# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Peptidase_S8 PF00082.22 gi|330506320|ref|YP_004382748.1| - 3.5e-28 98.7 0.3 1.8e-27 96.4 0.3 2.1 1 1 0 1 1 1 1 Subtilase family EF-hand_6 PF13405.6 gi|330506320|ref|YP_004382748.1| - 4.5 7.5 4.6 34 4.7 0.4 3.4 3 0 0 3 3 3 0 EF-hand domain Transposase_mut PF00872.18 gi|330506321|ref|YP_004382749.1| - 4.9e-101 338.3 0.1 6.1e-101 338.0 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|330506321|ref|YP_004382749.1| - 1.2e-09 38.4 0.0 2.1e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 MULE transposase domain HTH_26 PF13443.6 gi|330506321|ref|YP_004382749.1| - 0.014 15.8 0.0 0.094 13.2 0.0 2.2 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_12 PF08461.10 gi|330506321|ref|YP_004382749.1| - 0.076 13.0 0.9 0.29 11.1 0.1 2.4 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain Cation_ATPase_N PF00690.26 gi|330506321|ref|YP_004382749.1| - 0.16 11.7 0.0 4.7 7.0 0.0 2.7 2 0 0 2 2 2 0 Cation transporter/ATPase, N-terminus Peptidase_S8 PF00082.22 gi|330506322|ref|YP_004382750.1| - 5e-28 98.2 0.3 8.4e-28 97.5 0.3 1.3 1 0 0 1 1 1 1 Subtilase family Invasin_D3 PF09134.10 gi|330506322|ref|YP_004382750.1| - 0.0053 17.0 0.1 0.031 14.6 0.1 2.4 1 0 0 1 1 1 1 Invasin, domain 3 DUF4959 PF16323.5 gi|330506322|ref|YP_004382750.1| - 0.0053 17.0 2.3 0.012 15.9 0.1 2.8 4 0 0 4 4 4 1 Domain of unknown function (DUF4959) fn3 PF00041.21 gi|330506322|ref|YP_004382750.1| - 0.0089 16.4 0.6 0.026 14.9 0.2 2.0 2 0 0 2 2 2 1 Fibronectin type III domain EF-hand_6 PF13405.6 gi|330506322|ref|YP_004382750.1| - 0.2 11.7 2.8 4.9 7.3 0.0 3.3 3 0 0 3 3 3 0 EF-hand domain EF-hand_1 PF00036.32 gi|330506322|ref|YP_004382750.1| - 0.67 9.6 2.3 38 4.1 0.0 3.3 3 0 0 3 3 3 0 EF hand Peptidase_S9 PF00326.21 gi|330506323|ref|YP_004382751.1| - 4.5e-45 153.7 0.0 6.2e-45 153.3 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|330506323|ref|YP_004382751.1| - 3.4e-12 46.5 0.0 3.7e-09 36.6 0.0 2.2 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|330506323|ref|YP_004382751.1| - 3e-10 40.2 1.9 1.6e-07 31.2 0.3 2.7 2 1 1 3 3 3 2 alpha/beta hydrolase fold DLH PF01738.18 gi|330506323|ref|YP_004382751.1| - 4.7e-09 36.1 0.0 2.3e-08 33.9 0.0 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|330506323|ref|YP_004382751.1| - 5e-08 32.5 0.1 0.0023 17.2 0.1 2.2 1 1 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|330506323|ref|YP_004382751.1| - 1.3e-07 32.4 0.1 7.8e-07 29.9 0.1 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family LIP PF03583.14 gi|330506323|ref|YP_004382751.1| - 0.00036 19.9 0.0 0.0016 17.8 0.0 1.9 2 0 0 2 2 2 1 Secretory lipase BAAT_C PF08840.11 gi|330506323|ref|YP_004382751.1| - 0.00054 19.9 0.0 0.0016 18.4 0.0 1.7 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.13 gi|330506323|ref|YP_004382751.1| - 0.003 17.5 0.0 0.0089 15.9 0.0 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold AXE1 PF05448.12 gi|330506323|ref|YP_004382751.1| - 0.0038 16.0 0.0 0.041 12.6 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Esterase PF00756.20 gi|330506323|ref|YP_004382751.1| - 0.037 13.7 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative esterase DUF2920 PF11144.8 gi|330506323|ref|YP_004382751.1| - 0.077 12.2 0.0 0.23 10.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) TRAM1 PF08390.11 gi|330506324|ref|YP_004382752.1| - 0.06 13.0 0.0 0.089 12.5 0.0 1.5 1 1 0 1 1 1 0 TRAM1-like protein TPR_1 PF00515.28 gi|330506325|ref|YP_004382753.1| - 1.7e-41 138.4 9.4 8.8e-06 25.3 0.0 8.3 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330506325|ref|YP_004382753.1| - 2.1e-35 118.0 11.1 0.00012 22.0 0.0 9.3 8 1 0 8 8 8 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330506325|ref|YP_004382753.1| - 2.2e-35 117.9 13.0 5.6e-05 23.0 0.0 8.4 8 1 0 8 8 8 8 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330506325|ref|YP_004382753.1| - 3.7e-31 106.5 10.2 0.0001 21.9 0.1 7.3 4 3 3 7 7 7 7 TPR repeat TPR_17 PF13431.6 gi|330506325|ref|YP_004382753.1| - 5.1e-31 104.8 9.5 4.7e-06 26.6 0.4 7.2 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330506325|ref|YP_004382753.1| - 2.8e-28 98.2 9.7 2.4e-09 37.6 0.1 5.1 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330506325|ref|YP_004382753.1| - 1.1e-26 93.2 12.2 2.2e-07 31.4 0.0 5.3 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330506325|ref|YP_004382753.1| - 8.9e-26 88.4 12.3 1.1e-05 25.9 0.3 8.0 3 2 5 8 8 8 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330506325|ref|YP_004382753.1| - 1.7e-20 73.0 9.5 7.8e-05 22.9 0.0 5.5 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330506325|ref|YP_004382753.1| - 2.1e-20 72.7 1.9 1.1e-05 25.5 0.3 4.1 2 2 2 4 4 4 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330506325|ref|YP_004382753.1| - 5.1e-18 65.1 4.9 4.5e-06 26.8 0.2 4.1 1 1 2 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|330506325|ref|YP_004382753.1| - 4.1e-15 55.3 10.1 0.26 12.0 0.0 8.4 8 1 0 8 8 8 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330506325|ref|YP_004382753.1| - 1.2e-11 44.5 2.3 0.0061 16.6 0.0 4.5 5 1 1 6 6 5 3 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|330506325|ref|YP_004382753.1| - 2.3e-10 40.1 2.0 0.0056 15.7 0.0 4.0 1 1 2 4 4 4 4 NMDA receptor-regulated protein 1 TPR_20 PF14561.6 gi|330506325|ref|YP_004382753.1| - 2.7e-10 40.5 1.8 0.11 12.9 0.1 4.6 2 2 3 5 5 5 3 Tetratricopeptide repeat BTAD PF03704.17 gi|330506325|ref|YP_004382753.1| - 5.2e-09 36.7 6.5 9e-05 22.9 2.9 3.3 2 1 1 3 3 3 3 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|330506325|ref|YP_004382753.1| - 1e-08 35.3 8.4 1 9.4 0.0 6.1 1 1 3 5 5 5 2 Domain of Unknown Function (DUF3856) TPR_4 PF07721.14 gi|330506325|ref|YP_004382753.1| - 4.9e-08 32.9 2.7 0.023 15.3 0.0 6.0 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330506325|ref|YP_004382753.1| - 1.1e-06 28.2 6.2 23 5.3 0.0 7.7 8 0 0 8 8 8 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330506325|ref|YP_004382753.1| - 1.4e-06 27.9 13.7 4.7 7.2 0.0 7.2 7 0 0 7 7 7 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|330506325|ref|YP_004382753.1| - 3e-06 27.7 4.0 0.31 11.5 0.1 4.5 1 1 3 5 5 5 1 Alkyl sulfatase dimerisation SRP_TPR_like PF17004.5 gi|330506325|ref|YP_004382753.1| - 3.7e-05 23.7 0.3 0.018 15.0 0.0 2.9 1 1 3 4 4 4 1 Putative TPR-like repeat ChAPs PF09295.10 gi|330506325|ref|YP_004382753.1| - 0.00011 21.3 0.3 0.01 14.8 0.0 2.5 1 1 2 3 3 3 1 ChAPs (Chs5p-Arf1p-binding proteins) RPN7 PF10602.9 gi|330506325|ref|YP_004382753.1| - 0.00091 19.0 2.1 0.63 9.7 0.2 4.1 1 1 2 3 3 3 1 26S proteasome subunit RPN7 TPR_3 PF07720.12 gi|330506325|ref|YP_004382753.1| - 0.0028 17.6 1.0 34 4.6 0.0 4.5 5 0 0 5 5 4 0 Tetratricopeptide repeat NRBF2_MIT PF17169.4 gi|330506325|ref|YP_004382753.1| - 0.018 15.2 0.4 3.4 7.9 0.0 3.1 2 1 1 3 3 3 0 MIT domain of nuclear receptor-binding factor 2 DUF5113 PF17140.4 gi|330506325|ref|YP_004382753.1| - 0.019 14.8 1.5 2 8.2 0.0 3.8 2 2 2 4 4 4 0 Domain of unknown function (DUF5113) TPR_15 PF13429.6 gi|330506325|ref|YP_004382753.1| - 0.02 14.1 8.5 4.6 6.4 7.2 2.8 1 1 1 2 2 2 0 Tetratricopeptide repeat YfiO PF13525.6 gi|330506325|ref|YP_004382753.1| - 0.027 14.2 2.3 6.2 6.5 0.1 3.2 1 1 1 3 3 3 0 Outer membrane lipoprotein DUF2225 PF09986.9 gi|330506325|ref|YP_004382753.1| - 0.036 13.8 3.7 0.19 11.4 0.1 3.0 2 2 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) HrpB1_HrpK PF09613.10 gi|330506325|ref|YP_004382753.1| - 0.044 13.4 0.1 0.2 11.3 0.0 2.1 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) ANAPC5 PF12862.7 gi|330506325|ref|YP_004382753.1| - 0.097 12.8 0.4 52 4.0 0.0 3.9 3 1 2 5 5 4 0 Anaphase-promoting complex subunit 5 LVIVD PF08309.11 gi|330506326|ref|YP_004382754.1| - 9.6e-41 136.8 22.0 1.8e-14 52.7 0.5 7.8 7 2 0 7 7 7 6 LVIVD repeat Beta_propel PF09826.9 gi|330506326|ref|YP_004382754.1| - 7.2e-07 28.4 0.0 0.023 13.6 0.0 2.6 2 1 0 2 2 2 2 Beta propeller domain Hydrolase_4 PF12146.8 gi|330506327|ref|YP_004382755.1| - 0.0026 17.1 0.0 0.027 13.7 0.0 2.0 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|330506327|ref|YP_004382755.1| - 0.0048 16.4 0.1 0.011 15.3 0.1 1.6 1 0 0 1 1 1 1 Prolyl oligopeptidase family LCM PF04072.14 gi|330506328|ref|YP_004382756.1| - 0.14 12.1 0.3 0.19 11.7 0.3 1.4 1 1 0 1 1 1 0 Leucine carboxyl methyltransferase DUF362 PF04015.12 gi|330506329|ref|YP_004382757.1| - 5.3e-44 150.9 0.0 7.4e-44 150.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|330506329|ref|YP_004382757.1| - 1.1e-13 50.4 9.1 8.3e-07 28.6 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330506329|ref|YP_004382757.1| - 1e-10 41.2 9.6 5.9e-06 26.1 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330506329|ref|YP_004382757.1| - 1.8e-09 38.0 19.7 6.5e-08 33.1 10.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330506329|ref|YP_004382757.1| - 6.5e-09 35.8 17.9 6.7e-06 26.1 11.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330506329|ref|YP_004382757.1| - 1.9e-08 35.1 6.8 0.0015 19.4 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|330506329|ref|YP_004382757.1| - 2.4e-08 33.6 11.0 0.00034 20.5 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330506329|ref|YP_004382757.1| - 5.9e-08 32.7 8.2 1.2e-07 31.8 8.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330506329|ref|YP_004382757.1| - 1.9e-05 24.7 10.1 5.2e-05 23.3 10.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330506329|ref|YP_004382757.1| - 4.3e-05 23.7 8.8 0.028 14.9 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330506329|ref|YP_004382757.1| - 0.00018 22.0 11.8 0.01 16.4 1.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330506329|ref|YP_004382757.1| - 0.012 16.5 9.8 0.026 15.3 1.3 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Lar_N PF09861.9 gi|330506329|ref|YP_004382757.1| - 0.029 13.6 0.3 0.045 12.9 0.3 1.3 1 0 0 1 1 1 0 Lactate racemase N-terminal domain Fer4_13 PF13370.6 gi|330506329|ref|YP_004382757.1| - 0.034 14.7 7.0 0.58 10.8 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|330506329|ref|YP_004382757.1| - 0.063 14.0 11.6 0.12 13.2 1.0 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|330506329|ref|YP_004382757.1| - 0.12 12.9 12.6 0.87 10.1 2.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330506329|ref|YP_004382757.1| - 0.16 12.9 18.8 0.33 12.0 5.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain FMN_red PF03358.15 gi|330506330|ref|YP_004382758.1| - 2.2e-30 105.4 0.0 2.6e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|330506330|ref|YP_004382758.1| - 1.6e-10 41.0 0.0 1.9e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold IpaB_EvcA PF03278.13 gi|330506330|ref|YP_004382758.1| - 0.046 13.4 0.0 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 IpaB/EvcA family HAD PF12710.7 gi|330506331|ref|YP_004382759.1| - 8.1e-18 65.5 0.1 1.3e-17 64.8 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|330506331|ref|YP_004382759.1| - 2.8e-16 60.5 0.2 5.4e-16 59.5 0.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ACT PF01842.25 gi|330506331|ref|YP_004382759.1| - 3.4e-11 42.7 0.5 4.3e-05 23.2 0.1 2.7 2 0 0 2 2 2 2 ACT domain Hydrolase_3 PF08282.12 gi|330506331|ref|YP_004382759.1| - 2e-09 37.6 3.1 4.5e-09 36.4 0.2 2.5 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase ACT_6 PF13740.6 gi|330506331|ref|YP_004382759.1| - 7.1e-09 35.5 0.1 0.0031 17.5 0.0 2.5 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|330506331|ref|YP_004382759.1| - 4.4e-07 30.4 0.3 0.009 16.6 0.0 2.6 2 0 0 2 2 2 2 ACT domain Put_Phosphatase PF06888.12 gi|330506331|ref|YP_004382759.1| - 5.8e-07 29.1 1.2 0.00013 21.5 0.1 2.8 3 0 0 3 3 3 2 Putative Phosphatase HAD_2 PF13419.6 gi|330506331|ref|YP_004382759.1| - 6.4e-07 29.6 2.8 1.5e-05 25.1 2.8 2.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|330506331|ref|YP_004382759.1| - 0.043 13.3 0.1 0.32 10.5 0.0 2.0 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase HicB_lk_antitox PF15919.5 gi|330506332|ref|YP_004382760.1| - 0.011 15.8 0.0 0.012 15.7 0.0 1.1 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system YHS PF04945.13 gi|330506333|ref|YP_004382761.1| - 8.6e-18 64.2 0.7 9.3e-18 64.1 0.7 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|330506333|ref|YP_004382761.1| - 0.0032 17.8 0.3 0.005 17.1 0.3 1.4 1 0 0 1 1 1 1 Archaeal TRASH domain ATPase-cat_bd PF12156.8 gi|330506333|ref|YP_004382761.1| - 0.012 16.3 0.1 0.014 16.1 0.1 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase E1-E2_ATPase PF00122.20 gi|330506334|ref|YP_004382762.1| - 3.5e-58 196.1 4.4 2.3e-57 193.4 1.5 2.5 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|330506334|ref|YP_004382762.1| - 3.5e-46 158.1 1.2 1.8e-45 155.8 2.1 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|330506334|ref|YP_004382762.1| - 1.4e-29 102.3 0.6 1.7e-14 54.0 0.0 2.6 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|330506334|ref|YP_004382762.1| - 2.2e-05 24.3 1.0 0.013 15.3 0.3 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase RRM_3 PF08777.11 gi|330506334|ref|YP_004382762.1| - 0.0056 16.7 0.1 0.49 10.5 0.0 2.5 2 0 0 2 2 2 1 RNA binding motif DUF443 PF04276.12 gi|330506334|ref|YP_004382762.1| - 0.14 11.9 0.1 0.14 11.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF443) FeThRed_B PF02943.15 gi|330506335|ref|YP_004382763.1| - 8e-25 86.9 0.1 1.2e-24 86.3 0.1 1.2 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain zf-C4H2 PF10146.9 gi|330506335|ref|YP_004382763.1| - 0.015 15.6 0.3 0.015 15.6 0.3 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein FHA PF00498.26 gi|330506335|ref|YP_004382763.1| - 0.032 14.6 0.0 0.057 13.8 0.0 1.4 1 0 0 1 1 1 0 FHA domain Glutaredoxin PF00462.24 gi|330506336|ref|YP_004382764.1| - 7.4e-11 42.1 0.0 1.1e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 gi|330506336|ref|YP_004382764.1| - 0.0019 18.6 0.0 0.0025 18.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.6 gi|330506336|ref|YP_004382764.1| - 0.013 15.9 0.1 0.031 14.7 0.1 1.6 1 1 0 1 1 1 0 Thioredoxin-like domain GST_N_2 PF13409.6 gi|330506336|ref|YP_004382764.1| - 0.034 14.5 0.0 0.038 14.3 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Nre_N PF04894.12 gi|330506338|ref|YP_004382766.1| - 1.2e-82 277.8 0.0 1.7e-82 277.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|330506338|ref|YP_004382766.1| - 1.3e-36 124.8 0.0 2.1e-36 124.2 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Nuc_deoxyrib_tr PF05014.15 gi|330506339|ref|YP_004382767.1| - 0.077 13.0 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Inos-1-P_synth PF01658.17 gi|330506340|ref|YP_004382768.1| - 9.4e-32 109.5 0.0 1.8e-31 108.6 0.0 1.5 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|330506340|ref|YP_004382768.1| - 0.044 13.2 0.0 0.072 12.5 0.0 1.3 1 0 0 1 1 1 0 Myo-inositol-1-phosphate synthase Cupin_2 PF07883.11 gi|330506341|ref|YP_004382769.1| - 4.7e-15 55.0 0.0 5.9e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|330506341|ref|YP_004382769.1| - 3.9e-06 26.8 0.1 4.9e-06 26.5 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|330506341|ref|YP_004382769.1| - 7.4e-05 22.4 0.0 0.0001 21.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|330506341|ref|YP_004382769.1| - 0.0011 18.6 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Cupin PCO_ADO PF07847.12 gi|330506341|ref|YP_004382769.1| - 0.0015 18.1 0.2 0.38 10.2 0.0 2.0 1 1 1 2 2 2 2 PCO_ADO CENP-C_C PF11699.8 gi|330506341|ref|YP_004382769.1| - 0.0019 18.3 0.0 0.0023 18.1 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like DMSP_lyase PF16867.5 gi|330506341|ref|YP_004382769.1| - 0.018 14.7 0.0 0.019 14.6 0.0 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Ectoine_synth PF06339.12 gi|330506341|ref|YP_004382769.1| - 0.084 13.1 0.0 0.1 12.8 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase Radical_SAM PF04055.21 gi|330506342|ref|YP_004382770.1| - 1.1e-08 35.6 0.0 2.2e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|330506342|ref|YP_004382770.1| - 2.9e-08 33.8 0.2 5.6e-07 29.7 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif Fer4_12 PF13353.6 gi|330506342|ref|YP_004382770.1| - 0.0052 17.1 0.1 0.0092 16.3 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain HHH_5 PF14520.6 gi|330506342|ref|YP_004382770.1| - 0.0054 17.3 0.0 0.021 15.4 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain Fer4_14 PF13394.6 gi|330506342|ref|YP_004382770.1| - 0.035 14.2 0.0 0.071 13.2 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain HHH PF00633.23 gi|330506342|ref|YP_004382770.1| - 0.12 12.3 0.0 0.43 10.5 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4130 PF13566.6 gi|330506343|ref|YP_004382771.1| - 5.9e-20 71.8 0.0 8.4e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 P_proprotein PF01483.20 gi|330506345|ref|YP_004382773.1| - 5.1e-34 116.1 0.0 1.1e-15 57.3 0.0 2.3 2 0 0 2 2 2 2 Proprotein convertase P-domain Peptidase_M6 PF05547.11 gi|330506345|ref|YP_004382773.1| - 0.00034 19.1 3.1 0.63 8.3 0.1 3.5 2 2 0 2 2 2 2 Immune inhibitor A peptidase M6 FKBP_C PF00254.28 gi|330506346|ref|YP_004382774.1| - 3.5e-24 84.9 0.1 4.6e-24 84.6 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Tudor_FRX1 PF18336.1 gi|330506346|ref|YP_004382774.1| - 0.036 14.0 0.0 0.072 13.0 0.0 1.6 1 0 0 1 1 1 0 Fragile X mental retardation Tudor domain Peptidase_M48 PF01435.18 gi|330506347|ref|YP_004382775.1| - 1.4e-39 135.9 0.0 1.4e-39 135.9 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|330506347|ref|YP_004382775.1| - 2e-07 30.5 0.5 2e-07 30.5 0.5 2.0 2 0 0 2 2 2 1 BlaR1 peptidase M56 DUF4157 PF13699.6 gi|330506347|ref|YP_004382775.1| - 0.024 14.8 0.1 0.045 14.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) SprT-like PF10263.9 gi|330506347|ref|YP_004382775.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF2268 PF10026.9 gi|330506347|ref|YP_004382775.1| - 0.16 11.5 0.1 0.24 10.9 0.1 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF373 PF04123.13 gi|330506347|ref|YP_004382775.1| - 4.4 6.6 8.8 18 4.7 8.8 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF373) DUF2721 PF11026.8 gi|330506347|ref|YP_004382775.1| - 8.9 6.2 10.5 10 6.0 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) TauE PF01925.19 gi|330506349|ref|YP_004382777.1| - 3.8e-48 164.2 41.9 4.7e-48 163.9 41.9 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Lactamase_B PF00753.27 gi|330506350|ref|YP_004382778.1| - 4.4e-12 46.4 0.1 7.3e-12 45.7 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|330506350|ref|YP_004382778.1| - 4.7e-05 23.0 0.0 8.2e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.25 gi|330506350|ref|YP_004382778.1| - 0.01 16.0 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin Flavodoxin_5 PF12724.7 gi|330506350|ref|YP_004382778.1| - 0.048 13.9 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin domain Rubredoxin PF00301.20 gi|330506351|ref|YP_004382779.1| - 8.2e-24 83.4 4.2 1.1e-23 83.0 4.2 1.2 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|330506351|ref|YP_004382779.1| - 0.00092 19.3 0.1 0.0014 18.7 0.1 1.3 1 0 0 1 1 1 1 PHD-finger Zn-ribbon_8 PF09723.10 gi|330506351|ref|YP_004382779.1| - 0.0098 16.0 2.8 0.055 13.6 2.8 2.0 1 1 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|330506351|ref|YP_004382779.1| - 0.012 15.1 0.3 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|330506351|ref|YP_004382779.1| - 0.019 14.9 2.5 2.4 8.1 0.1 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-Sec23_Sec24 PF04810.15 gi|330506351|ref|YP_004382779.1| - 0.023 14.8 0.3 8.1 6.6 0.0 2.5 3 0 0 3 3 3 0 Sec23/Sec24 zinc finger zf-H2C2_2 PF13465.6 gi|330506351|ref|YP_004382779.1| - 0.059 13.8 2.0 3.2 8.4 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-HIT PF04438.16 gi|330506351|ref|YP_004382779.1| - 0.085 12.7 3.3 5.3 7.0 1.2 2.2 2 0 0 2 2 2 0 HIT zinc finger Desulfoferrod_N PF06397.12 gi|330506351|ref|YP_004382779.1| - 0.096 12.3 1.3 0.17 11.5 0.4 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain HypA PF01155.19 gi|330506351|ref|YP_004382779.1| - 0.11 12.5 0.0 0.14 12.2 0.0 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37ae PF01780.19 gi|330506351|ref|YP_004382779.1| - 0.16 12.0 2.3 1.6 8.8 0.7 2.2 2 0 0 2 2 2 0 Ribosomal L37ae protein family zf-C2H2_4 PF13894.6 gi|330506351|ref|YP_004382779.1| - 0.2 12.6 2.6 8.6 7.5 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.6 gi|330506351|ref|YP_004382779.1| - 0.24 11.2 2.4 2.6 7.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.14 gi|330506351|ref|YP_004382779.1| - 0.32 11.0 1.8 4.4 7.4 0.4 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid UPF0547 PF10571.9 gi|330506351|ref|YP_004382779.1| - 0.56 10.3 4.9 8.3 6.6 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|330506351|ref|YP_004382779.1| - 0.63 9.7 0.1 0.63 9.7 0.1 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|330506351|ref|YP_004382779.1| - 2.4 8.0 7.4 3 7.6 1.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|330506351|ref|YP_004382779.1| - 8.6 5.9 7.5 0.54 9.7 0.9 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.18 gi|330506351|ref|YP_004382779.1| - 9.4 5.7 8.1 0.45 9.9 0.7 2.3 3 0 0 3 3 3 0 Zn-finger in Ran binding protein and others DUF853 PF05872.12 gi|330506353|ref|YP_004382781.1| - 9.2e-08 31.1 0.0 0.00021 20.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|330506353|ref|YP_004382781.1| - 5.7e-07 29.9 0.0 5.7e-07 29.9 0.0 3.4 3 2 0 3 3 3 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|330506353|ref|YP_004382781.1| - 4.8e-05 22.4 0.1 0.0049 15.8 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|330506353|ref|YP_004382781.1| - 0.00016 20.7 0.0 0.18 10.7 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|330506353|ref|YP_004382781.1| - 0.0098 15.3 0.0 0.065 12.6 0.1 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family KxDL PF10241.9 gi|330506353|ref|YP_004382781.1| - 3.3 8.0 6.8 22 5.4 0.5 2.7 2 1 0 2 2 2 0 Uncharacterized conserved protein DUF4407 PF14362.6 gi|330506353|ref|YP_004382781.1| - 7.1 5.9 7.7 12 5.2 7.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Spc24 PF08286.11 gi|330506353|ref|YP_004382781.1| - 8.7 6.6 10.5 5.7 7.2 1.9 2.4 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DDE_Tnp_1 PF01609.21 gi|330506354|ref|YP_004382782.1| - 1.6e-09 37.8 0.1 2.2e-09 37.3 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain AT_hook PF02178.19 gi|330506354|ref|YP_004382782.1| - 0.022 14.6 0.3 0.054 13.4 0.3 1.6 1 0 0 1 1 1 0 AT hook motif DDE_Tnp_1 PF01609.21 gi|330506355|ref|YP_004382783.1| - 1.9e-25 89.8 0.0 3.3e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|330506355|ref|YP_004382783.1| - 0.014 14.7 0.3 0.021 14.1 0.3 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|330506355|ref|YP_004382783.1| - 0.019 13.3 0.0 0.03 12.6 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 Tudor_FRX1 PF18336.1 gi|330506355|ref|YP_004382783.1| - 0.075 13.0 1.0 1.4 8.9 0.1 2.8 3 0 0 3 3 3 0 Fragile X mental retardation Tudor domain DUF4277 PF14104.6 gi|330506356|ref|YP_004382784.1| - 5.8e-42 142.5 0.0 1.5e-41 141.1 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4277) MRP-L47 PF06984.13 gi|330506357|ref|YP_004382785.1| - 0.013 15.6 0.3 0.015 15.4 0.3 1.1 1 0 0 1 1 1 0 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) CoA_binding_2 PF13380.6 gi|330506358|ref|YP_004382786.1| - 1.3e-05 25.7 0.0 5.4e-05 23.7 0.0 1.7 1 1 1 2 2 2 1 CoA binding domain DUF3039 PF11238.8 gi|330506361|ref|YP_004382789.1| - 0.039 13.7 0.4 0.045 13.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) Zn-ribbon_8 PF09723.10 gi|330506361|ref|YP_004382789.1| - 0.062 13.4 1.4 0.081 13.0 1.4 1.3 1 1 0 1 1 1 0 Zinc ribbon domain DUF983 PF06170.12 gi|330506361|ref|YP_004382789.1| - 0.19 12.1 0.2 0.24 11.9 0.2 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF983) Aldo_ket_red PF00248.21 gi|330506364|ref|YP_004382792.1| - 1.3e-15 57.3 0.0 4e-13 49.2 0.0 2.1 1 1 1 2 2 2 2 Aldo/keto reductase family PIN PF01850.21 gi|330506367|ref|YP_004382795.1| - 7.7e-05 23.2 0.0 9.6e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 PIN domain Oxidored_nitro PF00148.19 gi|330506368|ref|YP_004382796.1| - 1.6e-53 181.9 0.2 3e-53 181.0 0.2 1.4 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Gly_rich_SFCGS PF14272.6 gi|330506368|ref|YP_004382796.1| - 0.088 12.8 0.0 0.42 10.7 0.0 1.9 2 0 0 2 2 2 0 Glycine-rich SFCGS Abhydrolase_1 PF00561.20 gi|330506370|ref|YP_004382798.1| - 9.3e-23 81.2 0.0 1.7e-17 63.9 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|330506370|ref|YP_004382798.1| - 7.3e-15 54.9 0.0 1.2e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|330506370|ref|YP_004382798.1| - 1.8e-14 54.9 0.3 2.2e-14 54.6 0.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.20 gi|330506370|ref|YP_004382798.1| - 0.0027 17.4 0.0 0.0037 16.9 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Thioesterase PF00975.20 gi|330506370|ref|YP_004382798.1| - 0.0038 17.4 0.0 0.0071 16.5 0.0 1.4 1 0 0 1 1 1 1 Thioesterase domain Peptidase_S9 PF00326.21 gi|330506370|ref|YP_004382798.1| - 0.023 14.2 0.0 2.7 7.4 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 gi|330506370|ref|YP_004382798.1| - 0.076 12.9 0.0 0.23 11.3 0.0 1.9 1 1 0 1 1 1 0 alpha/beta hydrolase fold Ndr PF03096.14 gi|330506370|ref|YP_004382798.1| - 0.079 11.7 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 Ndr family DUF4222 PF13973.6 gi|330506372|ref|YP_004382800.1| - 0.19 11.4 0.1 0.79 9.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4222) Glyco_transf_36 PF06165.11 gi|330506374|ref|YP_004382802.1| - 5.3e-160 530.5 0.0 1.8e-79 266.7 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase family 36 Glyco_hydro_36 PF17167.4 gi|330506374|ref|YP_004382802.1| - 1.6e-116 389.5 0.0 2.3e-116 388.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase 36 superfamily, catalytic domain Glycoamylase PF10091.9 gi|330506374|ref|YP_004382802.1| - 4.7e-15 55.8 0.0 8.9e-15 54.8 0.0 1.5 1 0 0 1 1 1 1 Putative glucoamylase DUF772 PF05598.11 gi|330506374|ref|YP_004382802.1| - 0.081 13.0 0.0 0.28 11.2 0.0 2.0 1 0 0 1 1 1 0 Transposase domain (DUF772) DUF2025 PF09634.10 gi|330506374|ref|YP_004382802.1| - 0.17 11.9 0.1 2 8.5 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2025) Sm_multidrug_ex PF06695.11 gi|330506375|ref|YP_004382803.1| - 2.1e-36 125.2 4.0 2.8e-36 124.8 4.0 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein CitG PF01874.16 gi|330506378|ref|YP_004382806.1| - 2e-67 227.8 0.1 2.3e-67 227.6 0.1 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|330506379|ref|YP_004382807.1| - 3.7e-49 166.9 0.0 4.2e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Rad51 PF08423.11 gi|330506380|ref|YP_004382808.1| - 4.4e-31 108.1 0.0 5.2e-31 107.8 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|330506380|ref|YP_004382808.1| - 4.8e-09 36.1 0.1 5.8e-09 35.8 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|330506380|ref|YP_004382808.1| - 6e-09 35.6 1.9 4.5e-07 29.5 1.9 2.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|330506380|ref|YP_004382808.1| - 4.3e-08 33.0 0.1 8.9e-08 31.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|330506380|ref|YP_004382808.1| - 8.3e-06 25.7 0.0 1.2e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zot PF05707.12 gi|330506380|ref|YP_004382808.1| - 1.4e-05 24.8 0.0 1.9e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) CbiA PF01656.23 gi|330506380|ref|YP_004382808.1| - 0.00013 22.1 0.0 0.00016 21.7 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain TrwB_AAD_bind PF10412.9 gi|330506380|ref|YP_004382808.1| - 0.00022 20.3 0.1 0.00047 19.2 0.0 1.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.17 gi|330506380|ref|YP_004382808.1| - 0.00089 19.0 0.0 0.0018 18.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|330506380|ref|YP_004382808.1| - 0.0025 18.2 0.2 0.0048 17.3 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|330506380|ref|YP_004382808.1| - 0.007 16.8 0.0 0.012 16.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CobU PF02283.16 gi|330506380|ref|YP_004382808.1| - 0.015 14.9 0.1 0.09 12.3 0.1 2.0 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase DUF87 PF01935.17 gi|330506380|ref|YP_004382808.1| - 0.039 14.1 0.0 0.064 13.3 0.0 1.4 1 1 0 1 1 1 0 Helicase HerA, central domain MipZ PF09140.11 gi|330506380|ref|YP_004382808.1| - 0.039 13.2 0.0 0.064 12.5 0.0 1.4 1 1 0 1 1 1 0 ATPase MipZ Cytidylate_kin PF02224.18 gi|330506380|ref|YP_004382808.1| - 0.043 13.5 0.4 1 9.1 0.1 2.1 1 1 1 2 2 2 0 Cytidylate kinase DUF815 PF05673.13 gi|330506380|ref|YP_004382808.1| - 0.045 12.9 0.0 0.093 11.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Isochorismatase PF00857.20 gi|330506380|ref|YP_004382808.1| - 0.048 13.8 0.0 1.4 9.1 0.0 2.1 2 0 0 2 2 2 0 Isochorismatase family AAA_22 PF13401.6 gi|330506380|ref|YP_004382808.1| - 0.049 13.9 0.1 0.15 12.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|330506380|ref|YP_004382808.1| - 0.051 13.3 0.1 0.077 12.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|330506380|ref|YP_004382808.1| - 0.057 13.3 0.0 0.08 12.8 0.0 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|330506380|ref|YP_004382808.1| - 0.068 12.8 0.0 0.091 12.4 0.0 1.3 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain DAP3 PF10236.9 gi|330506380|ref|YP_004382808.1| - 0.07 12.3 0.1 0.19 10.9 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_29 PF13555.6 gi|330506380|ref|YP_004382808.1| - 0.097 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Acetyltransf_1 PF00583.25 gi|330506381|ref|YP_004382809.1| - 8.4e-15 55.0 0.1 1.1e-14 54.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|330506381|ref|YP_004382809.1| - 6.3e-11 42.3 0.0 7.2e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|330506381|ref|YP_004382809.1| - 4.3e-10 39.9 0.1 6.5e-10 39.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330506381|ref|YP_004382809.1| - 4.6e-08 32.9 0.0 6.7e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|330506381|ref|YP_004382809.1| - 0.00021 21.3 0.0 0.0077 16.3 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|330506381|ref|YP_004382809.1| - 0.0036 18.0 0.1 0.0076 16.9 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|330506381|ref|YP_004382809.1| - 0.014 15.5 0.0 0.032 14.4 0.0 1.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|330506381|ref|YP_004382809.1| - 0.036 14.2 0.0 0.067 13.3 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase YhcG_C PF06250.11 gi|330506383|ref|YP_004382811.1| - 8.3e-60 201.1 0.0 1.2e-59 200.6 0.0 1.2 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DUF1016_N PF17761.1 gi|330506383|ref|YP_004382811.1| - 6.9e-48 162.3 0.5 1.8e-46 157.7 0.4 2.1 2 0 0 2 2 2 1 DUF1016 N-terminal domain Methylase_S PF01420.19 gi|330506384|ref|YP_004382812.1| - 1.2e-41 142.7 0.1 8.9e-24 84.6 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain SIR2_2 PF13289.6 gi|330506385|ref|YP_004382813.1| - 1.3e-14 54.5 0.0 2.3e-13 50.5 0.0 2.2 2 0 0 2 2 2 1 SIR2-like domain DUF87 PF01935.17 gi|330506386|ref|YP_004382814.1| - 2.5e-22 80.1 0.0 4.1e-22 79.4 0.0 1.4 1 1 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|330506386|ref|YP_004382814.1| - 5.1e-08 32.2 0.1 0.00016 20.8 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|330506386|ref|YP_004382814.1| - 5.4e-07 28.6 0.1 0.0007 18.3 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ResIII PF04851.15 gi|330506386|ref|YP_004382814.1| - 3.1e-05 24.1 0.1 0.095 12.7 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_10 PF12846.7 gi|330506386|ref|YP_004382814.1| - 3.1e-05 23.1 0.0 0.015 14.2 0.0 2.7 2 1 1 3 3 3 2 AAA-like domain AAA_22 PF13401.6 gi|330506386|ref|YP_004382814.1| - 0.00015 22.0 0.3 0.22 11.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain Zot PF05707.12 gi|330506386|ref|YP_004382814.1| - 0.0059 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DEAD PF00270.29 gi|330506386|ref|YP_004382814.1| - 0.027 14.3 0.0 0.98 9.2 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|330506386|ref|YP_004382814.1| - 0.11 13.1 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter DUF262 PF03235.14 gi|330506387|ref|YP_004382815.1| - 1.9e-31 110.0 0.1 4e-31 108.9 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF262 DUF1524 PF07510.11 gi|330506387|ref|YP_004382815.1| - 1.2e-26 93.2 0.1 2.3e-26 92.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) Phage_sheath_1C PF17482.2 gi|330506387|ref|YP_004382815.1| - 0.18 11.8 0.0 0.55 10.2 0.0 1.8 1 0 0 1 1 1 0 Phage tail sheath C-terminal domain SWI2_SNF2 PF18766.1 gi|330506388|ref|YP_004382816.1| - 6.7e-70 235.2 1.8 2.3e-69 233.5 0.0 2.4 2 0 0 2 2 2 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|330506388|ref|YP_004382816.1| - 8.2e-29 100.9 1.5 1.8e-28 99.9 0.1 2.3 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF3387 PF11867.8 gi|330506388|ref|YP_004382816.1| - 1.3e-23 83.9 9.2 1.3e-23 83.9 9.2 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3387) ResIII PF04851.15 gi|330506388|ref|YP_004382816.1| - 9.7e-17 61.5 1.4 2.2e-16 60.3 0.0 2.4 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit UPF0061 PF02696.14 gi|330506388|ref|YP_004382816.1| - 0.65 8.7 4.4 0.35 9.6 2.0 1.7 2 0 0 2 2 2 0 Uncharacterized ACR, YdiU/UPF0061 family CPSase_L_D2 PF02786.17 gi|330506389|ref|YP_004382817.1| - 2.4e-95 318.0 1.6 3.8e-58 196.4 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|330506389|ref|YP_004382817.1| - 3.2e-26 92.1 0.1 2.2e-25 89.4 0.0 2.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|330506389|ref|YP_004382817.1| - 2.5e-24 85.3 0.1 3.6e-23 81.6 0.1 3.0 3 0 0 3 3 3 1 MGS-like domain ATP-grasp PF02222.22 gi|330506389|ref|YP_004382817.1| - 2.9e-24 85.5 0.2 3e-11 43.2 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|330506389|ref|YP_004382817.1| - 8.6e-16 58.1 0.3 7.9e-08 32.1 0.1 2.6 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|330506389|ref|YP_004382817.1| - 7.5e-13 48.4 0.0 7.1e-06 25.8 0.1 2.4 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|330506389|ref|YP_004382817.1| - 6.6e-09 36.0 0.1 0.0006 19.9 0.1 2.5 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|330506389|ref|YP_004382817.1| - 3.4e-08 33.5 0.3 0.012 15.4 0.0 3.0 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|330506389|ref|YP_004382817.1| - 1.1e-05 25.1 0.0 0.12 11.8 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|330506389|ref|YP_004382817.1| - 1.8e-05 24.4 0.0 0.026 14.1 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain DUF4176 PF13780.6 gi|330506389|ref|YP_004382817.1| - 0.024 14.7 0.0 2.7 8.1 0.0 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4176) QSregVF_b PF12843.7 gi|330506389|ref|YP_004382817.1| - 0.068 13.1 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Putative quorum-sensing-regulated virulence factor DDE_Tnp_2 PF04693.12 gi|330506390|ref|YP_004382818.1| - 1.5e-05 24.4 0.7 2e-05 24.0 0.7 1.1 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1 PF01609.21 gi|330506390|ref|YP_004382818.1| - 4.2e-05 23.3 0.1 5.1e-05 23.0 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain rve PF00665.26 gi|330506391|ref|YP_004382819.1| - 1.4e-25 89.8 0.0 2.2e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 gi|330506391|ref|YP_004382819.1| - 2.7e-19 69.1 0.3 1.9e-18 66.3 0.3 2.1 2 0 0 2 2 2 1 HTH-like domain rve_3 PF13683.6 gi|330506391|ref|YP_004382819.1| - 3.8e-16 58.6 0.1 9.1e-16 57.4 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|330506391|ref|YP_004382819.1| - 4.7e-08 33.1 3.6 9.4e-08 32.1 2.4 2.1 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 gi|330506391|ref|YP_004382819.1| - 0.00016 21.9 0.3 0.00028 21.1 0.3 1.4 1 0 0 1 1 1 1 DDE domain GP3_package PF16677.5 gi|330506391|ref|YP_004382819.1| - 0.027 14.6 0.1 12 6.1 0.0 2.4 2 0 0 2 2 2 0 DNA-packaging protein gp3 HTH_Tnp_Tc3_2 PF01498.18 gi|330506391|ref|YP_004382819.1| - 0.041 14.1 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_Tnp_1_2 PF13022.6 gi|330506391|ref|YP_004382819.1| - 0.049 13.8 0.1 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_Tnp_1 PF01527.20 gi|330506392|ref|YP_004382820.1| - 4.3e-10 39.8 0.1 6.4e-10 39.2 0.1 1.5 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.6 gi|330506392|ref|YP_004382820.1| - 0.0043 16.8 0.0 0.0089 15.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|330506392|ref|YP_004382820.1| - 0.005 16.9 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PKcGMP_CC PF16808.5 gi|330506392|ref|YP_004382820.1| - 0.033 14.0 0.3 0.074 12.9 0.3 1.6 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4733 PF15878.5 gi|330506392|ref|YP_004382820.1| - 0.058 13.9 0.1 0.12 12.8 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4733) DDE_5 PF13546.6 gi|330506393|ref|YP_004382821.1| - 2.6e-14 53.3 0.0 4.1e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_2 PF04693.12 gi|330506393|ref|YP_004382821.1| - 9.1e-07 28.4 0.3 4.4e-05 22.9 0.1 2.1 1 1 0 2 2 2 2 Archaeal putative transposase ISC1217 Lar_N PF09861.9 gi|330506394|ref|YP_004382822.1| - 1.3e-44 151.8 0.0 1.9e-44 151.3 0.0 1.2 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF58 PF01882.18 gi|330506395|ref|YP_004382823.1| - 9.5e-15 54.7 0.0 2e-14 53.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|330506396|ref|YP_004382824.1| - 2e-62 208.9 0.0 3.6e-62 208.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|330506396|ref|YP_004382824.1| - 3.8e-18 65.1 0.0 7.8e-18 64.1 0.0 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|330506396|ref|YP_004382824.1| - 2.2e-11 43.9 0.0 3.6e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|330506396|ref|YP_004382824.1| - 1.7e-05 24.0 0.0 4.8e-05 22.6 0.0 1.8 2 1 0 2 2 2 1 MCM P-loop domain AAA PF00004.29 gi|330506396|ref|YP_004382824.1| - 0.001 19.5 0.0 0.0025 18.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|330506396|ref|YP_004382824.1| - 0.0021 17.5 0.1 0.22 10.9 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|330506396|ref|YP_004382824.1| - 0.0062 16.3 0.0 0.096 12.4 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|330506396|ref|YP_004382824.1| - 0.016 14.9 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Spore_YtfJ PF09579.10 gi|330506397|ref|YP_004382825.1| - 2e-11 43.9 4.3 2.6e-11 43.5 4.3 1.2 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) DUF2953 PF11167.8 gi|330506398|ref|YP_004382826.1| - 8.6e-08 32.2 0.0 1.6e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) DUF1772 PF08592.11 gi|330506398|ref|YP_004382826.1| - 0.078 13.3 0.0 0.2 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) TRH PF05438.12 gi|330506398|ref|YP_004382826.1| - 0.12 12.1 0.9 0.21 11.3 0.9 1.3 1 0 0 1 1 1 0 Thyrotropin-releasing hormone (TRH) Phosphorylase PF00343.20 gi|330506399|ref|YP_004382827.1| - 3.3e-28 98.4 0.0 4.9e-20 71.4 0.0 3.2 2 1 0 2 2 2 2 Carbohydrate phosphorylase DUF3417 PF11897.8 gi|330506399|ref|YP_004382827.1| - 4.6e-24 85.0 0.3 1.3e-23 83.6 0.3 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF3417) Capsule_synth PF05159.14 gi|330506399|ref|YP_004382827.1| - 0.037 13.5 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 Capsule polysaccharide biosynthesis protein HicB_lk_antitox PF15919.5 gi|330506400|ref|YP_004382828.1| - 9.9e-05 22.4 0.0 0.00012 22.2 0.0 1.2 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Jag_N PF14804.6 gi|330506400|ref|YP_004382828.1| - 0.2 12.1 0.1 12 6.3 0.0 2.3 2 0 0 2 2 2 0 Jag N-terminus PIN PF01850.21 gi|330506402|ref|YP_004382830.1| - 0.00012 22.5 1.1 0.00018 22.0 1.1 1.4 1 1 0 1 1 1 1 PIN domain DUF2188 PF09954.9 gi|330506405|ref|YP_004382833.1| - 8e-11 41.9 0.1 9.6e-11 41.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2188) SWIM PF04434.17 gi|330506406|ref|YP_004382834.1| - 4e-07 29.6 0.2 7.7e-07 28.7 0.2 1.5 1 0 0 1 1 1 1 SWIM zinc finger SNF2_N PF00176.23 gi|330506407|ref|YP_004382835.1| - 4.7e-63 213.0 0.0 8.1e-63 212.3 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3670 PF12419.8 gi|330506407|ref|YP_004382835.1| - 2.4e-39 134.3 0.1 4.8e-39 133.3 0.1 1.6 1 0 0 1 1 1 1 SNF2 Helicase protein Helicase_C PF00271.31 gi|330506407|ref|YP_004382835.1| - 1.9e-18 66.8 0.0 4.1e-18 65.7 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|330506407|ref|YP_004382835.1| - 0.00042 20.1 0.0 0.00094 19.0 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|330506407|ref|YP_004382835.1| - 0.0021 18.1 0.0 0.0036 17.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Sulf_transp PF04143.14 gi|330506408|ref|YP_004382836.1| - 4.6e-16 59.3 13.6 4.6e-16 59.3 13.6 1.3 1 1 0 1 1 1 1 Sulphur transport Sulf_transp PF04143.14 gi|330506409|ref|YP_004382837.1| - 7.2e-25 88.2 12.2 7.2e-25 88.2 12.2 1.5 1 1 1 2 2 2 1 Sulphur transport Rhodanese PF00581.20 gi|330506410|ref|YP_004382838.1| - 7.1e-20 71.5 0.0 4e-10 40.2 0.0 2.5 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|330506410|ref|YP_004382838.1| - 6.4e-11 42.6 0.7 2.1e-10 41.0 0.7 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|330506410|ref|YP_004382838.1| - 0.053 13.0 0.3 0.15 11.5 0.3 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain CitMHS PF03600.16 gi|330506411|ref|YP_004382839.1| - 7.3e-51 173.1 16.3 1.4e-50 172.2 16.3 1.4 1 1 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 gi|330506411|ref|YP_004382839.1| - 1.9e-13 50.0 0.0 5.3e-06 26.2 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 gi|330506411|ref|YP_004382839.1| - 1.6e-12 47.2 40.9 4.4e-08 32.6 14.2 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region AcetylCoA_hyd_C PF13336.6 gi|330506413|ref|YP_004382841.1| - 1.4e-57 193.9 0.0 2.4e-57 193.2 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 gi|330506413|ref|YP_004382841.1| - 1.5e-38 132.7 0.0 3.7e-38 131.5 0.0 1.6 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.25 gi|330506413|ref|YP_004382841.1| - 1.4e-06 28.5 0.0 3.3e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family CoA_trans PF01144.23 gi|330506413|ref|YP_004382841.1| - 5.5e-06 25.9 0.0 0.013 14.9 0.0 2.5 2 0 0 2 2 2 2 Coenzyme A transferase Acetyltransf_3 PF13302.7 gi|330506413|ref|YP_004382841.1| - 1.6e-05 25.6 0.0 3e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|330506413|ref|YP_004382841.1| - 2.8e-05 24.3 0.0 5.1e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|330506413|ref|YP_004382841.1| - 8.3e-05 22.9 0.1 0.00021 21.7 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330506413|ref|YP_004382841.1| - 0.00031 20.6 0.0 0.0008 19.3 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|330506413|ref|YP_004382841.1| - 0.00034 20.5 0.0 0.0022 18.0 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Mal_decarbox_Al PF16957.5 gi|330506413|ref|YP_004382841.1| - 0.0035 15.8 0.1 1.4 7.2 0.0 2.2 2 0 0 2 2 2 2 Malonate decarboxylase, alpha subunit, transporter DeoRC PF00455.22 gi|330506413|ref|YP_004382841.1| - 0.012 15.5 0.0 0.035 14.1 0.0 1.7 2 0 0 2 2 2 0 DeoR C terminal sensor domain OrfB_Zn_ribbon PF07282.11 gi|330506414|ref|YP_004382842.1| - 6.4e-22 77.3 0.0 1.6e-21 76.0 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|330506414|ref|YP_004382842.1| - 1.7e-19 69.0 2.2 3.6e-19 68.0 2.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_IS605 PF01385.19 gi|330506414|ref|YP_004382842.1| - 5e-17 62.2 0.0 1.2e-16 61.0 0.0 1.7 1 0 0 1 1 1 1 Probable transposase DZR PF12773.7 gi|330506414|ref|YP_004382842.1| - 0.007 16.4 0.2 0.012 15.6 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.15 gi|330506414|ref|YP_004382842.1| - 0.2 11.2 3.0 6.4 6.4 0.1 3.1 2 1 1 3 3 3 0 RecR protein zf-ribbon_3 PF13248.6 gi|330506414|ref|YP_004382842.1| - 0.76 9.3 3.1 4.5 6.8 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain RsmJ PF04378.13 gi|330506415|ref|YP_004382843.1| - 1.7e-13 50.4 0.0 2.1e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA large subunit methyltransferase D, RlmJ FeoB_N PF02421.18 gi|330506417|ref|YP_004382845.1| - 1.6e-49 167.4 0.8 2.3e-49 166.9 0.8 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|330506417|ref|YP_004382845.1| - 3.9e-24 85.1 17.4 5e-13 49.3 5.3 2.5 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|330506417|ref|YP_004382845.1| - 1.5e-16 60.5 0.1 2.3e-16 59.9 0.1 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|330506417|ref|YP_004382845.1| - 1.1e-12 47.4 1.0 1.1e-12 47.4 1.0 2.5 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus SRPRB PF09439.10 gi|330506417|ref|YP_004382845.1| - 0.00036 20.0 0.0 0.00054 19.4 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Gtr1_RagA PF04670.12 gi|330506417|ref|YP_004382845.1| - 0.016 14.5 0.0 0.05 12.9 0.0 1.8 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Roc PF08477.13 gi|330506417|ref|YP_004382845.1| - 0.035 14.3 0.1 0.37 11.0 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AIG1 PF04548.16 gi|330506417|ref|YP_004382845.1| - 0.2 11.0 0.1 0.29 10.4 0.1 1.2 1 0 0 1 1 1 0 AIG1 family Transmemb_17 PF09799.9 gi|330506418|ref|YP_004382846.1| - 0.0022 18.5 2.2 0.0031 18.1 0.5 1.9 1 1 1 2 2 2 1 Predicted membrane protein PPC PF04151.15 gi|330506418|ref|YP_004382846.1| - 0.26 12.4 0.6 2.7 9.1 0.6 2.3 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain DUF2157 PF09925.9 gi|330506418|ref|YP_004382846.1| - 4.5 7.0 10.9 0.62 9.8 5.8 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) Fasciclin PF02469.22 gi|330506419|ref|YP_004382847.1| - 2.3e-41 141.0 0.0 4.1e-22 78.8 0.0 2.1 2 0 0 2 2 2 2 Fasciclin domain Zap1_zf2 PF18217.1 gi|330506421|ref|YP_004382849.1| - 0.27 11.2 0.4 0.27 11.2 0.4 2.0 2 0 0 2 2 2 0 Zap1 zinc finger 2 Fer4_14 PF13394.6 gi|330506424|ref|YP_004382852.1| - 1.4e-11 44.5 1.7 1.9e-10 40.9 1.3 2.6 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|330506424|ref|YP_004382852.1| - 1.3e-08 35.2 1.4 3.8e-08 33.7 1.0 1.9 2 1 0 2 2 2 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|330506424|ref|YP_004382852.1| - 2.1e-08 34.7 0.2 3.4e-08 34.0 0.2 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Cyclophil_like PF04126.13 gi|330506425|ref|YP_004382853.1| - 3.6e-31 107.5 0.0 4e-31 107.3 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like Cyclophil_like2 PF18050.1 gi|330506425|ref|YP_004382853.1| - 3.2e-10 40.0 0.0 3.4e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin-like family DUF3830 PF12903.7 gi|330506425|ref|YP_004382853.1| - 0.0013 18.4 0.0 0.0022 17.7 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3830) Gln-synt_C PF00120.24 gi|330506426|ref|YP_004382854.1| - 1.7e-132 441.6 0.0 2.1e-132 441.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|330506426|ref|YP_004382854.1| - 2.3e-30 104.1 0.0 5.1e-30 103.0 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|330506426|ref|YP_004382854.1| - 0.00092 19.0 0.0 0.0054 16.6 0.0 2.1 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain GATase_2 PF00310.21 gi|330506427|ref|YP_004382855.1| - 1.3e-16 60.3 0.0 1.8e-14 53.3 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|330506427|ref|YP_004382855.1| - 7.6e-08 32.6 0.1 5.4e-07 29.9 0.0 2.3 2 1 1 3 3 3 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|330506427|ref|YP_004382855.1| - 2.3e-05 24.3 0.0 0.027 14.4 0.0 2.6 2 0 0 2 2 2 2 Glutamine amidotransferase domain Glu_synthase PF01645.17 gi|330506428|ref|YP_004382856.1| - 1.2e-140 468.8 0.1 1.9e-140 468.2 0.1 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|330506428|ref|YP_004382856.1| - 6e-15 55.5 0.1 4.1e-07 29.8 0.1 2.3 2 0 0 2 2 2 2 Glutamate synthase central domain IMPDH PF00478.25 gi|330506428|ref|YP_004382856.1| - 6.5e-09 35.2 7.8 4.1e-07 29.3 5.0 2.3 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|330506428|ref|YP_004382856.1| - 2.9e-07 29.9 7.6 5.8e-07 28.9 3.2 2.8 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Fer4_9 PF13187.6 gi|330506428|ref|YP_004382856.1| - 1.8e-06 28.0 10.4 1.8e-06 28.0 10.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330506428|ref|YP_004382856.1| - 1.5e-05 25.0 14.8 0.00038 20.5 0.6 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330506428|ref|YP_004382856.1| - 1.8e-05 24.3 2.8 1.8e-05 24.3 2.8 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain NMO PF03060.15 gi|330506428|ref|YP_004382856.1| - 0.00014 21.4 2.8 0.00032 20.2 2.8 1.5 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_16 PF13484.6 gi|330506428|ref|YP_004382856.1| - 0.00017 22.5 0.5 0.00017 22.5 0.5 3.3 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|330506428|ref|YP_004382856.1| - 0.00036 20.6 8.8 0.00036 20.6 8.8 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330506428|ref|YP_004382856.1| - 0.0022 18.5 22.9 0.0045 17.6 11.8 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330506428|ref|YP_004382856.1| - 0.012 16.1 2.3 0.012 16.1 2.3 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain DHO_dh PF01180.21 gi|330506428|ref|YP_004382856.1| - 0.043 13.0 4.1 0.16 11.2 3.4 2.2 2 1 0 2 2 2 0 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|330506428|ref|YP_004382856.1| - 0.061 12.8 0.3 0.14 11.6 0.3 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein Fer4_6 PF12837.7 gi|330506428|ref|YP_004382856.1| - 0.22 11.6 24.9 0.039 14.0 4.4 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330506428|ref|YP_004382856.1| - 1.9 9.0 19.0 4 8.0 2.9 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain GXGXG PF01493.19 gi|330506429|ref|YP_004382857.1| - 1.3e-34 119.5 3.6 1.7e-34 119.1 3.6 1.1 1 0 0 1 1 1 1 GXGXG motif Fer4_6 PF12837.7 gi|330506430|ref|YP_004382858.1| - 1.3e-12 47.1 36.6 2.9e-06 27.1 1.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.27 gi|330506430|ref|YP_004382858.1| - 2.5e-12 46.0 35.1 8.6e-08 31.7 1.5 5.7 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330506430|ref|YP_004382858.1| - 1.3e-10 41.6 31.1 2.3e-05 24.9 14.2 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330506430|ref|YP_004382858.1| - 2.3e-08 33.6 36.5 3.3e-06 26.8 1.6 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_11 PF13247.6 gi|330506430|ref|YP_004382858.1| - 4.8e-08 33.0 16.4 4.8e-08 33.0 16.4 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330506430|ref|YP_004382858.1| - 1.4e-07 31.5 30.2 0.0037 17.4 11.0 3.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330506430|ref|YP_004382858.1| - 0.00017 22.4 32.2 0.029 15.3 2.0 4.6 2 1 3 5 5 5 3 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|330506430|ref|YP_004382858.1| - 0.00046 20.3 35.6 0.0019 18.3 12.1 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330506430|ref|YP_004382858.1| - 0.00057 20.6 15.3 0.069 13.9 0.6 3.2 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|330506430|ref|YP_004382858.1| - 0.00057 20.2 39.4 0.0032 17.8 2.5 4.6 4 2 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330506430|ref|YP_004382858.1| - 0.0033 17.5 35.0 0.0056 16.8 12.7 3.5 1 1 2 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330506430|ref|YP_004382858.1| - 0.0064 17.0 1.0 0.0064 17.0 1.0 4.2 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330506430|ref|YP_004382858.1| - 0.013 16.4 47.2 0.015 16.2 5.1 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|330506430|ref|YP_004382858.1| - 0.1 13.4 1.4 0.1 13.4 1.4 3.9 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330506430|ref|YP_004382858.1| - 0.17 12.4 36.2 1.3 9.5 11.6 4.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330506430|ref|YP_004382858.1| - 0.19 12.3 1.0 0.19 12.3 1.0 3.6 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_10 PF13237.6 gi|330506431|ref|YP_004382859.1| - 9.3e-08 32.1 19.6 1.4e-05 25.1 10.9 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330506431|ref|YP_004382859.1| - 4.7e-07 30.3 30.6 0.00013 22.5 10.8 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330506431|ref|YP_004382859.1| - 2.7e-06 27.5 9.2 2.7e-06 27.5 9.2 2.5 2 1 2 4 4 4 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330506431|ref|YP_004382859.1| - 1.1e-05 25.0 2.6 1.1e-05 25.0 2.6 3.4 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330506431|ref|YP_004382859.1| - 4.5e-05 24.3 11.7 0.034 15.1 3.6 2.8 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|330506431|ref|YP_004382859.1| - 6.7e-05 22.9 10.3 6.7e-05 22.9 10.3 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330506431|ref|YP_004382859.1| - 8.4e-05 22.4 2.0 8.4e-05 22.4 2.0 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330506431|ref|YP_004382859.1| - 0.00034 20.6 1.9 0.00034 20.6 1.9 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330506431|ref|YP_004382859.1| - 0.032 14.7 8.3 0.13 12.8 1.2 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|330506431|ref|YP_004382859.1| - 0.34 11.5 12.3 0.23 12.0 1.5 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|330506431|ref|YP_004382859.1| - 2.9 8.5 19.3 4.5 7.9 4.0 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain GHMP_kinases_N PF00288.26 gi|330506432|ref|YP_004382860.1| - 4.3e-05 23.7 0.0 7.6e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF2148 PF09918.9 gi|330506433|ref|YP_004382861.1| - 0.00014 21.8 0.0 0.00022 21.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) ANTAR PF03861.14 gi|330506435|ref|YP_004382863.1| - 0.0076 16.1 0.2 0.011 15.6 0.2 1.2 1 0 0 1 1 1 1 ANTAR domain EF1_GNE PF00736.19 gi|330506436|ref|YP_004382864.1| - 1e-19 70.5 0.3 1.1e-19 70.4 0.3 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.26 gi|330506436|ref|YP_004382864.1| - 0.0038 17.7 0.2 0.19 12.2 0.0 2.2 2 0 0 2 2 2 1 Heavy-metal-associated domain FeS_assembly_P PF01883.19 gi|330506436|ref|YP_004382864.1| - 0.0096 16.1 0.6 0.039 14.1 0.1 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein P2 PF07194.11 gi|330506436|ref|YP_004382864.1| - 0.033 14.2 0.2 0.071 13.2 0.2 1.6 1 1 0 1 1 1 0 P2 response regulator binding domain Ribosomal_L4 PF00573.22 gi|330506436|ref|YP_004382864.1| - 0.061 13.0 0.0 0.062 13.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L4/L1 family TINF2_N PF14973.6 gi|330506436|ref|YP_004382864.1| - 0.087 13.2 0.0 0.094 13.1 0.0 1.1 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus POTRA_1 PF08478.10 gi|330506436|ref|YP_004382864.1| - 0.11 12.9 0.0 0.33 11.3 0.0 1.7 2 0 0 2 2 2 0 POTRA domain, FtsQ-type DUF1610 PF07754.11 gi|330506437|ref|YP_004382865.1| - 5e-06 26.4 4.1 5e-06 26.4 4.1 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF1610) HscB_4_cys PF18256.1 gi|330506437|ref|YP_004382865.1| - 0.015 15.1 2.0 0.015 15.1 2.0 2.3 2 1 1 3 3 2 0 Co-chaperone HscB tetracysteine metal binding motif OrfB_Zn_ribbon PF07282.11 gi|330506437|ref|YP_004382865.1| - 0.029 14.3 8.5 0.096 12.6 0.3 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|330506437|ref|YP_004382865.1| - 0.035 14.1 6.6 0.053 13.5 6.6 1.3 1 0 0 1 1 1 0 zinc-ribbons C1_2 PF03107.16 gi|330506437|ref|YP_004382865.1| - 0.038 14.3 9.7 3.1 8.2 7.9 2.1 1 1 1 2 2 2 0 C1 domain zf-CHY PF05495.12 gi|330506437|ref|YP_004382865.1| - 0.064 13.8 10.4 0.055 14.0 6.5 2.0 1 1 1 2 2 2 0 CHY zinc finger FYVE_2 PF02318.16 gi|330506437|ref|YP_004382865.1| - 0.077 13.2 5.8 0.092 13.0 5.8 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger Rhodanese_C PF12368.8 gi|330506437|ref|YP_004382865.1| - 0.1 13.0 7.5 0.12 12.7 7.5 1.2 1 0 0 1 1 1 0 Rhodanase C-terminal C1_1 PF00130.22 gi|330506437|ref|YP_004382865.1| - 0.11 12.4 9.8 70 3.4 9.8 2.2 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.6 gi|330506437|ref|YP_004382865.1| - 0.26 10.8 0.3 0.26 10.8 0.3 3.4 2 1 1 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|330506437|ref|YP_004382865.1| - 0.27 11.2 11.7 0.87 9.6 0.1 3.8 4 0 0 4 4 4 0 Nudix N-terminal Rubredoxin_2 PF18073.1 gi|330506437|ref|YP_004382865.1| - 0.34 10.7 0.3 0.34 10.7 0.3 3.9 4 0 0 4 4 4 0 Rubredoxin metal binding domain HypA PF01155.19 gi|330506437|ref|YP_004382865.1| - 0.36 10.9 10.4 1.3 9.1 0.2 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS91 PF14319.6 gi|330506437|ref|YP_004382865.1| - 0.42 10.7 9.0 0.9 9.6 9.0 1.6 1 1 0 1 1 1 0 Transposase zinc-binding domain Fer4 PF00037.27 gi|330506437|ref|YP_004382865.1| - 0.47 10.3 0.3 0.47 10.3 0.3 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain DUF2752 PF10825.8 gi|330506437|ref|YP_004382865.1| - 0.72 10.0 8.2 1.8 8.7 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) zf-ACC PF17848.1 gi|330506437|ref|YP_004382865.1| - 0.8 9.8 0.1 0.8 9.8 0.1 4.0 2 1 1 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf-C2HC5 PF06221.13 gi|330506437|ref|YP_004382865.1| - 0.84 9.7 11.9 0.27 11.3 5.5 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type NMDAR2_C PF10565.9 gi|330506437|ref|YP_004382865.1| - 0.97 8.2 4.2 1 8.2 4.2 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus zf-Mss51 PF13824.6 gi|330506437|ref|YP_004382865.1| - 1.4 9.1 13.3 6.5 6.9 2.4 2.9 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 PolC_DP2 PF03833.13 gi|330506437|ref|YP_004382865.1| - 1.4 6.6 6.5 1.5 6.6 6.5 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zn-ribbon_14 PF16503.5 gi|330506437|ref|YP_004382865.1| - 1.9 8.1 15.9 0.085 12.4 5.7 2.7 3 0 0 3 3 3 0 Zinc-ribbon zinc_ribbon_4 PF13717.6 gi|330506437|ref|YP_004382865.1| - 2.5 8.1 16.5 7.2 6.6 1.1 3.9 2 1 2 4 4 4 0 zinc-ribbon domain zf-UBP PF02148.19 gi|330506437|ref|YP_004382865.1| - 2.7 8.4 9.9 0.35 11.2 3.1 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-H2C2_2 PF13465.6 gi|330506437|ref|YP_004382865.1| - 5.6 7.6 12.6 8.7 7.0 0.6 3.6 3 1 1 4 4 4 0 Zinc-finger double domain NMD3 PF04981.13 gi|330506437|ref|YP_004382865.1| - 6.9 6.1 9.6 8 5.8 9.6 1.0 1 0 0 1 1 1 0 NMD3 family zinc_ribbon_2 PF13240.6 gi|330506437|ref|YP_004382865.1| - 7 6.5 19.8 0.5 10.2 3.7 3.2 2 2 0 2 2 2 0 zinc-ribbon domain AA_kinase PF00696.28 gi|330506438|ref|YP_004382866.1| - 1e-11 44.9 0.0 2.5e-05 24.0 0.0 2.1 1 1 0 2 2 2 2 Amino acid kinase family PucR PF07905.11 gi|330506438|ref|YP_004382866.1| - 0.12 12.6 0.0 0.81 10.0 0.0 2.1 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family NUDIX PF00293.28 gi|330506439|ref|YP_004382867.1| - 3.8e-22 78.7 0.0 4.7e-22 78.4 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|330506439|ref|YP_004382867.1| - 0.18 11.3 0.0 0.84 9.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4916) tRNA-synt_1c PF00749.21 gi|330506440|ref|YP_004382868.1| - 6e-65 219.2 0.0 7.6e-65 218.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|330506440|ref|YP_004382868.1| - 2.8e-23 82.7 0.0 4.6e-23 82.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain CHAT PF12770.7 gi|330506441|ref|YP_004382869.1| - 5.9e-27 94.8 0.2 6.4e-27 94.7 0.2 1.0 1 0 0 1 1 1 1 CHAT domain Acylphosphatase PF00708.18 gi|330506442|ref|YP_004382870.1| - 1.8e-19 69.9 0.1 5.8e-19 68.3 0.1 2.0 2 0 0 2 2 2 1 Acylphosphatase Snapin_Pallidin PF14712.6 gi|330506442|ref|YP_004382870.1| - 3.4e-06 27.4 3.1 0.14 12.6 0.1 4.4 2 1 3 5 5 4 2 Snapin/Pallidin Apolipoprotein PF01442.18 gi|330506442|ref|YP_004382870.1| - 0.00029 20.8 1.1 0.016 15.1 1.1 2.4 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF4559 PF15112.6 gi|330506442|ref|YP_004382870.1| - 0.0012 18.6 0.1 0.034 13.8 0.1 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4559) Baculo_PEP_C PF04513.12 gi|330506442|ref|YP_004382870.1| - 0.0041 17.2 0.0 4.1 7.4 0.0 2.9 1 1 2 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|330506442|ref|YP_004382870.1| - 0.012 15.9 0.0 1.2 9.5 0.0 2.8 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|330506442|ref|YP_004382870.1| - 0.013 15.5 3.2 1 9.4 0.1 2.8 2 1 2 4 4 4 0 Protein of unknown function (DUF1664) ALIX_LYPXL_bnd PF13949.6 gi|330506442|ref|YP_004382870.1| - 0.013 14.8 1.5 0.024 14.0 1.5 1.4 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV CREPT PF16566.5 gi|330506442|ref|YP_004382870.1| - 0.039 14.1 0.1 1.9 8.7 0.0 3.1 3 1 0 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour KxDL PF10241.9 gi|330506442|ref|YP_004382870.1| - 0.072 13.4 0.7 1.7 9.0 0.0 2.8 2 1 0 2 2 2 0 Uncharacterized conserved protein Spc7 PF08317.11 gi|330506442|ref|YP_004382870.1| - 0.075 11.9 1.2 0.15 10.9 1.2 1.5 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF1115 PF06544.12 gi|330506442|ref|YP_004382870.1| - 0.092 12.8 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) Nup88 PF10168.9 gi|330506442|ref|YP_004382870.1| - 0.1 10.4 0.8 1.4 6.6 0.1 1.9 1 1 1 2 2 2 0 Nuclear pore component TMPIT PF07851.13 gi|330506442|ref|YP_004382870.1| - 0.1 11.8 0.7 3.9 6.6 0.0 2.1 1 1 1 2 2 2 0 TMPIT-like protein Prominin PF05478.11 gi|330506442|ref|YP_004382870.1| - 0.11 10.4 0.1 3 5.7 0.0 1.8 1 1 1 2 2 2 0 Prominin UPF0184 PF03670.13 gi|330506442|ref|YP_004382870.1| - 0.18 12.2 2.3 2.9 8.3 0.1 3.5 1 1 3 4 4 4 0 Uncharacterised protein family (UPF0184) DUF5610 PF18433.1 gi|330506442|ref|YP_004382870.1| - 0.52 10.8 5.0 9.7 6.7 0.5 2.7 1 1 3 4 4 4 0 Domain of unknown function (DUF5610) DUF5446 PF17522.2 gi|330506442|ref|YP_004382870.1| - 0.59 10.3 3.4 2.1 8.6 0.8 3.0 2 2 1 3 3 3 0 Family of unknown function (DUF5446) UbiA PF01040.18 gi|330506443|ref|YP_004382871.1| - 1.4e-38 132.7 18.3 1.8e-38 132.3 18.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1378 PF07125.11 gi|330506443|ref|YP_004382871.1| - 0.034 14.3 0.4 1.3 9.2 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1378) S_4TM PF18159.1 gi|330506443|ref|YP_004382871.1| - 9.7 5.4 6.9 14 4.9 0.0 2.5 3 0 0 3 3 3 0 SMODS-associating 4TM effector domain MarR_2 PF12802.7 gi|330506444|ref|YP_004382872.1| - 0.00017 21.4 0.1 0.00037 20.3 0.1 1.6 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|330506444|ref|YP_004382872.1| - 0.00025 21.1 0.0 0.00046 20.3 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|330506444|ref|YP_004382872.1| - 0.0015 18.4 0.0 0.0041 17.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|330506444|ref|YP_004382872.1| - 0.13 12.7 0.0 0.29 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain tRNA_deacylase PF04414.12 gi|330506445|ref|YP_004382873.1| - 1.7e-49 168.2 0.0 1.9e-49 168.0 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase MarR_2 PF12802.7 gi|330506446|ref|YP_004382874.1| - 5.7e-07 29.3 0.0 0.029 14.3 0.0 3.2 3 0 0 3 3 3 2 MarR family HTH_Crp_2 PF13545.6 gi|330506446|ref|YP_004382874.1| - 0.00013 21.9 0.1 3.6 7.6 0.0 3.8 4 0 0 4 4 4 2 Crp-like helix-turn-helix domain MarR PF01047.22 gi|330506446|ref|YP_004382874.1| - 0.0004 20.2 0.0 1.1 9.3 0.0 2.4 2 0 0 2 2 2 2 MarR family B-block_TFIIIC PF04182.12 gi|330506446|ref|YP_004382874.1| - 0.00054 20.1 0.0 0.12 12.6 0.0 3.1 3 0 0 3 3 3 1 B-block binding subunit of TFIIIC HTH_3 PF01381.22 gi|330506446|ref|YP_004382874.1| - 0.013 15.6 0.0 3 8.0 0.0 3.4 5 0 0 5 5 5 0 Helix-turn-helix TrmB PF01978.19 gi|330506446|ref|YP_004382874.1| - 0.015 15.1 0.1 19 5.2 0.0 3.3 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB ACBP PF00887.19 gi|330506446|ref|YP_004382874.1| - 0.074 13.3 0.0 5.5 7.3 0.0 2.4 2 0 0 2 2 2 0 Acyl CoA binding protein HTH_24 PF13412.6 gi|330506446|ref|YP_004382874.1| - 0.16 11.6 0.0 0.84 9.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|330506446|ref|YP_004382874.1| - 0.18 11.8 0.2 5.8 7.0 0.0 2.9 2 1 0 2 2 2 0 Helix-turn-helix domain Cpn60_TCP1 PF00118.24 gi|330506447|ref|YP_004382875.1| - 1.2e-179 598.1 23.5 1.3e-179 597.9 23.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3924 PF13062.6 gi|330506447|ref|YP_004382875.1| - 0.065 13.2 0.4 0.32 11.0 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3924) TrwC PF08751.11 gi|330506447|ref|YP_004382875.1| - 0.19 11.2 0.9 0.25 10.8 0.1 1.6 2 0 0 2 2 2 0 TrwC relaxase AAA PF00004.29 gi|330506448|ref|YP_004382876.1| - 1.8e-44 151.4 1.3 3.7e-44 150.3 0.1 2.2 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|330506448|ref|YP_004382876.1| - 4e-11 42.5 1.0 1.2e-10 41.0 1.0 1.9 1 0 0 1 1 1 1 AAA+ lid domain RuvB_N PF05496.12 gi|330506448|ref|YP_004382876.1| - 1.4e-05 24.9 0.2 7.8e-05 22.5 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|330506448|ref|YP_004382876.1| - 3e-05 24.5 0.2 0.0012 19.3 0.1 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|330506448|ref|YP_004382876.1| - 0.00019 21.4 0.3 0.0029 17.6 0.3 2.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|330506448|ref|YP_004382876.1| - 0.00032 21.0 0.3 0.014 15.6 0.3 2.7 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|330506448|ref|YP_004382876.1| - 0.00041 20.5 1.5 0.00059 20.0 0.0 2.0 3 0 0 3 3 2 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.6 gi|330506448|ref|YP_004382876.1| - 0.0014 18.7 0.0 0.0038 17.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|330506448|ref|YP_004382876.1| - 0.0014 17.9 0.4 0.0037 16.5 0.0 1.8 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_17 PF13207.6 gi|330506448|ref|YP_004382876.1| - 0.0017 18.8 0.5 0.028 14.8 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|330506448|ref|YP_004382876.1| - 0.0027 17.9 0.1 0.0098 16.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|330506448|ref|YP_004382876.1| - 0.008 16.7 0.2 0.072 13.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|330506448|ref|YP_004382876.1| - 0.012 14.8 0.0 0.024 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|330506448|ref|YP_004382876.1| - 0.014 15.8 0.0 0.027 14.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.21 gi|330506448|ref|YP_004382876.1| - 0.023 14.1 0.1 0.046 13.1 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|330506448|ref|YP_004382876.1| - 0.023 14.4 0.1 0.27 10.9 0.0 2.5 3 0 0 3 3 2 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|330506448|ref|YP_004382876.1| - 0.026 14.2 0.0 0.066 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|330506448|ref|YP_004382876.1| - 0.029 14.3 0.1 0.16 11.9 0.1 2.2 1 1 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.17 gi|330506448|ref|YP_004382876.1| - 0.042 13.6 0.0 0.086 12.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein SKA2 PF16740.5 gi|330506448|ref|YP_004382876.1| - 0.1 12.4 1.6 0.32 10.8 1.6 1.8 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 baeRF_family11 PF18855.1 gi|330506448|ref|YP_004382876.1| - 0.1 12.9 0.8 1.3 9.3 0.1 2.5 1 1 1 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 11 FlaC_arch PF05377.11 gi|330506448|ref|YP_004382876.1| - 0.26 11.7 2.1 17 5.9 0.5 2.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) ATPase PF06745.13 gi|330506448|ref|YP_004382876.1| - 0.34 10.2 5.6 0.36 10.1 0.0 3.0 3 1 1 4 4 4 0 KaiC JIP_LZII PF16471.5 gi|330506448|ref|YP_004382876.1| - 0.41 10.8 4.6 0.57 10.4 1.2 2.5 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II YabA PF06156.13 gi|330506448|ref|YP_004382876.1| - 1.6 9.4 3.6 3.8 8.2 1.4 2.5 2 1 1 3 3 3 0 Initiation control protein YabA DUF5611 PF18446.1 gi|330506449|ref|YP_004382877.1| - 1.1e-28 100.0 1.4 1.3e-28 99.9 1.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) RACo_linker PF17650.1 gi|330506449|ref|YP_004382877.1| - 0.059 13.2 0.0 0.085 12.7 0.0 1.3 1 1 0 1 1 1 0 RACo linker region Enolase_C PF00113.22 gi|330506450|ref|YP_004382878.1| - 1.4e-106 356.1 0.0 1.7e-106 355.8 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|330506450|ref|YP_004382878.1| - 4.3e-59 198.4 0.0 7.3e-59 197.6 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|330506450|ref|YP_004382878.1| - 0.00063 19.4 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|330506450|ref|YP_004382878.1| - 0.1 11.7 0.2 0.7 9.0 0.0 2.1 2 0 0 2 2 2 0 Methylaspartate ammonia-lyase C-terminus FlaA PF04620.12 gi|330506450|ref|YP_004382878.1| - 0.22 11.2 0.0 0.37 10.4 0.0 1.4 1 0 0 1 1 1 0 Flagellar filament outer layer protein Flaa Cation_efflux PF01545.21 gi|330506451|ref|YP_004382879.1| - 2.5e-47 161.2 11.1 3.1e-47 160.9 11.1 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|330506451|ref|YP_004382879.1| - 2e-24 85.5 0.4 3.1e-24 84.9 0.4 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter MerC PF03203.14 gi|330506451|ref|YP_004382879.1| - 2 8.9 7.1 11 6.5 0.6 2.6 1 1 1 2 2 2 0 MerC mercury resistance protein Usp PF00582.26 gi|330506452|ref|YP_004382880.1| - 2.2e-30 106.0 0.1 2.5e-30 105.8 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family OrfB_IS605 PF01385.19 gi|330506453|ref|YP_004382881.1| - 2.4e-21 76.2 0.0 7.5e-21 74.6 0.0 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|330506453|ref|YP_004382881.1| - 1.9e-19 69.3 0.1 3.9e-19 68.3 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Pestivirus_E2 PF16329.5 gi|330506453|ref|YP_004382881.1| - 0.0068 15.3 0.1 0.0088 14.9 0.1 1.1 1 0 0 1 1 1 1 Pestivirus envelope glycoprotein E2 DZR PF12773.7 gi|330506453|ref|YP_004382881.1| - 0.024 14.7 0.2 0.039 14.0 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon OpuAC PF04069.12 gi|330506453|ref|YP_004382881.1| - 0.026 14.1 0.0 0.035 13.7 0.0 1.1 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system FeoB_Cyto PF17910.1 gi|330506453|ref|YP_004382881.1| - 0.12 12.9 0.2 0.33 11.5 0.2 1.7 1 1 0 1 1 1 0 FeoB cytosolic helical domain RecR PF02132.15 gi|330506453|ref|YP_004382881.1| - 0.58 9.8 3.4 13 5.5 0.5 2.6 1 1 1 2 2 2 0 RecR protein Catalase PF00199.19 gi|330506454|ref|YP_004382882.1| - 6.6e-189 627.9 0.3 8.1e-189 627.6 0.3 1.1 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.12 gi|330506454|ref|YP_004382882.1| - 3.5e-22 78.4 0.0 7e-22 77.4 0.0 1.5 1 0 0 1 1 1 1 Catalase-related immune-responsive Rubrerythrin PF02915.17 gi|330506455|ref|YP_004382883.1| - 3.7e-34 118.1 1.3 5.1e-34 117.6 1.3 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|330506455|ref|YP_004382883.1| - 8.7e-07 29.0 0.4 1.6e-06 28.1 0.4 1.4 1 1 0 1 1 1 1 Ferritin-like domain HypA PF01155.19 gi|330506455|ref|YP_004382883.1| - 0.0074 16.3 1.0 0.015 15.3 1.0 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MCM_OB PF17207.3 gi|330506455|ref|YP_004382883.1| - 0.037 13.9 0.3 0.059 13.2 0.3 1.3 1 0 0 1 1 1 0 MCM OB domain zf-C2HC5 PF06221.13 gi|330506455|ref|YP_004382883.1| - 0.095 12.7 0.2 0.18 11.8 0.2 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type RNA_POL_M_15KD PF02150.16 gi|330506455|ref|YP_004382883.1| - 0.18 11.7 0.1 0.18 11.7 0.1 2.6 4 0 0 4 4 4 0 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.6 gi|330506455|ref|YP_004382883.1| - 0.18 11.7 3.3 2.1 8.4 0.1 3.1 3 0 0 3 3 3 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|330506455|ref|YP_004382883.1| - 0.19 11.9 2.8 0.45 10.7 2.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF4379 PF14311.6 gi|330506455|ref|YP_004382883.1| - 0.98 9.8 5.5 3.1 8.2 5.5 2.0 1 1 0 1 1 1 0 Probable Zinc-ribbon domain HalOD2 PF18547.1 gi|330506455|ref|YP_004382883.1| - 1.5 8.8 6.8 0.81 9.6 0.3 2.6 2 1 1 3 3 3 0 Halobacterial output domain 2 Rubredoxin_2 PF18073.1 gi|330506455|ref|YP_004382883.1| - 1.8 8.3 5.5 0.7 9.7 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Toast_rack_N PF17115.5 gi|330506456|ref|YP_004382884.1| - 0.048 13.9 0.0 0.08 13.2 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of toast_rack, DUF2154 TPR_2 PF07719.17 gi|330506457|ref|YP_004382885.1| - 3e-29 98.7 18.7 1.2e-06 28.2 0.1 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330506457|ref|YP_004382885.1| - 1.8e-27 94.0 20.5 4.9e-07 29.3 0.2 6.6 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330506457|ref|YP_004382885.1| - 2.7e-21 74.9 30.2 2.7e-05 23.8 0.2 6.0 2 2 4 6 6 6 5 TPR repeat TPR_19 PF14559.6 gi|330506457|ref|YP_004382885.1| - 9.5e-21 74.1 13.6 4.5e-08 33.5 1.2 4.1 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330506457|ref|YP_004382885.1| - 6.2e-20 71.6 12.7 1.5e-09 38.3 0.9 4.2 3 2 2 5 5 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330506457|ref|YP_004382885.1| - 1.3e-18 65.5 17.6 0.0015 18.6 0.1 6.2 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330506457|ref|YP_004382885.1| - 5.3e-16 57.9 7.5 0.0011 19.7 0.0 5.8 2 2 4 6 6 6 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330506457|ref|YP_004382885.1| - 2.4e-13 49.5 15.7 0.0067 16.7 0.1 6.4 6 1 0 6 6 6 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330506457|ref|YP_004382885.1| - 7.8e-10 38.9 15.2 0.0005 20.3 2.3 5.1 1 1 4 5 5 5 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330506457|ref|YP_004382885.1| - 8.6e-08 32.1 2.4 0.00041 20.4 0.2 4.2 3 1 1 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.6 gi|330506457|ref|YP_004382885.1| - 2.7e-07 30.2 2.9 0.025 14.6 0.0 4.8 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330506457|ref|YP_004382885.1| - 1.6e-06 28.4 13.0 0.05 14.3 0.1 5.0 5 0 0 5 5 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330506457|ref|YP_004382885.1| - 6.3e-06 26.3 11.0 7e-05 23.0 1.1 3.1 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|330506457|ref|YP_004382885.1| - 4.3e-05 23.6 1.4 0.79 9.9 0.1 3.5 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_4 PF07721.14 gi|330506457|ref|YP_004382885.1| - 0.00016 21.9 0.2 2.7 8.9 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|330506457|ref|YP_004382885.1| - 0.00027 20.7 3.8 0.36 10.5 0.0 3.7 2 2 1 3 3 3 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_10 PF13374.6 gi|330506457|ref|YP_004382885.1| - 0.00061 19.6 5.9 1.7 8.6 0.1 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat RNase_PH_C PF03725.15 gi|330506457|ref|YP_004382885.1| - 0.0011 18.9 0.0 0.44 10.6 0.0 2.5 1 1 1 2 2 2 1 3' exoribonuclease family, domain 2 NARP1 PF12569.8 gi|330506457|ref|YP_004382885.1| - 0.0016 17.5 1.6 3.2 6.6 0.0 2.9 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 DUF3856 PF12968.7 gi|330506457|ref|YP_004382885.1| - 0.077 13.1 3.0 1.2 9.2 1.1 3.3 1 1 1 3 3 3 0 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|330506457|ref|YP_004382885.1| - 0.12 12.8 1.5 1.5 9.3 0.1 2.8 2 1 1 3 3 3 0 Bacterial transcriptional activator domain MIT PF04212.18 gi|330506457|ref|YP_004382885.1| - 2 8.5 14.7 1.5 9.0 0.1 5.0 4 1 2 6 6 6 0 MIT (microtubule interacting and transport) domain GATase_6 PF13522.6 gi|330506458|ref|YP_004382886.1| - 5.1e-22 78.5 0.0 7.2e-22 78.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|330506458|ref|YP_004382886.1| - 6.3e-20 71.3 0.0 1.5e-19 70.1 0.0 1.6 1 1 1 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|330506458|ref|YP_004382886.1| - 2.5e-05 23.3 0.0 3.1e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF1699 PF08004.11 gi|330506459|ref|YP_004382887.1| - 2.6e-59 198.6 0.5 2.9e-59 198.4 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Merozoite_SPAM PF07133.11 gi|330506459|ref|YP_004382887.1| - 0.058 13.4 0.0 0.089 12.8 0.0 1.3 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) HTH_9 PF08221.11 gi|330506459|ref|YP_004382887.1| - 0.086 13.0 0.1 0.16 12.1 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain SKA2 PF16740.5 gi|330506459|ref|YP_004382887.1| - 0.1 12.4 1.8 0.82 9.5 0.1 2.1 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 2 IFNGR1 PF07140.11 gi|330506460|ref|YP_004382888.1| - 0.14 12.2 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 Interferon gamma receptor (IFNGR1) PALP PF00291.25 gi|330506461|ref|YP_004382889.1| - 2.3e-25 89.6 0.0 9.2e-25 87.6 0.0 1.9 2 1 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 gi|330506461|ref|YP_004382889.1| - 2.3e-21 75.8 0.1 9.8e-21 73.8 0.0 2.2 3 0 0 3 3 3 1 Threonine synthase N terminus CUE PF02845.16 gi|330506461|ref|YP_004382889.1| - 0.15 11.8 0.0 2.2 8.1 0.0 2.6 2 0 0 2 2 2 0 CUE domain CBS PF00571.28 gi|330506462|ref|YP_004382890.1| - 7.7e-40 135.1 13.4 1.5e-12 47.7 0.5 4.2 4 0 0 4 4 4 4 CBS domain GAF PF01590.26 gi|330506462|ref|YP_004382890.1| - 0.066 13.8 0.0 11 6.6 0.0 2.5 1 1 1 2 2 2 0 GAF domain RuvB_C PF05491.13 gi|330506462|ref|YP_004382890.1| - 0.09 12.7 0.1 0.25 11.2 0.1 1.8 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Usp PF00582.26 gi|330506463|ref|YP_004382891.1| - 2.7e-33 115.4 0.3 3e-33 115.3 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family SRP54 PF00448.22 gi|330506463|ref|YP_004382891.1| - 0.01 15.5 0.2 0.05 13.2 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SpoU_sub_bind PF08032.12 gi|330506463|ref|YP_004382891.1| - 0.085 13.1 0.5 11 6.3 0.0 2.8 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding Amidohydro_1 PF01979.20 gi|330506464|ref|YP_004382892.1| - 1.5e-35 123.1 0.0 1.5e-33 116.5 0.0 2.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|330506464|ref|YP_004382892.1| - 4.2e-12 46.3 0.1 3.4e-11 43.3 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|330506464|ref|YP_004382892.1| - 1.5e-05 24.5 0.0 2.3e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase RibD_C PF01872.17 gi|330506465|ref|YP_004382893.1| - 7.5e-53 179.3 0.0 8.4e-53 179.2 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF3387 PF11867.8 gi|330506466|ref|YP_004382894.1| - 0.0022 17.4 2.0 0.0025 17.3 2.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) SAM_Exu PF18609.1 gi|330506466|ref|YP_004382894.1| - 0.025 14.7 0.0 0.035 14.2 0.0 1.3 1 1 0 1 1 1 0 Exuperantia SAM-like domain PLDc_2 PF13091.6 gi|330506468|ref|YP_004382896.1| - 1.6e-05 24.8 0.0 4.9e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 PLD-like domain Helicase_C PF00271.31 gi|330506469|ref|YP_004382897.1| - 2.6e-06 27.7 0.0 8.4e-06 26.1 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|330506469|ref|YP_004382897.1| - 0.00025 20.9 0.0 0.12 12.2 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|330506469|ref|YP_004382897.1| - 0.0017 18.3 0.0 0.05 13.6 0.0 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|330506469|ref|YP_004382897.1| - 0.0051 17.2 0.1 0.65 10.4 0.1 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_34 PF13872.6 gi|330506469|ref|YP_004382897.1| - 0.0055 15.6 0.0 1 8.2 0.0 2.2 2 0 0 2 2 2 2 P-loop containing NTP hydrolase pore-1 AAA_22 PF13401.6 gi|330506469|ref|YP_004382897.1| - 0.022 15.0 0.0 1 9.6 0.0 2.9 2 0 0 2 2 2 0 AAA domain AGOG PF09171.10 gi|330506469|ref|YP_004382897.1| - 0.031 13.6 0.0 0.061 12.6 0.0 1.4 1 0 0 1 1 1 0 N-glycosylase/DNA lyase UPF0061 PF02696.14 gi|330506469|ref|YP_004382897.1| - 0.13 11.0 0.0 0.23 10.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized ACR, YdiU/UPF0061 family SNF2_N PF00176.23 gi|330506469|ref|YP_004382897.1| - 0.15 10.8 0.0 9.8 4.8 0.0 2.2 2 0 0 2 2 2 0 SNF2 family N-terminal domain DUF5087 PF17006.5 gi|330506470|ref|YP_004382898.1| - 0.056 13.0 0.1 0.072 12.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5087) PIN PF01850.21 gi|330506471|ref|YP_004382899.1| - 4.3e-18 66.0 0.0 6.3e-18 65.4 0.0 1.3 1 0 0 1 1 1 1 PIN domain OrfB_Zn_ribbon PF07282.11 gi|330506472|ref|YP_004382900.1| - 2.7e-24 84.9 0.4 4.8e-24 84.1 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330506472|ref|YP_004382900.1| - 5.4e-21 75.0 0.0 1.2e-20 74.0 0.0 1.5 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|330506472|ref|YP_004382900.1| - 7.3e-14 51.0 1.9 1.6e-13 49.9 1.9 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain RuvC_1 PF18516.1 gi|330506472|ref|YP_004382900.1| - 0.038 13.2 0.1 0.055 12.6 0.1 1.4 1 0 0 1 1 1 0 RuvC nuclease domain DZR PF12773.7 gi|330506472|ref|YP_004382900.1| - 0.041 13.9 2.4 0.072 13.1 2.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|330506472|ref|YP_004382900.1| - 0.046 13.6 3.0 0.09 12.7 3.0 1.5 1 0 0 1 1 1 0 SprT-like zinc ribbon domain DUF104 PF01954.16 gi|330506473|ref|YP_004382901.1| - 5.7e-19 68.3 0.7 6.6e-19 68.1 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Intein_splicing PF14890.6 gi|330506474|ref|YP_004382902.1| - 1.6e-10 41.0 0.0 3.4e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 Intein splicing domain Hom_end_hint PF05203.16 gi|330506474|ref|YP_004382902.1| - 1.4e-06 28.4 0.4 8e-06 26.0 0.1 2.2 1 1 1 2 2 2 1 Hom_end-associated Hint PT-HINT PF07591.11 gi|330506474|ref|YP_004382902.1| - 1.4e-05 25.4 0.0 3.7e-05 24.0 0.0 1.8 1 0 0 1 1 1 1 Pretoxin HINT domain Hint PF01079.20 gi|330506474|ref|YP_004382902.1| - 0.00019 21.0 0.0 0.0008 19.0 0.0 2.0 1 1 1 2 2 2 1 Hint module Vint PF14623.6 gi|330506474|ref|YP_004382902.1| - 0.035 13.9 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 Hint-domain Hint_2 PF13403.6 gi|330506474|ref|YP_004382902.1| - 0.14 12.5 0.0 22 5.4 0.1 2.3 2 0 0 2 2 2 0 Hint domain DDE_Tnp_2 PF04693.12 gi|330506476|ref|YP_004382904.1| - 2.2e-14 53.4 7.1 5.4e-13 48.9 7.1 2.5 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_5 PF13546.6 gi|330506476|ref|YP_004382904.1| - 9.2e-13 48.1 0.0 2e-12 47.0 0.0 1.5 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|330506476|ref|YP_004382904.1| - 5e-11 42.6 0.5 7.9e-11 42.0 0.5 1.2 1 0 0 1 1 1 1 Transposase DDE domain Bac_DNA_binding PF00216.21 gi|330506476|ref|YP_004382904.1| - 0.028 14.6 0.8 0.24 11.6 0.2 2.7 3 0 0 3 3 3 0 Bacterial DNA-binding protein Laminin_G_3 PF13385.6 gi|330506477|ref|YP_004382905.1| - 9.1e-12 45.4 0.0 1.5e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily MFS_1 PF07690.16 gi|330506477|ref|YP_004382905.1| - 0.0053 15.7 0.5 0.0091 15.0 0.5 1.4 1 0 0 1 1 1 1 Major Facilitator Superfamily TraT PF05818.12 gi|330506477|ref|YP_004382905.1| - 0.036 13.7 0.1 0.06 13.0 0.1 1.3 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DDE_Tnp_ISL3 PF01610.17 gi|330506478|ref|YP_004382906.1| - 5e-76 255.6 1.2 9.9e-76 254.6 0.6 1.7 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 gi|330506478|ref|YP_004382906.1| - 3.3e-14 52.0 0.1 6.3e-14 51.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 gi|330506478|ref|YP_004382906.1| - 1.9e-10 41.2 6.3 5e-10 39.9 6.3 1.7 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 fn3_5 PF06280.12 gi|330506479|ref|YP_004382907.1| - 0.057 14.1 0.0 0.15 12.8 0.0 1.6 1 0 0 1 1 1 0 Fn3-like domain GDPD PF03009.17 gi|330506480|ref|YP_004382908.1| - 2.8e-10 40.4 0.0 3e-10 40.3 0.0 1.0 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Glyco_hydro_97 PF10566.9 gi|330506480|ref|YP_004382908.1| - 0.081 12.2 0.0 0.087 12.1 0.0 1.1 1 0 0 1 1 1 0 Glycoside hydrolase 97 MarR PF01047.22 gi|330506481|ref|YP_004382909.1| - 0.098 12.6 0.1 0.52 10.3 0.0 1.9 2 0 0 2 2 2 0 MarR family TrkH PF02386.16 gi|330506482|ref|YP_004382910.1| - 9.7e-52 176.0 27.3 4.3e-29 101.3 7.7 3.0 2 1 1 3 3 3 3 Cation transport protein TRAP-gamma PF07074.12 gi|330506482|ref|YP_004382910.1| - 0.069 12.7 0.6 0.19 11.3 0.6 1.8 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) YL1_C PF08265.11 gi|330506483|ref|YP_004382911.1| - 0.042 13.6 4.8 2.5 7.9 0.3 3.6 3 0 0 3 3 3 0 YL1 nuclear protein C-terminal domain PepSY PF03413.19 gi|330506483|ref|YP_004382911.1| - 0.083 13.5 0.3 0.17 12.5 0.3 1.5 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain HTH_3 PF01381.22 gi|330506484|ref|YP_004382912.1| - 2.5e-08 33.8 0.1 6.2e-08 32.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 gi|330506484|ref|YP_004382912.1| - 0.0019 18.6 0.0 0.0048 17.3 0.0 1.7 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 gi|330506484|ref|YP_004382912.1| - 0.0047 16.9 0.0 0.0097 15.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain PrpR_N PF06506.11 gi|330506484|ref|YP_004382912.1| - 0.0053 16.3 0.5 0.0081 15.7 0.5 1.3 1 0 0 1 1 1 1 Propionate catabolism activator HTH_31 PF13560.6 gi|330506484|ref|YP_004382912.1| - 0.041 14.2 0.3 0.26 11.7 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_psq PF05225.16 gi|330506484|ref|YP_004382912.1| - 0.059 13.1 0.3 0.63 9.8 0.0 2.3 2 0 0 2 2 2 0 helix-turn-helix, Psq domain Mg_chelatase_C PF13335.6 gi|330506484|ref|YP_004382912.1| - 0.11 13.1 0.0 0.11 13.1 0.0 1.9 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI C-terminal TrmB PF01978.19 gi|330506484|ref|YP_004382912.1| - 0.13 12.2 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PALP PF00291.25 gi|330506485|ref|YP_004382913.1| - 8.4e-31 107.5 0.0 1e-30 107.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ABC_tran PF00005.27 gi|330506486|ref|YP_004382914.1| - 1.1e-14 55.1 0.0 1.7e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330506486|ref|YP_004382914.1| - 2.4e-09 37.5 0.3 0.00055 19.9 0.0 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|330506486|ref|YP_004382914.1| - 7.2e-06 26.5 0.0 1.2e-05 25.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|330506486|ref|YP_004382914.1| - 8.1e-06 25.4 0.3 3e-05 23.6 0.3 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|330506486|ref|YP_004382914.1| - 9.9e-05 22.0 0.1 0.00024 20.8 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|330506486|ref|YP_004382914.1| - 0.00014 22.4 0.0 0.00019 22.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|330506486|ref|YP_004382914.1| - 0.00027 21.2 0.3 0.0034 17.6 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|330506486|ref|YP_004382914.1| - 0.00085 19.4 0.0 0.17 11.9 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|330506486|ref|YP_004382914.1| - 0.0057 16.4 0.1 0.025 14.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|330506486|ref|YP_004382914.1| - 0.0089 16.0 1.0 3.3 7.6 0.1 2.2 2 0 0 2 2 2 2 NTPase ATPase_2 PF01637.18 gi|330506486|ref|YP_004382914.1| - 0.011 15.6 1.1 0.15 12.0 1.1 2.1 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|330506486|ref|YP_004382914.1| - 0.022 14.6 0.2 0.081 12.8 0.2 2.0 1 1 0 1 1 1 0 RsgA GTPase NB-ARC PF00931.22 gi|330506486|ref|YP_004382914.1| - 0.025 13.8 0.0 0.047 12.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|330506486|ref|YP_004382914.1| - 0.04 14.5 0.0 0.12 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|330506486|ref|YP_004382914.1| - 0.043 13.9 0.9 0.13 12.4 0.7 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_2 PF07724.14 gi|330506486|ref|YP_004382914.1| - 0.06 13.5 0.0 0.19 11.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_25 PF13481.6 gi|330506486|ref|YP_004382914.1| - 0.074 12.6 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|330506486|ref|YP_004382914.1| - 0.079 12.7 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|330506486|ref|YP_004382914.1| - 0.086 11.6 0.1 0.13 11.0 0.1 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_5 PF07728.14 gi|330506486|ref|YP_004382914.1| - 0.086 12.8 0.1 4.7 7.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|330506486|ref|YP_004382914.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_7 PF12775.7 gi|330506486|ref|YP_004382914.1| - 0.15 11.5 0.1 0.78 9.2 0.0 1.9 1 1 1 2 2 2 0 P-loop containing dynein motor region AAA PF00004.29 gi|330506486|ref|YP_004382914.1| - 0.23 11.9 1.9 4.8 7.6 1.9 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|330506487|ref|YP_004382915.1| - 4.8e-09 36.0 0.0 1.2e-08 34.8 0.0 1.