384613.1| - 1.2e-14 54.2 0.0 2.9e-14 53.0 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|330508185|ref|YP_004384613.1| - 2.1e-13 49.8 0.0 6.2e-13 48.3 0.0 1.8 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.13 gi|330508185|ref|YP_004384613.1| - 2.2e-08 33.5 0.1 1.2e-06 27.9 0.0 2.5 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|330508185|ref|YP_004384613.1| - 0.035 13.5 0.1 3.2 7.1 0.0 3.0 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain FrhB_FdhB_C PF04432.8 gi|330508186|ref|YP_004384614.1| - 6.5e-42 142.6 0.0 9.1e-42 142.1 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|330508186|ref|YP_004384614.1| - 3.8e-21 74.7 0.4 6e-21 74.0 0.3 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Hydantoinase_A PF01968.13 gi|330508187|ref|YP_004384615.1| - 5.8e-13 48.5 0.6 2.8e-05 23.3 0.0 2.9 3 1 0 3 3 3 2 Hydantoinase/oxoprolinase MutL PF13941.1 gi|330508187|ref|YP_004384615.1| - 0.00033 19.1 0.0 0.0088 14.4 0.1 2.2 2 0 0 2 2 2 2 MutL protein DUF436 PF04260.7 gi|330508187|ref|YP_004384615.1| - 0.094 12.2 0.1 0.17 11.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF436) DDE_Tnp_2 PF04693.7 gi|330508188|ref|YP_004384616.1| - 1.2e-12 47.4 6.5 4e-11 42.4 4.4 2.3 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_5 PF13546.1 gi|330508188|ref|YP_004384616.1| - 1.4e-12 47.0 0.0 4.3e-12 45.4 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|330508188|ref|YP_004384616.1| - 3.7e-09 36.4 2.6 7.3e-09 35.4 1.7 1.6 1 1 0 1 1 1 1 Transposase DDE domain Colicin_M PF14859.1 gi|330508188|ref|YP_004384616.1| - 0.1 11.4 0.3 0.17 10.7 0.2 1.3 1 0 0 1 1 1 0 Colicin M Flavodoxin_1 PF00258.20 gi|330508189|ref|YP_004384617.1| - 1.1e-12 48.2 0.0 1.3e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|330508189|ref|YP_004384617.1| - 1.7e-10 41.0 0.0 1.8e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|330508189|ref|YP_004384617.1| - 7.6e-06 25.4 0.0 1.1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|330508189|ref|YP_004384617.1| - 0.00025 20.5 0.3 0.011 15.2 0.2 2.1 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|330508189|ref|YP_004384617.1| - 0.0045 16.3 0.1 0.32 10.3 0.0 2.1 1 1 0 2 2 2 2 Flavodoxin PBP_like_2 PF12849.2 gi|330508190|ref|YP_004384618.1| - 5.3e-42 144.2 3.5 1e-41 143.3 2.4 1.3 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|330508190|ref|YP_004384618.1| - 5.4e-21 74.4 0.1 6.9e-21 74.0 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|330508190|ref|YP_004384618.1| - 3.7e-05 23.4 0.1 0.16 11.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|330508190|ref|YP_004384618.1| - 0.00071 19.3 0.6 0.0021 17.8 0.4 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DEAD_assoc PF08494.6 gi|330508192|ref|YP_004384620.1| - 2.6e-43 147.9 0.0 4.8e-43 147.0 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|330508192|ref|YP_004384620.1| - 1.4e-37 128.8 0.0 6.6e-36 123.3 0.0 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|330508192|ref|YP_004384620.1| - 2e-19 69.2 0.0 1.6e-17 63.1 0.0 2.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|330508192|ref|YP_004384620.1| - 0.00012 22.0 0.0 0.00053 19.8 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|330508192|ref|YP_004384620.1| - 0.00025 19.9 0.0 0.00055 18.8 0.0 1.5 2 0 0 2 2 2 1 SNF2 family N-terminal domain YdjO PF14169.1 gi|330508192|ref|YP_004384620.1| - 0.028 13.8 2.2 0.093 12.2 1.5 1.8 1 0 0 1 1 1 0 Cold-inducible protein YdjO DDE_Tnp_ISL3 PF01610.12 gi|330508193|ref|YP_004384621.1| - 5.3e-73 245.6 1.3 8.2e-73 245.0 0.9 1.3 1 0 0 1 1 1 1 Transposase zf-ISL3 PF14690.1 gi|330508193|ref|YP_004384621.1| - 2.4e-12 46.6 6.5 5e-12 45.6 4.5 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Tnp_ISL3 PF13542.1 gi|330508193|ref|YP_004384621.1| - 3.2e-11 42.2 0.1 6.1e-11 41.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 MULE PF10551.4 gi|330508193|ref|YP_004384621.1| - 0.0009 19.3 0.4 0.013 15.6 0.3 2.4 1 1 0 1 1 1 1 MULE transposase domain Acylphosphatase PF00708.13 gi|330508194|ref|YP_004384622.1| - 4.3e-19 68.3 0.0 9.2e-19 67.3 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.7 gi|330508194|ref|YP_004384622.1| - 0.0057 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1115) DUF2680 PF10925.3 gi|330508194|ref|YP_004384622.1| - 0.072 12.9 2.7 0.17 11.7 1.9 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) PPV_E1_C PF00519.12 gi|330508195|ref|YP_004384623.1| - 0.1 11.2 0.0 0.12 10.9 0.0 1.0 1 0 0 1 1 1 0 Papillomavirus helicase AMP-binding_C_2 PF14535.1 gi|330508196|ref|YP_004384624.1| - 8.6e-28 96.2 0.3 3.2e-27 94.3 0.3 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|330508196|ref|YP_004384624.1| - 1.7e-22 79.4 0.0 3.8e-22 78.2 0.0 1.5 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|330508196|ref|YP_004384624.1| - 0.00086 18.0 0.0 0.016 13.9 0.0 2.1 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE HTH_45 PF14947.1 gi|330508197|ref|YP_004384625.1| - 3e-23 81.4 0.3 3.5e-23 81.2 0.2 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.12 gi|330508197|ref|YP_004384625.1| - 0.01 15.4 0.0 0.011 15.3 0.0 1.3 1 1 0 1 1 1 0 HxlR-like helix-turn-helix DHO_dh PF01180.16 gi|330508198|ref|YP_004384626.1| - 2.6e-63 213.7 0.0 3e-63 213.5 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|330508198|ref|YP_004384626.1| - 2e-11 43.2 0.1 8e-06 24.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|330508198|ref|YP_004384626.1| - 1.1e-06 28.1 2.2 1.7e-06 27.4 1.5 1.4 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|330508198|ref|YP_004384626.1| - 0.00014 21.2 0.1 0.0003 20.1 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|330508198|ref|YP_004384626.1| - 0.00038 19.4 0.6 0.00062 18.7 0.4 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain PcrB PF01884.12 gi|330508198|ref|YP_004384626.1| - 0.0024 17.1 0.6 0.0074 15.5 0.1 1.8 2 0 0 2 2 2 1 PcrB family DUF561 PF04481.7 gi|330508198|ref|YP_004384626.1| - 0.0067 15.4 0.2 0.018 14.0 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF561) IGPS PF00218.16 gi|330508198|ref|YP_004384626.1| - 0.01 14.8 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|330508198|ref|YP_004384626.1| - 0.05 12.4 1.0 0.14 10.9 0.3 1.9 2 0 0 2 2 2 0 FMN-dependent dehydrogenase NanE PF04131.9 gi|330508198|ref|YP_004384626.1| - 0.13 11.1 0.4 0.32 9.9 0.2 1.7 1 1 1 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase NAD_binding_1 PF00175.16 gi|330508199|ref|YP_004384627.1| - 8.3e-11 42.4 0.0 1.2e-10 41.9 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|330508199|ref|YP_004384627.1| - 2.4e-10 39.7 2.5 4.8e-10 38.7 1.7 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|330508199|ref|YP_004384627.1| - 0.0018 18.3 0.0 0.0054 16.8 0.0 1.8 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer2_3 PF13085.1 gi|330508199|ref|YP_004384627.1| - 0.2 11.5 1.2 0.43 10.4 0.8 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FAA_hydrolase PF01557.13 gi|330508200|ref|YP_004384628.1| - 1.2e-68 230.8 0.0 1.4e-68 230.5 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Erythro_esteras PF05139.9 gi|330508201|ref|YP_004384629.1| - 2.1e-47 162.0 0.0 2.7e-47 161.6 0.0 1.1 1 0 0 1 1 1 1 Erythromycin esterase DUF399 PF04187.8 gi|330508201|ref|YP_004384629.1| - 0.048 13.1 0.0 0.47 9.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF399 Alk_phosphatase PF00245.15 gi|330508202|ref|YP_004384630.1| - 2.9e-103 345.7 2.9 2e-95 319.9 1.0 2.1 1 1 1 2 2 2 2 Alkaline phosphatase Metalloenzyme PF01676.13 gi|330508202|ref|YP_004384630.1| - 8.4e-08 31.9 1.2 1.5e-07 31.0 0.0 1.9 2 1 0 2 2 2 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|330508202|ref|YP_004384630.1| - 1.4e-05 24.5 0.3 0.001 18.3 0.2 2.8 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|330508202|ref|YP_004384630.1| - 0.0041 16.5 0.2 0.019 14.2 0.1 1.8 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase HTH_41 PF14502.1 gi|330508202|ref|YP_004384630.1| - 0.037 13.6 0.0 0.086 12.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TPR_1 PF00515.23 gi|330508203|ref|YP_004384631.1| - 2e-62 204.3 23.8 1.1e-10 40.6 0.2 7.9 7 1 1 8 8 8 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330508203|ref|YP_004384631.1| - 3.5e-57 189.9 19.9 1e-18 66.7 0.1 5.5 3 2 2 5 5 5 5 TPR repeat TPR_2 PF07719.12 gi|330508203|ref|YP_004384631.1| - 4.8e-52 169.7 18.0 2.5e-08 33.2 0.1 7.8 7 1 1 8 8 8 7 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330508203|ref|YP_004384631.1| - 1.5e-33 112.1 20.5 1.2e-05 25.0 0.0 9.3 9 0 0 9 9 9 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330508203|ref|YP_004384631.1| - 5.4e-33 110.2 16.9 4.1e-05 23.0 0.0 9.1 8 1 1 9 9 9 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330508203|ref|YP_004384631.1| - 1.8e-32 111.3 10.7 4.7e-09 36.6 0.2 5.4 3 1 0 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330508203|ref|YP_004384631.1| - 5.1e-27 93.6 13.2 9.6e-09 35.0 0.3 5.8 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330508203|ref|YP_004384631.1| - 2.6e-26 89.6 12.7 0.00078 19.8 0.1 8.3 3 2 5 8 8 7 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330508203|ref|YP_004384631.1| - 1.2e-21 76.8 19.7 1.1e-07 32.0 0.1 5.9 6 1 0 6 6 5 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330508203|ref|YP_004384631.1| - 2.5e-19 67.4 6.5 0.041 13.6 0.0 7.6 7 1 1 8 8 8 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330508203|ref|YP_004384631.1| - 9.7e-18 63.8 0.2 0.0014 18.4 0.0 5.3 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330508203|ref|YP_004384631.1| - 1.2e-16 59.9 7.3 0.18 12.3 0.0 7.9 7 1 0 7 7 7 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|330508203|ref|YP_004384631.1| - 7.3e-13 48.4 13.9 1.6e-05 24.9 3.7 4.4 2 2 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.13 gi|330508203|ref|YP_004384631.1| - 2.7e-10 39.9 18.2 0.061 13.2 0.0 6.4 6 1 0 6 6 6 3 MIT (microtubule interacting and transport) domain NARP1 PF12569.3 gi|330508203|ref|YP_004384631.1| - 1.3e-09 37.4 7.0 0.0073 15.1 0.0 5.0 1 1 3 5 5 5 4 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|330508203|ref|YP_004384631.1| - 3.2e-06 26.9 4.1 0.21 11.4 0.1 6.4 8 0 0 8 8 7 1 Fis1 C-terminal tetratricopeptide repeat TerY-C PF15616.1 gi|330508203|ref|YP_004384631.1| - 8.5e-06 25.7 0.3 0.02 14.8 0.1 2.5 2 0 0 2 2 2 2 TerY-C metal binding domain zinc_ribbon_2 PF13240.1 gi|330508203|ref|YP_004384631.1| - 9.3e-06 24.9 6.3 9.3e-06 24.9 4.4 2.6 3 0 0 3 3 2 1 zinc-ribbon domain TPR_3 PF07720.7 gi|330508203|ref|YP_004384631.1| - 2.8e-05 23.7 17.0 0.1 12.4 0.0 7.0 7 0 0 7 7 7 2 Tetratricopeptide repeat zf-ribbon_3 PF13248.1 gi|330508203|ref|YP_004384631.1| - 3.1e-05 23.0 3.9 3.1e-05 23.0 2.7 2.9 3 0 0 3 3 3 1 zinc-ribbon domain DUF3856 PF12968.2 gi|330508203|ref|YP_004384631.1| - 4.8e-05 23.2 4.1 4.2 7.1 0.2 5.6 3 2 2 5 5 5 0 Domain of Unknown Function (DUF3856) DZR PF12773.2 gi|330508203|ref|YP_004384631.1| - 0.00019 21.1 7.1 0.0011 18.7 0.7 2.6 2 1 0 2 2 2 1 Double zinc ribbon TPR_10 PF13374.1 gi|330508203|ref|YP_004384631.1| - 0.0002 21.1 12.7 1 9.3 0.0 6.6 8 0 0 8 8 6 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|330508203|ref|YP_004384631.1| - 0.001 18.2 2.2 3 6.8 0.1 4.0 2 1 2 5 5 5 2 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|330508203|ref|YP_004384631.1| - 0.0018 17.4 2.3 49 3.2 0.0 5.9 6 0 0 6 6 6 0 SHNi-TPR TPR_21 PF09976.4 gi|330508203|ref|YP_004384631.1| - 0.0023 17.8 18.9 0.65 9.9 2.1 5.1 4 2 1 5 5 5 2 Tetratricopeptide repeat Lambda_Kil PF06301.6 gi|330508203|ref|YP_004384631.1| - 0.0048 16.2 3.6 27 4.2 0.0 5.4 6 0 0 6 6 5 0 Bacteriophage lambda Kil protein TPR_4 PF07721.9 gi|330508203|ref|YP_004384631.1| - 0.0051 17.1 0.8 68 4.3 0.0 4.6 5 0 0 5 5 4 0 Tetratricopeptide repeat Nudix_N_2 PF14803.1 gi|330508203|ref|YP_004384631.1| - 0.055 13.1 0.1 0.055 13.1 0.1 2.8 3 0 0 3 3 2 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|330508203|ref|YP_004384631.1| - 0.1 12.1 0.1 0.1 12.1 0.1 2.6 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain BTAD PF03704.12 gi|330508203|ref|YP_004384631.1| - 0.15 12.4 0.1 34 4.7 0.0 2.8 2 1 0 2 2 2 0 Bacterial transcriptional activator domain TPR_20 PF14561.1 gi|330508203|ref|YP_004384631.1| - 0.46 10.6 12.3 5.4 7.2 0.1 4.5 4 1 1 5 5 4 0 Tetratricopeptide repeat PPTA PF01239.17 gi|330508203|ref|YP_004384631.1| - 0.54 9.6 9.5 0.7 9.3 0.1 4.4 4 0 0 4 4 3 0 Protein prenyltransferase alpha subunit repeat DnaJ_CXXCXGXG PF00684.14 gi|330508203|ref|YP_004384631.1| - 0.73 9.9 8.3 0.29 11.2 0.1 2.8 3 0 0 3 3 2 0 DnaJ central domain GFA PF04828.9 gi|330508203|ref|YP_004384631.1| - 1.2 9.0 6.9 4.9 7.1 0.7 3.6 2 2 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Apc5 PF12862.2 gi|330508203|ref|YP_004384631.1| - 1.3 8.9 7.3 20 5.0 0.1 4.9 3 2 2 5 5 5 0 Anaphase-promoting complex subunit 5 Lar_restr_allev PF14354.1 gi|330508203|ref|YP_004384631.1| - 1.6 9.1 6.4 5.2 7.4 0.1 3.2 2 1 0 2 2 2 0 Restriction alleviation protein Lar NMN_transporter PF04973.7 gi|330508204|ref|YP_004384632.1| - 0.0086 15.5 1.3 0.014 14.8 0.9 1.3 1 0 0 1 1 1 1 Nicotinamide mononucleotide transporter BPD_transp_1 PF00528.17 gi|330508204|ref|YP_004384632.1| - 0.24 10.9 5.1 0.25 10.8 3.6 1.0 1 0 0 1 1 1 0 Binding-protein-dependent transport system inner membrane component Cytochrom_B_C PF00032.12 gi|330508204|ref|YP_004384632.1| - 0.27 11.4 2.4 0.7 10.1 1.8 1.6 1 1 1 2 2 2 0 Cytochrome b(C-terminal)/b6/petD CDP-OH_P_transf PF01066.16 gi|330508204|ref|YP_004384632.1| - 0.28 11.5 3.5 0.43 10.9 2.4 1.5 1 1 0 1 1 1 0 CDP-alcohol phosphatidyltransferase DUF1206 PF06724.6 gi|330508204|ref|YP_004384632.1| - 0.35 10.6 0.1 0.35 10.6 0.1 2.5 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) DUF308 PF03729.8 gi|330508204|ref|YP_004384632.1| - 0.5 10.4 9.2 0.72 9.8 6.4 1.3 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF4190 PF13828.1 gi|330508204|ref|YP_004384632.1| - 0.52 9.8 7.9 0.34 10.4 0.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4190) HTH_Tnp_1 PF01527.15 gi|330508205|ref|YP_004384633.1| - 0.00028 20.7 0.0 0.00045 20.1 0.0 1.5 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|330508205|ref|YP_004384633.1| - 0.012 15.2 0.0 0.03 13.9 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain BBP1_C PF15272.1 gi|330508205|ref|YP_004384633.1| - 0.026 14.0 0.2 0.031 13.8 0.1 1.1 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal Herpes_BLRF2 PF05812.7 gi|330508205|ref|YP_004384633.1| - 0.043 13.6 0.2 0.059 13.1 0.1 1.2 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein YSIRK_signal PF04650.12 gi|330508207|ref|YP_004384635.1| - 1.4 8.5 4.8 2.9 7.5 3.3 1.5 1 0 0 1 1 1 0 YSIRK type signal peptide DUF123 PF01986.11 gi|330508208|ref|YP_004384636.1| - 1.7e-26 92.2 0.0 2.2e-26 91.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF11 PF01345.13 gi|330508209|ref|YP_004384637.1| - 1.1e-16 60.6 0.4 0.00059 19.8 0.0 5.7 5 0 0 5 5 5 4 Domain of unknown function DUF11 CARDB PF07705.6 gi|330508209|ref|YP_004384637.1| - 6.4e-13 48.6 1.1 0.61 10.1 0.0 6.9 7 0 0 7 7 7 5 CARDB CreD PF06123.7 gi|330508209|ref|YP_004384637.1| - 0.065 11.7 0.1 0.14 10.6 0.1 1.4 1 0 0 1 1 1 0 Inner membrane protein CreD Big_3_4 PF13754.1 gi|330508209|ref|YP_004384637.1| - 0.26 11.6 3.2 15 6.0 0.0 4.0 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) DUF3086 PF11285.3 gi|330508210|ref|YP_004384638.1| - 0.00088 18.1 1.0 0.00097 18.0 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3086) HAUS-augmin3 PF14932.1 gi|330508210|ref|YP_004384638.1| - 0.003 16.7 5.5 0.0033 16.6 3.8 1.2 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 DivIVA PF05103.8 gi|330508210|ref|YP_004384638.1| - 0.0085 16.1 7.6 0.011 15.8 5.3 1.1 1 0 0 1 1 1 1 DivIVA protein DUF3847 PF12958.2 gi|330508210|ref|YP_004384638.1| - 0.16 11.7 9.2 0.23 11.2 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3847) DUF4250 PF14056.1 gi|330508210|ref|YP_004384638.1| - 0.32 10.7 2.8 0.37 10.5 0.2 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4250) FlgN PF05130.7 gi|330508210|ref|YP_004384638.1| - 0.63 10.2 8.2 0.83 9.8 5.6 1.3 1 1 0 1 1 1 0 FlgN protein V_ATPase_I PF01496.14 gi|330508210|ref|YP_004384638.1| - 0.89 7.3 4.3 0.91 7.2 3.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF972 PF06156.8 gi|330508210|ref|YP_004384638.1| - 1.3 9.4 5.7 1.6 9.1 3.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF972) APG6 PF04111.7 gi|330508210|ref|YP_004384638.1| - 4.3 6.2 9.9 5.1 6.0 6.8 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 SNO PF01174.14 gi|330508211|ref|YP_004384639.1| - 2.6e-53 180.4 0.0 2.9e-53 180.3 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|330508211|ref|YP_004384639.1| - 9.5e-10 38.2 0.0 1.3e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|330508211|ref|YP_004384639.1| - 5.1e-05 23.0 0.0 6.3e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|330508211|ref|YP_004384639.1| - 0.0016 17.9 0.0 0.0032 16.9 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|330508211|ref|YP_004384639.1| - 0.03 13.7 0.0 0.093 12.1 0.0 1.7 2 0 0 2 2 2 0 DJ-1/PfpI family Peptidase_C26 PF07722.8 gi|330508211|ref|YP_004384639.1| - 0.071 12.5 0.2 0.46 9.8 0.0 2.4 2 1 0 2 2 2 0 Peptidase C26 SOR_SNZ PF01680.12 gi|330508212|ref|YP_004384640.1| - 2e-104 347.7 8.0 3.3e-104 347.0 5.6 1.3 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|330508212|ref|YP_004384640.1| - 1.8e-11 43.6 6.5 6.6e-08 31.9 0.6 2.5 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|330508212|ref|YP_004384640.1| - 3.5e-05 22.8 2.2 0.0038 16.2 0.0 2.8 2 1 1 3 3 3 2 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.12 gi|330508212|ref|YP_004384640.1| - 4.8e-05 22.3 0.7 0.029 13.1 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|330508212|ref|YP_004384640.1| - 0.00071 18.7 0.1 0.002 17.2 0.0 1.7 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|330508212|ref|YP_004384640.1| - 0.0013 17.9 0.5 0.0013 17.9 0.3 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|330508212|ref|YP_004384640.1| - 0.0037 16.5 0.3 0.015 14.5 0.0 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|330508212|ref|YP_004384640.1| - 0.019 14.2 0.5 0.048 12.9 0.0 1.8 2 0 0 2 2 2 0 PcrB family DUF561 PF04481.7 gi|330508212|ref|YP_004384640.1| - 0.038 12.9 0.1 0.27 10.1 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF561) TMP-TENI PF02581.12 gi|330508212|ref|YP_004384640.1| - 0.073 12.1 1.5 0.57 9.2 0.1 2.3 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI DPPIV_N PF00930.16 gi|330508213|ref|YP_004384641.1| - 1.4e-09 37.0 13.4 0.18 10.3 0.0 8.6 4 2 3 8 8 8 6 Dipeptidyl peptidase IV (DPP IV) N-terminal region Kelch_4 PF13418.1 gi|330508213|ref|YP_004384641.1| - 0.00014 21.5 3.0 55 3.6 0.0 7.8 8 0 0 8 8 8 0 Galactose oxidase, central domain APS-reductase_C PF12139.3 gi|330508213|ref|YP_004384641.1| - 0.055 13.6 2.1 0.45 10.6 0.0 3.7 4 0 0 4 4 4 0 Adenosine-5'-phosphosulfate reductase beta subunit DUF2606 PF10794.4 gi|330508213|ref|YP_004384641.1| - 0.89 8.9 15.1 35 3.8 0.0 7.5 7 3 1 8 8 8 0 Protein of unknown function (DUF2606) Pentapeptide_3 PF13576.1 gi|330508214|ref|YP_004384642.1| - 1.2e-12 47.4 9.6 2.1e-06 27.4 4.5 3.5 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) DUF4131 PF13567.1 gi|330508214|ref|YP_004384642.1| - 0.043 13.2 0.1 0.043 13.2 0.1 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) Ion_trans_2 PF07885.11 gi|330508214|ref|YP_004384642.1| - 0.44 10.3 11.8 0.65 9.7 5.0 3.2 2 1 1 3 3 3 0 Ion channel PGK PF00162.14 gi|330508215|ref|YP_004384643.1| - 1.3e-119 399.2 0.2 1.5e-119 399.0 0.2 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DHH PF01368.15 gi|330508216|ref|YP_004384644.1| - 1e-14 54.3 0.0 2.4e-14 53.2 0.0 1.6 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|330508216|ref|YP_004384644.1| - 6.2e-08 32.2 3.8 6.5e-08 32.1 1.2 2.1 2 0 0 2 2 2 1 DHHA1 domain Pribosyltran PF00156.22 gi|330508217|ref|YP_004384645.1| - 7.5e-24 83.8 0.0 1.1e-23 83.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|330508217|ref|YP_004384645.1| - 0.00018 20.7 0.0 0.00029 20.1 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|330508217|ref|YP_004384645.1| - 0.00048 19.4 0.0 0.0015 17.8 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase CHAT PF12770.2 gi|330508218|ref|YP_004384646.1| - 2.1e-06 27.1 0.0 4.3e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 CHAT domain Peptidase_C25 PF01364.13 gi|330508218|ref|YP_004384646.1| - 0.00073 18.6 0.0 0.0012 17.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family C25 DUF3180 PF11377.3 gi|330508219|ref|YP_004384647.1| - 0.017 14.9 6.7 0.019 14.8 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3180) Na_H_Exchanger PF00999.16 gi|330508219|ref|YP_004384647.1| - 0.093 11.2 4.7 0.12 10.8 3.3 1.2 1 0 0 1 1 1 0 Sodium/hydrogen exchanger family DUF3493 PF11998.3 gi|330508219|ref|YP_004384647.1| - 1.6 8.7 3.5 1.2 9.0 0.3 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3493) DUF3816 PF12822.2 gi|330508220|ref|YP_004384648.1| - 1.4 8.7 7.3 1.5 8.6 5.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) MFS_1 PF07690.11 gi|330508220|ref|YP_004384648.1| - 2.9 6.5 13.3 3.2 6.3 9.2 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily FA_desaturase PF00487.19 gi|330508220|ref|YP_004384648.1| - 4.8 6.5 9.4 5.8 6.2 6.5 1.3 1 1 0 1 1 1 0 Fatty acid desaturase DUF3784 PF12650.2 gi|330508222|ref|YP_004384650.1| - 0.11 12.4 2.4 0.2 11.6 1.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) Band_7 PF01145.20 gi|330508223|ref|YP_004384651.1| - 1.1e-27 97.1 1.3 1.5e-27 96.6 0.9 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family LCD1 PF09798.4 gi|330508223|ref|YP_004384651.1| - 0.028 12.4 1.0 0.044 11.7 0.7 1.2 1 0 0 1 1 1 0 DNA damage checkpoint protein Tfb2 PF03849.9 gi|330508223|ref|YP_004384651.1| - 0.031 12.9 1.0 0.046 12.3 0.7 1.2 1 0 0 1 1 1 0 Transcription factor Tfb2 Band_7_1 PF13421.1 gi|330508223|ref|YP_004384651.1| - 0.032 13.7 0.0 0.054 12.9 0.0 1.3 1 0 0 1 1 1 0 SPFH domain-Band 7 family IFT20 PF14931.1 gi|330508223|ref|YP_004384651.1| - 0.14 12.0 6.7 0.25 11.2 4.7 1.4 1 0 0 1 1 1 0 Intraflagellar transport complex B, subunit 20 DUF3395 PF11875.3 gi|330508223|ref|YP_004384651.1| - 0.6 9.7 5.1 2.5 7.7 3.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3395) Y1_Tnp PF01797.11 gi|330508224|ref|YP_004384652.1| - 7.9e-31 106.4 0.0 9.3e-31 106.2 0.0 1.1 1 0 0 1 1 1 1 Transposase IS200 like DUF772 PF05598.6 gi|330508225|ref|YP_004384653.1| - 6.3e-23 80.4 0.0 1.1e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|330508225|ref|YP_004384653.1| - 1.2e-15 57.5 0.5 2e-15 56.9 0.4 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330508225|ref|YP_004384653.1| - 3.5e-06 26.7 0.3 1.4e-05 24.7 0.0 1.9 2 0 0 2 2 2 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|330508225|ref|YP_004384653.1| - 2.3e-05 24.2 0.1 5.6e-05 22.9 0.1 1.6 1 1 0 1 1 1 1 Transposase DDE domain DUF3502 PF12010.3 gi|330508225|ref|YP_004384653.1| - 0.0068 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3502) DDE_Tnp_1_6 PF13751.1 gi|330508225|ref|YP_004384653.1| - 0.058 13.3 0.1 0.11 12.5 0.1 1.5 1 0 0 1 1 1 0 Transposase DDE domain CorA PF01544.13 gi|330508227|ref|YP_004384655.1| - 0.028 13.4 8.8 0.013 14.5 3.4 1.9 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein UCR_hinge PF02320.11 gi|330508227|ref|YP_004384655.1| - 0.031 14.2 4.3 0.047 13.6 0.4 2.5 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase hinge protein DivIVA PF05103.8 gi|330508227|ref|YP_004384655.1| - 0.031 14.3 3.2 0.031 14.3 2.2 3.2 1 1 2 3 3 3 0 DivIVA protein F_actin_bind PF08919.5 gi|330508227|ref|YP_004384655.1| - 0.035 13.8 4.2 2.1 8.0 0.1 2.2 2 0 0 2 2 2 0 F-actin binding DUF4200 PF13863.1 gi|330508227|ref|YP_004384655.1| - 0.035 14.0 26.6 0.037 13.9 4.5 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4200) Mnd1 PF03962.10 gi|330508227|ref|YP_004384655.1| - 0.042 13.5 20.5 0.35 10.5 5.0 2.1 1 1 1 2 2 2 0 Mnd1 family Laminin_II PF06009.7 gi|330508227|ref|YP_004384655.1| - 0.12 12.1 10.6 0.029 14.1 1.3 2.3 2 0 0 2 2 2 0 Laminin Domain II Syntaxin_2 PF14523.1 gi|330508227|ref|YP_004384655.1| - 0.15 12.0 13.5 0.043 13.8 2.0 2.7 1 1 1 2 2 2 0 Syntaxin-like protein TMPIT PF07851.8 gi|330508227|ref|YP_004384655.1| - 0.17 10.9 13.8 0.4 9.6 1.4 2.1 2 0 0 2 2 2 0 TMPIT-like protein NPV_P10 PF05531.7 gi|330508227|ref|YP_004384655.1| - 0.17 12.1 3.6 2.7 8.3 0.1 2.8 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein TBPIP PF07106.8 gi|330508227|ref|YP_004384655.1| - 0.2 11.1 19.4 0.23 11.0 5.1 2.6 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF2935 PF11155.3 gi|330508227|ref|YP_004384655.1| - 0.24 11.4 8.9 3.9 7.5 2.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF2935) ATG16 PF08614.6 gi|330508227|ref|YP_004384655.1| - 0.28 10.9 21.4 0.73 9.6 5.5 2.6 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) YkuI_C PF10388.4 gi|330508227|ref|YP_004384655.1| - 0.5 10.0 8.9 0.5 10.0 1.0 2.2 2 0 0 2 2 2 0 EAL-domain associated signalling protein domain Seryl_tRNA_N PF02403.17 gi|330508227|ref|YP_004384655.1| - 0.59 10.1 21.6 0.19 11.7 3.5 3.2 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF573 PF04504.9 gi|330508227|ref|YP_004384655.1| - 0.91 9.8 7.4 0.62 10.3 0.4 2.9 1 1 2 3 3 3 0 Protein of unknown function, DUF573 DUF148 PF02520.12 gi|330508227|ref|YP_004384655.1| - 1.7 8.4 15.1 1.5 8.6 1.4 2.9 1 1 2 3 3 3 0 Domain of unknown function DUF148 Synaptobrevin PF00957.16 gi|330508227|ref|YP_004384655.1| - 1.8 8.2 8.4 9.1 5.9 0.4 3.2 2 2 1 3 3 3 0 Synaptobrevin DUF948 PF06103.6 gi|330508227|ref|YP_004384655.1| - 2.1 8.2 5.2 17 5.3 0.2 2.8 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Syntaxin PF00804.20 gi|330508227|ref|YP_004384655.1| - 2.4 8.3 19.5 0.84 9.8 2.2 3.7 1 1 2 3 3 3 0 Syntaxin Prefoldin PF02996.12 gi|330508227|ref|YP_004384655.1| - 2.4 7.8 11.3 8.8 6.0 0.8 3.3 2 2 2 4 4 4 0 Prefoldin subunit FUSC PF04632.7 gi|330508227|ref|YP_004384655.1| - 2.5 6.4 9.0 21 3.3 6.2 1.9 1 1 0 1 1 1 0 Fusaric acid resistance protein family CCDC-167 PF15188.1 gi|330508227|ref|YP_004384655.1| - 2.9 7.9 13.9 0.69 9.8 3.1 3.4 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 DUF1664 PF07889.7 gi|330508227|ref|YP_004384655.1| - 4 7.2 8.8 2 8.2 0.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) SlyX PF04102.7 gi|330508227|ref|YP_004384655.1| - 4.4 7.7 9.0 0.77 10.1 0.1 3.7 1 1 2 3 3 3 0 SlyX HalX PF08663.5 gi|330508227|ref|YP_004384655.1| - 5.3 7.0 11.2 0.34 10.9 1.5 3.0 3 0 0 3 3 2 0 HalX domain DUF3810 PF12725.2 gi|330508227|ref|YP_004384655.1| - 6.5 5.5 8.4 2.8 6.7 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) APG6 PF04111.7 gi|330508227|ref|YP_004384655.1| - 7.5 5.4 25.8 2.1 7.3 4.4 2.1 1 1 1 2 2 2 0 Autophagy protein Apg6 Occludin_ELL PF07303.8 gi|330508227|ref|YP_004384655.1| - 8.1 7.2 13.3 7 7.4 1.9 2.7 1 1 1 2 2 2 0 Occludin homology domain Jnk-SapK_ap_N PF09744.4 gi|330508227|ref|YP_004384655.1| - 9.9 6.1 19.0 9.3 6.2 4.0 2.2 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 DUF98 PF01947.11 gi|330508228|ref|YP_004384656.1| - 4.3e-29 101.1 0.0 6.7e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF98) GHMP_kinases_C PF08544.8 gi|330508228|ref|YP_004384656.1| - 5.4e-06 26.5 0.0 2.1e-05 24.6 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal UTRA PF07702.8 gi|330508228|ref|YP_004384656.1| - 1e-05 25.1 0.0 2.6e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 UTRA domain GHMP_kinases_N PF00288.21 gi|330508228|ref|YP_004384656.1| - 0.012 15.7 0.0 0.029 14.4 0.0 1.7 1 0 0 1 1 1 0 GHMP kinases N terminal domain CitMHS PF03600.11 gi|330508229|ref|YP_004384657.1| - 3.7e-39 134.2 0.0 2.9e-37 128.0 0.0 1.6 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|330508229|ref|YP_004384657.1| - 1.6e-19 70.1 40.3 1.5e-16 60.3 12.0 2.8 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.16 gi|330508229|ref|YP_004384657.1| - 6.7e-16 57.6 0.0 2.1e-08 33.6 0.0 2.4 2 0 0 2 2 2 2 TrkA-C domain PAS_9 PF13426.1 gi|330508230|ref|YP_004384658.1| - 1.7e-44 150.4 0.0 3.6e-17 62.6 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|330508230|ref|YP_004384658.1| - 1.1e-42 144.5 0.0 3.4e-17 62.4 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|330508230|ref|YP_004384658.1| - 1.6e-39 134.1 0.1 9.9e-18 63.9 0.0 3.7 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.19 gi|330508230|ref|YP_004384658.1| - 2.6e-36 124.0 0.1 8e-26 90.2 0.0 2.8 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.21 gi|330508230|ref|YP_004384658.1| - 4.9e-30 103.4 0.0 1.1e-29 102.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|330508230|ref|YP_004384658.1| - 1e-20 73.4 2.1 2.8e-20 72.0 0.0 3.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|330508230|ref|YP_004384658.1| - 7.5e-18 63.6 0.2 4.8e-06 26.2 0.1 4.1 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|330508230|ref|YP_004384658.1| - 2.1e-12 46.9 0.1 1.6e-10 40.9 0.0 3.2 3 0 0 3 3 3 1 PAS fold PAS_10 PF13596.1 gi|330508230|ref|YP_004384658.1| - 1.8e-09 37.7 0.0 0.0098 16.1 0.0 4.2 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.2 gi|330508230|ref|YP_004384658.1| - 7.8e-08 32.3 0.1 0.0052 16.7 0.0 4.1 4 1 0 4 4 4 2 PAS fold HATPase_c_5 PF14501.1 gi|330508230|ref|YP_004384658.1| - 0.011 15.4 0.0 0.032 13.9 0.0 1.8 1 0 0 1 1 1 0 GHKL domain DUF523 PF04463.7 gi|330508231|ref|YP_004384659.1| - 1.3e-37 128.7 0.0 2e-37 128.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|330508231|ref|YP_004384659.1| - 4.2e-37 126.5 0.3 5.8e-37 126.1 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) DUF3283 PF11686.3 gi|330508231|ref|YP_004384659.1| - 0.084 12.6 0.3 0.17 11.7 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3283) DUF2807 PF10988.3 gi|330508232|ref|YP_004384660.1| - 2.4e-48 164.0 0.4 2.4e-48 164.0 0.2 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2807) DUF4098 PF13345.1 gi|330508232|ref|YP_004384660.1| - 0.0075 16.1 3.5 0.0075 16.1 2.4 3.2 2 1 2 4 4 4 2 Domain of unknown function (DUF4098) CTP_transf_1 PF01148.15 gi|330508233|ref|YP_004384661.1| - 3.2e-06 26.9 21.7 0.00025 20.8 15.5 2.9 1 1 0 1 1 1 1 Cytidylyltransferase family DAO PF01266.19 gi|330508234|ref|YP_004384662.1| - 1e-14 54.2 2.8 3.2e-13 49.3 0.2 2.5 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330508234|ref|YP_004384662.1| - 7e-14 51.4 1.1 7.8e-07 28.2 0.1 2.5 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.17 gi|330508234|ref|YP_004384662.1| - 3.3e-13 49.2 0.0 2.4e-05 23.4 0.0 3.0 2 1 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|330508234|ref|YP_004384662.1| - 2.9e-12 46.9 0.1 1e-06 28.7 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|330508234|ref|YP_004384662.1| - 3.1e-11 42.4 0.0 9.3e-08 30.9 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|330508234|ref|YP_004384662.1| - 2.2e-06 27.0 0.0 3.4e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|330508234|ref|YP_004384662.1| - 3.7e-06 26.2 0.2 8.3e-06 25.0 0.1 1.6 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|330508234|ref|YP_004384662.1| - 4e-06 26.7 0.1 4e-06 26.7 0.0 2.2 3 0 0 3 3 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|330508234|ref|YP_004384662.1| - 1.6e-05 24.1 0.4 0.00012 21.3 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|330508234|ref|YP_004384662.1| - 2.7e-05 23.2 0.1 4.2e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|330508234|ref|YP_004384662.1| - 0.0002 21.7 0.0 0.08 13.3 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|330508234|ref|YP_004384662.1| - 0.0003 20.8 0.0 0.0011 19.0 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|330508234|ref|YP_004384662.1| - 0.0057 16.4 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding GMC_oxred_N PF00732.14 gi|330508234|ref|YP_004384662.1| - 0.021 14.0 0.0 0.57 9.2 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase NAD_binding_7 PF13241.1 gi|330508234|ref|YP_004384662.1| - 0.11 12.7 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding MFS_1 PF07690.11 gi|330508235|ref|YP_004384663.1| - 9.1e-43 146.3 71.5 7.4e-36 123.5 29.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330508235|ref|YP_004384663.1| - 0.25 9.8 33.4 0.024 13.2 9.1 2.6 1 1 0 2 2 2 0 Sugar (and other) transporter FmdE PF02663.9 gi|330508236|ref|YP_004384664.1| - 2.3e-40 137.5 0.1 1.4e-26 92.8 0.0 2.1 2 0 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Flavin_Reduct PF01613.13 gi|330508237|ref|YP_004384665.1| - 2.1e-22 79.6 0.0 2.5e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|330508237|ref|YP_004384665.1| - 6.8e-05 22.5 0.0 0.00011 21.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CbiA PF01656.18 gi|330508238|ref|YP_004384666.1| - 1.8e-18 66.6 0.0 2.7e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|330508238|ref|YP_004384666.1| - 2.5e-08 34.0 0.0 1.3e-06 28.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|330508238|ref|YP_004384666.1| - 1.5e-07 30.7 0.2 2.7e-07 29.9 0.2 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_10 PF12846.2 gi|330508238|ref|YP_004384666.1| - 5.9e-06 25.9 0.1 1.4e-05 24.6 0.1 1.7 2 0 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|330508238|ref|YP_004384666.1| - 6.6e-06 25.8 0.1 0.00089 18.9 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Fer4_NifH PF00142.13 gi|330508238|ref|YP_004384666.1| - 1.3e-05 24.5 3.0 0.00013 21.2 0.1 2.3 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|330508238|ref|YP_004384666.1| - 4e-05 22.8 0.1 0.0013 17.8 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ APS_kinase PF01583.15 gi|330508238|ref|YP_004384666.1| - 4.2e-05 23.2 0.0 8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.7 gi|330508238|ref|YP_004384666.1| - 0.00019 20.6 0.0 0.00067 18.8 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_17 PF13207.1 gi|330508238|ref|YP_004384666.1| - 0.0003 21.6 0.1 0.00064 20.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain TrkA_N PF02254.13 gi|330508238|ref|YP_004384666.1| - 0.00036 20.4 0.1 0.062 13.3 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain DUF87 PF01935.12 gi|330508238|ref|YP_004384666.1| - 0.00046 20.0 0.0 0.0009 19.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF87 SRP54 PF00448.17 gi|330508238|ref|YP_004384666.1| - 0.00052 19.5 0.0 0.0016 17.9 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain KTI12 PF08433.5 gi|330508238|ref|YP_004384666.1| - 0.00088 18.5 0.0 0.0016 17.7 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_25 PF13481.1 gi|330508238|ref|YP_004384666.1| - 0.0022 17.4 0.0 0.0081 15.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain KAP_NTPase PF07693.9 gi|330508238|ref|YP_004384666.1| - 0.005 15.8 0.0 0.0074 15.3 0.0 1.5 1 1 0 1 1 1 1 KAP family P-loop domain TrwB_AAD_bind PF10412.4 gi|330508238|ref|YP_004384666.1| - 0.005 15.4 0.0 0.0076 14.9 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.22 gi|330508238|ref|YP_004384666.1| - 0.0058 16.9 0.0 0.0081 16.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter KaiC PF06745.8 gi|330508238|ref|YP_004384666.1| - 0.012 14.7 0.2 0.028 13.5 0.0 1.6 2 0 0 2 2 2 0 KaiC ArgK PF03308.11 gi|330508238|ref|YP_004384666.1| - 0.022 13.5 0.5 0.052 12.3 0.1 1.8 2 0 0 2 2 2 0 ArgK protein T2SE PF00437.15 gi|330508238|ref|YP_004384666.1| - 0.022 13.6 0.0 0.033 13.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|330508238|ref|YP_004384666.1| - 0.044 14.0 0.2 0.17 12.2 0.0 2.0 2 1 0 2 2 2 0 AAA domain Miro PF08477.8 gi|330508238|ref|YP_004384666.1| - 0.048 14.1 0.1 0.11 12.9 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein AAA_33 PF13671.1 gi|330508238|ref|YP_004384666.1| - 0.059 13.2 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|330508238|ref|YP_004384666.1| - 0.077 12.7 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Thymidylate_kin PF02223.12 gi|330508238|ref|YP_004384666.1| - 0.11 11.8 0.0 0.24 10.7 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase YhjQ PF06564.7 gi|330508238|ref|YP_004384666.1| - 0.11 11.7 0.0 0.28 10.5 0.0 1.5 2 0 0 2 2 2 0 YhjQ protein RNA_helicase PF00910.17 gi|330508238|ref|YP_004384666.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase SBP_bac_5 PF00496.17 gi|330508239|ref|YP_004384667.1| - 1.8e-76 257.4 0.4 2.2e-76 257.0 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Glyco_hydro_101 PF12905.2 gi|330508239|ref|YP_004384667.1| - 0.049 12.2 0.0 0.074 11.6 0.0 1.2 1 0 0 1 1 1 0 Endo-alpha-N-acetylgalactosaminidase EspA PF03433.8 gi|330508239|ref|YP_004384667.1| - 0.072 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 EspA-like secreted protein ABC_tran PF00005.22 gi|330508240|ref|YP_004384668.1| - 2.1e-28 99.3 0.0 4.2e-28 98.3 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|330508240|ref|YP_004384668.1| - 1.5e-15 57.9 0.1 1.1e-08 35.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|330508240|ref|YP_004384668.1| - 1.6e-09 37.3 0.0 3e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|330508240|ref|YP_004384668.1| - 1.3e-05 24.5 0.0 2.4e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|330508240|ref|YP_004384668.1| - 0.0001 20.9 0.0 0.045 12.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|330508240|ref|YP_004384668.1| - 0.0055 17.0 0.6 0.0086 16.4 0.4 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|330508240|ref|YP_004384668.1| - 0.0099 16.6 0.1 0.018 15.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|330508240|ref|YP_004384668.1| - 0.011 14.4 0.0 0.016 13.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|330508240|ref|YP_004384668.1| - 0.017 15.0 0.0 0.043 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|330508240|ref|YP_004384668.1| - 0.019 14.1 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|330508240|ref|YP_004384668.1| - 0.045 12.9 0.0 0.92 8.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_14 PF13173.1 gi|330508240|ref|YP_004384668.1| - 0.057 13.3 0.0 1.6 8.6 0.0 2.2 1 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|330508240|ref|YP_004384668.1| - 0.075 13.2 0.1 0.38 10.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|330508240|ref|YP_004384668.1| - 0.08 13.4 0.0 0.2 12.1 0.0 1.7 2 0 0 2 2 1 0 Miro-like protein RNA_helicase PF00910.17 gi|330508240|ref|YP_004384668.1| - 0.095 12.8 0.0 0.24 11.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase MutS_V PF00488.16 gi|330508240|ref|YP_004384668.1| - 0.097 12.0 0.0 0.3 10.4 0.0 1.8 3 0 0 3 3 3 0 MutS domain V ArgK PF03308.11 gi|330508240|ref|YP_004384668.1| - 0.12 11.0 0.0 0.2 10.3 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_10 PF12846.2 gi|330508240|ref|YP_004384668.1| - 0.14 11.5 0.1 0.8 9.0 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|330508240|ref|YP_004384668.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.19 gi|330508241|ref|YP_004384669.1| - 8e-20 70.8 25.0 8e-20 70.8 17.3 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330508241|ref|YP_004384669.1| - 1e-11 44.4 30.8 1e-11 44.4 21.4 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|330508241|ref|YP_004384669.1| - 0.017 13.9 18.6 0.02 13.7 12.3 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein Alpha-amyl_C PF09071.5 gi|330508241|ref|YP_004384669.1| - 0.08 12.7 2.4 7.4 6.4 0.0 3.1 3 0 0 3 3 3 0 Alpha-amylase, C terminal FpoO PF10621.4 gi|330508242|ref|YP_004384670.1| - 8.8e-12 45.1 0.1 9.4e-12 45.0 0.0 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO tRNA_anti-codon PF01336.20 gi|330508243|ref|YP_004384671.1| - 1.3e-05 24.9 0.0 2.5e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|330508243|ref|YP_004384671.1| - 0.00044 19.7 0.1 0.0058 16.1 0.0 2.0 1 1 1 2 2 2 1 tRNA_anti-like SelB-wing_3 PF09107.6 gi|330508243|ref|YP_004384671.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Elongation factor SelB, winged helix SAM_adeno_trans PF01887.11 gi|330508244|ref|YP_004384672.1| - 5.6e-76 255.0 0.0 6.8e-76 254.7 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Bac_luciferase PF00296.15 gi|330508245|ref|YP_004384673.1| - 7.6e-62 209.1 0.0 9.2e-62 208.9 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PHP PF02811.14 gi|330508245|ref|YP_004384673.1| - 0.16 11.7 0.0 0.43 10.3 0.0 1.8 1 1 0 1 1 1 0 PHP domain CTP_transf_2 PF01467.21 gi|330508246|ref|YP_004384674.1| - 2e-18 66.8 0.0 2.6e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|330508246|ref|YP_004384674.1| - 0.032 13.7 0.0 0.35 10.2 0.0 2.1 2 0 0 2 2 2 0 Citrate lyase ligase C-terminal domain FAD_syn PF06574.7 gi|330508246|ref|YP_004384674.1| - 0.039 13.5 0.0 0.06 12.9 0.0 1.3 1 0 0 1 1 1 0 FAD synthetase DUF4277 PF14104.1 gi|330508247|ref|YP_004384675.1| - 1.5e-39 134.7 0.0 3.1e-39 133.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|330508247|ref|YP_004384675.1| - 6.3e-09 35.6 0.2 4.9e-08 32.7 0.1 2.1 1 1 0 1 1 1 1 Transposase DDE domain CDC27 PF09507.5 gi|330508247|ref|YP_004384675.1| - 0.037 13.2 0.0 0.052 12.7 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 DUF333 PF03891.10 gi|330508249|ref|YP_004384677.1| - 9e-09 35.0 1.3 2.4e-08 33.6 0.9 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF333) DEDD_Tnp_IS110 PF01548.12 gi|330508250|ref|YP_004384678.1| - 3.2e-25 88.4 0.1 8.7e-25 87.0 0.0 1.8 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.11 gi|330508250|ref|YP_004384678.1| - 1.1e-24 86.3 0.0 2.4e-24 85.2 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family YfkB PF08756.5 gi|330508250|ref|YP_004384678.1| - 0.028 13.9 0.0 0.08 12.5 0.0 1.8 1 0 0 1 1 1 0 YfkB-like domain Transglut_core PF01841.14 gi|330508251|ref|YP_004384679.1| - 2.3e-05 24.5 0.0 8.5e-05 22.7 0.0 1.8 1 1 1 2 2 2 1 Transglutaminase-like superfamily TPR_11 PF13414.1 gi|330508252|ref|YP_004384680.1| - 9.1e-35 118.1 14.2 5.7e-15 54.7 0.5 2.5 1 1 2 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|330508252|ref|YP_004384680.1| - 1.4e-22 77.7 10.6 2e-07 30.3 0.1 4.8 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330508252|ref|YP_004384680.1| - 8.1e-21 72.7 12.9 2.9e-09 36.1 0.1 4.6 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330508252|ref|YP_004384680.1| - 5.6e-17 60.4 5.9 3.1e-06 26.9 0.1 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330508252|ref|YP_004384680.1| - 1.3e-15 57.5 2.1 1.9e-08 34.7 0.1 3.1 2 1 3 5 5 4 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330508252|ref|YP_004384680.1| - 1.2e-13 50.7 6.3 9.2e-07 28.7 0.0 3.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330508252|ref|YP_004384680.1| - 3.9e-13 49.5 3.9 5.1e-07 29.9 0.1 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330508252|ref|YP_004384680.1| - 1e-12 47.4 5.1 0.00023 21.5 0.1 3.9 2 1 2 4 4 3 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330508252|ref|YP_004384680.1| - 1.4e-12 47.2 0.7 1.8e-07 30.9 0.0 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330508252|ref|YP_004384680.1| - 1.7e-10 39.8 8.8 0.00045 19.8 0.0 4.5 4 1 0 4 4 4 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|330508252|ref|YP_004384680.1| - 8.8e-10 38.5 3.3 0.0009 19.3 0.3 3.7 3 1 1 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|330508252|ref|YP_004384680.1| - 2.9e-07 29.7 2.0 0.05 13.4 0.3 3.8 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330508252|ref|YP_004384680.1| - 5.1e-05 23.0 1.2 0.056 13.3 0.1 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|330508252|ref|YP_004384680.1| - 0.00023 20.0 0.8 0.12 11.0 0.0 2.6 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|330508252|ref|YP_004384680.1| - 0.00087 19.1 0.5 0.88 9.5 0.0 3.2 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_4 PF07721.9 gi|330508252|ref|YP_004384680.1| - 0.0011 19.2 1.5 1.5 9.4 0.0 3.0 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330508252|ref|YP_004384680.1| - 0.0014 18.9 6.0 0.51 10.9 0.0 4.3 5 0 0 5 5 5 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|330508252|ref|YP_004384680.1| - 0.0042 16.8 2.1 0.35 10.7 0.1 2.5 1 1 1 2 2 2 1 Anaphase-promoting complex subunit 5 DUF3856 PF12968.2 gi|330508252|ref|YP_004384680.1| - 0.024 14.4 1.2 3.8 7.3 0.0 2.9 1 1 1 3 3 3 0 Domain of Unknown Function (DUF3856) ChAPs PF09295.5 gi|330508252|ref|YP_004384680.1| - 0.067 11.9 0.8 0.39 9.4 0.1 1.9 1 1 1 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_3 PF07720.7 gi|330508252|ref|YP_004384680.1| - 0.069 12.9 2.4 19 5.2 0.1 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat FAT PF02259.18 gi|330508252|ref|YP_004384680.1| - 0.15 11.0 3.5 0.95 8.3 0.2 2.5 1 1 2 3 3 3 0 FAT domain HEPN PF05168.9 gi|330508252|ref|YP_004384680.1| - 3.2 7.6 5.9 1.7 8.5 0.1 3.1 4 0 0 4 4 4 0 HEPN domain DUF4352 PF11611.3 gi|330508253|ref|YP_004384681.1| - 0.0033 17.5 0.0 0.1 12.7 0.0 2.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4352) C6 PF01681.12 gi|330508254|ref|YP_004384682.1| - 0.36 10.9 4.7 0.23 11.5 1.5 1.9 1 1 1 2 2 2 0 C6 domain PAT1 PF09770.4 gi|330508254|ref|YP_004384682.1| - 1.9 6.5 11.1 2.4 6.2 7.7 1.0 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 Mucin PF01456.12 gi|330508255|ref|YP_004384683.1| - 5.2 6.8 15.2 9 6.0 10.5 1.5 1 1 0 1 1 1 0 Mucin-like glycoprotein Transglut_core PF01841.14 gi|330508256|ref|YP_004384684.1| - 3.5e-06 27.1 0.0 1.9e-05 24.8 0.0 2.1 1 1 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core PF01841.14 gi|330508257|ref|YP_004384685.1| - 4.4e-05 23.6 0.0 9.1e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF1491 PF07372.7 gi|330508257|ref|YP_004384685.1| - 0.046 13.6 1.9 38 4.2 0.1 4.4 3 1 2 5 5 5 0 Protein of unknown function (DUF1491) Transglut_core PF01841.14 gi|330508258|ref|YP_004384686.1| - 1.2e-06 28.6 0.0 3e-05 24.1 0.0 2.3 1 1 1 2 2 2 1 Transglutaminase-like superfamily DERM PF14704.1 gi|330508258|ref|YP_004384686.1| - 0.0014 18.5 0.0 0.26 11.2 0.0 3.3 2 1 1 3 3 3 1 Dermatopontin Phage_B PF02304.10 gi|330508258|ref|YP_004384686.1| - 0.02 15.1 0.3 28 5.0 0.0 4.9 6 0 0 6 6 6 0 Scaffold protein B Transglut_core PF01841.14 gi|330508259|ref|YP_004384687.1| - 1.3e-06 28.6 0.0 3.4e-05 24.0 0.0 2.3 1 1 1 2 2 2 1 Transglutaminase-like superfamily DERM PF14704.1 gi|330508259|ref|YP_004384687.1| - 0.0062 16.5 0.0 1.5 8.7 0.0 3.2 1 1 3 4 4 4 3 Dermatopontin WD40 PF00400.27 gi|330508259|ref|YP_004384687.1| - 0.045 13.6 0.7 12 5.9 0.0 4.1 3 0 0 3 3 3 0 WD domain, G-beta repeat Transglut_core PF01841.14 gi|330508260|ref|YP_004384688.1| - 4.4e-06 26.8 0.0 1.6e-05 25.0 0.0 1.8 1 1 1 2 2 2 1 Transglutaminase-like superfamily DUF4166 PF13761.1 gi|330508260|ref|YP_004384688.1| - 0.0023 17.8 1.0 79 3.0 0.0 5.6 5 1 1 6 6 6 0 Domain of unknown function (DUF4166) DUF2559 PF10832.3 gi|330508260|ref|YP_004384688.1| - 0.036 13.8 4.8 85 3.0 0.0 4.8 5 0 0 5 5 5 0 Protein of unknown function (DUF2559) AAA_18 PF13238.1 gi|330508261|ref|YP_004384689.1| - 8.8e-11 42.2 0.0 1.3e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|330508261|ref|YP_004384689.1| - 8.5e-09 36.2 0.1 1.9e-08 35.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|330508261|ref|YP_004384689.1| - 3.2e-08 33.5 0.0 4.9e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|330508261|ref|YP_004384689.1| - 0.0018 18.2 0.0 0.0032 17.3 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase Zeta_toxin PF06414.7 gi|330508261|ref|YP_004384689.1| - 0.026 13.6 0.1 0.064 12.3 0.0 1.6 1 1 0 1 1 1 0 Zeta toxin SRP54 PF00448.17 gi|330508261|ref|YP_004384689.1| - 0.026 13.9 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Radical_SAM PF04055.16 gi|330508262|ref|YP_004384690.1| - 3.1e-14 53.5 0.1 7.4e-14 52.2 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330508262|ref|YP_004384690.1| - 4.9e-09 36.4 0.0 1.3e-08 35.0 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330508262|ref|YP_004384690.1| - 1.2e-05 25.3 0.1 4.5e-05 23.4 0.1 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain VirArc_Nuclease PF12187.3 gi|330508263|ref|YP_004384691.1| - 0.093 12.1 0.2 0.15 11.4 0.1 1.3 1 0 0 1 1 1 0 Viral/Archaeal nuclease DUF1090 PF06476.7 gi|330508263|ref|YP_004384691.1| - 0.54 9.9 14.2 1.3 8.7 0.8 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1090) DASH_Dad3 PF08656.5 gi|330508263|ref|YP_004384691.1| - 0.71 9.6 0.0 0.71 9.6 0.0 4.8 5 2 0 5 5 5 0 DASH complex subunit Dad3 AAA_13 PF13166.1 gi|330508263|ref|YP_004384691.1| - 1.9 6.8 16.8 0.34 9.3 2.3 2.3 1 1 1 2 2 2 0 AAA domain OmpH PF03938.9 gi|330508263|ref|YP_004384691.1| - 3.2 7.6 11.5 8 6.3 0.7 2.5 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Prominin PF05478.6 gi|330508263|ref|YP_004384691.1| - 5.1 4.5 7.9 0.83 7.1 1.7 2.1 1 1 1 3 3 3 0 Prominin DEAD PF00270.24 gi|330508264|ref|YP_004384692.1| - 6.3e-29 100.6 0.0 1.4e-28 99.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|330508264|ref|YP_004384692.1| - 8.2e-09 35.2 0.0 2.5e-08 33.6 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|330508264|ref|YP_004384692.1| - 3.9e-07 30.1 1.8 2.7e-06 27.4 0.1 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|330508264|ref|YP_004384692.1| - 7.2e-06 25.9 0.0 2.7e-05 24.0 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|330508264|ref|YP_004384692.1| - 0.038 13.6 0.0 0.52 10.1 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|330508264|ref|YP_004384692.1| - 0.073 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus Aminotran_1_2 PF00155.16 gi|330508265|ref|YP_004384693.1| - 4.1e-61 206.9 0.0 4.7e-61 206.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II ApbE PF02424.10 gi|330508265|ref|YP_004384693.1| - 0.07 12.3 0.0 0.17 11.1 0.0 1.6 2 0 0 2 2 2 0 ApbE family tRNA-synt_1 PF00133.17 gi|330508266|ref|YP_004384694.1| - 5.9e-58 196.3 0.0 1.4e-43 148.8 0.0 3.1 3 0 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|330508266|ref|YP_004384694.1| - 8.4e-24 83.9 0.1 2.6e-10 39.5 0.1 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|330508266|ref|YP_004384694.1| - 2.1e-21 76.2 0.0 4.2e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|330508266|ref|YP_004384694.1| - 8.7e-09 34.9 0.0 2e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|330508266|ref|YP_004384694.1| - 3.7e-07 29.5 0.0 0.00037 19.7 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|330508266|ref|YP_004384694.1| - 0.0016 17.3 0.0 0.0032 16.3 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|330508266|ref|YP_004384694.1| - 0.026 13.2 0.0 0.044 12.4 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (K) CPSase_L_D3 PF02787.14 gi|330508266|ref|YP_004384694.1| - 0.033 13.9 0.2 0.097 12.4 0.1 1.8 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DUF4411 PF14367.1 gi|330508268|ref|YP_004384696.1| - 0.0037 16.9 0.0 0.0084 15.8 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4411) PIN PF01850.16 gi|330508268|ref|YP_004384696.1| - 0.0048 17.2 0.0 0.006 16.8 0.0 1.1 1 0 0 1 1 1 1 PIN domain tRNA_lig_kinase PF08303.6 gi|330508268|ref|YP_004384696.1| - 0.21 11.4 1.4 0.61 9.9 0.5 1.9 1 1 0 2 2 2 0 tRNA ligase kinase domain UPF0150 PF03681.10 gi|330508270|ref|YP_004384698.1| - 5.8e-11 41.8 0.5 9.1e-11 41.2 0.4 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) YcfA PF07927.7 gi|330508271|ref|YP_004384699.1| - 0.086 12.7 0.0 0.094 12.6 0.0 1.1 1 0 0 1 1 1 0 YcfA-like protein zf-FPG_IleRS PF06827.9 gi|330508272|ref|YP_004384700.1| - 0.0016 18.0 0.6 0.5 10.0 0.0 2.4 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS zf-C4_Topoisom PF01396.14 gi|330508272|ref|YP_004384700.1| - 0.0029 17.0 1.5 0.024 14.1 0.2 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|330508272|ref|YP_004384700.1| - 0.004 17.4 0.3 0.0053 17.0 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-C2HC5 PF06221.8 gi|330508272|ref|YP_004384700.1| - 0.014 15.1 0.6 3.5 7.4 0.1 2.2 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type DNA_ligase_ZBD PF03119.11 gi|330508272|ref|YP_004384700.1| - 0.019 14.6 5.0 0.026 14.2 0.1 2.8 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.9 gi|330508272|ref|YP_004384700.1| - 0.025 14.0 1.9 0.085 12.3 0.2 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif Zn-ribbon_8 PF09723.5 gi|330508272|ref|YP_004384700.1| - 0.032 14.1 1.7 0.31 11.0 0.0 2.5 2 1 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|330508272|ref|YP_004384700.1| - 0.08 12.7 0.8 0.43 10.4 0.6 2.0 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|330508272|ref|YP_004384700.1| - 0.085 12.1 0.6 1.4 8.3 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding CGGC PF08821.6 gi|330508272|ref|YP_004384700.1| - 0.093 12.8 0.8 0.13 12.3 0.5 1.3 1 1 0 1 1 1 0 CGGC domain zf-ribbon_3 PF13248.1 gi|330508272|ref|YP_004384700.1| - 0.16 11.2 2.6 1 8.6 1.9 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF326 PF03860.11 gi|330508272|ref|YP_004384700.1| - 0.19 11.5 0.5 0.19 11.5 0.3 1.7 2 0 0 2 2 1 0 Domain of Unknown Function (DUF326) ADK_lid PF05191.9 gi|330508272|ref|YP_004384700.1| - 0.23 11.1 2.7 6.4 6.5 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.1 gi|330508272|ref|YP_004384700.1| - 0.26 10.8 1.8 11 5.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|330508272|ref|YP_004384700.1| - 0.26 11.2 0.3 0.26 11.2 0.2 2.4 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|330508272|ref|YP_004384700.1| - 0.39 10.2 2.4 2.9 7.4 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain YhfH PF14149.1 gi|330508272|ref|YP_004384700.1| - 0.7 9.7 3.4 4 7.3 0.1 2.5 2 0 0 2 2 2 0 YhfH-like protein DUF4258 PF14076.1 gi|330508273|ref|YP_004384701.1| - 1.5e-14 53.7 0.0 2.6e-14 52.9 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4258) CrtC PF07143.6 gi|330508274|ref|YP_004384702.1| - 3e-09 36.6 3.2 4.8e-09 35.9 2.2 1.4 1 0 0 1 1 1 1 Hydroxyneurosporene synthase (CrtC) Lysine_decarbox PF03641.9 gi|330508275|ref|YP_004384703.1| - 1.5e-12 47.4 0.1 2.3e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|330508275|ref|YP_004384703.1| - 6.3e-05 21.9 2.2 0.0084 15.0 0.3 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A DUF387 PF04079.11 gi|330508277|ref|YP_004384705.1| - 1.8e-37 128.1 0.5 3.2e-37 127.3 0.0 1.6 2 0 0 2 2 2 1 Putative transcriptional regulators (Ypuh-like) HTH_24 PF13412.1 gi|330508277|ref|YP_004384705.1| - 0.0035 16.6 0.5 0.81 9.1 0.0 2.8 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|330508277|ref|YP_004384705.1| - 0.026 14.2 1.5 0.26 11.1 0.1 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.17 gi|330508277|ref|YP_004384705.1| - 0.038 13.6 1.2 0.86 9.3 0.3 2.9 2 1 0 2 2 2 0 MarR family TrmB PF01978.14 gi|330508277|ref|YP_004384705.1| - 0.073 12.7 0.1 0.32 10.7 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF556 PF04476.8 gi|330508277|ref|YP_004384705.1| - 0.097 11.8 0.0 0.21 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF556) GntR PF00392.16 gi|330508277|ref|YP_004384705.1| - 0.17 11.3 1.9 0.93 8.9 0.2 3.0 4 0 0 4 4 4 0 Bacterial regulatory proteins, gntR family SNF2_N PF00176.18 gi|330508278|ref|YP_004384706.1| - 5.3e-23 81.2 0.0 1e-22 80.3 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3883 PF13020.1 gi|330508278|ref|YP_004384706.1| - 3.5e-20 71.5 0.0 1.2e-19 69.8 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) Helicase_C PF00271.26 gi|330508278|ref|YP_004384706.1| - 7.3e-16 57.7 0.0 2.9e-15 55.9 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|330508278|ref|YP_004384706.1| - 7.6e-10 38.9 0.6 2.4e-09 37.2 0.0 2.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|330508278|ref|YP_004384706.1| - 7.8e-09 35.2 0.0 1.8e-08 34.1 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA PF00004.24 gi|330508278|ref|YP_004384706.1| - 1.4e-05 25.3 0.0 0.0011 19.2 0.0 2.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|330508278|ref|YP_004384706.1| - 3.2e-05 23.0 0.0 7.2e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Flavi_DEAD PF07652.9 gi|330508278|ref|YP_004384706.1| - 0.0024 17.6 0.0 0.0051 16.5 0.0 1.5 1 0 0 1 1 1 1 Flavivirus DEAD domain Helicase_RecD PF05127.9 gi|330508278|ref|YP_004384706.1| - 0.0037 16.9 0.0 0.011 15.4 0.0 1.7 1 0 0 1 1 1 1 Helicase Helicase_C_4 PF13871.1 gi|330508278|ref|YP_004384706.1| - 0.0095 15.3 1.0 0.043 13.2 0.0 2.5 3 1 0 3 3 3 1 Helicase_C-like AAA_34 PF13872.1 gi|330508278|ref|YP_004384706.1| - 0.064 12.0 0.0 0.26 10.0 0.0 1.9 1 1 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 TIMP PF00965.12 gi|330508278|ref|YP_004384706.1| - 0.39 10.3 0.0 0.75 9.3 0.0 1.4 1 0 0 1 1 1 0 Tissue inhibitor of metalloproteinase UPF0175 PF03683.8 gi|330508279|ref|YP_004384707.1| - 1.1e-10 40.7 0.0 1.7e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF3368 PF11848.3 gi|330508280|ref|YP_004384708.1| - 0.00047 19.6 0.1 0.00096 18.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) Fcf1 PF04900.7 gi|330508280|ref|YP_004384708.1| - 0.016 15.2 0.0 0.036 14.1 0.0 1.5 1 1 0 1 1 1 0 Fcf1 RSV_NS2 PF03113.9 gi|330508280|ref|YP_004384708.1| - 0.039 13.8 0.5 0.071 13.0 0.3 1.4 1 0 0 1 1 1 0 Respiratory synctial virus non-structural protein NS2 Phage_portal PF04860.7 gi|330508280|ref|YP_004384708.1| - 0.13 10.8 0.0 0.27 9.8 0.0 1.6 1 1 0 1 1 1 0 Phage portal protein DUF1156 PF06634.7 gi|330508282|ref|YP_004384710.1| - 1.3e-25 88.9 1.7 3.9e-25 87.3 1.2 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|330508282|ref|YP_004384710.1| - 3e-06 27.2 0.6 0.00011 22.1 0.4 2.6 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|330508282|ref|YP_004384710.1| - 0.0012 18.4 0.3 0.45 10.0 0.0 2.8 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|330508282|ref|YP_004384710.1| - 0.0015 18.0 0.0 0.0051 16.2 0.0 1.7 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase DUF4423 PF14394.1 gi|330508283|ref|YP_004384711.1| - 0.027 14.0 0.0 0.03 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) GntR PF00392.16 gi|330508283|ref|YP_004384711.1| - 0.13 11.7 0.1 0.2 11.1 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF499 PF04465.7 gi|330508284|ref|YP_004384712.1| - 7e-18 63.6 0.0 7e-16 57.0 0.0 2.9 3 0 0 3 3 3 2 Protein of unknown function (DUF499) Big_2 PF02368.13 gi|330508284|ref|YP_004384712.1| - 0.051 13.4 0.1 11 5.9 0.1 2.8 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 2) NSP13 PF06460.7 gi|330508284|ref|YP_004384712.1| - 0.11 11.4 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NSP13 ScpA_ScpB PF02616.9 gi|330508285|ref|YP_004384713.1| - 2.8e-33 115.5 0.1 4.5e-33 114.8 0.1 1.4 1 0 0 1 1 1 1 ScpA/B protein Snf7 PF03357.16 gi|330508285|ref|YP_004384713.1| - 0.076 12.4 0.5 0.15 11.4 0.3 1.5 1 0 0 1 1 1 0 Snf7 SMC_N PF02463.14 gi|330508286|ref|YP_004384714.1| - 9.5e-68 227.7 1.0 1.2e-67 227.3 0.7 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|330508286|ref|YP_004384714.1| - 3.9e-30 104.2 0.0 3.2e-29 101.3 0.0 2.4 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|330508286|ref|YP_004384714.1| - 2.4e-18 67.1 0.1 2.4e-18 67.1 0.0 6.2 2 2 1 3 3 1 1 AAA domain AAA_21 PF13304.1 gi|330508286|ref|YP_004384714.1| - 2.7e-10 40.7 7.4 5.3e-05 23.3 0.0 3.5 4 0 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|330508286|ref|YP_004384714.1| - 1.6e-07 30.7 0.0 3.6e-07 29.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|330508286|ref|YP_004384714.1| - 1.6e-06 27.4 0.1 1.6e-06 27.4 0.1 4.3 3 2 0 4 4 4 2 AAA ATPase domain IncA PF04156.9 gi|330508286|ref|YP_004384714.1| - 0.00054 19.6 102.3 0.0026 17.4 12.5 6.7 2 2 5 7 7 7 4 IncA protein MscS_porin PF12795.2 gi|330508286|ref|YP_004384714.1| - 0.0041 16.4 6.6 0.0041 16.4 4.6 5.8 2 2 4 6 6 6 2 Mechanosensitive ion channel porin domain AAA_22 PF13401.1 gi|330508286|ref|YP_004384714.1| - 0.05 13.7 4.5 9.9 6.3 0.2 4.1 4 0 0 4 4 4 0 AAA domain SlyX PF04102.7 gi|330508286|ref|YP_004384714.1| - 0.57 10.5 48.7 0.32 11.4 1.4 9.4 6 3 2 8 8 8 0 SlyX Reo_sigmaC PF04582.7 gi|330508286|ref|YP_004384714.1| - 0.97 8.5 19.7 0.092 11.9 0.4 4.9 2 2 3 6 6 6 0 Reovirus sigma C capsid protein ABC_tran PF00005.22 gi|330508286|ref|YP_004384714.1| - 1.2 9.4 0.0 1.2 9.4 0.0 4.7 3 2 0 3 3 3 0 ABC transporter FtsK_SpoIIIE PF01580.13 gi|330508286|ref|YP_004384714.1| - 1.7 8.0 11.6 1.5 8.2 0.0 3.8 3 0 0 3 3 3 0 FtsK/SpoIIIE family Filament PF00038.16 gi|330508286|ref|YP_004384714.1| - 3.4 7.0 79.1 0.053 12.9 2.8 5.1 2 2 0 4 4 4 0 Intermediate filament protein DUF512 PF04459.7 gi|330508287|ref|YP_004384715.1| - 3.3e-18 65.5 0.0 4.6e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|330508287|ref|YP_004384715.1| - 2.2e-12 47.4 4.6 8.5e-11 42.2 3.2 2.6 1 1 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|330508288|ref|YP_004384716.1| - 2.7e-13 50.4 0.0 1.5e-12 48.0 0.0 2.2 3 0 0 3 3 3 1 Radical SAM superfamily SPASM PF13186.1 gi|330508288|ref|YP_004384716.1| - 6.2e-07 29.6 0.2 6.2e-07 29.6 0.1 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|330508288|ref|YP_004384716.1| - 6.2e-06 26.2 1.2 8.3e-06 25.8 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330508288|ref|YP_004384716.1| - 8.8e-05 22.6 0.0 0.0004 20.5 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF2124 PF09897.4 gi|330508289|ref|YP_004384717.1| - 1.1e-48 164.6 0.4 1.3e-48 164.4 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Y1_Tnp PF01797.11 gi|330508290|ref|YP_004384718.1| - 2.9e-35 120.7 1.0 3.5e-35 120.4 0.7 1.1 1 0 0 1 1 1 1 Transposase IS200 like DUF772 PF05598.6 gi|330508291|ref|YP_004384719.1| - 4.3e-20 71.3 0.0 8.1e-20 70.5 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|330508291|ref|YP_004384719.1| - 2.3e-11 43.6 6.5 4.8e-10 39.3 4.5 3.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|330508291|ref|YP_004384719.1| - 1.5e-05 24.9 0.5 2.6e-05 24.2 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330508291|ref|YP_004384719.1| - 2.1e-05 24.1 0.2 6.3e-05 22.6 0.1 1.8 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_2 PF13586.1 gi|330508291|ref|YP_004384719.1| - 0.015 15.4 2.0 0.02 15.0 0.1 2.0 2 0 0 2 2 2 0 Transposase DDE domain OrfB_Zn_ribbon PF07282.6 gi|330508292|ref|YP_004384720.1| - 7.5e-24 83.1 0.1 2.2e-23 81.6 0.0 1.9 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330508292|ref|YP_004384720.1| - 2.5e-11 43.4 2.5 3.2e-11 43.0 1.7 1.1 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|330508292|ref|YP_004384720.1| - 0.033 14.0 0.8 0.073 12.9 0.6 1.6 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|330508292|ref|YP_004384720.1| - 0.041 13.5 0.0 0.095 12.3 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1610 PF07754.6 gi|330508292|ref|YP_004384720.1| - 0.043 13.9 5.4 1.2 9.2 4.2 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1610) Radical_SAM PF04055.16 gi|330508293|ref|YP_004384721.1| - 7.8e-24 84.7 0.0 1.7e-23 83.5 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|330508293|ref|YP_004384721.1| - 3.1e-20 72.1 0.1 4.8e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|330508293|ref|YP_004384721.1| - 5.4e-07 29.6 0.0 2.8e-06 27.3 0.0 2.0 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330508293|ref|YP_004384721.1| - 0.00016 21.7 0.0 0.00027 21.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF998 PF06197.8 gi|330508294|ref|YP_004384722.1| - 0.00042 19.6 11.1 0.00048 19.4 7.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) 5TM-5TMR_LYT PF07694.7 gi|330508294|ref|YP_004384722.1| - 0.033 13.5 13.2 0.041 13.2 9.2 1.1 1 0 0 1 1 1 0 5TMR of 5TMR-LYT EcsB PF05975.7 gi|330508294|ref|YP_004384722.1| - 0.051 12.0 9.7 0.062 11.7 6.7 1.1 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB GtrA PF04138.9 gi|330508294|ref|YP_004384722.1| - 0.14 12.0 8.8 0.2 11.6 6.1 1.2 1 0 0 1 1 1 0 GtrA-like protein DUF70 PF01901.11 gi|330508294|ref|YP_004384722.1| - 0.46 9.4 11.0 0.65 8.9 7.6 1.3 1 1 0 1 1 1 0 Protein of unknown function DUF70 DUF1129 PF06570.6 gi|330508294|ref|YP_004384722.1| - 0.51 9.6 9.3 0.079 12.2 0.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) ABC2_membrane_5 PF13346.1 gi|330508294|ref|YP_004384722.1| - 0.6 9.3 16.1 1.2 8.4 11.2 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein OST3_OST6 PF04756.8 gi|330508294|ref|YP_004384722.1| - 2.6 7.5 7.8 0.28 10.7 0.6 2.3 3 0 0 3 3 3 0 OST3 / OST6 family DUF2569 PF10754.4 gi|330508294|ref|YP_004384722.1| - 3.3 7.9 10.1 9.1 6.4 7.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2569) PHO4 PF01384.15 gi|330508294|ref|YP_004384722.1| - 4.3 5.8 12.6 6.4 5.3 8.8 1.3 1 1 0 1 1 1 0 Phosphate transporter family DUF3353 PF11833.3 gi|330508294|ref|YP_004384722.1| - 5.1 6.4 11.2 6.4 6.1 7.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) Zip PF02535.17 gi|330508294|ref|YP_004384722.1| - 8.3 5.3 9.0 0.24 10.3 1.2 1.8 2 0 0 2 2 2 0 ZIP Zinc transporter DUF1212 PF06738.7 gi|330508294|ref|YP_004384722.1| - 9.7 5.5 12.3 18 4.7 8.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) Hpt PF01627.18 gi|330508295|ref|YP_004384723.1| - 1.5e-13 50.5 1.1 2.2e-13 50.0 0.8 1.3 1 0 0 1 1 1 1 Hpt domain XkdW PF09636.5 gi|330508295|ref|YP_004384723.1| - 0.082 12.7 0.2 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 XkdW protein DUF2284 PF10050.4 gi|330508296|ref|YP_004384724.1| - 4.8e-53 179.1 0.1 5.5e-53 178.9 0.0 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Usp PF00582.21 gi|330508297|ref|YP_004384725.1| - 2.9e-41 140.9 0.6 3e-21 76.1 0.2 2.8 2 1 0 2 2 2 2 Universal stress protein family DNA_photolyase PF00875.13 gi|330508297|ref|YP_004384725.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 DNA photolyase VIT PF08487.5 gi|330508298|ref|YP_004384726.1| - 1.4e-22 79.5 0.0 2.6e-22 78.7 0.0 1.4 1 0 0 1 1 1 1 Vault protein inter-alpha-trypsin domain VWA_2 PF13519.1 gi|330508298|ref|YP_004384726.1| - 2.4e-21 76.6 0.3 3.7e-21 75.9 0.2 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|330508298|ref|YP_004384726.1| - 1.1e-19 70.6 0.0 1.9e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|330508298|ref|YP_004384726.1| - 5.4e-18 65.3 0.0 8.6e-18 64.6 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VIT_2 PF13757.1 gi|330508298|ref|YP_004384726.1| - 1.4e-08 34.0 0.0 4.6e-08 32.4 0.0 1.9 1 0 0 1 1 1 1 Vault protein inter-alpha-trypsin domain VWA_CoxE PF05762.9 gi|330508298|ref|YP_004384726.1| - 0.00036 19.7 0.0 0.00066 18.8 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein vWA-TerF-like PF10138.4 gi|330508298|ref|YP_004384726.1| - 0.001 18.9 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 vWA found in TerF C terminus DUF2201 PF09967.4 gi|330508298|ref|YP_004384726.1| - 0.0037 17.2 0.1 0.033 14.2 0.0 2.3 2 0 0 2 2 2 1 VWA-like domain (DUF2201) CobT_C PF11775.3 gi|330508298|ref|YP_004384726.1| - 0.0047 16.3 0.0 0.0087 15.5 0.0 1.4 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT VWA domain ArsA_ATPase PF02374.10 gi|330508299|ref|YP_004384727.1| - 9.2e-69 231.7 0.0 1e-68 231.6 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|330508299|ref|YP_004384727.1| - 2.4e-14 53.1 0.0 3.8e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|330508299|ref|YP_004384727.1| - 5.3e-05 23.0 0.2 0.0001 22.1 0.2 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|330508299|ref|YP_004384727.1| - 0.016 15.1 0.0 0.038 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Baculo_LEF5 PF04838.7 gi|330508299|ref|YP_004384727.1| - 0.061 13.0 0.2 0.19 11.4 0.0 1.8 2 0 0 2 2 2 0 Baculoviridae late expression factor 5 Fer4_NifH PF00142.13 gi|330508299|ref|YP_004384727.1| - 0.083 12.0 0.1 0.29 10.2 0.0 1.8 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PAPS_reduct PF01507.14 gi|330508302|ref|YP_004384730.1| - 6.7e-37 126.9 0.0 1.1e-36 126.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|330508302|ref|YP_004384730.1| - 9.7e-06 25.8 13.0 3.6e-05 24.0 9.0 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508302|ref|YP_004384730.1| - 0.0017 18.0 12.0 0.0017 18.0 8.3 2.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330508302|ref|YP_004384730.1| - 0.0096 15.4 2.2 0.0096 15.4 1.5 3.2 4 0 0 4 4 3 2 4Fe-4S binding domain QueC PF06508.8 gi|330508302|ref|YP_004384730.1| - 0.13 11.5 0.0 0.13 11.5 0.0 2.2 2 0 0 2 2 1 0 Queuosine biosynthesis protein QueC Fer4_16 PF13484.1 gi|330508302|ref|YP_004384730.1| - 0.23 12.2 12.9 5.5 7.8 9.0 2.7 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|330508302|ref|YP_004384730.1| - 0.32 11.2 17.8 0.069 13.4 1.6 2.7 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330508302|ref|YP_004384730.1| - 0.91 9.9 14.3 1.2 9.5 1.3 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330508302|ref|YP_004384730.1| - 2.6 8.1 19.9 0.26 11.3 2.4 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330508302|ref|YP_004384730.1| - 4.2 7.4 27.4 0.099 12.5 2.1 3.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330508302|ref|YP_004384730.1| - 7.9 6.5 18.7 2.5 8.1 1.7 3.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain CSD PF00313.17 gi|330508303|ref|YP_004384731.1| - 2.2e-19 68.9 0.7 2.4e-19 68.8 0.5 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1 PF00575.18 gi|330508303|ref|YP_004384731.1| - 0.0049 16.9 0.2 0.0051 16.8 0.2 1.1 1 0 0 1 1 1 1 S1 RNA binding domain OB_RNB PF08206.6 gi|330508303|ref|YP_004384731.1| - 0.017 14.5 1.7 0.03 13.8 1.2 1.5 1 1 0 1 1 1 0 Ribonuclease B OB domain Tex_N PF09371.5 gi|330508304|ref|YP_004384732.1| - 6.1e-64 214.9 1.1 1.1e-63 214.1 0.8 1.4 1 0 0 1 1 1 1 Tex-like protein N-terminal domain HHH_3 PF12836.2 gi|330508304|ref|YP_004384732.1| - 5.9e-27 93.4 0.0 1.2e-26 92.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif S1 PF00575.18 gi|330508304|ref|YP_004384732.1| - 5.9e-21 74.3 2.2 1.5e-20 72.9 1.0 2.1 2 0 0 2 2 2 1 S1 RNA binding domain HHH_7 PF14635.1 gi|330508304|ref|YP_004384732.1| - 6.1e-08 32.7 0.0 1.4e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif YqgF PF14639.1 gi|330508304|ref|YP_004384732.1| - 8.7e-08 31.8 0.3 5.1e-07 29.3 0.0 2.5 3 0 0 3 3 3 1 Holliday-junction resolvase-like of SPT6 HHH PF00633.18 gi|330508304|ref|YP_004384732.1| - 1.9e-05 24.1 0.0 0.00061 19.3 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|330508304|ref|YP_004384732.1| - 0.0002 21.4 0.4 0.02 15.0 0.0 3.1 2 1 1 3 3 3 2 Helix-hairpin-helix domain PsbU PF06514.6 gi|330508304|ref|YP_004384732.1| - 0.0013 18.4 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 Photosystem II 12 kDa extrinsic protein (PsbU) T2SK PF03934.8 gi|330508304|ref|YP_004384732.1| - 0.0024 17.0 0.1 0.01 15.0 0.0 2.0 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein K HHH_6 PF14579.1 gi|330508304|ref|YP_004384732.1| - 0.0045 17.0 0.0 0.019 14.9 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif AAA_25 PF13481.1 gi|330508304|ref|YP_004384732.1| - 0.0046 16.3 0.0 0.19 11.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain DLD PF14878.1 gi|330508304|ref|YP_004384732.1| - 0.065 13.3 0.1 3.4 7.8 0.1 3.1 2 1 0 2 2 2 0 Death-like domain of SPT6 Imm31 PF15595.1 gi|330508304|ref|YP_004384732.1| - 0.12 12.0 0.0 2.2 8.1 0.0 2.3 2 0 0 2 2 2 0 Immunity protein 31 OMPdecase PF00215.19 gi|330508305|ref|YP_004384733.1| - 6.2e-39 133.7 0.1 7.9e-39 133.3 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|330508305|ref|YP_004384733.1| - 0.0048 16.1 0.2 0.013 14.7 0.1 1.7 2 0 0 2 2 2 1 PcrB family ThiG PF05690.9 gi|330508305|ref|YP_004384733.1| - 0.037 13.1 3.3 0.028 13.5 0.4 2.1 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.12 gi|330508305|ref|YP_004384733.1| - 0.046 12.8 0.1 0.09 11.8 0.0 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI DDE_Tnp_1 PF01609.16 gi|330508308|ref|YP_004384736.1| - 3.2e-18 66.0 0.1 6.4e-18 65.0 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330508308|ref|YP_004384736.1| - 0.016 14.7 0.0 0.071 12.7 0.0 2.0 2 0 0 2 2 2 0 DDE superfamily endonuclease zf-RING_UBOX PF13445.1 gi|330508309|ref|YP_004384737.1| - 0.055 13.2 0.9 0.34 10.6 0.6 2.1 1 1 0 1 1 1 0 RING-type zinc-finger Lar_restr_allev PF14354.1 gi|330508309|ref|YP_004384737.1| - 0.078 13.2 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|330508309|ref|YP_004384737.1| - 0.12 11.6 0.6 1.8 7.9 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2082 PF09855.4 gi|330508309|ref|YP_004384737.1| - 0.15 11.9 0.6 0.44 10.4 0.4 2.0 1 1 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) TF_Zn_Ribbon PF08271.7 gi|330508309|ref|YP_004384737.1| - 0.15 11.3 0.8 4.8 6.5 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|330508309|ref|YP_004384737.1| - 0.18 11.2 0.1 0.18 11.2 0.0 1.9 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit WD40 PF00400.27 gi|330508311|ref|YP_004384739.1| - 1e-12 47.4 2.4 0.0021 17.8 0.0 6.3 6 0 0 6 6 6 2 WD domain, G-beta repeat Nbas_N PF15492.1 gi|330508311|ref|YP_004384739.1| - 6.4e-07 28.7 0.4 0.017 14.2 0.0 4.8 2 2 4 6 6 6 2 Neuroblastoma-amplified sequence, N terminal PD40 PF07676.7 gi|330508311|ref|YP_004384739.1| - 1.8e-05 24.2 3.6 2.8 7.7 0.1 5.3 6 0 0 6 6 6 3 WD40-like Beta Propeller Repeat PQQ_2 PF13360.1 gi|330508311|ref|YP_004384739.1| - 5.3e-05 22.8 0.2 0.0017 17.8 0.1 3.0 1 1 1 2 2 2 1 PQQ-like domain Glucosaminidase PF01832.15 gi|330508311|ref|YP_004384739.1| - 0.00017 21.7 0.0 0.00033 20.7 0.0 1.5 1 0 0 1 1 1 1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Asp_decarbox PF02261.11 gi|330508311|ref|YP_004384739.1| - 0.00058 19.4 0.0 25 4.4 0.0 4.7 2 1 3 5 5 5 0 Aspartate decarboxylase Pep_deformylase PF01327.16 gi|330508311|ref|YP_004384739.1| - 0.045 13.1 0.0 3 7.2 0.0 2.4 2 0 0 2 2 2 0 Polypeptide deformylase HTH_Tnp_1 PF01527.15 gi|330508312|ref|YP_004384740.1| - 4.5e-12 45.7 0.1 4.7e-12 45.6 0.1 1.0 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|330508312|ref|YP_004384740.1| - 3.6e-05 23.2 0.2 5.1e-05 22.7 0.2 1.3 1 1 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330508312|ref|YP_004384740.1| - 4.7e-05 23.2 0.0 7.3e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|330508312|ref|YP_004384740.1| - 0.033 14.3 0.0 0.037 14.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Glu_cyclase_2 PF05096.7 gi|330508313|ref|YP_004384741.1| - 8.1e-79 264.3 0.0 1.1e-78 263.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine cyclotransferase Rhomboid PF01694.17 gi|330508314|ref|YP_004384742.1| - 3.3e-30 105.0 19.8 3.3e-30 105.0 13.8 1.6 1 1 1 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|330508314|ref|YP_004384742.1| - 5.9e-06 26.5 0.2 5.9e-06 26.5 0.1 2.5 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) NYN PF01936.13 gi|330508315|ref|YP_004384743.1| - 1e-21 77.7 0.0 1.3e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 NYN domain TatD_DNase PF01026.16 gi|330508316|ref|YP_004384744.1| - 2.2e-65 220.4 0.1 2.5e-65 220.2 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|330508316|ref|YP_004384744.1| - 0.01 15.3 0.0 0.026 14.0 0.0 1.8 1 1 0 1 1 1 0 Amidohydrolase AP_endonuc_2 PF01261.19 gi|330508316|ref|YP_004384744.1| - 0.074 12.3 0.1 0.23 10.7 0.0 1.7 1 1 0 2 2 2 0 Xylose isomerase-like TIM barrel HMGL-like PF00682.14 gi|330508317|ref|YP_004384745.1| - 2.7e-73 246.5 2.1 2.7e-73 246.5 1.4 2.2 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|330508317|ref|YP_004384745.1| - 4.4e-30 104.1 3.1 1e-29 102.9 2.1 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain TPR_11 PF13414.1 gi|330508318|ref|YP_004384746.1| - 8.6e-91 297.6 43.8 2.1e-12 46.5 0.1 8.4 2 2 9 11 11 11 11 TPR repeat TPR_1 PF00515.23 gi|330508318|ref|YP_004384746.1| - 1.7e-69 226.7 20.3 1.4e-09 37.1 0.2 13.5 14 0 0 14 14 14 11 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330508318|ref|YP_004384746.1| - 1.4e-60 196.3 18.8 3e-07 29.8 0.3 13.1 13 0 0 13 13 13 9 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330508318|ref|YP_004384746.1| - 1.6e-47 155.7 22.6 0.0013 18.7 0.3 12.2 12 0 0 12 12 12 10 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330508318|ref|YP_004384746.1| - 5.9e-46 154.2 16.6 3.7e-11 43.3 0.0 7.6 4 2 5 9 9 9 9 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330508318|ref|YP_004384746.1| - 1.3e-42 140.3 17.6 5.2e-05 22.7 0.2 11.7 10 2 2 12 12 12 9 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330508318|ref|YP_004384746.1| - 8.5e-36 119.1 15.4 8.9e-05 22.7 0.0 11.2 1 1 11 12 12 12 10 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330508318|ref|YP_004384746.1| - 1.1e-35 121.3 17.9 9.7e-09 35.0 0.3 7.8 1 1 8 9 9 9 8 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330508318|ref|YP_004384746.1| - 3.8e-26 90.7 9.9 0.0016 18.2 0.0 8.1 3 3 4 8 8 8 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330508318|ref|YP_004384746.1| - 2.4e-24 85.4 18.9 2.5e-06 27.7 0.0 8.7 2 1 8 11 11 11 8 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330508318|ref|YP_004384746.1| - 7.4e-21 73.1 8.5 0.026 14.9 0.0 9.8 10 0 0 10 10 9 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|330508318|ref|YP_004384746.1| - 5.2e-19 68.1 6.5 6.5e-06 26.1 0.1 5.9 2 2 5 7 7 7 5 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.12 gi|330508318|ref|YP_004384746.1| - 1e-14 55.0 6.3 0.00015 22.1 0.1 4.9 3 1 2 5 5 5 3 Bacterial transcriptional activator domain TPR_7 PF13176.1 gi|330508318|ref|YP_004384746.1| - 7.3e-12 44.1 12.6 0.0032 17.1 0.4 8.6 9 0 0 9 9 9 2 Tetratricopeptide repeat FAT PF02259.18 gi|330508318|ref|YP_004384746.1| - 1.3e-09 37.5 2.9 0.14 11.1 0.2 5.6 2 2 3 5 5 5 2 FAT domain DUF3856 PF12968.2 gi|330508318|ref|YP_004384746.1| - 8e-09 35.4 14.3 1 9.1 0.0 8.5 1 1 9 10 10 10 3 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|330508318|ref|YP_004384746.1| - 2.1e-08 33.4 2.1 0.13 11.0 0.0 4.9 1 1 5 6 6 6 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|330508318|ref|YP_004384746.1| - 2.5e-08 33.6 1.5 0.58 10.0 0.0 6.2 7 0 0 7 7 7 1 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|330508318|ref|YP_004384746.1| - 0.00065 19.5 24.2 0.0083 16.0 0.5 7.5 8 0 0 8 8 8 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|330508318|ref|YP_004384746.1| - 0.0026 17.8 6.5 4.2 7.5 0.1 5.1 2 1 3 6 6 6 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|330508318|ref|YP_004384746.1| - 0.018 14.0 16.9 1.5 7.8 0.1 4.8 2 2 2 5 5 5 0 Tetratricopeptide repeat PPR PF01535.15 gi|330508318|ref|YP_004384746.1| - 0.051 13.5 0.2 19 5.5 0.0 4.2 4 0 0 4 4 3 0 PPR repeat DUF3863 PF12979.2 gi|330508318|ref|YP_004384746.1| - 0.059 11.9 0.0 0.088 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3863) MIT PF04212.13 gi|330508318|ref|YP_004384746.1| - 0.06 13.2 14.6 18 5.3 0.1 7.5 6 2 1 7 7 7 0 MIT (microtubule interacting and transport) domain NikR_C PF08753.6 gi|330508319|ref|YP_004384747.1| - 5e-31 106.4 1.2 6.6e-31 106.0 0.8 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|330508319|ref|YP_004384747.1| - 4e-07 29.6 0.0 9.6e-07 28.4 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Methyltransf_18 PF12847.2 gi|330508320|ref|YP_004384748.1| - 1.3e-07 32.1 0.0 8.9e-07 29.4 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330508320|ref|YP_004384748.1| - 2e-05 24.2 0.0 3.6e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330508320|ref|YP_004384748.1| - 0.00087 19.0 0.0 0.0012 18.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330508320|ref|YP_004384748.1| - 0.0015 18.5 0.0 0.0041 17.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330508320|ref|YP_004384748.1| - 0.003 17.9 0.0 0.0079 16.6 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330508320|ref|YP_004384748.1| - 0.0074 15.6 0.0 0.018 14.4 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Met_10 PF02475.11 gi|330508320|ref|YP_004384748.1| - 0.01 15.4 0.0 0.02 14.4 0.0 1.5 2 0 0 2 2 2 0 Met-10+ like-protein GidB PF02527.10 gi|330508320|ref|YP_004384748.1| - 0.011 14.9 0.0 0.018 14.1 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.7 gi|330508320|ref|YP_004384748.1| - 0.012 16.1 0.0 0.036 14.5 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330508320|ref|YP_004384748.1| - 0.028 13.5 0.0 0.07 12.2 0.0 1.6 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|330508320|ref|YP_004384748.1| - 0.039 12.9 0.0 0.057 12.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|330508320|ref|YP_004384748.1| - 0.075 13.4 0.0 0.27 11.6 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain DUF4198 PF10670.4 gi|330508321|ref|YP_004384749.1| - 3.8e-09 36.8 1.4 5.3e-09 36.3 1.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) DUF4198 PF10670.4 gi|330508322|ref|YP_004384750.1| - 0.0017 18.3 0.0 0.0018 18.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.1 gi|330508322|ref|YP_004384750.1| - 0.0025 17.8 0.0 0.0035 17.3 0.0 1.1 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|330508322|ref|YP_004384750.1| - 0.021 14.8 0.0 0.024 14.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) MG1 PF11974.3 gi|330508322|ref|YP_004384750.1| - 0.073 13.6 0.0 0.083 13.4 0.0 1.1 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain DUF4198 PF10670.4 gi|330508323|ref|YP_004384751.1| - 4.2e-14 53.0 0.0 8.4e-14 52.0 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) Peptidase_M15_4 PF13539.1 gi|330508323|ref|YP_004384751.1| - 0.016 15.6 0.0 0.036 14.5 0.0 1.6 1 1 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase DUF4198 PF10670.4 gi|330508324|ref|YP_004384752.1| - 3e-19 69.9 0.0 6.3e-19 68.8 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) CbiM PF01891.11 gi|330508325|ref|YP_004384753.1| - 2.8e-48 164.2 22.2 3.2e-48 164.0 15.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region YfhO PF09586.5 gi|330508325|ref|YP_004384753.1| - 4.4 5.1 5.9 4.7 5.0 4.1 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF4198 PF10670.4 gi|330508326|ref|YP_004384754.1| - 2.6e-06 27.5 0.1 3.3e-06 27.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.1 gi|330508326|ref|YP_004384754.1| - 6.8e-05 22.8 0.1 8.3e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain MG1 PF11974.3 gi|330508326|ref|YP_004384754.1| - 0.0011 19.4 0.0 0.0014 19.0 0.0 1.2 1 0 0 1 1 1 1 Alpha-2-macroglobulin MG1 domain DUF1416 PF07210.7 gi|330508326|ref|YP_004384754.1| - 0.0046 16.5 0.1 0.0058 16.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1416) Big_1 PF02369.11 gi|330508326|ref|YP_004384754.1| - 0.01 15.7 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) DUF4480 PF13715.1 gi|330508326|ref|YP_004384754.1| - 0.069 13.2 0.0 0.078 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) DUF824 PF05688.6 gi|330508326|ref|YP_004384754.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) DUF290 PF01060.18 gi|330508326|ref|YP_004384754.1| - 0.16 12.0 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Transthyretin-like family CarboxypepD_reg PF13620.1 gi|330508327|ref|YP_004384755.1| - 7.9e-05 22.6 0.1 0.0001 22.2 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain MG1 PF11974.3 gi|330508327|ref|YP_004384755.1| - 0.041 14.4 0.0 0.056 14.0 0.0 1.2 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain DUF4480 PF13715.1 gi|330508327|ref|YP_004384755.1| - 0.044 13.8 0.0 0.14 12.2 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4480) CbiQ PF02361.11 gi|330508328|ref|YP_004384756.1| - 1.3e-31 109.9 10.3 1.7e-31 109.5 7.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|330508329|ref|YP_004384757.1| - 3e-31 108.5 0.0 4.5e-31 107.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330508329|ref|YP_004384757.1| - 6.3e-17 62.4 0.1 6.3e-11 42.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330508329|ref|YP_004384757.1| - 5.9e-09 35.4 0.0 1.1e-08 34.5 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|330508329|ref|YP_004384757.1| - 2.7e-05 23.7 0.0 0.0018 17.7 0.0 2.1 1 1 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|330508329|ref|YP_004384757.1| - 0.00012 21.3 0.0 0.088 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|330508329|ref|YP_004384757.1| - 0.00013 21.4 0.0 0.00025 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|330508329|ref|YP_004384757.1| - 0.0012 19.1 0.0 0.0016 18.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330508329|ref|YP_004384757.1| - 0.0017 18.3 0.6 0.0064 16.5 0.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.1 gi|330508329|ref|YP_004384757.1| - 0.0022 16.5 0.0 0.36 9.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|330508329|ref|YP_004384757.1| - 0.0024 17.0 0.0 0.0032 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|330508329|ref|YP_004384757.1| - 0.0054 16.1 0.0 0.83 9.0 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|330508329|ref|YP_004384757.1| - 0.0054 16.6 0.0 0.025 14.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|330508329|ref|YP_004384757.1| - 0.0063 15.9 0.1 0.016 14.6 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|330508329|ref|YP_004384757.1| - 0.0069 16.5 0.1 0.093 12.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|330508329|ref|YP_004384757.1| - 0.021 14.7 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF1845 PF08900.6 gi|330508329|ref|YP_004384757.1| - 0.09 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1845) AAA_30 PF13604.1 gi|330508329|ref|YP_004384757.1| - 0.11 12.0 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DivIVA PF05103.8 gi|330508330|ref|YP_004384758.1| - 3.1 7.8 9.3 3.2 7.8 5.0 2.2 1 1 1 2 2 2 0 DivIVA protein DUF4198 PF10670.4 gi|330508331|ref|YP_004384759.1| - 2.9e-14 53.6 0.0 7.3e-14 52.2 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) RNase_HII PF01351.13 gi|330508333|ref|YP_004384761.1| - 1.1e-42 145.9 0.2 1.3e-42 145.7 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII Aminotran_5 PF00266.14 gi|330508334|ref|YP_004384762.1| - 3.5e-40 137.8 0.0 4.3e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|330508334|ref|YP_004384762.1| - 0.0026 16.8 0.1 0.01 14.8 0.0 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family YjeF_N PF03853.10 gi|330508334|ref|YP_004384762.1| - 0.012 15.2 0.4 0.9 9.1 0.0 2.6 3 0 0 3 3 3 0 YjeF-related protein N-terminus DeoC PF01791.4 gi|330508334|ref|YP_004384762.1| - 0.039 13.2 0.3 7.2 5.8 0.0 2.3 2 0 0 2 2 2 0 DeoC/LacD family aldolase PALP PF00291.20 gi|330508335|ref|YP_004384763.1| - 2.3e-34 118.9 0.0 2.9e-34 118.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NAD_kinase PF01513.16 gi|330508336|ref|YP_004384764.1| - 2.2e-46 157.9 0.0 2.7e-46 157.6 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DeoRC PF00455.17 gi|330508336|ref|YP_004384764.1| - 0.0012 18.5 0.0 0.0022 17.6 0.0 1.5 1 0 0 1 1 1 1 DeoR C terminal sensor domain DAGK_cat PF00781.19 gi|330508336|ref|YP_004384764.1| - 0.0053 16.1 0.0 0.013 14.8 0.0 1.7 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain ATP-synt_D PF01813.12 gi|330508337|ref|YP_004384765.1| - 2.6e-59 200.0 10.3 3.2e-59 199.7 7.2 1.1 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.20 gi|330508338|ref|YP_004384766.1| - 2.7e-55 187.1 0.0 3.6e-55 186.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|330508338|ref|YP_004384766.1| - 2.6e-17 63.3 0.1 4.1e-17 62.6 0.1 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|330508338|ref|YP_004384766.1| - 7.2e-11 42.1 0.6 7.2e-11 42.1 0.4 1.9 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|330508338|ref|YP_004384766.1| - 0.0054 16.6 0.4 0.012 15.5 0.3 1.6 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|330508339|ref|YP_004384767.1| - 3.4e-93 311.0 0.0 4.5e-93 310.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|330508339|ref|YP_004384767.1| - 8e-16 58.5 0.1 1.8e-15 57.4 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|330508339|ref|YP_004384767.1| - 2.9e-09 36.9 0.8 8.6e-09 35.4 0.5 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.1 gi|330508339|ref|YP_004384767.1| - 0.019 14.7 0.7 0.062 13.0 0.0 2.0 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.17 gi|330508339|ref|YP_004384767.1| - 0.022 14.7 0.2 0.11 12.5 0.1 2.1 2 0 0 2 2 2 0 Peptidase family M23 ATP-synt_F PF01990.12 gi|330508340|ref|YP_004384768.1| - 2.4e-15 56.7 0.1 2.7e-15 56.5 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF3865 PF12981.2 gi|330508340|ref|YP_004384768.1| - 0.077 12.7 0.0 0.092 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3865) vATP-synt_AC39 PF01992.11 gi|330508341|ref|YP_004384769.1| - 3.3e-80 269.7 0.1 3.7e-80 269.5 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.13 gi|330508342|ref|YP_004384770.1| - 8.4e-21 74.1 15.3 1.4e-19 70.2 10.6 1.9 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF2465 PF10239.4 gi|330508342|ref|YP_004384770.1| - 0.031 13.4 2.4 0.04 13.1 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2465) TMCO5 PF14992.1 gi|330508342|ref|YP_004384770.1| - 0.047 12.8 4.5 0.061 12.4 3.1 1.2 1 0 0 1 1 1 0 TMCO5 family MtlR PF05068.7 gi|330508342|ref|YP_004384770.1| - 0.057 12.8 0.1 0.089 12.2 0.1 1.3 1 0 0 1 1 1 0 Mannitol repressor PET PF06297.9 gi|330508342|ref|YP_004384770.1| - 0.099 12.3 0.1 0.24 11.0 0.1 1.6 1 0 0 1 1 1 0 PET Domain ATP-synt_B PF00430.13 gi|330508342|ref|YP_004384770.1| - 0.15 11.8 10.3 0.24 11.2 7.0 1.5 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|330508342|ref|YP_004384770.1| - 0.32 10.1 15.0 0.62 9.2 10.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) HrpE PF06188.7 gi|330508342|ref|YP_004384770.1| - 1.1 8.9 6.5 2.5 7.8 4.5 1.5 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Atg14 PF10186.4 gi|330508342|ref|YP_004384770.1| - 7.7 5.3 7.7 9.8 5.0 5.3 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 ATP-synt_C PF00137.16 gi|330508343|ref|YP_004384771.1| - 7.9e-15 54.5 16.6 7.9e-15 54.5 11.5 1.7 1 1 1 2 2 2 1 ATP synthase subunit C SseC PF04888.7 gi|330508343|ref|YP_004384771.1| - 0.39 10.0 7.5 0.37 10.0 5.2 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family V_ATPase_I PF01496.14 gi|330508344|ref|YP_004384772.1| - 2.1e-89 300.3 16.0 6.9e-59 199.4 0.2 3.0 2 1 1 3 3 3 3 V-type ATPase 116kDa subunit family Reo_sigmaC PF04582.7 gi|330508344|ref|YP_004384772.1| - 0.13 11.3 0.2 9.8 5.2 0.0 2.1 2 0 0 2 2 2 0 Reovirus sigma C capsid protein FliD_C PF07195.7 gi|330508344|ref|YP_004384772.1| - 0.2 10.9 0.1 9.9 5.3 0.0 2.2 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus V-ATPase_G PF03179.10 gi|330508345|ref|YP_004384773.1| - 0.00023 21.4 10.5 0.00027 21.2 7.3 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|330508345|ref|YP_004384773.1| - 0.00026 20.7 16.4 0.00057 19.7 11.3 1.5 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) IL4 PF00727.13 gi|330508345|ref|YP_004384773.1| - 0.039 13.8 0.1 0.045 13.6 0.0 1.2 1 0 0 1 1 1 0 Interleukin 4 BMFP PF04380.8 gi|330508345|ref|YP_004384773.1| - 0.082 13.0 4.9 0.14 12.3 0.8 2.1 1 1 1 2 2 2 0 Membrane fusogenic activity DUF2937 PF11157.3 gi|330508345|ref|YP_004384773.1| - 0.26 10.6 2.3 0.32 10.3 1.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) UPF0556 PF10572.4 gi|330508345|ref|YP_004384773.1| - 0.51 9.5 3.6 0.29 10.2 0.6 1.7 1 1 1 2 2 2 0 Uncharacterised protein family UPF0556 FBPase PF00316.15 gi|330508346|ref|YP_004384774.1| - 6.9e-83 278.1 0.0 8.1e-83 277.9 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase F_bP_aldolase PF01116.15 gi|330508347|ref|YP_004384775.1| - 1.8e-14 53.5 0.0 2.5e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II Tagatose_6_P_K PF08013.6 gi|330508347|ref|YP_004384775.1| - 7.9e-08 31.1 0.0 1.1e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Tagatose 6 phosphate kinase FBPase_3 PF01950.11 gi|330508348|ref|YP_004384776.1| - 9.4e-182 603.9 0.0 1.1e-181 603.7 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase TerB PF05099.8 gi|330508350|ref|YP_004384778.1| - 2.3e-16 59.8 0.4 3.4e-16 59.2 0.3 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TerB DUF533 PF04391.7 gi|330508350|ref|YP_004384778.1| - 5.4e-08 32.4 3.2 0.00013 21.3 0.2 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF533) DUF2600 PF10776.4 gi|330508350|ref|YP_004384778.1| - 0.0022 16.8 0.1 0.0035 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2600) TPR_11 PF13414.1 gi|330508351|ref|YP_004384779.1| - 2.4e-163 530.0 59.6 2.9e-19 68.4 1.0 8.2 1 1 10 11 11 11 11 TPR repeat TPR_1 PF00515.23 gi|330508351|ref|YP_004384779.1| - 4.4e-133 428.0 28.6 1.6e-11 43.3 0.0 12.2 12 0 0 12 12 12 12 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330508351|ref|YP_004384779.1| - 1e-109 349.8 29.6 1.7e-09 36.8 0.1 12.4 12 1 0 12 12 12 11 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330508351|ref|YP_004384779.1| - 9.1e-89 291.4 35.1 3e-11 43.0 0.3 8.0 1 1 10 11 11 11 11 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330508351|ref|YP_004384779.1| - 2.8e-85 273.5 22.7 2.2e-06 27.3 0.1 12.1 12 0 0 12 12 12 11 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330508351|ref|YP_004384779.1| - 1.3e-81 267.8 40.8 1.2e-15 57.6 1.4 6.9 3 1 2 7 7 7 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330508351|ref|YP_004384779.1| - 4e-75 242.1 21.5 9.1e-06 25.0 0.1 12.0 11 1 1 12 12 12 11 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330508351|ref|YP_004384779.1| - 2.8e-61 198.3 35.5 1.1e-06 28.7 0.7 11.1 1 1 10 11 11 11 10 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330508351|ref|YP_004384779.1| - 1.7e-52 171.0 23.1 4.2e-05 23.0 0.0 11.3 11 0 0 11 11 11 9 Tetratricopeptide repeat Apc3 PF12895.2 gi|330508351|ref|YP_004384779.1| - 2.3e-48 162.2 25.3 2.1e-08 34.2 0.0 5.7 1 1 6 8 8 8 8 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|330508351|ref|YP_004384779.1| - 2.1e-45 152.8 82.9 2.1e-08 34.4 1.6 8.3 2 1 8 10 10 10 10 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330508351|ref|YP_004384779.1| - 1.4e-40 134.9 15.2 0.025 14.9 0.1 11.6 12 0 0 12 12 11 11 Tetratricopeptide repeat MIT PF04212.13 gi|330508351|ref|YP_004384779.1| - 1.1e-23 82.8 54.1 0.046 13.6 0.7 11.3 10 1 1 11 11 11 9 MIT (microtubule interacting and transport) domain TPR_9 PF13371.1 gi|330508351|ref|YP_004384779.1| - 6e-23 80.4 21.5 6.9e-05 22.6 0.4 6.7 1 1 10 11 11 11 10 Tetratricopeptide repeat TPR_3 PF07720.7 gi|330508351|ref|YP_004384779.1| - 2.5e-21 75.0 31.3 0.025 14.3 0.0 11.2 11 0 0 11 11 11 6 Tetratricopeptide repeat TPR_4 PF07721.9 gi|330508351|ref|YP_004384779.1| - 2.8e-16 58.2 5.0 11 6.8 0.0 10.1 10 0 0 10 10 9 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330508351|ref|YP_004384779.1| - 6e-16 57.7 25.8 0.37 10.8 0.0 11.2 12 0 0 12 12 11 4 Tetratricopeptide repeat NARP1 PF12569.3 gi|330508351|ref|YP_004384779.1| - 6.2e-15 54.9 18.7 0.0085 14.8 0.1 5.6 3 2 3 6 6 6 6 NMDA receptor-regulated protein 1 PPR PF01535.15 gi|330508351|ref|YP_004384779.1| - 4e-14 51.5 4.7 21 5.3 0.0 10.6 11 0 0 11 11 11 0 PPR repeat Lambda_Kil PF06301.6 gi|330508351|ref|YP_004384779.1| - 3.3e-13 48.8 7.8 15 5.1 0.0 10.7 11 0 0 11 11 11 0 Bacteriophage lambda Kil protein BTAD PF03704.12 gi|330508351|ref|YP_004384779.1| - 7.3e-13 49.0 7.4 0.0058 16.9 0.2 5.5 3 2 2 6 6 6 4 Bacterial transcriptional activator domain TPR_15 PF13429.1 gi|330508351|ref|YP_004384779.1| - 1.3e-12 47.3 13.3 0.0028 16.7 0.2 8.2 1 1 6 8 8 8 3 Tetratricopeptide repeat Apc5 PF12862.2 gi|330508351|ref|YP_004384779.1| - 3.2e-12 46.1 8.5 26 4.7 0.0 10.6 9 2 2 11 11 11 0 Anaphase-promoting complex subunit 5 DUF3856 PF12968.2 gi|330508351|ref|YP_004384779.1| - 3.2e-08 33.5 11.5 15 5.4 0.0 9.5 4 3 3 8 8 8 0 Domain of Unknown Function (DUF3856) Type_III_YscG PF09477.5 gi|330508351|ref|YP_004384779.1| - 6.8e-07 29.3 3.1 15 5.6 0.0 6.9 3 3 2 7 7 7 0 Bacterial type II secretion system chaperone protein (type_III_yscG) TPR_21 PF09976.4 gi|330508351|ref|YP_004384779.1| - 7.3e-07 29.2 47.2 0.042 13.8 1.9 7.0 4 2 4 8 8 8 3 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|330508351|ref|YP_004384779.1| - 8.1e-07 28.5 1.2 0.22 10.6 0.0 4.1 2 1 3 5 5 5 2 Coatomer epsilon subunit FAT PF02259.18 gi|330508351|ref|YP_004384779.1| - 4.6e-06 25.8 15.3 2.5 7.0 0.1 8.0 1 1 6 7 7 7 1 FAT domain 4HB_MCP_1 PF12729.2 gi|330508351|ref|YP_004384779.1| - 1.3e-05 24.6 30.8 7.4 5.8 0.0 9.7 8 3 2 10 10 9 0 Four helix bundle sensory module for signal transduction TPR_20 PF14561.1 gi|330508351|ref|YP_004384779.1| - 0.00011 22.2 22.8 1.7 8.7 0.5 7.0 4 2 3 8 8 8 2 Tetratricopeptide repeat RPN7 PF10602.4 gi|330508351|ref|YP_004384779.1| - 0.00024 20.5 14.7 1.1 8.5 0.2 8.0 3 2 5 8 8 8 1 26S proteasome subunit RPN7 DUF627 PF04781.7 gi|330508351|ref|YP_004384779.1| - 0.00035 20.1 0.0 2.7 7.6 0.0 3.9 5 1 0 5 5 3 2 Protein of unknown function (DUF627) PPR_2 PF13041.1 gi|330508351|ref|YP_004384779.1| - 0.00066 19.5 7.0 1.7e+02 2.3 0.0 8.2 9 0 0 9 9 9 0 PPR repeat family Sda PF08970.5 gi|330508351|ref|YP_004384779.1| - 0.0031 16.9 16.4 1.5e+02 1.9 0.0 10.2 12 0 0 12 12 12 0 Sporulation inhibitor A Fis1_TPR_C PF14853.1 gi|330508351|ref|YP_004384779.1| - 0.02 14.7 11.1 23 4.9 0.0 7.4 9 0 0 9 9 7 0 Fis1 C-terminal tetratricopeptide repeat DXP_reductoisom PF02670.11 gi|330508351|ref|YP_004384779.1| - 0.024 15.1 0.1 48 4.4 0.0 3.8 1 1 2 4 4 4 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DUF3366 PF11846.3 gi|330508351|ref|YP_004384779.1| - 0.087 12.6 8.7 4.4 7.1 0.0 4.9 3 2 2 5 5 5 0 Domain of unknown function (DUF3366) DUF2799 PF10973.3 gi|330508351|ref|YP_004384779.1| - 0.14 12.2 16.6 42 4.2 0.0 7.8 5 3 3 8 8 8 0 Protein of unknown function (DUF2799) AP2 PF00847.15 gi|330508351|ref|YP_004384779.1| - 0.15 12.2 31.2 13 5.9 0.0 10.0 11 0 0 11 11 11 0 AP2 domain FSH1 PF03959.8 gi|330508351|ref|YP_004384779.1| - 0.17 11.3 0.2 16 4.8 0.0 2.6 2 0 0 2 2 2 0 Serine hydrolase (FSH1) PHP PF02811.14 gi|330508351|ref|YP_004384779.1| - 5.5 6.7 9.4 74 3.0 0.0 5.3 2 2 2 4 4 4 0 PHP domain Allexi_40kDa PF05549.6 gi|330508352|ref|YP_004384780.1| - 0.0007 18.9 0.3 0.00089 18.6 0.2 1.1 1 0 0 1 1 1 1 Allexivirus 40kDa protein DUF4446 PF14584.1 gi|330508352|ref|YP_004384780.1| - 0.0018 18.1 2.7 0.0031 17.3 0.6 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF4446) Atg14 PF10186.4 gi|330508352|ref|YP_004384780.1| - 0.0018 17.2 3.9 0.0025 16.8 2.7 1.3 1 1 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|330508352|ref|YP_004384780.1| - 0.0059 16.2 0.3 0.0075 15.8 0.2 1.2 1 0 0 1 1 1 1 IncA protein TarH PF02203.10 gi|330508352|ref|YP_004384780.1| - 0.0077 16.0 0.7 0.013 15.3 0.4 1.5 1 1 0 1 1 1 1 Tar ligand binding domain homologue AAA_13 PF13166.1 gi|330508352|ref|YP_004384780.1| - 0.015 13.8 8.3 0.027 12.9 5.8 1.4 1 1 0 1 1 1 0 AAA domain APG6 PF04111.7 gi|330508352|ref|YP_004384780.1| - 0.016 14.2 4.4 0.021 13.9 3.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 SlyX PF04102.7 gi|330508352|ref|YP_004384780.1| - 0.023 15.0 3.2 0.041 14.2 1.3 2.0 2 0 0 2 2 2 0 SlyX ATG16 PF08614.6 gi|330508352|ref|YP_004384780.1| - 0.041 13.7 8.1 0.045 13.5 3.5 2.0 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) SQS_PSY PF00494.14 gi|330508352|ref|YP_004384780.1| - 0.073 12.3 0.1 0.091 12.0 0.1 1.1 1 0 0 1 1 1 0 Squalene/phytoene synthase LemA PF04011.7 gi|330508352|ref|YP_004384780.1| - 0.074 12.1 5.3 1.5 7.8 0.4 3.1 1 1 1 3 3 3 0 LemA family Filament PF00038.16 gi|330508352|ref|YP_004384780.1| - 0.1 12.0 8.8 0.11 11.8 2.8 2.0 1 1 1 2 2 2 0 Intermediate filament protein Toxin_43 PF15604.1 gi|330508352|ref|YP_004384780.1| - 0.14 12.1 2.7 0.13 12.2 0.4 1.9 1 1 1 2 2 2 0 Putative toxin 43 FliD_N PF02465.13 gi|330508352|ref|YP_004384780.1| - 0.29 11.5 6.9 1.5 9.2 0.1 3.1 1 1 3 4 4 4 0 Flagellar hook-associated protein 2 N-terminus WEMBL PF05701.6 gi|330508352|ref|YP_004384780.1| - 0.3 9.5 5.2 0.68 8.3 3.6 1.5 1 1 0 1 1 1 0 Weak chloroplast movement under blue light DUF4337 PF14235.1 gi|330508352|ref|YP_004384780.1| - 0.39 10.5 7.5 2.2 8.0 3.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) DUF4407 PF14362.1 gi|330508352|ref|YP_004384780.1| - 1.1 8.1 4.2 4.4 6.1 2.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Vfa1 PF08432.5 gi|330508352|ref|YP_004384780.1| - 1.2 9.1 6.2 2.1 8.3 4.3 1.3 1 1 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 DivIC PF04977.10 gi|330508352|ref|YP_004384780.1| - 1.3 8.5 8.7 0.24 10.8 2.8 2.3 2 1 0 2 2 2 0 Septum formation initiator Kinetocho_Slk19 PF12709.2 gi|330508352|ref|YP_004384780.1| - 2.1 8.4 6.7 0.79 9.8 0.9 2.5 1 1 0 2 2 2 0 Central kinetochore-associated ABC_tran PF00005.22 gi|330508353|ref|YP_004384781.1| - 3e-32 111.7 0.0 4.4e-32 111.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|330508353|ref|YP_004384781.1| - 6.8e-09 35.2 0.1 2.1e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|330508353|ref|YP_004384781.1| - 1.4e-07 31.8 0.1 0.0052 16.7 0.4 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|330508353|ref|YP_004384781.1| - 1.7e-06 28.1 0.1 4.4e-06 26.7 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|330508353|ref|YP_004384781.1| - 0.00012 21.4 0.1 0.00025 20.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|330508353|ref|YP_004384781.1| - 0.00037 20.6 0.5 0.0039 17.3 0.3 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|330508353|ref|YP_004384781.1| - 0.00056 19.1 0.1 0.0012 18.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|330508353|ref|YP_004384781.1| - 0.0027 17.2 0.9 0.0095 15.4 0.1 1.9 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|330508353|ref|YP_004384781.1| - 0.003 18.3 0.6 0.0066 17.2 0.3 1.8 2 1 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|330508353|ref|YP_004384781.1| - 0.0041 16.5 0.1 0.032 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|330508353|ref|YP_004384781.1| - 0.0042 15.6 0.0 0.029 12.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|330508353|ref|YP_004384781.1| - 0.007 16.0 0.1 0.057 13.1 0.1 2.0 1 1 0 1 1 1 1 Archaeal ATPase NTPase_1 PF03266.10 gi|330508353|ref|YP_004384781.1| - 0.01 15.5 0.2 0.42 10.2 0.0 2.2 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.1 gi|330508353|ref|YP_004384781.1| - 0.013 15.4 0.0 0.13 12.1 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|330508353|ref|YP_004384781.1| - 0.015 15.6 0.1 0.034 14.4 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|330508353|ref|YP_004384781.1| - 0.028 14.7 1.9 0.098 12.9 1.3 2.2 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|330508353|ref|YP_004384781.1| - 0.034 13.5 0.0 0.62 9.4 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA_33 PF13671.1 gi|330508353|ref|YP_004384781.1| - 0.037 13.8 0.1 0.16 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|330508353|ref|YP_004384781.1| - 0.039 13.7 0.6 0.3 10.8 0.0 2.5 3 0 0 3 3 3 0 Part of AAA domain AAA_15 PF13175.1 gi|330508353|ref|YP_004384781.1| - 0.051 12.6 0.0 2.9 6.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|330508353|ref|YP_004384781.1| - 0.059 13.0 0.1 0.28 10.8 0.0 2.0 2 0 0 2 2 2 0 NACHT domain PIN_4 PF13638.1 gi|330508353|ref|YP_004384781.1| - 0.063 13.3 0.0 0.093 12.8 0.0 1.3 1 0 0 1 1 1 0 PIN domain KaiC PF06745.8 gi|330508353|ref|YP_004384781.1| - 0.084 11.9 0.3 5.8 5.9 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_28 PF13521.1 gi|330508353|ref|YP_004384781.1| - 0.085 12.8 0.1 0.23 11.4 0.0 1.8 2 0 0 2 2 1 0 AAA domain cobW PF02492.14 gi|330508353|ref|YP_004384781.1| - 0.087 12.2 0.1 0.22 10.9 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|330508353|ref|YP_004384781.1| - 0.089 12.6 0.0 0.19 11.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain MMR_HSR1 PF01926.18 gi|330508353|ref|YP_004384781.1| - 0.11 12.4 1.2 0.32 10.9 0.8 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|330508353|ref|YP_004384781.1| - 0.13 11.7 0.0 0.26 10.8 0.0 1.7 1 1 1 2 2 2 0 AAA domain MobB PF03205.9 gi|330508353|ref|YP_004384781.1| - 0.15 11.7 0.0 0.37 10.4 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FtsX PF02687.16 gi|330508354|ref|YP_004384782.1| - 1.4e-24 86.1 7.8 1.4e-24 86.1 5.4 2.1 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|330508354|ref|YP_004384782.1| - 1.8e-22 80.0 0.2 3.6e-22 79.1 0.0 1.5 2 0 0 2 2 2 1 MacB-like periplasmic core domain Lung_7-TM_R PF06814.8 gi|330508354|ref|YP_004384782.1| - 0.014 14.3 2.6 0.021 13.7 0.6 1.9 2 0 0 2 2 2 0 Lung seven transmembrane receptor DUF2534 PF10749.4 gi|330508354|ref|YP_004384782.1| - 1.2 9.0 6.8 3.2 7.7 0.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2534) MacB_PCD PF12704.2 gi|330508355|ref|YP_004384783.1| - 5.9e-22 78.3 2.1 5.9e-22 78.3 1.5 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|330508355|ref|YP_004384783.1| - 1.6e-19 69.8 11.4 1.6e-19 69.8 7.9 2.2 2 0 0 2 2 2 1 FtsX-like permease family ABC2_membrane_3 PF12698.2 gi|330508355|ref|YP_004384783.1| - 0.051 12.6 8.1 0.0095 15.0 3.1 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein Claudin_3 PF06653.6 gi|330508355|ref|YP_004384783.1| - 3.1 7.5 7.0 0.9 9.2 1.5 2.5 3 1 0 3 3 3 0 Tight junction protein, Claudin-like HTH_10 PF04967.7 gi|330508358|ref|YP_004384786.1| - 1.2e-19 69.5 0.1 2e-19 68.9 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|330508358|ref|YP_004384786.1| - 0.032 13.8 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_CodY PF08222.6 gi|330508358|ref|YP_004384786.1| - 0.045 13.1 0.1 0.092 12.0 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_3 PF01381.17 gi|330508360|ref|YP_004384788.1| - 7.1e-16 57.7 0.2 8.1e-16 57.6 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|330508360|ref|YP_004384788.1| - 2.5e-10 40.2 0.1 2.7e-10 40.1 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|330508360|ref|YP_004384788.1| - 3.8e-10 39.7 0.0 4.2e-10 39.6 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|330508360|ref|YP_004384788.1| - 2.5e-08 33.9 0.0 2.9e-08 33.7 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|330508360|ref|YP_004384788.1| - 0.0011 18.7 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_25 PF13413.1 gi|330508360|ref|YP_004384788.1| - 0.0013 18.3 0.1 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|330508360|ref|YP_004384788.1| - 0.0019 17.4 0.3 0.0028 16.9 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|330508360|ref|YP_004384788.1| - 0.0029 17.1 0.4 0.0045 16.5 0.1 1.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.1 gi|330508360|ref|YP_004384788.1| - 0.0058 16.4 0.0 0.0095 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF1841 PF08897.6 gi|330508360|ref|YP_004384788.1| - 0.021 14.6 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1841) HTH_38 PF13936.1 gi|330508360|ref|YP_004384788.1| - 0.078 12.5 0.4 0.13 11.8 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.18 gi|330508360|ref|YP_004384788.1| - 0.086 12.4 0.0 0.18 11.3 0.0 1.6 1 1 0 1 1 1 0 MerR family regulatory protein TerC PF03741.11 gi|330508361|ref|YP_004384789.1| - 0.0005 19.5 5.2 0.00062 19.2 3.6 1.0 1 0 0 1 1 1 1 Integral membrane protein TerC family DUF4401 PF14351.1 gi|330508361|ref|YP_004384789.1| - 0.0014 17.6 2.9 0.0019 17.2 2.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4401) MFS_1 PF07690.11 gi|330508361|ref|YP_004384789.1| - 0.0043 15.8 10.0 0.01 14.5 6.9 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily DUF1673 PF07895.6 gi|330508361|ref|YP_004384789.1| - 0.016 14.7 0.3 0.019 14.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF716 PF04819.7 gi|330508361|ref|YP_004384789.1| - 0.07 12.5 0.3 0.14 11.6 0.0 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF716) DUF4010 PF13194.1 gi|330508361|ref|YP_004384789.1| - 0.074 12.3 6.3 0.91 8.7 4.4 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4010) DUF3318 PF11780.3 gi|330508361|ref|YP_004384789.1| - 0.086 12.4 0.8 0.12 11.9 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3318) DUF533 PF04391.7 gi|330508361|ref|YP_004384789.1| - 0.087 12.1 0.1 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF533) ATP_synt_I PF03899.10 gi|330508361|ref|YP_004384789.1| - 0.3 11.2 8.7 0.076 13.1 3.5 1.8 1 1 1 2 2 2 0 ATP synthase I chain DUF2207 PF09972.4 gi|330508361|ref|YP_004384789.1| - 0.31 9.5 4.1 0.25 9.8 1.9 1.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Ni_hydr_CYTB PF01292.15 gi|330508361|ref|YP_004384789.1| - 0.37 10.1 4.5 1.4 8.2 3.2 1.7 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 Tetraspannin PF00335.15 gi|330508361|ref|YP_004384789.1| - 1 8.5 8.8 2.5 7.3 6.1 1.6 1 1 0 1 1 1 0 Tetraspanin family DUF4131 PF13567.1 gi|330508361|ref|YP_004384789.1| - 1.8 7.9 7.7 1.8 7.9 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) SdpI PF13630.1 gi|330508361|ref|YP_004384789.1| - 3.1 7.5 9.1 0.33 10.6 1.1 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family Tmemb_14 PF03647.8 gi|330508361|ref|YP_004384789.1| - 3.2 8.1 9.9 0.38 11.1 1.6 2.3 1 1 1 2 2 2 0 Transmembrane proteins 14C DUF805 PF05656.9 gi|330508361|ref|YP_004384789.1| - 9.5 6.0 11.0 2.2 8.1 3.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF805) HxlR PF01638.12 gi|330508362|ref|YP_004384790.1| - 1.7e-35 120.4 0.0 2.4e-35 120.0 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|330508362|ref|YP_004384790.1| - 0.00084 19.0 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|330508362|ref|YP_004384790.1| - 0.0082 15.8 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|330508362|ref|YP_004384790.1| - 0.01 15.8 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Flavin_Reduct PF01613.13 gi|330508363|ref|YP_004384791.1| - 2.3e-22 79.4 0.0 2.7e-22 79.3 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Nitroreductase PF00881.19 gi|330508364|ref|YP_004384792.1| - 9.9e-30 103.5 0.0 1.3e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4_6 PF12837.2 gi|330508364|ref|YP_004384792.1| - 4.3e-09 35.8 11.6 0.00013 21.6 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330508364|ref|YP_004384792.1| - 5e-09 36.4 20.1 1.1e-06 28.8 7.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330508364|ref|YP_004384792.1| - 6.1e-09 35.1 12.6 6.3e-05 22.4 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330508364|ref|YP_004384792.1| - 8.8e-08 32.7 3.1 0.0014 19.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|330508364|ref|YP_004384792.1| - 7.2e-07 29.3 7.6 1.4e-06 28.4 5.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508364|ref|YP_004384792.1| - 1.1e-06 28.3 21.7 1.3e-05 24.8 8.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330508364|ref|YP_004384792.1| - 7.1e-06 25.9 10.4 2.3e-05 24.3 7.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330508364|ref|YP_004384792.1| - 4.9e-05 22.9 14.8 0.0075 16.1 2.3 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330508364|ref|YP_004384792.1| - 7.9e-05 22.9 12.2 0.0069 16.7 8.7 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330508364|ref|YP_004384792.1| - 0.0047 16.7 13.2 0.037 13.8 9.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330508364|ref|YP_004384792.1| - 0.0054 17.1 13.0 0.065 13.6 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330508364|ref|YP_004384792.1| - 0.016 15.4 10.8 0.58 10.6 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|330508364|ref|YP_004384792.1| - 0.14 12.7 18.5 1.7 9.4 4.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330508364|ref|YP_004384792.1| - 0.15 12.6 12.4 0.59 10.7 1.9 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|330508364|ref|YP_004384792.1| - 2.4 8.5 15.2 8.1 6.9 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain CMD PF02627.15 gi|330508365|ref|YP_004384793.1| - 1e-36 124.5 0.7 2e-19 69.1 0.1 2.1 2 0 0 2 2 2 2 Carboxymuconolactone decarboxylase family DUF4026 PF13218.1 gi|330508365|ref|YP_004384793.1| - 0.073 11.9 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4026) TetR_N PF00440.18 gi|330508366|ref|YP_004384794.1| - 3.6e-12 45.7 0.0 6.1e-12 44.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_4 PF08359.6 gi|330508366|ref|YP_004384794.1| - 0.014 15.2 0.0 0.064 13.1 0.0 2.0 1 1 0 1 1 1 0 YsiA-like protein, C-terminal region TetR_C_5 PF08360.6 gi|330508366|ref|YP_004384794.1| - 0.067 13.1 0.0 0.13 12.2 0.0 1.7 1 1 0 1 1 1 0 QacR-like protein, C-terminal region Sigma54_CBD PF04963.8 gi|330508366|ref|YP_004384794.1| - 0.071 12.5 0.1 0.13 11.6 0.0 1.5 1 1 0 1 1 1 0 Sigma-54 factor, core binding domain RHH_2 PF03693.9 gi|330508366|ref|YP_004384794.1| - 0.11 12.7 0.0 0.37 10.9 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0156) TetR_C_9 PF14514.1 gi|330508366|ref|YP_004384794.1| - 0.11 12.2 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator, TetR, C-terminal PIRT PF15099.1 gi|330508367|ref|YP_004384795.1| - 0.97 8.6 5.2 6.8 5.9 0.0 3.4 4 0 0 4 4 4 0 Phosphoinositide-interacting protein family Amidohydro_4 PF13147.1 gi|330508368|ref|YP_004384796.1| - 5.7e-24 85.6 10.8 1.5e-23 84.2 7.5 1.7 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|330508368|ref|YP_004384796.1| - 2.6e-20 73.3 0.1 8.8e-20 71.6 0.1 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|330508368|ref|YP_004384796.1| - 9.7e-14 50.9 0.0 2.6e-13 49.5 0.0 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|330508368|ref|YP_004384796.1| - 1.4e-06 27.7 9.9 7.6e-05 22.1 1.4 3.5 1 1 1 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.15 gi|330508368|ref|YP_004384796.1| - 0.033 14.3 0.0 0.087 12.9 0.0 1.6 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain polyprenyl_synt PF00348.12 gi|330508369|ref|YP_004384797.1| - 5e-61 205.8 0.0 6.7e-61 205.4 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|330508370|ref|YP_004384798.1| - 2.8e-14 53.2 0.3 6.9e-14 51.9 0.2 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|330508370|ref|YP_004384798.1| - 4.9e-09 35.8 0.1 1.3e-08 34.5 0.1 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|330508370|ref|YP_004384798.1| - 5.8e-07 29.2 1.2 1.4e-05 24.7 0.1 2.4 2 1 0 2 2 2 2 Beta-lactamase superfamily domain FMN_dh PF01070.13 gi|330508371|ref|YP_004384799.1| - 4.4e-28 98.1 0.0 9.9e-15 54.2 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|330508371|ref|YP_004384799.1| - 0.00036 19.5 0.1 0.012 14.5 0.0 2.2 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|330508371|ref|YP_004384799.1| - 0.029 13.3 0.1 0.061 12.2 0.1 1.5 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase NMO PF03060.10 gi|330508371|ref|YP_004384799.1| - 0.038 13.1 0.8 1.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Nitronate monooxygenase Glu_synthase PF01645.12 gi|330508371|ref|YP_004384799.1| - 0.089 11.6 5.7 0.64 8.8 2.2 2.6 2 1 0 2 2 2 0 Conserved region in glutamate synthase AA_kinase PF00696.23 gi|330508372|ref|YP_004384800.1| - 7.8e-35 120.5 0.1 8.9e-35 120.3 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family Maf_N PF08383.6 gi|330508372|ref|YP_004384800.1| - 0.075 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Maf N-terminal region GHMP_kinases_N PF00288.21 gi|330508373|ref|YP_004384801.1| - 7.8e-21 73.9 0.2 7.8e-21 73.9 0.2 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|330508373|ref|YP_004384801.1| - 2.6e-11 43.5 1.4 5.8e-11 42.4 0.9 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|330508373|ref|YP_004384801.1| - 0.068 12.4 0.0 0.14 11.4 0.0 1.6 1 0 0 1 1 1 0 Galactokinase galactose-binding signature Memo PF01875.12 gi|330508374|ref|YP_004384802.1| - 2e-64 217.1 0.0 2.4e-64 216.8 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|330508374|ref|YP_004384802.1| - 0.042 12.8 0.0 0.051 12.5 0.0 1.2 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.15 gi|330508375|ref|YP_004384803.1| - 1.5e-40 138.6 0.1 9.8e-21 73.9 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 PHP PF02811.14 gi|330508375|ref|YP_004384803.1| - 0.028 14.2 0.0 0.079 12.7 0.0 1.6 2 0 0 2 2 2 0 PHP domain Peripla_BP_4 PF13407.1 gi|330508375|ref|YP_004384803.1| - 0.031 13.6 1.6 0.046 13.0 0.9 1.4 1 1 0 1 1 1 0 Periplasmic binding protein domain Avirulence PF03377.8 gi|330508375|ref|YP_004384803.1| - 0.12 11.0 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA RNA_pol_Rpb6 PF01192.17 gi|330508376|ref|YP_004384804.1| - 2.5e-18 65.5 0.1 3.1e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|330508377|ref|YP_004384805.1| - 1.4e-27 95.5 0.9 1.5e-27 95.3 0.6 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|330508377|ref|YP_004384805.1| - 0.0041 17.1 0.1 0.0045 17.0 0.1 1.1 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.14 gi|330508378|ref|YP_004384806.1| - 7.2e-34 116.6 0.5 8.2e-34 116.4 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|330508379|ref|YP_004384807.1| - 2.5e-24 85.7 0.0 3.2e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|330508380|ref|YP_004384808.1| - 3.9e-17 62.8 0.0 5.4e-17 62.3 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L18e/L15 TctA PF01970.11 gi|330508381|ref|YP_004384809.1| - 7.2e-70 235.4 43.2 8.9e-70 235.2 29.9 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family NTP_transferase PF00483.18 gi|330508383|ref|YP_004384811.1| - 1.1e-35 123.1 0.0 1.4e-35 122.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|330508383|ref|YP_004384811.1| - 2e-18 64.9 21.5 2.3e-08 33.1 1.0 4.4 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|330508383|ref|YP_004384811.1| - 3.3e-16 59.7 0.0 4.3e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|330508383|ref|YP_004384811.1| - 3.2e-05 23.5 0.0 4.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|330508383|ref|YP_004384811.1| - 0.0011 18.4 0.2 0.0011 18.4 0.2 4.4 3 1 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase DegT_DnrJ_EryC1 PF01041.12 gi|330508384|ref|YP_004384812.1| - 3.5e-128 427.6 0.0 3.9e-128 427.5 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|330508384|ref|YP_004384812.1| - 2.2e-06 27.0 0.0 4.7e-06 25.9 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|330508384|ref|YP_004384812.1| - 3.9e-06 25.8 0.0 6.2e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|330508384|ref|YP_004384812.1| - 0.003 15.9 0.0 0.0059 14.9 0.0 1.5 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GFO_IDH_MocA PF01408.17 gi|330508385|ref|YP_004384813.1| - 5.8e-25 88.1 0.5 1.7e-24 86.6 0.1 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|330508385|ref|YP_004384813.1| - 1.9e-08 34.3 0.0 4.5e-08 33.1 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|330508385|ref|YP_004384813.1| - 3.7e-07 29.4 0.5 1.7e-06 27.3 0.0 2.2 2 1 1 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|330508385|ref|YP_004384813.1| - 0.0052 17.0 0.1 0.053 13.8 0.0 2.4 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|330508385|ref|YP_004384813.1| - 0.0096 16.3 0.1 0.045 14.1 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.14 gi|330508385|ref|YP_004384813.1| - 0.011 16.2 0.1 0.024 15.1 0.1 1.6 1 0 0 1 1 1 0 CoA binding domain IlvN PF07991.7 gi|330508385|ref|YP_004384813.1| - 0.015 14.6 0.1 0.028 13.7 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|330508385|ref|YP_004384813.1| - 0.029 14.5 0.1 0.1 12.7 0.0 1.8 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain OCD_Mu_crystall PF02423.10 gi|330508385|ref|YP_004384813.1| - 0.031 13.0 0.0 0.046 12.4 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Hexapep PF00132.19 gi|330508386|ref|YP_004384814.1| - 2.9e-25 86.5 12.2 1.1e-07 31.0 0.1 3.4 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|330508386|ref|YP_004384814.1| - 3.6e-15 55.2 11.4 1.6e-06 27.5 0.9 3.4 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase Desulfoferrod_N PF06397.7 gi|330508386|ref|YP_004384814.1| - 0.014 14.7 0.1 0.045 13.1 0.1 1.9 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain DUF2613 PF11021.3 gi|330508386|ref|YP_004384814.1| - 0.073 12.7 1.8 0.15 11.8 1.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) zf-CSL PF05207.8 gi|330508386|ref|YP_004384814.1| - 0.24 10.9 1.6 0.4 10.2 0.5 1.8 2 0 0 2 2 2 0 CSL zinc finger UDPG_MGDP_dh_N PF03721.9 gi|330508387|ref|YP_004384815.1| - 2.1e-34 118.5 0.0 2.9e-34 118.0 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|330508387|ref|YP_004384815.1| - 1.9e-18 66.4 0.0 2.9e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.10 gi|330508387|ref|YP_004384815.1| - 1.6e-05 24.7 0.0 5.3e-05 23.1 0.0 1.9 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|330508387|ref|YP_004384815.1| - 0.00056 19.6 0.0 0.0019 17.9 0.0 1.9 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|330508387|ref|YP_004384815.1| - 0.0014 18.3 0.0 0.005 16.5 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|330508387|ref|YP_004384815.1| - 0.01 15.9 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FAD_binding_3 PF01494.14 gi|330508387|ref|YP_004384815.1| - 0.023 13.7 0.4 0.057 12.4 0.0 1.8 2 0 0 2 2 2 0 FAD binding domain TrkA_N PF02254.13 gi|330508387|ref|YP_004384815.1| - 0.027 14.4 0.1 0.068 13.1 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain UPF0146 PF03686.8 gi|330508387|ref|YP_004384815.1| - 0.11 12.3 0.1 0.45 10.3 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0146) Epimerase_2 PF02350.14 gi|330508388|ref|YP_004384816.1| - 4.7e-100 334.7 0.0 5.4e-100 334.5 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|330508388|ref|YP_004384816.1| - 0.0087 14.9 0.0 0.012 14.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_28 PF03033.15 gi|330508388|ref|YP_004384816.1| - 0.0089 15.7 0.0 0.13 12.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_1_4 PF13692.1 gi|330508388|ref|YP_004384816.1| - 0.065 13.3 0.0 0.55 10.3 0.0 2.3 2 1 0 2 2 2 0 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330508389|ref|YP_004384817.1| - 6e-11 42.6 0.0 2.7e-10 40.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|330508389|ref|YP_004384817.1| - 2.9e-07 30.4 0.0 2.4e-05 24.2 0.0 2.2 1 1 1 2 2 2 2 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|330508389|ref|YP_004384817.1| - 8.3e-06 26.0 0.0 3e-05 24.2 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|330508389|ref|YP_004384817.1| - 2.8e-05 23.6 0.0 0.00013 21.4 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|330508389|ref|YP_004384817.1| - 7.3e-05 22.5 0.0 0.00017 21.3 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 MULE PF10551.4 gi|330508390|ref|YP_004384818.1| - 3.2e-08 33.6 0.0 8.8e-08 32.2 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|330508390|ref|YP_004384818.1| - 6.6e-07 28.8 1.0 8.8e-06 25.1 0.7 2.0 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|330508390|ref|YP_004384818.1| - 0.012 15.7 0.1 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain DZR PF12773.2 gi|330508390|ref|YP_004384818.1| - 0.026 14.3 2.1 0.059 13.1 1.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|330508390|ref|YP_004384818.1| - 0.048 13.9 2.9 0.11 12.7 0.7 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Terminase_GpA PF05876.7 gi|330508390|ref|YP_004384818.1| - 0.35 9.1 1.6 4.5 5.4 0.2 2.1 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) zf-ISL3 PF14690.1 gi|330508390|ref|YP_004384818.1| - 1.5 8.9 3.8 1.4 9.0 0.7 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|330508390|ref|YP_004384818.1| - 1.5 8.1 5.8 12 5.2 1.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DDE_Tnp_1 PF01609.16 gi|330508391|ref|YP_004384819.1| - 2.5e-11 43.5 0.0 1e-10 41.5 0.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain Hemagglutinin PF00509.13 gi|330508391|ref|YP_004384819.1| - 0.13 10.4 0.0 0.33 9.0 0.0 1.6 2 0 0 2 2 2 0 Haemagglutinin SIS PF01380.17 gi|330508392|ref|YP_004384820.1| - 1.7e-41 140.8 0.4 1.3e-21 76.5 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|330508392|ref|YP_004384820.1| - 7.5e-24 84.1 0.0 1.3e-23 83.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|330508392|ref|YP_004384820.1| - 5.6e-19 68.0 0.1 3.2e-15 55.6 0.0 2.8 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|330508392|ref|YP_004384820.1| - 1.4e-18 66.7 0.0 2.5e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|330508392|ref|YP_004384820.1| - 0.0038 15.9 0.1 0.0062 15.2 0.1 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|330508392|ref|YP_004384820.1| - 0.05 13.3 1.1 1.4 8.6 0.0 3.1 3 1 1 4 4 4 0 SIS domain Mpt_N PF09176.6 gi|330508392|ref|YP_004384820.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal NTP_transferase PF00483.18 gi|330508393|ref|YP_004384821.1| - 1.6e-34 119.3 0.0 2.4e-34 118.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|330508393|ref|YP_004384821.1| - 9.7e-18 62.8 15.3 3.9e-07 29.2 0.1 5.6 3 1 2 6 6 6 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|330508393|ref|YP_004384821.1| - 5.9e-15 55.6 0.0 8.6e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|330508393|ref|YP_004384821.1| - 5.3e-09 35.4 17.0 7.5e-06 25.4 0.2 5.6 5 1 0 5 5 5 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|330508393|ref|YP_004384821.1| - 0.0003 19.5 3.9 0.023 13.2 0.8 2.3 1 1 1 2 2 2 2 L-fucokinase IspD PF01128.14 gi|330508393|ref|YP_004384821.1| - 0.013 14.9 0.0 0.031 13.8 0.0 1.6 1 1 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glyco_trans_1_4 PF13692.1 gi|330508394|ref|YP_004384822.1| - 1.8e-17 63.7 0.0 3.4e-17 62.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|330508394|ref|YP_004384822.1| - 1.2e-10 41.1 0.0 2.3e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|330508394|ref|YP_004384822.1| - 9.5e-09 35.5 0.0 1.6e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|330508394|ref|YP_004384822.1| - 7.5e-08 32.5 0.0 1.7e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|330508394|ref|YP_004384822.1| - 4.8e-05 23.1 0.1 0.00011 21.9 0.1 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|330508394|ref|YP_004384822.1| - 0.00053 19.8 0.5 0.00082 19.2 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|330508395|ref|YP_004384823.1| - 2.9e-26 91.9 0.0 4.2e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330508395|ref|YP_004384823.1| - 1.2e-15 57.8 0.0 1.8e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|330508395|ref|YP_004384823.1| - 6.3e-05 22.7 0.0 0.0001 22.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|330508395|ref|YP_004384823.1| - 0.00022 21.4 0.1 0.00038 20.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Exostosin PF03016.10 gi|330508395|ref|YP_004384823.1| - 0.053 12.5 0.0 0.085 11.8 0.0 1.3 1 0 0 1 1 1 0 Exostosin family Glyco_trans_4_4 PF13579.1 gi|330508395|ref|YP_004384823.1| - 0.14 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|330508396|ref|YP_004384824.1| - 1.1e-21 77.0 0.0 1.8e-21 76.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330508396|ref|YP_004384824.1| - 9.6e-15 54.9 0.0 2.4e-14 53.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|330508396|ref|YP_004384824.1| - 0.00025 21.2 0.0 0.001 19.2 0.0 1.8 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|330508397|ref|YP_004384825.1| - 2.3e-32 112.0 0.0 4.1e-32 111.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330508397|ref|YP_004384825.1| - 5.8e-13 49.1 0.0 6.1e-12 45.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|330508397|ref|YP_004384825.1| - 3.9e-08 32.7 0.0 8.8e-08 31.5 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 TPR_2 PF07719.12 gi|330508397|ref|YP_004384825.1| - 0.00011 21.8 0.5 0.00032 20.3 0.3 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat Glyco_tranf_2_4 PF13704.1 gi|330508397|ref|YP_004384825.1| - 0.00083 19.6 0.1 0.0017 18.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 TPR_19 PF14559.1 gi|330508397|ref|YP_004384825.1| - 0.0042 17.3 0.1 0.0085 16.4 0.1 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330508397|ref|YP_004384825.1| - 0.016 15.6 0.5 0.075 13.5 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330508397|ref|YP_004384825.1| - 0.018 14.7 0.0 0.051 13.3 0.0 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330508397|ref|YP_004384825.1| - 0.022 14.3 0.5 0.064 12.8 0.1 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330508397|ref|YP_004384825.1| - 0.032 14.0 1.9 0.098 12.4 0.2 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330508397|ref|YP_004384825.1| - 0.04 14.6 0.1 0.11 13.1 0.0 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330508397|ref|YP_004384825.1| - 0.051 13.2 0.7 0.11 12.1 0.1 1.8 2 0 0 2 2 2 0 TPR repeat TPR_14 PF13428.1 gi|330508397|ref|YP_004384825.1| - 0.071 13.7 0.1 0.2 12.3 0.0 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat Polysacc_synt PF01943.12 gi|330508398|ref|YP_004384826.1| - 1.4e-44 152.3 44.3 1.4e-44 152.3 30.7 3.0 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|330508398|ref|YP_004384826.1| - 7.6e-19 67.9 18.7 7.6e-19 67.9 13.0 4.1 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|330508398|ref|YP_004384826.1| - 1.1e-13 51.2 34.0 1.1e-13 51.2 23.5 2.8 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|330508398|ref|YP_004384826.1| - 6.9e-09 34.6 43.4 6.9e-09 34.6 30.1 1.7 1 1 1 2 2 2 1 MviN-like protein dTDP_sugar_isom PF00908.12 gi|330508399|ref|YP_004384827.1| - 5.6e-09 35.5 0.0 3e-08 33.1 0.0 1.8 1 1 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_2 PF07883.6 gi|330508399|ref|YP_004384827.1| - 4.3e-05 22.9 0.1 7.9e-05 22.0 0.1 1.3 1 0 0 1 1 1 1 Cupin domain DUF1971 PF09313.6 gi|330508399|ref|YP_004384827.1| - 0.0099 15.5 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1971) RmlD_sub_bind PF04321.12 gi|330508400|ref|YP_004384828.1| - 7.3e-74 248.2 0.0 8e-74 248.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|330508400|ref|YP_004384828.1| - 8e-26 90.9 0.0 1.2e-25 90.2 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|330508400|ref|YP_004384828.1| - 2.8e-12 46.1 0.0 1.8e-11 43.4 0.0 1.9 2 0 0 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.14 gi|330508400|ref|YP_004384828.1| - 1.5e-11 43.5 0.0 3.1e-11 42.5 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|330508400|ref|YP_004384828.1| - 3.5e-11 42.5 0.0 8.7e-10 37.9 0.0 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|330508400|ref|YP_004384828.1| - 2.8e-09 37.2 0.0 4.9e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding DFP PF04127.10 gi|330508400|ref|YP_004384828.1| - 0.0011 18.6 0.1 0.0093 15.5 0.0 2.3 2 1 1 3 3 3 1 DNA / pantothenate metabolism flavoprotein adh_short PF00106.20 gi|330508400|ref|YP_004384828.1| - 0.058 13.3 0.6 1.6 8.6 0.3 2.6 2 1 0 2 2 2 0 short chain dehydrogenase Epimerase PF01370.16 gi|330508401|ref|YP_004384829.1| - 2.4e-64 217.0 0.0 3e-64 216.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|330508401|ref|YP_004384829.1| - 1.7e-21 76.3 0.0 2e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|330508401|ref|YP_004384829.1| - 6.1e-18 64.4 0.0 7.7e-18 64.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|330508401|ref|YP_004384829.1| - 3.9e-13 48.9 0.0 4.3e-12 45.5 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|330508401|ref|YP_004384829.1| - 3.9e-12 45.6 0.0 2.2e-11 43.1 0.0 1.9 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|330508401|ref|YP_004384829.1| - 2.6e-06 27.4 0.0 6.7e-06 26.1 0.0 1.6 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|330508401|ref|YP_004384829.1| - 2.4e-05 24.1 0.0 0.00012 21.9 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose 4-epimerase C-term subunit NAD_binding_10 PF13460.1 gi|330508401|ref|YP_004384829.1| - 0.00058 19.9 0.0 0.00078 19.4 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|330508401|ref|YP_004384829.1| - 0.056 13.0 0.0 0.1 12.2 0.0 1.5 1 1 0 1 1 1 0 KR domain Saccharop_dh PF03435.13 gi|330508401|ref|YP_004384829.1| - 0.098 11.6 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NTP_transferase PF00483.18 gi|330508402|ref|YP_004384830.1| - 1.8e-51 174.8 0.0 2.1e-51 174.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|330508402|ref|YP_004384830.1| - 3.7e-07 30.3 0.0 5.3e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.7 gi|330508402|ref|YP_004384830.1| - 0.0028 16.2 0.7 0.0042 15.6 0.5 1.2 1 0 0 1 1 1 1 L-fucokinase Hexapep PF00132.19 gi|330508402|ref|YP_004384830.1| - 0.0076 15.7 10.0 0.09 12.3 0.1 4.2 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) HMGL-like PF00682.14 gi|330508403|ref|YP_004384831.1| - 1.3e-76 257.4 0.9 1.9e-76 256.8 0.6 1.2 1 0 0 1 1 1 1 HMGL-like MTHFR PF02219.12 gi|330508403|ref|YP_004384831.1| - 0.012 14.7 0.4 1.9 7.5 0.0 2.2 2 0 0 2 2 2 0 Methylenetetrahydrofolate reductase Repressor_Mnt PF11423.3 gi|330508403|ref|YP_004384831.1| - 0.098 11.9 1.8 0.25 10.7 1.3 1.7 1 0 0 1 1 1 0 Regulatory protein Mnt Cytochrom_C552 PF02335.10 gi|330508403|ref|YP_004384831.1| - 0.1 11.2 0.5 1.8 7.1 0.0 2.1 1 1 1 2 2 2 0 Cytochrome c552 GATase PF00117.23 gi|330508404|ref|YP_004384832.1| - 4e-18 65.5 0.0 5.1e-18 65.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|330508404|ref|YP_004384832.1| - 5.1e-05 22.8 0.6 0.00072 19.0 0.3 2.4 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|330508404|ref|YP_004384832.1| - 0.0032 17.0 0.1 0.004 16.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|330508404|ref|YP_004384832.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.5 2 0 0 2 2 2 0 SNO glutamine amidotransferase family GATase_5 PF13507.1 gi|330508404|ref|YP_004384832.1| - 0.082 11.8 0.0 2 7.2 0.0 2.2 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain ATP_bind_4 PF01902.12 gi|330508405|ref|YP_004384833.1| - 1.2e-61 207.8 0.0 1.3e-61 207.7 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region GATase_3 PF07685.9 gi|330508406|ref|YP_004384834.1| - 2.4e-41 140.9 0.1 3.8e-41 140.3 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|330508406|ref|YP_004384834.1| - 8.9e-30 103.5 0.0 1.3e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|330508406|ref|YP_004384834.1| - 6.3e-22 78.1 0.0 1.6e-21 76.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|330508406|ref|YP_004384834.1| - 4e-06 26.5 0.0 2.1e-05 24.2 0.0 2.1 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B GATase PF00117.23 gi|330508406|ref|YP_004384834.1| - 5.2e-05 22.7 0.0 9.9e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I AAA_31 PF13614.1 gi|330508406|ref|YP_004384834.1| - 0.005 16.7 0.2 0.11 12.4 0.0 2.7 4 0 0 4 4 4 1 AAA domain SNO PF01174.14 gi|330508406|ref|YP_004384834.1| - 0.0073 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 SNO glutamine amidotransferase family AAA_17 PF13207.1 gi|330508406|ref|YP_004384834.1| - 0.037 14.8 0.8 0.9 10.3 0.5 2.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|330508406|ref|YP_004384834.1| - 0.054 13.0 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|330508406|ref|YP_004384834.1| - 0.087 12.5 0.1 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 NTPase FMN_red PF03358.10 gi|330508407|ref|YP_004384835.1| - 4e-22 78.3 0.0 4.9e-22 78.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|330508407|ref|YP_004384835.1| - 6.9e-10 38.7 0.0 8.5e-10 38.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold PPR_3 PF13812.1 gi|330508407|ref|YP_004384835.1| - 0.049 13.9 0.2 5.9 7.4 0.0 2.9 3 0 0 3 3 3 0 Pentatricopeptide repeat domain IMS_C PF11799.3 gi|330508408|ref|YP_004384836.1| - 2.1e-22 79.4 0.2 4.4e-22 78.3 0.1 1.6 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS PF00817.15 gi|330508408|ref|YP_004384836.1| - 5.8e-11 42.3 0.0 1.3e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 impB/mucB/samB family HHH_5 PF14520.1 gi|330508408|ref|YP_004384836.1| - 3.2e-07 30.3 0.7 1.5e-06 28.2 0.3 2.4 2 1 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|330508408|ref|YP_004384836.1| - 1.3e-06 28.0 0.1 4e-06 26.5 0.1 1.9 1 0 0 1 1 1 1 IMS family HHH motif Cdd1 PF11731.3 gi|330508408|ref|YP_004384836.1| - 0.00016 21.5 0.0 0.00059 19.6 0.0 2.1 1 1 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.1 gi|330508408|ref|YP_004384836.1| - 0.0038 17.1 0.0 0.0098 15.8 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) OrfB_IS605 PF01385.14 gi|330508409|ref|YP_004384837.1| - 3.3e-40 137.8 0.8 5.6e-40 137.1 0.0 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330508409|ref|YP_004384837.1| - 7.3e-24 83.2 0.0 1.7e-23 82.0 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330508409|ref|YP_004384837.1| - 4.8e-20 70.6 2.5 9.7e-20 69.6 1.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|330508409|ref|YP_004384837.1| - 0.0042 16.8 0.1 0.0078 16.0 0.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|330508409|ref|YP_004384837.1| - 0.12 11.7 1.2 1.1 8.6 0.0 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding RecR PF02132.10 gi|330508409|ref|YP_004384837.1| - 0.55 9.7 2.9 6.4 6.2 0.1 3.0 2 1 1 3 3 3 0 RecR protein DUF3786 PF12654.2 gi|330508410|ref|YP_004384838.1| - 1.8e-29 102.2 0.0 2.4e-29 101.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3786) UPF0118 PF01594.11 gi|330508411|ref|YP_004384839.1| - 2.4e-42 145.0 47.4 2.8e-42 144.8 32.8 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 Pam17 PF08566.5 gi|330508411|ref|YP_004384839.1| - 2.8 7.6 6.3 14 5.2 0.2 2.7 3 0 0 3 3 3 0 Mitochondrial import protein Pam17 EamA PF00892.15 gi|330508412|ref|YP_004384840.1| - 7.3e-46 155.2 41.4 5.5e-25 87.8 8.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|330508412|ref|YP_004384840.1| - 1.6e-11 44.3 46.1 4.3e-06 26.9 8.5 4.0 1 1 3 4 4 4 2 Multidrug resistance efflux transporter UAA PF08449.6 gi|330508412|ref|YP_004384840.1| - 0.0027 16.6 26.3 0.0033 16.3 18.2 1.1 1 0 0 1 1 1 1 UAA transporter family UPF0546 PF10639.4 gi|330508412|ref|YP_004384840.1| - 0.61 9.9 14.0 0.14 11.9 1.0 2.7 2 1 0 2 2 2 0 Uncharacterised protein family UPF0546 Abhydrolase_6 PF12697.2 gi|330508413|ref|YP_004384841.1| - 5.9e-17 62.3 0.0 9.6e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|330508413|ref|YP_004384841.1| - 1.4e-15 57.3 0.0 3.6e-14 52.7 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|330508413|ref|YP_004384841.1| - 5.9e-11 42.0 0.0 9.6e-06 24.9 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family BAAT_C PF08840.6 gi|330508413|ref|YP_004384841.1| - 7.7e-11 42.1 0.0 2.2e-05 24.3 0.0 2.2 2 0 0 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.13 gi|330508413|ref|YP_004384841.1| - 5.2e-10 38.9 0.0 4.4e-07 29.3 0.0 2.1 2 0 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|330508413|ref|YP_004384841.1| - 2e-06 27.5 0.0 1e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|330508413|ref|YP_004384841.1| - 0.013 14.9 0.0 1.6 8.1 0.0 2.3 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Abhydrolase_8 PF06259.7 gi|330508413|ref|YP_004384841.1| - 0.016 14.6 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase Abhydrolase_3 PF07859.8 gi|330508413|ref|YP_004384841.1| - 0.02 14.4 0.0 0.22 11.0 0.0 2.0 2 0 0 2 2 2 0 alpha/beta hydrolase fold PE-PPE PF08237.6 gi|330508413|ref|YP_004384841.1| - 0.027 13.8 0.0 0.039 13.3 0.0 1.2 1 0 0 1 1 1 0 PE-PPE domain Hydrolase_4 PF12146.3 gi|330508413|ref|YP_004384841.1| - 0.075 12.8 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase PGAP1 PF07819.8 gi|330508413|ref|YP_004384841.1| - 0.078 12.5 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein AXE1 PF05448.7 gi|330508413|ref|YP_004384841.1| - 0.17 10.3 0.0 0.29 9.5 0.0 1.3 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) UPF0150 PF03681.10 gi|330508414|ref|YP_004384842.1| - 1.1e-20 72.9 0.2 1.5e-20 72.5 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) PulG PF11773.3 gi|330508414|ref|YP_004384842.1| - 0.0073 16.0 0.1 0.011 15.4 0.1 1.2 1 0 0 1 1 1 1 Type II secretory pathway pseudopilin DUF3832 PF12909.2 gi|330508414|ref|YP_004384842.1| - 0.034 14.1 0.0 0.052 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) Radical_SAM PF04055.16 gi|330508415|ref|YP_004384843.1| - 6.4e-18 65.4 0.1 1.8e-17 63.9 0.1 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330508415|ref|YP_004384843.1| - 3e-14 53.3 0.2 4.9e-14 52.6 0.2 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330508415|ref|YP_004384843.1| - 1.3e-11 44.5 0.4 2.9e-11 43.4 0.2 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer2_4 PF13510.1 gi|330508415|ref|YP_004384843.1| - 8.5e-11 41.5 0.0 1.6e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|330508415|ref|YP_004384843.1| - 0.0012 18.5 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain UBA_4 PF14555.1 gi|330508415|ref|YP_004384843.1| - 0.0042 16.5 0.0 0.0084 15.6 0.0 1.4 1 0 0 1 1 1 1 UBA-like domain Sod_Fe_C PF02777.13 gi|330508417|ref|YP_004384845.1| - 2.8e-38 129.9 1.1 5e-38 129.1 0.2 1.7 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|330508417|ref|YP_004384845.1| - 4.5e-30 103.7 0.5 8.3e-30 102.8 0.3 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain AhpC-TSA PF00578.16 gi|330508418|ref|YP_004384846.1| - 3e-32 110.9 0.0 4.2e-32 110.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|330508418|ref|YP_004384846.1| - 4.2e-14 51.9 1.2 7.1e-14 51.1 0.8 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|330508418|ref|YP_004384846.1| - 2.4e-12 46.6 0.0 5.7e-12 45.3 0.0 1.5 1 1 0 2 2 2 1 Redoxin FUR PF01475.14 gi|330508419|ref|YP_004384847.1| - 4.6e-31 107.2 0.0 5.8e-31 106.9 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.6 gi|330508419|ref|YP_004384847.1| - 0.027 13.6 0.1 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_11 PF08279.7 gi|330508419|ref|YP_004384847.1| - 0.075 12.6 0.3 0.25 10.9 0.0 1.9 2 0 0 2 2 2 0 HTH domain Peptidase_M48 PF01435.13 gi|330508420|ref|YP_004384848.1| - 1.3e-36 126.2 0.0 1.8e-36 125.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|330508420|ref|YP_004384848.1| - 0.00045 19.2 0.0 0.00078 18.5 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 ABC2_membrane_4 PF12730.2 gi|330508420|ref|YP_004384848.1| - 0.1 11.7 2.9 1.8 7.6 0.0 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein Rhomboid PF01694.17 gi|330508421|ref|YP_004384849.1| - 3.4e-31 108.2 17.1 3.4e-31 108.2 11.9 1.7 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|330508421|ref|YP_004384849.1| - 0.00064 20.0 3.8 0.0034 17.6 0.0 2.9 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) Spo7 PF03907.8 gi|330508421|ref|YP_004384849.1| - 0.27 10.8 0.1 0.27 10.8 0.1 1.7 2 1 0 2 2 2 0 Spo7-like protein TPR_11 PF13414.1 gi|330508422|ref|YP_004384850.1| - 2.1e-49 165.0 14.3 3.4e-19 68.2 0.3 3.7 2 2 2 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|330508422|ref|YP_004384850.1| - 4.3e-44 146.3 5.2 1.5e-09 37.0 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330508422|ref|YP_004384850.1| - 2.3e-38 127.0 5.9 1.5e-07 30.7 0.0 5.3 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330508422|ref|YP_004384850.1| - 3e-29 101.0 8.3 5.9e-15 55.4 0.5 4.1 2 1 1 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330508422|ref|YP_004384850.1| - 1.4e-23 80.8 3.8 7.5e-05 22.2 0.0 5.9 3 3 1 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330508422|ref|YP_004384850.1| - 4.2e-22 76.4 7.7 5.3e-06 26.2 0.0 6.1 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330508422|ref|YP_004384850.1| - 8.2e-21 72.6 9.4 2.5e-05 24.5 0.2 5.2 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330508422|ref|YP_004384850.1| - 3.2e-20 71.8 8.2 1.8e-09 37.4 0.2 3.6 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330508422|ref|YP_004384850.1| - 3.9e-19 68.7 5.8 1.8e-08 34.5 0.4 3.3 1 1 1 3 3 3 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|330508422|ref|YP_004384850.1| - 3.9e-18 65.3 1.1 1.6e-09 37.7 0.0 3.1 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|330508422|ref|YP_004384850.1| - 1.7e-17 63.0 7.4 6.9e-07 29.0 0.1 4.3 2 1 1 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330508422|ref|YP_004384850.1| - 8.4e-16 57.2 3.3 0.0019 18.5 0.1 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_4 PF07721.9 gi|330508422|ref|YP_004384850.1| - 2.5e-13 49.0 1.4 0.13 12.8 0.1 4.7 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330508422|ref|YP_004384850.1| - 1.9e-09 37.1 5.8 0.24 11.4 0.1 4.5 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330508422|ref|YP_004384850.1| - 2.3e-08 33.2 8.7 0.075 12.8 0.0 5.3 5 1 0 5 5 5 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330508422|ref|YP_004384850.1| - 6.3e-06 25.9 3.7 0.007 16.2 0.0 4.4 3 1 2 5 5 5 1 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.12 gi|330508422|ref|YP_004384850.1| - 1.3e-05 25.4 1.0 0.019 15.2 0.0 3.0 1 1 3 4 4 4 1 Bacterial transcriptional activator domain TPR_20 PF14561.1 gi|330508422|ref|YP_004384850.1| - 1.4e-05 25.1 0.3 1.4 9.0 0.0 3.4 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_3 PF07720.7 gi|330508422|ref|YP_004384850.1| - 4.8e-05 23.0 2.7 2.5 7.9 0.2 4.2 3 2 0 3 3 3 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330508422|ref|YP_004384850.1| - 8.1e-05 22.4 2.0 3.8 7.3 0.0 4.4 1 1 4 5 5 5 1 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|330508422|ref|YP_004384850.1| - 0.00041 19.2 0.6 0.74 8.4 0.1 2.9 1 1 2 3 3 3 1 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|330508422|ref|YP_004384850.1| - 0.0005 19.2 1.5 0.012 14.7 0.1 2.1 1 1 1 2 2 2 1 Tetratricopeptide repeat Type_III_YscG PF09477.5 gi|330508422|ref|YP_004384850.1| - 0.00091 19.2 0.7 4.1 7.5 0.0 3.8 2 1 2 4 4 4 1 Bacterial type II secretion system chaperone protein (type_III_yscG) MIT PF04212.13 gi|330508422|ref|YP_004384850.1| - 0.004 17.0 7.0 9.1 6.2 0.3 5.0 4 1 1 5 5 5 0 MIT (microtubule interacting and transport) domain TPR_21 PF09976.4 gi|330508422|ref|YP_004384850.1| - 0.0091 15.9 2.7 1.3 8.9 0.1 2.5 1 1 0 2 2 2 1 Tetratricopeptide repeat Endotoxin_N PF03945.9 gi|330508422|ref|YP_004384850.1| - 0.013 14.9 0.1 0.024 14.0 0.1 1.4 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain ChAPs PF09295.5 gi|330508422|ref|YP_004384850.1| - 0.027 13.2 0.0 1.2 7.7 0.0 2.1 1 1 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) Alkyl_sulf_dimr PF14863.1 gi|330508422|ref|YP_004384850.1| - 0.03 14.5 0.6 1.8 8.8 0.0 2.3 2 0 0 2 2 2 0 Alkyl sulfatase dimerisation PPTA PF01239.17 gi|330508422|ref|YP_004384850.1| - 0.034 13.4 0.2 9.1 5.8 0.0 3.0 3 0 0 3 3 3 0 Protein prenyltransferase alpha subunit repeat DNA_pol_lambd_f PF10391.4 gi|330508422|ref|YP_004384850.1| - 0.039 13.4 0.2 8.9 5.9 0.0 3.6 4 0 0 4 4 4 0 Fingers domain of DNA polymerase lambda FAT PF02259.18 gi|330508422|ref|YP_004384850.1| - 0.045 12.7 0.5 5.8 5.7 0.0 2.3 1 1 1 2 2 2 0 FAT domain DUF3808 PF10300.4 gi|330508422|ref|YP_004384850.1| - 0.12 10.9 0.1 0.15 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3808) YfiO PF13525.1 gi|330508422|ref|YP_004384850.1| - 0.17 11.3 1.9 0.5 9.7 0.5 2.2 1 1 0 2 2 2 0 Outer membrane lipoprotein SRP54 PF00448.17 gi|330508423|ref|YP_004384851.1| - 1.1e-71 240.4 0.1 1.6e-71 239.8 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|330508423|ref|YP_004384851.1| - 1.2e-10 41.3 1.1 1.2e-10 41.3 0.7 2.2 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.1 gi|330508423|ref|YP_004384851.1| - 2.5e-05 23.9 0.1 4.7e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|330508423|ref|YP_004384851.1| - 8.5e-05 22.2 0.2 0.00024 20.8 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|330508423|ref|YP_004384851.1| - 0.00074 19.7 0.0 0.0018 18.4 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|330508423|ref|YP_004384851.1| - 0.00078 19.1 0.0 0.0019 17.9 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_22 PF13401.1 gi|330508423|ref|YP_004384851.1| - 0.00098 19.2 0.0 0.0026 17.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|330508423|ref|YP_004384851.1| - 0.0011 18.4 0.0 0.012 15.0 0.0 2.3 2 0 0 2 2 2 1 Thymidylate kinase AAA_33 PF13671.1 gi|330508423|ref|YP_004384851.1| - 0.0012 18.7 0.0 0.0021 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|330508423|ref|YP_004384851.1| - 0.0024 17.6 0.0 0.0054 16.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|330508423|ref|YP_004384851.1| - 0.0046 16.0 0.0 0.0087 15.1 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.18 gi|330508423|ref|YP_004384851.1| - 0.0046 16.3 1.7 0.059 12.7 1.2 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.1 gi|330508423|ref|YP_004384851.1| - 0.012 15.6 0.1 0.13 12.2 0.1 2.5 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|330508423|ref|YP_004384851.1| - 0.035 13.0 0.2 0.57 9.0 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_5 PF07728.9 gi|330508423|ref|YP_004384851.1| - 0.049 13.3 0.0 0.22 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ResIII PF04851.10 gi|330508423|ref|YP_004384851.1| - 0.054 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_17 PF13207.1 gi|330508423|ref|YP_004384851.1| - 0.057 14.2 0.1 0.15 12.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain Arf PF00025.16 gi|330508423|ref|YP_004384851.1| - 0.079 12.2 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_16 PF13191.1 gi|330508423|ref|YP_004384851.1| - 0.084 12.8 0.2 0.35 10.8 0.1 2.2 1 1 1 2 2 2 0 AAA ATPase domain NTPase_1 PF03266.10 gi|330508423|ref|YP_004384851.1| - 0.11 12.1 0.4 0.44 10.2 0.2 2.0 1 1 0 1 1 1 0 NTPase Prefoldin PF02996.12 gi|330508424|ref|YP_004384852.1| - 1.7e-22 79.3 3.8 2.2e-22 78.9 2.7 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|330508424|ref|YP_004384852.1| - 0.0043 16.7 6.6 0.014 15.1 1.3 2.1 2 0 0 2 2 2 1 Prefoldin subunit TACC PF05010.9 gi|330508424|ref|YP_004384852.1| - 0.011 15.4 1.6 0.015 15.0 1.1 1.3 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) Snf7 PF03357.16 gi|330508424|ref|YP_004384852.1| - 0.058 12.7 2.2 2.9 7.2 0.2 2.1 2 0 0 2 2 2 0 Snf7 IDO PF01231.13 gi|330508424|ref|YP_004384852.1| - 0.072 11.5 0.3 0.11 10.9 0.2 1.2 1 0 0 1 1 1 0 Indoleamine 2,3-dioxygenase Rho_Binding PF08912.6 gi|330508424|ref|YP_004384852.1| - 0.095 13.0 0.9 0.095 13.0 0.6 1.7 2 0 0 2 2 2 0 Rho Binding CppA_N PF14506.1 gi|330508424|ref|YP_004384852.1| - 0.16 11.6 0.8 0.31 10.7 0.2 1.7 2 0 0 2 2 2 0 CppA N-terminal HAUS-augmin3 PF14932.1 gi|330508424|ref|YP_004384852.1| - 0.25 10.4 4.0 0.94 8.6 0.2 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Val_tRNA-synt_C PF10458.4 gi|330508424|ref|YP_004384852.1| - 0.34 11.0 2.3 26 4.9 0.0 2.8 2 1 1 3 3 3 0 Valyl tRNA synthetase tRNA binding arm Seryl_tRNA_N PF02403.17 gi|330508424|ref|YP_004384852.1| - 0.65 10.0 4.5 8.4 6.4 0.8 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4200 PF13863.1 gi|330508424|ref|YP_004384852.1| - 3.8 7.4 7.8 7.5 6.5 2.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) FliJ PF02050.11 gi|330508424|ref|YP_004384852.1| - 6.2 6.9 8.9 12 5.9 1.0 2.3 2 1 0 2 2 2 0 Flagellar FliJ protein Nsp1_C PF05064.8 gi|330508424|ref|YP_004384852.1| - 8.3 6.0 6.4 8 6.1 0.6 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region Ribosomal_L18ae PF01775.12 gi|330508425|ref|YP_004384853.1| - 4e-07 29.9 0.0 4.5e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|330508426|ref|YP_004384854.1| - 3.5e-63 212.2 0.2 4.1e-63 212.0 0.1 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|330508427|ref|YP_004384855.1| - 2.3e-25 88.0 0.1 2.9e-25 87.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Asn_synthase PF00733.16 gi|330508428|ref|YP_004384856.1| - 9.1e-06 25.3 0.0 1.4e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|330508428|ref|YP_004384856.1| - 0.00046 19.5 0.0 0.00064 19.0 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|330508428|ref|YP_004384856.1| - 0.0042 16.4 0.0 0.0065 15.8 0.0 1.4 1 0 0 1 1 1 1 ATP-binding region tRNA_Me_trans PF03054.11 gi|330508428|ref|YP_004384856.1| - 0.01 14.4 0.0 0.015 13.8 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase dsDNA_bind PF01984.15 gi|330508429|ref|YP_004384857.1| - 1.1e-31 109.0 16.9 1.2e-31 108.8 11.7 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain 4HB_MCP_1 PF12729.2 gi|330508429|ref|YP_004384857.1| - 0.004 16.5 2.8 0.0049 16.2 1.9 1.1 1 0 0 1 1 1 1 Four helix bundle sensory module for signal transduction SF3b1 PF08920.5 gi|330508429|ref|YP_004384857.1| - 0.017 15.1 1.6 0.023 14.7 1.1 1.1 1 0 0 1 1 1 0 Splicing factor 3B subunit 1 MCPVI PF02993.9 gi|330508429|ref|YP_004384857.1| - 0.27 11.3 4.2 0.29 11.2 2.9 1.1 1 0 0 1 1 1 0 Minor capsid protein VI Endonuc_Holl PF10107.4 gi|330508429|ref|YP_004384857.1| - 5.7 6.6 7.5 6.3 6.4 4.9 1.4 1 1 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase Ribosomal_S19e PF01090.14 gi|330508430|ref|YP_004384858.1| - 1.4e-55 186.5 0.0 1.7e-55 186.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.16 gi|330508430|ref|YP_004384858.1| - 0.053 12.9 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_12 PF08461.5 gi|330508430|ref|YP_004384858.1| - 0.055 13.1 0.0 0.09 12.5 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|330508430|ref|YP_004384858.1| - 0.075 12.8 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix E1-E2_ATPase PF00122.15 gi|330508431|ref|YP_004384859.1| - 1.7e-68 230.1 5.8 1.7e-68 230.1 4.0 2.4 2 1 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|330508431|ref|YP_004384859.1| - 1.8e-51 174.2 6.4 1.8e-51 174.2 4.4 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|330508431|ref|YP_004384859.1| - 2.7e-38 132.5 0.0 1.2e-37 130.4 0.0 2.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|330508431|ref|YP_004384859.1| - 2.3e-24 85.1 0.0 4.9e-24 84.1 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|330508431|ref|YP_004384859.1| - 5.2e-19 69.1 0.0 1.1e-18 68.0 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|330508431|ref|YP_004384859.1| - 4.5e-18 64.4 0.3 1.1e-17 63.1 0.0 1.9 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|330508431|ref|YP_004384859.1| - 1.9e-06 27.6 0.4 0.00011 21.8 0.4 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Transposase_mut PF00872.13 gi|330508432|ref|YP_004384860.1| - 1.3e-104 349.7 1.1 1.6e-104 349.5 0.7 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|330508432|ref|YP_004384860.1| - 2.4e-14 53.2 0.1 6.6e-14 51.8 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.12 gi|330508432|ref|YP_004384860.1| - 3.5e-05 23.5 0.7 0.0016 18.1 0.0 2.2 1 1 1 2 2 2 2 Transposase Na_Pi_cotrans PF02690.10 gi|330508433|ref|YP_004384861.1| - 4.5e-57 191.7 35.4 4.9e-37 126.8 7.0 3.1 2 1 1 3 3 3 2 Na+/Pi-cotransporter PhoU PF01895.14 gi|330508433|ref|YP_004384861.1| - 1.1e-05 25.8 4.5 0.0099 16.3 1.8 2.5 2 0 0 2 2 2 2 PhoU domain TraT PF05818.7 gi|330508433|ref|YP_004384861.1| - 0.13 11.7 2.0 0.29 10.5 1.4 1.6 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Gly-zipper_YMGG PF13441.1 gi|330508433|ref|YP_004384861.1| - 9.6 5.8 11.3 1.6e+02 1.9 7.8 2.5 1 1 0 1 1 1 0 YMGG-like Gly-zipper SNF PF00209.13 gi|330508434|ref|YP_004384862.1| - 4.9e-68 229.8 35.2 1.6e-34 119.2 11.1 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family Usp PF00582.21 gi|330508435|ref|YP_004384863.1| - 4.3e-47 159.8 3.6 1.6e-26 93.1 0.2 2.0 2 0 0 2 2 2 2 Universal stress protein family KorB PF08535.5 gi|330508435|ref|YP_004384863.1| - 0.025 14.7 0.0 0.071 13.2 0.0 1.7 1 0 0 1 1 1 0 KorB domain OTCace_N PF02729.16 gi|330508436|ref|YP_004384864.1| - 4.7e-47 159.2 0.0 1.8e-46 157.3 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|330508436|ref|YP_004384864.1| - 3.3e-38 131.0 0.0 4.7e-38 130.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|330508437|ref|YP_004384865.1| - 4.1e-37 126.0 0.4 5.9e-37 125.5 0.3 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|330508437|ref|YP_004384865.1| - 7.8e-19 66.8 0.7 1.4e-18 66.0 0.5 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain T2SE PF00437.15 gi|330508437|ref|YP_004384865.1| - 0.042 12.7 0.1 0.052 12.4 0.1 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein FKBP_C PF00254.23 gi|330508438|ref|YP_004384866.1| - 1e-08 35.0 0.4 3.6e-07 30.1 0.1 2.5 2 1 0 2 2 2 2 FKBP-type peptidyl-prolyl cis-trans isomerase Tad PF13400.1 gi|330508439|ref|YP_004384867.1| - 0.02 14.9 0.1 0.03 14.3 0.1 1.2 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like Nitroreductase PF00881.19 gi|330508441|ref|YP_004384869.1| - 6.6e-09 35.7 0.0 0.0015 18.4 0.1 2.6 2 1 0 2 2 2 2 Nitroreductase family Transposase_20 PF02371.11 gi|330508442|ref|YP_004384870.1| - 1.2e-25 89.4 0.1 2.1e-25 88.6 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|330508442|ref|YP_004384870.1| - 1.8e-24 86.0 0.0 2.9e-24 85.3 0.0 1.3 1 0 0 1 1 1 1 Transposase Lectin_N PF03954.9 gi|330508442|ref|YP_004384870.1| - 0.028 13.8 0.0 0.35 10.2 0.0 2.2 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain PDT PF00800.13 gi|330508443|ref|YP_004384871.1| - 9.2e-58 194.7 0.0 1.2e-57 194.4 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|330508443|ref|YP_004384871.1| - 4.6e-12 45.1 0.0 1.1e-11 43.8 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|330508443|ref|YP_004384871.1| - 0.039 14.2 0.0 0.1 12.9 0.0 1.7 2 0 0 2 2 2 0 ACT domain HMG-CoA_red PF00368.13 gi|330508444|ref|YP_004384872.1| - 6.4e-88 294.9 5.7 8e-88 294.6 4.0 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Peptidase_M42 PF05343.9 gi|330508445|ref|YP_004384873.1| - 6.5e-103 343.4 0.6 7.6e-103 343.2 0.4 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|330508445|ref|YP_004384873.1| - 9.2e-11 41.5 0.1 1.3e-10 41.0 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|330508445|ref|YP_004384873.1| - 0.068 11.6 0.0 0.43 9.0 0.0 2.1 2 1 1 3 3 3 0 Aminopeptidase I zinc metalloprotease (M18) EnY2 PF10163.4 gi|330508445|ref|YP_004384873.1| - 0.083 12.8 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcription factor e(y)2 Usp PF00582.21 gi|330508446|ref|YP_004384874.1| - 1.5e-32 112.6 5.1 1.7e-32 112.4 3.5 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|330508446|ref|YP_004384874.1| - 0.00094 18.5 0.7 0.0017 17.7 0.3 1.5 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Redoxin PF08534.5 gi|330508446|ref|YP_004384874.1| - 0.018 14.6 0.2 0.023 14.2 0.1 1.2 1 0 0 1 1 1 0 Redoxin PsbW PF07123.7 gi|330508446|ref|YP_004384874.1| - 0.042 13.8 0.9 0.066 13.2 0.6 1.4 1 1 0 1 1 1 0 Photosystem II reaction centre W protein (PsbW) Toprim_3 PF13362.1 gi|330508446|ref|YP_004384874.1| - 0.06 13.5 1.0 0.48 10.7 0.1 2.3 1 1 1 2 2 2 0 Toprim domain PGM_PMM_I PF02878.11 gi|330508446|ref|YP_004384874.1| - 0.063 12.7 0.5 0.3 10.5 0.0 1.9 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Toprim_4 PF13662.1 gi|330508446|ref|YP_004384874.1| - 0.07 13.1 3.0 0.24 11.4 0.1 2.4 1 1 1 2 2 2 0 Toprim domain GAD PF02938.9 gi|330508446|ref|YP_004384874.1| - 0.081 13.0 1.0 3 8.0 0.1 2.1 1 1 1 2 2 2 0 GAD domain DUF3606 PF12244.3 gi|330508446|ref|YP_004384874.1| - 0.63 9.7 3.0 0.34 10.5 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3606) AIRC PF00731.15 gi|330508447|ref|YP_004384875.1| - 8e-44 148.5 0.5 8.8e-44 148.4 0.3 1.0 1 0 0 1 1 1 1 AIR carboxylase CM_2 PF01817.16 gi|330508448|ref|YP_004384876.1| - 2.6e-19 69.0 4.0 2.9e-19 68.9 2.8 1.0 1 0 0 1 1 1 1 Chorismate mutase type II GHMP_kinases_N PF00288.21 gi|330508449|ref|YP_004384877.1| - 3.6e-10 39.7 2.5 3.6e-10 39.7 1.8 2.1 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|330508449|ref|YP_004384877.1| - 0.0033 17.5 0.5 0.0085 16.2 0.1 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal BamHI PF02923.10 gi|330508450|ref|YP_004384878.1| - 0.088 12.7 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease BamHI DAO PF01266.19 gi|330508451|ref|YP_004384879.1| - 1.4e-09 37.3 4.0 4.3e-06 25.8 0.0 2.6 1 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|330508451|ref|YP_004384879.1| - 1.3e-08 34.3 3.8 1.9e-07 30.5 2.6 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|330508451|ref|YP_004384879.1| - 8.1e-08 31.3 0.4 1.2e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|330508451|ref|YP_004384879.1| - 1.2e-07 30.9 0.1 4.4e-07 29.1 0.0 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein HI0933_like PF03486.9 gi|330508451|ref|YP_004384879.1| - 3e-06 25.9 1.1 5.1e-06 25.2 0.8 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|330508451|ref|YP_004384879.1| - 8.8e-06 25.0 0.3 0.00043 19.4 0.1 2.3 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|330508451|ref|YP_004384879.1| - 2.1e-05 23.5 0.9 2.1e-05 23.5 0.6 2.3 2 1 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|330508451|ref|YP_004384879.1| - 0.00019 20.4 1.3 0.00019 20.4 0.9 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|330508451|ref|YP_004384879.1| - 0.0011 19.0 0.1 0.0025 17.8 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|330508451|ref|YP_004384879.1| - 0.0019 17.3 1.6 0.016 14.3 0.2 2.6 3 0 0 3 3 3 1 Thi4 family Pyr_redox_2 PF07992.9 gi|330508451|ref|YP_004384879.1| - 0.0027 17.6 0.6 0.0051 16.7 0.4 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DUF1699 PF08004.6 gi|330508452|ref|YP_004384880.1| - 8e-59 196.8 0.0 9e-59 196.