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|330506487|ref|YP_004382915.1| - 0.00023 21.5 0.1 0.00037 20.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|330506487|ref|YP_004382915.1| - 0.0017 18.9 0.0 0.003 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|330506487|ref|YP_004382915.1| - 0.005 17.2 0.0 0.031 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain DUF2075 PF09848.9 gi|330506487|ref|YP_004382915.1| - 0.0056 16.0 0.0 0.0071 15.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|330506487|ref|YP_004382915.1| - 0.011 15.1 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin UvrD-helicase PF00580.21 gi|330506487|ref|YP_004382915.1| - 0.02 14.4 0.3 0.027 14.0 0.3 1.1 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain MeaB PF03308.16 gi|330506487|ref|YP_004382915.1| - 0.076 12.0 0.1 0.21 10.5 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Viral_helicase1 PF01443.18 gi|330506487|ref|YP_004382915.1| - 0.092 12.5 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_5 PF07728.14 gi|330506487|ref|YP_004382915.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.14 gi|330506487|ref|YP_004382915.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|330506487|ref|YP_004382915.1| - 0.13 12.3 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 gi|330506487|ref|YP_004382915.1| - 0.16 11.8 0.1 0.3 11.0 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|330506487|ref|YP_004382915.1| - 0.19 11.4 0.2 0.29 10.8 0.2 1.3 1 0 0 1 1 1 0 AAA domain FeS PF04060.13 gi|330506488|ref|YP_004382916.1| - 9.3e-10 38.0 1.0 9.3e-10 38.0 1.0 2.2 2 0 0 2 2 2 1 Putative Fe-S cluster HI0933_like PF03486.14 gi|330506491|ref|YP_004382919.1| - 2.3e-114 382.3 0.0 2.7e-114 382.1 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|330506491|ref|YP_004382919.1| - 5e-11 42.4 0.0 7.1e-05 22.2 0.0 2.9 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|330506491|ref|YP_004382919.1| - 5.3e-06 25.9 0.0 3.8e-05 23.1 0.0 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|330506491|ref|YP_004382919.1| - 4.5e-05 22.7 0.2 0.0035 16.5 0.0 2.9 2 1 0 3 3 3 1 FAD binding domain DAO PF01266.24 gi|330506491|ref|YP_004382919.1| - 0.0003 20.5 0.0 0.00046 19.9 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|330506491|ref|YP_004382919.1| - 0.0003 20.9 0.0 0.0008 19.6 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|330506491|ref|YP_004382919.1| - 0.00058 19.0 0.0 0.59 9.1 0.0 2.6 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|330506491|ref|YP_004382919.1| - 0.006 16.6 0.0 0.1 12.6 0.0 2.5 2 1 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.17 gi|330506491|ref|YP_004382919.1| - 0.018 14.3 0.0 0.035 13.3 0.0 1.4 1 0 0 1 1 1 0 Thi4 family TPR_1 PF00515.28 gi|330506492|ref|YP_004382920.1| - 6.5e-26 89.0 8.5 5.3e-09 35.5 0.2 4.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330506492|ref|YP_004382920.1| - 1.3e-21 76.0 2.3 3.9e-12 45.7 0.1 3.2 2 1 1 3 3 3 3 TPR repeat TPR_2 PF07719.17 gi|330506492|ref|YP_004382920.1| - 3.1e-20 70.6 5.6 6.5e-07 29.0 0.1 4.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330506492|ref|YP_004382920.1| - 4e-19 67.2 4.0 3.2e-06 26.9 0.1 4.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330506492|ref|YP_004382920.1| - 1.4e-13 51.3 0.0 2.7e-06 27.9 0.0 2.9 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330506492|ref|YP_004382920.1| - 1.1e-11 44.4 0.0 0.0075 17.0 0.0 3.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330506492|ref|YP_004382920.1| - 1.4e-11 44.7 0.4 0.00015 22.2 0.0 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330506492|ref|YP_004382920.1| - 3.7e-11 42.6 4.6 0.00014 22.0 0.5 3.8 4 0 0 4 4 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330506492|ref|YP_004382920.1| - 2.6e-07 30.8 4.7 2e-05 24.7 0.4 2.2 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|330506492|ref|YP_004382920.1| - 3.1e-07 30.4 0.1 0.0025 17.9 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330506492|ref|YP_004382920.1| - 2e-06 28.0 0.5 0.0051 17.1 0.0 2.9 1 1 2 3 3 3 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330506492|ref|YP_004382920.1| - 0.0005 20.1 1.3 0.28 11.3 0.1 3.2 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat DUF5113 PF17140.4 gi|330506492|ref|YP_004382920.1| - 0.0006 19.7 1.7 0.71 9.7 0.2 2.7 1 1 2 3 3 3 2 Domain of unknown function (DUF5113) TPR_10 PF13374.6 gi|330506492|ref|YP_004382920.1| - 0.001 18.8 1.0 12 6.0 0.0 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat NARP1 PF12569.8 gi|330506492|ref|YP_004382920.1| - 0.008 15.1 0.2 0.12 11.2 0.3 2.1 1 1 1 2 2 2 1 NMDA receptor-regulated protein 1 DUF3856 PF12968.7 gi|330506492|ref|YP_004382920.1| - 0.011 15.8 0.2 8.9 6.4 0.1 3.0 1 1 1 2 2 2 0 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|330506492|ref|YP_004382920.1| - 0.011 16.1 0.1 0.05 14.0 0.1 2.0 1 1 0 1 1 1 0 Bacterial transcriptional activator domain SRP_TPR_like PF17004.5 gi|330506492|ref|YP_004382920.1| - 0.016 15.2 0.5 0.11 12.6 0.1 2.0 1 1 0 2 2 2 0 Putative TPR-like repeat TPR_7 PF13176.6 gi|330506492|ref|YP_004382920.1| - 0.024 14.6 0.0 8.5 6.7 0.0 3.1 4 0 0 4 4 4 0 Tetratricopeptide repeat MIT PF04212.18 gi|330506492|ref|YP_004382920.1| - 0.034 14.2 0.3 0.48 10.5 0.0 2.6 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain YfiO PF13525.6 gi|330506492|ref|YP_004382920.1| - 0.034 13.9 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 Outer membrane lipoprotein IF-2B PF01008.17 gi|330506493|ref|YP_004382921.1| - 7.1e-83 278.1 7.2 8.1e-83 277.9 7.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Rhodanese PF00581.20 gi|330506493|ref|YP_004382921.1| - 0.083 13.4 0.0 0.16 12.5 0.0 1.5 1 0 0 1 1 1 0 Rhodanese-like domain PurS PF02700.14 gi|330506494|ref|YP_004382922.1| - 8.4e-12 45.1 0.5 1.8e-06 28.0 0.0 2.1 2 0 0 2 2 2 2 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.6 gi|330506495|ref|YP_004382923.1| - 9.8e-54 182.2 0.0 1.2e-53 181.9 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|330506495|ref|YP_004382923.1| - 3.2e-09 36.8 0.1 5.7e-09 36.0 0.1 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|330506495|ref|YP_004382923.1| - 1.9e-07 30.9 0.0 3.2e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|330506495|ref|YP_004382923.1| - 1.8e-06 27.8 0.0 4.9e-06 26.4 0.0 1.7 2 0 0 2 2 2 1 DJ-1/PfpI family SNO PF01174.19 gi|330506495|ref|YP_004382923.1| - 0.00048 20.0 0.0 0.0011 18.8 0.0 1.6 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|330506495|ref|YP_004382923.1| - 0.0035 17.1 0.1 0.0065 16.2 0.1 1.5 1 1 0 1 1 1 1 Peptidase C26 AIRS_C PF02769.22 gi|330506496|ref|YP_004382924.1| - 4.6e-39 134.0 0.2 3.4e-19 69.5 0.1 2.5 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|330506496|ref|YP_004382924.1| - 1.6e-32 112.0 1.2 1.7e-15 57.5 0.3 2.7 2 1 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|330506496|ref|YP_004382924.1| - 1.8e-13 50.8 0.0 4.7e-13 49.5 0.0 1.8 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain 2TM PF13239.6 gi|330506497|ref|YP_004382925.1| - 2e-08 34.4 2.3 2.4e-08 34.1 2.3 1.2 1 0 0 1 1 1 1 2TM domain PEMT PF04191.13 gi|330506498|ref|YP_004382926.1| - 0.11 12.8 2.3 0.11 12.9 0.8 1.8 1 1 1 2 2 2 0 Phospholipid methyltransferase Pyridox_ox_2 PF12900.7 gi|330506499|ref|YP_004382927.1| - 1.3e-20 73.8 0.0 1.5e-20 73.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|330506499|ref|YP_004382927.1| - 6.3e-05 23.1 0.0 9.4e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DNA_photolyase PF00875.18 gi|330506500|ref|YP_004382928.1| - 3.3e-29 102.0 0.0 5.4e-29 101.3 0.0 1.3 1 0 0 1 1 1 1 DNA photolyase Transposase_20 PF02371.16 gi|330506501|ref|YP_004382929.1| - 7.2e-25 87.1 0.0 1.6e-24 86.0 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330506501|ref|YP_004382929.1| - 1.3e-22 80.3 0.2 4.7e-22 78.5 0.0 1.9 2 0 0 2 2 2 1 Transposase YfkB PF08756.10 gi|330506501|ref|YP_004382929.1| - 0.0073 16.1 0.1 0.018 14.8 0.1 1.7 1 0 0 1 1 1 1 YfkB-like domain TM1586_NiRdase PF14512.6 gi|330506502|ref|YP_004382930.1| - 1.3e-07 31.4 0.0 0.00034 20.3 0.0 2.9 3 0 0 3 3 3 2 Putative TM nitroreductase Nitroreductase PF00881.24 gi|330506502|ref|YP_004382930.1| - 7.7e-06 26.1 1.9 0.54 10.3 0.0 3.7 2 2 1 3 3 3 3 Nitroreductase family F420H2_quin_red PF04075.14 gi|330506506|ref|YP_004382934.1| - 9.9e-13 48.3 0.0 1.3e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 F420H(2)-dependent quinone reductase SoxZ PF08770.11 gi|330506507|ref|YP_004382935.1| - 0.00056 19.6 0.0 0.00064 19.5 0.0 1.2 1 0 0 1 1 1 1 Sulphur oxidation protein SoxZ Mucin_bdg PF03272.13 gi|330506507|ref|YP_004382935.1| - 0.021 14.8 0.5 0.029 14.4 0.5 1.1 1 0 0 1 1 1 0 Putative mucin or carbohydrate-binding module Desulfoferrodox PF01880.18 gi|330506507|ref|YP_004382935.1| - 0.06 14.0 0.0 0.071 13.7 0.0 1.1 1 0 0 1 1 1 0 Desulfoferrodoxin TGT_C2 PF14810.6 gi|330506508|ref|YP_004382936.1| - 3e-25 88.1 0.1 7.8e-25 86.8 0.0 1.7 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|330506508|ref|YP_004382936.1| - 1.5e-16 60.1 0.2 2.6e-16 59.3 0.2 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|330506508|ref|YP_004382936.1| - 0.023 15.0 0.0 0.034 14.4 0.0 1.3 1 0 0 1 1 1 0 UPF0113 PUA domain Tex_YqgF PF16921.5 gi|330506508|ref|YP_004382936.1| - 0.049 14.1 0.0 0.072 13.5 0.0 1.3 1 0 0 1 1 1 0 Tex protein YqgF-like domain DUF2388 PF09498.10 gi|330506508|ref|YP_004382936.1| - 0.068 13.2 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2388) PUA_3 PF17785.1 gi|330506508|ref|YP_004382936.1| - 0.08 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 PUA-like domain SHMT PF00464.19 gi|330506509|ref|YP_004382937.1| - 1.1e-164 547.9 0.2 1.3e-164 547.6 0.2 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|330506509|ref|YP_004382937.1| - 4.3e-08 32.7 0.0 6e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|330506509|ref|YP_004382937.1| - 5.3e-07 29.2 0.2 2.3e-06 27.1 0.1 1.9 1 1 0 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|330506509|ref|YP_004382937.1| - 0.085 12.1 0.1 0.13 11.5 0.1 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family THF_DHG_CYH_C PF02882.19 gi|330506510|ref|YP_004382938.1| - 7.8e-65 217.1 0.9 1.2e-64 216.4 0.9 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|330506510|ref|YP_004382938.1| - 2.2e-33 115.0 0.0 3.5e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain OCD_Mu_crystall PF02423.15 gi|330506510|ref|YP_004382938.1| - 0.065 12.2 0.1 0.088 11.7 0.1 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family DUF2121 PF09894.9 gi|330506511|ref|YP_004382939.1| - 2.5e-63 213.2 0.1 3e-63 212.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) NTP_transf_3 PF12804.7 gi|330506512|ref|YP_004382940.1| - 2.1e-28 99.7 0.3 2.9e-28 99.2 0.3 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|330506512|ref|YP_004382940.1| - 1.2e-05 25.4 0.0 2.1e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|330506512|ref|YP_004382940.1| - 0.023 14.4 0.0 0.039 13.7 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase tRNA-synt_1b PF00579.25 gi|330506513|ref|YP_004382941.1| - 8.1e-54 182.9 0.0 9.3e-54 182.7 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|330506513|ref|YP_004382941.1| - 0.094 11.6 0.0 1.3 7.8 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (K) EPSP_synthase PF00275.20 gi|330506514|ref|YP_004382942.1| - 3.9e-110 368.4 0.0 4.7e-110 368.2 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PIN PF01850.21 gi|330506515|ref|YP_004382943.1| - 1.3e-13 51.5 0.1 1.5e-13 51.3 0.1 1.0 1 0 0 1 1 1 1 PIN domain VAPB_antitox PF02697.14 gi|330506516|ref|YP_004382944.1| - 9e-23 80.8 5.3 1e-22 80.7 5.3 1.0 1 0 0 1 1 1 1 Putative antitoxin ADP_PFK_GK PF04587.15 gi|330506517|ref|YP_004382945.1| - 2.9e-80 269.9 0.0 3.6e-80 269.6 0.0 1.1 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region DUF2117 PF09890.9 gi|330506518|ref|YP_004382946.1| - 4.1e-62 209.4 0.2 5.9e-62 208.9 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) DUF2098 PF09871.9 gi|330506519|ref|YP_004382947.1| - 1.8e-27 95.5 1.6 2e-27 95.4 1.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) MerR_1 PF13411.6 gi|330506519|ref|YP_004382947.1| - 0.089 12.9 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 MerR HTH family regulatory protein Zn-ribbon_8 PF09723.10 gi|330506521|ref|YP_004382949.1| - 2.6e-05 24.2 1.4 4e-05 23.7 1.4 1.3 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|330506521|ref|YP_004382949.1| - 0.0021 18.1 0.6 0.0022 18.0 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|330506521|ref|YP_004382949.1| - 0.015 15.3 0.9 0.019 15.0 0.9 1.1 1 0 0 1 1 1 0 Double zinc ribbon TFIIS_C PF01096.18 gi|330506521|ref|YP_004382949.1| - 0.018 14.9 3.2 1 9.3 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-LYAR PF08790.11 gi|330506521|ref|YP_004382949.1| - 0.051 13.5 0.1 0.08 12.9 0.1 1.4 1 0 0 1 1 1 0 LYAR-type C2HC zinc finger FYDLN_acid PF09538.10 gi|330506521|ref|YP_004382949.1| - 0.093 13.4 1.0 0.11 13.2 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Molybdopterin PF00384.22 gi|330506522|ref|YP_004382950.1| - 1.3e-16 60.7 0.0 7.9e-16 58.0 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|330506523|ref|YP_004382951.1| - 4.6e-09 36.3 0.0 6e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain GXGXG PF01493.19 gi|330506524|ref|YP_004382952.1| - 1.4e-07 31.3 21.7 4.9e-06 26.3 12.5 2.6 1 1 1 2 2 2 2 GXGXG motif Amidohydro_3 PF07969.11 gi|330506525|ref|YP_004382953.1| - 6.4e-90 302.9 0.8 7.5e-90 302.7 0.8 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|330506525|ref|YP_004382953.1| - 3.2e-07 30.0 0.1 0.0015 17.9 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family Fer4 PF00037.27 gi|330506526|ref|YP_004382954.1| - 1.7e-47 157.4 83.1 1.6e-09 37.2 2.2 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330506526|ref|YP_004382954.1| - 1.4e-36 124.8 63.1 1.7e-10 41.4 12.3 5.5 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330506526|ref|YP_004382954.1| - 3.1e-34 116.9 56.5 2.4e-09 37.1 3.2 6.3 6 0 0 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330506526|ref|YP_004382954.1| - 3.2e-30 104.8 59.6 2.4e-06 28.4 12.2 7.9 7 1 1 8 8 8 8 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|330506526|ref|YP_004382954.1| - 2e-28 97.2 85.4 2.5e-05 24.1 1.5 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330506526|ref|YP_004382954.1| - 3.2e-28 97.6 65.7 8.9e-09 35.4 5.1 6.3 4 2 2 6 6 6 6 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330506526|ref|YP_004382954.1| - 5.8e-27 93.6 68.1 6.7e-07 29.3 7.5 6.6 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330506526|ref|YP_004382954.1| - 9.8e-23 78.8 83.9 2.5e-06 27.2 2.5 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330506526|ref|YP_004382954.1| - 8.3e-16 58.2 69.4 3.1e-06 27.6 11.8 6.3 3 2 2 6 6 6 5 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330506526|ref|YP_004382954.1| - 4.5e-13 49.5 67.7 0.00026 21.4 8.4 6.8 3 3 3 6 6 6 6 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330506526|ref|YP_004382954.1| - 7.5e-13 47.9 84.7 0.00024 21.4 1.8 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_3 PF12798.7 gi|330506526|ref|YP_004382954.1| - 2.7e-07 31.0 115.5 0.0025 18.6 6.9 8.4 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_15 PF13459.6 gi|330506526|ref|YP_004382954.1| - 1.2e-06 29.2 64.3 0.04 14.6 0.3 8.7 7 3 0 7 7 7 4 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|330506526|ref|YP_004382954.1| - 6.3e-06 26.4 63.7 0.1 12.8 1.5 8.0 3 1 5 8 8 8 5 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330506526|ref|YP_004382954.1| - 1.6e-05 25.3 84.5 0.055 14.0 2.5 8.2 8 0 0 8 8 8 6 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|330506526|ref|YP_004382954.1| - 0.0036 18.1 75.2 0.1 13.5 0.5 8.1 5 2 6 11 11 11 3 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|330506526|ref|YP_004382954.1| - 1.7 8.8 37.1 0.42 10.8 3.7 5.9 4 1 3 7 7 7 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S ThiS PF02597.20 gi|330506527|ref|YP_004382955.1| - 2.1e-05 25.1 0.1 2.4e-05 24.9 0.1 1.1 1 0 0 1 1 1 1 ThiS family Thioredoxin_15 PF18403.1 gi|330506527|ref|YP_004382955.1| - 0.057 13.3 0.0 0.057 13.3 0.0 1.0 1 0 0 1 1 1 0 Thioredoxin-like domain ThiF PF00899.21 gi|330506528|ref|YP_004382956.1| - 1.5e-63 214.4 0.0 1.7e-63 214.2 0.0 1.0 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|330506528|ref|YP_004382956.1| - 0.12 12.4 0.1 0.22 11.6 0.0 1.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.21 gi|330506528|ref|YP_004382956.1| - 0.18 11.5 0.0 6.4 6.4 0.0 2.1 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase T3SS_needle_reg PF09025.10 gi|330506528|ref|YP_004382956.1| - 0.18 11.7 0.0 0.29 11.1 0.0 1.2 1 0 0 1 1 1 0 YopR, type III needle-polymerisation regulator 3HCDH_N PF02737.18 gi|330506528|ref|YP_004382956.1| - 0.21 11.4 0.0 0.31 10.9 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1890 PF09001.11 gi|330506529|ref|YP_004382957.1| - 1.3e-43 148.8 0.1 1.4e-43 148.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) DUF1894 PF08979.11 gi|330506530|ref|YP_004382958.1| - 9.5e-30 102.8 0.1 1.3e-29 102.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) OMPdecase PF00215.24 gi|330506530|ref|YP_004382958.1| - 0.089 12.4 0.0 6.6 6.3 0.0 2.0 2 0 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family ThiS PF02597.20 gi|330506531|ref|YP_004382959.1| - 5.4e-15 55.8 0.0 6.1e-15 55.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family Med10 PF09748.9 gi|330506531|ref|YP_004382959.1| - 0.035 14.1 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex MoaE PF02391.17 gi|330506532|ref|YP_004382960.1| - 4.1e-31 107.6 1.9 4.7e-31 107.4 1.9 1.0 1 0 0 1 1 1 1 MoaE protein Baculo_E25 PF05274.11 gi|330506532|ref|YP_004382960.1| - 0.16 11.8 0.0 0.29 11.0 0.0 1.4 1 1 0 1 1 1 0 Occlusion-derived virus envelope protein E25 CutA1 PF03091.15 gi|330506533|ref|YP_004382961.1| - 1.7e-32 111.2 0.1 1.8e-32 111.1 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein EzrA PF06160.12 gi|330506534|ref|YP_004382962.1| - 0.0025 16.1 0.1 0.0033 15.7 0.1 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Abhydrolase_1 PF00561.20 gi|330506535|ref|YP_004382963.1| - 1.7e-21 77.0 0.1 1.3e-20 74.1 0.1 1.9 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|330506535|ref|YP_004382963.1| - 2.3e-20 74.2 2.5 2.8e-20 73.9 2.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|330506535|ref|YP_004382963.1| - 1.1e-09 37.9 0.0 1.5e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Ser_hydrolase PF06821.13 gi|330506535|ref|YP_004382963.1| - 2.8e-05 24.0 0.0 5.6e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Serine hydrolase Ndr PF03096.14 gi|330506535|ref|YP_004382963.1| - 0.00028 19.7 0.0 0.0006 18.6 0.0 1.5 2 0 0 2 2 2 1 Ndr family Abhydrolase_5 PF12695.7 gi|330506535|ref|YP_004382963.1| - 0.00092 19.0 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF676 PF05057.14 gi|330506535|ref|YP_004382963.1| - 0.0036 16.8 0.0 0.0069 15.9 0.0 1.4 1 0 0 1 1 1 1 Putative serine esterase (DUF676) PGAP1 PF07819.13 gi|330506535|ref|YP_004382963.1| - 0.02 14.6 1.1 5.3 6.7 0.0 2.4 2 1 0 3 3 3 0 PGAP1-like protein Esterase PF00756.20 gi|330506535|ref|YP_004382963.1| - 0.046 13.4 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Lipase_3 PF01764.25 gi|330506535|ref|YP_004382963.1| - 0.058 13.3 0.1 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 Lipase (class 3) Peptidase_S9 PF00326.21 gi|330506535|ref|YP_004382963.1| - 0.15 11.5 0.0 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family LCAT PF02450.15 gi|330506535|ref|YP_004382963.1| - 0.21 10.7 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase F420_oxidored PF03807.17 gi|330506536|ref|YP_004382964.1| - 2.9e-21 75.8 0.1 9.2e-21 74.2 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent P5CR_dimer PF14748.6 gi|330506536|ref|YP_004382964.1| - 1.1e-15 57.7 0.3 2.2e-15 56.7 0.3 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation NAD_binding_2 PF03446.15 gi|330506536|ref|YP_004382964.1| - 2.3e-08 34.4 0.0 4.1e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|330506536|ref|YP_004382964.1| - 2.8e-07 30.7 0.0 1.1e-06 28.8 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|330506536|ref|YP_004382964.1| - 1.7e-05 25.1 0.1 6.9e-05 23.1 0.1 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Rossmann-like PF10727.9 gi|330506536|ref|YP_004382964.1| - 5.8e-05 22.9 0.1 0.00012 22.0 0.1 1.5 1 0 0 1 1 1 1 Rossmann-like domain GFO_IDH_MocA PF01408.22 gi|330506536|ref|YP_004382964.1| - 0.012 16.4 0.0 0.025 15.4 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|330506536|ref|YP_004382964.1| - 0.013 14.9 0.0 0.028 13.8 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PDH PF02153.17 gi|330506536|ref|YP_004382964.1| - 0.059 12.4 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 Prephenate dehydrogenase ApbA PF02558.16 gi|330506536|ref|YP_004382964.1| - 0.063 12.9 0.3 0.29 10.8 0.3 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|330506536|ref|YP_004382964.1| - 0.11 12.4 0.3 2.6 8.0 0.3 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AAA PF00004.29 gi|330506537|ref|YP_004382965.1| - 1.6e-99 329.5 0.0 4.4e-49 166.3 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|330506537|ref|YP_004382965.1| - 2.1e-29 101.5 0.5 1.2e-28 99.0 0.1 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|330506537|ref|YP_004382965.1| - 7.1e-28 96.2 4.0 1.8e-14 53.2 0.4 3.0 2 1 0 2 2 2 2 AAA+ lid domain AAA_2 PF07724.14 gi|330506537|ref|YP_004382965.1| - 1.9e-16 60.6 0.0 1.3e-07 31.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|330506537|ref|YP_004382965.1| - 3.9e-16 59.2 0.0 2.9e-08 33.6 0.0 2.8 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|330506537|ref|YP_004382965.1| - 3.6e-15 56.7 0.0 3.6e-06 27.5 0.0 3.5 2 1 0 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|330506537|ref|YP_004382965.1| - 1.5e-14 54.2 1.1 1.8e-06 28.0 0.2 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|330506537|ref|YP_004382965.1| - 8.9e-13 48.6 0.0 2e-05 24.8 0.0 3.6 3 1 0 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|330506537|ref|YP_004382965.1| - 6.1e-12 46.0 1.4 0.0014 18.9 0.1 4.1 2 2 2 4 4 4 2 AAA domain TIP49 PF06068.13 gi|330506537|ref|YP_004382965.1| - 3.6e-11 42.9 0.0 0.00017 20.9 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain CDC48_2 PF02933.17 gi|330506537|ref|YP_004382965.1| - 1.8e-09 37.2 1.2 6.7e-09 35.4 0.0 2.6 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.6 gi|330506537|ref|YP_004382965.1| - 9.8e-09 35.3 0.0 0.0044 17.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|330506537|ref|YP_004382965.1| - 1.1e-08 35.5 0.0 0.0025 18.2 0.0 2.8 3 0 0 3 3 2 2 RNA helicase Mg_chelatase PF01078.21 gi|330506537|ref|YP_004382965.1| - 1.9e-08 34.0 0.0 0.0045 16.4 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|330506537|ref|YP_004382965.1| - 1.9e-08 34.3 0.0 0.0043 16.8 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|330506537|ref|YP_004382965.1| - 2.3e-08 34.7 0.0 0.0049 17.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|330506537|ref|YP_004382965.1| - 4.9e-08 33.4 0.1 0.0024 18.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|330506537|ref|YP_004382965.1| - 1.5e-07 31.4 0.0 0.019 14.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|330506537|ref|YP_004382965.1| - 2.3e-07 30.7 0.1 0.036 13.8 0.0 3.9 3 1 0 3 3 3 2 Sigma-54 interaction domain TsaE PF02367.17 gi|330506537|ref|YP_004382965.1| - 7.7e-07 29.2 0.0 0.048 13.7 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|330506537|ref|YP_004382965.1| - 9.6e-07 28.9 0.3 0.11 12.4 0.0 3.6 3 1 1 4 4 3 2 NACHT domain AAA_25 PF13481.6 gi|330506537|ref|YP_004382965.1| - 1.2e-06 28.3 7.4 0.31 10.6 0.2 4.4 2 2 0 4 4 4 2 AAA domain AAA_3 PF07726.11 gi|330506537|ref|YP_004382965.1| - 1.7e-06 27.9 0.0 0.043 13.7 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|330506537|ref|YP_004382965.1| - 2.7e-06 27.0 0.0 0.062 12.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region Bac_DnaA PF00308.18 gi|330506537|ref|YP_004382965.1| - 3.5e-06 27.0 0.0 0.074 12.9 0.0 2.6 2 1 0 2 2 2 2 Bacterial dnaA protein ABC_tran PF00005.27 gi|330506537|ref|YP_004382965.1| - 5.1e-06 27.0 0.0 0.14 12.7 0.0 2.7 2 0 0 2 2 2 2 ABC transporter ATPase PF06745.13 gi|330506537|ref|YP_004382965.1| - 5.5e-06 25.9 0.8 0.51 9.6 0.0 3.5 2 1 1 3 3 3 2 KaiC DUF815 PF05673.13 gi|330506537|ref|YP_004382965.1| - 6.6e-06 25.5 0.0 0.034 13.3 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|330506537|ref|YP_004382965.1| - 8.4e-06 25.2 0.0 0.044 13.1 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin TniB PF05621.11 gi|330506537|ref|YP_004382965.1| - 1.8e-05 24.2 0.0 0.3 10.5 0.0 3.7 3 1 1 4 4 4 1 Bacterial TniB protein Parvo_NS1 PF01057.17 gi|330506537|ref|YP_004382965.1| - 2e-05 23.8 0.1 0.19 10.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|330506537|ref|YP_004382965.1| - 2.4e-05 23.9 0.1 0.14 11.6 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_17 PF13207.6 gi|330506537|ref|YP_004382965.1| - 2.8e-05 24.6 0.1 0.46 10.9 0.0 2.9 2 1 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|330506537|ref|YP_004382965.1| - 3.5e-05 23.8 0.0 0.34 10.8 0.0 2.6 2 1 0 2 2 2 2 ATPase domain predominantly from Archaea AAA_11 PF13086.6 gi|330506537|ref|YP_004382965.1| - 0.00014 21.7 0.0 0.43 10.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|330506537|ref|YP_004382965.1| - 0.00016 21.5 0.0 0.58 9.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|330506537|ref|YP_004382965.1| - 0.00017 21.5 0.2 0.36 10.9 0.0 3.1 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain NB-ARC PF00931.22 gi|330506537|ref|YP_004382965.1| - 0.0002 20.6 0.0 0.42 9.7 0.0 2.8 3 0 0 3 3 3 2 NB-ARC domain KAP_NTPase PF07693.14 gi|330506537|ref|YP_004382965.1| - 0.00051 19.4 0.1 3.2 6.9 0.0 3.7 2 2 1 4 4 4 0 KAP family P-loop domain AAA_19 PF13245.6 gi|330506537|ref|YP_004382965.1| - 0.00059 20.2 1.8 1.9 8.8 0.0 3.7 3 1 1 4 4 3 1 AAA domain DUF2075 PF09848.9 gi|330506537|ref|YP_004382965.1| - 0.00084 18.7 0.0 0.52 9.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AFG1_ATPase PF03969.16 gi|330506537|ref|YP_004382965.1| - 0.00085 18.3 0.0 0.3 9.9 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase Sigma54_activ_2 PF14532.6 gi|330506537|ref|YP_004382965.1| - 0.0011 19.1 0.0 0.53 10.4 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain Guanylate_kin PF00625.21 gi|330506537|ref|YP_004382965.1| - 0.0026 17.5 0.1 6.9 6.3 0.0 3.7 2 2 2 4 4 4 0 Guanylate kinase Rad17 PF03215.15 gi|330506537|ref|YP_004382965.1| - 0.0063 16.5 0.1 6.9 6.6 0.0 3.1 2 2 1 3 3 3 0 Rad17 P-loop domain Cytidylate_kin PF02224.18 gi|330506537|ref|YP_004382965.1| - 0.0068 16.2 0.1 3.7 7.2 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase T2SSE PF00437.20 gi|330506537|ref|YP_004382965.1| - 0.014 14.4 0.0 2.9 6.9 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Viral_helicase1 PF01443.18 gi|330506537|ref|YP_004382965.1| - 0.018 14.8 0.0 0.55 9.9 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|330506537|ref|YP_004382965.1| - 0.019 14.9 0.0 5.4 7.0 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit SRPRB PF09439.10 gi|330506537|ref|YP_004382965.1| - 0.025 14.0 0.0 2.9 7.3 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit IPT PF01745.16 gi|330506537|ref|YP_004382965.1| - 0.036 13.4 0.1 8.5 5.7 0.0 2.5 2 0 0 2 2 2 0 Isopentenyl transferase AAA_29 PF13555.6 gi|330506537|ref|YP_004382965.1| - 0.04 13.6 0.0 8.7 6.2 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain PIF1 PF05970.14 gi|330506537|ref|YP_004382965.1| - 0.05 12.8 0.0 7.7 5.6 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase CPT PF07931.12 gi|330506537|ref|YP_004382965.1| - 0.06 13.2 0.0 7.1 6.4 0.0 2.7 2 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein PduV-EutP PF10662.9 gi|330506537|ref|YP_004382965.1| - 0.069 12.9 0.1 11 5.7 0.0 2.6 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation cIII PF08134.11 gi|330506537|ref|YP_004382965.1| - 0.073 12.8 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 cIII protein family Roc PF08477.13 gi|330506537|ref|YP_004382965.1| - 0.074 13.3 0.0 18 5.6 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NTPase_1 PF03266.15 gi|330506537|ref|YP_004382965.1| - 0.086 12.7 5.9 3.7 7.4 0.1 4.4 3 2 1 4 4 4 0 NTPase DAP3 PF10236.9 gi|330506537|ref|YP_004382965.1| - 0.14 11.3 0.0 5.1 6.2 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 PPV_E1_C PF00519.17 gi|330506537|ref|YP_004382965.1| - 0.22 10.3 0.0 6.7 5.4 0.0 2.1 2 0 0 2 2 2 0 Papillomavirus helicase HhH-GPD PF00730.25 gi|330506538|ref|YP_004382966.1| - 0.067 13.7 0.1 0.11 13.0 0.1 1.4 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein Mrr_cat_2 PF13156.6 gi|330506539|ref|YP_004382967.1| - 0.072 13.0 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease Nmad3 PF18754.1 gi|330506540|ref|YP_004382968.1| - 9.7e-52 176.0 0.3 1.1e-51 175.8 0.3 1.0 1 0 0 1 1 1 1 Nucleotide modification associated domain 3 DDE_Tnp_1 PF01609.21 gi|330506541|ref|YP_004382969.1| - 3.9e-09 36.5 1.8 8.4e-09 35.4 1.8 1.5 1 1 0 1 1 1 1 Transposase DDE domain MADF_DNA_bdg PF10545.9 gi|330506541|ref|YP_004382969.1| - 0.11 12.8 0.4 1 9.7 0.4 2.6 2 0 0 2 2 2 0 Alcohol dehydrogenase transcription factor Myb/SANT-like Glyoxalase PF00903.25 gi|330506542|ref|YP_004382970.1| - 4.2e-15 56.1 0.0 4.7e-15 55.9 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|330506542|ref|YP_004382970.1| - 5e-07 30.0 0.0 4.2e-05 23.8 0.0 1.5 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|330506542|ref|YP_004382970.1| - 0.00043 21.0 0.0 0.00064 20.5 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|330506542|ref|YP_004382970.1| - 0.0036 17.2 0.2 0.011 15.7 0.2 1.7 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_5 PF14696.6 gi|330506542|ref|YP_004382970.1| - 0.041 14.1 0.0 0.05 13.8 0.0 1.2 1 0 0 1 1 1 0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 3-dmu-9_3-mt PF06983.13 gi|330506542|ref|YP_004382970.1| - 0.13 12.8 0.2 10 6.7 0.0 2.1 2 0 0 2 2 2 0 3-demethylubiquinone-9 3-methyltransferase S-layer PF07752.11 gi|330506543|ref|YP_004382971.1| - 2.1e-53 181.0 2.1 3.3e-24 85.3 0.3 3.0 1 1 2 3 3 3 3 S-layer protein CBM60 PF16841.5 gi|330506543|ref|YP_004382971.1| - 0.00038 20.8 0.9 10 6.6 0.0 4.0 3 2 0 3 3 3 2 Ca-dependent carbohydrate-binding module xylan-binding NPM1-C PF16276.5 gi|330506543|ref|YP_004382971.1| - 0.0063 16.5 0.0 11 6.1 0.0 3.1 3 0 0 3 3 3 2 Nucleophosmin C-terminal domain TIMP PF00965.17 gi|330506543|ref|YP_004382971.1| - 0.009 15.8 0.0 1.1 9.1 0.1 2.5 2 1 1 3 3 3 2 Tissue inhibitor of metalloproteinase PDDEXK_7 PF04411.12 gi|330506543|ref|YP_004382971.1| - 0.028 14.4 0.0 34 4.4 0.0 3.1 3 0 0 3 3 3 0 PD-(D/E)XK nuclease superfamily dUTPase PF00692.19 gi|330506544|ref|YP_004382972.1| - 1.9e-07 30.8 0.0 2.3e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase CPBP PF02517.16 gi|330506545|ref|YP_004382973.1| - 4.8e-11 42.9 7.0 4.8e-11 42.9 7.0 2.1 3 0 0 3 3 3 1 CPBP intramembrane metalloprotease PsbX PF06596.11 gi|330506545|ref|YP_004382973.1| - 0.034 14.2 0.6 0.034 14.2 0.6 3.2 3 0 0 3 3 3 0 Photosystem II reaction centre X protein (PsbX) DUF2070 PF09843.9 gi|330506545|ref|YP_004382973.1| - 2.8 6.1 10.6 0.51 8.6 7.2 1.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) Glycos_transf_4 PF00953.21 gi|330506546|ref|YP_004382974.1| - 0.041 13.8 0.1 0.27 11.2 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase family 4 Peptidase_C11 PF03415.14 gi|330506547|ref|YP_004382975.1| - 2.4e-24 86.5 0.0 1.4e-17 64.2 0.0 2.0 2 0 0 2 2 2 2 Clostripain family DDE_Tnp_IS66 PF03050.14 gi|330506548|ref|YP_004382976.1| - 1.6e-06 27.8 0.6 2.7e-05 23.8 0.6 2.1 1 1 0 1 1 1 1 Transposase IS66 family Zn_ribbon_recom PF13408.6 gi|330506548|ref|YP_004382976.1| - 0.14 12.7 4.6 0.18 12.3 2.2 2.4 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|330506548|ref|YP_004382976.1| - 0.15 12.2 0.7 7.5 6.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|330506548|ref|YP_004382976.1| - 0.21 11.2 0.6 12 5.6 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|330506548|ref|YP_004382976.1| - 0.27 11.3 2.8 1.3 9.1 3.1 1.9 1 1 1 2 2 2 0 Double zinc ribbon YhfH PF14149.6 gi|330506548|ref|YP_004382976.1| - 0.66 10.0 2.5 7.3 6.7 0.3 2.6 2 0 0 2 2 2 0 YhfH-like protein TF_Zn_Ribbon PF08271.12 gi|330506548|ref|YP_004382976.1| - 6.2 6.4 5.5 77 2.9 5.5 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding Glyoxalase PF00903.25 gi|330506550|ref|YP_004382978.1| - 1.5e-05 25.2 0.0 4.8e-05 23.6 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|330506550|ref|YP_004382978.1| - 0.00042 21.1 0.0 0.00073 20.3 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain Transposase_20 PF02371.16 gi|330506550|ref|YP_004382978.1| - 0.1 12.9 0.0 0.3 11.4 0.0 1.7 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family TPR_1 PF00515.28 gi|330506551|ref|YP_004382979.1| - 1.5e-63 208.2 8.3 1.5e-11 43.6 0.2 7.0 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330506551|ref|YP_004382979.1| - 5e-58 188.6 15.2 3.4e-10 39.3 0.6 7.0 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330506551|ref|YP_004382979.1| - 1.6e-54 181.3 15.3 2.5e-13 49.4 0.1 6.4 2 2 4 6 6 6 6 TPR repeat TPR_8 PF13181.6 gi|330506551|ref|YP_004382979.1| - 6.4e-44 144.5 8.8 1.2e-06 28.3 0.1 7.2 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330506551|ref|YP_004382979.1| - 4.2e-43 145.7 19.5 2.2e-13 50.6 0.1 4.2 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330506551|ref|YP_004382979.1| - 3e-34 114.9 2.8 8.3e-06 25.8 0.1 7.1 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330506551|ref|YP_004382979.1| - 3.7e-32 110.6 9.7 3.3e-10 40.3 0.1 4.1 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330506551|ref|YP_004382979.1| - 4e-32 108.2 23.0 1.9e-07 31.3 0.1 7.0 1 1 6 7 7 7 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330506551|ref|YP_004382979.1| - 3.4e-26 91.3 34.9 1.3e-07 31.7 0.5 6.0 1 1 5 6 6 6 6 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330506551|ref|YP_004382979.1| - 1.3e-22 79.8 1.0 5.8e-07 29.6 0.0 3.7 2 1 2 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|330506551|ref|YP_004382979.1| - 2.3e-21 75.7 17.4 1.2e-06 28.6 3.4 4.7 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330506551|ref|YP_004382979.1| - 2.2e-20 71.1 16.0 0.0007 19.4 0.1 7.3 6 1 1 7 7 7 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330506551|ref|YP_004382979.1| - 1.3e-19 69.4 11.6 0.18 12.5 0.0 7.2 7 0 0 7 7 7 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330506551|ref|YP_004382979.1| - 3.5e-14 52.6 0.1 0.34 11.0 0.0 6.2 5 1 1 6 6 6 3 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|330506551|ref|YP_004382979.1| - 1.5e-13 50.1 27.0 0.095 12.6 0.2 7.4 7 1 0 7 7 7 6 Tetratricopeptide repeat TPR_3 PF07720.12 gi|330506551|ref|YP_004382979.1| - 1e-11 44.6 5.1 0.022 14.7 0.0 5.6 6 0 0 6 6 5 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|330506551|ref|YP_004382979.1| - 4e-11 42.5 0.4 0.00012 21.2 0.0 3.6 2 1 3 5 5 5 3 NMDA receptor-regulated protein 1 TPR_4 PF07721.14 gi|330506551|ref|YP_004382979.1| - 1.2e-10 40.9 15.6 0.8 10.5 0.6 7.5 7 1 1 8 8 7 2 Tetratricopeptide repeat BTAD PF03704.17 gi|330506551|ref|YP_004382979.1| - 1e-09 39.0 6.7 4.5e-05 23.9 0.2 3.2 1 1 0 2 2 2 2 Bacterial transcriptional activator domain ANAPC5 PF12862.7 gi|330506551|ref|YP_004382979.1| - 2.2e-09 37.3 0.7 2 8.5 0.1 6.0 3 1 3 6 6 6 1 Anaphase-promoting complex subunit 5 TPR_15 PF13429.6 gi|330506551|ref|YP_004382979.1| - 5.3e-08 32.4 6.5 0.0068 15.6 1.6 3.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_21 PF09976.9 gi|330506551|ref|YP_004382979.1| - 7.2e-08 32.4 10.8 0.054 13.2 3.5 4.3 1 1 4 5 5 5 3 Tetratricopeptide repeat-like domain DUF5113 PF17140.4 gi|330506551|ref|YP_004382979.1| - 1.4e-07 31.5 0.2 3.3 7.5 0.0 5.4 5 1 1 6 6 6 1 Domain of unknown function (DUF5113) SRP_TPR_like PF17004.5 gi|330506551|ref|YP_004382979.1| - 7.7e-07 29.1 0.0 0.0012 18.8 0.0 3.2 2 1 0 2 2 2 1 Putative TPR-like repeat Alkyl_sulf_dimr PF14863.6 gi|330506551|ref|YP_004382979.1| - 8.2e-07 29.6 0.2 1.6 9.2 0.0 4.0 2 2 2 4 4 4 2 Alkyl sulfatase dimerisation DUF3856 PF12968.7 gi|330506551|ref|YP_004382979.1| - 8.4e-07 29.2 7.3 0.2 11.7 0.3 6.1 1 1 3 5 5 5 1 Domain of Unknown Function (DUF3856) HrpB1_HrpK PF09613.10 gi|330506551|ref|YP_004382979.1| - 1.9e-06 27.5 0.1 0.044 13.4 0.0 2.8 1 1 2 3 3 3 2 Bacterial type III secretion protein (HrpB1_HrpK) DUF1510 PF07423.11 gi|330506551|ref|YP_004382979.1| - 2.2e-06 27.7 1.5 2.1 8.6 0.0 5.0 2 1 4 6 6 6 1 Domain of unknown function (DUF1510) TPR_20 PF14561.6 gi|330506551|ref|YP_004382979.1| - 1.3e-05 25.5 6.4 0.45 10.9 0.1 4.5 3 2 2 5 5 5 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|330506551|ref|YP_004382979.1| - 0.00037 20.0 3.5 0.021 14.2 0.9 3.4 1 1 1 3 3 3 1 MalT-like TPR region PPR PF01535.20 gi|330506551|ref|YP_004382979.1| - 0.0021 18.2 0.1 25 5.4 0.0 5.0 6 0 0 6 6 4 0 PPR repeat Mo-co_dimer PF03404.16 gi|330506551|ref|YP_004382979.1| - 0.0039 17.2 0.0 11 6.0 0.0 3.7 1 1 3 4 4 4 0 Mo-co oxidoreductase dimerisation domain HTH_Bact PF18768.1 gi|330506551|ref|YP_004382979.1| - 0.0064 16.0 5.8 6.8 6.4 0.1 5.3 4 2 0 4 4 4 0 Helix-turn-helix bacterial domain MIT PF04212.18 gi|330506551|ref|YP_004382979.1| - 0.0071 16.4 13.3 0.3 11.2 0.9 6.2 5 3 2 7 7 7 1 MIT (microtubule interacting and transport) domain NRBF2_MIT PF17169.4 gi|330506551|ref|YP_004382979.1| - 0.016 15.4 0.7 49 4.2 0.0 4.8 6 0 0 6 6 5 0 MIT domain of nuclear receptor-binding factor 2 FAT PF02259.23 gi|330506551|ref|YP_004382979.1| - 0.017 14.4 0.9 10 5.2 0.1 3.3 2 2 1 3 3 3 0 FAT domain DUF1347 PF07079.11 gi|330506551|ref|YP_004382979.1| - 0.02 13.5 0.5 0.22 10.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1347) DUF357 PF04010.13 gi|330506551|ref|YP_004382979.1| - 0.023 14.8 1.9 0.14 12.3 0.0 2.8 3 0 0 3 3 2 0 Protein of unknown function (DUF357) Clathrin_H_link PF13838.6 gi|330506551|ref|YP_004382979.1| - 0.031 14.2 1.6 4.7 7.2 0.0 3.7 4 0 0 4 4 3 0 Clathrin-H-link MAS20 PF02064.15 gi|330506551|ref|YP_004382979.1| - 0.039 14.1 0.3 10 6.3 0.0 4.3 5 1 1 6 6 5 0 MAS20 protein import receptor YfiO PF13525.6 gi|330506551|ref|YP_004382979.1| - 0.04 13.6 2.3 3.3 7.4 0.1 3.5 3 2 0 3 3 3 0 Outer membrane lipoprotein TPR_18 PF13512.6 gi|330506551|ref|YP_004382979.1| - 0.049 13.7 0.1 11 6.1 0.0 3.3 2 2 0 2 2 2 0 Tetratricopeptide repeat DUF627 PF04781.12 gi|330506551|ref|YP_004382979.1| - 0.055 13.5 0.0 8.9 6.4 0.0 3.3 3 2 1 4 4 3 0 Protein of unknown function (DUF627) Wzy_C_2 PF11846.8 gi|330506551|ref|YP_004382979.1| - 0.15 12.0 4.8 6 6.7 0.1 3.9 1 1 1 4 4 4 0 Virulence factor membrane-bound polymerase, C-terminal PPR_2 PF13041.6 gi|330506551|ref|YP_004382979.1| - 0.19 12.0 0.1 74 3.7 0.0 3.5 4 0 0 4 4 3 0 PPR repeat family DUF4398 PF14346.6 gi|330506551|ref|YP_004382979.1| - 0.19 12.4 0.4 0.19 12.4 0.4 4.3 3 3 2 5 5 4 0 Domain of unknown function (DUF4398) RPN7 PF10602.9 gi|330506551|ref|YP_004382979.1| - 0.22 11.2 3.5 19 4.9 0.0 4.0 4 2 1 5 5 4 0 26S proteasome subunit RPN7 EzrA PF06160.12 gi|330506551|ref|YP_004382979.1| - 0.24 9.5 1.5 13 3.8 0.0 3.0 2 1 1 3 3 3 0 Septation ring formation regulator, EzrA HEPN PF05168.14 gi|330506551|ref|YP_004382979.1| - 2.3 8.4 9.3 2.2 8.4 0.2 4.0 5 1 0 5 5 4 0 HEPN domain PemK_toxin PF02452.17 gi|330506552|ref|YP_004382980.1| - 0.0039 17.6 0.0 0.0043 17.4 0.0 1.1 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system NosD PF05048.13 gi|330506553|ref|YP_004382981.1| - 4.2e-52 176.8 51.6 6.1e-49 166.5 36.8 2.0 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|330506553|ref|YP_004382981.1| - 1.5e-25 89.9 45.3 2.6e-19 69.6 22.5 2.2 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|330506553|ref|YP_004382981.1| - 0.00079 19.3 18.0 0.11 12.3 5.0 3.2 2 1 1 3 3 3 3 Pectate lyase superfamily protein PGM_PMM_I PF02878.16 gi|330506553|ref|YP_004382981.1| - 0.46 10.2 2.7 8.8 6.0 0.4 2.6 2 1 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Acetyltransf_1 PF00583.25 gi|330506554|ref|YP_004382982.1| - 5.1e-13 49.3 0.1 6.3e-13 49.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|330506554|ref|YP_004382982.1| - 2.2e-10 40.8 0.0 4.4e-10 39.8 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|330506554|ref|YP_004382982.1| - 8.8e-10 38.6 0.0 1e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|330506554|ref|YP_004382982.1| - 0.00054 20.0 0.0 0.006 16.7 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330506554|ref|YP_004382982.1| - 0.00077 19.4 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|330506554|ref|YP_004382982.1| - 0.0022 18.1 0.0 0.0044 17.1 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|330506554|ref|YP_004382982.1| - 0.0028 17.4 0.0 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_1 PF00583.25 gi|330506555|ref|YP_004382983.1| - 1.5e-14 54.2 0.1 2e-14 53.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|330506555|ref|YP_004382983.1| - 7.4e-13 48.5 0.0 9.1e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|330506555|ref|YP_004382983.1| - 1.3e-10 41.5 0.0 2.7e-10 40.5 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|330506555|ref|YP_004382983.1| - 1.1e-05 25.5 0.0 0.00015 21.8 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330506555|ref|YP_004382983.1| - 0.00016 21.5 0.0 0.00026 20.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein PanZ PF12568.8 gi|330506555|ref|YP_004382983.1| - 0.00027 20.6 0.0 0.00034 20.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|330506555|ref|YP_004382983.1| - 0.0017 18.4 0.0 0.0032 17.6 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Alpha-amylase PF00128.24 gi|330506556|ref|YP_004382984.1| - 5.2e-27 95.3 0.9 3.6e-17 62.9 0.1 2.9 1 1 0 2 2 2 2 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.18 gi|330506556|ref|YP_004382984.1| - 0.0066 16.9 0.0 0.018 15.5 0.0 1.7 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain Malt_amylase_C PF16657.5 gi|330506556|ref|YP_004382984.1| - 0.05 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain DUF1638 PF07796.11 gi|330506557|ref|YP_004382985.1| - 4.7e-32 111.3 0.0 5.7e-32 111.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) MukE PF04288.13 gi|330506557|ref|YP_004382985.1| - 0.03 13.3 0.0 0.053 12.5 0.0 1.3 1 0 0 1 1 1 0 MukE-like family Thioredoxin PF00085.20 gi|330506558|ref|YP_004382986.1| - 2.8e-26 91.5 0.0 3.9e-26 91.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|330506558|ref|YP_004382986.1| - 7.2e-06 26.4 0.0 8.9e-05 22.9 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|330506558|ref|YP_004382986.1| - 8.3e-05 22.8 0.0 0.088 13.2 0.0 2.4 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|330506558|ref|YP_004382986.1| - 0.00015 21.6 0.0 0.00017 21.3 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|330506558|ref|YP_004382986.1| - 0.00037 19.9 0.0 0.00045 19.7 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family KaiB PF07689.12 gi|330506558|ref|YP_004382986.1| - 0.0057 16.4 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 KaiB domain Phosducin PF02114.16 gi|330506558|ref|YP_004382986.1| - 0.0093 14.9 0.0 0.01 14.8 0.0 1.3 1 1 0 1 1 1 1 Phosducin HyaE PF07449.11 gi|330506558|ref|YP_004382986.1| - 0.011 15.7 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.6 gi|330506558|ref|YP_004382986.1| - 0.012 15.8 0.0 0.025 14.8 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like Thioredoxin_6 PF13848.6 gi|330506558|ref|YP_004382986.1| - 0.026 14.4 0.0 0.038 13.9 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain AhpC-TSA PF00578.21 gi|330506558|ref|YP_004382986.1| - 0.14 12.1 0.0 0.24 11.3 0.0 1.6 1 1 0 1 1 1 0 AhpC/TSA family Wzt_C PF14524.6 gi|330506560|ref|YP_004382988.1| - 0.0042 17.1 0.0 0.1 12.6 0.0 2.6 3 0 0 3 3 3 1 Wzt C-terminal domain BsuPI PF12690.7 gi|330506560|ref|YP_004382988.1| - 0.021 14.8 0.0 1.3 9.1 0.0 2.4 2 0 0 2 2 2 0 Intracellular proteinase inhibitor CopC PF04234.12 gi|330506560|ref|YP_004382988.1| - 0.041 14.9 0.0 20 6.3 0.0 2.5 2 1 0 2 2 2 0 CopC domain Peptidase_M50 PF02163.22 gi|330506561|ref|YP_004382989.1| - 4.1e-22 78.7 0.0 1e-21 77.4 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|330506561|ref|YP_004382989.1| - 3.5e-11 43.3 0.0 1.1e-06 28.9 0.0 2.3 1 1 1 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|330506561|ref|YP_004382989.1| - 5.6e-10 38.9 0.1 0.001 18.8 0.0 2.4 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 gi|330506561|ref|YP_004382989.1| - 2.1e-05 24.8 0.6 0.0045 17.3 0.1 2.6 1 1 1 2 2 2 2 PDZ domain DUF3267 PF11667.8 gi|330506561|ref|YP_004382989.1| - 4.9 7.5 13.5 2.2 8.6 1.3 3.5 3 1 0 3 3 3 0 Putative zincin peptidase KH_1 PF00013.29 gi|330506562|ref|YP_004382990.1| - 4.3e-12 45.7 1.9 1.2e-05 25.0 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|330506562|ref|YP_004382990.1| - 0.00047 20.2 0.0 0.00079 19.5 0.0 1.4 1 0 0 1 1 1 1 Krr1 KH1 domain KH_2 PF07650.17 gi|330506562|ref|YP_004382990.1| - 0.0027 17.5 1.7 0.56 10.1 0.0 2.5 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|330506562|ref|YP_004382990.1| - 0.14 12.2 0.1 2.5 8.3 0.1 2.4 2 0 0 2 2 2 0 NusA-like KH domain RIO1 PF01163.22 gi|330506563|ref|YP_004382991.1| - 4.5e-61 205.7 0.0 6.4e-61 205.2 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|330506563|ref|YP_004382991.1| - 0.00011 21.6 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|330506563|ref|YP_004382991.1| - 0.0012 18.9 0.0 0.0036 17.3 0.0 1.7 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.14 gi|330506563|ref|YP_004382991.1| - 0.0019 17.6 0.0 0.015 14.6 0.0 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family UvsW PF11637.8 gi|330506563|ref|YP_004382991.1| - 0.015 15.4 0.3 0.052 13.6 0.3 2.0 1 0 0 1 1 1 0 ATP-dependant DNA helicase UvsW DUF759 PF05537.11 gi|330506563|ref|YP_004382991.1| - 0.08 11.8 0.1 0.14 11.0 0.1 1.4 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) eIF-1a PF01176.19 gi|330506564|ref|YP_004382992.1| - 5.6e-13 48.5 1.9 6.7e-13 48.2 1.9 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Prenyltransf PF01255.19 gi|330506565|ref|YP_004382993.1| - 1.1e-65 221.3 0.0 1.4e-65 221.0 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Mg_chelatase_C PF13335.6 gi|330506565|ref|YP_004382993.1| - 0.065 13.9 0.2 0.13 12.9 0.2 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal UBM PF14377.6 gi|330506565|ref|YP_004382993.1| - 0.38 10.3 1.6 0.75 9.3 1.6 1.5 1 0 0 1 1 1 0 Ubiquitin binding region SurE PF01975.17 gi|330506566|ref|YP_004382994.1| - 2.8e-53 180.6 0.2 3.3e-53 180.4 0.2 1.0 1 0 0 1 1 1 1 Survival protein SurE IGPD PF00475.18 gi|330506567|ref|YP_004382995.1| - 6.5e-40 136.8 0.0 8.7e-40 136.3 0.0 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|330506568|ref|YP_004382996.1| - 2.5e-71 239.8 2.2 2.8e-71 239.6 2.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|330506568|ref|YP_004382996.1| - 7.6e-09 35.1 0.4 0.00042 19.5 0.0 2.1 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|330506568|ref|YP_004382996.1| - 1.7e-06 27.4 1.1 0.00026 20.3 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase NMO PF03060.15 gi|330506568|ref|YP_004382996.1| - 2.9e-06 26.9 7.0 0.00026 20.5 2.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|330506568|ref|YP_004382996.1| - 6.8e-06 25.6 2.4 0.00075 18.9 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.17 gi|330506568|ref|YP_004382996.1| - 1.5e-05 24.6 1.0 1.8e-05 24.3 0.1 1.5 2 0 0 2 2 2 1 PcrB family TMP-TENI PF02581.17 gi|330506568|ref|YP_004382996.1| - 3.6e-05 23.2 1.2 0.005 16.2 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase IGPS PF00218.21 gi|330506568|ref|YP_004382996.1| - 0.0023 17.2 0.1 0.77 8.9 0.0 2.3 2 0 0 2 2 2 2 Indole-3-glycerol phosphate synthase G3P_antiterm PF04309.12 gi|330506568|ref|YP_004382996.1| - 0.0032 16.9 0.8 1.7 8.0 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator NanE PF04131.14 gi|330506568|ref|YP_004382996.1| - 0.013 14.7 0.4 0.17 11.1 0.0 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 gi|330506568|ref|YP_004382996.1| - 0.039 12.9 5.8 0.083 11.9 2.6 1.9 1 1 1 2 2 2 0 IMP dehydrogenase / GMP reductase domain DeoC PF01791.9 gi|330506568|ref|YP_004382996.1| - 0.074 12.7 1.2 0.19 11.3 0.3 2.0 2 1 1 3 3 3 0 DeoC/LacD family aldolase Ribul_P_3_epim PF00834.19 gi|330506568|ref|YP_004382996.1| - 0.11 11.9 2.3 4.4 6.6 0.1 2.3 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.18 gi|330506568|ref|YP_004382996.1| - 0.36 9.8 7.6 0.93 8.4 0.5 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase PspA_IM30 PF04012.12 gi|330506569|ref|YP_004382997.1| - 1.5e-23 83.6 32.0 1.6e-23 83.4 32.0 1.0 1 0 0 1 1 1 1 PspA/IM30 family COG5 PF10392.9 gi|330506569|ref|YP_004382997.1| - 0.003 17.7 7.7 0.003 17.7 7.7 2.4 1 1 1 2 2 2 1 Golgi transport complex subunit 5 Baculo_PEP_C PF04513.12 gi|330506569|ref|YP_004382997.1| - 0.0074 16.3 4.8 0.0074 16.3 4.8 2.7 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF5082 PF16888.5 gi|330506569|ref|YP_004382997.1| - 0.012 15.9 5.9 0.012 15.9 5.9 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) Flagellin_C PF00700.21 gi|330506569|ref|YP_004382997.1| - 0.018 15.4 13.7 0.21 12.0 0.1 3.9 2 1 2 4 4 4 0 Bacterial flagellin C-terminal helical region GCN5L1 PF06320.13 gi|330506569|ref|YP_004382997.1| - 0.02 15.0 20.1 0.1 12.7 2.0 3.1 1 1 1 3 3 3 0 GCN5-like protein 1 (GCN5L1) DUF1664 PF07889.12 gi|330506569|ref|YP_004382997.1| - 0.067 13.2 17.4 0.23 11.5 5.0 3.2 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) DUF1910 PF08928.10 gi|330506569|ref|YP_004382997.1| - 0.24 11.4 6.0 0.15 12.1 0.6 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF1910) Filament PF00038.21 gi|330506569|ref|YP_004382997.1| - 0.25 10.9 26.1 0.91 9.0 4.7 3.0 1 1 1 2 2 2 0 Intermediate filament protein Spc7 PF08317.11 gi|330506569|ref|YP_004382997.1| - 0.49 9.2 26.3 0.065 12.1 19.6 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF1501 PF07394.12 gi|330506569|ref|YP_004382997.1| - 0.58 9.1 9.4 2.7 7.0 9.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1501) DUF4407 PF14362.6 gi|330506569|ref|YP_004382997.1| - 0.96 8.7 22.4 2 7.7 21.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) YabA PF06156.13 gi|330506569|ref|YP_004382997.1| - 1.3 9.7 17.7 3.8 8.2 2.8 3.1 1 1 2 3 3 3 0 Initiation control protein YabA Sec20 PF03908.13 gi|330506569|ref|YP_004382997.1| - 1.5 8.7 9.8 2.9 7.9 2.7 2.8 1 1 2 3 3 3 0 Sec20 Prominin PF05478.11 gi|330506569|ref|YP_004382997.1| - 2.1 6.2 12.1 2.5 5.9 11.5 1.5 1 1 0 1 1 1 0 Prominin V_ATPase_I PF01496.19 gi|330506569|ref|YP_004382997.1| - 2.9 5.7 16.0 5.6 4.8 11.2 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF1640 PF07798.11 gi|330506569|ref|YP_004382997.1| - 2.9 7.9 21.9 4 7.5 16.7 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) EMP24_GP25L PF01105.24 gi|330506569|ref|YP_004382997.1| - 4.7 7.1 9.4 4.3 7.2 4.7 2.5 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF4839 PF16127.5 gi|330506570|ref|YP_004382998.1| - 0.029 14.5 0.0 0.036 14.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4839) Cation_efflux PF01545.21 gi|330506571|ref|YP_004382999.1| - 3.9e-45 154.0 14.7 4.8e-45 153.7 14.7 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|330506571|ref|YP_004382999.1| - 0.00067 19.7 1.8 0.0012 18.9 1.8 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF3180 PF11377.8 gi|330506571|ref|YP_004382999.1| - 0.73 10.0 7.5 0.19 11.9 0.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3180) GSDH PF07995.11 gi|330506572|ref|YP_004383000.1| - 5.9e-43 147.4 0.0 7.9e-43 147.0 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Reg_prop PF07494.11 gi|330506572|ref|YP_004383000.1| - 0.077 13.3 0.0 58 4.4 0.0 4.3 4 0 0 4 4 4 0 Two component regulator propeller NHL PF01436.21 gi|330506572|ref|YP_004383000.1| - 0.093 12.8 0.0 0.093 12.8 0.0 3.0 3 0 0 3 3 3 0 NHL repeat NAD_binding_8 PF13450.6 gi|330506573|ref|YP_004383001.1| - 7.6e-18 64.5 0.0 1.4e-17 63.7 0.0 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|330506573|ref|YP_004383001.1| - 1.4e-17 64.1 0.0 3.5e-17 62.8 0.0 1.6 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 gi|330506573|ref|YP_004383001.1| - 6.3e-10 38.7 0.4 2.7e-07 30.0 0.5 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|330506573|ref|YP_004383001.1| - 5.2e-09 36.1 0.4 2.5e-07 30.6 0.5 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|330506573|ref|YP_004383001.1| - 3.8e-08 33.1 0.0 1.2e-07 31.4 0.1 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|330506573|ref|YP_004383001.1| - 5.6e-07 28.6 0.1 9.6e-05 21.3 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.14 gi|330506573|ref|YP_004383001.1| - 3.4e-06 26.5 0.0 0.0003 20.1 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330506573|ref|YP_004383001.1| - 4e-05 24.1 1.1 0.0032 18.0 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|330506573|ref|YP_004383001.1| - 5.5e-05 22.6 0.1 0.00011 21.5 0.1 1.4 2 0 0 2 2 2 1 FAD binding domain GDI PF00996.18 gi|330506573|ref|YP_004383001.1| - 5.9e-05 21.8 1.1 0.018 13.6 0.3 2.1 2 0 0 2 2 2 2 GDP dissociation inhibitor Thi4 PF01946.17 gi|330506573|ref|YP_004383001.1| - 0.00012 21.4 0.2 0.00021 20.6 0.2 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|330506573|ref|YP_004383001.1| - 0.00041 19.7 0.1 0.012 14.9 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|330506573|ref|YP_004383001.1| - 0.0044 16.2 0.1 0.0094 15.1 0.1 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A MCRA PF06100.11 gi|330506573|ref|YP_004383001.1| - 0.098 11.4 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 MCRA family Trp_halogenase PF04820.14 gi|330506573|ref|YP_004383001.1| - 0.099 11.5 0.2 0.15 10.9 0.2 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|330506573|ref|YP_004383001.1| - 0.13 11.3 0.2 0.19 10.7 0.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|330506573|ref|YP_004383001.1| - 0.18 11.8 0.0 1.5 8.8 0.0 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding Glu-tRNAGln PF02686.15 gi|330506574|ref|YP_004383002.1| - 1.2e-21 76.8 0.5 3.2e-21 75.4 0.5 1.6 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit YjbR PF04237.13 gi|330506574|ref|YP_004383002.1| - 0.061 13.9 0.0 0.072 13.7 0.0 1.3 1 0 0 1 1 1 0 YjbR zf-C2H2_9 PF16293.5 gi|330506574|ref|YP_004383002.1| - 0.19 11.6 0.2 0.29 11.0 0.2 1.4 1 0 0 1 1 1 0 C2H2 type zinc-finger (1 copy) Amidase PF01425.21 gi|330506575|ref|YP_004383003.1| - 4e-152 507.3 0.0 4.6e-152 507.1 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.15 gi|330506576|ref|YP_004383004.1| - 3e-101 338.4 0.0 4.2e-101 337.9 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|330506576|ref|YP_004383004.1| - 2.3e-39 134.7 0.0 3.6e-39 134.0 0.0 1.2 1 0 0 1 1 1 1 GatB domain L_lactis_RepB_C PF06430.12 gi|330506576|ref|YP_004383004.1| - 0.073 13.1 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Lactococcus lactis RepB C-terminus YqeY PF09424.10 gi|330506576|ref|YP_004383004.1| - 0.12 12.5 0.1 0.21 11.7 0.1 1.4 1 0 0 1 1 1 0 Yqey-like protein baeRF_family10 PF18854.1 gi|330506577|ref|YP_004383005.1| - 3.3e-22 79.3 0.0 7.2e-22 78.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_2 PF03464.15 gi|330506577|ref|YP_004383005.1| - 3.2e-17 63.1 0.0 1.5e-16 61.0 0.0 2.0 1 1 1 2 2 2 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|330506577|ref|YP_004383005.1| - 1.8e-13 50.9 0.0 3.4e-13 50.0 0.0 1.5 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_3 PF03465.15 gi|330506577|ref|YP_004383005.1| - 6.4e-11 42.7 0.0 1.7e-10 41.3 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 3 baeRF_family2 PF18844.1 gi|330506577|ref|YP_004383005.1| - 4e-06 26.9 0.0 1.1e-05 25.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 2 baeRF_family12 PF18856.1 gi|330506577|ref|YP_004383005.1| - 0.0012 19.5 0.0 0.009 16.6 0.0 2.3 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 DUF1525 PF07511.11 gi|330506577|ref|YP_004383005.1| - 0.021 15.0 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) Zn-ribbon_8 PF09723.10 gi|330506577|ref|YP_004383005.1| - 0.048 13.8 1.3 0.11 12.7 1.3 1.6 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|330506577|ref|YP_004383005.1| - 0.1 12.6 0.1 0.2 11.7 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Host_attach PF10116.9 gi|330506577|ref|YP_004383005.1| - 0.15 12.6 0.0 0.35 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein required for attachment to host cells AAL_decarboxy PF03306.13 gi|330506578|ref|YP_004383006.1| - 2.4e-87 291.9 0.0 2.8e-87 291.7 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase PapD_C PF02753.17 gi|330506578|ref|YP_004383006.1| - 0.097 13.0 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 Pili assembly chaperone PapD, C-terminal domain DJ-1_PfpI PF01965.24 gi|330506579|ref|YP_004383007.1| - 3.4e-36 124.6 0.1 4.4e-36 124.2 0.1 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family Rubredoxin PF00301.20 gi|330506579|ref|YP_004383007.1| - 9.9e-09 35.1 7.1 9.9e-09 35.1 7.1 3.6 3 1 0 3 3 3 1 Rubredoxin PHD_4 PF16866.5 gi|330506579|ref|YP_004383007.1| - 0.00051 20.1 3.9 0.081 13.0 0.2 2.9 2 0 0 2 2 2 2 PHD-finger HypA PF01155.19 gi|330506579|ref|YP_004383007.1| - 0.0095 16.0 2.0 0.95 9.5 0.1 2.3 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ThiJ_like PF17124.5 gi|330506579|ref|YP_004383007.1| - 0.016 14.9 0.1 2.1 8.0 0.0 2.3 1 1 1 2 2 2 0 ThiJ/PfpI family-like DZR PF12773.7 gi|330506579|ref|YP_004383007.1| - 0.21 11.6 3.4 2 8.5 1.1 2.4 2 0 0 2 2 2 0 Double zinc ribbon Cys_rich_CPCC PF14206.6 gi|330506579|ref|YP_004383007.1| - 0.34 10.7 7.9 0.35 10.7 1.4 3.2 2 1 1 3 3 3 0 Cysteine-rich CPCC CpXC PF14353.6 gi|330506579|ref|YP_004383007.1| - 0.47 10.5 2.1 1.3 9.1 0.0 2.6 4 0 0 4 4 4 0 CpXC protein DNA_ligase_ZBD PF03119.16 gi|330506579|ref|YP_004383007.1| - 0.49 10.5 3.3 1.9 8.6 0.2 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2_3 PF13878.6 gi|330506579|ref|YP_004383007.1| - 0.54 10.1 4.8 1.3 8.9 0.0 2.9 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO OrfB_Zn_ribbon PF07282.11 gi|330506579|ref|YP_004383007.1| - 0.57 10.2 7.4 6.5 6.8 0.9 2.9 2 1 1 3 3 3 0 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|330506579|ref|YP_004383007.1| - 1.5 8.8 10.6 4.2 7.4 0.3 3.9 4 0 0 4 4 4 0 SprT-like zinc ribbon domain zf-MIZ PF02891.20 gi|330506579|ref|YP_004383007.1| - 1.8 8.3 10.0 2.7 7.8 0.5 3.3 3 0 0 3 3 3 0 MIZ/SP-RING zinc finger DUF4379 PF14311.6 gi|330506579|ref|YP_004383007.1| - 3 8.3 11.3 17 5.8 0.6 3.1 2 1 0 2 2 2 0 Probable Zinc-ribbon domain Spore_III_AF PF09581.10 gi|330506580|ref|YP_004383008.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) AsnC_trans_reg PF01037.21 gi|330506581|ref|YP_004383009.1| - 1.2e-08 34.8 0.1 1.4e-08 34.6 0.1 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain sCache_3_2 PF17203.4 gi|330506581|ref|YP_004383009.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.6 1 1 0 1 1 1 0 Single cache domain 3 CarboxypepD_reg PF13620.6 gi|330506582|ref|YP_004383010.1| - 1.7e-06 28.2 1.7 0.033 14.4 0.1 2.2 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Lipoprotein_1 PF00820.19 gi|330506582|ref|YP_004383010.1| - 0.021 13.9 0.1 0.088 11.8 0.0 1.9 2 1 0 2 2 2 0 Borrelia lipoprotein DUF5516 PF17637.2 gi|330506582|ref|YP_004383010.1| - 0.069 12.9 0.3 6.1 6.7 0.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5516) LT-IIB PF06453.11 gi|330506582|ref|YP_004383010.1| - 0.072 13.0 0.1 1.1 9.1 0.0 2.1 2 0 0 2 2 2 0 Type II heat-labile enterotoxin , B subunit (LT-IIB) dCMP_cyt_deam_1 PF00383.23 gi|330506583|ref|YP_004383011.1| - 1e-21 76.7 0.0 1.4e-21 76.3 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|330506583|ref|YP_004383011.1| - 1.3e-20 73.6 0.0 1.4e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|330506583|ref|YP_004383011.1| - 0.00014 21.9 0.2 0.01 15.9 0.4 2.2 1 1 1 2 2 2 1 Bd3614-like deaminase SNAD4 PF18750.1 gi|330506583|ref|YP_004383011.1| - 0.0035 17.4 0.0 0.0065 16.6 0.0 1.4 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC2 PF18772.1 gi|330506583|ref|YP_004383011.1| - 0.061 13.4 0.0 0.098 12.7 0.0 1.3 1 0 0 1 1 1 0 APOBEC2 ATP-synt_J PF04911.12 gi|330506583|ref|YP_004383011.1| - 0.091 12.4 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 ATP synthase j chain Peptidase_C93 PF06035.11 gi|330506584|ref|YP_004383012.1| - 4.8e-07 29.7 0.0 7.6e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial transglutaminase-like cysteine proteinase BTLCP Transglut_core PF01841.19 gi|330506584|ref|YP_004383012.1| - 7.3e-07 29.6 0.0 1.2e-06 29.0 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.12 gi|330506584|ref|YP_004383012.1| - 0.0094 15.5 0.0 0.032 13.7 0.0 1.9 1 1 0 1 1 1 1 Transglutaminase-like domain Imm31 PF15591.6 gi|330506584|ref|YP_004383012.1| - 0.1 12.4 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Immunity protein 31 PDEase_I_N PF08499.12 gi|330506584|ref|YP_004383012.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase N-terminal Mut7-C PF01927.16 gi|330506585|ref|YP_004383013.1| - 1.2e-29 103.3 6.4 4.6e-28 98.2 6.4 2.1 1 1 0 1 1 1 1 Mut7-C RNAse domain zf-TFIIB PF13453.6 gi|330506585|ref|YP_004383013.1| - 0.00044 19.5 0.8 0.00099 18.4 0.8 1.6 1 0 0 1 1 1 1 Transcription factor zinc-finger DUF5615 PF18480.1 gi|330506585|ref|YP_004383013.1| - 0.00077 19.2 0.0 0.0017 18.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PhnA_Zn_Ribbon PF08274.12 gi|330506585|ref|YP_004383013.1| - 0.0042 17.0 1.0 0.0042 17.0 1.0 2.3 2 1 0 2 2 2 1 PhnA Zinc-Ribbon Prok-RING_1 PF14446.6 gi|330506585|ref|YP_004383013.1| - 0.012 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 C1_1 PF00130.22 gi|330506585|ref|YP_004383013.1| - 0.054 13.4 0.2 0.11 12.5 0.2 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RING_7 PF02591.15 gi|330506585|ref|YP_004383013.1| - 0.13 12.5 1.2 0.36 11.0 1.2 1.9 1 1 0 1 1 1 0 C4-type zinc ribbon domain MtrF PF09472.10 gi|330506585|ref|YP_004383013.1| - 0.16 11.4 0.1 0.27 10.6 0.1 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF3346 PF11826.8 gi|330506585|ref|YP_004383013.1| - 0.17 11.7 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3346) FbpA PF05833.11 gi|330506586|ref|YP_004383014.1| - 9.6e-68 229.0 0.0 1.2e-67 228.6 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|330506586|ref|YP_004383014.1| - 8.6e-24 84.3 0.0 1.5e-23 83.5 0.0 1.4 1 0 0 1 1 1 1 NFACT protein RNA binding domain HNH PF01844.23 gi|330506587|ref|YP_004383015.1| - 0.0019 18.3 2.0 0.005 17.0 2.0 1.6 1 0 0 1 1 1 1 HNH endonuclease ParBc PF02195.18 gi|330506587|ref|YP_004383015.1| - 0.0087 16.3 0.0 0.022 15.1 0.0 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain Ion_trans PF00520.31 gi|330506588|ref|YP_004383016.1| - 2e-18 66.5 17.7 2.6e-18 66.2 17.7 1.1 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|330506588|ref|YP_004383016.1| - 7.2e-16 57.9 4.7 7.2e-16 57.9 4.7 2.8 2 1 1 3 3 3 1 Ion channel DZR PF12773.7 gi|330506588|ref|YP_004383016.1| - 0.011 15.8 0.9 0.018 15.1 0.9 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|330506588|ref|YP_004383016.1| - 0.038 13.7 4.7 0.22 11.3 5.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|330506588|ref|YP_004383016.1| - 0.12 11.9 0.9 6 6.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|330506588|ref|YP_004383016.1| - 0.18 11.9 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA YhfH PF14149.6 gi|330506588|ref|YP_004383016.1| - 1.4 8.9 3.5 0.92 9.5 0.3 2.1 2 0 0 2 2 2 0 YhfH-like protein PALP PF00291.25 gi|330506589|ref|YP_004383017.1| - 1.5e-79 267.5 6.4 1.5e-79 267.5 5.6 1.4 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|330506589|ref|YP_004383017.1| - 0.00051 19.8 0.2 0.0031 17.3 0.0 2.3 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|330506589|ref|YP_004383017.1| - 0.11 13.1 0.0 0.25 12.0 0.0 1.6 1 0 0 1 1 1 0 ACT domain OrfB_Zn_ribbon PF07282.11 gi|330506590|ref|YP_004383018.1| - 1.1e-22 79.8 0.1 3.9e-22 78.0 0.1 2.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330506590|ref|YP_004383018.1| - 3.1e-07 30.6 0.3 3.1e-07 30.6 0.3 1.9 2 0 0 2 2 2 1 Probable transposase DZR PF12773.7 gi|330506590|ref|YP_004383018.1| - 0.033 14.2 0.3 0.089 12.8 0.3 1.7 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|330506590|ref|YP_004383018.1| - 0.089 12.8 0.1 0.22 11.6 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4939 PF16297.5 gi|330506593|ref|YP_004383021.1| - 0.032 14.1 0.0 0.037 13.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4939) KRTDAP PF15200.6 gi|330506594|ref|YP_004383022.1| - 0.13 12.1 0.0 0.2 11.4 0.0 1.4 1 1 0 1 1 1 0 Keratinocyte differentiation-associated HicA_toxin PF07927.12 gi|330506595|ref|YP_004383023.1| - 0.00019 21.4 0.0 0.00024 21.1 0.0 1.2 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|330506596|ref|YP_004383024.1| - 1.1e-11 44.9 0.0 1.2e-11 44.8 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF5591 PF17884.1 gi|330506597|ref|YP_004383025.1| - 5.2e-51 172.6 0.0 8.4e-51 171.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|330506597|ref|YP_004383025.1| - 4.5e-14 52.2 0.1 1.9e-13 50.2 0.1 2.1 2 0 0 2 2 2 1 PUA domain TGT PF01702.18 gi|330506597|ref|YP_004383025.1| - 5.9e-09 35.5 0.0 1.2e-08 34.5 0.0 1.5 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.6 gi|330506597|ref|YP_004383025.1| - 3.6e-06 27.0 0.0 8.6e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase Octopine_DH PF02317.17 gi|330506597|ref|YP_004383025.1| - 0.0056 16.8 0.6 0.013 15.6 0.6 1.7 1 1 0 1 1 1 1 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain TGT PF01702.18 gi|330506598|ref|YP_004383026.1| - 3.7e-78 263.1 0.0 5.1e-78 262.7 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|330506598|ref|YP_004383026.1| - 0.092 13.1 0.2 25 5.3 0.0 2.5 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation Mur_ligase_C PF02875.21 gi|330506598|ref|YP_004383026.1| - 0.13 12.5 0.0 0.48 10.7 0.0 1.9 2 0 0 2 2 2 0 Mur ligase family, glutamate ligase domain Aconitase PF00330.20 gi|330506599|ref|YP_004383027.1| - 1.3e-103 347.5 1.5 4.9e-100 335.7 4.7 2.8 2 1 0 2 2 2 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|330506599|ref|YP_004383027.1| - 6.9e-19 68.5 0.0 1.6e-18 67.3 0.0 1.6 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|330506599|ref|YP_004383027.1| - 0.018 13.8 0.0 0.031 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) HicA_toxin PF07927.12 gi|330506600|ref|YP_004383028.1| - 1.9e-19 69.4 0.2 2.2e-19 69.2 0.2 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|330506601|ref|YP_004383029.1| - 9.5e-17 61.3 0.0 1e-16 61.1 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Jag_N PF14804.6 gi|330506601|ref|YP_004383029.1| - 0.079 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Jag N-terminus HicB_lk_antitox PF15919.5 gi|330506602|ref|YP_004383030.1| - 1.7e-12 47.5 0.0 2e-12 47.3 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|330506602|ref|YP_004383030.1| - 0.027 14.5 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) PRiA4_ORF3 PF07929.11 gi|330506603|ref|YP_004383031.1| - 4.3e-66 221.9 0.2 4.9e-66 221.7 0.2 1.0 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein dCache_1 PF02743.18 gi|330506604|ref|YP_004383032.1| - 1e-08 35.3 0.1 1.3e-08 34.9 0.1 1.1 1 0 0 1 1 1 1 Cache domain Orthopox_F6 PF06601.12 gi|330506605|ref|YP_004383033.1| - 0.12 12.6 0.1 0.23 11.7 0.0 1.5 2 0 0 2 2 2 0 Orthopoxvirus F6 protein FeoA PF04023.14 gi|330506606|ref|YP_004383034.1| - 3.3e-11 43.3 0.1 3.6e-11 43.2 0.1 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.14 gi|330506607|ref|YP_004383035.1| - 2.6e-16 59.6 0.1 2.9e-16 59.5 0.1 1.0 1 0 0 1 1 1 1 FeoA domain Fe_dep_repress PF01325.19 gi|330506609|ref|YP_004383037.1| - 4.8e-19 68.3 0.0 1.1e-18 67.2 0.1 1.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|330506609|ref|YP_004383037.1| - 3e-15 56.0 0.1 7.1e-15 54.9 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|330506609|ref|YP_004383037.1| - 3.6e-05 23.6 0.0 6.8e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 MarR family ANT PF03374.14 gi|330506609|ref|YP_004383037.1| - 0.0018 18.5 0.0 0.0031 17.8 0.0 1.3 1 0 0 1 1 1 1 Phage antirepressor protein KilAC domain MarR PF01047.22 gi|330506609|ref|YP_004383037.1| - 0.0023 17.8 0.0 0.0046 16.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|330506609|ref|YP_004383037.1| - 0.0058 17.1 0.1 0.013 15.9 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|330506609|ref|YP_004383037.1| - 0.0093 15.5 0.0 0.04 13.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|330506609|ref|YP_004383037.1| - 0.011 16.0 0.0 0.02 15.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.6 gi|330506609|ref|YP_004383037.1| - 0.029 14.3 0.0 0.14 12.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|330506609|ref|YP_004383037.1| - 0.088 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|330506609|ref|YP_004383037.1| - 0.091 12.7 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Nitrate_red_del PF02613.15 gi|330506609|ref|YP_004383037.1| - 0.1 12.6 0.0 0.37 10.8 0.0 2.0 1 1 0 1 1 1 0 Nitrate reductase delta subunit IF2_N PF04760.15 gi|330506609|ref|YP_004383037.1| - 0.1 12.4 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region sCache_2 PF17200.4 gi|330506610|ref|YP_004383038.1| - 1.1e-41 142.3 0.1 8.5e-20 71.2 0.0 2.1 2 0 0 2 2 2 2 Single Cache domain 2 dCache_2 PF08269.11 gi|330506610|ref|YP_004383038.1| - 1.4e-31 109.8 0.1 5.6e-17 61.8 0.1 2.3 2 0 0 2 2 2 2 Cache domain Cache_3-Cache_2 PF17201.4 gi|330506610|ref|YP_004383038.1| - 0.002 17.4 0.0 0.074 12.3 0.0 2.1 2 0 0 2 2 2 2 Cache 3/Cache 2 fusion domain Transposase_mut PF00872.18 gi|330506611|ref|YP_004383039.1| - 2.2e-105 352.7 1.9 2.6e-105 352.4 1.9 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|330506611|ref|YP_004383039.1| - 4.9e-08 33.3 0.1 1.3e-07 31.9 0.0 1.8 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.17 gi|330506611|ref|YP_004383039.1| - 0.016 14.9 0.2 0.041 13.6 0.2 1.7 1 1 0 1 1 1 0 Transposase DUF5499 PF17603.2 gi|330506611|ref|YP_004383039.1| - 0.4 11.3 4.9 3.1 8.5 0.1 3.7 3 2 1 4 4 4 0 Family of unknown function (DUF5499) ZinT PF09223.11 gi|330506612|ref|YP_004383040.1| - 7.7e-12 45.5 0.4 5.9e-08 32.8 0.1 2.1 2 0 0 2 2 2 2 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CbiX PF01903.17 gi|330506613|ref|YP_004383041.1| - 1.2e-41 141.4 0.0 1.2e-16 60.9 0.0 4.6 4 0 0 4 4 4 4 CbiX Ferrochelatase PF00762.19 gi|330506613|ref|YP_004383041.1| - 0.0017 17.5 0.0 0.033 13.3 0.0 2.8 3 0 0 3 3 3 1 Ferrochelatase SKI PF01202.22 gi|330506615|ref|YP_004383043.1| - 2.8e-36 125.0 0.0 3.2e-36 124.9 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 gi|330506615|ref|YP_004383043.1| - 1.3e-06 29.0 0.0 2.6e-06 28.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|330506615|ref|YP_004383043.1| - 1.7e-05 25.0 0.0 8.1e-05 22.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|330506615|ref|YP_004383043.1| - 0.00017 22.0 0.0 0.00042 20.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|330506615|ref|YP_004383043.1| - 0.00073 19.4 0.1 0.38 10.6 0.0 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase Cytidylate_kin2 PF13189.6 gi|330506615|ref|YP_004383043.1| - 0.0014 18.8 0.0 0.0018 18.4 0.0 1.4 1 0 0 1 1 1 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|330506615|ref|YP_004383043.1| - 0.0023 17.7 0.0 0.0031 17.3 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase CoaE PF01121.20 gi|330506615|ref|YP_004383043.1| - 0.009 15.7 0.1 0.016 14.9 0.1 1.4 1 0 0 1 1 1 1 Dephospho-CoA kinase RuvB_N PF05496.12 gi|330506615|ref|YP_004383043.1| - 0.011 15.4 0.2 0.03 14.1 0.1 1.7 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|330506615|ref|YP_004383043.1| - 0.018 15.5 0.0 0.028 14.8 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ADK PF00406.22 gi|330506615|ref|YP_004383043.1| - 0.031 14.4 0.0 1.7 8.7 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase IstB_IS21 PF01695.17 gi|330506615|ref|YP_004383043.1| - 0.037 13.7 0.0 0.049 13.4 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein Ploopntkinase3 PF18751.1 gi|330506615|ref|YP_004383043.1| - 0.04 13.8 0.0 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_28 PF13521.6 gi|330506615|ref|YP_004383043.1| - 0.1 12.8 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Hydin_ADK PF17213.3 gi|330506615|ref|YP_004383043.1| - 0.11 12.7 0.0 0.15 12.4 0.0 1.2 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain AAA_5 PF07728.14 gi|330506615|ref|YP_004383043.1| - 0.12 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|330506616|ref|YP_004383044.1| - 1.2e-33 116.5 0.0 2.2e-33 115.7 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|330506616|ref|YP_004383044.1| - 8.6e-16 58.6 0.7 2e-07 31.1 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330506616|ref|YP_004383044.1| - 5.3e-08 32.6 0.9 4.2e-06 26.4 0.9 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|330506616|ref|YP_004383044.1| - 3.4e-06 26.7 0.0 6.6e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|330506616|ref|YP_004383044.1| - 3.7e-06 27.6 0.1 5.2e-06 27.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|330506616|ref|YP_004383044.1| - 2.8e-05 24.0 0.1 0.0082 15.9 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|330506616|ref|YP_004383044.1| - 0.00024 21.1 0.0 0.00047 20.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|330506616|ref|YP_004383044.1| - 0.0021 18.5 0.1 0.04 14.3 0.1 2.5 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|330506616|ref|YP_004383044.1| - 0.0022 17.8 0.4 0.016 14.9 0.0 2.2 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|330506616|ref|YP_004383044.1| - 0.0023 18.4 0.2 0.0064 16.9 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|330506616|ref|YP_004383044.1| - 0.016 14.6 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|330506616|ref|YP_004383044.1| - 0.021 14.8 0.1 0.081 12.8 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|330506616|ref|YP_004383044.1| - 0.024 14.9 1.0 0.17 12.2 0.4 2.5 1 1 1 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|330506616|ref|YP_004383044.1| - 0.027 13.3 0.1 1.3 7.8 0.0 2.5 2 1 1 3 3 3 0 Predicted ATPase of the ABC class AAA_19 PF13245.6 gi|330506616|ref|YP_004383044.1| - 0.048 14.0 0.4 0.21 11.9 0.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|330506616|ref|YP_004383044.1| - 0.066 12.8 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Cellulose_synt PF03552.14 gi|330506616|ref|YP_004383044.1| - 0.1 11.0 0.0 0.14 10.6 0.0 1.1 1 0 0 1 1 1 0 Cellulose synthase ATPase_2 PF01637.18 gi|330506616|ref|YP_004383044.1| - 0.14 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|330506616|ref|YP_004383044.1| - 0.14 11.8 0.1 0.22 11.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|330506616|ref|YP_004383044.1| - 0.15 12.0 0.1 0.51 10.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DLIC PF05783.11 gi|330506616|ref|YP_004383044.1| - 0.19 10.5 0.0 0.27 10.0 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) FecCD PF01032.18 gi|330506617|ref|YP_004383045.1| - 5.9e-91 304.7 31.8 6.8e-91 304.5 31.8 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|330506617|ref|YP_004383045.1| - 3.2e-06 26.8 17.7 3.2e-06 26.8 17.7 1.7 1 1 0 1 1 1 1 ABC 3 transport family PIG-F PF06699.11 gi|330506617|ref|YP_004383045.1| - 0.44 10.7 14.4 0.11 12.7 1.5 3.3 2 2 1 3 3 3 0 GPI biosynthesis protein family Pig-F DUF1129 PF06570.11 gi|330506617|ref|YP_004383045.1| - 1.6 8.2 6.1 5.9 6.3 6.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Radical_SAM PF04055.21 gi|330506618|ref|YP_004383046.1| - 2.3e-07 31.3 0.0 5e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330506618|ref|YP_004383046.1| - 0.0003 21.1 0.2 0.00065 20.0 0.2 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.6 gi|330506618|ref|YP_004383046.1| - 0.026 13.9 0.2 0.13 11.7 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Peripla_BP_2 PF01497.18 gi|330506618|ref|YP_004383046.1| - 0.18 11.4 0.0 0.33 10.5 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding protein Methyltransf_11 PF08241.12 gi|330506619|ref|YP_004383047.1| - 1.8e-17 63.8 0.0 9.3e-17 61.5 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330506619|ref|YP_004383047.1| - 4.4e-16 59.4 0.0 1.3e-15 57.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330506619|ref|YP_004383047.1| - 3.2e-12 46.5 0.0 4.3e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330506619|ref|YP_004383047.1| - 1.4e-08 35.3 0.1 6.7e-08 33.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330506619|ref|YP_004383047.1| - 4.8e-08 32.6 0.0 8.6e-08 31.8 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|330506619|ref|YP_004383047.1| - 5.1e-08 32.9 0.0 8.2e-08 32.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330506619|ref|YP_004383047.1| - 0.0005 19.7 0.0 0.001 18.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|330506619|ref|YP_004383047.1| - 0.00062 19.2 0.0 0.00099 18.6 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|330506619|ref|YP_004383047.1| - 0.005 16.2 0.0 0.0057 16.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|330506619|ref|YP_004383047.1| - 0.0051 16.7 0.0 0.058 13.2 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|330506619|ref|YP_004383047.1| - 0.0079 14.8 0.0 0.0091 14.6 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_32 PF13679.6 gi|330506619|ref|YP_004383047.1| - 0.04 13.9 0.5 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain GcpE PF04551.14 gi|330506619|ref|YP_004383047.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 GcpE protein Peripla_BP_2 PF01497.18 gi|330506620|ref|YP_004383048.1| - 1.2e-21 77.4 0.0 1.5e-21 77.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein GyrI-like PF06445.15 gi|330506621|ref|YP_004383049.1| - 1.4e-16 61.2 0.0 5.7e-16 59.2 0.0 2.1 1 1 0 1 1 1 1 GyrI-like small molecule binding domain MerR_1 PF13411.6 gi|330506621|ref|YP_004383049.1| - 9.2e-11 41.7 1.0 1.1e-09 38.2 0.0 2.4 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.23 gi|330506621|ref|YP_004383049.1| - 8.7e-08 31.8 1.9 2.1e-07 30.6 1.9 1.7 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 gi|330506621|ref|YP_004383049.1| - 0.0013 19.2 0.2 0.0028 18.1 0.2 1.5 1 0 0 1 1 1 1 MerR, DNA binding DUF362 PF04015.12 gi|330506622|ref|YP_004383050.1| - 1.4e-16 61.3 0.0 2.4e-16 60.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF362) DUF308 PF03729.13 gi|330506623|ref|YP_004383051.1| - 0.00028 21.1 5.3 0.00028 21.1 5.3 6.7 5 2 1 6 6 6 3 Short repeat of unknown function (DUF308) Trp_oprn_chp PF09534.10 gi|330506623|ref|YP_004383051.1| - 0.87 9.4 13.9 9.1 6.0 0.0 4.8 3 2 1 4 4 4 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) adh_short PF00106.25 gi|330506624|ref|YP_004383052.1| - 5.5e-48 163.0 0.2 7.3e-48 162.6 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|330506624|ref|YP_004383052.1| - 2.5e-34 118.8 0.1 3.3e-34 118.5 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|330506624|ref|YP_004383052.1| - 4.5e-11 43.0 0.1 8e-11 42.2 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|330506624|ref|YP_004383052.1| - 4.9e-05 22.9 0.1 0.0011 18.5 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|330506624|ref|YP_004383052.1| - 0.00015 21.0 0.0 0.00018 20.8 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein ADH_zinc_N PF00107.26 gi|330506624|ref|YP_004383052.1| - 0.011 15.7 0.2 0.03 14.3 0.1 1.8 2 0 0 2 2 2 0 Zinc-binding dehydrogenase 3Beta_HSD PF01073.19 gi|330506624|ref|YP_004383052.1| - 0.074 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|330506624|ref|YP_004383052.1| - 0.11 11.8 0.0 2.2 7.6 0.0 2.1 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase ADC PF06314.11 gi|330506625|ref|YP_004383053.1| - 9e-40 136.7 0.0 1.1e-39 136.4 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Oxidored_FMN PF00724.20 gi|330506626|ref|YP_004383054.1| - 4e-66 223.6 0.0 5.2e-66 223.2 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox_2 PF07992.14 gi|330506626|ref|YP_004383054.1| - 1.1e-19 70.9 4.5 3e-19 69.4 4.5 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|330506626|ref|YP_004383054.1| - 2.2e-11 43.8 2.9 4e-06 27.0 0.3 3.3 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|330506626|ref|YP_004383054.1| - 4.5e-11 43.2 3.5 1.4e-05 25.6 0.2 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|330506626|ref|YP_004383054.1| - 5.7e-08 31.9 3.4 8.1e-06 24.8 0.4 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|330506626|ref|YP_004383054.1| - 1.6e-07 30.9 0.1 0.0056 16.0 0.0 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|330506626|ref|YP_004383054.1| - 5.6e-07 29.0 2.2 6e-05 22.3 0.2 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|330506626|ref|YP_004383054.1| - 5.1e-06 26.1 4.2 2.1e-05 24.1 0.8 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330506626|ref|YP_004383054.1| - 6.6e-06 25.5 4.5 0.00043 19.5 0.2 2.8 3 0 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.19 gi|330506626|ref|YP_004383054.1| - 7.8e-06 25.4 3.6 0.0021 17.4 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain Dus PF01207.17 gi|330506626|ref|YP_004383054.1| - 4.7e-05 22.6 0.0 7.6e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) NAD_binding_7 PF13241.6 gi|330506626|ref|YP_004383054.1| - 0.001 19.5 1.0 0.23 11.9 0.1 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|330506626|ref|YP_004383054.1| - 0.003 16.9 5.1 0.45 9.8 0.5 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|330506626|ref|YP_004383054.1| - 0.0032 16.7 4.1 0.068 12.4 0.6 2.4 1 1 1 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|330506626|ref|YP_004383054.1| - 0.013 15.4 4.0 1.5 8.7 0.4 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|330506626|ref|YP_004383054.1| - 0.016 14.8 9.0 0.026 14.1 0.2 3.0 4 0 0 4 4 4 0 FAD dependent oxidoreductase XdhC_C PF13478.6 gi|330506626|ref|YP_004383054.1| - 0.052 14.0 0.2 5.2 7.6 0.0 3.1 3 0 0 3 3 3 0 XdhC Rossmann domain Lycopene_cycl PF05834.12 gi|330506626|ref|YP_004383054.1| - 0.068 12.2 1.8 0.16 11.0 0.2 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein 2-Hacid_dh_C PF02826.19 gi|330506626|ref|YP_004383054.1| - 0.14 11.5 0.4 0.46 9.8 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|330506626|ref|YP_004383054.1| - 0.38 11.0 2.3 40 4.5 0.0 3.4 5 0 0 5 5 3 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|330506626|ref|YP_004383054.1| - 1 9.4 3.4 1.3 9.0 0.2 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding HTH_10 PF04967.12 gi|330506627|ref|YP_004383055.1| - 0.0046 16.7 0.2 0.012 15.4 0.2 1.7 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|330506627|ref|YP_004383055.1| - 0.019 14.5 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|330506627|ref|YP_004383055.1| - 0.047 13.5 0.1 0.092 12.6 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain SAM_DrpA PF18255.1 gi|330506627|ref|YP_004383055.1| - 0.052 13.8 0.0 0.32 11.3 0.0 2.0 1 1 0 1 1 1 0 DNA processing protein A sterile alpha motif domain NADH-G_4Fe-4S_3 PF10588.9 gi|330506627|ref|YP_004383055.1| - 0.059 12.9 0.1 0.14 11.7 0.1 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HTH_29 PF13551.6 gi|330506627|ref|YP_004383055.1| - 0.081 13.0 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix RseC_MucC PF04246.12 gi|330506627|ref|YP_004383055.1| - 0.09 12.7 0.0 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC HTH_Crp_2 PF13545.6 gi|330506627|ref|YP_004383055.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF1673 PF07895.11 gi|330506628|ref|YP_004383056.1| - 0.0056 16.4 0.1 0.0087 15.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) STT3 PF02516.14 gi|330506628|ref|YP_004383056.1| - 0.15 10.9 0.1 0.21 10.5 0.1 1.2 1 0 0 1 1 1 0 Oligosaccharyl transferase STT3 subunit HMA PF00403.26 gi|330506629|ref|YP_004383057.1| - 5.6e-17 61.9 0.0 6.5e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain Flavin_Reduct PF01613.18 gi|330506630|ref|YP_004383058.1| - 1.9e-06 28.0 0.0 2e-06 28.0 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Transposase_20 PF02371.16 gi|330506632|ref|YP_004383060.1| - 3.2e-25 88.2 0.1 5.9e-25 87.4 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330506632|ref|YP_004383060.1| - 3.8e-21 75.6 0.0 7.3e-21 74.7 0.0 1.5 1 0 0 1 1 1 1 Transposase Init_tRNA_PT PF04179.12 gi|330506632|ref|YP_004383060.1| - 0.036 14.4 1.0 0.088 13.1 0.1 2.1 2 0 0 2 2 2 0 Rit1 DUSP-like domain OrfB_Zn_ribbon PF07282.11 gi|330506633|ref|YP_004383061.1| - 1.7e-21 75.9 0.1 4.3e-21 74.6 0.1 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330506633|ref|YP_004383061.1| - 4.3e-21 75.4 0.0 8.8e-21 74.4 0.0 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|330506633|ref|YP_004383061.1| - 4.4e-09 35.7 0.8 1.2e-08 34.3 0.8 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|330506633|ref|YP_004383061.1| - 0.015 15.3 0.2 0.025 14.