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) PYC_OADA PF02436.13 gi|330508453|ref|YP_004384881.1| - 1.3e-60 204.2 0.6 2.2e-60 203.4 0.4 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|330508453|ref|YP_004384881.1| - 8.5e-47 159.8 0.0 1.2e-46 159.2 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|330508453|ref|YP_004384881.1| - 6.4e-20 70.5 2.6 1.4e-19 69.5 1.8 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|330508453|ref|YP_004384881.1| - 2.3e-10 39.9 1.6 2.4e-05 23.9 0.0 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|330508453|ref|YP_004384881.1| - 8.9e-07 28.3 1.5 0.0024 17.0 0.1 2.3 1 1 1 2 2 2 2 HlyD family secretion protein HlyD PF00529.15 gi|330508453|ref|YP_004384881.1| - 1.5e-06 27.7 0.9 0.025 13.9 0.1 2.4 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|330508453|ref|YP_004384881.1| - 3.9e-05 23.9 0.4 0.16 12.3 0.0 2.6 2 0 0 2 2 2 2 HlyD family secretion protein DUF2118 PF09891.4 gi|330508453|ref|YP_004384881.1| - 0.007 16.0 0.9 0.02 14.6 0.2 2.0 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2118) YqfD PF06898.6 gi|330508453|ref|YP_004384881.1| - 0.0079 14.9 2.2 0.031 12.9 0.6 2.1 1 1 1 2 2 2 1 Putative stage IV sporulation protein YqfD GCV_H PF01597.14 gi|330508453|ref|YP_004384881.1| - 0.011 15.4 0.2 0.046 13.4 0.1 2.0 2 0 0 2 2 2 0 Glycine cleavage H-protein PTS_EIIA_1 PF00358.15 gi|330508453|ref|YP_004384881.1| - 0.011 15.2 0.0 0.53 9.8 0.0 2.4 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Amidohydro_3 PF07969.6 gi|330508453|ref|YP_004384881.1| - 0.028 13.6 0.0 0.08 12.1 0.0 1.7 1 1 0 1 1 1 0 Amidohydrolase family RnfC_N PF13375.1 gi|330508453|ref|YP_004384881.1| - 0.032 13.9 0.2 0.095 12.4 0.1 1.7 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain AA_kinase PF00696.23 gi|330508454|ref|YP_004384882.1| - 1.1e-36 126.6 1.2 1.2e-36 126.4 0.9 1.0 1 0 0 1 1 1 1 Amino acid kinase family NifU_N PF01592.11 gi|330508455|ref|YP_004384883.1| - 3.1e-47 159.6 0.0 3.8e-47 159.3 0.0 1.1 1 0 0 1 1 1 1 NifU-like N terminal domain Cytochrom_B561 PF03188.11 gi|330508456|ref|YP_004384884.1| - 4.5e-07 29.7 6.0 8.4e-07 28.8 4.1 1.5 1 0 0 1 1 1 1 Eukaryotic cytochrome b561 DUF2306 PF10067.4 gi|330508456|ref|YP_004384884.1| - 0.00051 20.1 13.7 0.038 14.0 0.4 3.0 1 1 2 3 3 3 3 Predicted membrane protein (DUF2306) Ferric_reduct PF01794.14 gi|330508456|ref|YP_004384884.1| - 0.0014 18.7 10.8 0.0077 16.3 0.6 2.6 1 1 0 2 2 2 1 Ferric reductase like transmembrane component DUF4079 PF13301.1 gi|330508456|ref|YP_004384884.1| - 0.0024 17.8 12.0 0.048 13.6 8.1 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF4079) PepSY_TM_1 PF13172.1 gi|330508456|ref|YP_004384884.1| - 0.011 15.4 15.4 0.44 10.3 0.0 4.7 4 0 0 4 4 4 0 PepSY-associated TM helix PepSY_TM_3 PF13706.1 gi|330508456|ref|YP_004384884.1| - 0.015 14.6 1.8 0.015 14.6 1.2 4.8 5 0 0 5 5 5 0 PepSY-associated TM helix DUF2231 PF09990.4 gi|330508456|ref|YP_004384884.1| - 0.018 15.3 12.5 0.073 13.4 1.0 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) Acyl_transf_3 PF01757.17 gi|330508456|ref|YP_004384884.1| - 0.037 12.8 10.5 0.063 12.1 7.3 1.4 1 1 0 1 1 1 0 Acyltransferase family DUF998 PF06197.8 gi|330508456|ref|YP_004384884.1| - 0.043 13.1 15.6 0.056 12.7 9.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF998) DUF4405 PF14358.1 gi|330508456|ref|YP_004384884.1| - 0.056 13.5 10.5 0.96 9.6 0.6 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) MMPL PF03176.10 gi|330508456|ref|YP_004384884.1| - 0.091 11.4 1.4 0.13 10.9 0.9 1.3 1 0 0 1 1 1 0 MMPL family ResB PF05140.9 gi|330508456|ref|YP_004384884.1| - 0.095 11.2 1.5 0.14 10.6 1.1 1.2 1 0 0 1 1 1 0 ResB-like family PepSY_TM_2 PF13703.1 gi|330508456|ref|YP_004384884.1| - 0.28 11.3 21.9 0.46 10.6 1.6 4.1 4 1 0 4 4 4 0 PepSY-associated TM helix EamA PF00892.15 gi|330508456|ref|YP_004384884.1| - 0.38 10.7 8.5 0.071 13.1 2.4 2.2 1 1 0 2 2 2 0 EamA-like transporter family Cytochrom_B_N PF00033.14 gi|330508456|ref|YP_004384884.1| - 0.39 10.0 14.9 18 4.6 10.3 2.7 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Tetraspannin PF00335.15 gi|330508456|ref|YP_004384884.1| - 0.48 9.6 6.3 3.5 6.8 0.2 2.1 1 1 1 2 2 2 0 Tetraspanin family DUF420 PF04238.7 gi|330508456|ref|YP_004384884.1| - 0.51 10.2 7.8 0.23 11.4 0.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF420) DUF1230 PF06799.6 gi|330508456|ref|YP_004384884.1| - 0.72 9.7 3.8 0.27 11.1 0.2 1.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1230) VIT1 PF01988.14 gi|330508456|ref|YP_004384884.1| - 0.89 9.0 6.3 0.19 11.1 1.5 1.9 1 1 1 2 2 2 0 VIT family Claudin_2 PF13903.1 gi|330508456|ref|YP_004384884.1| - 1.7 8.3 6.8 2.8 7.6 0.4 2.2 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF3040 PF11239.3 gi|330508456|ref|YP_004384884.1| - 7.8 6.6 6.5 2.4 8.2 1.4 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3040) POR_N PF01855.14 gi|330508457|ref|YP_004384885.1| - 7.3e-49 166.3 0.1 1e-48 165.8 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|330508457|ref|YP_004384885.1| - 1.5e-34 119.4 0.0 2.7e-34 118.5 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|330508457|ref|YP_004384885.1| - 2.2e-07 30.5 1.5 3.9e-07 29.7 1.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|330508458|ref|YP_004384886.1| - 1.8e-30 105.5 0.0 2.6e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|330508458|ref|YP_004384886.1| - 8.1e-06 25.6 0.1 1.5e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Rubredoxin PF00301.15 gi|330508459|ref|YP_004384887.1| - 5.1e-26 90.2 2.1 5.6e-26 90.1 1.4 1.0 1 0 0 1 1 1 1 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|330508459|ref|YP_004384887.1| - 0.00051 19.3 2.1 0.16 11.2 0.1 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding DUF2296 PF10058.4 gi|330508459|ref|YP_004384887.1| - 0.0094 15.6 0.4 0.43 10.3 0.0 2.1 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) zf-ribbon_3 PF13248.1 gi|330508459|ref|YP_004384887.1| - 0.011 14.9 1.2 0.56 9.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|330508459|ref|YP_004384887.1| - 0.017 14.2 4.3 0.032 13.3 0.3 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others A2L_zn_ribbon PF08792.5 gi|330508459|ref|YP_004384887.1| - 0.026 13.9 2.5 1.9 8.0 0.3 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|330508459|ref|YP_004384887.1| - 0.029 14.3 1.4 1.4 8.9 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|330508459|ref|YP_004384887.1| - 0.037 13.5 0.8 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|330508459|ref|YP_004384887.1| - 0.061 12.9 0.5 6.8 6.4 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger DZR PF12773.2 gi|330508459|ref|YP_004384887.1| - 0.12 12.2 0.2 9.2 6.1 0.0 2.1 2 0 0 2 2 2 0 Double zinc ribbon zf-H2C2_2 PF13465.1 gi|330508459|ref|YP_004384887.1| - 0.12 12.7 1.2 7.6 7.0 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain OrfB_Zn_ribbon PF07282.6 gi|330508459|ref|YP_004384887.1| - 0.13 11.9 0.2 13 5.5 0.0 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-ISL3 PF14690.1 gi|330508459|ref|YP_004384887.1| - 0.13 12.3 0.8 3.1 7.9 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|330508459|ref|YP_004384887.1| - 0.19 11.4 4.1 1 9.0 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-C2H2_3 PF13878.1 gi|330508459|ref|YP_004384887.1| - 0.22 11.1 1.8 3.7 7.2 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-C2H2 PF00096.21 gi|330508459|ref|YP_004384887.1| - 0.33 11.3 2.6 9.4 6.8 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF1610 PF07754.6 gi|330508459|ref|YP_004384887.1| - 0.33 11.0 5.0 2.1 8.5 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TFIIS_C PF01096.13 gi|330508459|ref|YP_004384887.1| - 0.36 10.5 2.5 12 5.6 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|330508459|ref|YP_004384887.1| - 0.65 9.7 3.3 3.8 7.2 0.2 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit ADK_lid PF05191.9 gi|330508459|ref|YP_004384887.1| - 0.96 9.1 5.5 19 5.0 3.8 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid PHD PF00628.24 gi|330508459|ref|YP_004384887.1| - 1.2 8.8 3.8 1.6 8.4 0.2 2.0 1 1 2 3 3 3 0 PHD-finger UPF0547 PF10571.4 gi|330508459|ref|YP_004384887.1| - 3.6 7.3 5.4 4.9 6.9 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ferritin PF00210.19 gi|330508460|ref|YP_004384888.1| - 5.6e-37 126.6 1.5 7.1e-37 126.3 1.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF3906 PF13046.1 gi|330508460|ref|YP_004384888.1| - 0.0055 16.2 0.0 0.03 13.9 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3906) Glyco_hydro_44 PF12891.2 gi|330508460|ref|YP_004384888.1| - 0.012 15.1 0.3 0.41 10.1 0.0 2.1 1 1 1 2 2 2 0 Glycoside hydrolase family 44 Lipoprotein_10 PF03202.8 gi|330508460|ref|YP_004384888.1| - 0.06 13.3 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative mycoplasma lipoprotein, C-terminal region Lipoprotein_15 PF03640.10 gi|330508461|ref|YP_004384889.1| - 8.6e-21 73.1 0.6 1.6e-10 40.2 0.0 2.1 2 0 0 2 2 2 2 Secreted repeat of unknown function TGT PF01702.13 gi|330508462|ref|YP_004384890.1| - 1.3e-86 289.8 0.0 1.6e-86 289.4 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF165 PF02592.10 gi|330508463|ref|YP_004384891.1| - 7.3e-31 107.3 8.3 1.4e-30 106.4 5.8 1.5 1 0 0 1 1 1 1 Uncharacterized ACR, YhhQ family COG1738 SPW PF03779.9 gi|330508463|ref|YP_004384891.1| - 0.65 9.4 4.7 1 8.8 1.4 2.4 2 0 0 2 2 2 0 SPW repeat GtrA PF04138.9 gi|330508463|ref|YP_004384891.1| - 3.4 7.6 18.1 0.044 13.7 2.9 2.2 1 1 0 2 2 2 0 GtrA-like protein Methyltransf_18 PF12847.2 gi|330508464|ref|YP_004384892.1| - 4.2e-13 49.8 0.0 8e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330508464|ref|YP_004384892.1| - 1.6e-09 37.5 0.0 2.4e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|330508464|ref|YP_004384892.1| - 2.2e-09 36.7 0.0 3.2e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.10 gi|330508464|ref|YP_004384892.1| - 5.5e-08 32.1 0.0 8.2e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.7 gi|330508464|ref|YP_004384892.1| - 1.8e-07 31.5 0.0 3.7e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330508464|ref|YP_004384892.1| - 3.1e-07 30.2 0.0 5.4e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330508464|ref|YP_004384892.1| - 1.2e-06 28.5 0.0 1.7e-06 28.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330508464|ref|YP_004384892.1| - 2.9e-06 27.6 0.0 5.8e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330508464|ref|YP_004384892.1| - 2.1e-05 24.8 0.0 4.1e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|330508464|ref|YP_004384892.1| - 0.00015 20.7 0.0 0.00019 20.3 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase MTS PF05175.9 gi|330508464|ref|YP_004384892.1| - 0.00023 20.5 0.0 0.00041 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|330508464|ref|YP_004384892.1| - 0.0015 17.7 0.0 0.0023 17.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Cons_hypoth95 PF03602.10 gi|330508464|ref|YP_004384892.1| - 0.0016 17.8 0.0 0.0033 16.8 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.6 gi|330508464|ref|YP_004384892.1| - 0.0021 16.7 0.0 0.0036 16.0 0.0 1.3 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase PrmA PF06325.8 gi|330508464|ref|YP_004384892.1| - 0.0025 17.0 0.5 0.0052 15.9 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|330508464|ref|YP_004384892.1| - 0.0037 16.8 0.0 0.0059 16.2 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein TehB PF03848.9 gi|330508464|ref|YP_004384892.1| - 0.004 16.3 0.0 0.0063 15.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.12 gi|330508464|ref|YP_004384892.1| - 0.0071 15.4 0.0 0.013 14.5 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_16 PF10294.4 gi|330508464|ref|YP_004384892.1| - 0.0073 15.7 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase DUF938 PF06080.7 gi|330508464|ref|YP_004384892.1| - 0.0075 15.8 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) CMAS PF02353.15 gi|330508464|ref|YP_004384892.1| - 0.01 14.9 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF995 PF06191.7 gi|330508464|ref|YP_004384892.1| - 0.011 15.1 0.2 0.02 14.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF995) PCMT PF01135.14 gi|330508464|ref|YP_004384892.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|330508464|ref|YP_004384892.1| - 0.018 14.4 0.0 0.026 13.8 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.5 gi|330508464|ref|YP_004384892.1| - 0.046 13.2 0.0 0.069 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.1 gi|330508464|ref|YP_004384892.1| - 0.049 13.3 0.0 0.096 12.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Gate PF07670.9 gi|330508465|ref|YP_004384893.1| - 2.7e-08 33.6 20.3 4.3e-07 29.8 1.5 2.7 2 2 0 2 2 2 2 Nucleoside recognition TraW_N PF12477.3 gi|330508466|ref|YP_004384894.1| - 7 6.7 6.1 0.53 10.2 0.6 1.9 2 0 0 2 2 2 0 Sex factor F TraW protein N terminal Lyase_1 PF00206.15 gi|330508467|ref|YP_004384895.1| - 3.5e-49 167.6 0.1 4.9e-49 167.2 0.1 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|330508467|ref|YP_004384895.1| - 7e-26 90.0 0.2 1.5e-25 89.0 0.1 1.6 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C2 PF14698.1 gi|330508467|ref|YP_004384895.1| - 0.097 12.7 0.1 0.84 9.7 0.0 2.5 1 1 1 2 2 2 0 Argininosuccinate lyase C-terminal Lactamase_B PF00753.22 gi|330508468|ref|YP_004384896.1| - 1.8e-16 60.3 1.1 8.9e-15 54.8 0.8 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|330508468|ref|YP_004384896.1| - 0.00013 21.6 0.1 0.00018 21.2 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain ACT PF01842.20 gi|330508468|ref|YP_004384896.1| - 0.0019 17.6 0.0 0.0037 16.7 0.0 1.5 1 0 0 1 1 1 1 ACT domain Lactamase_B_2 PF12706.2 gi|330508468|ref|YP_004384896.1| - 0.0027 17.3 0.1 0.0039 16.7 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Prok-JAB PF14464.1 gi|330508468|ref|YP_004384896.1| - 0.019 14.5 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic homologs of the JAB domain Tachykinin PF02202.11 gi|330508468|ref|YP_004384896.1| - 0.093 12.4 0.1 0.33 10.7 0.0 2.0 2 0 0 2 2 2 0 Tachykinin family Methyltransf_26 PF13659.1 gi|330508469|ref|YP_004384897.1| - 5.7e-13 48.9 0.0 1.9e-12 47.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|330508469|ref|YP_004384897.1| - 2.4e-06 27.8 0.0 5.7e-05 23.4 0.0 2.6 2 0 0 2 2 2 1 Eco57I restriction-modification methylase N6_Mtase PF02384.11 gi|330508469|ref|YP_004384897.1| - 4e-05 22.8 0.4 1.4 7.9 0.0 4.7 3 2 0 4 4 4 1 N-6 DNA Methylase UPF0020 PF01170.13 gi|330508469|ref|YP_004384897.1| - 0.17 11.4 0.1 0.54 9.8 0.0 1.8 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Fic_N PF13784.1 gi|330508470|ref|YP_004384898.1| - 4.2e-25 87.4 0.0 9.4e-25 86.3 0.0 1.6 1 0 0 1 1 1 1 Fic/DOC family N-terminal Fic PF02661.13 gi|330508470|ref|YP_004384898.1| - 2.1e-17 63.6 0.0 5e-17 62.3 0.0 1.7 1 0 0 1 1 1 1 Fic/DOC family TrmB PF01978.14 gi|330508470|ref|YP_004384898.1| - 0.0082 15.8 0.0 0.022 14.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|330508470|ref|YP_004384898.1| - 0.018 14.4 0.0 0.039 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|330508470|ref|YP_004384898.1| - 0.075 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 MarR family PLDc_2 PF13091.1 gi|330508471|ref|YP_004384899.1| - 1.3e-21 76.6 0.0 1e-18 67.2 0.0 2.6 2 0 0 2 2 2 2 PLD-like domain Helicase_C PF00271.26 gi|330508471|ref|YP_004384899.1| - 8e-20 70.4 0.0 2e-19 69.2 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|330508471|ref|YP_004384899.1| - 1.4e-14 53.6 0.1 4.5e-10 38.7 0.0 2.4 1 1 1 2 2 2 2 SNF2 family N-terminal domain DEAD PF00270.24 gi|330508471|ref|YP_004384899.1| - 4.9e-07 29.3 0.2 0.19 11.2 0.0 3.4 2 1 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|330508471|ref|YP_004384899.1| - 3.8e-06 26.8 0.0 0.0019 18.0 0.0 2.7 1 1 1 2 2 2 2 Type III restriction enzyme, res subunit Bac_DnaA PF00308.13 gi|330508471|ref|YP_004384899.1| - 0.00059 19.5 0.5 0.0017 18.0 0.0 2.0 2 0 0 2 2 2 1 Bacterial dnaA protein Flavi_DEAD PF07652.9 gi|330508471|ref|YP_004384899.1| - 0.00076 19.2 0.1 0.048 13.4 0.1 2.4 1 1 0 1 1 1 1 Flavivirus DEAD domain IstB_IS21 PF01695.12 gi|330508471|ref|YP_004384899.1| - 0.0038 16.6 0.1 0.17 11.2 0.1 3.0 2 1 0 2 2 2 1 IstB-like ATP binding protein DUF533 PF04391.7 gi|330508471|ref|YP_004384899.1| - 0.012 14.9 0.1 0.037 13.4 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF533) PLDc PF00614.17 gi|330508471|ref|YP_004384899.1| - 0.023 14.4 0.0 0.05 13.4 0.0 1.6 1 0 0 1 1 1 0 Phospholipase D Active site motif AAA_22 PF13401.1 gi|330508471|ref|YP_004384899.1| - 0.023 14.8 0.9 0.23 11.5 0.0 3.1 3 1 1 4 4 4 0 AAA domain AAA_30 PF13604.1 gi|330508471|ref|YP_004384899.1| - 0.042 13.4 0.0 0.089 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain TruB_N PF01509.13 gi|330508472|ref|YP_004384900.1| - 1.4e-24 86.9 0.9 5.2e-20 72.1 0.6 3.2 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|330508472|ref|YP_004384900.1| - 5.4e-17 61.2 0.1 9.9e-17 60.4 0.1 1.5 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.7 gi|330508472|ref|YP_004384900.1| - 2.3e-07 30.6 0.0 4.3e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain Cytidylate_kin2 PF13189.1 gi|330508473|ref|YP_004384901.1| - 1.7e-22 80.2 0.3 1.1e-20 74.2 0.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|330508473|ref|YP_004384901.1| - 1.8e-10 41.2 0.2 2.6e-10 40.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|330508473|ref|YP_004384901.1| - 2.7e-10 41.1 0.2 1e-09 39.2 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|330508473|ref|YP_004384901.1| - 6.3e-07 29.4 0.1 2.6e-06 27.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.13 gi|330508473|ref|YP_004384901.1| - 5.1e-05 22.7 0.3 6.5e-05 22.4 0.2 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA PF00004.24 gi|330508473|ref|YP_004384901.1| - 0.00012 22.2 0.0 0.00017 21.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKI PF01202.17 gi|330508473|ref|YP_004384901.1| - 0.00033 20.5 1.1 0.013 15.3 0.8 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.1 gi|330508473|ref|YP_004384901.1| - 0.00072 19.4 0.4 0.0078 16.0 0.3 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|330508473|ref|YP_004384901.1| - 0.00087 19.1 0.1 0.0013 18.6 0.1 1.6 1 1 0 1 1 1 1 Adenylate kinase PRK PF00485.13 gi|330508473|ref|YP_004384901.1| - 0.0086 15.6 0.1 0.022 14.3 0.0 1.6 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family CPT PF07931.7 gi|330508473|ref|YP_004384901.1| - 0.026 14.1 0.1 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_19 PF13245.1 gi|330508473|ref|YP_004384901.1| - 0.028 14.1 0.0 0.066 12.9 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain DUF106 PF01956.11 gi|330508474|ref|YP_004384902.1| - 7.5e-38 129.7 7.5 9.2e-38 129.4 5.2 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|330508474|ref|YP_004384902.1| - 0.0015 18.2 9.0 0.0015 18.2 6.3 1.8 1 1 1 2 2 2 1 60Kd inner membrane protein DUF3180 PF11377.3 gi|330508474|ref|YP_004384902.1| - 0.0063 16.3 0.1 0.01 15.6 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3180) DUF4199 PF13858.1 gi|330508474|ref|YP_004384902.1| - 0.031 14.2 11.1 0.65 9.9 4.9 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) OmpH PF03938.9 gi|330508474|ref|YP_004384902.1| - 0.18 11.7 8.1 0.26 11.2 5.6 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) SecY PF00344.15 gi|330508475|ref|YP_004384903.1| - 1e-95 320.6 25.8 1.3e-95 320.3 17.9 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|330508475|ref|YP_004384903.1| - 4.3e-11 42.1 4.4 1.1e-10 40.7 3.1 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Flocculin_t3 PF13928.1 gi|330508475|ref|YP_004384903.1| - 0.24 11.5 6.6 0.48 10.6 4.6 1.4 1 0 0 1 1 1 0 Flocculin type 3 repeat FAM163 PF15069.1 gi|330508475|ref|YP_004384903.1| - 7.3 7.1 5.6 18 5.8 3.9 1.6 1 0 0 1 1 1 0 FAM163 family Ribosomal_L18e PF00828.14 gi|330508476|ref|YP_004384904.1| - 3.1e-22 79.3 3.7 5.1e-22 78.6 2.6 1.3 1 1 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|330508477|ref|YP_004384905.1| - 2.6e-17 62.1 0.1 4.7e-17 61.3 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e UPF0052 PF01933.13 gi|330508477|ref|YP_004384905.1| - 0.11 11.8 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0052 Ribosomal_S5 PF00333.15 gi|330508478|ref|YP_004384906.1| - 3.5e-27 93.9 2.3 1.1e-26 92.3 1.7 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|330508478|ref|YP_004384906.1| - 3e-24 84.0 1.0 4.7e-24 83.4 0.7 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|330508479|ref|YP_004384907.1| - 8.9e-24 83.9 0.1 1.2e-23 83.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|330508480|ref|YP_004384908.1| - 9.7e-54 181.1 6.3 1.2e-53 180.8 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.13 gi|330508481|ref|YP_004384909.1| - 5.8e-35 119.6 0.2 7e-35 119.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 DUF4530 PF15039.1 gi|330508481|ref|YP_004384909.1| - 0.029 14.2 0.0 0.039 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4530) Ribosomal_L6 PF00347.18 gi|330508482|ref|YP_004384910.1| - 3e-31 107.7 3.8 1.4e-19 70.3 0.6 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 KH_1 PF00013.24 gi|330508482|ref|YP_004384910.1| - 0.16 11.6 4.0 4.8 6.8 0.6 3.3 2 1 1 3 3 3 0 KH domain Ribosomal_S8 PF00410.14 gi|330508483|ref|YP_004384911.1| - 2.5e-26 92.0 0.0 3.2e-26 91.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|330508484|ref|YP_004384912.1| - 2.5e-18 65.1 5.4 2.6e-18 65.1 3.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-P11 PF03854.9 gi|330508484|ref|YP_004384912.1| - 0.0043 16.5 0.9 0.0052 16.2 0.6 1.1 1 0 0 1 1 1 1 P-11 zinc finger DUF2296 PF10058.4 gi|330508484|ref|YP_004384912.1| - 0.008 15.8 3.5 0.015 15.0 2.4 1.4 1 1 0 1 1 1 1 Predicted integral membrane metal-binding protein (DUF2296) DUF4428 PF14471.1 gi|330508484|ref|YP_004384912.1| - 0.013 15.2 1.3 0.28 10.9 0.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) Ribosomal_L37ae PF01780.14 gi|330508484|ref|YP_004384912.1| - 0.021 14.6 0.9 0.025 14.4 0.6 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-FPG_IleRS PF06827.9 gi|330508484|ref|YP_004384912.1| - 0.025 14.2 2.4 0.18 11.4 0.1 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS A2L_zn_ribbon PF08792.5 gi|330508484|ref|YP_004384912.1| - 0.029 13.8 2.1 0.045 13.2 1.5 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain FYVE_2 PF02318.11 gi|330508484|ref|YP_004384912.1| - 0.035 14.0 0.3 0.035 13.9 0.2 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger DZR PF12773.2 gi|330508484|ref|YP_004384912.1| - 0.064 13.0 0.8 0.11 12.3 0.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF2318 PF10080.4 gi|330508484|ref|YP_004384912.1| - 0.086 12.6 0.4 0.085 12.6 0.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DUF1451 PF07295.6 gi|330508484|ref|YP_004384912.1| - 0.11 12.2 0.2 0.13 12.0 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DUF2039 PF10217.4 gi|330508484|ref|YP_004384912.1| - 0.23 11.4 1.8 11 6.0 0.3 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) Rsm1 PF08600.5 gi|330508484|ref|YP_004384912.1| - 0.76 9.6 4.7 5.7 6.8 0.3 2.1 1 1 1 2 2 2 0 Rsm1-like Ribosomal_L5_C PF00673.16 gi|330508485|ref|YP_004384913.1| - 2.8e-24 84.6 0.0 4.4e-24 84.0 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|330508485|ref|YP_004384913.1| - 1.2e-14 53.8 0.3 2e-14 53.0 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|330508486|ref|YP_004384914.1| - 2.3e-19 68.8 0.0 5.3e-19 67.6 0.0 1.6 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|330508486|ref|YP_004384914.1| - 3.1e-12 46.1 2.0 5.2e-12 45.4 1.4 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.24 gi|330508486|ref|YP_004384914.1| - 1.9e-07 30.4 1.0 4.5e-07 29.3 0.7 1.7 1 0 0 1 1 1 1 KOW motif S4 PF01479.20 gi|330508486|ref|YP_004384914.1| - 0.0034 16.7 0.1 0.0057 16.0 0.0 1.4 1 0 0 1 1 1 1 S4 domain DSX_dimer PF08828.5 gi|330508486|ref|YP_004384914.1| - 0.0047 16.4 0.1 0.01 15.3 0.1 1.6 1 0 0 1 1 1 1 Doublesex dimerisation domain S4_2 PF13275.1 gi|330508486|ref|YP_004384914.1| - 0.034 13.7 0.0 0.077 12.5 0.0 1.6 1 0 0 1 1 1 0 S4 domain KOW PF00467.24 gi|330508487|ref|YP_004384915.1| - 9.5e-07 28.3 2.1 9.5e-07 28.3 1.5 1.6 2 0 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.14 gi|330508488|ref|YP_004384916.1| - 7.4e-39 132.2 0.8 8.3e-39 132.1 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L19 PF01245.15 gi|330508488|ref|YP_004384916.1| - 0.068 12.9 0.2 0.1 12.4 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L19 Ribosomal_S17 PF00366.15 gi|330508489|ref|YP_004384917.1| - 1.5e-26 92.2 2.9 1.8e-26 91.9 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|330508490|ref|YP_004384918.1| - 3.9e-28 96.9 0.1 4.4e-28 96.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|330508491|ref|YP_004384919.1| - 1.5e-18 66.1 0.5 1.7e-18 66.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein MRP-L47 PF06984.8 gi|330508491|ref|YP_004384919.1| - 0.0074 16.1 0.2 0.026 14.4 0.1 1.9 1 1 0 1 1 1 1 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) Fer4_14 PF13394.1 gi|330508491|ref|YP_004384919.1| - 0.12 12.4 0.0 0.13 12.2 0.0 1.0 1 0 0 1 1 1 0 4Fe-4S single cluster domain Toxin_36 PF10550.4 gi|330508491|ref|YP_004384919.1| - 0.4 11.9 3.3 0.73 11.1 0.3 2.2 2 0 0 2 2 2 0 Conantokin-G mollusc-toxin Ribosomal_S3_C PF00189.15 gi|330508492|ref|YP_004384920.1| - 1.7e-16 60.1 0.1 2.8e-16 59.4 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|330508492|ref|YP_004384920.1| - 1.8e-14 53.0 0.0 3.2e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|330508492|ref|YP_004384920.1| - 0.00073 19.1 0.5 0.0025 17.3 0.1 2.1 3 0 0 3 3 3 1 KH domain KH_4 PF13083.1 gi|330508492|ref|YP_004384920.1| - 0.11 12.1 0.1 0.24 11.0 0.1 1.5 1 0 0 1 1 1 0 KH domain KH_3 PF13014.1 gi|330508492|ref|YP_004384920.1| - 1 9.0 5.3 0.28 10.8 0.7 2.3 3 0 0 3 3 3 0 KH domain Ribosomal_L22 PF00237.14 gi|330508493|ref|YP_004384921.1| - 1.8e-32 111.3 0.0 2.1e-32 111.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|330508494|ref|YP_004384922.1| - 1.7e-25 88.4 0.4 2.5e-25 87.8 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|330508495|ref|YP_004384923.1| - 3.7e-46 156.1 0.2 2.6e-45 153.3 0.1 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|330508495|ref|YP_004384923.1| - 1.8e-13 50.2 0.0 3.9e-13 49.1 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|330508496|ref|YP_004384924.1| - 6.4e-17 61.2 0.3 7.8e-17 61.0 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L23 SapB_1 PF05184.10 gi|330508496|ref|YP_004384924.1| - 0.0092 15.7 0.3 0.063 13.1 0.0 2.1 1 1 1 2 2 2 1 Saposin-like type B, region 1 DUF4252 PF14060.1 gi|330508496|ref|YP_004384924.1| - 0.093 12.2 0.4 0.11 12.0 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4252) P2 PF07194.6 gi|330508496|ref|YP_004384924.1| - 0.12 12.2 0.2 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 P2 response regulator binding domain Ribosomal_L4 PF00573.17 gi|330508497|ref|YP_004384925.1| - 1.4e-44 151.8 0.6 1.6e-44 151.6 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|330508498|ref|YP_004384926.1| - 2e-77 260.1 0.0 2.4e-77 259.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|330508499|ref|YP_004384927.1| - 4.5e-51 173.9 0.0 5.7e-51 173.5 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|330508499|ref|YP_004384927.1| - 0.00077 19.3 0.0 0.94 9.3 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|330508499|ref|YP_004384927.1| - 0.0083 15.6 0.0 0.039 13.4 0.0 1.9 2 0 0 2 2 2 1 SAM-dependent RNA methyltransferase PIF1 PF05970.9 gi|330508501|ref|YP_004384929.1| - 0.022 13.6 0.0 0.031 13.2 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase OmpH PF03938.9 gi|330508501|ref|YP_004384929.1| - 0.036 14.0 0.7 0.045 13.6 0.5 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) GxGYxYP PF14323.1 gi|330508501|ref|YP_004384929.1| - 0.057 12.1 0.0 0.083 11.5 0.0 1.2 1 0 0 1 1 1 0 GxGYxY sequence motif in domain of unknown function OrfB_IS605 PF01385.14 gi|330508503|ref|YP_004384931.1| - 1.2e-39 136.1 0.0 3.9e-39 134.3 0.0 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330508503|ref|YP_004384931.1| - 2.9e-24 84.4 0.1 7.1e-24 83.2 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330508503|ref|YP_004384931.1| - 9.1e-19 66.5 2.8 3.7e-18 64.5 2.3 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain DZR PF12773.2 gi|330508503|ref|YP_004384931.1| - 0.0046 16.7 0.3 0.0079 15.9 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330508503|ref|YP_004384931.1| - 0.057 12.6 0.1 0.11 11.7 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|330508503|ref|YP_004384931.1| - 0.084 12.6 0.4 0.29 10.9 0.3 1.9 1 0 0 1 1 1 0 Ribosomal protein L37e TF_Zn_Ribbon PF08271.7 gi|330508503|ref|YP_004384931.1| - 0.12 11.7 0.7 0.49 9.7 0.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding YhfH PF14149.1 gi|330508503|ref|YP_004384931.1| - 0.12 12.1 0.4 15 5.4 0.0 2.5 2 0 0 2 2 2 0 YhfH-like protein RecR PF02132.10 gi|330508503|ref|YP_004384931.1| - 0.57 9.6 4.8 3.1 7.3 0.2 2.8 2 1 1 3 3 3 0 RecR protein MatE PF01554.13 gi|330508504|ref|YP_004384932.1| - 7.2e-50 168.7 44.3 2.3e-28 98.8 9.2 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|330508504|ref|YP_004384932.1| - 8.4e-13 48.3 6.3 8.4e-13 48.3 4.3 5.4 3 1 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain UvrB PF12344.3 gi|330508505|ref|YP_004384933.1| - 2.5e-22 78.1 1.6 6.1e-22 76.8 1.1 1.7 1 0 0 1 1 1 1 Ultra-violet resistance protein B ResIII PF04851.10 gi|330508505|ref|YP_004384933.1| - 3.6e-14 53.0 0.0 1.4e-12 47.8 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|330508505|ref|YP_004384933.1| - 4.8e-14 51.9 0.0 1.1e-13 50.8 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|330508505|ref|YP_004384933.1| - 1.9e-07 30.7 0.0 2.6e-05 23.7 0.0 3.1 4 0 0 4 4 4 1 DEAD/DEAH box helicase UVR PF02151.14 gi|330508505|ref|YP_004384933.1| - 1.3e-06 27.7 7.1 4.7e-06 25.9 4.9 2.0 1 0 0 1 1 1 1 UvrB/uvrC motif AAA_19 PF13245.1 gi|330508505|ref|YP_004384933.1| - 0.0051 16.5 0.1 0.067 12.9 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|330508505|ref|YP_004384933.1| - 0.011 15.9 0.1 0.42 10.7 0.0 3.1 3 1 0 3 3 3 0 AAA domain Kinesin PF00225.18 gi|330508505|ref|YP_004384933.1| - 0.022 13.4 0.0 0.04 12.6 0.0 1.4 1 0 0 1 1 1 0 Kinesin motor domain AAA_33 PF13671.1 gi|330508505|ref|YP_004384933.1| - 0.022 14.6 0.0 0.23 11.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain UB2H PF14814.1 gi|330508505|ref|YP_004384933.1| - 0.064 12.9 0.0 0.25 11.0 0.0 2.1 1 1 0 1 1 1 0 Bifunctional transglycosylase second domain DUF2785 PF10978.3 gi|330508505|ref|YP_004384933.1| - 0.11 11.9 0.0 0.41 10.0 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) DUF3333 PF11812.3 gi|330508507|ref|YP_004384935.1| - 0.72 9.8 2.6 1.8 8.5 1.8 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) zf-ribbon_3 PF13248.1 gi|330508508|ref|YP_004384936.1| - 0.0013 17.8 0.6 0.099 11.8 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|330508508|ref|YP_004384936.1| - 0.0015 18.1 0.1 0.0033 17.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.1 gi|330508508|ref|YP_004384936.1| - 0.0024 17.5 3.2 0.0047 16.5 1.4 2.1 2 0 0 2 2 2 1 Nudix N-terminal DZR PF12773.2 gi|330508508|ref|YP_004384936.1| - 0.0042 16.8 0.3 0.0072 16.1 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon Lar_restr_allev PF14354.1 gi|330508508|ref|YP_004384936.1| - 0.0059 16.8 0.1 0.012 15.8 0.1 1.6 1 0 0 1 1 1 1 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|330508508|ref|YP_004384936.1| - 0.02 14.5 0.8 2.4 7.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|330508508|ref|YP_004384936.1| - 0.023 14.4 0.1 0.045 13.5 0.1 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF35_N PF12172.3 gi|330508508|ref|YP_004384936.1| - 0.029 14.2 1.8 1 9.3 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.1 gi|330508508|ref|YP_004384936.1| - 0.041 13.3 0.4 0.37 10.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|330508508|ref|YP_004384936.1| - 0.11 12.2 3.6 4.5 7.0 2.4 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|330508508|ref|YP_004384936.1| - 0.13 11.6 1.7 0.28 10.5 1.2 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|330508508|ref|YP_004384936.1| - 0.17 11.5 0.5 0.32 10.6 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|330508508|ref|YP_004384936.1| - 0.22 11.5 2.3 1.3 9.0 1.8 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|330508508|ref|YP_004384936.1| - 0.29 10.6 3.6 1.4 8.5 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|330508508|ref|YP_004384936.1| - 0.65 9.6 2.2 8.1 6.1 1.5 2.3 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|330508509|ref|YP_004384937.1| - 1.1e-18 66.6 0.4 2.7e-18 65.3 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330508509|ref|YP_004384937.1| - 1.3e-12 47.6 0.1 1.7e-12 47.2 0.1 1.1 1 0 0 1 1 1 1 Probable transposase C1_3 PF07649.7 gi|330508509|ref|YP_004384937.1| - 7.7e-05 22.6 0.8 0.00015 21.7 0.6 1.5 1 0 0 1 1 1 1 C1-like domain DZR PF12773.2 gi|330508509|ref|YP_004384937.1| - 0.007 16.1 1.0 0.007 16.1 0.7 1.7 2 0 0 2 2 2 1 Double zinc ribbon zf-Mss51 PF13824.1 gi|330508509|ref|YP_004384937.1| - 0.014 15.2 2.9 0.19 11.6 2.0 2.3 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.1 gi|330508509|ref|YP_004384937.1| - 0.021 14.0 1.2 3.5 6.9 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|330508509|ref|YP_004384937.1| - 0.044 13.4 0.1 0.088 12.4 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|330508509|ref|YP_004384937.1| - 0.19 11.2 3.3 4.8 6.8 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|330508509|ref|YP_004384937.1| - 0.28 10.9 2.6 0.54 10.0 1.8 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) FeS PF04060.8 gi|330508509|ref|YP_004384937.1| - 0.69 9.5 3.8 7.1 6.2 0.2 2.6 2 0 0 2 2 2 0 Putative Fe-S cluster DUF1610 PF07754.6 gi|330508509|ref|YP_004384937.1| - 2.2 8.4 7.0 11 6.2 4.9 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) PCMT PF01135.14 gi|330508510|ref|YP_004384938.1| - 4.2e-67 225.7 0.0 5.1e-67 225.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|330508510|ref|YP_004384938.1| - 1e-08 35.7 0.0 1.5e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330508510|ref|YP_004384938.1| - 5.9e-08 32.4 0.0 7.4e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330508510|ref|YP_004384938.1| - 2.6e-06 27.4 0.1 4e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|330508510|ref|YP_004384938.1| - 1.5e-05 24.6 0.0 2.2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.15 gi|330508510|ref|YP_004384938.1| - 8.9e-05 21.6 0.0 0.00012 21.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|330508510|ref|YP_004384938.1| - 0.00052 19.1 0.0 0.00064 18.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|330508510|ref|YP_004384938.1| - 0.00088 18.6 0.0 0.0015 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|330508510|ref|YP_004384938.1| - 0.0074 16.7 0.0 0.016 15.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|330508510|ref|YP_004384938.1| - 0.012 14.7 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Fibrillarin PF01269.12 gi|330508510|ref|YP_004384938.1| - 0.017 14.0 0.0 0.026 13.4 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin CMAS PF02353.15 gi|330508510|ref|YP_004384938.1| - 0.018 14.1 0.0 0.026 13.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|330508510|ref|YP_004384938.1| - 0.027 13.5 0.0 0.036 13.0 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase DUF938 PF06080.7 gi|330508510|ref|YP_004384938.1| - 0.082 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Metalloenzyme PF01676.13 gi|330508511|ref|YP_004384939.1| - 3.8e-86 288.5 0.0 4.3e-86 288.3 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.8 gi|330508511|ref|YP_004384939.1| - 2.4e-83 278.8 0.0 3.1e-83 278.5 0.0 1.1 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Phosphodiest PF01663.17 gi|330508511|ref|YP_004384939.1| - 5.5e-06 25.9 0.0 9.5e-06 25.1 0.0 1.5 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|330508511|ref|YP_004384939.1| - 0.0055 16.3 0.0 0.016 14.9 0.0 1.7 1 0 0 1 1 1 1 PglZ domain Peptidase_M20 PF01546.23 gi|330508512|ref|YP_004384940.1| - 1e-34 119.6 0.0 1.5e-34 119.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|330508512|ref|YP_004384940.1| - 2.7e-18 65.7 0.1 7.7e-18 64.2 0.0 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|330508512|ref|YP_004384940.1| - 6.6e-05 22.7 0.0 0.00099 18.8 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.9 gi|330508512|ref|YP_004384940.1| - 0.00095 18.0 0.0 0.041 12.6 0.0 2.4 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase MobB PF03205.9 gi|330508513|ref|YP_004384941.1| - 1.3e-17 63.7 0.4 1.6e-17 63.5 0.3 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|330508513|ref|YP_004384941.1| - 0.00023 21.2 0.2 0.00025 21.0 0.1 1.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|330508513|ref|YP_004384941.1| - 0.00073 20.3 0.2 0.001 19.8 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|330508513|ref|YP_004384941.1| - 0.003 17.5 0.8 0.0045 16.9 0.5 1.4 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|330508513|ref|YP_004384941.1| - 0.0035 16.8 0.3 0.0035 16.8 0.2 1.6 2 1 0 2 2 2 1 FtsK/SpoIIIE family Miro PF08477.8 gi|330508513|ref|YP_004384941.1| - 0.0037 17.7 0.1 0.0062 17.0 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein AAA_18 PF13238.1 gi|330508513|ref|YP_004384941.1| - 0.0094 16.2 0.1 0.012 15.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.18 gi|330508513|ref|YP_004384941.1| - 0.015 15.1 0.2 0.021 14.6 0.1 1.2 1 0 0 1 1 1 0 Dynamin family RNA_helicase PF00910.17 gi|330508513|ref|YP_004384941.1| - 0.015 15.4 0.0 0.051 13.7 0.0 1.8 2 0 0 2 2 2 0 RNA helicase AAA_14 PF13173.1 gi|330508513|ref|YP_004384941.1| - 0.019 14.8 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|330508513|ref|YP_004384941.1| - 0.019 14.8 0.3 0.021 14.8 0.2 1.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|330508513|ref|YP_004384941.1| - 0.022 14.2 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.10 gi|330508513|ref|YP_004384941.1| - 0.023 14.4 0.6 0.031 13.9 0.3 1.3 1 1 0 1 1 1 0 NTPase cobW PF02492.14 gi|330508513|ref|YP_004384941.1| - 0.026 13.9 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|330508513|ref|YP_004384941.1| - 0.033 13.6 0.8 0.048 13.0 0.6 1.8 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|330508513|ref|YP_004384941.1| - 0.039 13.3 0.3 0.056 12.8 0.2 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain ABC_tran PF00005.22 gi|330508513|ref|YP_004384941.1| - 0.039 14.2 0.0 0.049 13.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter CbiA PF01656.18 gi|330508513|ref|YP_004384941.1| - 0.045 13.1 2.6 0.55 9.6 1.8 2.1 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|330508513|ref|YP_004384941.1| - 0.053 13.6 0.1 0.081 13.0 0.1 1.4 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|330508513|ref|YP_004384941.1| - 0.072 11.6 0.3 0.12 10.9 0.2 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class GBP PF02263.14 gi|330508513|ref|YP_004384941.1| - 0.08 11.9 0.1 0.33 9.9 0.0 1.8 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain AAA PF00004.24 gi|330508513|ref|YP_004384941.1| - 0.084 13.0 0.8 0.18 12.0 0.6 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|330508513|ref|YP_004384941.1| - 0.086 12.4 0.3 0.28 10.8 0.1 1.8 2 0 0 2 2 2 0 NACHT domain T2SE PF00437.15 gi|330508513|ref|YP_004384941.1| - 0.11 11.3 0.2 0.18 10.7 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein SBP_bac_3 PF00497.15 gi|330508514|ref|YP_004384942.1| - 2.9e-19 69.2 0.1 4.4e-19 68.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Peripla_BP_6 PF13458.1 gi|330508515|ref|YP_004384943.1| - 1e-51 176.3 0.0 1.2e-51 176.0 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|330508515|ref|YP_004384943.1| - 2.9e-28 98.6 0.0 3.4e-28 98.4 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|330508515|ref|YP_004384943.1| - 1.4e-19 70.0 0.0 7.3e-19 67.7 0.0 2.0 1 1 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.8 gi|330508515|ref|YP_004384943.1| - 0.0013 17.4 0.0 0.0018 16.8 0.0 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein Sulfatase PF00884.18 gi|330508516|ref|YP_004384944.1| - 1.2e-90 303.8 0.1 1.6e-90 303.4 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|330508516|ref|YP_004384944.1| - 1e-06 28.3 0.0 3.8e-06 26.4 0.0 1.7 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|330508516|ref|YP_004384944.1| - 0.061 11.7 0.0 0.093 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Radical_SAM PF04055.16 gi|330508517|ref|YP_004384945.1| - 4.5e-14 52.9 0.0 7.7e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SEC-C PF02810.10 gi|330508517|ref|YP_004384945.1| - 2.5e-11 42.8 6.2 4.9e-11 41.9 4.3 1.5 1 0 0 1 1 1 1 SEC-C motif SPASM PF13186.1 gi|330508517|ref|YP_004384945.1| - 9.8e-10 38.6 0.2 2.4e-09 37.3 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|330508517|ref|YP_004384945.1| - 4.4e-06 26.8 0.0 8.8e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330508517|ref|YP_004384945.1| - 2.4e-05 24.3 0.0 5.4e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Glyoxalase_2 PF12681.2 gi|330508518|ref|YP_004384946.1| - 4e-20 72.4 0.0 4.6e-20 72.2 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|330508518|ref|YP_004384946.1| - 1.8e-10 40.9 0.0 4.8e-10 39.4 0.0 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF4658 PF15555.1 gi|330508519|ref|YP_004384947.1| - 0.062 13.1 0.0 0.095 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4658) tRNA_SAD PF07973.9 gi|330508520|ref|YP_004384948.1| - 2.2e-14 53.0 1.2 3.9e-14 52.2 0.8 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|330508520|ref|YP_004384948.1| - 7.5e-10 37.7 0.0 9.8e-10 37.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) UbiA PF01040.13 gi|330508521|ref|YP_004384949.1| - 5.2e-08 32.4 0.0 6.3e-08 32.1 0.0 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4203 PF13886.1 gi|330508521|ref|YP_004384949.1| - 0.023 14.1 0.1 0.025 14.0 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) Fer4_20 PF14691.1 gi|330508522|ref|YP_004384950.1| - 4.1e-42 142.2 0.4 6.5e-42 141.6 0.3 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|330508522|ref|YP_004384950.1| - 3.3e-19 69.5 6.5 1.7e-16 60.6 4.5 4.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|330508522|ref|YP_004384950.1| - 4.7e-13 49.6 0.6 1e-06 29.0 0.0 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330508522|ref|YP_004384950.1| - 2.8e-12 46.8 2.2 7.1e-06 26.3 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|330508522|ref|YP_004384950.1| - 1.5e-07 31.3 1.9 4.3e-07 29.8 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|330508522|ref|YP_004384950.1| - 1.6e-06 28.3 0.3 0.0026 17.9 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|330508522|ref|YP_004384950.1| - 2.6e-06 27.1 2.9 0.0013 18.3 0.1 2.7 3 0 0 3 3 2 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.12 gi|330508522|ref|YP_004384950.1| - 1.1e-05 24.6 0.5 4.7e-05 22.5 0.1 2.1 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|330508522|ref|YP_004384950.1| - 7.9e-05 21.6 1.8 7.9e-05 21.6 1.3 2.5 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.19 gi|330508522|ref|YP_004384950.1| - 8.2e-05 21.6 2.7 0.00032 19.7 0.3 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|330508522|ref|YP_004384950.1| - 0.00015 20.9 4.7 0.0021 17.2 0.2 2.4 3 0 0 3 3 2 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|330508522|ref|YP_004384950.1| - 0.00017 20.8 0.1 0.051 12.7 0.0 2.7 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|330508522|ref|YP_004384950.1| - 0.00028 19.5 0.7 0.00028 19.5 0.5 2.4 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.17 gi|330508522|ref|YP_004384950.1| - 0.00037 19.4 4.6 0.0011 17.8 0.2 2.8 3 0 0 3 3 3 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|330508522|ref|YP_004384950.1| - 0.00054 19.1 0.9 0.0079 15.3 0.1 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|330508522|ref|YP_004384950.1| - 0.0011 18.3 0.2 0.1 11.9 0.0 2.7 3 0 0 3 3 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|330508522|ref|YP_004384950.1| - 0.0018 18.0 0.2 0.22 11.2 0.0 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_3 PF01494.14 gi|330508522|ref|YP_004384950.1| - 0.0024 16.9 0.4 0.021 13.9 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain F420_oxidored PF03807.12 gi|330508522|ref|YP_004384950.1| - 0.0029 17.9 2.7 0.17 12.3 0.0 3.6 5 0 0 5 5 3 1 NADP oxidoreductase coenzyme F420-dependent ELFV_dehydrog PF00208.16 gi|330508522|ref|YP_004384950.1| - 0.0057 16.2 0.0 0.21 11.1 0.0 2.3 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Shikimate_DH PF01488.15 gi|330508522|ref|YP_004384950.1| - 0.0067 16.5 1.2 0.1 12.6 0.0 2.8 4 0 0 4 4 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|330508522|ref|YP_004384950.1| - 0.011 15.4 1.0 0.15 11.8 0.2 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding Oxidored_nitro PF00148.14 gi|330508522|ref|YP_004384950.1| - 0.013 14.1 0.0 0.032 12.8 0.0 1.5 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase 3HCDH_N PF02737.13 gi|330508522|ref|YP_004384950.1| - 0.019 14.6 1.9 0.71 9.4 0.2 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_7 PF12838.2 gi|330508522|ref|YP_004384950.1| - 0.023 15.0 0.6 0.023 15.0 0.4 2.5 2 1 0 2 2 1 0 4Fe-4S dicluster domain K_oxygenase PF13434.1 gi|330508522|ref|YP_004384950.1| - 0.033 13.0 0.0 0.53 9.1 0.0 2.4 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) OTCace PF00185.19 gi|330508522|ref|YP_004384950.1| - 0.056 13.3 0.0 0.095 12.5 0.0 1.4 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AdoHcyase_NAD PF00670.16 gi|330508522|ref|YP_004384950.1| - 0.064 13.0 2.1 0.7 9.7 0.0 2.7 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CPSase_L_chain PF00289.17 gi|330508522|ref|YP_004384950.1| - 0.075 13.1 0.1 2.3 8.3 0.0 2.4 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Fer4_18 PF13746.1 gi|330508522|ref|YP_004384950.1| - 0.087 13.2 0.2 0.087 13.2 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330508522|ref|YP_004384950.1| - 0.18 11.8 7.4 0.81 9.7 5.2 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Lycopene_cycl PF05834.7 gi|330508522|ref|YP_004384950.1| - 0.21 10.4 0.3 0.37 9.6 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_10 PF13460.1 gi|330508522|ref|YP_004384950.1| - 0.27 11.2 2.6 19 5.1 0.1 3.3 4 0 0 4 4 3 0 NADH(P)-binding Fer4_9 PF13187.1 gi|330508522|ref|YP_004384950.1| - 0.77 10.0 12.0 0.19 12.0 2.6 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain ThiF PF00899.16 gi|330508522|ref|YP_004384950.1| - 0.98 9.2 4.3 6.5 6.5 0.1 2.8 3 0 0 3 3 2 0 ThiF family DHODB_Fe-S_bind PF10418.4 gi|330508523|ref|YP_004384951.1| - 6.9e-12 44.6 3.1 1.8e-11 43.2 2.1 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|330508523|ref|YP_004384951.1| - 0.00062 19.8 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer2_3 PF13085.1 gi|330508523|ref|YP_004384951.1| - 0.14 11.9 0.3 0.26 11.1 0.2 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Form_Nir_trans PF01226.12 gi|330508524|ref|YP_004384952.1| - 1.2e-83 279.8 31.2 1.4e-83 279.6 21.6 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter MFS_1 PF07690.11 gi|330508525|ref|YP_004384953.1| - 9.3e-42 142.9 48.6 7.4e-29 100.5 14.7 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|330508525|ref|YP_004384953.1| - 1.8e-07 29.9 28.0 2.8e-05 22.7 1.2 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|330508525|ref|YP_004384953.1| - 6.2e-05 21.7 24.1 0.00023 19.8 16.2 2.6 1 1 0 1 1 1 1 Sugar (and other) transporter DUF1616 PF07760.6 gi|330508525|ref|YP_004384953.1| - 0.00028 20.1 0.5 0.00028 20.1 0.3 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1616) LacY_symp PF01306.14 gi|330508525|ref|YP_004384953.1| - 0.00063 18.4 2.5 0.00063 18.4 1.7 2.0 2 0 0 2 2 2 1 LacY proton/sugar symporter DUF2077 PF09850.4 gi|330508525|ref|YP_004384953.1| - 0.0034 16.8 0.1 0.008 15.6 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2077) HAD_2 PF13419.1 gi|330508526|ref|YP_004384954.1| - 7.8e-20 71.8 0.1 9.2e-20 71.5 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|330508526|ref|YP_004384954.1| - 4.3e-06 27.2 0.0 0.00011 22.7 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|330508526|ref|YP_004384954.1| - 0.0001 21.9 0.0 0.0021 17.7 0.0 2.1 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_like PF13242.1 gi|330508526|ref|YP_004384954.1| - 0.00019 21.0 0.0 0.00037 20.1 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Put_Phosphatase PF06888.7 gi|330508526|ref|YP_004384954.1| - 0.024 13.8 0.0 0.056 12.6 0.0 1.5 2 0 0 2 2 2 0 Putative Phosphatase Methyltrn_RNA_2 PF04013.7 gi|330508528|ref|YP_004384956.1| - 2.3e-61 206.8 0.0 2.6e-61 206.6 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Methyltrans_RNA PF04452.9 gi|330508528|ref|YP_004384956.1| - 0.072 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA methyltransferase TM2 PF05154.11 gi|330508529|ref|YP_004384957.1| - 4.5e-07 29.9 7.2 5.9e-07 29.5 5.0 1.2 1 0 0 1 1 1 1 TM2 domain ABC2_membrane PF01061.19 gi|330508529|ref|YP_004384957.1| - 0.0061 15.7 4.3 0.0073 15.4 2.9 1.0 1 0 0 1 1 1 1 ABC-2 type transporter Tic20 PF09685.5 gi|330508529|ref|YP_004384957.1| - 0.74 9.8 5.4 1 9.3 3.7 1.2 1 1 0 1 1 1 0 Tic20-like protein DUF1206 PF06724.6 gi|330508529|ref|YP_004384957.1| - 1.6 8.5 7.6 1.7 8.4 0.1 2.7 1 1 2 3 3 3 0 Domain of Unknown Function (DUF1206) THUMP PF02926.12 gi|330508530|ref|YP_004384958.1| - 9.5e-07 28.7 0.0 2.4e-06 27.4 0.0 1.8 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|330508530|ref|YP_004384958.1| - 0.096 12.7 5.6 25 5.0 0.1 3.8 3 1 1 4 4 4 0 DnaJ central domain Ribosomal_L21e PF01157.13 gi|330508531|ref|YP_004384959.1| - 8.8e-27 92.8 1.1 9.6e-27 92.6 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|330508532|ref|YP_004384960.1| - 8.1e-13 48.4 2.8 1e-12 48.1 1.9 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF1128 PF06569.6 gi|330508532|ref|YP_004384960.1| - 0.07 12.8 3.5 0.87 9.3 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1128) RNA_pol_Rpb1_6 PF04992.9 gi|330508532|ref|YP_004384960.1| - 0.076 12.7 0.3 0.099 12.3 0.2 1.3 1 1 0 1 1 1 0 RNA polymerase Rpb1, domain 6 UPF0154 PF03672.8 gi|330508532|ref|YP_004384960.1| - 0.1 12.2 0.0 0.52 9.9 0.0 2.0 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0154) HHH_3 PF12836.2 gi|330508532|ref|YP_004384960.1| - 0.11 12.4 0.0 0.3 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif FumaraseC_C PF10415.4 gi|330508532|ref|YP_004384960.1| - 6.9 6.8 6.8 27 4.9 0.1 3.2 3 1 0 3 3 3 0 Fumarase C C-terminus DUF655 PF04919.7 gi|330508533|ref|YP_004384961.1| - 9.3e-67 224.2 0.0 1.1e-66 224.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|330508533|ref|YP_004384961.1| - 2.5e-05 24.2 0.0 4.3e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|330508533|ref|YP_004384961.1| - 0.00027 20.8 0.0 0.00069 19.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif RrnaAD PF00398.15 gi|330508534|ref|YP_004384962.1| - 6.8e-55 185.9 0.0 7.7e-55 185.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|330508534|ref|YP_004384962.1| - 1.5e-07 31.4 0.0 2.7e-07 30.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330508534|ref|YP_004384962.1| - 0.00018 22.0 0.0 0.0003 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330508534|ref|YP_004384962.1| - 0.0024 17.2 0.0 0.0038 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|330508534|ref|YP_004384962.1| - 0.0025 18.2 0.0 0.005 17.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330508534|ref|YP_004384962.1| - 0.006 16.3 0.0 0.0084 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330508534|ref|YP_004384962.1| - 0.021 14.4 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Aldedh PF00171.17 gi|330508535|ref|YP_004384963.1| - 4.6e-167 556.0 0.1 5.5e-167 555.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|330508535|ref|YP_004384963.1| - 0.11 11.6 0.0 0.85 8.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) HTH_3 PF01381.17 gi|330508536|ref|YP_004384964.1| - 3.5e-07 29.9 0.0 5.1e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|330508536|ref|YP_004384964.1| - 2.1e-06 27.6 0.0 6.1e-06 26.2 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|330508536|ref|YP_004384964.1| - 5.5e-05 22.8 0.0 8.2e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|330508536|ref|YP_004384964.1| - 6.9e-05 22.3 0.0 0.00016 21.1 0.0 1.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|330508536|ref|YP_004384964.1| - 0.00019 20.7 0.0 0.00035 19.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_26 PF13443.1 gi|330508536|ref|YP_004384964.1| - 0.0012 19.0 0.7 0.0044 17.1 0.0 2.0 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|330508536|ref|YP_004384964.1| - 0.002 17.2 0.0 0.0036 16.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Fe_dep_repress PF01325.14 gi|330508536|ref|YP_004384964.1| - 0.007 16.2 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.7 gi|330508536|ref|YP_004384964.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain MarR_2 PF12802.2 gi|330508536|ref|YP_004384964.1| - 0.014 15.0 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 MarR family P22_Cro PF14549.1 gi|330508536|ref|YP_004384964.1| - 0.017 14.7 0.0 0.028 14.1 0.0 1.4 1 1 0 1 1 1 0 DNA-binding transcriptional regulator Cro RepB PF07506.6 gi|330508536|ref|YP_004384964.1| - 0.023 14.5 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_28 PF13518.1 gi|330508536|ref|YP_004384964.1| - 0.026 14.5 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|330508536|ref|YP_004384964.1| - 0.036 13.7 0.7 0.53 9.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|330508536|ref|YP_004384964.1| - 0.04 13.3 0.0 0.28 10.6 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 XisI PF08869.6 gi|330508536|ref|YP_004384964.1| - 0.1 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 XisI protein Trp_repressor PF01371.14 gi|330508536|ref|YP_004384964.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.5 2 0 0 2 2 1 0 Trp repressor protein NAD_synthase PF02540.12 gi|330508537|ref|YP_004384965.1| - 1.5e-08 33.8 0.0 8.6e-08 31.3 0.0 1.9 2 0 0 2 2 2 1 NAD synthase Asn_synthase PF00733.16 gi|330508537|ref|YP_004384965.1| - 3.4e-06 26.7 0.0 5.3e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|330508537|ref|YP_004384965.1| - 0.00025 20.5 0.0 0.00093 18.7 0.0 1.8 2 0 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.11 gi|330508537|ref|YP_004384965.1| - 0.0083 14.7 0.0 1.8 7.0 0.0 2.4 2 0 0 2 2 2 2 tRNA methyl transferase Aminotran_5 PF00266.14 gi|330508538|ref|YP_004384966.1| - 1.1e-115 386.3 0.0 8.5e-74 248.5 0.0 2.0 1 1 1 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|330508538|ref|YP_004384966.1| - 5.2e-08 32.3 0.0 7.4e-08 31.8 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|330508538|ref|YP_004384966.1| - 2.8e-05 23.4 0.0 3.7e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|330508538|ref|YP_004384966.1| - 0.0059 14.9 0.0 0.0083 14.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Telomere_Sde2 PF13019.1 gi|330508538|ref|YP_004384966.1| - 0.12 12.1 1.2 0.21 11.2 0.8 1.3 1 0 0 1 1 1 0 Telomere stability and silencing FdhD-NarQ PF02634.10 gi|330508539|ref|YP_004384967.1| - 5e-61 206.1 0.1 5.8e-61 205.9 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family ATP_bind_3 PF01171.15 gi|330508540|ref|YP_004384968.1| - 2.1e-15 56.6 0.0 5e-15 55.4 0.0 1.6 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|330508540|ref|YP_004384968.1| - 1.2e-07 30.6 0.1 1.6e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|330508540|ref|YP_004384968.1| - 0.00048 19.7 0.0 0.00073 19.1 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|330508540|ref|YP_004384968.1| - 0.0017 18.2 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|330508540|ref|YP_004384968.1| - 0.012 14.9 0.1 0.012 14.9 0.1 1.9 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|330508540|ref|YP_004384968.1| - 0.015 14.6 0.1 0.036 13.4 0.1 1.5 1 1 0 1 1 1 0 ATP-binding region DDE_Tnp_1 PF01609.16 gi|330508541|ref|YP_004384969.1| - 7.7e-11 41.9 1.1 2.8e-10 40.0 0.0 2.3 2 1 0 2 2 2 1 Transposase DDE domain DUF86 PF01934.12 gi|330508542|ref|YP_004384970.1| - 1.5e-26 92.3 0.1 1.8e-26 92.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Carbpep_Y_N PF05388.6 gi|330508542|ref|YP_004384970.1| - 0.082 13.0 0.1 0.46 10.6 0.0 2.0 2 0 0 2 2 2 0 Carboxypeptidase Y pro-peptide NTP_transf_2 PF01909.18 gi|330508543|ref|YP_004384971.1| - 2.4e-13 50.2 0.8 2.8e-13 50.0 0.6 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.4 gi|330508543|ref|YP_004384971.1| - 0.087 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG ELFV_dehydrog PF00208.16 gi|330508544|ref|YP_004384972.1| - 0.051 13.1 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UPF0150 PF03681.10 gi|330508545|ref|YP_004384973.1| - 1.2e-08 34.4 0.0 2.2e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) NadA PF02445.11 gi|330508546|ref|YP_004384974.1| - 1e-122 408.6 0.5 1.1e-122 408.4 0.3 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF1246 PF06849.7 gi|330508546|ref|YP_004384974.1| - 0.07 12.8 0.0 0.24 11.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1246) ThiS PF02597.15 gi|330508547|ref|YP_004384975.1| - 5.2e-11 42.8 0.0 5.8e-11 42.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family TfuA PF07812.7 gi|330508548|ref|YP_004384976.1| - 9.2e-43 144.5 0.0 1.4e-42 143.8 0.0 1.3 1 0 0 1 1 1 1 TfuA-like protein YcaO PF02624.11 gi|330508549|ref|YP_004384977.1| - 1.8e-93 313.6 1.5 4.6e-93 312.3 0.8 1.7 2 0 0 2 2 2 1 YcaO-like family 4HBT PF03061.17 gi|330508550|ref|YP_004384978.1| - 7.4e-14 51.6 0.1 9.5e-14 51.2 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|330508550|ref|YP_004384978.1| - 1.4e-11 44.4 0.0 1.9e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|330508550|ref|YP_004384978.1| - 6e-06 26.1 0.1 7.4e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.1 gi|330508550|ref|YP_004384978.1| - 0.0011 18.1 0.0 0.0012 18.0 0.0 1.1 1 0 0 1 1 1 1 Polyketide synthase dehydratase MaoC_dehydratas PF01575.14 gi|330508550|ref|YP_004384978.1| - 0.0029 16.9 0.0 0.0042 16.4 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain Aminotran_1_2 PF00155.16 gi|330508552|ref|YP_004384980.1| - 4.5e-65 219.9 0.0 5e-65 219.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|330508552|ref|YP_004384980.1| - 2e-12 46.8 0.1 3.1e-12 46.2 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|330508552|ref|YP_004384980.1| - 7.2e-10 38.4 0.0 1.6e-09 37.3 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|330508552|ref|YP_004384980.1| - 2.3e-08 33.1 0.0 3.5e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|330508552|ref|YP_004384980.1| - 8.6e-07 27.5 0.0 1.7e-06 26.6 0.0 1.4 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|330508552|ref|YP_004384980.1| - 0.0013 17.5 0.0 0.03 12.9 0.0 2.0 1 1 0 2 2 2 1 Allinase DUF374 PF04028.8 gi|330508552|ref|YP_004384980.1| - 0.036 13.3 0.0 0.097 11.9 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF374) NIR_SIR_ferr PF03460.12 gi|330508552|ref|YP_004384980.1| - 0.047 13.3 0.0 0.14 11.8 0.0 1.8 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain DUF3117 PF11314.3 gi|330508552|ref|YP_004384980.1| - 0.06 12.8 0.2 0.36 10.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3117) eIF-5a PF01287.15 gi|330508553|ref|YP_004384981.1| - 3e-12 46.3 0.3 5.6e-12 45.4 0.2 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|330508553|ref|YP_004384981.1| - 1.6e-05 24.7 0.0 2.9e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain Methyltransf_23 PF13489.1 gi|330508554|ref|YP_004384982.1| - 4.4e-14 52.4 0.0 6.6e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330508554|ref|YP_004384982.1| - 5.3e-14 52.4 0.0 8.6e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330508554|ref|YP_004384982.1| - 2.2e-10 40.3 0.0 3.2e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330508554|ref|YP_004384982.1| - 4.2e-09 36.7 0.0 7e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330508554|ref|YP_004384982.1| - 1.5e-08 35.2 0.0 2.7e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330508554|ref|YP_004384982.1| - 0.00014 22.1 0.0 0.00025 21.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330508554|ref|YP_004384982.1| - 0.029 13.7 0.0 0.044 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Metallophos_3 PF14582.1 gi|330508555|ref|YP_004384983.1| - 3.6e-16 59.1 0.0 1.6e-14 53.6 0.0 2.4 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.2 gi|330508555|ref|YP_004384983.1| - 9.2e-14 51.5 0.0 1.2e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|330508555|ref|YP_004384983.1| - 2.7e-13 49.7 0.3 1.3e-12 47.5 0.2 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Pik1 PF11522.3 gi|330508555|ref|YP_004384983.1| - 0.011 15.4 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 Yeast phosphatidylinositol-4-OH kinase Pik1 Fer4_5 PF12801.2 gi|330508557|ref|YP_004384985.1| - 3.9e-10 39.3 23.4 3.4e-08 33.1 4.2 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.22 gi|330508557|ref|YP_004384985.1| - 5.1e-10 38.5 19.8 2.1e-06 27.0 2.4 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330508557|ref|YP_004384985.1| - 6.6e-10 39.0 25.9 8.1e-08 32.4 9.7 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508557|ref|YP_004384985.1| - 1.2e-08 34.6 43.4 1.5e-06 27.9 10.9 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330508557|ref|YP_004384985.1| - 1.9e-08 34.5 13.5 0.00036 20.8 1.4 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330508557|ref|YP_004384985.1| - 2.2e-08 34.0 9.8 0.00068 19.6 1.9 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330508557|ref|YP_004384985.1| - 3e-08 33.1 19.9 9.6e-05 22.0 1.4 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330508557|ref|YP_004384985.1| - 1.6e-07 30.8 18.4 0.00025 20.7 1.2 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330508557|ref|YP_004384985.1| - 6.8e-07 29.0 12.8 0.0002 21.1 1.0 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330508557|ref|YP_004384985.1| - 1.6e-06 28.3 20.7 0.00049 20.4 1.6 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330508557|ref|YP_004384985.1| - 6.1e-06 26.8 12.5 0.0021 18.7 1.7 2.7 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|330508557|ref|YP_004384985.1| - 2.8e-05 24.1 15.2 0.001 19.2 2.6 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330508557|ref|YP_004384985.1| - 0.00015 22.0 16.0 0.038 14.3 1.2 2.8 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330508557|ref|YP_004384985.1| - 0.00094 19.5 5.3 0.00094 19.5 3.7 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330508557|ref|YP_004384985.1| - 0.05 13.9 17.6 0.079 13.3 1.3 2.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|330508557|ref|YP_004384985.1| - 0.17 12.4 13.5 0.91 10.1 1.3 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF202 PF02656.10 gi|330508557|ref|YP_004384985.1| - 6.5 7.0 9.6 0.76 10.0 3.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF772 PF05598.6 gi|330508558|ref|YP_004384986.1| - 4.3e-20 71.3 0.0 8.1e-20 70.5 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|330508558|ref|YP_004384986.1| - 2.7e-11 43.4 6.5 4.8e-10 39.3 4.5 2.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|330508558|ref|YP_004384986.1| - 1.5e-05 24.9 0.5 2.6e-05 24.2 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330508558|ref|YP_004384986.1| - 2.2e-05 24.1 0.2 6.3e-05 22.6 0.1 1.8 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_2 PF13586.1 gi|330508558|ref|YP_004384986.1| - 0.015 15.4 2.0 0.02 15.0 0.1 2.0 2 0 0 2 2 2 0 Transposase DDE domain Mad3_BUB1_I PF08311.7 gi|330508559|ref|YP_004384987.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 PqqD PF05402.7 gi|330508561|ref|YP_004384989.1| - 4.8e-08 32.8 0.0 8.2e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) B12-binding PF02310.14 gi|330508562|ref|YP_004384990.1| - 3.1e-21 75.4 0.1 6.6e-21 74.4 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.16 gi|330508562|ref|YP_004384990.1| - 5.2e-21 75.5 1.0 9.4e-21 74.6 0.4 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330508562|ref|YP_004384990.1| - 0.0011 19.1 0.4 0.0042 17.2 0.2 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330508562|ref|YP_004384990.1| - 0.063 13.2 0.8 0.26 11.3 0.2 2.4 2 1 1 3 3 3 0 4Fe-4S single cluster domain PemK PF02452.12 gi|330508563|ref|YP_004384991.1| - 2.5e-12 46.9 0.0 2.8e-12 46.8 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein Rotamase_3 PF13616.1 gi|330508564|ref|YP_004384992.1| - 0.11 12.7 0.4 0.22 11.8 0.3 1.5 1 0 0 1 1 1 0 PPIC-type PPIASE domain TPR_12 PF13424.1 gi|330508565|ref|YP_004384993.1| - 4.6e-40 135.4 16.7 1.9e-13 50.1 1.1 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330508565|ref|YP_004384993.1| - 9.8e-32 107.2 12.3 1.1e-05 24.7 0.1 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330508565|ref|YP_004384993.1| - 6.1e-31 105.8 23.9 4.3e-09 35.8 0.5 4.4 1 1 4 5 5 5 5 TPR repeat TPR_7 PF13176.1 gi|330508565|ref|YP_004384993.1| - 3.4e-27 92.0 9.7 7.9e-05 22.1 0.1 7.3 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330508565|ref|YP_004384993.1| - 1.4e-26 90.2 13.2 0.00045 19.9 0.1 7.1 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330508565|ref|YP_004384993.1| - 3.5e-26 90.3 10.5 0.00062 19.6 0.0 6.8 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330508565|ref|YP_004384993.1| - 2.3e-25 86.4 4.3 2.9e-05 23.5 0.0 7.0 6 0 0 6 6 6 5 Tetratricopeptide repeat NB-ARC PF00931.17 gi|330508565|ref|YP_004384993.1| - 2.3e-15 56.2 0.0 3.7e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain TPR_6 PF13174.1 gi|330508565|ref|YP_004384993.1| - 7.1e-12 44.9 5.1 6.5 7.4 0.1 8.3 7 1 0 7 7 7 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330508565|ref|YP_004384993.1| - 9.5e-12 44.4 19.0 0.27 11.9 0.0 8.9 10 0 0 10 10 7 3 Tetratricopeptide repeat SNAP PF14938.1 gi|330508565|ref|YP_004384993.1| - 1.2e-11 44.3 0.2 9.2e-06 24.9 0.2 2.3 2 0 0 2 2 2 2 Soluble NSF attachment protein, SNAP Apc3 PF12895.2 gi|330508565|ref|YP_004384993.1| - 7.4e-08 32.4 0.6 0.078 13.1 0.0 4.5 2 1 3 5 5 5 2 Anaphase-promoting complex, cyclosome, subunit 3 Rapsyn_N PF10579.4 gi|330508565|ref|YP_004384993.1| - 2.8e-07 30.2 0.5 0.23 11.2 0.0 4.1 1 1 3 4 4 4 2 Rapsyn N-terminal myristoylation and linker region DUF2753 PF10952.3 gi|330508565|ref|YP_004384993.1| - 2.6e-05 24.2 0.1 3 7.8 0.0 4.7 3 2 1 5 5 5 2 Protein of unknown function (DUF2753) DUF3856 PF12968.2 gi|330508565|ref|YP_004384993.1| - 2.9e-05 23.9 1.3 0.051 13.4 0.1 3.0 1 1 0 2 2 2 2 Domain of Unknown Function (DUF3856) AAA_16 PF13191.1 gi|330508565|ref|YP_004384993.1| - 8.7e-05 22.5 0.3 0.00041 20.3 0.0 2.4 2 1 0 2 2 1 1 AAA ATPase domain TPR_17 PF13431.1 gi|330508565|ref|YP_004384993.1| - 0.00019 21.3 2.8 7.1 7.0 0.0 5.6 5 0 0 5 5 5 0 Tetratricopeptide repeat DUF3366 PF11846.3 gi|330508565|ref|YP_004384993.1| - 0.00047 20.0 0.1 1.5 8.6 0.0 3.5 3 1 1 4 4 3 1 Domain of unknown function (DUF3366) Foie-gras_1 PF11817.3 gi|330508565|ref|YP_004384993.1| - 0.0011 18.4 0.1 7.5 5.9 0.0 3.3 3 0 0 3 3 3 0 Foie gras liver health family 1 TPR_19 PF14559.1 gi|330508565|ref|YP_004384993.1| - 0.0012 19.0 13.9 0.12 12.6 0.1 6.0 4 1 3 7 7 7 1 Tetratricopeptide repeat AAA_22 PF13401.1 gi|330508565|ref|YP_004384993.1| - 0.0024 17.9 0.0 0.0062 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|330508565|ref|YP_004384993.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase TPR_16 PF13432.1 gi|330508565|ref|YP_004384993.1| - 0.029 15.0 30.3 0.62 10.7 0.1 7.3 5 2 3 9 9 8 0 Tetratricopeptide repeat NACHT PF05729.7 gi|330508565|ref|YP_004384993.1| - 0.038 13.6 0.0 0.076 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DUF4167 PF13763.1 gi|330508565|ref|YP_004384993.1| - 0.11 12.5 0.3 0.37 10.8 0.1 2.0 2 0 0 2 2 1 0 Domain of unknown function (DUF4167) TPR_3 PF07720.7 gi|330508565|ref|YP_004384993.1| - 0.12 12.1 7.1 2.4 8.0 0.2 4.5 5 0 0 5 5 5 0 Tetratricopeptide repeat UPF0150 PF03681.10 gi|330508566|ref|YP_004384994.1| - 6.7e-18 64.0 0.4 7.8e-18 63.8 0.3 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|330508566|ref|YP_004384994.1| - 0.009 15.5 0.0 0.0099 15.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) Radical_SAM PF04055.16 gi|330508567|ref|YP_004384995.1| - 4.4e-16 59.5 0.0 1.5e-15 57.7 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|330508567|ref|YP_004384995.1| - 6.9e-06 26.3 0.1 6.9e-06 26.3 0.1 1.7 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|330508567|ref|YP_004384995.1| - 0.00028 20.9 0.0 0.00051 20.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330508567|ref|YP_004384995.1| - 0.00072 19.5 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain polyprenyl_synt PF00348.12 gi|330508568|ref|YP_004384996.1| - 4.6e-44 150.2 0.0 7.1e-44 149.6 0.0 1.3 1 1 0 1 1 1 1 Polyprenyl synthetase GCIP PF13324.1 gi|330508568|ref|YP_004384996.1| - 0.11 11.6 0.6 0.16 11.1 0.4 1.2 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting CoA_binding_2 PF13380.1 gi|330508570|ref|YP_004384998.1| - 1.5e-32 112.2 0.0 1.7e-32 112.0 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|330508570|ref|YP_004384998.1| - 2.6e-06 27.8 0.0 3.5e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain DUF4277 PF14104.1 gi|330508571|ref|YP_004384999.1| - 1.2e-40 138.2 0.0 2.9e-40 137.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|330508571|ref|YP_004384999.1| - 2.1e-08 33.9 0.1 2.2e-07 30.6 0.1 2.1 1 1 0 1 1 1 1 Transposase DDE domain AT_hook PF02178.14 gi|330508571|ref|YP_004384999.1| - 0.029 14.0 0.3 0.072 12.7 0.2 1.7 1 0 0 1 1 1 0 AT hook motif UPF0150 PF03681.10 gi|330508573|ref|YP_004385001.1| - 1.7e-13 49.9 0.1 2.7e-13 49.3 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) HTH_Tnp_1 PF01527.15 gi|330508574|ref|YP_004385002.1| - 4.1e-11 42.6 0.1 6.4e-11 42.0 0.0 1.5 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|330508574|ref|YP_004385002.1| - 0.00067 19.2 0.0 0.0014 18.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330508574|ref|YP_004385002.1| - 0.0022 17.9 0.0 0.0044 16.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|330508574|ref|YP_004385002.1| - 0.0071 16.4 0.1 0.0091 16.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|330508574|ref|YP_004385002.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain GnsAB PF08178.6 gi|330508574|ref|YP_004385002.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 GnsA/GnsB family rve PF00665.21 gi|330508575|ref|YP_004385003.1| - 1.4e-23 83.2 0.0 2.2e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330508575|ref|YP_004385003.1| - 1.6e-18 65.9 0.2 3.6e-18 64.8 0.2 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.1 gi|330508575|ref|YP_004385003.1| - 4.1e-17 61.9 0.3 1.5e-16 60.1 0.1 1.9 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.1 gi|330508575|ref|YP_004385003.1| - 3.9e-09 36.4 2.3 6.8e-09 35.6 1.1 1.8 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.1 gi|330508575|ref|YP_004385003.1| - 1.3e-06 28.4 0.4 2.1e-06 27.7 0.3 1.3 1 0 0 1 1 1 1 DDE domain HTH_Tnp_Tc3_2 PF01498.13 gi|330508575|ref|YP_004385003.1| - 0.14 12.2 0.4 0.44 10.6 0.0 1.9 2 0 0 2 2 2 0 Transposase UPF0104 PF03706.8 gi|330508576|ref|YP_004385004.1| - 2.3e-37 128.8 34.2 2.8e-37 128.5 23.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) TMEMspv1-c74-12 PF11044.3 gi|330508576|ref|YP_004385004.1| - 0.24 10.9 0.1 0.24 10.9 0.1 2.5 3 0 0 3 3 3 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein NAD_binding_8 PF13450.1 gi|330508577|ref|YP_004385005.1| - 1.1e-17 63.7 0.0 2.1e-17 62.8 0.0 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|330508577|ref|YP_004385005.1| - 1e-08 34.4 0.4 1.3e-07 30.7 0.3 2.0 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|330508577|ref|YP_004385005.1| - 3.2e-07 29.5 0.0 2.3e-06 26.7 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|330508577|ref|YP_004385005.1| - 4e-07 29.4 0.0 5.8e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase HI0933_like PF03486.9 gi|330508577|ref|YP_004385005.1| - 8.4e-07 27.7 0.0 1.3e-05 23.9 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein GDI PF00996.13 gi|330508577|ref|YP_004385005.1| - 9.7e-06 24.1 0.0 1.3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 GDP dissociation inhibitor FAD_oxidored PF12831.2 gi|330508577|ref|YP_004385005.1| - 1.1e-05 24.6 0.0 1.9e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|330508577|ref|YP_004385005.1| - 0.00014 21.0 0.2 0.00027 20.1 0.2 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|330508577|ref|YP_004385005.1| - 0.017 15.5 1.4 0.11 12.9 0.2 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|330508577|ref|YP_004385005.1| - 0.018 14.1 0.2 0.025 13.6 0.1 1.1 1 0 0 1 1 1 0 FAD binding domain FMO-like PF00743.14 gi|330508577|ref|YP_004385005.1| - 0.018 13.2 0.1 0.028 12.6 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like GIDA PF01134.17 gi|330508577|ref|YP_004385005.1| - 0.021 13.6 0.0 0.032 13.1 0.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|330508577|ref|YP_004385005.1| - 0.063 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|330508577|ref|YP_004385005.1| - 0.086 11.7 0.2 0.14 11.0 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|330508577|ref|YP_004385005.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|330508577|ref|YP_004385005.1| - 0.13 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glycos_transf_2 PF00535.21 gi|330508578|ref|YP_004385006.1| - 5.3e-29 101.0 0.1 8.9e-29 100.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330508578|ref|YP_004385006.1| - 5.8e-17 62.2 0.0 1.1e-16 61.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|330508578|ref|YP_004385006.1| - 2.8e-09 36.4 0.1 2.4e-08 33.3 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|330508578|ref|YP_004385006.1| - 5.1e-08 32.4 0.0 9.8e-08 31.4 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|330508578|ref|YP_004385006.1| - 1.6e-07 31.2 0.0 2.6e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|330508578|ref|YP_004385006.1| - 6.3e-06 25.5 0.1 0.0026 17.0 0.0 3.0 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.1 gi|330508578|ref|YP_004385006.1| - 0.018 15.3 0.0 0.037 14.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Radical_SAM PF04055.16 gi|330508579|ref|YP_004385007.1| - 1.2e-14 54.7 0.0 2.2e-12 47.4 0.0 2.5 2 0 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|330508579|ref|YP_004385007.1| - 1.3e-07 31.6 0.9 2e-06 27.8 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330508579|ref|YP_004385007.1| - 1.5e-06 28.3 0.9 2e-05 24.7 0.0 2.3 1 1 1 2 2 2 1 4Fe-4S single cluster domain Glycos_transf_1 PF00534.15 gi|330508580|ref|YP_004385008.1| - 9.7e-31 106.4 0.0 2.7e-30 105.0 0.0 1.7 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|330508580|ref|YP_004385008.1| - 2.4e-18 66.8 0.0 4.4e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|330508580|ref|YP_004385008.1| - 1.3e-13 51.0 0.1 3.5e-13 49.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|330508580|ref|YP_004385008.1| - 4e-13 49.4 0.1 3.7e-10 39.7 0.0 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|330508580|ref|YP_004385008.1| - 1.1e-12 48.3 0.0 2e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|330508580|ref|YP_004385008.1| - 1.8e-08 34.3 0.1 3.2e-08 33.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|330508580|ref|YP_004385008.1| - 3.6e-06 27.1 0.0 6.4e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 MarR_2 PF12802.2 gi|330508581|ref|YP_004385009.1| - 1.5e-06 27.7 0.0 2.5e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|330508581|ref|YP_004385009.1| - 6.4e-05 22.5 0.0 0.00016 21.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|330508581|ref|YP_004385009.1| - 9.9e-05 21.8 0.0 0.00018 21.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|330508581|ref|YP_004385009.1| - 0.00057 19.7 0.0 0.0013 18.6 0.0 1.6 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein TrmB PF01978.14 gi|330508581|ref|YP_004385009.1| - 0.0014 18.2 0.0 0.0024 17.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|330508581|ref|YP_004385009.1| - 0.0017 18.1 0.0 0.0032 17.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|330508581|ref|YP_004385009.1| - 0.0059 15.9 0.1 0.018 14.4 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|330508581|ref|YP_004385009.1| - 0.0063 16.1 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|330508581|ref|YP_004385009.1| - 0.0064 16.0 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|330508581|ref|YP_004385009.1| - 0.021 14.8 0.0 0.03 14.4 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_27 PF13463.1 gi|330508581|ref|YP_004385009.1| - 0.027 14.7 0.0 0.05 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|330508581|ref|YP_004385009.1| - 0.043 13.9 0.1 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|330508581|ref|YP_004385009.1| - 0.044 13.6 0.1 0.61 9.9 0.0 2.1 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Rrf2 PF02082.15 gi|330508581|ref|YP_004385009.1| - 0.081 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|330508581|ref|YP_004385009.1| - 0.082 12.5 0.0 0.24 11.0 0.0 1.8 1 0 0 1 1 1 0 HTH domain RDD PF06271.7 gi|330508582|ref|YP_004385010.1| - 1.9e-16 60.2 6.0 2.2e-16 59.9 4.2 1.1 1 0 0 1 1 1 1 RDD family DUF3262 PF11660.3 gi|330508582|ref|YP_004385010.1| - 0.17 11.9 0.3 0.17 11.9 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) NPCBM_assoc PF10633.4 gi|330508583|ref|YP_004385011.1| - 3.1e-07 30.3 0.0 0.088 12.8 0.0 3.7 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DNA_pol_B_3 PF08408.5 gi|330508583|ref|YP_004385011.1| - 0.013 15.3 0.1 0.27 11.0 0.1 2.3 2 0 0 2 2 2 0 DNA polymerase family B viral insert MMPL PF03176.10 gi|330508584|ref|YP_004385012.1| - 1.1e-48 165.6 19.7 6e-25 87.6 6.0 2.3 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|330508584|ref|YP_004385012.1| - 1.5e-10 40.7 10.4 1.4e-06 27.8 0.3 3.1 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|330508584|ref|YP_004385012.1| - 7.8e-09 34.9 6.5 7.8e-09 34.9 4.5 2.6 2 0 0 2 2 2 1 Protein export membrane protein ACR_tran PF00873.14 gi|330508584|ref|YP_004385012.1| - 5.6e-08 30.7 23.2 2.2e-06 25.4 2.9 2.3 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family HTH_DeoR PF08220.7 gi|330508585|ref|YP_004385013.1| - 9e-06 25.1 0.1 2.7e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_24 PF13412.1 gi|330508585|ref|YP_004385013.1| - 0.00016 20.9 0.1 0.00057 19.2 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|330508585|ref|YP_004385013.1| - 0.00019 20.9 0.2 0.00059 19.4 0.0 1.9 3 0 0 3 3 3 1 HTH domain HTH_IclR PF09339.5 gi|330508585|ref|YP_004385013.1| - 0.0015 18.0 0.3 0.0046 16.5 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Mga PF08280.6 gi|330508585|ref|YP_004385013.1| - 0.0016 18.1 0.1 0.0042 16.8 0.1 1.7 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_36 PF13730.1 gi|330508585|ref|YP_004385013.1| - 0.0032 17.5 0.0 0.0092 16.