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Pestivirus_E2 PF16329.5 gi|330506633|ref|YP_004383061.1| - 0.045 12.6 0.1 0.067 12.0 0.1 1.2 1 0 0 1 1 1 0 Pestivirus envelope glycoprotein E2 TF_Zn_Ribbon PF08271.12 gi|330506633|ref|YP_004383061.1| - 0.069 12.7 0.6 0.45 10.1 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding FYVE PF01363.21 gi|330506633|ref|YP_004383061.1| - 0.1 12.8 0.4 0.23 11.6 0.4 1.5 1 0 0 1 1 1 0 FYVE zinc finger RecR PF02132.15 gi|330506633|ref|YP_004383061.1| - 0.8 9.3 3.9 2.5 7.7 2.0 2.6 2 1 0 2 2 2 0 RecR protein Hfq PF17209.3 gi|330506636|ref|YP_004383064.1| - 1.9e-09 37.0 0.0 2.4e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Hfq protein LSM PF01423.22 gi|330506636|ref|YP_004383064.1| - 0.083 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 LSM domain YabP PF07873.11 gi|330506636|ref|YP_004383064.1| - 0.15 11.9 0.0 0.26 11.1 0.0 1.4 1 1 0 1 1 1 0 YabP family SSF PF00474.17 gi|330506637|ref|YP_004383065.1| - 6.3e-33 114.2 35.6 7.7e-31 107.3 35.6 2.9 1 1 0 1 1 1 1 Sodium:solute symporter family OppC_N PF12911.7 gi|330506639|ref|YP_004383067.1| - 0.13 12.2 2.4 5 7.2 0.1 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C FeoB_associated PF12669.7 gi|330506639|ref|YP_004383067.1| - 2.4 8.6 4.8 1.3 9.5 0.2 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DUF3303 PF11746.8 gi|330506640|ref|YP_004383068.1| - 0.00018 21.7 0.0 0.00023 21.3 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3303) Mvb12 PF09452.10 gi|330506640|ref|YP_004383068.1| - 0.019 15.4 0.0 0.024 15.1 0.0 1.2 1 0 0 1 1 1 0 ESCRT-I subunit Mvb12 Flavin_Reduct PF01613.18 gi|330506641|ref|YP_004383069.1| - 5.8e-28 97.9 0.0 6.6e-28 97.7 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Nitroreductase PF00881.24 gi|330506642|ref|YP_004383070.1| - 6.1e-30 104.5 0.3 1.9e-16 60.6 0.1 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|330506642|ref|YP_004383070.1| - 5.8e-16 58.7 0.1 3.3e-06 26.8 0.0 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase DUF1601 PF07671.11 gi|330506642|ref|YP_004383070.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1601) ABC_tran PF00005.27 gi|330506643|ref|YP_004383071.1| - 6.4e-51 172.5 0.1 3.2e-27 95.7 0.0 2.5 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|330506643|ref|YP_004383071.1| - 3.6e-05 23.3 5.9 0.098 12.1 0.1 3.5 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|330506643|ref|YP_004383071.1| - 0.00029 20.8 0.9 0.79 9.6 0.1 2.6 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 gi|330506643|ref|YP_004383071.1| - 0.00062 19.5 3.8 0.25 11.1 0.0 2.7 3 0 0 3 3 2 2 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|330506643|ref|YP_004383071.1| - 0.0051 17.0 0.0 9 6.6 0.0 3.4 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_21 PF13304.6 gi|330506643|ref|YP_004383071.1| - 0.0064 16.3 3.6 14 5.4 0.0 3.9 3 1 0 4 4 4 0 AAA domain, putative AbiEii toxin, Type IV TA system NB-ARC PF00931.22 gi|330506643|ref|YP_004383071.1| - 0.013 14.7 3.1 2.3 7.3 0.6 2.5 2 0 0 2 2 2 0 NB-ARC domain AAA_16 PF13191.6 gi|330506643|ref|YP_004383071.1| - 0.016 15.6 1.0 1.3 9.4 0.3 2.8 2 1 0 2 2 2 0 AAA ATPase domain MobB PF03205.14 gi|330506643|ref|YP_004383071.1| - 0.019 14.8 0.8 2.2 8.2 0.5 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.6 gi|330506643|ref|YP_004383071.1| - 0.023 13.4 0.1 4.8 5.7 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|330506643|ref|YP_004383071.1| - 0.026 14.2 1.4 6.6 6.4 0.0 2.7 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|330506643|ref|YP_004383071.1| - 0.03 14.4 3.3 0.11 12.6 0.1 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_18 PF13238.6 gi|330506643|ref|YP_004383071.1| - 0.049 14.2 1.0 7.4 7.1 0.2 2.9 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|330506643|ref|YP_004383071.1| - 0.089 12.4 0.2 17 5.0 0.0 2.4 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.6 gi|330506643|ref|YP_004383071.1| - 0.095 13.0 2.0 15 5.8 0.0 3.0 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|330506643|ref|YP_004383071.1| - 0.2 11.8 3.1 3.6 7.7 0.0 3.4 5 0 0 5 5 5 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|330506643|ref|YP_004383071.1| - 0.21 12.1 0.1 13 6.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|330506643|ref|YP_004383071.1| - 0.41 10.3 2.0 20 4.8 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Inhibitor_I78 PF11720.8 gi|330506644|ref|YP_004383072.1| - 0.0062 16.6 0.0 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 Peptidase inhibitor I78 family PASTA PF03793.19 gi|330506644|ref|YP_004383072.1| - 0.064 13.1 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 PASTA domain Fer2_4 PF13510.6 gi|330506644|ref|YP_004383072.1| - 0.079 13.0 0.1 0.67 10.0 0.0 2.3 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain DUF2102 PF09875.9 gi|330506645|ref|YP_004383073.1| - 1.2e-41 140.7 0.0 1.4e-41 140.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Sigma54_CBD PF04963.13 gi|330506645|ref|YP_004383073.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain DUF2112 PF09885.9 gi|330506646|ref|YP_004383074.1| - 9.4e-61 204.0 0.0 1.1e-60 203.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) BcrAD_BadFG PF01869.20 gi|330506647|ref|YP_004383075.1| - 1e-63 215.4 4.4 1.4e-63 214.9 4.4 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|330506647|ref|YP_004383075.1| - 2.2e-05 24.8 0.1 0.0002 21.8 0.1 2.4 1 1 0 1 1 1 1 Cell division protein FtsA Peptidase_M22 PF00814.25 gi|330506647|ref|YP_004383075.1| - 0.0012 18.7 0.0 0.63 9.7 0.0 2.5 2 0 0 2 2 2 2 Glycoprotease family FGGY_C PF02782.16 gi|330506647|ref|YP_004383075.1| - 0.0079 15.9 0.1 0.019 14.7 0.1 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain MafB19-deam PF14437.6 gi|330506647|ref|YP_004383075.1| - 0.041 13.6 0.3 3.6 7.3 0.0 2.4 2 0 0 2 2 2 0 MafB19-like deaminase HGD-D PF06050.13 gi|330506647|ref|YP_004383075.1| - 0.047 13.4 0.1 0.1 12.3 0.1 1.6 2 0 0 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component FGGY_N PF00370.21 gi|330506647|ref|YP_004383075.1| - 0.058 13.0 0.2 0.87 9.1 0.2 2.3 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain UPF0004 PF00919.20 gi|330506647|ref|YP_004383075.1| - 0.12 12.4 0.2 2.5 8.2 0.1 2.5 2 0 0 2 2 2 0 Uncharacterized protein family UPF0004 Hydant_A_N PF05378.13 gi|330506647|ref|YP_004383075.1| - 0.94 9.2 6.4 0.19 11.5 1.0 2.4 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region DUF2113 PF09886.9 gi|330506648|ref|YP_004383076.1| - 8.6e-63 211.0 0.2 9.8e-63 210.8 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) MCR_C PF04609.12 gi|330506649|ref|YP_004383077.1| - 9.9e-121 401.9 0.1 1.1e-120 401.7 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C TerB_C PF15615.6 gi|330506651|ref|YP_004383079.1| - 0.033 14.5 0.2 0.066 13.5 0.2 1.6 1 0 0 1 1 1 0 TerB-C domain NRBF2 PF08961.10 gi|330506651|ref|YP_004383079.1| - 0.11 12.1 0.2 0.11 12.1 0.2 1.6 2 0 0 2 2 2 0 Nuclear receptor-binding factor 2, autophagy regulator VWA PF00092.28 gi|330506652|ref|YP_004383080.1| - 1.4e-15 58.0 0.0 3.1e-15 56.9 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain SBP_bac_11 PF13531.6 gi|330506652|ref|YP_004383080.1| - 4.6e-14 52.7 0.1 6.6e-14 52.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein VWA_2 PF13519.6 gi|330506652|ref|YP_004383080.1| - 9.5e-10 39.1 0.0 2.1e-09 38.0 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain Citrate_bind PF16114.5 gi|330506652|ref|YP_004383080.1| - 0.039 13.5 0.0 0.067 12.7 0.0 1.4 1 0 0 1 1 1 0 ATP citrate lyase citrate-binding Beta-Casp PF10996.8 gi|330506652|ref|YP_004383080.1| - 0.13 12.6 0.0 21 5.4 0.0 2.6 2 0 0 2 2 2 0 Beta-Casp domain TelA PF05816.11 gi|330506653|ref|YP_004383081.1| - 4.1e-78 262.8 20.2 5e-78 262.5 20.2 1.1 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) PMC2NT PF08066.12 gi|330506653|ref|YP_004383081.1| - 0.0076 16.9 1.2 0.0076 16.9 1.2 2.2 2 0 0 2 2 2 1 PMC2NT (NUC016) domain IGR PF09597.10 gi|330506653|ref|YP_004383081.1| - 0.034 14.2 0.0 12 6.1 0.1 2.7 2 0 0 2 2 2 0 IGR protein motif Fib_alpha PF08702.10 gi|330506653|ref|YP_004383081.1| - 0.11 12.6 22.8 0.35 11.1 7.0 3.6 3 1 0 3 3 3 0 Fibrinogen alpha/beta chain family RPW8 PF05659.11 gi|330506653|ref|YP_004383081.1| - 0.16 11.7 9.1 0.39 10.4 0.9 3.9 3 1 1 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 UPF0242 PF06785.11 gi|330506653|ref|YP_004383081.1| - 0.9 9.6 17.9 0.054 13.6 4.6 2.6 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Cytochrom_C_2 PF01322.20 gi|330506653|ref|YP_004383081.1| - 2.2 9.2 4.6 1.4 9.8 1.4 2.3 2 1 1 3 3 3 0 Cytochrome C' Med2 PF11214.8 gi|330506653|ref|YP_004383081.1| - 2.7 8.2 10.8 0.23 11.6 5.4 2.1 2 0 0 2 2 2 0 Mediator complex subunit 2 Syntaxin_2 PF14523.6 gi|330506653|ref|YP_004383081.1| - 3.6 8.0 13.8 0.064 13.6 2.5 3.5 3 1 1 4 4 4 0 Syntaxin-like protein MtrB PF05440.12 gi|330506653|ref|YP_004383081.1| - 6.8 7.2 6.3 22 5.5 0.2 3.6 3 1 1 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B SPOUT_MTase PF02590.17 gi|330506654|ref|YP_004383082.1| - 5.3e-52 175.9 0.0 5.9e-52 175.7 0.0 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase SPOUT_MTase_2 PF14419.6 gi|330506654|ref|YP_004383082.1| - 0.0034 16.8 0.0 0.005 16.2 0.0 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP CinA_KH PF18146.1 gi|330506654|ref|YP_004383082.1| - 0.064 13.4 0.3 11 6.3 0.0 2.3 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain Leucyl-specific PF14795.6 gi|330506654|ref|YP_004383082.1| - 0.14 12.2 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Leucine-tRNA synthetase-specific domain DUF3568 PF12092.8 gi|330506655|ref|YP_004383083.1| - 0.024 14.7 0.1 0.05 13.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3568) HMGL-like PF00682.19 gi|330506658|ref|YP_004383086.1| - 1.4e-69 234.6 3.8 1.4e-69 234.6 3.8 2.1 3 0 0 3 3 3 1 HMGL-like LeuA_dimer PF08502.10 gi|330506658|ref|YP_004383086.1| - 4e-32 110.9 2.5 4e-32 110.9 2.5 1.8 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain IMPDH PF00478.25 gi|330506658|ref|YP_004383086.1| - 0.17 10.8 5.6 0.034 13.1 1.9 1.7 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain TPP_enzyme_N PF02776.18 gi|330506659|ref|YP_004383087.1| - 2e-60 203.3 0.1 4.6e-60 202.1 0.1 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|330506659|ref|YP_004383087.1| - 3.9e-54 182.1 0.1 7.1e-54 181.3 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|330506659|ref|YP_004383087.1| - 5.9e-50 169.0 0.0 2.1e-49 167.2 0.0 2.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|330506659|ref|YP_004383087.1| - 0.0062 16.3 0.2 0.016 15.0 0.2 1.6 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALS_ss_C PF10369.9 gi|330506660|ref|YP_004383088.1| - 3.1e-31 107.4 5.4 8.1e-30 102.9 4.2 2.2 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|330506660|ref|YP_004383088.1| - 1.5e-16 60.0 1.8 6.9e-16 57.8 0.1 2.5 2 1 1 3 3 3 1 ACT domain ACT PF01842.25 gi|330506660|ref|YP_004383088.1| - 6.2e-13 48.3 3.8 7.3e-12 44.8 0.2 2.5 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|330506660|ref|YP_004383088.1| - 9e-07 29.4 0.8 9e-07 29.4 0.8 2.0 2 1 0 2 2 2 1 ACT domain NIL PF09383.10 gi|330506660|ref|YP_004383088.1| - 1.3e-06 28.2 1.0 0.017 15.0 0.1 2.3 2 0 0 2 2 2 2 NIL domain Saccharop_dh_N PF04455.12 gi|330506660|ref|YP_004383088.1| - 0.0004 20.7 0.3 0.03 14.7 0.0 2.4 1 1 0 2 2 2 1 LOR/SDH bifunctional enzyme conserved region Acylphosphatase PF00708.18 gi|330506660|ref|YP_004383088.1| - 0.0051 17.2 0.3 1.7 9.1 0.0 2.4 2 1 0 2 2 2 2 Acylphosphatase SLS PF14611.6 gi|330506660|ref|YP_004383088.1| - 0.015 15.2 3.4 0.16 11.8 0.6 2.0 1 1 1 2 2 2 0 Mitochondrial inner-membrane-bound regulator ACT_6 PF13740.6 gi|330506660|ref|YP_004383088.1| - 0.016 15.2 2.1 6.4 6.8 0.2 3.0 2 1 0 2 2 2 0 ACT domain DUF4423 PF14394.6 gi|330506660|ref|YP_004383088.1| - 0.025 14.3 1.3 0.084 12.6 0.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) SBDS_C PF09377.10 gi|330506660|ref|YP_004383088.1| - 0.16 12.0 4.1 1.3 9.1 4.1 2.0 1 1 0 1 1 1 0 SBDS protein C-terminal domain IlvN PF07991.12 gi|330506661|ref|YP_004383089.1| - 4.4e-72 241.0 0.2 5.9e-72 240.6 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|330506661|ref|YP_004383089.1| - 5.1e-62 208.4 0.6 7.2e-62 207.9 0.6 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|330506661|ref|YP_004383089.1| - 3.8e-07 29.6 0.0 6.3e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|330506661|ref|YP_004383089.1| - 2.3e-05 24.6 0.0 5.4e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|330506661|ref|YP_004383089.1| - 0.00068 20.2 0.1 0.0015 19.0 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Microvir_H PF04687.12 gi|330506661|ref|YP_004383089.1| - 0.014 14.8 1.0 0.026 13.9 1.0 1.3 1 0 0 1 1 1 0 Microvirus H protein (pilot protein) AdoHcyase_NAD PF00670.21 gi|330506661|ref|YP_004383089.1| - 0.046 13.8 0.0 0.086 12.9 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF1829 PF08862.10 gi|330506662|ref|YP_004383090.1| - 1.2e-31 109.0 0.0 2.2e-31 108.2 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function DUF1829 TPR_1 PF00515.28 gi|330506663|ref|YP_004383091.1| - 5.5e-31 105.1 3.9 2.2e-06 27.3 0.1 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330506663|ref|YP_004383091.1| - 7.1e-27 93.8 3.3 3e-09 37.4 1.6 4.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330506663|ref|YP_004383091.1| - 1.2e-26 90.6 6.8 1.8e-05 24.5 0.0 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330506663|ref|YP_004383091.1| - 1.5e-24 86.3 20.1 3.9e-09 36.9 0.5 4.1 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330506663|ref|YP_004383091.1| - 8.4e-23 78.6 1.4 0.00041 20.3 0.0 6.4 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330506663|ref|YP_004383091.1| - 1.6e-20 72.0 13.8 9.9e-06 26.0 0.4 6.2 2 2 4 6 6 6 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330506663|ref|YP_004383091.1| - 6.7e-20 71.0 7.1 2.1e-11 43.8 0.5 4.4 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330506663|ref|YP_004383091.1| - 2e-18 65.8 8.5 4.1e-07 29.6 0.1 6.0 3 1 3 6 6 6 4 TPR repeat TPR_17 PF13431.6 gi|330506663|ref|YP_004383091.1| - 4.9e-17 61.0 0.6 3.2e-05 24.0 0.1 4.7 5 1 0 5 5 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330506663|ref|YP_004383091.1| - 6.9e-17 61.5 9.1 1.2e-06 28.8 1.3 5.0 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330506663|ref|YP_004383091.1| - 4.4e-12 45.8 4.1 0.31 11.8 0.0 6.1 6 0 0 6 6 6 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330506663|ref|YP_004383091.1| - 1.8e-10 40.9 0.3 0.00035 20.7 0.1 3.5 2 2 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|330506663|ref|YP_004383091.1| - 1e-09 38.3 0.1 0.037 14.1 0.0 5.0 5 1 0 5 5 5 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|330506663|ref|YP_004383091.1| - 2.7e-07 30.2 6.3 0.37 10.7 0.3 5.7 6 0 0 6 6 6 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330506663|ref|YP_004383091.1| - 3e-07 30.6 3.7 0.4 10.7 0.2 4.0 2 2 1 3 3 3 3 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|330506663|ref|YP_004383091.1| - 5.5e-07 28.9 2.1 0.00072 18.6 0.2 2.6 1 1 0 2 2 2 2 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|330506663|ref|YP_004383091.1| - 4.3e-06 27.2 3.1 0.36 11.3 2.7 3.9 2 2 1 3 3 3 1 Bacterial transcriptional activator domain TPR_7 PF13176.6 gi|330506663|ref|YP_004383091.1| - 5.5e-05 22.9 7.2 20 5.5 0.0 5.9 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|330506663|ref|YP_004383091.1| - 0.0001 21.8 0.5 0.14 11.5 0.0 3.3 2 1 1 3 3 3 1 MalT-like TPR region TOM20_plant PF06552.12 gi|330506663|ref|YP_004383091.1| - 0.0003 20.6 0.1 6 6.6 0.0 3.4 3 0 0 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_20 PF14561.6 gi|330506663|ref|YP_004383091.1| - 0.00038 20.7 6.5 1.3 9.4 0.4 4.0 2 1 2 4 4 4 2 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|330506663|ref|YP_004383091.1| - 0.00051 20.0 2.3 0.032 14.2 0.0 3.7 2 2 2 4 4 4 1 Virulence factor membrane-bound polymerase, C-terminal TPR_4 PF07721.14 gi|330506663|ref|YP_004383091.1| - 0.0011 19.4 10.8 2.8 8.8 0.2 4.9 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|330506663|ref|YP_004383091.1| - 0.011 15.0 7.3 0.12 11.5 7.1 2.3 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_5 PF12688.7 gi|330506663|ref|YP_004383091.1| - 0.035 14.4 1.8 3.2 8.0 0.3 2.8 1 1 0 2 2 2 0 Tetratrico peptide repeat SHNi-TPR PF10516.9 gi|330506663|ref|YP_004383091.1| - 0.035 13.6 1.6 1.8 8.1 0.1 3.7 4 0 0 4 4 4 0 SHNi-TPR Helicase_C_2 PF13307.6 gi|330506663|ref|YP_004383091.1| - 0.038 14.1 0.0 0.063 13.4 0.0 1.2 1 0 0 1 1 1 0 Helicase C-terminal domain ANAPC5 PF12862.7 gi|330506663|ref|YP_004383091.1| - 0.049 13.7 0.1 1.6 8.8 0.0 3.0 2 1 1 3 3 3 0 Anaphase-promoting complex subunit 5 DUF4810 PF16068.5 gi|330506663|ref|YP_004383091.1| - 0.1 13.1 0.0 27 5.4 0.0 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4810) Coatomer_E PF04733.14 gi|330506663|ref|YP_004383091.1| - 0.13 11.7 2.1 19 4.5 0.1 3.1 2 1 1 3 3 3 0 Coatomer epsilon subunit AAA_24 PF13479.6 gi|330506665|ref|YP_004383093.1| - 0.014 15.2 0.4 0.13 12.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|330506665|ref|YP_004383093.1| - 0.025 14.9 0.1 0.13 12.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|330506665|ref|YP_004383093.1| - 0.059 13.7 0.2 0.47 10.8 0.2 2.5 1 1 0 1 1 1 0 AAA ATPase domain HEAT_2 PF13646.6 gi|330506665|ref|YP_004383093.1| - 0.07 13.5 1.5 0.59 10.6 0.5 2.9 3 0 0 3 3 3 0 HEAT repeats AAA_19 PF13245.6 gi|330506665|ref|YP_004383093.1| - 0.15 12.4 0.0 6.1 7.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|330506665|ref|YP_004383093.1| - 0.32 11.4 1.0 8.1 6.9 0.0 3.1 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Putative_PNPOx PF01243.20 gi|330506666|ref|YP_004383094.1| - 3.3e-07 30.4 0.0 4.3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.12 gi|330506666|ref|YP_004383094.1| - 0.04 13.7 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF447) DNA_pol_B PF00136.21 gi|330506667|ref|YP_004383095.1| - 8.6e-20 70.9 0.2 6.1e-10 38.4 0.0 3.1 2 1 1 3 3 3 3 DNA polymerase family B Response_reg PF00072.24 gi|330506668|ref|YP_004383096.1| - 4.6e-30 104.1 0.1 5.3e-30 103.9 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Acylphosphatase PF00708.18 gi|330506669|ref|YP_004383097.1| - 2.6e-10 40.6 0.1 4.2e-10 39.9 0.1 1.3 1 0 0 1 1 1 1 Acylphosphatase Exo_endo_phos PF03372.23 gi|330506670|ref|YP_004383098.1| - 4.9e-25 88.4 0.0 5.6e-25 88.2 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|330506670|ref|YP_004383098.1| - 0.0079 16.0 0.0 0.053 13.4 0.0 2.0 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase DUF1616 PF07760.11 gi|330506671|ref|YP_004383099.1| - 5.4e-52 177.0 0.0 7.3e-52 176.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Y_Y_Y PF07495.13 gi|330506671|ref|YP_004383099.1| - 1.6e-10 40.8 0.0 0.0012 18.8 0.0 4.2 4 0 0 4 4 4 2 Y_Y_Y domain PKD PF00801.20 gi|330506671|ref|YP_004383099.1| - 5.1e-07 29.4 1.5 1.2 9.0 0.1 4.7 4 0 0 4 4 4 3 PKD domain Big_7 PF17957.1 gi|330506671|ref|YP_004383099.1| - 6.1e-06 26.9 5.3 0.051 14.3 0.1 4.9 5 0 0 5 5 5 2 Bacterial Ig domain DUF4399 PF14347.6 gi|330506671|ref|YP_004383099.1| - 6.1e-06 26.5 0.1 5.1 7.6 0.0 4.7 5 0 0 5 5 5 2 Domain of unknown function (DUF4399) BiPBP_C PF06832.12 gi|330506671|ref|YP_004383099.1| - 0.01 15.9 2.1 0.62 10.2 0.1 3.8 4 0 0 4 4 4 1 Penicillin-Binding Protein C-terminus Family DUF2157 PF09925.9 gi|330506671|ref|YP_004383099.1| - 4.2 7.1 11.0 24 4.7 11.0 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) Glycos_transf_1 PF00534.20 gi|330506672|ref|YP_004383100.1| - 2.6e-30 105.2 0.0 3.7e-30 104.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330506672|ref|YP_004383100.1| - 2e-25 89.8 0.0 4e-25 88.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330506672|ref|YP_004383100.1| - 2e-13 50.7 4.9 9.9e-12 45.2 4.0 2.5 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|330506672|ref|YP_004383100.1| - 1.4e-10 41.8 1.6 0.001 19.6 0.0 3.1 2 1 1 3 3 3 2 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|330506672|ref|YP_004383100.1| - 1.5e-09 38.1 0.0 2.7e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|330506672|ref|YP_004383100.1| - 0.012 15.6 0.0 0.033 14.2 0.0 1.9 1 1 0 1 1 1 0 Glycosyl transferase 4-like LPG_synthase_TM PF03706.13 gi|330506673|ref|YP_004383101.1| - 4.9e-44 151.1 37.3 6e-44 150.8 37.3 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region SecD_SecF PF02355.16 gi|330506674|ref|YP_004383102.1| - 8.2e-14 51.4 15.0 4.2e-12 45.8 15.0 2.2 1 1 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|330506674|ref|YP_004383102.1| - 9.3e-06 25.0 0.4 2.7e-05 23.5 0.4 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif SecD_SecF PF02355.16 gi|330506675|ref|YP_004383103.1| - 6.5e-25 87.6 9.6 9.6e-25 87.1 9.6 1.2 1 0 0 1 1 1 1 Protein export membrane protein Patched PF02460.18 gi|330506675|ref|YP_004383103.1| - 1.6e-05 23.2 5.0 2.2e-05 22.8 5.0 1.1 1 0 0 1 1 1 1 Patched family Sec_GG PF07549.14 gi|330506675|ref|YP_004383103.1| - 2.8e-05 23.4 0.0 8.1e-05 22.0 0.0 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.15 gi|330506675|ref|YP_004383103.1| - 0.27 10.1 16.6 0.014 14.4 10.8 1.7 2 0 0 2 2 2 0 MMPL family RraA-like PF03737.15 gi|330506676|ref|YP_004383104.1| - 2.9e-42 144.4 0.5 2.9e-42 144.4 0.5 2.2 2 1 0 2 2 2 1 Aldolase/RraA OMPdecase PF00215.24 gi|330506676|ref|YP_004383104.1| - 1.2e-17 64.3 5.3 2.2e-17 63.4 5.3 1.5 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|330506676|ref|YP_004383104.1| - 4.6e-07 29.2 3.1 4.6e-07 29.2 3.1 1.7 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase HMGL-like PF00682.19 gi|330506676|ref|YP_004383104.1| - 3e-06 27.0 4.7 0.0011 18.6 0.2 2.2 1 1 1 2 2 2 2 HMGL-like TMP-TENI PF02581.17 gi|330506676|ref|YP_004383104.1| - 3.9e-05 23.1 2.6 9.2e-05 21.8 0.5 2.3 2 0 0 2 2 2 1 Thiamine monophosphate synthase His_biosynth PF00977.21 gi|330506676|ref|YP_004383104.1| - 0.0001 21.9 2.5 0.00023 20.7 0.8 2.1 1 1 0 2 2 2 1 Histidine biosynthesis protein PEP_mutase PF13714.6 gi|330506676|ref|YP_004383104.1| - 0.00011 21.7 2.6 0.04 13.4 0.2 2.3 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase PEP_hydrolase PF09370.10 gi|330506676|ref|YP_004383104.1| - 0.001 18.3 2.7 0.0012 18.1 0.7 2.1 1 1 0 1 1 1 1 Phosphoenolpyruvate hydrolase-like Trp_syntA PF00290.20 gi|330506676|ref|YP_004383104.1| - 0.0058 15.5 5.6 0.036 12.9 3.4 2.8 1 1 2 3 3 3 1 Tryptophan synthase alpha chain NMO PF03060.15 gi|330506676|ref|YP_004383104.1| - 0.0064 15.9 5.4 0.01 15.2 5.4 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Dus PF01207.17 gi|330506676|ref|YP_004383104.1| - 0.024 13.7 0.1 0.05 12.7 0.1 1.5 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) FMN_dh PF01070.18 gi|330506676|ref|YP_004383104.1| - 0.039 13.0 7.8 0.03 13.3 3.4 2.1 1 1 1 2 2 2 0 FMN-dependent dehydrogenase IGPS PF00218.21 gi|330506676|ref|YP_004383104.1| - 0.044 13.0 2.3 0.13 11.4 2.3 1.8 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase DUF561 PF04481.12 gi|330506676|ref|YP_004383104.1| - 0.084 12.0 2.5 0.13 11.4 1.0 2.1 2 2 0 2 2 2 0 Protein of unknown function (DUF561) DUF3983 PF13137.6 gi|330506676|ref|YP_004383104.1| - 0.68 9.8 4.2 0.29 11.0 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3983) DAP_epimerase PF01678.19 gi|330506677|ref|YP_004383105.1| - 9e-57 190.5 0.1 1e-33 116.1 0.0 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|330506677|ref|YP_004383105.1| - 9.5e-05 21.6 0.0 0.00038 19.6 0.0 1.8 2 0 0 2 2 2 1 Proline racemase DHHA1 PF02272.19 gi|330506679|ref|YP_004383107.1| - 1.5e-14 54.6 0.5 3.7e-14 53.3 0.5 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|330506679|ref|YP_004383107.1| - 0.0039 17.4 0.1 0.0085 16.3 0.1 1.6 1 0 0 1 1 1 1 DHH family SelA PF03841.13 gi|330506679|ref|YP_004383107.1| - 0.036 13.1 0.0 2.5 7.0 0.0 2.2 2 0 0 2 2 2 0 L-seryl-tRNA selenium transferase Phosphodiest PF01663.22 gi|330506681|ref|YP_004383109.1| - 3.2e-13 50.0 0.0 3.9e-06 26.7 0.0 2.1 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|330506681|ref|YP_004383109.1| - 2.5e-10 40.2 0.0 9.1e-06 25.3 0.0 3.0 3 0 0 3 3 3 3 Sulfatase Metalloenzyme PF01676.18 gi|330506681|ref|YP_004383109.1| - 0.018 14.4 0.0 0.037 13.4 0.0 1.6 1 1 0 1 1 1 0 Metalloenzyme superfamily Lambda_Kil PF06301.11 gi|330506682|ref|YP_004383110.1| - 0.054 13.1 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage lambda Kil protein Cdc6_C PF09079.11 gi|330506684|ref|YP_004383112.1| - 0.00088 19.2 0.1 0.0017 18.2 0.1 1.4 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain PaaX PF07848.12 gi|330506684|ref|YP_004383112.1| - 0.035 14.3 0.1 0.067 13.4 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein Fe_dep_repress PF01325.19 gi|330506684|ref|YP_004383112.1| - 0.091 13.0 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TPR_1 PF00515.28 gi|330506685|ref|YP_004383113.1| - 2.1e-101 328.0 23.1 5.2e-08 32.4 0.1 18.1 19 0 0 19 19 18 16 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330506685|ref|YP_004383113.1| - 7.4e-99 316.1 36.6 3.4e-07 29.9 0.3 18.7 19 0 0 19 19 19 17 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330506685|ref|YP_004383113.1| - 2.2e-74 244.9 35.0 1.7e-09 37.2 0.1 18.6 3 3 16 19 19 19 16 TPR repeat TPR_8 PF13181.6 gi|330506685|ref|YP_004383113.1| - 2.6e-73 236.2 25.1 2e-05 24.4 0.0 17.8 18 0 0 18 18 18 14 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330506685|ref|YP_004383113.1| - 3.5e-70 232.4 36.4 2.7e-09 37.5 0.4 12.2 5 3 8 14 14 14 14 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330506685|ref|YP_004383113.1| - 1.1e-61 205.2 45.8 2.4e-08 34.3 0.6 12.2 5 3 5 12 12 12 12 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330506685|ref|YP_004383113.1| - 3.3e-60 195.6 38.9 0.00012 22.5 0.3 17.7 1 1 17 18 18 18 17 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330506685|ref|YP_004383113.1| - 2.2e-52 171.7 29.6 0.00056 20.1 0.0 19.3 18 1 1 19 19 19 11 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330506685|ref|YP_004383113.1| - 2.9e-48 162.0 50.7 1.6e-08 34.7 0.3 14.1 3 3 12 15 15 15 13 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330506685|ref|YP_004383113.1| - 5e-43 145.1 29.1 4e-06 26.9 0.0 11.1 3 2 8 13 13 13 10 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330506685|ref|YP_004383113.1| - 3.2e-34 115.3 30.2 0.0039 17.7 0.2 15.7 17 0 0 17 17 15 7 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330506685|ref|YP_004383113.1| - 2.1e-29 99.3 36.6 0.0063 16.5 0.2 14.8 14 2 1 15 15 14 7 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330506685|ref|YP_004383113.1| - 2.5e-26 91.7 11.3 0.015 15.5 0.1 8.5 3 2 5 9 9 9 8 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|330506685|ref|YP_004383113.1| - 3.2e-17 61.8 38.0 0.0024 17.7 0.4 12.0 13 0 0 13 13 11 5 Tetratricopeptide repeat TPR_15 PF13429.6 gi|330506685|ref|YP_004383113.1| - 7.7e-16 58.1 22.0 1.5e-05 24.4 1.8 6.2 2 2 2 6 6 6 5 Tetratricopeptide repeat NARP1 PF12569.8 gi|330506685|ref|YP_004383113.1| - 2e-15 56.7 8.3 0.0063 15.5 0.2 7.9 2 2 6 10 10 10 3 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|330506685|ref|YP_004383113.1| - 2.3e-15 57.3 23.0 5.5e-05 23.6 0.6 7.4 4 4 2 7 7 7 3 Bacterial transcriptional activator domain TPR_20 PF14561.6 gi|330506685|ref|YP_004383113.1| - 3e-13 49.9 24.4 0.0022 18.3 0.4 8.7 6 3 5 11 11 10 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330506685|ref|YP_004383113.1| - 1.5e-11 44.1 25.7 0.011 15.8 0.0 12.3 10 3 4 14 14 13 1 Fis1 C-terminal tetratricopeptide repeat TPR_4 PF07721.14 gi|330506685|ref|YP_004383113.1| - 9.2e-11 41.3 43.3 0.0098 16.4 1.1 11.5 14 0 0 14 14 10 4 Tetratricopeptide repeat TPR_3 PF07720.12 gi|330506685|ref|YP_004383113.1| - 7.4e-08 32.2 10.6 0.0039 17.1 0.0 6.4 7 0 0 7 7 6 2 Tetratricopeptide repeat ChAPs PF09295.10 gi|330506685|ref|YP_004383113.1| - 2.7e-07 30.0 0.0 0.017 14.1 0.0 3.9 2 2 2 4 4 4 2 ChAPs (Chs5p-Arf1p-binding proteins) DUF3856 PF12968.7 gi|330506685|ref|YP_004383113.1| - 3.5e-07 30.4 11.7 1.5 8.9 0.0 8.2 6 5 2 8 8 7 1 Domain of Unknown Function (DUF3856) TPR_21 PF09976.9 gi|330506685|ref|YP_004383113.1| - 3.9e-07 30.0 20.4 0.02 14.6 1.5 7.6 1 1 5 7 7 7 2 Tetratricopeptide repeat-like domain PknG_TPR PF16918.5 gi|330506685|ref|YP_004383113.1| - 1.2e-06 27.5 4.3 0.012 14.4 0.0 4.0 4 0 0 4 4 4 2 Protein kinase G tetratricopeptide repeat Coatomer_E PF04733.14 gi|330506685|ref|YP_004383113.1| - 2.8e-06 27.0 6.0 1.1 8.6 0.3 5.1 4 1 1 5 5 5 3 Coatomer epsilon subunit Alkyl_sulf_dimr PF14863.6 gi|330506685|ref|YP_004383113.1| - 2.8e-05 24.6 7.5 14 6.1 0.1 7.1 5 2 2 7 7 7 0 Alkyl sulfatase dimerisation Wzy_C_2 PF11846.8 gi|330506685|ref|YP_004383113.1| - 4.9e-05 23.3 6.8 0.037 13.9 0.4 5.4 5 1 2 7 7 6 1 Virulence factor membrane-bound polymerase, C-terminal MIT PF04212.18 gi|330506685|ref|YP_004383113.1| - 0.00042 20.3 20.0 8.8 6.5 0.1 10.1 11 2 1 12 12 10 0 MIT (microtubule interacting and transport) domain HrpB1_HrpK PF09613.10 gi|330506685|ref|YP_004383113.1| - 0.00054 19.6 0.4 0.31 10.7 0.1 3.9 3 0 0 3 3 3 1 Bacterial type III secretion protein (HrpB1_HrpK) TOM20_plant PF06552.12 gi|330506685|ref|YP_004383113.1| - 0.0013 18.5 0.8 11 5.8 0.0 5.5 4 3 0 4 4 4 0 Plant specific mitochondrial import receptor subunit TOM20 MAS20 PF02064.15 gi|330506685|ref|YP_004383113.1| - 0.02 15.0 0.0 8 6.6 0.0 3.8 3 0 0 3 3 3 0 MAS20 protein import receptor DUF4919 PF16266.5 gi|330506685|ref|YP_004383113.1| - 0.024 14.6 0.1 1.5 8.7 0.0 3.6 4 1 1 5 5 5 0 Domain of unknown function (DUF4919) SNAP PF14938.6 gi|330506685|ref|YP_004383113.1| - 0.026 13.9 10.0 5.4 6.3 0.1 5.8 4 2 3 7 7 7 0 Soluble NSF attachment protein, SNAP CTP-dep_RFKase PF01982.16 gi|330506686|ref|YP_004383114.1| - 1.1e-39 135.2 0.0 1.6e-39 134.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 PHP_C PF13263.6 gi|330506687|ref|YP_004383115.1| - 2.2e-12 46.5 1.3 2.2e-12 46.5 1.3 1.5 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|330506687|ref|YP_004383115.1| - 5.9e-07 29.9 0.0 8.9e-07 29.3 0.0 1.4 1 1 0 1 1 1 1 PHP domain Aconitase PF00330.20 gi|330506688|ref|YP_004383116.1| - 1.1e-102 344.4 0.0 1.2e-100 337.7 0.0 2.1 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|330506688|ref|YP_004383116.1| - 0.084 11.6 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) MTS PF05175.14 gi|330506689|ref|YP_004383117.1| - 0.014 14.9 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|330506689|ref|YP_004383117.1| - 0.093 12.1 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) LPG_synthase_TM PF03706.13 gi|330506690|ref|YP_004383118.1| - 1e-39 136.9 34.4 1.3e-39 136.6 34.4 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF5350 PF17299.2 gi|330506691|ref|YP_004383119.1| - 1.5e-25 89.4 9.1 1.7e-25 89.3 9.1 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5350) DUF5548 PF17702.1 gi|330506691|ref|YP_004383119.1| - 0.016 14.9 1.0 0.42 10.3 0.0 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5548) ThiI PF02568.14 gi|330506692|ref|YP_004383120.1| - 1.4e-59 201.0 0.2 2e-59 200.5 0.2 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|330506692|ref|YP_004383120.1| - 1.4e-16 60.9 0.0 2.8e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|330506692|ref|YP_004383120.1| - 2e-07 30.8 0.1 0.012 15.2 0.0 2.9 1 1 1 3 3 3 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|330506692|ref|YP_004383120.1| - 0.017 13.9 0.0 0.034 13.0 0.0 1.5 1 0 0 1 1 1 0 tRNA methyl transferase Multi_ubiq PF14452.6 gi|330506692|ref|YP_004383120.1| - 0.078 13.2 0.0 0.18 12.1 0.0 1.7 1 0 0 1 1 1 0 Multiubiquitin KGG PF10685.9 gi|330506693|ref|YP_004383121.1| - 1.8e-06 28.0 2.8 0.013 15.8 0.0 2.5 2 0 0 2 2 2 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|330506693|ref|YP_004383121.1| - 0.0069 16.8 6.3 0.0069 16.8 6.3 1.9 1 1 1 2 2 2 2 Small hydrophilic plant seed protein zf-H2C2 PF09337.10 gi|330506693|ref|YP_004383121.1| - 0.11 12.8 0.1 0.16 12.2 0.1 1.4 1 0 0 1 1 1 0 H2C2 zinc finger SASP PF00269.20 gi|330506693|ref|YP_004383121.1| - 0.12 12.4 7.3 0.25 11.4 0.7 2.1 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type LigD_N PF13298.6 gi|330506694|ref|YP_004383122.1| - 5.8e-40 135.8 0.0 8.2e-40 135.3 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) BPD_transp_1 PF00528.22 gi|330506695|ref|YP_004383123.1| - 0.00032 20.5 0.5 0.00041 20.1 0.5 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.21 gi|330506695|ref|YP_004383123.1| - 0.25 11.8 4.4 0.33 11.4 4.4 1.2 1 0 0 1 1 1 0 FtsX-like permease family Acylphosphatase PF00708.18 gi|330506696|ref|YP_004383124.1| - 1.1e-08 35.3 0.0 2.2e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase CitX PF03802.14 gi|330506696|ref|YP_004383124.1| - 0.068 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase YhdX PF17444.2 gi|330506696|ref|YP_004383124.1| - 2.2 8.2 3.9 3.7e+02 1.1 0.0 4.5 5 0 0 5 5 5 0 Uncharacterized YhdX-like HcyBio PF01837.16 gi|330506697|ref|YP_004383125.1| - 2.8e-110 368.4 0.0 3.2e-110 368.2 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4_6 PF12837.7 gi|330506697|ref|YP_004383125.1| - 7.8e-07 28.9 10.0 2.4e-05 24.2 3.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|330506697|ref|YP_004383125.1| - 8.5e-07 28.5 11.2 0.0042 16.8 0.5 3.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330506697|ref|YP_004383125.1| - 5.7e-06 26.3 10.9 1.2e-05 25.3 10.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330506697|ref|YP_004383125.1| - 5e-05 23.2 12.4 0.0031 17.5 3.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330506697|ref|YP_004383125.1| - 6e-05 23.1 10.0 0.00013 22.1 10.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330506697|ref|YP_004383125.1| - 0.00016 22.2 11.6 0.0013 19.3 12.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330506697|ref|YP_004383125.1| - 0.0023 18.3 14.5 0.058 13.9 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330506697|ref|YP_004383125.1| - 0.0029 17.7 10.1 0.017 15.3 10.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330506697|ref|YP_004383125.1| - 0.014 15.6 3.3 0.034 14.3 2.2 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330506697|ref|YP_004383125.1| - 0.038 14.9 10.8 0.84 10.6 3.7 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_11 PF13247.6 gi|330506697|ref|YP_004383125.1| - 0.085 13.0 3.7 0.22 11.7 3.7 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330506697|ref|YP_004383125.1| - 0.16 12.4 9.0 0.26 11.8 0.2 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330506697|ref|YP_004383125.1| - 0.52 11.2 6.5 2 9.3 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330506697|ref|YP_004383125.1| - 0.99 10.2 14.7 8.2 7.2 0.1 4.2 3 1 1 4 4 4 0 4Fe-4S single cluster domain GMP_synt_C PF00958.22 gi|330506698|ref|YP_004383126.1| - 2.1e-32 111.0 0.0 4.9e-32 109.8 0.0 1.7 1 1 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|330506698|ref|YP_004383126.1| - 7.1e-10 38.4 0.0 1.6e-06 27.5 0.0 2.3 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|330506698|ref|YP_004383126.1| - 1.7e-05 24.4 0.0 0.00018 21.1 0.0 2.0 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|330506698|ref|YP_004383126.1| - 0.00025 20.0 0.1 0.017 14.0 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase ThiI PF02568.14 gi|330506698|ref|YP_004383126.1| - 0.00046 19.8 0.0 0.0018 17.9 0.0 2.0 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|330506698|ref|YP_004383126.1| - 0.015 15.0 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase ATP_bind_3 PF01171.20 gi|330506698|ref|YP_004383126.1| - 0.086 12.6 0.0 0.35 10.6 0.0 1.8 2 0 0 2 2 2 0 PP-loop family DHNA PF04038.12 gi|330506699|ref|YP_004383127.1| - 1.5e-21 76.9 0.0 1.6e-21 76.8 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase CDP-OH_P_transf PF01066.21 gi|330506700|ref|YP_004383128.1| - 1.1e-12 48.5 1.3 1.1e-12 48.5 1.3 3.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF3488 PF11992.8 gi|330506700|ref|YP_004383128.1| - 0.2 10.6 16.5 0.0077 15.2 10.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3488) Ost5 PF05251.12 gi|330506700|ref|YP_004383128.1| - 8.3 6.8 12.9 20 5.5 0.2 3.4 2 1 1 3 3 3 0 Oligosaccharyltransferase subunit 5 PS_Dcarbxylase PF02666.15 gi|330506701|ref|YP_004383129.1| - 1.2e-25 90.2 0.3 3.8e-22 78.8 0.1 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase Peptidase_M23 PF01551.22 gi|330506701|ref|YP_004383129.1| - 0.005 17.0 0.0 0.35 11.1 0.0 3.3 1 1 2 3 3 3 1 Peptidase family M23 RnfC_N PF13375.6 gi|330506701|ref|YP_004383129.1| - 0.0085 16.0 0.8 1.3 9.0 0.0 3.0 1 1 2 3 3 3 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 gi|330506701|ref|YP_004383129.1| - 0.011 15.6 0.0 8.2 6.3 0.0 3.4 2 1 1 3 3 3 0 Biotin-requiring enzyme Apocytochr_F_C PF01333.19 gi|330506701|ref|YP_004383129.1| - 0.024 14.7 0.0 2.3 8.3 0.0 2.3 1 1 1 2 2 2 0 Apocytochrome F, C-terminal Exosortase_EpsH PF09721.10 gi|330506702|ref|YP_004383130.1| - 1.7e-09 37.6 28.0 2.2e-09 37.2 28.0 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) NADH-u_ox-rdase PF10785.9 gi|330506702|ref|YP_004383130.1| - 1 10.1 3.5 1.9 9.3 2.8 2.0 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit WTF PF03303.13 gi|330506702|ref|YP_004383130.1| - 5.3 6.7 6.8 0.44 10.2 1.7 1.8 2 0 0 2 2 2 0 WTF protein Peptidase_S8 PF00082.22 gi|330506703|ref|YP_004383131.1| - 1.6e-50 172.1 4.6 4.5e-50 170.6 4.6 1.8 1 1 0 1 1 1 1 Subtilase family PPC PF04151.15 gi|330506703|ref|YP_004383131.1| - 0.0023 19.0 0.7 0.0023 19.0 0.7 4.2 4 0 0 4 4 4 1 Bacterial pre-peptidase C-terminal domain DUF4625 PF15418.6 gi|330506703|ref|YP_004383131.1| - 0.017 15.3 0.0 0.046 14.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) Inhibitor_I9 PF05922.16 gi|330506703|ref|YP_004383131.1| - 0.023 15.3 0.0 0.049 14.3 0.0 1.5 1 0 0 1 1 1 0 Peptidase inhibitor I9 Radical_SAM PF04055.21 gi|330506704|ref|YP_004383132.1| - 3.3e-27 95.9 0.0 4.4e-27 95.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|330506704|ref|YP_004383132.1| - 0.017 15.2 0.0 0.04 14.0 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|330506704|ref|YP_004383132.1| - 0.17 12.2 0.0 0.33 11.2 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain HD PF01966.22 gi|330506705|ref|YP_004383133.1| - 2e-11 44.2 3.0 1.5e-10 41.3 0.8 2.1 2 0 0 2 2 2 2 HD domain MacB_PCD PF12704.7 gi|330506706|ref|YP_004383134.1| - 1.1e-13 52.0 0.2 2e-13 51.1 0.2 1.5 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|330506706|ref|YP_004383134.1| - 4.8e-13 49.4 6.0 4.8e-13 49.4 6.0 2.9 3 0 0 3 3 3 1 FtsX-like permease family ATS3 PF06232.11 gi|330506706|ref|YP_004383134.1| - 0.14 12.0 0.0 14 5.6 0.0 2.2 2 0 0 2 2 2 0 Embryo-specific protein 3, (ATS3) ABC2_membrane_3 PF12698.7 gi|330506706|ref|YP_004383134.1| - 1.9 7.5 14.7 2.6 7.1 14.7 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein FtsX PF02687.21 gi|330506707|ref|YP_004383135.1| - 4.2e-17 62.4 3.3 4.2e-17 62.4 3.3 3.0 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|330506707|ref|YP_004383135.1| - 1.8e-14 54.6 0.9 2.6e-14 54.0 0.9 1.2 1 0 0 1 1 1 1 MacB-like periplasmic core domain UPF0489 PF12640.7 gi|330506708|ref|YP_004383136.1| - 4.2e-06 27.1 0.0 6e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 UPF0489 domain DUF3288 PF11691.8 gi|330506709|ref|YP_004383137.1| - 0.12 12.4 0.0 0.37 10.9 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3288) DUF1646 PF07854.12 gi|330506710|ref|YP_004383138.1| - 1.5e-112 376.4 25.7 1.8e-112 376.2 25.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Abhydrolase_9_N PF15420.6 gi|330506710|ref|YP_004383138.1| - 2 8.4 7.7 0.95 9.4 2.7 2.6 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus DUF3180 PF11377.8 gi|330506710|ref|YP_004383138.1| - 4.2 7.5 13.4 0.16 12.1 5.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3180) CMD PF02627.20 gi|330506711|ref|YP_004383139.1| - 6.4e-13 48.6 0.4 7.2e-13 48.4 0.4 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family IF2_N PF04760.15 gi|330506711|ref|YP_004383139.1| - 0.03 14.1 1.0 0.37 10.7 0.1 2.6 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region CTU2 PF10288.9 gi|330506711|ref|YP_004383139.1| - 0.085 13.1 0.4 0.2 11.9 0.3 1.7 1 1 1 2 2 2 0 Cytoplasmic tRNA 2-thiolation protein 2 GAGA PF09237.11 gi|330506711|ref|YP_004383139.1| - 0.098 12.5 1.2 0.46 10.3 0.1 2.1 2 0 0 2 2 2 0 GAGA factor UvrA_inter PF17760.1 gi|330506712|ref|YP_004383140.1| - 8e-30 103.1 0.3 3.3e-29 101.1 0.2 2.1 2 0 0 2 2 2 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|330506712|ref|YP_004383140.1| - 8.9e-28 96.8 0.0 4.9e-26 91.3 0.0 2.9 2 0 0 2 2 2 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|330506712|ref|YP_004383140.1| - 4.7e-21 75.7 0.1 2e-08 34.8 0.1 5.0 4 1 0 4 4 4 3 ABC transporter AAA_21 PF13304.6 gi|330506712|ref|YP_004383140.1| - 1.3e-10 41.6 3.0 0.012 15.4 0.0 4.8 5 0 0 5 5 5 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330506712|ref|YP_004383140.1| - 2.5e-10 40.2 0.0 0.066 12.6 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|330506712|ref|YP_004383140.1| - 2.1e-08 34.7 0.0 0.02 15.3 0.0 3.7 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 gi|330506712|ref|YP_004383140.1| - 2.8e-08 33.4 0.2 0.0062 16.2 0.0 2.8 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|330506712|ref|YP_004383140.1| - 2.1e-06 27.5 0.0 0.03 13.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|330506712|ref|YP_004383140.1| - 3.4e-06 27.7 0.7 0.061 13.8 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|330506712|ref|YP_004383140.1| - 6e-06 26.6 0.2 0.29 11.4 0.0 3.9 4 0 0 4 4 3 2 AAA domain AAA_15 PF13175.6 gi|330506712|ref|YP_004383140.1| - 1.4e-05 25.0 0.1 0.84 9.3 0.0 3.9 4 0 0 4 4 4 1 AAA ATPase domain BCA_ABC_TP_C PF12399.8 gi|330506712|ref|YP_004383140.1| - 6.2e-05 22.8 3.6 0.011 15.6 0.4 2.8 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter Viral_helicase1 PF01443.18 gi|330506712|ref|YP_004383140.1| - 7.9e-05 22.5 0.0 0.15 11.7 0.0 2.5 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase RsgA_GTPase PF03193.16 gi|330506712|ref|YP_004383140.1| - 0.0001 22.2 0.0 0.48 10.3 0.0 2.7 2 0 0 2 2 2 2 RsgA GTPase AAA_14 PF13173.6 gi|330506712|ref|YP_004383140.1| - 0.00014 21.9 0.0 0.84 9.7 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.6 gi|330506712|ref|YP_004383140.1| - 0.00018 22.1 0.1 0.34 11.4 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|330506712|ref|YP_004383140.1| - 0.0002 21.6 0.0 0.82 9.8 0.0 2.9 3 0 0 3 3 2 2 AAA domain APS_kinase PF01583.20 gi|330506712|ref|YP_004383140.1| - 0.00029 20.8 1.1 0.93 9.4 0.0 3.2 4 0 0 4 4 2 2 Adenylylsulphate kinase ATPase_2 PF01637.18 gi|330506712|ref|YP_004383140.1| - 0.00033 20.6 0.1 0.13 12.1 0.0 2.9 3 0 0 3 3 2 1 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|330506712|ref|YP_004383140.1| - 0.00041 19.8 0.1 0.33 10.3 0.0 3.0 3 0 0 3 3 3 1 KaiC DUF2075 PF09848.9 gi|330506712|ref|YP_004383140.1| - 0.00051 19.4 0.0 0.48 9.6 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) DnaJ_CXXCXGXG PF00684.19 gi|330506712|ref|YP_004383140.1| - 0.00074 19.8 5.7 0.039 14.3 0.3 3.7 3 1 0 3 3 3 1 DnaJ central domain NTPase_1 PF03266.15 gi|330506712|ref|YP_004383140.1| - 0.00081 19.3 1.1 9.8 6.1 0.0 3.8 3 0 0 3 3 3 0 NTPase cobW PF02492.19 gi|330506712|ref|YP_004383140.1| - 0.00088 18.9 0.4 0.51 9.9 0.1 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|330506712|ref|YP_004383140.1| - 0.00098 18.9 0.3 2.2 8.0 0.0 3.2 3 0 0 3 3 3 1 AAA domain T2SSE PF00437.20 gi|330506712|ref|YP_004383140.1| - 0.0024 17.0 0.1 1.6 7.7 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein NACHT PF05729.12 gi|330506712|ref|YP_004383140.1| - 0.0032 17.4 0.1 1.8 8.4 0.0 2.8 3 0 0 3 3 3 1 NACHT domain RNA_helicase PF00910.22 gi|330506712|ref|YP_004383140.1| - 0.0087 16.4 0.0 4.5 7.7 0.0 3.1 4 0 0 4 4 2 1 RNA helicase AAA_30 PF13604.6 gi|330506712|ref|YP_004383140.1| - 0.011 15.4 0.5 13 5.5 0.0 3.4 4 0 0 4 4 3 0 AAA domain NB-ARC PF00931.22 gi|330506712|ref|YP_004383140.1| - 0.037 13.2 0.0 11 5.1 0.0 3.2 3 0 0 3 3 3 0 NB-ARC domain AAA_28 PF13521.6 gi|330506712|ref|YP_004383140.1| - 0.044 14.0 0.1 5.1 7.3 0.0 2.9 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|330506712|ref|YP_004383140.1| - 0.066 12.2 0.0 11 4.9 0.0 2.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_7 PF12775.7 gi|330506712|ref|YP_004383140.1| - 0.13 11.7 0.0 18 4.8 0.0 2.9 3 0 0 3 3 3 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|330506712|ref|YP_004383140.1| - 0.14 12.2 0.1 31 4.7 0.0 3.4 3 0 0 3 3 3 0 50S ribosome-binding GTPase CbiA PF01656.23 gi|330506712|ref|YP_004383140.1| - 0.21 11.7 1.0 29 4.7 0.0 3.5 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain DAP3 PF10236.9 gi|330506712|ref|YP_004383140.1| - 0.27 10.3 0.7 10 5.2 0.1 2.6 3 0 0 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 Anti-TRAP PF15777.5 gi|330506712|ref|YP_004383140.1| - 0.61 10.1 9.5 6.2 6.9 0.4 3.8 4 0 0 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein Peripla_BP_2 PF01497.18 gi|330506714|ref|YP_004383142.1| - 1.1e-33 116.7 0.0 1.8e-33 116.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_25 PF13649.6 gi|330506715|ref|YP_004383143.1| - 3.3e-12 47.0 0.0 6.1e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330506715|ref|YP_004383143.1| - 4.5e-09 36.3 0.0 6.3e-09 35.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330506715|ref|YP_004383143.1| - 1.4e-08 35.3 0.0 2.5e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330506715|ref|YP_004383143.1| - 4e-06 27.5 0.0 1.3e-05 25.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|330506715|ref|YP_004383143.1| - 1.6e-05 24.5 0.0 2.5e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|330506715|ref|YP_004383143.1| - 3.2e-05 23.4 0.0 4.6e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|330506715|ref|YP_004383143.1| - 5.8e-05 22.6 0.0 7.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.20 gi|330506715|ref|YP_004383143.1| - 6.9e-05 22.0 0.0 0.00011 21.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|330506715|ref|YP_004383143.1| - 0.00011 21.7 0.1 0.00017 21.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|330506715|ref|YP_004383143.1| - 0.0002 21.2 0.0 0.00028 20.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|330506715|ref|YP_004383143.1| - 0.00023 20.9 0.0 0.00034 20.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_16 PF10294.9 gi|330506715|ref|YP_004383143.1| - 0.00038 20.2 0.0 0.00056 19.7 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase tRNA_U5-meth_tr PF05958.11 gi|330506715|ref|YP_004383143.1| - 0.00061 18.9 0.0 0.00089 18.3 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Met_10 PF02475.16 gi|330506715|ref|YP_004383143.1| - 0.00067 19.5 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein GidB PF02527.15 gi|330506715|ref|YP_004383143.1| - 0.00082 18.7 0.0 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_15 PF09445.10 gi|330506715|ref|YP_004383143.1| - 0.0011 18.6 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|330506715|ref|YP_004383143.1| - 0.0014 18.4 0.0 0.0021 17.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|330506715|ref|YP_004383143.1| - 0.0035 16.7 0.0 0.0053 16.1 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|330506715|ref|YP_004383143.1| - 0.0059 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain SAM_MT PF04445.13 gi|330506715|ref|YP_004383143.1| - 0.13 11.7 0.2 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 Putative SAM-dependent methyltransferase Methyltr_RsmB-F PF01189.17 gi|330506715|ref|YP_004383143.1| - 0.16 11.6 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DREV PF05219.12 gi|330506715|ref|YP_004383143.1| - 0.18 10.9 0.0 0.24 10.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Band_7 PF01145.25 gi|330506716|ref|YP_004383144.1| - 1.2e-33 116.6 1.1 1.5e-33 116.3 1.1 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|330506716|ref|YP_004383144.1| - 0.0014 18.4 0.1 0.0063 16.2 0.1 2.0 2 0 0 2 2 2 1 SPFH domain-Band 7 family Maelstrom PF13017.6 gi|330506716|ref|YP_004383144.1| - 0.063 12.9 0.0 0.087 12.5 0.0 1.3 1 0 0 1 1 1 0 piRNA pathway germ-plasm component Herpes_UL31 PF02718.14 gi|330506716|ref|YP_004383144.1| - 0.1 11.5 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus UL31-like protein Arc_PepC PF06819.11 gi|330506716|ref|YP_004383144.1| - 0.37 10.9 3.3 11 6.2 0.1 3.1 2 1 1 3 3 3 0 Archaeal Peptidase A24 C-terminal Domain FecCD PF01032.18 gi|330506717|ref|YP_004383145.1| - 1e-89 300.7 32.7 1.3e-89 300.3 32.7 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|330506717|ref|YP_004383145.1| - 0.0077 15.8 22.4 0.011 15.2 22.4 1.3 1 0 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.27 gi|330506718|ref|YP_004383146.1| - 7.3e-34 117.2 0.0 1.1e-33 116.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330506718|ref|YP_004383146.1| - 1.1e-09 38.6 0.1 1.1e-05 25.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330506718|ref|YP_004383146.1| - 3.9e-07 29.7 0.5 5.9e-05 22.6 0.5 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|330506718|ref|YP_004383146.1| - 1.8e-06 28.6 0.0 3e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|330506718|ref|YP_004383146.1| - 4e-06 26.5 0.0 8.3e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|330506718|ref|YP_004383146.1| - 5.5e-05 23.1 0.0 5.5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|330506718|ref|YP_004383146.1| - 0.00025 21.5 0.0 0.00034 21.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|330506718|ref|YP_004383146.1| - 0.00025 20.0 0.9 0.41 9.4 0.0 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|330506718|ref|YP_004383146.1| - 0.0031 17.2 0.1 0.01 15.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain RNA12 PF10443.9 gi|330506718|ref|YP_004383146.1| - 0.0034 16.2 0.5 0.019 13.7 0.0 1.9 2 0 0 2 2 2 1 RNA12 protein Zeta_toxin PF06414.12 gi|330506718|ref|YP_004383146.1| - 0.0037 16.6 0.0 0.0057 15.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin Rad17 PF03215.15 gi|330506718|ref|YP_004383146.1| - 0.0037 17.2 0.1 0.015 15.2 0.0 1.8 2 0 0 2 2 2 1 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|330506718|ref|YP_004383146.1| - 0.0041 16.5 0.0 0.012 15.1 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_27 PF13514.6 gi|330506718|ref|YP_004383146.1| - 0.0069 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|330506718|ref|YP_004383146.1| - 0.011 16.0 0.7 0.13 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|330506718|ref|YP_004383146.1| - 0.013 15.4 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|330506718|ref|YP_004383146.1| - 0.017 15.3 0.0 0.053 13.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|330506718|ref|YP_004383146.1| - 0.019 13.6 0.0 2 7.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|330506718|ref|YP_004383146.1| - 0.026 13.7 0.7 0.26 10.4 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain SRP54 PF00448.22 gi|330506718|ref|YP_004383146.1| - 0.03 13.9 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|330506718|ref|YP_004383146.1| - 0.038 14.3 0.5 0.11 12.8 0.3 2.0 2 1 0 2 2 1 0 AAA domain HSM3_N PF18795.1 gi|330506718|ref|YP_004383146.1| - 0.038 13.4 0.4 0.057 12.8 0.4 1.2 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain DUF815 PF05673.13 gi|330506718|ref|YP_004383146.1| - 0.065 12.4 0.0 0.18 10.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) MeaB PF03308.16 gi|330506718|ref|YP_004383146.1| - 0.067 12.2 0.1 0.28 10.1 0.1 1.9 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|330506718|ref|YP_004383146.1| - 0.076 13.0 0.1 1.1 9.3 0.1 2.5 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|330506718|ref|YP_004383146.1| - 0.15 12.0 0.2 0.34 10.8 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|330506718|ref|YP_004383146.1| - 0.15 12.1 0.1 0.63 10.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|330506718|ref|YP_004383146.1| - 0.16 12.4 0.1 0.52 10.7 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Flavin_Reduct PF01613.18 gi|330506719|ref|YP_004383147.1| - 2e-18 66.9 0.0 2.6e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.12 gi|330506719|ref|YP_004383147.1| - 0.00035 20.4 0.0 0.00065 19.5 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF447) CbiA PF01656.23 gi|330506720|ref|YP_004383148.1| - 9.2e-16 58.1 0.0 1.4e-15 57.5 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|330506720|ref|YP_004383148.1| - 1.5e-08 34.8 0.0 2.2e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|330506720|ref|YP_004383148.1| - 1.7e-08 34.2 0.3 4.8e-07 29.5 0.0 2.6 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|330506720|ref|YP_004383148.1| - 9.3e-08 31.6 2.7 4.7e-07 29.3 0.1 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase APS_kinase PF01583.20 gi|330506720|ref|YP_004383148.1| - 3.1e-07 30.4 0.0 6.8e-07 29.3 0.0 1.6 1 1 0 1 1 1 1 Adenylylsulphate kinase CBP_BcsQ PF06564.12 gi|330506720|ref|YP_004383148.1| - 5e-07 29.4 0.0 0.00051 19.6 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|330506720|ref|YP_004383148.1| - 1.2e-06 28.0 0.0 0.0011 18.4 0.0 2.1 2 0 0 2 2 2 2 ATPase MipZ Fer4_NifH PF00142.18 gi|330506720|ref|YP_004383148.1| - 3.3e-06 26.8 3.1 0.00016 21.3 3.1 2.2 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 gi|330506720|ref|YP_004383148.1| - 3.1e-05 23.8 0.0 0.0026 17.6 0.0 2.3 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop TrkA_N PF02254.18 gi|330506720|ref|YP_004383148.1| - 4.5e-05 23.7 0.4 0.032 14.5 0.0 2.5 2 1 0 2 2 2 1 TrkA-N domain KTI12 PF08433.10 gi|330506720|ref|YP_004383148.1| - 0.0001 21.9 0.0 0.00018 21.1 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 DUF87 PF01935.17 gi|330506720|ref|YP_004383148.1| - 0.00011 22.4 0.1 0.00027 21.1 0.1 1.7 1 1 0 1 1 1 1 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|330506720|ref|YP_004383148.1| - 0.00017 21.0 0.0 0.0012 18.2 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin SRP54 PF00448.22 gi|330506720|ref|YP_004383148.1| - 0.00017 21.3 0.0 0.00097 18.8 0.0 2.1 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|330506720|ref|YP_004383148.1| - 0.00057 19.7 0.1 0.0017 18.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|330506720|ref|YP_004383148.1| - 0.0013 19.3 0.1 0.0034 17.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain GTP_EFTU PF00009.27 gi|330506720|ref|YP_004383148.1| - 0.0013 18.3 0.2 0.079 12.5 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 gi|330506720|ref|YP_004383148.1| - 0.0014 19.1 0.1 0.0028 18.2 0.1 1.5 1 1 0 1 1 1 1 ABC transporter RNA_helicase PF00910.22 gi|330506720|ref|YP_004383148.1| - 0.0019 18.6 0.0 0.0094 16.3 0.0 2.1 2 1 0 2 2 2 1 RNA helicase MMR_HSR1 PF01926.23 gi|330506720|ref|YP_004383148.1| - 0.0022 18.0 0.1 0.036 14.2 0.1 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|330506720|ref|YP_004383148.1| - 0.0024 18.0 0.0 0.0059 16.8 0.0 1.6 2 0 0 2 2 1 1 AAA domain cobW PF02492.19 gi|330506720|ref|YP_004383148.1| - 0.0086 15.7 1.8 1 8.9 0.3 2.7 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ATPase PF06745.13 gi|330506720|ref|YP_004383148.1| - 0.011 15.1 0.2 0.02 14.3 0.2 1.6 1 1 0 1 1 1 0 KaiC AAA_25 PF13481.6 gi|330506720|ref|YP_004383148.1| - 0.013 15.1 0.0 0.081 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain FR47 PF08445.10 gi|330506720|ref|YP_004383148.1| - 0.017 15.0 0.0 0.06 13.3 0.0 1.9 2 0 0 2 2 1 0 FR47-like protein TrwB_AAD_bind PF10412.9 gi|330506720|ref|YP_004383148.1| - 0.021 13.8 0.0 0.038 12.9 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MeaB PF03308.16 gi|330506720|ref|YP_004383148.1| - 0.043 12.8 0.2 0.091 11.7 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PglD_N PF17836.1 gi|330506720|ref|YP_004383148.1| - 0.044 14.4 0.4 0.26 12.0 0.0 2.5 3 1 1 4 4 2 0 PglD N-terminal domain T2SSE PF00437.20 gi|330506720|ref|YP_004383148.1| - 0.046 12.8 0.1 0.088 11.8 0.1 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|330506720|ref|YP_004383148.1| - 0.048 13.4 0.1 0.1 12.3 0.1 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|330506720|ref|YP_004383148.1| - 0.05 14.0 0.1 0.094 13.1 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|330506720|ref|YP_004383148.1| - 0.052 13.8 0.1 0.1 12.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|330506720|ref|YP_004383148.1| - 0.069 12.4 0.0 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Thymidylate_kin PF02223.17 gi|330506720|ref|YP_004383148.1| - 0.075 12.7 0.0 0.37 10.4 0.0 2.1 3 0 0 3 3 3 0 Thymidylate kinase NTPase_1 PF03266.15 gi|330506720|ref|YP_004383148.1| - 0.082 12.8 0.0 0.21 11.5 0.0 1.8 2 0 0 2 2 2 0 NTPase KAP_NTPase PF07693.14 gi|330506720|ref|YP_004383148.1| - 0.096 11.9 0.1 0.11 11.7 0.1 1.4 1 1 0 1 1 1 0 KAP family P-loop domain RsgA_GTPase PF03193.16 gi|330506720|ref|YP_004383148.1| - 0.1 12.5 0.1 1.7 8.5 0.1 2.2 2 0 0 2 2 2 0 RsgA GTPase ResIII PF04851.15 gi|330506720|ref|YP_004383148.1| - 0.12 12.4 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit SWI2_SNF2 PF18766.1 gi|330506720|ref|YP_004383148.1| - 0.15 11.7 0.1 0.44 10.2 0.0 1.9 2 1 0 2 2 2 0 SWI2/SNF2 ATPase SBP_bac_5 PF00496.22 gi|330506721|ref|YP_004383149.1| - 1.5e-76 257.8 2.8 2.1e-76 257.4 2.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle dTDP_sugar_isom PF00908.17 gi|330506722|ref|YP_004383150.1| - 4.2e-18 65.6 0.0 4.9e-18 65.4 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.11 gi|330506722|ref|YP_004383150.1| - 2.6e-10 40.1 0.0 3.8e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.11 gi|330506722|ref|YP_004383150.1| - 0.0021 17.7 0.1 0.63 9.8 0.0 2.2 2 0 0 2 2 2 2 Cupin domain E1-E2_ATPase PF00122.20 gi|330506723|ref|YP_004383151.1| - 4.3e-47 160.0 1.2 1.2e-46 158.5 1.2 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|330506723|ref|YP_004383151.1| - 1.6e-37 129.9 0.1 2.9e-37 129.0 0.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|330506723|ref|YP_004383151.1| - 0.00017 21.4 0.1 0.094 12.4 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DUF1056 PF06341.11 gi|330506723|ref|YP_004383151.1| - 0.045 14.1 2.3 1.2 9.5 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1056) HAD PF12710.7 gi|330506723|ref|YP_004383151.1| - 0.14 12.5 0.0 0.49 10.8 0.0 2.0 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|330506723|ref|YP_004383151.1| - 0.17 12.0 0.0 0.36 10.9 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase FmdE PF02663.14 gi|330506724|ref|YP_004383152.1| - 2.6e-17 63.1 0.0 1.8e-14 53.9 0.0 2.5 2 1 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ABC_tran PF00005.27 gi|330506725|ref|YP_004383153.1| - 1.7e-28 99.8 0.0 2.7e-28 99.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330506725|ref|YP_004383153.1| - 3.6e-12 46.7 0.0 2.6e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|330506725|ref|YP_004383153.1| - 5.3e-10 39.9 0.0 1.1e-09 38.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|330506725|ref|YP_004383153.1| - 0.00052 20.6 0.0 0.001 19.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|330506725|ref|YP_004383153.1| - 0.0018 18.1 0.0 0.42 10.3 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|330506725|ref|YP_004383153.1| - 0.0029 17.3 0.0 0.0062 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|330506725|ref|YP_004383153.1| - 0.018 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|330506725|ref|YP_004383153.1| - 0.034 14.6 0.0 0.17 12.3 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|330506725|ref|YP_004383153.1| - 0.037 13.8 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|330506725|ref|YP_004383153.1| - 0.038 13.4 0.0 0.34 10.3 0.0 2.1 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit RNA_helicase PF00910.22 gi|330506725|ref|YP_004383153.1| - 0.043 14.2 0.0 0.09 13.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.6 gi|330506725|ref|YP_004383153.1| - 0.061 13.7 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|330506725|ref|YP_004383153.1| - 0.062 13.6 0.0 0.11 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|330506725|ref|YP_004383153.1| - 0.071 11.7 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|330506725|ref|YP_004383153.1| - 0.08 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|330506725|ref|YP_004383153.1| - 0.1 12.9 0.0 0.26 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|330506725|ref|YP_004383153.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Roc PF08477.13 gi|330506725|ref|YP_004383153.1| - 0.16 12.2 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ABC2_membrane PF01061.24 gi|330506726|ref|YP_004383154.1| - 1.3e-15 57.4 0.9 1.6e-15 57.1 0.9 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330506726|ref|YP_004383154.1| - 2.3e-05 23.7 0.2 2.8e-05 23.4 0.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|330506727|ref|YP_004383155.1| - 5.1e-16 58.7 8.8 5.1e-16 58.7 8.8 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330506727|ref|YP_004383155.1| - 8.3e-07 28.4 17.1 9.7e-07 28.2 17.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|330506727|ref|YP_004383155.1| - 0.0011 18.3 12.1 0.0014 18.0 12.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein CoxIIa PF08113.11 gi|330506727|ref|YP_004383155.1| - 0.12 12.2 4.8 0.13 12.1 0.2 2.8 2 1 1 3 3 3 0 Cytochrome c oxidase subunit IIa family ApbA_C PF08546.11 gi|330506728|ref|YP_004383156.1| - 8.3e-35 119.7 0.1 1.4e-34 118.9 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|330506728|ref|YP_004383156.1| - 5.1e-21 74.9 0.0 1.1e-20 73.8 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 gi|330506728|ref|YP_004383156.1| - 0.045 14.6 0.0 0.15 12.9 0.0 1.9 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold EamA PF00892.20 gi|330506729|ref|YP_004383157.1| - 7e-08 32.7 39.4 6.9e-07 29.5 11.9 2.9 3 0 0 3 3 3 2 EamA-like transporter family Acylphosphatase PF00708.18 gi|330506730|ref|YP_004383158.1| - 3.1e-06 27.5 0.0 3.4e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Acylphosphatase OrfB_Zn_ribbon PF07282.11 gi|330506731|ref|YP_004383159.1| - 7.3e-22 77.1 0.1 2.6e-21 75.3 0.1 2.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330506731|ref|YP_004383159.1| - 4.5e-07 30.1 0.5 4.5e-07 30.1 0.5 1.8 2 0 0 2 2 2 1 Probable transposase HypA PF01155.19 gi|330506731|ref|YP_004383159.1| - 0.092 12.8 0.1 0.26 11.3 0.1 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_2 PF13923.6 gi|330506731|ref|YP_004383159.1| - 0.82 9.6 4.4 1.6 8.6 4.4 1.5 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF4337 PF14235.6 gi|330506731|ref|YP_004383159.1| - 1.1 9.3 3.2 23 5.1 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) Rubrerythrin PF02915.17 gi|330506732|ref|YP_004383160.1| - 2.7e-07 31.0 0.5 3.3e-07 30.8 0.5 1.2 1 0 0 1 1 1 1 Rubrerythrin Mn_catalase PF05067.12 gi|330506732|ref|YP_004383160.1| - 1.7e-05 23.9 0.1 2e-05 23.7 0.1 1.0 1 0 0 1 1 1 1 Manganese containing catalase COQ7 PF03232.13 gi|330506732|ref|YP_004383160.1| - 0.0001 22.1 0.2 0.00014 21.7 0.2 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 DUF2383 PF09537.10 gi|330506732|ref|YP_004383160.1| - 0.00078 19.8 0.2 0.00099 19.4 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|330506732|ref|YP_004383160.1| - 0.0048 16.8 0.2 0.0059 16.5 0.2 1.2 1 0 0 1 1 1 1 Ferritin-like domain TetR_C_35 PF18556.1 gi|330506732|ref|YP_004383160.1| - 0.0069 16.5 0.1 0.011 15.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial Tetracyclin repressor, C-terminal domain SDH_sah PF01972.16 gi|330506735|ref|YP_004383163.1| - 1.1e-106 356.0 0.8 1.3e-106 355.8 0.8 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|330506735|ref|YP_004383163.1| - 0.00016 21.6 0.3 0.00062 19.7 0.1 1.9 2 0 0 2 2 2 1 Clp protease ECH_1 PF00378.20 gi|330506735|ref|YP_004383163.1| - 0.0075 15.6 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|330506735|ref|YP_004383163.1| - 0.019 14.9 0.0 0.045 13.7 0.0 1.6 1 0 0 1 1 1 0 Peptidase family S49 Putative_PNPOx PF01243.20 gi|330506736|ref|YP_004383164.1| - 3.5e-15 55.9 0.0 4.3e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.7 gi|330506736|ref|YP_004383164.1| - 0.083 13.5 0.0 0.13 12.9 0.0 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase SPOUT_MTase_2 PF14419.6 gi|330506736|ref|YP_004383164.1| - 0.15 11.4 0.0 11 5.4 0.0 2.1 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP GATase_3 PF07685.14 gi|330506737|ref|YP_004383165.1| - 2.1e-41 141.7 0.0 3.4e-41 141.0 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|330506737|ref|YP_004383165.1| - 1.9e-16 60.5 0.1 4e-11 43.1 0.0 2.4 1 1 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|330506737|ref|YP_004383165.1| - 1.4e-15 57.4 0.0 2.3e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SNO PF01174.19 gi|330506737|ref|YP_004383165.1| - 0.00084 19.2 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family MobB PF03205.14 gi|330506737|ref|YP_004383165.1| - 0.016 15.1 0.0 0.051 13.5 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Peptidase_S51 PF03575.17 gi|330506737|ref|YP_004383165.1| - 0.019 14.6 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 Fer4_NifH PF00142.18 gi|330506738|ref|YP_004383166.1| - 3.8e-90 302.0 0.1 4.3e-90 301.8 0.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|330506738|ref|YP_004383166.1| - 1.3e-09 38.2 0.0 2.3e-09 37.4 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|330506738|ref|YP_004383166.1| - 1.7e-09 37.5 0.0 3.7e-09 36.4 0.0 1.5 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|330506738|ref|YP_004383166.1| - 1.4e-08 34.8 0.1 3e-08 33.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|330506738|ref|YP_004383166.1| - 6.5e-07 28.8 0.6 1.1e-06 28.1 0.3 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|330506738|ref|YP_004383166.1| - 0.00031 20.1 0.1 0.005 16.2 0.0 2.2 2 0 0 2 2 2 1 ATPase MipZ MeaB PF03308.16 gi|330506738|ref|YP_004383166.1| - 0.0013 17.8 0.3 0.0017 17.4 0.3 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|330506738|ref|YP_004383166.1| - 0.0024 17.6 0.0 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|330506738|ref|YP_004383166.1| - 0.0043 17.3 0.0 0.97 9.7 0.0 2.6 2 1 1 3 3 3 1 AAA domain ATP_bind_1 PF03029.17 gi|330506738|ref|YP_004383166.1| - 0.012 15.4 0.2 4.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|330506738|ref|YP_004383166.1| - 0.013 15.2 0.1 0.027 14.1 0.1 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF87 PF01935.17 gi|330506738|ref|YP_004383166.1| - 0.016 15.3 0.1 0.035 14.2 0.1 1.5 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_25 PF13481.6 gi|330506738|ref|YP_004383166.1| - 0.023 14.2 0.7 0.054 13.1 0.0 1.9 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|330506738|ref|YP_004383166.1| - 0.045 14.1 0.1 0.44 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|330506738|ref|YP_004383166.1| - 0.082 12.6 0.2 0.13 12.0 0.2 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|330506738|ref|YP_004383166.1| - 0.18 11.0 0.1 0.27 10.4 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|330506738|ref|YP_004383166.1| - 0.19 12.1 0.0 0.65 10.4 0.0 1.9 3 0 0 3 3 2 0 RNA helicase S-layer PF07752.11 gi|330506739|ref|YP_004383167.1| - 1.9e-132 440.1 4.8 8.3e-82 274.1 1.8 2.3 2 0 0 2 2 2 2 S-layer protein FlgD_ig PF13860.6 gi|330506739|ref|YP_004383167.1| - 0.089 12.7 0.1 0.4 10.6 0.0 2.2 2 0 0 2 2 2 0 FlgD Ig-like domain IGPD PF00475.18 gi|330506740|ref|YP_004383168.1| - 5.4e-29 101.3 0.1 6.7e-29 101.1 0.1 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Ribosomal_S9 PF00380.19 gi|330506740|ref|YP_004383168.1| - 0.13 12.8 0.2 2.1 8.9 0.0 2.3 1 1 1 2 2 2 0 Ribosomal protein S9/S16 Acetyltransf_3 PF13302.7 gi|330506741|ref|YP_004383169.1| - 2.3e-27 96.3 0.1 2.8e-27 96.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|330506741|ref|YP_004383169.1| - 3.6e-08 33.7 0.1 4.6e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|330506741|ref|YP_004383169.1| - 4.2e-08 33.5 0.0 4.8e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|330506741|ref|YP_004383169.1| - 5.3e-05 22.9 0.0 0.00019 21.1 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|330506742|ref|YP_004383170.1| - 1.1e-12 48.3 0.0 1.4e-12 48.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|330506742|ref|YP_004383170.1| - 3.1e-10 40.3 0.0 3.9e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|330506742|ref|YP_004383170.1| - 1.8e-08 34.7 0.0 2.7e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|330506742|ref|YP_004383170.1| - 1.7e-07 32.0 0.0 2e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330506742|ref|YP_004383170.1| - 3.3e-05 23.8 0.0 4.7e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|330506742|ref|YP_004383170.1| - 9.3e-05 22.4 0.0 0.00011 22.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|330506742|ref|YP_004383170.1| - 0.0038 17.3 0.0 0.0075 16.4 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|330506742|ref|YP_004383170.1| - 0.0096 15.5 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_13 PF13880.6 gi|330506742|ref|YP_004383170.1| - 0.014 15.4 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_10 PF13673.7 gi|330506743|ref|YP_004383171.1| - 7.7e-17 61.4 0.0 8.8e-17 61.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|330506743|ref|YP_004383171.1| - 7.9e-14 51.9 0.0 1e-13 51.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|330506743|ref|YP_004383171.1| - 3.8e-13 49.6 0.0 5.4e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330506743|ref|YP_004383171.1| - 1.5e-05 24.9 0.0 2.4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|330506743|ref|YP_004383171.1| - 3e-05 24.1 0.0 0.00058 19.9 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|330506743|ref|YP_004383171.1| - 0.0017 19.0 0.0 0.0022 18.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|330506743|ref|YP_004383171.1| - 0.019 14.7 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|330506743|ref|YP_004383171.1| - 0.077 13.1 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PEMT PF04191.13 gi|330506744|ref|YP_004383172.1| - 4.6e-09 36.6 3.2 1.5e-08 35.0 3.2 1.9 1 1 0 1 1 1 1 Phospholipid methyltransferase DUF1295 PF06966.12 gi|330506744|ref|YP_004383172.1| - 5e-05 22.9 1.0 7.3e-05 22.4 0.9 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) ICMT PF04140.14 gi|330506744|ref|YP_004383172.1| - 0.0024 18.2 1.7 0.0075 16.7 1.7 1.9 1 1 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AgrB PF04647.15 gi|330506744|ref|YP_004383172.1| - 0.29 10.4 5.3 0.52 9.6 5.3 1.3 1 1 0 1 1 1 0 Accessory gene regulator B Herpes_LMP1 PF05297.11 gi|330506744|ref|YP_004383172.1| - 1.6 7.9 6.8 2.6 7.2 6.9 1.3 1 1 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DJ-1_PfpI PF01965.24 gi|330506745|ref|YP_004383173.1| - 1e-17 64.4 0.0 1.3e-17 64.1 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Multi_Drug_Res PF00893.19 gi|330506746|ref|YP_004383174.1| - 8.8e-28 96.8 8.5 1.2e-27 96.4 8.5 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein Phage_holin_5_2 PF16079.5 gi|330506746|ref|YP_004383174.1| - 0.0047 17.2 5.4 0.0047 17.2 5.4 2.1 2 0 0 2 2 2 1 Phage holin family Hol44, in holin superfamily V UPF0060 PF02694.15 gi|330506746|ref|YP_004383174.1| - 0.028 14.6 6.9 0.037 14.3 6.9 1.2 1 0 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family EamA PF00892.20 gi|330506746|ref|YP_004383174.1| - 0.13 12.4 14.2 0.32 11.1 14.3 1.6 1 1 0 1 1 1 0 EamA-like transporter family YwiC PF14256.6 gi|330506746|ref|YP_004383174.1| - 0.14 12.5 4.3 0.24 11.7 4.4 1.4 1 1 0 1 1 1 0 YwiC-like protein Mucin15 PF15672.5 gi|330506746|ref|YP_004383174.1| - 0.17 11.4 0.3 0.17 11.4 0.3 1.6 2 0 0 2 2 2 0 Cell-membrane associated Mucin15 Methyltransf_25 PF13649.6 gi|330506747|ref|YP_004383175.1| - 5.8e-17 62.2 0.0 1.1e-16 61.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330506747|ref|YP_004383175.1| - 2e-16 60.2 0.0 4.1e-16 59.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330506747|ref|YP_004383175.1| - 1.8e-15 57.3 0.0 3.3e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330506747|ref|YP_004383175.1| - 7.7e-15 55.0 0.1 9.5e-15 54.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330506747|ref|YP_004383175.1| - 2.1e-14 54.1 0.1 4.3e-14 53.1 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain TehB PF03848.14 gi|330506747|ref|YP_004383175.1| - 1.4e-08 34.4 0.0 1.7e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 gi|330506747|ref|YP_004383175.1| - 3.9e-08 33.0 0.1 5.5e-08 32.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|330506747|ref|YP_004383175.1| - 1.4e-07 31.3 0.0 1.9e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|330506747|ref|YP_004383175.1| - 3.2e-07 30.3 0.0 4.4e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|330506747|ref|YP_004383175.1| - 3.8e-05 23.1 0.1 5.4e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 gi|330506747|ref|YP_004383175.1| - 0.00024 20.3 0.0 0.00031 19.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.11 gi|330506747|ref|YP_004383175.1| - 0.00084 19.0 0.0 0.001 18.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|330506747|ref|YP_004383175.1| - 0.002 17.5 0.0 0.0029 16.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|330506747|ref|YP_004383175.1| - 0.0064 16.5 0.0 0.0092 16.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|330506747|ref|YP_004383175.1| - 0.014 14.5 0.0 0.025 13.6 0.0 1.4 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DREV PF05219.12 gi|330506747|ref|YP_004383175.1| - 0.026 13.6 0.1 0.045 12.9 0.0 1.4 2 0 0 2 2 2 0 DREV methyltransferase Methyltransf_18 PF12847.7 gi|330506747|ref|YP_004383175.1| - 0.048 13.6 0.1 0.064 13.2 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.17 gi|330506747|ref|YP_004383175.1| - 0.058 12.5 0.0 0.077 12.1 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_8 PF05148.15 gi|330506747|ref|YP_004383175.1| - 0.097 12.5 0.1 0.28 11.0 0.0 1.8 2 0 0 2 2 2 0 Hypothetical methyltransferase Methyltransf_PK PF05891.12 gi|330506747|ref|YP_004383175.1| - 0.12 11.9 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Abhydrolase_1 PF00561.20 gi|330506748|ref|YP_004383176.1| - 6.8e-22 78.3 0.0 2.8e-17 63.2 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|330506748|ref|YP_004383176.1| - 5.8e-14 53.2 0.0 6.6e-14 53.0 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|330506748|ref|YP_004383176.1| - 5.1e-10 39.0 0.0 3e-08 33.2 0.0 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|330506748|ref|YP_004383176.1| - 0.0035 17.5 0.0 0.0052 16.9 0.0 1.4 1 1 0 1 1 1 1 Thioesterase domain FSH1 PF03959.13 gi|330506748|ref|YP_004383176.1| - 0.013 15.2 0.0 0.048 13.3 0.0 1.8 1 1 0 1 1 1 0 Serine hydrolase (FSH1) PGAP1 PF07819.13 gi|330506748|ref|YP_004383176.1| - 0.018 14.8 0.4 0.11 12.1 0.4 2.0 1 1 0 1 1 1 0 PGAP1-like protein Palm_thioest PF02089.15 gi|330506748|ref|YP_004383176.1| - 0.081 12.8 0.0 0.098 12.5 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase DUF1100 PF06500.11 gi|330506748|ref|YP_004383176.1| - 0.089 11.6 0.0 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1100) DUF915 PF06028.11 gi|330506748|ref|YP_004383176.1| - 0.13 11.6 0.0 0.46 9.8 0.0 1.7 1 1 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) Abhydrolase_2 PF02230.16 gi|330506748|ref|YP_004383176.1| - 0.23 11.2 0.0 0.59 9.9 0.0 1.6 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Peptidase_M28 PF04389.17 gi|330506749|ref|YP_004383177.1| - 5.3e-22 78.5 0.0 1.2e-21 77.4 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M28 SPOC PF07744.13 gi|330506749|ref|YP_004383177.1| - 0.11 12.4 0.0 0.33 10.9 0.0 1.6 1 1 0 1 1 1 0 SPOC domain adh_short_C2 PF13561.6 gi|330506750|ref|YP_004383178.1| - 4.6e-60 203.1 0.0 5.6e-60 202.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|330506750|ref|YP_004383178.1| - 3.9e-51 173.3 0.0 4.9e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|330506750|ref|YP_004383178.1| - 4.2e-13 49.6 0.0 7.2e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 KR domain ApbA PF02558.16 gi|330506750|ref|YP_004383178.1| - 0.0048 16.6 0.0 0.3 10.7 0.0 2.2 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Epimerase PF01370.21 gi|330506750|ref|YP_004383178.1| - 0.006 16.1 0.1 0.017 14.6 0.1 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|330506750|ref|YP_004383178.1| - 0.0069 16.3 0.1 0.019 14.8 0.1 1.6 2 0 0 2 2 2 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|330506750|ref|YP_004383178.1| - 0.097 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase OrfB_Zn_ribbon PF07282.11 gi|330506751|ref|YP_004383179.1| - 0.094 12.7 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PMSR PF01625.21 gi|330506754|ref|YP_004383182.1| - 3.4e-65 218.9 0.5 5.2e-65 218.3 0.5 1.3 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.18 gi|330506754|ref|YP_004383182.1| - 3.8e-48 162.5 0.0 6.7e-48 161.8 0.0 1.4 1 0 0 1 1 1 1 SelR domain Vsr PF03852.15 gi|330506754|ref|YP_004383182.1| - 0.094 12.6 0.0 2.9 7.8 0.0 2.9 3 0 0 3 3 3 0 DNA mismatch endonuclease Vsr DUF1328 PF07043.13 gi|330506755|ref|YP_004383183.1| - 5.2e-09 36.2 12.9 5.2e-09 36.2 12.9 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1328) CSG2 PF16965.5 gi|330506755|ref|YP_004383183.1| - 0.016 14.2 1.6 0.018 14.0 1.6 1.0 1 0 0 1 1 1 0 Ceramide synthase regulator FA_desaturase PF00487.24 gi|330506755|ref|YP_004383183.1| - 0.75 9.6 4.8 0.81 9.5 4.8 1.0 1 0 0 1 1 1 0 Fatty acid desaturase CitMHS PF03600.16 gi|330506755|ref|YP_004383183.1| - 1.3 8.2 9.2 1.2 8.3 9.2 1.1 1 0 0 1 1 1 0 Citrate transporter DUF2079 PF09852.9 gi|330506756|ref|YP_004383184.1| - 0.00058 18.8 2.6 0.0006 18.8 2.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2079) TPR_12 PF13424.6 gi|330506757|ref|YP_004383185.1| - 8.8e-15 54.8 49.1 0.0028 17.9 0.4 10.6 5 3 7 12 12 12 8 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330506757|ref|YP_004383185.1| - 0.026 14.4 41.2 0.61 10.0 1.2 11.9 13 3 1 14 14 14 0 Tetratricopeptide repeat HBM PF16591.5 gi|330506757|ref|YP_004383185.1| - 0.14 11.5 18.7 1 8.8 0.6 5.3 3 2 2 5 5 5 0 Helical bimodular sensor domain Orexin PF02072.15 gi|330506757|ref|YP_004383185.1| - 0.17 11.8 0.4 2.1 8.3 0.1 2.5 2 0 0 2 2 2 0 Prepro-orexin Arfaptin PF06456.13 gi|330506757|ref|YP_004383185.1| - 0.2 11.2 5.2 0.22 11.1 0.2 3.2 3 1 0 3 3 3 0 Arfaptin-like domain TPR_14 PF13428.6 gi|330506757|ref|YP_004383185.1| - 0.86 10.6 41.0 2.3 9.3 0.3 10.6 8 3 4 12 12 12 0 Tetratricopeptide repeat ATC_hydrolase PF14196.6 gi|330506758|ref|YP_004383186.1| - 5.6e-08 33.7 0.1 8e-08 33.2 0.1 1.3 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase MetOD1 PF18546.1 gi|330506758|ref|YP_004383186.1| - 0.066 13.2 0.7 0.37 10.8 0.7 2.0 1 1 0 1 1 1 0 Metanogen output domain 1 Fer4_19 PF06902.11 gi|330506759|ref|YP_004383187.1| - 1.9e-23 82.3 0.3 3.5e-23 81.4 0.3 1.5 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster zf-CDGSH PF09360.10 gi|330506759|ref|YP_004383187.1| - 1.2e-17 63.9 0.4 2.3e-17 62.9 0.4 1.5 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type Fer4_6 PF12837.7 gi|330506759|ref|YP_004383187.1| - 0.013 15.5 0.5 0.12 12.5 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|330506759|ref|YP_004383187.1| - 0.018 15.6 0.1 0.075 13.6 0.1 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I MscL PF01741.18 gi|330506760|ref|YP_004383188.1| - 6.3e-39 133.0 2.3 7.7e-39 132.7 2.3 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL zf-ribbon_3 PF13248.6 gi|330506760|ref|YP_004383188.1| - 1.6e-05 24.1 1.6 2.4e-05 23.6 1.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.9 gi|330506760|ref|YP_004383188.1| - 0.0028 17.7 5.0 0.0047 17.0 5.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|330506760|ref|YP_004383188.1| - 0.029 14.4 1.2 0.042 13.9 1.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon UPF0239 PF06783.11 gi|330506760|ref|YP_004383188.1| - 0.057 13.6 0.0 0.083 13.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0239) Gly-zipper_YMGG PF13441.6 gi|330506760|ref|YP_004383188.1| - 0.13 12.1 0.5 0.13 12.1 0.5 1.7 2 0 0 2 2 2 0 YMGG-like Gly-zipper DUF2089 PF09862.9 gi|330506760|ref|YP_004383188.1| - 0.2 11.7 0.9 1.3 9.1 1.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) DUF21 PF01595.20 gi|330506761|ref|YP_004383189.1| - 3.2e-47 160.5 5.9 4.4e-47 160.0 5.9 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|330506761|ref|YP_004383189.1| - 1.2e-24 86.1 0.0 2.9e-24 84.9 0.0 1.7 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|330506761|ref|YP_004383189.1| - 1.2e-08 35.3 0.2 5.3e-05 23.6 0.1 2.6 2 0 0 2 2 2 2 CBS domain QueC PF06508.13 gi|330506762|ref|YP_004383190.1| - 3.2e-69 232.6 0.0 3.6e-69 232.5 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|330506762|ref|YP_004383190.1| - 0.0002 21.2 0.0 0.00048 19.9 0.0 1.6 1 1 0 1 1 1 1 PP-loop family ThiI PF02568.14 gi|330506762|ref|YP_004383190.1| - 0.003 17.2 0.0 0.01 15.4 0.0 2.1 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|330506762|ref|YP_004383190.1| - 0.018 14.7 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase NAD_synthase PF02540.17 gi|330506762|ref|YP_004383190.1| - 0.041 13.0 0.0 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 gi|330506762|ref|YP_004383190.1| - 0.076 11.8 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase DUF357 PF04010.13 gi|330506763|ref|YP_004383191.1| - 1.1e-11 44.6 0.0 1.3e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Pyr_redox_2 PF07992.14 gi|330506765|ref|YP_004383193.1| - 3.3e-52 177.6 0.0 5e-52 177.0 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|330506765|ref|YP_004383193.1| - 3.4e-25 88.4 0.1 6.5e-25 87.5 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|330506765|ref|YP_004383193.1| - 9.7e-17 61.3 0.1 3e-15 56.5 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|330506765|ref|YP_004383193.1| - 3.9e-10 39.4 0.1 5.8e-08 32.2 0.2 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|330506765|ref|YP_004383193.1| - 1.1e-06 28.1 0.0 4.1e-06 26.3 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|330506765|ref|YP_004383193.1| - 2.3e-05 23.6 7.3 0.00016 20.9 2.3 2.8 2 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|330506765|ref|YP_004383193.1| - 0.0001 21.8 0.1 0.00017 21.1 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|330506765|ref|YP_004383193.1| - 0.00026 21.2 0.6 0.19 11.9 0.2 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|330506765|ref|YP_004383193.1| - 0.011 14.4 1.9 0.19 10.4 0.6 2.7 3 0 0 3 3 3 0 HI0933-like protein DAO PF01266.24 gi|330506765|ref|YP_004383193.1| - 0.02 14.5 11.5 2 7.9 1.3 3.5 2 2 2 4 4 4 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|330506765|ref|YP_004383193.1| - 0.026 13.9 0.0 4.7 6.5 0.0 2.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|330506765|ref|YP_004383193.1| - 0.035 13.8 2.0 0.15 11.7 0.0 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|330506765|ref|YP_004383193.1| - 0.053 13.4 0.2 1.4 8.8 0.0 2.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UXS1_N PF11803.8 gi|330506765|ref|YP_004383193.1| - 0.11 12.8 1.0 0.39 11.1 0.0 2.3 3 0 0 3 3 3 0 UDP-glucuronate decarboxylase N-terminal Lycopene_cycl PF05834.12 gi|330506765|ref|YP_004383193.1| - 1.9 7.5 4.8 11 5.0 1.0 2.8 3 1 0 3 3 3 0 Lycopene cyclase protein Radical_SAM PF04055.21 gi|330506766|ref|YP_004383194.1| - 1.6e-17 64.4 0.0 2.7e-17 63.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF3463 PF11946.8 gi|330506766|ref|YP_004383194.1| - 0.0037 17.1 0.0 0.0065 16.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) Nit_Regul_Hom PF10126.9 gi|330506766|ref|YP_004383194.1| - 0.02 14.9 0.0 3.3 7.8 0.0 2.7 1 1 2 3 3 3 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII SSXT PF05030.12 gi|330506766|ref|YP_004383194.1| - 0.087 12.5 0.0 32 4.3 0.0 3.1 3 0 0 3 3 3 0 SSXT protein (N-terminal region) PAR1 PF06521.11 gi|330506766|ref|YP_004383194.1| - 0.15 11.7 0.1 0.25 11.0 0.1 1.3 1 0 0 1 1 1 0 PAR1 protein LRR_4 PF12799.7 gi|330506767|ref|YP_004383195.1| - 2e-78 256.9 119.3 3.1e-10 40.1 0.8 11.6 3 2 5 12 12 12 12 Leucine Rich repeats (2 copies) LRR_8 PF13855.6 gi|330506767|ref|YP_004383195.1| - 8.5e-77 252.9 201.2 5.1e-10 39.0 6.0 11.5 2 2 13 16 16 16 16 Leucine rich repeat LRR_6 PF13516.6 gi|330506767|ref|YP_004383195.1| - 3e-30 101.7 103.3 0.0091 16.0 0.1 18.4 15 3 3 18 18 18 17 Leucine Rich repeat LRR_9 PF14580.6 gi|330506767|ref|YP_004383195.1| - 1.8e-14 53.6 38.2 0.0011 18.5 1.9 6.7 1 1 8 9 9 9 9 Leucine-rich repeat LRR_1 PF00560.33 gi|330506767|ref|YP_004383195.1| - 0.18 12.4 89.2 4.4 8.2 0.1 18.1 16 4 1 17 17 17 0 Leucine Rich Repeat bZIP_C PF12498.8 gi|330506767|ref|YP_004383195.1| - 3.8 8.5 4.8 10 7.1 0.2 3.8 3 1 1 5 5 5 0 Basic leucine-zipper C terminal PBP_like_2 PF12849.7 gi|330506768|ref|YP_004383196.1| - 2.4e-33 116.0 0.0 1e-32 114.0 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|330506768|ref|YP_004383196.1| - 1.5e-18 66.6 0.0 2.1e-18 66.1 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|330506768|ref|YP_004383196.1| - 2.7e-06 27.3 0.0 5e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF2156 PF09924.9 gi|330506769|ref|YP_004383197.1| - 0.014 14.4 0.0 0.016 14.2 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) AHJR-like PF18743.1 gi|330506769|ref|YP_004383197.1| - 0.028 14.0 0.0 0.031 13.8 0.0 1.1 1 0 0 1 1 1 0 REase_AHJR-like NYN PF01936.18 gi|330506769|ref|YP_004383197.1| - 0.032 14.7 0.0 0.038 14.5 0.0 1.1 1 0 0 1 1 1 0 NYN domain Slx4 PF09494.10 gi|330506769|ref|YP_004383197.1| - 0.061 13.3 0.0 0.093 12.7 0.0 1.2 1 0 0 1 1 1 0 Slx4 endonuclease IDH PF03971.14 gi|330506769|ref|YP_004383197.1| - 0.13 10.6 0.0 0.15 10.5 0.0 1.0 1 0 0 1 1 1 0 Monomeric isocitrate dehydrogenase zinc_ribbon_6 PF14599.6 gi|330506770|ref|YP_004383198.1| - 0.0099 15.9 1.1 0.027 14.5 1.1 1.7 1 1 1 2 2 2 1 Zinc-ribbon DZR PF12773.7 gi|330506770|ref|YP_004383198.1| - 0.052 13.6 3.3 0.12 12.4 3.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|330506770|ref|YP_004383198.1| - 0.11 12.4 4.2 0.17 11.8 3.6 1.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.6 gi|330506770|ref|YP_004383198.1| - 0.27 11.2 3.1 0.66 10.0 3.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|330506770|ref|YP_004383198.1| - 0.32 10.6 2.9 0.66 9.6 0.2 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger MMR_HSR1_Xtn PF16897.5 gi|330506771|ref|YP_004383199.1| - 4.7e-29 100.5 0.0 1e-28 99.5 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|330506771|ref|YP_004383199.1| - 1.4e-21 76.7 0.0 3.1e-21 75.