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|330508585|ref|YP_004385013.1| - 0.0053 16.4 0.0 0.013 15.1 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.6 gi|330508585|ref|YP_004385013.1| - 0.0088 15.9 0.4 0.023 14.6 0.0 1.9 2 1 0 2 2 2 1 Sulfolobus plasmid regulatory protein DUF4423 PF14394.1 gi|330508585|ref|YP_004385013.1| - 0.0099 15.4 0.3 0.24 10.9 0.0 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) Med11 PF10280.4 gi|330508585|ref|YP_004385013.1| - 0.021 14.8 0.3 0.043 13.8 0.2 1.5 1 0 0 1 1 1 0 Mediator complex protein HTH_5 PF01022.15 gi|330508585|ref|YP_004385013.1| - 0.039 13.6 0.0 0.11 12.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|330508585|ref|YP_004385013.1| - 0.06 13.5 0.1 0.95 9.6 0.0 2.6 1 1 2 3 3 3 0 Winged helix-turn helix SLX9 PF15341.1 gi|330508585|ref|YP_004385013.1| - 0.061 13.7 0.8 0.091 13.2 0.6 1.3 1 0 0 1 1 1 0 Ribosome biogenesis protein SLX9 MarR_2 PF12802.2 gi|330508585|ref|YP_004385013.1| - 0.067 12.8 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 MarR family GntR PF00392.16 gi|330508585|ref|YP_004385013.1| - 0.074 12.5 0.0 0.21 11.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TPP_enzyme_N PF02776.13 gi|330508586|ref|YP_004385014.1| - 3.9e-09 36.2 0.0 5e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|330508587|ref|YP_004385015.1| - 8.1e-20 70.9 0.1 1.6e-19 70.0 0.1 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DUF1470 PF07336.6 gi|330508587|ref|YP_004385015.1| - 0.054 13.8 0.0 0.092 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1470) DUF39 PF01837.11 gi|330508588|ref|YP_004385016.1| - 1.5e-110 369.0 0.0 1.7e-110 368.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_7 PF12838.2 gi|330508588|ref|YP_004385016.1| - 1.8e-08 34.6 10.1 1.1e-07 32.1 7.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330508588|ref|YP_004385016.1| - 7.4e-08 31.8 10.2 0.00084 19.1 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330508588|ref|YP_004385016.1| - 1.5e-07 30.9 10.1 0.0002 21.1 1.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|330508588|ref|YP_004385016.1| - 6.4e-07 28.7 11.1 1.8e-05 24.1 0.7 3.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330508588|ref|YP_004385016.1| - 2.5e-06 27.6 9.5 5.1e-06 26.6 6.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508588|ref|YP_004385016.1| - 9.1e-06 25.3 19.3 2.2e-05 24.1 7.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330508588|ref|YP_004385016.1| - 0.00037 20.3 8.7 0.00071 19.3 6.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330508588|ref|YP_004385016.1| - 0.0032 17.4 10.3 0.01 15.8 7.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330508588|ref|YP_004385016.1| - 0.0039 17.4 9.9 3.1 8.2 8.5 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|330508588|ref|YP_004385016.1| - 0.0057 16.5 3.0 0.011 15.5 2.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330508588|ref|YP_004385016.1| - 0.0078 16.4 16.6 0.12 12.7 3.3 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330508588|ref|YP_004385016.1| - 0.011 16.4 8.9 0.78 10.5 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|330508588|ref|YP_004385016.1| - 0.6 10.7 14.3 0.079 13.5 3.6 3.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330508588|ref|YP_004385016.1| - 7.7 7.1 11.3 16 6.1 1.7 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain NMT1_2 PF13379.1 gi|330508589|ref|YP_004385017.1| - 4e-42 144.3 0.1 5.1e-42 143.9 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|330508589|ref|YP_004385017.1| - 1.3e-18 67.4 0.0 1.7e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|330508589|ref|YP_004385017.1| - 0.0056 16.0 0.0 0.0079 15.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|330508589|ref|YP_004385017.1| - 0.037 13.2 0.0 0.07 12.3 0.0 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 BPD_transp_1 PF00528.17 gi|330508590|ref|YP_004385018.1| - 2.3e-22 79.4 11.1 2.3e-22 79.4 7.7 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component AdoMet_Synthase PF01941.14 gi|330508591|ref|YP_004385019.1| - 3.6e-177 588.7 1.5 4.2e-177 588.5 1.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Acetyltransf_4 PF13420.1 gi|330508591|ref|YP_004385019.1| - 0.014 15.3 0.2 3.4 7.5 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain ParA PF10609.4 gi|330508592|ref|YP_004385020.1| - 2.1e-34 117.2 0.7 4e-34 116.3 0.2 1.6 2 0 0 2 2 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|330508592|ref|YP_004385020.1| - 2.9e-22 79.0 0.0 4.1e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|330508592|ref|YP_004385020.1| - 3e-09 36.3 0.0 4.8e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|330508592|ref|YP_004385020.1| - 1.4e-07 31.5 0.0 1.8e-06 27.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|330508592|ref|YP_004385020.1| - 1e-05 24.7 2.4 0.00064 18.8 0.1 2.9 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|330508592|ref|YP_004385020.1| - 0.00039 20.0 0.5 0.0075 15.8 0.3 2.2 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|330508592|ref|YP_004385020.1| - 0.0026 16.9 0.1 0.023 13.8 0.1 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.15 gi|330508592|ref|YP_004385020.1| - 0.0072 16.0 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_17 PF13207.1 gi|330508592|ref|YP_004385020.1| - 0.018 15.8 0.1 0.032 15.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain VirC1 PF07015.6 gi|330508592|ref|YP_004385020.1| - 0.041 12.9 0.0 0.074 12.1 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein MobB PF03205.9 gi|330508592|ref|YP_004385020.1| - 0.049 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|330508592|ref|YP_004385020.1| - 0.074 11.8 0.2 0.12 11.1 0.1 1.3 1 0 0 1 1 1 0 ArgK protein AAA_18 PF13238.1 gi|330508592|ref|YP_004385020.1| - 0.096 12.9 0.1 0.2 11.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|330508592|ref|YP_004385020.1| - 0.11 11.8 0.3 0.18 11.1 0.2 1.5 1 1 0 1 1 1 0 AAA domain Radical_SAM PF04055.16 gi|330508593|ref|YP_004385021.1| - 3.5e-13 50.0 0.0 5.7e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|330508593|ref|YP_004385021.1| - 8.2e-06 25.8 0.0 0.00019 21.4 0.0 2.5 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330508593|ref|YP_004385021.1| - 0.0022 18.0 0.0 0.0074 16.4 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain MarR_2 PF12802.2 gi|330508593|ref|YP_004385021.1| - 0.0051 16.4 0.0 0.062 12.9 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|330508593|ref|YP_004385021.1| - 0.0094 15.6 0.2 0.019 14.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|330508593|ref|YP_004385021.1| - 0.019 14.7 0.1 0.053 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|330508593|ref|YP_004385021.1| - 0.035 13.6 0.0 0.19 11.3 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|330508593|ref|YP_004385021.1| - 0.061 13.6 0.0 0.37 11.1 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HEAT_2 PF13646.1 gi|330508594|ref|YP_004385022.1| - 1.8e-81 268.4 42.2 1.3e-18 66.9 0.1 4.6 1 1 6 7 7 7 7 HEAT repeats HEAT_PBS PF03130.11 gi|330508594|ref|YP_004385022.1| - 3.3e-35 116.9 32.2 4.3e-07 29.7 0.1 9.6 9 1 0 9 9 9 7 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|330508594|ref|YP_004385022.1| - 7.3e-31 103.4 3.0 0.009 16.0 0.0 8.6 9 0 0 9 9 9 8 HEAT repeat HEAT_EZ PF13513.1 gi|330508594|ref|YP_004385022.1| - 4.7e-20 71.4 21.5 1.8e-05 25.0 0.0 8.3 3 3 6 9 9 9 8 HEAT-like repeat Arm PF00514.18 gi|330508594|ref|YP_004385022.1| - 1.2e-11 43.9 1.4 1.5 8.7 0.0 7.4 6 2 2 8 8 8 4 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|330508594|ref|YP_004385022.1| - 3.5e-06 25.6 0.0 0.2 9.9 0.0 4.1 1 1 2 3 3 3 2 Adaptin N terminal region DUF615 PF04751.9 gi|330508594|ref|YP_004385022.1| - 0.0053 16.4 0.3 0.042 13.4 0.1 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF615) Vac14_Fab1_bd PF12755.2 gi|330508594|ref|YP_004385022.1| - 0.024 15.0 0.0 13 6.2 0.0 4.2 2 2 4 6 6 6 0 Vacuolar 14 Fab1-binding region TetR_C_6 PF13977.1 gi|330508594|ref|YP_004385022.1| - 0.087 12.8 7.2 0.96 9.4 0.3 3.2 2 1 1 3 3 3 0 Bacterial transcriptional repressor DNA_alkylation PF08713.6 gi|330508594|ref|YP_004385022.1| - 2 7.8 6.7 7 6.0 0.1 3.3 2 1 0 3 3 3 0 DNA alkylation repair enzyme CxxCxxCC PF03692.10 gi|330508595|ref|YP_004385023.1| - 1.1e-13 51.4 0.3 1.9e-13 50.6 0.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain YycC PF14174.1 gi|330508595|ref|YP_004385023.1| - 0.044 13.4 0.1 0.16 11.6 0.0 1.9 2 0 0 2 2 2 0 YycC-like protein MMR_HSR1 PF01926.18 gi|330508596|ref|YP_004385024.1| - 1.7e-14 53.7 0.0 2.1e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|330508596|ref|YP_004385024.1| - 1.1e-10 41.0 0.0 9.6e-10 37.9 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|330508596|ref|YP_004385024.1| - 9.2e-05 21.9 0.0 0.017 14.5 0.0 2.4 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Ras PF00071.17 gi|330508596|ref|YP_004385024.1| - 0.00064 19.1 0.0 0.0016 17.8 0.0 1.6 1 1 0 1 1 1 1 Ras family Miro PF08477.8 gi|330508596|ref|YP_004385024.1| - 0.0076 16.7 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 Miro-like protein PP-binding PF00550.20 gi|330508596|ref|YP_004385024.1| - 0.008 16.4 0.1 0.015 15.5 0.1 1.4 1 0 0 1 1 1 1 Phosphopantetheine attachment site Dynamin_N PF00350.18 gi|330508596|ref|YP_004385024.1| - 0.0085 15.9 0.1 1.3 8.8 0.0 2.1 1 1 1 2 2 2 2 Dynamin family DUF258 PF03193.11 gi|330508596|ref|YP_004385024.1| - 0.027 13.6 0.0 0.046 12.9 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF258 PduV-EutP PF10662.4 gi|330508596|ref|YP_004385024.1| - 0.049 13.1 0.0 0.08 12.4 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.1 gi|330508596|ref|YP_004385024.1| - 0.066 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MS_channel PF00924.13 gi|330508597|ref|YP_004385025.1| - 4.1e-38 130.7 0.2 4.1e-38 130.7 0.1 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel Sm_multidrug_ex PF06695.6 gi|330508597|ref|YP_004385025.1| - 0.084 13.0 2.9 0.18 11.9 2.0 1.6 1 0 0 1 1 1 0 Putative small multi-drug export protein TRP PF06011.7 gi|330508597|ref|YP_004385025.1| - 0.35 9.4 4.4 0.58 8.6 3.1 1.3 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel CorA PF01544.13 gi|330508598|ref|YP_004385026.1| - 4.5e-81 272.0 2.4 5.9e-81 271.6 1.7 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein ACR_tran PF00873.14 gi|330508598|ref|YP_004385026.1| - 0.0063 13.9 0.1 0.0081 13.6 0.1 1.1 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family T2SF PF00482.18 gi|330508598|ref|YP_004385026.1| - 0.027 14.3 0.1 0.027 14.3 0.1 2.5 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F CopD PF05425.8 gi|330508598|ref|YP_004385026.1| - 0.13 12.4 0.7 0.2 11.8 0.5 1.3 1 0 0 1 1 1 0 Copper resistance protein D Nramp PF01566.13 gi|330508599|ref|YP_004385027.1| - 8.6e-93 310.9 24.0 8.6e-93 310.9 16.6 1.4 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein MgtE_N PF03448.12 gi|330508600|ref|YP_004385028.1| - 2.9e-28 98.1 10.8 4.4e-28 97.6 6.2 2.0 2 0 0 2 2 2 1 MgtE intracellular N domain CBS PF00571.23 gi|330508600|ref|YP_004385028.1| - 3e-22 78.1 1.3 3.3e-10 39.5 0.1 3.9 4 0 0 4 4 4 2 CBS domain FliG_M PF14841.1 gi|330508600|ref|YP_004385028.1| - 3e-05 23.9 1.4 0.017 15.1 0.1 3.4 2 1 1 3 3 3 2 FliG middle domain PRC PF05239.11 gi|330508600|ref|YP_004385028.1| - 0.00028 20.6 3.6 0.01 15.6 0.0 3.7 4 0 0 4 4 4 1 PRC-barrel domain PYRIN PF02758.11 gi|330508600|ref|YP_004385028.1| - 0.0044 16.6 1.0 4.2 7.1 0.1 2.8 2 1 1 3 3 3 2 PAAD/DAPIN/Pyrin domain FliG_N PF14842.1 gi|330508600|ref|YP_004385028.1| - 0.059 13.4 5.7 2.2 8.4 0.2 3.1 2 1 1 3 3 3 0 FliG N-terminal domain AsnC_trans_reg PF01037.16 gi|330508601|ref|YP_004385029.1| - 4.3e-16 58.3 0.2 1.3e-15 56.8 0.1 1.8 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|330508601|ref|YP_004385029.1| - 2.8e-12 45.8 0.3 4.5e-12 45.1 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|330508601|ref|YP_004385029.1| - 2.1e-11 43.1 1.6 3.7e-11 42.3 1.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|330508601|ref|YP_004385029.1| - 6.8e-07 28.8 0.1 1e-06 28.2 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|330508601|ref|YP_004385029.1| - 0.00014 21.6 0.0 0.00023 20.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|330508601|ref|YP_004385029.1| - 0.00029 20.4 0.0 0.0005 19.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|330508601|ref|YP_004385029.1| - 0.0007 19.2 0.2 0.0012 18.4 0.1 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|330508601|ref|YP_004385029.1| - 0.00083 18.7 0.1 0.0019 17.6 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|330508601|ref|YP_004385029.1| - 0.00098 18.7 0.1 0.0018 17.8 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|330508601|ref|YP_004385029.1| - 0.001 18.6 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.12 gi|330508601|ref|YP_004385029.1| - 0.0024 17.4 0.0 0.005 16.4 0.0 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Fe_dep_repress PF01325.14 gi|330508601|ref|YP_004385029.1| - 0.004 17.0 0.0 0.0075 16.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|330508601|ref|YP_004385029.1| - 0.0051 17.1 0.0 0.0095 16.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sulfolobus_pRN PF05584.6 gi|330508601|ref|YP_004385029.1| - 0.015 15.2 0.1 0.03 14.2 0.1 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HemN_C PF06969.11 gi|330508601|ref|YP_004385029.1| - 0.023 14.7 0.1 0.048 13.7 0.1 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_10 PF04967.7 gi|330508601|ref|YP_004385029.1| - 0.037 13.6 0.0 0.072 12.6 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_5 PF01022.15 gi|330508601|ref|YP_004385029.1| - 0.038 13.6 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|330508601|ref|YP_004385029.1| - 0.043 13.3 0.4 0.081 12.4 0.3 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|330508601|ref|YP_004385029.1| - 0.049 13.2 0.1 0.088 12.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_23 PF13384.1 gi|330508601|ref|YP_004385029.1| - 0.055 13.1 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|330508601|ref|YP_004385029.1| - 0.11 12.1 0.1 0.37 10.3 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain FeoC PF09012.5 gi|330508601|ref|YP_004385029.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Tnp_Tc3_2 PF01498.13 gi|330508601|ref|YP_004385029.1| - 0.15 12.0 0.2 0.25 11.4 0.2 1.3 1 0 0 1 1 1 0 Transposase Herpes_TK_C PF08465.5 gi|330508602|ref|YP_004385030.1| - 0.034 13.6 0.1 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 Thymidine kinase from Herpesvirus C-terminal AhpC-TSA PF00578.16 gi|330508603|ref|YP_004385031.1| - 1.4e-40 137.8 0.0 1.7e-40 137.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|330508603|ref|YP_004385031.1| - 1.3e-18 66.9 0.0 1.5e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|330508603|ref|YP_004385031.1| - 2.9e-06 27.1 0.0 0.00017 21.4 0.0 2.1 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF4352 PF11611.3 gi|330508604|ref|YP_004385032.1| - 0.001 19.1 0.0 0.37 10.9 0.0 2.9 2 1 0 2 2 2 2 Domain of unknown function (DUF4352) tRNA-synt_1g PF09334.6 gi|330508605|ref|YP_004385033.1| - 5.2e-141 469.8 0.0 6.7e-141 469.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|330508605|ref|YP_004385033.1| - 1.1e-25 89.2 1.1 2.3e-25 88.2 0.4 1.8 2 0 0 2 2 2 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|330508605|ref|YP_004385033.1| - 3.2e-19 68.3 0.3 1.5e-07 29.8 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|330508605|ref|YP_004385033.1| - 1.9e-14 53.7 0.0 4.1e-14 52.5 0.0 1.6 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|330508605|ref|YP_004385033.1| - 4.3e-13 49.0 0.0 4.4e-07 29.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|330508605|ref|YP_004385033.1| - 0.00029 19.6 0.0 0.62 8.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|330508605|ref|YP_004385033.1| - 0.031 13.1 0.1 7.5 5.2 0.0 3.1 2 1 1 3 3 3 0 tRNA synthetases class I (R) DZR PF12773.2 gi|330508605|ref|YP_004385033.1| - 0.23 11.3 8.2 0.84 9.5 5.7 2.0 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|330508605|ref|YP_004385033.1| - 1.2 8.7 12.9 0.29 10.6 3.4 2.6 2 0 0 2 2 2 0 zinc-ribbon domain ABC_tran PF00005.22 gi|330508606|ref|YP_004385034.1| - 3.1e-51 173.2 0.0 4e-26 91.9 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|330508606|ref|YP_004385034.1| - 3.2e-13 50.2 2.3 0.0053 16.7 0.1 4.2 3 1 0 3 3 3 3 AAA domain AAA_15 PF13175.1 gi|330508606|ref|YP_004385034.1| - 5.3e-10 38.9 0.1 0.45 9.4 0.0 4.1 4 0 0 4 4 4 4 AAA ATPase domain DUF258 PF03193.11 gi|330508606|ref|YP_004385034.1| - 6.7e-09 35.1 0.1 0.0027 16.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|330508606|ref|YP_004385034.1| - 5.6e-08 33.0 2.1 0.024 14.7 0.0 4.3 3 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|330508606|ref|YP_004385034.1| - 5.1e-07 29.1 0.7 0.0056 16.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|330508606|ref|YP_004385034.1| - 9.4e-06 25.2 0.0 0.13 11.6 0.0 3.6 4 0 0 4 4 4 2 AAA-like domain AAA_25 PF13481.1 gi|330508606|ref|YP_004385034.1| - 1.6e-05 24.3 0.0 3.1 7.1 0.0 4.3 4 0 0 4 4 4 1 AAA domain AAA_17 PF13207.1 gi|330508606|ref|YP_004385034.1| - 4.5e-05 24.2 0.0 0.089 13.6 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|330508606|ref|YP_004385034.1| - 5.7e-05 23.1 0.0 0.39 10.6 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|330508606|ref|YP_004385034.1| - 0.00023 21.5 3.7 0.066 13.5 0.6 2.4 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330508606|ref|YP_004385034.1| - 0.00045 19.5 5.0 0.03 13.5 0.0 3.6 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|330508606|ref|YP_004385034.1| - 0.0014 18.5 4.7 0.057 13.3 0.1 4.3 4 2 0 4 4 2 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|330508606|ref|YP_004385034.1| - 0.0025 17.7 0.0 1.7 8.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|330508606|ref|YP_004385034.1| - 0.0048 16.3 0.1 3.6 6.9 0.0 2.9 3 0 0 3 3 3 1 IstB-like ATP binding protein Miro PF08477.8 gi|330508606|ref|YP_004385034.1| - 0.0056 17.1 0.1 6.3 7.3 0.0 3.1 3 0 0 3 3 3 0 Miro-like protein PduV-EutP PF10662.4 gi|330508606|ref|YP_004385034.1| - 0.0057 16.1 0.1 0.95 8.9 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.1 gi|330508606|ref|YP_004385034.1| - 0.0066 16.7 2.1 0.8 10.0 0.0 3.3 3 1 0 3 3 3 1 AAA domain AAA_30 PF13604.1 gi|330508606|ref|YP_004385034.1| - 0.016 14.8 1.1 1.1 8.7 0.1 3.0 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|330508606|ref|YP_004385034.1| - 0.017 14.8 3.3 1.3 8.7 0.2 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF4358 PF14270.1 gi|330508606|ref|YP_004385034.1| - 0.025 14.4 0.0 3.1 7.7 0.2 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4358) RNA_helicase PF00910.17 gi|330508606|ref|YP_004385034.1| - 0.031 14.4 0.0 5.5 7.2 0.0 2.5 2 0 0 2 2 2 0 RNA helicase Rad17 PF03215.10 gi|330508606|ref|YP_004385034.1| - 0.043 12.5 0.0 0.27 9.8 0.0 2.2 3 0 0 3 3 3 0 Rad17 cell cycle checkpoint protein NB-ARC PF00931.17 gi|330508606|ref|YP_004385034.1| - 0.066 12.0 0.2 1.6 7.4 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain UPF0079 PF02367.12 gi|330508606|ref|YP_004385034.1| - 0.13 11.9 0.6 11 5.7 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 DUF927 PF06048.6 gi|330508606|ref|YP_004385034.1| - 0.13 11.4 0.8 7 5.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF927) ABC_ATPase PF09818.4 gi|330508606|ref|YP_004385034.1| - 0.16 10.4 2.9 23 3.4 0.1 4.0 4 1 0 4 4 4 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.18 gi|330508606|ref|YP_004385034.1| - 0.2 11.6 2.4 1.7 8.6 0.3 3.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|330508606|ref|YP_004385034.1| - 0.5 10.0 5.7 8.7 5.9 0.2 2.6 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.1 gi|330508606|ref|YP_004385034.1| - 0.55 10.1 2.1 15 5.4 0.4 2.7 2 1 0 2 2 2 0 AAA domain tRNA_anti-codon PF01336.20 gi|330508607|ref|YP_004385035.1| - 8.1e-22 76.8 5.2 9.9e-09 34.9 0.1 3.5 3 1 0 3 3 3 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|330508607|ref|YP_004385035.1| - 0.0048 16.6 0.0 9.8 5.8 0.0 3.1 3 0 0 3 3 3 2 Replication factor-A C terminal domain PRC PF05239.11 gi|330508607|ref|YP_004385035.1| - 0.08 12.8 1.5 3 7.7 0.0 3.0 3 0 0 3 3 3 0 PRC-barrel domain Rad51 PF08423.6 gi|330508608|ref|YP_004385036.1| - 2.2e-87 292.2 0.0 2.7e-87 291.9 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|330508608|ref|YP_004385036.1| - 4.7e-13 49.1 3.1 9.4e-13 48.1 1.8 1.8 2 0 0 2 2 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|330508608|ref|YP_004385036.1| - 1.8e-10 40.5 0.0 2.7e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|330508608|ref|YP_004385036.1| - 2.6e-10 39.8 0.0 0.00022 20.3 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.18 gi|330508608|ref|YP_004385036.1| - 3.1e-07 29.7 5.1 0.00034 20.1 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif KaiC PF06745.8 gi|330508608|ref|YP_004385036.1| - 9.1e-07 28.2 0.0 1.5e-06 27.4 0.0 1.3 1 1 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|330508608|ref|YP_004385036.1| - 5.2e-06 26.2 0.2 1.4e-05 24.8 0.2 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|330508608|ref|YP_004385036.1| - 2.8e-05 23.9 0.0 6.1e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus AAA PF00004.24 gi|330508608|ref|YP_004385036.1| - 6.8e-05 23.0 0.0 0.0002 21.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|330508608|ref|YP_004385036.1| - 0.00023 20.7 0.0 0.00044 19.8 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain DNA_pol_lambd_f PF10391.4 gi|330508608|ref|YP_004385036.1| - 0.00081 18.8 0.0 0.004 16.6 0.0 2.1 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.3 gi|330508608|ref|YP_004385036.1| - 0.0048 16.8 0.0 0.021 14.8 0.0 2.2 1 0 0 1 1 1 1 IMS family HHH motif AAA_24 PF13479.1 gi|330508608|ref|YP_004385036.1| - 0.043 13.3 0.0 0.089 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|330508608|ref|YP_004385036.1| - 0.048 13.3 0.0 0.086 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|330508608|ref|YP_004385036.1| - 0.06 13.0 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase CobU PF02283.11 gi|330508608|ref|YP_004385036.1| - 0.063 12.6 0.0 0.28 10.5 0.0 1.8 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase DUF4332 PF14229.1 gi|330508608|ref|YP_004385036.1| - 0.076 12.9 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) AAA_22 PF13401.1 gi|330508608|ref|YP_004385036.1| - 0.11 12.6 0.1 0.32 11.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain NosD PF05048.8 gi|330508609|ref|YP_004385037.1| - 1.1e-23 83.6 35.1 2.3e-13 49.8 12.0 2.9 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|330508609|ref|YP_004385037.1| - 6.4e-18 64.9 45.3 3.6e-11 43.0 20.4 2.7 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|330508609|ref|YP_004385037.1| - 7.2e-05 22.0 19.1 0.13 11.4 13.2 4.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) DUF2114 PF09887.4 gi|330508610|ref|YP_004385038.1| - 9.7e-213 706.4 2.0 1.1e-212 706.1 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) DNA_primase_lrg PF04104.9 gi|330508611|ref|YP_004385039.1| - 1e-06 28.2 0.1 2.9e-06 26.7 0.0 1.7 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF2239 PF09998.4 gi|330508611|ref|YP_004385039.1| - 0.12 12.0 0.0 0.27 10.8 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2239) Y_Y_Y PF07495.8 gi|330508612|ref|YP_004385040.1| - 0.024 14.3 0.0 0.069 12.9 0.0 1.8 1 0 0 1 1 1 0 Y_Y_Y domain Acylphosphatase PF00708.13 gi|330508613|ref|YP_004385041.1| - 2.1e-18 66.2 0.2 8.2e-18 64.3 0.0 2.1 2 1 1 3 3 3 1 Acylphosphatase HSBP1 PF06825.7 gi|330508613|ref|YP_004385041.1| - 2.2e-06 27.1 4.2 0.00042 19.8 0.4 2.7 1 1 1 2 2 2 2 Heat shock factor binding protein 1 Baculo_PEP_C PF04513.7 gi|330508613|ref|YP_004385041.1| - 0.00051 19.8 7.9 0.0084 15.9 3.1 2.7 2 1 1 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1359 PF07097.6 gi|330508613|ref|YP_004385041.1| - 0.0011 18.9 3.0 0.002 18.1 2.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1359) Apolipoprotein PF01442.13 gi|330508613|ref|YP_004385041.1| - 0.0038 16.7 0.8 0.0075 15.7 0.6 1.5 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF4455 PF14643.1 gi|330508613|ref|YP_004385041.1| - 0.0061 15.2 1.1 0.016 13.8 0.2 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4455) Lumazine_bd PF12870.2 gi|330508613|ref|YP_004385041.1| - 0.0089 16.0 1.2 0.021 14.8 0.2 2.1 1 1 1 2 2 2 1 Lumazine-binding domain MazG-like PF12643.2 gi|330508613|ref|YP_004385041.1| - 0.028 14.3 0.2 0.058 13.3 0.1 1.6 1 1 0 1 1 1 0 MazG-like family DUF4164 PF13747.1 gi|330508613|ref|YP_004385041.1| - 0.033 14.3 4.2 2.8 8.1 2.9 3.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) DUF1664 PF07889.7 gi|330508613|ref|YP_004385041.1| - 0.033 13.9 9.7 0.29 10.9 5.1 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF3450 PF11932.3 gi|330508613|ref|YP_004385041.1| - 0.035 13.3 3.9 0.059 12.6 2.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Fib_alpha PF08702.5 gi|330508613|ref|YP_004385041.1| - 0.037 14.1 6.0 0.066 13.3 4.2 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Gp-FAR-1 PF05823.7 gi|330508613|ref|YP_004385041.1| - 0.052 13.5 1.3 0.11 12.5 0.8 1.6 1 1 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) LON PF02190.11 gi|330508613|ref|YP_004385041.1| - 0.078 12.6 1.0 0.15 11.7 0.7 1.5 1 1 0 1 1 1 0 ATP-dependent protease La (LON) domain Phasin PF05597.6 gi|330508613|ref|YP_004385041.1| - 0.078 12.7 3.4 2.1 8.1 0.1 2.5 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Fzo_mitofusin PF04799.8 gi|330508613|ref|YP_004385041.1| - 0.12 11.7 3.2 0.23 10.8 0.7 2.0 1 1 1 2 2 2 0 fzo-like conserved region Peptidase_M75 PF09375.5 gi|330508613|ref|YP_004385041.1| - 0.13 11.5 3.3 2.3 7.4 1.1 2.1 1 1 1 2 2 2 0 Imelysin YtxH PF12732.2 gi|330508613|ref|YP_004385041.1| - 0.18 12.1 3.5 2 8.8 2.4 2.5 1 1 0 1 1 1 0 YtxH-like protein TBCA PF02970.11 gi|330508613|ref|YP_004385041.1| - 0.23 11.5 4.7 1 9.5 1.2 2.4 1 1 1 2 2 2 0 Tubulin binding cofactor A Phage_GPO PF05929.6 gi|330508613|ref|YP_004385041.1| - 0.45 9.7 4.1 1.2 8.3 0.4 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase CagA PF03507.8 gi|330508613|ref|YP_004385041.1| - 0.7 9.7 6.4 0.88 9.3 1.9 2.1 1 1 1 2 2 2 0 CagA exotoxin Herpes_UL14 PF03580.9 gi|330508613|ref|YP_004385041.1| - 0.71 9.6 5.1 3.3 7.5 0.6 2.5 1 1 1 2 2 2 0 Herpesvirus UL14-like protein DUF1640 PF07798.6 gi|330508613|ref|YP_004385041.1| - 0.9 9.5 11.5 1.1 9.3 7.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) PMC2NT PF08066.7 gi|330508613|ref|YP_004385041.1| - 3.8 7.8 8.5 5.8 7.2 3.4 2.3 1 1 1 2 2 2 0 PMC2NT (NUC016) domain NPV_P10 PF05531.7 gi|330508613|ref|YP_004385041.1| - 5.6 7.2 10.3 2.2e+02 2.1 7.1 3.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DDE_Tnp_IS66 PF03050.9 gi|330508614|ref|YP_004385042.1| - 2e-54 184.6 0.2 3e-54 184.0 0.0 1.3 2 0 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.2 gi|330508614|ref|YP_004385042.1| - 7.7e-06 25.7 6.0 1.2e-05 25.2 3.3 2.0 1 1 1 2 2 2 1 zinc-finger binding domain of transposase IS66 DZR PF12773.2 gi|330508614|ref|YP_004385042.1| - 0.0011 18.7 1.5 0.0023 17.7 1.1 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330508614|ref|YP_004385042.1| - 0.005 16.0 5.9 1.3 8.3 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DDE_Tnp_IS240 PF13610.1 gi|330508614|ref|YP_004385042.1| - 0.0066 16.4 0.0 0.017 15.1 0.0 1.7 1 0 0 1 1 1 1 DDE domain DUF972 PF06156.8 gi|330508614|ref|YP_004385042.1| - 0.075 13.3 1.3 0.2 11.9 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF972) DivIC PF04977.10 gi|330508614|ref|YP_004385042.1| - 0.092 12.2 1.3 0.26 10.7 0.9 1.7 1 0 0 1 1 1 0 Septum formation initiator Terminase_GpA PF05876.7 gi|330508614|ref|YP_004385042.1| - 0.17 10.1 1.1 0.28 9.4 0.7 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) GOLGA2L5 PF15070.1 gi|330508614|ref|YP_004385042.1| - 0.18 10.2 0.3 0.27 9.6 0.2 1.2 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 zinc_ribbon_2 PF13240.1 gi|330508614|ref|YP_004385042.1| - 0.42 10.1 4.2 1.5 8.3 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HALZ PF02183.13 gi|330508614|ref|YP_004385042.1| - 1.2 8.8 8.2 1.4 8.7 3.3 2.5 2 0 0 2 2 2 0 Homeobox associated leucine zipper UPF0547 PF10571.4 gi|330508614|ref|YP_004385042.1| - 1.3 8.7 8.6 5.1 6.8 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TSC22 PF01166.13 gi|330508614|ref|YP_004385042.1| - 2.6 8.0 5.9 2.7 8.0 2.3 2.3 2 1 0 2 2 2 0 TSC-22/dip/bun family DEAD PF00270.24 gi|330508615|ref|YP_004385043.1| - 2.7e-24 85.5 0.0 5.4e-24 84.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|330508615|ref|YP_004385043.1| - 1.8e-11 43.7 0.0 4.1e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|330508615|ref|YP_004385043.1| - 3.2e-05 23.8 0.0 6.2e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_34 PF13872.1 gi|330508615|ref|YP_004385043.1| - 0.0078 15.0 0.0 0.014 14.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 CcmH PF03918.9 gi|330508615|ref|YP_004385043.1| - 0.026 13.5 0.0 0.067 12.1 0.0 1.6 1 0 0 1 1 1 0 Cytochrome C biogenesis protein K-box PF01486.12 gi|330508615|ref|YP_004385043.1| - 0.088 12.6 1.6 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 K-box region DSHCT PF08148.7 gi|330508615|ref|YP_004385043.1| - 0.1 11.8 0.0 0.28 10.3 0.0 1.7 1 0 0 1 1 1 0 DSHCT (NUC185) domain MarR_2 PF12802.2 gi|330508616|ref|YP_004385044.1| - 3.8e-09 36.0 0.2 1.2e-08 34.4 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|330508616|ref|YP_004385044.1| - 3.1e-08 33.8 0.0 7.8e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|330508616|ref|YP_004385044.1| - 1.2e-06 27.7 0.1 3.1e-06 26.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|330508616|ref|YP_004385044.1| - 8.6e-06 25.3 0.1 2.6e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|330508616|ref|YP_004385044.1| - 1.4e-05 24.7 0.2 0.00084 19.0 0.0 2.8 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_45 PF14947.1 gi|330508616|ref|YP_004385044.1| - 0.00051 19.7 0.0 0.00084 19.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_3 PF01381.17 gi|330508616|ref|YP_004385044.1| - 0.00052 19.8 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_11 PF08279.7 gi|330508616|ref|YP_004385044.1| - 0.0018 17.9 0.0 0.0053 16.3 0.0 1.8 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|330508616|ref|YP_004385044.1| - 0.0049 16.9 0.0 0.017 15.2 0.0 1.9 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|330508616|ref|YP_004385044.1| - 0.0063 16.0 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|330508616|ref|YP_004385044.1| - 0.011 15.6 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 Transposase HTH_23 PF13384.1 gi|330508616|ref|YP_004385044.1| - 0.013 15.1 0.0 0.028 14.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MerR_1 PF13411.1 gi|330508616|ref|YP_004385044.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein GntR PF00392.16 gi|330508616|ref|YP_004385044.1| - 0.013 14.8 0.2 0.044 13.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.14 gi|330508616|ref|YP_004385044.1| - 0.016 15.1 0.0 0.054 13.4 0.0 1.9 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF211 PF02680.9 gi|330508616|ref|YP_004385044.1| - 0.037 13.8 0.1 3 7.7 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 HTH_5 PF01022.15 gi|330508616|ref|YP_004385044.1| - 0.052 13.2 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|330508616|ref|YP_004385044.1| - 0.052 13.2 0.1 0.18 11.5 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB EAP30 PF04157.11 gi|330508616|ref|YP_004385044.1| - 0.1 11.7 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family Mnd1 PF03962.10 gi|330508616|ref|YP_004385044.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Mnd1 family HTH_17 PF12728.2 gi|330508616|ref|YP_004385044.1| - 0.12 12.6 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|330508616|ref|YP_004385044.1| - 0.12 12.5 0.0 0.53 10.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Mga PF08280.6 gi|330508616|ref|YP_004385044.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain ArsR PF09824.4 gi|330508617|ref|YP_004385045.1| - 1.1e-65 219.9 0.0 1.2e-65 219.7 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_20 PF12840.2 gi|330508617|ref|YP_004385045.1| - 0.002 17.8 0.0 0.0063 16.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|330508617|ref|YP_004385045.1| - 0.076 12.6 0.0 2.8 7.6 0.0 2.4 2 0 0 2 2 2 0 MarR family Beta-Casp PF10996.3 gi|330508618|ref|YP_004385046.1| - 3.8e-33 114.0 0.0 1.3e-32 112.4 0.0 1.9 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|330508618|ref|YP_004385046.1| - 1.7e-23 83.3 0.3 3e-23 82.4 0.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|330508618|ref|YP_004385046.1| - 1.3e-11 44.0 0.0 4e-11 42.5 0.0 1.9 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|330508618|ref|YP_004385046.1| - 3.2e-07 30.0 0.0 6.5e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|330508618|ref|YP_004385046.1| - 2.7e-05 23.6 0.3 0.0028 17.1 0.0 3.1 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|330508618|ref|YP_004385046.1| - 7.1e-05 22.5 0.0 0.00022 20.9 0.0 1.8 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|330508618|ref|YP_004385046.1| - 0.0003 20.3 0.1 0.00085 18.9 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|330508618|ref|YP_004385046.1| - 0.00046 19.7 0.6 0.0031 17.1 0.0 2.4 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|330508618|ref|YP_004385046.1| - 0.095 12.3 0.3 0.37 10.4 0.2 2.1 1 0 0 1 1 1 0 KH domain Proteasome PF00227.21 gi|330508619|ref|YP_004385047.1| - 3.8e-53 179.6 0.6 4.3e-53 179.4 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF63 PF01889.12 gi|330508620|ref|YP_004385048.1| - 4.8e-91 305.6 8.1 5.4e-91 305.4 5.6 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Borrelia_P13 PF05628.7 gi|330508620|ref|YP_004385048.1| - 4.3 7.1 6.7 3.8 7.3 2.2 2.4 1 1 0 2 2 2 0 Borrelia membrane protein P13 DDE_Tnp_ISAZ013 PF07592.6 gi|330508622|ref|YP_004385050.1| - 1.9e-135 450.5 0.0 2.3e-135 450.3 0.0 1.0 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain HTH_Tnp_Tc3_2 PF01498.13 gi|330508622|ref|YP_004385050.1| - 5.9e-06 26.2 0.0 1.7e-05 24.7 0.0 1.8 1 0 0 1 1 1 1 Transposase HTH_29 PF13551.1 gi|330508622|ref|YP_004385050.1| - 6.2e-06 26.3 0.1 1.5e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_21 PF13276.1 gi|330508622|ref|YP_004385050.1| - 0.00052 19.9 0.0 0.0011 18.8 0.0 1.6 1 0 0 1 1 1 1 HTH-like domain HTH_32 PF13565.1 gi|330508622|ref|YP_004385050.1| - 0.00067 20.3 0.4 0.0024 18.6 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain GSH-S_N PF02951.9 gi|330508622|ref|YP_004385050.1| - 0.0019 17.9 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain HTH_36 PF13730.1 gi|330508622|ref|YP_004385050.1| - 0.0098 16.0 0.3 0.94 9.6 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|330508622|ref|YP_004385050.1| - 0.027 14.1 0.6 0.096 12.4 0.0 2.2 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_23 PF13384.1 gi|330508622|ref|YP_004385050.1| - 0.11 12.1 0.0 18 5.1 0.0 2.8 2 0 0 2 2 2 0 Homeodomain-like domain KfrA_N PF11740.3 gi|330508622|ref|YP_004385050.1| - 0.17 12.3 0.0 3.3 8.1 0.0 2.2 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term HTH_28 PF13518.1 gi|330508622|ref|YP_004385050.1| - 0.25 11.3 3.4 2.2 8.3 0.0 2.9 3 0 0 3 3 2 0 Helix-turn-helix domain TPR_12 PF13424.1 gi|330508623|ref|YP_004385051.1| - 1.6e-14 53.5 2.6 1.6e-14 53.5 1.8 2.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330508623|ref|YP_004385051.1| - 2.7e-10 39.3 1.1 2.6e-07 30.0 0.2 3.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330508623|ref|YP_004385051.1| - 3.1e-10 39.5 1.2 3.1e-10 39.5 0.8 2.1 2 0 0 2 2 2 1 TPR repeat TPR_10 PF13374.1 gi|330508623|ref|YP_004385051.1| - 4.3e-09 35.9 1.6 2e-05 24.3 0.3 3.0 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330508623|ref|YP_004385051.1| - 1.3e-08 34.0 1.3 6.1e-08 31.9 0.1 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330508623|ref|YP_004385051.1| - 3.4e-07 29.5 2.0 1.9e-06 27.2 0.2 2.9 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330508623|ref|YP_004385051.1| - 1.1e-06 27.9 9.9 7e-06 25.4 0.1 4.6 4 2 0 4 4 4 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330508623|ref|YP_004385051.1| - 0.00013 22.4 8.5 0.0029 18.2 1.3 2.9 2 1 2 4 4 3 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330508623|ref|YP_004385051.1| - 0.00028 21.1 1.3 0.057 13.9 0.0 3.9 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330508623|ref|YP_004385051.1| - 0.0029 18.1 0.2 0.0029 18.1 0.1 4.0 4 1 0 4 4 3 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|330508623|ref|YP_004385051.1| - 0.025 14.4 0.4 0.21 11.4 0.2 2.4 1 1 0 1 1 1 0 Anaphase-promoting complex subunit 5 TPR_17 PF13431.1 gi|330508623|ref|YP_004385051.1| - 0.038 14.2 0.6 0.71 10.2 0.0 3.3 3 0 0 3 3 2 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|330508623|ref|YP_004385051.1| - 0.064 13.4 0.2 0.25 11.5 0.1 2.1 1 1 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 DUF1803 PF08820.5 gi|330508623|ref|YP_004385051.1| - 0.068 12.8 0.0 0.19 11.4 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1803) PPR PF01535.15 gi|330508623|ref|YP_004385051.1| - 0.11 12.5 0.1 8.4 6.6 0.0 3.2 3 0 0 3 3 3 0 PPR repeat MIT PF04212.13 gi|330508623|ref|YP_004385051.1| - 0.42 10.5 2.9 11 5.9 0.1 2.7 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain TPR_4 PF07721.9 gi|330508623|ref|YP_004385051.1| - 1.1 9.9 0.0 1.1 9.9 0.0 4.5 4 1 0 4 4 4 0 Tetratricopeptide repeat UPF0150 PF03681.10 gi|330508624|ref|YP_004385052.1| - 3.2e-17 61.8 0.1 4.8e-17 61.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Symplekin_C PF12295.3 gi|330508624|ref|YP_004385052.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Symplekin tight junction protein C terminal YcfA PF07927.7 gi|330508625|ref|YP_004385053.1| - 1.4e-16 60.1 0.1 1.6e-16 59.9 0.1 1.1 1 0 0 1 1 1 1 YcfA-like protein DUF1667 PF07892.6 gi|330508625|ref|YP_004385053.1| - 0.025 14.2 0.0 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1667) Prismane PF03063.15 gi|330508627|ref|YP_004385055.1| - 1.3e-176 587.9 0.5 1.5e-176 587.7 0.3 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family GMC_oxred_N PF00732.14 gi|330508627|ref|YP_004385055.1| - 0.038 13.1 0.2 0.073 12.2 0.2 1.4 1 0 0 1 1 1 0 GMC oxidoreductase Fer4_11 PF13247.1 gi|330508628|ref|YP_004385056.1| - 2.8e-20 72.0 17.8 2.5e-19 68.9 9.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330508628|ref|YP_004385056.1| - 4.5e-13 49.3 30.5 2.3e-06 27.9 9.4 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508628|ref|YP_004385056.1| - 2e-11 43.5 22.7 1.1e-06 28.3 5.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330508628|ref|YP_004385056.1| - 6.3e-10 39.1 25.9 5.4e-05 23.3 7.7 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330508628|ref|YP_004385056.1| - 2.7e-09 36.2 35.6 8.8e-05 21.9 2.7 5.1 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330508628|ref|YP_004385056.1| - 1.6e-08 34.0 37.0 0.00011 21.8 1.8 4.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|330508628|ref|YP_004385056.1| - 5.4e-06 26.3 33.0 0.036 14.3 2.5 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330508628|ref|YP_004385056.1| - 5.9e-06 25.8 33.4 0.00015 21.4 1.0 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330508628|ref|YP_004385056.1| - 7.5e-06 25.7 28.0 0.0021 17.9 6.5 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330508628|ref|YP_004385056.1| - 0.00021 21.5 26.3 0.15 12.4 1.2 4.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330508628|ref|YP_004385056.1| - 0.00036 20.4 29.0 0.24 11.4 14.2 3.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330508628|ref|YP_004385056.1| - 0.00099 19.8 28.6 1.2 9.9 1.1 4.5 2 1 3 5 5 5 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|330508628|ref|YP_004385056.1| - 0.0013 19.1 5.3 0.0013 19.1 3.7 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|330508628|ref|YP_004385056.1| - 0.037 13.6 1.1 0.037 13.6 0.8 3.7 1 1 2 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fe_dep_repr_C PF02742.10 gi|330508628|ref|YP_004385056.1| - 0.1 12.3 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain Fer4_18 PF13746.1 gi|330508628|ref|YP_004385056.1| - 0.5 10.8 27.7 0.99 9.8 0.8 4.9 4 1 1 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|330508628|ref|YP_004385056.1| - 2.7 8.4 18.0 2 8.8 0.1 3.6 3 1 0 3 3 3 0 4Fe-4S single cluster domain AMP-binding PF00501.23 gi|330508629|ref|YP_004385057.1| - 1.1e-91 307.3 0.0 1.4e-91 307.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330508629|ref|YP_004385057.1| - 8.1e-23 81.1 4.1 2e-22 79.9 1.4 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain GvpD PF07088.6 gi|330508630|ref|YP_004385058.1| - 2.1e-39 135.1 0.0 3.1e-36 124.7 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein KaiC PF06745.8 gi|330508630|ref|YP_004385058.1| - 3.1e-10 39.5 0.9 1e-08 34.6 0.1 2.8 2 1 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|330508630|ref|YP_004385058.1| - 8.9e-07 28.4 0.0 0.00017 21.0 0.0 3.5 3 1 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|330508630|ref|YP_004385058.1| - 5.9e-05 23.3 0.0 0.00012 22.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330508630|ref|YP_004385058.1| - 9.8e-05 22.4 0.0 0.00019 21.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|330508630|ref|YP_004385058.1| - 0.00021 20.9 0.0 0.0005 19.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|330508630|ref|YP_004385058.1| - 0.00041 20.2 0.1 0.0024 17.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|330508630|ref|YP_004385058.1| - 0.00058 19.3 0.0 0.0082 15.5 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|330508630|ref|YP_004385058.1| - 0.00089 18.2 0.0 0.48 9.2 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|330508630|ref|YP_004385058.1| - 0.0015 18.7 0.0 0.0034 17.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|330508630|ref|YP_004385058.1| - 0.0017 18.5 0.0 0.005 17.0 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|330508630|ref|YP_004385058.1| - 0.0017 17.3 0.0 0.0024 16.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|330508630|ref|YP_004385058.1| - 0.0018 17.8 0.0 0.0025 17.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|330508630|ref|YP_004385058.1| - 0.002 17.6 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain PIF1 PF05970.9 gi|330508630|ref|YP_004385058.1| - 0.0071 15.3 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 PIF1-like helicase AAA_17 PF13207.1 gi|330508630|ref|YP_004385058.1| - 0.0095 16.7 0.0 0.027 15.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|330508630|ref|YP_004385058.1| - 0.011 14.4 0.0 0.018 13.8 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus NACHT PF05729.7 gi|330508630|ref|YP_004385058.1| - 0.02 14.5 0.1 0.046 13.3 0.0 1.6 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.17 gi|330508630|ref|YP_004385058.1| - 0.028 13.2 0.0 0.046 12.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|330508630|ref|YP_004385058.1| - 0.032 14.5 0.0 0.062 13.5 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_5 PF07728.9 gi|330508630|ref|YP_004385058.1| - 0.034 13.8 0.0 0.067 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Viral_helicase1 PF01443.13 gi|330508630|ref|YP_004385058.1| - 0.037 13.5 0.0 0.063 12.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PAXNEB PF05625.6 gi|330508630|ref|YP_004385058.1| - 0.041 12.7 0.0 0.068 11.9 0.0 1.3 1 0 0 1 1 1 0 PAXNEB protein NTPase_1 PF03266.10 gi|330508630|ref|YP_004385058.1| - 0.047 13.3 0.1 0.12 12.0 0.1 1.7 1 0 0 1 1 1 0 NTPase AAA_33 PF13671.1 gi|330508630|ref|YP_004385058.1| - 0.051 13.4 0.0 0.38 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|330508630|ref|YP_004385058.1| - 0.09 12.5 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Arch_ATPase PF01637.13 gi|330508630|ref|YP_004385058.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase FtsK_SpoIIIE PF01580.13 gi|330508630|ref|YP_004385058.1| - 0.17 11.3 0.0 0.36 10.2 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family FaeA PF04703.7 gi|330508631|ref|YP_004385059.1| - 4.2e-05 23.6 0.0 7e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein HTH_IclR PF09339.5 gi|330508631|ref|YP_004385059.1| - 0.0013 18.2 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain LacI PF00356.16 gi|330508631|ref|YP_004385059.1| - 0.0015 18.1 0.8 0.0045 16.5 0.3 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family TrmB PF01978.14 gi|330508631|ref|YP_004385059.1| - 0.0038 16.9 0.1 0.0059 16.2 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|330508631|ref|YP_004385059.1| - 0.0055 16.3 0.0 0.053 13.1 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|330508631|ref|YP_004385059.1| - 0.0083 15.4 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|330508631|ref|YP_004385059.1| - 0.0085 15.7 0.2 0.018 14.6 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_17 PF12728.2 gi|330508631|ref|YP_004385059.1| - 0.035 14.3 0.1 0.18 12.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|330508631|ref|YP_004385059.1| - 0.05 13.8 0.0 0.074 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain EAP30 PF04157.11 gi|330508631|ref|YP_004385059.1| - 0.079 12.0 0.1 0.11 11.6 0.1 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family TBPIP PF07106.8 gi|330508631|ref|YP_004385059.1| - 0.1 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TetR_N PF00440.18 gi|330508631|ref|YP_004385059.1| - 0.11 12.1 0.1 0.46 10.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Fe_dep_repress PF01325.14 gi|330508631|ref|YP_004385059.1| - 0.12 12.3 0.8 0.21 11.5 0.6 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MtrA PF04208.9 gi|330508632|ref|YP_004385060.1| - 9.3e-60 201.0 0.0 1.2e-59 200.7 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrH PF02007.13 gi|330508633|ref|YP_004385061.1| - 1.3e-107 359.1 0.0 1.6e-107 358.9 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit DUF521 PF04412.8 gi|330508634|ref|YP_004385062.1| - 1.2e-148 494.9 0.0 1.3e-148 494.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.11 gi|330508635|ref|YP_004385063.1| - 1.5e-35 120.6 0.1 2e-35 120.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF3417 PF11897.3 gi|330508636|ref|YP_004385064.1| - 7.8e-37 125.8 0.3 3e-36 123.9 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.15 gi|330508636|ref|YP_004385064.1| - 5e-21 74.3 0.0 3.5e-15 54.9 0.0 3.2 2 1 0 2 2 2 2 Carbohydrate phosphorylase C1_2 PF03107.11 gi|330508637|ref|YP_004385065.1| - 0.05 13.7 0.6 0.3 11.2 0.1 2.3 2 0 0 2 2 2 0 C1 domain DUF2116 PF09889.4 gi|330508638|ref|YP_004385066.1| - 4.7e-11 42.3 1.1 5e-11 42.2 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF4014 PF13198.1 gi|330508638|ref|YP_004385066.1| - 0.048 14.0 0.3 0.055 13.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4014) DUF3753 PF12575.3 gi|330508638|ref|YP_004385066.1| - 0.056 13.2 0.2 0.06 13.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3753) Tmemb_9 PF05434.6 gi|330508638|ref|YP_004385066.1| - 0.079 12.7 0.2 0.091 12.5 0.1 1.0 1 0 0 1 1 1 0 TMEM9 Orbi_NS3 PF01616.11 gi|330508638|ref|YP_004385066.1| - 0.1 11.5 0.1 0.1 11.5 0.1 1.0 1 0 0 1 1 1 0 Orbivirus NS3 NosD PF05048.8 gi|330508639|ref|YP_004385067.1| - 6.3e-59 198.9 81.9 3.6e-26 91.7 23.9 4.2 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|330508639|ref|YP_004385067.1| - 6.6e-43 146.1 88.2 3.9e-19 68.9 11.3 4.9 3 1 3 6 6 6 5 Right handed beta helix region Pectinesterase PF01095.14 gi|330508639|ref|YP_004385067.1| - 0.0001 21.0 0.8 0.00044 18.9 0.0 2.3 2 0 0 2 2 2 1 Pectinesterase Sec61_beta PF03911.11 gi|330508640|ref|YP_004385068.1| - 4.4e-09 36.0 0.0 5.2e-09 35.7 0.0 1.1 1 0 0 1 1 1 1 Sec61beta family DoxX PF07681.7 gi|330508640|ref|YP_004385068.1| - 0.031 14.6 0.0 0.033 14.5 0.0 1.1 1 0 0 1 1 1 0 DoxX Pyridoxal_deC PF00282.14 gi|330508641|ref|YP_004385069.1| - 8.3e-32 110.0 0.0 1.3e-31 109.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|330508641|ref|YP_004385069.1| - 4.9e-09 35.4 0.0 1.1e-08 34.2 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|330508641|ref|YP_004385069.1| - 4.7e-07 29.0 0.0 3.6e-06 26.1 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|330508641|ref|YP_004385069.1| - 0.0011 18.2 0.0 0.002 17.3 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|330508641|ref|YP_004385069.1| - 0.0058 15.7 0.0 0.012 14.6 0.0 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family YonK PF09642.5 gi|330508641|ref|YP_004385069.1| - 0.11 12.2 0.0 3.2 7.5 0.0 2.3 2 0 0 2 2 2 0 YonK protein PPDK_N PF01326.14 gi|330508642|ref|YP_004385070.1| - 1e-101 340.2 0.2 1.6e-101 339.6 0.1 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|330508642|ref|YP_004385070.1| - 8.8e-84 280.8 0.3 1.8e-83 279.8 0.0 1.6 2 0 0 2 2 2 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|330508642|ref|YP_004385070.1| - 3.7e-25 87.3 1.2 3.7e-25 87.3 0.8 2.2 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|330508642|ref|YP_004385070.1| - 0.0004 19.3 0.1 0.0011 17.8 0.1 1.7 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family MoeA_N PF03453.12 gi|330508643|ref|YP_004385071.1| - 6.9e-33 113.2 0.6 1.6e-16 60.1 0.1 2.6 3 0 0 3 3 3 2 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|330508643|ref|YP_004385071.1| - 6.5e-29 100.1 0.0 3.2e-28 97.9 0.0 2.1 1 1 1 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|330508643|ref|YP_004385071.1| - 1.6e-14 53.5 1.4 5.2e-14 51.9 0.1 2.6 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) HTH_20 PF12840.2 gi|330508644|ref|YP_004385072.1| - 1.2e-17 63.4 0.4 8.2e-12 44.7 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|330508644|ref|YP_004385072.1| - 6.5e-14 51.3 0.0 4e-08 32.7 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|330508644|ref|YP_004385072.1| - 7.9e-09 35.1 0.2 0.0051 16.4 0.0 2.7 3 0 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|330508644|ref|YP_004385072.1| - 3.5e-05 23.3 0.4 0.026 14.1 0.0 2.4 2 0 0 2 2 2 2 MarR family Fe_dep_repress PF01325.14 gi|330508644|ref|YP_004385072.1| - 0.00012 21.9 0.0 0.34 10.8 0.0 2.7 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|330508644|ref|YP_004385072.1| - 0.00018 21.5 0.0 0.28 11.3 0.0 2.5 2 0 0 2 2 2 2 Transcriptional regulator GntR PF00392.16 gi|330508644|ref|YP_004385072.1| - 0.0002 20.7 0.3 0.68 9.4 0.1 2.7 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|330508644|ref|YP_004385072.1| - 0.00027 20.5 0.0 0.067 12.8 0.0 3.2 3 0 0 3 3 3 1 HTH domain HTH_24 PF13412.1 gi|330508644|ref|YP_004385072.1| - 0.00059 19.1 1.8 0.39 10.1 0.1 3.3 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|330508644|ref|YP_004385072.1| - 0.012 15.1 0.0 0.039 13.5 0.0 1.9 1 0 0 1 1 1 0 LexA DNA binding domain IF2_N PF04760.10 gi|330508644|ref|YP_004385072.1| - 0.019 14.5 0.1 6.1 6.5 0.0 2.5 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF2336 PF10098.4 gi|330508644|ref|YP_004385072.1| - 0.032 13.4 0.9 0.2 10.8 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2336) PadR PF03551.9 gi|330508644|ref|YP_004385072.1| - 0.038 13.7 0.0 0.17 11.7 0.0 2.2 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family EAP30 PF04157.11 gi|330508644|ref|YP_004385072.1| - 0.05 12.7 0.2 4 6.5 0.2 2.4 2 1 0 2 2 2 0 EAP30/Vps36 family DUF2250 PF10007.4 gi|330508644|ref|YP_004385072.1| - 0.052 13.4 0.0 0.38 10.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) FeoC PF09012.5 gi|330508644|ref|YP_004385072.1| - 0.054 13.2 0.0 0.45 10.2 0.0 2.2 2 0 0 2 2 2 0 FeoC like transcriptional regulator MarR PF01047.17 gi|330508644|ref|YP_004385072.1| - 0.063 12.9 0.0 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.1 gi|330508644|ref|YP_004385072.1| - 0.074 12.8 0.1 5.8 6.7 0.0 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain AAA PF00004.24 gi|330508645|ref|YP_004385073.1| - 2e-94 312.7 0.0 1.6e-47 160.9 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|330508645|ref|YP_004385073.1| - 9e-24 83.2 0.0 6e-23 80.6 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|330508645|ref|YP_004385073.1| - 5.3e-15 55.8 0.0 7.4e-07 29.3 0.0 2.8 2 0 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.7 gi|330508645|ref|YP_004385073.1| - 9.5e-13 47.7 0.1 4.4e-07 29.1 0.0 2.9 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|330508645|ref|YP_004385073.1| - 1.9e-11 44.8 0.0 7.4e-05 23.5 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|330508645|ref|YP_004385073.1| - 4e-11 43.1 0.4 0.0043 17.1 0.1 4.0 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|330508645|ref|YP_004385073.1| - 1.1e-10 41.6 0.0 0.00027 20.8 0.0 3.0 3 1 0 3 3 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|330508645|ref|YP_004385073.1| - 1.9e-10 40.2 0.2 9e-10 38.0 0.0 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.1 gi|330508645|ref|YP_004385073.1| - 6.5e-10 39.0 0.0 0.00092 19.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|330508645|ref|YP_004385073.1| - 1.1e-09 38.3 0.0 0.00041 20.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|330508645|ref|YP_004385073.1| - 1.3e-09 37.2 0.1 0.0012 17.6 0.0 3.5 4 0 0 4 4 4 2 TIP49 C-terminus AAA_5 PF07728.9 gi|330508645|ref|YP_004385073.1| - 4.2e-09 36.2 0.9 0.0029 17.3 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|330508645|ref|YP_004385073.1| - 1.4e-07 30.8 0.0 0.0026 16.8 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_25 PF13481.1 gi|330508645|ref|YP_004385073.1| - 3e-07 30.0 5.0 0.44 9.9 0.1 4.4 2 2 1 4 4 4 2 AAA domain AAA_18 PF13238.1 gi|330508645|ref|YP_004385073.1| - 4.8e-07 30.1 0.0 0.032 14.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|330508645|ref|YP_004385073.1| - 8.8e-07 28.5 4.5 0.0021 17.7 0.3 3.3 3 0 0 3 3 2 2 Part of AAA domain AAA_3 PF07726.6 gi|330508645|ref|YP_004385073.1| - 1.1e-06 28.2 0.0 0.016 14.8 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|330508645|ref|YP_004385073.1| - 5e-06 26.5 0.0 0.11 12.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|330508645|ref|YP_004385073.1| - 8e-06 25.3 0.0 0.042 13.2 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|330508645|ref|YP_004385073.1| - 2.6e-05 23.7 0.8 0.12 11.8 0.0 4.2 3 2 0 3 3 3 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|330508645|ref|YP_004385073.1| - 4.8e-05 22.6 1.1 0.11 11.5 0.1 2.8 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|330508645|ref|YP_004385073.1| - 0.00011 22.4 0.0 0.37 11.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter KaiC PF06745.8 gi|330508645|ref|YP_004385073.1| - 0.00012 21.3 0.1 0.96 8.5 0.0 3.2 2 1 1 3 3 3 2 KaiC NACHT PF05729.7 gi|330508645|ref|YP_004385073.1| - 0.00013 21.6 0.2 3.1 7.4 0.0 4.0 4 0 0 4 4 4 1 NACHT domain DUF815 PF05673.8 gi|330508645|ref|YP_004385073.1| - 0.00016 20.7 0.0 0.039 12.8 0.0 2.6 3 0 0 3 3 2 1 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|330508645|ref|YP_004385073.1| - 0.0004 19.4 0.0 0.33 9.8 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|330508645|ref|YP_004385073.1| - 0.00048 20.2 0.0 1.4 9.0 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Viral_helicase1 PF01443.13 gi|330508645|ref|YP_004385073.1| - 0.001 18.6 0.0 0.1 12.0 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Sigma54_activ_2 PF14532.1 gi|330508645|ref|YP_004385073.1| - 0.0012 18.8 0.0 0.85 9.6 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|330508645|ref|YP_004385073.1| - 0.0021 17.8 0.0 3.9 7.1 0.0 3.2 2 1 1 3 3 3 0 Archaeal ATPase UPF0079 PF02367.12 gi|330508645|ref|YP_004385073.1| - 0.0036 16.9 0.5 3.2 7.3 0.0 3.2 3 1 1 4 4 3 0 Uncharacterised P-loop hydrolase UPF0079 AAA_24 PF13479.1 gi|330508645|ref|YP_004385073.1| - 0.004 16.7 0.1 2.2 7.7 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_30 PF13604.1 gi|330508645|ref|YP_004385073.1| - 0.0048 16.4 0.0 1.9 8.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|330508645|ref|YP_004385073.1| - 0.0059 15.8 0.1 0.6 9.3 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_11 PF13086.1 gi|330508645|ref|YP_004385073.1| - 0.0083 15.7 0.0 0.87 9.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain SKI PF01202.17 gi|330508645|ref|YP_004385073.1| - 0.01 15.7 0.0 4.8 7.0 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase CPT PF07931.7 gi|330508645|ref|YP_004385073.1| - 0.015 14.9 0.0 2.7 7.5 0.0 2.9 3 0 0 3 3 2 0 Chloramphenicol phosphotransferase-like protein ResIII PF04851.10 gi|330508645|ref|YP_004385073.1| - 0.02 14.7 0.0 1.9 8.2 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit SRPRB PF09439.5 gi|330508645|ref|YP_004385073.1| - 0.025 13.7 0.0 3.1 6.9 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Parvo_NS1 PF01057.12 gi|330508645|ref|YP_004385073.1| - 0.029 13.2 0.3 3.2 6.5 0.0 2.5 3 0 0 3 3 3 0 Parvovirus non-structural protein NS1 Ribosomal_L7Ae PF01248.21 gi|330508645|ref|YP_004385073.1| - 0.044 13.2 0.0 0.09 12.2 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NTPase_1 PF03266.10 gi|330508645|ref|YP_004385073.1| - 0.063 12.9 2.2 16 5.1 0.0 4.0 3 2 1 4 4 3 0 NTPase NB-ARC PF00931.17 gi|330508645|ref|YP_004385073.1| - 0.063 12.1 0.0 2.6 6.8 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain ATP-synt_ab PF00006.20 gi|330508645|ref|YP_004385073.1| - 0.072 12.5 0.0 5.8 6.3 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Bac_DnaA PF00308.13 gi|330508645|ref|YP_004385073.1| - 0.08 12.5 0.0 9.8 5.7 0.0 3.1 2 2 0 2 2 2 0 Bacterial dnaA protein Miro PF08477.8 gi|330508645|ref|YP_004385073.1| - 0.099 13.1 0.0 5.7 7.4 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein Zot PF05707.7 gi|330508645|ref|YP_004385073.1| - 0.44 9.9 1.1 55 3.1 0.1 3.7 2 2 0 2 2 2 0 Zonular occludens toxin (Zot) Lon_C PF05362.8 gi|330508646|ref|YP_004385074.1| - 4.6e-34 117.5 4.4 7.4e-34 116.8 3.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|330508646|ref|YP_004385074.1| - 2.1e-26 92.6 0.1 5.3e-20 71.5 0.0 2.4 3 0 0 3 3 3 2 AAA domain Mg_chelatase PF01078.16 gi|330508646|ref|YP_004385074.1| - 5.2e-16 58.4 0.0 7e-09 35.1 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|330508646|ref|YP_004385074.1| - 2e-14 53.4 0.0 2.2e-08 33.7 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.9 gi|330508646|ref|YP_004385074.1| - 3.8e-13 49.3 0.1 2.7e-05 23.9 0.0 3.6 3 1 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|330508646|ref|YP_004385074.1| - 5.7e-10 38.5 2.1 0.02 13.7 0.0 3.6 4 0 0 4 4 4 3 MCM2/3/5 family ChlI PF13541.1 gi|330508646|ref|YP_004385074.1| - 2.3e-09 36.8 0.9 4.7e-09 35.7 0.6 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|330508646|ref|YP_004385074.1| - 3.4e-06 27.3 0.0 0.15 12.2 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|330508646|ref|YP_004385074.1| - 7.8e-06 25.9 0.0 0.22 11.5 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.1 gi|330508646|ref|YP_004385074.1| - 4.3e-05 23.6 0.0 0.016 15.3 0.0 2.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|330508646|ref|YP_004385074.1| - 0.00019 20.5 0.0 0.046 12.7 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|330508646|ref|YP_004385074.1| - 0.00031 20.3 0.0 0.23 11.0 0.0 3.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|330508646|ref|YP_004385074.1| - 0.0011 18.5 0.0 0.0029 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330508646|ref|YP_004385074.1| - 0.0027 17.7 0.0 0.72 9.8 0.0 2.8 3 1 1 4 4 3 1 AAA ATPase domain AAA_19 PF13245.1 gi|330508646|ref|YP_004385074.1| - 0.0054 16.4 0.0 0.016 14.9 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|330508646|ref|YP_004385074.1| - 0.0078 16.5 0.0 0.024 14.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|330508646|ref|YP_004385074.1| - 0.018 14.9 0.1 2.3 8.1 0.0 3.0 3 0 0 3 3 2 0 AAA domain (Cdc48 subfamily) FtsK_SpoIIIE PF01580.13 gi|330508646|ref|YP_004385074.1| - 0.024 14.0 0.4 0.19 11.1 0.0 2.4 2 1 1 3 3 3 0 FtsK/SpoIIIE family AsiA PF09010.5 gi|330508646|ref|YP_004385074.1| - 0.051 13.4 0.5 4 7.3 0.0 2.6 2 0 0 2 2 2 0 Anti-Sigma Factor A DUF2101 PF09874.4 gi|330508646|ref|YP_004385074.1| - 0.053 13.0 0.1 0.088 12.2 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) TraL PF07178.6 gi|330508646|ref|YP_004385074.1| - 0.055 13.5 0.5 0.12 12.3 0.3 1.5 1 0 0 1 1 1 0 TraL protein AAA_17 PF13207.1 gi|330508646|ref|YP_004385074.1| - 0.14 12.9 0.0 0.79 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain PmbA_TldD PF01523.11 gi|330508647|ref|YP_004385075.1| - 1.2e-70 238.0 0.3 1.7e-70 237.6 0.2 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase SNase PF00565.12 gi|330508648|ref|YP_004385076.1| - 2.6e-05 24.4 0.0 5.6e-05 23.3 0.0 1.6 1 1 0 1 1 1 1 Staphylococcal nuclease homologue TRIC PF05197.8 gi|330508649|ref|YP_004385077.1| - 0.069 12.5 0.1 0.084 12.2 0.1 1.2 1 0 0 1 1 1 0 TRIC channel CbiK PF06180.6 gi|330508650|ref|YP_004385078.1| - 1.8e-54 184.6 0.0 9.5e-53 178.9 0.0 2.0 1 1 0 1 1 1 1 Cobalt chelatase (CbiK) CbiX PF01903.12 gi|330508650|ref|YP_004385078.1| - 5.2e-09 36.1 0.0 0.00018 21.6 0.0 2.9 2 1 0 2 2 2 2 CbiX CMD PF02627.15 gi|330508651|ref|YP_004385079.1| - 1e-15 57.3 0.1 1.4e-15 56.9 0.1 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family FmdE PF02663.9 gi|330508652|ref|YP_004385080.1| - 2.1e-39 134.3 0.0 2.6e-39 134.0 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|330508652|ref|YP_004385080.1| - 7e-07 28.8 1.7 1.6e-06 27.7 1.1 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.17 gi|330508652|ref|YP_004385080.1| - 0.041 13.9 0.8 0.1 12.7 0.1 1.9 2 0 0 2 2 2 0 LIM domain Zn-ribbon_8 PF09723.5 gi|330508652|ref|YP_004385080.1| - 0.052 13.5 1.3 0.084 12.8 0.4 1.8 2 0 0 2 2 2 0 Zinc ribbon domain XPA_N PF01286.13 gi|330508652|ref|YP_004385080.1| - 0.058 13.0 0.8 0.17 11.5 0.5 1.8 1 0 0 1 1 1 0 XPA protein N-terminal DUF2318 PF10080.4 gi|330508652|ref|YP_004385080.1| - 1.9 8.3 4.9 4.3 7.1 0.1 2.4 2 1 0 2 2 2 0 Predicted membrane protein (DUF2318) MarR_2 PF12802.2 gi|330508654|ref|YP_004385082.1| - 7.5e-07 28.7 0.2 1.8e-06 27.5 0.1 1.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|330508654|ref|YP_004385082.1| - 3.2e-05 23.5 0.2 6.7e-05 22.5 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|330508654|ref|YP_004385082.1| - 8.3e-05 22.8 0.5 0.00018 21.7 0.3 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|330508654|ref|YP_004385082.1| - 0.0001 21.5 1.4 0.001 18.3 0.4 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|330508654|ref|YP_004385082.1| - 0.00041 19.8 0.0 0.00082 18.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|330508654|ref|YP_004385082.1| - 0.00059 19.4 0.5 0.0017 18.0 0.3 1.8 2 0 0 2 2 2 1 MarR family B-block_TFIIIC PF04182.7 gi|330508654|ref|YP_004385082.1| - 0.009 15.8 0.1 0.035 13.9 0.1 1.9 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC DUF387 PF04079.11 gi|330508654|ref|YP_004385082.1| - 0.044 13.1 0.4 7.8 5.8 0.0 2.3 2 0 0 2 2 2 0 Putative transcriptional regulators (Ypuh-like) Trp_oprn_chp PF09534.5 gi|330508654|ref|YP_004385082.1| - 0.046 13.3 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3529 PF12046.3 gi|330508654|ref|YP_004385082.1| - 0.08 11.9 0.0 0.14 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) Trans_reg_C PF00486.23 gi|330508654|ref|YP_004385082.1| - 0.09 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal DUF4134 PF13572.1 gi|330508654|ref|YP_004385082.1| - 0.11 12.6 0.4 0.31 11.2 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4134) P12 PF12669.2 gi|330508654|ref|YP_004385082.1| - 0.35 11.1 1.6 1.6 9.0 0.0 2.3 2 0 0 2 2 2 0 Virus attachment protein p12 family HTH_20 PF12840.2 gi|330508655|ref|YP_004385083.1| - 2.2e-06 27.3 0.6 4e-06 26.5 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HemN_C PF06969.11 gi|330508655|ref|YP_004385083.1| - 0.004 17.1 0.4 0.0063 16.5 0.3 1.4 1 1 0 1 1 1 1 HemN C-terminal domain ArsR PF09824.4 gi|330508655|ref|YP_004385083.1| - 0.069 12.4 0.0 0.084 12.1 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_Crp_2 PF13545.1 gi|330508655|ref|YP_004385083.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain AAA_assoc_C PF09821.4 gi|330508655|ref|YP_004385083.1| - 0.12 12.6 0.1 0.21 11.8 0.1 1.4 1 1 0 1 1 1 0 C-terminal AAA-associated domain tRNA_int_endo PF01974.12 gi|330508656|ref|YP_004385084.1| - 9.3e-48 159.9 0.1 9.3e-24 83.0 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|330508656|ref|YP_004385084.1| - 6.9e-39 131.2 0.4 5e-20 70.8 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|330508656|ref|YP_004385084.1| - 0.0066 15.8 0.2 1.9 7.9 0.0 2.4 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term APS_kinase PF01583.15 gi|330508658|ref|YP_004385086.1| - 1.2e-19 70.4 0.3 1.6e-19 70.0 0.2 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|330508658|ref|YP_004385086.1| - 2.1e-07 30.9 0.3 2.8e-07 30.4 0.2 1.1 1 0 0 1 1 1 1 AAA domain CPT PF07931.7 gi|330508658|ref|YP_004385086.1| - 0.00011 21.8 0.0 0.00017 21.2 0.0 1.2 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.1 gi|330508658|ref|YP_004385086.1| - 0.00066 19.9 1.5 0.0012 19.1 1.0 1.4 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|330508658|ref|YP_004385086.1| - 0.014 14.5 0.2 0.016 14.4 0.1 1.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MC1 PF05854.6 gi|330508659|ref|YP_004385087.1| - 1.9e-45 152.7 0.9 2.3e-45 152.5 0.6 1.1 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Ribosomal_60s PF00428.14 gi|330508660|ref|YP_004385088.1| - 1.3e-15 57.5 18.7 1.6e-15 57.2 12.9 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein Stm1_N PF09598.5 gi|330508660|ref|YP_004385088.1| - 0.11 13.2 0.6 0.13 12.9 0.4 1.3 1 0 0 1 1 1 0 Stm1 Ribosomal_L10 PF00466.15 gi|330508661|ref|YP_004385089.1| - 4.6e-21 74.6 0.0 9.6e-21 73.5 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|330508661|ref|YP_004385089.1| - 4.2e-07 30.2 10.4 4.2e-07 30.2 7.2 2.3 3 0 0 3 3 3 1 60s Acidic ribosomal protein Ribosomal_L1 PF00687.16 gi|330508662|ref|YP_004385090.1| - 3.1e-50 170.5 0.0 3.6e-50 170.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.9 gi|330508663|ref|YP_004385091.1| - 1.8e-23 81.7 1.0 2.8e-23 81.1 0.7 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|330508663|ref|YP_004385091.1| - 6.7e-18 64.6 1.0 3.3e-17 62.3 1.0 1.8 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.8 gi|330508664|ref|YP_004385092.1| - 2.6e-23 81.5 0.1 3.7e-23 81.0 0.1 1.2 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|330508664|ref|YP_004385092.1| - 2.5e-08 33.3 0.4 3.1e-06 26.6 0.0 2.5 2 0 0 2 2 2 2 KOW motif NusG PF02357.14 gi|330508664|ref|YP_004385092.1| - 5e-05 23.4 0.1 0.00024 21.2 0.0 2.1 2 1 0 2 2 2 1 Transcription termination factor nusG HTH_23 PF13384.1 gi|330508665|ref|YP_004385093.1| - 3.4e-06 26.5 0.0 0.04 13.5 0.0 2.8 2 0 0 2 2 2 2 Homeodomain-like domain GerE PF00196.14 gi|330508665|ref|YP_004385093.1| - 0.00028 20.1 0.1 0.28 10.5 0.0 3.1 3 1 1 4 4 4 2 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|330508665|ref|YP_004385093.1| - 0.00029 20.3 0.0 0.028 13.9 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|330508665|ref|YP_004385093.1| - 0.00043 19.6 0.0 0.047 13.1 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|330508665|ref|YP_004385093.1| - 0.0017 18.1 0.2 0.032 14.0 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix CENP-B_N PF04218.8 gi|330508665|ref|YP_004385093.1| - 0.0046 16.3 0.0 0.14 11.6 0.0 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain HTH_29 PF13551.1 gi|330508665|ref|YP_004385093.1| - 0.014 15.5 0.2 3.8 7.6 0.0 2.8 2 1 0 2 2 2 0 Winged helix-turn helix HTH_5 PF01022.15 gi|330508665|ref|YP_004385093.1| - 0.016 14.8 0.0 0.041 13.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Tnp_1 PF01527.15 gi|330508665|ref|YP_004385093.1| - 0.02 14.8 0.0 0.064 13.2 0.0 1.8 2 0 0 2 2 2 0 Transposase GcrA PF07750.6 gi|330508665|ref|YP_004385093.1| - 0.034 14.3 0.0 0.046 13.9 0.0 1.4 1 0 0 1 1 1 0 GcrA cell cycle regulator HTH_7 PF02796.10 gi|330508665|ref|YP_004385093.1| - 0.038 13.8 0.0 10 6.0 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_17 PF12728.2 gi|330508665|ref|YP_004385093.1| - 0.062 13.5 0.2 0.35 11.1 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|330508665|ref|YP_004385093.1| - 0.064 12.5 0.4 0.53 9.6 0.0 2.7 3 1 0 3 3 3 0 Sigma-70, region 4 Sigma70_ECF PF07638.6 gi|330508665|ref|YP_004385093.1| - 0.073 12.7 0.3 0.25 10.9 0.0 2.1 2 1 0 2 2 2 0 ECF sigma factor NUMOD1 PF07453.8 gi|330508665|ref|YP_004385093.1| - 0.12 12.2 0.0 3.4 7.6 0.0 2.6 3 0 0 3 3 3 0 NUMOD1 domain DUF746 PF05344.6 gi|330508665|ref|YP_004385093.1| - 0.13 11.7 0.0 2.6 7.6 0.0 2.5 3 0 0 3 3 3 0 Domain of Unknown Function (DUF746) HTH_45 PF14947.1 gi|330508666|ref|YP_004385094.1| - 4.1e-23 81.0 0.9 4.4e-23 80.8 0.6 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|330508666|ref|YP_004385094.1| - 0.0028 17.3 0.0 0.0038 16.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.1 gi|330508666|ref|YP_004385094.1| - 0.0066 16.0 0.0 0.0074 15.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF3116 PF11313.3 gi|330508666|ref|YP_004385094.1| - 0.037 13.6 0.2 1.1 8.9 0.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) GerE PF00196.14 gi|330508666|ref|YP_004385094.1| - 0.057 12.7 0.0 0.072 12.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HxlR PF01638.12 gi|330508666|ref|YP_004385094.1| - 0.1 12.2 0.1 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF2250 PF10007.4 gi|330508666|ref|YP_004385094.1| - 0.13 12.1 0.1 0.42 10.5 0.0 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) UPF0020 PF01170.13 gi|330508667|ref|YP_004385095.1| - 5.5e-24 84.7 0.0 7.5e-24 84.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.12 gi|330508667|ref|YP_004385095.1| - 9.8e-09 35.2 0.1 1.7e-08 34.4 0.1 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_26 PF13659.1 gi|330508667|ref|YP_004385095.1| - 8.5e-08 32.2 0.0 1.8e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|330508667|ref|YP_004385095.1| - 0.029 13.8 0.0 0.082 12.3 0.0 1.7 2 0 0 2 2 2 0 DNA methylase Cons_hypoth95 PF03602.10 gi|330508667|ref|YP_004385095.1| - 0.039 13.3 0.0 0.067 12.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Syntaxin-6_N PF09177.6 gi|330508667|ref|YP_004385095.1| - 0.14 12.5 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 Syntaxin 6, N-terminal APH PF01636.18 gi|330508668|ref|YP_004385096.1| - 3.9e-08 33.3 0.1 5.8e-08 32.7 0.1 1.4 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|330508668|ref|YP_004385096.1| - 0.0065 15.8 0.0 0.016 14.5 0.0 1.6 1 0 0 1 1 1 1 RIO1 family AdoHcyase PF05221.12 gi|330508669|ref|YP_004385097.1| - 4e-66 222.7 0.0 4.4e-66 222.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|330508669|ref|YP_004385097.1| - 3.7e-52 176.4 0.1 7.2e-52 175.4 0.0 1.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|330508669|ref|YP_004385097.1| - 6e-09 35.3 0.1 1.2e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|330508669|ref|YP_004385097.1| - 5.6e-06 25.8 0.0 1e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|330508669|ref|YP_004385097.1| - 0.00083 19.3 0.0 0.0033 17.3 0.0 2.0 2 0 0 2 2 2 1 TrkA-N domain Pyr_redox_2 PF07992.9 gi|330508669|ref|YP_004385097.1| - 0.047 13.5 0.2 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|330508669|ref|YP_004385097.1| - 0.053 13.0 0.2 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amidohydro_1 PF01979.15 gi|330508670|ref|YP_004385098.1| - 3.6e-46 158.3 0.0 4.4e-46 158.0 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|330508670|ref|YP_004385098.1| - 6.2e-14 52.6 0.0 6.5e-09 36.2 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|330508670|ref|YP_004385098.1| - 5.7e-11 42.0 0.0 1.6e-10 40.6 0.0 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|330508670|ref|YP_004385098.1| - 2.4e-07 30.3 0.5 3.4e-05 23.2 0.0 2.8 3 1 1 4 4 4 2 Amidohydrolase family A_deaminase PF00962.17 gi|330508670|ref|YP_004385098.1| - 0.041 12.7 0.0 0.072 11.9 0.0 1.3 1 0 0 1 1 1 0 Adenosine/AMP deaminase D-aminoacyl_C PF07908.7 gi|330508670|ref|YP_004385098.1| - 0.077 12.3 0.1 0.21 10.9 0.1 1.7 1 0 0 1 1 1 0 D-aminoacylase, C-terminal region HATPase_c_4 PF13749.1 gi|330508671|ref|YP_004385099.1| - 3.1e-19 68.5 0.0 9e-19 67.0 0.0 1.8 2 0 0 2 2 2 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|330508671|ref|YP_004385099.1| - 1.2e-15 57.7 0.0 2e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Divergent AAA domain HTH_24 PF13412.1 gi|330508671|ref|YP_004385099.1| - 7.1e-08 31.7 0.7 5.4e-06 25.6 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|330508671|ref|YP_004385099.1| - 8.1e-07 28.6 0.8 0.00065 19.3 0.0 2.9 3 0 0 3 3 3 2 MarR family TrmB PF01978.14 gi|330508671|ref|YP_004385099.1| - 1.8e-06 27.5 0.2 0.049 13.3 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|330508671|ref|YP_004385099.1| - 4.4e-06 26.4 0.8 0.016 14.9 0.1 2.8 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_IclR PF09339.5 gi|330508671|ref|YP_004385099.1| - 8e-06 25.3 0.7 0.0011 18.5 0.0 2.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|330508671|ref|YP_004385099.1| - 0.0002 20.8 0.7 0.022 14.3 0.0 3.4 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330508671|ref|YP_004385099.1| - 0.0004 20.3 1.6 0.0014 18.5 0.0 2.8 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|330508671|ref|YP_004385099.1| - 0.0031 17.7 1.1 0.0092 16.2 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|330508671|ref|YP_004385099.1| - 0.0097 15.7 0.1 0.5 10.2 0.0 2.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) PaaX PF07848.7 gi|330508671|ref|YP_004385099.1| - 0.01 15.8 0.1 0.038 13.9 0.0 2.0 2 0 0 2 2 1 0 PaaX-like protein FeoC PF09012.5 gi|330508671|ref|YP_004385099.1| - 0.016 14.9 0.0 0.044 13.4 0.0 1.7 2 0 0 2 2 1 0 FeoC like transcriptional regulator HTH_DeoR PF08220.7 gi|330508671|ref|YP_004385099.1| - 0.051 13.1 0.0 0.14 11.7 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_29 PF13551.1 gi|330508671|ref|YP_004385099.1| - 0.059 13.5 0.4 0.79 9.8 0.0 2.7 2 0 0 2 2 2 0 Winged helix-turn helix EAP30 PF04157.11 gi|330508671|ref|YP_004385099.1| - 0.066 12.3 0.0 1.5 7.8 0.0 2.3 2 0 0 2 2 2 0 EAP30/Vps36 family Penicillinase_R PF03965.11 gi|330508671|ref|YP_004385099.1| - 0.071 13.1 0.1 0.4 10.7 0.0 2.3 2 1 1 3 3 3 0 Penicillinase repressor SgrR_N PF12793.2 gi|330508671|ref|YP_004385099.1| - 0.073 13.0 0.0 0.26 11.3 0.0 1.8 2 0 0 2 2 2 0 Sugar transport-related sRNA regulator N-term Fe_dep_repress PF01325.14 gi|330508671|ref|YP_004385099.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Abi PF02517.11 gi|330508672|ref|YP_004385100.1| - 1.2e-07 31.6 10.0 1.2e-07 31.6 6.9 2.8 1 1 1 2 2 2 1 CAAX protease self-immunity DUF3537 PF12056.3 gi|330508672|ref|YP_004385100.1| - 0.05 12.3 0.2 0.091 11.4 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3537) Polyketide_cyc2 PF10604.4 gi|330508673|ref|YP_004385101.1| - 4.8e-13 49.4 0.0 5.6e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|330508673|ref|YP_004385101.1| - 4.5e-06 26.7 0.0 5.5e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.15 gi|330508673|ref|YP_004385101.1| - 1.1e-05 25.4 0.0 1.5e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport LysM PF01476.15 gi|330508673|ref|YP_004385101.1| - 0.051 13.4 0.0 1.3 8.9 0.0 2.4 2 0 0 2 2 2 0 LysM domain CMD PF02627.15 gi|330508674|ref|YP_004385102.1| - 7.9e-11 41.6 0.0 9.2e-11 41.4 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Voltage_CLC PF00654.15 gi|330508675|ref|YP_004385103.1| - 8.2e-81 271.7 34.6 8.6e-81 271.7 19.6 2.0 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.23 gi|330508675|ref|YP_004385103.1| - 2.2e-24 84.9 1.2 5.9e-12 45.1 0.1 2.4 2 0 0 2 2 2 2 CBS domain Exo_endo_phos PF03372.18 gi|330508676|ref|YP_004385104.1| - 1.4e-14 54.6 0.1 1.9e-14 54.2 0.1 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family NTP_transf_2 PF01909.18 gi|330508677|ref|YP_004385105.1| - 2.5e-05 24.4 0.1 5.1e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|330508677|ref|YP_004385105.1| - 0.017 14.7 0.1 0.043 13.4 0.0 1.7 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 Kinetocho_Slk19 PF12709.2 gi|330508677|ref|YP_004385105.1| - 0.11 12.5 0.0 12 6.1 0.0 2.5 2 0 0 2 2 2 0 Central kinetochore-associated I-set PF07679.11 gi|330508678|ref|YP_004385106.1| - 1.4e-160 521.6 26.7 5.7e-07 29.3 0.0 25.1 22 0 0 22 22 22 22 Immunoglobulin I-set domain Ig_2 PF13895.1 gi|330508678|ref|YP_004385106.1| - 3.1e-92 302.7 37.1 3.4e-05 23.8 0.0 22.1 22 0 0 22 22 22 20 Immunoglobulin domain Ig_3 PF13927.1 gi|330508678|ref|YP_004385106.1| - 5e-89 292.7 16.4 0.00021 21.7 0.1 21.8 22 0 0 22 22 22 20 Immunoglobulin domain PKD PF00801.15 gi|330508678|ref|YP_004385106.1| - 3.5e-31 106.7 53.8 0.092 12.5 0.0 19.7 21 0 0 21 21 21 13 PKD domain V-set PF07686.12 gi|330508678|ref|YP_004385106.1| - 5.1e-16 58.5 62.2 0.77 9.6 0.0 27.9 22 15 0 22 22 22 2 Immunoglobulin V-set domain ig PF00047.20 gi|330508678|ref|YP_004385106.1| - 4.1e-09 36.4 21.8 1 9.5 0.0 13.7 16 0 0 16 16 16 1 Immunoglobulin domain Receptor_2B4 PF11465.3 gi|330508678|ref|YP_004385106.1| - 3.8e-05 23.5 11.2 3.8 7.4 0.0 10.8 12 0 0 12 12 12 1 Natural killer cell receptor 2B4 COX2 PF00116.15 gi|330508678|ref|YP_004385106.1| - 0.00011 22.0 0.7 27 4.6 0.0 8.6 13 0 0 13 13 13 0 Cytochrome C oxidase subunit II, periplasmic domain Peptidase_C8 PF03569.8 gi|330508678|ref|YP_004385106.1| - 0.005 16.1 0.0 26 4.0 0.0 7.1 11 0 0 11 11 11 0 Peptidase family C8 MalF_P2 PF14785.1 gi|330508678|ref|YP_004385106.1| - 0.0057 16.5 0.0 65 3.3 0.0 5.3 4 2 0 6 6 6 0 Maltose transport system permease protein MalF P2 domain Herpes_gI PF01688.12 gi|330508678|ref|YP_004385106.1| - 0.0078 15.3 0.0 29 3.7 0.0 5.6 6 0 0 6 6 6 0 Alphaherpesvirus glycoprotein I PK_C PF02887.11 gi|330508679|ref|YP_004385107.1| - 3.3e-11 42.7 0.0 4.6e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Glyco_transf_28 PF03033.15 gi|330508679|ref|YP_004385107.1| - 0.14 11.9 0.1 0.52 10.0 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Nitroreductase PF00881.19 gi|330508680|ref|YP_004385108.1| - 5.9e-26 91.2 0.0 8e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family DUF937 PF06078.6 gi|330508681|ref|YP_004385109.1| - 1.2e-17 64.4 7.1 2.1e-17 63.6 4.9 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF937) Polyketide_cyc2 PF10604.4 gi|330508683|ref|YP_004385111.1| - 2.9e-16 59.8 1.4 3.2e-16 59.7 0.9 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|330508683|ref|YP_004385111.1| - 1.5e-06 28.2 0.4 1.8e-06 28.0 0.3 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.15 gi|330508683|ref|YP_004385111.1| - 0.0022 17.9 0.2 0.0027 17.6 0.1 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Abhydrolase_5 PF12695.2 gi|330508684|ref|YP_004385112.1| - 0.00012 21.8 0.0 0.00019 21.1 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|330508684|ref|YP_004385112.1| - 0.0025 17.7 0.0 0.0032 17.