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|330506771|ref|YP_004383199.1| - 4.4e-17 61.9 0.0 8.9e-17 60.9 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|330506771|ref|YP_004383199.1| - 4.7e-15 55.5 0.0 4.6e-13 49.0 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|330506771|ref|YP_004383199.1| - 6.6e-05 23.0 1.5 0.043 13.9 0.2 2.9 2 1 1 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 gi|330506771|ref|YP_004383199.1| - 0.00023 21.1 0.3 0.043 13.7 0.4 2.6 2 1 0 2 2 2 1 RsgA GTPase SRPRB PF09439.10 gi|330506771|ref|YP_004383199.1| - 0.0065 15.9 0.9 0.051 13.0 0.0 2.5 3 0 0 3 3 3 1 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|330506771|ref|YP_004383199.1| - 0.012 15.0 0.6 0.019 14.3 0.0 1.6 2 0 0 2 2 2 0 AIG1 family MnmE_helical PF12631.7 gi|330506771|ref|YP_004383199.1| - 0.023 14.9 0.0 0.052 13.7 0.0 1.4 1 1 0 1 1 1 0 MnmE helical domain DUF724 PF05266.14 gi|330506771|ref|YP_004383199.1| - 0.038 13.8 0.7 0.059 13.2 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF5357 PF17310.2 gi|330506771|ref|YP_004383199.1| - 0.11 11.1 0.1 0.16 10.5 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5357) ABC_tran_CTD PF16326.5 gi|330506771|ref|YP_004383199.1| - 1.9 8.8 6.7 8 6.8 6.7 2.0 1 1 0 1 1 1 0 ABC transporter C-terminal domain bZIP_2 PF07716.15 gi|330506771|ref|YP_004383199.1| - 2.6 8.2 6.2 5.9 7.1 0.5 2.3 2 0 0 2 2 2 0 Basic region leucine zipper FlxA PF14282.6 gi|330506771|ref|YP_004383199.1| - 4.7 7.3 7.2 17 5.5 7.2 1.7 1 1 0 1 1 1 0 FlxA-like protein Cas_Cas4 PF01930.17 gi|330506772|ref|YP_004383200.1| - 4.2e-06 27.0 0.0 5.1e-05 23.4 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|330506772|ref|YP_004383200.1| - 0.0001 22.3 0.0 0.00024 21.1 0.0 1.6 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 gi|330506772|ref|YP_004383200.1| - 0.0044 16.4 0.0 0.0055 16.1 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 LysM PF01476.20 gi|330506773|ref|YP_004383201.1| - 0.015 15.4 0.0 0.046 13.8 0.0 1.9 1 1 0 1 1 1 0 LysM domain DUF4131 PF13567.6 gi|330506773|ref|YP_004383201.1| - 0.025 14.2 0.1 0.12 12.0 0.1 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF4131) ANTAR PF03861.14 gi|330506773|ref|YP_004383201.1| - 1.9 8.4 4.1 23 4.9 0.3 2.7 2 1 0 2 2 2 0 ANTAR domain Helicase_C_2 PF13307.6 gi|330506777|ref|YP_004383205.1| - 3e-30 105.6 0.0 6.6e-30 104.5 0.0 1.6 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|330506777|ref|YP_004383205.1| - 2.5e-14 53.3 0.0 5.4e-14 52.2 0.0 1.7 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|330506777|ref|YP_004383205.1| - 3.2e-07 30.5 0.0 0.0028 17.7 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit HBB PF06777.11 gi|330506777|ref|YP_004383205.1| - 2.2e-05 24.2 0.0 5.7e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Helical and beta-bridge domain AAA_16 PF13191.6 gi|330506777|ref|YP_004383205.1| - 0.00037 20.9 0.3 0.012 16.0 0.0 2.9 3 1 0 3 3 3 1 AAA ATPase domain DEAD PF00270.29 gi|330506777|ref|YP_004383205.1| - 0.00065 19.5 0.1 0.51 10.1 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|330506777|ref|YP_004383205.1| - 0.00065 20.0 0.2 0.23 11.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain PAR1 PF06521.11 gi|330506777|ref|YP_004383205.1| - 0.049 13.3 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 PAR1 protein AAA PF00004.29 gi|330506777|ref|YP_004383205.1| - 0.51 10.8 2.3 41 4.6 0.0 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF555 PF04475.12 gi|330506778|ref|YP_004383206.1| - 3.3e-46 155.7 0.0 3.8e-46 155.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zf-RanBP PF00641.18 gi|330506778|ref|YP_004383206.1| - 0.052 12.9 0.9 0.084 12.2 0.9 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Response_reg PF00072.24 gi|330506779|ref|YP_004383207.1| - 4.9e-38 129.7 0.1 1.3e-24 86.5 0.1 3.0 3 0 0 3 3 3 2 Response regulator receiver domain HATPase_c PF02518.26 gi|330506779|ref|YP_004383207.1| - 1.2e-30 106.3 0.2 2.3e-30 105.4 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|330506779|ref|YP_004383207.1| - 2.3e-20 72.4 1.1 1.6e-19 69.7 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|330506779|ref|YP_004383207.1| - 4.1e-07 30.0 0.0 3e-06 27.2 0.0 2.4 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|330506779|ref|YP_004383207.1| - 2.7e-06 27.6 0.0 0.0037 17.5 0.0 3.3 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|330506779|ref|YP_004383207.1| - 1.4e-05 25.2 0.0 0.00013 22.2 0.0 2.6 1 1 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|330506779|ref|YP_004383207.1| - 0.012 15.5 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|330506779|ref|YP_004383207.1| - 0.013 15.4 0.0 0.042 13.8 0.0 1.8 1 0 0 1 1 1 0 GHKL domain PAS_8 PF13188.7 gi|330506779|ref|YP_004383207.1| - 0.067 13.2 0.0 0.23 11.5 0.0 1.9 1 0 0 1 1 1 0 PAS domain PIN_5 PF08745.11 gi|330506780|ref|YP_004383208.1| - 7.4e-90 299.9 0.1 8.4e-90 299.7 0.1 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease DUF5615 PF18480.1 gi|330506780|ref|YP_004383208.1| - 0.16 11.7 0.0 0.4 10.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) NRD1_2 PF01995.16 gi|330506781|ref|YP_004383209.1| - 6.4e-81 271.1 0.1 7.2e-81 271.0 0.1 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HHH_8 PF14716.6 gi|330506782|ref|YP_004383210.1| - 4.3e-22 78.3 3.8 1.2e-21 76.9 1.4 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.6 gi|330506782|ref|YP_004383210.1| - 2.2e-21 75.8 0.0 4.7e-21 74.7 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_5 PF14520.6 gi|330506782|ref|YP_004383210.1| - 3.8e-13 49.8 1.7 4.8e-07 30.3 0.1 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix domain PHP PF02811.19 gi|330506782|ref|YP_004383210.1| - 4.1e-08 33.7 0.0 2.2e-07 31.3 0.0 2.0 2 1 0 2 2 2 1 PHP domain DNA_pol_B_palm PF14792.6 gi|330506782|ref|YP_004383210.1| - 1.3e-06 28.6 0.1 1.1e-05 25.6 0.0 2.2 2 0 0 2 2 2 1 DNA polymerase beta palm HHH PF00633.23 gi|330506782|ref|YP_004383210.1| - 3.2e-05 23.6 2.4 0.14 12.1 0.2 3.8 3 0 0 3 3 3 2 Helix-hairpin-helix motif RNase_P_p30 PF01876.16 gi|330506782|ref|YP_004383210.1| - 0.003 17.1 0.0 0.0085 15.6 0.0 1.8 1 1 0 1 1 1 1 RNase P subunit p30 HHH_3 PF12836.7 gi|330506782|ref|YP_004383210.1| - 0.0035 17.6 0.1 1.2 9.5 0.0 3.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|330506782|ref|YP_004383210.1| - 0.021 15.1 0.1 8.3 6.7 0.0 2.6 1 1 1 2 2 2 0 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|330506782|ref|YP_004383210.1| - 0.037 13.9 0.0 1.6 8.6 0.0 2.6 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|330506782|ref|YP_004383210.1| - 0.044 13.9 0.0 0.62 10.2 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF3701 PF12482.8 gi|330506782|ref|YP_004383210.1| - 0.13 12.4 0.0 2.4 8.3 0.0 2.6 2 0 0 2 2 2 0 Phage integrase protein PHP_C PF13263.6 gi|330506782|ref|YP_004383210.1| - 0.14 11.9 0.2 1 9.2 0.0 2.6 2 0 0 2 2 2 0 PHP-associated Adenylsucc_synt PF00709.21 gi|330506783|ref|YP_004383211.1| - 7e-156 519.4 0.0 7.9e-156 519.2 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase RimK PF08443.11 gi|330506784|ref|YP_004383212.1| - 1.4e-25 90.0 0.0 1.8e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|330506784|ref|YP_004383212.1| - 1.1e-11 44.5 0.0 1.6e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|330506784|ref|YP_004383212.1| - 2e-09 37.7 0.0 4.6e-09 36.5 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|330506784|ref|YP_004383212.1| - 3.6e-06 26.4 0.0 9.1e-05 21.8 0.0 2.4 1 1 0 1 1 1 1 YheC/D like ATP-grasp Rimk_N PF18030.1 gi|330506784|ref|YP_004383212.1| - 5.2e-05 23.6 0.0 0.00016 22.0 0.0 1.8 2 0 0 2 2 2 1 RimK PreATP-grasp domain ATPgrasp_ST PF14397.6 gi|330506784|ref|YP_004383212.1| - 0.0072 15.6 0.0 0.19 10.9 0.0 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp GSP_synth PF03738.14 gi|330506784|ref|YP_004383212.1| - 0.02 14.1 0.0 0.031 13.4 0.0 1.2 1 0 0 1 1 1 0 Glutathionylspermidine synthase preATP-grasp AMP-binding PF00501.28 gi|330506785|ref|YP_004383213.1| - 9.1e-88 294.7 0.0 1.1e-87 294.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330506785|ref|YP_004383213.1| - 2.1e-22 79.9 1.4 2.7e-21 76.3 1.6 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|330506785|ref|YP_004383213.1| - 4.4e-14 52.1 5.6 4.4e-14 52.1 5.6 2.2 3 0 0 3 3 3 1 Acetyl-coenzyme A synthetase N-terminus Glyco_hydro_14 PF01373.17 gi|330506785|ref|YP_004383213.1| - 0.11 11.5 0.2 0.42 9.5 0.0 1.9 2 0 0 2 2 2 0 Glycosyl hydrolase family 14 DNA_pol_B_palm PF14792.6 gi|330506785|ref|YP_004383213.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase beta palm AMP-binding PF00501.28 gi|330506786|ref|YP_004383214.1| - 1.7e-89 300.4 0.0 2e-89 300.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330506786|ref|YP_004383214.1| - 9.3e-28 97.0 7.3 1.2e-27 96.6 4.3 2.7 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|330506786|ref|YP_004383214.1| - 5.7e-17 61.4 2.2 5.7e-17 61.4 2.2 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus DUF3797 PF12677.7 gi|330506786|ref|YP_004383214.1| - 0.27 11.2 1.0 0.45 10.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) AMP-binding PF00501.28 gi|330506787|ref|YP_004383215.1| - 6e-93 311.7 0.0 7.8e-93 311.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330506787|ref|YP_004383215.1| - 5.6e-29 100.9 4.0 5.6e-29 100.9 4.0 2.3 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|330506787|ref|YP_004383215.1| - 4.4e-14 52.1 6.0 4.4e-14 52.1 6.0 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus DNA_pol3_finger PF17657.1 gi|330506787|ref|YP_004383215.1| - 0.15 11.4 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial DNA polymerase III alpha subunit finger domain AMP-binding PF00501.28 gi|330506788|ref|YP_004383216.1| - 2.8e-94 316.1 0.0 4.3e-94 315.5 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330506788|ref|YP_004383216.1| - 1.7e-27 96.2 2.1 3.4e-27 95.2 1.8 1.7 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|330506788|ref|YP_004383216.1| - 2.5e-17 62.5 2.5 2.5e-17 62.5 2.5 2.4 3 0 0 3 3 3 1 Acetyl-coenzyme A synthetase N-terminus Radical_SAM PF04055.21 gi|330506789|ref|YP_004383217.1| - 8.9e-21 75.0 0.0 3.9e-20 72.9 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|330506789|ref|YP_004383217.1| - 1e-16 60.7 0.1 2.2e-16 59.7 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|330506789|ref|YP_004383217.1| - 1.9e-05 24.6 0.0 3.7e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 TRAM domain AI-2E_transport PF01594.16 gi|330506790|ref|YP_004383218.1| - 1.1e-39 136.5 30.5 1.4e-39 136.1 30.5 1.0 1 0 0 1 1 1 1 AI-2E family transporter Glycos_transf_3 PF00591.21 gi|330506791|ref|YP_004383219.1| - 8.7e-60 202.4 0.0 1.2e-59 202.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|330506791|ref|YP_004383219.1| - 9e-13 47.9 0.1 2.3e-12 46.6 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Flagellin_IN PF07196.13 gi|330506791|ref|YP_004383219.1| - 0.19 12.0 1.1 0.47 10.7 1.1 1.6 1 0 0 1 1 1 0 Flagellin hook IN motif ADH_N PF08240.12 gi|330506792|ref|YP_004383220.1| - 3.9e-28 97.5 0.2 6.8e-28 96.7 0.2 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|330506792|ref|YP_004383220.1| - 8.9e-08 32.2 0.0 1.4e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|330506792|ref|YP_004383220.1| - 0.0039 18.2 0.0 0.0078 17.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase IGFBP PF00219.18 gi|330506792|ref|YP_004383220.1| - 0.13 12.9 3.0 2.4 8.8 0.6 2.4 2 0 0 2 2 2 0 Insulin-like growth factor binding protein SepSecS PF05889.13 gi|330506796|ref|YP_004383224.1| - 2.1e-50 171.6 0.0 3.3e-50 170.9 0.0 1.3 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|330506796|ref|YP_004383224.1| - 6e-13 48.5 0.0 9.4e-13 47.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|330506796|ref|YP_004383224.1| - 1.6e-08 34.2 0.0 2.4e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.20 gi|330506796|ref|YP_004383224.1| - 0.0014 17.4 0.0 0.0022 16.8 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain DegT_DnrJ_EryC1 PF01041.17 gi|330506796|ref|YP_004383224.1| - 0.035 13.4 0.0 0.062 12.6 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|330506796|ref|YP_004383224.1| - 0.037 12.6 0.0 0.055 12.0 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|330506796|ref|YP_004383224.1| - 0.14 11.4 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase GDC-P PF02347.16 gi|330506796|ref|YP_004383224.1| - 0.21 10.4 0.0 0.31 9.8 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein GDPD PF03009.17 gi|330506797|ref|YP_004383225.1| - 1.9e-27 96.6 0.0 1.7e-24 87.0 0.0 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family zf-like PF04071.12 gi|330506797|ref|YP_004383225.1| - 3.5e-26 90.9 6.7 6.5e-26 90.1 6.7 1.4 1 0 0 1 1 1 1 Cysteine-rich small domain CCDC117 PF15810.5 gi|330506797|ref|YP_004383225.1| - 0.037 14.3 0.0 0.066 13.5 0.0 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 117 GDPD_2 PF13653.6 gi|330506797|ref|YP_004383225.1| - 0.17 12.4 0.1 0.42 11.1 0.1 1.7 1 0 0 1 1 1 0 Glycerophosphoryl diester phosphodiesterase family HD PF01966.22 gi|330506799|ref|YP_004383227.1| - 2.2e-11 44.0 0.2 5.9e-11 42.7 0.2 1.8 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|330506799|ref|YP_004383227.1| - 0.0016 17.9 0.1 0.0049 16.4 0.1 1.7 2 0 0 2 2 2 1 HDOD domain DUF758 PF05527.11 gi|330506799|ref|YP_004383227.1| - 0.028 14.4 0.0 0.065 13.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF758) NAC PF01849.18 gi|330506800|ref|YP_004383228.1| - 1.5e-15 56.9 0.2 2e-15 56.5 0.2 1.2 1 0 0 1 1 1 1 NAC domain ArlS_N PF18719.1 gi|330506800|ref|YP_004383228.1| - 0.0029 17.8 0.1 0.031 14.5 0.0 2.0 1 1 1 2 2 2 1 ArlS sensor domain PAC2 PF09754.9 gi|330506803|ref|YP_004383231.1| - 4e-29 102.2 0.0 4.8e-29 101.9 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF89 PF01937.19 gi|330506804|ref|YP_004383232.1| - 9.4e-36 123.5 0.1 4.7e-35 121.2 0.1 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF89 DREPP PF05558.12 gi|330506804|ref|YP_004383232.1| - 0.095 12.6 0.1 0.46 10.3 0.0 1.9 2 0 0 2 2 2 0 DREPP plasma membrane polypeptide Hist_deacetyl PF00850.19 gi|330506805|ref|YP_004383233.1| - 4.8e-37 128.1 0.5 4e-36 125.1 0.5 1.8 1 1 1 2 2 2 2 Histone deacetylase domain Glycos_transf_3 PF00591.21 gi|330506806|ref|YP_004383234.1| - 1.9e-13 50.6 0.3 8e-13 48.6 0.3 1.9 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|330506806|ref|YP_004383234.1| - 3.1e-12 46.1 0.0 9.1e-12 44.7 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.13 gi|330506806|ref|YP_004383234.1| - 7.8e-12 44.7 0.0 1.9e-11 43.5 0.0 1.7 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Molydop_binding PF01568.21 gi|330506806|ref|YP_004383234.1| - 0.00028 20.9 0.0 0.00059 19.8 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.9 gi|330506806|ref|YP_004383234.1| - 0.0046 15.8 0.0 0.0072 15.2 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) NTP_transf_2 PF01909.23 gi|330506807|ref|YP_004383235.1| - 0.00031 21.0 0.0 0.00062 20.0 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Sua5_yciO_yrdC PF01300.18 gi|330506808|ref|YP_004383236.1| - 2.5e-46 157.4 0.0 2.8e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination HTH_3 PF01381.22 gi|330506809|ref|YP_004383237.1| - 1.8e-05 24.7 1.3 2.9e-05 24.0 1.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|330506809|ref|YP_004383237.1| - 2.3e-05 24.3 1.2 9e-05 22.4 1.3 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|330506809|ref|YP_004383237.1| - 0.00025 21.3 0.1 0.00039 20.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|330506809|ref|YP_004383237.1| - 0.00089 19.1 0.4 0.005 16.7 0.4 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain DZR PF12773.7 gi|330506809|ref|YP_004383237.1| - 0.036 14.1 0.5 0.063 13.3 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon AAA PF00004.29 gi|330506810|ref|YP_004383238.1| - 1.3e-42 145.3 0.0 2.6e-42 144.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|330506810|ref|YP_004383238.1| - 1.4e-12 47.2 0.1 3.5e-12 45.9 0.1 1.8 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|330506810|ref|YP_004383238.1| - 2.2e-11 43.5 0.1 5.4e-11 42.3 0.1 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_16 PF13191.6 gi|330506810|ref|YP_004383238.1| - 2.7e-06 27.9 1.4 0.00021 21.8 0.1 2.6 2 1 1 3 3 2 1 AAA ATPase domain AAA_2 PF07724.14 gi|330506810|ref|YP_004383238.1| - 2.8e-06 27.6 0.0 6e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|330506810|ref|YP_004383238.1| - 1.3e-05 25.3 0.2 0.00015 21.8 0.1 2.8 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|330506810|ref|YP_004383238.1| - 0.00011 22.5 0.2 0.019 15.3 0.0 2.4 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|330506810|ref|YP_004383238.1| - 0.00039 20.2 0.0 0.001 18.9 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|330506810|ref|YP_004383238.1| - 0.00057 19.2 0.0 0.0012 18.1 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|330506810|ref|YP_004383238.1| - 0.00089 19.4 0.0 0.002 18.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|330506810|ref|YP_004383238.1| - 0.0013 19.0 0.0 0.003 17.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|330506810|ref|YP_004383238.1| - 0.0027 17.5 0.0 0.0061 16.3 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.11 gi|330506810|ref|YP_004383238.1| - 0.0028 17.5 0.0 0.0083 16.0 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|330506810|ref|YP_004383238.1| - 0.0031 17.3 0.3 0.01 15.6 0.3 1.8 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|330506810|ref|YP_004383238.1| - 0.0031 16.7 0.0 0.0057 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Prot_ATP_OB_N PF17758.1 gi|330506810|ref|YP_004383238.1| - 0.0032 17.1 0.4 0.008 15.8 0.1 1.9 2 0 0 2 2 1 1 Proteasomal ATPase OB N-terminal domain RNA_helicase PF00910.22 gi|330506810|ref|YP_004383238.1| - 0.0055 17.1 0.0 0.0099 16.3 0.0 1.4 1 0 0 1 1 1 1 RNA helicase Mg_chelatase PF01078.21 gi|330506810|ref|YP_004383238.1| - 0.013 14.9 0.5 0.037 13.4 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|330506810|ref|YP_004383238.1| - 0.013 15.4 0.2 0.11 12.4 0.1 2.2 2 0 0 2 2 2 0 NACHT domain ATPase PF06745.13 gi|330506810|ref|YP_004383238.1| - 0.014 14.8 0.1 0.069 12.5 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_18 PF13238.6 gi|330506810|ref|YP_004383238.1| - 0.016 15.7 0.1 0.068 13.7 0.0 2.1 2 1 0 2 2 2 0 AAA domain Torsin PF06309.11 gi|330506810|ref|YP_004383238.1| - 0.018 15.1 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 Torsin AAA_11 PF13086.6 gi|330506810|ref|YP_004383238.1| - 0.02 14.7 0.5 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain CPT PF07931.12 gi|330506810|ref|YP_004383238.1| - 0.025 14.4 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_7 PF12775.7 gi|330506810|ref|YP_004383238.1| - 0.031 13.8 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|330506810|ref|YP_004383238.1| - 0.038 14.0 0.0 0.073 13.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|330506810|ref|YP_004383238.1| - 0.051 13.3 0.0 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|330506810|ref|YP_004383238.1| - 0.067 13.7 0.1 0.46 11.0 0.0 2.2 2 0 0 2 2 2 0 ABC transporter AFG1_ATPase PF03969.16 gi|330506810|ref|YP_004383238.1| - 0.077 11.9 0.0 0.24 10.2 0.0 1.8 2 0 0 2 2 2 0 AFG1-like ATPase NTPase_1 PF03266.15 gi|330506810|ref|YP_004383238.1| - 0.087 12.7 0.1 0.27 11.1 0.0 1.9 2 0 0 2 2 1 0 NTPase NB-ARC PF00931.22 gi|330506810|ref|YP_004383238.1| - 0.098 11.8 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 gi|330506810|ref|YP_004383238.1| - 0.11 12.6 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|330506810|ref|YP_004383238.1| - 0.12 11.4 0.0 0.3 10.2 0.0 1.6 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 gi|330506810|ref|YP_004383238.1| - 0.15 11.4 1.6 0.22 10.8 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin COG2 PF06148.11 gi|330506813|ref|YP_004383241.1| - 0.065 13.3 0.0 0.075 13.1 0.0 1.1 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 OrfB_Zn_ribbon PF07282.11 gi|330506814|ref|YP_004383242.1| - 2.3e-23 81.9 0.3 7.4e-23 80.3 0.0 2.0 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330506814|ref|YP_004383242.1| - 2.5e-07 30.9 0.5 2.5e-07 30.9 0.5 1.6 2 0 0 2 2 2 1 Probable transposase DZR PF12773.7 gi|330506814|ref|YP_004383242.1| - 0.027 14.5 0.1 0.06 13.4 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|330506814|ref|YP_004383242.1| - 0.05 13.6 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|330506814|ref|YP_004383242.1| - 0.14 12.1 0.6 0.26 11.2 0.6 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF4337 PF14235.6 gi|330506814|ref|YP_004383242.1| - 0.57 10.3 4.0 8.6 6.5 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) DUF772 PF05598.11 gi|330506815|ref|YP_004383243.1| - 2.6e-21 75.4 0.0 4.8e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|330506815|ref|YP_004383243.1| - 1.5e-15 57.4 4.6 5e-15 55.7 4.6 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|330506815|ref|YP_004383243.1| - 3e-05 23.8 0.3 0.00012 21.8 0.3 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.6 gi|330506815|ref|YP_004383243.1| - 3.1e-05 24.2 0.4 5.3e-05 23.4 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain EnY2 PF10163.9 gi|330506815|ref|YP_004383243.1| - 0.052 13.9 0.1 0.12 12.8 0.1 1.6 1 0 0 1 1 1 0 Transcription factor e(y)2 Mad3_BUB1_I PF08311.12 gi|330506816|ref|YP_004383244.1| - 0.052 13.5 0.0 0.078 13.0 0.0 1.2 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 OrfB_Zn_ribbon PF07282.11 gi|330506817|ref|YP_004383245.1| - 2.4e-10 40.2 0.5 3.2e-10 39.8 0.5 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|330506817|ref|YP_004383245.1| - 0.0025 17.2 3.6 0.027 13.9 3.3 2.2 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|330506817|ref|YP_004383245.1| - 0.0029 17.6 0.1 0.0035 17.3 0.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|330506817|ref|YP_004383245.1| - 0.0091 16.1 0.2 0.013 15.6 0.2 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf_UBZ PF18439.1 gi|330506817|ref|YP_004383245.1| - 0.08 12.6 1.8 4.1 7.1 0.1 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-LITAF-like PF10601.9 gi|330506817|ref|YP_004383245.1| - 0.1 12.9 2.5 0.28 11.5 2.5 1.7 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain RecR PF02132.15 gi|330506817|ref|YP_004383245.1| - 0.11 12.0 2.6 2.2 7.9 0.2 2.2 1 1 1 2 2 2 0 RecR protein zinc_ribbon_2 PF13240.6 gi|330506817|ref|YP_004383245.1| - 0.22 11.3 4.0 3.2 7.6 0.8 2.2 1 1 1 2 2 1 0 zinc-ribbon domain DUF2072 PF09845.9 gi|330506817|ref|YP_004383245.1| - 0.26 11.6 0.6 0.33 11.2 0.6 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein DUF1610 PF07754.11 gi|330506817|ref|YP_004383245.1| - 0.4 10.7 3.5 1.2 9.1 3.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.7 gi|330506817|ref|YP_004383245.1| - 1.1 9.3 4.6 1.2 9.2 0.7 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF21 PF01595.20 gi|330506818|ref|YP_004383246.1| - 6e-56 188.9 4.7 8.6e-56 188.4 4.7 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|330506818|ref|YP_004383246.1| - 8.4e-24 83.4 0.6 1.8e-23 82.4 0.6 1.6 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|330506818|ref|YP_004383246.1| - 3.1e-13 50.0 1.7 8.1e-06 26.2 0.4 3.1 3 0 0 3 3 3 2 CBS domain HEPN_RES_NTD1 PF18870.1 gi|330506818|ref|YP_004383246.1| - 0.0017 18.6 0.3 0.0042 17.3 0.3 1.6 1 0 0 1 1 1 1 HEPN/RES N-terminal domain 1 Pyr_redox_2 PF07992.14 gi|330506819|ref|YP_004383247.1| - 3.5e-41 141.4 0.2 4.8e-41 140.9 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330506819|ref|YP_004383247.1| - 1.8e-15 57.3 0.2 1.2e-09 38.6 0.0 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|330506819|ref|YP_004383247.1| - 1.6e-12 47.7 0.0 4.8e-12 46.1 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 gi|330506819|ref|YP_004383247.1| - 1.2e-09 38.2 0.1 0.17 11.5 0.1 3.3 2 1 0 3 3 3 3 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|330506819|ref|YP_004383247.1| - 6.6e-06 25.1 0.0 0.0092 14.7 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_9 PF13454.6 gi|330506819|ref|YP_004383247.1| - 9.6e-06 25.7 0.0 0.13 12.3 0.0 3.3 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|330506819|ref|YP_004383247.1| - 1.1e-05 24.8 0.1 8.4e-05 22.0 0.0 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|330506819|ref|YP_004383247.1| - 0.0017 17.6 0.1 0.19 10.9 0.0 2.4 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Amino_oxidase PF01593.24 gi|330506819|ref|YP_004383247.1| - 0.0048 16.2 0.0 0.02 14.2 0.0 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Transposase_mut PF00872.18 gi|330506820|ref|YP_004383248.1| - 5.5e-101 338.2 0.2 6.2e-101 338.0 0.2 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|330506820|ref|YP_004383248.1| - 9.7e-10 38.7 0.0 1.6e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 MULE transposase domain HTH_26 PF13443.6 gi|330506820|ref|YP_004383248.1| - 0.071 13.6 0.0 0.48 10.9 0.0 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_12 PF08461.10 gi|330506820|ref|YP_004383248.1| - 0.084 12.8 0.9 0.31 11.0 0.1 2.4 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain DDE_Tnp_ISAZ013 PF07592.11 gi|330506821|ref|YP_004383249.1| - 3.9e-141 469.5 0.0 4.6e-141 469.2 0.0 1.0 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain HTH_Tnp_Tc3_2 PF01498.18 gi|330506821|ref|YP_004383249.1| - 2.8e-06 27.5 0.0 8.9e-06 25.9 0.0 1.9 1 0 0 1 1 1 1 Transposase HTH_21 PF13276.6 gi|330506821|ref|YP_004383249.1| - 0.00039 20.5 0.0 0.00091 19.3 0.0 1.6 1 0 0 1 1 1 1 HTH-like domain GSH-S_N PF02951.14 gi|330506821|ref|YP_004383249.1| - 0.0024 18.0 0.0 0.0038 17.3 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain HTH_32 PF13565.6 gi|330506821|ref|YP_004383249.1| - 0.0042 17.7 0.1 0.011 16.3 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain UPF0236 PF06782.11 gi|330506821|ref|YP_004383249.1| - 0.012 14.3 0.0 0.02 13.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0236) HTH_33 PF13592.6 gi|330506821|ref|YP_004383249.1| - 0.02 14.5 0.3 0.073 12.7 0.1 2.0 2 1 1 3 3 3 0 Winged helix-turn helix HTH_12 PF08461.10 gi|330506821|ref|YP_004383249.1| - 0.031 14.2 0.4 0.11 12.4 0.1 2.1 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_29 PF13551.6 gi|330506821|ref|YP_004383249.1| - 0.058 13.4 0.1 0.62 10.1 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix DDE_Tnp_1 PF01609.21 gi|330506822|ref|YP_004383250.1| - 7.7e-15 55.1 0.0 8e-14 51.8 0.0 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_IS66 PF03050.14 gi|330506823|ref|YP_004383251.1| - 1.6e-06 27.8 0.6 2.7e-05 23.8 0.6 2.1 1 1 0 1 1 1 1 Transposase IS66 family Zn_ribbon_recom PF13408.6 gi|330506823|ref|YP_004383251.1| - 0.14 12.7 4.6 0.18 12.3 2.2 2.4 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|330506823|ref|YP_004383251.1| - 0.15 12.2 0.7 7.5 6.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|330506823|ref|YP_004383251.1| - 0.21 11.2 0.6 12 5.6 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|330506823|ref|YP_004383251.1| - 0.27 11.3 2.8 1.3 9.1 3.1 1.9 1 1 1 2 2 2 0 Double zinc ribbon YhfH PF14149.6 gi|330506823|ref|YP_004383251.1| - 0.66 10.0 2.5 7.3 6.7 0.3 2.6 2 0 0 2 2 2 0 YhfH-like protein TF_Zn_Ribbon PF08271.12 gi|330506823|ref|YP_004383251.1| - 6.2 6.4 5.5 77 2.9 5.5 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding DDE_5 PF13546.6 gi|330506824|ref|YP_004383252.1| - 4.1e-15 55.8 0.0 6.9e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_2 PF04693.12 gi|330506824|ref|YP_004383252.1| - 1.5e-12 47.4 6.5 4.9e-11 42.4 6.4 2.3 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1 PF01609.21 gi|330506824|ref|YP_004383252.1| - 9.9e-08 31.9 0.9 1.4e-07 31.4 0.9 1.2 1 0 0 1 1 1 1 Transposase DDE domain SeqA PF03925.13 gi|330506824|ref|YP_004383252.1| - 0.034 14.1 0.1 0.084 12.8 0.1 1.6 1 0 0 1 1 1 0 SeqA protein C-terminal domain Colicin_M PF14859.6 gi|330506824|ref|YP_004383252.1| - 0.12 11.4 0.3 0.2 10.7 0.3 1.3 1 0 0 1 1 1 0 Colicin M Y1_Tnp PF01797.16 gi|330506825|ref|YP_004383253.1| - 9.4e-29 100.0 0.0 1.1e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 Transposase IS200 like Fer4_NifH PF00142.18 gi|330506826|ref|YP_004383254.1| - 1e-127 425.2 1.6 1.1e-127 425.1 1.6 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|330506826|ref|YP_004383254.1| - 1.5e-10 41.2 0.0 2.7e-10 40.4 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|330506826|ref|YP_004383254.1| - 2.4e-08 34.1 0.8 5.9e-08 32.8 0.4 1.8 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|330506826|ref|YP_004383254.1| - 1e-07 31.7 1.0 5.4e-06 26.0 0.2 2.3 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|330506826|ref|YP_004383254.1| - 1.4e-05 24.5 0.1 2.7e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|330506826|ref|YP_004383254.1| - 0.00029 20.4 0.4 0.67 9.4 0.1 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|330506826|ref|YP_004383254.1| - 0.0013 18.1 0.0 0.0025 17.2 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ MeaB PF03308.16 gi|330506826|ref|YP_004383254.1| - 0.0022 17.0 0.0 0.0033 16.4 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|330506826|ref|YP_004383254.1| - 0.0084 16.5 0.1 0.021 15.2 0.0 1.7 2 0 0 2 2 2 1 RNA helicase AAA_24 PF13479.6 gi|330506826|ref|YP_004383254.1| - 0.012 15.4 0.1 0.018 14.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|330506826|ref|YP_004383254.1| - 0.052 13.2 0.4 0.11 12.1 0.4 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Ku PF02735.16 gi|330506826|ref|YP_004383254.1| - 0.057 13.1 0.0 0.078 12.7 0.0 1.2 1 0 0 1 1 1 0 Ku70/Ku80 beta-barrel domain c-SKI_SMAD_bind PF08782.10 gi|330506826|ref|YP_004383254.1| - 0.076 13.3 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 c-SKI Smad4 binding domain DUF87 PF01935.17 gi|330506826|ref|YP_004383254.1| - 0.14 12.2 0.2 0.27 11.3 0.1 1.6 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_22 PF13401.6 gi|330506826|ref|YP_004383254.1| - 0.15 12.4 0.1 0.37 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|330506826|ref|YP_004383254.1| - 0.19 12.1 0.1 0.71 10.2 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain P-II PF00543.22 gi|330506827|ref|YP_004383255.1| - 1.5e-30 105.8 1.9 1.7e-30 105.6 1.9 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|330506827|ref|YP_004383255.1| - 0.007 16.6 0.4 0.04 14.1 0.4 2.0 1 1 0 1 1 1 1 Cyclic-di-AMP receptor P-II PF00543.22 gi|330506828|ref|YP_004383256.1| - 3.9e-30 104.5 0.4 5.6e-30 104.0 0.4 1.2 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.19 gi|330506829|ref|YP_004383257.1| - 2.1e-129 431.7 0.0 2.8e-129 431.4 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|330506830|ref|YP_004383258.1| - 2e-121 405.5 0.0 2.3e-121 405.3 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|330506831|ref|YP_004383259.1| - 1.9e-120 402.3 0.0 2.2e-120 402.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|330506832|ref|YP_004383260.1| - 3.8e-123 411.2 0.0 4.2e-123 411.0 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SBP_bac_11 PF13531.6 gi|330506833|ref|YP_004383261.1| - 6.1e-45 153.7 0.0 7.1e-45 153.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|330506833|ref|YP_004383261.1| - 4.7e-10 39.9 0.2 2.3e-09 37.7 0.2 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|330506833|ref|YP_004383261.1| - 2e-06 27.1 0.1 3.7e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_6 PF13343.6 gi|330506833|ref|YP_004383261.1| - 0.00018 21.0 0.1 0.00025 20.6 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein OpuAC PF04069.12 gi|330506833|ref|YP_004383261.1| - 0.024 14.2 0.1 0.092 12.3 0.0 1.9 3 0 0 3 3 3 0 Substrate binding domain of ABC-type glycine betaine transport system LPAM_1 PF08139.12 gi|330506833|ref|YP_004383261.1| - 0.19 12.3 2.0 0.45 11.1 2.0 1.7 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site BPD_transp_1 PF00528.22 gi|330506834|ref|YP_004383262.1| - 1.9e-18 66.9 18.2 1.9e-18 66.9 18.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF948 PF06103.11 gi|330506834|ref|YP_004383262.1| - 3.6 7.9 12.7 22 5.4 0.4 3.5 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) TMEM191C PF15194.6 gi|330506834|ref|YP_004383262.1| - 5.2 7.3 6.8 1.4 9.2 2.8 2.0 2 0 0 2 2 2 0 TMEM191C family ABC_tran PF00005.27 gi|330506835|ref|YP_004383263.1| - 1.6e-33 116.2 0.0 2.1e-33 115.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330506835|ref|YP_004383263.1| - 2.2e-08 34.3 0.4 0.0014 18.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330506835|ref|YP_004383263.1| - 0.00037 20.0 0.0 0.29 10.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|330506835|ref|YP_004383263.1| - 0.0041 17.5 0.1 0.0061 17.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|330506835|ref|YP_004383263.1| - 0.009 15.8 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|330506835|ref|YP_004383263.1| - 0.0099 15.8 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase NACHT PF05729.12 gi|330506835|ref|YP_004383263.1| - 0.011 15.7 0.1 0.23 11.4 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|330506835|ref|YP_004383263.1| - 0.016 15.5 0.1 0.059 13.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|330506835|ref|YP_004383263.1| - 0.024 15.1 0.0 0.037 14.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|330506835|ref|YP_004383263.1| - 0.024 14.4 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|330506835|ref|YP_004383263.1| - 0.034 13.7 0.0 0.064 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|330506835|ref|YP_004383263.1| - 0.06 12.9 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|330506835|ref|YP_004383263.1| - 0.061 13.8 0.0 0.25 11.8 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Rop PF01815.16 gi|330506835|ref|YP_004383263.1| - 0.11 12.3 0.2 0.19 11.6 0.2 1.3 1 0 0 1 1 1 0 Rop protein Roc PF08477.13 gi|330506835|ref|YP_004383263.1| - 0.13 12.5 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|330506835|ref|YP_004383263.1| - 0.15 11.8 0.1 0.41 10.4 0.1 1.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_ATPase PF09818.9 gi|330506835|ref|YP_004383263.1| - 0.21 10.3 0.0 9.9 4.8 0.0 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class DLIC PF05783.11 gi|330506835|ref|YP_004383263.1| - 0.27 10.0 0.1 0.38 9.5 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Zeta_toxin PF06414.12 gi|330506835|ref|YP_004383263.1| - 0.27 10.5 0.6 0.89 8.8 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin S-layer PF07752.11 gi|330506836|ref|YP_004383264.1| - 4.8e-128 425.6 14.3 2.3e-23 82.6 0.0 6.0 1 1 5 6 6 6 6 S-layer protein PrcB_C PF14343.6 gi|330506836|ref|YP_004383264.1| - 2.1e-06 27.8 2.7 0.41 10.8 0.0 5.5 5 0 0 5 5 5 2 PrcB C-terminal GvpD PF07088.11 gi|330506836|ref|YP_004383264.1| - 0.0002 20.1 1.6 0.37 9.4 0.1 3.9 4 0 0 4 4 4 2 GvpD gas vesicle protein DUF3876 PF12992.7 gi|330506836|ref|YP_004383264.1| - 0.0005 20.1 0.0 2.2 8.4 0.0 4.2 4 0 0 4 4 4 1 Domain of unknown function, B. Theta Gene description (DUF3876) GUN4 PF05419.12 gi|330506836|ref|YP_004383264.1| - 0.0081 16.2 0.0 1.5 8.9 0.0 3.5 4 0 0 4 4 4 1 GUN4-like DUF2140 PF09911.9 gi|330506836|ref|YP_004383264.1| - 0.094 12.3 0.4 9.8 5.7 0.1 2.9 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2140) His_biosynth PF00977.21 gi|330506837|ref|YP_004383265.1| - 1.5e-76 256.8 0.3 1.8e-76 256.6 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|330506837|ref|YP_004383265.1| - 3.3e-08 33.3 1.4 4.5e-05 23.0 0.3 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|330506837|ref|YP_004383265.1| - 9.3e-08 31.7 0.4 0.00025 20.5 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|330506837|ref|YP_004383265.1| - 4.5e-07 29.3 0.0 6.2e-05 22.2 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 gi|330506837|ref|YP_004383265.1| - 1.9e-05 24.1 0.3 0.1 11.9 0.1 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase IMPDH PF00478.25 gi|330506837|ref|YP_004383265.1| - 0.00051 19.1 0.5 0.019 14.0 0.2 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|330506837|ref|YP_004383265.1| - 0.016 14.6 0.3 0.18 11.2 0.1 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|330506837|ref|YP_004383265.1| - 0.055 12.3 0.1 0.085 11.7 0.1 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain OrfB_IS605 PF01385.19 gi|330506838|ref|YP_004383266.1| - 5.7e-22 78.2 0.0 1.2e-21 77.2 0.0 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|330506838|ref|YP_004383266.1| - 1.4e-21 76.2 0.1 3.5e-21 74.9 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|330506838|ref|YP_004383266.1| - 2.5e-19 68.5 2.3 5.3e-19 67.4 2.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|330506838|ref|YP_004383266.1| - 0.011 15.7 0.2 0.02 14.9 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon RecR PF02132.15 gi|330506838|ref|YP_004383266.1| - 1.7 8.3 4.7 16 5.1 0.1 3.1 2 1 1 3 3 3 0 RecR protein Ammonium_transp PF00909.21 gi|330506839|ref|YP_004383267.1| - 2.2e-26 92.5 12.1 3.1e-26 92.0 12.1 1.2 1 0 0 1 1 1 1 Ammonium Transporter Family Connexin PF00029.19 gi|330506839|ref|YP_004383267.1| - 0.066 13.0 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Connexin TrbC PF04956.13 gi|330506839|ref|YP_004383267.1| - 0.4 10.9 20.4 3 8.1 10.2 3.7 2 1 0 2 2 2 0 TrbC/VIRB2 family DUF772 PF05598.11 gi|330506840|ref|YP_004383268.1| - 3.4e-23 81.4 0.0 6.3e-23 80.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|330506840|ref|YP_004383268.1| - 3e-17 63.0 0.7 6.5e-17 61.9 0.7 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|330506840|ref|YP_004383268.1| - 4.6e-06 26.4 0.3 1.6e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.6 gi|330506840|ref|YP_004383268.1| - 1.9e-05 24.7 0.1 4.9e-05 23.4 0.1 1.6 1 1 0 1 1 1 1 Transposase DDE domain DUF3502 PF12010.8 gi|330506840|ref|YP_004383268.1| - 0.055 14.1 0.0 0.23 12.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3502) DUF5315 PF17242.2 gi|330506840|ref|YP_004383268.1| - 0.1 12.4 0.1 0.29 11.0 0.1 1.8 1 0 0 1 1 1 0 Disordered region of unknown function (DUF5315) Ammonium_transp PF00909.21 gi|330506841|ref|YP_004383269.1| - 1.4e-76 257.8 15.2 1.5e-76 257.6 15.2 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PEP_hydrolase PF09370.10 gi|330506841|ref|YP_004383269.1| - 0.022 14.0 0.2 0.032 13.5 0.2 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like LapA_dom PF06305.11 gi|330506841|ref|YP_004383269.1| - 0.64 9.9 0.0 0.64 9.9 0.0 3.3 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain PAP2 PF01569.21 gi|330506841|ref|YP_004383269.1| - 6 6.6 9.4 3.3 7.5 6.5 2.1 2 1 0 2 2 2 0 PAP2 superfamily P-II PF00543.22 gi|330506842|ref|YP_004383270.1| - 1.8e-40 137.7 1.4 2e-40 137.5 1.4 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|330506842|ref|YP_004383270.1| - 0.0046 17.1 0.4 0.098 12.9 0.4 2.5 1 1 0 1 1 1 1 Cyclic-di-AMP receptor MFS_1 PF07690.16 gi|330506844|ref|YP_004383272.1| - 2.6e-07 29.9 19.2 3.7e-07 29.4 19.2 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily AftA_N PF12250.8 gi|330506844|ref|YP_004383272.1| - 0.073 11.8 7.2 0.01 14.6 3.1 1.6 2 0 0 2 2 2 0 Arabinofuranosyltransferase N terminal TMEM174 PF15029.6 gi|330506844|ref|YP_004383272.1| - 0.098 12.4 0.5 0.17 11.6 0.4 1.4 1 1 0 1 1 1 0 Transmembrane protein 174 rve_2 PF13333.6 gi|330506845|ref|YP_004383273.1| - 1.3e-07 31.7 0.9 1.8e-07 31.2 0.9 1.1 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|330506845|ref|YP_004383273.1| - 7.1e-06 25.7 0.0 9.2e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 gi|330506846|ref|YP_004383274.1| - 1.6e-06 27.8 0.6 2.7e-05 23.8 0.6 2.1 1 1 0 1 1 1 1 Transposase IS66 family Zn_ribbon_recom PF13408.6 gi|330506846|ref|YP_004383274.1| - 0.14 12.7 4.6 0.18 12.3 2.2 2.4 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|330506846|ref|YP_004383274.1| - 0.15 12.2 0.7 7.5 6.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|330506846|ref|YP_004383274.1| - 0.21 11.2 0.6 12 5.6 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|330506846|ref|YP_004383274.1| - 0.27 11.3 2.8 1.3 9.1 3.1 1.9 1 1 1 2 2 2 0 Double zinc ribbon YhfH PF14149.6 gi|330506846|ref|YP_004383274.1| - 0.66 10.0 2.5 7.3 6.7 0.3 2.6 2 0 0 2 2 2 0 YhfH-like protein TF_Zn_Ribbon PF08271.12 gi|330506846|ref|YP_004383274.1| - 6.2 6.4 5.5 77 2.9 5.5 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding rve PF00665.26 gi|330506847|ref|YP_004383275.1| - 6.1e-25 87.7 0.0 9.4e-25 87.1 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 gi|330506847|ref|YP_004383275.1| - 7.8e-19 67.6 0.3 1.5e-18 66.7 0.3 1.5 1 0 0 1 1 1 1 HTH-like domain rve_3 PF13683.6 gi|330506847|ref|YP_004383275.1| - 1.8e-05 24.4 0.0 5.3e-05 22.9 0.0 1.8 1 0 0 1 1 1 1 Integrase core domain HTH_Tnp_Tc3_2 PF01498.18 gi|330506847|ref|YP_004383275.1| - 0.033 14.4 0.0 0.086 13.1 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_Tnp_1_2 PF13022.6 gi|330506847|ref|YP_004383275.1| - 0.066 13.4 0.0 0.18 12.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_Tnp_1 PF01527.20 gi|330506848|ref|YP_004383276.1| - 9.9e-11 41.8 0.1 1.6e-10 41.1 0.0 1.5 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.6 gi|330506848|ref|YP_004383276.1| - 0.002 17.8 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|330506848|ref|YP_004383276.1| - 0.0046 17.0 0.0 0.0099 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PKcGMP_CC PF16808.5 gi|330506848|ref|YP_004383276.1| - 0.033 14.1 0.3 0.074 12.9 0.3 1.6 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4733 PF15878.5 gi|330506848|ref|YP_004383276.1| - 0.062 13.8 0.1 0.13 12.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4733) Transposase_mut PF00872.18 gi|330506849|ref|YP_004383277.1| - 1.4e-19 70.2 0.1 1.5e-19 70.1 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family DDE_Tnp_IS240 PF13610.6 gi|330506849|ref|YP_004383277.1| - 0.032 14.4 0.0 0.037 14.2 0.0 1.2 1 0 0 1 1 1 0 DDE domain Transposase_mut PF00872.18 gi|330506850|ref|YP_004383278.1| - 7.1e-12 44.9 0.0 8.2e-12 44.7 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family Transposase_mut PF00872.18 gi|330506851|ref|YP_004383279.1| - 1.7e-50 172.0 0.0 1.9e-50 171.8 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family HTH_26 PF13443.6 gi|330506851|ref|YP_004383279.1| - 0.017 15.6 0.0 0.033 14.6 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain mRNA_decap_C PF16741.5 gi|330506851|ref|YP_004383279.1| - 0.11 11.9 0.2 9.5 5.6 0.0 2.7 3 0 0 3 3 3 0 mRNA-decapping enzyme C-terminus UPF0158 PF03682.13 gi|330506852|ref|YP_004383280.1| - 1.5e-05 25.0 3.4 1.8e-05 24.8 3.4 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0158) Ribosomal_S13 PF00416.22 gi|330506853|ref|YP_004383281.1| - 7e-39 133.2 1.6 8.7e-39 132.8 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.25 gi|330506854|ref|YP_004383282.1| - 8.5e-14 51.0 0.2 1.9e-13 49.9 0.2 1.7 1 0 0 1 1 1 1 S4 domain Ribosomal_S11 PF00411.19 gi|330506855|ref|YP_004383283.1| - 2.4e-46 156.6 3.2 3.6e-46 156.1 3.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|330506855|ref|YP_004383283.1| - 0.031 14.0 0.6 0.038 13.7 0.6 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) RNA_pol_A_bac PF01000.26 gi|330506856|ref|YP_004383284.1| - 1.1e-21 77.4 0.0 1.8e-20 73.4 0.0 2.2 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|330506856|ref|YP_004383284.1| - 8.1e-12 44.4 0.0 1e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_9 PF13187.6 gi|330506856|ref|YP_004383284.1| - 3.2e-08 33.6 22.5 9.5e-06 25.7 11.5 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330506856|ref|YP_004383284.1| - 8.8e-08 31.7 15.1 9.6e-06 25.2 4.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330506856|ref|YP_004383284.1| - 3.5e-05 24.0 2.1 6.6e-05 23.1 2.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330506856|ref|YP_004383284.1| - 3.9e-05 23.7 10.2 3.9e-05 23.7 10.2 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330506856|ref|YP_004383284.1| - 0.00013 21.8 3.7 0.00013 21.8 3.7 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330506856|ref|YP_004383284.1| - 0.00094 19.1 4.2 0.00094 19.1 4.2 3.2 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330506856|ref|YP_004383284.1| - 0.001 19.6 11.1 0.001 19.6 11.1 2.7 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330506856|ref|YP_004383284.1| - 0.0011 19.8 12.7 0.0068 17.3 1.3 2.7 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|330506856|ref|YP_004383284.1| - 0.0017 19.2 3.6 0.0017 19.2 3.6 3.2 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330506856|ref|YP_004383284.1| - 0.004 17.6 10.7 1 9.8 7.1 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330506856|ref|YP_004383284.1| - 0.0062 17.0 2.7 0.0062 17.0 2.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330506856|ref|YP_004383284.1| - 0.023 15.3 0.6 0.023 15.3 0.6 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330506856|ref|YP_004383284.1| - 0.034 15.0 0.7 0.034 15.0 0.7 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330506856|ref|YP_004383284.1| - 5.5 7.8 12.6 0.35 11.6 2.5 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Sigma70_r4_2 PF08281.12 gi|330506858|ref|YP_004383286.1| - 1.7e-07 30.8 0.1 3.1e-07 30.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.15 gi|330506858|ref|YP_004383286.1| - 1.7e-06 28.0 0.2 3.8e-06 26.9 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|330506858|ref|YP_004383286.1| - 1.5e-05 24.6 0.0 2.6e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Mga PF08280.11 gi|330506858|ref|YP_004383286.1| - 0.00036 20.5 0.0 0.00062 19.7 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_22 PF13309.6 gi|330506858|ref|YP_004383286.1| - 0.00058 19.9 0.4 0.0016 18.5 0.1 1.8 2 0 0 2 2 2 1 HTH domain HTH_38 PF13936.6 gi|330506858|ref|YP_004383286.1| - 0.0015 18.3 0.1 0.0038 17.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_30 PF13556.6 gi|330506858|ref|YP_004383286.1| - 0.0019 17.9 0.0 0.0047 16.7 0.0 1.6 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain FHIPEP PF00771.20 gi|330506858|ref|YP_004383286.1| - 0.0022 16.5 0.6 0.0026 16.3 0.6 1.0 1 0 0 1 1 1 1 FHIPEP family Sigma70_r4 PF04545.16 gi|330506858|ref|YP_004383286.1| - 0.0027 17.2 0.2 0.0058 16.1 0.0 1.6 2 0 0 2 2 1 1 Sigma-70, region 4 GerE PF00196.19 gi|330506858|ref|YP_004383286.1| - 0.0036 16.8 0.2 0.0059 16.1 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_50 PF18024.1 gi|330506858|ref|YP_004383286.1| - 0.004 16.7 0.6 0.0065 16.1 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain SF3A3 PF16837.5 gi|330506858|ref|YP_004383286.1| - 0.0051 17.3 0.1 0.0088 16.5 0.1 1.4 1 1 0 1 1 1 1 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 NUMOD1 PF07453.13 gi|330506858|ref|YP_004383286.1| - 0.0094 16.2 0.6 0.02 15.2 0.6 1.5 1 0 0 1 1 1 1 NUMOD1 domain TnsD PF15978.5 gi|330506858|ref|YP_004383286.1| - 0.0099 14.9 0.2 0.01 14.9 0.2 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_28 PF13518.6 gi|330506858|ref|YP_004383286.1| - 0.012 15.7 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_int_SAM_1 PF02899.17 gi|330506858|ref|YP_004383286.1| - 0.014 15.7 0.1 0.021 15.1 0.1 1.4 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain HTH_40 PF14493.6 gi|330506858|ref|YP_004383286.1| - 0.02 15.3 0.1 0.028 14.9 0.1 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain Recombinase PF07508.13 gi|330506858|ref|YP_004383286.1| - 0.021 15.2 0.3 0.11 12.9 0.3 2.3 1 1 0 1 1 1 0 Recombinase HTH_36 PF13730.6 gi|330506858|ref|YP_004383286.1| - 0.021 14.7 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_NinH PF06322.11 gi|330506858|ref|YP_004383286.1| - 0.024 14.5 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 Phage NinH protein DUF2089 PF09862.9 gi|330506858|ref|YP_004383286.1| - 0.03 14.3 0.4 0.038 14.0 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_11 PF08279.12 gi|330506858|ref|YP_004383286.1| - 0.031 14.2 0.3 0.057 13.4 0.1 1.6 2 0 0 2 2 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|330506858|ref|YP_004383286.1| - 0.034 14.1 0.0 1.8 8.6 0.0 2.2 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|330506858|ref|YP_004383286.1| - 0.035 13.9 0.0 0.075 12.8 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain Seryl_tRNA_N PF02403.22 gi|330506858|ref|YP_004383286.1| - 0.038 14.2 0.3 0.044 14.0 0.3 1.2 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain YdaS_antitoxin PF15943.5 gi|330506858|ref|YP_004383286.1| - 0.073 12.9 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Mga PF05043.13 gi|330506858|ref|YP_004383286.1| - 0.075 13.6 0.2 0.12 12.9 0.2 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|330506858|ref|YP_004383286.1| - 0.079 13.3 0.1 0.098 13.0 0.1 1.4 1 1 0 1 1 1 0 Transposase HTH_Tnp_ISL3 PF13542.6 gi|330506858|ref|YP_004383286.1| - 0.083 12.3 0.0 0.36 10.3 0.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 gi|330506858|ref|YP_004383286.1| - 0.091 12.3 0.1 0.25 10.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding BrkDBD PF09607.10 gi|330506858|ref|YP_004383286.1| - 0.12 12.2 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Brinker DNA-binding domain HTH_3 PF01381.22 gi|330506858|ref|YP_004383286.1| - 0.12 12.4 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix rve PF00665.26 gi|330506859|ref|YP_004383287.1| - 4.8e-14 52.6 0.0 6.7e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|330506860|ref|YP_004383288.1| - 1.5e-15 57.5 0.0 2.9e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|330506860|ref|YP_004383288.1| - 5.5e-06 26.0 0.2 1.2e-05 24.9 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|330506860|ref|YP_004383288.1| - 6e-06 25.9 0.7 0.00015 21.5 0.2 3.1 2 1 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 gi|330506860|ref|YP_004383288.1| - 1.9e-05 24.7 6.0 0.00012 22.2 0.7 3.4 3 1 0 3 3 3 1 HTH-like domain HTH_29 PF13551.6 gi|330506860|ref|YP_004383288.1| - 6.8e-05 22.8 0.0 0.00013 21.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|330506860|ref|YP_004383288.1| - 0.00046 20.3 0.3 0.00046 20.3 0.3 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.6 gi|330506860|ref|YP_004383288.1| - 0.0018 18.9 0.1 0.0048 17.5 0.1 1.8 1 1 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|330506860|ref|YP_004383288.1| - 0.0083 15.7 1.6 0.1 12.3 0.1 2.7 3 0 0 3 3 3 1 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 gi|330506860|ref|YP_004383288.1| - 0.0098 15.3 0.1 0.024 14.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 gi|330506860|ref|YP_004383288.1| - 0.019 14.9 0.2 0.037 14.0 0.2 1.4 1 0 0 1 1 1 0 HTH domain PAX PF00292.18 gi|330506860|ref|YP_004383288.1| - 0.022 14.7 0.1 0.049 13.5 0.1 1.6 2 0 0 2 2 2 0 'Paired box' domain RNase_E_G PF10150.9 gi|330506860|ref|YP_004383288.1| - 0.073 12.5 0.5 0.096 12.1 0.5 1.2 1 0 0 1 1 1 0 Ribonuclease E/G family RPA_C PF08784.11 gi|330506860|ref|YP_004383288.1| - 0.16 12.7 0.1 0.25 12.0 0.1 1.3 1 0 0 1 1 1 0 Replication protein A C terminal Peripla_BP_2 PF01497.18 gi|330506863|ref|YP_004383291.1| - 1.2e-40 139.5 0.0 1.5e-40 139.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein CbiC PF02570.15 gi|330506864|ref|YP_004383292.1| - 3.1e-58 196.7 0.8 3.5e-58 196.5 0.8 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase Peptidase_C13 PF01650.18 gi|330506865|ref|YP_004383293.1| - 8.7e-10 38.5 0.0 3.7e-08 33.2 0.0 2.4 2 1 0 2 2 2 1 Peptidase C13 family Peptidase_C14 PF00656.22 gi|330506865|ref|YP_004383293.1| - 2.6e-08 34.2 0.0 5.6e-08 33.0 0.0 1.6 2 0 0 2 2 2 1 Caspase domain EF-hand_5 PF13202.6 gi|330506865|ref|YP_004383293.1| - 0.13 11.8 0.1 0.28 10.8 0.1 1.6 1 0 0 1 1 1 0 EF hand Peripla_BP_2 PF01497.18 gi|330506867|ref|YP_004383295.1| - 1.4e-29 103.4 0.0 2e-29 102.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DDE_Tnp_1 PF01609.21 gi|330506868|ref|YP_004383296.1| - 1.9e-25 89.8 0.0 3.3e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|330506868|ref|YP_004383296.1| - 0.014 14.7 0.3 0.021 14.1 0.3 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|330506868|ref|YP_004383296.1| - 0.019 13.3 0.0 0.03 12.6 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 Tudor_FRX1 PF18336.1 gi|330506868|ref|YP_004383296.1| - 0.075 13.0 1.0 1.4 8.9 0.1 2.8 3 0 0 3 3 3 0 Fragile X mental retardation Tudor domain CobN-Mg_chel PF02514.16 gi|330506869|ref|YP_004383297.1| - 0 1394.1 0.0 0 1393.9 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|330506869|ref|YP_004383297.1| - 0.071 12.9 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain Peripla_BP_2 PF01497.18 gi|330506870|ref|YP_004383298.1| - 9.9e-21 74.4 0.0 1.2e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|330506871|ref|YP_004383299.1| - 1.2e-36 126.4 0.5 1.5e-36 126.2 0.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Rh5 PF18515.1 gi|330506871|ref|YP_004383299.1| - 0.0003 20.2 0.3 0.00049 19.5 0.3 1.2 1 0 0 1 1 1 1 Rh5 coiled-coil domain DUF2800 PF10926.8 gi|330506871|ref|YP_004383299.1| - 0.17 11.1 0.0 0.31 10.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) Peripla_BP_2 PF01497.18 gi|330506872|ref|YP_004383300.1| - 6.8e-34 117.5 0.0 8.2e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF2102 PF09875.9 gi|330506873|ref|YP_004383301.1| - 3.6e-31 106.9 0.0 5.5e-26 90.3 0.0 2.0 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2102) CbiZ PF01955.18 gi|330506874|ref|YP_004383302.1| - 1.5e-63 214.4 0.8 2e-63 214.0 0.8 1.2 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase CN_hydrolase PF00795.22 gi|330506875|ref|YP_004383303.1| - 9.4e-66 221.8 0.0 3.2e-41 141.4 0.0 2.0 2 0 0 2 2 2 2 Carbon-nitrogen hydrolase CobN-Mg_chel PF02514.16 gi|330506876|ref|YP_004383304.1| - 0 1375.9 0.0 0 1375.6 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|330506876|ref|YP_004383304.1| - 0.045 13.5 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain Radical_SAM PF04055.21 gi|330506877|ref|YP_004383305.1| - 7.7e-13 49.2 0.0 2e-12 47.8 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330506877|ref|YP_004383305.1| - 4.9e-07 30.1 0.0 1.1e-06 28.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330506877|ref|YP_004383305.1| - 6.6e-06 26.3 0.0 2e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|330506877|ref|YP_004383305.1| - 0.0094 16.4 0.1 0.025 15.1 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain DHquinase_II PF01220.19 gi|330506878|ref|YP_004383306.1| - 0.0079 15.9 0.1 0.011 15.4 0.1 1.3 1 1 0 1 1 1 1 Dehydroquinase class II DUF4349 PF14257.6 gi|330506878|ref|YP_004383306.1| - 0.32 10.4 2.4 0.46 9.9 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) FecCD PF01032.18 gi|330506879|ref|YP_004383307.1| - 1.9e-92 309.7 35.6 2.2e-92 309.4 35.6 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|330506880|ref|YP_004383308.1| - 3e-33 115.2 0.0 4.3e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330506880|ref|YP_004383308.1| - 1e-10 41.9 1.2 0.00015 21.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330506880|ref|YP_004383308.1| - 1.8e-05 24.3 0.5 0.0013 18.2 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|330506880|ref|YP_004383308.1| - 3e-05 23.9 0.2 0.00041 20.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|330506880|ref|YP_004383308.1| - 0.00015 22.2 0.0 0.00026 21.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|330506880|ref|YP_004383308.1| - 0.00022 21.5 1.8 0.0047 17.2 1.8 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|330506880|ref|YP_004383308.1| - 0.00077 19.2 0.1 0.0016 18.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|330506880|ref|YP_004383308.1| - 0.00089 19.8 0.0 0.0016 19.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|330506880|ref|YP_004383308.1| - 0.0017 17.1 0.1 0.5 8.9 0.0 2.0 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|330506880|ref|YP_004383308.1| - 0.0049 16.3 0.1 0.032 13.6 0.0 2.1 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|330506880|ref|YP_004383308.1| - 0.0082 15.9 0.0 0.013 15.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|330506880|ref|YP_004383308.1| - 0.012 16.0 0.4 0.13 12.7 0.4 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|330506880|ref|YP_004383308.1| - 0.012 15.5 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|330506880|ref|YP_004383308.1| - 0.017 15.1 0.1 1 9.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|330506880|ref|YP_004383308.1| - 0.017 15.3 0.2 0.31 11.3 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit APS_kinase PF01583.20 gi|330506880|ref|YP_004383308.1| - 0.023 14.6 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase TniB PF05621.11 gi|330506880|ref|YP_004383308.1| - 0.025 14.0 0.7 0.81 9.1 0.2 2.1 2 0 0 2 2 2 0 Bacterial TniB protein NB-ARC PF00931.22 gi|330506880|ref|YP_004383308.1| - 0.029 13.6 0.4 0.075 12.2 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain SRP54 PF00448.22 gi|330506880|ref|YP_004383308.1| - 0.033 13.8 0.3 0.1 12.2 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|330506880|ref|YP_004383308.1| - 0.034 14.3 0.1 0.088 13.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|330506880|ref|YP_004383308.1| - 0.034 14.1 0.0 0.84 9.5 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|330506880|ref|YP_004383308.1| - 0.049 13.4 0.0 0.083 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|330506880|ref|YP_004383308.1| - 0.058 13.3 0.8 0.54 10.1 0.1 2.1 2 0 0 2 2 2 0 NTPase ABC_ATPase PF09818.9 gi|330506880|ref|YP_004383308.1| - 0.059 12.1 0.2 1.9 7.2 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_14 PF13173.6 gi|330506880|ref|YP_004383308.1| - 0.06 13.4 0.0 0.4 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|330506880|ref|YP_004383308.1| - 0.064 13.6 0.2 0.13 12.6 0.2 1.6 1 1 0 1 1 1 0 AAA domain RNA12 PF10443.9 gi|330506880|ref|YP_004383308.1| - 0.092 11.5 0.0 0.17 10.6 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein cobW PF02492.19 gi|330506880|ref|YP_004383308.1| - 0.1 12.2 0.6 0.2 11.2 0.2 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|330506880|ref|YP_004383308.1| - 0.12 12.3 0.1 0.23 11.4 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|330506880|ref|YP_004383308.1| - 0.14 11.9 0.3 0.31 10.8 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_7 PF12775.7 gi|330506880|ref|YP_004383308.1| - 0.15 11.5 0.1 0.37 10.3 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region G-alpha PF00503.20 gi|330506880|ref|YP_004383308.1| - 0.22 10.6 0.0 0.32 10.1 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit AAA_lid_2 PF17863.1 gi|330506881|ref|YP_004383309.1| - 9.2e-22 76.7 0.1 3.2e-21 74.9 0.1 2.0 1 0 0 1 1 1 1 AAA lid domain VWA_2 PF13519.6 gi|330506881|ref|YP_004383309.1| - 3.6e-15 56.5 0.1 2.7e-14 53.7 0.0 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|330506881|ref|YP_004383309.1| - 6.6e-11 42.8 0.0 3.8e-10 40.3 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|330506881|ref|YP_004383309.1| - 3.3e-10 40.1 0.0 4.3e-06 26.8 0.0 2.7 1 1 0 2 2 2 2 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|330506881|ref|YP_004383309.1| - 1.9e-09 37.2 0.0 8.2e-07 28.6 0.0 2.8 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|330506881|ref|YP_004383309.1| - 7.4e-05 21.9 0.2 0.005 16.0 0.1 3.0 2 2 0 2 2 2 1 MCM P-loop domain Coilin_N PF15862.5 gi|330506881|ref|YP_004383309.1| - 0.00055 19.8 0.0 0.0018 18.1 0.0 2.0 1 1 0 1 1 1 1 Coilin N-terminus VWA_CoxE PF05762.14 gi|330506881|ref|YP_004383309.1| - 0.00058 19.3 0.1 0.0013 18.1 0.1 1.5 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein AAA_16 PF13191.6 gi|330506881|ref|YP_004383309.1| - 0.00081 19.8 0.0 0.00081 19.8 0.0 2.4 2 1 0 2 2 1 1 AAA ATPase domain TFIIA PF03153.13 gi|330506881|ref|YP_004383309.1| - 0.0016 18.5 17.8 0.0021 18.1 17.8 1.2 1 0 0 1 1 1 1 Transcription factor IIA, alpha/beta subunit Sigma54_activat PF00158.26 gi|330506881|ref|YP_004383309.1| - 0.0084 15.8 0.0 0.32 10.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain Spt20 PF12090.8 gi|330506881|ref|YP_004383309.1| - 0.011 15.3 20.1 0.019 14.6 20.1 1.3 1 0 0 1 1 1 0 Spt20 family Fer4_11 PF13247.6 gi|330506881|ref|YP_004383309.1| - 0.033 14.3 0.1 0.13 12.4 0.1 2.0 2 0 0 2 2 1 0 4Fe-4S dicluster domain AAA_22 PF13401.6 gi|330506881|ref|YP_004383309.1| - 0.034 14.4 0.0 0.17 12.2 0.0 2.2 1 1 0 1 1 1 0 AAA domain GREB1 PF15782.5 gi|330506881|ref|YP_004383309.1| - 0.072 10.2 7.0 0.09 9.9 7.0 1.0 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer AAA_3 PF07726.11 gi|330506881|ref|YP_004383309.1| - 0.078 12.8 0.0 3.8 7.4 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RNA_pol_Rpc4 PF05132.14 gi|330506881|ref|YP_004383309.1| - 0.096 13.1 10.0 0.34 11.3 10.0 1.9 1 0 0 1 1 1 0 RNA polymerase III RPC4 AAA PF00004.29 gi|330506881|ref|YP_004383309.1| - 0.097 13.1 0.1 1 9.8 0.0 2.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) CPSF100_C PF13299.6 gi|330506881|ref|YP_004383309.1| - 0.21 11.8 5.4 0.44 10.7 5.4 1.6 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal DDHD PF02862.17 gi|330506881|ref|YP_004383309.1| - 0.23 11.6 7.3 0.36 11.0 7.3 1.3 1 0 0 1 1 1 0 DDHD domain MMR1 PF08505.10 gi|330506881|ref|YP_004383309.1| - 0.64 10.3 14.7 1 9.6 14.7 1.2 1 0 0 1 1 1 0 Mitochondrial Myo2 receptor-related protein Roughex PF06020.11 gi|330506881|ref|YP_004383309.1| - 0.68 9.0 11.1 1.2 8.1 11.1 1.3 1 0 0 1 1 1 0 Drosophila roughex protein CCDC53 PF10152.9 gi|330506881|ref|YP_004383309.1| - 1.3 9.4 13.9 2.9 8.3 13.9 1.6 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex Presenilin PF01080.17 gi|330506881|ref|YP_004383309.1| - 1.5 7.5 13.5 2.1 7.0 13.5 1.2 1 0 0 1 1 1 0 Presenilin Hep_59 PF07052.11 gi|330506881|ref|YP_004383309.1| - 1.5 9.6 16.6 0.48 11.2 13.0 2.0 2 0 0 2 2 1 0 Hepatocellular carcinoma-associated antigen 59 SpoIIP PF07454.11 gi|330506881|ref|YP_004383309.1| - 1.5 8.2 12.8 2.5 7.5 12.8 1.3 1 0 0 1 1 1 0 Stage II sporulation protein P (SpoIIP) SID-1_RNA_chan PF13965.6 gi|330506881|ref|YP_004383309.1| - 1.9 6.8 4.2 2.5 6.4 4.2 1.1 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 Peptidase_S49_N PF08496.10 gi|330506881|ref|YP_004383309.1| - 2.7 8.0 12.1 21 5.2 0.0 2.5 2 0 0 2 2 2 0 Peptidase family S49 N-terminal Endostatin PF06482.11 gi|330506881|ref|YP_004383309.1| - 3.3 7.1 9.7 5.6 6.3 9.7 1.3 1 0 0 1 1 1 0 Collagenase NC10 and Endostatin DUF908 PF06012.12 gi|330506881|ref|YP_004383309.1| - 3.8 6.8 10.8 6 6.2 10.8 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF908) RR_TM4-6 PF06459.12 gi|330506881|ref|YP_004383309.1| - 6.2 6.6 16.4 12 5.6 16.4 1.4 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 SLC12 PF03522.15 gi|330506881|ref|YP_004383309.1| - 6.9 5.6 12.1 11 5.0 12.1 1.2 1 0 0 1 1 1 0 Solute carrier family 12 Ndc1_Nup PF09531.10 gi|330506881|ref|YP_004383309.1| - 7.2 5.2 10.5 9.9 4.7 10.5 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF5427 PF10310.9 gi|330506881|ref|YP_004383309.1| - 8.8 5.2 19.5 14 4.5 19.5 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5427) Gti1_Pac2 PF09729.9 gi|330506881|ref|YP_004383309.1| - 9.3 6.3 8.7 17 5.5 8.7 1.4 1 0 0 1 1 1 0 Gti1/Pac2 family Neur_chan_memb PF02932.16 gi|330506881|ref|YP_004383309.1| - 9.4 6.2 9.3 16 5.5 9.3 1.4 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Hid1 PF12722.7 gi|330506881|ref|YP_004383309.1| - 9.9 4.1 15.2 14 3.6 15.2 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein ABC_tran PF00005.27 gi|330506882|ref|YP_004383310.1| - 1.8e-31 109.5 0.0 2.7e-31 108.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330506882|ref|YP_004383310.1| - 2.4e-15 57.1 0.0 3.8e-08 33.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|330506882|ref|YP_004383310.1| - 3.6e-05 23.6 0.0 0.15 11.8 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|330506882|ref|YP_004383310.1| - 0.00018 21.0 0.0 0.00034 20.1 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|330506882|ref|YP_004383310.1| - 0.0018 18.8 0.6 0.0029 18.1 0.6 1.4 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|330506882|ref|YP_004383310.1| - 0.0044 16.7 0.2 0.011 15.3 0.2 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|330506882|ref|YP_004383310.1| - 0.013 15.2 0.1 0.051 13.3 0.1 2.0 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|330506882|ref|YP_004383310.1| - 0.043 14.1 0.0 0.06 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|330506882|ref|YP_004383310.1| - 0.05 13.4 0.1 0.093 12.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|330506882|ref|YP_004383310.1| - 0.062 13.2 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|330506882|ref|YP_004383310.1| - 0.063 13.8 0.0 0.12 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|330506882|ref|YP_004383310.1| - 0.079 13.2 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|330506882|ref|YP_004383310.1| - 0.18 10.4 0.0 0.69 8.5 0.1 1.7 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|330506883|ref|YP_004383311.1| - 1.5e-23 83.3 18.3 1.5e-23 83.3 18.3 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330506883|ref|YP_004383311.1| - 7.1e-08 31.9 26.2 7.1e-08 31.9 26.2 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|330506883|ref|YP_004383311.1| - 7.1 5.8 26.3 20 4.4 0.2 2.5 2 1 0 2 2 2 0 ABC-2 family transporter protein FecCD PF01032.18 gi|330506884|ref|YP_004383312.1| - 1.3e-09 37.5 0.5 1.4e-09 37.4 0.5 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|330506885|ref|YP_004383313.1| - 1.3e-28 100.1 0.0 1.8e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein RHH_1 PF01402.21 gi|330506887|ref|YP_004383315.1| - 4.5e-08 32.7 0.3 8.7e-08 31.8 0.3 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|330506887|ref|YP_004383315.1| - 5.5e-06 26.3 0.2 8.5e-06 25.6 0.2 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain DUF5305 PF17231.2 gi|330506887|ref|YP_004383315.1| - 0.099 12.0 0.1 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5305) ParE_toxin PF05016.15 gi|330506888|ref|YP_004383316.1| - 3.2e-09 37.3 0.0 3.8e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|330506888|ref|YP_004383316.1| - 0.12 12.3 0.0 0.18 11.8 0.0 1.3 1 1 0 1 1 1 0 ParE-like toxin of type II bacterial toxin-antitoxin system FeoA PF04023.14 gi|330506889|ref|YP_004383317.1| - 4.4e-18 65.3 1.2 4.9e-18 65.2 1.2 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|330506890|ref|YP_004383318.1| - 1.7e-49 167.3 0.0 2.6e-49 166.8 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|330506890|ref|YP_004383318.1| - 3e-26 91.9 20.6 6.5e-14 52.2 7.2 3.5 3 1 1 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|330506890|ref|YP_004383318.1| - 1.2e-17 64.1 0.0 2.1e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|330506890|ref|YP_004383318.1| - 1.3e-12 47.2 1.7 1.3e-12 47.2 1.7 2.6 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus SRPRB PF09439.10 gi|330506890|ref|YP_004383318.1| - 0.0022 17.5 0.0 0.0032 16.9 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|330506890|ref|YP_004383318.1| - 0.19 11.2 0.0 0.53 9.8 0.0 1.7 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain HEAT_2 PF13646.6 gi|330506891|ref|YP_004383319.1| - 1.8e-14 53.9 3.7 2.5e-11 43.8 0.7 2.9 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|330506891|ref|YP_004383319.1| - 7.1e-09 35.5 2.3 0.0009 19.7 0.2 4.6 3 1 0 3 3 3 2 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|330506891|ref|YP_004383319.1| - 0.00021 21.2 2.2 0.72 10.3 0.0 4.3 5 0 0 5 5 5 1 HEAT repeat NIR_SIR PF01077.22 gi|330506892|ref|YP_004383320.1| - 5.6e-19 68.2 0.1 8.1e-19 67.7 0.1 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain Fer4 PF00037.27 gi|330506892|ref|YP_004383320.1| - 4e-16 58.1 16.2 4.1e-08 32.7 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain NIR_SIR_ferr PF03460.17 gi|330506892|ref|YP_004383320.1| - 3.8e-14 52.3 0.1 6.3e-14 51.6 0.1 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_6 PF12837.7 gi|330506892|ref|YP_004383320.1| - 1e-12 47.5 18.9 1.1e-06 28.5 5.6 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330506892|ref|YP_004383320.1| - 2.5e-12 46.1 12.4 9.3e-06 25.4 3.3 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330506892|ref|YP_004383320.1| - 5.3e-12 45.7 24.5 1.1e-07 31.8 14.6 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330506892|ref|YP_004383320.1| - 3.3e-10 40.4 29.7 2.5e-08 34.4 14.5 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330506892|ref|YP_004383320.1| - 2.4e-08 34.0 12.5 5.7e-08 32.8 12.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330506892|ref|YP_004383320.1| - 2.7e-08 33.8 13.9 0.00021 21.3 1.2 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330506892|ref|YP_004383320.1| - 4.1e-07 30.0 18.1 0.00026 21.3 2.5 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330506892|ref|YP_004383320.1| - 7.4e-07 29.5 9.5 0.0035 17.8 0.7 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330506892|ref|YP_004383320.1| - 5e-06 27.0 11.5 0.00068 20.1 0.2 3.3 4 0 0 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|330506892|ref|YP_004383320.1| - 1.1e-05 26.2 12.0 0.024 15.6 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|330506892|ref|YP_004383320.1| - 2.5e-05 24.9 9.1 0.037 14.8 0.3 3.1 4 0 0 4 4 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|330506892|ref|YP_004383320.1| - 0.00011 22.8 21.4 0.012 16.5 6.6 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|330506892|ref|YP_004383320.1| - 0.00019 22.2 13.5 0.099 13.5 2.4 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330506892|ref|YP_004383320.1| - 0.044 14.3 19.1 0.051 14.1 1.9 2.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330506892|ref|YP_004383320.1| - 0.2 11.9 13.9 0.59 10.3 3.3 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain SCIFF PF13165.6 gi|330506892|ref|YP_004383320.1| - 3.8 7.5 10.1 0.98 9.4 0.3 2.4 1 1 1 2 2 2 0 Six-cysteine peptide SCIFF ABC_tran PF00005.27 gi|330506893|ref|YP_004383321.1| - 2.1e-27 96.3 0.0 2.9e-27 95.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330506893|ref|YP_004383321.1| - 6.3e-15 55.8 1.2 1.6e-09 38.1 0.2 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|330506893|ref|YP_004383321.1| - 0.002 17.9 0.0 1.3 8.6 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|330506893|ref|YP_004383321.1| - 0.0055 17.1 0.2 0.013 15.9 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|330506893|ref|YP_004383321.1| - 0.013 15.8 0.0 0.04 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|330506893|ref|YP_004383321.1| - 0.017 15.6 0.0 0.031 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|330506893|ref|YP_004383321.1| - 0.13 12.1 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|330506893|ref|YP_004383321.1| - 0.19 11.1 0.0 8.3 5.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 gi|330506893|ref|YP_004383321.1| - 0.22 10.9 0.4 19 4.6 0.1 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC2_membrane PF01061.24 gi|330506894|ref|YP_004383322.1| - 9.6e-27 93.8 15.2 9.6e-27 93.8 15.2 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330506894|ref|YP_004383322.1| - 8.2e-15 54.7 19.1 1e-14 54.4 19.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|330506894|ref|YP_004383322.1| - 5e-08 32.6 16.1 8.4e-08 31.8 16.1 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|330506894|ref|YP_004383322.1| - 0.00086 18.9 9.5 0.0011 18.5 9.5 1.2 1 0 0 1 1 1 1 CcmB protein CGGC PF08821.11 gi|330506895|ref|YP_004383323.1| - 1.8e-30 105.3 0.5 2e-30 105.1 0.5 1.0 1 0 0 1 1 1 1 CGGC domain Methyltransf_11 PF08241.12 gi|330506896|ref|YP_004383324.1| - 7.4e-16 58.6 0.0 1.3e-15 57.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330506896|ref|YP_004383324.1| - 2.9e-10 40.7 0.0 5.7e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330506896|ref|YP_004383324.1| - 2.6e-08 33.9 0.0 3.8e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330506896|ref|YP_004383324.1| - 5.8e-06 27.0 0.0 1.3e-05 25.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330506896|ref|YP_004383324.1| - 4.8e-05 23.2 0.0 0.00019 21.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330506896|ref|YP_004383324.1| - 6.8e-05 22.3 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|330506896|ref|YP_004383324.1| - 0.00094 18.8 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|330506896|ref|YP_004383324.1| - 0.064 12.2 0.0 0.083 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_25 PF13649.6 gi|330506897|ref|YP_004383325.1| - 2e-16 60.5 0.0 3.2e-15 56.6 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330506897|ref|YP_004383325.1| - 1.5e-15 57.3 0.0 6.4e-15 55.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330506897|ref|YP_004383325.1| - 2.2e-15 57.1 0.0 5.7e-15 55.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330506897|ref|YP_004383325.1| - 1.8e-10 40.5 0.0 4.7e-10 39.2 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family GCD14 PF08704.10 gi|330506897|ref|YP_004383325.1| - 5.1e-05 23.1 0.0 7e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|330506897|ref|YP_004383325.1| - 0.0008 19.2 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|330506897|ref|YP_004383325.1| - 0.0047 16.4 0.0 0.016 14.6 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_12 PF08242.12 gi|330506897|ref|YP_004383325.1| - 0.047 14.4 0.0 0.36 11.6 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain UPF0020 PF01170.18 gi|330506897|ref|YP_004383325.1| - 0.069 12.8 0.0 0.36 10.5 0.0 2.1 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 MetW PF07021.12 gi|330506897|ref|YP_004383325.1| - 0.079 12.5 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|330506897|ref|YP_004383325.1| - 0.091 11.3 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_24 PF13578.6 gi|330506897|ref|YP_004383325.1| - 0.099 13.7 0.0 0.43 11.6 0.0 2.1 2 1 0 2 2 2 0 Methyltransferase domain MTS PF05175.14 gi|330506897|ref|YP_004383325.1| - 0.14 11.7 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Zip PF02535.22 gi|330506898|ref|YP_004383326.1| - 9.3e-24 84.3 22.1 2.5e-20 73.0 5.5 2.4 1 1 1 2 2 2 2 ZIP Zinc transporter SLATT_1 PF18181.1 gi|330506898|ref|YP_004383326.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 DUF2202 PF09968.9 gi|330506899|ref|YP_004383327.1| - 1.5e-58 197.2 1.0 1.8e-58 197.0 1.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Cation_efflux PF01545.21 gi|330506900|ref|YP_004383328.1| - 5.8e-32 111.0 12.5 7.2e-32 110.7 12.5 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|330506900|ref|YP_004383328.1| - 5.1e-15 55.4 0.3 8.8e-15 54.6 0.3 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Nitro_FeMo-Co PF02579.17 gi|330506900|ref|YP_004383328.1| - 1.4e-11 44.5 0.0 2.3e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Trp_oprn_chp PF09534.10 gi|330506900|ref|YP_004383328.1| - 2.6 7.8 6.6 0.14 12.0 0.7 1.9 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Nitro_FeMo-Co PF02579.17 gi|330506901|ref|YP_004383329.1| - 1.1e-21 76.9 0.0 1.6e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Semialdhyde_dhC PF02774.18 gi|330506901|ref|YP_004383329.1| - 0.033 14.3 0.5 0.042 13.9 0.5 1.1 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, dimerisation domain PrpR_N PF06506.11 gi|330506901|ref|YP_004383329.1| - 0.067 12.8 0.3 0.26 10.8 0.2 1.8 1 1 1 2 2 2 0 Propionate catabolism activator NIF3 PF01784.18 gi|330506901|ref|YP_004383329.1| - 0.08 12.6 0.0 0.095 12.3 0.0 1.1 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) Nitro_FeMo-Co PF02579.17 gi|330506902|ref|YP_004383330.1| - 3e-22 78.7 0.0 3.7e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor CbiA PF01656.23 gi|330506903|ref|YP_004383331.1| - 3.1e-17 62.8 0.0 4.8e-17 62.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|330506903|ref|YP_004383331.1| - 1.1e-15 57.7 0.2 3e-06 26.9 0.0 3.1 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_6 PF12837.7 gi|330506903|ref|YP_004383331.1| - 9.6e-14 50.8 10.9 9.8e-07 28.6 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|330506903|ref|YP_004383331.1| - 3.6e-13 48.7 12.0 1.2e-06 28.1 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_31 PF13614.6 gi|330506903|ref|YP_004383331.1| - 4.3e-09 36.5 0.0 0.0024 17.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain Fer4_7 PF12838.7 gi|330506903|ref|YP_004383331.1| - 2.7e-07 31.1 9.7 0.0044 17.6 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330506903|ref|YP_004383331.1| - 3.7e-07 30.2 9.3 7.9e-07 29.1 9.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330506903|ref|YP_004383331.1| - 9.2e-07 28.6 11.8 0.00013 21.8 2.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330506903|ref|YP_004383331.1| - 1.3e-06 28.4 11.5 1.9e-05 24.6 11.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330506903|ref|YP_004383331.1| - 7e-06 26.9 8.7 0.0015 19.4 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|330506903|ref|YP_004383331.1| - 6.4e-05 23.0 14.2 0.00033 20.8 12.7 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain MipZ PF09140.11 gi|330506903|ref|YP_004383331.1| - 0.0019 17.6 0.0 0.047 13.0 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ Fer4_4 PF12800.7 gi|330506903|ref|YP_004383331.1| - 0.002 18.5 13.1 0.047 14.2 1.9 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330506903|ref|YP_004383331.1| - 0.0022 18.4 10.8 0.11 13.0 1.1 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_NifH PF00142.18 gi|330506903|ref|YP_004383331.1| - 0.0022 17.5 0.2 0.33 10.4 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_17 PF13534.6 gi|330506903|ref|YP_004383331.1| - 0.0033 17.9 11.6 0.27 11.8 3.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|330506903|ref|YP_004383331.1| - 0.012 14.9 1.6 0.031 13.5 0.6 2.1 2 1 1 3 3 3 0 Anion-transporting ATPase AAA_25 PF13481.6 gi|330506903|ref|YP_004383331.1| - 0.056 13.0 0.4 0.25 10.9 0.2 1.9 2 0 0 2 2 2 0 AAA domain Fer4_15 PF13459.6 gi|330506903|ref|YP_004383331.1| - 0.069 13.9 5.6 3.9 8.3 1.4 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|330506903|ref|YP_004383331.1| - 0.071 14.1 26.9 0.084 13.8 5.8 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain PhoH PF02562.16 gi|330506903|ref|YP_004383331.1| - 0.1 12.1 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein Fer4_22 PF17179.4 gi|330506903|ref|YP_004383331.1| - 0.2 12.5 9.7 3.1 8.7 1.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330506903|ref|YP_004383331.1| - 1 10.0 12.7 3.3 8.3 2.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CbiA PF01656.23 gi|330506904|ref|YP_004383332.1| - 2.1e-16 60.1 0.0 2.7e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.27 gi|330506904|ref|YP_004383332.1| - 1e-11 44.1 13.0 9.2e-07 28.4 2.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330506904|ref|YP_004383332.1| - 2.7e-09 37.5 3.1 0.0018 18.8 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330506904|ref|YP_004383332.1| - 4.7e-09 35.8 11.4 0.00012 21.9 1.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain ParA PF10609.9 gi|330506904|ref|YP_004383332.1| - 2.6e-08 33.6 0.2 0.0065 16.0 0.0 2.7 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_6 PF12837.7 gi|330506904|ref|YP_004383332.1| - 2.9e-08 33.4 11.8 0.00016 21.6 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330506904|ref|YP_004383332.1| - 5.3e-07 30.5 2.7 0.013 16.4 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|330506904|ref|YP_004383332.1| - 5.9e-07 29.5 13.0 2.3e-06 27.6 13.0 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|330506904|ref|YP_004383332.1| - 6.8e-06 26.1 0.2 0.02 14.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_9 PF13187.6 gi|330506904|ref|YP_004383332.1| - 2e-05 24.7 10.4 0.0013 18.9 11.6 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330506904|ref|YP_004383332.1| - 4.3e-05 23.6 12.6 0.013 15.6 1.1 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|330506904|ref|YP_004383332.1| - 0.00017 21.5 0.4 0.044 13.7 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase AAA_26 PF13500.6 gi|330506904|ref|YP_004383332.1| - 0.0025 17.7 0.8 0.35 10.6 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|330506904|ref|YP_004383332.1| - 0.0031 17.9 0.0 0.008 16.6 0.0 1.7 2 0 0 2 2 1 1 AAA ATPase domain Fer4_15 PF13459.6 gi|330506904|ref|YP_004383332.1| - 0.0031 18.2 6.5 0.29 11.9 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|330506904|ref|YP_004383332.1| - 0.0077 16.7 12.8 0.1 13.1 2.9 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330506904|ref|YP_004383332.1| - 0.0087 16.5 16.6 0.17 12.5 4.6 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain cobW PF02492.19 gi|330506904|ref|YP_004383332.1| - 0.011 15.4 0.5 2 8.0 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 gi|330506904|ref|YP_004383332.1| - 0.012 15.1 0.5 0.024 14.2 0.0 1.7 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Fer4_17 PF13534.6 gi|330506904|ref|YP_004383332.1| - 0.022 15.3 11.4 0.92 10.1 4.1 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330506904|ref|YP_004383332.1| - 0.023 15.6 15.8 0.68 11.0 5.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain ArsA_ATPase PF02374.15 gi|330506904|ref|YP_004383332.1| - 0.024 13.9 1.6 0.078 12.1 1.3 1.9 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_25 PF13481.6 gi|330506904|ref|YP_004383332.1| - 0.026 14.1 0.1 0.25 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|330506904|ref|YP_004383332.1| - 0.041 13.5 0.1 1.5 8.4 0.1 2.8 4 0 0 4 4 3 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|330506904|ref|YP_004383332.1| - 0.081 12.6 1.0 0.21 11.3 0.2 1.9 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|330506904|ref|YP_004383332.1| - 0.13 12.0 0.3 0.58 9.9 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain NB-ARC PF00931.22 gi|330506904|ref|YP_004383332.1| - 0.15 11.2 0.2 16 4.6 0.3 2.2 2 0 0 2 2 2 0 NB-ARC domain Fer4_13 PF13370.6 gi|330506904|ref|YP_004383332.1| - 0.28 11.8 12.6 2.5 8.7 4.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|330506904|ref|YP_004383332.1| - 3.4 8.6 12.5 4.6 8.2 1.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|330506906|ref|YP_004383334.1| - 5.4e-13 49.7 0.0 8.7e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF1272 PF06906.11 gi|330506906|ref|YP_004383334.1| - 0.021 14.9 0.0 0.042 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) Lactamase_B PF00753.27 gi|330506907|ref|YP_004383335.1| - 1.5e-13 51.2 2.3 4.6e-13 49.6 2.3 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|330506907|ref|YP_004383335.1| - 5.9e-08 32.5 0.1 1e-07 31.7 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|330506907|ref|YP_004383335.1| - 0.034 13.6 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|330506907|ref|YP_004383335.1| - 0.1 12.5 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF2202 PF09968.9 gi|330506908|ref|YP_004383336.1| - 3.8e-50 169.9 1.5 5e-50 169.5 1.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DOMON PF03351.17 gi|330506908|ref|YP_004383336.1| - 4.1e-25 88.4 0.0 6.4e-25 87.8 0.0 1.3 1 0 0 1 1 1 1 DOMON domain HTH_IclR PF09339.10 gi|330506909|ref|YP_004383337.1| - 0.00012 21.8 0.1 0.00029 20.6 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|330506909|ref|YP_004383337.1| - 0.00024 21.0 0.0 0.00056 19.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|330506909|ref|YP_004383337.1| - 0.0011 18.7 0.1 0.0041 16.8 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|330506909|ref|YP_004383337.1| - 0.0012 18.7 2.0 0.0014 18.5 0.0 2.1 3 0 0 3 3 3 1 HTH domain MarR_2 PF12802.7 gi|330506909|ref|YP_004383337.1| - 0.0022 17.8 0.0 0.0095 15.8 0.0 2.0 2 0 0 2 2 2 1 MarR family GntR PF00392.21 gi|330506909|ref|YP_004383337.1| - 0.004 16.8 0.1 0.0097 15.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|330506909|ref|YP_004383337.1| - 0.0055 16.2 0.2 0.021 14.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|330506909|ref|YP_004383337.1| - 0.012 15.4 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|330506909|ref|YP_004383337.1| - 0.087 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix DprA_WH PF17782.1 gi|330506909|ref|YP_004383337.1| - 0.11 12.7 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 DprA winged helix domain HTH_5 PF01022.20 gi|330506909|ref|YP_004383337.1| - 0.11 12.4 0.0 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HSP20 PF00011.21 gi|330506910|ref|YP_004383338.1| - 1.9e-14 53.7 0.4 2.5e-14 53.2 0.4 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|330506910|ref|YP_004383338.1| - 1.9e-12 46.6 0.1 3.5e-12 45.7 0.1 1.5 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|330506910|ref|YP_004383338.1| - 0.0065 17.5 0.0 0.05 14.6 0.0 2.1 2 0 0 2 2 2 1 CS domain PIH1_CS PF18201.1 gi|330506910|ref|YP_004383338.1| - 0.031 14.7 0.0 0.061 13.7 0.0 1.6 1 1 0 1 1 1 0 PIH1 CS-like domain MFS_1 PF07690.16 gi|330506911|ref|YP_004383339.1| - 9.3e-39 133.3 48.5 6.3e-20 71.4 13.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330506911|ref|YP_004383339.1| - 3.5e-10 39.3 18.0 4.8e-07 29.0 0.4 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|330506911|ref|YP_004383339.1| - 3.1e-08 32.9 16.4 2.7e-06 26.5 16.4 2.4 1 1 0 1 1 1 1 MFS_1 like family MFS_3 PF05977.13 gi|330506911|ref|YP_004383339.1| - 0.1 11.0 17.1 1.3 7.3 12.8 2.6 2 1 0 2 2 2 0 Transmembrane secretion effector HicA_toxin PF07927.12 gi|330506912|ref|YP_004383340.1| - 8.6e-06 25.7 0.3 9.8e-06 25.5 0.3 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|330506913|ref|YP_004383341.1| - 0.0017 18.5 0.0 0.0021 18.1 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|330506915|ref|YP_004383343.1| - 0.0029 17.6 0.1 0.004 17.2 0.1 1.2 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, UvrD-helicase PF00580.21 gi|330506916|ref|YP_004383344.1| - 1.1e-22 81.0 0.0 1.7e-12 47.5 0.0 3.4 2 1 0 3 3 3 3 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|330506916|ref|YP_004383344.1| - 1.5e-16 61.0 0.0 6.3e-16 59.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain UvrD_C PF13361.6 gi|330506916|ref|YP_004383344.1| - 5.2e-14 52.4 0.0 1.6e-12 47.4 0.0 2.1 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|330506916|ref|YP_004383344.1| - 7.5e-11 42.2 0.0 0.00021 21.1 0.0 3.3 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase UvrD_C_2 PF13538.6 gi|330506916|ref|YP_004383344.1| - 1.1e-07 31.6 0.1 8.4e-07 28.7 0.1 2.2 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|330506916|ref|YP_004383344.1| - 0.00098 18.9 0.0 0.3 10.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_12 PF13087.6 gi|330506916|ref|YP_004383344.1| - 0.11 12.1 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|330506916|ref|YP_004383344.1| - 0.15 12.4 0.1 3.4 7.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_15 PF13175.6 gi|330506917|ref|YP_004383345.1| - 1.5e-32 113.8 0.4 2.5e-30 106.5 0.4 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|330506917|ref|YP_004383345.1| - 7.3e-20 72.0 14.0 4.6e-11 43.1 9.4 3.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 gi|330506917|ref|YP_004383345.1| - 3.6e-16 59.4 1.8 1.1e-09 38.0 0.2 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|330506917|ref|YP_004383345.1| - 9.3e-12 45.9 0.2 2.1e-11 44.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|330506917|ref|YP_004383345.1| - 1.2e-09 37.9 0.3 9.6e-09 35.0 0.0 2.2 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|330506917|ref|YP_004383345.1| - 0.0021 17.8 0.0 0.0041 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|330506917|ref|YP_004383345.1| - 0.022 14.7 0.0 0.049 13.5 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase Methylase_S PF01420.19 gi|330506918|ref|YP_004383346.1| - 2.4e-26 92.9 0.0 6.3e-14 52.5 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.16 gi|330506919|ref|YP_004383347.1| - 6.6e-95 318.0 0.0 8.4e-95 317.6 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|330506919|ref|YP_004383347.1| - 3.6e-26 92.4 0.0 8.9e-26 91.1 0.0 1.7 1 0 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|330506919|ref|YP_004383347.1| - 0.00088 19.0 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|330506919|ref|YP_004383347.1| - 0.08 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain AviRa PF11599.8 gi|330506919|ref|YP_004383347.1| - 0.19 11.2 0.0 0.45 9.9 0.0 1.6 2 0 0 2 2 2 0 RRNA methyltransferase AviRa Radical_SAM PF04055.21 gi|330506920|ref|YP_004383348.1| - 8.1e-18 65.4 0.0 3.3e-17 63.4 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|330506920|ref|YP_004383348.1| - 3.1e-14 53.1 0.2 6e-14 52.1 0.2 1.5 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.21 gi|330506921|ref|YP_004383349.1| - 1.3e-14 54.9 0.4 4.2e-14 53.3 0.3 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|330506921|ref|YP_004383349.1| - 0.016 15.3 0.0 0.046 13.7 0.0 1.8 2 0 0 2 2 2 0 B12 binding domain DUF2240 PF09999.9 gi|330506923|ref|YP_004383351.1| - 1.2e-41 141.7 0.4 1.4e-41 141.5 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) NPCBM_assoc PF10633.9 gi|330506924|ref|YP_004383352.1| - 0.00028 21.1 0.2 2.2 8.6 0.0 3.7 2 1 1 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF916 PF06030.12 gi|330506924|ref|YP_004383352.1| - 0.04 14.0 0.0 39 4.3 0.0 3.4 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF916) Peptidase_C25 PF01364.18 gi|330506925|ref|YP_004383353.1| - 2.9e-27 95.9 0.2 4.4e-27 95.3 0.2 1.2 1 0 0 1 1 1 1 Peptidase family C25 DUF11 PF01345.18 gi|330506925|ref|YP_004383353.1| - 7.8e-06 26.1 0.1 3.7e-05 23.9 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF11 GHL10 PF02638.15 gi|330506925|ref|YP_004383353.1| - 0.00012 21.2 0.0 0.00022 20.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase-like 10 NPCBM_assoc PF10633.9 gi|330506925|ref|YP_004383353.1| - 0.0079 16.4 0.0 4.6 7.6 0.0 3.3 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase SH3_16 PF18348.1 gi|330506925|ref|YP_004383353.1| - 0.018 14.8 0.2 0.055 13.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial dipeptidyl-peptidase Sh3 domain HGD-D PF06050.13 gi|330506925|ref|YP_004383353.1| - 0.021 14.6 0.1 0.036 13.8 0.1 1.2 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Glycos_transf_2 PF00535.26 gi|330506926|ref|YP_004383354.1| - 3e-16 59.7 0.0 4.3e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330506926|ref|YP_004383354.1| - 2.3e-06 27.7 0.0 3.3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|330506926|ref|YP_004383354.1| - 0.00033 21.1 0.0 0.00072 20.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 DUF4191 PF13829.6 gi|330506926|ref|YP_004383354.1| - 0.016 14.6 2.1 0.031 13.6 2.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Tetraspanin PF00335.20 gi|330506926|ref|YP_004383354.1| - 0.045 13.5 0.8 0.062 13.0 0.8 1.1 1 0 0 1 1 1 0 Tetraspanin family NTP_transf_3 PF12804.7 gi|330506926|ref|YP_004383354.1| - 0.071 13.5 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 MobA-like NTP transferase domain DUF1538 PF07556.11 gi|330506926|ref|YP_004383354.1| - 0.39 10.0 8.1 2.9 7.1 1.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1538) PGM_PMM_I PF02878.16 gi|330506927|ref|YP_004383355.1| - 6.9e-28 97.1 0.0 1.4e-27 96.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|330506927|ref|YP_004383355.1| - 2e-18 66.9 0.0 3.9e-18 66.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|330506927|ref|YP_004383355.1| - 2.4e-17 63.2 0.0 3.8e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|330506927|ref|YP_004383355.1| - 8.4e-09 35.5 0.0 2.1e-08 34.2 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Alba PF01918.21 gi|330506928|ref|YP_004383356.1| - 1.5e-18 66.3 0.2 2e-18 66.0 0.2 1.2 1 0 0 1 1 1 1 Alba FtsJ PF01728.19 gi|330506929|ref|YP_004383357.1| - 8.2e-58 195.4 0.0 1e-57 195.1 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|330506929|ref|YP_004383357.1| - 1.5e-05 24.8 0.3 2.7e-05 24.1 0.3 1.4 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.6 gi|330506929|ref|YP_004383357.1| - 0.00032 20.5 0.5 0.89 9.3 0.0 2.7 2 1 1 3 3 3 3 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330506929|ref|YP_004383357.1| - 0.0012 18.8 0.0 0.012 15.4 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330506929|ref|YP_004383357.1| - 0.0012 19.5 1.7 1.6 9.5 0.1 2.8 2 1 0 2 2 2 2 Methyltransferase domain DDE_Tnp_1 PF01609.21 gi|330506931|ref|YP_004383359.1| - 3.9e-09 36.5 1.8 8.4e-09 35.4 1.8 1.5 1 1 0 1 1 1 1 Transposase DDE domain MADF_DNA_bdg PF10545.9 gi|330506931|ref|YP_004383359.1| - 0.11 12.8 0.4 1 9.7 0.4 2.6 2 0 0 2 2 2 0 Alcohol dehydrogenase transcription factor Myb/SANT-like Transglut_core PF01841.19 gi|330506934|ref|YP_004383362.1| - 2.2e-06 28.1 0.0 1.8e-05 25.2 0.0 2.2 1 1 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core PF01841.19 gi|330506935|ref|YP_004383363.1| - 2e-07 31.5 0.0 3.9e-06 27.3 0.0 2.2 1 1 1 2 2 2 1 Transglutaminase-like superfamily Inhibitor_I42 PF09394.10 gi|330506936|ref|YP_004383364.1| - 1.3e-16 60.8 0.6 3.8e-16 59.3 0.0 1.9 2 0 0 2 2 2 1 Chagasin family peptidase inhibitor I42 Transposase_20 PF02371.16 gi|330506937|ref|YP_004383365.1| - 7.7e-26 90.2 0.1 1.4e-25 89.4 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330506937|ref|YP_004383365.1| - 3.8e-21 75.6 0.0 7e-21 74.7 0.0 1.5 1 0 0 1 1 1 1 Transposase Init_tRNA_PT PF04179.12 gi|330506937|ref|YP_004383365.1| - 0.047 14.0 1.2 0.093 13.0 0.1 2.0 2 0 0 2 2 2 0 Rit1 DUSP-like domain HR1 PF02185.16 gi|330506939|ref|YP_004383367.1| - 0.028 14.5 0.2 0.45 10.7 0.0 2.1 2 0 0 2 2 2 0 Hr1 repeat Peripla_BP_2 PF01497.18 gi|330506940|ref|YP_004383368.1| - 3.9e-22 79.0 0.0 5.1e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|330506940|ref|YP_004383368.1| - 0.5 10.6 4.5 0.93 9.7 4.5 1.5 1 0 0 1 1 1 0 Dockerin type I domain Peripla_BP_2 PF01497.18 gi|330506941|ref|YP_004383369.1| - 4.7e-31 108.2 0.0 6.8e-31 107.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|330506942|ref|YP_004383370.1| - 1.1e-31 110.2 0.1 1.4e-31 109.9 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Oxidored_nitro PF00148.19 gi|330506942|ref|YP_004383370.1| - 0.17 10.6 0.1 0.39 9.4 0.0 1.6 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase Peripla_BP_2 PF01497.18 gi|330506943|ref|YP_004383371.1| - 2.2e-07 30.7 0.0 2.9e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein EGF_Tenascin PF18720.1 gi|330506943|ref|YP_004383371.1| - 1 9.5 4.8 0.7 10.0 0.5 2.4 2 0 0 2 2 2 0 Tenascin EGF domain FecCD PF01032.18 gi|330506944|ref|YP_004383372.1| - 1.8e-91 306.4 38.1 2.3e-91 306.1 38.1 1.1 1 0 0 1 1 1 1 FecCD transport family LTD PF00932.19 gi|330506945|ref|YP_004383373.1| - 1.5e-19 70.4 0.2 2e-19 70.0 0.2 1.2 1 0 0 1 1 1 1 Lamin Tail Domain CbiK PF06180.11 gi|330506946|ref|YP_004383374.1| - 1.9e-73 247.0 0.0 3.6e-73 246.1 0.0 1.4 1 1 0 1 1 1 1 Cobalt chelatase (CbiK) CbiX PF01903.17 gi|330506946|ref|YP_004383374.1| - 4.7e-07 30.1 0.1 9e-05 22.8 0.0 2.8 2 1 0 2 2 2 2 CbiX DUF5320 PF17253.2 gi|330506947|ref|YP_004383375.1| - 7.9e-18 65.4 0.6 9.4e-18 65.1 0.6 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5320) ZapA PF05164.13 gi|330506947|ref|YP_004383375.1| - 0.021 15.2 0.2 0.026 15.0 0.2 1.1 1 0 0 1 1 1 0 Cell division protein ZapA Trimer_CC PF08954.11 gi|330506947|ref|YP_004383375.1| - 0.089 12.4 1.7 0.13 11.9 1.7 1.2 1 0 0 1 1 1 0 Trimerisation motif DUF134 PF02001.16 gi|330506948|ref|YP_004383376.1| - 3.9e-19 69.0 0.1 5.8e-19 68.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|330506948|ref|YP_004383376.1| - 3.9e-05 23.2 0.1 0.00011 21.8 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|330506948|ref|YP_004383376.1| - 0.063 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain ParA PF10609.9 gi|330506950|ref|YP_004383378.1| - 2.5e-97 325.2 0.0 3e-97 324.9 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|330506950|ref|YP_004383378.1| - 5.7e-14 52.3 0.0 1.7e-13 50.7 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|330506950|ref|YP_004383378.1| - 1.5e-09 38.0 0.4 3.7e-08 33.5 0.3 2.2 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|330506950|ref|YP_004383378.1| - 3.1e-06 26.7 0.1 7.6e-06 25.4 0.1 1.7 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|330506950|ref|YP_004383378.1| - 4.6e-06 26.3 0.1 0.00076 19.0 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|330506950|ref|YP_004383378.1| - 0.00027 20.2 1.3 0.0018 17.5 0.9 2.4 3 0 0 3 3 3 1 Anion-transporting ATPase APS_kinase PF01583.20 gi|330506950|ref|YP_004383378.1| - 0.0008 19.3 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase CBP_BcsQ PF06564.12 gi|330506950|ref|YP_004383378.1| - 0.0017 17.9 0.2 0.037 13.5 0.2 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MeaB PF03308.16 gi|330506950|ref|YP_004383378.1| - 0.0068 15.4 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 gi|330506950|ref|YP_004383378.1| - 0.012 15.5 0.1 0.021 14.7 0.1 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 gi|330506950|ref|YP_004383378.1| - 0.014 14.7 0.0 0.033 13.5 0.0 1.5 2 0 0 2 2 2 0 VirC1 protein AAA_25 PF13481.6 gi|330506950|ref|YP_004383378.1| - 0.017 14.7 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_26 PF13500.6 gi|330506950|ref|YP_004383378.1| - 0.021 14.7 0.4 2.8 7.7 0.3 2.3 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|330506950|ref|YP_004383378.1| - 0.03 14.0 0.1 0.055 13.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain Desulfoferrod_N PF06397.12 gi|330506950|ref|YP_004383378.1| - 0.045 13.4 0.4 0.096 12.3 0.4 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain FTHFS PF01268.19 gi|330506950|ref|YP_004383378.1| - 0.085 11.0 0.0 0.12 10.6 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase PG_binding_2 PF08823.11 gi|330506950|ref|YP_004383378.1| - 0.095 13.0 0.1 18 5.7 0.0 2.7 2 1 1 3 3 2 0 Putative peptidoglycan binding domain NTPase_1 PF03266.15 gi|330506950|ref|YP_004383378.1| - 0.11 12.4 0.5 0.23 11.4 0.2 1.7 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 gi|330506950|ref|YP_004383378.1| - 0.16 12.5 0.1 0.34 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain Y1_Tnp PF01797.16 gi|330506951|ref|YP_004383379.1| - 9.8e-25 87.0 0.0 1.1e-24 86.9 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like Radical_SAM PF04055.21 gi|330506954|ref|YP_004383382.1| - 2.2e-29 103.0 0.1 9.1e-29 101.0 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|330506954|ref|YP_004383382.1| - 7e-05 22.9 0.1 0.015 15.4 0.1 3.3 2 1 0 2 2 2 1 B12 binding domain AP_endonuc_2 PF01261.24 gi|330506954|ref|YP_004383382.1| - 0.0026 17.2 0.0 0.038 13.4 0.0 2.2 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel MCR_alpha_N PF02745.15 gi|330506955|ref|YP_004383383.1| - 9.7e-145 480.9 0.2 1.3e-144 480.6 0.2 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|330506955|ref|YP_004383383.1| - 1.8e-68 228.8 2.7 3.8e-68 227.8 2.7 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain BofC_C PF08955.10 gi|330506955|ref|YP_004383383.1| - 0.15 12.2 0.0 0.68 10.0 0.0 1.9 2 0 0 2 2 2 0 BofC C-terminal domain MCR_gamma PF02240.16 gi|330506956|ref|YP_004383384.1| - 8e-110 365.9 0.0 9e-110 365.7 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit LdpA_C PF12617.8 gi|330506956|ref|YP_004383384.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Iron-Sulfur binding protein C terminal MCR_D PF02505.14 gi|330506957|ref|YP_004383385.1| - 1.7e-53 180.3 0.0 1.9e-53 180.1 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.18 gi|330506958|ref|YP_004383386.1| - 1.6e-135 450.5 9.2 2.2e-135 450.0 9.2 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|330506958|ref|YP_004383386.1| - 4.2e-76 254.6 5.0 1.4e-75 253.0 1.4 2.3 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF1810 PF08837.11 gi|330506958|ref|YP_004383386.1| - 0.2 11.4 0.0 0.52 10.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1810) Topoisom_bac PF01131.20 gi|330506959|ref|YP_004383387.1| - 2.5e-119 399.0 0.0 3.1e-119 398.7 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|330506959|ref|YP_004383387.1| - 1.4e-15 57.4 0.1 1.2e-14 54.4 0.0 2.4 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|330506959|ref|YP_004383387.1| - 1.7e-15 56.5 0.9 1.7e-15 56.5 0.9 2.0 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.6 gi|330506959|ref|YP_004383387.1| - 9e-09 35.8 2.3 3e-08 34.1 2.3 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|330506959|ref|YP_004383387.1| - 0.00067 19.9 0.2 0.0017 18.6 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) HHH PF00633.23 gi|330506959|ref|YP_004383387.1| - 0.0037 17.0 0.1 0.0097 15.7 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|330506959|ref|YP_004383387.1| - 0.014 15.6 0.0 0.035 14.3 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus IMS_HHH PF11798.8 gi|330506959|ref|YP_004383387.1| - 0.025 14.9 0.0 0.083 13.3 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif OAM_dimer PF16554.5 gi|330506959|ref|YP_004383387.1| - 0.11 13.0 0.0 31 5.1 0.1 2.5 2 0 0 2 2 2 0 Dimerisation domain of d-ornithine 4,5-aminomutase PikAIV_N PF18605.1 gi|330506959|ref|YP_004383387.1| - 0.21 11.2 0.4 32 4.2 0.1 2.7 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain eRF1_1 PF03463.15 gi|330506960|ref|YP_004383388.1| - 1e-26 93.4 0.0 1.5e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|330506960|ref|YP_004383388.1| - 9.5e-22 77.6 0.2 3.8e-21 75.7 0.2 2.0 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|330506960|ref|YP_004383388.1| - 2.2e-07 31.3 0.0 8e-07 29.4 0.0 1.9 1 1 0 1 1 1 1 eRF1 domain 2 ATP_bind_3 PF01171.20 gi|330506961|ref|YP_004383389.1| - 0.0027 17.5 0.0 0.0055 16.5 0.0 1.6 1 1 0 1 1 1 1 PP-loop family NAD_binding_9 PF13454.6 gi|330506961|ref|YP_004383389.1| - 0.072 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 FAD-NAD(P)-binding AsnC_trans_reg PF01037.21 gi|330506962|ref|YP_004383390.1| - 2.1e-14 53.3 0.2 4.4e-14 52.2 0.0 1.6 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|330506962|ref|YP_004383390.1| - 1.4e-08 34.2 0.2 3e-08 33.1 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|330506962|ref|YP_004383390.1| - 1.9e-07 30.9 0.0 5.1e-07 29.6 0.0 1.7 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|330506962|ref|YP_004383390.1| - 1.4e-06 28.1 0.1 1e-05 25.3 0.0 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|330506962|ref|YP_004383390.1| - 9.6e-06 25.6 0.0 1.9e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|330506962|ref|YP_004383390.1| - 0.00015 21.7 0.0 0.00031 20.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|330506962|ref|YP_004383390.1| - 0.00024 20.8 1.2 0.0051 16.5 0.1 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|330506962|ref|YP_004383390.1| - 0.00073 19.4 0.0 0.0021 17.9 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|330506962|ref|YP_004383390.1| - 0.0022 17.9 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|330506962|ref|YP_004383390.1| - 0.02 14.9 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r3 PF04539.16 gi|330506962|ref|YP_004383390.1| - 0.022 14.9 2.2 0.16 12.1 0.8 2.2 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_11 PF08279.12 gi|330506962|ref|YP_004383390.1| - 0.03 14.3 0.1 0.065 13.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain DUF4423 PF14394.6 gi|330506962|ref|YP_004383390.1| - 0.031 14.0 0.2 0.055 13.2 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_DeoR PF08220.12 gi|330506962|ref|YP_004383390.1| - 0.05 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|330506962|ref|YP_004383390.1| - 0.054 13.3 0.0 0.27 11.1 0.0 2.2 3 0 0 3 3 3 0 Homeodomain-like domain TrmB PF01978.19 gi|330506962|ref|YP_004383390.1| - 0.068 13.1 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1670 PF07900.11 gi|330506962|ref|YP_004383390.1| - 0.08 12.3 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) HTH_34 PF13601.6 gi|330506962|ref|YP_004383390.1| - 0.099 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|330506962|ref|YP_004383390.1| - 0.14 12.2 0.1 0.23 11.6 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_29 PF13551.6 gi|330506962|ref|YP_004383390.1| - 0.15 12.1 0.0 0.65 10.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix Dimerisation PF08100.11 gi|330506962|ref|YP_004383390.1| - 0.15 12.1 0.1 0.31 11.1 0.1 1.5 1 0 0 1 1 1 0 Dimerisation domain Aminotran_1_2 PF00155.21 gi|330506963|ref|YP_004383391.1| - 3.3e-65 220.6 0.0 3.8e-65 220.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|330506963|ref|YP_004383391.1| - 0.0051 16.2 0.0 0.0095 15.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Forkhead_N PF08430.12 gi|330506963|ref|YP_004383391.1| - 0.044 14.4 0.3 0.07 13.7 0.3 1.2 1 0 0 1 1 1 0 Forkhead N-terminal region Cys_Met_Meta_PP PF01053.20 gi|330506963|ref|YP_004383391.1| - 0.055 12.0 0.0 0.11 11.0 0.0 1.4 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme CDP-OH_P_transf PF01066.21 gi|330506964|ref|YP_004383392.1| - 5.9e-10 39.8 1.5 5.9e-10 39.8 1.5 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PIN PF01850.21 gi|330506965|ref|YP_004383393.1| - 1.2e-15 58.1 0.2 1.4e-15 57.9 0.2 1.0 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|330506965|ref|YP_004383393.1| - 0.0012 18.6 0.1 0.003 17.3 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_3 PF13470.6 gi|330506965|ref|YP_004383393.1| - 0.05 14.4 0.1 0.078 13.7 0.1 1.4 1 1 0 1 1 1 0 PIN domain YbhQ PF11076.8 gi|330506965|ref|YP_004383393.1| - 0.083 12.9 0.2 0.096 12.7 0.2 1.1 1 0 0 1 1 1 0 Putative inner membrane protein YbhQ DUF2281 PF10047.9 gi|330506966|ref|YP_004383394.1| - 9.2e-21 74.3 0.3 1e-20 74.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2281) DUF2274 PF10038.9 gi|330506966|ref|YP_004383394.1| - 0.042 14.3 0.0 0.22 12.0 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2274) FAM193_C PF15914.5 gi|330506966|ref|YP_004383394.1| - 0.1 12.3 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 FAM193 family C-terminal POR PF01558.18 gi|330506967|ref|YP_004383395.1| - 6.3e-37 127.3 0.0 9.9e-37 126.7 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|330506967|ref|YP_004383395.1| - 6.5e-23 81.2 0.0 1.1e-22 80.5 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|330506968|ref|YP_004383396.1| - 3.8e-51 174.0 0.0 5e-51 173.7 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|330506968|ref|YP_004383396.1| - 1.1e-24 86.7 0.0 2.9e-24 85.3 0.0 1.7 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|330506968|ref|YP_004383396.1| - 8e-07 29.0 0.0 1.4e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|330506968|ref|YP_004383396.1| - 0.00086 19.0 0.2 0.0016 18.1 0.2 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMP-binding PF00501.28 gi|330506969|ref|YP_004383397.1| - 1.2e-74 251.4 0.0 1.6e-74 251.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330506969|ref|YP_004383397.1| - 6.1e-25 88.0 0.5 1.2e-24 87.0 0.5 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.7 gi|330506969|ref|YP_004383397.1| - 7.8e-08 32.8 9.2 2e-07 31.5 9.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330506969|ref|YP_004383397.1| - 2.9e-06 27.3 8.8 1.8e-05 24.8 9.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330506969|ref|YP_004383397.1| - 3.3e-06 26.7 15.5 0.00013 21.7 3.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330506969|ref|YP_004383397.1| - 5.3e-06 26.5 10.2 4.1e-05 23.6 10.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330506969|ref|YP_004383397.1| - 2.4e-05 24.1 13.9 0.0081 16.2 4.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330506969|ref|YP_004383397.1| - 3.3e-05 23.9 9.8 0.0006 19.9 10.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330506969|ref|YP_004383397.1| - 0.00014 22.2 4.5 0.16 12.4 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330506969|ref|YP_004383397.1| - 0.00025 21.3 10.3 0.02 15.3 1.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330506969|ref|YP_004383397.1| - 0.00054 20.5 6.9 0.11 13.0 0.1 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330506969|ref|YP_004383397.1| - 0.00084 19.8 8.5 0.062 13.9 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|330506969|ref|YP_004383397.1| - 0.0026 18.7 12.4 0.006 17.5 1.7 2.6 1 1 2 3 3 3 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|330506969|ref|YP_004383397.1| - 0.012 15.7 3.2 0.012 15.7 3.2 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|330506969|ref|YP_004383397.1| - 0.017 16.0 5.1 2.8 8.8 0.1 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330506969|ref|YP_004383397.1| - 0.42 11.6 17.9 4.3 8.5 4.0 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330506969|ref|YP_004383397.1| - 2.3 8.4 9.3 1.5e+02 2.6 9.7 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Cupin_2 PF07883.11 gi|330506970|ref|YP_004383398.1| - 8.1e-16 57.5 0.1 2.2e-15 56.1 0.1 1.8 1 1 0 1 1 1 1 Cupin domain HTH_31 PF13560.6 gi|330506970|ref|YP_004383398.1| - 4.3e-07 30.2 0.0 6.4e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|330506970|ref|YP_004383398.1| - 4e-06 26.8 0.0 7.1e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|330506970|ref|YP_004383398.1| - 0.00097 19.2 0.0 0.0017 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix AraC_binding PF02311.19 gi|330506970|ref|YP_004383398.1| - 0.0026 17.7 0.0 0.0045 16.9 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|330506970|ref|YP_004383398.1| - 0.0032 17.4 0.0 0.0044 16.9 0.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|330506970|ref|YP_004383398.1| - 0.0065 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.12 gi|330506970|ref|YP_004383398.1| - 0.06 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ zinc_ribbon_4 PF13717.6 gi|330506971|ref|YP_004383399.1| - 0.097 12.6 0.2 0.22 11.5 0.0 1.6 2 0 0 2 2 2 0 zinc-ribbon domain AAA_15 PF13175.6 gi|330506977|ref|YP_004383405.1| - 3.4e-28 99.4 0.0 3.7e-25 89.4 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|330506977|ref|YP_004383405.1| - 1.2e-22 81.2 0.1 2.1e-22 80.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330506977|ref|YP_004383405.1| - 6.1e-06 25.8 0.2 3.7e-05 23.3 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF3696 PF12476.8 gi|330506977|ref|YP_004383405.1| - 7.9e-05 23.0 0.0 0.00016 22.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3696) DUF2813 PF11398.8 gi|330506977|ref|YP_004383405.1| - 0.00052 19.4 0.0 0.0025 17.1 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|330506977|ref|YP_004383405.1| - 0.00069 20.2 0.0 0.0016 19.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|330506977|ref|YP_004383405.1| - 0.055 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2099 PF09872.9 gi|330506979|ref|YP_004383407.1| - 1.6e-95 319.2 0.3 1.8e-95 319.0 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) FrhB_FdhB_N PF04422.13 gi|330506979|ref|YP_004383407.1| - 0.0046 17.1 0.2 0.011 15.9 0.2 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Histidinol_dh PF00815.20 gi|330506980|ref|YP_004383408.1| - 1.5e-165 551.1 0.1 1.9e-165 550.8 0.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DNA_ligase_A_M PF01068.21 gi|330506981|ref|YP_004383409.1| - 1.4e-56 191.4 0.0 2.1e-56 190.8 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|330506981|ref|YP_004383409.1| - 2.3e-34 119.2 0.0 4.2e-33 115.1 0.0 2.5 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|330506981|ref|YP_004383409.1| - 6.3e-16 58.8 0.0 1.6e-15 57.4 0.0 1.8 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|330506981|ref|YP_004383409.1| - 2.2e-08 34.6 0.0 3.8e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 RNA ligase mRNA_cap_enzyme PF01331.19 gi|330506981|ref|YP_004383409.1| - 0.0065 16.3 0.0 7 6.4 0.0 3.1 2 1 1 3 3 3 2 mRNA capping enzyme, catalytic domain Homoserine_dh PF00742.19 gi|330506982|ref|YP_004383410.1| - 4.2e-53 179.8 0.1 6.5e-53 179.2 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|330506982|ref|YP_004383410.1| - 3.1e-11 44.0 0.1 5.1e-11 43.3 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 gi|330506982|ref|YP_004383410.1| - 0.007 17.1 0.4 0.024 15.3 0.2 2.0 1 1 1 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACT PF01842.25 gi|330506983|ref|YP_004383411.1| - 0.0017 18.1 0.1 0.0055 16.4 0.0 1.9 1 1 1 2 2 2 1 ACT domain Saccharop_dh_N PF04455.12 gi|330506983|ref|YP_004383411.1| - 0.022 15.1 0.0 0.048 14.1 0.0 1.6 1 0 0 1 1 1 0 LOR/SDH bifunctional enzyme conserved region DUF2007 PF09413.10 gi|330506983|ref|YP_004383411.1| - 0.1 12.8 0.1 0.55 10.4 0.0 2.1 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein Methyltransf_25 PF13649.6 gi|330506984|ref|YP_004383412.1| - 1e-17 64.6 0.0 1.9e-17 63.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330506984|ref|YP_004383412.1| - 1e-12 48.1 0.0 1.4e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330506984|ref|YP_004383412.1| - 4.9e-11 43.1 0.0 8.7e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330506984|ref|YP_004383412.1| - 3.3e-09 36.8 0.0 5.5e-09 36.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330506984|ref|YP_004383412.1| - 4.4e-09 37.0 0.0 7.4e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330506984|ref|YP_004383412.1| - 5.1e-07 29.4 0.0 7.3e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|330506984|ref|YP_004383412.1| - 1.9e-05 24.1 0.0 2.3e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|330506984|ref|YP_004383412.1| - 5.9e-05 22.8 0.0 9.5e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.11 gi|330506984|ref|YP_004383412.1| - 7.9e-05 22.4 0.0 0.00019 21.2 0.0 1.6 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.6 gi|330506984|ref|YP_004383412.1| - 0.00036 20.5 0.0 0.00057 19.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|330506984|ref|YP_004383412.1| - 0.0034 16.8 0.0 0.0064 15.9 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|330506984|ref|YP_004383412.1| - 0.012 15.1 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 gi|330506984|ref|YP_004383412.1| - 0.077 11.9 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DapB_C PF05173.14 gi|330506986|ref|YP_004383414.1| - 9.9e-45 151.5 0.0 1.4e-44 151.0 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|330506986|ref|YP_004383414.1| - 2e-25 89.3 1.3 3.1e-25 88.7 1.3 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus RmlD_sub_bind PF04321.17 gi|330506986|ref|YP_004383414.1| - 0.044 12.9 0.1 0.072 12.2 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Gp_dh_N PF00044.24 gi|330506986|ref|YP_004383414.1| - 0.29 11.5 1.7 5 7.5 1.7 2.4 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DHDPS PF00701.22 gi|330506987|ref|YP_004383415.1| - 3.8e-95 317.9 0.0 4.3e-95 317.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Ribosomal_S17e PF00833.18 gi|330506988|ref|YP_004383416.1| - 9.1e-10 38.5 0.1 9.6e-10 38.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 SWIRM PF04433.17 gi|330506988|ref|YP_004383416.1| - 0.086 13.2 0.1 0.09 13.1 0.1 1.2 1 0 0 1 1 1 0 SWIRM domain Phos_pyr_kin PF08543.12 gi|330506989|ref|YP_004383417.1| - 3.9e-84 281.9 0.1 4.8e-84 281.6 0.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|330506989|ref|YP_004383417.1| - 9.2e-32 109.9 0.0 1.5e-31 109.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|330506989|ref|YP_004383417.1| - 4.5e-06 26.2 0.2 6.6e-06 25.6 0.2 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|330506989|ref|YP_004383417.1| - 0.075 12.5 0.6 0.13 11.7 0.6 1.5 1 1 0 1 1 1 0 Carbohydrate kinase Clathrin_H_link PF13838.6 gi|330506990|ref|YP_004383418.1| - 1e-07 31.8 12.9 0.39 10.6 0.1 5.0 4 1 1 5 5 5 4 Clathrin-H-link LPD22 PF18834.1 gi|330506990|ref|YP_004383418.1| - 0.004 17.3 3.7 0.45 10.8 0.2 3.7 1 1 0 3 3 3 1 Large polyvalent protein associated domain 22 Sigma70_r4 PF04545.16 gi|330506990|ref|YP_004383418.1| - 0.0077 15.7 0.0 3 7.5 0.0 3.4 4 0 0 4 4 4 1 Sigma-70, region 4 PHF12_MRG_bd PF16737.5 gi|330506990|ref|YP_004383418.1| - 0.019 14.7 0.0 91 2.9 0.0 4.2 4 0 0 4 4 4 0 PHD finger protein 12 MRG binding domain TFIIB PF00382.19 gi|330506990|ref|YP_004383418.1| - 0.032 14.3 1.4 3.1 7.9 0.0 3.8 4 0 0 4 4 4 0 Transcription factor TFIIB repeat P5CR_dimer PF14748.6 gi|330506990|ref|YP_004383418.1| - 0.071 13.4 0.4 0.22 11.8 0.1 1.9 2 0 0 2 2 2 0 Pyrroline-5-carboxylate reductase dimerisation CRISPR_Cse1 PF09481.10 gi|330506990|ref|YP_004383418.1| - 0.11 11.5 0.5 0.16 11.0 0.5 1.3 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) PHP_C PF13263.6 gi|330506990|ref|YP_004383418.1| - 0.11 12.2 3.5 17 5.2 0.1 4.1 4 0 0 4 4 4 0 PHP-associated EutK_C PF16365.5 gi|330506990|ref|YP_004383418.1| - 0.14 12.2 0.2 15 5.7 0.1 2.4 1 1 1 2 2 2 0 Ethanolamine utilization protein EutK C-terminus DUF61 PF01886.16 gi|330506991|ref|YP_004383419.1| - 5.1e-45 152.6 0.2 5.9e-45 152.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 OapA PF04225.12 gi|330506991|ref|YP_004383419.1| - 0.095 12.8 0.1 1.8 8.7 0.0 2.1 2 0 0 2 2 2 0 Opacity-associated protein A LysM-like domain HD PF01966.22 gi|330506992|ref|YP_004383420.1| - 7.3e-11 42.4 3.2 1.8e-10 41.1 3.2 1.7 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 gi|330506992|ref|YP_004383420.1| - 0.094 12.2 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 HDOD domain MFS_1 PF07690.16 gi|330506993|ref|YP_004383421.1| - 4e-49 167.4 52.3 4e-49 167.4 52.3 2.4 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|330506993|ref|YP_004383421.1| - 2.8e-05 23.2 29.1 0.00083 18.3 3.0 3.4 2 1 0 3 3 3 2 MFS_1 like family MFS_3 PF05977.13 gi|330506993|ref|YP_004383421.1| - 0.0035 15.8 19.0 0.02 13.3 4.2 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector Popeye PF04831.13 gi|330506993|ref|YP_004383421.1| - 0.51 10.5 3.5 3.2 7.9 0.0 3.1 2 0 0 2 2 2 0 Popeye protein conserved region DUF2120 PF09893.9 gi|330506994|ref|YP_004383422.1| - 0.061 13.4 0.6 0.069 13.2 0.6 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) GIY-YIG PF01541.24 gi|330506994|ref|YP_004383422.1| - 0.13 12.6 1.9 2.3 8.6 0.6 2.4 2 1 0 2 2 2 0 GIY-YIG catalytic domain DDE_Tnp_IS1 PF03400.13 gi|330506995|ref|YP_004383423.1| - 0.0023 18.3 0.0 0.0037 17.6 0.0 1.3 1 0 0 1 1 1 1 IS1 transposase FAF PF11250.8 gi|330506995|ref|YP_004383423.1| - 0.14 12.4 0.9 14 6.0 0.1 2.9 4 0 0 4 4 4 0 Fantastic Four meristem regulator AMP-binding_C_2 PF14535.6 gi|330506999|ref|YP_004383427.1| - 2e-32 111.4 0.0 3.9e-32 110.4 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|330506999|ref|YP_004383427.1| - 4.9e-16 58.4 0.2 1.4e-15 56.8 0.0 1.8 2 0 0 2 2 2 1 AMP-binding enzyme LuxE PF04443.12 gi|330506999|ref|YP_004383427.1| - 0.00011 21.3 0.0 0.0024 17.0 0.0 2.1 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE ACT PF01842.25 gi|330507000|ref|YP_004383428.1| - 3.6e-15 55.4 0.1 6.2e-09 35.5 0.0 2.3 2 1 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|330507000|ref|YP_004383428.1| - 1.4e-05 25.5 0.5 0.019 15.5 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|330507000|ref|YP_004383428.1| - 0.00056 19.7 0.1 0.015 15.1 0.0 2.7 2 1 1 3 3 3 1 ACT domain ACT_6 PF13740.6 gi|330507000|ref|YP_004383428.1| - 0.037 14.0 0.0 0.17 11.9 0.0 2.0 2 1 0 2 2 2 0 ACT domain DDE_Tnp_IS1 PF03400.13 gi|330507002|ref|YP_004383430.1| - 0.0023 18.3 0.0 0.0037 17.6 0.0 1.3 1 0 0 1 1 1 1 IS1 transposase FAF PF11250.8 gi|330507002|ref|YP_004383430.1| - 0.14 12.4 0.9 14 6.0 0.1 2.9 4 0 0 4 4 4 0 Fantastic Four meristem regulator Zn_Tnp_IS1 PF03811.13 gi|330507003|ref|YP_004383431.1| - 0.021 14.5 1.0 0.036 13.8 1.0 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_23 PF13384.6 gi|330507003|ref|YP_004383431.1| - 0.032 14.0 0.1 0.05 13.4 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain LtuA PF17446.2 gi|330507003|ref|YP_004383431.1| - 0.036 14.5 0.1 0.069 13.6 0.1 1.5 1 0 0 1 1 1 0 Late transcription unit A HTH_40 PF14493.6 gi|330507003|ref|YP_004383431.1| - 0.12 12.9 0.2 0.16 12.4 0.2 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3731 PF12531.8 gi|330507005|ref|YP_004383433.1| - 0.016 15.0 0.3 0.018 14.9 0.3 1.0 1 0 0 1 1 1 0 DNA-K related protein SprT-like PF10263.9 gi|330507005|ref|YP_004383433.1| - 0.028 14.3 3.0 0.03 14.2 3.0 1.3 1 0 0 1 1 1 0 SprT-like family RNA_polI_A14 PF08203.11 gi|330507005|ref|YP_004383433.1| - 0.077 13.7 0.2 0.09 13.5 0.2 1.2 1 0 0 1 1 1 0 Yeast RNA polymerase I subunit RPA14 DUF2156 PF09924.9 gi|330507006|ref|YP_004383434.1| - 7.1e-45 153.3 0.0 8.7e-45 153.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) Acetyltransf_10 PF13673.7 gi|330507007|ref|YP_004383435.1| - 1.2e-12 47.8 0.0 1.6e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|330507007|ref|YP_004383435.1| - 1.9e-07 31.4 0.0 3e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|330507007|ref|YP_004383435.1| - 5.5e-07 29.8 0.1 6.5e-07 29.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|330507007|ref|YP_004383435.1| - 0.00021 21.2 0.0 0.00052 19.9 0.0 1.6 1 1 1 2 2 2 1 FR47-like protein AAA PF00004.29 gi|330507008|ref|YP_004383436.1| - 1.3e-95 316.8 0.0 4.9e-47 159.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|330507008|ref|YP_004383436.1| - 2.5e-27 94.8 0.0 3.1e-26 91.4 0.2 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|330507008|ref|YP_004383436.1| - 1e-24 86.1 2.9 4.8e-13 48.7 0.6 2.9 2 0 0 2 2 2 2 AAA+ lid domain AAA_16 PF13191.6 gi|330507008|ref|YP_004383436.1| - 1.3e-15 58.2 0.4 3.7e-07 30.7 0.0 3.7 3 2 0 3 3 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|330507008|ref|YP_004383436.1| - 1.8e-13 51.0 0.0 6.3e-07 29.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|330507008|ref|YP_004383436.1| - 3.1e-13 49.3 0.3 7.3e-13 48.1 0.3 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|330507008|ref|YP_004383436.1| - 4.9e-13 49.1 0.0 3.8e-05 23.5 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|330507008|ref|YP_004383436.1| - 2.2e-12 47.4 0.2 0.00024 21.4 0.0 4.1 2 2 1 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|330507008|ref|YP_004383436.1| - 5.1e-11 42.7 1.4 0.00027 20.9 0.0 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|330507008|ref|YP_004383436.1| - 7.3e-11 41.9 0.0 0.00043 19.6 0.0 2.8 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|330507008|ref|YP_004383436.1| - 8.2e-11 42.2 0.0 6.6e-05 23.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|330507008|ref|YP_004383436.1| - 9.5e-11 41.9 0.0 2.9e-05 24.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|330507008|ref|YP_004383436.1| - 1.6e-08 34.5 0.0 0.0054 16.5 0.0 3.1 3 0 0 3 3 3 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|330507008|ref|YP_004383436.1| - 4.3e-08 32.8 0.7 0.0061 16.0 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|330507008|ref|YP_004383436.1| - 5.6e-08 33.4 0.0 0.011 16.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|330507008|ref|YP_004383436.1| - 1.3e-07 31.5 0.1 0.022 14.5 0.0 3.1 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|330507008|ref|YP_004383436.1| - 1.3e-07 31.6 0.0 0.0092 15.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|330507008|ref|YP_004383436.1| - 7.1e-07 29.3 0.2 0.11 12.3 0.0 3.8 3 1 1 4 4 4 2 NACHT domain RNA_helicase PF00910.22 gi|330507008|ref|YP_004383436.1| - 8.4e-07 29.4 0.0 0.062 13.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|330507008|ref|YP_004383436.1| - 1.2e-06 28.1 0.0 0.033 13.7 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_28 PF13521.6 gi|330507008|ref|YP_004383436.1| - 1.9e-06 28.2 0.0 0.076 13.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|330507008|ref|YP_004383436.1| - 3.2e-06 27.7 0.0 0.099 13.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter Zeta_toxin PF06414.12 gi|330507008|ref|YP_004383436.1| - 3.4e-06 26.5 0.1 0.045 13.0 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin TsaE PF02367.17 gi|330507008|ref|YP_004383436.1| - 6e-06 26.3 0.0 0.19 11.7 0.0 2.8 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF815 PF05673.13 gi|330507008|ref|YP_004383436.1| - 8.8e-06 25.1 0.0 0.039 13.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|330507008|ref|YP_004383436.1| - 1.1e-05 25.5 0.1 0.71 9.7 0.0 3.7 2 2 1 3 3 3 2 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|330507008|ref|YP_004383436.1| - 1.2e-05 25.0 5.0 0.21 11.2 0.3 4.0 2 2 1 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|330507008|ref|YP_004383436.1| - 2.3e-05 24.2 0.0 0.19 11.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|330507008|ref|YP_004383436.1| - 2.6e-05 23.6 0.0 0.19 10.9 0.0 2.6 3 0 0 3 3 2 2 NB-ARC domain Parvo_NS1 PF01057.17 gi|330507008|ref|YP_004383436.1| - 2.6e-05 23.5 0.0 0.19 10.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|330507008|ref|YP_004383436.1| - 5.5e-05 23.0 0.0 0.47 10.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|330507008|ref|YP_004383436.1| - 0.00013 21.9 0.0 0.29 10.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|330507008|ref|YP_004383436.1| - 0.00021 20.7 0.3 0.72 9.1 0.0 2.7 2 1 0 2 2 2 2 KaiC Bac_DnaA PF00308.18 gi|330507008|ref|YP_004383436.1| - 0.00029 20.8 0.1 1.4 8.7 0.0 3.2 2 1 0 2 2 2 2 Bacterial dnaA protein PhoH PF02562.16 gi|330507008|ref|YP_004383436.1| - 0.0003 20.3 0.1 0.97 8.8 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein DUF2075 PF09848.9 gi|330507008|ref|YP_004383436.1| - 0.00045 19.6 0.0 0.38 10.0 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Guanylate_kin PF00625.21 gi|330507008|ref|YP_004383436.1| - 0.00099 18.8 0.1 11 5.7 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase AAA_19 PF13245.6 gi|330507008|ref|YP_004383436.1| - 0.001 19.4 0.0 2 8.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|330507008|ref|YP_004383436.1| - 0.0011 18.5 0.0 2.7 7.4 0.0 3.0 3 0 0 3 3 2 2 Bacterial TniB protein Sigma54_activ_2 PF14532.6 gi|330507008|ref|YP_004383436.1| - 0.002 18.3 0.0 2.6 8.1 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.6 gi|330507008|ref|YP_004383436.1| - 0.0022 18.4 0.0 2 8.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain AFG1_ATPase PF03969.16 gi|330507008|ref|YP_004383436.1| - 0.0026 16.7 0.0 1.1 8.0 0.0 2.4 2 0 0 2 2 2 1 AFG1-like ATPase ResIII PF04851.15 gi|330507008|ref|YP_004383436.1| - 0.0031 17.5 0.0 1 9.3 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit NTPase_1 PF03266.15 gi|330507008|ref|YP_004383436.1| - 0.0032 17.4 0.0 1.9 8.3 0.0 2.7 2 0 0 2 2 2 1 NTPase CPT PF07931.12 gi|330507008|ref|YP_004383436.1| - 0.0064 16.4 0.0 3.5 7.5 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Vps4_C PF09336.10 gi|330507008|ref|YP_004383436.1| - 0.0097 15.9 0.1 3.6 7.7 0.0 2.7 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain Hydin_ADK PF17213.3 gi|330507008|ref|YP_004383436.1| - 0.01 16.1 0.3 2.8 8.2 0.0 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain T2SSE PF00437.20 gi|330507008|ref|YP_004383436.1| - 0.01 14.9 0.0 1.3 8.1 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Cytidylate_kin PF02224.18 gi|330507008|ref|YP_004383436.1| - 0.012 15.3 0.1 5.9 6.6 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|330507008|ref|YP_004383436.1| - 0.013 15.3 0.0 5.3 6.7 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.14 gi|330507008|ref|YP_004383436.1| - 0.019 14.2 0.0 1.4 8.1 0.0 2.7 2 1 0 3 3 3 0 KAP family P-loop domain PduV-EutP PF10662.9 gi|330507008|ref|YP_004383436.1| - 0.032 14.0 0.0 11 5.8 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.6 gi|330507008|ref|YP_004383436.1| - 0.033 13.9 0.0 11 5.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SKI PF01202.22 gi|330507008|ref|YP_004383436.1| - 0.042 14.0 0.0 13 5.9 0.0 3.0 3 0 0 3 3 3 0 Shikimate kinase MCM PF00493.23 gi|330507008|ref|YP_004383436.1| - 0.059 12.5 0.0 3 6.9 0.0 2.4 2 0 0 2 2 2 0 MCM P-loop domain cobW PF02492.19 gi|330507008|ref|YP_004383436.1| - 0.064 12.8 0.1 15 5.1 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Torsin PF06309.11 gi|330507008|ref|YP_004383436.1| - 0.073 13.2 0.0 8.8 6.4 0.0 2.4 2 0 0 2 2 2 0 Torsin IPT PF01745.16 gi|330507008|ref|YP_004383436.1| - 0.18 11.2 0.1 13 5.1 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase AAA_23 PF13476.6 gi|330507008|ref|YP_004383436.1| - 0.18 12.3 0.0 15 6.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain GDP_Man_Dehyd PF16363.5 gi|330507010|ref|YP_004383438.1| - 0.016 14.6 0.0 0.016 14.6 0.0 1.0 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Acylphosphatase PF00708.18 gi|330507011|ref|YP_004383439.1| - 1.2e-12 48.1 1.0 2.2e-12 47.2 0.1 1.8 2 0 0 2 2 2 1 Acylphosphatase DUF812 PF05667.11 gi|330507011|ref|YP_004383439.1| - 0.0004 19.4 1.8 0.00047 19.2 1.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF812) DUF2353 PF09789.9 gi|330507011|ref|YP_004383439.1| - 0.0022 17.4 1.5 0.0031 16.9 1.4 1.4 1 1 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) TolA_bind_tri PF16331.5 gi|330507011|ref|YP_004383439.1| - 0.0049 16.9 0.3 0.016 15.3 0.3 1.9 1 1 0 1 1 1 1 TolA binding protein trimerisation Spc7 PF08317.11 gi|330507011|ref|YP_004383439.1| - 0.0061 15.5 0.9 0.0067 15.4 0.9 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF1664 PF07889.12 gi|330507011|ref|YP_004383439.1| - 0.015 15.3 4.0 0.11 12.6 2.5 2.6 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) IFT57 PF10498.9 gi|330507011|ref|YP_004383439.1| - 0.016 14.2 1.7 0.021 13.8 1.7 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF4618 PF15397.6 gi|330507011|ref|YP_004383439.1| - 0.021 14.2 2.1 0.024 14.1 1.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) BLOC1_2 PF10046.9 gi|330507011|ref|YP_004383439.1| - 0.028 14.7 1.9 0.12 12.7 0.6 2.3 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fez1 PF06818.15 gi|330507011|ref|YP_004383439.1| - 0.03 14.8 1.4 0.038 14.4 0.5 1.6 1 1 1 2 2 2 0 Fez1 BORCS8 PF10167.9 gi|330507011|ref|YP_004383439.1| - 0.042 13.8 0.8 4.7 7.2 0.2 2.5 2 1 0 2 2 2 0 BLOC-1-related complex sub-unit 8 DUF2730 PF10805.8 gi|330507011|ref|YP_004383439.1| - 0.043 13.9 3.4 0.69 10.0 0.2 2.5 2 1 1 3 3 2 0 Protein of unknown function (DUF2730) DNA_ligase_OB PF03120.16 gi|330507011|ref|YP_004383439.1| - 0.044 13.7 0.2 0.1 12.5 0.2 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase OB-fold domain Phage_GP20 PF06810.11 gi|330507011|ref|YP_004383439.1| - 0.047 13.5 5.6 0.047 13.5 2.2 2.5 1 1 2 3 3 3 0 Phage minor structural protein GP20 PEARLI-4 PF05278.12 gi|330507011|ref|YP_004383439.1| - 0.057 13.0 2.6 0.065 12.8 2.6 1.2 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) KxDL PF10241.9 gi|330507011|ref|YP_004383439.1| - 0.06 13.6 4.8 1.2 9.4 0.7 3.1 2 1 1 3 3 3 0 Uncharacterized conserved protein USP8_interact PF08941.10 gi|330507011|ref|YP_004383439.1| - 0.06 13.1 1.1 0.071 12.9 0.2 1.6 2 0 0 2 2 2 0 USP8 interacting Cytochrom_B562 PF07361.11 gi|330507011|ref|YP_004383439.1| - 0.077 13.7 5.6 0.98 10.1 3.3 3.0 2 1 0 2 2 2 0 Cytochrome b562 DASH_Duo1 PF08651.10 gi|330507011|ref|YP_004383439.1| - 0.096 12.5 0.1 4.6 7.1 0.0 2.8 1 1 2 3 3 3 0 DASH complex subunit Duo1 Tektin PF03148.14 gi|330507011|ref|YP_004383439.1| - 0.11 11.3 1.2 0.14 10.9 0.7 1.4 1 1 0 1 1 1 0 Tektin family GAS PF13851.6 gi|330507011|ref|YP_004383439.1| - 0.11 11.8 3.7 0.04 13.3 0.9 1.7 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Vps51 PF08700.11 gi|330507011|ref|YP_004383439.1| - 0.13 12.4 5.5 0.47 10.6 1.3 3.0 1 1 3 4 4 4 0 Vps51/Vps67 YabA PF06156.13 gi|330507011|ref|YP_004383439.1| - 0.13 12.9 1.8 0.17 12.6 0.4 1.9 2 0 0 2 2 2 0 Initiation control protein YabA BST2 PF16716.5 gi|330507011|ref|YP_004383439.1| - 0.15 12.7 0.2 0.37 11.4 0.2 1.7 1 0 0 1 1 1 0 Bone marrow stromal antigen 2 TMPIT PF07851.13 gi|330507011|ref|YP_004383439.1| - 0.18 11.1 0.2 0.29 10.3 0.2 1.3 1 0 0 1 1 1 0 TMPIT-like protein Baculo_19 PF04798.12 gi|330507011|ref|YP_004383439.1| - 0.21 11.3 0.6 0.89 9.3 0.1 2.2 2 1 1 3 3 3 0 Baculovirus 19 kDa protein conserved region DUF948 PF06103.11 gi|330507011|ref|YP_004383439.1| - 0.22 11.8 0.8 2.4 8.5 0.1 2.4 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF3740 PF12548.8 gi|330507011|ref|YP_004383439.1| - 0.35 11.3 6.1 0.76 10.2 0.6 2.7 1 1 1 2 2 2 0 Sulfatase protein DUF724 PF05266.14 gi|330507011|ref|YP_004383439.1| - 0.5 10.2 4.5 0.63 9.8 3.7 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF724) XhlA PF10779.9 gi|330507011|ref|YP_004383439.1| - 0.54 10.5 4.3 0.35 11.1 1.5 2.2 2 1 1 3 3 2 0 Haemolysin XhlA CsbD PF05532.12 gi|330507011|ref|YP_004383439.1| - 0.57 10.1 8.6 0.55 10.2 1.6 2.9 2 1 1 3 3 3 0 CsbD-like COMP PF11598.8 gi|330507011|ref|YP_004383439.1| - 5.3 7.6 7.1 2e+02 2.6 3.4 3.5 1 1 1 2 2 2 0 Cartilage oligomeric matrix protein SHOCT PF09851.9 gi|330507012|ref|YP_004383440.1| - 0.035 13.8 0.0 0.075 12.8 0.0 1.6 1 0 0 1 1 1 0 Short C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|330507013|ref|YP_004383441.1| - 1.7e-23 82.3 0.2 2.9e-23 81.6 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330507013|ref|YP_004383441.1| - 3.6e-22 78.8 0.0 8.4e-22 77.6 0.0 1.6 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|330507013|ref|YP_004383441.1| - 8.2e-13 47.6 0.6 1.8e-12 46.5 0.6 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|330507013|ref|YP_004383441.1| - 0.058 12.9 1.4 1.9 8.1 0.1 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|330507013|ref|YP_004383441.1| - 0.059 13.0 1.4 0.13 12.0 1.4 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|330507013|ref|YP_004383441.1| - 0.087 12.9 0.2 0.15 12.1 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-C2HC5 PF06221.13 gi|330507013|ref|YP_004383441.1| - 0.13 12.2 0.2 0.26 11.3 0.2 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type CortBP2 PF09727.9 gi|330507013|ref|YP_004383441.1| - 0.42 10.5 3.0 3.9 7.3 0.1 2.2 2 0 0 2 2 2 0 Cortactin-binding protein-2 Y1_Tnp PF01797.16 gi|330507014|ref|YP_004383442.1| - 2.8e-35 121.0 0.3 3.2e-35 120.8 0.3 1.0 1 0 0 1 1 1 1 Transposase IS200 like Acylphosphatase PF00708.18 gi|330507015|ref|YP_004383443.1| - 2.5e-06 27.8 0.0 3.7e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Acylphosphatase Methyltransf_24 PF13578.6 gi|330507017|ref|YP_004383445.1| - 8.9e-11 42.8 0.0 1.5e-10 42.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain HicB_lk_antitox PF15919.5 gi|330507018|ref|YP_004383446.1| - 3e-06 27.4 0.0 3.7e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Acylphosphatase PF00708.18 gi|330507019|ref|YP_004383447.1| - 1.8e-20 73.1 0.2 4.7e-20 71.8 0.0 1.7 2 0 0 2 2 2 1 Acylphosphatase DUF1664 PF07889.12 gi|330507019|ref|YP_004383447.1| - 0.0022 18.0 3.9 0.0041 17.2 3.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) Cas_Cas02710 PF09670.10 gi|330507019|ref|YP_004383447.1| - 0.0028 16.5 0.8 0.051 12.4 0.5 2.0 1 1 1 2 2 2 1 CRISPR-associated protein (Cas_Cas02710) DUF1115 PF06544.12 gi|330507019|ref|YP_004383447.1| - 0.045 13.9 0.2 0.19 11.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1115) DUF3552 PF12072.8 gi|330507019|ref|YP_004383447.1| - 0.096 12.1 8.0 0.14 11.6 8.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Spc7 PF08317.11 gi|330507019|ref|YP_004383447.1| - 0.12 11.3 5.4 0.22 10.3 4.1 1.8 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF16 PF01519.16 gi|330507019|ref|YP_004383447.1| - 0.53 10.8 9.8 0.48 10.9 7.9 1.8 2 1 0 2 2 2 0 Protein of unknown function DUF16 DUF104 PF01954.16 gi|330507020|ref|YP_004383448.1| - 1e-14 54.7 3.4 1.2e-14 54.5 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 MazE_antitoxin PF04014.18 gi|330507020|ref|YP_004383448.1| - 0.0014 18.5 1.1 0.0038 17.1 0.3 1.9 1 1 1 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin TrkA_C PF02080.21 gi|330507020|ref|YP_004383448.1| - 0.047 13.5 0.0 0.053 13.4 0.0 1.2 1 0 0 1 1 1 0 TrkA-C domain PIN PF01850.21 gi|330507021|ref|YP_004383449.1| - 2.1e-12 47.6 0.0 2.6e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 PIN domain B12-binding PF02310.19 gi|330507021|ref|YP_004383449.1| - 0.069 13.2 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 B12 binding domain tRNA_lig_kinase PF08303.11 gi|330507022|ref|YP_004383450.1| - 0.027 14.6 0.2 0.03 14.4 0.2 1.2 1 0 0 1 1 1 0 tRNA ligase kinase domain Dna2 PF08696.11 gi|330507022|ref|YP_004383450.1| - 0.027 14.3 0.3 0.033 14.0 0.3 1.2 1 0 0 1 1 1 0 DNA replication factor Dna2 PspB PF06667.12 gi|330507022|ref|YP_004383450.1| - 0.041 13.9 0.4 0.041 13.9 0.4 1.8 2 0 0 2 2 2 0 Phage shock protein B DUF1493 PF07377.12 gi|330507022|ref|YP_004383450.1| - 0.13 12.7 2.3 0.16 12.4 2.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1493) PIN PF01850.21 gi|330507023|ref|YP_004383451.1| - 2.6e-12 47.3 0.0 3.2e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 PIN domain HicB_lk_antitox PF15919.5 gi|330507024|ref|YP_004383452.1| - 5e-10 39.5 0.0 5.3e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|330507024|ref|YP_004383452.1| - 0.0011 18.9 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) PHD_like PF12910.7 gi|330507024|ref|YP_004383452.1| - 0.11 12.5 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system HicA_toxin PF07927.12 gi|330507025|ref|YP_004383453.1| - 5.1e-13 48.8 0.1 5.7e-13 48.7 0.1 1.0 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, DUF104 PF01954.16 gi|330507026|ref|YP_004383454.1| - 5.3e-12 46.0 4.6 5.9e-12 45.8 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 MazE_antitoxin PF04014.18 gi|330507026|ref|YP_004383454.1| - 0.1 12.6 0.3 0.16 11.9 0.3 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin Transposase_20 PF02371.16 gi|330507027|ref|YP_004383455.1| - 3.2e-25 88.3 0.1 5.9e-25 87.4 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330507027|ref|YP_004383455.1| - 3.7e-20 72.4 0.0 7.3e-20 71.4 0.0 1.5 1 0 0 1 1 1 1 Transposase Init_tRNA_PT PF04179.12 gi|330507027|ref|YP_004383455.1| - 0.038 14.3 1.0 0.088 13.1 0.1 2.0 2 0 0 2 2 2 0 Rit1 DUSP-like domain UPF0175 PF03683.13 gi|330507030|ref|YP_004383458.1| - 4.4e-12 45.5 0.2 5.8e-12 45.2 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_psq PF05225.16 gi|330507030|ref|YP_004383458.1| - 0.065 13.0 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Epimerase_2 PF02350.19 gi|330507031|ref|YP_004383459.1| - 1.6e-14 53.5 0.0 2.1e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_2 PF00535.26 gi|330507032|ref|YP_004383460.1| - 9e-21 74.4 0.0 1.2e-20 74.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330507032|ref|YP_004383460.1| - 0.00025 21.0 0.0 0.00032 20.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|330507032|ref|YP_004383460.1| - 0.0013 19.2 0.0 0.11 13.0 0.0 2.5 2 1 1 3 3 3 1 Glycosyl transferase family 2 DUF1732 PF08340.11 gi|330507032|ref|YP_004383460.1| - 0.16 11.9 0.5 3.3 7.7 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1732) DUF373 PF04123.13 gi|330507032|ref|YP_004383460.1| - 0.68 9.3 4.0 1.4 8.3 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF373) PDDEXK_3 PF13366.6 gi|330507033|ref|YP_004383461.1| - 2.8e-42 143.8 0.0 3.3e-42 143.6 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2283 PF10049.9 gi|330507034|ref|YP_004383462.1| - 4.6e-14 52.4 1.7 5.7e-14 52.1 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Epimerase_2 PF02350.19 gi|330507035|ref|YP_004383463.1| - 4.8e-17 61.8 0.0 6e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase UPF0175 PF03683.13 gi|330507037|ref|YP_004383465.1| - 4.4e-12 45.5 0.2 5.8e-12 45.2 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_psq PF05225.16 gi|330507037|ref|YP_004383465.1| - 0.065 13.0 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain PIN PF01850.21 gi|330507039|ref|YP_004383467.1| - 0.00061 20.3 0.0 0.00072 20.1 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|330507039|ref|YP_004383467.1| - 0.024 14.9 0.0 0.033 14.5 0.0 1.3 1 0 0 1 1 1 0 PIN like domain Rop PF01815.16 gi|330507040|ref|YP_004383468.1| - 0.057 13.3 0.1 3.1 7.7 0.0 2.0 1 1 1 2 2 2 0 Rop protein Glycos_transf_2 PF00535.26 gi|330507041|ref|YP_004383469.1| - 8.2e-22 77.8 0.0 1.1e-21 77.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330507041|ref|YP_004383469.1| - 0.00035 20.5 0.0 0.00047 20.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|330507041|ref|YP_004383469.1| - 0.00075 20.0 0.0 0.11 13.0 0.0 2.5 2 1 1 3 3 3 1 Glycosyl transferase family 2 DUF1732 PF08340.11 gi|330507041|ref|YP_004383469.1| - 0.16 12.0 0.6 3.2 7.8 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1732) DUF373 PF04123.13 gi|330507041|ref|YP_004383469.1| - 0.61 9.5 4.0 1.3 8.4 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF373) PDDEXK_3 PF13366.6 gi|330507042|ref|YP_004383470.1| - 7.6e-43 145.6 0.0 9e-43 145.4 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2283 PF10049.9 gi|330507043|ref|YP_004383471.1| - 4.6e-14 52.4 1.7 5.7e-14 52.1 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Epimerase_2 PF02350.19 gi|330507044|ref|YP_004383472.1| - 1e-17 64.1 0.0 1.3e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase PIN PF01850.21 gi|330507045|ref|YP_004383473.1| - 3.2e-16 59.9 2.7 3.8e-16 59.7 2.7 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|330507045|ref|YP_004383473.1| - 1.5e-05 25.8 0.3 2.6e-05 24.9 0.3 1.5 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|330507045|ref|YP_004383473.1| - 7.7e-05 23.3 0.2 0.00017 22.1 0.2 1.8 1 1 0 1 1 1 1 PIN domain MLTD_N PF06474.12 gi|330507046|ref|YP_004383474.1| - 0.13 12.5 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 MltD lipid attachment motif HicB_lk_antitox PF15919.5 gi|330507047|ref|YP_004383475.1| - 0.00044 20.3 0.0 0.00048 20.2 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|330507047|ref|YP_004383475.1| - 0.028 14.4 0.0 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) GntR PF00392.21 gi|330507047|ref|YP_004383475.1| - 0.03 14.0 0.1 0.053 13.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HicB_lk_antitox PF15919.5 gi|330507048|ref|YP_004383476.1| - 9.5e-09 35.4 0.0 9.5e-09 35.4 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|330507048|ref|YP_004383476.1| - 0.08 12.9 0.0 0.087 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) VAPB_antitox PF02697.14 gi|330507049|ref|YP_004383477.1| - 0.038 14.7 0.0 0.084 13.7 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin UPF0175 PF03683.13 gi|330507050|ref|YP_004383478.1| - 5.5e-13 48.4 0.2 9.1e-13 47.7 0.2 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.21 gi|330507050|ref|YP_004383478.1| - 0.021 14.8 0.8 0.021 14.8 0.8 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Epimerase_2 PF02350.19 gi|330507051|ref|YP_004383479.1| - 5.5e-17 61.7 0.0 6.3e-17 61.5 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Acylphosphatase PF00708.18 gi|330507052|ref|YP_004383480.1| - 2.5e-18 66.3 0.3 2.5e-18 66.3 0.3 1.9 2 1 0 2 2 2 1 Acylphosphatase Med10 PF09748.9 gi|330507052|ref|YP_004383480.1| - 0.025 14.5 0.7 0.63 10.0 0.1 2.5 1 1 2 3 3 3 0 Transcription factor subunit Med10 of Mediator complex DUF948 PF06103.11 gi|330507052|ref|YP_004383480.1| - 0.031 14.5 1.3 0.19 12.0 1.2 2.2 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.12 gi|330507052|ref|YP_004383480.1| - 0.083 12.9 0.9 0.46 10.5 0.6 1.9 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus SPT16 PF08644.11 gi|330507052|ref|YP_004383480.1| - 0.094 12.9 0.4 0.13 12.4 0.4 1.2 1 0 0 1 1 1 0 FACT complex subunit (SPT16/CDC68) DUF1664 PF07889.12 gi|330507052|ref|YP_004383480.1| - 0.19 11.8 3.7 0.83 9.7 3.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) YdjM PF04307.14 gi|330507053|ref|YP_004383481.1| - 6.5e-13 48.4 8.9 8.5e-13 48.0 8.9 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|330507053|ref|YP_004383481.1| - 0.0025 17.8 0.1 0.004 17.2 0.1 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C HTH_45 PF14947.6 gi|330507054|ref|YP_004383482.1| - 1.2e-17 63.6 0.3 1.4e-17 63.5 0.3 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|330507054|ref|YP_004383482.1| - 0.029 14.2 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_47 PF16221.5 gi|330507054|ref|YP_004383482.1| - 0.047 13.2 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix Insulin_TMD PF17870.1 gi|330507055|ref|YP_004383483.1| - 0.55 10.3 6.1 4 7.6 0.8 2.2 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment CPBP PF02517.16 gi|330507056|ref|YP_004383484.1| - 4e-14 52.7 9.0 4e-14 52.7 9.0 2.8 3 1 1 4 4 4 1 CPBP intramembrane metalloprotease Glyco_hydro_57 PF03065.15 gi|330507057|ref|YP_004383485.1| - 6.2e-60 203.1 0.6 8.6e-60 202.6 0.6 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|330507057|ref|YP_004383485.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase GDE_C PF06202.14 gi|330507058|ref|YP_004383486.1| - 1.1e-107 360.3 0.0 1.9e-107 359.5 0.0 1.3 2 0 0 2 2 2 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|330507058|ref|YP_004383486.1| - 4.5e-58 196.3 0.0 5.8e-58 195.9 0.0 1.1 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.13 gi|330507058|ref|YP_004383486.1| - 2.1e-05 23.9 0.0 3.1e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Glyco_hydro_100 PF12899.7 gi|330507058|ref|YP_004383486.1| - 0.0093 14.7 0.0 5.8 5.5 0.0 2.8 3 0 0 3 3 3 2 Alkaline and neutral invertase TrkH PF02386.16 gi|330507059|ref|YP_004383487.1| - 2.2e-60 204.5 13.4 2e-32 112.3 6.2 3.0 2 1 0 2 2 2 2 Cation transport protein PHBC_N PF12551.8 gi|330507059|ref|YP_004383487.1| - 0.36 10.6 0.1 0.36 10.6 0.1 2.5 3 0 0 3 3 3 0 Poly-beta-hydroxybutyrate polymerase N terminal TMEM40 PF15817.5 gi|330507059|ref|YP_004383487.1| - 0.55 10.0 5.3 0.71 9.6 0.0 3.0 3 1 0 3 3 3 0 Transmembrane protein 40 family TrkA_N PF02254.18 gi|330507060|ref|YP_004383488.1| - 1.3e-51 173.7 3.5 7.9e-27 93.8 0.9 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|330507060|ref|YP_004383488.1| - 5.9e-16 58.1 0.1 3.1e-08 33.3 0.0 2.7 2 0 0 2 2 2 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|330507060|ref|YP_004383488.1| - 4.5e-11 43.1 1.5 4.9e-06 26.9 0.4 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding ApbA PF02558.16 gi|330507060|ref|YP_004383488.1| - 1.7e-09 37.5 0.2 0.00037 20.2 0.1 2.5 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|330507060|ref|YP_004383488.1| - 1.8e-09 37.8 1.2 0.00016 21.7 0.3 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_8 PF13450.6 gi|330507060|ref|YP_004383488.1| - 3e-08 33.8 0.1 0.00015 22.0 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Sacchrp_dh_NADP PF03435.18 gi|330507060|ref|YP_004383488.1| - 4.5e-08 33.4 1.8 3.4e-05 24.1 0.6 2.4 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|330507060|ref|YP_004383488.1| - 8.2e-08 31.8 2.7 0.0048 16.2 0.8 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|330507060|ref|YP_004383488.1| - 8.5e-07 29.5 1.0 0.065 13.8 0.1 2.8 2 0 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|330507060|ref|YP_004383488.1| - 4.7e-06 26.1 0.0 0.0024 17.2 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|330507060|ref|YP_004383488.1| - 2.7e-05 23.5 0.2 0.0013 18.0 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|330507060|ref|YP_004383488.1| - 6.4e-05 22.7 0.2 0.38 10.3 0.0 2.4 2 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|330507060|ref|YP_004383488.1| - 6.8e-05 23.4 0.9 0.008 16.7 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|330507060|ref|YP_004383488.1| - 7.7e-05 22.3 1.0 0.27 10.8 0.1 2.9 2 1 1 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|330507060|ref|YP_004383488.1| - 0.0001 22.2 1.3 0.17 11.8 0.1 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1188 PF06690.11 gi|330507060|ref|YP_004383488.1| - 0.00019 21.1 0.6 0.29 10.7 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF1188) Epimerase PF01370.21 gi|330507060|ref|YP_004383488.1| - 0.0006 19.3 1.1 0.32 10.4 0.2 2.2 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|330507060|ref|YP_004383488.1| - 0.0011 18.6 1.9 0.037 13.6 0.4 2.3 2 0 0 2 2 2 1 NmrA-like family HI0933_like PF03486.14 gi|330507060|ref|YP_004383488.1| - 0.0011 17.7 0.3 0.11 11.2 0.2 2.4 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_2 PF03446.15 gi|330507060|ref|YP_004383488.1| - 0.0033 17.6 2.7 0.62 10.2 0.1 2.6 3 0 0 3 3 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 gi|330507060|ref|YP_004383488.1| - 0.0088 16.5 0.2 1.9 9.0 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain NAD_Gly3P_dh_N PF01210.23 gi|330507060|ref|YP_004383488.1| - 0.012 15.6 0.1 0.99 9.4 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trp_halogenase PF04820.14 gi|330507060|ref|YP_004383488.1| - 0.012 14.5 0.0 0.35 9.7 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase GIDA PF01134.22 gi|330507060|ref|YP_004383488.1| - 0.013 14.6 0.0 0.025 13.7 0.0 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|330507060|ref|YP_004383488.1| - 0.033 13.4 0.4 1.4 8.1 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|330507060|ref|YP_004383488.1| - 0.052 12.6 0.2 0.56 9.2 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein 2-Hacid_dh_C PF02826.19 gi|330507060|ref|YP_004383488.1| - 0.057 12.8 0.2 0.71 9.2 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF111 PF01969.17 gi|330507061|ref|YP_004383489.1| - 1.2e-120 403.0 0.6 1.4e-120 402.8 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Aminotran_3 PF00202.21 gi|330507062|ref|YP_004383490.1| - 4.9e-65 219.8 0.0 6.2e-65 219.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Rop-like PF05082.13 gi|330507062|ref|YP_004383490.1| - 0.012 15.4 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 Rop-like HTH_16 PF12645.7 gi|330507062|ref|YP_004383490.1| - 0.14 12.2 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Porphobil_deam PF01379.20 gi|330507063|ref|YP_004383491.1| - 6.7e-68 228.2 0.1 9.3e-68 227.7 0.1 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|330507063|ref|YP_004383491.1| - 1e-08 35.5 0.2 2e-08 34.5 0.2 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain TP_methylase PF00590.20 gi|330507064|ref|YP_004383492.1| - 2.2e-50 171.6 0.3 8.4e-50 169.7 0.1 2.1 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.15 gi|330507064|ref|YP_004383492.1| - 1e-46 159.2 0.3 1.3e-46 158.8 0.3 1.2 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Radical_SAM PF04055.21 gi|330507065|ref|YP_004383493.1| - 1.9e-28 99.9 0.0 3.8e-28 99.0 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330507065|ref|YP_004383493.1| - 7e-10 39.3 0.0 1.3e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|330507065|ref|YP_004383493.1| - 6.9e-09 36.1 0.5 1.8e-08 34.7 0.5 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|330507065|ref|YP_004383493.1| - 7.2e-06 26.1 0.0 1.9e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain AAA PF00004.29 gi|330507066|ref|YP_004383494.1| - 2.3e-34 118.7 0.1 4.3e-34 117.8 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|330507066|ref|YP_004383494.1| - 1.4e-08 34.4 0.1 2.8e-08 33.4 0.1 1.5 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|330507066|ref|YP_004383494.1| - 1.9e-05 24.9 0.0 3.7e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|330507066|ref|YP_004383494.1| - 5.3e-05 22.5 0.0 0.0093 15.2 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|330507066|ref|YP_004383494.1| - 5.7e-05 23.1 0.0 9.2e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial dnaA protein RuvB_N PF05496.12 gi|330507066|ref|YP_004383494.1| - 0.00021 21.1 0.0 0.0013 18.5 0.0 2.2 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|330507066|ref|YP_004383494.1| - 0.00022 20.5 0.1 0.0006 19.1 0.0 1.7 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|330507066|ref|YP_004383494.1| - 0.00085 19.7 0.1 0.034 14.5 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|330507066|ref|YP_004383494.1| - 0.0015 18.0 0.0 0.0043 16.5 0.0 1.7 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|330507066|ref|YP_004383494.1| - 0.0029 18.1 0.0 0.0068 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|330507066|ref|YP_004383494.1| - 0.0042 17.1 0.1 0.015 15.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|330507066|ref|YP_004383494.1| - 0.0095 16.1 0.0 0.022 14.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|330507066|ref|YP_004383494.1| - 0.014 15.2 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|330507066|ref|YP_004383494.1| - 0.014 15.7 0.8 0.28 11.4 0.1 2.4 1 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|330507066|ref|YP_004383494.1| - 0.017 14.7 0.2 0.22 11.0 0.1 2.4 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|330507066|ref|YP_004383494.1| - 0.026 14.8 0.0 0.098 12.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|330507066|ref|YP_004383494.1| - 0.054 13.2 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|330507066|ref|YP_004383494.1| - 0.062 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TniB PF05621.11 gi|330507066|ref|YP_004383494.1| - 0.064 12.7 0.0 0.49 9.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein Sigma54_activat PF00158.26 gi|330507066|ref|YP_004383494.1| - 0.066 12.9 0.1 0.15 11.7 0.1 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain Kinesin PF00225.23 gi|330507066|ref|YP_004383494.1| - 0.082 11.8 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Kinesin motor domain ACT PF01842.25 gi|330507067|ref|YP_004383495.1| - 0.0065 16.2 0.4 0.015 15.1 0.0 1.9 2 0 0 2 2 2 1 ACT domain HTH_29 PF13551.6 gi|330507067|ref|YP_004383495.1| - 0.074 13.1 0.1 0.21 11.7 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix OCD_Mu_crystall PF02423.15 gi|330507068|ref|YP_004383496.1| - 3.9e-111 371.0 0.0 4.4e-111 370.9 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|330507068|ref|YP_004383496.1| - 0.0035 17.4 0.0 0.0054 16.8 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Radical_SAM PF04055.21 gi|330507069|ref|YP_004383497.1| - 9.6e-23 81.4 0.4 1.4e-22 80.8 0.4 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|330507069|ref|YP_004383497.1| - 2.3e-06 27.7 2.5 3e-06 27.4 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|330507069|ref|YP_004383497.1| - 0.00026 21.3 0.1 0.00056 20.2 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SRP19 PF01922.17 gi|330507070|ref|YP_004383498.1| - 2.8e-20 73.1 0.1 3.4e-20 72.8 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein PHP PF02811.19 gi|330507071|ref|YP_004383499.1| - 3.6e-09 37.1 0.0 5.3e-09 36.6 0.0 1.5 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|330507071|ref|YP_004383499.1| - 0.0017 17.9 0.0 0.0034 16.9 0.0 1.7 1 1 0 1 1 1 1 RNase P subunit p30 DUF2209 PF09974.9 gi|330507072|ref|YP_004383500.1| - 9.1e-30 103.5 0.0 1e-29 103.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) MMR_HSR1 PF01926.23 gi|330507073|ref|YP_004383501.1| - 7.9e-21 74.3 0.0 1.2e-20 73.6 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.6 gi|330507073|ref|YP_004383501.1| - 1.3e-17 64.2 0.0 3.8e-17 62.7 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal GTP-bdg_M PF16360.5 gi|330507073|ref|YP_004383501.1| - 1.3e-14 54.5 5.5 3.1e-14 53.3 5.5 1.6 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 gi|330507073|ref|YP_004383501.1| - 1.8e-09 37.3 0.0 3.7e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|330507073|ref|YP_004383501.1| - 2.3e-07 30.9 0.4 0.02 14.8 0.1 2.3 1 1 1 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|330507073|ref|YP_004383501.1| - 6.4e-05 22.9 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain GTP_EFTU PF00009.27 gi|330507073|ref|YP_004383501.1| - 0.0001 21.9 0.3 0.0049 16.4 0.3 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|330507073|ref|YP_004383501.1| - 0.00094 19.3 0.3 0.0032 17.6 0.1 1.9 2 1 1 3 3 3 1 Dynamin family CLP1_P PF16575.5 gi|330507073|ref|YP_004383501.1| - 0.026 14.3 0.1 6 6.6 0.1 3.1 2 1 1 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ABC_tran PF00005.27 gi|330507073|ref|YP_004383501.1| - 0.029 14.9 0.1 0.054 14.0 0.1 1.6 1 1 0 1 1 1 0 ABC transporter cobW PF02492.19 gi|330507073|ref|YP_004383501.1| - 0.053 13.1 1.4 7.4 6.1 0.2 2.3 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|330507073|ref|YP_004383501.1| - 0.058 13.2 0.2 0.23 11.2 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AIG1 PF04548.16 gi|330507073|ref|YP_004383501.1| - 0.068 12.5 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 AIG1 family ApbE PF02424.15 gi|330507074|ref|YP_004383502.1| - 0.001 18.7 3.8 0.16 11.5 0.0 2.9 2 1 0 3 3 3 2 ApbE family MC1 PF05854.11 gi|330507075|ref|YP_004383503.1| - 2.5e-37 127.0 1.8 3.2e-37 126.7 1.8 1.1 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 CofC PF01983.16 gi|330507076|ref|YP_004383504.1| - 4.1e-43 147.1 0.0 4.9e-43 146.8 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|330507076|ref|YP_004383504.1| - 0.0033 17.8 0.0 0.0039 17.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain F420_ligase PF01996.16 gi|330507077|ref|YP_004383505.1| - 1.2e-56 191.8 0.0 1.5e-56 191.5 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase eIF-5_eIF-2B PF01873.17 gi|330507079|ref|YP_004383507.1| - 3.4e-37 126.9 0.0 5.2e-37 126.3 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|330507079|ref|YP_004383507.1| - 5.5e-11 42.3 0.5 1e-10 41.4 0.5 1.4 1 0 0 1 1 1 1 TRAM domain ZF-HD_dimer PF04770.12 gi|330507079|ref|YP_004383507.1| - 0.11 12.9 0.1 0.2 12.0 0.1 1.4 1 0 0 1 1 1 0 ZF-HD protein dimerisation region S1 PF00575.23 gi|330507079|ref|YP_004383507.1| - 0.24 11.8 2.2 18 5.8 0.1 2.9 3 0 0 3 3 3 0 S1 RNA binding domain zf-RanBP PF00641.18 gi|330507079|ref|YP_004383507.1| - 0.31 10.4 0.1 0.31 10.4 0.1 1.6 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Ribosomal_L16 PF00252.18 gi|330507080|ref|YP_004383508.1| - 4.7e-36 123.7 0.1 5.9e-36 123.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Asparaginase PF00710.20 gi|330507081|ref|YP_004383509.1| - 1.7e-60 203.9 0.9 3.1e-60 203.0 0.9 1.4 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|330507081|ref|YP_004383509.1| - 1.5e-29 102.6 0.0 1.4e-28 99.4 0.0 2.2 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|330507081|ref|YP_004383509.1| - 3.2e-18 64.8 0.4 7e-18 63.7 0.4 1.6 1 0 0 1 1 1 1 GatD N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|330507082|ref|YP_004383510.1| - 3.1e-23 81.5 0.5 9.7e-23 79.9 0.0 2.1 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330507082|ref|YP_004383510.1| - 4.1e-07 30.2 0.7 4.1e-07 30.2 0.7 1.8 2 0 0 2 2 2 1 Probable transposase DZR PF12773.7 gi|330507082|ref|YP_004383510.1| - 0.029 14.4 0.3 0.075 13.1 0.3 1.6 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|330507082|ref|YP_004383510.1| - 0.069 13.2 0.0 0.19 11.8 0.0 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4337 PF14235.6 gi|330507082|ref|YP_004383510.1| - 1.2 9.3 4.6 16 5.6 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) Methyltransf_31 PF13847.6 gi|330507083|ref|YP_004383511.1| - 3.3e-21 75.7 0.0 4.2e-21 75.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330507083|ref|YP_004383511.1| - 3.9e-21 75.6 0.0 8.4e-21 74.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507083|ref|YP_004383511.1| - 4.9e-20 72.0 0.0 8.8e-20 71.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330507083|ref|YP_004383511.1| - 8.3e-15 55.3 0.0 1.3e-14 54.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330507083|ref|YP_004383511.1| - 2.3e-13 50.3 0.0 3.5e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330507083|ref|YP_004383511.1| - 5.8e-12 45.4 0.0 1.1e-11 44.5 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|330507083|ref|YP_004383511.1| - 4.7e-08 32.8 0.0 7.5e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|330507083|ref|YP_004383511.1| - 1.6e-05 24.4 0.0 1.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|330507083|ref|YP_004383511.1| - 2.7e-05 24.0 0.0 3.9e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|330507083|ref|YP_004383511.1| - 0.0002 21.1 0.0 0.00028 20.6 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 gi|330507083|ref|YP_004383511.1| - 0.00021 20.7 0.0 0.00031 20.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain RrnaAD PF00398.20 gi|330507083|ref|YP_004383511.1| - 0.00031 19.9 0.0 0.00049 19.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DREV PF05219.12 gi|330507083|ref|YP_004383511.1| - 0.00038 19.6 0.0 0.00062 18.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_4 PF02390.17 gi|330507083|ref|YP_004383511.1| - 0.00063 19.3 0.0 0.0016 18.0 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase TehB PF03848.14 gi|330507083|ref|YP_004383511.1| - 0.099 12.0 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 gi|330507083|ref|YP_004383511.1| - 0.13 11.2 0.0 0.26 10.2 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) Ham1p_like PF01725.16 gi|330507084|ref|YP_004383512.1| - 1.6e-46 158.6 0.0 1.8e-46 158.4 0.0 1.0 1 0 0 1 1 1 1 Ham1 family DUF1232 PF06803.12 gi|330507086|ref|YP_004383514.1| - 2.3e-11 43.3 3.5 3.7e-11 42.6 3.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) TPR_1 PF00515.28 gi|330507087|ref|YP_004383515.1| - 1.7e-38 128.9 4.5 1.1e-08 34.5 0.0 5.5 5 1 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330507087|ref|YP_004383515.1| - 9.2e-36 119.1 4.6 5.4e-09 35.5 0.0 5.4 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330507087|ref|YP_004383515.1| - 7.9e-34 115.1 6.8 4.9e-09 35.7 0.5 5.2 2 2 3 5 5 5 5 TPR repeat TPR_8 PF13181.6 gi|330507087|ref|YP_004383515.1| - 1.6e-27 93.4 1.3 3.1e-06 26.9 0.0 5.3 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330507087|ref|YP_004383515.1| - 4.8e-23 79.8 7.4 1.3e-05 25.3 0.0 5.6 6 0 0 6 6 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330507087|ref|YP_004383515.1| - 2.2e-21 76.2 5.6 8.8e-08 32.7 0.1 4.3 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330507087|ref|YP_004383515.1| - 2.7e-19 68.2 2.5 0.0052 17.5 0.0 5.3 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330507087|ref|YP_004383515.1| - 9.9e-16 58.0 6.0 0.00028 21.3 0.3 4.2 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330507087|ref|YP_004383515.1| - 5.4e-15 55.5 9.4 9.5e-05 22.6 0.2 4.7 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330507087|ref|YP_004383515.1| - 1.7e-13 50.5 0.2 0.001 19.2 0.1 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330507087|ref|YP_004383515.1| - 1.7e-12 46.4 3.1 0.0039 17.1 0.0 4.8 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330507087|ref|YP_004383515.1| - 8.9e-08 31.8 4.1 0.032 14.1 0.1 4.6 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330507087|ref|YP_004383515.1| - 1.6e-06 28.3 1.0 3 8.7 0.0 4.5 4 1 1 5 5 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330507087|ref|YP_004383515.1| - 2.1e-05 24.7 2.3 0.0043 17.2 0.1 3.1 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.6 gi|330507087|ref|YP_004383515.1| - 5.5e-05 22.5 1.3 0.097 11.9 0.2 3.3 1 1 0 2 2 2 2 Tetratricopeptide repeat MIT PF04212.18 gi|330507087|ref|YP_004383515.1| - 0.0012 18.9 2.5 0.96 9.6 0.0 3.6 4 0 0 4 4 4 1 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|330507087|ref|YP_004383515.1| - 0.0012 18.9 1.1 12 6.0 0.0 3.9 2 1 0 3 3 3 0 Domain of Unknown Function (DUF3856) Fis1_TPR_C PF14853.6 gi|330507087|ref|YP_004383515.1| - 0.0046 17.0 1.2 0.37 10.9 0.5 3.2 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.17 gi|330507087|ref|YP_004383515.1| - 0.0083 16.6 0.2 0.66 10.4 0.0 2.5 1 1 1 2 2 2 1 Bacterial transcriptional activator domain DUF5113 PF17140.4 gi|330507087|ref|YP_004383515.1| - 0.029 14.2 0.2 3.4 7.4 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF5113) TPR_3 PF07720.12 gi|330507087|ref|YP_004383515.1| - 0.06 13.4 1.9 1.4 9.0 0.0 3.6 3 1 0 3 3 3 0 Tetratricopeptide repeat NARP1 PF12569.8 gi|330507087|ref|YP_004383515.1| - 0.075 11.9 0.0 16 4.2 0.0 2.7 1 1 1 3 3 3 0 NMDA receptor-regulated protein 1 SHNi-TPR PF10516.9 gi|330507087|ref|YP_004383515.1| - 0.12 11.8 2.5 11 5.6 0.0 3.4 3 0 0 3 3 3 0 SHNi-TPR NADase_NGA PF07461.11 gi|330507088|ref|YP_004383516.1| - 0.14 11.0 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Nicotine adenine dinucleotide glycohydrolase (NADase) SNARE PF05739.19 gi|330507088|ref|YP_004383516.1| - 0.21 11.6 0.9 0.43 10.6 0.9 1.5 1 0 0 1 1 1 0 SNARE domain Peptidase_C1 PF00112.23 gi|330507089|ref|YP_004383517.1| - 3.1e-42 145.1 4.8 4.8e-42 144.5 4.8 1.3 1 0 0 1 1 1 1 Papain family cysteine protease DUF4114 PF13448.6 gi|330507089|ref|YP_004383517.1| - 1.1e-16 61.4 0.5 1e-06 29.4 0.1 3.4 4 0 0 4 4 4 2 Domain of unknown function (DUF4114) DUF4358 PF14270.6 gi|330507089|ref|YP_004383517.1| - 0.027 14.8 0.0 3.2 8.1 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4358) Peptidase_C1_2 PF03051.15 gi|330507089|ref|YP_004383517.1| - 0.13 11.0 2.3 0.98 8.1 0.6 2.1 2 0 0 2 2 2 0 Peptidase C1-like family DUF45 PF01863.17 gi|330507090|ref|YP_004383518.1| - 4.1e-19 69.4 0.9 5.2e-17 62.6 0.2 2.0 1 1 1 2 2 2 2 Protein of unknown function DUF45 SprT-like PF10263.9 gi|330507090|ref|YP_004383518.1| - 0.00077 19.3 0.2 0.0025 17.6 0.1 1.8 2 1 0 2 2 2 1 SprT-like family CxxCxxCC PF03692.15 gi|330507091|ref|YP_004383519.1| - 0.0033 18.1 4.4 0.0044 17.7 4.4 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DJ-1_PfpI PF01965.24 gi|330507092|ref|YP_004383520.1| - 2.8e-49 167.1 0.4 3.9e-49 166.6 0.0 1.4 2 0 0 2 2 2 1 DJ-1/PfpI family DUF2007 PF09413.10 gi|330507092|ref|YP_004383520.1| - 0.0096 16.1 0.1 3.3 7.9 0.0 2.3 2 0 0 2 2 2 2 Putative prokaryotic signal transducing protein GATase_3 PF07685.14 gi|330507092|ref|YP_004383520.1| - 0.015 14.9 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain TPR_1 PF00515.28 gi|330507093|ref|YP_004383521.1| - 2e-44 147.6 12.8 4e-11 42.3 0.2 5.1 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330507093|ref|YP_004383521.1| - 6.6e-37 122.7 10.8 6.4e-09 35.3 0.1 5.1 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330507093|ref|YP_004383521.1| - 1.6e-35 120.5 9.8 6.6e-12 44.9 0.7 4.2 1 1 3 4 4 4 4 TPR repeat TPR_8 PF13181.6 gi|330507093|ref|YP_004383521.1| - 5.8e-33 110.3 3.3 6.4e-08 32.2 0.0 5.2 5 1 0 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330507093|ref|YP_004383521.1| - 8.1e-31 104.2 7.4 5.7e-07 29.5 0.1 4.4 4 1 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330507093|ref|YP_004383521.1| - 3.5e-27 94.8 2.9 6.7e-09 36.3 2.2 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330507093|ref|YP_004383521.1| - 1.9e-21 74.9 3.2 9.3e-05 22.9 0.0 4.9 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330507093|ref|YP_004383521.1| - 1.2e-18 67.2 9.2 1.1e-07 32.1 0.3 3.8 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330507093|ref|YP_004383521.1| - 2.2e-18 64.9 1.9 8.9e-05 22.3 0.0 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330507093|ref|YP_004383521.1| - 8.1e-17 61.5 2.0 1e-07 32.3 0.0 2.8 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330507093|ref|YP_004383521.1| - 4.2e-16 58.9 4.7 2.1e-06 27.8 0.1 2.9 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330507093|ref|YP_004383521.1| - 3.5e-12 46.1 1.1 0.31 11.8 0.0 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330507093|ref|YP_004383521.1| - 3.8e-10 39.3 15.0 0.00044 20.0 0.1 4.4 5 0 0 5 5 5 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|330507093|ref|YP_004383521.1| - 8.4e-08 31.6 0.0 0.0017 17.3 0.0 2.2 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 MIT PF04212.18 gi|330507093|ref|YP_004383521.1| - 6.5e-07 29.3 2.4 0.054 13.6 0.1 4.2 4 0 0 4 4 4 2 MIT (microtubule interacting and transport) domain TPR_4 PF07721.14 gi|330507093|ref|YP_004383521.1| - 1.6e-06 28.2 0.7 1.4 9.8 0.0 5.3 4 2 1 5 5 5 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330507093|ref|YP_004383521.1| - 2.6e-06 27.4 0.1 1.3 9.1 0.0 3.5 4 0 0 4 4 3 2 Fis1 C-terminal tetratricopeptide repeat EST1_DNA_bind PF10373.9 gi|330507093|ref|YP_004383521.1| - 4.4e-06 26.4 1.5 0.18 11.3 0.0 3.1 2 1 1 3 3 3 2 Est1 DNA/RNA binding domain TPR_3 PF07720.12 gi|330507093|ref|YP_004383521.1| - 2e-05 24.4 3.7 0.094 12.7 0.0 4.5 5 0 0 5 5 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330507093|ref|YP_004383521.1| - 0.0002 21.5 0.6 0.034 14.4 0.0 2.8 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF5113 PF17140.4 gi|330507093|ref|YP_004383521.1| - 0.0013 18.6 1.0 1.2 8.9 0.0 3.0 1 1 2 3 3 3 1 Domain of unknown function (DUF5113) RPN7 PF10602.9 gi|330507093|ref|YP_004383521.1| - 0.0013 18.5 1.5 3 7.5 0.0 3.7 2 2 2 4 4 4 1 26S proteasome subunit RPN7 TOM20_plant PF06552.12 gi|330507093|ref|YP_004383521.1| - 0.0041 16.9 0.3 1.7 8.3 0.0 3.1 2 1 1 3 3 3 1 Plant specific mitochondrial import receptor subunit TOM20 PPR PF01535.20 gi|330507093|ref|YP_004383521.1| - 0.0042 17.3 0.0 25 5.4 0.0 3.8 3 0 0 3 3 3 0 PPR repeat BTAD PF03704.17 gi|330507093|ref|YP_004383521.1| - 0.0072 16.8 0.3 5.9 7.3 0.0 2.5 1 1 1 2 2 2 2 Bacterial transcriptional activator domain BPS PF08947.10 gi|330507093|ref|YP_004383521.1| - 0.034 14.0 0.1 7.7 6.4 0.0 3.6 2 2 2 4 4 4 0 BPS (Between PH and SH2) Wzy_C_2 PF11846.8 gi|330507093|ref|YP_004383521.1| - 0.14 12.0 0.1 9.6 6.1 0.0 2.3 1 1 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal NSF PF02071.20 gi|330507093|ref|YP_004383521.1| - 0.16 12.8 3.2 58 5.2 0.1 4.2 4 0 0 4 4 3 0 Aromatic-di-Alanine (AdAR) repeat DUF111 PF01969.17 gi|330507095|ref|YP_004383523.1| - 2.7e-80 270.3 0.0 3.1e-80 270.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 DDE_Tnp_1 PF01609.21 gi|330507096|ref|YP_004383524.1| - 2.9e-14 53.2 0.3 1.2e-12 47.9 0.1 2.8 2 1 0 2 2 2 1 Transposase DDE domain DUF3826 PF12875.7 gi|330507096|ref|YP_004383524.1| - 0.15 12.2 1.7 0.86 9.7 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3826) Peripla_BP_2 PF01497.18 gi|330507097|ref|YP_004383525.1| - 1e-11 44.8 0.0 1.6e-11 44.3 0.0 1.2 1 1 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|330507099|ref|YP_004383527.1| - 1.9e-19 70.2 0.0 3.3e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_25 PF13649.6 gi|330507100|ref|YP_004383528.1| - 3.2e-10 40.6 0.0 6.7e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507100|ref|YP_004383528.1| - 1.6e-07 31.9 0.0 3e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330507100|ref|YP_004383528.1| - 1.2e-06 28.5 0.0 1.7e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330507100|ref|YP_004383528.1| - 2.2e-06 28.3 0.0 3.8e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|330507100|ref|YP_004383528.1| - 2.1e-05 24.1 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.20 gi|330507100|ref|YP_004383528.1| - 5.9e-05 22.3 0.0 8.8e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 gi|330507100|ref|YP_004383528.1| - 7.7e-05 22.5 0.0 0.00018 21.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|330507100|ref|YP_004383528.1| - 0.00037 20.1 0.0 0.00055 19.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|330507100|ref|YP_004383528.1| - 0.00053 19.7 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 GidB PF02527.15 gi|330507100|ref|YP_004383528.1| - 0.00091 18.6 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PCMT PF01135.19 gi|330507100|ref|YP_004383528.1| - 0.0021 17.9 0.0 0.0032 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|330507100|ref|YP_004383528.1| - 0.0022 17.3 0.1 0.0063 15.9 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|330507100|ref|YP_004383528.1| - 0.003 16.7 0.0 0.0058 15.8 0.0 1.5 2 0 0 2 2 2 1 DREV methyltransferase Met_10 PF02475.16 gi|330507100|ref|YP_004383528.1| - 0.011 15.5 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein SAM_MT PF04445.13 gi|330507100|ref|YP_004383528.1| - 0.017 14.6 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Methyltransf_PK PF05891.12 gi|330507100|ref|YP_004383528.1| - 0.032 13.8 0.0 0.067 12.7 0.0 1.5 1 1 0 1 1 1 0 AdoMet dependent proline di-methyltransferase PrmA PF06325.13 gi|330507100|ref|YP_004383528.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|330507100|ref|YP_004383528.1| - 0.13 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Peripla_BP_2 PF01497.18 gi|330507101|ref|YP_004383529.1| - 1.8e-21 76.8 0.0 2.7e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|330507102|ref|YP_004383530.1| - 4.7e-22 78.7 0.1 1e-21 77.6 0.1 1.5 1 1 0 1 1 1 1 Periplasmic binding protein VbhA PF18495.1 gi|330507102|ref|YP_004383530.1| - 0.083 12.8 0.1 0.21 11.5 0.1 1.6 1 0 0 1 1 1 0 Antitoxin VbhA EF-hand_5 PF13202.6 gi|330507102|ref|YP_004383530.1| - 0.22 11.1 4.3 0.33 10.5 0.6 2.5 2 0 0 2 2 2 0 EF hand EF-hand_1 PF00036.32 gi|330507102|ref|YP_004383530.1| - 0.55 9.9 2.3 1.5 8.5 0.4 2.5 2 0 0 2 2 2 0 EF hand ABC_tran PF00005.27 gi|330507103|ref|YP_004383531.1| - 8.3e-30 104.1 0.0 1.2e-29 103.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330507103|ref|YP_004383531.1| - 6.8e-14 52.4 0.0 9.5e-09 35.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330507103|ref|YP_004383531.1| - 1.4e-08 34.5 0.0 9.7e-08 31.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|330507103|ref|YP_004383531.1| - 0.00047 20.6 0.0 0.0022 18.4 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|330507103|ref|YP_004383531.1| - 0.00068 20.2 0.4 0.0012 19.4 0.4 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|330507103|ref|YP_004383531.1| - 0.0017 18.0 0.0 0.69 9.5 0.0 2.6 3 0 0 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|330507103|ref|YP_004383531.1| - 0.021 14.9 0.0 0.43 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|330507103|ref|YP_004383531.1| - 0.04 14.3 0.0 0.056 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|330507103|ref|YP_004383531.1| - 0.051 13.3 0.0 2.7 7.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain ATPase_2 PF01637.18 gi|330507103|ref|YP_004383531.1| - 0.057 13.3 0.0 0.094 12.6 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|330507103|ref|YP_004383531.