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|330508684|ref|YP_004385112.1| - 0.012 15.3 0.0 0.031 14.1 0.0 1.6 1 1 0 1 1 1 0 Putative lysophospholipase MULE PF10551.4 gi|330508685|ref|YP_004385113.1| - 3.2e-08 33.6 0.0 8.8e-08 32.2 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|330508685|ref|YP_004385113.1| - 6.6e-07 28.8 1.0 8.8e-06 25.1 0.7 2.0 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|330508685|ref|YP_004385113.1| - 0.012 15.7 0.1 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain DZR PF12773.2 gi|330508685|ref|YP_004385113.1| - 0.026 14.3 2.1 0.059 13.1 1.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|330508685|ref|YP_004385113.1| - 0.048 13.9 2.9 0.11 12.7 0.7 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Terminase_GpA PF05876.7 gi|330508685|ref|YP_004385113.1| - 0.35 9.1 1.6 4.5 5.4 0.2 2.1 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) zf-ISL3 PF14690.1 gi|330508685|ref|YP_004385113.1| - 1.5 8.9 3.8 1.4 9.0 0.7 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|330508685|ref|YP_004385113.1| - 1.5 8.1 5.8 12 5.2 1.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Abhydrolase_5 PF12695.2 gi|330508686|ref|YP_004385114.1| - 2.3e-07 30.6 0.0 2.6e-07 30.4 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|330508686|ref|YP_004385114.1| - 0.00058 18.4 0.0 0.00073 18.1 0.0 1.1 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Fer4 PF00037.22 gi|330508687|ref|YP_004385115.1| - 7.2e-09 34.8 11.7 3.5e-06 26.3 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330508687|ref|YP_004385115.1| - 5.2e-07 30.3 9.4 1.6e-06 28.7 6.5 1.8 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|330508687|ref|YP_004385115.1| - 1.1e-06 28.2 9.3 0.00077 19.2 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330508687|ref|YP_004385115.1| - 3e-06 27.3 21.5 0.0001 22.4 7.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330508687|ref|YP_004385115.1| - 1.5e-05 25.3 4.8 0.03 14.7 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508687|ref|YP_004385115.1| - 3.1e-05 23.6 10.6 0.00013 21.6 8.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330508687|ref|YP_004385115.1| - 6e-05 23.3 21.6 0.00026 21.3 7.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330508687|ref|YP_004385115.1| - 0.00023 21.4 14.2 0.044 14.3 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330508687|ref|YP_004385115.1| - 0.00049 20.3 6.5 0.011 16.0 5.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330508687|ref|YP_004385115.1| - 0.00088 19.4 8.6 0.041 14.2 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330508687|ref|YP_004385115.1| - 0.0015 18.3 11.8 0.052 13.4 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330508687|ref|YP_004385115.1| - 0.0015 18.5 9.4 0.037 14.0 7.4 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Dehalogenase PF13486.1 gi|330508687|ref|YP_004385115.1| - 0.048 13.1 0.0 0.069 12.5 0.0 1.1 1 0 0 1 1 1 0 Reductive dehalogenase subunit Fer4_21 PF14697.1 gi|330508687|ref|YP_004385115.1| - 0.054 13.3 12.2 0.2 11.5 8.5 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|330508687|ref|YP_004385115.1| - 0.093 13.1 2.5 2.1 8.8 0.8 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|330508687|ref|YP_004385115.1| - 1.6 9.3 5.8 5.9 7.5 4.0 1.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain AcetylCoA_hyd_C PF13336.1 gi|330508688|ref|YP_004385116.1| - 6e-62 207.8 0.0 9.3e-62 207.2 0.0 1.3 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|330508688|ref|YP_004385116.1| - 1.2e-46 158.9 0.0 2.4e-46 158.0 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.19 gi|330508688|ref|YP_004385116.1| - 7.5e-12 45.1 0.3 1.9e-11 43.8 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|330508688|ref|YP_004385116.1| - 2.5e-08 34.1 0.0 4.3e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|330508688|ref|YP_004385116.1| - 1e-07 32.0 0.0 1.9e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|330508688|ref|YP_004385116.1| - 0.00036 20.6 0.1 0.0011 19.0 0.1 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|330508688|ref|YP_004385116.1| - 0.00044 20.1 0.0 0.00098 19.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CoA_trans PF01144.18 gi|330508688|ref|YP_004385116.1| - 0.00086 18.5 0.1 1.2 8.2 0.0 2.9 3 0 0 3 3 3 2 Coenzyme A transferase Acetyltransf_10 PF13673.1 gi|330508688|ref|YP_004385116.1| - 0.0062 16.6 0.0 0.017 15.2 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DeoRC PF00455.17 gi|330508688|ref|YP_004385116.1| - 0.009 15.6 0.0 0.032 13.8 0.0 1.9 2 0 0 2 2 2 1 DeoR C terminal sensor domain FR47 PF08445.5 gi|330508688|ref|YP_004385116.1| - 0.024 14.3 0.0 0.053 13.2 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.1 gi|330508688|ref|YP_004385116.1| - 0.047 13.5 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase NT5C PF06941.7 gi|330508689|ref|YP_004385117.1| - 1.9e-15 56.9 0.1 2.1e-15 56.7 0.1 1.1 1 0 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Apo-CIII PF05778.7 gi|330508689|ref|YP_004385117.1| - 0.14 11.5 0.0 0.28 10.5 0.0 1.4 1 0 0 1 1 1 0 Apolipoprotein CIII (Apo-CIII) OrfB_IS605 PF01385.14 gi|330508690|ref|YP_004385118.1| - 1.4e-09 37.7 0.0 1.7e-09 37.4 0.0 1.0 1 0 0 1 1 1 1 Probable transposase DDE_Tnp_1 PF01609.16 gi|330508691|ref|YP_004385119.1| - 9.5e-23 80.8 0.0 1.4e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|330508691|ref|YP_004385119.1| - 0.0076 16.4 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|330508691|ref|YP_004385119.1| - 0.011 14.7 0.3 0.017 14.1 0.2 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Peptidase_M24 PF00557.19 gi|330508692|ref|YP_004385120.1| - 1.2e-29 103.4 0.0 1.5e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|330508692|ref|YP_004385120.1| - 7.1e-13 49.1 0.0 1.4e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF457 PF04307.9 gi|330508693|ref|YP_004385121.1| - 1.9e-25 89.0 10.9 2.9e-25 88.4 7.6 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|330508693|ref|YP_004385121.1| - 5.2e-05 22.9 0.2 8.2e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF4184 PF13803.1 gi|330508693|ref|YP_004385121.1| - 0.23 10.7 8.3 1.4 8.1 5.8 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) DUF99 PF01949.11 gi|330508696|ref|YP_004385124.1| - 4.4e-52 175.9 0.0 1.4e-51 174.3 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF99 Acylphosphatase PF00708.13 gi|330508697|ref|YP_004385125.1| - 2.5e-20 72.3 0.4 5.4e-20 71.3 0.1 1.7 2 0 0 2 2 2 1 Acylphosphatase HSBP1 PF06825.7 gi|330508697|ref|YP_004385125.1| - 0.003 17.1 0.0 0.35 10.4 0.0 2.7 1 1 1 2 2 2 1 Heat shock factor binding protein 1 DUF1664 PF07889.7 gi|330508697|ref|YP_004385125.1| - 0.0048 16.6 1.3 0.025 14.3 0.6 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) COG2 PF06148.6 gi|330508697|ref|YP_004385125.1| - 0.0055 16.5 0.6 0.017 14.9 0.3 1.9 1 1 1 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 Baculo_PEP_C PF04513.7 gi|330508697|ref|YP_004385125.1| - 0.0067 16.2 0.0 1 9.2 0.0 2.3 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Spectrin PF00435.16 gi|330508697|ref|YP_004385125.1| - 0.012 15.9 0.1 0.061 13.6 0.0 2.1 1 1 1 2 2 2 0 Spectrin repeat Apolipoprotein PF01442.13 gi|330508697|ref|YP_004385125.1| - 0.028 13.9 0.3 0.068 12.6 0.2 1.6 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain SNARE PF05739.14 gi|330508697|ref|YP_004385125.1| - 0.12 12.0 3.8 3.8 7.2 0.1 3.5 2 1 1 3 3 3 0 SNARE domain LTD PF00932.14 gi|330508698|ref|YP_004385126.1| - 7.8e-09 35.6 1.9 1.1e-08 35.1 0.7 1.8 2 0 0 2 2 2 1 Lamin Tail Domain DUF3880 PF12996.2 gi|330508698|ref|YP_004385126.1| - 0.078 12.8 0.1 0.2 11.5 0.1 1.7 1 0 0 1 1 1 0 DUF based on E. rectale Gene description (DUF3880) Neur PF00064.13 gi|330508699|ref|YP_004385127.1| - 0.018 13.1 3.5 0.018 13.1 2.4 1.0 1 0 0 1 1 1 0 Neuraminidase GATase_3 PF07685.9 gi|330508700|ref|YP_004385128.1| - 1.3e-33 115.8 0.0 2.6e-33 114.8 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|330508700|ref|YP_004385128.1| - 4.7e-22 78.3 0.0 9.9e-22 77.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|330508700|ref|YP_004385128.1| - 7e-17 61.6 0.1 3.6e-10 39.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain Peptidase_S51 PF03575.12 gi|330508700|ref|YP_004385128.1| - 0.0016 18.2 0.0 0.0027 17.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 SNO PF01174.14 gi|330508700|ref|YP_004385128.1| - 0.038 13.6 0.0 0.065 12.8 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family dTMP_synthase PF02593.9 gi|330508701|ref|YP_004385129.1| - 2.6e-66 223.1 0.0 2.9e-66 222.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase CoA_binding_2 PF13380.1 gi|330508701|ref|YP_004385129.1| - 0.00051 20.1 0.0 0.00083 19.5 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain DapB_N PF01113.15 gi|330508701|ref|YP_004385129.1| - 0.0022 17.9 0.0 0.0058 16.5 0.0 1.7 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus MafB19-deam PF14437.1 gi|330508701|ref|YP_004385129.1| - 0.12 12.0 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 MafB19-like deaminase Fumerase PF05681.9 gi|330508702|ref|YP_004385130.1| - 1.7e-82 276.5 0.0 2e-82 276.3 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.7 gi|330508703|ref|YP_004385131.1| - 8.2e-38 129.5 0.0 1e-37 129.2 0.0 1.1 1 0 0 1 1 1 1 Fumarase C-terminus DUF434 PF04256.7 gi|330508704|ref|YP_004385132.1| - 6.8e-10 38.1 0.1 1.2e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) GPI PF06560.6 gi|330508706|ref|YP_004385134.1| - 2.7e-55 186.2 0.0 3.3e-55 185.9 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|330508706|ref|YP_004385134.1| - 0.0017 17.7 0.0 0.0045 16.4 0.0 1.7 1 1 0 1 1 1 1 Cupin domain UbiA PF01040.13 gi|330508707|ref|YP_004385135.1| - 5.7e-36 124.0 19.8 7.4e-36 123.6 13.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family YL1_C PF08265.6 gi|330508708|ref|YP_004385136.1| - 0.00047 19.6 2.4 0.45 10.1 0.2 3.8 3 1 1 4 4 4 2 YL1 nuclear protein C-terminal domain PepSY PF03413.14 gi|330508708|ref|YP_004385136.1| - 0.027 15.1 2.8 1.4 9.6 2.0 2.6 1 1 0 1 1 1 0 Peptidase propeptide and YPEB domain PepSY_2 PF13670.1 gi|330508708|ref|YP_004385136.1| - 0.37 10.7 2.1 51 3.8 0.0 3.2 2 1 2 4 4 4 0 Peptidase propeptide and YPEB domain DUF4585 PF15232.1 gi|330508708|ref|YP_004385136.1| - 0.59 10.0 2.7 3.6 7.5 1.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4585) WW PF00397.21 gi|330508708|ref|YP_004385136.1| - 1.2 9.0 5.7 7.3 6.5 0.3 3.1 1 1 2 3 3 3 0 WW domain MtN3_slv PF03083.11 gi|330508711|ref|YP_004385139.1| - 8.5e-12 44.7 2.6 9.5e-12 44.6 1.8 1.0 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PQ-loop PF04193.9 gi|330508711|ref|YP_004385139.1| - 1e-07 31.3 1.1 1e-07 31.3 0.7 1.7 1 1 1 2 2 2 1 PQ loop repeat Gemini_mov PF01708.11 gi|330508711|ref|YP_004385139.1| - 2.7 7.5 4.8 1.2 8.7 1.7 1.5 1 1 1 2 2 2 0 Geminivirus putative movement protein HTH_5 PF01022.15 gi|330508713|ref|YP_004385141.1| - 6.9e-17 60.8 1.8 6.6e-15 54.5 0.0 2.8 2 1 1 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|330508713|ref|YP_004385141.1| - 1e-11 44.4 0.1 4.9e-11 42.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|330508713|ref|YP_004385141.1| - 0.042 13.5 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|330508713|ref|YP_004385141.1| - 0.075 13.0 0.2 1.3 9.1 0.0 2.6 2 1 1 3 3 3 0 Winged helix DNA-binding domain MarR PF01047.17 gi|330508713|ref|YP_004385141.1| - 0.086 12.5 0.0 0.78 9.4 0.0 2.1 2 0 0 2 2 2 0 MarR family TBPIP PF07106.8 gi|330508713|ref|YP_004385141.1| - 0.14 11.6 0.1 0.28 10.7 0.0 1.5 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_27 PF13463.1 gi|330508713|ref|YP_004385141.1| - 0.14 12.4 0.1 0.87 9.9 0.0 2.2 2 1 1 3 3 3 0 Winged helix DNA-binding domain DUF318 PF03773.8 gi|330508714|ref|YP_004385142.1| - 9.1e-78 261.3 23.0 1.1e-77 261.0 16.0 1.1 1 0 0 1 1 1 1 Predicted permease Pribosyltran PF00156.22 gi|330508715|ref|YP_004385143.1| - 2.8e-20 72.2 1.4 3.8e-20 71.8 1.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|330508715|ref|YP_004385143.1| - 0.018 14.2 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|330508715|ref|YP_004385143.1| - 0.052 12.8 0.0 0.068 12.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Methyltransf_18 PF12847.2 gi|330508716|ref|YP_004385144.1| - 3.8e-17 62.8 0.1 6.6e-17 62.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330508716|ref|YP_004385144.1| - 5.6e-15 55.2 0.0 7.7e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330508716|ref|YP_004385144.1| - 7.9e-14 51.9 0.0 1.4e-13 51.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330508716|ref|YP_004385144.1| - 2.5e-11 43.8 0.0 3.9e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330508716|ref|YP_004385144.1| - 8.7e-11 41.7 0.0 2.1e-10 40.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330508716|ref|YP_004385144.1| - 1.4e-09 38.2 0.0 3e-09 37.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330508716|ref|YP_004385144.1| - 8.2e-09 35.0 0.0 1.5e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|330508716|ref|YP_004385144.1| - 9.2e-08 32.1 0.1 1.3e-07 31.6 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|330508716|ref|YP_004385144.1| - 3.7e-07 29.5 0.0 5.2e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|330508716|ref|YP_004385144.1| - 8.4e-07 28.2 0.0 1.2e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|330508716|ref|YP_004385144.1| - 8.5e-07 28.3 0.0 1.3e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|330508716|ref|YP_004385144.1| - 4e-06 26.3 0.0 5.3e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|330508716|ref|YP_004385144.1| - 6.1e-06 25.5 0.0 8.6e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|330508716|ref|YP_004385144.1| - 0.00031 20.3 0.0 0.00049 19.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.12 gi|330508716|ref|YP_004385144.1| - 0.00042 19.4 0.0 0.00062 18.8 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase N2227 PF07942.7 gi|330508716|ref|YP_004385144.1| - 0.00098 18.1 0.0 0.0014 17.6 0.0 1.1 1 0 0 1 1 1 1 N2227-like protein TPMT PF05724.6 gi|330508716|ref|YP_004385144.1| - 0.0012 18.2 0.0 0.0017 17.8 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.5 gi|330508716|ref|YP_004385144.1| - 0.005 16.4 0.0 0.0064 16.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|330508716|ref|YP_004385144.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|330508716|ref|YP_004385144.1| - 0.046 13.0 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|330508716|ref|YP_004385144.1| - 0.14 11.2 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) HTH_5 PF01022.15 gi|330508717|ref|YP_004385145.1| - 1.3e-15 56.8 1.9 1.1e-13 50.6 0.0 2.8 2 1 1 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|330508717|ref|YP_004385145.1| - 1.4e-10 40.7 0.3 4.3e-10 39.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|330508717|ref|YP_004385145.1| - 0.034 13.8 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF318 PF03773.8 gi|330508718|ref|YP_004385146.1| - 5.2e-78 262.1 27.0 6.8e-78 261.7 18.7 1.1 1 0 0 1 1 1 1 Predicted permease TGFb_propeptide PF00688.13 gi|330508719|ref|YP_004385147.1| - 0.058 12.6 0.0 0.076 12.2 0.0 1.2 1 0 0 1 1 1 0 TGF-beta propeptide DsbD PF02683.10 gi|330508720|ref|YP_004385148.1| - 5.8e-21 75.0 15.1 9e-21 74.4 10.5 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|330508720|ref|YP_004385148.1| - 2.9e-09 36.9 18.8 2.9e-09 36.9 13.0 1.9 2 1 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|330508720|ref|YP_004385148.1| - 3.7e-05 23.4 0.1 8.4e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|330508720|ref|YP_004385148.1| - 0.0087 16.0 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin Peptidase_M50 PF02163.17 gi|330508720|ref|YP_004385148.1| - 0.031 13.2 1.8 0.13 11.1 1.3 2.2 1 1 0 1 1 1 0 Peptidase family M50 Thioredoxin_3 PF13192.1 gi|330508721|ref|YP_004385149.1| - 1.6e-25 88.6 1.0 1.8e-25 88.5 0.7 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|330508721|ref|YP_004385149.1| - 0.00028 20.8 0.2 0.00051 19.9 0.1 1.5 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.15 gi|330508721|ref|YP_004385149.1| - 0.01 15.5 0.0 0.01 15.5 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_4 PF13462.1 gi|330508721|ref|YP_004385149.1| - 0.013 15.5 0.1 0.085 12.8 0.0 1.8 1 1 1 2 2 2 0 Thioredoxin GATase PF00117.23 gi|330508721|ref|YP_004385149.1| - 0.048 13.0 0.0 0.05 13.0 0.0 1.1 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Jag_N PF14804.1 gi|330508721|ref|YP_004385149.1| - 0.24 11.4 1.2 0.36 10.8 0.3 1.7 1 1 1 2 2 2 0 Jag N-terminus Rhodanese PF00581.15 gi|330508722|ref|YP_004385150.1| - 1.9e-21 76.5 0.0 9e-10 38.9 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain NTS PF15447.1 gi|330508722|ref|YP_004385150.1| - 0.12 12.7 0.0 1.3 9.4 0.0 2.4 2 0 0 2 2 2 0 N-terminal segments of PfEMP1 Rhodanese PF00581.15 gi|330508723|ref|YP_004385151.1| - 1.2e-22 80.3 0.0 6e-11 42.6 0.0 2.5 2 0 0 2 2 2 2 Rhodanese-like domain Imm49 PF15660.1 gi|330508723|ref|YP_004385151.1| - 0.0022 18.0 0.2 0.0062 16.5 0.0 1.8 2 0 0 2 2 2 1 Immunity protein 49 TauE PF01925.14 gi|330508724|ref|YP_004385152.1| - 4.1e-40 137.7 41.4 4.1e-40 137.7 28.7 1.4 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE Phasin_2 PF09361.5 gi|330508725|ref|YP_004385153.1| - 0.031 14.3 0.4 0.051 13.6 0.3 1.4 1 0 0 1 1 1 0 Phasin protein UNC45-central PF11701.3 gi|330508725|ref|YP_004385153.1| - 0.25 10.9 2.6 0.47 10.0 1.7 1.5 1 1 0 1 1 1 0 Myosin-binding striated muscle assembly central DUF3007 PF11460.3 gi|330508725|ref|YP_004385153.1| - 0.32 11.0 3.3 1.7 8.7 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3007) SGS PF05002.10 gi|330508725|ref|YP_004385153.1| - 3.8 7.3 14.1 0.24 11.1 1.6 2.4 1 1 1 2 2 2 0 SGS domain SSPI PF14098.1 gi|330508725|ref|YP_004385153.1| - 3.9 7.4 5.7 8.2 6.4 0.2 3.2 2 1 3 5 5 5 0 Small, acid-soluble spore protein I DEDD_Tnp_IS110 PF01548.12 gi|330508726|ref|YP_004385154.1| - 4.7e-29 100.9 0.0 1.4e-28 99.3 0.0 1.9 1 0 0 1 1 1 1 Transposase Transposase_20 PF02371.11 gi|330508726|ref|YP_004385154.1| - 6.9e-25 86.9 0.1 1.3e-24 86.1 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family adh_short PF00106.20 gi|330508727|ref|YP_004385155.1| - 1.4e-33 116.1 0.0 1.9e-33 115.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|330508727|ref|YP_004385155.1| - 3.1e-28 99.1 0.0 3.8e-28 98.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|330508727|ref|YP_004385155.1| - 1.2e-15 57.7 0.0 1.6e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|330508727|ref|YP_004385155.1| - 0.0009 18.7 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Saccharop_dh PF03435.13 gi|330508727|ref|YP_004385155.1| - 0.03 13.2 0.0 0.038 12.9 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Fer4 PF00037.22 gi|330508729|ref|YP_004385157.1| - 6.9e-05 22.2 12.8 0.0005 19.5 2.7 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330508729|ref|YP_004385157.1| - 9.8e-05 22.6 13.4 0.018 15.4 0.2 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330508729|ref|YP_004385157.1| - 0.00016 21.4 14.2 0.0013 18.5 2.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330508729|ref|YP_004385157.1| - 0.0017 18.1 3.1 0.0017 18.1 2.2 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330508729|ref|YP_004385157.1| - 0.0029 17.4 10.5 0.0029 17.4 7.3 2.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508729|ref|YP_004385157.1| - 0.0071 16.1 14.5 0.0071 16.1 10.1 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330508729|ref|YP_004385157.1| - 0.0077 16.2 15.0 7.8 6.6 10.4 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|330508729|ref|YP_004385157.1| - 0.03 14.7 1.1 0.03 14.7 0.8 2.8 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|330508729|ref|YP_004385157.1| - 0.15 12.8 19.1 0.25 12.1 7.4 2.2 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|330508729|ref|YP_004385157.1| - 3.2 8.1 21.4 0.98 9.8 3.1 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330508729|ref|YP_004385157.1| - 3.4 8.3 10.0 2.6 8.6 1.8 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|330508729|ref|YP_004385157.1| - 7.4 6.9 23.3 0.058 13.6 9.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF169 PF02596.10 gi|330508730|ref|YP_004385158.1| - 9.7e-53 178.7 0.0 1.1e-52 178.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 RhoGEF PF00621.15 gi|330508731|ref|YP_004385159.1| - 0.082 12.7 0.2 0.1 12.4 0.1 1.1 1 0 0 1 1 1 0 RhoGEF domain DUF1955 PF09205.5 gi|330508731|ref|YP_004385159.1| - 0.089 12.3 1.6 0.11 12.0 1.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1955) TRCF PF03461.10 gi|330508731|ref|YP_004385159.1| - 0.098 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 TRCF domain Fer4_13 PF13370.1 gi|330508733|ref|YP_004385161.1| - 5.6e-18 65.0 2.2 6.8e-18 64.8 1.5 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|330508733|ref|YP_004385161.1| - 3.2e-17 62.8 3.7 3.7e-17 62.6 2.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|330508733|ref|YP_004385161.1| - 4.3e-05 22.9 9.4 0.0003 20.2 3.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330508733|ref|YP_004385161.1| - 4.4e-05 23.1 3.2 0.00011 21.8 2.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330508733|ref|YP_004385161.1| - 0.00021 21.0 3.9 0.00021 21.0 2.7 2.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330508733|ref|YP_004385161.1| - 0.0013 18.5 1.5 0.0018 18.0 0.1 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330508733|ref|YP_004385161.1| - 0.0017 18.6 0.4 0.0029 17.9 0.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330508733|ref|YP_004385161.1| - 0.004 17.1 2.7 0.008 16.1 1.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330508733|ref|YP_004385161.1| - 0.0066 16.6 3.6 0.022 15.0 2.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330508733|ref|YP_004385161.1| - 0.0086 15.9 2.4 0.0086 15.9 1.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330508733|ref|YP_004385161.1| - 0.0091 16.3 5.4 0.012 16.0 0.8 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain MDH PF02315.11 gi|330508733|ref|YP_004385161.1| - 0.11 12.4 0.4 0.16 11.9 0.3 1.2 1 0 0 1 1 1 0 Methanol dehydrogenase beta subunit Fer4_16 PF13484.1 gi|330508733|ref|YP_004385161.1| - 1.4 9.7 6.8 5.7 7.7 4.5 2.0 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|330508733|ref|YP_004385161.1| - 2.2 8.8 8.0 0.24 11.8 0.8 2.3 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|330508733|ref|YP_004385161.1| - 4.3 7.8 6.3 1.4 9.4 1.7 1.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain DUF1193 PF06702.7 gi|330508734|ref|YP_004385162.1| - 0.014 14.8 0.0 0.024 14.0 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1193) ABC2_membrane PF01061.19 gi|330508735|ref|YP_004385163.1| - 2.9e-21 75.6 16.1 2.9e-21 75.6 11.1 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330508735|ref|YP_004385163.1| - 1.1e-16 60.8 23.0 1.2e-16 60.7 16.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|330508735|ref|YP_004385163.1| - 3.6e-07 29.3 21.2 1e-06 27.8 14.7 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein AtpR PF12966.2 gi|330508735|ref|YP_004385163.1| - 0.0024 17.9 2.8 0.0024 17.9 1.9 2.6 2 1 1 3 3 3 1 N-ATPase, AtpR subunit ABC2_membrane_4 PF12730.2 gi|330508735|ref|YP_004385163.1| - 0.013 14.7 19.0 0.02 14.0 13.1 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein Pentapeptide_3 PF13576.1 gi|330508736|ref|YP_004385164.1| - 5.1e-41 138.3 76.6 1e-09 38.0 5.7 7.3 1 1 6 8 8 8 8 Pentapeptide repeats (9 copies) Methyltransf_31 PF13847.1 gi|330508737|ref|YP_004385165.1| - 3e-38 130.7 0.0 4.6e-38 130.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330508737|ref|YP_004385165.1| - 3.1e-24 85.2 0.0 7.1e-24 84.1 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330508737|ref|YP_004385165.1| - 3.6e-22 78.6 0.0 5.5e-22 78.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|330508737|ref|YP_004385165.1| - 6.4e-18 65.3 0.0 1.1e-17 64.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330508737|ref|YP_004385165.1| - 8.2e-15 54.8 0.0 1.2e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330508737|ref|YP_004385165.1| - 1.5e-14 54.1 0.0 2.9e-14 53.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330508737|ref|YP_004385165.1| - 3.1e-14 53.2 0.0 5.3e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|330508737|ref|YP_004385165.1| - 6.6e-10 38.8 0.0 1.3e-09 37.9 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|330508737|ref|YP_004385165.1| - 8.2e-10 38.7 0.0 1.4e-09 37.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330508737|ref|YP_004385165.1| - 4e-09 36.0 0.0 5.6e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|330508737|ref|YP_004385165.1| - 2.4e-08 33.5 0.1 6.2e-08 32.1 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|330508737|ref|YP_004385165.1| - 1.3e-06 28.2 0.0 3.1e-06 26.9 0.0 1.5 2 0 0 2 2 2 1 Hypothetical methyltransferase CMAS PF02353.15 gi|330508737|ref|YP_004385165.1| - 0.00021 20.4 0.0 0.0003 19.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|330508737|ref|YP_004385165.1| - 0.00062 19.3 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|330508737|ref|YP_004385165.1| - 0.0014 18.2 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|330508737|ref|YP_004385165.1| - 0.0089 16.0 0.0 0.016 15.1 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase GidB PF02527.10 gi|330508737|ref|YP_004385165.1| - 0.021 13.9 0.0 0.04 13.0 0.0 1.4 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G Met_10 PF02475.11 gi|330508737|ref|YP_004385165.1| - 0.063 12.8 0.0 0.096 12.2 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_4 PF02390.12 gi|330508737|ref|YP_004385165.1| - 0.071 12.1 0.1 0.15 11.1 0.0 1.5 2 0 0 2 2 2 0 Putative methyltransferase Fibrillarin PF01269.12 gi|330508737|ref|YP_004385165.1| - 0.11 11.3 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Methyltransf_15 PF09445.5 gi|330508737|ref|YP_004385165.1| - 0.12 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.15 gi|330508737|ref|YP_004385165.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|330508737|ref|YP_004385165.1| - 0.15 11.0 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Antitoxin-MazE PF04014.13 gi|330508738|ref|YP_004385166.1| - 1.7e-06 27.6 0.2 2.6e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE HTH_5 PF01022.15 gi|330508740|ref|YP_004385168.1| - 6.8e-21 73.6 0.5 6.8e-21 73.6 0.4 1.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|330508740|ref|YP_004385168.1| - 1.4e-16 60.0 0.1 2.2e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|330508740|ref|YP_004385168.1| - 3.4e-05 23.4 0.0 8.5e-05 22.1 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF742 PF05331.6 gi|330508740|ref|YP_004385168.1| - 0.002 17.6 0.0 0.0025 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) PaaX PF07848.7 gi|330508740|ref|YP_004385168.1| - 0.0033 17.4 0.0 0.023 14.6 0.0 2.1 2 0 0 2 2 2 1 PaaX-like protein HTH_IclR PF09339.5 gi|330508740|ref|YP_004385168.1| - 0.0073 15.8 0.5 0.013 15.0 0.1 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|330508740|ref|YP_004385168.1| - 0.026 14.4 0.1 0.082 12.8 0.1 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.11 gi|330508740|ref|YP_004385168.1| - 0.063 13.3 0.1 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor MarR_2 PF12802.2 gi|330508740|ref|YP_004385168.1| - 0.069 12.8 0.2 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.1 gi|330508740|ref|YP_004385168.1| - 0.11 12.1 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain DUF318 PF03773.8 gi|330508741|ref|YP_004385169.1| - 5e-63 212.9 27.2 8.1e-63 212.2 18.8 1.3 1 1 0 1 1 1 1 Predicted permease LMWPc PF01451.16 gi|330508742|ref|YP_004385170.1| - 7.5e-27 94.3 0.1 9.4e-27 94.0 0.1 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF3287 PF11690.3 gi|330508742|ref|YP_004385170.1| - 0.06 13.4 0.2 1.1 9.3 0.0 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3287) Fer4_13 PF13370.1 gi|330508743|ref|YP_004385171.1| - 1.1e-15 57.6 3.9 1.4e-15 57.3 2.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|330508743|ref|YP_004385171.1| - 1.2e-13 51.3 4.8 1.5e-13 51.1 3.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|330508743|ref|YP_004385171.1| - 6.1e-05 22.7 2.4 0.00013 21.7 1.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|330508743|ref|YP_004385171.1| - 0.0009 19.0 4.0 0.011 15.4 2.8 2.0 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|330508743|ref|YP_004385171.1| - 0.0012 18.3 3.2 0.0012 18.3 2.2 2.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330508743|ref|YP_004385171.1| - 0.0098 15.9 2.3 0.017 15.1 1.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330508743|ref|YP_004385171.1| - 0.012 15.4 4.9 0.027 14.3 3.4 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330508743|ref|YP_004385171.1| - 0.017 15.4 3.7 0.066 13.4 2.5 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330508743|ref|YP_004385171.1| - 0.019 14.8 3.2 0.019 14.8 2.2 2.2 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330508743|ref|YP_004385171.1| - 0.032 14.5 3.7 0.081 13.2 2.5 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330508743|ref|YP_004385171.1| - 0.061 13.7 5.3 0.16 12.3 1.3 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330508743|ref|YP_004385171.1| - 0.67 9.9 7.0 0.31 10.9 1.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330508743|ref|YP_004385171.1| - 0.75 10.5 6.2 2.6 8.8 2.4 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|330508743|ref|YP_004385171.1| - 2.5 8.6 6.7 0.21 11.9 0.8 2.0 2 1 0 2 2 2 0 4Fe-4S binding domain T2SE_Nter PF05157.10 gi|330508744|ref|YP_004385172.1| - 0.11 12.5 0.1 0.2 11.7 0.0 1.5 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein E, N-terminal domain AAA_22 PF13401.1 gi|330508745|ref|YP_004385173.1| - 0.014 15.5 0.1 0.17 12.0 0.0 2.9 3 1 0 3 3 3 0 AAA domain IF3_N PF05198.11 gi|330508745|ref|YP_004385173.1| - 0.051 13.5 1.9 0.073 13.0 0.0 2.2 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain DsbD PF02683.10 gi|330508746|ref|YP_004385174.1| - 1.1e-21 77.4 14.0 1.6e-21 76.8 9.7 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|330508746|ref|YP_004385174.1| - 1.2e-11 44.7 21.1 7.7e-08 32.3 2.6 2.6 2 1 0 2 2 2 2 Cytochrome C biogenesis protein transmembrane region AhpC-TSA PF00578.16 gi|330508746|ref|YP_004385174.1| - 1.1e-06 28.3 0.0 3.2e-06 26.8 0.0 1.7 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|330508746|ref|YP_004385174.1| - 4.4e-06 26.3 0.0 7.5e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|330508747|ref|YP_004385175.1| - 0.04 13.6 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA family DUF3400 PF11880.3 gi|330508747|ref|YP_004385175.1| - 0.081 12.1 0.2 0.32 10.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3400) HTH_5 PF01022.15 gi|330508748|ref|YP_004385176.1| - 4.5e-17 61.4 0.6 8.7e-17 60.5 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|330508748|ref|YP_004385176.1| - 8.1e-15 54.3 0.0 1.2e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|330508748|ref|YP_004385176.1| - 0.00067 19.3 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PaaX PF07848.7 gi|330508748|ref|YP_004385176.1| - 0.01 15.8 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein HTH_45 PF14947.1 gi|330508748|ref|YP_004385176.1| - 0.088 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Rhodanese PF00581.15 gi|330508749|ref|YP_004385177.1| - 3.1e-25 88.7 0.1 1.1e-15 57.9 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain SBF PF01758.11 gi|330508750|ref|YP_004385178.1| - 2.9e-59 199.6 14.6 2.9e-59 199.6 10.1 2.2 3 0 0 3 3 3 1 Sodium Bile acid symporter family KASH PF10541.4 gi|330508750|ref|YP_004385178.1| - 0.23 11.3 0.2 0.23 11.3 0.1 2.6 3 0 0 3 3 3 0 Nuclear envelope localisation domain FeS PF04060.8 gi|330508751|ref|YP_004385179.1| - 7.4e-13 47.8 0.5 1.4e-12 46.9 0.3 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.2 gi|330508751|ref|YP_004385179.1| - 1.5e-07 31.1 0.1 5.5e-07 29.3 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|330508751|ref|YP_004385179.1| - 0.00078 19.0 0.2 0.0035 16.9 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family ArsR PF09824.4 gi|330508751|ref|YP_004385179.1| - 0.0011 18.3 0.1 0.0063 15.8 0.0 1.9 2 0 0 2 2 2 1 ArsR transcriptional regulator TBP PF00352.16 gi|330508751|ref|YP_004385179.1| - 0.0011 18.2 0.0 0.002 17.4 0.0 1.5 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) Maf1 PF09174.5 gi|330508751|ref|YP_004385179.1| - 0.072 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Maf1 regulator DrsE PF02635.10 gi|330508752|ref|YP_004385180.1| - 6.4e-19 68.2 0.0 7.1e-19 68.0 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.10 gi|330508753|ref|YP_004385181.1| - 9.2e-10 38.6 0.0 1e-09 38.5 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.7 gi|330508753|ref|YP_004385181.1| - 0.00083 18.9 0.1 0.0021 17.6 0.1 1.6 1 1 0 1 1 1 1 DsrH like protein TOMM6 PF15184.1 gi|330508753|ref|YP_004385181.1| - 0.037 13.3 0.2 0.11 11.7 0.1 1.9 2 1 0 2 2 2 0 Mitochondrial import receptor subunit TOM6 homolog DsrH PF04077.7 gi|330508754|ref|YP_004385182.1| - 4.1e-09 35.9 0.0 4.8e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 DsrH like protein DrsE PF02635.10 gi|330508754|ref|YP_004385182.1| - 0.017 15.1 0.0 0.033 14.2 0.0 1.6 1 1 0 1 1 1 0 DsrE/DsrF-like family Acetyltransf_1 PF00583.19 gi|330508756|ref|YP_004385184.1| - 2.4e-07 30.7 0.0 3.7e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|330508756|ref|YP_004385184.1| - 3.6e-06 27.0 0.0 7.1e-06 26.1 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|330508756|ref|YP_004385184.1| - 6.1e-05 23.2 0.0 8.6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|330508756|ref|YP_004385184.1| - 0.0018 18.2 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|330508756|ref|YP_004385184.1| - 0.0097 16.0 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|330508756|ref|YP_004385184.1| - 0.016 14.9 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_9 PF13527.1 gi|330508756|ref|YP_004385184.1| - 0.12 12.1 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3944 PF13099.1 gi|330508756|ref|YP_004385184.1| - 0.14 11.7 1.4 0.58 9.6 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3944) CCG PF02754.11 gi|330508757|ref|YP_004385185.1| - 4.6e-32 109.8 5.7 5.6e-17 61.5 0.1 2.8 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|330508757|ref|YP_004385185.1| - 1.9e-12 46.9 5.2 1.9e-12 46.9 3.6 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330508757|ref|YP_004385185.1| - 4e-11 43.0 3.8 4e-11 43.0 2.6 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330508757|ref|YP_004385185.1| - 4.1e-06 27.1 13.2 0.001 19.4 0.1 3.3 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508757|ref|YP_004385185.1| - 5.1e-06 26.1 21.6 2.2e-05 24.1 8.1 2.9 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330508757|ref|YP_004385185.1| - 8.1e-06 26.1 9.3 9.7e-06 25.8 4.7 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330508757|ref|YP_004385185.1| - 1.9e-05 24.2 19.2 0.0041 16.9 2.2 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330508757|ref|YP_004385185.1| - 0.00018 21.7 17.2 0.00019 21.6 7.7 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330508757|ref|YP_004385185.1| - 0.0002 22.0 9.4 0.011 16.5 0.2 3.1 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|330508757|ref|YP_004385185.1| - 0.00028 20.3 20.3 0.0043 16.5 2.2 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330508757|ref|YP_004385185.1| - 0.0032 17.2 10.0 0.01 15.6 0.9 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330508757|ref|YP_004385185.1| - 0.022 15.1 10.2 0.57 10.6 0.5 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|330508757|ref|YP_004385185.1| - 0.023 15.0 1.3 0.023 15.0 0.9 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330508757|ref|YP_004385185.1| - 0.29 11.7 0.1 0.29 11.7 0.1 3.4 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|330508757|ref|YP_004385185.1| - 1.5 9.5 29.2 0.41 11.3 3.5 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330508757|ref|YP_004385185.1| - 2.8 7.8 21.6 3.3 7.6 2.4 3.5 3 1 1 4 4 4 0 4Fe-4S dicluster domain HIT PF01230.18 gi|330508758|ref|YP_004385186.1| - 9.4e-18 64.5 0.0 1.4e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|330508758|ref|YP_004385186.1| - 1.2e-08 35.2 0.0 1.9e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|330508758|ref|YP_004385186.1| - 1.4e-05 24.7 0.0 1.9e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 FAD-oxidase_C PF02913.14 gi|330508759|ref|YP_004385187.1| - 9.2e-56 188.9 0.0 1.1e-55 188.6 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|330508759|ref|YP_004385187.1| - 1.8e-44 150.5 0.1 3.4e-44 149.7 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain DsbD PF02683.10 gi|330508760|ref|YP_004385188.1| - 8e-19 68.0 16.1 2.5e-18 66.4 11.2 1.8 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|330508760|ref|YP_004385188.1| - 3.3e-10 40.0 22.5 7e-05 22.6 3.8 3.0 2 1 0 2 2 2 2 Cytochrome C biogenesis protein transmembrane region AhpC-TSA PF00578.16 gi|330508760|ref|YP_004385188.1| - 2.5e-06 27.1 0.0 4.5e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|330508760|ref|YP_004385188.1| - 0.0001 21.8 0.0 0.00016 21.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin E1-E2_ATPase PF00122.15 gi|330508760|ref|YP_004385188.1| - 0.022 13.8 0.2 0.25 10.3 0.1 2.3 1 1 1 2 2 2 0 E1-E2 ATPase DUF1673 PF07895.6 gi|330508760|ref|YP_004385188.1| - 6.4 6.2 7.7 0.4 10.1 1.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1673) DUF2582 PF10771.4 gi|330508762|ref|YP_004385190.1| - 7.8e-16 57.6 0.1 1e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) TrmB PF01978.14 gi|330508762|ref|YP_004385190.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AA_permease_2 PF13520.1 gi|330508763|ref|YP_004385191.1| - 2.1e-14 52.9 15.9 2.1e-14 52.9 11.0 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|330508763|ref|YP_004385191.1| - 1.1e-09 37.2 12.1 1.3e-09 36.9 8.4 1.1 1 0 0 1 1 1 1 Amino acid permease Anti-adapt_IraP PF10796.4 gi|330508764|ref|YP_004385192.1| - 0.071 13.4 4.0 0.11 12.8 0.7 2.5 1 1 2 3 3 3 0 Sigma-S stabilisation anti-adaptor protein FliE PF02049.13 gi|330508764|ref|YP_004385192.1| - 0.24 11.4 2.4 0.74 9.8 0.3 2.2 2 0 0 2 2 2 0 Flagellar hook-basal body complex protein FliE DUF2815 PF10991.3 gi|330508764|ref|YP_004385192.1| - 0.41 10.1 2.9 2 7.9 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2815) CHAT PF12770.2 gi|330508765|ref|YP_004385193.1| - 2.8e-19 69.3 0.0 7.2e-19 68.0 0.0 1.8 1 1 0 1 1 1 1 CHAT domain Peptidase_C25 PF01364.13 gi|330508765|ref|YP_004385193.1| - 0.033 13.1 0.0 0.053 12.4 0.0 1.3 1 0 0 1 1 1 0 Peptidase family C25 TPR_12 PF13424.1 gi|330508766|ref|YP_004385194.1| - 1.3e-294 951.0 67.4 1.2e-26 92.4 0.1 10.5 2 1 12 14 14 14 14 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330508766|ref|YP_004385194.1| - 6.1e-221 709.2 35.3 2.3e-15 55.9 0.1 16.1 16 0 0 16 16 16 15 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330508766|ref|YP_004385194.1| - 4.4e-107 345.7 21.8 3.3e-07 29.6 0.0 15.5 16 0 0 16 16 15 15 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330508766|ref|YP_004385194.1| - 1.2e-84 271.5 33.7 3.3e-05 23.3 0.0 15.8 16 0 0 16 16 16 15 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330508766|ref|YP_004385194.1| - 1.5e-84 277.6 45.5 1e-11 44.3 0.3 8.6 6 1 0 8 8 8 8 TPR repeat TPR_2 PF07719.12 gi|330508766|ref|YP_004385194.1| - 3.6e-79 254.4 32.9 0.00011 21.8 0.0 16.0 16 0 0 16 16 16 15 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330508766|ref|YP_004385194.1| - 3.6e-67 217.2 31.3 0.00031 20.3 0.1 15.5 15 0 0 15 15 15 15 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330508766|ref|YP_004385194.1| - 1.9e-60 196.0 47.7 0.00079 19.4 0.0 15.9 15 1 0 15 15 15 15 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330508766|ref|YP_004385194.1| - 1.4e-55 184.9 79.8 8.6e-08 32.6 0.8 10.4 2 2 12 14 14 14 14 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330508766|ref|YP_004385194.1| - 4.7e-48 161.4 27.4 0.00027 21.2 0.0 13.1 2 2 13 15 15 15 15 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330508766|ref|YP_004385194.1| - 3.6e-44 145.2 34.0 0.038 14.6 0.1 15.8 7 6 9 16 16 15 12 Tetratricopeptide repeat TPR_3 PF07720.7 gi|330508766|ref|YP_004385194.1| - 7.1e-34 115.0 0.0 0.13 12.1 0.0 15.5 16 0 0 16 16 16 6 Tetratricopeptide repeat Apc3 PF12895.2 gi|330508766|ref|YP_004385194.1| - 6.1e-29 99.9 17.3 3.6e-06 27.0 0.0 9.4 1 1 10 11 11 11 11 Anaphase-promoting complex, cyclosome, subunit 3 DUF630 PF04783.7 gi|330508766|ref|YP_004385194.1| - 1.1e-21 76.4 10.3 0.12 12.2 0.0 12.8 7 4 6 13 13 13 2 Protein of unknown function (DUF630) TPR_4 PF07721.9 gi|330508766|ref|YP_004385194.1| - 3e-20 70.5 0.0 22 5.8 0.0 13.6 14 0 0 14 14 14 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330508766|ref|YP_004385194.1| - 3.2e-20 71.1 31.1 5.6 7.6 0.0 15.8 16 0 0 16 16 15 0 Tetratricopeptide repeat SNAP PF14938.1 gi|330508766|ref|YP_004385194.1| - 3.8e-20 72.2 0.0 0.00012 21.3 0.0 4.9 1 1 4 5 5 5 4 Soluble NSF attachment protein, SNAP Apc5 PF12862.2 gi|330508766|ref|YP_004385194.1| - 1.1e-15 57.1 12.5 0.29 11.0 0.0 10.6 1 1 9 10 10 10 5 Anaphase-promoting complex subunit 5 TPR_5 PF12688.2 gi|330508766|ref|YP_004385194.1| - 2.3e-15 56.6 12.5 0.097 12.7 0.1 10.3 4 3 8 12 12 12 2 Tetratrico peptide repeat DUF4404 PF14357.1 gi|330508766|ref|YP_004385194.1| - 1.3e-12 47.9 0.0 57 4.2 0.0 12.5 13 2 1 14 14 14 0 Domain of unknown function (DUF4404) DUF1956 PF09209.6 gi|330508766|ref|YP_004385194.1| - 1.5e-09 37.8 0.0 38 4.2 0.0 9.8 12 0 0 12 12 12 0 Domain of unknown function (DUF1956) Rab5-bind PF09311.6 gi|330508766|ref|YP_004385194.1| - 4.7e-07 29.8 0.0 19 5.0 0.0 7.3 5 2 5 10 10 10 0 Rabaptin-like protein Clathrin PF00637.15 gi|330508766|ref|YP_004385194.1| - 6.4e-06 25.8 1.0 0.62 9.6 0.0 5.2 4 1 1 5 5 5 1 Region in Clathrin and VPS Asparaginase_II PF06089.7 gi|330508766|ref|YP_004385194.1| - 9.1e-06 24.5 1.8 38 2.8 0.0 8.6 3 3 5 11 11 11 0 L-asparaginase II BTAD PF03704.12 gi|330508766|ref|YP_004385194.1| - 6.2e-05 23.3 30.8 0.91 9.8 0.4 11.4 1 1 11 13 13 13 1 Bacterial transcriptional activator domain EpsG PF14897.1 gi|330508766|ref|YP_004385194.1| - 0.00054 18.9 6.6 10 4.9 0.0 7.6 4 2 5 9 9 9 0 EpsG family DUF1281 PF06924.6 gi|330508766|ref|YP_004385194.1| - 0.0045 16.3 0.0 96 2.3 0.0 6.5 9 0 0 9 9 8 0 Protein of unknown function (DUF1281) RPN7 PF10602.4 gi|330508766|ref|YP_004385194.1| - 0.028 13.8 6.0 22 4.3 0.0 6.9 6 1 2 8 8 8 0 26S proteasome subunit RPN7 zf-C4pol PF14260.1 gi|330508766|ref|YP_004385194.1| - 0.033 14.1 0.0 20 5.2 0.0 4.4 4 0 0 4 4 4 0 C4-type zinc-finger of DNA polymerase delta Foie-gras_1 PF11817.3 gi|330508766|ref|YP_004385194.1| - 0.14 11.6 24.3 17 4.7 0.0 9.4 11 1 1 12 12 12 0 Foie gras liver health family 1 Glucokinase PF02685.11 gi|330508766|ref|YP_004385194.1| - 0.3 9.8 0.0 1.6e+02 0.9 0.0 4.4 4 2 1 6 6 6 0 Glucokinase Flavoprotein PF02441.14 gi|330508767|ref|YP_004385195.1| - 1.2e-30 105.8 0.0 1.6e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein Nuc-transf PF10127.4 gi|330508768|ref|YP_004385196.1| - 3.8e-14 52.6 0.0 4.9e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Predicted nucleotidyltransferase NTP_transf_2 PF01909.18 gi|330508768|ref|YP_004385196.1| - 0.1 12.9 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyltransferase domain DS PF01916.12 gi|330508769|ref|YP_004385197.1| - 8.3e-86 287.7 0.0 9.5e-86 287.5 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase UPF1_Zn_bind PF09416.5 gi|330508769|ref|YP_004385197.1| - 0.11 12.1 0.1 0.85 9.1 0.1 2.0 2 0 0 2 2 2 0 RNA helicase (UPF2 interacting domain) Oxidored_q4 PF00507.14 gi|330508770|ref|YP_004385198.1| - 4.4e-24 84.2 13.9 2.6e-23 81.7 8.2 2.5 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Oxidored_q6 PF01058.17 gi|330508771|ref|YP_004385199.1| - 5.5e-20 71.3 0.0 8.1e-20 70.7 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RE_NgoFVII PF09565.5 gi|330508771|ref|YP_004385199.1| - 0.14 11.0 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 NgoFVII restriction endonuclease Complex1_49kDa PF00346.14 gi|330508772|ref|YP_004385200.1| - 1.7e-59 201.0 0.0 4e-41 140.8 0.0 2.3 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|330508772|ref|YP_004385200.1| - 2e-28 98.6 0.0 4.9e-28 97.3 0.0 1.7 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|330508772|ref|YP_004385200.1| - 5.2e-08 32.0 0.0 1.8e-05 23.7 0.0 2.5 3 0 0 3 3 3 2 Nickel-dependent hydrogenase NADHdh PF00146.16 gi|330508773|ref|YP_004385201.1| - 4.6e-83 278.8 14.2 5.7e-83 278.5 9.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|330508774|ref|YP_004385202.1| - 1.5e-13 49.6 19.4 2.8e-07 29.8 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330508774|ref|YP_004385202.1| - 2.2e-10 39.8 11.9 2.7e-05 23.7 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330508774|ref|YP_004385202.1| - 2.4e-10 40.6 13.5 4.5e-10 39.7 9.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508774|ref|YP_004385202.1| - 1.6e-09 37.4 10.7 2.7e-09 36.7 7.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330508774|ref|YP_004385202.1| - 2.5e-08 33.6 13.2 5.5e-08 32.5 9.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330508774|ref|YP_004385202.1| - 7.1e-08 32.5 13.8 1.5e-07 31.5 9.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330508774|ref|YP_004385202.1| - 4.6e-07 29.7 12.4 1e-06 28.6 8.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330508774|ref|YP_004385202.1| - 1.2e-06 28.0 17.8 0.0026 17.5 3.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330508774|ref|YP_004385202.1| - 1.5e-06 28.8 21.7 8.4e-06 26.4 7.0 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|330508774|ref|YP_004385202.1| - 8.9e-06 25.9 9.3 0.0022 18.3 0.2 2.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330508774|ref|YP_004385202.1| - 2.7e-05 24.1 16.3 0.0017 18.5 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|330508774|ref|YP_004385202.1| - 0.00054 20.3 15.1 0.0083 16.5 2.8 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330508774|ref|YP_004385202.1| - 0.018 15.5 22.4 0.082 13.4 2.7 3.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|330508774|ref|YP_004385202.1| - 0.032 14.7 26.1 0.59 10.8 6.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain HC2 PF07382.6 gi|330508774|ref|YP_004385202.1| - 0.046 13.5 18.2 0.081 12.7 12.6 1.4 1 0 0 1 1 1 0 Histone H1-like nucleoprotein HC2 Oxidored_q2 PF00420.19 gi|330508775|ref|YP_004385203.1| - 3.7e-25 87.3 6.4 4.1e-25 87.1 4.4 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CbiQ PF02361.11 gi|330508775|ref|YP_004385203.1| - 0.047 13.2 3.2 0.053 13.0 2.2 1.0 1 0 0 1 1 1 0 Cobalt transport protein Oxidored_q1 PF00361.15 gi|330508776|ref|YP_004385204.1| - 9.4e-79 264.4 18.4 9.4e-79 264.4 12.7 3.1 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|330508776|ref|YP_004385204.1| - 1.9e-11 43.3 0.1 1.9e-11 43.3 0.0 3.7 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|330508776|ref|YP_004385204.1| - 0.00023 20.7 0.9 0.088 12.3 0.0 3.0 3 0 0 3 3 3 2 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Oxidored_q1 PF00361.15 gi|330508777|ref|YP_004385205.1| - 1.6e-69 234.1 21.9 1.6e-69 234.1 15.2 2.3 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|330508777|ref|YP_004385205.1| - 0.00056 19.7 3.9 0.00056 19.7 2.7 5.0 4 3 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|330508778|ref|YP_004385206.1| - 3.6e-59 200.2 19.3 3.6e-59 200.2 13.4 3.2 2 2 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains ABC_tran PF00005.22 gi|330508780|ref|YP_004385208.1| - 2.5e-32 112.0 0.0 4.3e-32 111.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330508780|ref|YP_004385208.1| - 2.5e-18 67.0 1.6 4.3e-17 63.0 1.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|330508780|ref|YP_004385208.1| - 1.3e-10 40.9 0.1 1.1e-05 24.7 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|330508780|ref|YP_004385208.1| - 7e-09 35.2 0.1 1.9e-08 33.8 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|330508780|ref|YP_004385208.1| - 2.1e-06 27.1 0.1 4.2e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|330508780|ref|YP_004385208.1| - 0.00044 20.6 0.1 0.00059 20.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330508780|ref|YP_004385208.1| - 0.0015 18.5 0.0 0.0035 17.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|330508780|ref|YP_004385208.1| - 0.016 15.1 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|330508780|ref|YP_004385208.1| - 0.021 13.9 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|330508780|ref|YP_004385208.1| - 0.03 14.2 0.0 0.39 10.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|330508780|ref|YP_004385208.1| - 0.057 11.8 0.2 0.17 10.3 0.1 1.8 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|330508780|ref|YP_004385208.1| - 0.061 13.8 0.0 0.13 12.8 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein FtsK_SpoIIIE PF01580.13 gi|330508780|ref|YP_004385208.1| - 0.066 12.6 0.1 0.15 11.4 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|330508780|ref|YP_004385208.1| - 0.084 12.2 0.0 0.61 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain NACHT PF05729.7 gi|330508780|ref|YP_004385208.1| - 0.086 12.4 0.7 0.4 10.3 0.1 2.0 2 0 0 2 2 2 0 NACHT domain Tox-MPTase2 PF15638.1 gi|330508780|ref|YP_004385208.1| - 1.8 8.0 5.0 3.9 6.9 3.5 1.6 1 0 0 1 1 1 0 Metallopeptidase toxin 2 CbiQ PF02361.11 gi|330508781|ref|YP_004385209.1| - 2e-31 109.2 12.4 2.8e-31 108.8 8.6 1.1 1 0 0 1 1 1 1 Cobalt transport protein DUF4229 PF14012.1 gi|330508782|ref|YP_004385210.1| - 0.022 14.6 0.0 4.7 7.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) Lactamase_B PF00753.22 gi|330508783|ref|YP_004385211.1| - 1.7e-24 86.5 0.9 2.1e-24 86.2 0.6 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|330508783|ref|YP_004385211.1| - 1.7e-07 30.9 0.1 2.3e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RTC PF01137.16 gi|330508784|ref|YP_004385212.1| - 5.4e-83 277.2 0.0 6.2e-83 277.0 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|330508784|ref|YP_004385212.1| - 2.5e-21 75.6 0.2 5.3e-21 74.5 0.1 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain MFS_1 PF07690.11 gi|330508785|ref|YP_004385213.1| - 3.3e-44 151.0 44.5 3.3e-44 151.0 30.9 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330508785|ref|YP_004385213.1| - 3.6e-11 42.3 12.0 3.6e-11 42.3 8.3 3.0 3 0 0 3 3 3 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|330508785|ref|YP_004385213.1| - 6.1e-11 41.3 37.4 4.8e-07 28.5 3.1 3.0 1 1 2 3 3 3 2 MFS/sugar transport protein TRI12 PF06609.8 gi|330508785|ref|YP_004385213.1| - 5.3e-05 21.6 5.5 5.3e-05 21.6 3.8 2.1 1 1 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) FMN_red PF03358.10 gi|330508786|ref|YP_004385214.1| - 1.7e-32 112.0 0.0 2e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|330508786|ref|YP_004385214.1| - 6.6e-09 35.5 0.0 8.3e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold PRC PF05239.11 gi|330508787|ref|YP_004385215.1| - 1.7e-13 50.1 1.1 2e-13 49.9 0.8 1.0 1 0 0 1 1 1 1 PRC-barrel domain Thg1C PF14413.1 gi|330508788|ref|YP_004385216.1| - 6e-23 80.8 0.0 8.9e-23 80.2 0.0 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain Thg1 PF04446.7 gi|330508788|ref|YP_004385216.1| - 9.5e-22 77.0 0.0 1.5e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Sigma70_r4_2 PF08281.7 gi|330508789|ref|YP_004385217.1| - 0.00042 19.7 0.1 1.4 8.4 0.0 3.7 4 0 0 4 4 4 2 Sigma-70, region 4 MFS_1 PF07690.11 gi|330508789|ref|YP_004385217.1| - 0.034 12.8 2.6 0.024 13.3 0.6 1.5 2 0 0 2 2 2 0 Major Facilitator Superfamily RuBisCO_large PF00016.15 gi|330508790|ref|YP_004385218.1| - 9.1e-75 251.3 0.0 5.8e-57 192.8 0.0 2.1 1 1 1 2 2 2 2 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|330508790|ref|YP_004385218.1| - 6.1e-23 80.8 0.0 1.2e-22 79.8 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain Cache_2 PF08269.6 gi|330508791|ref|YP_004385219.1| - 2e-18 66.1 0.2 1.6e-08 34.3 0.1 2.5 2 0 0 2 2 2 2 Cache domain AP_endonuc_2 PF01261.19 gi|330508791|ref|YP_004385219.1| - 0.014 14.6 0.1 0.75 9.0 0.0 2.5 1 1 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF4261 PF14080.1 gi|330508791|ref|YP_004385219.1| - 0.1 12.4 0.2 0.58 10.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4261) SbcCD_C PF13558.1 gi|330508791|ref|YP_004385219.1| - 0.12 12.2 0.9 0.21 11.5 0.6 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Alkyl_sulf_dimr PF14863.1 gi|330508792|ref|YP_004385220.1| - 5.9e-53 178.8 1.3 5.9e-53 178.8 0.9 1.7 2 0 0 2 2 2 1 Alkyl sulfatase dimerisation Alkyl_sulf_C PF14864.1 gi|330508792|ref|YP_004385220.1| - 2.1e-32 111.7 0.4 4.3e-32 110.7 0.1 1.7 2 0 0 2 2 2 1 Alkyl sulfatase C-terminal Lactamase_B PF00753.22 gi|330508792|ref|YP_004385220.1| - 2.5e-27 95.8 0.3 3.8e-27 95.2 0.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|330508792|ref|YP_004385220.1| - 0.00017 21.2 0.0 0.00029 20.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF2196 PF09962.4 gi|330508793|ref|YP_004385221.1| - 1.2e-33 114.6 2.1 1.4e-33 114.4 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) zinc_ribbon_6 PF14599.1 gi|330508795|ref|YP_004385223.1| - 0.006 16.3 0.6 0.012 15.3 0.4 1.5 1 1 0 1 1 1 1 Zinc-ribbon DZR PF12773.2 gi|330508795|ref|YP_004385223.1| - 0.0089 15.8 1.2 0.012 15.3 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330508795|ref|YP_004385223.1| - 0.017 14.3 2.2 0.26 10.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|330508795|ref|YP_004385223.1| - 0.036 13.5 1.7 0.67 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain LIM PF00412.17 gi|330508795|ref|YP_004385223.1| - 0.046 13.8 1.3 0.066 13.2 0.9 1.2 1 0 0 1 1 1 0 LIM domain OrfB_Zn_ribbon PF07282.6 gi|330508795|ref|YP_004385223.1| - 0.059 13.0 3.2 0.094 12.3 2.1 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|330508795|ref|YP_004385223.1| - 0.094 12.4 0.6 0.14 11.9 0.4 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Caprin-1_C PF12287.3 gi|330508795|ref|YP_004385223.1| - 0.17 11.2 2.2 0.18 11.1 1.5 1.0 1 0 0 1 1 1 0 Cytoplasmic activation/proliferation-associated protein-1 C term Zn-ribbon_8 PF09723.5 gi|330508795|ref|YP_004385223.1| - 0.18 11.8 2.5 0.26 11.2 1.8 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|330508795|ref|YP_004385223.1| - 0.21 11.3 3.1 0.38 10.4 2.1 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|330508795|ref|YP_004385223.1| - 0.29 10.7 2.2 0.53 9.8 1.5 1.4 1 1 0 1 1 1 0 Ribosomal protein S27 zf-C2H2_3 PF13878.1 gi|330508795|ref|YP_004385223.1| - 0.29 10.7 1.9 0.9 9.1 0.2 2.0 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_5 PF13719.1 gi|330508795|ref|YP_004385223.1| - 0.39 10.3 3.3 0.74 9.4 2.3 1.5 1 1 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|330508795|ref|YP_004385223.1| - 0.88 9.1 3.8 4.4 6.8 0.2 2.1 1 1 2 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Auto_anti-p27 PF06677.7 gi|330508795|ref|YP_004385223.1| - 0.88 9.3 3.7 2.4 7.9 2.5 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF329 PF03884.9 gi|330508795|ref|YP_004385223.1| - 1.6 8.3 4.3 4 7.0 2.9 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-trcl PF13451.1 gi|330508795|ref|YP_004385223.1| - 5.8 6.6 6.1 19 4.9 0.4 2.2 1 1 1 2 2 2 0 Probable zinc-binding domain DUF488 PF04343.8 gi|330508798|ref|YP_004385226.1| - 2.3e-30 105.4 0.1 2.6e-30 105.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Dak1_2 PF13684.1 gi|330508798|ref|YP_004385226.1| - 0.093 11.6 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Dihydroxyacetone kinase family 2Fe-2S_thioredx PF01257.14 gi|330508799|ref|YP_004385227.1| - 4.9e-50 168.9 0.0 5.4e-50 168.7 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin HTH_23 PF13384.1 gi|330508799|ref|YP_004385227.1| - 0.014 14.9 0.0 0.084 12.5 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.1 gi|330508799|ref|YP_004385227.1| - 0.082 12.9 0.0 0.97 9.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Complex1_51K PF01512.12 gi|330508800|ref|YP_004385228.1| - 2e-43 147.7 0.0 3.3e-43 147.0 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|330508800|ref|YP_004385228.1| - 1.2e-17 62.7 0.6 1.2e-17 62.7 0.4 2.0 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer4 PF00037.22 gi|330508800|ref|YP_004385228.1| - 5e-10 38.5 14.2 9.4e-07 28.1 2.7 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain SLBB PF10531.4 gi|330508800|ref|YP_004385228.1| - 1.4e-09 37.6 2.6 2.8e-09 36.7 1.8 1.5 1 0 0 1 1 1 1 SLBB domain Fer4_10 PF13237.1 gi|330508800|ref|YP_004385228.1| - 6.6e-09 35.4 9.4 6.6e-09 35.4 6.5 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330508800|ref|YP_004385228.1| - 1.2e-07 31.2 25.7 0.0001 21.9 2.2 3.9 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330508800|ref|YP_004385228.1| - 1.6e-07 31.6 9.9 1.6e-07 31.6 6.9 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330508800|ref|YP_004385228.1| - 4.8e-07 29.9 11.5 4.8e-07 29.9 7.9 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330508800|ref|YP_004385228.1| - 9.4e-06 25.2 12.8 0.00031 20.4 2.0 4.8 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330508800|ref|YP_004385228.1| - 2.9e-05 23.8 11.3 2.9e-05 23.8 7.8 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|330508800|ref|YP_004385228.1| - 0.00018 21.3 3.3 0.00045 20.0 2.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|330508800|ref|YP_004385228.1| - 0.0002 21.6 11.7 0.031 14.6 1.7 2.9 1 1 1 2 2 2 2 4Fe-4S single cluster domain 2Fe-2S_thioredx PF01257.14 gi|330508800|ref|YP_004385228.1| - 0.00077 19.0 0.0 0.0019 17.7 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Fer4_8 PF13183.1 gi|330508800|ref|YP_004385228.1| - 0.00087 19.2 17.0 0.011 15.7 0.5 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330508800|ref|YP_004385228.1| - 0.012 16.2 1.1 0.012 16.2 0.8 3.3 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|330508800|ref|YP_004385228.1| - 0.016 15.7 1.9 0.016 15.7 1.3 3.6 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|330508800|ref|YP_004385228.1| - 0.027 14.8 19.6 0.099 13.0 1.2 3.5 2 1 3 5 5 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330508800|ref|YP_004385228.1| - 0.4 11.1 19.1 0.29 11.6 1.4 3.0 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330508800|ref|YP_004385228.1| - 1.1 10.0 25.8 0.13 12.8 3.1 3.7 3 0 0 3 3 2 0 4Fe-4S binding domain FrhB_FdhB_C PF04432.8 gi|330508801|ref|YP_004385229.1| - 1.4e-37 128.5 1.2 2.3e-37 127.8 0.0 2.0 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Fer2_4 PF13510.1 gi|330508801|ref|YP_004385229.1| - 2.2e-16 59.4 0.0 5e-16 58.2 0.0 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FrhB_FdhB_N PF04422.8 gi|330508801|ref|YP_004385229.1| - 1.1e-14 54.0 0.2 2e-14 53.1 0.1 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer2 PF00111.22 gi|330508801|ref|YP_004385229.1| - 2.7e-08 33.4 0.1 2.7e-08 33.4 0.1 2.8 3 0 0 3 3 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_21 PF14697.1 gi|330508801|ref|YP_004385229.1| - 2.9e-07 30.2 7.5 2.9e-07 30.2 5.2 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508801|ref|YP_004385229.1| - 5.5e-07 29.2 8.9 5.5e-07 29.2 6.2 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330508801|ref|YP_004385229.1| - 2.8e-06 26.6 2.4 2.8e-06 26.6 1.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330508801|ref|YP_004385229.1| - 8.9e-06 25.9 22.5 0.00013 22.2 8.5 3.0 3 1 2 5 5 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330508801|ref|YP_004385229.1| - 4.5e-05 23.6 11.2 4.5e-05 23.6 7.8 2.9 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330508801|ref|YP_004385229.1| - 6.5e-05 22.8 8.9 6.5e-05 22.8 6.2 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330508801|ref|YP_004385229.1| - 0.003 18.2 0.5 0.003 18.2 0.3 3.2 4 0 0 4 4 2 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|330508801|ref|YP_004385229.1| - 0.0039 16.9 3.7 0.0039 16.9 2.6 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330508801|ref|YP_004385229.1| - 0.006 16.4 3.2 0.006 16.4 2.2 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330508801|ref|YP_004385229.1| - 0.02 15.4 9.7 1.2 9.7 1.1 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|330508801|ref|YP_004385229.1| - 0.022 15.0 2.6 0.022 15.0 1.8 4.0 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|330508801|ref|YP_004385229.1| - 0.024 15.0 0.4 0.024 15.0 0.3 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|330508801|ref|YP_004385229.1| - 0.36 11.2 15.2 1.3 9.4 2.9 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|330508801|ref|YP_004385229.1| - 4.2 7.7 18.5 20 5.6 10.3 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain SRP_SPB PF02978.14 gi|330508802|ref|YP_004385230.1| - 0.043 14.0 0.0 0.064 13.5 0.0 1.2 1 0 0 1 1 1 0 Signal peptide binding domain DUF3242 PF11586.3 gi|330508802|ref|YP_004385230.1| - 0.047 13.2 0.1 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3242) CoA_binding_3 PF13727.1 gi|330508803|ref|YP_004385231.1| - 0.0008 19.2 2.5 0.01 15.6 0.2 2.2 2 0 0 2 2 2 2 CoA-binding domain DUF2142 PF09913.4 gi|330508803|ref|YP_004385231.1| - 0.72 8.4 7.8 0.73 8.4 4.3 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2142) DUF3796 PF12676.2 gi|330508803|ref|YP_004385231.1| - 0.91 9.7 5.1 1.4 9.1 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3796) Methyltransf_31 PF13847.1 gi|330508804|ref|YP_004385232.1| - 5.9e-38 129.8 0.0 1.1e-37 129.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330508804|ref|YP_004385232.1| - 1.4e-24 86.3 0.2 3.7e-24 85.0 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330508804|ref|YP_004385232.1| - 6.8e-19 67.9 0.1 1.3e-18 67.0 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|330508804|ref|YP_004385232.1| - 1e-16 61.5 0.0 1.8e-16 60.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330508804|ref|YP_004385232.1| - 1.4e-15 57.4 0.0 2.9e-15 56.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330508804|ref|YP_004385232.1| - 1.1e-14 54.4 0.0 1.5e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330508804|ref|YP_004385232.1| - 8.2e-12 45.4 0.0 1.5e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330508804|ref|YP_004385232.1| - 3.7e-11 43.0 0.0 6.8e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|330508804|ref|YP_004385232.1| - 9e-11 41.7 0.0 1.4e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|330508804|ref|YP_004385232.1| - 7.8e-07 28.4 0.0 1.1e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|330508804|ref|YP_004385232.1| - 1.1e-06 28.1 0.1 2.8e-06 26.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|330508804|ref|YP_004385232.1| - 2e-06 27.6 0.1 3.9e-06 26.6 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase UPF0020 PF01170.13 gi|330508804|ref|YP_004385232.1| - 2e-05 24.2 0.0 3.6e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|330508804|ref|YP_004385232.1| - 0.00043 19.9 0.0 0.0009 18.9 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|330508804|ref|YP_004385232.1| - 0.0016 17.5 0.0 0.0022 17.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.12 gi|330508804|ref|YP_004385232.1| - 0.0021 17.1 0.0 0.004 16.2 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_4 PF02390.12 gi|330508804|ref|YP_004385232.1| - 0.0066 15.5 0.0 0.015 14.3 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase NodS PF05401.6 gi|330508804|ref|YP_004385232.1| - 0.031 13.6 0.0 0.082 12.2 0.0 1.6 2 0 0 2 2 2 0 Nodulation protein S (NodS) Fibrillarin PF01269.12 gi|330508804|ref|YP_004385232.1| - 0.052 12.4 0.0 0.088 11.7 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Macro PF01661.16 gi|330508805|ref|YP_004385233.1| - 9.5e-44 148.0 0.0 1.3e-43 147.6 0.0 1.2 1 0 0 1 1 1 1 Macro domain HATPase_c PF02518.21 gi|330508806|ref|YP_004385234.1| - 3.7e-30 103.9 0.1 7.7e-30 102.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|330508806|ref|YP_004385234.1| - 5.3e-28 97.2 0.1 1e-27 96.3 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|330508806|ref|YP_004385234.1| - 1.6e-22 79.8 0.0 2e-10 40.9 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|330508806|ref|YP_004385234.1| - 1.7e-20 73.1 0.0 6.3e-10 39.0 0.0 3.4 3 0 0 3 3 3 3 PAS fold HisKA PF00512.20 gi|330508806|ref|YP_004385234.1| - 6e-19 67.8 2.0 2e-18 66.1 0.2 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|330508806|ref|YP_004385234.1| - 3.1e-10 39.8 0.0 3.5e-07 29.9 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|330508806|ref|YP_004385234.1| - 1.9e-05 24.3 0.0 0.00059 19.6 0.0 2.8 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|330508806|ref|YP_004385234.1| - 2.5e-05 24.2 0.0 0.98 9.5 0.0 3.7 3 0 0 3 3 3 2 PAS fold PAS_10 PF13596.1 gi|330508806|ref|YP_004385234.1| - 0.00016 21.8 0.0 0.9 9.8 0.0 3.9 4 0 0 4 4 4 1 PAS domain HATPase_c_3 PF13589.1 gi|330508806|ref|YP_004385234.1| - 0.0071 16.0 0.1 0.017 14.7 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|330508806|ref|YP_004385234.1| - 0.0084 16.1 0.0 4.3 7.3 0.0 3.8 3 1 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.1 gi|330508806|ref|YP_004385234.1| - 0.077 12.7 0.0 0.35 10.6 0.0 2.2 1 0 0 1 1 1 0 GHKL domain TrmE_N PF10396.4 gi|330508806|ref|YP_004385234.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 GTP-binding protein TrmE N-terminus Aminotran_1_2 PF00155.16 gi|330508807|ref|YP_004385235.1| - 6.5e-46 156.9 0.0 8.1e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|330508807|ref|YP_004385235.1| - 0.088 11.9 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Radical_SAM PF04055.16 gi|330508808|ref|YP_004385236.1| - 6e-07 29.7 0.0 1.8e-06 28.1 0.0 1.9 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|330508808|ref|YP_004385236.1| - 2e-05 24.5 0.0 5.5e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Beta-Casp PF10996.3 gi|330508808|ref|YP_004385236.1| - 0.017 15.0 0.0 0.052 13.5 0.0 1.8 1 0 0 1 1 1 0 Beta-Casp domain MS_channel PF00924.13 gi|330508809|ref|YP_004385237.1| - 6.9e-25 87.5 7.9 6.9e-25 87.5 5.4 2.2 2 1 0 2 2 2 1 Mechanosensitive ion channel TrkH PF02386.11 gi|330508810|ref|YP_004385238.1| - 4.5e-50 170.2 28.3 5.4e-49 166.6 16.1 2.5 2 0 0 2 2 2 2 Cation transport protein PXA PF02194.10 gi|330508811|ref|YP_004385239.1| - 0.0034 16.9 2.5 0.0038 16.8 1.7 1.1 1 0 0 1 1 1 1 PXA domain DUF2130 PF09903.4 gi|330508811|ref|YP_004385239.1| - 0.049 12.3 5.0 0.055 12.2 3.5 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2130) Use1 PF09753.4 gi|330508811|ref|YP_004385239.1| - 0.049 13.0 5.9 0.063 12.6 4.1 1.2 1 0 0 1 1 1 0 Membrane fusion protein Use1 Rota_NSP4 PF01452.11 gi|330508811|ref|YP_004385239.1| - 0.07 12.4 2.8 0.082 12.2 1.9 1.1 1 0 0 1 1 1 0 Rotavirus non structural protein FixH PF05751.6 gi|330508811|ref|YP_004385239.1| - 0.07 12.9 6.0 0.097 12.4 4.0 1.3 1 1 0 1 1 1 0 FixH DUF2201_N PF13203.1 gi|330508811|ref|YP_004385239.1| - 0.089 11.9 4.9 0.11 11.6 3.4 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain DUF2146 PF10220.4 gi|330508811|ref|YP_004385239.1| - 0.098 10.6 2.8 0.12 10.3 1.9 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2146) DUF4407 PF14362.1 gi|330508811|ref|YP_004385239.1| - 0.11 11.4 13.6 0.14 11.1 9.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3393 PF11873.3 gi|330508811|ref|YP_004385239.1| - 0.14 11.7 4.5 0.17 11.3 3.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3393) EspB PF05802.6 gi|330508811|ref|YP_004385239.1| - 0.15 10.9 18.5 0.2 10.5 12.8 1.2 1 0 0 1 1 1 0 Enterobacterial EspB protein DUF1212 PF06738.7 gi|330508811|ref|YP_004385239.1| - 0.16 11.4 4.3 0.24 10.8 2.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) AAA_13 PF13166.1 gi|330508811|ref|YP_004385239.1| - 0.18 10.2 8.4 0.21 10.0 5.8 1.0 1 0 0 1 1 1 0 AAA domain GAS PF13851.1 gi|330508811|ref|YP_004385239.1| - 0.23 10.6 9.7 0.29 10.3 6.7 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Spc7 PF08317.6 gi|330508811|ref|YP_004385239.1| - 0.26 9.9 7.0 0.32 9.6 4.8 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein EcsC PF12787.2 gi|330508811|ref|YP_004385239.1| - 0.32 10.3 7.1 0.49 9.7 4.9 1.3 1 1 0 1 1 1 0 EcsC protein family DUF2077 PF09850.4 gi|330508811|ref|YP_004385239.1| - 0.42 9.9 5.8 0.58 9.5 0.1 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2077) Fmp27_WPPW PF10359.4 gi|330508811|ref|YP_004385239.1| - 0.54 8.6 4.8 0.63 8.3 3.3 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF1510 PF07423.6 gi|330508811|ref|YP_004385239.1| - 0.56 9.5 13.8 0.82 8.9 9.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) DUF607 PF04678.8 gi|330508811|ref|YP_004385239.1| - 0.57 10.0 6.8 0.77 9.6 4.7 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF607 Plasmid_stabil PF05016.9 gi|330508811|ref|YP_004385239.1| - 0.68 10.3 2.7 1.4 9.3 1.9 1.7 1 1 0 1 1 1 0 Plasmid stabilisation system protein DUF883 PF05957.8 gi|330508811|ref|YP_004385239.1| - 0.71 10.3 18.3 0.11 12.9 6.5 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) FUN14 PF04930.10 gi|330508811|ref|YP_004385239.1| - 0.8 10.0 7.4 0.21 11.8 0.7 2.2 1 1 1 2 2 2 0 FUN14 family Prenyltransf PF01255.14 gi|330508811|ref|YP_004385239.1| - 0.88 8.6 3.3 1.1 8.2 2.3 1.2 1 0 0 1 1 1 0 Putative undecaprenyl diphosphate synthase SID-1_RNA_chan PF13965.1 gi|330508811|ref|YP_004385239.1| - 0.89 7.6 3.1 0.94 7.5 2.2 1.1 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 Borrelia_P83 PF05262.6 gi|330508811|ref|YP_004385239.1| - 1 7.5 15.6 1.3 7.2 10.8 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein DUF3584 PF12128.3 gi|330508811|ref|YP_004385239.1| - 1.1 6.4 12.9 1.3 6.2 9.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) SpoIIIAH PF12685.2 gi|330508811|ref|YP_004385239.1| - 1.2 8.5 19.4 2.3 7.6 13.4 1.5 1 1 0 1 1 1 0 SpoIIIAH-like protein FAD-SLDH PF12318.3 gi|330508811|ref|YP_004385239.1| - 1.4 8.5 10.0 1.8 8.2 6.9 1.1 1 0 0 1 1 1 0 Membrane bound FAD containing D-sorbitol dehydrogenase NPV_P10 PF05531.7 gi|330508811|ref|YP_004385239.1| - 1.8 8.8 5.9 5.8 7.2 0.1 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein TPR_MLP1_2 PF07926.7 gi|330508811|ref|YP_004385239.1| - 1.9 8.2 16.2 2.8 7.6 11.2 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Med8 PF10232.4 gi|330508811|ref|YP_004385239.1| - 2.3 7.6 9.2 3 7.3 6.4 1.1 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 DUF3365 PF11845.3 gi|330508811|ref|YP_004385239.1| - 2.6 7.8 7.7 3.4 7.4 5.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3365) MT0933_antitox PF14013.1 gi|330508811|ref|YP_004385239.1| - 2.6 8.2 11.9 11 6.1 8.2 2.2 1 1 0 1 1 1 0 MT0933-like antitoxin protein APG6 PF04111.7 gi|330508811|ref|YP_004385239.1| - 3.8 6.4 9.7 5.1 6.0 6.7 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 LUC7 PF03194.10 gi|330508811|ref|YP_004385239.1| - 4.6 6.7 10.4 6.1 6.2 7.2 1.1 1 0 0 1 1 1 0 LUC7 N_terminus HAUS6_N PF14661.1 gi|330508811|ref|YP_004385239.1| - 4.8 6.4 9.7 5.9 6.1 6.7 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus DDHD PF02862.12 gi|330508811|ref|YP_004385239.1| - 5.4 6.7 6.1 6.7 6.4 4.3 1.1 1 0 0 1 1 1 0 DDHD domain COG2 PF06148.6 gi|330508811|ref|YP_004385239.1| - 6.9 6.5 8.6 1.5 8.7 1.8 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2360 PF10152.4 gi|330508811|ref|YP_004385239.1| - 7.1 6.8 10.8 9 6.5 7.5 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) TPR_14 PF13428.1 gi|330508811|ref|YP_004385239.1| - 7.6 7.4 10.0 1.6e+02 3.3 6.9 2.9 1 1 0 1 1 1 0 Tetratricopeptide repeat Cytochrom_C_2 PF01322.15 gi|330508811|ref|YP_004385239.1| - 9.7 6.7 19.5 28 5.2 13.4 1.7 1 1 0 1 1 1 0 Cytochrome C' Vfa1 PF08432.5 gi|330508811|ref|YP_004385239.1| - 9.8 6.1 12.0 14 5.6 8.3 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 TM2 PF05154.11 gi|330508812|ref|YP_004385240.1| - 9.5e-14 51.3 4.0 1.3e-13 50.9 2.8 1.2 1 0 0 1 1 1 1 TM2 domain DZR PF12773.2 gi|330508812|ref|YP_004385240.1| - 0.0019 18.0 1.8 0.0025 17.5 1.2 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330508812|ref|YP_004385240.1| - 0.0083 15.3 1.0 0.012 14.8 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|330508812|ref|YP_004385240.1| - 0.0085 15.7 7.4 0.013 15.1 5.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-RING_5 PF14634.1 gi|330508812|ref|YP_004385240.1| - 1.5 8.5 5.9 2.4 7.9 4.1 1.4 1 0 0 1 1 1 0 zinc-RING finger domain TF_Zn_Ribbon PF08271.7 gi|330508812|ref|YP_004385240.1| - 4.9 6.5 7.6 19 4.6 5.3 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|330508812|ref|YP_004385240.1| - 5.3 6.9 7.2 2.4 8.0 1.3 2.1 1 1 1 2 2 2 0 PhnA Zinc-Ribbon Zn_peptidase PF04228.8 gi|330508813|ref|YP_004385241.1| - 2e-111 371.9 0.3 2.3e-111 371.7 0.2 1.0 1 0 0 1 1 1 1 Putative neutral zinc metallopeptidase DUF955 PF06114.8 gi|330508813|ref|YP_004385241.1| - 0.014 15.1 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF955) OrfB_IS605 PF01385.14 gi|330508814|ref|YP_004385242.1| - 2.2e-39 135.2 0.0 4.2e-39 134.2 0.0 1.4 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330508814|ref|YP_004385242.1| - 2.9e-24 84.5 0.1 7.1e-24 83.2 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|330508814|ref|YP_004385242.1| - 1.8e-16 59.1 2.9 7.4e-16 57.2 2.3 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain DZR PF12773.2 gi|330508814|ref|YP_004385242.1| - 0.0042 16.8 0.3 0.0079 15.9 0.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330508814|ref|YP_004385242.1| - 0.055 12.6 0.1 0.11 11.7 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|330508814|ref|YP_004385242.1| - 0.076 12.8 0.4 0.29 10.9 0.3 2.0 1 0 0 1 1 1 0 Ribosomal protein L37e TF_Zn_Ribbon PF08271.7 gi|330508814|ref|YP_004385242.1| - 0.11 11.7 0.7 0.49 9.7 0.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding YhfH PF14149.1 gi|330508814|ref|YP_004385242.1| - 0.12 12.2 0.4 15 5.4 0.0 2.5 2 0 0 2 2 2 0 YhfH-like protein RecR PF02132.10 gi|330508814|ref|YP_004385242.1| - 0.6 9.5 4.8 3.1 7.3 0.2 2.8 2 1 1 3 3 3 0 RecR protein RNA_pol_L_2 PF13656.1 gi|330508815|ref|YP_004385243.1| - 1.8e-22 78.5 0.0 2.2e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|330508815|ref|YP_004385243.1| - 2.4e-09 36.1 0.0 3.1e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain ECR1_N PF14382.1 gi|330508816|ref|YP_004385244.1| - 7.1e-11 41.2 0.1 1.4e-10 40.2 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region Auto_anti-p27 PF06677.7 gi|330508816|ref|YP_004385244.1| - 0.00024 20.8 1.6 0.00039 20.1 1.1 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NOB1_Zn_bind PF08772.6 gi|330508816|ref|YP_004385244.1| - 0.019 14.7 0.9 0.039 13.7 0.6 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like S1 PF00575.18 gi|330508816|ref|YP_004385244.1| - 0.036 14.1 1.6 3 7.9 0.1 2.5 3 0 0 3 3 3 0 S1 RNA binding domain DZR PF12773.2 gi|330508816|ref|YP_004385244.1| - 0.037 13.8 0.4 0.06 13.1 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|330508816|ref|YP_004385244.1| - 0.067 12.8 0.8 0.1 12.2 0.5 1.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|330508816|ref|YP_004385244.1| - 0.19 10.9 2.0 0.25 10.5 0.3 1.8 2 0 0 2 2 2 0 zinc-ribbon domain Methyltransf_26 PF13659.1 gi|330508817|ref|YP_004385245.1| - 2.1e-17 63.2 0.1 3e-17 62.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330508817|ref|YP_004385245.1| - 4.9e-17 61.8 0.1 6.6e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|330508817|ref|YP_004385245.1| - 7.4e-15 54.8 0.0 9.9e-15 54.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|330508817|ref|YP_004385245.1| - 2.9e-14 53.0 0.0 3.5e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|330508817|ref|YP_004385245.1| - 1.7e-12 47.9 0.2 2.8e-12 47.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330508817|ref|YP_004385245.1| - 1.5e-10 40.6 0.7 2e-10 40.2 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|330508817|ref|YP_004385245.1| - 2.3e-09 37.5 0.0 3.6e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|330508817|ref|YP_004385245.1| - 3.3e-07 29.8 0.0 4.6e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|330508817|ref|YP_004385245.1| - 4.2e-07 30.3 0.0 6.4e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|330508817|ref|YP_004385245.1| - 2.4e-06 27.2 0.0 3.5e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.1 gi|330508817|ref|YP_004385245.1| - 1.7e-05 24.6 0.0 2e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330508817|ref|YP_004385245.1| - 2.2e-05 24.8 0.1 3.5e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|330508817|ref|YP_004385245.1| - 0.00036 20.2 0.0 0.00044 19.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|330508817|ref|YP_004385245.1| - 0.00039 19.8 0.0 0.00051 19.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|330508817|ref|YP_004385245.1| - 0.0004 19.5 0.1 0.047 12.7 0.0 2.1 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|330508817|ref|YP_004385245.1| - 0.0014 18.0 0.0 0.0022 17.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) N6_N4_Mtase PF01555.13 gi|330508817|ref|YP_004385245.1| - 0.013 15.0 0.0 0.14 11.6 0.0 2.0 2 0 0 2 2 2 0 DNA methylase Ubie_methyltran PF01209.13 gi|330508817|ref|YP_004385245.1| - 0.013 14.6 0.0 0.017 14.2 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|330508817|ref|YP_004385245.1| - 0.016 14.7 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|330508817|ref|YP_004385245.1| - 0.027 13.5 0.0 0.034 13.