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|330507103|ref|YP_004383531.1| - 0.14 12.4 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|330507104|ref|YP_004383532.1| - 2.1e-93 312.7 32.0 2.7e-93 312.4 32.0 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|330507104|ref|YP_004383532.1| - 1.1e-06 28.3 22.6 1.1e-06 28.3 22.6 2.4 2 1 0 2 2 2 1 ABC 3 transport family Potyvirid-P3 PF13608.6 gi|330507104|ref|YP_004383532.1| - 0.19 10.8 0.7 0.27 10.2 0.7 1.2 1 0 0 1 1 1 0 Protein P3 of Potyviral polyprotein Gly-zipper_OmpA PF13436.6 gi|330507104|ref|YP_004383532.1| - 3.1 7.7 9.7 50 3.8 9.7 2.5 1 1 0 1 1 1 0 Glycine-zipper domain SBP_bac_5 PF00496.22 gi|330507105|ref|YP_004383533.1| - 7.5e-76 255.5 0.2 8.9e-76 255.3 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TrmO PF01980.16 gi|330507106|ref|YP_004383534.1| - 1.7e-24 86.3 0.0 3.2e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 tRNA-methyltransferase O Methyltransf_31 PF13847.6 gi|330507106|ref|YP_004383534.1| - 3.2e-14 53.0 0.0 4.7e-14 52.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330507106|ref|YP_004383534.1| - 1.1e-12 48.5 0.0 1.9e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507106|ref|YP_004383534.1| - 8.7e-12 45.5 0.0 1.5e-11 44.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330507106|ref|YP_004383534.1| - 3.1e-11 43.1 0.0 5.1e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|330507106|ref|YP_004383534.1| - 1.1e-05 26.0 0.0 1.9e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|330507106|ref|YP_004383534.1| - 2e-05 24.5 0.0 3.4e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase TehB PF03848.14 gi|330507106|ref|YP_004383534.1| - 3e-05 23.5 0.0 4.9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|330507106|ref|YP_004383534.1| - 0.025 13.9 0.0 0.04 13.2 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|330507106|ref|YP_004383534.1| - 0.027 14.0 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 gi|330507106|ref|YP_004383534.1| - 0.036 13.8 0.0 0.1 12.3 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|330507106|ref|YP_004383534.1| - 0.16 12.1 0.0 0.39 10.8 0.0 1.7 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltr_RsmB-F PF01189.17 gi|330507106|ref|YP_004383534.1| - 0.18 11.5 0.0 0.35 10.5 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DOT1 PF08123.13 gi|330507106|ref|YP_004383534.1| - 0.2 11.2 0.0 0.35 10.4 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 FmdE PF02663.14 gi|330507107|ref|YP_004383535.1| - 2.4e-31 108.5 0.0 3.5e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|330507107|ref|YP_004383535.1| - 0.028 14.3 2.2 0.15 12.0 2.2 2.1 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger PadR PF03551.14 gi|330507108|ref|YP_004383536.1| - 5.7e-15 55.0 0.1 1.1e-14 54.1 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family PaaX PF07848.12 gi|330507108|ref|YP_004383536.1| - 0.0074 16.5 0.1 0.085 13.1 0.0 2.4 2 0 0 2 2 2 1 PaaX-like protein DUF4364 PF14277.6 gi|330507108|ref|YP_004383536.1| - 0.009 15.8 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF3349 PF11829.8 gi|330507108|ref|YP_004383536.1| - 0.013 16.3 0.9 3.8 8.4 1.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) Penicillinase_R PF03965.16 gi|330507108|ref|YP_004383536.1| - 0.018 15.4 0.0 0.036 14.4 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor SgrR_N PF12793.7 gi|330507108|ref|YP_004383536.1| - 0.036 14.3 0.0 0.066 13.4 0.0 1.5 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_45 PF14947.6 gi|330507108|ref|YP_004383536.1| - 0.055 13.5 0.1 0.15 12.1 0.1 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DDE_3 PF13358.6 gi|330507110|ref|YP_004383538.1| - 1.1e-31 109.6 0.0 1.5e-31 109.1 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease rve_2 PF13333.6 gi|330507110|ref|YP_004383538.1| - 0.063 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain rve_3 PF13683.6 gi|330507110|ref|YP_004383538.1| - 0.11 12.3 0.3 2.3 8.1 0.0 2.5 3 0 0 3 3 3 0 Integrase core domain SBP_bac_5 PF00496.22 gi|330507111|ref|YP_004383539.1| - 2.4e-69 234.1 1.7 3e-69 233.8 1.7 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MatE PF01554.18 gi|330507112|ref|YP_004383540.1| - 3.6e-43 147.0 41.8 1.6e-26 92.9 14.4 2.6 3 0 0 3 3 3 2 MatE MurJ PF03023.14 gi|330507112|ref|YP_004383540.1| - 4.5e-06 25.5 17.8 4.5e-06 25.5 17.8 2.8 1 1 1 2 2 2 1 Lipid II flippase MurJ Polysacc_synt_C PF14667.6 gi|330507112|ref|YP_004383540.1| - 4.3e-05 23.6 23.5 4.3e-05 23.6 23.5 4.7 2 2 3 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Holin_SPP1 PF04688.13 gi|330507112|ref|YP_004383540.1| - 0.12 12.6 0.6 0.57 10.4 0.2 2.4 1 1 1 2 2 2 0 SPP1 phage holin Methyltransf_31 PF13847.6 gi|330507113|ref|YP_004383541.1| - 5.5e-17 62.0 0.0 6.5e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507113|ref|YP_004383541.1| - 1.5e-16 60.8 0.0 5.1e-16 59.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330507113|ref|YP_004383541.1| - 9e-16 58.4 0.0 1.4e-15 57.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330507113|ref|YP_004383541.1| - 4.9e-14 52.2 0.0 6.9e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|330507113|ref|YP_004383541.1| - 6.5e-07 30.0 0.0 9e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|330507113|ref|YP_004383541.1| - 3.4e-06 27.1 0.0 3e-05 24.0 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_4 PF02390.17 gi|330507113|ref|YP_004383541.1| - 4.6e-05 22.9 0.0 0.00022 20.8 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.19 gi|330507113|ref|YP_004383541.1| - 0.00013 21.8 0.0 0.00028 20.7 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|330507113|ref|YP_004383541.1| - 0.00018 21.2 0.0 0.0013 18.5 0.0 1.9 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_2 PF00891.18 gi|330507113|ref|YP_004383541.1| - 0.00051 19.4 0.0 0.00081 18.7 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase domain TehB PF03848.14 gi|330507113|ref|YP_004383541.1| - 0.00078 18.9 0.0 0.00099 18.6 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Fibrillarin PF01269.17 gi|330507113|ref|YP_004383541.1| - 0.0018 17.4 0.0 0.0023 17.1 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin DUF938 PF06080.12 gi|330507113|ref|YP_004383541.1| - 0.0024 17.7 0.0 0.0035 17.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_23 PF13489.6 gi|330507113|ref|YP_004383541.1| - 0.0031 17.4 0.0 0.0077 16.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|330507113|ref|YP_004383541.1| - 0.01 15.2 0.0 0.022 14.0 0.0 1.5 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|330507113|ref|YP_004383541.1| - 0.021 14.2 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|330507113|ref|YP_004383541.1| - 0.033 13.8 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DOT1 PF08123.13 gi|330507113|ref|YP_004383541.1| - 0.037 13.6 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 FtsJ PF01728.19 gi|330507113|ref|YP_004383541.1| - 0.04 14.0 0.0 0.061 13.4 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase PadR PF03551.14 gi|330507114|ref|YP_004383542.1| - 1.6e-14 53.6 0.2 2.9e-14 52.8 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|330507114|ref|YP_004383542.1| - 0.012 15.4 0.2 0.016 14.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) PaaX PF07848.12 gi|330507114|ref|YP_004383542.1| - 0.032 14.4 0.0 0.074 13.3 0.0 1.7 1 1 0 1 1 1 0 PaaX-like protein Tautomerase PF01361.21 gi|330507114|ref|YP_004383542.1| - 0.047 13.6 0.1 0.2 11.6 0.2 2.0 3 0 0 3 3 3 0 Tautomerase enzyme DUF3349 PF11829.8 gi|330507114|ref|YP_004383542.1| - 0.095 13.5 0.1 19 6.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) Methyltransf_2 PF00891.18 gi|330507115|ref|YP_004383543.1| - 4.5e-15 55.5 0.0 6.3e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|330507115|ref|YP_004383543.1| - 1.2e-11 44.4 0.0 2e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_12 PF08242.12 gi|330507115|ref|YP_004383543.1| - 1.2e-06 29.2 0.0 2.3e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330507115|ref|YP_004383543.1| - 2.4e-06 28.2 0.0 4.9e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507115|ref|YP_004383543.1| - 2.3e-05 24.9 0.0 4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330507115|ref|YP_004383543.1| - 5e-05 23.1 0.0 8.3e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330507115|ref|YP_004383543.1| - 6.1e-05 22.9 0.0 0.0001 22.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|330507115|ref|YP_004383543.1| - 0.0022 17.8 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase CMAS PF02353.20 gi|330507115|ref|YP_004383543.1| - 0.0073 15.6 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|330507115|ref|YP_004383543.1| - 0.0092 15.5 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Peripla_BP_2 PF01497.18 gi|330507116|ref|YP_004383544.1| - 1.1e-22 80.7 0.0 1.5e-22 80.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein CbiJ PF02571.14 gi|330507116|ref|YP_004383544.1| - 0.018 14.5 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK ParE_toxin PF05016.15 gi|330507118|ref|YP_004383546.1| - 1.1e-09 38.8 0.2 1.7e-09 38.1 0.2 1.3 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|330507118|ref|YP_004383546.1| - 2.7e-06 27.2 0.1 4.4e-06 26.6 0.1 1.4 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system YafQ_toxin PF15738.5 gi|330507118|ref|YP_004383546.1| - 0.00079 19.7 0.0 0.0014 18.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ Ist1 PF03398.14 gi|330507118|ref|YP_004383546.1| - 0.086 12.8 0.3 0.14 12.1 0.1 1.4 2 0 0 2 2 2 0 Regulator of Vps4 activity in the MVB pathway Pyridoxal_deC PF00282.19 gi|330507119|ref|YP_004383547.1| - 7.6e-66 222.3 0.0 9.7e-66 222.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.21 gi|330507119|ref|YP_004383547.1| - 9.7e-10 38.2 0.0 1.2e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|330507119|ref|YP_004383547.1| - 1.6e-07 30.7 0.0 2.2e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|330507119|ref|YP_004383547.1| - 1.4e-05 24.5 0.0 2.5e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II SepSecS PF05889.13 gi|330507119|ref|YP_004383547.1| - 2.2e-05 23.3 0.0 6.5e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS DegT_DnrJ_EryC1 PF01041.17 gi|330507119|ref|YP_004383547.1| - 0.028 13.7 0.0 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family RibD_C PF01872.17 gi|330507120|ref|YP_004383548.1| - 9.5e-17 61.5 0.0 2e-16 60.4 0.0 1.5 1 1 0 1 1 1 1 RibD C-terminal domain SpoIIE PF07228.12 gi|330507122|ref|YP_004383550.1| - 2e-34 119.2 0.0 3.1e-34 118.6 0.0 1.3 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) dCache_1 PF02743.18 gi|330507122|ref|YP_004383550.1| - 1.6e-19 70.7 0.0 3.1e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 gi|330507122|ref|YP_004383550.1| - 6.3e-06 26.5 0.2 1.7e-05 25.1 0.2 1.8 1 0 0 1 1 1 1 HAMP domain DUF948 PF06103.11 gi|330507122|ref|YP_004383550.1| - 0.25 11.6 0.6 4.7 7.5 0.2 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) HicB_lk_antitox PF15919.5 gi|330507123|ref|YP_004383551.1| - 1.9e-10 40.9 0.0 2e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|330507123|ref|YP_004383551.1| - 0.00019 21.3 0.0 0.00021 21.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) DUF4119 PF13494.6 gi|330507123|ref|YP_004383551.1| - 0.18 12.0 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF4119) DUF4277 PF14104.6 gi|330507124|ref|YP_004383552.1| - 1.9e-41 140.8 0.0 3.7e-41 139.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|330507124|ref|YP_004383552.1| - 0.00045 19.9 0.0 0.00063 19.4 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF5395 PF17373.2 gi|330507124|ref|YP_004383552.1| - 0.11 13.1 0.1 13 6.5 0.0 2.9 2 1 1 3 3 3 0 Family of unknown function (DUF5395) HTH_Tnp_1 PF01527.20 gi|330507125|ref|YP_004383553.1| - 9.9e-11 41.8 0.1 1.6e-10 41.1 0.0 1.5 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.6 gi|330507125|ref|YP_004383553.1| - 0.002 17.8 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|330507125|ref|YP_004383553.1| - 0.0046 17.0 0.0 0.0099 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PKcGMP_CC PF16808.5 gi|330507125|ref|YP_004383553.1| - 0.033 14.1 0.3 0.074 12.9 0.3 1.6 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4733 PF15878.5 gi|330507125|ref|YP_004383553.1| - 0.062 13.8 0.1 0.13 12.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4733) rve PF00665.26 gi|330507126|ref|YP_004383554.1| - 1.4e-25 89.8 0.0 2.2e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 gi|330507126|ref|YP_004383554.1| - 2.7e-19 69.1 0.3 1.9e-18 66.3 0.3 2.1 2 0 0 2 2 2 1 HTH-like domain rve_3 PF13683.6 gi|330507126|ref|YP_004383554.1| - 3.8e-16 58.6 0.1 9.1e-16 57.4 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|330507126|ref|YP_004383554.1| - 4.7e-08 33.1 3.6 9.4e-08 32.1 2.4 2.1 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 gi|330507126|ref|YP_004383554.1| - 0.00016 21.9 0.3 0.00028 21.1 0.3 1.4 1 0 0 1 1 1 1 DDE domain GP3_package PF16677.5 gi|330507126|ref|YP_004383554.1| - 0.027 14.6 0.1 12 6.1 0.0 2.4 2 0 0 2 2 2 0 DNA-packaging protein gp3 HTH_Tnp_Tc3_2 PF01498.18 gi|330507126|ref|YP_004383554.1| - 0.041 14.1 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_Tnp_1_2 PF13022.6 gi|330507126|ref|YP_004383554.1| - 0.049 13.8 0.1 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase Transposase_20 PF02371.16 gi|330507127|ref|YP_004383555.1| - 7.5e-25 87.1 0.0 1.2e-24 86.4 0.0 1.3 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 gi|330507128|ref|YP_004383556.1| - 6.1e-25 87.3 0.0 1.1e-24 86.6 0.0 1.4 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330507128|ref|YP_004383556.1| - 1.4e-13 51.0 0.0 3.3e-13 49.8 0.0 1.7 1 0 0 1 1 1 1 Transposase DUF4164 PF13747.6 gi|330507128|ref|YP_004383556.1| - 0.51 10.6 3.6 4 7.8 0.1 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) DDE_Tnp_1 PF01609.21 gi|330507129|ref|YP_004383557.1| - 1.8e-05 24.5 0.0 2.5e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain rve PF00665.26 gi|330507130|ref|YP_004383558.1| - 1.4e-25 89.8 0.0 2.2e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 gi|330507130|ref|YP_004383558.1| - 2.7e-19 69.1 0.3 1.9e-18 66.3 0.3 2.1 2 0 0 2 2 2 1 HTH-like domain rve_3 PF13683.6 gi|330507130|ref|YP_004383558.1| - 3.8e-16 58.6 0.1 9.1e-16 57.4 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|330507130|ref|YP_004383558.1| - 4.7e-08 33.1 3.6 9.4e-08 32.1 2.4 2.1 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 gi|330507130|ref|YP_004383558.1| - 0.00016 21.9 0.3 0.00028 21.1 0.3 1.4 1 0 0 1 1 1 1 DDE domain GP3_package PF16677.5 gi|330507130|ref|YP_004383558.1| - 0.027 14.6 0.1 12 6.1 0.0 2.4 2 0 0 2 2 2 0 DNA-packaging protein gp3 HTH_Tnp_Tc3_2 PF01498.18 gi|330507130|ref|YP_004383558.1| - 0.041 14.1 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_Tnp_1_2 PF13022.6 gi|330507130|ref|YP_004383558.1| - 0.049 13.8 0.1 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_Tnp_1 PF01527.20 gi|330507131|ref|YP_004383559.1| - 9.9e-11 41.8 0.1 1.6e-10 41.1 0.0 1.5 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.6 gi|330507131|ref|YP_004383559.1| - 0.002 17.8 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|330507131|ref|YP_004383559.1| - 0.0046 17.0 0.0 0.0099 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PKcGMP_CC PF16808.5 gi|330507131|ref|YP_004383559.1| - 0.033 14.1 0.3 0.074 12.9 0.3 1.6 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4733 PF15878.5 gi|330507131|ref|YP_004383559.1| - 0.062 13.8 0.1 0.13 12.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4733) DEDD_Tnp_IS110 PF01548.17 gi|330507132|ref|YP_004383560.1| - 3.8e-22 78.8 0.0 4.7e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 Transposase Transposase_mut PF00872.18 gi|330507133|ref|YP_004383561.1| - 1.6e-16 60.1 0.0 1.7e-16 60.0 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family DUF1614 PF07758.11 gi|330507134|ref|YP_004383562.1| - 2.1e-47 161.3 10.2 2.5e-47 161.0 10.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) Transposase_20 PF02371.16 gi|330507135|ref|YP_004383563.1| - 2.7e-25 88.5 0.1 5e-25 87.6 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330507135|ref|YP_004383563.1| - 3e-20 72.7 0.0 5.9e-20 71.7 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE_Tnp_1 PF01609.21 gi|330507136|ref|YP_004383564.1| - 1.9e-25 89.8 0.0 3.3e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|330507136|ref|YP_004383564.1| - 0.014 14.7 0.3 0.021 14.1 0.3 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|330507136|ref|YP_004383564.1| - 0.019 13.3 0.0 0.03 12.6 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 Tudor_FRX1 PF18336.1 gi|330507136|ref|YP_004383564.1| - 0.075 13.0 1.0 1.4 8.9 0.1 2.8 3 0 0 3 3 3 0 Fragile X mental retardation Tudor domain OrfB_Zn_ribbon PF07282.11 gi|330507138|ref|YP_004383566.1| - 3e-22 78.3 0.1 8e-22 76.9 0.1 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330507138|ref|YP_004383566.1| - 5.2e-22 78.3 0.0 1.1e-21 77.2 0.0 1.5 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|330507138|ref|YP_004383566.1| - 7.8e-09 34.9 1.0 2.1e-08 33.5 1.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|330507138|ref|YP_004383566.1| - 0.0015 18.5 0.3 0.0026 17.8 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|330507138|ref|YP_004383566.1| - 0.057 12.9 0.5 0.45 10.1 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|330507138|ref|YP_004383566.1| - 0.12 12.1 0.8 0.2 11.4 0.8 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain C1_1 PF00130.22 gi|330507138|ref|YP_004383566.1| - 0.17 11.8 0.3 0.17 11.8 0.3 2.0 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.6 gi|330507138|ref|YP_004383566.1| - 0.23 10.9 0.9 1.2 8.6 0.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain RecR PF02132.15 gi|330507138|ref|YP_004383566.1| - 0.41 10.2 4.9 5.7 6.6 0.1 2.8 2 1 1 3 3 3 0 RecR protein Eco57I PF07669.11 gi|330507139|ref|YP_004383567.1| - 2.5e-14 53.7 0.3 6.7e-14 52.3 0.3 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.16 gi|330507139|ref|YP_004383567.1| - 2.7e-12 46.6 0.1 1.3e-06 27.9 0.0 3.3 2 2 0 2 2 2 2 N-6 DNA Methylase TaqI_C PF12950.7 gi|330507139|ref|YP_004383567.1| - 3.9e-11 43.1 0.0 1e-10 41.7 0.0 1.7 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain HSDR_N PF04313.14 gi|330507139|ref|YP_004383567.1| - 2e-08 34.4 0.0 1.1e-05 25.4 0.0 2.5 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.18 gi|330507139|ref|YP_004383567.1| - 0.00022 20.9 0.0 0.072 12.8 0.0 2.9 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 HSDR_N_2 PF13588.6 gi|330507139|ref|YP_004383567.1| - 0.00075 19.5 0.0 0.0067 16.4 0.0 2.6 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) Methyltransf_31 PF13847.6 gi|330507139|ref|YP_004383567.1| - 0.17 11.7 0.0 2.2 8.1 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain DDE_Tnp_IS66 PF03050.14 gi|330507140|ref|YP_004383568.1| - 6e-48 163.7 0.0 9.7e-48 163.1 0.0 1.3 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.7 gi|330507140|ref|YP_004383568.1| - 3.2e-06 27.5 4.6 1.1e-05 25.7 4.6 2.0 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 Med1 PF10744.9 gi|330507140|ref|YP_004383568.1| - 0.00025 20.2 0.0 0.00033 19.8 0.0 1.1 1 0 0 1 1 1 1 Mediator of RNA polymerase II transcription subunit 1 DDE_Tnp_IS240 PF13610.6 gi|330507140|ref|YP_004383568.1| - 0.0016 18.7 0.0 0.0035 17.6 0.0 1.7 1 0 0 1 1 1 1 DDE domain DZR PF12773.7 gi|330507140|ref|YP_004383568.1| - 0.0021 18.0 0.6 0.0051 16.8 0.6 1.6 1 1 0 1 1 1 1 Double zinc ribbon DivIC PF04977.15 gi|330507140|ref|YP_004383568.1| - 0.26 11.1 2.6 0.72 9.7 2.6 1.7 1 0 0 1 1 1 0 Septum formation initiator ZapB PF06005.12 gi|330507140|ref|YP_004383568.1| - 0.4 11.1 5.8 0.2 12.1 2.7 2.1 2 1 0 2 2 2 0 Cell division protein ZapB MCC-bdg_PDZ PF10506.9 gi|330507140|ref|YP_004383568.1| - 0.74 9.9 4.8 0.31 11.1 2.1 1.8 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome zf-ribbon_3 PF13248.6 gi|330507140|ref|YP_004383568.1| - 1.5 8.3 6.0 5.5 6.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HALZ PF02183.18 gi|330507140|ref|YP_004383568.1| - 2.2 8.6 6.6 3.2 8.0 3.3 2.5 2 0 0 2 2 2 0 Homeobox associated leucine zipper zinc_ribbon_2 PF13240.6 gi|330507140|ref|YP_004383568.1| - 5.6 6.8 7.8 2.7 7.8 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF2721 PF11026.8 gi|330507141|ref|YP_004383569.1| - 0.14 12.1 0.2 0.16 11.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) RNA_capsid PF03035.14 gi|330507141|ref|YP_004383569.1| - 0.18 11.8 0.1 0.2 11.6 0.1 1.0 1 0 0 1 1 1 0 Calicivirus putative RNA polymerase/capsid protein Lactamase_B_2 PF12706.7 gi|330507142|ref|YP_004383570.1| - 1.1e-07 31.6 0.0 1.6e-05 24.5 0.0 2.5 2 0 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|330507142|ref|YP_004383570.1| - 6.8e-06 25.9 0.0 1.8e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|330507142|ref|YP_004383570.1| - 1.2e-05 25.4 0.0 0.00013 22.0 0.0 2.4 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|330507142|ref|YP_004383570.1| - 0.0031 17.4 0.0 0.022 14.6 0.0 2.3 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Mrr_cat PF04471.12 gi|330507143|ref|YP_004383571.1| - 4.5e-15 55.7 0.0 6.1e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|330507143|ref|YP_004383571.1| - 1.2e-05 25.2 0.0 1.5e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Restriction endonuclease ParE_toxin PF05016.15 gi|330507145|ref|YP_004383573.1| - 6.2e-08 33.2 0.4 7e-08 33.0 0.4 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|330507145|ref|YP_004383573.1| - 0.0034 17.3 0.1 0.0056 16.6 0.1 1.5 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system YafQ_toxin PF15738.5 gi|330507145|ref|YP_004383573.1| - 0.061 13.7 0.4 0.1 12.9 0.4 1.4 1 1 0 1 1 1 0 Bacterial toxin of type II toxin-antitoxin system, YafQ Pea-VEAacid PF08111.11 gi|330507145|ref|YP_004383573.1| - 0.11 12.8 0.1 0.25 11.7 0.1 1.6 1 0 0 1 1 1 0 Pea-VEAacid family DUF772 PF05598.11 gi|330507149|ref|YP_004383577.1| - 6.3e-20 71.0 0.0 1.2e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|330507149|ref|YP_004383577.1| - 2e-15 57.0 5.4 6.9e-15 55.3 5.4 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|330507149|ref|YP_004383577.1| - 2.3e-05 24.1 0.4 0.0001 22.0 0.4 2.0 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.6 gi|330507149|ref|YP_004383577.1| - 2.6e-05 24.4 0.4 4.5e-05 23.7 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain EnY2 PF10163.9 gi|330507149|ref|YP_004383577.1| - 0.044 14.2 0.1 0.1 13.0 0.1 1.6 1 0 0 1 1 1 0 Transcription factor e(y)2 Transposase_mut PF00872.18 gi|330507150|ref|YP_004383578.1| - 5.5e-20 71.6 0.5 6.2e-20 71.4 0.5 1.0 1 0 0 1 1 1 1 Transposase, Mutator family Transposase_mut PF00872.18 gi|330507151|ref|YP_004383579.1| - 4.1e-77 259.6 0.1 5.1e-77 259.3 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|330507151|ref|YP_004383579.1| - 2.9e-06 27.6 0.0 4.7e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 MULE transposase domain DUF5499 PF17603.2 gi|330507151|ref|YP_004383579.1| - 0.015 15.8 0.2 2.2 8.9 0.0 3.0 2 1 0 3 3 3 0 Family of unknown function (DUF5499) DUF772 PF05598.11 gi|330507152|ref|YP_004383580.1| - 2.6e-21 75.4 0.0 4.8e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|330507152|ref|YP_004383580.1| - 1.5e-15 57.4 4.6 5e-15 55.7 4.6 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|330507152|ref|YP_004383580.1| - 3e-05 23.8 0.3 0.00012 21.8 0.3 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.6 gi|330507152|ref|YP_004383580.1| - 3.1e-05 24.2 0.4 5.4e-05 23.4 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain EnY2 PF10163.9 gi|330507152|ref|YP_004383580.1| - 0.052 13.9 0.1 0.12 12.8 0.1 1.6 1 0 0 1 1 1 0 Transcription factor e(y)2 RHH_8 PF17723.1 gi|330507153|ref|YP_004383581.1| - 0.00012 22.2 0.0 0.00016 21.8 0.0 1.3 1 1 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family DDE_Tnp_ISAZ013 PF07592.11 gi|330507153|ref|YP_004383581.1| - 0.036 13.1 0.0 0.04 12.9 0.0 1.1 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain RHH_1 PF01402.21 gi|330507153|ref|YP_004383581.1| - 0.043 13.8 0.4 0.094 12.7 0.4 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|330507154|ref|YP_004383582.1| - 1.3e-05 25.3 0.0 1.5e-05 25.1 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|330507155|ref|YP_004383583.1| - 3.2e-19 68.7 0.2 3.9e-19 68.4 0.2 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, DUF3950 PF13132.6 gi|330507156|ref|YP_004383584.1| - 0.026 14.2 0.2 1.1 9.0 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3950) RNase_Zc3h12a_2 PF14626.6 gi|330507160|ref|YP_004383588.1| - 0.17 12.1 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain DDE_Tnp_1 PF01609.21 gi|330507161|ref|YP_004383589.1| - 2.8e-15 56.6 0.3 7.3e-14 51.9 0.1 2.7 2 1 0 2 2 2 1 Transposase DDE domain hGDE_central PF14702.6 gi|330507161|ref|YP_004383589.1| - 0.043 13.5 0.2 0.28 10.8 0.0 2.1 2 0 0 2 2 2 0 Central domain of human glycogen debranching enzyme OrfB_IS605 PF01385.19 gi|330507163|ref|YP_004383591.1| - 1.1e-22 80.6 0.0 2.2e-22 79.5 0.0 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|330507163|ref|YP_004383591.1| - 7.9e-22 77.0 0.1 3.1e-21 75.0 0.1 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|330507163|ref|YP_004383591.1| - 2.5e-19 68.5 2.3 5.3e-19 67.4 2.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|330507163|ref|YP_004383591.1| - 0.011 15.8 0.2 0.02 14.9 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon RecR PF02132.15 gi|330507163|ref|YP_004383591.1| - 0.66 9.6 4.4 16 5.1 0.1 3.1 2 1 1 3 3 3 0 RecR protein CPSase_L_D2 PF02786.17 gi|330507164|ref|YP_004383592.1| - 7.4e-105 349.1 0.3 7.8e-71 237.9 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|330507164|ref|YP_004383592.1| - 1.2e-40 138.6 0.0 2.9e-40 137.4 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|330507164|ref|YP_004383592.1| - 5.3e-19 68.2 2.2 1.5e-17 63.6 0.1 3.8 4 0 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.22 gi|330507164|ref|YP_004383592.1| - 1.2e-15 57.5 0.0 1.9e-06 27.6 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|330507164|ref|YP_004383592.1| - 2.1e-14 53.4 0.1 6.2e-06 26.0 0.0 2.9 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|330507164|ref|YP_004383592.1| - 8.7e-13 48.3 0.0 2.9e-06 27.0 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|330507164|ref|YP_004383592.1| - 3.5e-11 43.4 0.2 0.00016 21.7 0.0 2.7 2 1 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|330507164|ref|YP_004383592.1| - 5.9e-07 29.5 0.0 0.031 14.0 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|330507164|ref|YP_004383592.1| - 3.7e-05 23.3 0.0 0.26 10.7 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.11 gi|330507164|ref|YP_004383592.1| - 0.00024 20.8 0.0 0.36 10.4 0.0 3.5 3 1 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.10 gi|330507164|ref|YP_004383592.1| - 0.0011 18.6 0.0 1.9 8.0 0.0 2.8 2 0 0 2 2 2 2 ATP-grasp domain HTH_23 PF13384.6 gi|330507164|ref|YP_004383592.1| - 0.013 15.3 0.0 1 9.3 0.0 3.1 2 0 0 2 2 2 0 Homeodomain-like domain Epimerase PF01370.21 gi|330507164|ref|YP_004383592.1| - 0.1 12.0 0.0 0.56 9.6 0.0 2.1 1 1 1 2 2 2 0 NAD dependent epimerase/dehydratase family HHH PF00633.23 gi|330507164|ref|YP_004383592.1| - 0.12 12.3 0.0 7.8 6.6 0.0 3.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif GATase PF00117.28 gi|330507165|ref|YP_004383593.1| - 1.8e-41 142.0 0.0 2.8e-41 141.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CPSase_sm_chain PF00988.22 gi|330507165|ref|YP_004383593.1| - 2.5e-37 127.5 0.0 3.5e-37 127.1 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain Peptidase_C26 PF07722.13 gi|330507165|ref|YP_004383593.1| - 2.1e-10 40.8 0.1 2.1e-07 30.9 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|330507165|ref|YP_004383593.1| - 0.035 13.9 0.0 0.065 13.0 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family Peripla_BP_6 PF13458.6 gi|330507165|ref|YP_004383593.1| - 0.17 11.5 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein DUF3467 PF11950.8 gi|330507166|ref|YP_004383594.1| - 2.4e-17 62.9 0.0 2.8e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) DUF3211 PF11485.8 gi|330507166|ref|YP_004383594.1| - 0.061 13.6 0.1 0.073 13.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3211) BRK PF07533.16 gi|330507166|ref|YP_004383594.1| - 0.33 10.6 2.2 2.3 7.9 0.1 2.5 3 0 0 3 3 3 0 BRK domain TPR_1 PF00515.28 gi|330507167|ref|YP_004383595.1| - 1.2e-24 85.1 0.2 4e-11 42.2 0.0 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330507167|ref|YP_004383595.1| - 4.3e-21 75.3 0.5 5.2e-11 43.0 0.0 2.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330507167|ref|YP_004383595.1| - 6.2e-21 72.8 0.0 3.9e-09 35.9 0.0 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330507167|ref|YP_004383595.1| - 5.9e-18 64.3 0.1 2.2e-07 30.5 0.2 4.2 2 1 2 4 4 4 3 TPR repeat TPR_12 PF13424.6 gi|330507167|ref|YP_004383595.1| - 7.7e-14 51.8 1.2 4.9e-05 23.5 0.0 3.9 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330507167|ref|YP_004383595.1| - 3.6e-13 49.5 0.4 3.1e-06 27.2 0.6 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330507167|ref|YP_004383595.1| - 2.7e-12 46.4 1.8 0.00014 22.4 0.1 4.2 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330507167|ref|YP_004383595.1| - 2.3e-11 44.0 1.3 2.5e-05 24.7 0.5 3.2 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330507167|ref|YP_004383595.1| - 6.6e-11 41.5 0.2 6.4e-06 26.0 0.0 4.4 4 1 1 5 5 5 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330507167|ref|YP_004383595.1| - 1e-10 41.2 1.1 4.6e-05 23.5 0.1 3.4 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330507167|ref|YP_004383595.1| - 1.4e-09 37.5 5.6 0.006 16.4 0.1 3.6 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330507167|ref|YP_004383595.1| - 2.3e-08 33.5 0.2 0.00055 19.8 0.0 3.8 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330507167|ref|YP_004383595.1| - 3.5e-08 33.6 0.4 1.2 9.9 0.0 3.9 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_3 PF07720.12 gi|330507167|ref|YP_004383595.1| - 1.7e-05 24.7 0.0 0.27 11.3 0.0 3.8 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|330507167|ref|YP_004383595.1| - 3.7e-05 23.9 0.8 0.55 11.0 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat BTAD PF03704.17 gi|330507167|ref|YP_004383595.1| - 0.0014 19.1 0.1 0.19 12.2 0.1 2.5 1 1 2 3 3 3 2 Bacterial transcriptional activator domain ANAPC3 PF12895.7 gi|330507167|ref|YP_004383595.1| - 0.0024 18.0 0.0 0.1 12.8 0.0 2.2 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 PPR PF01535.20 gi|330507167|ref|YP_004383595.1| - 0.0061 16.7 0.4 31 5.1 0.0 4.1 4 0 0 4 4 4 0 PPR repeat DUF3856 PF12968.7 gi|330507167|ref|YP_004383595.1| - 0.0089 16.1 0.1 1.2 9.2 0.0 2.8 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) NIT PF08376.10 gi|330507167|ref|YP_004383595.1| - 0.023 15.1 0.1 0.03 14.8 0.1 1.1 1 0 0 1 1 1 0 Nitrate and nitrite sensing AsnC_trans_reg PF01037.21 gi|330507168|ref|YP_004383596.1| - 1.6e-10 40.8 0.1 1.9e-10 40.6 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|330507168|ref|YP_004383596.1| - 0.00071 19.6 0.5 0.00095 19.2 0.5 1.0 1 0 0 1 1 1 1 NapD protein MFS_1 PF07690.16 gi|330507169|ref|YP_004383597.1| - 9.8e-59 199.0 43.7 1.7e-35 122.6 22.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|330507169|ref|YP_004383597.1| - 9.4e-18 64.2 14.2 2.2e-11 43.2 7.9 2.9 2 1 0 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|330507169|ref|YP_004383597.1| - 3.1e-10 39.5 27.4 1.7e-06 27.2 9.3 2.8 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|330507169|ref|YP_004383597.1| - 5.3e-07 28.4 13.9 2.9e-06 26.0 1.8 2.6 2 1 0 2 2 2 2 Transmembrane secretion effector UNC-93 PF05978.16 gi|330507169|ref|YP_004383597.1| - 3.5e-06 26.8 1.9 3.5e-06 26.8 1.9 2.6 2 1 0 2 2 2 1 Ion channel regulatory protein UNC-93 Nuc_H_symport PF03825.16 gi|330507169|ref|YP_004383597.1| - 0.033 13.2 22.2 0.017 14.1 8.5 2.4 2 1 0 2 2 2 0 Nucleoside H+ symporter PUCC PF03209.15 gi|330507169|ref|YP_004383597.1| - 0.042 12.8 20.7 0.088 11.8 8.5 2.3 2 0 0 2 2 2 0 PUCC protein UPF0060 PF02694.15 gi|330507169|ref|YP_004383597.1| - 0.057 13.7 6.2 0.053 13.8 2.1 2.9 2 0 0 2 2 2 0 Uncharacterised BCR, YnfA/UPF0060 family EcsB PF05975.12 gi|330507169|ref|YP_004383597.1| - 6.6 5.5 17.6 1.1 8.0 4.5 2.4 2 1 0 2 2 2 0 Bacterial ABC transporter protein EcsB SdrD_B PF17210.3 gi|330507171|ref|YP_004383599.1| - 5.9e-83 274.5 26.5 9.5e-16 58.0 1.0 7.7 7 0 0 7 7 7 6 SdrD B-like domain CarboxypepD_reg PF13620.6 gi|330507171|ref|YP_004383599.1| - 3.4e-36 123.4 29.6 1.2e-05 25.4 2.7 9.9 8 0 0 8 8 7 6 Carboxypeptidase regulatory-like domain SpaA PF17802.1 gi|330507171|ref|YP_004383599.1| - 3.9e-30 104.0 20.4 0.00029 21.1 0.2 7.4 6 0 0 6 6 6 6 Prealbumin-like fold domain Y_Y_Y PF07495.13 gi|330507171|ref|YP_004383599.1| - 4.4e-27 93.8 39.7 2.1 8.4 0.7 24.0 25 0 0 25 25 25 4 Y_Y_Y domain Big_7 PF17957.1 gi|330507171|ref|YP_004383599.1| - 5.6e-19 68.7 113.2 0.018 15.8 0.5 21.9 23 1 1 24 24 24 11 Bacterial Ig domain CarbopepD_reg_2 PF13715.6 gi|330507171|ref|YP_004383599.1| - 1.4e-13 50.6 15.4 0.014 15.3 1.2 7.0 6 0 0 6 6 6 5 CarboxypepD_reg-like domain DUF2012 PF09430.10 gi|330507171|ref|YP_004383599.1| - 2.6e-12 46.9 0.1 0.039 14.1 0.0 6.0 5 0 0 5 5 5 4 Protein of unknown function (DUF2012) DUF4399 PF14347.6 gi|330507171|ref|YP_004383599.1| - 7.7e-11 42.2 0.0 87 3.6 0.0 12.3 13 0 0 13 13 13 0 Domain of unknown function (DUF4399) Dioxygenase_C PF00775.21 gi|330507171|ref|YP_004383599.1| - 1.9e-08 34.0 2.7 0.49 9.8 0.0 6.2 6 0 0 6 6 6 2 Dioxygenase bMG3 PF11974.8 gi|330507171|ref|YP_004383599.1| - 0.0011 19.0 2.9 1.4 9.0 0.0 5.5 7 0 0 7 7 6 1 Bacterial alpha-2-macroglobulin MG3 domain Cadherin PF00028.17 gi|330507171|ref|YP_004383599.1| - 0.14 12.6 12.8 7.3e+02 0.7 0.0 11.0 12 0 0 12 12 11 0 Cadherin domain fn3_3 PF14686.6 gi|330507171|ref|YP_004383599.1| - 0.17 11.7 37.9 0.18 11.6 1.0 9.7 10 0 0 10 10 10 0 Polysaccharide lyase family 4, domain II Fae PF08714.11 gi|330507172|ref|YP_004383600.1| - 5.8e-72 240.8 0.2 6.5e-72 240.7 0.2 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) DUF4849 PF16141.5 gi|330507172|ref|YP_004383600.1| - 0.068 12.4 0.1 0.08 12.2 0.1 1.1 1 0 0 1 1 1 0 Putative glycoside hydrolase Family 18, chitinase_18 GATase PF00117.28 gi|330507173|ref|YP_004383601.1| - 6.3e-33 114.1 0.0 7.8e-33 113.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|330507173|ref|YP_004383601.1| - 4.1e-12 46.3 4.3 8.8e-12 45.2 1.0 2.4 2 1 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|330507173|ref|YP_004383601.1| - 0.0012 18.5 2.0 0.013 15.1 2.0 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CxxCxxCC PF03692.15 gi|330507174|ref|YP_004383602.1| - 1.1e-12 48.4 2.5 2e-12 47.6 0.5 2.1 1 1 1 2 2 2 1 Putative zinc- or iron-chelating domain DnaJ_C PF01556.18 gi|330507175|ref|YP_004383603.1| - 1.2e-42 145.4 0.0 1.6e-42 145.0 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|330507175|ref|YP_004383603.1| - 7.9e-28 96.4 2.1 1.3e-27 95.7 2.1 1.3 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|330507175|ref|YP_004383603.1| - 3e-15 56.3 16.3 5.4e-15 55.5 16.3 1.4 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|330507175|ref|YP_004383603.1| - 8.5e-05 22.4 17.9 0.0034 17.3 3.5 3.6 1 1 2 3 3 3 3 Tryptophan RNA-binding attenuator protein inhibitory protein DUF5351 PF17302.2 gi|330507175|ref|YP_004383603.1| - 0.79 10.0 22.7 4.3 7.6 0.7 4.4 4 0 0 4 4 4 0 Family of unknown function (DUF5351) OrfB_Zn_ribbon PF07282.11 gi|330507175|ref|YP_004383603.1| - 3 7.8 8.3 0.69 9.9 0.8 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|330507175|ref|YP_004383603.1| - 9.1 6.4 9.2 13 5.9 2.2 2.4 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|330507175|ref|YP_004383603.1| - 9.2 6.4 11.2 65 3.7 11.2 2.1 1 1 0 1 1 1 0 Double zinc ribbon HSP70 PF00012.20 gi|330507176|ref|YP_004383604.1| - 1.1e-223 743.9 13.2 8.6e-221 734.3 13.2 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|330507176|ref|YP_004383604.1| - 8e-17 61.0 4.0 8e-17 61.0 4.0 2.6 2 1 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.16 gi|330507176|ref|YP_004383604.1| - 0.00016 21.5 0.0 0.00033 20.4 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain DUF45 PF01863.17 gi|330507176|ref|YP_004383604.1| - 1.7 8.6 4.1 4.1 7.4 4.1 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF45 Vfa1 PF08432.10 gi|330507176|ref|YP_004383604.1| - 3 8.1 9.1 4.7 7.5 9.1 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 GrpE PF01025.19 gi|330507177|ref|YP_004383605.1| - 6.4e-36 123.5 6.0 1.1e-35 122.7 6.0 1.3 1 1 0 1 1 1 1 GrpE LMP PF04778.12 gi|330507177|ref|YP_004383605.1| - 0.032 14.2 0.4 0.054 13.4 0.4 1.5 1 0 0 1 1 1 0 LMP repeated region DUF1664 PF07889.12 gi|330507177|ref|YP_004383605.1| - 0.15 12.1 1.0 0.32 11.1 1.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Cpn60_TCP1 PF00118.24 gi|330507178|ref|YP_004383606.1| - 3.7e-164 547.0 15.3 4.2e-164 546.8 15.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family ABC_tran PF00005.27 gi|330507179|ref|YP_004383607.1| - 6.5e-30 104.4 0.0 9.6e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330507179|ref|YP_004383607.1| - 2.6e-12 47.2 0.0 1.3e-05 25.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330507179|ref|YP_004383607.1| - 2.1e-07 30.6 0.0 3.5e-06 26.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|330507179|ref|YP_004383607.1| - 1.2e-05 25.2 0.0 1.8e-05 24.6 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|330507179|ref|YP_004383607.1| - 3.9e-05 23.7 0.0 6.2e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|330507179|ref|YP_004383607.1| - 5.3e-05 23.2 0.0 0.00012 22.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|330507179|ref|YP_004383607.1| - 0.00023 21.4 0.0 0.0006 20.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|330507179|ref|YP_004383607.1| - 0.0004 21.0 0.2 0.00068 20.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|330507179|ref|YP_004383607.1| - 0.00096 18.9 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|330507179|ref|YP_004383607.1| - 0.0011 19.4 0.0 0.0019 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|330507179|ref|YP_004383607.1| - 0.0079 16.7 0.0 0.021 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|330507179|ref|YP_004383607.1| - 0.013 14.2 0.0 0.024 13.3 0.0 1.4 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|330507179|ref|YP_004383607.1| - 0.014 15.2 0.0 0.72 9.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.29 gi|330507179|ref|YP_004383607.1| - 0.019 15.4 0.0 0.41 11.1 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|330507179|ref|YP_004383607.1| - 0.022 14.9 0.0 0.035 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|330507179|ref|YP_004383607.1| - 0.022 14.5 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 gi|330507179|ref|YP_004383607.1| - 0.035 13.7 0.0 0.098 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|330507179|ref|YP_004383607.1| - 0.079 12.9 0.1 0.36 10.7 0.1 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|330507179|ref|YP_004383607.1| - 0.099 12.3 0.0 1.5 8.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|330507179|ref|YP_004383607.1| - 0.12 11.6 0.0 0.17 11.1 0.0 1.4 1 1 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.6 gi|330507179|ref|YP_004383607.1| - 0.13 12.0 0.0 0.25 11.0 0.0 1.5 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|330507179|ref|YP_004383607.1| - 0.14 12.6 0.1 0.51 10.7 0.1 2.1 1 1 1 2 2 2 0 RNA helicase Viral_helicase1 PF01443.18 gi|330507179|ref|YP_004383607.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PPV_E1_C PF00519.17 gi|330507179|ref|YP_004383607.1| - 0.18 10.6 0.0 0.38 9.5 0.0 1.4 1 0 0 1 1 1 0 Papillomavirus helicase PhoU PF01895.19 gi|330507180|ref|YP_004383608.1| - 8.5e-43 144.7 11.6 8.4e-22 77.4 3.8 2.1 2 0 0 2 2 2 2 PhoU domain DUF4618 PF15397.6 gi|330507180|ref|YP_004383608.1| - 0.0015 18.0 0.9 0.0094 15.4 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4618) Hema_stalk PF08720.10 gi|330507180|ref|YP_004383608.1| - 0.089 12.5 1.0 0.12 12.1 1.0 1.3 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk PhoU PF01895.19 gi|330507181|ref|YP_004383609.1| - 3.1e-22 78.8 10.9 1.2e-18 67.3 2.3 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|330507181|ref|YP_004383609.1| - 0.00013 21.8 0.0 0.00039 20.3 0.0 1.9 1 1 1 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PSY3 PF16836.5 gi|330507181|ref|YP_004383609.1| - 0.023 14.2 4.5 0.039 13.5 4.5 1.3 1 0 0 1 1 1 0 Shu complex component Psy3, DNA-binding description Peptidase_C37 PF05416.12 gi|330507181|ref|YP_004383609.1| - 0.039 12.5 0.1 0.055 12.0 0.1 1.2 1 0 0 1 1 1 0 Southampton virus-type processing peptidase DrsE PF02635.15 gi|330507181|ref|YP_004383609.1| - 0.11 12.8 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 DsrE/DsrF-like family DUF2299 PF10061.9 gi|330507181|ref|YP_004383609.1| - 0.12 12.1 1.1 17 5.2 0.1 2.6 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2299) DNA_binding_1 PF01035.20 gi|330507182|ref|YP_004383610.1| - 3.7e-28 97.5 0.0 5.4e-28 97.0 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Metallophos_2 PF12850.7 gi|330507183|ref|YP_004383611.1| - 5.4e-26 91.7 0.0 6.2e-26 91.6 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|330507183|ref|YP_004383611.1| - 0.00045 20.8 0.9 0.0012 19.4 0.9 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase SH3_6 PF12913.7 gi|330507186|ref|YP_004383614.1| - 7.4e-08 31.8 0.1 0.31 10.6 0.0 4.9 5 0 0 5 5 5 3 SH3 domain (SH3b1 type) Trypsin PF00089.26 gi|330507186|ref|YP_004383614.1| - 6.7e-06 26.1 0.0 1.4e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Trypsin Trypsin_2 PF13365.6 gi|330507186|ref|YP_004383614.1| - 0.00024 22.0 0.2 0.0031 18.4 0.0 2.9 2 0 0 2 2 2 1 Trypsin-like peptidase domain PapC_C PF13953.6 gi|330507186|ref|YP_004383614.1| - 0.005 16.6 5.2 0.86 9.5 0.1 5.6 7 0 0 7 7 7 1 PapC C-terminal domain MTD PF01993.18 gi|330507187|ref|YP_004383615.1| - 1.4e-120 401.8 0.4 1.5e-120 401.6 0.4 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF2529 PF10740.9 gi|330507187|ref|YP_004383615.1| - 0.087 12.5 0.1 0.87 9.2 0.1 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF2529) ABC_tran PF00005.27 gi|330507188|ref|YP_004383616.1| - 1.6e-31 109.7 0.0 2.3e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330507188|ref|YP_004383616.1| - 8e-08 32.4 0.0 0.0032 17.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|330507188|ref|YP_004383616.1| - 1.8e-06 28.4 0.3 1.7e-05 25.3 0.3 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|330507188|ref|YP_004383616.1| - 0.0001 22.3 0.0 0.00019 21.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|330507188|ref|YP_004383616.1| - 0.00093 19.6 0.0 0.0013 19.2 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|330507188|ref|YP_004383616.1| - 0.0012 19.2 0.0 0.0049 17.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|330507188|ref|YP_004383616.1| - 0.0013 19.1 0.0 0.003 17.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|330507188|ref|YP_004383616.1| - 0.0042 17.6 0.0 0.0072 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|330507188|ref|YP_004383616.1| - 0.0054 16.7 0.0 0.03 14.3 0.0 1.9 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|330507188|ref|YP_004383616.1| - 0.0056 16.8 0.0 0.018 15.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|330507188|ref|YP_004383616.1| - 0.0082 16.1 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|330507188|ref|YP_004383616.1| - 0.0083 15.9 0.0 0.041 13.6 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|330507188|ref|YP_004383616.1| - 0.016 15.0 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|330507188|ref|YP_004383616.1| - 0.022 14.5 0.0 0.17 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|330507188|ref|YP_004383616.1| - 0.024 14.1 0.1 0.054 12.9 0.0 1.5 2 0 0 2 2 2 0 PhoH-like protein SMC_N PF02463.19 gi|330507188|ref|YP_004383616.1| - 0.026 14.0 0.0 4.9 6.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NACHT PF05729.12 gi|330507188|ref|YP_004383616.1| - 0.031 14.2 0.1 0.089 12.7 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 gi|330507188|ref|YP_004383616.1| - 0.049 13.6 0.2 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.9 gi|330507188|ref|YP_004383616.1| - 0.05 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.17 gi|330507188|ref|YP_004383616.1| - 0.061 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|330507188|ref|YP_004383616.1| - 0.066 12.7 0.0 0.15 11.6 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|330507188|ref|YP_004383616.1| - 0.074 12.4 0.0 0.35 10.2 0.0 2.0 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|330507188|ref|YP_004383616.1| - 0.096 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain TsaE PF02367.17 gi|330507188|ref|YP_004383616.1| - 0.18 11.8 0.0 0.31 11.0 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 gi|330507188|ref|YP_004383616.1| - 0.2 11.9 0.1 0.61 10.4 0.1 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Fe-ADH_2 PF13685.6 gi|330507189|ref|YP_004383617.1| - 2.7e-68 230.4 0.1 4.4e-68 229.7 0.1 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|330507189|ref|YP_004383617.1| - 3.5e-20 72.2 2.8 1.4e-19 70.2 2.8 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|330507189|ref|YP_004383617.1| - 0.00024 20.4 0.1 0.00077 18.7 0.1 1.9 1 1 0 1 1 1 1 3-dehydroquinate synthase AIRC PF00731.20 gi|330507189|ref|YP_004383617.1| - 0.0043 16.6 0.3 0.011 15.3 0.2 1.7 1 1 0 1 1 1 1 AIR carboxylase DUF3362 PF11842.8 gi|330507189|ref|YP_004383617.1| - 0.15 12.4 0.0 0.26 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3362) UPF0179 PF03684.13 gi|330507190|ref|YP_004383618.1| - 4.2e-54 182.2 0.3 4.7e-54 182.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Radical_SAM PF04055.21 gi|330507191|ref|YP_004383619.1| - 3e-13 50.5 0.1 8.5e-12 45.8 0.0 2.2 1 1 1 2 2 2 2 Radical SAM superfamily MFS_Mycoplasma PF07672.13 gi|330507192|ref|YP_004383620.1| - 0.046 13.0 1.2 0.048 12.9 1.2 1.0 1 0 0 1 1 1 0 Mycoplasma MFS transporter DUF4181 PF13789.6 gi|330507192|ref|YP_004383620.1| - 0.11 12.8 1.5 0.13 12.5 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4181) Fun_ATP-synt_8 PF05933.13 gi|330507192|ref|YP_004383620.1| - 0.27 11.4 0.1 0.27 11.4 0.1 2.0 2 0 0 2 2 2 0 Fungal ATP synthase protein 8 (A6L) TssO PF17561.2 gi|330507192|ref|YP_004383620.1| - 0.37 10.9 0.1 0.37 10.9 0.1 1.4 2 0 0 2 2 2 0 Type VI secretion system, TssO DUF2207 PF09972.9 gi|330507192|ref|YP_004383620.1| - 0.81 8.4 3.1 0.87 8.3 3.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SepF PF04472.12 gi|330507193|ref|YP_004383621.1| - 2e-12 47.2 0.4 2.7e-12 46.8 0.4 1.2 1 0 0 1 1 1 1 Cell division protein SepF zf-ZPR1 PF03367.13 gi|330507194|ref|YP_004383622.1| - 8e-36 123.3 0.0 9.4e-36 123.1 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain AtuA PF07287.11 gi|330507194|ref|YP_004383622.1| - 0.12 11.1 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 Acyclic terpene utilisation family protein AtuA UPF0052 PF01933.18 gi|330507195|ref|YP_004383623.1| - 1.8e-44 152.1 0.0 2.1e-44 151.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 DUF3245 PF11595.8 gi|330507197|ref|YP_004383625.1| - 0.091 13.2 0.1 0.12 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3245) CxxCxxCC PF03692.15 gi|330507198|ref|YP_004383626.1| - 6.1e-11 42.9 0.7 1.4e-10 41.7 0.7 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|330507198|ref|YP_004383626.1| - 0.11 12.3 1.4 0.21 11.4 1.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3109) MtrH PF02007.18 gi|330507199|ref|YP_004383627.1| - 1.6e-121 405.1 0.6 1.8e-121 404.9 0.6 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrG PF04210.13 gi|330507200|ref|YP_004383628.1| - 2.3e-26 91.4 0.2 2.7e-26 91.2 0.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G MtrF PF09472.10 gi|330507201|ref|YP_004383629.1| - 1.3e-27 94.9 0.6 1.7e-27 94.6 0.6 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF5593 PF18007.1 gi|330507201|ref|YP_004383629.1| - 0.1 13.3 0.0 0.12 13.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5593) MtrA PF04208.14 gi|330507202|ref|YP_004383630.1| - 9.6e-84 279.3 2.0 1.2e-83 278.9 2.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|330507202|ref|YP_004383630.1| - 0.095 12.1 2.3 0.36 10.2 2.3 2.0 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrB PF05440.12 gi|330507203|ref|YP_004383631.1| - 1.8e-35 121.2 0.1 2.1e-35 121.0 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrF PF09472.10 gi|330507203|ref|YP_004383631.1| - 0.029 13.7 1.1 0.036 13.5 0.2 1.6 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MotB_plug PF13677.6 gi|330507203|ref|YP_004383631.1| - 0.033 13.8 0.2 0.082 12.5 0.1 1.7 2 0 0 2 2 2 0 Membrane MotB of proton-channel complex MotA/MotB MtrC PF04211.13 gi|330507204|ref|YP_004383632.1| - 3e-104 347.8 25.7 3.6e-104 347.6 25.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C TauE PF01925.19 gi|330507204|ref|YP_004383632.1| - 0.027 14.1 33.6 0.44 10.1 2.4 3.0 1 1 2 3 3 3 0 Sulfite exporter TauE/SafE Ost5 PF05251.12 gi|330507204|ref|YP_004383632.1| - 0.16 12.3 0.1 0.16 12.3 0.1 4.1 3 1 2 5 5 5 0 Oligosaccharyltransferase subunit 5 DUF697 PF05128.12 gi|330507204|ref|YP_004383632.1| - 0.64 9.7 6.4 7.2 6.3 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF697) MtrD PF04207.12 gi|330507205|ref|YP_004383633.1| - 1.1e-93 312.9 27.9 1.4e-93 312.6 27.9 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrE PF04206.12 gi|330507206|ref|YP_004383634.1| - 5.1e-128 426.1 8.8 5.7e-128 425.9 8.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E Phage_holin_3_1 PF05106.12 gi|330507206|ref|YP_004383634.1| - 0.0078 16.6 0.4 0.35 11.3 0.1 3.0 3 0 0 3 3 3 1 Phage holin family (Lysis protein S) CarS-like PF01864.17 gi|330507207|ref|YP_004383635.1| - 2.8e-51 174.0 6.7 3.1e-51 173.8 6.7 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|330507207|ref|YP_004383635.1| - 2.1e-05 24.5 0.5 2.1e-05 24.5 0.5 2.1 2 0 0 2 2 2 1 Cytidylyltransferase family HTH_3 PF01381.22 gi|330507209|ref|YP_004383637.1| - 6.6e-09 35.7 0.0 1.5e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|330507209|ref|YP_004383637.1| - 6.7e-09 35.6 0.0 1.6e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|330507209|ref|YP_004383637.1| - 7.3e-07 29.4 0.0 1.6e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|330507209|ref|YP_004383637.1| - 0.026 14.4 0.0 0.11 12.4 0.0 2.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|330507209|ref|YP_004383637.1| - 0.033 13.8 0.0 0.13 11.8 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|330507209|ref|YP_004383637.1| - 0.054 13.9 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MarR PF01047.22 gi|330507209|ref|YP_004383637.1| - 0.11 12.5 0.0 4.1 7.4 0.0 2.8 3 0 0 3 3 3 0 MarR family HTH_5 PF01022.20 gi|330507209|ref|YP_004383637.1| - 0.12 12.3 0.3 0.57 10.1 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family ACP_syn_III_C PF08541.10 gi|330507210|ref|YP_004383638.1| - 4.3e-09 36.4 0.0 8.1e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|330507210|ref|YP_004383638.1| - 3.8e-06 26.7 0.0 0.00019 21.2 0.0 2.4 2 1 1 3 3 3 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|330507210|ref|YP_004383638.1| - 0.026 13.9 0.1 0.041 13.3 0.1 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain Thiolase_N PF00108.23 gi|330507211|ref|YP_004383639.1| - 1.1e-25 90.6 3.2 1.6e-25 89.9 2.1 1.8 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|330507211|ref|YP_004383639.1| - 9.8e-11 41.4 0.5 3.1e-10 39.8 0.5 1.9 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|330507211|ref|YP_004383639.1| - 1.2e-07 31.6 9.7 2.1e-07 30.8 5.5 3.1 3 1 2 5 5 5 1 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.11 gi|330507211|ref|YP_004383639.1| - 0.0065 15.2 0.1 0.012 14.4 0.1 1.3 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) ACP_syn_III PF08545.10 gi|330507211|ref|YP_004383639.1| - 0.031 14.1 3.0 1.9 8.4 1.5 2.6 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|330507211|ref|YP_004383639.1| - 0.14 12.2 3.2 1 9.4 0.0 3.2 3 1 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|330507212|ref|YP_004383640.1| - 1.1e-19 70.2 0.0 1.4e-19 69.8 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|330507212|ref|YP_004383640.1| - 2e-10 40.3 3.1 3.5e-10 39.6 3.1 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-CCHC_5 PF14787.6 gi|330507212|ref|YP_004383640.1| - 0.034 13.8 0.5 0.034 13.8 0.5 1.7 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger TackOD1 PF18551.1 gi|330507212|ref|YP_004383640.1| - 0.058 13.1 0.6 0.088 12.5 0.6 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 FdhE PF04216.12 gi|330507212|ref|YP_004383640.1| - 0.13 12.2 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Auto_anti-p27 PF06677.12 gi|330507212|ref|YP_004383640.1| - 0.25 11.6 1.9 0.55 10.4 1.9 1.6 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Membrane_bind PF14564.6 gi|330507214|ref|YP_004383642.1| - 0.0034 17.8 0.1 0.44 11.0 0.1 2.6 2 1 0 2 2 2 2 Membrane binding DUF1616 PF07760.11 gi|330507215|ref|YP_004383643.1| - 2.5e-108 361.9 0.7 3e-108 361.7 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2070 PF09843.9 gi|330507215|ref|YP_004383643.1| - 0.12 10.6 8.0 0.16 10.2 8.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) dCMP_cyt_deam_1 PF00383.23 gi|330507217|ref|YP_004383645.1| - 1.7e-13 50.3 0.1 2.9e-13 49.6 0.1 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|330507217|ref|YP_004383645.1| - 7.5e-09 35.5 0.1 1.7e-07 31.0 0.1 2.1 1 1 0 1 1 1 1 MafB19-like deaminase Lactonase PF10282.9 gi|330507218|ref|YP_004383646.1| - 1.4e-10 41.0 0.1 0.0095 15.2 0.0 4.3 1 1 3 4 4 4 4 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.16 gi|330507218|ref|YP_004383646.1| - 2.8e-08 32.7 0.3 0.0032 16.1 0.1 2.7 1 1 1 2 2 2 2 Cytochrome D1 heme domain Arylesterase PF01731.20 gi|330507218|ref|YP_004383646.1| - 7.4e-07 29.3 1.3 1.2 9.3 0.0 4.8 3 2 1 5 5 5 2 Arylesterase SGL PF08450.12 gi|330507218|ref|YP_004383646.1| - 8.8e-07 28.8 0.1 0.32 10.5 0.0 4.1 1 1 4 5 5 5 3 SMP-30/Gluconolactonase/LRE-like region NHL PF01436.21 gi|330507218|ref|YP_004383646.1| - 7.6e-05 22.6 0.5 21 5.4 0.0 5.3 5 0 0 5 5 5 1 NHL repeat PD40 PF07676.12 gi|330507218|ref|YP_004383646.1| - 0.0018 18.1 0.2 8.7 6.4 0.0 3.8 3 0 0 3 3 3 1 WD40-like Beta Propeller Repeat SBP56 PF05694.11 gi|330507218|ref|YP_004383646.1| - 0.1 11.4 0.0 0.89 8.3 0.0 2.1 2 0 0 2 2 2 0 56kDa selenium binding protein (SBP56) VWA_2 PF13519.6 gi|330507219|ref|YP_004383647.1| - 0.009 16.6 0.0 0.017 15.7 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain GXGXG PF01493.19 gi|330507220|ref|YP_004383648.1| - 6.5e-14 52.0 23.9 1.9e-11 43.9 15.5 2.5 1 1 1 2 2 2 2 GXGXG motif AAA_3 PF07726.11 gi|330507221|ref|YP_004383649.1| - 3.4e-05 23.7 0.0 0.00019 21.3 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Radical_SAM PF04055.21 gi|330507222|ref|YP_004383650.1| - 7.8e-11 42.6 0.0 9.1e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily DNA_gyraseB PF00204.25 gi|330507223|ref|YP_004383651.1| - 8.3e-63 211.0 0.3 1.3e-62 210.4 0.3 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|330507223|ref|YP_004383651.1| - 8.7e-31 105.9 0.8 2.6e-30 104.4 0.3 2.1 2 0 0 2 2 2 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|330507223|ref|YP_004383651.1| - 2.4e-23 82.8 0.1 6e-23 81.5 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|330507223|ref|YP_004383651.1| - 5.4e-18 65.1 0.0 1.3e-17 63.8 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|330507223|ref|YP_004383651.1| - 0.002 18.0 0.1 0.011 15.5 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.20 gi|330507224|ref|YP_004383652.1| - 8.9e-160 532.2 0.1 1.1e-159 531.9 0.1 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|330507224|ref|YP_004383652.1| - 4.5e-75 246.9 14.9 3e-14 52.2 0.2 6.6 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller FliT PF05400.13 gi|330507224|ref|YP_004383652.1| - 0.57 11.0 4.8 1.6 9.6 4.8 1.8 1 0 0 1 1 1 0 Flagellar protein FliT TPD52 PF04201.15 gi|330507224|ref|YP_004383652.1| - 1.1 8.8 4.4 2.2 7.8 2.4 2.1 2 0 0 2 2 2 0 Tumour protein D52 family DEAD PF00270.29 gi|330507225|ref|YP_004383653.1| - 1.9e-20 73.3 0.0 4.3e-20 72.2 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|330507225|ref|YP_004383653.1| - 2.6e-05 24.3 0.0 5.1e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|330507225|ref|YP_004383653.1| - 0.0012 19.2 0.0 0.0074 16.6 0.0 2.2 1 1 0 1 1 1 1 Helicase conserved C-terminal domain DUF1837 PF08878.11 gi|330507226|ref|YP_004383654.1| - 5.4e-15 55.8 0.0 7.4e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1837) PIN PF01850.21 gi|330507227|ref|YP_004383655.1| - 7.3e-24 84.6 0.2 8.8e-24 84.3 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|330507227|ref|YP_004383655.1| - 5e-06 27.1 1.2 6.7e-06 26.7 1.2 1.4 1 1 0 1 1 1 1 PIN domain DUF104 PF01954.16 gi|330507228|ref|YP_004383656.1| - 1.5e-20 73.3 1.9 1.8e-20 73.1 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF22 PF01629.16 gi|330507228|ref|YP_004383656.1| - 0.098 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF22 TPP_enzyme_C PF02775.21 gi|330507229|ref|YP_004383657.1| - 5.8e-25 87.9 0.0 9.9e-25 87.1 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|330507229|ref|YP_004383657.1| - 1.8e-13 50.8 0.3 4e-13 49.7 0.3 1.5 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|330507229|ref|YP_004383657.1| - 1.2e-06 28.1 2.8 1.2e-06 28.1 2.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330507229|ref|YP_004383657.1| - 1.7e-05 24.7 1.8 1.7e-05 24.7 1.8 2.8 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330507229|ref|YP_004383657.1| - 0.00019 21.5 11.1 0.012 15.8 2.5 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330507229|ref|YP_004383657.1| - 0.00026 20.9 9.6 0.005 16.9 1.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330507229|ref|YP_004383657.1| - 0.0026 17.8 9.8 0.017 15.2 2.0 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330507229|ref|YP_004383657.1| - 0.01 16.0 10.8 0.054 13.7 10.7 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330507229|ref|YP_004383657.1| - 0.012 16.2 10.5 0.56 10.8 10.5 2.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|330507229|ref|YP_004383657.1| - 0.018 14.7 0.2 0.051 13.2 0.1 1.8 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_16 PF13484.6 gi|330507229|ref|YP_004383657.1| - 0.027 15.4 1.7 0.027 15.4 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain PFOR_II PF17147.4 gi|330507229|ref|YP_004383657.1| - 0.046 14.0 0.0 0.23 11.8 0.0 2.1 2 0 0 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II DXP_synthase_N PF13292.6 gi|330507229|ref|YP_004383657.1| - 0.23 10.7 0.1 0.37 9.9 0.1 1.2 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_4 PF12800.7 gi|330507229|ref|YP_004383657.1| - 1.4 9.7 11.7 0.21 12.2 2.8 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330507229|ref|YP_004383657.1| - 1.4 9.5 12.4 0.59 10.7 2.6 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|330507230|ref|YP_004383658.1| - 2.9e-39 135.0 0.0 3.5e-39 134.7 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase AMP-binding_C_2 PF14535.6 gi|330507231|ref|YP_004383659.1| - 5.2e-19 68.4 0.0 1.1e-18 67.3 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|330507231|ref|YP_004383659.1| - 1.3e-14 53.7 0.0 2e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|330507231|ref|YP_004383659.1| - 6.4e-07 28.7 0.0 5.6e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.13 gi|330507231|ref|YP_004383659.1| - 0.0074 15.2 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 GH3 auxin-responsive promoter ABC_tran PF00005.27 gi|330507233|ref|YP_004383661.1| - 1.1e-32 113.4 0.0 1.6e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330507233|ref|YP_004383661.1| - 1.1e-10 41.8 0.2 0.0001 22.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330507233|ref|YP_004383661.1| - 5.6e-06 25.9 1.2 8e-05 22.2 1.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|330507233|ref|YP_004383661.1| - 1.8e-05 25.2 0.1 4.6e-05 23.9 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|330507233|ref|YP_004383661.1| - 2.1e-05 24.8 1.5 0.00021 21.6 1.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|330507233|ref|YP_004383661.1| - 4.9e-05 23.0 0.1 9.2e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|330507233|ref|YP_004383661.1| - 0.00024 21.7 0.0 0.00047 20.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|330507233|ref|YP_004383661.1| - 0.00028 20.7 0.7 0.0005 19.9 0.1 1.6 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|330507233|ref|YP_004383661.1| - 0.0011 19.0 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|330507233|ref|YP_004383661.1| - 0.0016 17.9 0.1 0.015 14.7 0.0 2.3 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|330507233|ref|YP_004383661.1| - 0.0027 18.2 0.1 0.05 14.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|330507233|ref|YP_004383661.1| - 0.0041 16.0 0.6 0.2 10.4 0.1 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_5 PF07728.14 gi|330507233|ref|YP_004383661.1| - 0.005 16.8 0.1 0.14 12.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DELLA PF12041.8 gi|330507233|ref|YP_004383661.1| - 0.0086 15.9 0.3 0.041 13.8 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator DELLA protein N terminal HSM3_N PF18795.1 gi|330507233|ref|YP_004383661.1| - 0.013 14.9 0.3 0.019 14.4 0.3 1.2 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain NB-ARC PF00931.22 gi|330507233|ref|YP_004383661.1| - 0.014 14.6 0.3 0.2 10.8 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|330507233|ref|YP_004383661.1| - 0.015 15.0 0.0 0.022 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|330507233|ref|YP_004383661.1| - 0.015 14.5 0.0 0.017 14.3 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|330507233|ref|YP_004383661.1| - 0.032 14.4 0.0 0.075 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|330507233|ref|YP_004383661.1| - 0.041 13.5 0.0 0.074 12.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|330507233|ref|YP_004383661.1| - 0.056 13.4 0.2 0.38 10.6 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.6 gi|330507233|ref|YP_004383661.1| - 0.075 13.1 0.0 0.33 11.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|330507233|ref|YP_004383661.1| - 0.085 12.4 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|330507233|ref|YP_004383661.1| - 0.09 13.1 0.5 0.23 11.8 0.5 1.8 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|330507233|ref|YP_004383661.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|330507233|ref|YP_004383661.1| - 0.11 12.7 0.1 1.7 9.0 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MS_channel PF00924.18 gi|330507234|ref|YP_004383662.1| - 4.8e-46 156.9 0.1 4.8e-46 156.9 0.1 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel EI24 PF07264.11 gi|330507234|ref|YP_004383662.1| - 0.044 14.0 4.6 0.068 13.4 4.6 1.3 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Glyoxalase_6 PF18029.1 gi|330507235|ref|YP_004383663.1| - 7.3e-08 33.2 0.0 1.2e-07 32.5 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|330507235|ref|YP_004383663.1| - 0.00067 19.8 0.0 0.0014 18.8 0.0 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PAP2 PF01569.21 gi|330507236|ref|YP_004383664.1| - 2.3e-20 72.7 2.8 2.3e-20 72.7 2.8 2.3 3 1 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|330507236|ref|YP_004383664.1| - 2.8e-06 27.2 7.0 7.7e-06 25.7 7.0 1.8 1 1 0 1 1 1 1 PAP2 superfamily DUF373 PF04123.13 gi|330507236|ref|YP_004383664.1| - 0.14 11.5 4.2 0.046 13.2 1.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF373) PetM PF08041.11 gi|330507236|ref|YP_004383664.1| - 3.1 7.4 11.7 3.6 7.2 2.0 3.5 3 0 0 3 3 3 0 PetM family of cytochrome b6f complex subunit 7 ParD PF09386.10 gi|330507237|ref|YP_004383665.1| - 0.015 15.7 0.5 0.029 14.8 0.5 1.6 1 1 0 1 1 1 0 Antitoxin ParD TaqI_C PF12950.7 gi|330507238|ref|YP_004383666.1| - 7.3e-18 64.8 0.0 3e-17 62.8 0.0 2.1 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain Eco57I PF07669.11 gi|330507238|ref|YP_004383666.1| - 2e-15 57.2 0.0 5.4e-15 55.8 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.16 gi|330507238|ref|YP_004383666.1| - 1.1e-11 44.6 0.0 1.3e-07 31.2 0.0 2.9 2 1 0 2 2 2 2 N-6 DNA Methylase UPF0020 PF01170.18 gi|330507238|ref|YP_004383666.1| - 0.0012 18.6 0.0 0.049 13.3 0.0 2.4 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 ssDNA_DBD PF18333.1 gi|330507238|ref|YP_004383666.1| - 0.05 13.7 0.5 1.4 9.1 0.4 2.6 2 0 0 2 2 2 0 Non-canonical single-stranded DNA-binding domain PIN PF01850.21 gi|330507239|ref|YP_004383667.1| - 6e-05 23.5 0.0 0.0001 22.8 0.0 1.4 1 0 0 1 1 1 1 PIN domain Myb_DNA-bind_4 PF13837.6 gi|330507241|ref|YP_004383669.1| - 0.029 14.7 0.1 0.052 13.9 0.1 1.4 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain RNB PF00773.19 gi|330507242|ref|YP_004383670.1| - 2.5e-75 253.8 0.0 3.1e-75 253.5 0.0 1.1 1 0 0 1 1 1 1 RNB domain RNase_II_C_S1 PF18614.1 gi|330507242|ref|YP_004383670.1| - 9.6e-15 54.3 0.7 3.6e-14 52.4 0.0 2.3 2 0 0 2 2 2 1 RNase II-type exonuclease C-terminal S1 domain S1 PF00575.23 gi|330507242|ref|YP_004383670.1| - 0.017 15.5 0.3 0.59 10.5 0.1 2.9 2 1 0 2 2 2 0 S1 RNA binding domain TM2 PF05154.16 gi|330507243|ref|YP_004383671.1| - 0.0033 17.7 4.7 0.0047 17.2 4.7 1.2 1 0 0 1 1 1 1 TM2 domain Lon_C PF05362.13 gi|330507244|ref|YP_004383672.1| - 5.3e-06 26.1 0.0 9.1e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|330507244|ref|YP_004383672.1| - 0.0054 16.6 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase OrfB_Zn_ribbon PF07282.11 gi|330507246|ref|YP_004383674.1| - 1.9e-21 75.8 0.0 4.7e-21 74.5 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330507246|ref|YP_004383674.1| - 9.1e-11 42.0 0.2 1.7e-10 41.1 0.2 1.5 1 0 0 1 1 1 1 Probable transposase TF_Zn_Ribbon PF08271.12 gi|330507246|ref|YP_004383674.1| - 0.0011 18.4 6.4 0.016 14.7 3.3 2.3 1 1 1 2 2 2 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|330507246|ref|YP_004383674.1| - 0.0057 16.6 3.4 0.013 15.5 3.4 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|330507246|ref|YP_004383674.1| - 0.083 12.9 0.5 0.19 11.8 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|330507246|ref|YP_004383674.1| - 0.33 11.1 3.6 14 5.9 0.1 2.7 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|330507246|ref|YP_004383674.1| - 0.4 10.5 2.4 4.5 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|330507246|ref|YP_004383674.1| - 0.45 10.0 2.4 0.92 9.0 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|330507246|ref|YP_004383674.1| - 0.54 10.3 2.3 20 5.3 0.2 2.8 2 1 0 3 3 3 0 CpXC protein Rubredoxin_2 PF18073.1 gi|330507246|ref|YP_004383674.1| - 2.1 8.2 4.1 7.3 6.4 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain Flavodoxin_2 PF02525.17 gi|330507247|ref|YP_004383675.1| - 4.3e-33 114.7 0.0 4.9e-33 114.5 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|330507247|ref|YP_004383675.1| - 4.8e-10 39.4 0.0 6.3e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase zf-RING_13 PF17977.1 gi|330507247|ref|YP_004383675.1| - 0.16 12.1 0.1 0.34 11.1 0.1 1.5 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain HTH_20 PF12840.7 gi|330507248|ref|YP_004383676.1| - 1.8e-07 31.1 0.1 8.6e-07 28.9 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|330507248|ref|YP_004383676.1| - 4e-06 26.6 0.0 1.7e-05 24.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Glyco_H_20C_C PF18088.1 gi|330507248|ref|YP_004383676.1| - 0.0072 16.2 0.3 0.011 15.5 0.3 1.3 1 0 0 1 1 1 1 Glycoside Hydrolase 20C C-terminal domain HTH_24 PF13412.6 gi|330507248|ref|YP_004383676.1| - 0.04 13.5 0.0 0.095 12.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SICA_alpha PF12887.7 gi|330507248|ref|YP_004383676.1| - 0.059 13.2 0.7 0.084 12.7 0.7 1.2 1 0 0 1 1 1 0 SICA extracellular alpha domain MTH865 PF07747.11 gi|330507249|ref|YP_004383677.1| - 8.8e-32 108.7 0.2 9.8e-32 108.6 0.2 1.0 1 0 0 1 1 1 1 MTH865-like family PhageMin_Tail PF10145.9 gi|330507249|ref|YP_004383677.1| - 0.047 13.5 0.1 0.051 13.4 0.1 1.0 1 0 0 1 1 1 0 Phage-related minor tail protein STT3 PF02516.14 gi|330507250|ref|YP_004383678.1| - 3.2e-20 72.5 37.7 1.3e-19 70.6 37.7 2.2 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|330507250|ref|YP_004383678.1| - 1.1e-11 45.2 16.9 1.1e-11 45.2 16.9 3.7 2 2 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase AglB_L1 PF18079.1 gi|330507250|ref|YP_004383678.1| - 1.3e-09 38.2 0.0 2e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain DUF2339 PF10101.9 gi|330507250|ref|YP_004383678.1| - 0.032 12.8 40.6 0.1 11.2 40.1 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2339) 7TMR-DISM_7TM PF07695.11 gi|330507250|ref|YP_004383678.1| - 0.12 12.2 45.1 0.042 13.7 15.9 3.5 3 0 0 3 3 3 0 7TM diverse intracellular signalling 60KD_IMP PF02096.20 gi|330507250|ref|YP_004383678.1| - 2.2 8.2 6.4 23 4.8 1.8 2.8 2 1 1 3 3 3 0 60Kd inner membrane protein NPCBM_assoc PF10633.9 gi|330507252|ref|YP_004383680.1| - 0.00053 20.2 1.8 0.0022 18.2 0.6 2.5 2 1 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|330507252|ref|YP_004383680.1| - 0.017 15.4 0.8 0.068 13.5 0.3 2.3 2 1 0 2 2 2 0 Domain of unknown function DUF11 He_PIG PF05345.12 gi|330507252|ref|YP_004383680.1| - 0.07 13.3 3.5 18 5.6 0.0 3.5 3 1 0 3 3 3 0 Putative Ig domain Fels1 PF05666.11 gi|330507256|ref|YP_004383684.1| - 0.1 12.3 0.3 0.25 11.0 0.0 1.8 2 0 0 2 2 2 0 Fels-1 Prophage Protein-like Fels1 PF05666.11 gi|330507258|ref|YP_004383686.1| - 0.1 12.3 0.3 0.25 11.0 0.0 1.8 2 0 0 2 2 2 0 Fels-1 Prophage Protein-like NRD1_2 PF01995.16 gi|330507259|ref|YP_004383687.1| - 1.8e-85 286.1 0.0 2.2e-85 285.7 0.0 1.1 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|330507259|ref|YP_004383687.1| - 1e-21 76.6 0.3 2.1e-21 75.6 0.3 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Ribosomal_S6e PF01092.19 gi|330507260|ref|YP_004383688.1| - 3.5e-41 140.1 0.1 4e-41 139.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e FAD_binding_3 PF01494.19 gi|330507261|ref|YP_004383689.1| - 1.4e-12 47.6 0.0 2.4e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|330507261|ref|YP_004383689.1| - 2.6e-05 24.0 4.8 0.0055 16.3 0.5 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|330507261|ref|YP_004383689.1| - 0.00021 21.4 0.2 0.00094 19.4 0.2 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|330507261|ref|YP_004383689.1| - 0.00035 19.8 0.0 0.00066 18.8 0.0 1.4 1 1 0 1 1 1 1 Lycopene cyclase protein HI0933_like PF03486.14 gi|330507261|ref|YP_004383689.1| - 0.00036 19.4 0.3 0.00062 18.6 0.3 1.4 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|330507261|ref|YP_004383689.1| - 0.00037 19.8 0.0 0.00074 18.8 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.14 gi|330507261|ref|YP_004383689.1| - 0.00077 18.4 0.3 0.72 8.6 0.1 2.5 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|330507261|ref|YP_004383689.1| - 0.0013 18.0 0.0 0.0024 17.2 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|330507261|ref|YP_004383689.1| - 0.0018 17.7 1.6 0.0027 17.1 1.1 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330507261|ref|YP_004383689.1| - 0.0033 16.5 4.3 0.018 14.2 0.7 2.4 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.22 gi|330507261|ref|YP_004383689.1| - 0.023 13.8 0.4 0.037 13.1 0.4 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|330507261|ref|YP_004383689.1| - 0.13 12.2 0.1 0.26 11.1 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SSF PF00474.17 gi|330507262|ref|YP_004383690.1| - 3e-29 102.1 33.1 3.8e-29 101.8 33.1 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family Nramp PF01566.18 gi|330507262|ref|YP_004383690.1| - 0.32 9.9 31.2 0.57 9.1 31.2 1.4 1 0 0 1 1 1 0 Natural resistance-associated macrophage protein ILVD_EDD PF00920.21 gi|330507263|ref|YP_004383691.1| - 4e-208 692.2 1.0 4.6e-208 692.0 1.0 1.0 1 0 0 1 1 1 1 Dehydratase family Inhibitor_I78 PF11720.8 gi|330507263|ref|YP_004383691.1| - 0.052 13.6 0.0 1.5 8.9 0.0 2.5 2 0 0 2 2 2 0 Peptidase inhibitor I78 family LigT_PEase PF02834.16 gi|330507264|ref|YP_004383692.1| - 4.9e-29 100.4 0.1 3.1e-15 56.1 0.1 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|330507264|ref|YP_004383692.1| - 1.8e-14 53.9 0.0 2.1e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily tRNA_NucTransf2 PF09249.11 gi|330507265|ref|YP_004383693.1| - 7.4e-43 145.4 0.0 1.1e-42 144.8 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|330507265|ref|YP_004383693.1| - 1.5e-12 47.6 0.0 3.5e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|330507265|ref|YP_004383693.1| - 0.0059 16.7 0.0 0.015 15.3 0.0 1.7 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase SMODS PF18144.1 gi|330507265|ref|YP_004383693.1| - 0.041 14.1 0.0 0.18 11.9 0.0 1.9 1 1 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Hist_deacetyl PF00850.19 gi|330507266|ref|YP_004383694.1| - 6.1e-86 288.7 0.0 8.4e-86 288.2 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain S-layer PF07752.11 gi|330507267|ref|YP_004383695.1| - 5e-182 602.5 33.5 2.7e-92 308.5 12.6 2.1 2 0 0 2 2 2 2 S-layer protein PGF-CTERM PF18204.1 gi|330507267|ref|YP_004383695.1| - 2.4e-08 33.7 2.2 5e-08 32.7 2.2 1.6 1 0 0 1 1 1 1 PGF-CTERM motif Alanine_zipper PF11839.8 gi|330507267|ref|YP_004383695.1| - 0.00029 21.1 7.9 0.00062 20.1 7.9 1.5 1 0 0 1 1 1 1 Alanine-zipper, major outer membrane lipoprotein EF-hand_like PF09279.11 gi|330507267|ref|YP_004383695.1| - 0.00095 19.6 6.9 0.24 11.9 0.1 3.1 3 0 0 3 3 2 2 Phosphoinositide-specific phospholipase C, efhand-like YscO-like PF16789.5 gi|330507267|ref|YP_004383695.1| - 0.0014 18.6 9.2 0.0028 17.7 9.2 1.4 1 0 0 1 1 1 1 YscO-like protein tRNA-synt_1g PF09334.11 gi|330507267|ref|YP_004383695.1| - 0.0026 16.6 0.1 1.9 7.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) MCU PF04678.13 gi|330507267|ref|YP_004383695.1| - 0.083 13.0 0.5 0.17 12.0 0.5 1.5 1 0 0 1 1 1 0 Mitochondrial calcium uniporter ELYS PF13934.6 gi|330507267|ref|YP_004383695.1| - 0.14 12.1 0.0 19 5.1 0.0 2.3 2 0 0 2 2 2 0 Nuclear pore complex assembly ISG65-75 PF11727.8 gi|330507267|ref|YP_004383695.1| - 0.18 11.0 8.9 0.3 10.3 8.9 1.2 1 0 0 1 1 1 0 Invariant surface glycoprotein DUF883 PF05957.13 gi|330507267|ref|YP_004383695.1| - 0.24 12.0 5.5 0.54 10.9 5.5 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) YtxH PF12732.7 gi|330507267|ref|YP_004383695.1| - 1.1 9.9 5.3 5.2 7.7 5.3 2.3 1 0 0 1 1 1 0 YtxH-like protein DUF1771 PF08590.10 gi|330507267|ref|YP_004383695.1| - 3.5 8.1 7.6 5.9 7.3 7.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) Binary_toxB PF03495.14 gi|330507267|ref|YP_004383695.1| - 5.1 7.4 10.6 13 6.1 1.2 2.9 3 0 0 3 3 3 0 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain Dr_adhesin PF12393.8 gi|330507267|ref|YP_004383695.1| - 5.8 7.4 8.0 19 5.7 8.0 2.0 1 0 0 1 1 1 0 Dr family adhesin Radical_SAM PF04055.21 gi|330507268|ref|YP_004383696.1| - 2.1e-17 64.0 0.0 6.8e-17 62.3 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily zf-ribbon_3 PF13248.6 gi|330507268|ref|YP_004383696.1| - 0.032 13.6 7.3 0.61 9.6 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|330507268|ref|YP_004383696.1| - 0.035 14.1 0.1 0.035 14.1 0.1 2.8 3 1 0 3 3 3 0 Double zinc ribbon Fer4_12 PF13353.6 gi|330507268|ref|YP_004383696.1| - 0.059 13.6 0.9 0.11 12.8 0.0 1.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain OrfB_Zn_ribbon PF07282.11 gi|330507268|ref|YP_004383696.1| - 0.17 11.8 0.1 0.17 11.8 0.1 2.3 3 0 0 3 3 3 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|330507268|ref|YP_004383696.1| - 0.78 9.3 4.9 3.5 7.2 0.1 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|330507268|ref|YP_004383696.1| - 1.3 9.2 6.0 12 6.1 0.0 3.6 4 0 0 4 4 4 0 Zinc ribbon domain DHBP_synthase PF00926.19 gi|330507269|ref|YP_004383697.1| - 1.7e-85 285.4 0.5 2.2e-85 285.1 0.5 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.20 gi|330507269|ref|YP_004383697.1| - 3.6e-73 244.5 0.0 8.8e-73 243.3 0.0 1.6 2 0 0 2 2 2 1 GTP cyclohydrolase II HSP20 PF00011.21 gi|330507270|ref|YP_004383698.1| - 3.4e-21 75.3 1.0 4.5e-21 74.9 1.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|330507270|ref|YP_004383698.1| - 2.1e-14 52.8 0.1 3.4e-14 52.2 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|330507270|ref|YP_004383698.1| - 7.9e-06 26.8 0.1 1.2e-05 26.3 0.1 1.2 1 0 0 1 1 1 1 CS domain FKBP26_C PF18046.1 gi|330507270|ref|YP_004383698.1| - 0.026 14.6 0.2 4 7.6 0.0 2.3 2 0 0 2 2 2 0 FKBP26_C-terminal Ribo_biogen_C PF04034.13 gi|330507271|ref|YP_004383699.1| - 3.7e-46 156.0 0.0 4.5e-46 155.7 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|330507271|ref|YP_004383699.1| - 2.3e-12 46.5 0.0 3.5e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI tRNA-synt_1 PF00133.22 gi|330507272|ref|YP_004383700.1| - 2.9e-128 428.7 0.2 4.4e-127 424.8 0.2 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|330507272|ref|YP_004383700.1| - 5.7e-36 123.8 0.0 1.4e-35 122.5 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|330507272|ref|YP_004383700.1| - 1.2e-22 80.2 0.1 1.1e-13 50.7 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|330507272|ref|YP_004383700.1| - 2.5e-05 23.8 0.0 0.13 11.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|330507272|ref|YP_004383700.1| - 0.0016 18.0 0.0 0.0082 15.7 0.0 2.0 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 CYTH PF01928.21 gi|330507273|ref|YP_004383701.1| - 4.6e-34 117.9 3.0 5.2e-34 117.7 3.0 1.0 1 0 0 1 1 1 1 CYTH domain SPP PF06550.11 gi|330507274|ref|YP_004383702.1| - 1.3e-75 254.5 17.6 1.6e-75 254.2 17.6 1.1 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|330507274|ref|YP_004383702.1| - 6.8e-05 22.5 18.0 0.00075 19.1 18.0 2.4 1 1 0 1 1 1 1 Signal peptide peptidase Cytochrom_B_C PF00032.17 gi|330507274|ref|YP_004383702.1| - 2.4 8.5 10.1 0.11 12.8 2.0 2.5 1 1 2 3 3 3 0 Cytochrome b(C-terminal)/b6/petD Presenilin PF01080.17 gi|330507274|ref|YP_004383702.1| - 5.9 5.5 19.4 5.7 5.6 0.0 3.2 2 1 0 2 2 2 0 Presenilin Zn_Tnp_IS1595 PF12760.7 gi|330507275|ref|YP_004383703.1| - 0.00096 19.1 0.8 0.0015 18.5 0.8 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain RecR PF02132.15 gi|330507275|ref|YP_004383703.1| - 0.0036 16.8 1.9 0.86 9.2 0.1 2.2 2 0 0 2 2 2 2 RecR protein Cys_rich_KTR PF14205.6 gi|330507275|ref|YP_004383703.1| - 0.009 15.8 1.9 0.011 15.5 0.2 1.9 2 0 0 2 2 2 1 Cysteine-rich KTR DNA_ligase_ZBD PF03119.16 gi|330507275|ref|YP_004383703.1| - 0.065 13.3 1.8 0.11 12.5 1.8 1.4 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain A2L_zn_ribbon PF08792.10 gi|330507275|ref|YP_004383703.1| - 0.067 12.9 5.2 0.49 10.2 0.2 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|330507275|ref|YP_004383703.1| - 0.082 12.8 5.2 0.33 10.9 1.8 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Lon_2 PF13337.6 gi|330507275|ref|YP_004383703.1| - 0.084 11.4 0.0 0.089 11.3 0.0 1.0 1 0 0 1 1 1 0 Putative ATP-dependent Lon protease zf-Dof PF02701.15 gi|330507275|ref|YP_004383703.1| - 0.087 13.0 2.4 0.12 12.5 0.1 1.9 2 0 0 2 2 2 0 Dof domain, zinc finger Terminase_GpA PF05876.12 gi|330507275|ref|YP_004383703.1| - 0.1 11.1 1.8 0.12 10.9 1.8 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-NADH-PPase PF09297.11 gi|330507275|ref|YP_004383703.1| - 0.19 11.4 3.6 0.34 10.6 0.5 2.5 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|330507275|ref|YP_004383703.1| - 1 9.2 11.6 0.26 11.0 3.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|330507275|ref|YP_004383703.1| - 1.2 9.1 8.9 1.3 8.9 0.4 2.5 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) NOB1_Zn_bind PF08772.11 gi|330507275|ref|YP_004383703.1| - 7.6 6.8 7.8 2.1 8.5 2.1 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Hist_deacetyl PF00850.19 gi|330507276|ref|YP_004383704.1| - 6.6e-77 259.0 0.0 9.3e-77 258.5 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain DUF108 PF01958.18 gi|330507277|ref|YP_004383705.1| - 1e-32 112.4 0.2 1.9e-32 111.4 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|330507277|ref|YP_004383705.1| - 1e-20 74.5 1.7 1.5e-20 74.0 1.7 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|330507277|ref|YP_004383705.1| - 2.6e-08 34.0 0.3 4.8e-08 33.2 0.2 1.5 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 gi|330507277|ref|YP_004383705.1| - 5.3e-07 30.1 2.3 1.3e-06 28.9 2.3 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|330507277|ref|YP_004383705.1| - 1.6e-05 25.7 0.4 3.1e-05 24.8 0.4 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|330507277|ref|YP_004383705.1| - 0.00023 20.6 0.1 0.00035 20.0 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|330507277|ref|YP_004383705.1| - 0.00059 20.1 1.2 0.0013 18.9 1.1 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|330507277|ref|YP_004383705.1| - 0.0015 18.6 0.3 0.0029 17.7 0.3 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.24 gi|330507277|ref|YP_004383705.1| - 0.041 14.3 0.4 0.072 13.5 0.4 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ThiF PF00899.21 gi|330507277|ref|YP_004383705.1| - 0.049 13.0 2.2 0.36 10.1 2.2 2.1 1 1 0 1 1 1 0 ThiF family AKAP7_RIRII_bdg PF10470.9 gi|330507277|ref|YP_004383705.1| - 0.13 12.3 1.0 0.28 11.3 1.0 1.5 1 0 0 1 1 1 0 PKA-RI-RII subunit binding domain of A-kinase anchor protein QRPTase_C PF01729.19 gi|330507278|ref|YP_004383706.1| - 1.4e-56 190.9 0.0 5.5e-56 189.0 0.0 1.7 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|330507278|ref|YP_004383706.1| - 1.6e-20 72.9 0.0 3.8e-20 71.8 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain KDGP_aldolase PF07071.11 gi|330507278|ref|YP_004383706.1| - 0.0023 17.8 0.1 0.0055 16.5 0.1 1.6 1 0 0 1 1 1 1 KDGP aldolase Ribul_P_3_epim PF00834.19 gi|330507278|ref|YP_004383706.1| - 0.15 11.4 0.6 1.4 8.2 0.1 2.5 2 1 1 3 3 3 0 Ribulose-phosphate 3 epimerase family TRAP_beta PF05753.14 gi|330507279|ref|YP_004383707.1| - 9e-15 54.5 0.2 2.4e-11 43.3 0.1 2.5 2 1 0 2 2 2 2 Translocon-associated protein beta (TRAPB) DUF11 PF01345.18 gi|330507279|ref|YP_004383707.1| - 3.4e-10 40.1 0.0 1.4e-09 38.1 0.0 2.1 3 0 0 3 3 3 1 Domain of unknown function DUF11 CARDB PF07705.11 gi|330507279|ref|YP_004383707.1| - 1.2e-05 25.5 0.3 0.00027 21.1 0.1 2.7 3 1 0 3 3 3 1 CARDB BatD PF13584.6 gi|330507279|ref|YP_004383707.1| - 4.4e-05 22.5 2.9 0.00011 21.2 0.2 2.4 2 1 1 3 3 3 1 Oxygen tolerance NPCBM_assoc PF10633.9 gi|330507279|ref|YP_004383707.1| - 0.034 14.4 0.0 1.3 9.3 0.0 2.7 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Peptidase_A4 PF01828.17 gi|330507279|ref|YP_004383707.1| - 0.036 13.5 0.6 0.63 9.5 0.1 2.5 3 0 0 3 3 3 0 Peptidase A4 family YDG PF18657.1 gi|330507279|ref|YP_004383707.1| - 0.038 14.2 2.1 3.1 8.1 0.1 3.4 3 0 0 3 3 3 0 YDG domain BatA PF07584.11 gi|330507279|ref|YP_004383707.1| - 5.9 7.3 6.4 4.9 7.6 0.7 2.2 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal Tubulin PF00091.25 gi|330507280|ref|YP_004383708.1| - 3e-31 109.2 0.1 5.7e-31 108.3 0.0 1.5 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|330507280|ref|YP_004383708.1| - 1.1e-05 24.9 0.1 2.1e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 Tubulin like GXGXG PF01493.19 gi|330507281|ref|YP_004383709.1| - 3e-08 33.5 14.3 1.7e-06 27.8 4.1 2.9 2 2 0 2 2 2 2 GXGXG motif FapA PF03961.13 gi|330507281|ref|YP_004383709.1| - 8.6 4.8 6.4 12 4.4 0.2 2.2 2 0 0 2 2 2 0 Flagellar Assembly Protein A DUF373 PF04123.13 gi|330507282|ref|YP_004383710.1| - 3.7e-121 404.7 4.4 4.4e-121 404.4 4.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) MerC PF03203.14 gi|330507282|ref|YP_004383710.1| - 0.89 10.0 7.2 0.21 12.0 0.4 2.3 2 0 0 2 2 2 0 MerC mercury resistance protein ThiC_Rad_SAM PF01964.18 gi|330507284|ref|YP_004383712.1| - 2.2e-171 570.3 0.0 2.4e-171 570.1 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family EAP30 PF04157.16 gi|330507284|ref|YP_004383712.1| - 0.041 13.2 0.0 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family NIR_SIR PF01077.22 gi|330507285|ref|YP_004383713.1| - 2e-30 105.4 0.0 3.3e-30 104.7 0.0 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|330507285|ref|YP_004383713.1| - 1.3e-13 50.6 0.1 2.6e-13 49.6 0.0 1.5 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain 3HCDH PF00725.22 gi|330507285|ref|YP_004383713.1| - 0.14 12.8 0.0 0.27 11.9 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ChaB PF06150.12 gi|330507286|ref|YP_004383714.1| - 4.8e-20 71.9 1.1 6.5e-20 71.5 1.1 1.2 1 0 0 1 1 1 1 ChaB TAtT PF16811.5 gi|330507286|ref|YP_004383714.1| - 0.062 12.6 0.1 0.064 12.5 0.1 1.1 1 0 0 1 1 1 0 TRAP transporter T-component GSAP-16 PF14959.6 gi|330507287|ref|YP_004383715.1| - 0.048 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 gamma-Secretase-activating protein C-term LTD PF00932.19 gi|330507288|ref|YP_004383716.1| - 3.3e-12 46.7 0.0 5.4e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Lamin Tail Domain LTD PF00932.19 gi|330507289|ref|YP_004383717.1| - 5.9e-13 49.2 0.1 9.4e-13 48.5 0.1 1.3 1 0 0 1 1 1 1 Lamin Tail Domain CARDB PF07705.11 gi|330507290|ref|YP_004383718.1| - 4.5e-48 161.7 0.0 6.2e-10 39.2 0.0 4.1 4 0 0 4 4 4 4 CARDB TRAP_beta PF05753.14 gi|330507290|ref|YP_004383718.1| - 2.8e-05 23.6 0.0 16 4.9 0.0 4.1 4 0 0 4 4 4 4 Translocon-associated protein beta (TRAPB) YkyB PF14177.6 gi|330507290|ref|YP_004383718.1| - 0.011 16.0 0.0 1.3e+02 2.8 0.0 4.0 4 0 0 4 4 4 0 YkyB-like protein BAGE PF08180.11 gi|330507291|ref|YP_004383719.1| - 0.054 13.6 0.8 0.11 12.6 0.8 1.5 1 0 0 1 1 1 0 B melanoma antigen family tRNA-synt_1d PF00750.19 gi|330507292|ref|YP_004383720.1| - 3.1e-38 131.6 0.1 4.1e-38 131.2 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|330507292|ref|YP_004383720.1| - 4e-29 101.2 1.3 4e-29 101.2 1.3 2.3 3 0 0 3 3 3 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|330507292|ref|YP_004383720.1| - 4.5e-12 46.4 0.0 1.7e-11 44.5 0.0 2.1 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|330507292|ref|YP_004383720.1| - 7.8e-08 31.6 0.0 0.00029 19.9 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|330507292|ref|YP_004383720.1| - 0.0019 17.0 0.1 0.71 8.6 0.1 3.0 3 0 0 3 3 3 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|330507292|ref|YP_004383720.1| - 0.096 10.9 0.0 0.17 10.1 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) SHMT PF00464.19 gi|330507292|ref|YP_004383720.1| - 0.11 11.1 0.0 0.18 10.4 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase DDE_Tnp_IS66 PF03050.14 gi|330507293|ref|YP_004383721.1| - 2.3e-06 27.3 1.3 6e-05 22.7 1.3 2.1 1 1 0 1 1 1 1 Transposase IS66 family SF-assemblin PF06705.11 gi|330507293|ref|YP_004383721.1| - 0.033 13.5 2.4 0.06 12.7 2.4 1.4 1 0 0 1 1 1 0 SF-assemblin/beta giardin Zn-ribbon_8 PF09723.10 gi|330507293|ref|YP_004383721.1| - 0.15 12.2 0.9 7.5 6.