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|330508817|ref|YP_004385245.1| - 0.032 13.2 0.1 0.07 12.1 0.0 1.6 2 0 0 2 2 2 0 Putative methyltransferase FmrO PF07091.6 gi|330508817|ref|YP_004385245.1| - 0.045 12.7 0.1 0.065 12.2 0.1 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) N6_Mtase PF02384.11 gi|330508817|ref|YP_004385245.1| - 0.047 12.7 0.0 0.18 10.8 0.0 1.8 1 1 0 1 1 1 0 N-6 DNA Methylase DOT1 PF08123.8 gi|330508817|ref|YP_004385245.1| - 0.075 12.3 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_10 PF05971.7 gi|330508817|ref|YP_004385245.1| - 0.13 11.4 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF890) TPR_12 PF13424.1 gi|330508818|ref|YP_004385246.1| - 4.3e-35 119.5 12.9 2.1e-14 53.2 0.1 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330508818|ref|YP_004385246.1| - 4.4e-22 77.4 12.8 2.9e-09 36.4 0.3 5.6 3 1 3 6 6 6 5 TPR repeat TPR_1 PF00515.23 gi|330508818|ref|YP_004385246.1| - 1.3e-21 75.2 4.5 0.00018 20.9 0.0 6.7 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330508818|ref|YP_004385246.1| - 7.5e-21 72.2 7.6 0.0047 16.6 0.0 7.1 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330508818|ref|YP_004385246.1| - 2.5e-20 70.7 8.9 0.0015 18.2 0.3 7.5 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330508818|ref|YP_004385246.1| - 4.2e-20 69.8 13.4 0.0001 21.7 0.1 7.7 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330508818|ref|YP_004385246.1| - 4.3e-08 33.1 20.2 0.25 12.0 0.0 8.1 5 2 5 10 10 8 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330508818|ref|YP_004385246.1| - 1.8e-06 27.6 15.5 0.092 12.7 0.0 6.0 7 0 0 7 7 7 3 Tetratricopeptide repeat SNAP PF14938.1 gi|330508818|ref|YP_004385246.1| - 6.8e-06 25.4 7.9 2e-05 23.9 1.7 3.1 2 1 1 3 3 3 1 Soluble NSF attachment protein, SNAP TPR_6 PF13174.1 gi|330508818|ref|YP_004385246.1| - 3.4e-05 24.0 14.1 6.9 7.3 0.0 7.1 7 0 0 7 7 6 2 Tetratricopeptide repeat RPN7 PF10602.4 gi|330508818|ref|YP_004385246.1| - 8.5e-05 22.0 3.5 0.0027 17.0 0.2 4.1 3 1 0 3 3 3 1 26S proteasome subunit RPN7 TPR_17 PF13431.1 gi|330508818|ref|YP_004385246.1| - 0.00082 19.3 5.9 0.4 10.9 0.1 4.9 5 0 0 5 5 4 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330508818|ref|YP_004385246.1| - 0.00093 19.7 17.5 0.84 10.3 0.1 6.1 2 1 6 8 8 7 3 Tetratricopeptide repeat Coat_F PF07875.7 gi|330508818|ref|YP_004385246.1| - 0.0035 17.4 0.0 0.015 15.3 0.0 2.1 1 0 0 1 1 1 1 Coat F domain Foie-gras_1 PF11817.3 gi|330508818|ref|YP_004385246.1| - 0.035 13.5 0.1 0.11 11.9 0.0 1.9 1 1 0 1 1 1 0 Foie gras liver health family 1 Clathrin PF00637.15 gi|330508818|ref|YP_004385246.1| - 0.044 13.3 0.4 13 5.3 0.0 3.3 2 1 1 3 3 3 0 Region in Clathrin and VPS TPR_9 PF13371.1 gi|330508818|ref|YP_004385246.1| - 0.12 12.2 9.0 3.8 7.4 0.1 5.2 4 2 0 4 4 4 0 Tetratricopeptide repeat SPO22 PF08631.5 gi|330508818|ref|YP_004385246.1| - 0.14 11.2 6.4 4.2 6.3 0.1 3.3 1 1 1 3 3 3 0 Meiosis protein SPO22/ZIP4 like TPR_4 PF07721.9 gi|330508818|ref|YP_004385246.1| - 9.7 6.9 15.4 0.21 12.1 0.6 4.9 6 0 0 6 6 4 0 Tetratricopeptide repeat eRF1_2 PF03464.10 gi|330508819|ref|YP_004385247.1| - 3.1e-37 127.8 0.0 4.8e-37 127.2 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|330508819|ref|YP_004385247.1| - 2.2e-30 105.2 0.1 4.2e-30 104.3 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|330508819|ref|YP_004385247.1| - 9.5e-22 76.9 0.0 1.8e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 RNA_binding PF01877.12 gi|330508820|ref|YP_004385248.1| - 3.2e-19 69.0 0.1 1.6e-18 66.8 0.0 1.9 1 1 0 1 1 1 1 RNA binding T2SM PF04612.7 gi|330508820|ref|YP_004385248.1| - 0.0019 17.9 0.0 0.0025 17.6 0.0 1.2 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M AP_endonuc_2 PF01261.19 gi|330508821|ref|YP_004385249.1| - 5.9e-33 113.9 0.5 9.7e-33 113.2 0.2 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Translin PF01997.11 gi|330508822|ref|YP_004385250.1| - 3.2e-40 137.8 0.1 4e-40 137.5 0.1 1.0 1 0 0 1 1 1 1 Translin family DUF1771 PF08590.5 gi|330508822|ref|YP_004385250.1| - 0.047 13.6 0.1 0.13 12.2 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) UBA_4 PF14555.1 gi|330508822|ref|YP_004385250.1| - 0.081 12.4 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 UBA-like domain tRNA-synt_2d PF01409.15 gi|330508823|ref|YP_004385251.1| - 1.4e-51 175.0 0.0 1.1e-48 165.6 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|330508823|ref|YP_004385251.1| - 0.0012 18.5 0.0 0.0028 17.2 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|330508823|ref|YP_004385251.1| - 0.048 12.4 0.1 5 5.7 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) Rib_5-P_isom_A PF06026.9 gi|330508824|ref|YP_004385252.1| - 1.8e-58 196.6 0.0 2.2e-58 196.3 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|330508824|ref|YP_004385252.1| - 3e-08 33.4 0.3 5.8e-06 26.0 0.0 2.1 1 1 1 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|330508824|ref|YP_004385252.1| - 0.0015 17.4 0.3 0.0032 16.3 0.1 1.6 1 1 1 2 2 2 1 Putative sugar-binding domain Cupin_2 PF07883.6 gi|330508825|ref|YP_004385253.1| - 4.3e-10 38.9 0.0 6.1e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|330508825|ref|YP_004385253.1| - 3e-07 30.2 0.0 3.7e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|330508825|ref|YP_004385253.1| - 1.3e-05 24.4 0.0 1.8e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|330508825|ref|YP_004385253.1| - 0.0006 19.4 0.0 0.00071 19.2 0.0 1.2 1 0 0 1 1 1 1 Cupin CENP-C_C PF11699.3 gi|330508825|ref|YP_004385253.1| - 0.00071 19.4 0.0 0.00087 19.2 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like AraC_binding_2 PF14525.1 gi|330508825|ref|YP_004385253.1| - 0.0034 16.9 0.0 0.0039 16.7 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain EutQ PF06249.7 gi|330508825|ref|YP_004385253.1| - 0.013 15.0 0.0 0.022 14.3 0.0 1.5 1 1 0 1 1 1 0 Ethanolamine utilisation protein EutQ Cupin_1 PF00190.17 gi|330508825|ref|YP_004385253.1| - 0.067 12.6 0.0 0.13 11.7 0.0 1.4 1 1 0 1 1 1 0 Cupin ARD PF03079.9 gi|330508825|ref|YP_004385253.1| - 0.076 12.9 0.0 0.095 12.6 0.0 1.1 1 0 0 1 1 1 0 ARD/ARD' family DUF1255 PF06865.6 gi|330508825|ref|YP_004385253.1| - 0.1 12.8 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1255) MannoseP_isomer PF01050.13 gi|330508825|ref|YP_004385253.1| - 0.12 11.9 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Ectoine_synth PF06339.7 gi|330508825|ref|YP_004385253.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase Lactamase_B_2 PF12706.2 gi|330508826|ref|YP_004385254.1| - 2.1e-25 89.4 0.0 2.7e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|330508826|ref|YP_004385254.1| - 2.7e-09 36.9 4.4 3.8e-08 33.1 3.0 2.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|330508826|ref|YP_004385254.1| - 0.00029 20.5 0.0 0.00045 19.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|330508826|ref|YP_004385254.1| - 0.16 10.8 3.1 2.4 6.9 0.3 2.4 2 1 1 3 3 3 0 cAMP phosphodiesterases class-II Hydrolase_3 PF08282.7 gi|330508827|ref|YP_004385255.1| - 1.4e-25 90.3 0.0 3.2e-15 56.4 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|330508827|ref|YP_004385255.1| - 5.3e-05 23.7 0.4 0.00078 19.9 0.3 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|330508827|ref|YP_004385255.1| - 0.00034 19.6 0.0 0.0018 17.2 0.0 1.9 2 0 0 2 2 2 1 Trehalose-phosphatase S6PP PF05116.8 gi|330508827|ref|YP_004385255.1| - 0.0024 17.1 0.0 0.014 14.6 0.0 1.9 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|330508827|ref|YP_004385255.1| - 0.0041 17.3 1.1 0.13 12.4 0.8 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|330508827|ref|YP_004385255.1| - 0.14 12.3 0.3 7 6.8 0.2 2.6 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase CxxCxxCC PF03692.10 gi|330508828|ref|YP_004385256.1| - 1.7e-13 50.8 0.7 1.7e-13 50.8 0.5 1.9 2 0 0 2 2 2 1 Putative zinc- or iron-chelating domain OEP PF02321.13 gi|330508829|ref|YP_004385257.1| - 0.00069 19.2 4.6 0.00075 19.1 1.5 1.9 2 0 0 2 2 2 1 Outer membrane efflux protein Hemolysin_N PF12563.3 gi|330508829|ref|YP_004385257.1| - 0.051 12.9 0.5 0.065 12.6 0.3 1.1 1 0 0 1 1 1 0 Hemolytic toxin N terminal DUF1168 PF06658.7 gi|330508829|ref|YP_004385257.1| - 0.1 12.0 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1168) HTH_45 PF14947.1 gi|330508830|ref|YP_004385258.1| - 1.4e-15 56.8 0.0 1.5e-15 56.7 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|330508830|ref|YP_004385258.1| - 0.025 14.2 0.0 0.036 13.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|330508830|ref|YP_004385258.1| - 0.066 12.8 0.0 0.1 12.2 0.0 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Trichoplein PF13868.1 gi|330508831|ref|YP_004385259.1| - 0.1 10.9 6.8 0.16 10.3 4.7 1.2 1 0 0 1 1 1 0 Tumour suppressor, Mitostatin Ribosomal_L15e PF00827.12 gi|330508832|ref|YP_004385260.1| - 2.8e-79 265.1 10.7 3.3e-79 264.8 7.4 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.12 gi|330508833|ref|YP_004385261.1| - 1.4e-27 96.0 0.1 1.7e-27 95.7 0.1 1.1 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.11 gi|330508834|ref|YP_004385262.1| - 5.4e-25 87.3 0.0 7.1e-25 86.9 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 RNase_P_Rpp14 PF01900.14 gi|330508835|ref|YP_004385263.1| - 2.5e-17 62.7 0.1 4.5e-17 61.9 0.0 1.4 2 0 0 2 2 2 1 Rpp14/Pop5 family GspL_C PF12693.2 gi|330508835|ref|YP_004385263.1| - 0.08 12.6 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 GspL periplasmic domain KH_1 PF00013.24 gi|330508836|ref|YP_004385264.1| - 1e-10 41.0 0.2 2e-10 40.1 0.1 1.5 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.1 gi|330508836|ref|YP_004385264.1| - 5.7e-08 31.9 0.1 1.3e-07 30.7 0.1 1.7 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|330508836|ref|YP_004385264.1| - 1.7e-07 31.1 0.0 3.6e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 S1 RNA binding domain KH_3 PF13014.1 gi|330508836|ref|YP_004385264.1| - 2.3e-05 23.9 0.2 6.5e-05 22.4 0.1 1.9 1 1 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|330508836|ref|YP_004385264.1| - 0.0001 21.7 0.3 0.00019 20.8 0.2 1.4 1 0 0 1 1 1 1 KH domain RNase_PH PF01138.16 gi|330508837|ref|YP_004385265.1| - 1.9e-33 115.5 0.0 2.9e-33 115.0 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|330508837|ref|YP_004385265.1| - 6.7e-17 61.1 0.2 1.3e-16 60.2 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|330508838|ref|YP_004385266.1| - 4.7e-26 91.6 0.0 6.9e-26 91.1 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|330508838|ref|YP_004385266.1| - 1.3e-07 31.4 0.1 2.3e-07 30.6 0.1 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.14 gi|330508839|ref|YP_004385267.1| - 3.2e-31 107.0 2.0 3.5e-31 106.9 1.4 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.6 gi|330508839|ref|YP_004385267.1| - 1.3e-05 24.7 1.1 1.9e-05 24.2 0.7 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|330508839|ref|YP_004385267.1| - 0.0023 17.8 2.4 0.088 12.7 0.1 2.3 2 0 0 2 2 2 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|330508839|ref|YP_004385267.1| - 0.0036 17.0 4.0 0.0054 16.5 2.7 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|330508839|ref|YP_004385267.1| - 0.0052 16.6 0.5 3 7.7 0.0 2.2 2 0 0 2 2 2 2 Rubredoxin UPF0547 PF10571.4 gi|330508839|ref|YP_004385267.1| - 0.0078 15.8 2.9 0.026 14.2 2.0 1.7 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF4379 PF14311.1 gi|330508839|ref|YP_004385267.1| - 0.011 15.4 1.3 0.27 11.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) A2L_zn_ribbon PF08792.5 gi|330508839|ref|YP_004385267.1| - 0.016 14.6 0.6 0.024 14.0 0.4 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain Elf1 PF05129.8 gi|330508839|ref|YP_004385267.1| - 0.019 14.6 2.3 0.04 13.6 1.6 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DZR PF12773.2 gi|330508839|ref|YP_004385267.1| - 0.028 14.2 2.3 0.06 13.1 1.6 1.7 1 1 0 1 1 1 0 Double zinc ribbon Sgf11 PF08209.6 gi|330508839|ref|YP_004385267.1| - 0.032 13.5 1.2 1.5 8.1 0.2 2.5 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Baculo_ME53 PF06061.6 gi|330508839|ref|YP_004385267.1| - 0.035 13.1 0.4 0.04 12.8 0.3 1.1 1 0 0 1 1 1 0 Baculoviridae ME53 zf-ribbon_3 PF13248.1 gi|330508839|ref|YP_004385267.1| - 0.048 12.8 2.4 1.1 8.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|330508839|ref|YP_004385267.1| - 0.05 13.1 3.6 0.66 9.5 0.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain NCD3G PF07562.9 gi|330508839|ref|YP_004385267.1| - 0.06 13.0 0.8 0.09 12.5 0.6 1.3 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR RNA_POL_M_15KD PF02150.11 gi|330508839|ref|YP_004385267.1| - 0.073 12.7 3.5 1.5 8.6 2.1 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit CpXC PF14353.1 gi|330508839|ref|YP_004385267.1| - 0.11 12.4 1.1 1.5 8.8 0.0 2.1 1 1 1 2 2 2 0 CpXC protein zf-UBP PF02148.14 gi|330508839|ref|YP_004385267.1| - 0.13 12.4 0.6 0.21 11.7 0.4 1.4 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein DUF1610 PF07754.6 gi|330508839|ref|YP_004385267.1| - 0.14 12.3 3.2 0.2 11.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) C1_1 PF00130.17 gi|330508839|ref|YP_004385267.1| - 0.14 11.9 1.1 0.23 11.2 0.7 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_4 PF13894.1 gi|330508839|ref|YP_004385267.1| - 0.18 12.2 1.5 16 6.0 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Rep_fac-A_C PF08646.5 gi|330508839|ref|YP_004385267.1| - 0.2 11.3 1.2 0.27 10.9 0.8 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain zf-C2H2 PF00096.21 gi|330508839|ref|YP_004385267.1| - 0.25 11.7 3.6 5.1 7.6 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type HypA PF01155.14 gi|330508839|ref|YP_004385267.1| - 0.34 10.5 2.3 3.8 7.2 0.2 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Ogr_Delta PF04606.7 gi|330508839|ref|YP_004385267.1| - 0.41 10.3 6.0 3.3 7.4 3.2 2.6 2 1 0 2 2 1 0 Ogr/Delta-like zinc finger zf-H2C2_2 PF13465.1 gi|330508839|ref|YP_004385267.1| - 0.43 10.9 5.3 6.3 7.2 0.4 2.3 1 1 1 2 2 2 0 Zinc-finger double domain DNA_RNApol_7kD PF03604.8 gi|330508839|ref|YP_004385267.1| - 0.44 10.0 3.1 0.92 9.0 2.1 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Mut7-C PF01927.11 gi|330508839|ref|YP_004385267.1| - 0.5 10.3 2.8 5 7.0 1.9 2.0 1 1 0 1 1 1 0 Mut7-C RNAse domain zf-HIT PF04438.11 gi|330508839|ref|YP_004385267.1| - 0.58 9.8 4.5 1.5 8.5 0.5 2.2 2 0 0 2 2 2 0 HIT zinc finger DUF2296 PF10058.4 gi|330508839|ref|YP_004385267.1| - 0.59 9.9 3.0 3.3 7.5 0.1 2.1 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DUF3797 PF12677.2 gi|330508839|ref|YP_004385267.1| - 1.1 8.9 4.2 1.1 8.9 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-ISL3 PF14690.1 gi|330508839|ref|YP_004385267.1| - 4.8 7.3 6.3 2.6 8.1 0.3 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.13 gi|330508839|ref|YP_004385267.1| - 6.6 6.4 6.8 17 5.1 0.6 2.3 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.8 gi|330508840|ref|YP_004385268.1| - 5e-09 35.4 9.0 7.1e-09 34.9 6.2 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DUF951 PF06107.6 gi|330508840|ref|YP_004385268.1| - 0.00029 20.2 4.9 0.0054 16.2 0.3 2.0 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF951) zf-ribbon_3 PF13248.1 gi|330508840|ref|YP_004385268.1| - 0.00056 19.0 0.3 0.1 11.8 0.0 2.0 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|330508840|ref|YP_004385268.1| - 0.001 18.4 1.8 0.0021 17.4 1.3 1.5 1 1 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|330508840|ref|YP_004385268.1| - 0.0012 18.5 2.0 0.0016 18.0 1.4 1.3 1 1 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|330508840|ref|YP_004385268.1| - 0.0028 16.9 1.4 0.0038 16.5 1.0 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|330508840|ref|YP_004385268.1| - 0.0057 16.4 2.9 0.25 11.1 0.0 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|330508840|ref|YP_004385268.1| - 0.0057 16.4 1.9 0.019 14.8 0.1 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG HypA PF01155.14 gi|330508840|ref|YP_004385268.1| - 0.0065 16.1 0.4 0.0067 16.0 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ISL3 PF14690.1 gi|330508840|ref|YP_004385268.1| - 0.0073 16.3 1.9 0.069 13.1 0.2 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF329 PF03884.9 gi|330508840|ref|YP_004385268.1| - 0.012 15.1 1.1 0.79 9.3 1.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) NOB1_Zn_bind PF08772.6 gi|330508840|ref|YP_004385268.1| - 0.017 14.9 0.5 0.018 14.8 0.4 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF2072 PF09845.4 gi|330508840|ref|YP_004385268.1| - 0.021 14.7 0.9 0.021 14.7 0.6 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zinc_ribbon_4 PF13717.1 gi|330508840|ref|YP_004385268.1| - 0.021 14.5 4.1 0.55 9.9 2.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|330508840|ref|YP_004385268.1| - 0.024 14.2 2.5 3.7 7.2 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Spt4 PF06093.8 gi|330508840|ref|YP_004385268.1| - 0.027 14.3 0.3 0.032 14.1 0.2 1.1 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger CpXC PF14353.1 gi|330508840|ref|YP_004385268.1| - 0.03 14.2 1.9 0.42 10.5 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_5 PF13719.1 gi|330508840|ref|YP_004385268.1| - 0.039 13.5 4.5 1 8.9 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|330508840|ref|YP_004385268.1| - 0.046 14.0 1.0 2.5 8.6 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger C1_1 PF00130.17 gi|330508840|ref|YP_004385268.1| - 0.05 13.3 1.1 0.072 12.8 0.8 1.5 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) IBR PF01485.16 gi|330508840|ref|YP_004385268.1| - 0.051 13.4 1.3 0.064 13.1 0.9 1.2 1 0 0 1 1 1 0 IBR domain DZR PF12773.2 gi|330508840|ref|YP_004385268.1| - 0.07 12.9 0.8 0.15 11.9 0.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|330508840|ref|YP_004385268.1| - 0.072 13.0 5.4 0.19 11.7 3.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|330508840|ref|YP_004385268.1| - 0.072 12.8 1.3 1.8 8.3 0.0 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-FCS PF06467.9 gi|330508840|ref|YP_004385268.1| - 0.098 12.3 1.9 0.33 10.6 0.1 2.0 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DUF1272 PF06906.6 gi|330508840|ref|YP_004385268.1| - 0.098 12.5 0.5 0.12 12.2 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-AN1 PF01428.11 gi|330508840|ref|YP_004385268.1| - 0.1 12.5 0.7 0.21 11.4 0.6 1.5 1 1 1 2 2 2 0 AN1-like Zinc finger zf-RING_3 PF14369.1 gi|330508840|ref|YP_004385268.1| - 0.12 12.4 0.7 0.18 11.8 0.5 1.3 1 0 0 1 1 1 0 zinc-finger DUF2197 PF09963.4 gi|330508840|ref|YP_004385268.1| - 0.14 12.1 2.8 1.3 9.0 0.4 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) zf-TFIIB PF13453.1 gi|330508840|ref|YP_004385268.1| - 0.17 11.1 1.6 0.4 9.9 1.1 1.6 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_6 PF14599.1 gi|330508840|ref|YP_004385268.1| - 0.18 11.6 1.3 0.23 11.2 0.9 1.2 1 0 0 1 1 1 0 Zinc-ribbon zf-FPG_IleRS PF06827.9 gi|330508840|ref|YP_004385268.1| - 0.25 11.0 3.5 4.3 7.0 0.2 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C2H2 PF00096.21 gi|330508840|ref|YP_004385268.1| - 0.46 10.9 3.4 7.3 7.1 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|330508840|ref|YP_004385268.1| - 0.5 10.1 6.6 1.9 8.2 4.6 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Desulfoferrod_N PF06397.7 gi|330508840|ref|YP_004385268.1| - 0.51 9.7 5.9 0.28 10.5 0.6 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Cys_rich_KTR PF14205.1 gi|330508840|ref|YP_004385268.1| - 0.62 9.5 4.5 0.39 10.2 0.2 2.0 1 1 1 2 2 2 0 Cysteine-rich KTR zf-HIT PF04438.11 gi|330508840|ref|YP_004385268.1| - 0.65 9.7 5.4 3.1 7.4 0.5 2.1 2 0 0 2 2 2 0 HIT zinc finger Transp_Tc5_C PF04236.10 gi|330508840|ref|YP_004385268.1| - 0.68 10.1 2.9 14 5.9 0.4 2.1 1 1 1 2 2 2 0 Tc5 transposase C-terminal domain A2L_zn_ribbon PF08792.5 gi|330508840|ref|YP_004385268.1| - 1.2 8.7 4.3 3.7 7.1 0.1 2.1 1 1 1 2 2 2 0 A2L zinc ribbon domain Mu-like_Com PF10122.4 gi|330508840|ref|YP_004385268.1| - 1.2 8.2 5.8 5.3 6.1 0.1 2.1 1 1 0 2 2 2 0 Mu-like prophage protein Com PyrI_C PF02748.10 gi|330508840|ref|YP_004385268.1| - 2.8 7.4 5.0 1.3 8.5 0.2 2.0 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF2296 PF10058.4 gi|330508840|ref|YP_004385268.1| - 4.4 7.1 5.5 71 3.2 0.4 2.3 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Pcc1 PF09341.5 gi|330508842|ref|YP_004385270.1| - 3.2e-10 39.8 0.0 3.7e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|330508843|ref|YP_004385271.1| - 1.5e-23 82.5 18.6 1.7e-23 82.4 12.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit Lant_dehyd_C PF04738.8 gi|330508843|ref|YP_004385271.1| - 0.0028 15.9 0.8 0.0032 15.7 0.5 1.0 1 0 0 1 1 1 1 Lantibiotic dehydratase, C terminus FliD_C PF07195.7 gi|330508843|ref|YP_004385271.1| - 0.0097 15.2 3.2 0.015 14.5 2.2 1.2 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus DUF3479 PF11965.3 gi|330508843|ref|YP_004385271.1| - 0.031 14.0 2.7 0.039 13.7 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) Pet127 PF08634.5 gi|330508843|ref|YP_004385271.1| - 0.08 12.0 1.1 0.089 11.9 0.7 1.1 1 0 0 1 1 1 0 Mitochondrial protein Pet127 DegQ PF08181.6 gi|330508843|ref|YP_004385271.1| - 0.086 12.5 0.0 0.086 12.5 0.0 2.4 2 1 1 3 3 2 0 DegQ (SacQ) family DUF4200 PF13863.1 gi|330508843|ref|YP_004385271.1| - 0.16 11.9 14.1 0.53 10.2 3.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Fib_alpha PF08702.5 gi|330508843|ref|YP_004385271.1| - 0.23 11.5 8.8 5.9 7.0 0.6 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family CASP_C PF08172.7 gi|330508843|ref|YP_004385271.1| - 0.26 10.2 4.2 0.3 10.0 2.9 1.0 1 0 0 1 1 1 0 CASP C terminal BLOC1_2 PF10046.4 gi|330508843|ref|YP_004385271.1| - 0.29 11.3 6.4 0.11 12.6 1.0 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3450 PF11932.3 gi|330508843|ref|YP_004385271.1| - 0.31 10.2 11.2 0.13 11.4 2.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Img2 PF05046.9 gi|330508843|ref|YP_004385271.1| - 0.4 10.9 1.8 6.6 7.0 0.0 2.3 1 1 1 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) Gasdermin PF04598.7 gi|330508843|ref|YP_004385271.1| - 0.55 8.9 8.5 0.26 10.0 4.3 1.5 1 1 0 1 1 1 0 Gasdermin family Phage_Mu_F PF04233.9 gi|330508843|ref|YP_004385271.1| - 0.69 10.4 5.6 8.4 6.9 0.6 2.0 1 1 1 2 2 2 0 Phage Mu protein F like protein DUF3584 PF12128.3 gi|330508843|ref|YP_004385271.1| - 0.8 6.9 12.3 1.4 6.1 8.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Phage_GP20 PF06810.6 gi|330508843|ref|YP_004385271.1| - 1.1 8.7 16.6 1.3 8.4 3.6 2.1 1 1 1 2 2 2 0 Phage minor structural protein GP20 Baculo_PEP_C PF04513.7 gi|330508843|ref|YP_004385271.1| - 1.4 8.7 9.6 5.3 6.8 3.3 2.1 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Cortex-I_coil PF09304.5 gi|330508843|ref|YP_004385271.1| - 1.6 8.8 16.6 3.5 7.7 5.2 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil TetR PF13972.1 gi|330508843|ref|YP_004385271.1| - 1.8 8.0 8.4 6.5 6.1 1.9 2.2 2 0 0 2 2 2 0 Bacterial transcriptional repressor HAUS-augmin3 PF14932.1 gi|330508843|ref|YP_004385271.1| - 2 7.5 12.5 1 8.4 0.6 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Laminin_II PF06009.7 gi|330508843|ref|YP_004385271.1| - 2.1 8.0 8.1 1.5 8.5 3.0 1.9 1 1 1 2 2 2 0 Laminin Domain II WXG100 PF06013.7 gi|330508843|ref|YP_004385271.1| - 3.6 7.6 12.8 3.7 7.6 0.5 2.3 2 0 0 2 2 2 0 Proteins of 100 residues with WXG V_ATPase_I PF01496.14 gi|330508843|ref|YP_004385271.1| - 4.1 5.1 6.8 5.8 4.6 4.7 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Nsp1_C PF05064.8 gi|330508843|ref|YP_004385271.1| - 4.2 7.0 10.5 6.4 6.4 0.5 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF2098 PF09871.4 gi|330508843|ref|YP_004385271.1| - 4.8 7.1 5.7 4.2 7.3 2.3 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2098) APG6 PF04111.7 gi|330508843|ref|YP_004385271.1| - 5.3 5.9 10.9 7.3 5.5 7.5 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Syntaxin PF00804.20 gi|330508843|ref|YP_004385271.1| - 5.5 7.2 12.7 3.1e+02 1.5 8.8 2.4 1 1 0 1 1 1 0 Syntaxin Mnd1 PF03962.10 gi|330508843|ref|YP_004385271.1| - 7 6.2 11.0 29 4.2 7.6 1.8 1 1 0 1 1 1 0 Mnd1 family DUF972 PF06156.8 gi|330508843|ref|YP_004385271.1| - 7.3 6.9 10.7 2.4e+02 2.0 7.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF972) CorA PF01544.13 gi|330508843|ref|YP_004385271.1| - 8.4 5.3 7.2 21 4.0 5.0 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2203 PF09969.4 gi|330508843|ref|YP_004385271.1| - 9.7 6.4 8.5 7.7 6.7 1.4 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) RNA_bind_2 PF10133.4 gi|330508844|ref|YP_004385272.1| - 7.5e-20 70.7 1.7 7.9e-20 70.6 1.2 1.0 1 0 0 1 1 1 1 Predicted RNA-binding protein DS PF01916.12 gi|330508846|ref|YP_004385274.1| - 1.1e-66 224.9 0.0 1.3e-66 224.7 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase OrfB_Zn_ribbon PF07282.6 gi|330508847|ref|YP_004385275.1| - 7.4e-20 70.3 1.2 4.4e-19 67.9 0.1 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330508847|ref|YP_004385275.1| - 3.3e-13 49.5 0.0 4.6e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 Probable transposase DUF334 PF03904.8 gi|330508847|ref|YP_004385275.1| - 0.024 13.9 0.7 0.11 11.7 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF334) Orn_Arg_deC_N PF02784.11 gi|330508848|ref|YP_004385276.1| - 7.1e-49 166.2 0.0 1e-48 165.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|330508848|ref|YP_004385276.1| - 1.6e-26 92.3 0.0 2.9e-26 91.4 0.0 1.5 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TPP_enzyme_C PF02775.16 gi|330508850|ref|YP_004385278.1| - 2.1e-09 37.1 0.2 8e-09 35.2 0.1 2.0 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transket_pyr PF02779.19 gi|330508850|ref|YP_004385278.1| - 0.044 13.2 0.0 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Transketolase, pyrimidine binding domain POR_N PF01855.14 gi|330508850|ref|YP_004385278.1| - 0.049 13.1 0.1 0.72 9.3 0.1 2.1 1 1 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DUF1743 PF08489.6 gi|330508851|ref|YP_004385279.1| - 1.1e-24 86.4 0.0 1.6e-23 82.7 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF1743) PemK PF02452.12 gi|330508853|ref|YP_004385281.1| - 3.6e-08 33.6 0.0 4e-08 33.4 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein TruD PF01142.13 gi|330508854|ref|YP_004385282.1| - 1.3e-106 356.4 0.0 1.4e-106 356.3 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.11 gi|330508855|ref|YP_004385283.1| - 2.2e-41 140.1 0.1 2.4e-41 140.0 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Toprim_4 PF13662.1 gi|330508856|ref|YP_004385284.1| - 4.6e-09 36.1 0.4 4.6e-09 36.1 0.3 2.4 3 2 0 3 3 3 1 Toprim domain Toprim PF01751.17 gi|330508856|ref|YP_004385284.1| - 6.9e-05 22.7 0.8 0.0012 18.7 0.1 3.1 2 2 1 3 3 3 1 Toprim domain NMD3 PF04981.8 gi|330508857|ref|YP_004385285.1| - 1e-47 162.2 0.0 1.2e-47 162.0 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.2 gi|330508857|ref|YP_004385285.1| - 0.001 18.8 4.3 0.0019 18.0 1.3 2.5 2 1 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|330508857|ref|YP_004385285.1| - 0.076 12.5 7.1 2.3 7.8 3.9 3.0 2 1 0 2 2 2 0 zinc-ribbon domain Methyltransf_13 PF08421.6 gi|330508857|ref|YP_004385285.1| - 0.51 9.8 3.1 8.1 6.0 0.0 3.0 2 1 1 3 3 3 0 Putative zinc binding domain DUF2387 PF09526.5 gi|330508857|ref|YP_004385285.1| - 4.9 7.1 6.6 0.65 9.9 0.1 2.6 3 0 0 3 3 3 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|330508857|ref|YP_004385285.1| - 6 6.2 10.3 28 4.0 4.0 3.2 3 1 0 3 3 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|330508857|ref|YP_004385285.1| - 8.2 6.0 7.8 4 7.0 0.1 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF424 PF04242.8 gi|330508858|ref|YP_004385286.1| - 4e-24 84.4 0.0 5.4e-24 84.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Oxidored_q6 PF01058.17 gi|330508858|ref|YP_004385286.1| - 0.045 13.3 0.0 0.055 13.0 0.0 1.1 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase, 20 Kd subunit MCM PF00493.18 gi|330508859|ref|YP_004385287.1| - 3.4e-132 440.2 0.0 4.4e-132 439.9 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|330508859|ref|YP_004385287.1| - 2.8e-15 56.8 0.8 1.9e-14 54.2 0.0 2.8 4 0 0 4 4 4 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|330508859|ref|YP_004385287.1| - 7.5e-09 35.0 0.1 1.6e-06 27.4 0.0 2.3 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|330508859|ref|YP_004385287.1| - 2.4e-06 27.3 0.0 6.4e-06 25.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|330508859|ref|YP_004385287.1| - 0.00047 19.7 0.0 0.0016 18.0 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|330508859|ref|YP_004385287.1| - 0.0013 18.2 0.0 0.014 14.8 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|330508859|ref|YP_004385287.1| - 0.098 12.8 0.1 0.35 11.0 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NfeD PF01957.13 gi|330508860|ref|YP_004385288.1| - 1.4e-26 93.3 3.2 1.4e-26 93.3 2.2 2.7 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding Antimicrobial10 PF08105.6 gi|330508860|ref|YP_004385288.1| - 0.19 11.3 1.0 0.5 10.0 0.7 1.8 1 0 0 1 1 1 0 Metchnikowin family Band_7 PF01145.20 gi|330508861|ref|YP_004385289.1| - 2.4e-37 128.5 2.2 4e-37 127.8 1.5 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|330508861|ref|YP_004385289.1| - 3.8e-06 26.5 0.0 6.4e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 SPFH domain-Band 7 family Ribosomal_S27 PF01599.14 gi|330508862|ref|YP_004385290.1| - 4.3e-18 64.8 2.2 5.5e-18 64.5 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.14 gi|330508862|ref|YP_004385290.1| - 0.0015 18.2 2.2 0.0022 17.7 1.5 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|330508862|ref|YP_004385290.1| - 0.0023 17.7 0.7 0.0029 17.3 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF2082 PF09855.4 gi|330508862|ref|YP_004385290.1| - 0.0052 16.6 1.0 0.34 10.7 0.2 2.3 2 0 0 2 2 2 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) IBR PF01485.16 gi|330508862|ref|YP_004385290.1| - 0.011 15.5 0.1 0.012 15.4 0.1 1.1 1 0 0 1 1 1 0 IBR domain GCC2_GCC3 PF07699.8 gi|330508862|ref|YP_004385290.1| - 0.012 15.1 1.5 0.017 14.6 1.1 1.2 1 0 0 1 1 1 0 GCC2 and GCC3 TF_Zn_Ribbon PF08271.7 gi|330508862|ref|YP_004385290.1| - 0.018 14.3 2.7 0.028 13.7 1.8 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding DUF1451 PF07295.6 gi|330508862|ref|YP_004385290.1| - 0.027 14.2 0.6 0.027 14.2 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) A2L_zn_ribbon PF08792.5 gi|330508862|ref|YP_004385290.1| - 0.034 13.6 2.4 0.1 12.1 1.6 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|330508862|ref|YP_004385290.1| - 0.066 12.9 1.6 0.16 11.6 1.1 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit GFA PF04828.9 gi|330508862|ref|YP_004385290.1| - 0.066 13.1 1.4 0.27 11.2 0.0 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HypA PF01155.14 gi|330508862|ref|YP_004385290.1| - 0.079 12.6 0.3 0.097 12.3 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-NADH-PPase PF09297.6 gi|330508862|ref|YP_004385290.1| - 0.22 11.0 5.2 0.5 9.9 3.6 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF1936 PF09151.5 gi|330508862|ref|YP_004385290.1| - 0.23 10.9 0.2 0.23 10.9 0.1 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) Nudix_N_2 PF14803.1 gi|330508862|ref|YP_004385290.1| - 0.27 10.9 5.9 3.1 7.5 3.8 2.1 1 1 1 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|330508862|ref|YP_004385290.1| - 0.35 10.9 4.5 0.42 10.6 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|330508862|ref|YP_004385290.1| - 0.49 10.0 2.6 0.77 9.4 1.8 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|330508862|ref|YP_004385290.1| - 0.56 9.4 7.5 3.6 6.9 5.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|330508862|ref|YP_004385290.1| - 0.57 10.0 5.5 7.7 6.4 4.0 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|330508862|ref|YP_004385290.1| - 0.68 9.9 3.5 0.56 10.2 0.3 1.9 1 1 1 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|330508862|ref|YP_004385290.1| - 1.3 9.0 4.6 7.3 6.6 0.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|330508862|ref|YP_004385290.1| - 1.5 8.6 4.9 19 5.1 3.4 2.1 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|330508862|ref|YP_004385290.1| - 3.7 7.1 8.6 2.9 7.4 0.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_S24e PF01282.14 gi|330508863|ref|YP_004385291.1| - 1.4e-25 88.8 0.9 1.7e-25 88.5 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF1198 PF06711.6 gi|330508863|ref|YP_004385291.1| - 0.015 15.1 0.0 0.018 14.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1198) RPW8 PF05659.6 gi|330508863|ref|YP_004385291.1| - 0.061 12.8 0.1 0.076 12.5 0.1 1.1 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF359 PF04019.7 gi|330508864|ref|YP_004385292.1| - 1.3e-39 134.2 0.1 1.8e-39 133.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) VRR_NUC PF08774.6 gi|330508864|ref|YP_004385292.1| - 0.0067 16.4 0.0 0.0097 15.9 0.0 1.4 1 0 0 1 1 1 1 VRR-NUC domain E3_UbLigase_EDD PF11547.3 gi|330508864|ref|YP_004385292.1| - 0.13 11.8 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 E3 ubiquitin ligase EDD HEM4 PF02602.10 gi|330508864|ref|YP_004385292.1| - 0.13 11.4 0.1 0.65 9.2 0.0 1.9 1 1 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Spt4 PF06093.8 gi|330508865|ref|YP_004385293.1| - 2.1e-14 53.1 0.2 2.6e-14 52.8 0.1 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.10 gi|330508865|ref|YP_004385293.1| - 0.0034 16.7 2.9 0.0046 16.3 2.0 1.2 1 0 0 1 1 1 1 RecR protein Laminin_EGF PF00053.19 gi|330508865|ref|YP_004385293.1| - 0.04 13.8 0.5 0.047 13.6 0.4 1.1 1 0 0 1 1 1 0 Laminin EGF-like (Domains III and V) zf-C3HC4_3 PF13920.1 gi|330508865|ref|YP_004385293.1| - 0.052 13.2 2.6 0.065 12.9 1.8 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) SHS2_Rpb7-N PF03876.12 gi|330508866|ref|YP_004385294.1| - 1.1e-18 67.1 0.0 1.7e-18 66.4 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|330508866|ref|YP_004385294.1| - 6e-13 48.6 0.2 1.4e-12 47.4 0.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|330508866|ref|YP_004385294.1| - 0.0017 18.5 0.2 0.0048 17.0 0.2 1.7 1 1 0 1 1 1 1 RNA polymerase III subunit Rpc25 Fcf1 PF04900.7 gi|330508867|ref|YP_004385295.1| - 3e-07 30.4 0.0 4e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN PF01850.16 gi|330508867|ref|YP_004385295.1| - 0.0083 16.4 0.0 0.16 12.3 0.0 2.0 1 1 0 1 1 1 1 PIN domain GTP_EFTU PF00009.22 gi|330508868|ref|YP_004385296.1| - 7e-43 146.2 0.0 1.2e-42 145.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|330508868|ref|YP_004385296.1| - 1.1e-30 105.5 0.2 2.7e-30 104.2 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|330508868|ref|YP_004385296.1| - 5e-07 29.7 0.7 1.6e-06 28.0 0.5 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|330508868|ref|YP_004385296.1| - 0.004 17.0 0.0 0.0088 15.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Nop10p PF04135.7 gi|330508868|ref|YP_004385296.1| - 0.013 15.2 0.1 0.026 14.2 0.1 1.5 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family cobW PF02492.14 gi|330508868|ref|YP_004385296.1| - 0.036 13.5 0.1 0.56 9.6 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|330508868|ref|YP_004385296.1| - 0.043 13.3 1.2 0.81 9.1 0.0 2.6 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation PolC_DP2 PF03833.8 gi|330508868|ref|YP_004385296.1| - 0.085 10.5 0.1 0.11 10.1 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc_ribbon_2 PF13240.1 gi|330508868|ref|YP_004385296.1| - 0.82 9.2 6.9 1.1 8.8 0.4 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Inhibitor_I42 PF09394.5 gi|330508869|ref|YP_004385297.1| - 3.5e-23 81.7 0.0 6.6e-23 80.8 0.0 1.5 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 NosD PF05048.8 gi|330508869|ref|YP_004385297.1| - 5.8e-21 74.7 0.4 1.1e-20 73.8 0.2 1.4 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) AIRS PF00586.19 gi|330508870|ref|YP_004385298.1| - 7.3e-21 74.2 0.2 1.3e-20 73.4 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|330508870|ref|YP_004385298.1| - 3.5e-09 36.8 0.2 5.7e-09 36.1 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain OrfB_Zn_ribbon PF07282.6 gi|330508871|ref|YP_004385299.1| - 9.1e-25 86.1 0.1 1.5e-24 85.4 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|330508871|ref|YP_004385299.1| - 0.0026 17.5 0.4 0.006 16.3 0.3 1.6 1 1 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|330508871|ref|YP_004385299.1| - 0.0084 15.4 0.5 0.17 11.2 0.0 2.2 1 1 1 2 2 2 1 TFIIB zinc-binding FYVE PF01363.16 gi|330508871|ref|YP_004385299.1| - 0.1 12.4 0.9 0.12 12.2 0.1 1.5 2 0 0 2 2 2 0 FYVE zinc finger RecR PF02132.10 gi|330508871|ref|YP_004385299.1| - 0.2 11.1 3.8 3.7 7.0 0.3 2.7 2 1 1 3 3 3 0 RecR protein zf-ribbon_3 PF13248.1 gi|330508871|ref|YP_004385299.1| - 0.2 10.9 1.1 0.84 8.9 0.8 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|330508871|ref|YP_004385299.1| - 0.61 9.6 2.7 20 4.8 2.0 2.4 1 1 1 2 2 2 0 zinc-ribbon domain HTH_OrfB_IS605 PF12323.3 gi|330508872|ref|YP_004385300.1| - 2.3e-20 71.6 2.5 3.8e-20 70.9 1.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_IS605 PF01385.14 gi|330508872|ref|YP_004385300.1| - 4.1e-15 55.7 0.5 1.9e-06 27.4 0.0 2.8 2 1 1 3 3 3 2 Probable transposase MIP PF00230.15 gi|330508873|ref|YP_004385301.1| - 2.1e-48 164.7 18.1 2.4e-48 164.5 12.6 1.0 1 0 0 1 1 1 1 Major intrinsic protein DUF2180 PF09947.4 gi|330508874|ref|YP_004385302.1| - 1.7e-36 123.8 4.3 1.8e-36 123.6 3.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.16 gi|330508874|ref|YP_004385302.1| - 0.019 14.8 0.6 0.025 14.4 0.4 1.3 1 0 0 1 1 1 0 FYVE zinc finger Tnp_zf-ribbon_2 PF13842.1 gi|330508874|ref|YP_004385302.1| - 0.13 12.7 4.2 0.64 10.4 0.3 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Prok-RING_1 PF14446.1 gi|330508874|ref|YP_004385302.1| - 0.18 11.5 6.9 4.2 7.1 0.0 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Transp_Tc5_C PF04236.10 gi|330508874|ref|YP_004385302.1| - 7.3 6.8 6.3 1.1 9.5 1.6 1.8 2 1 0 2 2 2 0 Tc5 transposase C-terminal domain DUF2193 PF09959.4 gi|330508875|ref|YP_004385303.1| - 3.1e-290 962.5 3.1 3.5e-290 962.3 2.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) Thioredoxin_3 PF13192.1 gi|330508876|ref|YP_004385304.1| - 1.1e-25 89.2 0.8 1.2e-25 89.0 0.5 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|330508876|ref|YP_004385304.1| - 0.001 19.0 0.1 0.0021 18.0 0.1 1.6 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.15 gi|330508876|ref|YP_004385304.1| - 0.0044 16.6 0.0 0.0044 16.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.1 gi|330508876|ref|YP_004385304.1| - 0.0045 17.0 0.1 0.011 15.7 0.0 1.5 1 1 1 2 2 2 1 Thioredoxin SapB_1 PF05184.10 gi|330508876|ref|YP_004385304.1| - 0.011 15.5 0.7 0.016 15.0 0.1 1.6 2 0 0 2 2 2 0 Saposin-like type B, region 1 ArsD PF06953.6 gi|330508876|ref|YP_004385304.1| - 0.035 14.2 0.0 0.059 13.5 0.0 1.3 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Methyltransf_2 PF00891.13 gi|330508876|ref|YP_004385304.1| - 0.07 12.3 0.1 0.07 12.3 0.1 1.1 1 0 0 1 1 1 0 O-methyltransferase F420_ligase PF01996.11 gi|330508876|ref|YP_004385304.1| - 0.1 11.6 0.1 0.12 11.4 0.1 1.0 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase DGC PF08859.6 gi|330508877|ref|YP_004385305.1| - 1.2e-29 102.4 7.1 1.4e-29 102.1 4.9 1.1 1 0 0 1 1 1 1 DGC domain Rhodanese PF00581.15 gi|330508878|ref|YP_004385306.1| - 1.5e-22 80.0 0.0 2.7e-12 47.0 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|330508879|ref|YP_004385307.1| - 4.2e-22 78.6 0.0 5e-12 46.1 0.0 2.5 2 0 0 2 2 2 2 Rhodanese-like domain Metallophos_2 PF12850.2 gi|330508881|ref|YP_004385309.1| - 3.7e-23 82.0 0.0 4.9e-23 81.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|330508881|ref|YP_004385309.1| - 8.3e-09 35.1 0.1 4.8e-07 29.3 0.1 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase SIS PF01380.17 gi|330508882|ref|YP_004385310.1| - 7.6e-06 25.5 0.0 0.037 13.6 0.0 3.1 2 1 0 2 2 2 2 SIS domain OrfB_IS605 PF01385.14 gi|330508883|ref|YP_004385311.1| - 1.8e-09 37.3 1.9 2.6e-09 36.8 1.3 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|330508883|ref|YP_004385311.1| - 4.4e-06 26.2 0.0 1.6e-05 24.4 0.0 2.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF1297 PF06973.7 gi|330508884|ref|YP_004385312.1| - 1.1e-64 217.2 0.1 1.5e-64 216.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|330508884|ref|YP_004385312.1| - 2.8e-42 143.3 0.0 4.8e-42 142.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.9 gi|330508884|ref|YP_004385312.1| - 3.4e-06 27.0 0.0 8.9e-06 25.6 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|330508884|ref|YP_004385312.1| - 3.7e-06 26.8 0.0 0.011 15.5 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|330508884|ref|YP_004385312.1| - 0.00065 19.0 0.0 0.0017 17.7 0.0 1.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|330508884|ref|YP_004385312.1| - 0.012 15.0 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|330508884|ref|YP_004385312.1| - 0.091 12.1 0.5 0.32 10.3 0.0 1.9 2 0 0 2 2 2 0 ATP-grasp domain DUF448 PF04296.8 gi|330508884|ref|YP_004385312.1| - 0.12 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF448) TTL PF03133.10 gi|330508884|ref|YP_004385312.1| - 0.15 10.9 0.0 0.26 10.1 0.0 1.2 1 0 0 1 1 1 0 Tubulin-tyrosine ligase family EamA PF00892.15 gi|330508885|ref|YP_004385313.1| - 2.2e-12 47.1 11.4 2.2e-12 47.1 7.9 2.6 3 0 0 3 3 3 2 EamA-like transporter family TPT PF03151.11 gi|330508885|ref|YP_004385313.1| - 0.0079 15.8 8.9 0.0079 15.8 6.1 3.1 2 2 0 2 2 2 1 Triose-phosphate Transporter family Acyl_transf_3 PF01757.17 gi|330508886|ref|YP_004385314.1| - 0.0026 16.6 1.2 0.003 16.4 0.8 1.0 1 0 0 1 1 1 1 Acyltransferase family DUF2157 PF09925.4 gi|330508886|ref|YP_004385314.1| - 0.01 15.4 0.1 0.014 14.9 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) UPF0104 PF03706.8 gi|330508886|ref|YP_004385314.1| - 0.017 14.4 1.6 0.021 14.0 1.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) ER_lumen_recept PF00810.13 gi|330508886|ref|YP_004385314.1| - 0.022 15.2 3.8 0.14 12.6 0.3 2.1 1 1 1 2 2 2 0 ER lumen protein retaining receptor DUF4271 PF14093.1 gi|330508886|ref|YP_004385314.1| - 0.065 12.9 6.8 0.12 12.0 2.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4271) DUF4293 PF14126.1 gi|330508886|ref|YP_004385314.1| - 0.066 13.1 4.0 0.15 11.9 2.7 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4293) CD20 PF04103.10 gi|330508886|ref|YP_004385314.1| - 0.069 13.0 2.0 0.082 12.8 0.6 1.6 1 1 1 2 2 2 0 CD20-like family PsbN PF02468.10 gi|330508886|ref|YP_004385314.1| - 1.6 8.3 9.3 3.4 7.3 0.1 3.3 3 0 0 3 3 3 0 Photosystem II reaction centre N protein (psbN) Col_cuticle_N PF01484.12 gi|330508886|ref|YP_004385314.1| - 2 8.1 7.4 9.3 6.0 0.4 2.6 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain DUF3671 PF12420.3 gi|330508886|ref|YP_004385314.1| - 7 6.6 8.0 5.9 6.9 2.2 2.1 1 1 1 2 2 2 0 Protein of unknown function SDH_sah PF01972.11 gi|330508887|ref|YP_004385315.1| - 1.2e-13 50.4 0.0 1e-10 40.8 0.0 2.2 2 0 0 2 2 2 2 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|330508887|ref|YP_004385315.1| - 3.5e-06 26.8 0.0 2.1e-05 24.3 0.0 2.1 2 0 0 2 2 2 1 Clp protease HTH_AraC PF00165.18 gi|330508887|ref|YP_004385315.1| - 0.00067 19.4 0.0 0.0017 18.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix proteins, AraC family DUF4482 PF14818.1 gi|330508887|ref|YP_004385315.1| - 0.016 15.8 0.4 0.032 14.9 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4482) Cortex-I_coil PF09304.5 gi|330508887|ref|YP_004385315.1| - 0.02 14.9 0.2 0.049 13.6 0.1 1.6 1 0 0 1 1 1 0 Cortexillin I, coiled coil RHH_1 PF01402.16 gi|330508888|ref|YP_004385316.1| - 9.9e-05 22.0 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|330508888|ref|YP_004385316.1| - 0.072 12.8 0.1 0.27 10.9 0.0 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix domain DDE_Tnp_1 PF01609.16 gi|330508889|ref|YP_004385317.1| - 1.2e-18 67.4 0.1 2.4e-18 66.4 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain SWIM PF04434.12 gi|330508889|ref|YP_004385317.1| - 1.1e-05 24.8 0.4 2.2e-05 23.8 0.3 1.4 1 0 0 1 1 1 1 SWIM zinc finger DDE_Tnp_1_6 PF13751.1 gi|330508889|ref|YP_004385317.1| - 0.0032 17.4 0.1 0.0073 16.3 0.1 1.6 1 0 0 1 1 1 1 Transposase DDE domain Lactamase_B_2 PF12706.2 gi|330508890|ref|YP_004385318.1| - 4.1e-31 108.0 0.0 6.1e-31 107.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|330508890|ref|YP_004385318.1| - 1e-18 67.7 0.1 8.9e-18 64.6 0.0 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|330508890|ref|YP_004385318.1| - 6e-06 25.6 0.0 1.2e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease Spore_coat_CotO PF14153.1 gi|330508891|ref|YP_004385319.1| - 0.25 10.7 2.7 0.19 11.1 0.6 1.7 2 0 0 2 2 2 0 Spore coat protein CotO Response_reg PF00072.19 gi|330508892|ref|YP_004385320.1| - 5.1e-40 135.9 0.5 8.3e-29 99.8 0.1 2.5 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.21 gi|330508892|ref|YP_004385320.1| - 2e-29 101.5 0.2 4.5e-29 100.3 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|330508892|ref|YP_004385320.1| - 7.2e-20 70.7 0.4 3.2e-19 68.6 0.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain DUF2098 PF09871.4 gi|330508892|ref|YP_004385320.1| - 0.01 15.7 1.6 0.022 14.6 1.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) HATPase_c_3 PF13589.1 gi|330508892|ref|YP_004385320.1| - 0.053 13.1 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hist_deacetyl PF00850.14 gi|330508893|ref|YP_004385321.1| - 2.4e-37 128.8 0.2 4e-28 98.6 0.0 3.0 1 1 1 2 2 2 2 Histone deacetylase domain Transposase_20 PF02371.11 gi|330508896|ref|YP_004385324.1| - 1.2e-25 89.4 0.1 2.1e-25 88.6 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|330508896|ref|YP_004385324.1| - 1.8e-24 86.0 0.0 2.9e-24 85.3 0.0 1.3 1 0 0 1 1 1 1 Transposase Lectin_N PF03954.9 gi|330508896|ref|YP_004385324.1| - 0.028 13.8 0.0 0.35 10.2 0.0 2.2 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain OrfB_IS605 PF01385.14 gi|330508897|ref|YP_004385325.1| - 9e-40 136.4 0.1 1.4e-39 135.8 0.0 1.3 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|330508897|ref|YP_004385325.1| - 4.4e-10 38.7 0.6 2.1e-09 36.5 0.8 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain DDE_3 PF13358.1 gi|330508898|ref|YP_004385326.1| - 2.6e-23 82.3 0.0 3.2e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease rve_3 PF13683.1 gi|330508898|ref|YP_004385326.1| - 0.014 14.8 0.4 0.14 11.6 0.0 2.4 3 0 0 3 3 3 0 Integrase core domain rve_2 PF13333.1 gi|330508898|ref|YP_004385326.1| - 0.024 14.6 0.0 0.051 13.6 0.0 1.6 1 0 0 1 1 1 0 Integrase core domain OrfB_Zn_ribbon PF07282.6 gi|330508899|ref|YP_004385327.1| - 1.2e-23 82.5 0.1 1.3e-23 82.4 0.1 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|330508899|ref|YP_004385327.1| - 0.004 16.4 1.3 0.044 13.1 0.0 2.1 1 1 1 2 2 2 1 TFIIB zinc-binding DZR PF12773.2 gi|330508899|ref|YP_004385327.1| - 0.0046 16.7 0.1 0.0064 16.2 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon FYVE PF01363.16 gi|330508899|ref|YP_004385327.1| - 0.0061 16.4 0.2 0.0073 16.1 0.1 1.1 1 0 0 1 1 1 1 FYVE zinc finger RecR PF02132.10 gi|330508899|ref|YP_004385327.1| - 0.022 14.1 1.9 2.4 7.6 0.1 2.1 1 1 1 2 2 2 0 RecR protein YhfH PF14149.1 gi|330508899|ref|YP_004385327.1| - 0.044 13.5 0.3 2.1 8.2 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein C1_1 PF00130.17 gi|330508899|ref|YP_004385327.1| - 0.056 13.1 0.2 0.077 12.7 0.1 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Ribosomal_L37e PF01907.14 gi|330508899|ref|YP_004385327.1| - 0.064 13.0 0.2 0.064 13.0 0.1 1.7 2 0 0 2 2 2 0 Ribosomal protein L37e zf-ribbon_3 PF13248.1 gi|330508899|ref|YP_004385327.1| - 0.11 11.7 0.1 0.18 11.0 0.1 1.4 1 1 0 1 1 1 0 zinc-ribbon domain TFX_C PF14601.1 gi|330508900|ref|YP_004385328.1| - 6.3e-21 73.9 0.0 9.1e-21 73.4 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|330508900|ref|YP_004385328.1| - 1.9e-07 30.2 0.7 6e-07 28.6 0.2 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|330508900|ref|YP_004385328.1| - 3.3e-05 23.4 0.8 0.00045 19.7 0.1 2.6 2 1 1 3 3 3 1 Homeodomain-like domain GerE PF00196.14 gi|330508900|ref|YP_004385328.1| - 4.1e-05 22.8 0.1 0.00011 21.4 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_31 PF13560.1 gi|330508900|ref|YP_004385328.1| - 0.00013 22.0 0.5 0.00031 20.8 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|330508900|ref|YP_004385328.1| - 0.0002 21.0 0.5 0.00055 19.6 0.1 2.0 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|330508900|ref|YP_004385328.1| - 0.00079 19.2 0.2 0.0021 17.8 0.1 1.9 2 0 0 2 2 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|330508900|ref|YP_004385328.1| - 0.0017 18.3 0.1 0.014 15.4 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|330508900|ref|YP_004385328.1| - 0.0019 17.7 0.1 0.0093 15.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|330508900|ref|YP_004385328.1| - 0.0023 17.3 0.1 0.0085 15.5 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|330508900|ref|YP_004385328.1| - 0.0035 16.9 0.1 0.14 11.8 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_7 PF02796.10 gi|330508900|ref|YP_004385328.1| - 0.032 14.1 0.0 0.089 12.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|330508900|ref|YP_004385328.1| - 0.1 12.6 0.3 0.41 10.6 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain DUF2481 PF10654.4 gi|330508900|ref|YP_004385328.1| - 0.1 12.2 0.1 0.32 10.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2481) Cation_ATPase_N PF00690.21 gi|330508900|ref|YP_004385328.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Cation transporter/ATPase, N-terminus Thi4 PF01946.12 gi|330508901|ref|YP_004385329.1| - 1.4e-82 276.2 4.7 1.7e-82 275.9 3.2 1.1 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|330508901|ref|YP_004385329.1| - 1e-05 24.8 1.6 1.5e-05 24.2 1.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|330508901|ref|YP_004385329.1| - 3.2e-05 23.8 0.1 3.2e-05 23.8 0.1 2.2 2 1 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|330508901|ref|YP_004385329.1| - 0.00083 19.2 0.3 0.001 18.9 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|330508901|ref|YP_004385329.1| - 0.00086 18.3 4.4 0.13 11.1 0.7 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|330508901|ref|YP_004385329.1| - 0.0089 14.5 3.4 0.036 12.5 0.7 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|330508901|ref|YP_004385329.1| - 0.023 13.7 0.1 0.035 13.1 0.1 1.5 1 1 0 1 1 1 0 FAD binding domain FAD_binding_2 PF00890.19 gi|330508901|ref|YP_004385329.1| - 0.039 12.8 5.1 0.06 12.1 0.4 2.2 1 1 1 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.7 gi|330508901|ref|YP_004385329.1| - 0.063 12.1 2.2 0.81 8.5 0.2 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein K_oxygenase PF13434.1 gi|330508901|ref|YP_004385329.1| - 0.084 11.7 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|330508901|ref|YP_004385329.1| - 0.086 12.6 0.1 0.23 11.2 0.1 1.8 1 0 0 1 1 1 0 FAD-NAD(P)-binding Epimerase PF01370.16 gi|330508902|ref|YP_004385330.1| - 7.9e-45 153.1 0.0 9.4e-45 152.8 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|330508902|ref|YP_004385330.1| - 3.1e-18 65.7 0.0 2.4e-17 62.7 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|330508902|ref|YP_004385330.1| - 3.7e-18 65.2 0.0 4.8e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|330508902|ref|YP_004385330.1| - 4.6e-16 58.5 0.0 5.9e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|330508902|ref|YP_004385330.1| - 5.1e-14 51.7 0.0 1.6e-08 33.8 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|330508902|ref|YP_004385330.1| - 2.6e-08 34.0 0.0 5.4e-08 33.0 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|330508902|ref|YP_004385330.1| - 0.00061 19.7 0.1 0.0022 17.9 0.0 1.9 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|330508902|ref|YP_004385330.1| - 0.022 13.9 0.0 0.14 11.3 0.0 2.0 2 0 0 2 2 2 0 NmrA-like family KR PF08659.5 gi|330508902|ref|YP_004385330.1| - 0.027 14.1 0.2 4.5 6.9 0.0 2.3 2 0 0 2 2 2 0 KR domain Rhodanese PF00581.15 gi|330508903|ref|YP_004385331.1| - 9.1e-22 77.5 0.0 7.8e-15 55.2 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain DeoC PF01791.4 gi|330508904|ref|YP_004385332.1| - 9.9e-55 185.3 0.2 1.2e-54 185.1 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase TMP-TENI PF02581.12 gi|330508904|ref|YP_004385332.1| - 0.0059 15.7 0.0 0.93 8.5 0.0 2.5 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI OMPdecase PF00215.19 gi|330508904|ref|YP_004385332.1| - 0.016 14.5 0.1 0.052 12.9 0.1 1.9 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF3459 PF11941.3 gi|330508904|ref|YP_004385332.1| - 0.026 14.6 0.1 0.074 13.1 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3459) AP_endonuc_2 PF01261.19 gi|330508904|ref|YP_004385332.1| - 0.075 12.3 0.3 1.6 7.9 0.0 2.3 1 1 0 2 2 2 0 Xylose isomerase-like TIM barrel YadA_head PF05658.9 gi|330508904|ref|YP_004385332.1| - 0.26 11.5 0.4 0.26 11.5 0.3 2.9 4 0 0 4 4 4 0 Head domain of trimeric autotransporter adhesin CARDB PF07705.6 gi|330508905|ref|YP_004385333.1| - 0.0065 16.4 0.0 0.7 9.9 0.0 2.8 2 2 0 2 2 2 1 CARDB NPCBM_assoc PF10633.4 gi|330508905|ref|YP_004385333.1| - 0.012 15.6 0.0 3.1 7.9 0.0 2.9 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|330508905|ref|YP_004385333.1| - 0.016 14.3 0.0 0.041 13.0 0.0 1.7 1 1 0 1 1 1 0 Translocon-associated protein beta (TRAPB) AA_permease_2 PF13520.1 gi|330508906|ref|YP_004385334.1| - 8.4e-47 159.6 48.7 1e-46 159.3 33.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|330508906|ref|YP_004385334.1| - 2.3e-32 112.0 49.7 3.7e-32 111.3 34.4 1.2 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|330508906|ref|YP_004385334.1| - 6.9e-12 44.6 18.5 6.9e-12 44.6 12.8 2.3 1 1 0 2 2 2 1 Spore germination protein Virul_fac_BrkB PF03631.10 gi|330508907|ref|YP_004385335.1| - 3e-46 157.9 18.8 5.3e-46 157.0 13.1 1.4 1 1 0 1 1 1 1 Virulence factor BrkB Nucleos_tra2_N PF01773.15 gi|330508907|ref|YP_004385335.1| - 0.009 16.3 0.4 0.009 16.3 0.3 2.7 4 0 0 4 4 4 1 Na+ dependent nucleoside transporter N-terminus UPF0118 PF01594.11 gi|330508908|ref|YP_004385336.1| - 7.1e-51 173.1 37.2 1.2e-50 172.4 25.8 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF20 LMF1 PF06762.9 gi|330508908|ref|YP_004385336.1| - 1.1 7.9 5.4 1.8 7.2 3.7 1.4 1 0 0 1 1 1 0 Lipase maturation factor Sperm_Ag_HE2 PF05324.8 gi|330508908|ref|YP_004385336.1| - 2.2 8.2 8.9 1.5 8.7 0.1 3.0 3 0 0 3 3 3 0 Sperm antigen HE2 UPF0118 PF01594.11 gi|330508909|ref|YP_004385337.1| - 4.2e-31 108.1 27.4 4.8e-31 107.9 19.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF3176 PF11374.3 gi|330508909|ref|YP_004385337.1| - 0.016 15.0 0.0 0.054 13.3 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3176) NurA PF09376.5 gi|330508911|ref|YP_004385339.1| - 2.1e-12 47.0 0.1 3.8e-12 46.2 0.1 1.4 1 1 0 1 1 1 1 NurA domain Hormone_3 PF00159.13 gi|330508911|ref|YP_004385339.1| - 0.16 11.9 3.0 0.12 12.4 0.7 1.8 2 0 0 2 2 2 0 Pancreatic hormone peptide DUF87 PF01935.12 gi|330508912|ref|YP_004385340.1| - 2.5e-23 83.0 2.7 1.2e-22 80.8 1.8 2.0 1 1 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|330508912|ref|YP_004385340.1| - 1.1e-15 57.8 4.3 1.5e-13 50.8 3.0 2.1 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|330508912|ref|YP_004385340.1| - 0.0042 15.7 2.2 0.12 10.9 0.0 2.9 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|330508912|ref|YP_004385340.1| - 0.02 14.3 0.1 0.045 13.2 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF853 PF05872.7 gi|330508912|ref|YP_004385340.1| - 0.021 13.1 0.1 0.042 12.1 0.0 1.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) DUF552 PF04472.7 gi|330508912|ref|YP_004385340.1| - 0.026 14.4 0.2 0.27 11.2 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF552) RHH_1 PF01402.16 gi|330508912|ref|YP_004385340.1| - 0.055 13.3 0.1 0.25 11.3 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF4325 PF14213.1 gi|330508912|ref|YP_004385340.1| - 0.058 13.0 0.1 0.058 13.0 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4325) Metallophos PF00149.23 gi|330508913|ref|YP_004385341.1| - 4.9e-18 65.2 2.7 1e-17 64.1 1.8 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|330508913|ref|YP_004385341.1| - 8.3e-16 58.2 0.2 1.4e-15 57.4 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|330508913|ref|YP_004385341.1| - 0.00085 18.5 0.1 0.19 10.8 0.0 2.3 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily SbcD_C PF12320.3 gi|330508913|ref|YP_004385341.1| - 0.22 11.5 2.5 0.7 9.9 1.8 1.9 1 1 0 1 1 1 0 Type 5 capsule protein repressor C-terminal domain SMC_N PF02463.14 gi|330508914|ref|YP_004385342.1| - 2.4e-22 79.2 0.3 3.8e-22 78.6 0.2 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|330508914|ref|YP_004385342.1| - 1e-09 38.7 7.0 3e-06 27.4 0.5 2.9 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|330508914|ref|YP_004385342.1| - 7.3e-09 36.2 80.7 40 4.4 55.9 6.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|330508914|ref|YP_004385342.1| - 1.2e-08 34.3 0.0 2.4e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|330508914|ref|YP_004385342.1| - 2.4e-07 30.1 10.2 2.5e-07 30.1 4.6 2.5 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|330508914|ref|YP_004385342.1| - 2.7e-06 27.2 0.0 7.3e-06 25.8 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|330508914|ref|YP_004385342.1| - 0.00017 21.9 4.3 0.00032 21.0 0.1 3.5 2 1 0 2 2 2 1 ABC transporter MukB PF04310.7 gi|330508914|ref|YP_004385342.1| - 0.037 13.3 0.1 0.12 11.6 0.0 1.8 2 0 0 2 2 2 0 MukB N-terminal AAA_19 PF13245.1 gi|330508914|ref|YP_004385342.1| - 0.14 11.9 0.0 0.5 10.1 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain DUF4277 PF14104.1 gi|330508915|ref|YP_004385343.1| - 1.5e-39 134.7 0.0 3.1e-39 133.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|330508915|ref|YP_004385343.1| - 6.3e-09 35.6 0.2 4.9e-08 32.7 0.1 2.1 1 1 0 1 1 1 1 Transposase DDE domain CDC27 PF09507.5 gi|330508915|ref|YP_004385343.1| - 0.037 13.2 0.0 0.052 12.7 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 Laminin_G_3 PF13385.1 gi|330508916|ref|YP_004385344.1| - 9.3e-18 64.9 1.1 2.1e-17 63.8 0.8 1.5 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily DAO PF01266.19 gi|330508917|ref|YP_004385345.1| - 2.1e-10 40.0 0.9 0.00028 19.9 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|330508917|ref|YP_004385345.1| - 2e-09 36.8 1.0 1e-05 24.6 0.2 2.6 2 1 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|330508917|ref|YP_004385345.1| - 9.7e-09 34.7 2.5 0.0003 19.9 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain HI0933_like PF03486.9 gi|330508917|ref|YP_004385345.1| - 4.3e-07 28.7 1.2 1.5e-06 26.9 0.5 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|330508917|ref|YP_004385345.1| - 2.2e-06 27.0 2.5 2.2e-06 27.0 1.7 1.8 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|330508917|ref|YP_004385345.1| - 3.1e-05 23.9 1.1 5.6e-05 23.1 0.4 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|330508917|ref|YP_004385345.1| - 5.5e-05 21.9 0.5 0.21 10.1 0.2 2.7 3 0 0 3 3 3 2 Tryptophan halogenase Thi4 PF01946.12 gi|330508917|ref|YP_004385345.1| - 7.7e-05 21.8 0.2 0.00016 20.8 0.1 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|330508917|ref|YP_004385345.1| - 0.00018 20.5 0.3 0.00022 20.2 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|330508917|ref|YP_004385345.1| - 0.00026 20.9 0.1 0.00026 20.9 0.0 2.3 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|330508917|ref|YP_004385345.1| - 0.0004 19.3 1.4 0.001 18.0 1.0 1.7 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|330508917|ref|YP_004385345.1| - 0.00076 19.6 0.0 0.0019 18.3 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|330508917|ref|YP_004385345.1| - 0.011 15.3 0.7 0.025 14.1 0.1 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|330508917|ref|YP_004385345.1| - 0.028 14.8 0.1 0.23 11.8 0.0 2.4 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase H-K_ATPase_N PF09040.6 gi|330508917|ref|YP_004385345.1| - 0.11 12.6 1.0 0.24 11.5 0.1 2.0 2 0 0 2 2 2 0 Gastric H+/K+-ATPase, N terminal domain Ku PF02735.11 gi|330508919|ref|YP_004385347.1| - 9.1e-24 83.9 0.2 1.4e-23 83.3 0.1 1.3 1 0 0 1 1 1 1 Ku70/Ku80 beta-barrel domain DNA_ligase_A_M PF01068.16 gi|330508920|ref|YP_004385348.1| - 1.4e-30 106.1 0.0 2.1e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.10 gi|330508920|ref|YP_004385348.1| - 6.4e-23 80.9 0.0 1e-22 80.3 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|330508920|ref|YP_004385348.1| - 6.7e-05 22.4 0.3 0.00023 20.7 0.1 2.0 2 1 0 2 2 2 1 DNA ligase OB-like domain mRNA_cap_enzyme PF01331.14 gi|330508920|ref|YP_004385348.1| - 0.00038 20.1 0.0 0.12 12.0 0.0 2.2 2 0 0 2 2 2 2 mRNA capping enzyme, catalytic domain DEDD_Tnp_IS110 PF01548.12 gi|330508921|ref|YP_004385349.1| - 3.2e-25 88.4 0.1 8.7e-25 87.0 0.0 1.8 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.11 gi|330508921|ref|YP_004385349.1| - 1.1e-24 86.3 0.0 2.4e-24 85.2 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family YfkB PF08756.5 gi|330508921|ref|YP_004385349.1| - 0.028 13.9 0.0 0.08 12.5 0.0 1.8 1 0 0 1 1 1 0 YfkB-like domain DEDD_Tnp_IS110 PF01548.12 gi|330508922|ref|YP_004385350.1| - 3.2e-25 88.4 0.1 8.7e-25 87.0 0.0 1.8 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.11 gi|330508922|ref|YP_004385350.1| - 1.1e-24 86.3 0.0 2.4e-24 85.2 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family YfkB PF08756.5 gi|330508922|ref|YP_004385350.1| - 0.028 13.9 0.0 0.08 12.5 0.0 1.8 1 0 0 1 1 1 0 YfkB-like domain DEAD PF00270.24 gi|330508926|ref|YP_004385354.1| - 6.8e-07 28.9 0.0 2.6e-06 27.0 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|330508926|ref|YP_004385354.1| - 2.2e-05 24.3 0.1 8.1e-05 22.5 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|330508926|ref|YP_004385354.1| - 0.0014 17.9 0.0 0.32 10.1 0.0 2.7 3 0 0 3 3 3 2 PhoH-like protein Helicase_C PF00271.26 gi|330508926|ref|YP_004385354.1| - 0.0039 17.0 0.0 0.013 15.3 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Moricin PF06451.6 gi|330508926|ref|YP_004385354.1| - 0.11 11.9 0.1 0.24 10.9 0.1 1.5 1 0 0 1 1 1 0 Moricin Cas_Cas5d PF09704.5 gi|330508927|ref|YP_004385355.1| - 2.1e-06 27.5 0.0 2.8e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DUF694 PF05107.7 gi|330508928|ref|YP_004385356.1| - 5.7e-73 245.4 0.1 7.9e-73 245.0 0.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF694) Cas_TM1802 PF09484.5 gi|330508929|ref|YP_004385357.1| - 1.4e-131 439.9 27.3 1.6e-131 439.7 18.9 1.0 1 0 0 1 1 1 1 CRISPR-associated protein TM1802 (cas_TM1802) Retrotrans_gag PF03732.12 gi|330508929|ref|YP_004385357.1| - 0.061 13.4 2.2 0.071 13.1 0.2 2.1 2 0 0 2 2 2 0 Retrotransposon gag protein DUF1870 PF08965.5 gi|330508929|ref|YP_004385357.1| - 0.68 9.6 4.7 2 8.0 0.0 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF1870) DIX PF00778.12 gi|330508929|ref|YP_004385357.1| - 1.4 8.6 6.7 0.26 11.0 0.3 3.0 4 0 0 4 4 4 0 DIX domain Cas_Cas4 PF01930.12 gi|330508930|ref|YP_004385358.1| - 1.6e-21 76.9 4.3 1.9e-21 76.6 3.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|330508930|ref|YP_004385358.1| - 5e-15 55.5 8.0 1e-13 51.2 1.8 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily TPR_10 PF13374.1 gi|330508930|ref|YP_004385358.1| - 0.041 13.8 0.0 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat Phage_NinH PF06322.6 gi|330508930|ref|YP_004385358.1| - 0.046 13.3 0.1 0.75 9.4 0.0 2.4 2 0 0 2 2 2 0 Phage NinH protein TPR_2 PF07719.12 gi|330508930|ref|YP_004385358.1| - 0.082 12.8 0.1 0.55 10.2 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat CRISPR_Cas2 PF09827.4 gi|330508931|ref|YP_004385359.1| - 5.2e-23 80.9 0.3 6e-23 80.7 0.2 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.11 gi|330508932|ref|YP_004385360.1| - 2.8e-78 262.8 0.0 3.3e-78 262.6 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 RVT_3 PF13456.1 gi|330508932|ref|YP_004385360.1| - 0.092 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Reverse transcriptase-like DUF104 PF01954.11 gi|330508933|ref|YP_004385361.1| - 1.5e-12 47.3 0.1 1.7e-12 47.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Antitoxin-MazE PF04014.13 gi|330508933|ref|YP_004385361.1| - 0.052 13.2 0.8 0.11 12.2 0.3 1.7 2 0 0 2 2 2 0 Antidote-toxin recognition MazE PIN PF01850.16 gi|330508934|ref|YP_004385362.1| - 4e-08 33.6 0.8 4.8e-08 33.3 0.5 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|330508934|ref|YP_004385362.1| - 0.013 16.1 0.1 0.018 15.6 0.0 1.3 1 1 0 1 1 1 0 PIN domain Abhydrolase_5 PF12695.2 gi|330508935|ref|YP_004385363.1| - 1.2e-15 57.4 0.0 4.7e-15 55.6 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|330508935|ref|YP_004385363.1| - 1.7e-14 54.2 0.0 3e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF1100 PF06500.6 gi|330508935|ref|YP_004385363.1| - 8.2e-12 44.4 0.0 1.1e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Peptidase_S9 PF00326.16 gi|330508935|ref|YP_004385363.1| - 9.3e-10 38.0 0.0 2.5e-07 30.1 0.0 2.4 1 1 1 2 2 2 2 Prolyl oligopeptidase family BAAT_C PF08840.6 gi|330508935|ref|YP_004385363.1| - 6.4e-06 26.0 0.0 1.2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S15 PF02129.13 gi|330508935|ref|YP_004385363.1| - 0.0001 21.8 0.0 0.0027 17.1 0.0 2.2 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|330508935|ref|YP_004385363.1| - 0.00018 20.1 0.1 0.00043 18.8 0.0 1.6 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.8 gi|330508935|ref|YP_004385363.1| - 0.0049 16.4 0.0 0.0086 15.6 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhoPQ_related PF10142.4 gi|330508935|ref|YP_004385363.1| - 0.0087 14.5 0.0 0.014 13.8 0.0 1.2 1 0 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein DLH PF01738.13 gi|330508935|ref|YP_004385363.1| - 0.019 14.2 0.0 0.042 13.1 0.0 1.7 1 1 0 1 1 1 0 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|330508935|ref|YP_004385363.1| - 0.023 14.2 0.0 0.36 10.3 0.0 2.4 3 0 0 3 3 3 0 alpha/beta hydrolase fold UPF0227 PF05728.7 gi|330508935|ref|YP_004385363.1| - 0.13 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Dodecin PF07311.7 gi|330508936|ref|YP_004385364.1| - 8e-21 73.8 0.0 9.5e-21 73.6 0.0 1.1 1 0 0 1 1 1 1 Dodecin Molybdopterin PF00384.17 gi|330508937|ref|YP_004385365.1| - 3.1e-89 299.6 0.0 3.8e-89 299.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|330508937|ref|YP_004385365.1| - 9.8e-31 105.8 0.0 2.1e-30 104.7 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|330508937|ref|YP_004385365.1| - 1.1e-16 60.4 0.3 7.5e-16 57.6 0.2 2.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.1 gi|330508937|ref|YP_004385365.1| - 2.1e-16 59.4 0.0 6.3e-16 57.9 0.0 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|330508937|ref|YP_004385365.1| - 1.5e-08 33.7 8.0 0.00081 18.5 0.1 2.9 1 1 1 2 2 2 2 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4 PF00037.22 gi|330508937|ref|YP_004385365.1| - 1.9e-06 27.1 2.4 1.9e-06 27.1 1.6 4.3 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330508937|ref|YP_004385365.1| - 1e-05 25.7 8.1 1e-05 25.7 5.6 4.2 3 1 2 5 5 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508937|ref|YP_004385365.1| - 4e-05 23.3 7.9 4e-05 23.3 5.5 3.7 3 2 1 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330508937|ref|YP_004385365.1| - 5.3e-05 23.1 5.7 5.3e-05 23.1 4.0 3.6 4 1 0 4 4 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330508937|ref|YP_004385365.1| - 8e-05 22.4 3.7 8e-05 22.4 2.6 3.0 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330508937|ref|YP_004385365.1| - 0.00025 21.2 10.9 0.00025 21.2 7.6 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330508937|ref|YP_004385365.1| - 0.0034 17.1 3.7 0.0034 17.1 2.6 4.6 6 0 0 6 6 5 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|330508937|ref|YP_004385365.1| - 0.0043 17.5 6.6 0.0043 17.5 4.6 4.8 6 0 0 6 6 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330508937|ref|YP_004385365.1| - 0.028 15.1 3.8 0.028 15.1 2.7 4.0 4 0 0 4 4 3 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|330508937|ref|YP_004385365.1| - 0.088 13.2 0.4 0.088 13.2 0.3 3.9 4 1 0 4 4 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330508937|ref|YP_004385365.1| - 0.28 11.7 7.7 3.3 8.3 0.9 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain TIR_2 PF13676.1 gi|330508938|ref|YP_004385366.1| - 9.1e-11 41.8 0.0 1.5e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 TIR domain zf-C4pol PF14260.1 gi|330508938|ref|YP_004385366.1| - 0.0094 15.9 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 C4-type zinc-finger of DNA polymerase delta zinc_ribbon_2 PF13240.1 gi|330508938|ref|YP_004385366.1| - 0.058 12.8 0.8 1.4 8.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|330508938|ref|YP_004385366.1| - 0.29 10.5 1.3 3.8 6.9 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|330508938|ref|YP_004385366.1| - 0.31 10.2 3.1 1.7 7.9 2.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain FlpD PF02662.11 gi|330508939|ref|YP_004385367.1| - 3.1e-48 162.5 0.3 4.4e-46 155.6 0.1 2.8 2 0 0 2 2 2 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|330508939|ref|YP_004385367.1| - 1.2e-21 75.3 48.7 2e-08 33.5 2.5 5.2 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330508939|ref|YP_004385367.1| - 1.5e-16 59.9 24.2 6.2e-09 35.5 7.0 3.9 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330508939|ref|YP_004385367.1| - 6e-16 58.5 37.1 1.4e-08 35.0 9.6 4.5 4 1 1 5 5 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330508939|ref|YP_004385367.1| - 6.4e-15 55.6 23.9 0.0002 22.0 0.1 4.8 4 0 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|330508939|ref|YP_004385367.1| - 3.5e-14 51.9 56.8 4.6e-06 26.2 2.6 5.5 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330508939|ref|YP_004385367.1| - 8e-13 48.4 39.5 5.6e-08 32.9 8.8 3.1 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330508939|ref|YP_004385367.1| - 8.1e-13 47.4 47.7 5.1e-05 22.9 2.1 5.2 5 0 0 5 5 4 3 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|330508939|ref|YP_004385367.1| - 1.4e-11 44.6 4.9 1.7e-11 44.3 0.9 2.6 2 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_21 PF14697.1 gi|330508939|ref|YP_004385367.1| - 2.4e-11 43.3 39.1 1.2e-08 34.6 8.1 4.2 4 0 0 4 4 3 3 4Fe-4S dicluster domain DAO PF01266.19 gi|330508939|ref|YP_004385367.1| - 4e-10 39.1 2.3 6.5e-07 28.5 1.0 2.6 2 0 0 2 2 2 2 FAD dependent oxidoreductase Fer4_15 PF13459.1 gi|330508939|ref|YP_004385367.1| - 1.5e-09 38.2 25.5 0.0027 18.2 0.4 4.8 4 0 0 4 4 4 3 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|330508939|ref|YP_004385367.1| - 2.1e-09 37.2 25.0 0.00088 19.2 0.0 4.5 2 2 4 6 6 6 5 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|330508939|ref|YP_004385367.1| - 5.2e-09 35.6 0.6 9.1e-09 34.8 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_17 PF13534.1 gi|330508939|ref|YP_004385367.1| - 1.4e-08 34.9 20.9 0.019 15.3 0.0 4.2 3 1 0 3 3 3 3 4Fe-4S dicluster domain NAD_binding_8 PF13450.1 gi|330508939|ref|YP_004385367.1| - 5.6e-08 32.6 0.0 1.3e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_4 PF12800.2 gi|330508939|ref|YP_004385367.1| - 7.3e-07 29.0 46.2 0.002 18.3 2.5 5.6 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_18 PF13746.1 gi|330508939|ref|YP_004385367.1| - 1.5e-06 28.4 35.2 0.0025 18.1 1.3 5.1 4 1 1 5 5 4 3 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|330508939|ref|YP_004385367.1| - 3e-06 26.3 1.0 4.7e-06 25.7 0.7 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|330508939|ref|YP_004385367.1| - 1.8e-05 23.9 0.0 3.9e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|330508939|ref|YP_004385367.1| - 2.5e-05 23.3 1.0 3.6e-05 22.8 0.1 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|330508939|ref|YP_004385367.1| - 0.00022 21.5 0.7 0.00089 19.6 0.4 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|330508939|ref|YP_004385367.1| - 0.0003 19.9 0.3 0.00051 19.1 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|330508939|ref|YP_004385367.1| - 0.0012 18.9 0.1 0.0035 17.4 0.1 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|330508939|ref|YP_004385367.1| - 0.0013 17.9 0.0 0.0025 16.9 0.0 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase HI0933_like PF03486.9 gi|330508939|ref|YP_004385367.1| - 0.0013 17.2 0.7 0.0013 17.2 0.5 1.5 2 0 0 2 2 2 1 HI0933-like protein Fer4_3 PF12798.2 gi|330508939|ref|YP_004385367.1| - 0.0026 18.2 62.1 0.0032 17.9 3.8 5.9 6 0 0 6 6 4 3 4Fe-4S binding domain Lycopene_cycl PF05834.7 gi|330508939|ref|YP_004385367.1| - 0.0069 15.3 0.5 0.012 14.5 0.3 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Fer4_11 PF13247.1 gi|330508939|ref|YP_004385367.1| - 0.008 16.0 18.5 0.044 13.6 3.9 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain 3HCDH_N PF02737.13 gi|330508939|ref|YP_004385367.1| - 0.17 11.5 0.8 0.32 10.6 0.6 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_13 PF13370.1 gi|330508939|ref|YP_004385367.1| - 0.27 11.6 35.1 0.26 11.6 2.2 4.5 4 0 0 4 4 4 0 4Fe-4S single cluster domain Trp_halogenase PF04820.9 gi|330508939|ref|YP_004385367.1| - 0.36 9.4 0.4 0.64 8.5 0.3 1.4 1 0 0 1 1 1 0 Tryptophan halogenase Fer4_8 PF13183.1 gi|330508940|ref|YP_004385368.1| - 9.1e-11 41.6 9.7 1.4e-10 41.0 6.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330508940|ref|YP_004385368.1| - 7.7e-09 35.7 7.8 1.5e-08 34.8 5.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330508940|ref|YP_004385368.1| - 4.4e-08 33.2 6.3 8.4e-08 32.3 4.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508940|ref|YP_004385368.1| - 1.2e-07 31.4 7.0 2.2e-07 30.5 4.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330508940|ref|YP_004385368.1| - 1.1e-06 28.9 5.8 0.0092 16.3 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330508940|ref|YP_004385368.1| - 9.4e-06 25.9 7.5 2e-05 24.8 5.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330508940|ref|YP_004385368.1| - 2.3e-05 25.0 5.1 0.0073 17.0 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|330508940|ref|YP_004385368.1| - 6e-05 22.4 11.9 0.0081 15.7 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330508940|ref|YP_004385368.1| - 7.5e-05 22.4 12.8 0.007 16.2 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|330508940|ref|YP_004385368.1| - 0.00042 20.4 10.8 0.015 15.5 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330508940|ref|YP_004385368.1| - 0.0044 16.8 12.6 0.017 14.9 8.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330508940|ref|YP_004385368.1| - 0.021 14.7 2.4 0.021 14.7 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330508940|ref|YP_004385368.1| - 0.044 14.1 1.1 0.044 14.1 0.8 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|330508940|ref|YP_004385368.1| - 0.11 13.1 5.7 2.8 8.5 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|330508940|ref|YP_004385368.1| - 0.33 11.6 16.2 0.91 10.2 3.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|330508940|ref|YP_004385368.1| - 0.73 9.4 6.5 7.3 6.2 4.5 2.0 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CCG PF02754.11 gi|330508941|ref|YP_004385369.1| - 7e-28 96.4 0.5 2.4e-13 49.8 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain TMEM107 PF14995.1 gi|330508942|ref|YP_004385370.1| - 1 9.4 7.6 1.9 8.6 5.0 1.6 1 1 1 2 2 2 0 Transmembrane protein DUF1003 PF06210.6 gi|330508943|ref|YP_004385371.1| - 3.8e-30 103.9 2.4 5.2e-30 103.5 1.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1003) RHH_1 PF01402.16 gi|330508944|ref|YP_004385372.1| - 1.9e-08 33.8 0.0 3.8e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NAF PF03822.9 gi|330508944|ref|YP_004385372.1| - 0.012 15.2 0.9 0.04 13.6 0.1 2.2 2 0 0 2 2 2 0 NAF domain Thioredoxin_8 PF13905.1 gi|330508945|ref|YP_004385373.1| - 0.13 12.3 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like TIM PF00121.13 gi|330508946|ref|YP_004385374.1| - 8.4e-29 100.3 0.1 1.2e-26 93.3 0.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|330508946|ref|YP_004385374.1| - 0.00041 19.4 0.4 0.0011 18.0 0.1 1.8 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|330508946|ref|YP_004385374.1| - 0.00073 18.7 0.6 0.0013 17.9 0.2 1.5 2 0 0 2 2 2 1 Nitronate monooxygenase IGPS PF00218.16 gi|330508946|ref|YP_004385374.1| - 0.013 14.5 0.0 0.027 13.5 0.0 1.5 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|330508946|ref|YP_004385374.1| - 0.053 12.7 0.2 0.27 10.4 0.0 2.2 3 1 0 3 3 3 0 Histidine biosynthesis protein FMN_dh PF01070.13 gi|330508946|ref|YP_004385374.1| - 0.053 12.3 0.2 0.094 11.5 0.1 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Acylphosphatase PF00708.13 gi|330508947|ref|YP_004385375.1| - 4.6e-25 87.5 0.0 5e-25 87.4 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Fer4 PF00037.22 gi|330508948|ref|YP_004385376.1| - 1.4e-10 40.2 21.1 2.6e-05 23.6 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330508948|ref|YP_004385376.1| - 4e-08 32.7 19.5 0.00028 20.6 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330508948|ref|YP_004385376.1| - 2.2e-06 27.2 16.5 0.0048 16.7 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330508948|ref|YP_004385376.1| - 2.2e-06 28.2 17.0 0.0013 19.4 2.1 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|330508948|ref|YP_004385376.1| - 2.8e-05 24.4 20.8 0.00018 21.8 14.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330508948|ref|YP_004385376.1| - 6.2e-05 23.1 22.7 0.0057 16.9 16.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330508948|ref|YP_004385376.1| - 0.00014 21.5 19.5 0.00032 20.4 13.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330508948|ref|YP_004385376.1| - 0.00055 19.7 18.8 0.0017 18.1 13.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330508948|ref|YP_004385376.1| - 0.00084 19.6 15.9 0.048 14.0 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330508948|ref|YP_004385376.1| - 0.0013 18.6 21.6 0.022 14.7 15.1 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330508948|ref|YP_004385376.1| - 0.0021 18.4 18.8 0.0075 16.6 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330508948|ref|YP_004385376.1| - 0.0047 17.3 28.8 0.0078 16.7 3.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|330508948|ref|YP_004385376.1| - 0.0084 16.3 23.7 0.028 14.7 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330508948|ref|YP_004385376.1| - 0.029 14.9 13.9 0.073 13.6 3.6 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain zf-Paramyx-P PF13008.2 gi|330508948|ref|YP_004385376.1| - 0.18 11.0 16.2 0.26 10.5 5.2 2.1 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein Fer4_13 PF13370.1 gi|330508948|ref|YP_004385376.1| - 0.81 10.1 19.3 1.4 9.3 5.3 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain FAD_binding_3 PF01494.14 gi|330508949|ref|YP_004385377.1| - 7.7e-14 51.4 3.8 6.2e-06 25.4 0.3 3.0 3 0 0 3 3 3 3 FAD binding domain FAD_oxidored PF12831.2 gi|330508949|ref|YP_004385377.1| - 1.2e-09 37.7 3.8 5.2e-09 35.6 2.7 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330508949|ref|YP_004385377.1| - 1.8e-08 33.6 0.6 6.2e-07 28.6 0.2 2.4 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|330508949|ref|YP_004385377.1| - 6.9e-08 31.3 0.4 1e-07 30.7 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.19 gi|330508949|ref|YP_004385377.1| - 9.2e-08 31.3 3.3 0.00046 19.2 0.5 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|330508949|ref|YP_004385377.1| - 2.9e-07 29.5 0.1 0.001 17.8 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|330508949|ref|YP_004385377.1| - 2.5e-06 26.7 1.8 3.2e-05 23.1 1.2 2.2 1 1 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.7 gi|330508949|ref|YP_004385377.1| - 3e-06 26.4 0.1 0.00026 20.0 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|330508949|ref|YP_004385377.1| - 2.9e-05 24.0 4.4 4.5e-05 23.4 2.7 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|330508949|ref|YP_004385377.1| - 3.9e-05 23.5 0.3 0.00013 21.9 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|330508949|ref|YP_004385377.1| - 0.00043 19.2 2.5 0.00043 19.2 1.7 1.7 1 1 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|330508949|ref|YP_004385377.1| - 0.014 15.4 0.1 0.026 14.6 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|330508949|ref|YP_004385377.1| - 0.031 13.0 0.1 0.055 12.2 0.1 1.3 1 0 0 1 1 1 0 Squalene epoxidase 3HCDH_N PF02737.13 gi|330508949|ref|YP_004385377.1| - 0.033 13.8 0.4 0.033 13.8 0.3 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|330508949|ref|YP_004385377.1| - 0.072 13.5 0.2 0.072 13.5 0.1 2.5 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase H-K_ATPase_N PF09040.6 gi|330508949|ref|YP_004385377.1| - 0.17 12.0 1.0 0.39 10.8 0.7 1.6 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain HTH_34 PF13601.1 gi|330508951|ref|YP_004385379.1| - 0.007 16.3 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|330508951|ref|YP_004385379.1| - 0.05 13.3 0.1 0.11 12.1 0.0 1.7 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB FeoA PF04023.9 gi|330508952|ref|YP_004385380.1| - 1.7e-17 63.1 0.0 1.8e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 FeoA domain His_biosynth PF00977.16 gi|330508953|ref|YP_004385381.1| - 3.3e-75 252.2 0.0 3.8e-75 252.0 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|330508953|ref|YP_004385381.1| - 0.00026 19.9 0.0 0.15 10.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|330508953|ref|YP_004385381.1| - 0.0005 19.3 0.1 0.034 13.2 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|330508953|ref|YP_004385381.1| - 0.00078 18.7 0.1 0.0037 16.5 0.0 2.2 3 1 0 3 3 3 1 PcrB family IMPDH PF00478.20 gi|330508953|ref|YP_004385381.1| - 0.016 14.0 0.1 4.3 6.1 0.0 2.2 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain ThiG PF05690.9 gi|330508953|ref|YP_004385381.1| - 0.03 13.3 0.1 0.34 9.9 0.0 2.1 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|330508953|ref|YP_004385381.1| - 0.041 12.8 0.0 4.4 6.1 0.0 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase GATase PF00117.23 gi|330508954|ref|YP_004385382.1| - 3e-31 108.3 0.0 3.4e-31 108.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|330508954|ref|YP_004385382.1| - 8e-07 28.8 0.0 0.0099 15.5 0.0 2.0 2 0 0 2 2 2 2 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|330508954|ref|YP_004385382.1| - 1.8e-05 24.4 0.1 4.8e-05 23.0 0.1 1.8 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|330508954|ref|YP_004385382.1| - 8.8e-05 22.0 0.2 0.053 12.9 0.0 2.1 2 0 0 2 2 2 2 Peptidase C26 GATase_5 PF13507.1 gi|330508954|ref|YP_004385382.1| - 0.11 11.3 0.0 0.48 9.2 0.0 1.8 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain ELFV_dehydrog PF00208.16 gi|330508955|ref|YP_004385383.1| - 2.3e-69 233.7 1.8 3e-69 233.3 1.3 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|330508955|ref|YP_004385383.1| - 4.5e-51 171.8 0.0 7.3e-51 171.1 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|330508955|ref|YP_004385383.1| - 0.0071 15.5 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_1 PF00175.16 gi|330508956|ref|YP_004385384.1| - 9.1e-15 55.1 0.0 1.3e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|330508956|ref|YP_004385384.1| - 7.4e-09 35.6 0.0 1.1e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|330508956|ref|YP_004385384.1| - 1.4e-05 25.0 0.0 1.9e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Ferric reductase NAD binding domain FAD_binding_8 PF08022.7 gi|330508956|ref|YP_004385384.1| - 0.0048 16.7 0.0 0.02 14.7 0.0 2.1 2 1 0 2 2 2 1 FAD-binding domain PDH PF02153.12 gi|330508957|ref|YP_004385385.1| - 2e-48 164.5 0.0 2.3e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.10 gi|330508957|ref|YP_004385385.1| - 2.5e-07 30.6 0.0 4.3e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|330508957|ref|YP_004385385.1| - 5.9e-06 26.6 0.0 1.5e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|330508957|ref|YP_004385385.1| - 0.00017 20.7 0.0 0.00036 19.7 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B12-binding PF02310.14 gi|330508957|ref|YP_004385385.1| - 0.0068 16.2 0.1 0.21 11.4 0.0 2.6 2 1 0 2 2 2 1 B12 binding domain Epimerase PF01370.16 gi|330508957|ref|YP_004385385.1| - 0.042 13.2 0.0 0.065 12.6 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ApbA PF02558.11 gi|330508957|ref|YP_004385385.1| - 0.058 12.8 0.1 0.19 11.1 0.0 1.8 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.8 gi|330508957|ref|YP_004385385.1| - 0.069 12.4 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|330508957|ref|YP_004385385.1| - 0.35 10.6 3.6 14 5.4 2.5 2.2 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_dh_N PF08501.6 gi|330508958|ref|YP_004385386.1| - 5.8e-24 83.9 0.0 1.2e-23 82.8 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|330508958|ref|YP_004385386.1| - 2.2e-18 66.6 0.0 3.7e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|330508958|ref|YP_004385386.1| - 2.1e-06 28.0 0.1 4.9e-06 26.8 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|330508958|ref|YP_004385386.1| - 1.8e-05 23.9 0.0 2.9e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|330508958|ref|YP_004385386.1| - 2.4e-05 23.4 0.1 0.0019 17.3 0.0 2.2 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Saccharop_dh PF03435.13 gi|330508958|ref|YP_004385386.1| - 0.001 18.1 0.2 0.0021 17.1 0.2 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|330508958|ref|YP_004385386.1| - 0.0015 18.5 0.4 0.0027 17.7 0.2 1.5 2 0 0 2 2 2 1 NADH(P)-binding IlvN PF07991.7 gi|330508958|ref|YP_004385386.1| - 0.0029 16.9 0.1 0.0055 16.0 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain OCD_Mu_crystall PF02423.10 gi|330508958|ref|YP_004385386.1| - 0.0057 15.4 0.0 0.0076 15.0 0.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_7 PF13241.1 gi|330508958|ref|YP_004385386.1| - 0.041 14.1 0.1 0.066 13.4 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding GARS_N PF02844.10 gi|330508958|ref|YP_004385386.1| - 0.068 13.6 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain UDPG_MGDP_dh_C PF03720.10 gi|330508958|ref|YP_004385386.1| - 0.078 13.1 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GFO_IDH_MocA PF01408.17 gi|330508958|ref|YP_004385386.1| - 0.083 13.4 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|330508958|ref|YP_004385386.1| - 0.13 12.0 0.2 0.32 10.7 0.2 1.8 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF92 PF01940.11 gi|330508959|ref|YP_004385387.1| - 2.1e-67 226.5 18.5 2.1e-67 226.5 12.8 2.2 2 1 1 3 3 3 1 Integral membrane protein DUF92 Prenyltransf PF01255.14 gi|330508960|ref|YP_004385388.1| - 5.8e-33 113.9 0.0 6.4e-31 107.2 0.0 2.0 1 1 1 2 2 2 2 Putative undecaprenyl diphosphate synthase PTS_2-RNA PF01885.11 gi|330508961|ref|YP_004385389.1| - 6.5e-36 123.3 0.0 7.9e-36 123.1 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Nol1_Nop2_Fmu_2 PF13636.1 gi|330508961|ref|YP_004385389.1| - 0.021 14.8 0.0 0.04 13.9 0.0 1.7 1 1 0 1 1 1 0 pre-rRNA processing and ribosome biogenesis GCHY-1 PF02649.9 gi|330508962|ref|YP_004385390.1| - 2.9e-90 302.2 0.1 3.3e-90 302.1 0.1 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF739 PF05339.6 gi|330508963|ref|YP_004385391.1| - 2.7e-25 88.7 0.1 3.9e-25 88.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF739) DDE_Tnp_ISAZ013 PF07592.6 gi|330508965|ref|YP_004385393.1| - 1.9e-135 450.5 0.0 2.3e-135 450.3 0.0 1.1 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain HTH_Tnp_Tc3_2 PF01498.13 gi|330508965|ref|YP_004385393.1| - 5.9e-06 26.2 0.0 1.7e-05 24.7 0.0 1.8 1 0 0 1 1 1 1 Transposase HTH_29 PF13551.1 gi|330508965|ref|YP_004385393.1| - 6.2e-06 26.3 0.1 1.5e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_21 PF13276.1 gi|330508965|ref|YP_004385393.1| - 0.00052 19.9 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 HTH-like domain HTH_32 PF13565.1 gi|330508965|ref|YP_004385393.1| - 0.00067 20.3 0.4 0.0024 18.6 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain GSH-S_N PF02951.9 gi|330508965|ref|YP_004385393.1| - 0.0019 17.9 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain HTH_36 PF13730.1 gi|330508965|ref|YP_004385393.1| - 0.0099 15.9 0.3 0.94 9.6 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|330508965|ref|YP_004385393.1| - 0.027 14.1 0.6 0.096 12.4 0.0 2.2 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_23 PF13384.1 gi|330508965|ref|YP_004385393.1| - 0.11 12.1 0.0 18 5.1 0.0 2.8 2 0 0 2 2 2 0 Homeodomain-like domain KfrA_N PF11740.3 gi|330508965|ref|YP_004385393.1| - 0.17 12.3 0.0 3.3 8.1 0.0 2.2 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term HTH_28 PF13518.1 gi|330508965|ref|YP_004385393.1| - 0.25 11.3 3.4 2.2 8.3 0.0 2.9 3 0 0 3 3 2 0 Helix-turn-helix domain Y1_Tnp PF01797.11 gi|330508966|ref|YP_004385394.1| - 3.6e-21 75.2 0.1 3.9e-21 75.1 0.1 1.0 1 0 0 1 1 1 1 Transposase IS200 like DeoC PF01791.4 gi|330508967|ref|YP_004385395.1| - 1.3e-54 184.9 0.0 1.6e-54 184.7 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.9 gi|330508967|ref|YP_004385395.1| - 0.00085 18.4 1.6 0.00095 18.3 0.4 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.7 gi|330508967|ref|YP_004385395.1| - 0.041 12.8 0.1 0.087 11.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF561) OMPdecase PF00215.19 gi|330508967|ref|YP_004385395.1| - 0.043 13.2 0.4 0.12 11.7 0.1 2.0 2 1 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.16 gi|330508967|ref|YP_004385395.1| - 0.061 12.5 0.0 0.18 11.0 0.0 1.8 3 0 0 3 3 3 0 Histidine biosynthesis protein PEP_mutase PF13714.1 gi|330508967|ref|YP_004385395.1| - 0.11 11.7 0.2 0.54 9.4 0.0 2.2 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase GyrI-like PF06445.10 gi|330508969|ref|YP_004385397.1| - 3.8e-17 62.7 0.1 4.4e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.1 gi|330508969|ref|YP_004385397.1| - 4.4e-07 30.0 0.0 6.2e-07 29.5 0.0 1.3 1 1 0 1 1 1 1 Integron-associated effector binding protein DDE_3 PF13358.1 gi|330508970|ref|YP_004385398.1| - 2.6e-23 82.3 0.0 3.2e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease rve_3 PF13683.1 gi|330508970|ref|YP_004385398.1| - 0.014 14.8 0.4 0.14 11.6 0.0 2.4 3 0 0 3 3 3 0 Integrase core domain rve_2 PF13333.1 gi|330508970|ref|YP_004385398.1| - 0.024 14.6 0.0 0.051 13.6 0.0 1.6 1 0 0 1 1 1 0 Integrase core domain Transposase_mut PF00872.13 gi|330508972|ref|YP_004385400.1| - 1.3e-104 349.7 1.1 1.6e-104 349.5 0.7 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|330508972|ref|YP_004385400.1| - 2.4e-14 53.2 0.1 6.6e-14 51.8 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.12 gi|330508972|ref|YP_004385400.1| - 3.5e-05 23.5 0.7 0.0016 18.1 0.0 2.2 1 1 1 2 2 2 2 Transposase OrfB_Zn_ribbon PF07282.6 gi|330508973|ref|YP_004385401.1| - 3.7e-23 80.9 0.6 8.6e-23 79.7 0.0 2.0 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330508973|ref|YP_004385401.1| - 1.3e-08 34.5 0.8 1.6e-08 34.2 0.6 1.1 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|330508973|ref|YP_004385401.1| - 0.026 14.1 0.1 0.061 13.0 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1610 PF07754.6 gi|330508973|ref|YP_004385401.1| - 0.066 13.3 5.7 0.73 10.0 4.0 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) zf-C3HC4_3 PF13920.1 gi|330508973|ref|YP_004385401.1| - 0.26 11.0 3.2 0.45 10.2 2.2 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Beta_helix PF13229.1 gi|330508974|ref|YP_004385402.1| - 2.1e-07 30.8 0.8 0.016 14.9 0.0 2.9 1 1 1 2 2 2 2 Right handed beta helix region NosD PF05048.8 gi|330508974|ref|YP_004385402.1| - 0.0023 17.1 0.1 0.34 10.0 0.0 2.2 1 1 0 2 2 2 2 Periplasmic copper-binding protein (NosD) OrfB_Zn_ribbon PF07282.6 gi|330508975|ref|YP_004385403.1| - 8e-17 60.6 3.6 8e-17 60.6 2.5 2.2 3 0 0 3 3 3 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330508975|ref|YP_004385403.1| - 3.5e-08 33.1 0.2 5.1e-08 32.6 0.2 1.2 1 0 0 1 1 1 1 Probable transposase zf-ribbon_3 PF13248.1 gi|330508975|ref|YP_004385403.1| - 7.7e-05 21.7 7.1 0.015 14.4 0.9 2.8 2 1 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|330508975|ref|YP_004385403.1| - 0.097 12.1 9.0 2.6 7.6 2.0 3.1 2 1 1 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|330508975|ref|YP_004385403.1| - 0.51 10.0 9.4 0.32 10.7 1.7 2.8 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2HC5 PF06221.8 gi|330508975|ref|YP_004385403.1| - 1.1 9.0 9.1 3.4 7.4 0.7 2.7 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.7 gi|330508975|ref|YP_004385403.1| - 1.2 8.5 0.0 1.2 8.5 0.0 3.5 2 1 1 3 3 3 0 TFIIB zinc-binding Tnp_zf-ribbon_2 PF13842.1 gi|330508975|ref|YP_004385403.1| - 2.2 8.7 10.3 12 6.4 0.3 2.9 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon TRAM PF01938.15 gi|330508976|ref|YP_004385404.1| - 8.7e-12 44.6 0.7 1e-11 44.4 0.5 1.1 1 0 0 1 1 1 1 TRAM domain Exc PF07825.6 gi|330508976|ref|YP_004385404.1| - 0.065 12.9 0.0 0.082 12.6 0.0 1.3 1 0 0 1 1 1 0 Excisionase-like protein TRAM PF01938.15 gi|330508977|ref|YP_004385405.1| - 6.3e-13 48.2 0.7 7.4e-13 48.0 0.5 1.1 1 0 0 1 1 1 1 TRAM domain Nol1_Nop2_Fmu PF01189.12 gi|330508978|ref|YP_004385406.1| - 5.5e-49 167.0 0.0 6.9e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_26 PF13659.1 gi|330508978|ref|YP_004385406.1| - 3e-07 30.4 0.0 4.7e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330508978|ref|YP_004385406.1| - 1.1e-05 25.9 0.0 2.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330508978|ref|YP_004385406.1| - 4.3e-05 23.1 0.0 5.8e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|330508978|ref|YP_004385406.1| - 8.2e-05 22.6 0.0 0.0002 21.3 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.14 gi|330508978|ref|YP_004385406.1| - 0.0029 17.1 0.0 0.0043 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|330508978|ref|YP_004385406.1| - 0.18 10.8 0.0 2.7 7.0 0.0 2.0 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Nol1_Nop2_Fmu_2 PF13636.1 gi|330508979|ref|YP_004385407.1| - 2.8e-17 62.6 0.0 3.4e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis Radical_SAM PF04055.16 gi|330508980|ref|YP_004385408.1| - 1.3e-12 48.2 0.4 6e-12 46.0 0.1 2.1 3 0 0 3 3 3 1 Radical SAM superfamily LRV PF01816.12 gi|330508981|ref|YP_004385409.1| - 8.5e-39 129.1 9.6 5.3e-06 26.2 0.0 9.0 9 0 0 9 9 9 8 Leucine rich repeat variant HEAT PF02985.17 gi|330508981|ref|YP_004385409.1| - 8.7e-08 31.6 20.4 1.1 9.4 0.0 8.8 9 0 0 9 9 9 3 HEAT repeat HEAT_2 PF13646.1 gi|330508981|ref|YP_004385409.1| - 0.00015 22.0 16.1 0.33 11.2 0.4 5.7 4 4 0 4 4 4 3 HEAT repeats XPC-binding PF09280.6 gi|330508981|ref|YP_004385409.1| - 0.01 15.3 0.1 2.7 7.5 0.0 4.1 5 1 1 6 6 6 0 XPC-binding domain DUF2336 PF10098.4 gi|330508981|ref|YP_004385409.1| - 0.074 12.2 10.7 0.84 8.8 0.1 2.9 1 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2336) eRF1_2 PF03464.10 gi|330508982|ref|YP_004385410.1| - 3.4e-05 24.1 0.6 6e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 eRF1 domain 2 SlyX PF04102.7 gi|330508982|ref|YP_004385410.1| - 0.0014 18.9 7.8 0.0025 18.1 4.3 2.2 2 0 0 2 2 2 1 SlyX Myosin_tail_1 PF01576.14 gi|330508982|ref|YP_004385410.1| - 0.0025 15.6 7.5 0.0025 15.6 5.2 1.5 2 0 0 2 2 2 1 Myosin tail CENP-F_leu_zip PF10473.4 gi|330508982|ref|YP_004385410.1| - 0.0079 16.0 9.6 0.0079 16.0 6.7 2.0 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATG11 PF10377.4 gi|330508982|ref|YP_004385410.1| - 0.18 11.7 0.8 0.31 10.9 0.6 1.4 1 0 0 1 1 1 0 Autophagy-related protein 11 Cep57_CLD_2 PF14197.1 gi|330508982|ref|YP_004385410.1| - 0.34 10.8 7.5 4.9 7.1 3.6 2.7 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 DUF972 PF06156.8 gi|330508982|ref|YP_004385410.1| - 0.62 10.4 7.8 0.3 11.4 3.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF972) ADIP PF11559.3 gi|330508982|ref|YP_004385410.1| - 1.2 9.0 11.4 14 5.5 0.1 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Rho_Binding PF08912.6 gi|330508982|ref|YP_004385410.1| - 1.6 9.0 10.6 0.43 10.9 3.2 2.4 2 0 0 2 2 2 0 Rho Binding DUF1664 PF07889.7 gi|330508982|ref|YP_004385410.1| - 4.1 7.2 5.7 6 6.6 2.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) IncA PF04156.9 gi|330508982|ref|YP_004385410.1| - 4.6 6.7 10.1 3.4 7.2 4.4 2.1 2 0 0 2 2 2 0 IncA protein APG6 PF04111.7 gi|330508982|ref|YP_004385410.1| - 7.7 5.4 9.0 4.5 6.2 3.7 1.9 2 0 0 2 2 2 0 Autophagy protein Apg6 FlaC_arch PF05377.6 gi|330508982|ref|YP_004385410.1| - 8.6 6.3 7.0 4.8 7.1 3.1 1.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Zn_Tnp_IS1595 PF12760.2 gi|330508984|ref|YP_004385412.1| - 0.071 12.9 2.7 0.12 12.1 1.9 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain IBR PF01485.16 gi|330508984|ref|YP_004385412.1| - 0.072 12.9 1.6 0.091 12.6 1.1 1.1 1 0 0 1 1 1 0 IBR domain Cys_rich_CPCC PF14206.1 gi|330508984|ref|YP_004385412.1| - 0.088 12.3 1.1 0.12 11.9 0.8 1.3 1 0 0 1 1 1 0 Cysteine-rich CPCC TF_Zn_Ribbon PF08271.7 gi|330508984|ref|YP_004385412.1| - 0.11 11.8 2.1 0.42 9.9 0.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding CpXC PF14353.1 gi|330508984|ref|YP_004385412.1| - 0.15 11.9 3.1 4.9 7.1 0.1 2.0 1 1 1 2 2 2 0 CpXC protein HypA PF01155.14 gi|330508984|ref|YP_004385412.1| - 0.17 11.5 1.9 0.73 9.5 0.1 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-HYPF PF07503.7 gi|330508984|ref|YP_004385412.1| - 0.22 10.9 4.5 2.7 7.4 0.1 2.2 2 0 0 2 2 2 0 HypF finger OrfB_Zn_ribbon PF07282.6 gi|330508984|ref|YP_004385412.1| - 0.25 10.9 2.2 0.69 9.6 1.5 1.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|330508984|ref|YP_004385412.1| - 0.31 10.7 6.2 0.74 9.5 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 FeS PF04060.8 gi|330508984|ref|YP_004385412.1| - 0.56 9.8 6.8 2.3 7.8 0.1 2.2 2 0 0 2 2 2 0 Putative Fe-S cluster zf-TFIIB PF13453.1 gi|330508984|ref|YP_004385412.1| - 0.65 9.2 3.1 0.9 8.7 2.2 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger Rubredoxin PF00301.15 gi|330508984|ref|YP_004385412.1| - 0.75 9.7 6.3 6.1 6.7 0.3 2.5 2 1 1 3 3 3 0 Rubredoxin DZR PF12773.2 gi|330508984|ref|YP_004385412.1| - 0.78 9.6 4.3 8.9 6.2 3.3 1.9 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|330508984|ref|YP_004385412.1| - 0.84 9.9 4.0 2.8 8.3 2.8 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|330508984|ref|YP_004385412.1| - 0.92 8.8 6.3 5.3 6.3 4.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|330508984|ref|YP_004385412.1| - 1.1 8.8 4.8 2.5 7.7 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF504 PF04457.7 gi|330508985|ref|YP_004385413.1| - 1e-13 51.1 0.4 1.3e-13 50.8 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF504) bPH_4 PF06713.6 gi|330508985|ref|YP_004385413.1| - 0.022 14.5 0.1 0.033 14.0 0.1 1.2 1 0 0 1 1 1 0 Bacterial PH domain Lactamase_B_2 PF12706.2 gi|330508986|ref|YP_004385414.1| - 1.6e-19 70.2 0.1 2e-19 69.8 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|330508986|ref|YP_004385414.1| - 1.1e-07 31.7 4.0 3e-07 30.2 2.0 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily PDEase_II PF02112.10 gi|330508986|ref|YP_004385414.1| - 0.019 13.9 0.5 0.027 13.3 0.3 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II C1_1 PF00130.17 gi|330508987|ref|YP_004385415.1| - 0.023 14.3 2.2 0.031 13.9 1.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_6 PF14599.1 gi|330508987|ref|YP_004385415.1| - 0.064 13.0 3.3 1.8 8.4 2.4 2.0 1 1 1 2 2 2 0 Zinc-ribbon Ecl1 PF12855.2 gi|330508987|ref|YP_004385415.1| - 0.07 12.4 0.9 0.091 12.0 0.6 1.2 1 0 0 1 1 1 0 Life-span regulatory factor LIM PF00412.17 gi|330508987|ref|YP_004385415.1| - 0.22 11.5 3.2 0.31 11.1 2.2 1.2 1 0 0 1 1 1 0 LIM domain DZR PF12773.2 gi|330508987|ref|YP_004385415.1| - 0.51 10.1 5.2 0.84 9.5 3.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF326 PF03860.11 gi|330508987|ref|YP_004385415.1| - 8.7 6.3 7.8 2.9 7.8 2.5 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) ERCC4 PF02732.10 gi|330508988|ref|YP_004385416.1| - 8.6e-28 96.8 0.1 2.7e-27 95.2 0.0 1.9 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|330508988|ref|YP_004385416.1| - 1e-22 79.7 0.0 2.1e-20 72.3 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|330508988|ref|YP_004385416.1| - 1.8e-19 69.8 0.1 1.8e-18 66.6 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|330508988|ref|YP_004385416.1| - 2.1e-16 60.2 0.0 5.2e-16 59.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|330508988|ref|YP_004385416.1| - 8.8e-14 51.1 0.0 3.1e-13 49.3 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|330508988|ref|YP_004385416.1| - 4.5e-10 39.5 0.4 1.7e-09 37.7 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|330508988|ref|YP_004385416.1| - 2.9e-05 23.5 1.2 0.0026 17.3 0.1 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|330508988|ref|YP_004385416.1| - 0.0035 17.4 0.1 0.2 11.8 0.1 3.2 2 1 1 3 3 3 1 Helix-hairpin-helix domain SNF2_N PF00176.18 gi|330508988|ref|YP_004385416.1| - 0.0065 15.2 0.0 0.012 14.4 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain SecA_DEAD PF07517.9 gi|330508988|ref|YP_004385416.1| - 0.0077 15.5 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 SecA DEAD-like domain 5_3_exonuc PF01367.15 gi|330508988|ref|YP_004385416.1| - 0.0087 16.2 0.0 0.036 14.2 0.0 2.1 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold Helicase_C_2 PF13307.1 gi|330508988|ref|YP_004385416.1| - 0.01 15.8 0.0 0.033 14.1 0.0 1.9 2 0 0 2 2 2 0 Helicase C-terminal domain DUF2075 PF09848.4 gi|330508988|ref|YP_004385416.1| - 0.033 13.1 0.0 0.099 11.6 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) HHH_3 PF12836.2 gi|330508988|ref|YP_004385416.1| - 0.083 12.8 0.1 0.96 9.4 0.0 2.6 2 1 0 2 2 1 0 Helix-hairpin-helix motif LPAM_2 PF13627.1 gi|330508989|ref|YP_004385417.1| - 0.65 9.7 5.3 1.1 9.0 3.7 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site DUF2072 PF09845.4 gi|330508992|ref|YP_004385420.1| - 8.1e-35 119.6 0.0 1.1e-34 119.1 0.0 1.2 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) zf-C2H2_6 PF13912.1 gi|330508992|ref|YP_004385420.1| - 0.024 14.5 0.0 0.024 14.5 0.0 1.7 2 0 0 2 2 2 0 C2H2-type zinc finger Prok-RING_1 PF14446.1 gi|330508992|ref|YP_004385420.1| - 0.035 13.8 0.4 0.049 13.3 0.3 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF2073 PF09846.4 gi|330508993|ref|YP_004385421.1| - 1.5e-43 146.7 1.4 1.7e-43 146.5 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|330508994|ref|YP_004385422.1| - 4.1e-16 58.9 0.0 5.3e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|330508994|ref|YP_004385422.1| - 1.5e-15 57.1 0.0 3.7e-08 33.0 0.0 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|330508994|ref|YP_004385422.1| - 3.2e-06 26.5 0.0 0.015 14.5 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family AAA PF00004.24 gi|330508994|ref|YP_004385422.1| - 9e-05 22.6 0.0 0.00016 21.9 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|330508994|ref|YP_004385422.1| - 0.00026 21.4 0.0 0.0021 18.5 0.0 2.0 1 1 0 1 1 1 1 Miro-like protein FeoB_N PF02421.13 gi|330508994|ref|YP_004385422.1| - 0.0003 20.0 0.1 0.0035 16.6 0.1 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B Septin PF00735.13 gi|330508994|ref|YP_004385422.1| - 0.00095 18.2 0.0 0.0013 17.8 0.0 1.2 1 0 0 1 1 1 1 Septin SRPRB PF09439.5 gi|330508994|ref|YP_004385422.1| - 0.0013 18.0 0.0 0.17 11.1 0.0 2.3 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit Arch_ATPase PF01637.13 gi|330508994|ref|YP_004385422.1| - 0.0025 17.5 0.0 0.0036 17.0 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|330508994|ref|YP_004385422.1| - 0.0029 18.4 0.0 0.0055 17.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|330508994|ref|YP_004385422.1| - 0.0037 16.6 0.1 0.0076 15.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain Parvo_NS1 PF01057.12 gi|330508994|ref|YP_004385422.1| - 0.0086 14.9 0.1 0.014 14.3 0.1 1.2 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_10 PF12846.2 gi|330508994|ref|YP_004385422.1| - 0.0091 15.4 0.0 0.0096 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|330508994|ref|YP_004385422.1| - 0.0098 16.0 0.0 0.027 14.6 0.0 1.8 1 1 1 2 2 2 1 AAA domain DUF258 PF03193.11 gi|330508994|ref|YP_004385422.1| - 0.015 14.4 0.0 0.023 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|330508994|ref|YP_004385422.1| - 0.022 15.0 0.0 0.034 14.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|330508994|ref|YP_004385422.1| - 0.026 14.1 0.0 0.065 12.8 0.0 1.6 2 0 0 2 2 2 0 NACHT domain ArgK PF03308.11 gi|330508994|ref|YP_004385422.1| - 0.036 12.8 0.0 0.64 8.7 0.0 2.4 2 1 0 2 2 2 0 ArgK protein NB-ARC PF00931.17 gi|330508994|ref|YP_004385422.1| - 0.037 12.8 0.0 0.056 12.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|330508994|ref|YP_004385422.1| - 0.062 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|330508994|ref|YP_004385422.1| - 0.069 13.4 0.0 0.09 13.0 0.0 1.2 1 0 0 1 1 1 0 ABC transporter Dynamin_N PF00350.18 gi|330508994|ref|YP_004385422.1| - 0.07 12.9 0.0 8.7 6.1 0.0 2.3 1 1 0 2 2 2 0 Dynamin family cobW PF02492.14 gi|330508994|ref|YP_004385422.1| - 0.12 11.7 0.1 0.75 9.2 0.0 2.0 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|330508994|ref|YP_004385422.1| - 0.14 11.6 0.0 12 5.3 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.7 gi|330508994|ref|YP_004385422.1| - 0.14 11.2 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Radical_SAM PF04055.16 gi|330508995|ref|YP_004385423.1| - 8.7e-15 55.2 0.4 1.5e-14 54.4 0.3 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330508995|ref|YP_004385423.1| - 0.0095 16.0 0.0 0.018 15.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|330508995|ref|YP_004385423.1| - 0.018 15.3 0.1 0.046 14.0 0.0 1.8 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain Arginosuc_synth PF00764.14 gi|330508996|ref|YP_004385424.1| - 4e-163 542.9 0.0 4.6e-163 542.7 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.12 gi|330508996|ref|YP_004385424.1| - 0.016 14.1 0.0 0.024 13.5 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Asn_synthase PF00733.16 gi|330508996|ref|YP_004385424.1| - 0.094 12.1 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase DUF2111 PF09884.4 gi|330508997|ref|YP_004385425.1| - 6.4e-31 106.0 3.1 8.9e-31 105.5 2.2 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Acetyltransf_1 PF00583.19 gi|330508998|ref|YP_004385426.1| - 9.5e-14 51.1 0.2 1.5e-13 50.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|330508998|ref|YP_004385426.1| - 1.3e-08 34.9 0.0 1.8e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|330508998|ref|YP_004385426.1| - 4.4e-08 33.2 0.0 5.5e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|330508998|ref|YP_004385426.1| - 6.7e-06 25.9 0.0 2.5e-05 24.1 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|330508998|ref|YP_004385426.1| - 2.1e-05 24.1 0.1 2.9e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|330508998|ref|YP_004385426.1| - 0.023 14.6 0.0 0.056 13.4 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|330508998|ref|YP_004385426.1| - 0.035 13.7 0.0 0.044 13.3 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|330508998|ref|YP_004385426.1| - 0.092 12.6 0.0 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF3793 PF12672.2 gi|330508998|ref|YP_004385426.1| - 0.13 11.8 0.1 0.21 11.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3793) Cellulose_synt PF03552.9 gi|330508998|ref|YP_004385426.1| - 0.14 10.4 0.0 0.17 10.1 0.0 1.0 1 0 0 1 1 1 0 Cellulose synthase Dicty_CTDC PF00526.13 gi|330508999|ref|YP_004385427.1| - 1.3e-14 53.5 139.5 0.0028 17.4 6.5 12.8 12 1 0 12 12 12 9 Dictyostelium (slime mold) repeat DUF87 PF01935.12 gi|330509000|ref|YP_004385428.1| - 2e-36 125.9 0.0 3.9e-36 124.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|330509000|ref|YP_004385428.1| - 1.9e-27 96.5 0.0 2.5e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|330509000|ref|YP_004385428.1| - 2.2e-07 30.6 0.1 6e-07 29.2 0.1 1.8 1 0 0 1 1 1 1 HAS barrel domain DUF853 PF05872.7 gi|330509000|ref|YP_004385428.1| - 1.7e-06 26.6 0.0 0.021 13.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|330509000|ref|YP_004385428.1| - 8.9e-06 25.3 0.2 0.0012 18.3 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|330509000|ref|YP_004385428.1| - 1.5e-05 23.8 0.0 0.0025 16.5 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|330509000|ref|YP_004385428.1| - 0.00049 19.6 0.0 0.0069 15.8 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) T2SE PF00437.15 gi|330509000|ref|YP_004385428.1| - 0.00092 18.1 0.0 0.017 14.0 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein DEAD PF00270.24 gi|330509000|ref|YP_004385428.1| - 0.0042 16.5 0.0 0.57 9.6 0.0 2.8 2 1 0 2 2 2 1 DEAD/DEAH box helicase TraG-D_C PF12696.2 gi|330509000|ref|YP_004385428.1| - 0.0062 16.3 0.0 0.018 14.8 0.0 1.8 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.9 gi|330509000|ref|YP_004385428.1| - 0.0067 15.0 0.0 0.014 14.0 0.0 1.5 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer ResIII PF04851.10 gi|330509000|ref|YP_004385428.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Dodecin PF07311.7 gi|330509001|ref|YP_004385429.1| - 1.8e-27 95.1 0.2 2e-27 95.0 0.1 1.0 1 0 0 1 1 1 1 Dodecin HMG_CoA_synt_C PF08540.5 gi|330509002|ref|YP_004385430.1| - 3.2e-27 95.7 0.0 4.3e-27 95.3 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|330509002|ref|YP_004385430.1| - 7.6e-21 74.4 0.0 1.5e-20 73.4 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III_C PF08541.5 gi|330509002|ref|YP_004385430.1| - 0.035 14.1 0.1 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Peripla_BP_2 PF01497.13 gi|330509003|ref|YP_004385431.1| - 2.2e-21 76.0 0.0 6.5e-20 71.2 0.0 2.1 1 1 1 2 2 2 2 Periplasmic binding protein TypeIII_RM_meth PF12564.3 gi|330509003|ref|YP_004385431.1| - 0.14 12.1 0.3 0.38 10.7 0.2 1.7 1 0 0 1 1 1 0 Type III restriction/modification enzyme methylation subunit NAD_binding_1 PF00175.16 gi|330509005|ref|YP_004385433.1| - 2.5e-13 50.5 0.0 5e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|330509005|ref|YP_004385433.1| - 8.8e-12 44.3 2.0 8.8e-12 44.3 1.4 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.1 gi|330509005|ref|YP_004385433.1| - 0.002 17.9 0.1 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_6 PF00970.19 gi|330509005|ref|YP_004385433.1| - 0.034 14.2 0.0 0.058 13.5 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase FAD-binding domain Fer2 PF00111.22 gi|330509005|ref|YP_004385433.1| - 0.18 11.5 1.2 0.35 10.6 0.2 1.9 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain AMP-binding PF00501.23 gi|330509006|ref|YP_004385434.1| - 5.2e-104 347.9 0.0 6.1e-104 347.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330509006|ref|YP_004385434.1| - 1.5e-16 61.1 0.0 3.2e-16 60.0 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Glu_synthase PF01645.12 gi|330509007|ref|YP_004385435.1| - 3e-14 52.7 0.0 6.8e-10 38.3 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase UvrC_HhH_N PF08459.6 gi|330509008|ref|YP_004385436.1| - 6.4e-58 194.6 0.0 1.6e-57 193.4 0.0 1.7 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.19 gi|330509008|ref|YP_004385436.1| - 4.1e-09 36.6 0.1 1.7e-08 34.7 0.0 2.1 2 0 0 2 2 2 1 GIY-YIG catalytic domain UVR PF02151.14 gi|330509008|ref|YP_004385436.1| - 4.3e-07 29.2 2.2 1.1e-06 27.9 1.5 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif Pox_polyA_pol_N PF12630.2 gi|330509008|ref|YP_004385436.1| - 0.0039 17.2 0.0 0.013 15.5 0.0 1.9 1 0 0 1 1 1 1 Poxvirus poly(A) polymerase N-terminal domain AIF_C PF14721.1 gi|330509008|ref|YP_004385436.1| - 0.017 15.3 0.0 0.039 14.1 0.0 1.6 1 0 0 1 1 1 0 Apoptosis-inducing factor, mitochondrion-associated, C-term TMP-TENI PF02581.12 gi|330509009|ref|YP_004385437.1| - 8e-62 207.5 0.1 9.1e-62 207.3 0.1 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|330509009|ref|YP_004385437.1| - 0.0026 16.7 0.2 0.0041 16.1 0.1 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|330509009|ref|YP_004385437.1| - 0.0031 16.7 0.0 0.0056 15.9 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.10 gi|330509009|ref|YP_004385437.1| - 0.0083 15.3 0.7 0.03 13.4 0.5 1.9 1 1 0 1 1 1 1 Nitronate monooxygenase Ribul_P_3_epim PF00834.14 gi|330509009|ref|YP_004385437.1| - 0.044 12.8 0.1 0.072 12.1 0.0 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DUF561 PF04481.7 gi|330509009|ref|YP_004385437.1| - 0.056 12.3 0.1 0.23 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF561) PcrB PF01884.12 gi|330509009|ref|YP_004385437.1| - 0.058 12.6 0.1 0.16 11.1 0.0 1.7 1 1 1 2 2 2 0 PcrB family HK PF02110.10 gi|330509010|ref|YP_004385438.1| - 6.2e-79 264.6 5.6 7.1e-79 264.4 3.9 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|330509010|ref|YP_004385438.1| - 2.6e-06 26.8 1.3 3.3e-06 26.5 0.9 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.7 gi|330509010|ref|YP_004385438.1| - 3.9e-06 26.2 2.5 4.9e-06 25.9 1.8 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase eRF1_2 PF03464.10 gi|330509010|ref|YP_004385438.1| - 0.11 12.7 0.0 0.55 10.5 0.0 2.0 2 1 1 3 3 3 0 eRF1 domain 2 2-Hacid_dh_C PF02826.14 gi|330509011|ref|YP_004385439.1| - 2.3e-60 202.7 0.1 4.5e-60 201.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|330509011|ref|YP_004385439.1| - 2e-42 143.8 0.0 6.9e-42 142.0 0.0 1.9 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.16 gi|330509011|ref|YP_004385439.1| - 4.1e-05 23.4 1.2 0.00023 21.0 0.1 2.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.10 gi|330509011|ref|YP_004385439.1| - 0.00011 22.0 4.6 0.00014 21.7 0.3 3.0 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|330509011|ref|YP_004385439.1| - 0.0013 18.1 0.1 0.0054 16.1 0.0 2.1 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|330509011|ref|YP_004385439.1| - 0.0091 16.1 0.0 0.03 14.4 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACT PF01842.20 gi|330509011|ref|YP_004385439.1| - 0.013 14.9 0.0 0.059 12.8 0.0 2.1 1 0 0 1 1 1 0 ACT domain NAD_binding_7 PF13241.1 gi|330509011|ref|YP_004385439.1| - 0.1 12.8 0.7 0.67 10.2 0.1 2.7 3 0 0 3 3 3 0 Putative NAD(P)-binding FMN_red PF03358.10 gi|330509012|ref|YP_004385440.1| - 3.2e-21 75.4 0.0 4.7e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|330509012|ref|YP_004385440.1| - 5.7e-13 48.8 0.0 1e-12 47.9 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|330509012|ref|YP_004385440.1| - 0.05 13.6 0.0 0.34 10.8 0.0 2.1 2 0 0 2 2 2 0 Flavodoxin domain NYN PF01936.13 gi|330509013|ref|YP_004385441.1| - 1.9e-17 63.9 0.0 2.3e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF911 PF06023.7 gi|330509014|ref|YP_004385442.1| - 3.7e-61 206.8 0.0 1.1e-60 205.3 0.0 1.6 1 1 0 1 1 1 1 Archaeal protein of unknown function (DUF911) PDDEXK_1 PF12705.2 gi|330509014|ref|YP_004385442.1| - 6.4e-06 25.7 0.0 1.8e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|330509015|ref|YP_004385443.1| - 1.4e-21 77.1 0.3 2e-21 76.5 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|330509015|ref|YP_004385443.1| - 1.1e-20 74.1 0.6 6.8e-18 64.9 0.2 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|330509015|ref|YP_004385443.1| - 6.5e-05 22.2 0.1 0.00036 19.8 0.0 1.8 1 1 1 2 2 2 1 Archaeal protein of unknown function (DUF911) DUF2800 PF10926.3 gi|330509015|ref|YP_004385443.1| - 0.027 13.5 0.0 0.037 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) CRISPR_Cas2 PF09827.4 gi|330509016|ref|YP_004385444.1| - 5.9e-20 71.1 0.1 8.5e-20 70.6 0.1 1.3 1 1 0 1 1 1 1 CRISPR associated protein Cas2 zf-A20 PF01754.11 gi|330509016|ref|YP_004385444.1| - 0.022 14.3 0.5 0.031 13.8 0.3 1.2 1 0 0 1 1 1 0 A20-like zinc finger ADK PF00406.17 gi|330509016|ref|YP_004385444.1| - 0.13 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Adenylate kinase Cas_Cas1 PF01867.11 gi|330509017|ref|YP_004385445.1| - 3e-74 249.6 0.0 4.7e-74 248.9 0.0 1.3 2 0 0 2 2 2 1 CRISPR associated protein Cas1 DEAD PF00270.24 gi|330509018|ref|YP_004385446.1| - 6.6e-18 64.7 0.0 5.9e-16 58.4 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|330509018|ref|YP_004385446.1| - 2.1e-06 27.5 0.1 1.2e-05 25.0 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|330509018|ref|YP_004385446.1| - 5.2e-06 26.4 0.2 0.00015 21.6 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|330509018|ref|YP_004385446.1| - 0.0087 14.8 0.0 0.018 13.8 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain Lip_A_acyltrans PF03279.8 gi|330509018|ref|YP_004385446.1| - 0.025 13.4 0.1 0.066 12.0 0.0 1.7 2 0 0 2 2 2 0 Bacterial lipid A biosynthesis acyltransferase PhoH PF02562.11 gi|330509018|ref|YP_004385446.1| - 0.11 11.6 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DEDD_Tnp_IS110 PF01548.12 gi|330509020|ref|YP_004385448.1| - 3.2e-25 88.4 0.1 8.7e-25 87.0 0.0 1.8 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.11 gi|330509020|ref|YP_004385448.1| - 1.1e-24 86.3 0.0 2.4e-24 85.2 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family YfkB PF08756.5 gi|330509020|ref|YP_004385448.1| - 0.028 13.9 0.0 0.08 12.5 0.0 1.8 1 0 0 1 1 1 0 YfkB-like domain DDE_Tnp_IS1 PF03400.8 gi|330509021|ref|YP_004385449.1| - 0.0019 18.3 0.0 0.0031 17.6 0.0 1.3 1 0 0 1 1 1 1 IS1 transposase DUF3049 PF11250.3 gi|330509021|ref|YP_004385449.1| - 0.019 14.7 1.5 1.1 9.1 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3049) zf-BED PF02892.10 gi|330509022|ref|YP_004385450.1| - 0.014 15.1 0.5 0.039 13.7 0.4 1.8 1 0 0 1 1 1 0 BED zinc finger DUF433 PF04255.9 gi|330509022|ref|YP_004385450.1| - 0.032 13.6 0.5 0.14 11.5 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF433) Zn_Tnp_IS1 PF03811.8 gi|330509022|ref|YP_004385450.1| - 0.053 13.0 1.5 0.087 12.3 1.0 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_40 PF14493.1 gi|330509022|ref|YP_004385450.1| - 0.079 13.1 0.2 0.097 12.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|330509022|ref|YP_004385450.1| - 0.088 12.4 0.1 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain TruB-C_2 PF09157.6 gi|330509024|ref|YP_004385452.1| - 0.52 10.2 5.1 33 4.4 0.0 4.4 5 0 0 5 5 5 0 Pseudouridine synthase II TruB, C-terminal Baculo_RING PF05883.6 gi|330509024|ref|YP_004385452.1| - 0.64 9.8 5.0 44 3.9 0.0 4.4 4 1 1 5 5 5 0 Baculovirus U-box/Ring-like domain HTH_Tnp_1 PF01527.15 gi|330509025|ref|YP_004385453.1| - 9.6e-12 44.6 0.1 1.3e-11 44.2 0.1 1.4 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|330509025|ref|YP_004385453.1| - 0.00019 20.9 0.0 0.00041 19.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330509025|ref|YP_004385453.1| - 0.0016 18.3 0.0 0.0033 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|330509025|ref|YP_004385453.1| - 0.0021 18.1 0.1 0.0026 17.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|330509025|ref|YP_004385453.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain GnsAB PF08178.6 gi|330509025|ref|YP_004385453.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 GnsA/GnsB family rve PF00665.21 gi|330509026|ref|YP_004385454.1| - 1.4e-23 83.2 0.0 2.2e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330509026|ref|YP_004385454.1| - 1.6e-18 65.9 0.2 3.6e-18 64.8 0.2 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.1 gi|330509026|ref|YP_004385454.1| - 4.1e-17 61.9 0.3 1.5e-16 60.1 0.1 1.9 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.1 gi|330509026|ref|YP_004385454.1| - 3.9e-09 36.4 2.3 6.8e-09 35.6 1.1 1.8 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.1 gi|330509026|ref|YP_004385454.1| - 1.3e-06 28.4 0.4 2.1e-06 27.7 0.3 1.3 1 0 0 1 1 1 1 DDE domain HTH_Tnp_Tc3_2 PF01498.13 gi|330509026|ref|YP_004385454.1| - 0.14 12.2 0.4 0.44 10.6 0.0 1.9 2 0 0 2 2 2 0 Transposase Transposase_mut PF00872.13 gi|330509028|ref|YP_004385456.1| - 1.3e-104 349.7 1.1 1.6e-104 349.5 0.7 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|330509028|ref|YP_004385456.1| - 2.4e-14 53.2 0.1 6.6e-14 51.8 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.12 gi|330509028|ref|YP_004385456.1| - 3.5e-05 23.5 0.7 0.0016 18.1 0.0 2.2 1 1 1 2 2 2 2 Transposase Romo1 PF10247.4 gi|330509030|ref|YP_004385458.1| - 1.5 9.0 5.1 64 3.8 0.2 3.1 2 1 1 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 DUF1418 PF07214.7 gi|330509033|ref|YP_004385461.1| - 0.12 12.0 0.0 0.74 9.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1418) Tmemb_14 PF03647.8 gi|330509034|ref|YP_004385462.1| - 0.1 13.0 0.3 0.16 12.3 0.1 1.4 2 0 0 2 2 2 0 Transmembrane proteins 14C DUF2273 PF10031.4 gi|330509034|ref|YP_004385462.1| - 4.6 6.9 6.7 18 5.0 0.2 2.9 3 0 0 3 3 3 0 Small integral membrane protein (DUF2273) UPF0150 PF03681.10 gi|330509035|ref|YP_004385463.1| - 4.3e-13 48.6 0.2 5.8e-13 48.2 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) NTase_sub_bind PF08780.6 gi|330509035|ref|YP_004385463.1| - 0.13 11.9 0.1 0.15 11.8 0.1 1.0 1 0 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like YcfA PF07927.7 gi|330509036|ref|YP_004385464.1| - 6.1e-12 45.2 0.0 7.3e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 YcfA-like protein DUF2276 PF10040.4 gi|330509037|ref|YP_004385465.1| - 3.1e-11 43.5 0.1 5e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) Pentapeptide PF00805.17 gi|330509039|ref|YP_004385467.1| - 3e-73 240.2 47.7 1.7e-11 43.0 1.2 10.5 3 2 8 11 11 11 10 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|330509039|ref|YP_004385467.1| - 7.1e-41 137.8 0.0 4.8e-09 35.9 0.0 5.3 1 1 4 5 5 5 5 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|330509039|ref|YP_004385467.1| - 6.5e-30 102.7 0.0 0.0015 18.3 0.0 8.1 2 1 7 9 9 9 8 Pentapeptide repeats (9 copies) CfAFP PF05264.6 gi|330509039|ref|YP_004385467.1| - 3.5e-08 33.3 0.0 0.0023 17.7 0.0 3.5 1 1 3 4 4 4 2 Choristoneura fumiferana antifreeze protein (CfAFP) Pentapeptide PF00805.17 gi|330509040|ref|YP_004385468.1| - 2.3e-89 291.6 102.6 1.9e-10 39.7 2.2 15.3 4 3 11 18 18 18 17 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|330509040|ref|YP_004385468.1| - 4e-57 189.9 18.7 5.4e-11 42.1 1.3 8.4 1 1 6 8 8 8 8 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|330509040|ref|YP_004385468.1| - 5.5e-48 160.6 11.3 0.00013 21.7 1.3 12.4 2 2 10 13 13 13 12 Pentapeptide repeats (9 copies) ABC_sub_bind PF04392.7 gi|330509040|ref|YP_004385468.1| - 1.7e-09 37.0 0.0 3.3e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter substrate binding protein CfAFP PF05264.6 gi|330509040|ref|YP_004385468.1| - 8.8e-07 28.7 0.0 0.23 11.2 0.0 4.4 1 1 2 5 5 5 3 Choristoneura fumiferana antifreeze protein (CfAFP) DUF4179 PF13786.1 gi|330509041|ref|YP_004385469.1| - 0.067 13.4 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) DUF11 PF01345.13 gi|330509042|ref|YP_004385470.1| - 1.5e-32 111.4 1.8 2e-06 27.7 0.0 5.6 5 0 0 5 5 5 5 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|330509042|ref|YP_004385470.1| - 0.0011 18.1 0.1 2.8 7.0 0.0 3.5 2 1 1 3 3 3 2 Translocon-associated protein beta (TRAPB) Wzt_C PF14524.1 gi|330509043|ref|YP_004385471.1| - 0.095 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Wzt C-terminal domain DDE_Tnp_2 PF04693.7 gi|330509045|ref|YP_004385473.1| - 9.8e-13 47.7 6.1 3.1e-11 42.8 4.2 2.2 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_5 PF13546.1 gi|330509045|ref|YP_004385473.1| - 6.2e-12 44.9 0.0 1.9e-11 43.3 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|330509045|ref|YP_004385473.1| - 4.4e-09 36.1 2.9 7.9e-09 35.3 1.8 1.6 1 1 0 1 1 1 1 Transposase DDE domain Colicin_M PF14859.1 gi|330509045|ref|YP_004385473.1| - 0.11 11.3 0.2 0.18 10.6 0.2 1.3 1 0 0 1 1 1 0 Colicin M MULE PF10551.4 gi|330509046|ref|YP_004385474.1| - 3.2e-08 33.6 0.0 8.8e-08 32.2 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|330509046|ref|YP_004385474.1| - 6.6e-07 28.8 1.0 8.8e-06 25.1 0.7 2.0 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|330509046|ref|YP_004385474.1| - 0.012 15.7 0.1 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain DZR PF12773.2 gi|330509046|ref|YP_004385474.1| - 0.026 14.3 2.1 0.059 13.1 1.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|330509046|ref|YP_004385474.1| - 0.056 13.7 3.1 0.12 12.6 0.8 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Terminase_GpA PF05876.7 gi|330509046|ref|YP_004385474.1| - 0.35 9.1 1.3 5.3 5.2 0.2 2.1 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) zf-ISL3 PF14690.1 gi|330509046|ref|YP_004385474.1| - 1.4 8.9 3.8 1.4 9.0 0.7 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|330509046|ref|YP_004385474.1| - 1.6 8.0 5.8 12 5.2 1.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF4277 PF14104.1 gi|330509047|ref|YP_004385475.1| - 1e-20 74.0 0.0 1.1e-20 73.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) Fe-S_biosyn PF01521.15 gi|330509048|ref|YP_004385476.1| - 4.3e-08 33.0 0.0 6.5e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis XPG_I PF00867.13 gi|330509049|ref|YP_004385477.1| - 3.9e-25 87.7 0.0 6.2e-25 87.0 0.0 1.3 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|330509049|ref|YP_004385477.1| - 1.3e-17 63.8 0.0 2e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|330509049|ref|YP_004385477.1| - 0.00036 20.7 0.0 0.00071 19.7 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.1 gi|330509049|ref|YP_004385477.1| - 0.27 11.4 1.5 0.47 10.6 0.2 2.2 2 1 0 2 2 2 0 Helix-hairpin-helix domain Diphthamide_syn PF01866.12 gi|330509050|ref|YP_004385478.1| - 4e-91 305.4 0.0 4.5e-91 305.2 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Met_10 PF02475.11 gi|330509051|ref|YP_004385479.1| - 3.7e-59 199.6 0.0 5.1e-59 199.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|330509051|ref|YP_004385479.1| - 2.4e-10 40.2 0.0 4.5e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330509051|ref|YP_004385479.1| - 1e-09 38.4 0.1 1.9e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330509051|ref|YP_004385479.1| - 1.9e-09 38.0 0.0 4.8e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330509051|ref|YP_004385479.1| - 1.4e-08 34.3 0.0 2.3e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|330509051|ref|YP_004385479.1| - 3.1e-07 29.6 0.0 4.7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.5 gi|330509051|ref|YP_004385479.1| - 1.4e-06 27.9 0.0 2.1e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.8 gi|330509051|ref|YP_004385479.1| - 6.6e-06 25.4 0.0 1.2e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TRM PF02005.11 gi|330509051|ref|YP_004385479.1| - 1.6e-05 24.0 0.0 2e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.10 gi|330509051|ref|YP_004385479.1| - 7.9e-05 22.1 0.0 0.00013 21.4 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.6 gi|330509051|ref|YP_004385479.1| - 0.00046 18.9 0.0 0.00071 18.3 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase UPF0020 PF01170.13 gi|330509051|ref|YP_004385479.1| - 0.0044 16.6 0.0 0.0068 16.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.12 gi|330509051|ref|YP_004385479.1| - 0.025 13.6 0.0 0.039 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltrans_SAM PF10672.4 gi|330509051|ref|YP_004385479.1| - 0.03 13.1 0.0 0.044 12.6 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase DNA_methylase PF00145.12 gi|330509051|ref|YP_004385479.1| - 0.082 12.0 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase TBP PF00352.16 gi|330509052|ref|YP_004385480.1| - 8.6e-61 201.3 0.9 1.1e-29 101.5 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|330509052|ref|YP_004385480.1| - 1.7e-07 31.2 0.2 0.013 15.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3252 PF11623.3 gi|330509052|ref|YP_004385480.1| - 0.061 12.7 0.1 13 5.3 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3252) CENP-F_C_Rb_bdg PF10490.4 gi|330509052|ref|YP_004385480.1| - 0.25 10.7 0.8 2.2 7.6 0.1 2.3 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 CARDB PF07705.6 gi|330509053|ref|YP_004385481.1| - 0.0029 17.6 0.0 0.0063 16.5 0.0 1.6 1 0 0 1 1 1 1 CARDB TspO_MBR PF03073.10 gi|330509055|ref|YP_004385483.1| - 2.1e-49 166.8 20.9 2.4e-49 166.6 14.5 1.0 1 0 0 1 1 1 1 TspO/MBR family DUF2839 PF10999.3 gi|330509055|ref|YP_004385483.1| - 3.7 7.6 6.0 0.65 10.0 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2839) Zn-ribbon_8 PF09723.5 gi|330509056|ref|YP_004385484.1| - 0.0056 16.6 1.8 0.0081 16.0 1.2 1.2 1 0 0 1 1 1 1 Zinc ribbon domain DUF4428 PF14471.1 gi|330509056|ref|YP_004385484.1| - 0.042 13.5 2.3 0.079 12.7 1.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) zf-C3HC4_3 PF13920.1 gi|330509056|ref|YP_004385484.1| - 0.045 13.4 0.5 0.063 12.9 0.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-dskA_traR PF01258.12 gi|330509056|ref|YP_004385484.1| - 0.77 9.5 4.2 4 7.2 2.9 2.1 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger ABC_tran PF00005.22 gi|330509057|ref|YP_004385485.1| - 2.1e-59 199.7 0.2 1.4e-29 103.0 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|330509057|ref|YP_004385485.1| - 6.1e-26 90.5 0.0 7.9e-19 67.7 0.1 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|330509057|ref|YP_004385485.1| - 1.3e-22 81.1 0.5 5.7e-06 26.5 0.0 4.1 4 0 0 4 4 4 4 AAA domain SMC_N PF02463.14 gi|330509057|ref|YP_004385485.1| - 1.3e-12 47.3 1.2 7.3e-05 22.0 0.0 3.4 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|330509057|ref|YP_004385485.1| - 5.4e-10 39.5 2.7 0.00061 19.9 0.2 4.1 3 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|330509057|ref|YP_004385485.1| - 8.1e-08 31.6 2.0 0.0058 16.1 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|330509057|ref|YP_004385485.1| - 1.3e-06 27.9 0.0 0.035 13.5 0.0 3.0 3 0 0 3 3 2 2 AAA domain NACHT PF05729.7 gi|330509057|ref|YP_004385485.1| - 4.4e-06 26.4 0.1 0.013 15.1 0.0 2.6 2 0 0 2 2 2 2 NACHT domain DUF258 PF03193.11 gi|330509057|ref|YP_004385485.1| - 4.9e-06 25.8 0.8 0.026 13.7 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|330509057|ref|YP_004385485.1| - 7.9e-06 26.1 0.0 0.087 13.1 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|330509057|ref|YP_004385485.1| - 1.1e-05 25.5 7.5 0.0022 18.0 0.4 3.0 2 2 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|330509057|ref|YP_004385485.1| - 1.4e-05 25.5 0.0 0.092 13.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|330509057|ref|YP_004385485.1| - 1.8e-05 25.5 0.0 0.066 14.0 0.0 3.2 3 0 0 3 3 2 1 AAA domain AAA_15 PF13175.1 gi|330509057|ref|YP_004385485.1| - 2.9e-05 23.3 0.0 1.4 7.8 0.0 4.0 4 0 0 4 4 4 1 AAA ATPase domain AAA_10 PF12846.2 gi|330509057|ref|YP_004385485.1| - 4.1e-05 23.1 6.2 0.085 12.2 0.1 3.8 2 2 1 4 4 4 2 AAA-like domain SbcCD_C PF13558.1 gi|330509057|ref|YP_004385485.1| - 5.3e-05 23.0 2.0 0.23 11.3 0.4 3.9 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|330509057|ref|YP_004385485.1| - 8e-05 22.3 0.8 0.026 14.2 0.1 2.6 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|330509057|ref|YP_004385485.1| - 0.00037 20.3 0.0 0.19 11.6 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_13 PF13166.1 gi|330509057|ref|YP_004385485.1| - 0.00038 19.0 0.1 0.35 9.2 0.0 2.7 4 0 0 4 4 3 2 AAA domain FtsK_SpoIIIE PF01580.13 gi|330509057|ref|YP_004385485.1| - 0.00043 19.8 0.8 0.36 10.2 0.1 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|330509057|ref|YP_004385485.1| - 0.00059 19.3 3.7 1.3 8.3 0.0 3.7 4 0 0 4 4 4 2 IstB-like ATP binding protein DUF87 PF01935.12 gi|330509057|ref|YP_004385485.1| - 0.002 17.9 1.1 1.8 8.3 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function DUF87 AAA_30 PF13604.1 gi|330509057|ref|YP_004385485.1| - 0.0023 17.5 0.4 0.24 10.9 0.0 2.7 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|330509057|ref|YP_004385485.1| - 0.0032 16.6 0.1 0.4 9.8 0.0 2.7 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|330509057|ref|YP_004385485.1| - 0.0034 17.3 0.5 1.7 8.6 0.0 2.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase DUF2075 PF09848.4 gi|330509057|ref|YP_004385485.1| - 0.004 16.1 0.0 0.39 9.6 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.9 gi|330509057|ref|YP_004385485.1| - 0.006 16.3 0.5 1.2 8.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) KaiC PF06745.8 gi|330509057|ref|YP_004385485.1| - 0.0085 15.2 0.6 1.1 8.3 0.0 2.3 2 0 0 2 2 2 1 KaiC PRK PF00485.13 gi|330509057|ref|YP_004385485.1| - 0.011 15.2 0.1 1.3 8.5 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.24 gi|330509057|ref|YP_004385485.1| - 0.011 15.9 0.0 0.87 9.7 0.0 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|330509057|ref|YP_004385485.1| - 0.013 15.0 0.0 0.67 9.4 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.10 gi|330509057|ref|YP_004385485.1| - 0.014 15.1 1.0 1.4 8.5 0.0 2.8 3 0 0 3 3 3 0 NTPase AAA_19 PF13245.1 gi|330509057|ref|YP_004385485.1| - 0.017 14.8 1.0 1.6 8.4 0.0 3.3 3 0 0 3 3 3 0 Part of AAA domain NB-ARC PF00931.17 gi|330509057|ref|YP_004385485.1| - 0.022 13.6 0.8 0.56 9.0 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain Miro PF08477.8 gi|330509057|ref|YP_004385485.1| - 0.024 15.1 1.3 1.5 9.2 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein APS_kinase PF01583.15 gi|330509057|ref|YP_004385485.1| - 0.024 14.2 0.4 2.9 7.5 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase DBI_PRT PF02277.12 gi|330509057|ref|YP_004385485.1| - 0.025 13.6 0.1 2.2 7.3 0.0 2.5 2 0 0 2 2 2 0 Phosphoribosyltransferase Sigma54_activat PF00158.21 gi|330509057|ref|YP_004385485.1| - 0.033 13.6 1.2 1.4 8.3 0.0 3.0 3 0 0 3 3 3 0 Sigma-54 interaction domain UPF0079 PF02367.12 gi|330509057|ref|YP_004385485.1| - 0.035 13.7 1.6 0.85 9.2 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 GTP_EFTU PF00009.22 gi|330509057|ref|YP_004385485.1| - 0.037 13.4 0.0 4.9 6.5 0.0 2.4 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain RNA_helicase PF00910.17 gi|330509057|ref|YP_004385485.1| - 0.039 14.1 0.4 3.1 7.9 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Septin PF00735.13 gi|330509057|ref|YP_004385485.1| - 0.047 12.6 0.6 0.8 8.6 0.0 2.1 2 0 0 2 2 2 0 Septin Zeta_toxin PF06414.7 gi|330509057|ref|YP_004385485.1| - 0.052 12.6 0.1 1.9 7.5 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin Pox_A32 PF04665.7 gi|330509057|ref|YP_004385485.1| - 0.056 12.7 1.1 3.2 6.9 0.0 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein DUF3987 PF13148.1 gi|330509057|ref|YP_004385485.1| - 0.082 11.4 0.4 1.2 7.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) PduV-EutP PF10662.4 gi|330509057|ref|YP_004385485.1| - 0.088 12.2 1.6 1 8.8 0.1 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Myosin_head PF00063.16 gi|330509057|ref|YP_004385485.1| - 0.098 10.6 0.0 5.5 4.8 0.0 2.1 2 0 0 2 2 2 0 Myosin head (motor domain) AAA_24 PF13479.1 gi|330509057|ref|YP_004385485.1| - 0.2 11.2 1.3 13 5.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|330509057|ref|YP_004385485.1| - 0.21 10.4 2.6 0.52 9.1 0.0 2.5 3 0 0 3 3 2 0 Type II/IV secretion system protein CbiA PF01656.18 gi|330509057|ref|YP_004385485.1| - 0.22 10.8 6.3 4.6 6.6 0.1 3.0 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain ATP_bind_1 PF03029.12 gi|330509057|ref|YP_004385485.1| - 1 8.8 3.6 1.2 8.6 0.2 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein BPD_transp_1 PF00528.17 gi|330509058|ref|YP_004385486.1| - 4e-19 68.8 12.0 4e-19 68.8 8.3 1.9 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|330509058|ref|YP_004385486.1| - 1.6e-10 40.2 4.0 4.5e-09 35.5 0.0 3.5 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|330509059|ref|YP_004385487.1| - 3.9e-34 117.7 7.8 3.9e-34 117.7 5.4 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0066 PF01980.11 gi|330509060|ref|YP_004385488.1| - 5e-39 132.9 0.0 5.8e-39 132.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 SBP_bac_5 PF00496.17 gi|330509061|ref|YP_004385489.1| - 2.7e-73 246.9 2.2 2.7e-73 246.9 1.5 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Nitrate_red_gam PF02665.9 gi|330509063|ref|YP_004385491.1| - 0.00022 20.6 0.6 0.00022 20.6 0.4 3.1 2 1 2 4 4 4 2 Nitrate reductase gamma subunit PsbN PF02468.10 gi|330509063|ref|YP_004385491.1| - 0.65 9.6 3.9 0.87 9.2 0.2 2.6 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) CCG PF02754.11 gi|330509064|ref|YP_004385492.1| - 4.7e-30 103.4 9.7 2e-15 56.5 0.7 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|330509064|ref|YP_004385492.1| - 2.7e-08 33.7 4.5 2.7e-08 33.7 3.1 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330509064|ref|YP_004385492.1| - 3.5e-07 30.4 4.7 3.5e-07 30.4 3.2 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330509064|ref|YP_004385492.1| - 4e-06 27.1 11.1 0.053 13.9 0.1 4.4 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330509064|ref|YP_004385492.1| - 8.9e-06 25.9 7.0 8.9e-06 25.9 4.8 2.6 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330509064|ref|YP_004385492.1| - 2e-05 24.7 5.6 2e-05 24.7 3.9 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330509064|ref|YP_004385492.1| - 8.4e-05 22.2 7.1 8.4e-05 22.2 4.9 2.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330509064|ref|YP_004385492.1| - 0.00018 22.1 6.4 0.00095 19.8 4.5 2.3 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|330509064|ref|YP_004385492.1| - 0.24 11.0 12.6 1.5 8.5 2.4 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain zf-PHD-like PF15446.1 gi|330509064|ref|YP_004385492.1| - 0.32 10.2 4.2 0.55 9.5 0.0 2.8 2 1 1 3 3 3 0 PHD/FYVE-zinc-finger like domain Fer4_21 PF14697.1 gi|330509064|ref|YP_004385492.1| - 0.57 10.0 10.3 2.7 7.9 0.3 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330509064|ref|YP_004385492.1| - 4.5 7.3 16.7 1.3 9.1 0.9 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain F420_ligase PF01996.11 gi|330509065|ref|YP_004385493.1| - 2e-68 229.9 0.0 2.5e-68 229.5 0.0 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.17 gi|330509065|ref|YP_004385493.1| - 1.9e-15 56.3 0.2 3.4e-15 55.5 0.2 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|330509065|ref|YP_004385493.1| - 1e-09 38.4 0.4 2.3e-09 37.2 0.3 1.5 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|330509065|ref|YP_004385493.1| - 0.076 12.3 2.5 2.9 7.2 0.2 2.2 1 1 1 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases Pterin_bind PF00809.17 gi|330509066|ref|YP_004385494.1| - 2.4e-44 151.2 0.0 3.8e-44 150.5 0.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme ABC2_membrane PF01061.19 gi|330509067|ref|YP_004385495.1| - 2e-11 43.4 28.9 3.1e-11 42.8 20.0 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330509067|ref|YP_004385495.1| - 0.74 8.7 35.4 0.93 8.4 24.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|330509068|ref|YP_004385496.1| - 1e-27 97.1 0.0 2e-27 96.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330509068|ref|YP_004385496.1| - 9.2e-16 58.6 3.3 7.9e-10 39.1 0.2 2.4 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|330509068|ref|YP_004385496.1| - 3.5e-05 23.2 0.1 6.5e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|330509068|ref|YP_004385496.1| - 5.9e-05 22.2 0.6 0.03 13.3 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|330509068|ref|YP_004385496.1| - 5.9e-05 23.4 0.2 0.0001 22.7 0.0 1.5 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|330509068|ref|YP_004385496.1| - 0.0032 17.3 0.0 0.0057 16.5 0.0 1.4 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|330509068|ref|YP_004385496.1| - 0.0046 17.0 0.5 0.12 12.5 0.3 2.4 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|330509068|ref|YP_004385496.1| - 0.024 13.3 0.0 0.065 11.9 0.0 1.6 2 0 0 2 2 2 0 ArgK protein AAA_16 PF13191.1 gi|330509068|ref|YP_004385496.1| - 0.027 14.4 0.1 0.07 13.1 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|330509068|ref|YP_004385496.1| - 0.03 14.0 0.1 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|330509068|ref|YP_004385496.1| - 0.032 13.6 0.3 1 8.7 0.0 2.6 3 1 0 3 3 3 0 AAA domain SMC_N PF02463.14 gi|330509068|ref|YP_004385496.1| - 0.042 13.0 0.1 1.2 8.3 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_5 PF07728.9 gi|330509068|ref|YP_004385496.1| - 0.054 13.2 0.0 0.17 11.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|330509068|ref|YP_004385496.1| - 0.062 13.2 0.0 1.9 8.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain CARDB PF07705.6 gi|330509069|ref|YP_004385497.1| - 0.00072 19.5 0.0 0.31 11.1 0.0 2.6 3 0 0 3 3 3 2 CARDB NPCBM_assoc PF10633.4 gi|330509069|ref|YP_004385497.1| - 0.057 13.4 0.0 15 5.6 0.0 2.5 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase ABC-3 PF00950.12 gi|330509070|ref|YP_004385498.1| - 5.5e-71 238.8 35.6 6.2e-71 238.7 24.7 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|330509070|ref|YP_004385498.1| - 6.4e-08 31.7 35.4 1.1e-07 31.0 24.5 1.4 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|330509071|ref|YP_004385499.1| - 7.3e-29 100.8 0.0 1.5e-28 99.8 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|330509071|ref|YP_004385499.1| - 3.5e-12 46.9 0.2 1.1e-09 38.7 0.2 2.1 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|330509071|ref|YP_004385499.1| - 0.00033 20.5 0.1 0.0097 15.8 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|330509071|ref|YP_004385499.1| - 0.003 17.0 0.0 0.0053 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|330509071|ref|YP_004385499.1| - 0.0037 16.5 0.0 0.51 9.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|330509071|ref|YP_004385499.1| - 0.005 15.9 0.1 0.38 9.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain ArgK PF03308.11 gi|330509071|ref|YP_004385499.1| - 0.0066 15.2 0.0 0.0095 14.7 0.0 1.2 1 0 0 1 1 1 1 ArgK protein MutS_V PF00488.16 gi|330509071|ref|YP_004385499.1| - 0.021 14.2 0.0 0.083 12.2 0.0 1.8 2 0 0 2 2 2 0 MutS domain V AAA_10 PF12846.2 gi|330509071|ref|YP_004385499.1| - 0.032 13.6 0.0 0.14 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain Pho86 PF11124.3 gi|330509071|ref|YP_004385499.1| - 0.047 12.6 0.0 0.065 12.2 0.0 1.1 1 0 0 1 1 1 0 Inorganic phosphate transporter Pho86 DUF258 PF03193.11 gi|330509071|ref|YP_004385499.1| - 0.088 11.9 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|330509071|ref|YP_004385499.1| - 0.098 12.7 0.1 2.9 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|330509071|ref|YP_004385499.1| - 0.11 12.7 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|330509071|ref|YP_004385499.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein TroA PF01297.12 gi|330509072|ref|YP_004385500.1| - 9.8e-77 257.6 0.0 1.2e-76 257.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family LPAM_1 PF08139.7 gi|330509072|ref|YP_004385500.1| - 0.19 11.9 3.3 0.54 10.5 2.3 1.8 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site PAD_porph PF04371.10 gi|330509075|ref|YP_004385503.1| - 1.9e-114 382.1 0.0 2.6e-114 381.6 0.0 1.2 1 0 0 1 1 1 1 Porphyromonas-type peptidyl-arginine deiminase CN_hydrolase PF00795.17 gi|330509075|ref|YP_004385503.1| - 1.2e-34 119.3 0.0 1.9e-34 118.6 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase PIN PF01850.16 gi|330509076|ref|YP_004385504.1| - 8.7e-09 35.7 0.1 9.8e-09 35.5 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.11 gi|330509077|ref|YP_004385505.1| - 2e-11 43.7 0.2 2.3e-11 43.5 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF3945 PF13101.1 gi|330509077|ref|YP_004385505.1| - 0.024 13.9 0.1 0.033 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) CitMHS PF03600.11 gi|330509078|ref|YP_004385506.1| - 3.3e-31 108.1 35.3 5.1e-31 107.5 18.8 2.1 1 1 1 2 2 2 2 Citrate transporter Aminotran_5 PF00266.14 gi|330509079|ref|YP_004385507.1| - 7.7e-91 304.5 0.0 9.2e-91 304.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|330509079|ref|YP_004385507.1| - 7.8e-08 31.8 0.0 1.1e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|330509079|ref|YP_004385507.1| - 8e-06 25.1 0.0 1.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family B12-binding PF02310.14 gi|330509079|ref|YP_004385507.1| - 0.016 15.0 0.0 0.076 12.8 0.0 2.1 1 1 1 2 2 2 0 B12 binding domain AroM PF07302.6 gi|330509079|ref|YP_004385507.1| - 0.022 14.1 0.0 0.037 13.3 0.0 1.3 1 0 0 1 1 1 0 AroM protein PsbH PF00737.15 gi|330509080|ref|YP_004385508.1| - 0.24 11.0 0.3 0.24 11.0 0.2 2.0 2 1 0 3 3 3 0 Photosystem II 10 kDa phosphoprotein DUF1201 PF06716.6 gi|330509080|ref|YP_004385508.1| - 3 7.7 4.8 1.1 9.1 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1201) IncA PF04156.9 gi|330509080|ref|YP_004385508.1| - 7 6.1 5.6 12 5.4 3.9 1.3 1 0 0 1 1 1 0 IncA protein ATP-grasp_3 PF02655.9 gi|330509081|ref|YP_004385509.1| - 3.2e-38 131.1 0.0 4.2e-38 130.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|330509081|ref|YP_004385509.1| - 2.3e-16 60.0 0.0 4.7e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|330509081|ref|YP_004385509.1| - 3.1e-10 39.6 0.0 0.0004 19.7 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.1 gi|330509081|ref|YP_004385509.1| - 2e-09 36.6 0.0 9.5e-06 24.5 0.0 2.3 1 1 1 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|330509081|ref|YP_004385509.1| - 9.1e-07 28.4 0.0 9.3e-06 25.1 0.0 2.2 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.1 gi|330509081|ref|YP_004385509.1| - 6.7e-06 25.3 0.0 0.0044 16.1 0.0 2.3 2 1 0 2 2 2 2 Sugar-transfer associated ATP-grasp RimK PF08443.6 gi|330509081|ref|YP_004385509.1| - 0.00044 19.7 0.0 0.0011 18.5 0.0 1.5 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|330509081|ref|YP_004385509.1| - 0.0056 16.0 0.0 0.7 9.2 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.14 gi|330509081|ref|YP_004385509.1| - 0.031 13.8 0.1 0.15 11.6 0.0 2.1 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Trm56 PF01994.11 gi|330509082|ref|YP_004385510.1| - 1.7e-50 169.8 0.0 2.1e-50 169.5 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 DHH PF01368.15 gi|330509083|ref|YP_004385511.1| - 1.1e-09 38.0 0.1 2e-09 37.2 0.1 1.4 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|330509083|ref|YP_004385511.1| - 3.1e-09 36.5 0.0 4.9e-08 32.7 0.1 2.8 4 0 0 4 4 4 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.14 gi|330509083|ref|YP_004385511.1| - 2.5e-06 27.4 12.4 2.5e-06 27.4 8.6 3.0 2 1 0 2 2 2 1 DnaJ central domain S1 PF00575.18 gi|330509083|ref|YP_004385511.1| - 2.7e-05 24.1 3.5 6.8e-05 22.8 0.3 2.9 3 1 0 3 3 3 1 S1 RNA binding domain DZR PF12773.2 gi|330509083|ref|YP_004385511.1| - 4.9 7.0 19.3 5.5e+03 -2.8 13.2 3.1 1 1 0 1 1 1 0 Double zinc ribbon TPR_12 PF13424.1 gi|330509084|ref|YP_004385512.1| - 3e-24 84.7 22.0 3.2e-09 36.6 0.7 5.0 2 2 1 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330509084|ref|YP_004385512.1| - 3.2e-14 51.8 4.8 0.0011 18.4 0.1 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509084|ref|YP_004385512.1| - 4.2e-13 48.0 6.1 0.0011 18.5 0.1 4.6 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330509084|ref|YP_004385512.1| - 1.8e-09 37.0 18.5 0.0042 16.6 0.2 4.9 3 1 1 4 4 4 4 TPR repeat TPR_2 PF07719.12 gi|330509084|ref|YP_004385512.1| - 4.2e-09 35.6 24.7 0.032 14.1 0.1 8.0 7 1 1 8 8 7 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330509084|ref|YP_004385512.1| - 2.7e-06 26.7 15.8 0.84 9.5 0.0 6.8 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509084|ref|YP_004385512.1| - 3e-05 24.5 39.0 0.03 15.0 3.1 7.8 4 2 2 6 6 6 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509084|ref|YP_004385512.1| - 6.9e-05 23.1 34.0 0.0076 16.5 1.3 6.9 6 1 1 7 7 7 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509084|ref|YP_004385512.1| - 0.00028 20.9 2.5 0.19 11.8 0.1 3.8 3 1 1 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 CHAT PF12770.2 gi|330509084|ref|YP_004385512.1| - 0.00062 18.9 0.0 0.0013 17.9 0.0 1.5 1 0 0 1 1 1 1 CHAT domain TPR_10 PF13374.1 gi|330509084|ref|YP_004385512.1| - 0.0011 18.8 20.3 0.13 12.2 0.1 6.5 6 0 0 6 6 5 2 Tetratricopeptide repeat AAA_16 PF13191.1 gi|330509084|ref|YP_004385512.1| - 0.0025 17.7 0.3 0.0025 17.7 0.2 2.5 2 1 0 2 2 2 1 AAA ATPase domain Apc5 PF12862.2 gi|330509084|ref|YP_004385512.1| - 0.0043 16.8 2.3 0.76 9.6 0.1 2.8 1 1 0 2 2 2 1 Anaphase-promoting complex subunit 5 AAA_10 PF12846.2 gi|330509084|ref|YP_004385512.1| - 0.013 14.9 0.6 0.044 13.2 0.1 2.0 2 0 0 2 2 2 0 AAA-like domain Coatomer_E PF04733.9 gi|330509084|ref|YP_004385512.1| - 0.018 14.2 7.0 0.072 12.2 2.0 2.6 1 1 0 2 2 2 0 Coatomer epsilon subunit TPR_17 PF13431.1 gi|330509084|ref|YP_004385512.1| - 0.02 15.0 2.6 1.6 9.1 0.0 4.4 4 0 0 4 4 3 0 Tetratricopeptide repeat NACHT PF05729.7 gi|330509084|ref|YP_004385512.1| - 0.036 13.7 0.1 0.87 9.2 0.0 2.9 2 1 0 2 2 2 0 NACHT domain TPR_14 PF13428.1 gi|330509084|ref|YP_004385512.1| - 0.038 14.6 34.1 0.42 11.3 0.5 8.6 5 3 3 8 8 8 0 Tetratricopeptide repeat Helicase_RecD PF05127.9 gi|330509084|ref|YP_004385512.1| - 0.072 12.7 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Helicase SNAP PF14938.1 gi|330509084|ref|YP_004385512.1| - 0.19 10.8 11.2 0.86 8.6 0.4 3.1 1 1 1 3 3 3 0 Soluble NSF attachment protein, SNAP RPN7 PF10602.4 gi|330509084|ref|YP_004385512.1| - 0.33 10.2 3.5 33 3.8 0.0 3.6 2 1 0 2 2 2 0 26S proteasome subunit RPN7 Peptidase_C1 PF00112.18 gi|330509085|ref|YP_004385513.1| - 3.4e-13 49.9 0.0 4.5e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 Papain family cysteine protease Inhibitor_I42 PF09394.5 gi|330509086|ref|YP_004385514.1| - 2.4e-19 69.4 0.1 2.6e-19 69.3 0.1 1.0 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 Ribosomal_S3Ae PF01015.13 gi|330509087|ref|YP_004385515.1| - 7.2e-71 237.5 3.4 7.9e-71 237.4 2.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family BiPBP_C PF06832.7 gi|330509088|ref|YP_004385516.1| - 0.002 18.0 0.0 0.0028 17.5 0.0 1.2 1 0 0 1 1 1 1 Penicillin-Binding Protein C-terminus Family Ibs_toxin PF13956.1 gi|330509088|ref|YP_004385516.1| - 0.17 11.7 0.4 0.17 11.7 0.3 2.2 3 0 0 3 3 3 0 Toxin Ibs, type I toxin-antitoxin system PNP_UDP_1 PF01048.15 gi|330509089|ref|YP_004385517.1| - 1.8e-36 125.3 0.1 2e-36 125.1 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily IF-2B PF01008.12 gi|330509090|ref|YP_004385518.1| - 2.1e-84 282.8 0.0 2.4e-84 282.6 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PBP_like_2 PF12849.2 gi|330509091|ref|YP_004385519.1| - 3.8e-35 121.7 3.2 2.1e-34 119.2 2.2 1.8 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|330509091|ref|YP_004385519.1| - 1.6e-18 66.3 0.0 2.1e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|330509091|ref|YP_004385519.1| - 0.00059 19.5 0.0 0.0093 15.6 0.0 2.2 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|330509091|ref|YP_004385519.1| - 0.021 14.1 0.0 0.031 13.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Glyco_hydro_108 PF05838.7 gi|330509091|ref|YP_004385519.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 1 0 1 1 1 0 Glycosyl hydrolase 108 E1-E2_ATPase PF00122.15 gi|330509092|ref|YP_004385520.1| - 1.1e-69 234.0 2.3 1.1e-69 234.0 1.6 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|330509092|ref|YP_004385520.1| - 5.6e-39 133.5 4.4 1.8e-38 131.8 3.0 1.9 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|330509092|ref|YP_004385520.1| - 2.7e-29 103.1 0.0 1.7e-28 100.4 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|330509092|ref|YP_004385520.1| - 1.6e-19 69.1 0.0 4.5e-19 67.6 0.0 1.9 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|330509092|ref|YP_004385520.1| - 1e-13 51.0 0.0 2.1e-13 50.0 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|330509092|ref|YP_004385520.1| - 2.8e-10 40.6 0.0 7.7e-10 39.2 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|330509092|ref|YP_004385520.1| - 2.8e-07 30.3 0.5 0.00013 21.6 0.4 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|330509092|ref|YP_004385520.1| - 0.063 13.4 0.0 0.15 12.2 0.0 1.6 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF137 PF02006.11 gi|330509093|ref|YP_004385521.1| - 2.5e-74 248.5 1.1 3.1e-74 248.2 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 TPP_enzyme_M PF00205.17 gi|330509093|ref|YP_004385521.1| - 0.033 13.9 1.5 0.16 11.7 0.1 2.3 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain GHMP_kinases_N PF00288.21 gi|330509094|ref|YP_004385522.1| - 5.9e-08 32.6 0.5 5.9e-08 32.6 0.3 2.1 2 1 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|330509094|ref|YP_004385522.1| - 0.036 14.2 1.7 0.13 12.5 0.0 2.3 2 0 0 2 2 2 0 GHMP kinases C terminal DFP PF04127.10 gi|330509095|ref|YP_004385523.1| - 2.7e-52 177.1 0.1 5.6e-52 176.0 0.0 1.6 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|330509095|ref|YP_004385523.1| - 6.3e-30 103.4 0.1 1.3e-29 102.4 0.1 1.6 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|330509095|ref|YP_004385523.1| - 1.8e-05 24.8 0.3 5.2e-05 23.3 0.2 1.9 1 1 0 1 1 1 1 NADH(P)-binding Pyr_redox PF00070.22 gi|330509095|ref|YP_004385523.1| - 0.0098 16.2 0.0 0.051 13.9 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_4 PF13439.1 gi|330509095|ref|YP_004385523.1| - 0.074 12.7 0.2 5 6.8 0.0 2.4 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Apolipoprotein PF01442.13 gi|330509096|ref|YP_004385524.1| - 2.4e-08 33.7 30.4 9.7e-06 25.2 11.4 3.6 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain DUF4164 PF13747.1 gi|330509096|ref|YP_004385524.1| - 7.8e-07 29.1 33.6 0.0011 19.1 2.8 4.8 2 1 1 4 4 4 2 Domain of unknown function (DUF4164) Baculo_PEP_C PF04513.7 gi|330509096|ref|YP_004385524.1| - 1.1e-05 25.2 24.5 0.016 15.0 1.8 5.2 1 1 4 6 6 6 4 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3584 PF12128.3 gi|330509096|ref|YP_004385524.1| - 0.00017 19.1 29.9 0.00017 19.1 20.7 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF3584) DUF3921 PF13060.1 gi|330509096|ref|YP_004385524.1| - 0.003 17.4 4.0 1.2 9.0 0.0 3.7 3 1 2 5 5 4 1 Protein of unknown function (DUF3921) FCH PF00611.18 gi|330509096|ref|YP_004385524.1| - 0.0032 17.6 2.3 0.0032 17.6 1.6 4.9 3 2 1 4 4 4 1 Fes/CIP4, and EFC/F-BAR homology domain WXG100 PF06013.7 gi|330509096|ref|YP_004385524.1| - 0.0048 16.8 20.6 2.2 8.3 0.6 6.8 2 1 5 7 7 7 2 Proteins of 100 residues with WXG WASH_WAHD PF11945.3 gi|330509096|ref|YP_004385524.1| - 0.0065 15.8 2.9 0.89 8.7 0.2 2.5 2 0 0 2 2 2 2 WAHD domain of WASH complex UPF0184 PF03670.8 gi|330509096|ref|YP_004385524.1| - 0.0069 16.5 33.4 0.014 15.5 1.1 6.0 1 1 3 6 6 5 2 Uncharacterised protein family (UPF0184) DUF4439 PF14530.1 gi|330509096|ref|YP_004385524.1| - 0.025 15.0 2.3 1.4 9.3 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4439) HSBP1 PF06825.7 gi|330509096|ref|YP_004385524.1| - 0.029 13.9 15.9 0.48 10.0 2.4 4.5 3 0 0 3 3 3 0 Heat shock factor binding protein 1 Ribosomal_S15 PF00312.17 gi|330509096|ref|YP_004385524.1| - 0.029 14.1 5.0 3.4 7.4 0.1 3.6 4 0 0 4 4 3 0 Ribosomal protein S15 DUF4055 PF13264.1 gi|330509096|ref|YP_004385524.1| - 0.036 14.1 4.3 14 5.7 0.0 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4055) ApoLp-III PF07464.6 gi|330509096|ref|YP_004385524.1| - 0.04 13.9 27.1 0.072 13.1 5.4 4.0 1 1 2 4 4 4 0 Apolipophorin-III precursor (apoLp-III) TMP_2 PF06791.8 gi|330509096|ref|YP_004385524.1| - 0.054 13.1 3.0 1.1 8.8 0.0 3.1 2 1 1 3 3 3 0 Prophage tail length tape measure protein PilJ PF13675.1 gi|330509096|ref|YP_004385524.1| - 0.061 13.6 20.8 1 9.7 2.2 4.5 1 1 2 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term YlqD PF11068.3 gi|330509096|ref|YP_004385524.1| - 0.1 12.6 36.2 2.6 8.1 1.4 5.3 1 1 5 6 6 6 0 YlqD protein Laminin_II PF06009.7 gi|330509096|ref|YP_004385524.1| - 0.14 11.9 25.2 0.37 10.5 0.2 4.7 1 1 4 5 5 5 0 Laminin Domain II DUF1484 PF07363.6 gi|330509096|ref|YP_004385524.1| - 0.16 12.3 2.8 17 5.7 0.1 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1484) SF-assemblin PF06705.6 gi|330509096|ref|YP_004385524.1| - 0.24 10.5 32.0 0.66 9.0 5.7 3.2 1 1 2 3 3 3 0 SF-assemblin/beta giardin FliJ PF02050.11 gi|330509096|ref|YP_004385524.1| - 0.38 10.8 34.6 0.14 12.2 1.8 5.1 1 1 2 4 4 4 0 Flagellar FliJ protein PMEI PF04043.10 gi|330509096|ref|YP_004385524.1| - 0.53 10.1 3.1 3.8 7.3 0.1 2.7 1 1 2 3 3 3 0 Plant invertase/pectin methylesterase inhibitor NPV_P10 PF05531.7 gi|330509096|ref|YP_004385524.1| - 0.57 10.4 19.3 2.3 8.5 0.7 5.7 2 1 4 6 6 5 0 Nucleopolyhedrovirus P10 protein ApoO PF09769.4 gi|330509096|ref|YP_004385524.1| - 0.69 9.6 7.9 9.4 5.9 0.3 4.2 1 1 3 4 4 4 0 Apolipoprotein O Tannase PF07519.6 gi|330509096|ref|YP_004385524.1| - 0.76 8.4 5.0 0.49 9.0 0.5 2.1 1 1 1 2 2 2 0 Tannase and feruloyl esterase DUF1664 PF07889.7 gi|330509096|ref|YP_004385524.1| - 1.5 8.6 25.4 1.4 8.7 2.6 4.9 2 1 4 6 6 6 0 Protein of unknown function (DUF1664) FUSC PF04632.7 gi|330509096|ref|YP_004385524.1| - 2 6.7 6.3 19 3.5 4.1 2.2 1 1 0 1 1 1 0 Fusaric acid resistance protein family DUF2729 PF10870.3 gi|330509096|ref|YP_004385524.1| - 2.7 7.8 4.5 32 4.3 0.2 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF2729) DUF1515 PF07439.6 gi|330509096|ref|YP_004385524.1| - 3.6 7.4 13.4 0.72 9.6 0.7 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF1515) DUF883 PF05957.8 gi|330509096|ref|YP_004385524.1| - 3.6 8.0 21.6 5.7 7.4 1.3 5.4 1 1 3 5 5 5 0 Bacterial protein of unknown function (DUF883) DUF842 PF05811.8 gi|330509096|ref|YP_004385524.1| - 4.4 6.7 12.6 4.3 6.8 0.5 3.6 2 1 2 4 4 4 0 Eukaryotic protein of unknown function (DUF842) HJURP_C PF12347.3 gi|330509096|ref|YP_004385524.1| - 4.5 6.9 8.4 13 5.4 0.2 3.2 3 0 0 3 3 3 0 Holliday junction regulator protein family C-terminal repeat Ima1_N PF09779.4 gi|330509096|ref|YP_004385524.1| - 6.2 7.3 8.3 31 5.0 1.1 2.8 1 1 1 2 2 2 0 Ima1 N-terminal domain Matrilin_ccoil PF10393.4 gi|330509096|ref|YP_004385524.1| - 6.4 6.2 9.9 9.8 5.6 0.2 4.3 4 2 2 6 6 5 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF4600 PF15372.1 gi|330509096|ref|YP_004385524.1| - 7.6 6.7 34.9 0.82 9.8 3.9 4.3 1 1 4 5 5 4 0 Domain of unknown function (DUF4600) Prominin PF05478.6 gi|330509096|ref|YP_004385524.1| - 8.6 3.7 23.5 1 6.8 0.8 2.6 1 1 2 3 3 3 0 Prominin M PF02370.11 gi|330509096|ref|YP_004385524.1| - 9.9 6.9 13.9 9.7 6.9 0.7 4.3 3 0 0 3 3 2 0 M protein repeat DEAD PF00270.24 gi|330509097|ref|YP_004385525.1| - 9.4e-17 61.0 0.0 1.7e-16 60.