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain YhfH PF14149.6 gi|330507293|ref|YP_004383721.1| - 0.16 11.9 1.1 7.3 6.7 0.3 2.6 2 0 0 2 2 2 0 YhfH-like protein DZR PF12773.7 gi|330507293|ref|YP_004383721.1| - 0.22 11.6 2.9 0.78 9.8 2.8 1.8 1 1 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.6 gi|330507293|ref|YP_004383721.1| - 1.8 9.1 7.4 0.23 12.0 2.6 2.1 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain TF_Zn_Ribbon PF08271.12 gi|330507293|ref|YP_004383721.1| - 3.1 7.4 4.8 38 3.9 4.8 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|330507293|ref|YP_004383721.1| - 8.5 6.1 8.7 5.9 6.6 0.1 2.7 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF4139 PF13598.6 gi|330507294|ref|YP_004383722.1| - 8.3e-16 58.3 0.2 1.3e-15 57.6 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4139) DUF4897 PF16238.5 gi|330507294|ref|YP_004383722.1| - 0.033 14.0 0.1 0.088 12.6 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) Top6b_C PF18000.1 gi|330507294|ref|YP_004383722.1| - 0.11 12.7 0.2 0.23 11.6 0.2 1.6 1 0 0 1 1 1 0 Type 2 DNA topoisomerase 6 subunit B C-terminal domain DUF92 PF01940.16 gi|330507295|ref|YP_004383723.1| - 0.013 15.0 3.0 0.014 14.8 3.0 1.1 1 0 0 1 1 1 0 Integral membrane protein DUF92 NPR2 PF06218.11 gi|330507296|ref|YP_004383724.1| - 0.0042 15.9 0.0 0.0045 15.8 0.0 1.0 1 0 0 1 1 1 1 Nitrogen permease regulator 2 APP_E2 PF12925.7 gi|330507298|ref|YP_004383726.1| - 0.03 14.0 0.0 0.031 14.0 0.0 1.0 1 0 0 1 1 1 0 E2 domain of amyloid precursor protein YafQ_toxin PF15738.5 gi|330507299|ref|YP_004383727.1| - 1.1e-09 38.5 0.0 1.2e-09 38.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 gi|330507299|ref|YP_004383727.1| - 3e-05 24.5 0.0 3.2e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|330507299|ref|YP_004383727.1| - 0.003 17.5 0.0 0.0038 17.1 0.0 1.2 1 0 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system YoeB_toxin PF06769.14 gi|330507299|ref|YP_004383727.1| - 0.012 15.6 0.0 0.016 15.2 0.0 1.3 1 1 0 1 1 1 0 YoeB-like toxin of bacterial type II toxin-antitoxin system DUF4139 PF13598.6 gi|330507300|ref|YP_004383728.1| - 2e-14 53.8 2.3 4.6e-14 52.6 2.3 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4139) DUF11 PF01345.18 gi|330507300|ref|YP_004383728.1| - 0.0031 17.8 0.7 0.081 13.2 0.1 2.8 3 0 0 3 3 3 1 Domain of unknown function DUF11 DUF4897 PF16238.5 gi|330507300|ref|YP_004383728.1| - 0.0055 16.6 0.1 0.016 15.1 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4897) Top6b_C PF18000.1 gi|330507300|ref|YP_004383728.1| - 0.0081 16.3 0.3 0.02 15.1 0.3 1.7 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HSP20 PF00011.21 gi|330507301|ref|YP_004383729.1| - 6.3e-13 48.7 0.1 8.7e-13 48.3 0.1 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|330507301|ref|YP_004383729.1| - 4.9e-11 42.0 0.1 7e-11 41.5 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|330507301|ref|YP_004383729.1| - 0.047 14.7 0.0 0.081 13.9 0.0 1.4 1 0 0 1 1 1 0 CS domain Amidohydro_1 PF01979.20 gi|330507302|ref|YP_004383730.1| - 3.4e-24 85.8 0.0 4.8e-24 85.3 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|330507302|ref|YP_004383730.1| - 2.1e-16 60.4 0.2 1e-08 35.1 0.1 2.3 2 0 0 2 2 2 2 Amidohydrolase family Adenosine_kin PF04008.14 gi|330507303|ref|YP_004383731.1| - 5.2e-71 237.4 0.0 5.9e-71 237.3 0.0 1.0 1 0 0 1 1 1 1 Adenosine specific kinase RseC_MucC PF04246.12 gi|330507304|ref|YP_004383732.1| - 1.4 8.9 3.7 1.8 8.5 3.7 1.3 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF2070 PF09843.9 gi|330507304|ref|YP_004383732.1| - 3.9 5.6 7.0 4.2 5.5 7.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4013 PF13197.6 gi|330507305|ref|YP_004383733.1| - 0.42 10.4 34.2 1 9.2 11.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF4013) UPF0259 PF06790.11 gi|330507305|ref|YP_004383733.1| - 2.9 7.6 24.8 0.019 14.8 10.5 2.5 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0259) Saccharop_dh_N PF04455.12 gi|330507306|ref|YP_004383734.1| - 4.9e-35 119.9 0.1 8.9e-35 119.1 0.1 1.4 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|330507306|ref|YP_004383734.1| - 0.00067 19.4 0.2 0.0041 16.9 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DUF5403 PF17395.2 gi|330507306|ref|YP_004383734.1| - 0.017 15.4 0.1 0.039 14.2 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5403) DS PF01916.17 gi|330507306|ref|YP_004383734.1| - 0.074 12.3 0.0 0.24 10.6 0.0 1.8 1 1 1 2 2 2 0 Deoxyhypusine synthase Ectoine_synth PF06339.12 gi|330507307|ref|YP_004383735.1| - 2.8e-55 185.9 0.0 9.7e-31 106.6 0.0 2.0 1 1 1 2 2 2 2 Ectoine synthase Cupin_2 PF07883.11 gi|330507307|ref|YP_004383735.1| - 0.0034 17.1 0.3 0.2 11.4 0.3 2.3 1 1 0 1 1 1 1 Cupin domain Aminotran_3 PF00202.21 gi|330507308|ref|YP_004383736.1| - 1.8e-79 267.3 0.0 2.2e-79 267.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|330507308|ref|YP_004383736.1| - 0.047 13.0 0.0 0.074 12.3 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase DUF1263 PF06882.12 gi|330507308|ref|YP_004383736.1| - 0.12 12.5 0.1 0.88 9.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1263) Acetyltransf_1 PF00583.25 gi|330507309|ref|YP_004383737.1| - 1.6e-11 44.4 0.0 2.3e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|330507309|ref|YP_004383737.1| - 1.9e-05 25.0 0.0 2.9e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|330507309|ref|YP_004383737.1| - 0.002 18.1 0.0 0.0028 17.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|330507309|ref|YP_004383737.1| - 0.0034 18.0 0.0 0.0044 17.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Tautomerase_2 PF14552.6 gi|330507309|ref|YP_004383737.1| - 0.032 14.3 0.0 0.057 13.5 0.0 1.3 1 0 0 1 1 1 0 Tautomerase enzyme Acetyltransf_9 PF13527.7 gi|330507309|ref|YP_004383737.1| - 0.058 13.5 0.0 0.22 11.6 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain AroM PF07302.11 gi|330507310|ref|YP_004383738.1| - 0.035 13.5 0.0 0.14 11.5 0.0 2.0 2 0 0 2 2 2 0 AroM protein PUA PF01472.20 gi|330507311|ref|YP_004383739.1| - 4.3e-17 61.8 1.3 6.6e-17 61.2 1.3 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|330507311|ref|YP_004383739.1| - 0.00019 21.6 0.0 0.00031 21.0 0.0 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain FliO PF04347.13 gi|330507311|ref|YP_004383739.1| - 0.042 14.1 0.0 0.094 13.0 0.0 1.5 1 0 0 1 1 1 0 Flagellar biosynthesis protein, FliO Pre-PUA PF17832.1 gi|330507311|ref|YP_004383739.1| - 0.13 12.9 0.0 1 10.1 0.0 2.1 1 1 0 1 1 1 0 Pre-PUA-like domain LSM PF01423.22 gi|330507312|ref|YP_004383740.1| - 2.3e-21 75.2 0.2 2.6e-21 75.1 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|330507312|ref|YP_004383740.1| - 0.016 15.4 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain Tudor_2 PF18104.1 gi|330507312|ref|YP_004383740.1| - 0.12 12.1 0.1 0.29 10.8 0.0 1.6 2 0 0 2 2 2 0 Jumonji domain-containing protein 2A Tudor domain Ribosomal_L37e PF01907.19 gi|330507313|ref|YP_004383741.1| - 2.7e-22 78.7 8.8 2.9e-22 78.5 8.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e Zn_ribbon_SprT PF17283.2 gi|330507313|ref|YP_004383741.1| - 0.0022 17.9 2.3 0.14 12.1 0.6 2.1 2 0 0 2 2 2 2 SprT-like zinc ribbon domain zf-piccolo PF05715.13 gi|330507313|ref|YP_004383741.1| - 0.0094 16.1 2.0 0.021 15.0 2.0 1.6 1 1 0 1 1 1 1 Piccolo Zn-finger zn-ribbon_14 PF16503.5 gi|330507313|ref|YP_004383741.1| - 0.017 14.6 2.7 0.34 10.4 0.3 2.3 2 0 0 2 2 2 0 Zinc-ribbon DZR PF12773.7 gi|330507313|ref|YP_004383741.1| - 0.018 15.0 0.9 0.025 14.6 0.9 1.2 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|330507313|ref|YP_004383741.1| - 0.1 12.8 3.1 0.14 12.3 2.0 1.7 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) MraY_sig1 PF10555.9 gi|330507313|ref|YP_004383741.1| - 0.24 11.0 1.3 0.36 10.4 1.3 1.3 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 zf-RRN7 PF11781.8 gi|330507313|ref|YP_004383741.1| - 0.3 10.8 4.6 5.1 6.9 0.5 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin_2 PF18073.1 gi|330507313|ref|YP_004383741.1| - 1.7 8.4 8.9 8.4 6.2 0.3 2.7 2 1 0 2 2 2 0 Rubredoxin metal binding domain GATase_6 PF13522.6 gi|330507314|ref|YP_004383742.1| - 1.4e-22 80.3 0.0 1.7e-21 76.8 0.0 2.3 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|330507314|ref|YP_004383742.1| - 1.4e-20 73.4 0.0 2.6e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|330507314|ref|YP_004383742.1| - 2.2e-07 30.1 0.0 6.6e-06 25.2 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|330507314|ref|YP_004383742.1| - 7.5e-06 25.6 0.0 1.2e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_2 PF00310.21 gi|330507314|ref|YP_004383742.1| - 0.1 11.3 0.1 3.4 6.3 0.0 2.3 2 0 0 2 2 2 0 Glutamine amidotransferases class-II MFS_1 PF07690.16 gi|330507315|ref|YP_004383743.1| - 4.6e-29 101.5 91.1 7.1e-23 81.1 54.0 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily FtsX PF02687.21 gi|330507315|ref|YP_004383743.1| - 0.028 14.9 5.1 0.028 14.9 5.1 6.1 5 2 0 5 5 5 0 FtsX-like permease family GPI2 PF06432.11 gi|330507315|ref|YP_004383743.1| - 0.038 13.4 1.2 2.7 7.4 0.0 2.9 1 1 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase Hexapep PF00132.24 gi|330507316|ref|YP_004383744.1| - 2.7e-14 52.2 8.8 1.4e-05 24.6 1.1 4.3 2 2 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|330507316|ref|YP_004383744.1| - 1e-09 38.0 11.5 0.038 13.7 0.1 4.7 3 2 1 4 4 4 4 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|330507316|ref|YP_004383744.1| - 0.12 12.7 1.3 0.78 10.1 1.0 2.2 1 1 0 1 1 1 0 Polymer-forming cytoskeletal Gp138_N PF18352.1 gi|330507316|ref|YP_004383744.1| - 0.12 12.4 0.1 0.64 10.1 0.0 2.2 2 1 0 2 2 2 0 Phage protein Gp138 N-terminal domain Semialdhyde_dhC PF02774.18 gi|330507317|ref|YP_004383745.1| - 1.9e-38 132.4 0.0 3e-38 131.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|330507317|ref|YP_004383745.1| - 1.3e-32 112.8 0.0 1.9e-32 112.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.20 gi|330507317|ref|YP_004383745.1| - 0.031 13.9 0.0 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|330507317|ref|YP_004383745.1| - 0.068 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus MIase PF02426.16 gi|330507317|ref|YP_004383745.1| - 0.072 13.3 0.3 2.3 8.4 0.0 2.3 2 0 0 2 2 2 0 Muconolactone delta-isomerase DXP_reductoisom PF02670.16 gi|330507317|ref|YP_004383745.1| - 0.087 13.5 0.0 0.16 12.7 0.0 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.6 gi|330507317|ref|YP_004383745.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding Radical_SAM PF04055.21 gi|330507318|ref|YP_004383746.1| - 1.7e-21 77.3 0.0 2.3e-21 76.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|330507318|ref|YP_004383746.1| - 2.6e-10 40.7 0.8 5.4e-10 39.7 0.8 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|330507318|ref|YP_004383746.1| - 2e-08 34.6 0.0 4.5e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330507318|ref|YP_004383746.1| - 3.5e-06 27.2 0.3 8.7e-06 25.9 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain AsnC_trans_reg2 PF17805.1 gi|330507319|ref|YP_004383747.1| - 3.5e-18 65.5 0.0 4.9e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|330507319|ref|YP_004383747.1| - 2.8e-06 27.1 0.0 1.7e-05 24.5 0.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain DDRGK PF09756.9 gi|330507319|ref|YP_004383747.1| - 0.036 13.6 0.1 0.1 12.2 0.1 1.7 1 1 0 1 1 1 0 DDRGK domain Thioredoxin PF00085.20 gi|330507320|ref|YP_004383748.1| - 1.6e-20 73.0 0.0 1.7e-20 72.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|330507320|ref|YP_004383748.1| - 1.3e-06 28.8 0.1 1.4e-05 25.4 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|330507320|ref|YP_004383748.1| - 0.00046 20.5 0.0 0.00077 19.7 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.21 gi|330507320|ref|YP_004383748.1| - 0.0025 17.7 0.0 0.0034 17.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_3 PF13192.6 gi|330507320|ref|YP_004383748.1| - 0.0053 16.8 0.0 0.0069 16.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.6 gi|330507320|ref|YP_004383748.1| - 0.0061 16.7 0.0 0.0085 16.3 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.10 gi|330507320|ref|YP_004383748.1| - 0.0077 15.9 0.0 0.0083 15.8 0.0 1.3 1 0 0 1 1 1 1 Redoxin TraF PF13728.6 gi|330507320|ref|YP_004383748.1| - 0.044 13.6 0.0 0.051 13.4 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|330507320|ref|YP_004383748.1| - 0.048 13.4 0.1 0.067 13.0 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin Lactamase_B_2 PF12706.7 gi|330507321|ref|YP_004383749.1| - 2e-05 24.2 0.5 6.1e-05 22.6 0.1 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|330507321|ref|YP_004383749.1| - 7e-05 22.7 0.0 0.00019 21.3 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_3 PF13483.6 gi|330507321|ref|YP_004383749.1| - 0.003 17.5 0.1 0.0069 16.3 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|330507321|ref|YP_004383749.1| - 0.042 13.8 4.7 0.27 11.2 4.2 2.5 2 1 0 3 3 3 0 Metallo-beta-lactamase superfamily Vasculin PF15337.6 gi|330507321|ref|YP_004383749.1| - 0.094 13.6 0.0 0.17 12.7 0.0 1.3 1 0 0 1 1 1 0 Vascular protein family Vasculin-like 1 PDEase_II PF02112.15 gi|330507321|ref|YP_004383749.1| - 0.16 11.0 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II Glycos_transf_2 PF00535.26 gi|330507322|ref|YP_004383750.1| - 1.5e-23 83.4 0.0 2e-23 83.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330507322|ref|YP_004383750.1| - 0.0013 18.7 0.1 0.0028 17.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 G0-G1_switch_2 PF15103.6 gi|330507322|ref|YP_004383750.1| - 0.032 14.6 0.1 0.056 13.9 0.1 1.4 1 0 0 1 1 1 0 G0/G1 switch protein 2 Glyco_tranf_2_2 PF10111.9 gi|330507322|ref|YP_004383750.1| - 0.051 13.0 0.0 0.077 12.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 RseC_MucC PF04246.12 gi|330507322|ref|YP_004383750.1| - 0.089 12.8 1.2 0.18 11.7 0.8 1.7 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Glyco_tranf_2_4 PF13704.6 gi|330507322|ref|YP_004383750.1| - 0.14 12.6 0.0 0.23 12.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 LapA_dom PF06305.11 gi|330507322|ref|YP_004383750.1| - 0.63 9.9 3.9 0.56 10.0 2.7 1.6 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain DUF373 PF04123.13 gi|330507322|ref|YP_004383750.1| - 2 7.8 6.9 0.41 10.1 2.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF373) Transp_cyt_pur PF02133.15 gi|330507322|ref|YP_004383750.1| - 2.1 7.0 5.3 2.9 6.6 5.3 1.1 1 0 0 1 1 1 0 Permease for cytosine/purines, uracil, thiamine, allantoin Glycos_transf_2 PF00535.26 gi|330507323|ref|YP_004383751.1| - 1.9e-29 102.7 0.0 2.6e-29 102.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330507323|ref|YP_004383751.1| - 4.5e-19 69.2 0.0 7.5e-19 68.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|330507323|ref|YP_004383751.1| - 5.3e-07 29.4 0.5 7.8e-06 25.6 0.5 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|330507323|ref|YP_004383751.1| - 2.7e-05 24.2 0.0 4.3e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.6 gi|330507323|ref|YP_004383751.1| - 0.0017 18.1 0.3 0.058 13.1 0.1 2.8 2 1 0 2 2 2 1 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.6 gi|330507323|ref|YP_004383751.1| - 0.0021 18.5 0.0 0.011 16.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_7C PF02709.14 gi|330507323|ref|YP_004383751.1| - 0.0027 17.3 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_transf_21 PF13506.6 gi|330507323|ref|YP_004383751.1| - 0.0097 15.4 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 DUF5438 PF17506.2 gi|330507324|ref|YP_004383752.1| - 0.12 12.7 3.7 0.4 11.0 0.6 3.2 3 0 0 3 3 3 0 Family of unknown function (DUF5438) GDP_Man_Dehyd PF16363.5 gi|330507325|ref|YP_004383753.1| - 2.8e-69 234.1 0.0 3.2e-69 233.9 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|330507325|ref|YP_004383753.1| - 5.7e-52 176.6 0.0 6.7e-52 176.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|330507325|ref|YP_004383753.1| - 3.5e-21 75.4 0.0 4.7e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|330507325|ref|YP_004383753.1| - 1.1e-14 54.2 0.0 4e-14 52.4 0.0 1.7 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|330507325|ref|YP_004383753.1| - 2.2e-11 43.4 0.1 6.1e-10 38.7 0.1 2.6 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|330507325|ref|YP_004383753.1| - 1e-09 38.5 0.0 2.1e-09 37.5 0.0 1.5 2 0 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 gi|330507325|ref|YP_004383753.1| - 2.6e-06 27.2 0.0 3.9e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|330507325|ref|YP_004383753.1| - 7.2e-06 25.6 0.0 0.0066 15.9 0.0 2.8 3 0 0 3 3 3 2 short chain dehydrogenase RmlD_sub_bind PF04321.17 gi|330507325|ref|YP_004383753.1| - 7.8e-06 25.2 0.0 1.1e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NTP_transferase PF00483.23 gi|330507326|ref|YP_004383754.1| - 2e-44 152.0 0.0 2.3e-44 151.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|330507326|ref|YP_004383754.1| - 5e-10 40.0 0.0 5.6e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain MSP1_C PF07462.11 gi|330507326|ref|YP_004383754.1| - 0.11 11.2 0.1 0.16 10.6 0.1 1.2 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus Epimerase PF01370.21 gi|330507327|ref|YP_004383755.1| - 3e-52 177.5 0.0 3.7e-52 177.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|330507327|ref|YP_004383755.1| - 6.3e-50 170.4 0.1 5.3e-47 160.8 0.1 2.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|330507327|ref|YP_004383755.1| - 7.1e-23 81.0 0.3 7.7e-21 74.3 0.1 2.3 2 1 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|330507327|ref|YP_004383755.1| - 9.8e-20 70.8 0.0 5.3e-16 58.6 0.0 2.5 1 1 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|330507327|ref|YP_004383755.1| - 1.7e-19 70.0 0.0 2.2e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|330507327|ref|YP_004383755.1| - 3.1e-18 65.9 0.0 1.5e-16 60.4 0.0 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|330507327|ref|YP_004383755.1| - 0.00054 19.9 0.0 0.00078 19.4 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding DUF2362 PF10154.9 gi|330507327|ref|YP_004383755.1| - 0.071 12.0 0.1 0.1 11.5 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2362) adh_short PF00106.25 gi|330507327|ref|YP_004383755.1| - 0.18 11.2 0.2 2.9 7.3 0.1 2.3 1 1 1 2 2 2 0 short chain dehydrogenase Alg14 PF08660.11 gi|330507328|ref|YP_004383756.1| - 3.4e-22 79.2 0.1 8.1e-20 71.5 0.0 2.1 1 1 1 2 2 2 2 Oligosaccharide biosynthesis protein Alg14 like Glyco_transf_4 PF13439.6 gi|330507328|ref|YP_004383756.1| - 0.022 14.8 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|330507328|ref|YP_004383756.1| - 0.057 13.4 0.1 0.073 13.1 0.1 1.1 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glyco_transf_28 PF03033.20 gi|330507328|ref|YP_004383756.1| - 0.069 13.2 0.0 0.15 12.1 0.0 1.7 1 1 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_4 PF13579.6 gi|330507328|ref|YP_004383756.1| - 0.08 13.4 0.0 0.096 13.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_tran_28_C PF04101.16 gi|330507329|ref|YP_004383757.1| - 3.5e-09 36.9 0.0 6.5e-09 36.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_hydro_114 PF03537.13 gi|330507329|ref|YP_004383757.1| - 0.12 11.7 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Glycoside-hydrolase family GH114 Glycos_transf_1 PF00534.20 gi|330507330|ref|YP_004383758.1| - 2.4e-36 124.9 0.0 4.1e-36 124.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330507330|ref|YP_004383758.1| - 2.5e-24 86.2 0.0 6.6e-24 84.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330507330|ref|YP_004383758.1| - 7.8e-15 55.3 0.1 1.8e-14 54.1 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|330507330|ref|YP_004383758.1| - 2.2e-10 41.2 0.0 3.9e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|330507330|ref|YP_004383758.1| - 4.2e-07 30.1 0.0 9.6e-07 28.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|330507330|ref|YP_004383758.1| - 1.8e-06 28.2 0.0 4.2e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Transthyretin PF00576.21 gi|330507330|ref|YP_004383758.1| - 0.076 13.7 0.2 0.15 12.8 0.2 1.4 1 0 0 1 1 1 0 HIUase/Transthyretin family Asn_synthase PF00733.21 gi|330507331|ref|YP_004383759.1| - 5.6e-69 233.5 0.0 7.1e-69 233.1 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|330507331|ref|YP_004383759.1| - 2.8e-45 153.2 0.0 5.3e-45 152.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|330507331|ref|YP_004383759.1| - 5.9e-43 146.3 0.0 1e-42 145.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|330507331|ref|YP_004383759.1| - 9.3e-07 28.5 0.1 1.7e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Aluminium induced protein QueC PF06508.13 gi|330507331|ref|YP_004383759.1| - 0.04 13.4 0.0 0.089 12.3 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|330507331|ref|YP_004383759.1| - 0.13 11.4 0.0 0.26 10.4 0.0 1.4 1 0 0 1 1 1 0 NAD synthase Pectate_lyase_3 PF12708.7 gi|330507332|ref|YP_004383760.1| - 3.9e-09 36.7 1.1 2.9e-08 33.8 0.7 2.1 2 0 0 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|330507332|ref|YP_004383760.1| - 0.0013 18.6 6.7 0.0013 18.6 6.7 3.2 2 1 1 3 3 3 1 Right handed beta helix region NosD PF05048.13 gi|330507332|ref|YP_004383760.1| - 0.0027 17.0 5.2 0.068 12.4 0.6 3.0 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Adeno_E1B_55K PF01696.17 gi|330507332|ref|YP_004383760.1| - 0.045 12.4 0.1 0.23 10.1 0.1 2.1 1 1 0 1 1 1 0 Adenovirus EB1 55K protein / large t-antigen Polysacc_synt_C PF14667.6 gi|330507333|ref|YP_004383761.1| - 6.1e-05 23.1 6.8 6.1e-05 23.1 6.8 4.0 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|330507333|ref|YP_004383761.1| - 0.00013 21.5 20.2 0.00013 21.5 20.2 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein LVIVD PF08309.11 gi|330507333|ref|YP_004383761.1| - 0.014 14.7 0.0 0.038 13.3 0.0 1.7 1 0 0 1 1 1 0 LVIVD repeat DUF1449 PF07290.11 gi|330507333|ref|YP_004383761.1| - 0.094 12.3 3.9 4.1 7.0 0.3 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1449) GATase PF00117.28 gi|330507335|ref|YP_004383763.1| - 1.1e-15 57.9 0.0 1.4e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|330507335|ref|YP_004383763.1| - 0.0001 22.2 0.0 0.00019 21.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|330507335|ref|YP_004383763.1| - 0.01 15.6 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family GATase_3 PF07685.14 gi|330507335|ref|YP_004383763.1| - 0.034 13.7 0.0 0.048 13.2 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain UPF0146 PF03686.13 gi|330507336|ref|YP_004383764.1| - 6.3e-34 116.6 0.0 7.6e-34 116.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) ADP_PFK_GK PF04587.15 gi|330507336|ref|YP_004383764.1| - 0.11 11.0 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 ADP-specific Phosphofructokinase/Glucokinase conserved region Tubulin PF00091.25 gi|330507337|ref|YP_004383765.1| - 3.6e-36 125.2 1.5 1.2e-35 123.6 1.5 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|330507337|ref|YP_004383765.1| - 4.5e-28 97.4 0.0 1.4e-27 95.9 0.0 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain YjeF_N PF03853.15 gi|330507337|ref|YP_004383765.1| - 0.0045 16.9 0.0 0.0082 16.0 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus Tubulin_2 PF13809.6 gi|330507337|ref|YP_004383765.1| - 0.026 13.7 10.2 0.54 9.4 2.5 2.5 1 1 0 2 2 2 0 Tubulin like Methyltransf_15 PF09445.10 gi|330507337|ref|YP_004383765.1| - 0.028 14.0 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TrkA_N PF02254.18 gi|330507337|ref|YP_004383765.1| - 0.064 13.5 0.1 0.22 11.8 0.1 1.9 1 0 0 1 1 1 0 TrkA-N domain ThiF PF00899.21 gi|330507337|ref|YP_004383765.1| - 0.095 12.0 0.1 0.2 11.0 0.1 1.5 1 0 0 1 1 1 0 ThiF family AlaDh_PNT_C PF01262.21 gi|330507337|ref|YP_004383765.1| - 0.14 11.5 1.5 0.17 11.1 0.1 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain UbiD PF01977.16 gi|330507338|ref|YP_004383766.1| - 1.3e-94 317.4 0.1 1.5e-94 317.2 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF1614 PF07758.11 gi|330507339|ref|YP_004383767.1| - 1.5e-55 187.8 12.0 1.5e-55 187.8 12.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DUF4229 PF14012.6 gi|330507339|ref|YP_004383767.1| - 0.0041 17.2 1.8 0.0041 17.2 1.8 3.7 3 1 1 4 4 4 1 Protein of unknown function (DUF4229) DHQS PF01959.16 gi|330507340|ref|YP_004383768.1| - 3.1e-143 476.9 0.7 3.5e-143 476.8 0.7 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II OapA PF04225.12 gi|330507340|ref|YP_004383768.1| - 0.0002 21.4 0.0 0.41 10.8 0.0 2.7 1 1 1 2 2 2 2 Opacity-associated protein A LysM-like domain TOBE_2 PF08402.10 gi|330507340|ref|YP_004383768.1| - 0.063 13.5 0.3 9.2 6.5 0.1 3.2 3 0 0 3 3 3 0 TOBE domain DHquinase_I PF01487.15 gi|330507341|ref|YP_004383769.1| - 4.4e-47 161.2 0.1 5e-47 161.1 0.1 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase HlyD_D4 PF16572.5 gi|330507341|ref|YP_004383769.1| - 0.033 14.0 2.3 2.1 8.2 0.2 2.6 2 0 0 2 2 2 0 Long alpha hairpin domain of cation efflux system protein, CusB Radical_SAM PF04055.21 gi|330507342|ref|YP_004383770.1| - 1.8e-08 35.0 13.1 2.8e-06 27.8 8.5 4.3 2 2 1 3 3 3 2 Radical SAM superfamily Radical_SAM PF04055.21 gi|330507344|ref|YP_004383772.1| - 6.2e-19 69.0 0.1 2.4e-17 63.8 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|330507344|ref|YP_004383772.1| - 3.9e-11 43.0 0.0 7.1e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain LPD30 PF18850.1 gi|330507344|ref|YP_004383772.1| - 0.062 13.1 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Large polyvalent protein associated domain 30 DUF3786 PF12654.7 gi|330507346|ref|YP_004383774.1| - 0.0066 16.1 0.0 0.0067 16.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3786) DUF4263 PF14082.6 gi|330507347|ref|YP_004383775.1| - 1.1e-08 35.5 0.0 2.8e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4263) Adenine_deam_C PF13382.6 gi|330507348|ref|YP_004383776.1| - 4.3e-68 227.9 0.1 8.7e-68 226.9 0.1 1.5 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|330507348|ref|YP_004383776.1| - 2.3e-27 96.2 0.0 1.5e-25 90.3 0.0 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|330507348|ref|YP_004383776.1| - 8.5e-11 42.0 0.0 0.0001 22.0 0.0 2.5 2 0 0 2 2 2 2 Amidohydrolase family AAA PF00004.29 gi|330507349|ref|YP_004383777.1| - 1.7e-98 326.2 0.0 7e-50 168.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|330507349|ref|YP_004383777.1| - 1.6e-32 111.0 0.8 7.9e-17 60.8 0.2 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|330507349|ref|YP_004383777.1| - 1.4e-31 108.5 0.0 9.3e-31 105.9 0.0 2.5 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|330507349|ref|YP_004383777.1| - 1.8e-16 60.3 0.0 1.3e-07 31.5 0.0 3.6 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|330507349|ref|YP_004383777.1| - 4.6e-14 51.9 0.0 3.1e-13 49.3 0.1 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|330507349|ref|YP_004383777.1| - 8.8e-14 52.0 0.0 1.6e-06 28.4 0.0 3.0 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|330507349|ref|YP_004383777.1| - 1.9e-13 51.2 0.0 2.5e-05 24.7 0.0 3.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_5 PF07728.14 gi|330507349|ref|YP_004383777.1| - 1.3e-12 47.9 0.3 4.2e-05 23.6 0.0 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|330507349|ref|YP_004383777.1| - 7.5e-12 45.1 0.0 4.1e-05 23.0 0.0 2.7 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|330507349|ref|YP_004383777.1| - 4.8e-11 43.1 1.9 0.0081 16.4 0.0 4.6 3 2 2 5 5 5 2 AAA domain AAA_14 PF13173.6 gi|330507349|ref|YP_004383777.1| - 8e-10 38.9 0.0 0.00016 21.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|330507349|ref|YP_004383777.1| - 2.5e-09 37.7 0.2 0.0043 17.6 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.6 gi|330507349|ref|YP_004383777.1| - 3.2e-09 37.1 0.0 0.00057 20.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|330507349|ref|YP_004383777.1| - 1.2e-07 31.4 0.0 0.0089 15.4 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|330507349|ref|YP_004383777.1| - 2.3e-07 30.7 0.0 0.02 14.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.6 gi|330507349|ref|YP_004383777.1| - 3.7e-07 29.9 0.6 0.0065 16.1 0.0 3.7 3 1 0 3 3 3 2 AAA domain AAA_7 PF12775.7 gi|330507349|ref|YP_004383777.1| - 4.4e-07 29.6 0.0 0.03 13.8 0.0 2.6 2 0 0 2 2 2 2 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|330507349|ref|YP_004383777.1| - 8.3e-07 28.9 0.1 0.14 11.8 0.0 3.5 3 1 0 3 3 2 2 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|330507349|ref|YP_004383777.1| - 1.4e-06 27.7 0.1 0.04 13.2 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin ATPase PF06745.13 gi|330507349|ref|YP_004383777.1| - 2.1e-06 27.3 5.6 0.33 10.3 0.1 4.3 2 2 2 4 4 4 2 KaiC AAA_24 PF13479.6 gi|330507349|ref|YP_004383777.1| - 2.1e-06 27.6 0.1 0.1 12.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|330507349|ref|YP_004383777.1| - 2.5e-06 27.8 0.0 0.027 14.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|330507349|ref|YP_004383777.1| - 3.6e-06 27.3 0.0 0.12 12.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Parvo_NS1 PF01057.17 gi|330507349|ref|YP_004383777.1| - 6.5e-06 25.4 0.2 0.057 12.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|330507349|ref|YP_004383777.1| - 1.5e-05 25.0 0.0 0.23 11.5 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_17 PF13207.6 gi|330507349|ref|YP_004383777.1| - 3.4e-05 24.3 0.0 0.54 10.7 0.0 3.4 3 0 0 3 3 2 2 AAA domain ABC_tran PF00005.27 gi|330507349|ref|YP_004383777.1| - 3.9e-05 24.2 0.0 0.22 12.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.11 gi|330507349|ref|YP_004383777.1| - 5.1e-05 23.1 0.0 0.26 11.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|330507349|ref|YP_004383777.1| - 5.6e-05 22.4 0.0 0.32 10.1 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|330507349|ref|YP_004383777.1| - 5.7e-05 23.1 0.2 0.73 9.7 0.0 3.9 2 2 0 3 3 3 1 ATPase domain predominantly from Archaea Sigma54_activ_2 PF14532.6 gi|330507349|ref|YP_004383777.1| - 0.00011 22.3 0.0 0.25 11.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain IPT PF01745.16 gi|330507349|ref|YP_004383777.1| - 0.00015 21.2 0.2 0.56 9.6 0.0 2.9 3 0 0 3 3 3 2 Isopentenyl transferase DUF2075 PF09848.9 gi|330507349|ref|YP_004383777.1| - 0.00015 21.1 0.0 0.31 10.2 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|330507349|ref|YP_004383777.1| - 0.00022 21.1 0.0 0.42 10.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|330507349|ref|YP_004383777.1| - 0.00025 20.6 0.1 0.81 9.1 0.1 2.5 2 0 0 2 2 2 2 PhoH-like protein NB-ARC PF00931.22 gi|330507349|ref|YP_004383777.1| - 0.0003 20.1 0.0 0.82 8.8 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_19 PF13245.6 gi|330507349|ref|YP_004383777.1| - 0.00032 21.0 1.0 1.1 9.6 0.0 3.0 2 1 1 3 3 2 2 AAA domain TniB PF05621.11 gi|330507349|ref|YP_004383777.1| - 0.00044 19.7 0.1 1.1 8.7 0.0 3.8 3 2 1 5 5 4 1 Bacterial TniB protein AAA_30 PF13604.6 gi|330507349|ref|YP_004383777.1| - 0.00059 19.6 0.7 1.4 8.6 0.0 2.7 2 1 0 2 2 2 2 AAA domain Bac_DnaA PF00308.18 gi|330507349|ref|YP_004383777.1| - 0.00059 19.7 0.0 1.8 8.4 0.0 2.8 2 2 0 2 2 2 2 Bacterial dnaA protein NACHT PF05729.12 gi|330507349|ref|YP_004383777.1| - 0.00089 19.2 0.3 0.69 9.8 0.0 3.2 4 0 0 4 4 3 1 NACHT domain Cytidylate_kin2 PF13189.6 gi|330507349|ref|YP_004383777.1| - 0.0014 18.8 0.0 0.45 10.6 0.0 2.6 2 0 0 2 2 2 1 Cytidylate kinase-like family ATP-synt_ab PF00006.25 gi|330507349|ref|YP_004383777.1| - 0.0016 18.1 0.0 0.46 10.1 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Rad17 PF03215.15 gi|330507349|ref|YP_004383777.1| - 0.0016 18.4 0.0 2.5 8.0 0.0 2.8 2 1 1 3 3 3 1 Rad17 P-loop domain Cytidylate_kin PF02224.18 gi|330507349|ref|YP_004383777.1| - 0.0019 18.0 0.4 2.7 7.7 0.0 2.7 3 0 0 3 3 2 1 Cytidylate kinase NTPase_1 PF03266.15 gi|330507349|ref|YP_004383777.1| - 0.0023 17.9 1.0 3.4 7.5 0.0 3.8 2 1 1 3 3 3 0 NTPase Vps4_C PF09336.10 gi|330507349|ref|YP_004383777.1| - 0.0024 17.8 0.0 0.5 10.4 0.0 2.7 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain SKI PF01202.22 gi|330507349|ref|YP_004383777.1| - 0.0045 17.1 0.0 5.3 7.1 0.0 2.8 2 0 0 2 2 2 0 Shikimate kinase Guanylate_kin PF00625.21 gi|330507349|ref|YP_004383777.1| - 0.0051 16.5 0.4 11 5.7 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase ResIII PF04851.15 gi|330507349|ref|YP_004383777.1| - 0.0087 16.1 0.0 3.2 7.7 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|330507349|ref|YP_004383777.1| - 0.024 13.5 0.0 3.5 6.4 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase Hydin_ADK PF17213.3 gi|330507349|ref|YP_004383777.1| - 0.028 14.7 0.3 8.3 6.6 0.0 2.7 3 0 0 3 3 2 0 Hydin Adenylate kinase-like domain AAA_29 PF13555.6 gi|330507349|ref|YP_004383777.1| - 0.038 13.7 0.0 9.1 6.1 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|330507349|ref|YP_004383777.1| - 0.045 12.8 0.0 1.8 7.5 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein MCM PF00493.23 gi|330507349|ref|YP_004383777.1| - 0.065 12.3 0.0 6.8 5.7 0.0 3.0 3 0 0 3 3 3 0 MCM P-loop domain CPT PF07931.12 gi|330507349|ref|YP_004383777.1| - 0.098 12.5 0.0 7.7 6.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Viral_helicase1 PF01443.18 gi|330507349|ref|YP_004383777.1| - 0.18 11.5 0.0 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase PRC PF05239.16 gi|330507350|ref|YP_004383778.1| - 4.4e-12 45.9 3.2 4.8e-12 45.8 3.2 1.0 1 0 0 1 1 1 1 PRC-barrel domain Pro_isomerase PF00160.21 gi|330507351|ref|YP_004383779.1| - 9.1e-53 178.8 0.1 1.1e-52 178.5 0.1 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Pro_isomerase PF00160.21 gi|330507352|ref|YP_004383780.1| - 1e-53 181.8 0.1 1.1e-53 181.7 0.1 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD OrfB_Zn_ribbon PF07282.11 gi|330507354|ref|YP_004383782.1| - 4.9e-22 77.6 0.0 1.3e-21 76.3 0.0 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330507354|ref|YP_004383782.1| - 1.4e-20 73.7 0.0 2.7e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|330507354|ref|YP_004383782.1| - 1.4e-18 66.1 3.6 2.6e-18 65.2 3.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|330507354|ref|YP_004383782.1| - 0.0023 17.9 0.2 0.004 17.1 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|330507354|ref|YP_004383782.1| - 0.033 13.6 2.0 0.17 11.4 2.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|330507354|ref|YP_004383782.1| - 0.25 10.9 0.8 1.7 8.2 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding RecR PF02132.15 gi|330507354|ref|YP_004383782.1| - 0.56 9.8 4.0 22 4.7 0.3 3.1 2 1 1 3 3 3 0 RecR protein DUF523 PF04463.12 gi|330507357|ref|YP_004383785.1| - 2.9e-07 30.6 0.0 5.4e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1297 PF06973.12 gi|330507359|ref|YP_004383787.1| - 4.7e-77 257.8 0.0 6.1e-77 257.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|330507359|ref|YP_004383787.1| - 6e-43 145.7 0.0 9.5e-43 145.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) Kelch_6 PF13964.6 gi|330507359|ref|YP_004383787.1| - 0.14 12.4 0.1 16 6.0 0.0 2.5 2 0 0 2 2 2 0 Kelch motif Aconitase_C PF00694.19 gi|330507360|ref|YP_004383788.1| - 6.3e-20 71.8 0.2 2.2e-19 70.1 0.3 1.7 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|330507360|ref|YP_004383788.1| - 0.00068 19.3 0.1 0.0044 16.7 0.1 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.20 gi|330507361|ref|YP_004383789.1| - 9.1e-99 330.9 0.0 1.1e-98 330.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase RNA_pol_Rpb5_C PF01191.19 gi|330507362|ref|YP_004383790.1| - 3e-27 94.3 0.0 3.3e-27 94.1 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|330507363|ref|YP_004383791.1| - 3.8e-54 183.3 0.2 4.6e-54 183.0 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|330507363|ref|YP_004383791.1| - 4.2e-26 90.9 0.0 8.4e-26 89.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|330507363|ref|YP_004383791.1| - 1.3e-25 90.2 0.5 1.9e-25 89.6 0.5 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_6 PF00562.28 gi|330507364|ref|YP_004383792.1| - 7.5e-124 413.7 0.0 9.4e-124 413.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|330507364|ref|YP_004383792.1| - 3.7e-29 101.0 0.3 1.6e-28 98.9 0.0 2.1 3 0 0 3 3 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|330507364|ref|YP_004383792.1| - 2.9e-19 69.1 0.0 5.4e-19 68.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|330507364|ref|YP_004383792.1| - 9.9e-10 38.8 5.2 2.9e-09 37.3 5.2 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Nudix_N_2 PF14803.6 gi|330507364|ref|YP_004383792.1| - 0.032 14.1 0.3 8.1 6.5 0.0 2.6 2 0 0 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|330507364|ref|YP_004383792.1| - 0.035 13.8 0.2 0.62 9.8 0.0 2.7 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.12 gi|330507364|ref|YP_004383792.1| - 0.085 13.0 1.3 0.16 12.2 1.3 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|330507364|ref|YP_004383792.1| - 0.11 12.5 0.2 0.22 11.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-FPG_IleRS PF06827.14 gi|330507364|ref|YP_004383792.1| - 0.18 11.7 1.9 0.45 10.4 1.9 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.6 gi|330507364|ref|YP_004383792.1| - 0.31 10.8 2.2 3.9 7.3 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|330507364|ref|YP_004383792.1| - 0.37 10.3 1.1 16 5.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb1_1 PF04997.12 gi|330507365|ref|YP_004383793.1| - 1.5e-104 349.7 0.0 2.2e-104 349.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|330507365|ref|YP_004383793.1| - 2e-68 229.8 0.2 3.3e-68 229.1 0.2 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|330507365|ref|YP_004383793.1| - 1.2e-32 113.0 0.0 2.3e-32 112.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|330507365|ref|YP_004383793.1| - 1e-31 109.1 0.0 2.4e-31 107.9 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|330507365|ref|YP_004383793.1| - 1.1e-27 97.1 0.1 1.9e-27 96.4 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF1287 PF06940.11 gi|330507365|ref|YP_004383793.1| - 0.15 11.7 0.1 0.28 10.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1287) RNA_pol_Rpb1_5 PF04998.17 gi|330507366|ref|YP_004383794.1| - 1.2e-55 188.8 1.1 1.6e-55 188.5 1.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 NAC PF01849.18 gi|330507366|ref|YP_004383794.1| - 0.0036 17.2 0.2 0.011 15.7 0.2 1.8 1 0 0 1 1 1 1 NAC domain Ribosomal_L9_C PF03948.14 gi|330507366|ref|YP_004383794.1| - 0.033 14.6 3.4 2.1 8.9 0.1 4.0 4 0 0 4 4 4 0 Ribosomal protein L9, C-terminal domain DUF496 PF04363.12 gi|330507366|ref|YP_004383794.1| - 0.11 12.6 0.0 0.33 11.0 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF496) MutS_III PF05192.18 gi|330507366|ref|YP_004383794.1| - 0.18 12.0 0.4 0.32 11.2 0.3 1.7 1 1 0 1 1 1 0 MutS domain III FH2 PF02181.23 gi|330507366|ref|YP_004383794.1| - 0.21 10.6 0.9 0.41 9.7 0.9 1.3 1 0 0 1 1 1 0 Formin Homology 2 Domain Ribosomal_L7Ae PF01248.26 gi|330507367|ref|YP_004383795.1| - 2.6e-11 43.1 0.0 3.5e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|330507368|ref|YP_004383796.1| - 4.6e-21 74.4 5.6 2.5e-15 56.0 1.5 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|330507368|ref|YP_004383796.1| - 4.6e-16 58.7 4.3 7.2e-16 58.0 1.8 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|330507368|ref|YP_004383796.1| - 1.5e-09 37.6 1.0 9.4e-05 22.2 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|330507368|ref|YP_004383796.1| - 3.9e-05 23.4 1.6 0.00064 19.5 0.3 2.3 2 0 0 2 2 2 1 KH domain Ribosom_S12_S23 PF00164.25 gi|330507369|ref|YP_004383797.1| - 1.3e-47 160.1 0.3 1.6e-47 159.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|330507370|ref|YP_004383798.1| - 3.2e-39 134.0 7.6 3.9e-39 133.7 7.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Methyltransf_11 PF08241.12 gi|330507371|ref|YP_004383799.1| - 1.8e-18 67.0 0.0 3e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330507371|ref|YP_004383799.1| - 1.5e-15 57.6 0.0 2.4e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330507371|ref|YP_004383799.1| - 6.9e-09 35.8 0.0 9e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330507371|ref|YP_004383799.1| - 1.7e-08 35.1 0.0 2.4e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330507371|ref|YP_004383799.1| - 3.6e-06 26.8 0.0 4.4e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330507371|ref|YP_004383799.1| - 2.6e-05 23.7 0.0 4e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|330507371|ref|YP_004383799.1| - 0.0094 15.8 0.0 0.017 15.0 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.12 gi|330507371|ref|YP_004383799.1| - 0.046 13.3 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW cIII PF08134.11 gi|330507371|ref|YP_004383799.1| - 0.12 12.1 0.0 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 cIII protein family FtsX PF02687.21 gi|330507372|ref|YP_004383800.1| - 2e-12 47.4 1.8 2e-12 47.4 1.8 3.1 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|330507372|ref|YP_004383800.1| - 9.7e-12 45.6 0.3 1.6e-11 44.9 0.3 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain DUF4131 PF13567.6 gi|330507372|ref|YP_004383800.1| - 6 6.5 8.1 1.6 8.4 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) FtsX PF02687.21 gi|330507373|ref|YP_004383801.1| - 2.2e-17 63.3 4.1 2.2e-17 63.3 4.1 3.0 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|330507373|ref|YP_004383801.1| - 7.7e-14 52.5 0.7 1.3e-13 51.7 0.7 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain MazE_antitoxin PF04014.18 gi|330507373|ref|YP_004383801.1| - 0.05 13.6 0.1 0.18 11.8 0.0 2.0 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin ABC2_membrane_3 PF12698.7 gi|330507373|ref|YP_004383801.1| - 0.066 12.3 12.2 0.16 11.0 12.2 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|330507374|ref|YP_004383802.1| - 2.1e-32 112.5 0.0 3e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|330507374|ref|YP_004383802.1| - 6.6e-10 38.8 1.2 1.2e-08 34.6 1.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|330507374|ref|YP_004383802.1| - 3.6e-06 27.4 0.0 7.5e-06 26.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|330507374|ref|YP_004383802.1| - 4.2e-06 26.8 0.0 0.0063 16.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|330507374|ref|YP_004383802.1| - 7.4e-06 25.6 0.1 1.5e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|330507374|ref|YP_004383802.1| - 0.00066 20.0 0.4 0.0047 17.2 0.4 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|330507374|ref|YP_004383802.1| - 0.001 19.0 1.1 0.0016 18.3 0.2 1.7 2 1 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|330507374|ref|YP_004383802.1| - 0.0017 18.9 0.2 0.0044 17.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|330507374|ref|YP_004383802.1| - 0.0028 17.4 0.0 0.0078 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|330507374|ref|YP_004383802.1| - 0.01 15.4 0.2 0.088 12.4 0.1 2.1 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|330507374|ref|YP_004383802.1| - 0.013 15.6 0.5 0.03 14.4 0.1 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|330507374|ref|YP_004383802.1| - 0.027 14.6 0.1 0.22 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|330507374|ref|YP_004383802.1| - 0.028 14.0 0.6 0.4 10.2 0.1 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|330507374|ref|YP_004383802.1| - 0.035 13.8 0.2 0.66 9.7 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|330507374|ref|YP_004383802.1| - 0.035 14.0 0.1 0.22 11.4 0.0 2.1 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.15 gi|330507374|ref|YP_004383802.1| - 0.066 13.1 0.2 5.3 6.9 0.0 2.3 2 0 0 2 2 2 0 NTPase MutS_V PF00488.21 gi|330507374|ref|YP_004383802.1| - 0.069 13.2 0.1 3.9 7.5 0.0 2.2 2 0 0 2 2 2 0 MutS domain V ATPase PF06745.13 gi|330507374|ref|YP_004383802.1| - 0.08 12.3 0.6 8.8 5.6 0.1 2.2 2 0 0 2 2 2 0 KaiC AAA_30 PF13604.6 gi|330507374|ref|YP_004383802.1| - 0.087 12.5 0.0 0.19 11.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|330507374|ref|YP_004383802.1| - 0.1 12.1 0.1 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|330507374|ref|YP_004383802.1| - 0.1 11.7 0.1 0.21 10.7 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain Cytidylate_kin PF02224.18 gi|330507374|ref|YP_004383802.1| - 0.17 11.6 0.6 0.74 9.5 0.1 2.2 3 0 0 3 3 3 0 Cytidylate kinase AAA_24 PF13479.6 gi|330507374|ref|YP_004383802.1| - 0.2 11.3 0.3 0.42 10.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|330507374|ref|YP_004383802.1| - 0.21 12.0 0.8 19 5.7 0.1 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Ly49 PF08391.10 gi|330507375|ref|YP_004383803.1| - 3.1 8.2 4.5 5.7 7.3 4.1 1.6 1 1 1 2 2 2 0 Ly49-like protein, N-terminal region MCH PF02289.16 gi|330507376|ref|YP_004383804.1| - 3.2e-122 407.7 0.0 3.6e-122 407.5 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Peptidase_C28 PF05408.11 gi|330507376|ref|YP_004383804.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Foot-and-mouth virus L-proteinase GTP_EFTU_D2 PF03144.25 gi|330507377|ref|YP_004383805.1| - 1.6e-11 44.5 1.5 3.8e-11 43.2 1.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|330507377|ref|YP_004383805.1| - 0.00012 21.9 0.1 0.00023 21.0 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 DUF364 PF04016.12 gi|330507378|ref|YP_004383806.1| - 1e-12 47.9 0.0 1.5e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation SBP_bac_11 PF13531.6 gi|330507379|ref|YP_004383807.1| - 4.7e-40 137.7 0.0 5.6e-40 137.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|330507379|ref|YP_004383807.1| - 2.4e-05 23.9 0.0 0.00017 21.1 0.0 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|330507379|ref|YP_004383807.1| - 5.5e-05 23.3 0.0 0.00099 19.1 0.0 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|330507379|ref|YP_004383807.1| - 0.00044 20.1 0.0 0.00095 19.1 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|330507379|ref|YP_004383807.1| - 0.11 11.9 0.0 0.22 10.8 0.0 1.6 1 0 0 1 1 1 0 LysR substrate binding domain PBP_like PF12727.7 gi|330507379|ref|YP_004383807.1| - 0.13 11.4 0.0 1.1 8.4 0.0 2.1 1 1 0 1 1 1 0 PBP superfamily domain Glycos_transf_3 PF00591.21 gi|330507380|ref|YP_004383808.1| - 3e-98 328.5 2.5 4.1e-98 328.0 2.5 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|330507380|ref|YP_004383808.1| - 5.4e-16 58.2 0.7 1.4e-15 56.8 0.7 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.22 gi|330507381|ref|YP_004383809.1| - 2.7e-36 125.2 0.0 3.1e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.17 gi|330507381|ref|YP_004383809.1| - 0.00033 20.0 0.3 0.00072 18.9 0.3 1.5 1 1 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|330507381|ref|YP_004383809.1| - 0.043 13.2 2.2 0.21 11.0 0.1 2.1 1 1 1 2 2 2 0 Nitronate monooxygenase FMN_dh PF01070.18 gi|330507381|ref|YP_004383809.1| - 0.075 12.0 1.2 3.7 6.5 0.8 2.3 2 1 0 2 2 2 0 FMN-dependent dehydrogenase Chorismate_bind PF00425.18 gi|330507382|ref|YP_004383810.1| - 2.3e-95 319.1 0.0 1.3e-93 313.3 0.0 2.6 2 1 1 3 3 3 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|330507382|ref|YP_004383810.1| - 2.8e-30 105.4 0.2 6.8e-28 97.7 0.0 3.1 2 1 0 2 2 2 2 Anthranilate synthase component I, N terminal region DUF5495 PF17599.2 gi|330507382|ref|YP_004383810.1| - 0.16 12.2 0.0 0.75 10.1 0.0 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5495) GATase PF00117.28 gi|330507383|ref|YP_004383811.1| - 8.9e-42 143.0 0.0 9.9e-42 142.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|330507383|ref|YP_004383811.1| - 2.8e-14 53.4 0.5 8.2e-13 48.6 0.5 2.1 1 1 0 1 1 1 1 Peptidase C26 IGPS PF00218.21 gi|330507384|ref|YP_004383812.1| - 1.4e-60 204.6 0.0 1.6e-60 204.4 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|330507384|ref|YP_004383812.1| - 0.0013 17.9 0.1 0.0038 16.4 0.1 1.8 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.19 gi|330507384|ref|YP_004383812.1| - 0.0033 17.2 0.0 0.0054 16.5 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.18 gi|330507384|ref|YP_004383812.1| - 0.0047 16.0 0.1 0.015 14.4 0.0 1.6 1 1 1 2 2 2 1 FMN-dependent dehydrogenase DHO_dh PF01180.21 gi|330507384|ref|YP_004383812.1| - 0.012 14.9 0.0 0.025 13.8 0.0 1.4 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|330507384|ref|YP_004383812.1| - 0.036 13.1 0.0 0.071 12.1 0.0 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PcrB PF01884.17 gi|330507384|ref|YP_004383812.1| - 0.045 13.2 0.0 0.086 12.3 0.0 1.4 1 0 0 1 1 1 0 PcrB family His_biosynth PF00977.21 gi|330507384|ref|YP_004383812.1| - 0.048 13.1 0.0 0.11 11.9 0.0 1.7 1 0 0 1 1 1 0 Histidine biosynthesis protein Trp_syntA PF00290.20 gi|330507384|ref|YP_004383812.1| - 0.14 11.0 0.0 0.38 9.5 0.0 1.8 2 0 0 2 2 2 0 Tryptophan synthase alpha chain NTP_transf_2 PF01909.23 gi|330507385|ref|YP_004383813.1| - 2.1e-11 43.9 0.5 2.4e-11 43.8 0.5 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|330507385|ref|YP_004383813.1| - 3.2e-11 43.1 0.4 4.4e-11 42.7 0.4 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase SMODS PF18144.1 gi|330507385|ref|YP_004383813.1| - 0.019 15.2 0.0 0.032 14.4 0.0 1.4 1 1 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain RlaP PF10127.9 gi|330507385|ref|YP_004383813.1| - 0.14 11.7 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family DUF1508 PF07411.12 gi|330507386|ref|YP_004383814.1| - 0.049 13.5 0.0 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1508) DUF1425 PF07233.12 gi|330507386|ref|YP_004383814.1| - 0.11 12.4 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1425) Arena_ncap_C PF17290.2 gi|330507387|ref|YP_004383815.1| - 0.11 11.9 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Arenavirus nucleocapsid C-terminal domain HicB_lk_antitox PF15919.5 gi|330507388|ref|YP_004383816.1| - 2.1e-05 24.6 0.1 2.3e-05 24.5 0.1 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF2680 PF10925.8 gi|330507388|ref|YP_004383816.1| - 0.071 13.1 0.0 0.071 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) HicA_toxin PF07927.12 gi|330507389|ref|YP_004383817.1| - 4.7e-06 26.5 0.0 4.7e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, TIR_2 PF13676.6 gi|330507390|ref|YP_004383818.1| - 1.1e-08 35.7 0.0 2.6e-08 34.5 0.0 1.6 2 0 0 2 2 2 1 TIR domain TIR-like PF10137.9 gi|330507390|ref|YP_004383818.1| - 0.012 15.6 0.0 0.058 13.4 0.0 2.2 1 1 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain Transposase_mut PF00872.18 gi|330507391|ref|YP_004383819.1| - 2e-19 69.7 0.1 2.2e-19 69.6 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family HTH_12 PF08461.10 gi|330507391|ref|YP_004383819.1| - 0.03 14.3 0.5 0.19 11.7 0.3 2.3 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HD PF01966.22 gi|330507392|ref|YP_004383820.1| - 4.1e-17 62.5 0.1 1.4e-16 60.8 0.1 1.9 1 0 0 1 1 1 1 HD domain HD_assoc PF13286.6 gi|330507392|ref|YP_004383820.1| - 1.2e-12 48.2 0.7 7.3e-06 26.4 0.1 3.4 3 0 0 3 3 3 2 Phosphohydrolase-associated domain DUF460 PF04312.13 gi|330507393|ref|YP_004383821.1| - 1.9e-45 154.0 0.1 1.4e-44 151.2 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|330507393|ref|YP_004383821.1| - 0.0011 19.2 0.4 0.0011 19.2 0.4 3.3 4 0 0 4 4 4 1 Actinobacteria/chloroflexi VLRF1 release factor Fib_alpha PF08702.10 gi|330507393|ref|YP_004383821.1| - 0.0053 17.0 3.3 0.013 15.7 3.3 1.6 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family APG6_N PF17675.1 gi|330507393|ref|YP_004383821.1| - 0.0061 17.1 1.7 0.0061 17.1 1.7 2.7 2 1 0 2 2 2 1 Apg6 coiled-coil region DUF641 PF04859.12 gi|330507393|ref|YP_004383821.1| - 0.0074 16.6 1.1 0.0074 16.6 1.1 3.3 2 1 1 3 3 3 1 Plant protein of unknown function (DUF641) HemX PF04375.14 gi|330507393|ref|YP_004383821.1| - 0.013 14.8 0.2 0.013 14.8 0.2 1.6 2 0 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase LPP PF04728.13 gi|330507393|ref|YP_004383821.1| - 0.023 15.1 0.5 0.072 13.5 0.5 1.8 1 0 0 1 1 1 0 Lipoprotein leucine-zipper DUF3000 PF11452.8 gi|330507393|ref|YP_004383821.1| - 0.042 13.4 0.1 0.088 12.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3000) DNA_methylase PF00145.17 gi|330507393|ref|YP_004383821.1| - 0.059 12.7 0.2 0.51 9.6 0.0 2.1 2 0 0 2 2 2 0 C-5 cytosine-specific DNA methylase NPV_P10 PF05531.12 gi|330507393|ref|YP_004383821.1| - 0.078 13.5 0.4 0.18 12.3 0.4 1.6 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Exonuc_VII_L PF02601.15 gi|330507393|ref|YP_004383821.1| - 0.48 9.9 4.7 0.14 11.7 0.7 2.0 2 0 0 2 2 2 0 Exonuclease VII, large subunit FlxA PF14282.6 gi|330507393|ref|YP_004383821.1| - 2 8.5 4.8 0.51 10.4 0.1 2.2 2 0 0 2 2 2 0 FlxA-like protein DUF4407 PF14362.6 gi|330507393|ref|YP_004383821.1| - 2.2 7.6 9.4 0.12 11.7 3.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) EccE PF11203.8 gi|330507393|ref|YP_004383821.1| - 2.4 8.5 7.9 0.29 11.5 0.2 3.2 4 1 1 5 5 2 0 Putative type VII ESX secretion system translocon, EccE Fzo_mitofusin PF04799.13 gi|330507393|ref|YP_004383821.1| - 4.3 6.9 9.0 0.071 12.7 0.9 2.1 2 0 0 2 2 2 0 fzo-like conserved region RIO1 PF01163.22 gi|330507394|ref|YP_004383822.1| - 7.9e-41 139.7 0.0 1.1e-40 139.2 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|330507394|ref|YP_004383822.1| - 3.7e-25 87.9 0.0 5.8e-24 84.1 0.1 2.6 3 0 0 3 3 3 1 Rio2, N-terminal APH PF01636.23 gi|330507394|ref|YP_004383822.1| - 6.3e-06 26.3 3.3 0.0019 18.2 0.6 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|330507394|ref|YP_004383822.1| - 0.029 13.8 0.0 0.046 13.1 0.0 1.5 1 1 0 1 1 1 0 Protein kinase domain Iso_dh PF00180.20 gi|330507395|ref|YP_004383823.1| - 2.1e-70 237.6 0.0 3.1e-70 237.1 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase NTP_transferase PF00483.23 gi|330507396|ref|YP_004383824.1| - 1.3e-33 116.7 0.0 1.8e-33 116.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|330507396|ref|YP_004383824.1| - 1e-10 40.9 11.6 0.00013 21.5 1.6 4.8 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 gi|330507396|ref|YP_004383824.1| - 8.9e-05 20.8 0.4 0.00013 20.3 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) NTP_transf_3 PF12804.7 gi|330507396|ref|YP_004383824.1| - 0.0053 17.1 0.0 0.01 16.2 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|330507396|ref|YP_004383824.1| - 0.26 11.1 8.3 0.084 12.6 0.6 3.2 2 1 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase UDG PF03167.19 gi|330507398|ref|YP_004383826.1| - 2.4e-46 157.6 0.0 2.9e-46 157.3 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Aconitase PF00330.20 gi|330507399|ref|YP_004383827.1| - 1.6e-93 314.3 1.5 8.8e-92 308.5 1.5 2.1 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) PseudoU_synth_1 PF01416.20 gi|330507400|ref|YP_004383828.1| - 5.9e-26 91.1 0.0 2.2e-21 76.3 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase Flavodoxin_1 PF00258.25 gi|330507401|ref|YP_004383829.1| - 1e-10 42.0 0.0 1.5e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|330507401|ref|YP_004383829.1| - 3.4e-09 37.1 0.0 3.7e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.15 gi|330507401|ref|YP_004383829.1| - 0.0035 17.1 0.4 0.034 13.9 0.1 2.0 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|330507401|ref|YP_004383829.1| - 0.056 13.1 0.0 0.071 12.8 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin domain Methyltransf_25 PF13649.6 gi|330507402|ref|YP_004383830.1| - 1.7e-20 73.5 0.0 2.8e-20 72.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330507402|ref|YP_004383830.1| - 9e-18 64.5 0.0 1.1e-17 64.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507402|ref|YP_004383830.1| - 9.7e-18 64.6 0.0 1.5e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330507402|ref|YP_004383830.1| - 1.2e-12 48.0 0.0 1.4e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330507402|ref|YP_004383830.1| - 7e-12 46.0 0.0 1e-11 45.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330507402|ref|YP_004383830.1| - 9.8e-11 41.4 0.0 1.1e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|330507402|ref|YP_004383830.1| - 9.1e-10 38.3 0.0 1.1e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|330507402|ref|YP_004383830.1| - 3.5e-07 30.2 0.0 5.3e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|330507402|ref|YP_004383830.1| - 4.7e-05 22.9 0.0 6.7e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|330507402|ref|YP_004383830.1| - 0.00013 21.6 0.0 0.00019 21.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_18 PF12847.7 gi|330507402|ref|YP_004383830.1| - 0.0011 18.9 0.0 0.0022 17.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|330507402|ref|YP_004383830.1| - 0.0027 16.8 0.0 0.004 16.2 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase RrnaAD PF00398.20 gi|330507402|ref|YP_004383830.1| - 0.0039 16.3 0.0 0.0065 15.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|330507402|ref|YP_004383830.1| - 0.0041 16.7 0.0 0.006 16.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|330507402|ref|YP_004383830.1| - 0.0051 16.3 0.0 0.0096 15.4 0.0 1.6 1 1 0 1 1 1 1 Putative methyltransferase Met_10 PF02475.16 gi|330507402|ref|YP_004383830.1| - 0.008 15.9 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein DREV PF05219.12 gi|330507402|ref|YP_004383830.1| - 0.031 13.4 0.0 0.046 12.8 0.0 1.6 1 1 0 1 1 1 0 DREV methyltransferase DUF938 PF06080.12 gi|330507402|ref|YP_004383830.1| - 0.036 13.8 0.0 0.1 12.3 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF938) GCD14 PF08704.10 gi|330507402|ref|YP_004383830.1| - 0.099 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit CheR PF01739.18 gi|330507402|ref|YP_004383830.1| - 0.12 11.8 0.0 2.9 7.3 0.0 2.6 1 1 0 1 1 1 0 CheR methyltransferase, SAM binding domain Pal1 PF08316.11 gi|330507402|ref|YP_004383830.1| - 1.2 9.9 2.6 0.92 10.3 0.6 1.7 2 0 0 2 2 2 0 Pal1 cell morphology protein DUF4266 PF14086.6 gi|330507403|ref|YP_004383831.1| - 2.4 9.2 11.1 4.6 8.3 11.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4266) CdhD PF03599.16 gi|330507404|ref|YP_004383832.1| - 3.9e-128 427.4 0.1 4.7e-128 427.2 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|330507404|ref|YP_004383832.1| - 3.5e-13 49.0 2.5 7.9e-13 47.8 2.5 1.7 1 0 0 1 1 1 1 Putative Fe-S cluster YhfH PF14149.6 gi|330507404|ref|YP_004383832.1| - 0.078 13.0 1.2 0.16 12.0 1.2 1.5 1 0 0 1 1 1 0 YhfH-like protein CdhD PF03599.16 gi|330507405|ref|YP_004383833.1| - 8.6e-77 258.4 0.4 5.9e-73 245.8 0.0 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit Pterin_bind PF00809.22 gi|330507405|ref|YP_004383833.1| - 0.0098 15.6 0.3 0.32 10.6 0.3 2.3 1 1 0 1 1 1 1 Pterin binding enzyme HSP70 PF00012.20 gi|330507405|ref|YP_004383833.1| - 0.057 11.6 0.0 0.092 10.9 0.0 1.2 1 0 0 1 1 1 0 Hsp70 protein CbiA PF01656.23 gi|330507406|ref|YP_004383834.1| - 5.2e-17 62.1 0.1 6.3e-17 61.8 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|330507406|ref|YP_004383834.1| - 2.3e-14 53.7 0.0 4.3e-14 52.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|330507406|ref|YP_004383834.1| - 9.3e-09 34.9 0.5 2.4e-08 33.6 0.5 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|330507406|ref|YP_004383834.1| - 2.4e-07 30.5 0.0 4.2e-06 26.4 0.0 2.1 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|330507406|ref|YP_004383834.1| - 4.8e-07 29.5 0.1 2.2e-05 24.1 0.1 2.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|330507406|ref|YP_004383834.1| - 1.5e-06 27.9 0.3 3.3e-05 23.5 0.3 2.1 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 gi|330507406|ref|YP_004383834.1| - 5.9e-05 22.9 0.0 8.6e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|330507406|ref|YP_004383834.1| - 0.0002 21.0 0.2 0.022 14.4 0.1 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|330507406|ref|YP_004383834.1| - 0.00058 19.6 0.0 0.00087 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|330507406|ref|YP_004383834.1| - 0.0016 18.6 0.3 0.0051 16.9 0.2 1.7 1 1 1 2 2 2 1 Helicase HerA, central domain MeaB PF03308.16 gi|330507406|ref|YP_004383834.1| - 0.002 17.2 0.0 0.0034 16.4 0.0 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|330507406|ref|YP_004383834.1| - 0.0024 18.3 0.0 0.0038 17.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|330507406|ref|YP_004383834.1| - 0.0042 17.0 0.3 0.81 9.6 0.0 2.4 2 1 0 2 2 2 1 NTPase AAA_22 PF13401.6 gi|330507406|ref|YP_004383834.1| - 0.0047 17.2 0.0 0.013 15.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.6 gi|330507406|ref|YP_004383834.1| - 0.0047 16.8 0.1 4.8 7.0 0.1 2.8 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|330507406|ref|YP_004383834.1| - 0.0059 17.0 0.7 0.009 16.4 0.7 1.6 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|330507406|ref|YP_004383834.1| - 0.006 15.9 2.2 0.88 8.8 0.1 3.0 2 1 1 3 3 3 1 ATPase MipZ ABC_tran PF00005.27 gi|330507406|ref|YP_004383834.1| - 0.0061 17.1 0.0 0.0095 16.5 0.0 1.6 1 1 0 1 1 1 1 ABC transporter AAA_7 PF12775.7 gi|330507406|ref|YP_004383834.1| - 0.007 15.9 0.0 0.024 14.2 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_18 PF13238.6 gi|330507406|ref|YP_004383834.1| - 0.0071 16.9 0.0 0.12 13.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|330507406|ref|YP_004383834.1| - 0.012 15.6 0.2 0.015 15.3 0.2 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|330507406|ref|YP_004383834.1| - 0.012 14.9 0.0 0.03 13.6 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|330507406|ref|YP_004383834.1| - 0.025 14.6 0.0 0.12 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|330507406|ref|YP_004383834.1| - 0.033 14.1 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase KAP_NTPase PF07693.14 gi|330507406|ref|YP_004383834.1| - 0.036 13.3 0.0 0.053 12.8 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain NB-ARC PF00931.22 gi|330507406|ref|YP_004383834.1| - 0.037 13.2 0.2 0.061 12.5 0.1 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|330507406|ref|YP_004383834.1| - 0.041 13.5 0.0 0.3 10.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain RecA PF00154.21 gi|330507406|ref|YP_004383834.1| - 0.041 13.4 0.4 0.18 11.2 0.1 2.1 2 1 0 2 2 2 0 recA bacterial DNA recombination protein Pox_A32 PF04665.12 gi|330507406|ref|YP_004383834.1| - 0.045 13.2 0.0 4.4 6.7 0.0 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein LpxK PF02606.14 gi|330507406|ref|YP_004383834.1| - 0.053 12.6 0.1 0.12 11.5 0.1 1.5 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase PRK PF00485.18 gi|330507406|ref|YP_004383834.1| - 0.068 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 gi|330507406|ref|YP_004383834.1| - 0.08 13.3 0.0 0.76 10.2 0.0 2.3 2 0 0 2 2 2 0 RNA helicase DUF463 PF04317.12 gi|330507406|ref|YP_004383834.1| - 0.1 11.5 0.1 0.19 10.6 0.0 1.4 2 0 0 2 2 2 0 YcjX-like family, DUF463 T2SSE PF00437.20 gi|330507406|ref|YP_004383834.1| - 0.13 11.3 0.1 0.29 10.1 0.1 1.5 1 1 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.19 gi|330507406|ref|YP_004383834.1| - 0.2 11.2 1.0 3 7.4 1.0 2.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CdhC PF03598.15 gi|330507407|ref|YP_004383835.1| - 2.8e-56 189.7 0.0 5e-56 188.9 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CO_dh PF02552.16 gi|330507408|ref|YP_004383836.1| - 1.1e-36 126.2 0.0 1.3e-36 125.9 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|330507408|ref|YP_004383836.1| - 0.00033 20.4 0.0 0.0011 18.8 0.0 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.20 gi|330507409|ref|YP_004383837.1| - 2.4e-90 303.7 9.8 2.5e-77 260.7 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_8 PF13183.6 gi|330507409|ref|YP_004383837.1| - 4.1e-08 33.6 3.2 0.0014 19.1 0.6 3.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330507409|ref|YP_004383837.1| - 9.8e-07 29.6 2.8 0.022 15.7 0.3 3.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|330507409|ref|YP_004383837.1| - 8.6e-05 23.0 6.4 0.0022 18.5 0.4 3.4 4 0 0 4 4 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330507409|ref|YP_004383837.1| - 0.00017 21.6 12.2 0.00017 21.6 12.2 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330507409|ref|YP_004383837.1| - 0.00043 20.5 8.0 0.0037 17.4 0.6 2.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330507409|ref|YP_004383837.1| - 0.00078 20.0 11.8 0.00078 20.0 11.8 3.6 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330507409|ref|YP_004383837.1| - 0.0019 18.3 21.8 0.0076 16.4 2.0 3.9 3 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330507409|ref|YP_004383837.1| - 0.0096 16.0 12.2 0.0096 16.0 12.2 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330507409|ref|YP_004383837.1| - 0.014 16.2 12.5 0.037 14.9 2.4 2.9 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|330507409|ref|YP_004383837.1| - 0.23 11.2 10.1 13 5.6 10.4 2.6 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.27 gi|330507409|ref|YP_004383837.1| - 0.29 11.0 27.0 0.025 14.4 3.4 3.9 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330507409|ref|YP_004383837.1| - 0.84 9.9 26.2 0.48 10.6 3.4 4.0 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330507409|ref|YP_004383837.1| - 2 9.1 20.8 0.56 10.8 5.8 3.7 3 0 0 3 3 2 0 4Fe-4S binding domain c-SKI_SMAD_bind PF08782.10 gi|330507409|ref|YP_004383837.1| - 8.4 6.7 8.7 3.1 8.1 1.3 2.8 1 1 1 2 2 2 0 c-SKI Smad4 binding domain CobD_Cbib PF03186.13 gi|330507410|ref|YP_004383838.1| - 1.2e-85 287.1 1.4 1.4e-85 286.8 1.4 1.0 1 0 0 1 1 1 1 CobD/Cbib protein UCH_N PF16674.5 gi|330507411|ref|YP_004383839.1| - 0.12 12.4 0.1 0.27 11.2 0.1 1.7 1 0 0 1 1 1 0 N-terminal of ubiquitin carboxyl-terminal hydrolase 37 TPR_12 PF13424.6 gi|330507412|ref|YP_004383840.1| - 2.1e-132 431.7 90.6 1.4e-16 60.5 0.8 16.4 9 4 7 18 18 18 18 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330507412|ref|YP_004383840.1| - 6.3e-79 256.9 76.9 1.3e-06 28.0 0.1 26.3 27 0 0 27 27 27 20 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330507412|ref|YP_004383840.1| - 4.7e-76 244.9 97.4 7.7e-05 22.5 0.4 27.1 28 0 0 28 28 27 20 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330507412|ref|YP_004383840.1| - 8.1e-71 229.0 94.2 7.6e-05 22.5 0.2 27.5 29 1 0 30 30 27 18 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330507412|ref|YP_004383840.1| - 1.7e-54 180.3 97.7 4.7e-06 26.3 0.9 25.7 26 1 1 27 27 27 16 Tetratricopeptide repeat SNAP PF14938.6 gi|330507412|ref|YP_004383840.1| - 1.5e-47 162.4 20.7 1.3e-08 34.6 0.4 10.1 3 1 6 11 11 11 10 Soluble NSF attachment protein, SNAP TPR_MalT PF17874.1 gi|330507412|ref|YP_004383840.1| - 1.6e-46 159.3 53.9 2.1e-14 53.6 6.8 8.5 1 1 7 8 8 8 8 MalT-like TPR region TPR_8 PF13181.6 gi|330507412|ref|YP_004383840.1| - 1.3e-41 137.3 67.6 0.014 15.5 0.0 24.6 24 1 0 25 25 25 11 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330507412|ref|YP_004383840.1| - 3.2e-34 117.3 80.3 0.00016 22.2 1.5 16.9 12 4 5 17 17 16 12 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330507412|ref|YP_004383840.1| - 6.6e-29 99.3 43.9 0.015 14.9 0.0 20.2 22 3 3 25 25 22 8 TPR repeat TPR_6 PF13174.6 gi|330507412|ref|YP_004383840.1| - 6.1e-22 76.7 56.4 0.058 14.0 0.2 21.7 21 2 1 22 22 21 2 Tetratricopeptide repeat RPN7 PF10602.9 gi|330507412|ref|YP_004383840.1| - 6.9e-20 71.5 6.7 0.0059 16.3 0.0 10.1 2 1 8 10 10 10 5 26S proteasome subunit RPN7 TPR_14 PF13428.6 gi|330507412|ref|YP_004383840.1| - 1.1e-19 69.4 83.0 0.3 12.0 0.0 23.6 18 6 8 26 26 24 5 Tetratricopeptide repeat TPR_4 PF07721.14 gi|330507412|ref|YP_004383840.1| - 1.7e-18 65.2 75.3 0.035 14.7 0.2 21.7 25 0 0 25 25 20 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330507412|ref|YP_004383840.1| - 2.6e-16 59.9 75.9 0.055 14.0 0.0 17.5 7 3 8 19 19 19 6 Tetratricopeptide repeat MIT PF04212.18 gi|330507412|ref|YP_004383840.1| - 2.7e-11 43.4 36.0 0.58 10.3 0.0 15.4 14 3 4 18 18 15 2 MIT (microtubule interacting and transport) domain TPR_15 PF13429.6 gi|330507412|ref|YP_004383840.1| - 9e-11 41.5 37.6 0.00085 18.6 0.0 11.6 7 6 6 13 13 13 5 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|330507412|ref|YP_004383840.1| - 5.6e-08 32.7 12.8 0.059 13.4 0.1 8.0 7 2 1 8 8 7 2 Anaphase-promoting complex subunit 5 PPR PF01535.20 gi|330507412|ref|YP_004383840.1| - 2.4e-06 27.4 21.5 11 6.5 0.0 13.5 17 1 0 17 17 10 0 PPR repeat DUF2225 PF09986.9 gi|330507412|ref|YP_004383840.1| - 0.00012 21.8 7.7 5 6.8 0.1 7.5 8 2 1 10 10 10 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_17 PF13431.6 gi|330507412|ref|YP_004383840.1| - 0.00012 22.2 43.7 12 6.5 0.0 18.8 23 1 0 23 23 19 0 Tetratricopeptide repeat Foie-gras_1 PF11817.8 gi|330507412|ref|YP_004383840.1| - 0.00031 20.4 5.0 0.47 10.0 0.0 6.0 6 0 0 6 6 6 1 Foie gras liver health family 1 SRP68 PF16969.5 gi|330507412|ref|YP_004383840.1| - 0.00091 18.3 13.1 1 8.2 0.2 6.3 6 2 1 7 7 7 2 RNA-binding signal recognition particle 68 TPR_3 PF07720.12 gi|330507412|ref|YP_004383840.1| - 0.0011 19.0 20.4 6.1 7.0 0.0 10.6 13 0 0 13 13 10 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330507412|ref|YP_004383840.1| - 0.0013 18.9 38.1 0.031 14.5 0.4 11.9 8 5 5 14 14 13 2 Anaphase-promoting complex, cyclosome, subunit 3 Tricorn_C1 PF14684.6 gi|330507412|ref|YP_004383840.1| - 0.0016 18.4 0.1 0.12 12.4 0.0 4.0 3 0 0 3 3 2 1 Tricorn protease C1 domain PPR_2 PF13041.6 gi|330507412|ref|YP_004383840.1| - 0.003 17.7 0.2 65 3.8 0.0 6.5 5 0 0 5 5 5 0 PPR repeat family RPN6_N PF18055.1 gi|330507412|ref|YP_004383840.1| - 0.0045 17.3 0.3 0.62 10.4 0.2 4.7 5 0 0 5 5 3 1 26S proteasome regulatory subunit RPN6 N-terminal domain Ribosomal_S7 PF00177.21 gi|330507412|ref|YP_004383840.1| - 0.005 16.5 0.0 22 4.7 0.0 4.7 5 0 0 5 5 5 0 Ribosomal protein S7p/S5e TPR_21 PF09976.9 gi|330507412|ref|YP_004383840.1| - 0.0093 15.7 37.9 2.2 8.0 1.8 10.4 6 3 6 12 12 12 3 Tetratricopeptide repeat-like domain DUF4810 PF16068.5 gi|330507412|ref|YP_004383840.1| - 0.018 15.6 3.4 87 3.8 0.0 7.2 7 0 0 7 7 7 0 Domain of unknown function (DUF4810) DUF3856 PF12968.7 gi|330507412|ref|YP_004383840.1| - 0.06 13.4 19.4 0.39 10.8 0.1 7.7 6 2 3 9 9 7 0 Domain of Unknown Function (DUF3856) FliS PF02561.14 gi|330507412|ref|YP_004383840.1| - 0.13 12.5 2.1 3.8 7.8 0.1 4.1 4 1 1 5 5 2 0 Flagellar protein FliS PPR_1 PF12854.7 gi|330507412|ref|YP_004383840.1| - 0.32 10.7 2.9 41 4.0 0.0 5.1 7 0 0 7 7 6 0 PPR repeat SHNi-TPR PF10516.9 gi|330507412|ref|YP_004383840.1| - 0.68 9.4 14.8 3.8 7.1 0.0 7.2 10 0 0 10 10 7 0 SHNi-TPR Fer4 PF00037.27 gi|330507413|ref|YP_004383841.1| - 4.9e-14 51.5 13.5 1.2e-07 31.3 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330507413|ref|YP_004383841.1| - 3.2e-11 43.7 6.6 1.9e-05 25.2 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330507413|ref|YP_004383841.1| - 1.6e-10 40.6 13.0 3.4e-05 23.7 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330507413|ref|YP_004383841.1| - 3.9e-10 39.7 21.0 5.5e-07 29.7 12.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330507413|ref|YP_004383841.1| - 4.7e-10 39.0 14.8 2.5e-05 24.1 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330507413|ref|YP_004383841.1| - 1.8e-09 37.6 9.8 2.9e-09 36.9 9.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330507413|ref|YP_004383841.1| - 3.2e-08 33.6 6.4 0.001 19.2 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330507413|ref|YP_004383841.1| - 7.4e-08 32.3 16.8 0.00045 20.5 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330507413|ref|YP_004383841.1| - 1.5e-07 32.2 9.2 0.00083 20.2 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|330507413|ref|YP_004383841.1| - 9.6e-07 29.3 3.8 0.018 15.5 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330507413|ref|YP_004383841.1| - 4.8e-05 23.8 10.7 0.0038 17.7 1.2 2.5 3 0 0 3 3 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|330507413|ref|YP_004383841.1| - 5.8e-05 23.7 20.7 0.016 16.1 5.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330507413|ref|YP_004383841.1| - 0.00022 21.4 13.5 0.026 14.7 13.6 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330507413|ref|YP_004383841.1| - 0.00042 20.7 14.2 0.071 13.6 3.0 2.2 1 1 3 4 4 2 2 4Fe-4S dicluster domain NIL PF09383.10 gi|330507413|ref|YP_004383841.1| - 0.00055 19.7 0.1 0.00078 19.2 0.1 1.2 1 0 0 1 1 1 1 NIL domain Trp_syntA PF00290.20 gi|330507413|ref|YP_004383841.1| - 0.013 14.4 0.2 0.016 14.1 0.2 1.1 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Fer4_15 PF13459.6 gi|330507413|ref|YP_004383841.1| - 0.024 15.4 11.8 0.71 10.7 1.3 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain GMC_oxred_N PF00732.19 gi|330507413|ref|YP_004383841.1| - 0.035 13.5 0.4 2.9 7.2 0.0 2.0 1 1 1 2 2 2 0 GMC oxidoreductase FeoC PF09012.10 gi|330507413|ref|YP_004383841.1| - 0.036 14.1 0.9 0.23 11.6 0.0 2.0 1 1 1 2 2 2 0 FeoC like transcriptional regulator tify PF06200.14 gi|330507413|ref|YP_004383841.1| - 0.049 13.0 0.3 0.08 12.3 0.3 1.3 1 0 0 1 1 1 0 tify domain DUF678 PF05077.12 gi|330507413|ref|YP_004383841.1| - 0.17 12.1 3.6 0.35 11.0 3.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF678) HCV_NS2 PF01538.18 gi|330507413|ref|YP_004383841.1| - 0.39 10.4 7.6 2.5 7.7 1.2 2.2 1 1 1 2 2 2 0 Hepatitis C virus non-structural protein NS2 Fer4_22 PF17179.4 gi|330507413|ref|YP_004383841.1| - 0.6 11.0 16.1 1.4 9.8 4.4 2.2 1 1 1 3 3 3 0 4Fe-4S dicluster domain HcyBio PF01837.16 gi|330507414|ref|YP_004383842.1| - 1.7e-131 438.3 0.0 2.1e-131 437.9 0.0 1.1 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|330507414|ref|YP_004383842.1| - 4.6e-26 91.0 4.5 4.3e-14 52.7 0.3 2.5 2 0 0 2 2 2 2 CBS domain tify PF06200.14 gi|330507414|ref|YP_004383842.1| - 0.21 10.9 0.3 0.41 10.0 0.3 1.4 1 0 0 1 1 1 0 tify domain Radical_SAM PF04055.21 gi|330507415|ref|YP_004383843.1| - 2.8e-09 37.6 0.1 9.6e-09 35.8 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|330507415|ref|YP_004383843.1| - 0.095 12.7 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 B12 binding domain DUF2551 PF10826.8 gi|330507416|ref|YP_004383844.1| - 6.4e-29 100.0 0.2 7.7e-29 99.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.19 gi|330507416|ref|YP_004383844.1| - 0.052 13.7 0.0 0.069 13.3 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family SEF14_adhesin PF06443.11 gi|330507416|ref|YP_004383844.1| - 0.2 11.5 0.0 0.21 11.4 0.0 1.1 1 0 0 1 1 1 0 SEF14-like adhesin Radical_SAM PF04055.21 gi|330507417|ref|YP_004383845.1| - 8e-09 36.1 0.4 1.9e-08 34.9 0.1 1.8 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|330507417|ref|YP_004383845.1| - 5.3e-08 33.0 0.0 9e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|330507417|ref|YP_004383845.1| - 3.8e-05 24.0 0.0 6.6e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TPP_enzyme_C PF02775.21 gi|330507418|ref|YP_004383846.1| - 1.4e-22 80.2 0.6 2.2e-22 79.5 0.6 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|330507418|ref|YP_004383846.1| - 9.8e-12 45.1 0.1 1.1e-10 41.7 0.1 2.1 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|330507418|ref|YP_004383846.1| - 3.1e-07 29.9 10.4 1.2e-05 25.0 2.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330507418|ref|YP_004383846.1| - 0.00016 21.8 11.7 0.00047 20.3 11.7 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330507418|ref|YP_004383846.1| - 0.00051 20.1 12.5 0.18 12.0 13.2 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330507418|ref|YP_004383846.1| - 0.00096 19.1 16.6 0.012 15.6 2.2 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330507418|ref|YP_004383846.1| - 0.0018 18.3 3.0 0.0018 18.3 3.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330507418|ref|YP_004383846.1| - 0.0038 18.1 10.2 0.012 16.5 2.4 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|330507418|ref|YP_004383846.1| - 0.011 15.9 13.0 0.097 12.8 13.4 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330507418|ref|YP_004383846.1| - 0.03 14.9 13.7 0.091 13.4 3.3 3.0 2 1 0 3 3 3 0 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|330507418|ref|YP_004383846.1| - 0.05 13.2 0.1 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_4 PF12800.7 gi|330507418|ref|YP_004383846.1| - 0.058 13.9 13.3 0.67 10.6 2.9 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330507418|ref|YP_004383846.1| - 1.5 9.4 13.7 0.65 10.6 2.8 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330507418|ref|YP_004383846.1| - 3.1 8.6 8.9 5 7.9 1.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain POR PF01558.18 gi|330507419|ref|YP_004383847.1| - 8e-35 120.5 0.0 9.4e-35 120.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase HEAT_2 PF13646.6 gi|330507420|ref|YP_004383848.1| - 3.2e-18 65.9 4.9 1.8e-09 37.8 1.0 2.3 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.22 gi|330507420|ref|YP_004383848.1| - 2.3e-07 30.5 0.2 0.22 11.9 0.0 3.9 4 0 0 4 4 4 3 HEAT repeat HEAT_PBS PF03130.16 gi|330507420|ref|YP_004383848.1| - 4.6e-07 29.9 2.3 0.0047 17.5 0.5 3.9 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat Cnd1 PF12717.7 gi|330507420|ref|YP_004383848.1| - 2.2e-05 24.5 0.4 0.16 12.0 0.2 2.9 1 1 2 3 3 3 3 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|330507420|ref|YP_004383848.1| - 4.3e-05 23.9 1.8 0.1 13.1 0.0 3.8 3 2 1 4 4 4 2 HEAT-like repeat Adaptin_N PF01602.20 gi|330507420|ref|YP_004383848.1| - 0.013 14.0 1.5 0.11 11.0 0.9 2.0 1 1 1 2 2 2 0 Adaptin N terminal region Dodecin PF07311.12 gi|330507421|ref|YP_004383849.1| - 5.6e-22 77.8 0.1 6.4e-22 77.6 0.1 1.0 1 0 0 1 1 1 1 Dodecin Glycos_transf_2 PF00535.26 gi|330507422|ref|YP_004383850.1| - 1.6e-23 83.3 0.0 2.5e-23 82.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330507422|ref|YP_004383850.1| - 1.2e-07 31.8 0.0 1.9e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|330507422|ref|YP_004383850.1| - 4.2e-05 24.0 0.0 0.00038 20.8 0.0 1.9 1 1 1 2 2 2 1 MobA-like NTP transferase domain HOK_GEF PF01848.16 gi|330507422|ref|YP_004383850.1| - 0.032 13.6 0.0 0.094 12.1 0.0 1.8 1 0 0 1 1 1 0 Hok/gef family CrgA PF06781.12 gi|330507422|ref|YP_004383850.1| - 0.085 12.9 7.2 3.6 7.7 2.7 2.6 2 0 0 2 2 2 0 Cell division protein CrgA Glyco_tranf_2_2 PF10111.9 gi|330507422|ref|YP_004383850.1| - 0.085 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 DUF373 PF04123.13 gi|330507422|ref|YP_004383850.1| - 1.4 8.3 11.9 1.3 8.4 10.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Glycos_transf_1 PF00534.20 gi|330507423|ref|YP_004383851.1| - 3.4e-32 111.3 0.0 7.1e-32 110.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330507423|ref|YP_004383851.1| - 2.8e-25 89.3 0.0 6.4e-25 88.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330507423|ref|YP_004383851.1| - 4.6e-21 75.6 0.1 2.5e-20 73.1 0.1 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|330507423|ref|YP_004383851.1| - 1.4e-14 54.9 0.1 3.9e-14 53.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|330507423|ref|YP_004383851.1| - 0.011 16.1 0.0 0.033 14.6 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferases group 1 HATPase_c_4 PF13749.6 gi|330507424|ref|YP_004383852.1| - 1.6e-19 69.8 0.0 8.5e-19 67.5 0.0 2.2 2 0 0 2 2 2 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|330507424|ref|YP_004383852.1| - 7.5e-08 32.7 0.0 1.2e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 Putative DNA-binding domain MauJ PF17419.2 gi|330507427|ref|YP_004383855.1| - 0.0011 18.5 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Methylamine utilization protein MauJ DUF4334 PF14232.6 gi|330507427|ref|YP_004383855.1| - 0.045 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4334) E1-E2_ATPase PF00122.20 gi|330507428|ref|YP_004383856.1| - 1.7e-56 190.6 2.8 2.4e-56 190.1 0.9 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|330507428|ref|YP_004383856.1| - 2.3e-43 148.9 0.7 7.5e-43 147.3 0.3 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|330507428|ref|YP_004383856.1| - 1.1e-05 25.3 0.1 0.0016 18.2 0.4 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|330507428|ref|YP_004383856.1| - 0.00028 21.4 0.0 0.00093 19.6 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Zip PF02535.22 gi|330507428|ref|YP_004383856.1| - 0.0074 15.5 0.0 0.023 13.9 0.0 1.7 1 1 0 1 1 1 1 ZIP Zinc transporter DUF5612 PF18462.1 gi|330507428|ref|YP_004383856.1| - 0.041 13.7 0.2 0.12 12.1 0.2 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF5612) TssN PF17555.2 gi|330507428|ref|YP_004383856.1| - 9.1 5.6 11.0 2.3 7.5 7.4 1.7 2 0 0 2 2 2 0 Type VI secretion system, TssN Pentapeptide_3 PF13576.6 gi|330507429|ref|YP_004383857.1| - 6.9e-33 112.6 64.7 8.6e-10 38.6 4.7 6.2 2 1 2 6 6 6 5 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.6 gi|330507429|ref|YP_004383857.1| - 8.4e-05 22.7 20.8 0.0079 16.3 2.0 4.9 1 1 2 3 3 3 2 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.16 gi|330507429|ref|YP_004383857.1| - 0.00096 19.1 3.1 0.0046 16.9 0.4 2.8 2 1 0 2 2 2 1 Ion channel Pentapeptide PF00805.22 gi|330507429|ref|YP_004383857.1| - 0.015 15.0 20.9 0.13 11.9 0.9 6.4 6 1 1 7 7 7 0 Pentapeptide repeats (8 copies) DcrB PF08786.11 gi|330507430|ref|YP_004383858.1| - 2.7e-06 27.5 0.0 3.7e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 DcrB PsbP PF01789.16 gi|330507430|ref|YP_004383858.1| - 0.00093 19.4 0.3 0.011 15.9 0.3 2.1 1 1 0 1 1 1 1 PsbP NosD PF05048.13 gi|330507431|ref|YP_004383859.1| - 4.9e-24 84.9 4.8 5.8e-24 84.7 4.8 1.1 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|330507431|ref|YP_004383859.1| - 7.1e-07 29.2 11.8 7.1e-07 29.2 11.8 1.5 1 1 0 1 1 1 1 Right handed beta helix region Transposase_20 PF02371.16 gi|330507432|ref|YP_004383860.1| - 3.2e-25 88.3 0.1 5.9e-25 87.4 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330507432|ref|YP_004383860.1| - 3.7e-20 72.4 0.0 7.3e-20 71.4 0.0 1.5 1 0 0 1 1 1 1 Transposase Init_tRNA_PT PF04179.12 gi|330507432|ref|YP_004383860.1| - 0.038 14.3 1.0 0.088 13.1 0.1 2.0 2 0 0 2 2 2 0 Rit1 DUSP-like domain TPR_1 PF00515.28 gi|330507433|ref|YP_004383861.1| - 7.9e-53 174.2 4.7 2.7e-09 36.4 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330507433|ref|YP_004383861.1| - 2.5e-42 139.6 13.6 3.8e-07 29.7 0.1 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330507433|ref|YP_004383861.1| - 1.3e-39 133.5 6.3 2.5e-07 30.2 0.0 6.4 3 2 3 6 6 6 6 TPR repeat TPR_8 PF13181.6 gi|330507433|ref|YP_004383861.1| - 7.2e-38 125.6 0.6 2e-06 27.6 0.0 7.0 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330507433|ref|YP_004383861.1| - 1.8e-30 103.1 3.2 5.8e-07 29.5 0.0 7.5 7 1 0 7 7 7 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330507433|ref|YP_004383861.1| - 1.9e-23 82.8 19.1 9.1e-10 39.0 0.1 4.6 3 2 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330507433|ref|YP_004383861.1| - 1.8e-22 78.1 16.6 0.0019 18.8 0.1 6.9 2 1 4 7 7 7 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330507433|ref|YP_004383861.1| - 4.7e-22 78.1 15.3 3.4e-08 33.6 0.2 5.5 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330507433|ref|YP_004383861.1| - 4.9e-18 65.0 6.6 2.5e-07 30.8 0.1 3.9 3 2 1 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330507433|ref|YP_004383861.1| - 7e-16 57.0 6.2 0.05 13.6 0.0 7.1 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330507433|ref|YP_004383861.1| - 3.5e-15 56.3 7.7 1.7e-06 28.4 0.6 4.7 1 1 5 6 6 6 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330507433|ref|YP_004383861.1| - 1.6e-13 50.0 22.9 0.34 10.8 0.0 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330507433|ref|YP_004383861.1| - 5.7e-11 42.3 3.0 1.5 9.7 0.0 6.8 7 0 0 7 7 7 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330507433|ref|YP_004383861.1| - 2.8e-08 33.9 3.4 0.81 9.8 0.1 5.5 2 2 3 5 5 5 3 Domain of Unknown Function (DUF3856) TPR_4 PF07721.14 gi|330507433|ref|YP_004383861.1| - 2.2e-07 30.9 22.9 0.089 13.5 0.3 6.9 7 0 0 7 7 7 2 Tetratricopeptide repeat BTAD PF03704.17 gi|330507433|ref|YP_004383861.1| - 1.6e-06 28.6 11.7 0.0005 20.5 1.0 3.4 1 1 0 3 3 3 2 Bacterial transcriptional activator domain ANAPC3 PF12895.7 gi|330507433|ref|YP_004383861.1| - 2.6e-06 27.5 1.9 0.0013 18.9 0.1 3.6 3 1 1 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|330507433|ref|YP_004383861.1| - 3.6e-05 22.9 0.1 0.0081 15.1 0.0 2.2 2 0 0 2 2 2 2 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|330507433|ref|YP_004383861.1| - 6.2e-05 22.4 4.0 0.001 18.3 0.5 3.4 1 1 1 3 3 3 1 Tetratricopeptide repeat MIT PF04212.18 gi|330507433|ref|YP_004383861.1| - 0.0003 20.8 2.5 0.29 11.2 0.1 4.1 5 1 0 5 5 5 1 MIT (microtubule interacting and transport) domain TPR_5 PF12688.7 gi|330507433|ref|YP_004383861.1| - 0.00092 19.4 2.8 1 9.6 0.4 3.3 1 1 1 3 3 3 1 Tetratrico peptide repeat FAT PF02259.23 gi|330507433|ref|YP_004383861.1| - 0.0012 18.2 0.3 0.16 11.1 0.1 2.3 2 0 0 2 2 2 1 FAT domain TOM20_plant PF06552.12 gi|330507433|ref|YP_004383861.1| - 0.02 14.7 1.3 26 4.5 0.0 3.6 2 1 0 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 Coatomer_E PF04733.14 gi|330507433|ref|YP_004383861.1| - 0.02 14.3 0.1 3.8 6.8 0.0 2.4 2 0 0 2 2 2 0 Coatomer epsilon subunit DUF5588 PF17826.1 gi|330507433|ref|YP_004383861.1| - 0.038 12.9 0.2 0.35 9.7 0.0 2.3 2 2 0 2 2 2 0 Family of unknown function (DUF5588) SRP_TPR_like PF17004.5 gi|330507433|ref|YP_004383861.1| - 0.049 13.7 0.0 3.5 7.7 0.0 3.1 2 2 2 4 4 3 0 Putative TPR-like repeat TPR_20 PF14561.6 gi|330507433|ref|YP_004383861.1| - 0.088 13.2 2.3 7.8 6.9 0.0 3.6 3 2 1 4 4 3 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|330507433|ref|YP_004383861.1| - 0.11 12.4 0.9 23 4.9 0.1 2.9 2 1 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal Exonuc_VII_S PF02609.16 gi|330507433|ref|YP_004383861.1| - 2.5 8.2 7.8 20 5.3 0.1 4.1 4 0 0 4 4 4 0 Exonuclease VII small subunit ANAPC5 PF12862.7 gi|330507433|ref|YP_004383861.1| - 3.7 7.7 7.1 31 4.7 0.0 4.0 4 1 0 4 4 2 0 Anaphase-promoting complex subunit 5 NTPase_1 PF03266.15 gi|330507434|ref|YP_004383862.1| - 1.3e-43 148.8 0.0 1.5e-43 148.7 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|330507434|ref|YP_004383862.1| - 5.3e-07 29.4 0.0 6.5e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) RsgA_GTPase PF03193.16 gi|330507434|ref|YP_004383862.1| - 2.5e-05 24.3 0.3 4.5e-05 23.4 0.3 1.3 1 0 0 1 1 1 1 RsgA GTPase MeaB PF03308.16 gi|330507434|ref|YP_004383862.1| - 0.00014 21.0 0.8 0.00034 19.7 0.2 1.8 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|330507434|ref|YP_004383862.1| - 0.0024 17.9 0.3 0.0041 17.2 0.3 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|330507434|ref|YP_004383862.1| - 0.0027 17.5 0.0 0.0053 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|330507434|ref|YP_004383862.1| - 0.0099 16.3 0.4 0.013 15.9 0.4 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|330507434|ref|YP_004383862.1| - 0.01 16.1 1.0 0.03 14.6 1.0 2.1 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|330507434|ref|YP_004383862.1| - 0.019 14.9 0.6 0.071 13.0 0.3 1.9 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.27 gi|330507434|ref|YP_004383862.1| - 0.019 15.5 0.0 0.036 14.6 0.0 1.3 1 1 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 gi|330507434|ref|YP_004383862.1| - 0.028 15.0 0.1 0.057 14.