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|330509097|ref|YP_004385525.1| - 8.2e-10 38.4 0.0 2e-09 37.1 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DDE_Tnp_1 PF01609.16 gi|330509098|ref|YP_004385526.1| - 8.6e-07 28.7 0.8 3.1e-06 26.9 0.5 1.8 1 1 0 1 1 1 1 Transposase DDE domain TPR_2 PF07719.12 gi|330509099|ref|YP_004385527.1| - 3.3e-44 145.2 23.1 2.1e-06 27.1 0.0 11.9 12 0 0 12 12 12 8 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330509099|ref|YP_004385527.1| - 1.9e-43 144.3 18.5 1.3e-05 24.6 0.0 11.9 12 0 0 12 12 12 10 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330509099|ref|YP_004385527.1| - 1.8e-42 142.8 23.4 2.2e-09 36.8 0.8 7.6 5 2 2 8 8 8 7 TPR repeat TPR_16 PF13432.1 gi|330509099|ref|YP_004385527.1| - 7.8e-39 131.5 27.9 5.2e-10 39.7 0.5 8.1 3 2 7 10 10 9 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509099|ref|YP_004385527.1| - 1.7e-33 111.8 18.2 7.8e-06 25.3 0.0 11.9 12 0 0 12 12 12 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509099|ref|YP_004385527.1| - 4.5e-32 109.8 23.7 2e-08 34.0 0.2 6.9 4 2 2 7 7 7 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509099|ref|YP_004385527.1| - 3.7e-24 83.0 24.6 0.00031 21.1 0.3 9.9 3 2 7 10 10 10 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509099|ref|YP_004385527.1| - 5.1e-23 79.3 10.3 0.0044 17.1 0.0 10.6 9 1 2 11 11 10 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509099|ref|YP_004385527.1| - 6.4e-21 74.4 20.2 1.1e-06 28.8 0.1 7.0 5 2 3 8 8 7 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509099|ref|YP_004385527.1| - 7.1e-17 61.0 12.3 0.00028 20.6 0.1 6.1 3 3 3 6 6 6 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509099|ref|YP_004385527.1| - 1.2e-14 54.2 5.2 0.00048 20.2 0.0 5.7 2 2 4 6 6 6 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|330509099|ref|YP_004385527.1| - 2.3e-12 45.7 17.1 0.48 10.3 0.0 9.4 10 0 0 10 10 9 4 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330509099|ref|YP_004385527.1| - 1.6e-11 44.1 20.5 0.015 15.1 0.2 7.2 2 2 3 6 6 6 4 Domain of Unknown Function (DUF3856) TPR_6 PF13174.1 gi|330509099|ref|YP_004385527.1| - 2.3e-11 43.3 11.3 0.76 10.3 0.0 8.7 9 0 0 9 9 9 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|330509099|ref|YP_004385527.1| - 1.2e-10 40.8 9.0 0.0084 14.9 0.1 4.4 1 1 3 4 4 4 3 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|330509099|ref|YP_004385527.1| - 1.5e-07 30.7 19.9 0.014 14.4 2.9 6.0 2 2 3 5 5 5 4 Tetratricopeptide repeat TPR_21 PF09976.4 gi|330509099|ref|YP_004385527.1| - 6.8e-07 29.3 15.1 0.066 13.1 0.0 4.8 3 2 0 3 3 3 3 Tetratricopeptide repeat BTAD PF03704.12 gi|330509099|ref|YP_004385527.1| - 1.3e-06 28.7 12.4 0.072 13.3 0.3 5.6 4 2 1 5 5 5 2 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|330509099|ref|YP_004385527.1| - 4.3e-06 26.7 3.2 1.1 9.3 0.0 4.8 2 2 1 4 4 4 2 Tetratrico peptide repeat ChAPs PF09295.5 gi|330509099|ref|YP_004385527.1| - 1.6e-05 23.8 1.1 0.16 10.7 0.1 3.1 2 1 0 3 3 3 2 ChAPs (Chs5p-Arf1p-binding proteins) TPR_10 PF13374.1 gi|330509099|ref|YP_004385527.1| - 0.00027 20.7 26.9 0.12 12.3 0.0 8.0 8 0 0 8 8 8 1 Tetratricopeptide repeat DUF3808 PF10300.4 gi|330509099|ref|YP_004385527.1| - 0.016 13.8 1.3 0.018 13.6 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3808) Apc5 PF12862.2 gi|330509099|ref|YP_004385527.1| - 0.065 13.0 4.7 21 5.0 0.1 4.9 4 2 1 5 5 5 0 Anaphase-promoting complex subunit 5 TPR_4 PF07721.9 gi|330509099|ref|YP_004385527.1| - 0.12 12.8 0.1 0.12 12.8 0.1 6.8 7 0 0 7 7 5 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330509099|ref|YP_004385527.1| - 3.4 7.6 7.6 1.2 9.0 0.0 4.0 6 0 0 6 6 3 0 Fis1 C-terminal tetratricopeptide repeat DUF3775 PF12616.3 gi|330509099|ref|YP_004385527.1| - 9.1 6.1 8.9 4.2 7.2 0.0 4.3 6 1 0 6 6 4 0 Protein of unknown function (DUF3775) TPR_1 PF00515.23 gi|330509100|ref|YP_004385528.1| - 1.9e-54 179.1 18.6 1.2e-09 37.3 0.0 12.2 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330509100|ref|YP_004385528.1| - 2.6e-49 164.7 22.1 2e-09 36.9 0.1 7.8 3 2 2 7 7 7 6 TPR repeat TPR_2 PF07719.12 gi|330509100|ref|YP_004385528.1| - 5.8e-48 156.9 22.5 4.8e-08 32.3 0.0 12.0 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509100|ref|YP_004385528.1| - 5.2e-43 144.8 16.8 1e-09 38.7 0.1 8.0 5 3 2 8 8 8 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509100|ref|YP_004385528.1| - 2.5e-38 126.9 21.6 2.7e-05 23.6 0.0 11.7 11 1 1 12 12 12 7 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509100|ref|YP_004385528.1| - 1.5e-37 124.6 7.9 0.0014 18.6 0.0 10.9 10 1 1 11 11 10 8 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509100|ref|YP_004385528.1| - 4.4e-36 122.6 18.3 2.3e-10 40.2 0.1 6.4 3 1 5 8 8 7 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509100|ref|YP_004385528.1| - 3.8e-34 114.0 16.5 1.9e-05 24.9 0.1 11.1 5 3 6 11 11 11 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509100|ref|YP_004385528.1| - 6.8e-29 100.0 18.3 8.1e-06 26.0 0.0 7.2 3 2 5 8 8 8 8 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509100|ref|YP_004385528.1| - 1.6e-23 82.3 6.3 1.2e-07 31.4 0.1 6.6 2 2 4 7 7 7 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509100|ref|YP_004385528.1| - 2.5e-20 72.3 1.9 0.00094 19.2 0.1 5.0 2 2 2 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|330509100|ref|YP_004385528.1| - 2.1e-19 68.5 13.9 0.017 15.5 0.1 9.5 11 0 0 11 11 8 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330509100|ref|YP_004385528.1| - 2.1e-16 58.3 15.4 0.016 14.9 0.0 9.7 11 0 0 11 11 10 3 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330509100|ref|YP_004385528.1| - 1e-12 48.0 13.4 1.9e-05 24.4 0.4 6.4 1 1 4 6 6 6 3 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|330509100|ref|YP_004385528.1| - 2.6e-10 39.6 11.6 0.0034 16.2 0.4 5.7 1 1 5 7 7 7 5 NMDA receptor-regulated protein 1 TPR_10 PF13374.1 gi|330509100|ref|YP_004385528.1| - 4.4e-09 35.9 14.9 0.19 11.6 0.1 8.6 9 1 0 9 9 9 2 Tetratricopeptide repeat SNAP PF14938.1 gi|330509100|ref|YP_004385528.1| - 1.5e-08 34.1 8.3 1.3e-06 27.7 0.3 4.0 1 1 2 4 4 4 2 Soluble NSF attachment protein, SNAP TPR_21 PF09976.4 gi|330509100|ref|YP_004385528.1| - 2.6e-08 33.8 13.5 0.019 14.9 0.1 5.2 4 1 1 5 5 5 3 Tetratricopeptide repeat BTAD PF03704.12 gi|330509100|ref|YP_004385528.1| - 1.2e-06 28.9 6.1 3.7 7.8 0.0 6.5 4 2 4 8 8 8 1 Bacterial transcriptional activator domain MIT PF04212.13 gi|330509100|ref|YP_004385528.1| - 5.6e-06 26.1 19.0 3.9 7.4 0.0 8.2 6 4 3 9 9 9 1 MIT (microtubule interacting and transport) domain Alkyl_sulf_dimr PF14863.1 gi|330509100|ref|YP_004385528.1| - 1.1e-05 25.6 2.5 0.18 12.0 0.1 4.0 3 2 1 4 4 3 2 Alkyl sulfatase dimerisation TPR_5 PF12688.2 gi|330509100|ref|YP_004385528.1| - 2.5e-05 24.2 2.5 0.51 10.3 0.0 5.0 2 2 1 5 5 5 1 Tetratrico peptide repeat TPR_20 PF14561.1 gi|330509100|ref|YP_004385528.1| - 0.00014 21.9 11.2 1.3 9.2 0.2 6.5 3 2 5 8 8 8 1 Tetratricopeptide repeat PPR PF01535.15 gi|330509100|ref|YP_004385528.1| - 0.0002 21.1 4.6 37 4.5 0.0 7.2 9 0 0 9 9 6 0 PPR repeat PPTA PF01239.17 gi|330509100|ref|YP_004385528.1| - 0.00027 20.1 3.9 0.36 10.2 0.0 5.3 6 0 0 6 6 5 1 Protein prenyltransferase alpha subunit repeat TPR_4 PF07721.9 gi|330509100|ref|YP_004385528.1| - 0.00044 20.4 21.9 4.3 8.0 0.0 8.3 10 0 0 10 10 7 0 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|330509100|ref|YP_004385528.1| - 0.00048 19.4 7.1 14 4.7 0.0 5.4 1 1 4 6 6 6 0 Coatomer epsilon subunit Fis1_TPR_C PF14853.1 gi|330509100|ref|YP_004385528.1| - 0.0014 18.4 1.6 11 6.0 0.0 5.6 7 0 0 7 7 5 0 Fis1 C-terminal tetratricopeptide repeat DUF2225 PF09986.4 gi|330509100|ref|YP_004385528.1| - 0.0023 17.4 6.3 0.04 13.3 0.5 3.4 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_3 PF07720.7 gi|330509100|ref|YP_004385528.1| - 0.0047 16.7 2.5 0.72 9.7 0.0 4.8 5 0 0 5 5 5 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|330509100|ref|YP_004385528.1| - 0.011 15.5 2.4 3.9 7.3 0.2 5.0 7 1 1 8 8 4 0 Anaphase-promoting complex subunit 5 SPOB_a PF14689.1 gi|330509100|ref|YP_004385528.1| - 0.067 12.7 2.9 23 4.6 0.0 4.6 5 0 0 5 5 4 0 Sensor_kinase_SpoOB-type, alpha-helical domain FAT PF02259.18 gi|330509100|ref|YP_004385528.1| - 0.069 12.1 8.0 5.2 5.9 1.4 3.3 1 1 1 2 2 2 0 FAT domain RPT PF13446.1 gi|330509100|ref|YP_004385528.1| - 0.12 11.7 1.4 2.8 7.4 0.2 3.7 3 1 0 3 3 2 0 A repeated domain in UCH-protein Lambda_Kil PF06301.6 gi|330509100|ref|YP_004385528.1| - 1.1 8.7 9.2 15 5.0 0.1 4.9 5 0 0 5 5 4 0 Bacteriophage lambda Kil protein DDE_Tnp_ISL3 PF01610.12 gi|330509102|ref|YP_004385530.1| - 7.6e-73 245.1 1.5 1.2e-72 244.5 1.0 1.3 1 0 0 1 1 1 1 Transposase zf-ISL3 PF14690.1 gi|330509102|ref|YP_004385530.1| - 2.4e-12 46.6 6.5 5e-12 45.6 4.5 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Tnp_ISL3 PF13542.1 gi|330509102|ref|YP_004385530.1| - 3.2e-11 42.1 0.1 6.1e-11 41.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 MULE PF10551.4 gi|330509102|ref|YP_004385530.1| - 0.0005 20.1 0.4 0.0071 16.4 0.3 2.4 1 1 0 1 1 1 1 MULE transposase domain TPR_11 PF13414.1 gi|330509103|ref|YP_004385531.1| - 2.5e-52 174.3 23.0 1.3e-16 59.9 0.4 5.0 1 1 3 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|330509103|ref|YP_004385531.1| - 1e-42 142.0 23.8 4.4e-10 38.7 0.0 8.2 9 1 1 10 10 9 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330509103|ref|YP_004385531.1| - 3.7e-38 126.3 17.4 4.4e-07 29.3 0.0 7.8 7 2 1 8 8 8 7 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509103|ref|YP_004385531.1| - 1.1e-36 121.8 10.0 4.5e-06 26.4 0.0 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509103|ref|YP_004385531.1| - 8e-31 105.8 1.8 3.2e-09 36.5 0.0 4.9 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509103|ref|YP_004385531.1| - 9e-30 102.6 8.7 1.3e-09 38.4 0.1 5.6 2 1 4 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509103|ref|YP_004385531.1| - 8.3e-29 97.1 10.6 1e-05 24.9 0.0 7.3 6 1 1 7 7 7 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509103|ref|YP_004385531.1| - 3.2e-26 89.4 5.0 7.9e-05 22.9 0.2 7.2 1 1 6 7 7 7 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509103|ref|YP_004385531.1| - 2.1e-22 79.2 7.5 7.6e-08 32.5 0.1 5.0 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509103|ref|YP_004385531.1| - 8.9e-18 63.9 0.1 5.3e-06 26.1 0.1 4.3 1 1 2 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330509103|ref|YP_004385531.1| - 3.5e-15 55.3 7.0 0.16 12.4 0.0 7.5 7 1 0 7 7 7 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509103|ref|YP_004385531.1| - 1.9e-12 47.1 3.3 2.1e-07 30.9 0.0 3.1 2 1 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|330509103|ref|YP_004385531.1| - 1.5e-08 33.7 6.5 0.13 12.1 0.0 6.3 6 0 0 6 6 6 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|330509103|ref|YP_004385531.1| - 3.1e-08 32.8 0.1 0.0049 15.6 0.0 3.9 1 1 2 4 4 4 3 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|330509103|ref|YP_004385531.1| - 2.9e-06 27.0 7.6 0.55 10.1 0.4 5.2 3 1 1 5 5 5 2 MIT (microtubule interacting and transport) domain DUF3856 PF12968.2 gi|330509103|ref|YP_004385531.1| - 1.7e-05 24.6 3.3 2.6 7.8 0.0 5.4 1 1 6 7 7 7 1 Domain of Unknown Function (DUF3856) BTAD PF03704.12 gi|330509103|ref|YP_004385531.1| - 0.0001 22.6 0.6 0.068 13.4 0.1 3.2 2 2 0 3 3 3 1 Bacterial transcriptional activator domain Fis1_TPR_C PF14853.1 gi|330509103|ref|YP_004385531.1| - 0.0021 17.9 0.4 6.7 6.6 0.0 4.4 5 0 0 5 5 5 0 Fis1 C-terminal tetratricopeptide repeat Ribosomal_S16 PF00886.14 gi|330509103|ref|YP_004385531.1| - 0.0026 17.4 3.1 11 5.8 0.0 4.6 4 2 1 5 5 5 0 Ribosomal protein S16 FAT PF02259.18 gi|330509103|ref|YP_004385531.1| - 0.0035 16.3 5.2 0.24 10.3 0.4 3.9 1 1 1 3 3 3 1 FAT domain PPTA PF01239.17 gi|330509103|ref|YP_004385531.1| - 0.0045 16.2 6.9 0.091 12.1 0.0 3.8 5 0 0 5 5 5 1 Protein prenyltransferase alpha subunit repeat TPR_4 PF07721.9 gi|330509103|ref|YP_004385531.1| - 0.007 16.6 3.4 14 6.5 0.0 4.9 5 0 0 5 5 5 0 Tetratricopeptide repeat Apc5 PF12862.2 gi|330509103|ref|YP_004385531.1| - 0.094 12.5 0.4 1 9.2 0.0 2.8 3 1 0 3 3 3 0 Anaphase-promoting complex subunit 5 DELLA PF12041.3 gi|330509103|ref|YP_004385531.1| - 0.13 11.9 0.3 1.9 8.2 0.1 2.8 1 1 2 3 3 3 0 Transcriptional regulator DELLA protein N terminal DUF2225 PF09986.4 gi|330509103|ref|YP_004385531.1| - 0.19 11.1 1.2 0.65 9.4 0.1 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_21 PF09976.4 gi|330509103|ref|YP_004385531.1| - 1 9.2 3.9 32 4.4 0.1 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330509104|ref|YP_004385532.1| - 3.8e-52 173.8 19.0 5e-14 51.7 0.1 6.7 2 1 4 7 7 7 7 TPR repeat TPR_1 PF00515.23 gi|330509104|ref|YP_004385532.1| - 3.2e-47 156.2 25.8 7.5e-08 31.6 0.0 12.1 12 0 0 12 12 12 8 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330509104|ref|YP_004385532.1| - 3.4e-42 138.9 26.3 4.7e-06 26.1 0.0 11.6 12 0 0 12 12 12 9 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509104|ref|YP_004385532.1| - 9.9e-34 115.1 14.4 2.3e-09 37.0 0.0 6.5 4 3 3 7 7 6 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509104|ref|YP_004385532.1| - 8e-33 112.3 15.6 2.9e-07 30.9 0.0 7.1 3 2 5 8 8 8 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509104|ref|YP_004385532.1| - 5.9e-29 97.8 15.1 0.00012 21.9 0.0 9.0 10 0 0 10 10 9 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509104|ref|YP_004385532.1| - 7.5e-27 91.0 21.6 0.00021 20.8 0.1 10.8 10 1 0 10 10 10 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509104|ref|YP_004385532.1| - 1.7e-26 90.3 13.9 0.0021 18.5 0.0 10.3 3 3 7 10 10 10 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509104|ref|YP_004385532.1| - 3.5e-25 88.1 12.8 9.5e-07 29.0 0.0 6.9 5 3 2 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509104|ref|YP_004385532.1| - 1.8e-19 69.3 0.4 0.00013 21.7 0.0 5.4 5 1 0 6 6 5 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509104|ref|YP_004385532.1| - 1.8e-15 56.7 0.8 1.6e-05 24.9 0.0 5.2 2 2 3 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|330509104|ref|YP_004385532.1| - 8.5e-12 44.6 3.3 0.048 13.5 0.0 6.3 6 0 0 6 6 5 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330509104|ref|YP_004385532.1| - 1.8e-11 43.6 4.1 0.0034 17.2 0.0 6.3 7 1 0 7 7 7 3 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.1 gi|330509104|ref|YP_004385532.1| - 2.5e-11 42.4 10.3 0.1 12.4 0.0 8.4 10 0 0 10 10 10 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|330509104|ref|YP_004385532.1| - 8.1e-09 35.5 15.8 0.00083 19.3 0.0 5.8 4 2 2 6 6 6 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|330509104|ref|YP_004385532.1| - 1.8e-08 33.6 3.8 0.0036 16.1 0.0 4.1 2 2 2 4 4 4 2 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|330509104|ref|YP_004385532.1| - 8e-08 32.2 15.1 0.38 10.5 0.4 6.5 3 2 3 6 6 6 3 Domain of Unknown Function (DUF3856) TPR_6 PF13174.1 gi|330509104|ref|YP_004385532.1| - 1e-06 28.7 15.3 7.6 7.2 0.0 9.4 10 0 0 10 10 9 0 Tetratricopeptide repeat MIT PF04212.13 gi|330509104|ref|YP_004385532.1| - 2.2e-06 27.4 14.2 0.22 11.4 0.1 7.4 6 4 3 9 9 8 2 MIT (microtubule interacting and transport) domain BTAD PF03704.12 gi|330509104|ref|YP_004385532.1| - 1.1e-05 25.7 7.5 0.0029 17.9 0.0 5.0 4 1 1 5 5 5 1 Bacterial transcriptional activator domain Alkyl_sulf_dimr PF14863.1 gi|330509104|ref|YP_004385532.1| - 4.5e-05 23.7 3.7 0.091 12.9 0.0 3.9 4 0 0 4 4 4 1 Alkyl sulfatase dimerisation RPN7 PF10602.4 gi|330509104|ref|YP_004385532.1| - 0.00067 19.0 0.4 1.8 7.9 0.0 4.1 2 2 2 4 4 4 1 26S proteasome subunit RPN7 Coatomer_E PF04733.9 gi|330509104|ref|YP_004385532.1| - 0.00082 18.6 1.5 0.7 9.0 0.0 3.0 3 0 0 3 3 3 2 Coatomer epsilon subunit FAT PF02259.18 gi|330509104|ref|YP_004385532.1| - 0.0015 17.5 1.1 0.06 12.3 0.3 3.3 2 2 1 3 3 3 1 FAT domain Apc5 PF12862.2 gi|330509104|ref|YP_004385532.1| - 0.011 15.5 4.9 4.1 7.3 0.2 5.6 5 2 1 7 7 5 0 Anaphase-promoting complex subunit 5 SHNi-TPR PF10516.4 gi|330509104|ref|YP_004385532.1| - 0.015 14.5 2.6 16 4.8 0.0 5.2 7 0 0 7 7 7 0 SHNi-TPR 14-3-3 PF00244.15 gi|330509104|ref|YP_004385532.1| - 0.016 14.2 1.7 2.1 7.3 0.0 3.7 4 1 1 5 5 5 0 14-3-3 protein TOM20_plant PF06552.7 gi|330509104|ref|YP_004385532.1| - 0.066 12.7 5.8 0.6 9.6 0.6 4.1 3 1 0 4 4 4 0 Plant specific mitochondrial import receptor subunit TOM20 MarR_2 PF12802.2 gi|330509105|ref|YP_004385533.1| - 0.00011 21.7 0.0 0.00027 20.5 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|330509105|ref|YP_004385533.1| - 0.0052 16.4 0.1 0.0095 15.6 0.1 1.4 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.11 gi|330509105|ref|YP_004385533.1| - 0.017 15.2 0.4 0.03 14.4 0.3 1.3 1 0 0 1 1 1 0 Penicillinase repressor TrmB PF01978.14 gi|330509105|ref|YP_004385533.1| - 0.017 14.7 0.1 0.031 13.9 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|330509105|ref|YP_004385533.1| - 0.018 14.4 0.1 0.034 13.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|330509105|ref|YP_004385533.1| - 0.027 14.0 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|330509105|ref|YP_004385533.1| - 0.14 12.1 0.3 0.28 11.1 0.2 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein TPR_11 PF13414.1 gi|330509106|ref|YP_004385534.1| - 7.1e-25 86.4 5.3 3.2e-08 33.1 0.0 4.1 3 1 1 4 4 4 4 TPR repeat TPR_2 PF07719.12 gi|330509106|ref|YP_004385534.1| - 2.7e-22 76.8 3.8 2.9e-05 23.6 0.1 5.7 5 1 1 6 6 6 6 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330509106|ref|YP_004385534.1| - 2e-19 68.2 4.2 0.00033 20.1 0.0 5.4 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509106|ref|YP_004385534.1| - 2.8e-15 56.4 0.4 6e-06 26.7 0.0 4.4 3 1 0 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509106|ref|YP_004385534.1| - 1.2e-14 53.2 1.9 0.0012 18.8 0.0 5.4 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509106|ref|YP_004385534.1| - 4.8e-14 52.4 8.3 6.7e-05 23.1 0.2 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509106|ref|YP_004385534.1| - 4.5e-13 48.9 6.5 2.2e-07 30.7 0.1 4.2 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509106|ref|YP_004385534.1| - 2.5e-12 46.2 3.1 0.13 12.9 0.0 5.9 2 1 4 6 6 6 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509106|ref|YP_004385534.1| - 4.8e-12 44.7 4.9 0.013 15.2 0.0 5.4 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509106|ref|YP_004385534.1| - 4e-08 32.9 0.0 0.0019 18.0 0.0 3.4 3 1 1 4 4 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509106|ref|YP_004385534.1| - 9.7e-07 28.8 0.8 0.001 19.1 0.2 3.3 2 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.3 gi|330509106|ref|YP_004385534.1| - 1.5e-05 23.9 1.8 0.00072 18.4 0.2 2.4 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_7 PF13176.1 gi|330509106|ref|YP_004385534.1| - 3.8e-05 23.1 3.3 0.73 9.7 0.0 4.5 5 0 0 5 5 4 2 Tetratricopeptide repeat SNAP PF14938.1 gi|330509106|ref|YP_004385534.1| - 6.1e-05 22.3 3.6 0.00086 18.5 0.3 2.3 2 1 0 2 2 2 1 Soluble NSF attachment protein, SNAP PPTA PF01239.17 gi|330509106|ref|YP_004385534.1| - 0.00023 20.3 1.7 1 8.8 0.0 4.2 4 0 0 4 4 4 1 Protein prenyltransferase alpha subunit repeat TPR_6 PF13174.1 gi|330509106|ref|YP_004385534.1| - 0.002 18.4 4.6 2.2 8.9 0.0 5.0 5 0 0 5 5 5 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330509106|ref|YP_004385534.1| - 0.0061 16.3 4.8 0.25 11.1 0.1 3.6 2 1 2 4 4 4 1 Domain of Unknown Function (DUF3856) BTAD PF03704.12 gi|330509106|ref|YP_004385534.1| - 0.0073 16.6 0.4 0.78 10.0 0.0 2.9 1 1 3 4 4 4 1 Bacterial transcriptional activator domain TOM20_plant PF06552.7 gi|330509106|ref|YP_004385534.1| - 0.055 13.0 1.4 0.29 10.6 0.3 2.4 1 1 1 2 2 2 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_10 PF13374.1 gi|330509106|ref|YP_004385534.1| - 6 6.9 7.3 4.8 7.2 0.0 4.2 5 1 1 6 6 6 0 Tetratricopeptide repeat MarR_2 PF12802.2 gi|330509107|ref|YP_004385535.1| - 9.5e-07 28.4 0.1 1.8e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|330509107|ref|YP_004385535.1| - 0.00041 19.8 0.2 0.00085 18.8 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|330509107|ref|YP_004385535.1| - 0.00098 18.7 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|330509107|ref|YP_004385535.1| - 0.0011 18.3 0.2 0.0018 17.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.6 gi|330509107|ref|YP_004385535.1| - 0.019 14.8 0.0 0.036 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR PF01047.17 gi|330509107|ref|YP_004385535.1| - 0.05 13.3 0.3 0.11 12.1 0.2 1.7 1 0 0 1 1 1 0 MarR family DUF4349 PF14257.1 gi|330509107|ref|YP_004385535.1| - 0.57 9.3 3.4 0.39 9.9 1.3 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) TPR_11 PF13414.1 gi|330509108|ref|YP_004385536.1| - 2.6e-41 139.0 17.1 1.2e-11 44.1 0.3 6.1 1 1 6 7 7 7 7 TPR repeat TPR_1 PF00515.23 gi|330509108|ref|YP_004385536.1| - 6.5e-38 126.8 20.2 1.6e-05 24.2 0.0 9.4 8 1 0 8 8 8 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330509108|ref|YP_004385536.1| - 2.1e-35 117.7 20.0 0.00029 20.5 0.1 8.7 9 0 0 9 9 8 8 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509108|ref|YP_004385536.1| - 5.2e-31 106.6 11.4 1.4e-08 35.1 0.0 6.3 3 2 2 6 6 6 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509108|ref|YP_004385536.1| - 9.7e-28 94.0 10.1 8e-05 22.5 0.0 8.2 8 2 0 8 8 7 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509108|ref|YP_004385536.1| - 1.7e-25 87.1 18.2 0.00051 20.4 0.0 8.0 4 2 4 8 8 8 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509108|ref|YP_004385536.1| - 5.8e-23 78.8 14.4 0.0033 17.0 0.0 8.6 9 0 0 9 9 8 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509108|ref|YP_004385536.1| - 6.5e-22 77.2 19.3 2.9e-08 33.5 0.2 6.3 3 2 3 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509108|ref|YP_004385536.1| - 2.7e-18 66.0 19.0 0.0012 19.1 1.1 6.3 4 1 2 6 6 6 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509108|ref|YP_004385536.1| - 1.2e-14 53.9 4.4 0.0034 17.1 0.1 6.1 3 1 3 6 6 6 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330509108|ref|YP_004385536.1| - 6.9e-13 47.3 13.4 0.085 12.6 0.1 8.0 7 1 1 8 8 8 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|330509108|ref|YP_004385536.1| - 3e-11 42.7 2.2 0.0065 15.2 0.0 4.8 3 1 1 5 5 5 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|330509108|ref|YP_004385536.1| - 2.7e-09 36.7 5.7 0.0092 15.8 0.0 5.6 6 0 0 6 6 6 3 Fis1 C-terminal tetratricopeptide repeat Apc3 PF12895.2 gi|330509108|ref|YP_004385536.1| - 9.6e-09 35.2 6.4 0.0063 16.6 0.1 5.0 3 1 2 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|330509108|ref|YP_004385536.1| - 1.4e-07 31.4 10.3 0.0015 18.3 0.1 4.8 1 1 3 4 4 4 3 Domain of Unknown Function (DUF3856) TOM20_plant PF06552.7 gi|330509108|ref|YP_004385536.1| - 3.2e-07 30.1 5.5 0.014 15.0 0.1 4.5 2 1 3 5 5 5 2 Plant specific mitochondrial import receptor subunit TOM20 TPR_6 PF13174.1 gi|330509108|ref|YP_004385536.1| - 1.5e-06 28.3 13.5 3.7 8.2 0.0 7.4 8 0 0 8 8 8 1 Tetratricopeptide repeat PPTA PF01239.17 gi|330509108|ref|YP_004385536.1| - 1.6e-05 24.0 0.4 2 7.9 0.0 4.9 5 0 0 5 5 5 1 Protein prenyltransferase alpha subunit repeat DLD PF14878.1 gi|330509108|ref|YP_004385536.1| - 5.6e-05 23.2 2.2 0.0005 20.1 0.6 2.4 2 0 0 2 2 2 1 Death-like domain of SPT6 Coatomer_E PF04733.9 gi|330509108|ref|YP_004385536.1| - 0.00046 19.4 1.8 1.2 8.2 0.0 3.3 2 1 1 3 3 3 2 Coatomer epsilon subunit TPR_10 PF13374.1 gi|330509108|ref|YP_004385536.1| - 0.00049 19.9 14.3 0.12 12.3 0.1 6.0 6 0 0 6 6 6 1 Tetratricopeptide repeat BTAD PF03704.12 gi|330509108|ref|YP_004385536.1| - 0.0021 18.3 2.7 2.6 8.3 0.2 3.4 3 1 0 3 3 3 2 Bacterial transcriptional activator domain Alkyl_sulf_dimr PF14863.1 gi|330509108|ref|YP_004385536.1| - 0.0079 16.4 4.8 2.9 8.1 0.0 4.4 3 2 1 4 4 4 1 Alkyl sulfatase dimerisation FAT PF02259.18 gi|330509108|ref|YP_004385536.1| - 0.0093 14.9 3.4 0.8 8.6 0.0 3.4 1 1 3 4 4 4 1 FAT domain MIT PF04212.13 gi|330509108|ref|YP_004385536.1| - 0.067 13.0 13.4 0.79 9.6 0.7 5.8 6 2 1 7 7 6 0 MIT (microtubule interacting and transport) domain DUF2225 PF09986.4 gi|330509108|ref|YP_004385536.1| - 0.23 10.8 5.6 0.42 10.0 0.4 3.0 1 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_21 PF09976.4 gi|330509108|ref|YP_004385536.1| - 0.34 10.8 17.9 0.64 9.9 0.5 3.9 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_5 PF12688.2 gi|330509108|ref|YP_004385536.1| - 1.3 9.1 8.9 21 5.1 0.1 4.8 2 2 2 5 5 5 0 Tetratrico peptide repeat TPR_3 PF07720.7 gi|330509108|ref|YP_004385536.1| - 3.1 7.6 12.7 2.1 8.2 0.0 4.7 6 0 0 6 6 4 0 Tetratricopeptide repeat MarR_2 PF12802.2 gi|330509109|ref|YP_004385537.1| - 5.7e-08 32.3 0.2 1.3e-07 31.2 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|330509109|ref|YP_004385537.1| - 4.9e-05 22.6 0.4 9.3e-05 21.7 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|330509109|ref|YP_004385537.1| - 0.00051 19.5 0.1 0.00051 19.5 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|330509109|ref|YP_004385537.1| - 0.00052 19.6 0.1 0.001 18.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|330509109|ref|YP_004385537.1| - 0.0014 18.2 0.2 0.0029 17.2 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|330509109|ref|YP_004385537.1| - 0.0044 17.3 0.4 0.0077 16.5 0.3 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|330509109|ref|YP_004385537.1| - 0.0091 16.0 0.2 0.017 15.2 0.1 1.4 1 0 0 1 1 1 1 Penicillinase repressor Sigma70_r4 PF04545.11 gi|330509109|ref|YP_004385537.1| - 0.013 14.8 0.2 0.029 13.6 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_9 PF08221.6 gi|330509109|ref|YP_004385537.1| - 0.023 14.5 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain RNA_pol_Rpc34 PF05158.7 gi|330509109|ref|YP_004385537.1| - 0.044 12.9 0.1 0.066 12.3 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit IncA PF04156.9 gi|330509109|ref|YP_004385537.1| - 0.19 11.3 1.5 0.2 11.2 0.1 1.8 2 0 0 2 2 2 0 IncA protein TPR_1 PF00515.23 gi|330509110|ref|YP_004385538.1| - 6.4e-72 234.4 51.4 6.9e-09 34.9 0.1 15.1 15 1 1 16 16 15 13 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330509110|ref|YP_004385538.1| - 1.3e-67 223.3 49.6 9.6e-15 53.9 0.7 9.6 5 3 6 11 11 11 10 TPR repeat TPR_2 PF07719.12 gi|330509110|ref|YP_004385538.1| - 1.5e-67 218.1 54.8 8.9e-08 31.4 0.2 15.2 16 1 0 16 16 14 12 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509110|ref|YP_004385538.1| - 4.8e-49 164.0 47.6 3.2e-10 40.4 2.1 10.5 6 3 5 11 11 11 9 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509110|ref|YP_004385538.1| - 9e-49 159.6 47.4 5.3e-06 25.8 0.2 15.0 16 0 0 16 16 14 10 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509110|ref|YP_004385538.1| - 8.5e-41 137.7 43.5 1.5e-09 37.6 0.9 9.6 6 4 4 10 10 9 8 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509110|ref|YP_004385538.1| - 9.1e-39 128.3 37.9 0.00088 19.7 1.2 14.1 6 3 9 15 15 15 11 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509110|ref|YP_004385538.1| - 4.3e-36 120.1 36.5 0.00033 20.6 0.0 14.5 14 2 0 14 14 14 8 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509110|ref|YP_004385538.1| - 2e-33 114.5 39.7 1.6e-07 31.5 1.4 9.4 5 2 5 10 10 10 8 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509110|ref|YP_004385538.1| - 1.7e-22 79.0 25.8 4.8e-05 23.1 0.1 9.2 3 3 4 9 9 9 6 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509110|ref|YP_004385538.1| - 4e-21 74.9 12.6 0.00017 21.6 0.1 6.6 3 3 4 7 7 7 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|330509110|ref|YP_004385538.1| - 3.2e-20 71.1 38.5 0.055 13.9 0.1 14.3 14 1 0 14 14 13 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330509110|ref|YP_004385538.1| - 5.7e-17 60.0 29.2 0.0097 15.6 0.3 11.8 13 0 0 13 13 11 6 Tetratricopeptide repeat TPR_5 PF12688.2 gi|330509110|ref|YP_004385538.1| - 5.4e-13 49.0 10.7 0.0047 16.9 0.3 6.2 5 1 1 6 6 6 3 Tetratrico peptide repeat DUF3856 PF12968.2 gi|330509110|ref|YP_004385538.1| - 1.1e-12 48.0 18.7 0.092 12.5 0.1 9.6 3 2 5 8 8 8 5 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|330509110|ref|YP_004385538.1| - 1e-07 31.1 13.2 1 8.0 0.0 7.1 2 2 3 7 7 7 2 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|330509110|ref|YP_004385538.1| - 1.8e-06 27.7 35.6 0.28 11.1 0.2 10.5 9 4 1 11 11 11 2 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.1 gi|330509110|ref|YP_004385538.1| - 3.2e-06 26.9 17.9 0.39 10.6 0.1 7.3 7 1 1 8 8 7 1 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.12 gi|330509110|ref|YP_004385538.1| - 3e-05 24.3 20.8 0.23 11.7 0.0 7.6 4 2 4 8 8 8 2 Bacterial transcriptional activator domain DUF3775 PF12616.3 gi|330509110|ref|YP_004385538.1| - 0.00025 20.7 8.8 0.71 9.7 0.0 6.4 5 2 0 6 6 6 1 Protein of unknown function (DUF3775) TPR_3 PF07720.7 gi|330509110|ref|YP_004385538.1| - 0.00026 20.6 10.7 0.12 12.2 0.1 5.5 5 0 0 5 5 5 2 Tetratricopeptide repeat Peptidase_M15_4 PF13539.1 gi|330509110|ref|YP_004385538.1| - 0.013 15.9 0.9 7 7.1 0.1 3.6 3 0 0 3 3 2 0 D-alanyl-D-alanine carboxypeptidase PPR PF01535.15 gi|330509110|ref|YP_004385538.1| - 0.031 14.2 0.9 8.4 6.6 0.0 5.1 5 0 0 5 5 4 0 PPR repeat DUF365 PF04033.7 gi|330509110|ref|YP_004385538.1| - 0.067 13.1 0.0 0.27 11.2 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF365) SHNi-TPR PF10516.4 gi|330509110|ref|YP_004385538.1| - 0.11 11.8 9.7 0.96 8.7 0.2 5.2 6 0 0 6 6 6 0 SHNi-TPR TruB_N PF01509.13 gi|330509110|ref|YP_004385538.1| - 0.11 12.6 0.1 15 5.7 0.0 3.7 3 2 2 5 5 4 0 TruB family pseudouridylate synthase (N terminal domain) TPR_21 PF09976.4 gi|330509110|ref|YP_004385538.1| - 0.16 11.9 0.2 0.16 11.9 0.1 6.4 6 3 2 8 8 7 0 Tetratricopeptide repeat TPR_20 PF14561.1 gi|330509110|ref|YP_004385538.1| - 0.18 11.9 17.9 11 6.2 0.1 6.7 5 2 3 8 8 7 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330509110|ref|YP_004385538.1| - 1.1 9.3 0.0 0.057 13.3 0.9 9.5 12 0 0 12 12 10 0 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|330509110|ref|YP_004385538.1| - 2.6 7.6 10.6 3.1 7.3 0.5 4.5 4 2 1 6 6 5 0 Plant specific mitochondrial import receptor subunit TOM20 PPTA PF01239.17 gi|330509110|ref|YP_004385538.1| - 5.8 6.4 12.7 2.5 7.5 0.2 5.1 6 1 0 6 6 6 0 Protein prenyltransferase alpha subunit repeat Dicty_CTDC PF00526.13 gi|330509111|ref|YP_004385539.1| - 8.3e-27 92.5 131.2 3.6e-05 23.4 4.9 11.3 10 2 0 10 10 10 10 Dictyostelium (slime mold) repeat TPR_11 PF13414.1 gi|330509112|ref|YP_004385540.1| - 9e-53 175.8 34.6 1.3e-07 31.0 0.9 8.9 4 3 4 9 9 9 9 TPR repeat TPR_2 PF07719.12 gi|330509112|ref|YP_004385540.1| - 1.6e-43 143.1 37.1 7.6e-05 22.3 0.1 13.3 13 0 0 13 13 13 12 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330509112|ref|YP_004385540.1| - 3.3e-42 140.4 40.0 2.7e-06 26.7 0.0 13.4 13 0 0 13 13 13 11 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509112|ref|YP_004385540.1| - 4.3e-29 100.5 30.4 1.3e-06 28.8 0.9 8.9 5 4 4 9 9 9 8 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509112|ref|YP_004385540.1| - 4.7e-29 97.9 35.8 0.0077 15.9 0.0 12.6 12 1 1 13 13 12 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509112|ref|YP_004385540.1| - 5.2e-27 91.7 23.0 0.035 14.3 0.0 12.0 12 0 0 12 12 11 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509112|ref|YP_004385540.1| - 1.1e-25 87.7 25.4 0.00039 20.8 0.1 12.5 6 3 7 13 13 13 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509112|ref|YP_004385540.1| - 3.9e-25 87.5 30.1 3e-07 30.2 0.2 8.1 3 2 7 11 11 11 10 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509112|ref|YP_004385540.1| - 4.5e-14 52.5 28.8 0.00046 20.4 0.5 8.4 6 2 3 9 9 9 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330509112|ref|YP_004385540.1| - 1.1e-10 41.2 26.3 0.2 12.2 0.0 10.5 11 0 0 11 11 11 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509112|ref|YP_004385540.1| - 6.9e-09 35.4 11.5 0.03 14.1 0.0 7.5 4 3 3 8 8 8 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330509112|ref|YP_004385540.1| - 1.3e-07 31.4 18.2 0.059 13.2 0.9 6.5 2 1 3 5 5 5 4 Domain of Unknown Function (DUF3856) Apc3 PF12895.2 gi|330509112|ref|YP_004385540.1| - 1.6e-07 31.3 16.6 0.004 17.2 0.4 5.9 4 2 4 8 8 7 3 Anaphase-promoting complex, cyclosome, subunit 3 PPTA PF01239.17 gi|330509112|ref|YP_004385540.1| - 1.1e-06 27.7 0.1 0.31 10.4 0.0 5.0 5 0 0 5 5 5 1 Protein prenyltransferase alpha subunit repeat TPR_7 PF13176.1 gi|330509112|ref|YP_004385540.1| - 6e-06 25.6 21.5 1.6 8.6 0.0 10.4 10 1 0 10 10 10 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330509112|ref|YP_004385540.1| - 0.00038 20.2 5.4 21 5.0 0.0 6.4 7 0 0 7 7 7 0 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.13 gi|330509112|ref|YP_004385540.1| - 0.0069 16.2 16.5 2.8 7.8 0.2 7.3 6 2 1 7 7 7 2 MIT (microtubule interacting and transport) domain BTAD PF03704.12 gi|330509112|ref|YP_004385540.1| - 0.007 16.6 6.7 0.8 9.9 0.1 4.9 4 1 1 5 5 5 1 Bacterial transcriptional activator domain DUF1250 PF06855.7 gi|330509112|ref|YP_004385540.1| - 0.047 13.2 2.5 31 4.1 0.0 4.7 6 0 0 6 6 5 0 Protein of unknown function (DUF1250) Apc5 PF12862.2 gi|330509112|ref|YP_004385540.1| - 0.48 10.3 8.8 11 5.9 0.0 5.6 4 1 0 4 4 4 0 Anaphase-promoting complex subunit 5 Sda PF08970.5 gi|330509112|ref|YP_004385540.1| - 5.8 6.4 6.8 3.1 7.3 0.0 4.0 4 0 0 4 4 4 0 Sporulation inhibitor A TPR_1 PF00515.23 gi|330509113|ref|YP_004385541.1| - 2.5e-51 169.2 12.4 7.9e-07 28.4 0.0 12.4 12 1 0 12 12 12 9 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330509113|ref|YP_004385541.1| - 1.7e-50 164.8 23.7 4.8e-07 29.2 0.0 12.4 12 1 1 13 13 13 10 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330509113|ref|YP_004385541.1| - 2e-47 158.7 29.1 6.6e-09 35.3 0.0 7.6 4 3 2 7 7 7 7 TPR repeat TPR_16 PF13432.1 gi|330509113|ref|YP_004385541.1| - 2.4e-45 152.2 18.2 2.2e-08 34.5 0.0 8.0 4 2 4 8 8 8 8 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509113|ref|YP_004385541.1| - 5.7e-40 132.1 18.3 1.7e-06 27.4 0.0 12.1 11 1 1 12 12 12 7 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509113|ref|YP_004385541.1| - 3.1e-37 126.3 26.3 4.9e-09 36.0 0.0 7.1 3 2 5 8 8 8 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509113|ref|YP_004385541.1| - 2.7e-33 111.4 22.8 1.4e-05 25.3 0.1 11.0 3 2 8 11 11 11 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509113|ref|YP_004385541.1| - 3e-30 101.8 19.9 0.00049 20.0 0.0 11.6 12 1 0 12 12 11 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509113|ref|YP_004385541.1| - 8e-28 96.5 23.7 4.1e-06 27.0 0.2 7.8 3 2 6 9 9 9 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509113|ref|YP_004385541.1| - 6.4e-22 77.1 10.5 8.9e-05 22.2 0.0 7.3 3 2 5 8 8 8 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509113|ref|YP_004385541.1| - 6.8e-18 64.5 12.0 7.9e-06 25.9 0.9 6.3 3 2 4 7 7 7 6 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|330509113|ref|YP_004385541.1| - 2e-16 60.1 20.6 7.7e-05 22.5 1.8 7.0 1 1 5 6 6 6 4 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|330509113|ref|YP_004385541.1| - 6.5e-15 54.8 13.8 0.0015 17.4 0.5 6.4 2 1 3 6 6 6 4 NMDA receptor-regulated protein 1 TPR_7 PF13176.1 gi|330509113|ref|YP_004385541.1| - 1e-12 46.7 24.0 0.39 10.6 0.0 11.1 11 1 0 11 11 11 3 Tetratricopeptide repeat TPR_15 PF13429.1 gi|330509113|ref|YP_004385541.1| - 4.9e-12 45.4 22.7 0.039 13.0 2.6 6.3 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330509113|ref|YP_004385541.1| - 3.4e-11 42.8 16.3 3.4 8.3 0.0 11.1 12 0 0 12 12 12 1 Tetratricopeptide repeat SNAP PF14938.1 gi|330509113|ref|YP_004385541.1| - 4.8e-08 32.4 14.5 4.7e-05 22.6 0.7 3.7 2 2 1 3 3 3 3 Soluble NSF attachment protein, SNAP BTAD PF03704.12 gi|330509113|ref|YP_004385541.1| - 1.7e-07 31.6 13.0 3.2 8.0 0.1 6.0 2 2 6 8 8 8 1 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|330509113|ref|YP_004385541.1| - 2.5e-07 30.7 6.8 0.38 10.7 0.0 5.2 1 1 2 5 5 5 3 Tetratrico peptide repeat ChAPs PF09295.5 gi|330509113|ref|YP_004385541.1| - 1.8e-06 26.9 1.7 0.28 9.8 0.0 3.5 1 1 2 3 3 3 3 ChAPs (Chs5p-Arf1p-binding proteins) TPR_20 PF14561.1 gi|330509113|ref|YP_004385541.1| - 2.3e-06 27.6 16.7 0.87 9.7 0.0 7.5 4 2 4 8 8 8 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330509113|ref|YP_004385541.1| - 2.9e-06 26.9 24.1 1.7 8.7 0.0 9.1 11 0 0 11 11 10 3 Tetratricopeptide repeat TPR_21 PF09976.4 gi|330509113|ref|YP_004385541.1| - 3.3e-06 27.0 16.0 0.033 14.1 0.0 5.3 4 1 0 5 5 5 2 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|330509113|ref|YP_004385541.1| - 5e-05 22.6 11.8 0.55 9.3 0.1 4.3 1 1 3 4 4 4 3 Coatomer epsilon subunit Fis1_TPR_C PF14853.1 gi|330509113|ref|YP_004385541.1| - 0.00011 22.0 3.2 1.7 8.6 0.0 5.4 6 0 0 6 6 4 1 Fis1 C-terminal tetratricopeptide repeat Apc5 PF12862.2 gi|330509113|ref|YP_004385541.1| - 0.0018 18.0 8.0 2.5 7.9 0.1 5.8 6 2 1 7 7 5 1 Anaphase-promoting complex subunit 5 DUF2225 PF09986.4 gi|330509113|ref|YP_004385541.1| - 0.0033 16.9 8.1 0.062 12.7 0.2 3.2 2 1 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_4 PF07721.9 gi|330509113|ref|YP_004385541.1| - 0.0037 17.5 17.9 0.51 10.9 0.6 6.5 8 0 0 8 8 6 2 Tetratricopeptide repeat Mhr1 PF12829.2 gi|330509113|ref|YP_004385541.1| - 0.026 14.3 0.7 3 7.7 0.0 3.0 2 1 0 2 2 2 0 Transcriptional regulation of mitochondrial recombination MIT PF04212.13 gi|330509113|ref|YP_004385541.1| - 0.045 13.6 24.2 5.4 6.9 0.1 9.1 6 2 3 10 10 9 0 MIT (microtubule interacting and transport) domain DUF3808 PF10300.4 gi|330509113|ref|YP_004385541.1| - 0.24 9.9 5.2 0.94 7.9 0.6 3.1 2 2 1 3 3 3 0 Protein of unknown function (DUF3808) UPF0122 PF04297.9 gi|330509113|ref|YP_004385541.1| - 0.29 11.1 3.9 2.5 8.1 0.5 3.4 4 1 0 4 4 2 0 Putative helix-turn-helix protein, YlxM / p13 like PPTA PF01239.17 gi|330509113|ref|YP_004385541.1| - 0.35 10.2 0.1 0.35 10.2 0.1 5.3 6 0 0 6 6 6 0 Protein prenyltransferase alpha subunit repeat DUF3366 PF11846.3 gi|330509113|ref|YP_004385541.1| - 0.9 9.3 7.8 6.5 6.5 0.2 3.7 2 2 2 5 5 5 0 Domain of unknown function (DUF3366) PPR PF01535.15 gi|330509113|ref|YP_004385541.1| - 1.8 8.7 12.5 34 4.7 0.0 6.9 10 0 0 10 10 5 0 PPR repeat Retrotrans_gag PF03732.12 gi|330509113|ref|YP_004385541.1| - 2.3 8.3 6.4 0.97 9.5 0.2 3.3 3 0 0 3 3 3 0 Retrotransposon gag protein CCDC-167 PF15188.1 gi|330509113|ref|YP_004385541.1| - 4.2 7.3 6.4 6.8 6.7 0.1 3.9 3 1 0 3 3 3 0 Coiled-coil domain-containing protein 167 Spore_III_AB PF09548.5 gi|330509113|ref|YP_004385541.1| - 6.5 6.4 9.0 3.8 7.2 0.1 3.5 3 1 1 4 4 3 0 Stage III sporulation protein AB (spore_III_AB) TPR_11 PF13414.1 gi|330509114|ref|YP_004385542.1| - 1.3e-68 226.5 27.0 1e-12 47.4 0.1 9.5 6 3 3 9 9 9 9 TPR repeat TPR_2 PF07719.12 gi|330509114|ref|YP_004385542.1| - 6.5e-65 209.9 28.1 3.7e-06 26.4 0.1 15.3 15 0 0 15 15 15 11 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330509114|ref|YP_004385542.1| - 5.5e-60 196.6 18.2 9.7e-08 31.3 0.2 15.3 15 0 0 15 15 15 12 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509114|ref|YP_004385542.1| - 4.8e-46 151.1 25.8 0.00014 21.3 0.0 15.2 13 2 2 15 15 15 8 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509114|ref|YP_004385542.1| - 2.1e-42 142.9 30.5 8.8e-09 35.8 0.3 10.3 5 3 3 10 10 10 7 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509114|ref|YP_004385542.1| - 2.1e-38 130.0 18.1 1.8e-08 34.1 0.1 9.2 6 2 3 9 9 9 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509114|ref|YP_004385542.1| - 6.1e-30 100.9 27.1 0.023 15.3 0.1 13.9 4 2 10 14 14 14 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509114|ref|YP_004385542.1| - 6e-27 91.5 16.4 0.001 19.1 0.2 11.7 12 1 1 13 13 11 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509114|ref|YP_004385542.1| - 2e-25 88.8 26.5 0.002 18.4 0.0 10.2 6 3 3 10 10 10 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509114|ref|YP_004385542.1| - 9.4e-23 79.8 11.2 0.0074 16.1 0.0 8.6 5 3 3 9 9 9 5 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330509114|ref|YP_004385542.1| - 4.4e-16 59.0 22.8 1.1e-07 31.8 0.1 8.7 4 3 3 8 8 8 3 Domain of Unknown Function (DUF3856) Apc3 PF12895.2 gi|330509114|ref|YP_004385542.1| - 2.9e-13 49.7 7.7 1.9e-06 27.8 0.1 6.2 5 2 3 8 8 7 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|330509114|ref|YP_004385542.1| - 1.3e-12 47.2 19.1 0.29 11.6 0.0 11.9 15 0 0 15 15 12 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330509114|ref|YP_004385542.1| - 1.6e-11 43.0 10.7 0.26 11.1 0.0 10.7 12 0 0 12 12 11 1 Tetratricopeptide repeat BTAD PF03704.12 gi|330509114|ref|YP_004385542.1| - 1.1e-07 32.2 9.3 1.1 9.5 0.0 7.6 6 3 5 11 11 10 3 Bacterial transcriptional activator domain PPTA PF01239.17 gi|330509114|ref|YP_004385542.1| - 2.7e-07 29.6 1.1 0.024 14.0 0.0 4.9 4 0 0 4 4 4 2 Protein prenyltransferase alpha subunit repeat LTD PF00932.14 gi|330509114|ref|YP_004385542.1| - 8.4e-07 29.0 0.0 2.3e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Lamin Tail Domain NARP1 PF12569.3 gi|330509114|ref|YP_004385542.1| - 1e-06 27.8 9.9 0.17 10.6 0.0 6.2 4 2 1 6 6 6 2 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|330509114|ref|YP_004385542.1| - 4.2e-05 23.3 9.5 0.7 9.8 0.0 6.9 7 1 1 8 8 7 1 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.1 gi|330509114|ref|YP_004385542.1| - 0.00027 21.0 15.2 2.3 8.3 0.6 7.0 5 2 3 8 8 7 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|330509114|ref|YP_004385542.1| - 0.00043 20.2 21.8 0.00049 20.0 0.0 6.2 5 2 0 6 6 6 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|330509114|ref|YP_004385542.1| - 0.0013 17.8 18.1 0.003 16.6 0.4 5.9 3 2 4 7 7 7 2 Tetratricopeptide repeat FAT PF02259.18 gi|330509114|ref|YP_004385542.1| - 0.0088 15.0 6.9 1.4 7.8 0.0 4.5 4 1 0 4 4 4 2 FAT domain Alkyl_sulf_dimr PF14863.1 gi|330509114|ref|YP_004385542.1| - 0.011 15.9 3.9 7.1 6.8 0.1 4.1 3 1 2 5 5 5 0 Alkyl sulfatase dimerisation TOM20_plant PF06552.7 gi|330509114|ref|YP_004385542.1| - 0.032 13.8 9.5 3.9 7.0 0.1 4.2 3 1 0 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_10 PF13374.1 gi|330509114|ref|YP_004385542.1| - 0.062 13.2 20.6 9.3 6.3 0.0 8.7 11 0 0 11 11 9 0 Tetratricopeptide repeat RRM_5 PF13893.1 gi|330509114|ref|YP_004385542.1| - 0.17 11.7 0.2 3.9 7.3 0.0 2.6 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PPR PF01535.15 gi|330509114|ref|YP_004385542.1| - 0.41 10.7 8.9 16 5.7 0.0 6.6 8 0 0 8 8 6 0 PPR repeat TPR_11 PF13414.1 gi|330509115|ref|YP_004385543.1| - 1.6e-98 322.4 44.1 1e-13 50.7 0.1 14.8 4 2 12 17 17 16 16 TPR repeat TPR_1 PF00515.23 gi|330509115|ref|YP_004385543.1| - 1.7e-86 280.5 46.1 2.6e-07 29.9 0.0 23.2 24 0 0 24 24 24 17 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330509115|ref|YP_004385543.1| - 3.4e-86 276.4 54.7 0.00018 21.1 0.0 21.9 21 1 1 22 22 22 20 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509115|ref|YP_004385543.1| - 6e-72 237.0 52.7 3.2e-10 40.3 0.0 15.0 9 4 6 15 15 14 14 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509115|ref|YP_004385543.1| - 2.4e-57 186.3 25.3 0.00031 20.7 0.0 17.7 17 2 1 18 18 17 13 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509115|ref|YP_004385543.1| - 1.1e-53 175.0 40.6 0.00026 20.5 0.0 21.0 20 1 1 21 21 21 10 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509115|ref|YP_004385543.1| - 7.4e-52 169.0 60.6 0.00039 20.8 0.1 20.2 10 4 11 21 21 21 15 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509115|ref|YP_004385543.1| - 4.3e-51 170.7 43.5 3.1e-07 30.2 0.1 13.5 6 4 9 16 16 16 12 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509115|ref|YP_004385543.1| - 9e-38 128.4 54.4 1.8e-05 24.9 0.1 14.5 6 5 8 15 15 15 11 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509115|ref|YP_004385543.1| - 5.5e-25 87.0 32.1 0.00034 20.3 0.5 13.1 11 4 6 17 17 15 8 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509115|ref|YP_004385543.1| - 3e-22 78.5 15.4 0.0006 19.8 0.0 10.1 6 4 6 12 12 11 7 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|330509115|ref|YP_004385543.1| - 1.7e-21 74.2 39.6 0.0095 15.6 0.0 16.8 18 0 0 18 18 17 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330509115|ref|YP_004385543.1| - 1.2e-18 66.2 41.6 0.21 12.1 0.0 18.7 20 0 0 20 20 20 4 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330509115|ref|YP_004385543.1| - 3.8e-17 62.4 33.9 0.00045 20.0 0.3 10.5 2 2 9 11 11 11 6 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|330509115|ref|YP_004385543.1| - 6.5e-16 58.1 6.5 0.035 12.8 0.1 9.1 4 3 5 9 9 9 5 NMDA receptor-regulated protein 1 LTD PF00932.14 gi|330509115|ref|YP_004385543.1| - 1.1e-08 35.0 0.2 5.8e-08 32.8 0.1 2.3 1 0 0 1 1 1 1 Lamin Tail Domain TOM20_plant PF06552.7 gi|330509115|ref|YP_004385543.1| - 2.1e-07 30.7 7.8 0.22 11.1 0.1 6.1 5 2 0 5 5 5 2 Plant specific mitochondrial import receptor subunit TOM20 Fis1_TPR_C PF14853.1 gi|330509115|ref|YP_004385543.1| - 1.9e-06 27.6 12.6 24 4.8 0.0 10.2 12 0 0 12 12 12 0 Fis1 C-terminal tetratricopeptide repeat Apc5 PF12862.2 gi|330509115|ref|YP_004385543.1| - 2.2e-06 27.4 1.3 0.43 10.4 0.0 6.8 6 1 0 6 6 5 1 Anaphase-promoting complex subunit 5 PPTA PF01239.17 gi|330509115|ref|YP_004385543.1| - 3.3e-06 26.2 4.2 0.14 11.5 0.0 6.2 8 0 0 8 8 7 2 Protein prenyltransferase alpha subunit repeat FAT PF02259.18 gi|330509115|ref|YP_004385543.1| - 3.2e-05 23.0 10.6 0.13 11.2 0.3 6.4 3 1 3 7 7 7 1 FAT domain TPR_20 PF14561.1 gi|330509115|ref|YP_004385543.1| - 8.6e-05 22.5 12.0 0.75 9.9 0.0 6.4 5 3 2 7 7 5 2 Tetratricopeptide repeat MIT PF04212.13 gi|330509115|ref|YP_004385543.1| - 0.0002 21.1 32.7 6 6.8 0.9 12.6 9 5 3 12 12 12 0 MIT (microtubule interacting and transport) domain BTAD PF03704.12 gi|330509115|ref|YP_004385543.1| - 0.00036 20.8 30.3 0.037 14.3 0.2 8.4 7 2 3 11 11 10 3 Bacterial transcriptional activator domain Alkyl_sulf_dimr PF14863.1 gi|330509115|ref|YP_004385543.1| - 0.004 17.3 13.2 0.28 11.4 0.0 6.2 6 1 0 6 6 6 1 Alkyl sulfatase dimerisation TPR_10 PF13374.1 gi|330509115|ref|YP_004385543.1| - 0.0058 16.5 47.3 1.2 9.1 0.2 13.1 16 0 0 16 16 13 2 Tetratricopeptide repeat MFP2b PF12150.3 gi|330509115|ref|YP_004385543.1| - 0.033 12.8 0.2 0.064 11.9 0.1 1.4 1 0 0 1 1 1 0 Cytosolic motility protein TPR_3 PF07720.7 gi|330509115|ref|YP_004385543.1| - 0.074 12.8 4.2 1.2 8.9 0.0 5.2 7 0 0 7 7 5 0 Tetratricopeptide repeat DUF2225 PF09986.4 gi|330509115|ref|YP_004385543.1| - 2.1 7.7 14.2 4.6 6.6 1.1 5.5 4 2 0 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_4 PF07721.9 gi|330509115|ref|YP_004385543.1| - 5 7.8 39.2 0.7 10.4 0.1 10.7 11 1 0 11 11 8 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330509117|ref|YP_004385545.1| - 2.8e-32 110.1 7.1 3.3e-13 49.0 0.0 4.4 3 2 1 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|330509117|ref|YP_004385545.1| - 1.3e-25 87.8 10.9 8.9e-07 28.2 0.0 6.4 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330509117|ref|YP_004385545.1| - 2.2e-23 80.2 8.1 6.7e-06 25.6 0.0 7.0 6 1 0 6 6 6 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509117|ref|YP_004385545.1| - 4.6e-23 79.4 3.8 2.5e-05 24.1 0.0 6.8 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509117|ref|YP_004385545.1| - 9e-21 74.0 0.0 1.2e-06 29.0 0.0 5.3 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509117|ref|YP_004385545.1| - 3.6e-17 61.3 0.8 0.00058 20.2 0.0 6.5 4 3 3 7 7 6 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509117|ref|YP_004385545.1| - 1.1e-16 60.4 2.2 0.00019 21.2 0.0 4.5 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509117|ref|YP_004385545.1| - 4.7e-16 57.2 18.2 0.0027 17.3 0.0 7.0 5 2 2 7 7 7 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509117|ref|YP_004385545.1| - 2.5e-12 46.9 6.1 0.0011 19.2 0.0 5.1 2 1 4 6 6 6 4 Tetratricopeptide repeat PPTA PF01239.17 gi|330509117|ref|YP_004385545.1| - 2.4e-10 39.3 1.0 0.039 13.3 0.0 4.4 5 0 0 5 5 4 3 Protein prenyltransferase alpha subunit repeat Apc3 PF12895.2 gi|330509117|ref|YP_004385545.1| - 5.2e-09 36.1 3.2 0.01 15.9 0.0 4.0 2 2 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|330509117|ref|YP_004385545.1| - 2.8e-07 30.5 5.6 14 6.4 0.0 6.2 6 0 0 6 6 6 0 Tetratricopeptide repeat NARP1 PF12569.3 gi|330509117|ref|YP_004385545.1| - 4.9e-07 28.8 2.8 0.0046 15.7 0.1 3.1 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 TPR_9 PF13371.1 gi|330509117|ref|YP_004385545.1| - 8.7e-07 28.7 0.0 0.0087 15.8 0.0 4.3 4 1 0 4 4 4 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|330509117|ref|YP_004385545.1| - 2.3e-05 24.4 1.0 1.4 9.0 0.5 4.0 3 2 1 4 4 4 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330509117|ref|YP_004385545.1| - 8.1e-05 22.4 0.6 5.8 6.7 0.0 4.4 3 1 2 5 5 5 0 Domain of Unknown Function (DUF3856) Fis1_TPR_C PF14853.1 gi|330509117|ref|YP_004385545.1| - 0.00048 19.9 0.8 1.6 8.6 0.0 3.9 5 0 0 5 5 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.1 gi|330509117|ref|YP_004385545.1| - 0.00058 19.4 5.4 12 5.9 0.0 6.3 7 1 0 7 7 6 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|330509117|ref|YP_004385545.1| - 0.0011 19.1 0.7 1.3 9.2 0.0 3.7 1 1 4 5 5 5 1 Alkyl sulfatase dimerisation TPR_5 PF12688.2 gi|330509117|ref|YP_004385545.1| - 0.0031 17.5 2.8 0.81 9.7 0.0 3.9 2 1 2 4 4 4 1 Tetratrico peptide repeat BTAD PF03704.12 gi|330509117|ref|YP_004385545.1| - 0.0069 16.6 0.0 1.3 9.3 0.0 3.2 2 1 1 3 3 3 1 Bacterial transcriptional activator domain DUF627 PF04781.7 gi|330509117|ref|YP_004385545.1| - 0.015 14.9 0.6 0.97 9.0 0.0 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF627) TPR_10 PF13374.1 gi|330509117|ref|YP_004385545.1| - 0.054 13.4 1.5 70 3.5 0.0 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF2225 PF09986.4 gi|330509117|ref|YP_004385545.1| - 0.15 11.4 3.7 0.2 11.0 0.1 2.5 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) MIT PF04212.13 gi|330509117|ref|YP_004385545.1| - 0.25 11.2 6.5 9.1 6.2 0.1 4.3 4 2 0 4 4 4 0 MIT (microtubule interacting and transport) domain TPR_21 PF09976.4 gi|330509117|ref|YP_004385545.1| - 1.2 9.0 8.5 0.52 10.2 0.4 3.1 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330509118|ref|YP_004385546.1| - 2.2e-58 191.5 16.6 1.1e-07 31.1 0.0 11.2 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330509118|ref|YP_004385546.1| - 3e-57 185.9 23.5 9.1e-08 31.4 0.0 12.2 12 1 1 13 13 13 9 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330509118|ref|YP_004385546.1| - 6.7e-55 182.6 37.1 4.8e-13 48.5 0.9 8.3 1 1 8 10 10 10 9 TPR repeat TPR_16 PF13432.1 gi|330509118|ref|YP_004385546.1| - 3.3e-43 145.5 26.2 4.8e-11 43.0 0.2 8.7 4 3 5 9 9 9 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509118|ref|YP_004385546.1| - 3.6e-38 126.4 16.9 0.00036 20.0 0.0 10.8 9 2 1 10 10 10 8 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509118|ref|YP_004385546.1| - 3.6e-37 126.1 21.1 1.2e-10 41.1 0.1 7.4 1 1 8 10 10 10 7 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509118|ref|YP_004385546.1| - 1.1e-33 112.5 12.7 0.0005 20.0 0.0 10.8 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509118|ref|YP_004385546.1| - 2.7e-31 105.1 26.0 0.00024 21.4 0.1 11.0 4 3 7 11 11 11 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509118|ref|YP_004385546.1| - 1.3e-30 105.5 33.2 5.4e-06 26.6 1.1 7.7 2 1 5 8 8 8 8 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509118|ref|YP_004385546.1| - 6.6e-21 74.2 9.2 5.5e-06 26.4 0.0 5.0 3 2 2 5 5 5 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|330509118|ref|YP_004385546.1| - 1.7e-18 66.2 10.0 0.00056 19.7 0.0 6.5 4 3 3 7 7 7 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330509118|ref|YP_004385546.1| - 2.4e-17 62.1 19.6 0.0063 16.8 0.0 10.4 11 0 0 11 11 10 4 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330509118|ref|YP_004385546.1| - 6.8e-15 55.1 13.6 0.0003 20.6 0.2 6.9 2 2 4 6 6 6 3 Domain of Unknown Function (DUF3856) TPR_7 PF13176.1 gi|330509118|ref|YP_004385546.1| - 7.4e-14 50.3 15.3 0.037 13.8 0.0 9.0 9 0 0 9 9 8 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330509118|ref|YP_004385546.1| - 1.1e-12 47.3 20.7 0.027 14.4 0.1 9.1 10 0 0 10 10 8 3 Tetratricopeptide repeat TPR_4 PF07721.9 gi|330509118|ref|YP_004385546.1| - 7.3e-08 32.1 17.0 0.1 13.0 0.1 7.7 10 0 0 10 10 7 3 Tetratricopeptide repeat TPR_15 PF13429.1 gi|330509118|ref|YP_004385546.1| - 3.3e-07 29.6 21.1 0.039 13.0 1.0 4.2 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_21 PF09976.4 gi|330509118|ref|YP_004385546.1| - 3.3e-07 30.3 19.9 0.21 11.5 0.0 6.5 4 2 1 6 6 6 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|330509118|ref|YP_004385546.1| - 6.2e-07 28.5 17.0 0.41 9.3 0.0 6.3 3 2 1 6 6 6 4 NMDA receptor-regulated protein 1 BTAD PF03704.12 gi|330509118|ref|YP_004385546.1| - 3.9e-06 27.2 18.1 2 8.7 0.0 7.0 3 2 5 8 8 8 2 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|330509118|ref|YP_004385546.1| - 6.2e-06 26.2 11.1 0.087 12.8 0.5 4.7 3 3 2 5 5 5 2 Tetratrico peptide repeat FAT PF02259.18 gi|330509118|ref|YP_004385546.1| - 5.7e-05 22.2 12.5 0.066 12.1 0.9 4.4 1 1 1 2 2 2 2 FAT domain TPR_3 PF07720.7 gi|330509118|ref|YP_004385546.1| - 7.3e-05 22.4 1.4 0.21 11.4 0.0 5.3 6 0 0 6 6 5 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330509118|ref|YP_004385546.1| - 0.00021 21.0 14.3 0.025 14.4 0.1 7.4 9 1 1 10 10 9 1 Fis1 C-terminal tetratricopeptide repeat Coatomer_E PF04733.9 gi|330509118|ref|YP_004385546.1| - 0.00033 19.9 14.4 0.51 9.4 0.8 5.2 3 2 3 6 6 6 2 Coatomer epsilon subunit PPTA PF01239.17 gi|330509118|ref|YP_004385546.1| - 0.0005 19.2 3.4 6.8 6.2 0.0 5.7 6 0 0 6 6 5 0 Protein prenyltransferase alpha subunit repeat MIT PF04212.13 gi|330509118|ref|YP_004385546.1| - 0.0035 17.1 15.9 0.98 9.3 0.1 7.2 5 1 2 8 8 8 1 MIT (microtubule interacting and transport) domain DUF3775 PF12616.3 gi|330509118|ref|YP_004385546.1| - 0.023 14.4 8.2 1 9.2 0.0 5.5 6 2 1 7 7 5 0 Protein of unknown function (DUF3775) SPOB_a PF14689.1 gi|330509118|ref|YP_004385546.1| - 0.031 13.8 0.5 11 5.7 0.0 3.7 4 0 0 4 4 3 0 Sensor_kinase_SpoOB-type, alpha-helical domain ChAPs PF09295.5 gi|330509118|ref|YP_004385546.1| - 0.033 12.9 1.9 8.9 4.9 0.1 3.3 3 1 0 3 3 3 0 ChAPs (Chs5p-Arf1p-binding proteins) DUF3366 PF11846.3 gi|330509118|ref|YP_004385546.1| - 0.19 11.6 3.8 6.3 6.6 0.0 3.9 2 2 3 5 5 5 0 Domain of unknown function (DUF3366) TOM20_plant PF06552.7 gi|330509118|ref|YP_004385546.1| - 0.2 11.2 8.1 24 4.4 0.0 4.6 3 2 2 5 5 5 0 Plant specific mitochondrial import receptor subunit TOM20 AP2 PF00847.15 gi|330509118|ref|YP_004385546.1| - 0.29 11.3 3.9 1.1 9.5 0.0 3.2 3 0 0 3 3 2 0 AP2 domain DUF2225 PF09986.4 gi|330509118|ref|YP_004385546.1| - 0.36 10.2 4.5 1.2 8.5 0.3 3.1 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_20 PF14561.1 gi|330509118|ref|YP_004385546.1| - 0.44 10.7 19.2 0.58 10.3 0.5 5.9 4 2 2 6 6 6 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330509120|ref|YP_004385548.1| - 1.3e-60 198.6 20.2 2.5e-10 39.4 0.0 11.0 11 0 0 11 11 11 8 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330509120|ref|YP_004385548.1| - 9e-56 185.4 22.7 9.3e-19 66.8 0.3 6.8 3 2 4 7 7 7 6 TPR repeat TPR_2 PF07719.12 gi|330509120|ref|YP_004385548.1| - 1.2e-53 174.6 14.6 1.7e-09 36.8 0.1 10.6 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509120|ref|YP_004385548.1| - 3.1e-40 136.0 7.7 6e-14 52.2 0.0 6.9 3 2 4 7 7 7 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509120|ref|YP_004385548.1| - 8e-39 131.4 16.3 5.8e-09 35.7 0.0 7.0 2 2 6 8 8 8 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509120|ref|YP_004385548.1| - 4.5e-37 123.1 17.9 6.5e-07 29.0 0.0 10.7 10 1 0 10 10 10 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509120|ref|YP_004385548.1| - 2.3e-31 105.4 9.4 9.1e-05 22.7 0.0 9.8 4 2 6 10 10 10 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509120|ref|YP_004385548.1| - 4.1e-31 104.4 20.3 9.7e-05 21.8 0.0 9.8 10 1 0 10 10 9 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509120|ref|YP_004385548.1| - 1.3e-25 89.4 7.1 7.2e-07 29.4 0.0 5.5 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509120|ref|YP_004385548.1| - 2.7e-24 84.8 0.0 4.3e-08 32.8 0.0 4.7 3 1 0 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330509120|ref|YP_004385548.1| - 8e-18 62.7 1.9 0.016 14.9 0.0 8.5 8 0 0 8 8 8 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509120|ref|YP_004385548.1| - 5.6e-17 61.6 4.8 9.9e-06 25.6 0.6 5.4 1 1 6 7 7 7 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|330509120|ref|YP_004385548.1| - 3.1e-16 58.6 9.6 0.084 13.3 0.0 8.5 8 0 0 8 8 8 3 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330509120|ref|YP_004385548.1| - 4.3e-14 52.5 12.5 0.012 15.4 0.0 6.4 3 3 3 6 6 6 4 Domain of Unknown Function (DUF3856) TPR_3 PF07720.7 gi|330509120|ref|YP_004385548.1| - 1.7e-08 34.0 6.1 0.35 10.7 0.0 6.2 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330509120|ref|YP_004385548.1| - 3.4e-07 29.9 11.1 0.87 9.6 0.0 7.6 8 0 0 8 8 8 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|330509120|ref|YP_004385548.1| - 1.4e-06 27.3 1.4 0.27 9.9 0.0 3.8 1 1 0 3 3 3 2 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|330509120|ref|YP_004385548.1| - 2.4e-06 27.3 23.4 0.7 9.8 0.1 7.3 6 1 2 8 8 7 3 MIT (microtubule interacting and transport) domain BTAD PF03704.12 gi|330509120|ref|YP_004385548.1| - 2.6e-06 27.7 1.6 0.019 15.3 0.0 4.4 4 2 1 5 5 3 1 Bacterial transcriptional activator domain Fis1_TPR_C PF14853.1 gi|330509120|ref|YP_004385548.1| - 1.4e-05 24.8 5.7 3.1 7.7 0.0 6.1 5 1 1 6 6 6 1 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.1 gi|330509120|ref|YP_004385548.1| - 9.2e-05 22.4 1.0 6.8 6.8 0.0 4.6 3 3 2 5 5 4 0 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|330509120|ref|YP_004385548.1| - 0.00021 20.4 6.8 1.1 8.4 0.0 5.7 7 0 0 7 7 6 1 SHNi-TPR DUF3808 PF10300.4 gi|330509120|ref|YP_004385548.1| - 0.0012 17.5 0.3 0.0066 15.0 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF3808) DUF3775 PF12616.3 gi|330509120|ref|YP_004385548.1| - 0.0026 17.5 3.5 14 5.5 0.0 5.4 4 2 2 6 6 6 0 Protein of unknown function (DUF3775) TOM20_plant PF06552.7 gi|330509120|ref|YP_004385548.1| - 0.0065 16.0 3.0 0.24 10.9 0.1 3.2 3 1 1 4 4 3 1 Plant specific mitochondrial import receptor subunit TOM20 DUF2225 PF09986.4 gi|330509120|ref|YP_004385548.1| - 0.018 14.5 6.5 0.26 10.6 1.0 3.7 2 2 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) EST1_DNA_bind PF10373.4 gi|330509120|ref|YP_004385548.1| - 0.022 13.9 0.0 1.3 8.2 0.0 3.0 3 0 0 3 3 3 0 Est1 DNA/RNA binding domain AP2 PF00847.15 gi|330509120|ref|YP_004385548.1| - 0.023 14.8 8.1 1.3 9.2 0.2 5.2 5 0 0 5 5 5 0 AP2 domain UFC1 PF08694.6 gi|330509120|ref|YP_004385548.1| - 0.024 14.1 1.8 5.3 6.4 0.0 3.4 3 0 0 3 3 3 0 Ubiquitin-fold modifier-conjugating enzyme 1 Coatomer_E PF04733.9 gi|330509120|ref|YP_004385548.1| - 0.045 12.9 0.3 1.6 7.8 0.1 3.3 3 1 0 3 3 3 0 Coatomer epsilon subunit Alkyl_sulf_dimr PF14863.1 gi|330509120|ref|YP_004385548.1| - 0.051 13.8 5.0 14 5.9 0.1 3.9 3 2 1 4 4 3 0 Alkyl sulfatase dimerisation Apc5 PF12862.2 gi|330509120|ref|YP_004385548.1| - 0.058 13.2 0.8 47 3.9 0.0 4.6 5 0 0 5 5 4 0 Anaphase-promoting complex subunit 5 NRDE-2 PF08424.5 gi|330509120|ref|YP_004385548.1| - 0.059 12.2 1.8 0.091 11.6 0.3 2.0 2 1 0 2 2 2 0 NRDE-2, necessary for RNA interference PPTA PF01239.17 gi|330509120|ref|YP_004385548.1| - 0.41 10.0 13.2 1.5 8.2 0.1 5.0 5 0 0 5 5 5 0 Protein prenyltransferase alpha subunit repeat FAT PF02259.18 gi|330509120|ref|YP_004385548.1| - 1.9 7.3 15.0 1.8 7.4 0.1 4.4 2 1 3 5 5 5 0 FAT domain Sda PF08970.5 gi|330509120|ref|YP_004385548.1| - 2.4 7.6 5.1 15 5.1 0.1 3.9 3 0 0 3 3 3 0 Sporulation inhibitor A Lambda_Kil PF06301.6 gi|330509120|ref|YP_004385548.1| - 2.8 7.4 11.8 18 4.8 0.1 4.7 5 0 0 5 5 4 0 Bacteriophage lambda Kil protein DUF2093 PF09866.4 gi|330509121|ref|YP_004385549.1| - 0.11 11.6 0.9 0.27 10.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2093) AT_hook PF02178.14 gi|330509122|ref|YP_004385550.1| - 0.099 12.3 4.2 0.14 11.8 2.9 1.3 1 0 0 1 1 1 0 AT hook motif DDE_Tnp_1 PF01609.16 gi|330509123|ref|YP_004385551.1| - 2.1e-07 30.7 0.1 2.1e-07 30.6 0.1 1.0 1 0 0 1 1 1 1 Transposase DDE domain IstB_IS21 PF01695.12 gi|330509124|ref|YP_004385552.1| - 6.4e-05 22.4 0.2 7.5e-05 22.2 0.1 1.1 1 0 0 1 1 1 1 IstB-like ATP binding protein IstB_IS21 PF01695.12 gi|330509125|ref|YP_004385553.1| - 2.7e-06 26.9 0.1 4.8e-06 26.1 0.0 1.4 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF3605 PF12239.3 gi|330509125|ref|YP_004385553.1| - 0.0078 16.0 0.0 0.0084 15.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3605) rve PF00665.21 gi|330509126|ref|YP_004385554.1| - 1.6e-22 79.8 0.0 2.7e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|330509126|ref|YP_004385554.1| - 5.2e-05 22.6 0.0 0.00014 21.3 0.0 1.8 1 0 0 1 1 1 1 Integrase core domain HTH_38 PF13936.1 gi|330509126|ref|YP_004385554.1| - 0.0015 18.0 0.2 0.005 16.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|330509126|ref|YP_004385554.1| - 0.0034 17.1 0.0 0.011 15.6 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.7 gi|330509126|ref|YP_004385554.1| - 0.005 16.2 0.0 0.0095 15.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|330509126|ref|YP_004385554.1| - 0.0063 16.1 0.1 0.019 14.5 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|330509126|ref|YP_004385554.1| - 0.0078 15.7 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Mga PF08280.6 gi|330509126|ref|YP_004385554.1| - 0.011 15.4 0.0 0.041 13.6 0.0 2.0 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.11 gi|330509126|ref|YP_004385554.1| - 0.019 14.2 0.1 0.045 13.0 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.1 gi|330509126|ref|YP_004385554.1| - 0.019 15.0 0.3 0.091 12.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix HTH_3 PF01381.17 gi|330509126|ref|YP_004385554.1| - 0.033 14.0 0.0 0.093 12.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_24 PF13412.1 gi|330509126|ref|YP_004385554.1| - 0.034 13.5 0.0 0.081 12.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_40 PF14493.1 gi|330509126|ref|YP_004385554.1| - 0.057 13.6 0.0 0.27 11.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GcrA PF07750.6 gi|330509126|ref|YP_004385554.1| - 0.081 13.1 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 GcrA cell cycle regulator HTH_32 PF13565.1 gi|330509126|ref|YP_004385554.1| - 0.33 11.7 2.7 1.1 10.1 0.1 2.8 2 1 1 3 3 3 0 Homeodomain-like domain Radical_SAM PF04055.16 gi|330509127|ref|YP_004385555.1| - 1.9e-07 31.3 0.1 3.5e-07 30.5 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|330509127|ref|YP_004385555.1| - 0.002 18.1 1.6 0.0059 16.6 1.1 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330509127|ref|YP_004385555.1| - 0.015 15.4 7.4 0.022 14.8 3.5 2.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|330509128|ref|YP_004385556.1| - 6.5e-11 42.6 0.1 1.4e-10 41.6 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330509128|ref|YP_004385556.1| - 8.6e-11 42.1 0.1 8.6e-11 42.1 0.1 2.6 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330509128|ref|YP_004385556.1| - 3.9e-08 33.3 0.0 3.9e-08 33.3 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3116 PF11313.3 gi|330509128|ref|YP_004385556.1| - 0.0031 17.0 0.1 0.13 11.9 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3116) SPASM PF13186.1 gi|330509128|ref|YP_004385556.1| - 0.025 14.8 6.2 0.082 13.2 3.8 2.3 2 0 0 2 2 2 0 Iron-sulfur cluster-binding domain ABC_tran PF00005.22 gi|330509129|ref|YP_004385557.1| - 2.3e-34 118.6 0.0 4e-34 117.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330509129|ref|YP_004385557.1| - 6.8e-10 39.3 0.0 0.00013 22.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|330509129|ref|YP_004385557.1| - 2e-05 23.8 0.0 0.15 11.0 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|330509129|ref|YP_004385557.1| - 9.5e-05 23.2 0.1 0.0003 21.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330509129|ref|YP_004385557.1| - 0.0002 20.6 0.4 0.12 11.5 0.3 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|330509129|ref|YP_004385557.1| - 0.0019 17.7 0.0 0.0039 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_membrane PF00664.18 gi|330509129|ref|YP_004385557.1| - 0.0021 17.5 3.6 0.0021 17.5 2.5 2.1 2 1 0 2 2 2 1 ABC transporter transmembrane region AAA_18 PF13238.1 gi|330509129|ref|YP_004385557.1| - 0.0024 18.1 0.0 0.032 14.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|330509129|ref|YP_004385557.1| - 0.0029 17.3 0.0 0.0078 15.9 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain SRP54 PF00448.17 gi|330509129|ref|YP_004385557.1| - 0.0054 16.1 0.1 0.01 15.2 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|330509129|ref|YP_004385557.1| - 0.0063 16.8 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|330509129|ref|YP_004385557.1| - 0.0081 15.7 0.7 0.019 14.5 0.0 2.0 2 0 0 2 2 1 1 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|330509129|ref|YP_004385557.1| - 0.0096 15.6 0.0 0.025 14.2 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|330509129|ref|YP_004385557.1| - 0.012 14.7 0.0 0.025 13.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_13 PF13166.1 gi|330509129|ref|YP_004385557.1| - 0.013 14.0 0.0 1 7.7 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA PF00004.24 gi|330509129|ref|YP_004385557.1| - 0.014 15.5 0.0 0.036 14.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|330509129|ref|YP_004385557.1| - 0.018 15.0 0.3 0.11 12.4 0.1 2.4 2 1 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|330509129|ref|YP_004385557.1| - 0.027 14.3 0.1 0.11 12.3 0.0 2.1 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.1 gi|330509129|ref|YP_004385557.1| - 0.031 14.2 0.1 0.077 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|330509129|ref|YP_004385557.1| - 0.033 14.3 0.0 0.13 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|330509129|ref|YP_004385557.1| - 0.038 13.1 0.0 0.072 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|330509129|ref|YP_004385557.1| - 0.063 13.7 0.0 0.15 12.5 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein cobW PF02492.14 gi|330509129|ref|YP_004385557.1| - 0.068 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|330509129|ref|YP_004385557.1| - 0.085 12.5 0.0 0.28 10.8 0.0 1.8 2 0 0 2 2 2 0 NTPase NACHT PF05729.7 gi|330509129|ref|YP_004385557.1| - 0.095 12.3 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|330509129|ref|YP_004385557.1| - 0.12 12.2 0.0 0.3 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|330509129|ref|YP_004385557.1| - 0.13 11.6 0.3 0.42 10.0 0.1 1.9 2 1 0 2 2 2 0 AAA-like domain PduV-EutP PF10662.4 gi|330509129|ref|YP_004385557.1| - 0.31 10.5 2.4 5.3 6.5 0.1 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation HTH_20 PF12840.2 gi|330509130|ref|YP_004385558.1| - 1.4e-07 31.2 0.0 3.2e-07 30.0 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|330509130|ref|YP_004385558.1| - 2.6e-07 30.2 0.1 4.9e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|330509130|ref|YP_004385558.1| - 7.4e-06 26.1 0.0 1.3e-05 25.4 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|330509130|ref|YP_004385558.1| - 3.6e-05 23.3 0.5 6.4e-05 22.5 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF1495 PF07381.6 gi|330509130|ref|YP_004385558.1| - 0.0012 18.4 2.2 0.002 17.7 0.3 2.2 2 1 0 2 2 2 1 Winged helix DNA-binding domain (DUF1495) HTH_IclR PF09339.5 gi|330509130|ref|YP_004385558.1| - 0.0017 17.8 0.1 0.0036 16.8 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|330509130|ref|YP_004385558.1| - 0.0019 17.9 1.2 0.0029 17.3 0.8 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|330509130|ref|YP_004385558.1| - 0.0028 17.6 0.1 0.0043 17.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|330509130|ref|YP_004385558.1| - 0.0052 16.5 0.0 0.0071 16.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF2250 PF10007.4 gi|330509130|ref|YP_004385558.1| - 0.025 14.4 0.2 1.1 9.2 0.0 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4364 PF14277.1 gi|330509130|ref|YP_004385558.1| - 0.047 13.3 1.5 0.1 12.2 1.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) MarR PF01047.17 gi|330509130|ref|YP_004385558.1| - 0.079 12.6 0.3 0.13 12.0 0.2 1.3 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|330509130|ref|YP_004385558.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 MarR family DivIC PF04977.10 gi|330509131|ref|YP_004385559.1| - 0.0017 17.7 1.3 0.012 15.1 0.1 2.4 2 0 0 2 2 2 1 Septum formation initiator bZIP_2 PF07716.10 gi|330509131|ref|YP_004385559.1| - 0.013 15.3 3.2 0.013 15.3 2.2 2.2 2 0 0 2 2 2 0 Basic region leucine zipper DUF677 PF05055.7 gi|330509131|ref|YP_004385559.1| - 0.055 12.1 0.1 0.065 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Latarcin PF10279.4 gi|330509131|ref|YP_004385559.1| - 0.095 12.9 0.7 1.5 9.0 0.0 2.5 3 0 0 3 3 2 0 Latarcin precursor HWE_HK PF07536.9 gi|330509131|ref|YP_004385559.1| - 0.1 13.0 0.3 0.35 11.3 0.0 2.0 3 0 0 3 3 2 0 HWE histidine kinase ADIP PF11559.3 gi|330509131|ref|YP_004385559.1| - 0.11 12.3 4.2 0.29 11.0 2.9 1.7 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding Rhabdo_M2 PF04785.7 gi|330509131|ref|YP_004385559.1| - 0.12 11.3 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Rhabdovirus matrix protein M2 DUF1640 PF07798.6 gi|330509131|ref|YP_004385559.1| - 0.2 11.6 2.7 1.6 8.7 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1640) Syntaxin PF00804.20 gi|330509131|ref|YP_004385559.1| - 0.22 11.7 3.9 0.98 9.6 2.7 1.9 1 1 1 2 2 2 0 Syntaxin bZIP_1 PF00170.16 gi|330509131|ref|YP_004385559.1| - 1.3 9.0 5.2 0.26 11.2 0.4 2.2 2 0 0 2 2 2 0 bZIP transcription factor PspB PF06667.7 gi|330509131|ref|YP_004385559.1| - 1.4 8.8 3.6 5.2 7.0 0.6 2.5 3 0 0 3 3 3 0 Phage shock protein B NYD-SP28_assoc PF14775.1 gi|330509131|ref|YP_004385559.1| - 4.1 7.1 6.9 1.2 8.8 0.7 2.7 3 0 0 3 3 3 0 Sperm tail C-terminal domain FlgN PF05130.7 gi|330509131|ref|YP_004385559.1| - 4.9 7.3 9.1 8 6.6 0.9 2.3 1 1 0 2 2 2 0 FlgN protein HTH_Tnp_1 PF01527.15 gi|330509132|ref|YP_004385560.1| - 0.0094 15.8 0.0 0.012 15.5 0.0 1.4 1 1 0 1 1 1 1 Transposase TPR_1 PF00515.23 gi|330509134|ref|YP_004385562.1| - 7.5e-22 75.9 1.0 6.3e-08 31.8 0.0 5.8 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|330509134|ref|YP_004385562.1| - 7.1e-20 70.4 4.0 2.9e-12 46.0 0.6 4.1 4 0 0 4 4 4 2 TPR repeat TPR_2 PF07719.12 gi|330509134|ref|YP_004385562.1| - 5.1e-18 63.4 3.8 5.3e-07 29.0 0.0 5.6 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509134|ref|YP_004385562.1| - 7.2e-16 57.9 6.2 1.8e-08 34.2 0.3 3.4 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509134|ref|YP_004385562.1| - 1.4e-12 47.9 0.7 1.8e-05 25.2 0.0 4.4 1 1 4 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509134|ref|YP_004385562.1| - 2e-12 46.5 0.4 0.00029 21.2 0.2 4.7 1 1 3 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509134|ref|YP_004385562.1| - 4.9e-12 44.7 10.4 1.3e-06 27.7 0.2 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509134|ref|YP_004385562.1| - 3.2e-11 42.5 4.4 0.0036 17.3 0.0 5.4 4 1 0 4 4 4 3 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330509134|ref|YP_004385562.1| - 1.2e-06 28.4 0.6 0.005 16.6 0.1 3.3 2 1 2 4 4 4 2 Domain of Unknown Function (DUF3856) PPTA PF01239.17 gi|330509134|ref|YP_004385562.1| - 2.6e-06 26.5 1.1 0.44 9.9 0.0 3.6 3 0 0 3 3 3 2 Protein prenyltransferase alpha subunit repeat Apc3 PF12895.2 gi|330509134|ref|YP_004385562.1| - 4.5e-06 26.7 0.2 0.0052 16.8 0.1 3.0 2 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.3 gi|330509134|ref|YP_004385562.1| - 5.6e-06 25.3 0.5 0.0093 14.7 0.1 2.3 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_6 PF13174.1 gi|330509134|ref|YP_004385562.1| - 1.1e-05 25.5 0.6 1.1 9.9 0.1 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509134|ref|YP_004385562.1| - 6.9e-05 22.6 0.0 0.023 14.5 0.0 3.3 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509134|ref|YP_004385562.1| - 9.7e-05 22.6 8.5 0.0011 19.1 0.4 3.9 2 1 2 4 4 4 2 Tetratricopeptide repeat MIT PF04212.13 gi|330509134|ref|YP_004385562.1| - 0.00038 20.2 1.4 0.072 12.9 0.1 3.5 2 1 2 4 4 4 1 MIT (microtubule interacting and transport) domain TPR_7 PF13176.1 gi|330509134|ref|YP_004385562.1| - 0.001 18.6 0.4 0.036 13.8 0.0 3.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|330509134|ref|YP_004385562.1| - 0.024 14.7 3.3 16 5.6 0.0 3.5 2 1 2 4 4 3 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330509134|ref|YP_004385562.1| - 0.024 14.5 0.1 0.16 11.9 0.0 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330509134|ref|YP_004385562.1| - 0.057 13.3 0.3 3.9 7.4 0.0 3.3 3 1 1 4 4 3 0 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.12 gi|330509134|ref|YP_004385562.1| - 0.06 13.6 0.0 0.2 11.9 0.0 1.7 1 1 1 2 2 2 0 Bacterial transcriptional activator domain SNAP PF14938.1 gi|330509134|ref|YP_004385562.1| - 0.78 8.8 5.1 5.4 6.0 3.5 2.3 1 1 0 1 1 1 0 Soluble NSF attachment protein, SNAP DUF3770 PF12603.3 gi|330509135|ref|YP_004385563.1| - 0.032 13.3 1.5 0.037 13.1 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3770) ABC_tran PF00005.22 gi|330509136|ref|YP_004385564.1| - 7.2e-09 36.0 0.0 1e-08 35.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_15 PF13175.1 gi|330509136|ref|YP_004385564.1| - 0.029 13.4 0.0 0.037 13.0 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_21 PF13304.1 gi|330509136|ref|YP_004385564.1| - 0.14 12.0 0.0 0.18 11.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF3770 PF12603.3 gi|330509138|ref|YP_004385566.1| - 0.022 13.9 0.4 0.037 13.1 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3770) ABC_tran PF00005.22 gi|330509139|ref|YP_004385567.1| - 5.1e-10 39.7 0.0 7.2e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330509139|ref|YP_004385567.1| - 0.0025 17.8 0.0 0.0028 17.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|330509139|ref|YP_004385567.1| - 0.025 13.6 0.0 0.032 13.2 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|330509139|ref|YP_004385567.1| - 0.038 13.2 0.0 0.044 13.0 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain TPR_11 PF13414.1 gi|330509140|ref|YP_004385568.1| - 1.6e-54 181.4 12.0 5e-14 51.6 0.0 4.2 2 1 3 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|330509140|ref|YP_004385568.1| - 1.1e-53 176.7 8.4 7.4e-09 34.8 0.3 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330509140|ref|YP_004385568.1| - 2.3e-48 158.2 4.5 3.5e-08 32.7 0.3 7.2 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330509140|ref|YP_004385568.1| - 1.2e-41 140.4 9.2 7.5e-13 48.2 0.0 4.7 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330509140|ref|YP_004385568.1| - 3.7e-41 135.8 14.1 9e-07 28.2 0.0 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330509140|ref|YP_004385568.1| - 4.7e-35 119.5 0.0 3.1e-10 40.4 0.0 4.3 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330509140|ref|YP_004385568.1| - 5.7e-28 94.8 0.0 0.00034 20.9 0.0 7.0 1 1 6 7 7 7 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330509140|ref|YP_004385568.1| - 1e-27 93.9 2.6 0.00033 20.6 0.0 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330509140|ref|YP_004385568.1| - 9.9e-21 73.8 1.2 7e-06 26.2 0.0 4.7 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330509140|ref|YP_004385568.1| - 1.5e-20 72.8 0.0 2.2e-05 24.2 0.0 4.3 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330509140|ref|YP_004385568.1| - 7.3e-18 63.7 3.6 0.14 12.6 0.1 7.3 6 1 1 7 7 7 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|330509140|ref|YP_004385568.1| - 1.1e-16 60.7 3.0 3.6e-05 23.8 0.0 3.6 1 1 3 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|330509140|ref|YP_004385568.1| - 2.2e-16 58.2 0.3 0.16 11.8 0.0 6.4 6 0 0 6 6 6 4 Tetratricopeptide repeat DUF3856 PF12968.2 gi|330509140|ref|YP_004385568.1| - 3.9e-11 42.9 10.0 0.011 15.6 0.1 6.7 2 2 3 6 6 6 2 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|330509140|ref|YP_004385568.1| - 2.3e-08 33.2 2.0 0.091 11.4 0.2 3.5 1 1 1 3 3 3 3 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|330509140|ref|YP_004385568.1| - 2.8e-08 33.5 16.8 0.0016 18.2 1.1 5.6 4 1 1 5 5 5 3 MIT (microtubule interacting and transport) domain RPN7 PF10602.4 gi|330509140|ref|YP_004385568.1| - 3.8e-07 29.6 2.7 0.32 10.3 0.1 4.5 4 1 1 5 5 5 2 26S proteasome subunit RPN7 SNAP PF14938.1 gi|330509140|ref|YP_004385568.1| - 9.6e-07 28.2 5.5 4.5e-05 22.7 0.2 3.3 1 1 1 3 3 3 1 Soluble NSF attachment protein, SNAP BTAD PF03704.12 gi|330509140|ref|YP_004385568.1| - 1.6e-05 25.2 1.9 0.82 9.9 0.0 4.6 1 1 1 2 2 2 2 Bacterial transcriptional activator domain TPR_20 PF14561.1 gi|330509140|ref|YP_004385568.1| - 3e-05 24.0 0.0 0.04 14.0 0.0 3.6 2 1 2 4 4 3 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|330509140|ref|YP_004385568.1| - 5.9e-05 23.0 8.2 0.17 11.8 0.0 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330509140|ref|YP_004385568.1| - 0.00011 22.0 4.4 3 7.9 0.0 5.6 7 0 0 7 7 7 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|330509140|ref|YP_004385568.1| - 0.00016 21.5 4.0 0.87 9.5 0.1 5.5 6 0 0 6 6 6 1 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.1 gi|330509140|ref|YP_004385568.1| - 0.00086 18.4 0.7 0.017 14.1 0.2 2.8 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_5 PF12688.2 gi|330509140|ref|YP_004385568.1| - 0.0017 18.4 0.3 8.7 6.4 0.0 3.8 2 1 1 4 4 4 0 Tetratrico peptide repeat Ribosomal_S16 PF00886.14 gi|330509140|ref|YP_004385568.1| - 0.004 16.8 2.2 1.2 8.9 0.0 3.8 3 1 1 4 4 4 1 Ribosomal protein S16 PPR PF01535.15 gi|330509140|ref|YP_004385568.1| - 0.0066 16.3 5.4 31 4.8 0.0 5.7 6 0 0 6 6 6 0 PPR repeat FAT PF02259.18 gi|330509140|ref|YP_004385568.1| - 0.019 13.9 2.4 1.3 7.8 0.2 3.5 2 1 1 3 3 3 0 FAT domain SHNi-TPR PF10516.4 gi|330509140|ref|YP_004385568.1| - 0.06 12.6 0.0 18 4.6 0.0 3.5 4 0 0 4 4 4 0 SHNi-TPR FixH PF05751.6 gi|330509140|ref|YP_004385568.1| - 0.061 13.1 0.1 0.1 12.4 0.1 1.5 1 1 0 1 1 1 0 FixH PPTA PF01239.17 gi|330509140|ref|YP_004385568.1| - 0.061 12.7 0.0 17 4.9 0.0 2.8 2 0 0 2 2 2 0 Protein prenyltransferase alpha subunit repeat NRDE-2 PF08424.5 gi|330509140|ref|YP_004385568.1| - 0.061 12.1 1.4 0.81 8.5 0.0 2.2 2 0 0 2 2 2 0 NRDE-2, necessary for RNA interference Foie-gras_1 PF11817.3 gi|330509140|ref|YP_004385568.1| - 0.064 12.7 0.7 7.1 6.0 0.0 2.9 3 0 0 3 3 3 0 Foie gras liver health family 1 DUF627 PF04781.7 gi|330509140|ref|YP_004385568.1| - 0.08 12.5 0.4 17 5.0 0.0 3.7 3 1 0 3 3 3 0 Protein of unknown function (DUF627) Glucosaminidase PF01832.15 gi|330509140|ref|YP_004385568.1| - 0.081 13.0 2.9 4.5 7.3 0.1 3.1 2 1 1 3 3 3 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Sec5 PF15469.1 gi|330509140|ref|YP_004385568.1| - 0.44 10.2 2.0 14 5.3 0.4 3.0 2 1 0 2 2 2 0 Exocyst complex component Sec5 Lambda_Kil PF06301.6 gi|330509140|ref|YP_004385568.1| - 0.46 9.9 11.5 2 7.8 0.0 5.4 6 0 0 6 6 6 0 Bacteriophage lambda Kil protein Sda PF08970.5 gi|330509140|ref|YP_004385568.1| - 7.4 6.1 6.1 24 4.5 0.1 3.4 4 0 0 4 4 3 0 Sporulation inhibitor A FIVAR PF07554.8 gi|330509140|ref|YP_004385568.1| - 8.9 6.6 9.7 42 4.5 0.1 4.8 5 0 0 5 5 5 0 Uncharacterised Sugar-binding Domain HTH_26 PF13443.1 gi|330509143|ref|YP_004385571.1| - 0.063 13.4 0.0 0.16 12.2 0.0 1.7 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain RPA_interact_N PF14766.1 gi|330509143|ref|YP_004385571.1| - 0.078 12.4 1.0 0.19 11.1 0.7 1.6 1 0 0 1 1 1 0 Replication protein A interacting N-terminal DivIC PF04977.10 gi|330509143|ref|YP_004385571.1| - 1.8 8.0 4.5 0.8 9.2 0.4 2.2 2 1 0 2 2 2 0 Septum formation initiator Radical_SAM PF04055.16 gi|330509144|ref|YP_004385572.1| - 8.1e-12 45.6 0.2 8.1e-12 45.6 0.2 2.7 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330509144|ref|YP_004385572.1| - 1.1e-09 38.4 0.2 1.1e-09 38.4 0.1 2.7 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330509144|ref|YP_004385572.1| - 1.3e-07 31.6 0.0 1.3e-07 31.6 0.0 2.8 3 0 0 3 3 3 1 4Fe-4S single cluster domain Glucosaminidase PF01832.15 gi|330509144|ref|YP_004385572.1| - 0.19 11.8 1.2 6.6 6.8 0.1 3.2 4 0 0 4 4 4 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Radical_SAM PF04055.16 gi|330509145|ref|YP_004385573.1| - 1.1e-05 25.7 0.1 1.7e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|330509145|ref|YP_004385573.1| - 0.00024 21.3 0.9 0.00024 21.3 0.6 2.6 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain ABC_tran PF00005.22 gi|330509146|ref|YP_004385574.1| - 1.9e-28 99.4 0.0 3.7e-28 98.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|330509146|ref|YP_004385574.1| - 1.3e-21 77.2 13.4 1.9e-21 76.7 9.3 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|330509146|ref|YP_004385574.1| - 7.8e-13 49.0 0.7 9.7e-12 45.4 0.5 2.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330509146|ref|YP_004385574.1| - 2e-11 43.5 3.0 7.1e-09 35.2 2.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|330509146|ref|YP_004385574.1| - 9.2e-05 21.6 6.3 0.0037 16.3 0.1 2.8 3 0 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|330509146|ref|YP_004385574.1| - 0.00013 22.3 6.7 0.00035 20.9 3.5 2.5 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|330509146|ref|YP_004385574.1| - 0.00032 20.8 1.6 0.0045 17.1 0.3 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|330509146|ref|YP_004385574.1| - 0.0015 17.1 1.1 0.2 10.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|330509146|ref|YP_004385574.1| - 0.01 15.5 0.6 5 6.7 0.0 2.3 2 0 0 2 2 2 0 NTPase DUF258 PF03193.11 gi|330509146|ref|YP_004385574.1| - 0.017 14.3 0.0 0.037 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|330509146|ref|YP_004385574.1| - 0.02 13.4 0.1 2.2 6.7 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF2603 PF10788.4 gi|330509146|ref|YP_004385574.1| - 0.022 14.5 2.5 0.69 9.6 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2603) AAA_29 PF13555.1 gi|330509146|ref|YP_004385574.1| - 0.041 13.4 0.0 0.093 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|330509146|ref|YP_004385574.1| - 0.055 13.6 0.0 0.3 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|330509146|ref|YP_004385574.1| - 0.058 14.2 0.1 0.15 12.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain ABC_membrane_3 PF13748.1 gi|330509146|ref|YP_004385574.1| - 0.24 10.4 6.5 0.93 8.4 4.5 2.0 1 1 0 1 1 1 0 ABC transporter transmembrane region Peptidase_S8 PF00082.17 gi|330509147|ref|YP_004385575.1| - 9.4e-30 103.7 0.6 9.4e-30 103.7 0.4 1.8 2 0 0 2 2 2 1 Subtilase family fn3 PF00041.16 gi|330509147|ref|YP_004385575.1| - 0.01 15.9 0.6 0.058 13.5 0.1 2.5 2 0 0 2 2 2 0 Fibronectin type III domain Big_1 PF02369.11 gi|330509147|ref|YP_004385575.1| - 0.076 12.9 0.5 0.21 11.5 0.3 1.8 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) Peptidase_S8 PF00082.17 gi|330509148|ref|YP_004385576.1| - 3.6e-34 118.2 2.5 6.2e-34 117.4 1.7 1.4 1 0 0 1 1 1 1 Subtilase family fn3 PF00041.16 gi|330509148|ref|YP_004385576.1| - 0.00082 19.4 1.5 0.0013 18.8 0.3 1.9 2 0 0 2 2 2 1 Fibronectin type III domain