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|330507434|ref|YP_004383862.1| - 0.04 14.2 0.1 0.063 13.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain Ploopntkinase3 PF18751.1 gi|330507434|ref|YP_004383862.1| - 0.048 13.6 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 FeoB_N PF02421.18 gi|330507434|ref|YP_004383862.1| - 0.052 13.1 0.0 0.096 12.2 0.0 1.5 1 0 0 1 1 1 0 Ferrous iron transport protein B cobW PF02492.19 gi|330507434|ref|YP_004383862.1| - 0.09 12.4 0.2 0.29 10.7 0.1 1.8 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|330507434|ref|YP_004383862.1| - 0.096 12.4 1.8 0.59 9.8 1.9 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|330507434|ref|YP_004383862.1| - 0.11 12.9 0.6 0.22 12.0 0.6 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|330507434|ref|YP_004383862.1| - 0.11 11.6 1.3 0.13 11.4 0.3 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_29 PF13555.6 gi|330507434|ref|YP_004383862.1| - 0.12 12.1 0.2 0.23 11.2 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|330507434|ref|YP_004383862.1| - 0.13 12.4 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|330507434|ref|YP_004383862.1| - 0.28 11.5 1.9 4.8 7.5 0.7 2.4 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|330507434|ref|YP_004383862.1| - 0.64 9.8 1.9 1.5 8.5 1.5 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Toprim PF01751.22 gi|330507435|ref|YP_004383863.1| - 4.4e-05 23.6 0.0 0.0001 22.5 0.0 1.6 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|330507435|ref|YP_004383863.1| - 0.00019 21.9 0.0 0.00047 20.6 0.0 1.7 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|330507435|ref|YP_004383863.1| - 0.0028 18.1 0.0 0.0039 17.6 0.0 1.3 1 0 0 1 1 1 1 Toprim-like DUF167 PF02594.16 gi|330507436|ref|YP_004383864.1| - 2.5e-18 65.9 0.0 3e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 AICARFT_IMPCHas PF01808.18 gi|330507437|ref|YP_004383865.1| - 4.7e-85 285.6 0.0 6e-85 285.3 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme NosD PF05048.13 gi|330507438|ref|YP_004383866.1| - 4.9e-44 150.4 28.9 9.4e-23 80.7 6.8 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|330507438|ref|YP_004383866.1| - 6.5e-32 110.6 19.3 1.8e-18 66.9 11.1 3.2 1 1 2 3 3 3 3 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|330507438|ref|YP_004383866.1| - 0.00021 21.2 22.7 0.00043 20.2 0.8 4.3 1 1 0 2 2 2 1 Pectate lyase superfamily protein DUF1565 PF07602.11 gi|330507438|ref|YP_004383866.1| - 0.00022 20.7 12.3 0.00097 18.5 3.7 3.0 1 1 2 3 3 3 2 Protein of unknown function (DUF1565) TRM PF02005.16 gi|330507439|ref|YP_004383867.1| - 7.8e-97 324.8 0.0 9.5e-97 324.5 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|330507439|ref|YP_004383867.1| - 0.00011 21.8 0.1 0.00057 19.5 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase small domain Met_10 PF02475.16 gi|330507439|ref|YP_004383867.1| - 0.0055 16.5 0.0 0.0072 16.1 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|330507439|ref|YP_004383867.1| - 0.027 13.9 0.1 0.039 13.4 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|330507439|ref|YP_004383867.1| - 0.027 15.2 0.0 0.063 14.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|330507439|ref|YP_004383867.1| - 0.052 13.2 0.1 0.39 10.3 0.1 1.9 1 1 1 2 2 2 0 Conserved hypothetical protein 95 Rubredoxin_2 PF18073.1 gi|330507439|ref|YP_004383867.1| - 0.054 13.2 1.3 1 9.2 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain Methyltransf_16 PF10294.9 gi|330507439|ref|YP_004383867.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase F420_oxidored PF03807.17 gi|330507440|ref|YP_004383868.1| - 1.2e-17 64.2 0.1 3e-17 63.0 0.0 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.17 gi|330507440|ref|YP_004383868.1| - 0.0028 16.7 0.0 0.0043 16.1 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase Semialdhyde_dh PF01118.24 gi|330507440|ref|YP_004383868.1| - 0.016 15.7 0.0 0.028 14.9 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain TraB PF01963.17 gi|330507441|ref|YP_004383869.1| - 1.7e-30 106.8 0.0 2.5e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 TraB family Claudin_2 PF13903.6 gi|330507441|ref|YP_004383869.1| - 0.16 11.7 5.3 0.16 11.7 4.2 1.6 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF2207 PF09972.9 gi|330507441|ref|YP_004383869.1| - 0.19 10.4 4.8 0.67 8.7 4.9 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) CBS PF00571.28 gi|330507442|ref|YP_004383870.1| - 5e-25 87.7 4.9 1.2e-11 44.9 0.5 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|330507442|ref|YP_004383870.1| - 2.1e-11 43.6 14.5 2.8e-06 26.8 3.1 3.7 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|330507442|ref|YP_004383870.1| - 7.9e-05 22.4 3.8 7.9e-05 22.4 3.8 2.4 3 0 0 3 3 3 1 Peptidase M50B-like GAF_2 PF13185.6 gi|330507442|ref|YP_004383870.1| - 0.074 13.4 0.1 2.1 8.7 0.0 2.5 2 0 0 2 2 2 0 GAF domain GAF PF01590.26 gi|330507442|ref|YP_004383870.1| - 0.089 13.4 0.2 4 8.1 0.0 2.3 1 1 1 2 2 2 0 GAF domain Aldolase_II PF00596.21 gi|330507443|ref|YP_004383871.1| - 1.2e-32 113.3 0.3 1.4e-32 113.2 0.3 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Peptidase_S8 PF00082.22 gi|330507444|ref|YP_004383872.1| - 1.5e-46 159.0 0.3 4.3e-46 157.5 0.0 1.7 2 0 0 2 2 2 1 Subtilase family Inhibitor_I9 PF05922.16 gi|330507444|ref|YP_004383872.1| - 0.032 14.9 0.0 0.057 14.1 0.0 1.4 1 0 0 1 1 1 0 Peptidase inhibitor I9 Rhodanese PF00581.20 gi|330507445|ref|YP_004383873.1| - 2.7e-22 79.3 0.0 8.6e-10 39.1 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain NosD PF05048.13 gi|330507446|ref|YP_004383874.1| - 7.6e-45 153.1 44.0 3.9e-27 95.1 20.9 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|330507446|ref|YP_004383874.1| - 4.9e-29 101.2 44.5 9.4e-17 61.3 16.5 2.7 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|330507446|ref|YP_004383874.1| - 3.4e-07 29.8 27.4 0.0085 15.5 4.6 4.2 1 1 3 4 4 4 4 Protein of unknown function (DUF1565) DsbD PF02683.15 gi|330507448|ref|YP_004383876.1| - 4e-08 33.4 15.5 5.7e-08 32.9 15.5 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|330507448|ref|YP_004383876.1| - 6.8e-07 29.4 23.0 2.9e-06 27.3 13.2 2.2 1 1 1 2 2 2 2 Cytochrome C biogenesis protein transmembrane region Glutaredoxin PF00462.24 gi|330507448|ref|YP_004383876.1| - 0.0014 18.8 0.0 0.0032 17.6 0.0 1.6 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|330507448|ref|YP_004383876.1| - 0.0097 15.9 0.1 0.016 15.3 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin domain OrfB_IS605 PF01385.19 gi|330507449|ref|YP_004383877.1| - 1.1e-24 87.0 0.1 1.9e-24 86.2 0.1 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|330507449|ref|YP_004383877.1| - 8.6e-24 83.3 1.4 2.5e-23 81.8 0.6 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|330507449|ref|YP_004383877.1| - 3.5e-06 26.4 0.3 7.2e-06 25.4 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HypA PF01155.19 gi|330507449|ref|YP_004383877.1| - 0.018 15.1 0.1 0.046 13.7 0.1 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|330507449|ref|YP_004383877.1| - 0.055 13.0 1.5 0.63 9.6 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|330507449|ref|YP_004383877.1| - 0.068 12.6 5.1 0.87 9.1 5.1 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|330507449|ref|YP_004383877.1| - 0.52 10.3 3.7 1.3 9.0 3.7 1.7 1 0 0 1 1 1 0 SprT-like zinc ribbon domain RecR PF02132.15 gi|330507449|ref|YP_004383877.1| - 0.59 9.8 6.5 0.36 10.4 1.5 2.8 2 1 1 3 3 3 0 RecR protein UPF0547 PF10571.9 gi|330507449|ref|YP_004383877.1| - 1.5 9.0 5.1 1.3 9.2 0.7 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Fae PF08714.11 gi|330507450|ref|YP_004383878.1| - 1.2e-70 236.6 0.1 1.9e-70 235.9 0.1 1.3 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|330507450|ref|YP_004383878.1| - 6.1e-21 75.1 0.5 1e-20 74.3 0.3 1.5 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|330507450|ref|YP_004383878.1| - 0.00011 21.7 0.3 0.00032 20.1 0.3 1.8 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.17 gi|330507450|ref|YP_004383878.1| - 0.00076 19.0 1.5 0.095 12.1 0.1 2.3 1 1 1 2 2 2 2 PcrB family ATP-sulfurylase PF01747.17 gi|330507450|ref|YP_004383878.1| - 0.0027 17.2 0.0 0.0043 16.6 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase NanE PF04131.14 gi|330507450|ref|YP_004383878.1| - 0.0074 15.5 0.2 0.042 13.0 0.1 2.1 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|330507450|ref|YP_004383878.1| - 0.14 11.2 2.2 0.22 10.5 2.1 1.4 1 1 0 1 1 1 0 FMN-dependent dehydrogenase DDE_Tnp_1 PF01609.21 gi|330507451|ref|YP_004383879.1| - 7.7e-15 55.1 0.0 8e-14 51.8 0.0 2.1 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|330507452|ref|YP_004383880.1| - 2.6e-21 75.4 0.0 4.8e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|330507452|ref|YP_004383880.1| - 1.5e-15 57.4 4.6 5e-15 55.7 4.6 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|330507452|ref|YP_004383880.1| - 3e-05 23.8 0.3 0.00012 21.8 0.3 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.6 gi|330507452|ref|YP_004383880.1| - 3.1e-05 24.2 0.4 5.3e-05 23.4 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain EnY2 PF10163.9 gi|330507452|ref|YP_004383880.1| - 0.052 13.9 0.1 0.12 12.8 0.1 1.6 1 0 0 1 1 1 0 Transcription factor e(y)2 VAPB_antitox PF02697.14 gi|330507453|ref|YP_004383881.1| - 0.0025 18.6 0.8 0.0029 18.3 0.8 1.2 1 0 0 1 1 1 1 Putative antitoxin MatP_C PF17414.2 gi|330507453|ref|YP_004383881.1| - 0.0056 16.8 0.2 0.0067 16.6 0.2 1.1 1 0 0 1 1 1 1 MatP C-terminal ribbon-helix-helix domain Metalloenzyme PF01676.18 gi|330507454|ref|YP_004383882.1| - 1.3e-10 41.1 0.0 3.4e-10 39.7 0.0 1.6 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|330507454|ref|YP_004383882.1| - 3.6e-09 36.7 0.1 1.3e-08 34.9 0.1 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|330507454|ref|YP_004383882.1| - 5.8e-09 35.8 0.0 1.8e-08 34.2 0.0 1.7 2 0 0 2 2 2 1 Sulfatase Alk_phosphatase PF00245.20 gi|330507454|ref|YP_004383882.1| - 5.5e-05 22.3 0.0 0.00014 21.0 0.0 1.6 2 0 0 2 2 2 1 Alkaline phosphatase DUF3795 PF12675.7 gi|330507455|ref|YP_004383883.1| - 3.5e-13 49.7 3.7 6.7e-13 48.9 3.7 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) ZZ PF00569.17 gi|330507455|ref|YP_004383883.1| - 9.8 6.1 10.2 2.1 8.2 5.2 2.5 2 1 0 2 2 2 0 Zinc finger, ZZ type DUF169 PF02596.15 gi|330507456|ref|YP_004383884.1| - 1.1e-53 182.3 0.0 1.3e-53 182.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 tRNA-Thr_ED PF08915.11 gi|330507458|ref|YP_004383886.1| - 1.4e-49 167.7 0.0 2.7e-49 166.8 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|330507458|ref|YP_004383886.1| - 2.2e-16 60.3 0.9 4.4e-16 59.4 0.9 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|330507458|ref|YP_004383886.1| - 5.9e-16 58.4 0.1 1.3e-15 57.3 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain DDE_Tnp_1 PF01609.21 gi|330507459|ref|YP_004383887.1| - 1.9e-25 89.8 0.0 3.3e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|330507459|ref|YP_004383887.1| - 0.014 14.7 0.3 0.021 14.1 0.3 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|330507459|ref|YP_004383887.1| - 0.019 13.3 0.0 0.03 12.6 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 Tudor_FRX1 PF18336.1 gi|330507459|ref|YP_004383887.1| - 0.075 13.0 1.0 1.4 8.9 0.1 2.8 3 0 0 3 3 3 0 Fragile X mental retardation Tudor domain Beta_helix PF13229.6 gi|330507460|ref|YP_004383888.1| - 2.5e-45 154.1 99.2 1.6e-17 63.8 22.3 3.2 1 1 3 4 4 4 4 Right handed beta helix region NosD PF05048.13 gi|330507460|ref|YP_004383888.1| - 2.1e-41 141.8 59.1 1.5e-21 76.8 23.3 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.7 gi|330507460|ref|YP_004383888.1| - 8.1e-06 25.8 25.0 1.5e-05 25.0 15.3 2.9 2 1 0 2 2 2 2 Pectate lyase superfamily protein Acylphosphatase PF00708.18 gi|330507461|ref|YP_004383889.1| - 9.6e-13 48.4 0.0 1.7e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase Radical_SAM_N PF08497.10 gi|330507462|ref|YP_004383890.1| - 6.1e-127 423.0 0.0 8.1e-127 422.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|330507462|ref|YP_004383890.1| - 4.3e-31 108.3 0.0 7.9e-31 107.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|330507462|ref|YP_004383890.1| - 4.5e-15 56.4 0.2 1.8e-14 54.5 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Hpr_kinase_C PF07475.12 gi|330507463|ref|YP_004383891.1| - 6.2e-06 25.8 0.1 4.1e-05 23.2 0.1 2.2 1 1 0 1 1 1 1 HPr Serine kinase C-terminal domain PEPCK_ATP PF01293.20 gi|330507463|ref|YP_004383891.1| - 0.00093 18.0 0.0 0.0012 17.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_33 PF13671.6 gi|330507463|ref|YP_004383891.1| - 0.0052 16.9 0.0 0.012 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|330507463|ref|YP_004383891.1| - 0.1 12.4 0.1 0.23 11.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|330507463|ref|YP_004383891.1| - 0.15 12.3 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain His_Phos_1 PF00300.22 gi|330507464|ref|YP_004383892.1| - 1.3e-43 149.0 0.3 1.5e-43 148.8 0.3 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Sugar-bind PF04198.13 gi|330507464|ref|YP_004383892.1| - 0.17 11.0 0.0 0.36 9.9 0.0 1.4 2 0 0 2 2 2 0 Putative sugar-binding domain Rotamase PF00639.21 gi|330507465|ref|YP_004383893.1| - 2.5e-25 89.3 0.0 3.1e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_3 PF13616.6 gi|330507465|ref|YP_004383893.1| - 7.5e-25 87.7 0.0 1.1e-24 87.1 0.0 1.3 1 1 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 gi|330507465|ref|YP_004383893.1| - 5.2e-10 40.2 0.0 5.8e-10 40.1 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain DUF2291 PF10054.9 gi|330507465|ref|YP_004383893.1| - 0.19 11.4 0.1 0.31 10.7 0.0 1.4 2 0 0 2 2 2 0 Predicted periplasmic lipoprotein (DUF2291) Cyclase PF04199.13 gi|330507466|ref|YP_004383894.1| - 9.5e-18 64.7 0.0 1.3e-17 64.3 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase PAS PF00989.25 gi|330507467|ref|YP_004383895.1| - 1.7e-45 153.7 0.3 3.9e-15 55.8 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|330507467|ref|YP_004383895.1| - 2.2e-39 133.9 0.8 5.7e-11 42.6 0.1 4.5 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.10 gi|330507467|ref|YP_004383895.1| - 3.9e-38 130.1 0.0 3.2e-13 49.9 0.0 4.4 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|330507467|ref|YP_004383895.1| - 8.6e-31 106.8 0.0 1.6e-30 105.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|330507467|ref|YP_004383895.1| - 1.6e-27 95.9 0.4 3.5e-27 94.8 0.4 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|330507467|ref|YP_004383895.1| - 5.3e-26 90.1 0.0 3.9e-05 23.6 0.0 4.9 4 0 0 4 4 4 4 PAS domain HisKA PF00512.25 gi|330507467|ref|YP_004383895.1| - 3e-20 72.0 0.4 2.2e-19 69.2 0.0 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|330507467|ref|YP_004383895.1| - 3.6e-18 65.6 0.2 6.4e-06 26.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_10 PF13596.6 gi|330507467|ref|YP_004383895.1| - 3.9e-05 24.2 0.0 0.029 14.9 0.0 3.2 3 0 0 3 3 3 1 PAS domain GAF PF01590.26 gi|330507467|ref|YP_004383895.1| - 7e-05 23.5 0.0 0.00021 21.9 0.0 1.9 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|330507467|ref|YP_004383895.1| - 0.00046 20.5 0.0 0.015 15.6 0.0 2.9 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|330507467|ref|YP_004383895.1| - 0.001 19.2 0.2 0.69 10.1 0.0 4.5 5 2 0 5 5 5 1 PAS fold HATPase_c_3 PF13589.6 gi|330507467|ref|YP_004383895.1| - 0.027 14.3 0.0 0.057 13.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GRIP PF01465.20 gi|330507467|ref|YP_004383895.1| - 0.12 12.3 0.0 3.3 7.7 0.0 2.5 2 0 0 2 2 2 0 GRIP domain Docking PF08990.11 gi|330507467|ref|YP_004383895.1| - 6.2 6.5 10.3 0.081 12.6 1.5 2.4 3 0 0 3 3 3 0 Erythronolide synthase docking Rep_fac_C PF08542.11 gi|330507468|ref|YP_004383896.1| - 2.3e-22 79.2 0.1 6.2e-22 77.8 0.1 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|330507468|ref|YP_004383896.1| - 1.6e-15 57.7 0.0 3.4e-15 56.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|330507468|ref|YP_004383896.1| - 1.6e-14 54.0 0.0 1.2e-10 41.4 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|330507468|ref|YP_004383896.1| - 1.3e-08 34.8 0.0 9.3e-08 32.0 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|330507468|ref|YP_004383896.1| - 3.6e-06 27.5 0.8 0.0015 18.9 0.0 2.7 2 1 1 3 3 3 1 AAA ATPase domain Rad17 PF03215.15 gi|330507468|ref|YP_004383896.1| - 4.8e-06 26.6 0.0 9.5e-06 25.7 0.0 1.5 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|330507468|ref|YP_004383896.1| - 0.00013 22.0 0.0 0.00027 21.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|330507468|ref|YP_004383896.1| - 0.00023 20.6 0.0 0.085 12.2 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI ResIII PF04851.15 gi|330507468|ref|YP_004383896.1| - 0.00033 20.7 0.0 0.0017 18.4 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_assoc_2 PF16193.5 gi|330507468|ref|YP_004383896.1| - 0.00044 20.5 0.0 0.0011 19.3 0.0 1.7 1 0 0 1 1 1 1 AAA C-terminal domain AAA_3 PF07726.11 gi|330507468|ref|YP_004383896.1| - 0.00068 19.5 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|330507468|ref|YP_004383896.1| - 0.002 17.4 0.0 0.02 14.1 0.0 2.1 1 1 1 2 2 2 1 TIP49 P-loop domain SNF2_N PF00176.23 gi|330507468|ref|YP_004383896.1| - 0.0028 16.4 0.0 0.024 13.4 0.0 2.0 1 1 0 2 2 2 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|330507468|ref|YP_004383896.1| - 0.011 16.0 0.3 4.9 7.4 0.0 2.5 1 1 1 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|330507468|ref|YP_004383896.1| - 0.011 15.4 0.0 4.6 6.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|330507468|ref|YP_004383896.1| - 0.016 14.8 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region MCM PF00493.23 gi|330507468|ref|YP_004383896.1| - 0.016 14.3 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 MCM P-loop domain DNA_pol3_delta PF06144.13 gi|330507468|ref|YP_004383896.1| - 0.039 13.7 0.0 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 DNA polymerase III, delta subunit IstB_IS21 PF01695.17 gi|330507468|ref|YP_004383896.1| - 0.085 12.6 0.0 0.37 10.5 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|330507468|ref|YP_004383896.1| - 0.14 12.1 0.1 1.7 8.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|330507468|ref|YP_004383896.1| - 0.15 12.5 0.0 0.36 11.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|330507468|ref|YP_004383896.1| - 0.17 11.6 0.0 0.43 10.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain tRNA-synt_1 PF00133.22 gi|330507469|ref|YP_004383897.1| - 1.7e-193 644.2 0.2 2e-193 643.9 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|330507469|ref|YP_004383897.1| - 1.6e-34 119.0 0.0 4.7e-34 117.5 0.0 1.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|330507469|ref|YP_004383897.1| - 2.9e-26 92.1 1.0 1.8e-11 43.4 0.1 3.6 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|330507469|ref|YP_004383897.1| - 5.4e-06 26.0 0.0 6.9e-05 22.3 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|330507469|ref|YP_004383897.1| - 0.00017 20.6 0.0 0.00085 18.3 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) DNase-RNase PF02577.14 gi|330507470|ref|YP_004383898.1| - 1.2e-39 134.9 0.1 1.4e-39 134.7 0.1 1.1 1 0 0 1 1 1 1 Bifunctional nuclease Lsr2 PF11774.8 gi|330507470|ref|YP_004383898.1| - 0.11 12.6 0.1 0.15 12.2 0.1 1.2 1 0 0 1 1 1 0 Lsr2 OrfB_Zn_ribbon PF07282.11 gi|330507471|ref|YP_004383899.1| - 3.8e-22 78.0 0.0 1.3e-21 76.2 0.0 2.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330507471|ref|YP_004383899.1| - 3.6e-07 30.4 0.5 3.6e-07 30.4 0.5 1.8 2 0 0 2 2 2 1 Probable transposase DZR PF12773.7 gi|330507471|ref|YP_004383899.1| - 0.032 14.3 0.1 0.082 12.9 0.1 1.6 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|330507471|ref|YP_004383899.1| - 0.064 13.3 0.0 0.18 11.8 0.0 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_2 PF03107.16 gi|330507471|ref|YP_004383899.1| - 0.096 13.0 0.1 0.21 11.9 0.1 1.5 1 0 0 1 1 1 0 C1 domain DUF1646 PF07854.12 gi|330507472|ref|YP_004383900.1| - 2.3e-118 395.6 28.6 2.8e-118 395.3 28.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) DUF2645 PF10840.8 gi|330507472|ref|YP_004383900.1| - 6.5 7.5 7.0 1.1 9.9 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2645) DUF1646 PF07854.12 gi|330507473|ref|YP_004383901.1| - 3.8e-32 112.0 16.6 4.7e-32 111.7 16.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) FSAP_sig_propep PF03032.15 gi|330507473|ref|YP_004383901.1| - 1.7 8.7 0.0 1.7 8.7 0.0 2.7 3 0 0 3 3 3 0 Frog skin active peptide family signal and propeptide DUF1646 PF07854.12 gi|330507474|ref|YP_004383902.1| - 9.7e-114 380.3 31.6 1.1e-113 380.1 31.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Thr_synth_N PF14821.6 gi|330507474|ref|YP_004383902.1| - 0.078 13.2 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Threonine synthase N terminus HrcA_DNA-bdg PF03444.15 gi|330507475|ref|YP_004383903.1| - 7.9e-27 92.7 0.0 1.8e-26 91.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|330507475|ref|YP_004383903.1| - 3.4e-15 56.2 0.2 6.2e-12 45.8 0.0 3.2 3 0 0 3 3 3 2 CBS domain DUF1646 PF07854.12 gi|330507475|ref|YP_004383903.1| - 2.6e-10 40.2 1.5 4.5e-10 39.4 1.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Rrf2 PF02082.20 gi|330507475|ref|YP_004383903.1| - 3e-07 30.7 0.1 1.1e-06 28.9 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|330507475|ref|YP_004383903.1| - 0.03 14.3 0.1 0.066 13.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain MarR_2 PF12802.7 gi|330507475|ref|YP_004383903.1| - 0.065 13.1 0.1 0.2 11.6 0.1 1.9 1 0 0 1 1 1 0 MarR family DUF1646 PF07854.12 gi|330507476|ref|YP_004383904.1| - 9e-118 393.6 28.2 1.1e-117 393.3 28.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) DUF2645 PF10840.8 gi|330507476|ref|YP_004383904.1| - 5.7 7.6 6.8 1.1 9.9 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2645) OrfB_Zn_ribbon PF07282.11 gi|330507477|ref|YP_004383905.1| - 5.3e-19 67.9 1.2 2.4e-18 65.8 0.1 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330507477|ref|YP_004383905.1| - 1.4e-07 31.8 0.1 2.2e-07 31.1 0.1 1.3 1 0 0 1 1 1 1 Probable transposase DUF1646 PF07854.12 gi|330507478|ref|YP_004383906.1| - 3.1e-31 109.0 20.5 4e-31 108.6 20.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) FSAP_sig_propep PF03032.15 gi|330507478|ref|YP_004383906.1| - 0.011 15.7 0.1 0.028 14.4 0.1 1.7 1 0 0 1 1 1 0 Frog skin active peptide family signal and propeptide Med26_M PF15694.5 gi|330507479|ref|YP_004383907.1| - 0.21 11.6 0.6 0.23 11.5 0.6 1.1 1 0 0 1 1 1 0 Mediator complex subunit 26 middle domain Usp PF00582.26 gi|330507480|ref|YP_004383908.1| - 6.1e-38 130.5 0.3 4e-18 66.3 0.0 2.8 2 1 0 2 2 2 2 Universal stress protein family B12-binding PF02310.19 gi|330507480|ref|YP_004383908.1| - 0.061 13.4 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 B12 binding domain RQC PF09382.10 gi|330507480|ref|YP_004383908.1| - 0.063 13.1 0.0 3.1 7.6 0.0 2.7 3 0 0 3 3 3 0 RQC domain DUF1646 PF07854.12 gi|330507481|ref|YP_004383909.1| - 2e-114 382.6 32.8 2.6e-114 382.2 32.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Usp PF00582.26 gi|330507482|ref|YP_004383910.1| - 8.6e-35 120.3 4.3 3.3e-17 63.3 0.2 2.1 2 0 0 2 2 2 2 Universal stress protein family DUF2316 PF10078.9 gi|330507482|ref|YP_004383910.1| - 0.033 14.4 0.1 0.068 13.4 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) Flagellin_IN PF07196.13 gi|330507482|ref|YP_004383910.1| - 0.23 11.7 1.6 0.43 10.8 0.5 1.9 2 0 0 2 2 2 0 Flagellin hook IN motif Radical_SAM PF04055.21 gi|330507483|ref|YP_004383911.1| - 0.005 17.2 0.0 0.0083 16.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|330507483|ref|YP_004383911.1| - 0.097 12.7 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Radical_SAM C-terminal domain MtrA PF04208.14 gi|330507483|ref|YP_004383911.1| - 0.15 11.7 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit A Pyr_redox_2 PF07992.14 gi|330507484|ref|YP_004383912.1| - 3.8e-36 124.8 0.9 4.4e-36 124.6 0.9 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|330507484|ref|YP_004383912.1| - 1.2e-21 77.2 0.6 8.8e-17 61.3 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|330507484|ref|YP_004383912.1| - 1e-07 31.4 4.7 2.3e-06 26.9 1.7 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|330507484|ref|YP_004383912.1| - 1e-05 25.1 1.3 1.7e-05 24.4 1.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|330507484|ref|YP_004383912.1| - 1.4e-05 25.5 1.3 0.026 15.1 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|330507484|ref|YP_004383912.1| - 2e-05 23.5 4.9 0.00022 20.1 1.2 2.8 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.17 gi|330507484|ref|YP_004383912.1| - 5.9e-05 22.4 0.4 5.9e-05 22.4 0.4 1.6 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|330507484|ref|YP_004383912.1| - 0.00013 21.7 2.4 0.0024 17.5 2.0 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|330507484|ref|YP_004383912.1| - 0.00034 20.0 0.5 0.00058 19.2 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|330507484|ref|YP_004383912.1| - 0.0011 18.1 13.1 0.0012 18.1 2.0 2.9 3 1 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|330507484|ref|YP_004383912.1| - 0.0021 18.5 0.1 0.042 14.3 0.0 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|330507484|ref|YP_004383912.1| - 0.0044 17.2 1.5 0.0044 17.2 1.5 2.4 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|330507484|ref|YP_004383912.1| - 0.025 13.6 0.3 0.063 12.3 0.3 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein K_oxygenase PF13434.6 gi|330507484|ref|YP_004383912.1| - 0.034 13.3 0.2 6.9 5.7 0.0 2.4 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|330507484|ref|YP_004383912.1| - 0.055 12.3 0.6 0.12 11.2 0.6 1.5 2 0 0 2 2 2 0 Tryptophan halogenase ELFV_dehydrog PF00208.21 gi|330507484|ref|YP_004383912.1| - 0.13 12.0 1.0 0.14 11.9 0.0 1.5 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DUF11 PF01345.18 gi|330507485|ref|YP_004383913.1| - 1.4e-13 50.9 0.0 4e-06 27.1 0.0 3.9 4 0 0 4 4 4 2 Domain of unknown function DUF11 LTD PF00932.19 gi|330507485|ref|YP_004383913.1| - 5.9e-11 42.7 0.1 2.2e-10 40.8 0.1 2.0 1 0 0 1 1 1 1 Lamin Tail Domain CARDB PF07705.11 gi|330507485|ref|YP_004383913.1| - 0.1 12.9 0.4 28 5.1 0.0 3.9 4 1 0 4 4 4 0 CARDB HTH_45 PF14947.6 gi|330507486|ref|YP_004383914.1| - 4.5e-22 77.8 0.2 5.3e-22 77.6 0.2 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|330507486|ref|YP_004383914.1| - 0.045 14.2 0.0 0.24 11.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain MarR PF01047.22 gi|330507487|ref|YP_004383915.1| - 0.00028 20.7 0.0 0.00077 19.3 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|330507487|ref|YP_004383915.1| - 0.0003 20.7 0.1 0.00097 19.1 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|330507487|ref|YP_004383915.1| - 0.0009 19.7 0.0 0.0018 18.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|330507487|ref|YP_004383915.1| - 0.0051 17.1 0.0 0.053 13.9 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator DUF2250 PF10007.9 gi|330507487|ref|YP_004383915.1| - 0.0058 16.7 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|330507487|ref|YP_004383915.1| - 0.03 14.2 0.1 0.28 11.1 0.0 2.2 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|330507487|ref|YP_004383915.1| - 0.033 14.2 0.6 0.24 11.5 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|330507487|ref|YP_004383915.1| - 0.051 13.5 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|330507487|ref|YP_004383915.1| - 0.099 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.19 gi|330507487|ref|YP_004383915.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|330507487|ref|YP_004383915.1| - 0.14 11.8 2.1 8.6 6.0 0.0 3.2 4 0 0 4 4 4 0 Winged helix-turn-helix DNA-binding DUF4364 PF14277.6 gi|330507487|ref|YP_004383915.1| - 0.17 11.6 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) LppX_LprAFG PF07161.13 gi|330507488|ref|YP_004383916.1| - 0.046 13.6 2.5 2.3 8.0 1.1 3.0 2 1 0 2 2 2 0 LppX_LprAFG lipoprotein LPAM_1 PF08139.12 gi|330507488|ref|YP_004383916.1| - 0.23 12.0 2.6 0.54 10.9 2.6 1.7 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site SAICAR_synt PF01259.18 gi|330507489|ref|YP_004383917.1| - 1.4e-41 142.8 0.0 2e-41 142.3 0.0 1.2 1 0 0 1 1 1 1 SAICAR synthetase RNA_pol_Rpb4 PF03874.16 gi|330507489|ref|YP_004383917.1| - 0.11 12.8 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb4 Cpn60_TCP1 PF00118.24 gi|330507490|ref|YP_004383918.1| - 6.5e-184 612.1 21.2 7.4e-184 612.0 21.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TrwC PF08751.11 gi|330507490|ref|YP_004383918.1| - 0.12 11.9 0.1 0.36 10.3 0.0 1.8 2 0 0 2 2 2 0 TrwC relaxase Creatininase PF02633.14 gi|330507491|ref|YP_004383919.1| - 7.9e-60 202.3 0.3 8.9e-60 202.1 0.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase STT3 PF02516.14 gi|330507492|ref|YP_004383920.1| - 1.2e-31 110.2 26.7 9.5e-30 103.9 26.7 2.2 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|330507492|ref|YP_004383920.1| - 5.4e-27 93.9 0.4 9.8e-27 93.1 0.4 1.4 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|330507492|ref|YP_004383920.1| - 2.2e-06 28.0 12.3 2.2e-06 28.0 12.3 4.2 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Bac_RepA_C PF18008.1 gi|330507493|ref|YP_004383921.1| - 0.081 13.3 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 Replication initiator protein A C-terminal domain PTPS PF01242.19 gi|330507494|ref|YP_004383922.1| - 6.4e-33 113.3 0.0 6.9e-33 113.2 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase TP_methylase PF00590.20 gi|330507496|ref|YP_004383924.1| - 1.4e-13 51.3 0.0 1.8e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MCR_C PF04609.12 gi|330507497|ref|YP_004383925.1| - 8.7e-10 38.1 1.4 6.2e-09 35.3 1.4 2.3 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MobC PF05713.11 gi|330507497|ref|YP_004383925.1| - 0.13 12.8 0.7 0.46 11.0 0.1 2.2 2 1 0 2 2 2 0 Bacterial mobilisation protein (MobC) PhosphMutase PF10143.9 gi|330507498|ref|YP_004383926.1| - 5.7e-58 195.5 0.0 8.7e-58 195.0 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|330507498|ref|YP_004383926.1| - 2.5e-37 128.6 0.0 2.8e-37 128.4 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily CitF PF04223.12 gi|330507498|ref|YP_004383926.1| - 0.095 11.6 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Citrate lyase, alpha subunit (CitF) ADP_ribosyl_GH PF03747.14 gi|330507499|ref|YP_004383927.1| - 1.3e-61 208.9 0.9 1.4e-61 208.8 0.9 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Semialdhyde_dh PF01118.24 gi|330507500|ref|YP_004383928.1| - 1.4e-32 112.7 0.0 2.4e-32 111.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|330507500|ref|YP_004383928.1| - 3.6e-22 79.3 0.0 5e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.17 gi|330507500|ref|YP_004383928.1| - 0.00019 21.9 0.0 0.00047 20.7 0.0 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|330507500|ref|YP_004383928.1| - 0.095 13.5 0.0 0.16 12.8 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.6 gi|330507500|ref|YP_004383928.1| - 0.11 12.4 0.0 0.69 9.8 0.0 2.0 2 0 0 2 2 2 0 NAD(P)H-binding CBS PF00571.28 gi|330507501|ref|YP_004383929.1| - 9.7e-33 112.4 4.7 5.3e-18 65.2 0.6 2.2 2 0 0 2 2 2 2 CBS domain MreC PF04085.14 gi|330507501|ref|YP_004383929.1| - 0.085 12.8 0.1 2.9 7.8 0.0 2.2 2 0 0 2 2 2 0 rod shape-determining protein MreC ArgJ PF01960.18 gi|330507502|ref|YP_004383930.1| - 1.7e-133 445.0 2.0 2e-133 444.8 2.0 1.0 1 0 0 1 1 1 1 ArgJ family BID PF06393.11 gi|330507502|ref|YP_004383930.1| - 0.0064 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 BH3 interacting domain (BID) Lyase_1 PF00206.20 gi|330507503|ref|YP_004383931.1| - 3.2e-59 200.9 0.0 4.5e-59 200.4 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|330507503|ref|YP_004383931.1| - 4.1e-16 59.5 0.8 2e-15 57.3 0.0 2.7 3 1 0 3 3 3 1 Argininosuccinate lyase C-terminal GDP_Man_Dehyd PF16363.5 gi|330507504|ref|YP_004383932.1| - 2.5e-39 135.6 0.0 1.2e-38 133.4 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|330507504|ref|YP_004383932.1| - 9.9e-39 133.2 0.0 1.2e-38 133.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|330507504|ref|YP_004383932.1| - 3.9e-08 32.6 0.0 1e-06 28.0 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|330507504|ref|YP_004383932.1| - 0.00035 19.8 0.1 0.0016 17.6 0.1 2.0 2 1 0 2 2 2 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|330507504|ref|YP_004383932.1| - 0.00042 19.5 0.1 0.0018 17.4 0.1 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|330507504|ref|YP_004383932.1| - 0.056 12.9 0.0 0.099 12.1 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase KR PF08659.10 gi|330507504|ref|YP_004383932.1| - 0.11 12.3 0.1 0.2 11.5 0.1 1.3 1 0 0 1 1 1 0 KR domain Methyltransf_11 PF08241.12 gi|330507505|ref|YP_004383933.1| - 7.5e-20 71.4 0.0 1.3e-19 70.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330507505|ref|YP_004383933.1| - 5.2e-19 68.5 0.0 6.7e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330507505|ref|YP_004383933.1| - 5.1e-18 65.5 0.0 7.6e-18 64.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330507505|ref|YP_004383933.1| - 7.4e-17 61.9 0.0 1.4e-16 60.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|330507505|ref|YP_004383933.1| - 3.7e-14 52.8 0.0 5.2e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|330507505|ref|YP_004383933.1| - 8.8e-13 48.8 0.0 1.6e-12 48.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|330507505|ref|YP_004383933.1| - 2.3e-10 39.7 0.0 2.9e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Ubie_methyltran PF01209.18 gi|330507505|ref|YP_004383933.1| - 2.4e-08 33.6 0.0 3.1e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|330507505|ref|YP_004383933.1| - 5.2e-06 26.5 0.0 1.1e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|330507505|ref|YP_004383933.1| - 2.1e-05 24.0 0.0 2.9e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|330507505|ref|YP_004383933.1| - 2.2e-05 24.1 0.0 3.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain DREV PF05219.12 gi|330507505|ref|YP_004383933.1| - 4.2e-05 22.8 0.0 6.4e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase TehB PF03848.14 gi|330507505|ref|YP_004383933.1| - 8e-05 22.1 0.0 0.00012 21.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|330507505|ref|YP_004383933.1| - 0.00021 20.8 0.0 0.0052 16.3 0.0 2.3 1 1 0 1 1 1 1 Putative methyltransferase NodS PF05401.11 gi|330507505|ref|YP_004383933.1| - 0.00025 20.7 0.0 0.00037 20.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) DOT1 PF08123.13 gi|330507505|ref|YP_004383933.1| - 0.002 17.7 0.0 0.0035 16.9 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_9 PF08003.11 gi|330507505|ref|YP_004383933.1| - 0.0048 15.9 0.0 0.0087 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|330507505|ref|YP_004383933.1| - 0.022 14.1 0.0 0.032 13.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CheR PF01739.18 gi|330507505|ref|YP_004383933.1| - 0.036 13.5 0.0 2 7.9 0.0 2.1 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain FtsJ PF01728.19 gi|330507505|ref|YP_004383933.1| - 0.088 12.9 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase NNMT_PNMT_TEMT PF01234.17 gi|330507505|ref|YP_004383933.1| - 0.12 11.5 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family Glycos_transf_1 PF00534.20 gi|330507506|ref|YP_004383934.1| - 8.1e-36 123.1 0.0 1.3e-35 122.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330507506|ref|YP_004383934.1| - 4.1e-26 92.0 0.0 1.3e-25 90.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330507506|ref|YP_004383934.1| - 1.8e-20 73.7 0.0 2.7e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|330507506|ref|YP_004383934.1| - 2.8e-11 44.1 0.0 5.8e-11 43.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|330507506|ref|YP_004383934.1| - 8.1e-10 38.9 0.0 1.8e-09 37.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|330507506|ref|YP_004383934.1| - 1.5e-07 31.7 0.0 2.5e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3880 PF12996.7 gi|330507506|ref|YP_004383934.1| - 0.18 11.9 0.0 0.95 9.6 0.0 2.1 2 0 0 2 2 2 0 DUF based on E. rectale Gene description (DUF3880) Glycos_transf_2 PF00535.26 gi|330507507|ref|YP_004383935.1| - 1.1e-30 106.7 0.0 6.8e-30 104.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330507507|ref|YP_004383935.1| - 1.3e-20 74.3 0.0 1.8e-20 73.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|330507507|ref|YP_004383935.1| - 2.2e-07 31.0 0.0 3.8e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|330507507|ref|YP_004383935.1| - 0.00015 21.3 0.0 0.00046 19.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|330507507|ref|YP_004383935.1| - 0.002 17.6 0.1 0.02 14.4 0.1 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 ABC2_membrane PF01061.24 gi|330507508|ref|YP_004383936.1| - 7.1e-25 87.7 25.3 7.1e-25 87.7 25.3 1.4 2 0 0 2 2 2 1 ABC-2 type transporter Gram_pos_anchor PF00746.21 gi|330507508|ref|YP_004383936.1| - 0.49 10.4 0.1 0.49 10.4 0.1 3.2 5 0 0 5 5 5 0 LPXTG cell wall anchor motif ABC_tran PF00005.27 gi|330507509|ref|YP_004383937.1| - 8.6e-23 81.4 0.0 5.5e-22 78.8 0.0 2.0 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330507509|ref|YP_004383937.1| - 1.7e-06 28.1 0.2 6.6e-05 22.9 0.1 2.3 2 1 1 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|330507509|ref|YP_004383937.1| - 1.2e-05 25.9 0.0 2e-05 25.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|330507509|ref|YP_004383937.1| - 2.5e-05 23.9 0.0 5.4e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|330507509|ref|YP_004383937.1| - 0.00067 20.1 0.2 0.0098 16.3 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|330507509|ref|YP_004383937.1| - 0.0018 18.2 0.1 0.013 15.4 0.0 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain NTPase_1 PF03266.15 gi|330507509|ref|YP_004383937.1| - 0.0026 17.7 0.3 1.3 8.9 0.0 2.2 2 0 0 2 2 2 2 NTPase SMC_N PF02463.19 gi|330507509|ref|YP_004383937.1| - 0.0029 17.1 0.2 0.055 12.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_14 PF13173.6 gi|330507509|ref|YP_004383937.1| - 0.012 15.7 0.2 0.22 11.6 0.2 2.5 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|330507509|ref|YP_004383937.1| - 0.015 15.0 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|330507509|ref|YP_004383937.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|330507509|ref|YP_004383937.1| - 0.041 14.3 0.0 0.059 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|330507509|ref|YP_004383937.1| - 0.065 13.2 0.1 0.76 9.8 0.0 2.5 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|330507509|ref|YP_004383937.1| - 0.1 12.5 0.1 0.64 9.9 0.0 1.9 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|330507509|ref|YP_004383937.1| - 0.11 13.0 0.0 0.58 10.6 0.0 2.1 2 0 0 2 2 2 0 RNA helicase AAA_18 PF13238.6 gi|330507509|ref|YP_004383937.1| - 0.12 12.9 0.3 0.76 10.3 0.2 2.3 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|330507509|ref|YP_004383937.1| - 0.17 11.6 0.1 0.58 9.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain LTD PF00932.19 gi|330507511|ref|YP_004383939.1| - 3.8e-23 82.0 1.5 4.8e-23 81.7 1.5 1.1 1 0 0 1 1 1 1 Lamin Tail Domain Transposase_20 PF02371.16 gi|330507512|ref|YP_004383940.1| - 5.9e-25 87.4 0.0 1.3e-24 86.3 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330507512|ref|YP_004383940.1| - 9.3e-23 80.8 0.2 3.7e-22 78.9 0.0 2.0 2 0 0 2 2 2 1 Transposase YfkB PF08756.10 gi|330507512|ref|YP_004383940.1| - 0.0059 16.4 0.1 0.015 15.1 0.1 1.7 1 0 0 1 1 1 1 YfkB-like domain UPF0261 PF06792.11 gi|330507512|ref|YP_004383940.1| - 0.12 11.3 0.1 0.79 8.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0261) DUF1056 PF06341.11 gi|330507513|ref|YP_004383941.1| - 0.26 11.6 3.3 1.9 8.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1056) POR PF01558.18 gi|330507514|ref|YP_004383942.1| - 7.6e-40 136.8 0.2 9e-40 136.6 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|330507515|ref|YP_004383943.1| - 9.5e-11 41.1 17.3 1.3e-05 24.8 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330507515|ref|YP_004383943.1| - 2.6e-07 30.7 15.4 4.2e-07 30.0 15.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330507515|ref|YP_004383943.1| - 2.3e-06 27.7 10.5 0.0061 16.7 3.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330507515|ref|YP_004383943.1| - 1.4e-05 24.9 19.7 0.0025 17.8 7.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330507515|ref|YP_004383943.1| - 2.9e-05 24.9 13.2 0.013 16.5 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|330507515|ref|YP_004383943.1| - 6.3e-05 23.5 15.3 0.00023 21.7 15.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330507515|ref|YP_004383943.1| - 0.00019 21.3 13.1 0.062 13.4 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330507515|ref|YP_004383943.1| - 0.00079 19.5 16.0 0.016 15.3 16.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330507515|ref|YP_004383943.1| - 0.0015 19.1 13.2 0.16 12.5 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330507515|ref|YP_004383943.1| - 0.0022 18.7 11.7 0.19 12.5 0.9 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|330507515|ref|YP_004383943.1| - 0.0076 16.7 14.3 0.2 12.3 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|330507515|ref|YP_004383943.1| - 0.031 14.8 13.8 0.38 11.3 4.0 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|330507515|ref|YP_004383943.1| - 0.09 13.2 16.6 0.41 11.1 3.8 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330507515|ref|YP_004383943.1| - 4.1 8.6 19.6 3.8 8.7 6.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|330507515|ref|YP_004383943.1| - 7.5 7.5 14.7 9 7.2 2.2 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|330507516|ref|YP_004383944.1| - 3.2e-66 223.4 0.0 4.2e-66 223.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|330507516|ref|YP_004383944.1| - 5.5e-30 103.7 0.1 1.1e-29 102.8 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|330507516|ref|YP_004383944.1| - 1.9e-07 31.0 0.1 4.1e-07 29.9 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|330507517|ref|YP_004383945.1| - 6.3e-27 94.2 0.0 9.3e-27 93.7 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IMP_cyclohyd PF07826.11 gi|330507518|ref|YP_004383946.1| - 8.8e-62 208.1 0.0 1e-61 207.9 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein FTR_C PF02741.15 gi|330507519|ref|YP_004383947.1| - 3.4e-64 215.4 1.1 3.4e-64 215.4 1.1 1.4 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.18 gi|330507519|ref|YP_004383947.1| - 5.8e-60 201.3 0.1 1.6e-59 199.9 0.0 1.7 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase DUF2299 PF10061.9 gi|330507520|ref|YP_004383948.1| - 1e-28 99.8 0.1 1.1e-28 99.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) SIMPL PF04402.14 gi|330507521|ref|YP_004383949.1| - 5.2e-45 154.4 6.3 5.9e-45 154.2 6.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) SIMPL PF04402.14 gi|330507522|ref|YP_004383950.1| - 1.1e-26 94.5 3.9 1.3e-26 94.3 3.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) SP2 PF03014.14 gi|330507522|ref|YP_004383950.1| - 0.017 13.6 0.5 0.02 13.3 0.5 1.1 1 0 0 1 1 1 0 Structural protein 2 DUF3783 PF12646.7 gi|330507522|ref|YP_004383950.1| - 0.065 13.2 0.1 2.3 8.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) DeoC PF01791.9 gi|330507523|ref|YP_004383951.1| - 3.6e-59 200.2 0.0 4.2e-59 200.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase TPR_1 PF00515.28 gi|330507524|ref|YP_004383952.1| - 2.7e-41 137.7 13.2 9.4e-11 41.1 0.0 6.7 6 1 0 6 6 6 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330507524|ref|YP_004383952.1| - 1.6e-33 112.0 14.1 1.8e-08 33.9 0.0 6.3 6 1 0 6 6 6 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330507524|ref|YP_004383952.1| - 8.7e-32 108.5 17.0 7.3e-06 25.6 0.8 5.9 2 2 4 6 6 6 5 TPR repeat TPR_8 PF13181.6 gi|330507524|ref|YP_004383952.1| - 1.4e-30 102.9 8.5 2.6e-07 30.3 0.3 5.5 6 0 0 6 6 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330507524|ref|YP_004383952.1| - 4.6e-20 71.7 9.5 3.9e-07 30.3 0.0 4.6 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330507524|ref|YP_004383952.1| - 1.9e-19 68.6 12.0 6.6e-05 23.0 0.0 6.3 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330507524|ref|YP_004383952.1| - 2.2e-19 69.8 17.5 8.3e-07 29.5 0.0 4.4 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330507524|ref|YP_004383952.1| - 2.4e-17 62.1 13.7 5.2e-05 23.7 0.0 5.3 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330507524|ref|YP_004383952.1| - 9.1e-17 61.0 7.9 2.6e-06 27.5 0.1 3.5 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330507524|ref|YP_004383952.1| - 5.8e-13 49.1 14.5 0.00024 21.6 0.1 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330507524|ref|YP_004383952.1| - 6.9e-08 32.6 2.6 0.49 11.1 0.1 5.1 5 0 0 5 5 5 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330507524|ref|YP_004383952.1| - 5.3e-07 29.8 3.9 0.047 13.9 0.0 3.2 2 1 2 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|330507524|ref|YP_004383952.1| - 1.6e-06 27.7 9.2 0.14 12.2 0.0 4.7 3 2 2 5 5 5 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330507524|ref|YP_004383952.1| - 3.3e-06 26.8 12.6 0.98 9.4 0.1 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|330507524|ref|YP_004383952.1| - 2.9e-05 24.0 1.0 0.03 14.4 0.7 3.1 1 1 1 2 2 2 1 Putative TPR-like repeat NARP1 PF12569.8 gi|330507524|ref|YP_004383952.1| - 0.00042 19.4 6.6 0.15 11.0 0.1 2.9 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|330507524|ref|YP_004383952.1| - 0.00064 20.2 4.5 1.5 9.2 0.0 2.9 1 1 3 4 4 4 2 Bacterial transcriptional activator domain MIT PF04212.18 gi|330507524|ref|YP_004383952.1| - 0.0011 19.0 2.6 1.5 8.9 0.1 3.8 3 0 0 3 3 3 1 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|330507524|ref|YP_004383952.1| - 0.0019 18.2 1.7 4.3 7.4 0.4 4.0 1 1 0 2 2 2 1 Domain of Unknown Function (DUF3856) TOM20_plant PF06552.12 gi|330507524|ref|YP_004383952.1| - 0.0065 16.2 0.2 0.12 12.1 0.0 2.8 2 1 1 3 3 3 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_20 PF14561.6 gi|330507524|ref|YP_004383952.1| - 0.0099 16.2 8.5 1.5 9.2 0.2 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat HTH_Bact PF18768.1 gi|330507524|ref|YP_004383952.1| - 0.017 14.7 1.0 27 4.5 0.1 4.7 4 1 1 5 5 5 0 Helix-turn-helix bacterial domain TraI_2B PF18340.1 gi|330507524|ref|YP_004383952.1| - 0.099 12.7 0.1 0.45 10.6 0.0 2.1 2 0 0 2 2 1 0 DNA relaxase TraI 2B/2B-like domain FRD2 PF03197.13 gi|330507524|ref|YP_004383952.1| - 0.13 12.6 0.0 1.3 9.4 0.0 2.3 2 1 1 3 3 3 0 Bacteriophage FRD2 protein Fis1_TPR_C PF14853.6 gi|330507524|ref|YP_004383952.1| - 0.62 10.2 10.1 7.5 6.7 0.1 4.9 4 2 2 6 6 6 0 Fis1 C-terminal tetratricopeptide repeat RDD PF06271.12 gi|330507525|ref|YP_004383953.1| - 6.2e-23 81.6 3.7 7.3e-23 81.3 3.7 1.1 1 0 0 1 1 1 1 RDD family Glycophorin_A PF01102.18 gi|330507525|ref|YP_004383953.1| - 0.0018 18.5 0.3 1.2 9.4 0.0 2.2 2 0 0 2 2 2 2 Glycophorin A Glycos_transf_1 PF00534.20 gi|330507526|ref|YP_004383954.1| - 6.4e-30 103.9 0.0 1.2e-29 103.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330507526|ref|YP_004383954.1| - 8.2e-28 97.5 0.4 1.8e-27 96.4 0.4 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|330507526|ref|YP_004383954.1| - 1.8e-23 83.4 0.0 3.6e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|330507526|ref|YP_004383954.1| - 1e-21 78.1 0.0 1.7e-21 77.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|330507526|ref|YP_004383954.1| - 5e-17 62.4 1.0 6.6e-08 32.5 0.0 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|330507526|ref|YP_004383954.1| - 7.3e-08 32.5 0.0 1.2e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|330507526|ref|YP_004383954.1| - 3.5e-07 30.5 0.0 7.9e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase PF01370.21 gi|330507526|ref|YP_004383954.1| - 0.013 15.0 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF4921 PF16268.5 gi|330507527|ref|YP_004383955.1| - 1.6e-14 53.6 0.0 1.1e-13 50.8 0.0 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4921) GalP_UDP_transf PF01087.22 gi|330507527|ref|YP_004383955.1| - 2.8e-10 40.9 0.0 3.7e-09 37.3 0.0 2.2 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|330507527|ref|YP_004383955.1| - 6e-08 32.6 0.0 9.9e-08 31.9 0.0 1.4 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DUF4931 PF16285.5 gi|330507527|ref|YP_004383955.1| - 1e-07 31.5 1.1 7.3e-07 28.7 0.1 2.4 2 1 1 3 3 3 1 Domain of unknown function (DUF4931) DcpS_C PF11969.8 gi|330507527|ref|YP_004383955.1| - 2.2e-06 28.1 0.1 0.00026 21.4 0.0 2.7 2 1 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.23 gi|330507527|ref|YP_004383955.1| - 0.00076 20.2 0.0 0.046 14.5 0.0 2.2 2 0 0 2 2 2 1 HIT domain Glycos_transf_1 PF00534.20 gi|330507528|ref|YP_004383956.1| - 1.1e-31 109.7 0.0 4e-31 107.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330507528|ref|YP_004383956.1| - 2.9e-24 86.0 0.0 1.1e-23 84.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|330507528|ref|YP_004383956.1| - 4.9e-22 79.1 0.0 8.7e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|330507528|ref|YP_004383956.1| - 2.3e-21 76.6 0.1 3.8e-21 75.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|330507528|ref|YP_004383956.1| - 1.4e-11 44.6 0.0 9.2e-11 41.9 0.0 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|330507528|ref|YP_004383956.1| - 7.1e-07 29.5 0.0 1.4e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|330507528|ref|YP_004383956.1| - 0.00023 21.2 0.0 0.00038 20.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycogen_syn PF05693.13 gi|330507528|ref|YP_004383956.1| - 0.22 10.0 0.0 0.32 9.5 0.0 1.1 1 0 0 1 1 1 0 Glycogen synthase Glycogen_syn PF05693.13 gi|330507529|ref|YP_004383957.1| - 1.7e-17 63.3 0.0 1.3e-07 30.6 0.0 2.9 2 1 0 2 2 2 2 Glycogen synthase Glyco_transf_4 PF13439.6 gi|330507529|ref|YP_004383957.1| - 6.9e-07 29.4 0.0 1.3e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|330507529|ref|YP_004383957.1| - 0.00062 19.4 0.0 0.0042 16.6 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330507529|ref|YP_004383957.1| - 0.034 14.6 0.0 0.2 12.1 0.0 2.3 3 0 0 3 3 3 0 Glycosyl transferases group 1 ATPase PF06745.13 gi|330507530|ref|YP_004383958.1| - 9.9e-46 155.9 0.2 1.2e-45 155.7 0.2 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|330507530|ref|YP_004383958.1| - 2.5e-06 26.4 0.0 3.5e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|330507530|ref|YP_004383958.1| - 9.9e-05 22.0 0.0 0.00024 20.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|330507530|ref|YP_004383958.1| - 0.00077 18.9 0.0 0.0013 18.1 0.0 1.6 2 1 0 2 2 2 1 DnaB-like helicase C terminal domain MEDS PF14417.6 gi|330507530|ref|YP_004383958.1| - 0.0013 18.6 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Rad51 PF08423.11 gi|330507530|ref|YP_004383958.1| - 0.012 14.8 0.9 0.022 14.1 0.9 1.4 1 0 0 1 1 1 0 Rad51 AAA_24 PF13479.6 gi|330507530|ref|YP_004383958.1| - 0.028 14.1 0.3 0.063 13.0 0.3 1.6 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|330507530|ref|YP_004383958.1| - 0.03 14.0 0.2 0.052 13.3 0.2 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.6 gi|330507530|ref|YP_004383958.1| - 0.064 13.5 0.1 0.75 10.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain DAP3 PF10236.9 gi|330507530|ref|YP_004383958.1| - 0.066 12.4 0.1 0.1 11.7 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_19 PF13245.6 gi|330507530|ref|YP_004383958.1| - 0.089 13.1 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|330507530|ref|YP_004383958.1| - 0.094 13.1 1.0 0.67 10.3 1.0 2.1 1 1 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.9 gi|330507530|ref|YP_004383958.1| - 0.11 11.7 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|330507530|ref|YP_004383958.1| - 0.11 11.9 0.5 1.1 8.7 0.1 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_14 PF13173.6 gi|330507530|ref|YP_004383958.1| - 0.14 12.2 0.2 0.51 10.4 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|330507531|ref|YP_004383959.1| - 9.4e-14 52.0 0.0 2.8e-13 50.4 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|330507531|ref|YP_004383959.1| - 1.1e-05 25.8 0.0 0.091 13.0 0.0 2.8 2 1 1 3 3 2 2 AAA domain AAA_16 PF13191.6 gi|330507531|ref|YP_004383959.1| - 8.8e-05 23.0 0.8 0.0078 16.6 0.0 3.4 3 1 1 4 4 4 1 AAA ATPase domain Rad17 PF03215.15 gi|330507531|ref|YP_004383959.1| - 0.00051 20.0 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_assoc_2 PF16193.5 gi|330507531|ref|YP_004383959.1| - 0.0027 18.0 0.2 0.011 16.1 0.1 2.1 2 0 0 2 2 2 1 AAA C-terminal domain AAA_30 PF13604.6 gi|330507531|ref|YP_004383959.1| - 0.0028 17.4 0.2 0.0097 15.6 0.1 1.9 2 0 0 2 2 1 1 AAA domain PhoH PF02562.16 gi|330507531|ref|YP_004383959.1| - 0.0031 17.0 0.6 0.33 10.4 0.5 2.4 1 1 1 2 2 2 1 PhoH-like protein AAA_25 PF13481.6 gi|330507531|ref|YP_004383959.1| - 0.0037 16.9 0.1 0.061 12.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|330507531|ref|YP_004383959.1| - 0.0047 16.9 0.0 0.016 15.2 0.0 2.0 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|330507531|ref|YP_004383959.1| - 0.0058 16.4 0.0 0.016 15.0 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|330507531|ref|YP_004383959.1| - 0.0075 16.6 0.2 3.4 8.0 0.0 2.8 3 1 0 3 3 2 1 AAA domain AAA_14 PF13173.6 gi|330507531|ref|YP_004383959.1| - 0.017 15.2 0.0 0.031 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|330507531|ref|YP_004383959.1| - 0.018 14.8 0.0 0.051 13.3 0.0 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_6 PF12774.7 gi|330507531|ref|YP_004383959.1| - 0.047 12.7 0.0 0.12 11.3 0.0 1.5 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region DEAD PF00270.29 gi|330507531|ref|YP_004383959.1| - 0.064 13.0 0.0 5.8 6.7 0.0 2.5 2 0 0 2 2 2 0 DEAD/DEAH box helicase Cytidylate_kin PF02224.18 gi|330507531|ref|YP_004383959.1| - 0.072 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase AAA_28 PF13521.6 gi|330507531|ref|YP_004383959.1| - 0.099 12.9 0.1 1.1 9.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|330507531|ref|YP_004383959.1| - 0.12 11.6 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_7 PF12775.7 gi|330507531|ref|YP_004383959.1| - 0.21 11.1 0.0 0.39 10.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Pyridox_ox_2 PF12900.7 gi|330507532|ref|YP_004383960.1| - 6.4e-24 84.5 0.0 7.4e-24 84.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|330507532|ref|YP_004383960.1| - 1.7e-11 44.1 0.0 2.3e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|330507532|ref|YP_004383960.1| - 0.00059 19.4 0.0 0.0008 19.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like CPSase_L_D2 PF02786.17 gi|330507533|ref|YP_004383961.1| - 3.4e-75 252.1 0.0 5.1e-75 251.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|330507533|ref|YP_004383961.1| - 3.9e-46 156.1 0.2 1.1e-45 154.7 0.0 1.9 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|330507533|ref|YP_004383961.1| - 2e-41 140.5 0.0 5.5e-41 139.0 0.0 1.8 2 0 0 2 2 2 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|330507533|ref|YP_004383961.1| - 5.7e-11 42.3 0.0 1.3e-10 41.2 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|330507533|ref|YP_004383961.1| - 6.8e-06 26.2 0.0 1.3e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|330507533|ref|YP_004383961.1| - 0.00041 20.0 0.0 0.00077 19.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|330507533|ref|YP_004383961.1| - 0.032 14.0 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon BPL_LplA_LipB PF03099.19 gi|330507534|ref|YP_004383962.1| - 3e-18 66.0 0.0 4e-18 65.6 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_LplA_LipB_2 PF16917.5 gi|330507534|ref|YP_004383962.1| - 5.2e-09 35.9 0.0 1e-08 34.9 0.0 1.5 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|330507534|ref|YP_004383962.1| - 3.8e-08 33.1 0.1 6.7e-08 32.3 0.1 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain Prok-JAB PF14464.6 gi|330507535|ref|YP_004383963.1| - 5.5e-09 35.8 0.0 7.6e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|330507535|ref|YP_004383963.1| - 0.038 13.9 0.0 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 RadC-like JAB domain CTP_transf_like PF01467.26 gi|330507536|ref|YP_004383964.1| - 8.8e-18 64.9 0.0 1.1e-17 64.6 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|330507536|ref|YP_004383964.1| - 0.14 12.0 0.1 0.63 9.9 0.1 2.3 2 1 0 2 2 2 0 FAD synthetase CTP_transf_like PF01467.26 gi|330507537|ref|YP_004383965.1| - 1.3e-14 54.6 0.0 1.5e-14 54.4 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|330507537|ref|YP_004383965.1| - 0.0025 17.7 0.0 0.005 16.7 0.0 1.5 2 0 0 2 2 2 1 FAD synthetase CAP PF00188.26 gi|330507537|ref|YP_004383965.1| - 0.11 13.3 0.0 0.17 12.7 0.0 1.3 1 0 0 1 1 1 0 Cysteine-rich secretory protein family ATP-sulfurylase PF01747.17 gi|330507537|ref|YP_004383965.1| - 0.15 11.5 0.0 1.8 8.0 0.0 2.1 1 1 1 2 2 2 0 ATP-sulfurylase Pyr_redox_2 PF07992.14 gi|330507538|ref|YP_004383966.1| - 3.9e-45 154.3 0.0 5e-45 154.0 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330507538|ref|YP_004383966.1| - 3.1e-19 69.3 0.4 2.4e-14 53.6 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|330507538|ref|YP_004383966.1| - 1.3e-07 31.2 0.0 0.00056 19.3 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 gi|330507538|ref|YP_004383966.1| - 0.00035 21.1 0.0 0.052 14.0 0.0 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|330507538|ref|YP_004383966.1| - 0.0019 18.1 0.0 1.3 8.9 0.0 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|330507538|ref|YP_004383966.1| - 0.0075 16.5 0.1 0.74 10.1 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|330507538|ref|YP_004383966.1| - 0.044 12.9 2.6 0.59 9.2 0.0 2.4 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|330507538|ref|YP_004383966.1| - 0.14 11.2 2.0 7.9 5.4 0.0 2.5 2 1 0 2 2 2 0 Glucose inhibited division protein A TrkA_N PF02254.18 gi|330507538|ref|YP_004383966.1| - 0.15 12.3 0.2 1.4 9.2 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain HTH_7 PF02796.15 gi|330507539|ref|YP_004383967.1| - 0.039 14.0 0.0 0.071 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Crp_2 PF13545.6 gi|330507539|ref|YP_004383967.1| - 0.051 13.6 0.0 0.079 12.9 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TetR_N PF00440.23 gi|330507539|ref|YP_004383967.1| - 0.15 11.9 0.0 0.32 10.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family MarR_2 PF12802.7 gi|330507539|ref|YP_004383967.1| - 0.17 11.8 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 MarR family RVT_3 PF13456.6 gi|330507541|ref|YP_004383969.1| - 3.2e-14 52.8 0.0 3.6e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|330507541|ref|YP_004383969.1| - 9e-09 35.7 0.0 1.2e-08 35.2 0.0 1.2 1 0 0 1 1 1 1 RNase H YhcG_C PF06250.11 gi|330507542|ref|YP_004383970.1| - 4.4e-51 172.8 0.0 8.2e-51 171.9 0.0 1.4 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DUF1016_N PF17761.1 gi|330507542|ref|YP_004383970.1| - 1.8e-42 144.7 0.4 2.6e-42 144.2 0.4 1.2 1 0 0 1 1 1 1 DUF1016 N-terminal domain THDPS_N_2 PF14805.6 gi|330507542|ref|YP_004383970.1| - 0.023 14.9 0.5 1.5 9.1 0.0 2.6 2 0 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal ALAD PF00490.21 gi|330507544|ref|YP_004383972.1| - 8.9e-141 468.6 0.0 1e-140 468.5 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Shikimate_DH PF01488.20 gi|330507545|ref|YP_004383973.1| - 3.3e-39 134.1 0.1 3.3e-39 134.1 0.1 2.1 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|330507545|ref|YP_004383973.1| - 2.7e-32 111.5 0.9 4.3e-32 110.9 0.1 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|330507545|ref|YP_004383973.1| - 4.9e-20 71.8 4.0 9.6e-20 70.8 4.0 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|330507545|ref|YP_004383973.1| - 0.0004 20.9 0.1 0.0021 18.6 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Glu_dehyd_C PF16912.5 gi|330507545|ref|YP_004383973.1| - 0.014 14.9 0.1 0.034 13.6 0.1 1.7 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus THF_DHG_CYH_C PF02882.19 gi|330507545|ref|YP_004383973.1| - 0.022 14.1 0.1 0.11 11.8 0.0 2.2 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|330507545|ref|YP_004383973.1| - 0.057 12.8 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LVIVD PF08309.11 gi|330507545|ref|YP_004383973.1| - 0.08 12.3 0.1 0.18 11.2 0.1 1.5 1 0 0 1 1 1 0 LVIVD repeat NAD_binding_7 PF13241.6 gi|330507545|ref|YP_004383973.1| - 0.1 13.1 0.1 0.44 11.0 0.0 2.2 2 1 0 2 2 2 0 Putative NAD(P)-binding ThiF PF00899.21 gi|330507545|ref|YP_004383973.1| - 0.14 11.5 0.2 0.27 10.5 0.2 1.4 1 0 0 1 1 1 0 ThiF family HAUS6_N PF14661.6 gi|330507545|ref|YP_004383973.1| - 0.2 11.2 3.1 0.42 10.2 3.1 1.5 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus NAD_binding_7 PF13241.6 gi|330507546|ref|YP_004383974.1| - 2.3e-15 56.9 0.0 3.6e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding AsnC_trans_reg2 PF17805.1 gi|330507547|ref|YP_004383975.1| - 2.1e-30 104.7 0.0 1.2e-29 102.3 0.0 1.9 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|330507547|ref|YP_004383975.1| - 0.0027 17.5 1.3 0.005 16.7 0.2 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain NosD PF05048.13 gi|330507548|ref|YP_004383976.1| - 5.7e-61 205.8 48.3 1.3e-25 90.1 20.2 4.6 2 2 2 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|330507548|ref|YP_004383976.1| - 1.1e-57 194.4 90.6 2.8e-15 56.5 9.4 5.1 2 2 4 6 6 6 6 Right handed beta helix region Response_reg PF00072.24 gi|330507549|ref|YP_004383977.1| - 9e-20 70.9 0.0 2e-19 69.8 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|330507549|ref|YP_004383977.1| - 1.9e-08 34.5 0.0 8.8e-08 32.3 0.0 2.2 3 0 0 3 3 3 1 PAS domain PAS_4 PF08448.10 gi|330507549|ref|YP_004383977.1| - 3.2e-08 33.8 0.0 8.8e-08 32.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|330507549|ref|YP_004383977.1| - 3.6e-07 30.4 0.0 7.5e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|330507549|ref|YP_004383977.1| - 1.7e-05 24.8 0.0 4.5e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|330507549|ref|YP_004383977.1| - 0.0011 19.0 0.0 0.0055 16.7 0.0 2.2 2 0 0 2 2 2 1 PAS domain Chorismate_synt PF01264.21 gi|330507550|ref|YP_004383978.1| - 1e-144 481.3 0.2 1.2e-144 481.1 0.2 1.0 1 0 0 1 1 1 1 Chorismate synthase MoeA_N PF03453.17 gi|330507551|ref|YP_004383979.1| - 7e-38 129.9 0.5 1.1e-37 129.3 0.5 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|330507551|ref|YP_004383979.1| - 6.8e-26 90.7 0.0 1.4e-25 89.6 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|330507551|ref|YP_004383979.1| - 1.3e-13 50.5 0.0 3.1e-12 46.0 0.0 2.3 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.15 gi|330507551|ref|YP_004383979.1| - 2.5e-10 40.4 0.0 8.5e-10 38.7 0.1 2.0 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) LysR_substrate PF03466.20 gi|330507551|ref|YP_004383979.1| - 0.0017 17.7 0.0 0.85 8.9 0.0 2.4 1 1 1 2 2 2 2 LysR substrate binding domain T2SSE PF00437.20 gi|330507551|ref|YP_004383979.1| - 0.034 13.2 0.0 0.058 12.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DNA_primase_lrg PF04104.14 gi|330507552|ref|YP_004383980.1| - 3.1e-32 112.0 0.0 1.2e-31 110.1 0.0 1.7 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_C PF02747.15 gi|330507553|ref|YP_004383981.1| - 2.3e-16 60.2 0.0 1.6e-12 47.7 0.0 3.6 2 2 1 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|330507553|ref|YP_004383981.1| - 1.6e-15 57.0 0.5 3.5e-15 55.8 0.3 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.13 gi|330507553|ref|YP_004383981.1| - 0.00016 21.3 0.0 0.00068 19.2 0.0 1.8 2 0 0 2 2 2 1 Rad9 DNA_pol3_beta PF00712.19 gi|330507553|ref|YP_004383981.1| - 0.068 13.3 0.1 0.36 10.9 0.2 2.2 2 1 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain DNA_pol3_beta_3 PF02768.15 gi|330507553|ref|YP_004383981.1| - 0.12 12.3 0.7 0.75 9.6 0.7 2.2 1 1 0 1 1 1 0 DNA polymerase III beta subunit, C-terminal domain TFIIS_C PF01096.18 gi|330507554|ref|YP_004383982.1| - 2.6e-18 65.6 12.0 2.8e-17 62.3 3.3 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.6 gi|330507554|ref|YP_004383982.1| - 4e-08 32.4 11.6 1e-06 27.9 0.7 2.8 3 0 0 3 3 3 2 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|330507554|ref|YP_004383982.1| - 1.3e-07 31.4 17.4 1.6e-07 31.1 4.2 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|330507554|ref|YP_004383982.1| - 0.00025 21.0 10.8 0.011 15.7 11.0 2.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|330507554|ref|YP_004383982.1| - 0.00043 19.9 13.0 0.3 10.9 0.1 4.1 4 0 0 4 4 4 2 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|330507554|ref|YP_004383982.1| - 0.00044 20.1 6.7 0.32 10.9 0.2 3.6 3 1 0 3 3 3 1 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|330507554|ref|YP_004383982.1| - 0.00079 19.3 8.6 0.14 12.1 1.4 2.3 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|330507554|ref|YP_004383982.1| - 0.001 19.0 1.0 0.001 19.0 1.0 3.1 2 1 1 3 3 3 1 Transposase zinc-ribbon domain IBR PF01485.21 gi|330507554|ref|YP_004383982.1| - 0.0016 18.6 9.1 0.052 13.8 2.2 2.7 2 1 0 2 2 2 2 IBR domain, a half RING-finger domain TF_Zn_Ribbon PF08271.12 gi|330507554|ref|YP_004383982.1| - 0.0022 17.5 12.7 0.0068 15.9 0.6 3.3 2 1 1 3 3 3 1 TFIIB zinc-binding zf_UBZ PF18439.1 gi|330507554|ref|YP_004383982.1| - 0.0027 17.3 8.3 5.7 6.6 0.0 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-ACC PF17848.1 gi|330507554|ref|YP_004383982.1| - 0.0036 17.3 13.7 0.6 10.2 3.4 4.0 3 1 0 3 3 3 1 Acetyl-coA carboxylase zinc finger domain PhnA_Zn_Ribbon PF08274.12 gi|330507554|ref|YP_004383982.1| - 0.0041 17.0 7.6 3 7.9 0.1 3.5 2 2 0 2 2 2 2 PhnA Zinc-Ribbon DNA_RNApol_7kD PF03604.13 gi|330507554|ref|YP_004383982.1| - 0.0053 16.4 7.5 0.65 9.7 1.0 3.3 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|330507554|ref|YP_004383982.1| - 0.0057 16.5 17.0 0.39 10.7 0.7 4.1 3 1 0 3 3 3 1 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|330507554|ref|YP_004383982.1| - 0.0069 16.3 9.3 0.071 13.1 1.3 2.8 2 1 0 2 2 2 1 zinc-ribbons TackOD1 PF18551.1 gi|330507554|ref|YP_004383982.1| - 0.01 15.5 0.5 0.01 15.5 0.5 2.7 2 1 0 2 2 2 0 Thaumarchaeal output domain 1 zinc_ribbon_15 PF17032.5 gi|330507554|ref|YP_004383982.1| - 0.011 16.4 7.8 0.015 16.0 0.1 2.9 2 1 1 3 3 3 0 zinc-ribbon family Prok-RING_1 PF14446.6 gi|330507554|ref|YP_004383982.1| - 0.043 13.8 1.0 0.043 13.8 1.0 2.8 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-RRN7 PF11781.8 gi|330507554|ref|YP_004383982.1| - 0.046 13.4 15.0 0.26 11.0 2.4 4.0 3 1 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Ogr_Delta PF04606.12 gi|330507554|ref|YP_004383982.1| - 0.064 13.3 11.2 0.08 12.9 0.7 3.3 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger Zn-ribbon_8 PF09723.10 gi|330507554|ref|YP_004383982.1| - 0.067 13.3 14.7 0.77 9.9 0.1 4.1 3 1 0 3 3 3 0 Zinc ribbon domain zf-BED PF02892.15 gi|330507554|ref|YP_004383982.1| - 0.075 13.1 2.5 0.88 9.6 0.2 2.9 3 0 0 3 3 3 0 BED zinc finger HypA PF01155.19 gi|330507554|ref|YP_004383982.1| - 0.093 12.8 8.6 0.15 12.0 2.7 2.8 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4428 PF14471.6 gi|330507554|ref|YP_004383982.1| - 0.1 12.5 0.4 0.1 12.5 0.4 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4428) zf-IS66 PF13005.7 gi|330507554|ref|YP_004383982.1| - 0.11 12.9 6.8 6.4 7.3 0.0 3.7 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF3797 PF12677.7 gi|330507554|ref|YP_004383982.1| - 0.13 12.1 6.0 0.35 10.8 0.0 3.3 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) DUF3268 PF11672.8 gi|330507554|ref|YP_004383982.1| - 0.14 12.5 3.8 0.35 11.2 0.3 2.3 2 1 1 3 3 2 0 zinc-finger-containing domain UPF0547 PF10571.9 gi|330507554|ref|YP_004383982.1| - 0.2 11.8 12.2 1.4 9.0 0.1 3.6 4 0 0 4 4 3 0 Uncharacterised protein family UPF0547 zf-RING_7 PF02591.15 gi|330507554|ref|YP_004383982.1| - 0.26 11.5 9.5 2.5 8.3 0.5 3.8 4 1 0 4 4 4 0 C4-type zinc ribbon domain PHD PF00628.29 gi|330507554|ref|YP_004383982.1| - 0.33 10.9 7.6 1.1 9.2 1.1 3.0 3 0 0 3 3 3 0 PHD-finger Rubredoxin_2 PF18073.1 gi|330507554|ref|YP_004383982.1| - 0.38 10.5 15.7 8.7 6.2 0.1 4.2 4 0 0 4 4 4 0 Rubredoxin metal binding domain FYVE PF01363.21 gi|330507554|ref|YP_004383982.1| - 0.5 10.5 7.5 4.1 7.6 7.5 2.3 1 1 0 1 1 1 0 FYVE zinc finger zf-NADH-PPase PF09297.11 gi|330507554|ref|YP_004383982.1| - 0.76 9.5 13.6 0.14 11.8 2.5 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-3CxxC_2 PF17180.4 gi|330507554|ref|YP_004383982.1| - 0.92 10.3 12.9 10 7.0 2.2 3.7 2 2 1 3 3 3 0 Zinc-binding domain DUF35_N PF12172.8 gi|330507554|ref|YP_004383982.1| - 1.2 9.1 9.7 11 6.0 0.2 3.9 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) NOB1_Zn_bind PF08772.11 gi|330507554|ref|YP_004383982.1| - 1.2 9.3 9.8 30 4.8 0.0 3.6 3 1 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-C4_Topoisom PF01396.19 gi|330507554|ref|YP_004383982.1| - 1.2 9.0 13.4 3.1 7.6 0.0 3.6 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger RPA_interact_C PF14768.6 gi|330507554|ref|YP_004383982.1| - 1.4 9.6 8.9 20 5.9 8.9 2.5 1 1 0 1 1 1 0 Replication protein A interacting C-terminal zf-LITAF-like PF10601.9 gi|330507554|ref|YP_004383982.1| - 2.2 8.6 9.7 5.9 7.2 0.0 3.7 3 1 1 4 4 4 0 LITAF-like zinc ribbon domain zf-ISL3 PF14690.6 gi|330507554|ref|YP_004383982.1| - 4.4 8.0 16.6 6.8 7.5 1.7 3.9 2 2 2 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L32p PF01783.23 gi|330507554|ref|YP_004383982.1| - 4.6 7.6 9.5 3.3 8.0 2.1 2.8 3 1 0 3 3 2 0 Ribosomal L32p protein family Zn_ribbon_recom PF13408.6 gi|330507554|ref|YP_004383982.1| - 5.3 7.6 15.1 3.8 8.1 1.0 3.3 2 2 1 3 3 3 0 Recombinase zinc beta ribbon domain Rep_fac-A_C PF08646.10 gi|330507554|ref|YP_004383982.1| - 6.7 6.5 10.7 0.83 9.4 1.0 2.5 2 1 1 3 3 3 0 Replication factor-A C terminal domain DUF2318 PF10080.9 gi|330507554|ref|YP_004383982.1| - 8 6.6 7.8 1.3 9.1 1.3 2.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) DUF5612 PF18462.1 gi|330507555|ref|YP_004383983.1| - 8.7e-70 233.1 5.7 8.7e-70 233.1 5.7 2.0 2 1 1 3 3 3 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|330507555|ref|YP_004383983.1| - 6.7e-09 35.4 0.4 2.2e-08 33.7 0.1 2.1 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|330507555|ref|YP_004383983.1| - 0.00014 22.3 0.0 0.00049 20.6 0.0 2.0 1 1 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|330507555|ref|YP_004383983.1| - 0.0023 17.9 0.0 0.0047 16.9 0.0 1.6 1 0 0 1 1 1 1 ACT domain Peripla_BP_1 PF00532.21 gi|330507555|ref|YP_004383983.1| - 0.058 12.8 0.2 0.78 9.1 0.0 2.2 1 1 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family Glutaredoxin PF00462.24 gi|330507556|ref|YP_004383984.1| - 6.8e-05 23.0 0.0 0.0001 22.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.14 gi|330507556|ref|YP_004383984.1| - 0.0032 17.8 0.0 0.0037 17.6 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) CBFD_NFYB_HMF PF00808.23 gi|330507558|ref|YP_004383986.1| - 2.2e-16 59.9 0.0 2.5e-16 59.7 0.0 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|330507558|ref|YP_004383986.1| - 1.2e-10 41.9 0.0 1.3e-10 41.7 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.13 gi|330507558|ref|YP_004383986.1| - 4.2e-09 36.3 0.0 5e-09 36.0 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-T_C PF15511.6 gi|330507558|ref|YP_004383986.1| - 3e-07 30.5 0.0 3.5e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TAF PF02969.17 gi|330507558|ref|YP_004383986.1| - 2.3e-05 24.5 0.1 2.5e-05 24.4 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.15 gi|330507558|ref|YP_004383986.1| - 5.4e-05 23.2 0.0 6.6e-05 23.0 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-S PF15630.6 gi|330507558|ref|YP_004383986.1| - 0.00051 20.4 0.0 0.00056 20.2 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein AAA_32 PF13654.6 gi|330507558|ref|YP_004383986.1| - 0.024 13.5 0.3 0.025 13.4 0.3 1.2 1 0 0 1 1 1 0 AAA domain GatB_N PF02934.15 gi|330507559|ref|YP_004383987.1| - 8.5e-65 218.8 0.0 1.4e-64 218.2 0.0 1.3 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|330507559|ref|YP_004383987.1| - 4.6e-21 75.3 0.2 9.1e-21 74.3 0.2 1.5 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|330507559|ref|YP_004383987.1| - 7.2e-11 42.2 0.2 2.8e-10 40.3 0.0 2.1 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|330507559|ref|YP_004383987.1| - 0.0035 17.4 1.2 0.0071 16.4 1.2 1.4 1 0 0 1 1 1 1 Yqey-like protein AAA_16 PF13191.6 gi|330507560|ref|YP_004383988.1| - 2.6e-11 44.2 0.1 1.6e-09 38.4 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|330507560|ref|YP_004383988.1| - 8.3e-08 32.6 0.0 2e-07 31.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|330507560|ref|YP_004383988.1| - 8.4e-05 23.0 0.0 0.00019 21.9 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|330507560|ref|YP_004383988.1| - 0.00024 20.6 0.0 0.0063 16.0 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region Cdc6_C PF09079.11 gi|330507560|ref|YP_004383988.1| - 0.00042 20.2 0.1 0.0013 18.7 0.1 1.9 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_11 PF13086.6 gi|330507560|ref|YP_004383988.1| - 0.0017 18.2 0.0 0.0034 17.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|330507560|ref|YP_004383988.1| - 0.0059 16.5 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_30 PF13604.6 gi|330507560|ref|YP_004383988.1| - 0.025 14.3 0.0 0.053 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|330507560|ref|YP_004383988.1| - 0.041 12.9 0.0 0.069 12.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF815 PF05673.13 gi|330507560|ref|YP_004383988.1| - 0.053 12.7 0.0 0.12 11.5 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF815) TrwB_AAD_bind PF10412.9 gi|330507560|ref|YP_004383988.1| - 0.057 12.3 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SRP54 PF00448.22 gi|330507560|ref|YP_004383988.1| - 0.066 12.8 0.0 0.12 12.0 0.0 1.4 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|330507560|ref|YP_004383988.1| - 0.068 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|330507560|ref|YP_004383988.1| - 0.1 11.9 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RuvB_N PF05496.12 gi|330507560|ref|YP_004383988.1| - 0.12 12.2 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|330507560|ref|YP_004383988.1| - 0.12 12.7 0.0 0.28 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_35 PF14516.6 gi|330507560|ref|YP_004383988.1| - 0.14 11.0 0.0 0.35 9.6 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain NTPase_1 PF03266.15 gi|330507560|ref|YP_004383988.1| - 0.14 12.0 0.0 0.36 10.7 0.0 1.6 1 0 0 1 1 1 0 NTPase BPD_transp_1 PF00528.22 gi|330507561|ref|YP_004383989.1| - 1.1e-26 93.7 10.2 1.1e-26 93.7 10.2 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|330507562|ref|YP_004383990.1| - 4.4e-22 78.7 12.7 4.4e-22 78.7 12.7 3.0 3 2 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component HTH_45 PF14947.6 gi|330507564|ref|YP_004383992.1| - 1.1e-09 38.1 0.1 1.7e-09 37.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|330507564|ref|YP_004383992.1| - 0.0022 18.1 0.1 0.0026 17.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain P53_tetramer PF07710.11 gi|330507564|ref|YP_004383992.1| - 0.012 14.9 0.0 0.022 14.1 0.0 1.4 1 0 0 1 1 1 0 P53 tetramerisation motif Rrf2 PF02082.20 gi|330507564|ref|YP_004383992.1| - 0.057 13.8 0.0 0.074 13.4 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 gi|330507564|ref|YP_004383992.1| - 0.18 12.3 0.0 0.23 12.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Glyco_tranf_2_3 PF13641.6 gi|330507565|ref|YP_004383993.1| - 1.1e-21 77.8 0.0 1.5e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|330507565|ref|YP_004383993.1| - 3.2e-19 69.4 0.1 4.6e-19 68.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|330507565|ref|YP_004383993.1| - 3.7e-16 59.6 2.8 7.4e-16 58.6 2.8 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|330507565|ref|YP_004383993.1| - 5.4e-14 52.0 0.5 1.2e-13 50.9 0.3 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|330507565|ref|YP_004383993.1| - 5.1e-06 25.4 10.7 9.6e-06 24.5 0.0 2.1 1 1 1 2 2 2 1 Chitin synthase Glyco_tranf_2_4 PF13704.6 gi|330507565|ref|YP_004383993.1| - 0.00048 20.6 0.5 0.0012 19.4 0.5 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 CodY PF06018.14 gi|330507565|ref|YP_004383993.1| - 0.066 12.7 0.1 0.13 11.7 0.1 1.6 1 0 0 1 1 1 0 CodY GAF-like domain DUF150_C PF17384.2 gi|330507566|ref|YP_004383994.1| - 0.064 13.4 0.0 0.077 13.1 0.0 1.2 1 0 0 1 1 1 0 RimP C-terminal SH3 domain Rhodanese PF00581.20 gi|330507567|ref|YP_004383995.1| - 7.1e-23 81.2 0.0 3.8e-10 40.3 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain Uteroglobin PF01099.17 gi|330507567|ref|YP_004383995.1| - 0.0089 16.3 0.7 0.017 15.4 0.7 1.4 1 0 0 1 1 1 1 Uteroglobin family EAV_GP5 PF15981.5 gi|330507567|ref|YP_004383995.1| - 0.11 12.9 0.6 0.29 11.5 0.6 1.7 1 0 0 1 1 1 0 Envelope glycoprotein GP 5 of equine arteritis virus DUF3895 PF13034.6 gi|330507567|ref|YP_004383995.1| - 0.17 11.9 0.0 0.49 10.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3895) Carb_kinase PF01256.17 gi|330507568|ref|YP_004383996.1| - 3.1e-47 161.1 0.8 1.5e-46 158.9 0.8 2.2 3 1 0 3 3 3 1 Carbohydrate kinase YjeF_N PF03853.15 gi|330507568|ref|YP_004383996.1| - 5.7e-42 143.5 0.2 1.2e-40 139.2 0.0 2.2 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|330507568|ref|YP_004383996.1| - 0.00012 21.5 0.0 0.00019 20.9 0.0 1.2 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MoaC PF01967.21 gi|330507569|ref|YP_004383997.1| - 1.2e-47 161.4 0.3 1.4e-47 161.2 0.3 1.0 1 0 0 1 1 1 1 MoaC family SOUL PF04832.12 gi|330507570|ref|YP_004383998.1| - 6.3e-26 91.5 0.1 7.1e-26 91.4 0.1 1.0 1 0 0 1 1 1 1 SOUL heme-binding protein GyrI-like PF06445.15 gi|330507570|ref|YP_004383998.1| - 0.01 16.1 0.0 0.014 15.7 0.0 1.2 1 0 0 1 1 1 0 GyrI-like small molecule binding domain Fic PF02661.18 gi|330507572|ref|YP_004384000.1| - 5.3e-07 30.4 0.2 0.00012 22.9 0.3 2.4 2 1 0 2 2 2 1 Fic/DOC family DUF104 PF01954.16 gi|330507574|ref|YP_004384002.1| - 0.034 14.6 1.1 0.053 14.0 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF104 MazE_antitoxin PF04014.18 gi|330507574|ref|YP_004384002.1| - 0.043 13.8 0.0 0.09 12.7 0.0 1.6 1 1 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin PIN PF01850.21 gi|330507575|ref|YP_004384003.1| - 5.8e-15 55.9 2.0 2.4e-14 53.9 2.0 1.8 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|330507575|ref|YP_004384003.1| - 3.5e-05 24.4 0.2 7.3e-05 23.3 0.2 1.6 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|330507575|ref|YP_004384003.1| - 0.15 12.9 0.0 0.16 12.8 0.0 1.2 1 0 0 1 1 1 0 PIN domain CTP_synth_N PF06418.14 gi|330507577|ref|YP_004384005.1| - 2.7e-123 410.5 0.7 3.7e-123 410.0 0.7 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|330507577|ref|YP_004384005.1| - 1.3e-56 191.4 0.0 2.7e-56 190.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|330507577|ref|YP_004384005.1| - 3.7e-07 30.1 0.0 3.3e-05 23.7 0.0 2.8 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|330507577|ref|YP_004384005.1| - 0.00023 21.2 0.0 0.0006 19.9 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|330507577|ref|YP_004384005.1| - 0.05 12.8 0.0 0.58 9.3 0.0 2.4 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_31 PF13614.6 gi|330507577|ref|YP_004384005.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Trm112p PF03966.16 gi|330507579|ref|YP_004384007.1| - 6.2e-12 45.9 2.2 1.1e-11 45.1 2.2 1.4 1 1 0 1 1 1 1 Trm112p-like protein Elf1 PF05129.13 gi|330507579|ref|YP_004384007.1| - 0.064 13.3 0.1 0.066 13.3 0.1 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Prim_Zn_Ribbon PF08273.12 gi|330507579|ref|YP_004384007.1| - 0.07 13.4 0.7 0.13 12.5 0.7 1.5 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Amidohydro_2 PF04909.14 gi|330507580|ref|YP_004384008.1| - 1.8e-26 93.6 0.1 3.1e-26 92.8 0.1 1.3 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|330507580|ref|YP_004384008.1| - 0.17 11.2 0.0 3.4 7.0 0.0 2.1 2 0 0 2 2 2 0 TatD related DNase TP6A_N PF04406.14 gi|330507581|ref|YP_004384009.1| - 8e-16 57.8 0.1 1.6e-15 56.8 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.11 gi|330507582|ref|YP_004384010.1| - 3.6e-63 212.1 0.0 5.9e-63 211.4 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|330507582|ref|YP_004384010.1| - 5.2e-37 126.5 0.0 1.3e-36 125.2 0.0 1.7 2 0 0 2 2 2 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|330507582|ref|YP_004384010.1| - 2.4e-11 44.1 0.0 7.8e-11 42.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|330507582|ref|YP_004384010.1| - 7.2e-07 29.1 0.0 1.5e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|330507582|ref|YP_004384010.1| - 0.0019 17.0 0.5 0.0035 16.2 0.0 1.6 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_2 PF13581.6 gi|330507582|ref|YP_004384010.1| - 0.03 14.3 0.0 0.093 12.7 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain MAF_flag10 PF01973.18 gi|330507582|ref|YP_004384010.1| - 0.17 11.6 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF115 AsnC_trans_reg PF01037.21 gi|330507583|ref|YP_004384011.1| - 3.4e-11 42.9 0.3 4e-11 42.7 0.3 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|330507583|ref|YP_004384011.1| - 0.0003 20.8 1.2 0.00035 20.6 1.2 1.1 1 0 0 1 1 1 1 NapD protein GYD PF08734.11 gi|330507583|ref|YP_004384011.1| - 0.00098 19.0 0.1 0.0011 18.9 0.1 1.2 1 0 0 1 1 1 1 GYD domain ACT_4 PF13291.6 gi|330507583|ref|YP_004384011.1| - 0.013 16.1 0.8 0.5 11.0 0.4 2.1 1 1 1 2 2 2 0 ACT domain DNA_pol_phi PF04931.13 gi|330507584|ref|YP_004384012.1| - 0.014 13.5 1.8 0.017 13.2 1.8 1.1 1 0 0 1 1 1 0 DNA polymerase phi tRNA_anti-codon PF01336.25 gi|330507585|ref|YP_004384013.1| - 0.019 15.0 0.0 1.4 8.9 0.0 2.6 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain RMI1_C PF16099.5 gi|330507585|ref|YP_004384013.1| - 0.064 13.1 0.1 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 Recq-mediated genome instability protein 1, C-terminal OB-fold Nop PF01798.18 gi|330507586|ref|YP_004384014.1| - 4.2e-41 140.9 0.0 8.5e-41 139.9 0.0 1.4 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin DUF2099 PF09872.9 gi|330507588|ref|YP_004384016.1| - 1.5e-105 352.0 0.4 1.8e-105 351.8 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) TrmB PF01978.19 gi|330507589|ref|YP_004384017.1| - 0.00055 19.8 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|330507589|ref|YP_004384017.1| - 0.078 12.9 0.1 0.18 11.7 0.1 1.6 1 0 0 1 1 1 0 MarR family Tubulin PF00091.25 gi|330507590|ref|YP_004384018.1| - 4.5e-42 144.5 0.1 7.3e-42 143.8 0.1 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|330507590|ref|YP_004384018.1| - 2.5e-33 114.2 1.1 7.8e-33 112.7 1.1 1.9 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|330507590|ref|YP_004384018.1| - 0.0044 16.9 0.3 0.011 15.7 0.3 1.8 1 1 0 1 1 1 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|330507590|ref|YP_004384018.1| - 6.7 5.8 9.3 2.2 7.4 3.0 2.4 1 1 0 2 2 2 0 Tubulin like HTH_24 PF13412.6 gi|330507591|ref|YP_004384019.1| - 2.9e-05 23.5 0.3 4.8e-05 22.8 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|330507591|ref|YP_004384019.1| - 0.0012 19.2 0.1 0.0019 18.5 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator DUF2250 PF10007.9 gi|330507591|ref|YP_004384019.1| - 0.0016 18.5 0.3 0.0033 17.5 0.1 1.5 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_12 PF08461.10 gi|330507591|ref|YP_004384019.1| - 0.0021 18.0 0.2 0.0063 16.4 0.1 2.0 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|330507591|ref|YP_004384019.1| - 0.0038 17.1 0.4 0.0068 16.2 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|330507591|ref|YP_004384019.1| - 0.0044 16.9 0.0 0.0072 16.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|330507591|ref|YP_004384019.1| - 0.0047 17.3 0.0 0.0074 16.6 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_20 PF12840.7 gi|330507591|ref|YP_004384019.1| - 0.0052 16.8 0.1 0.0096 16.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|330507591|ref|YP_004384019.1| - 0.023 14.3 0.1 0.033 13.9 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RepL PF05732.11 gi|330507591|ref|YP_004384019.1| - 0.045 13.2 0.0 0.064 12.7 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) RuvB_C PF05491.13 gi|330507591|ref|YP_004384019.1| - 0.06 13.2 0.1 0.089 12.7 0.1 1.3 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain MerR PF00376.23 gi|330507591|ref|YP_004384019.1| - 0.074 12.8 0.1 16 5.4 0.0 2.4 3 0 0 3 3 3 0 MerR family regulatory protein DNA_ligase_A_N PF04675.14 gi|330507592|ref|YP_004384020.1| - 8.3e-26 91.3 0.0 1.8e-25 90.3 0.0 1.6 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_M PF01068.21 gi|330507592|ref|YP_004384020.1| - 2.3e-14 53.5 0.0 3.7e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain UPF0016 PF01169.19 gi|330507592|ref|YP_004384020.1| - 0.067 13.5 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein family UPF0016 mRNA_cap_enzyme PF01331.19 gi|330507592|ref|YP_004384020.1| - 0.14 11.9 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 mRNA capping enzyme, catalytic domain Peptidase_S51 PF03575.17 gi|330507592|ref|YP_004384020.1| - 0.2 11.3 0.0 0.32 10.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S51 Radical_SAM PF04055.21 gi|330507593|ref|YP_004384021.1| - 6.4e-10 39.7 0.0 1e-09 39.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|330507593|ref|YP_004384021.1| - 3e-08 33.7 0.0 0.0014 18.4 1.9 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1848) SdrD_B PF17210.3 gi|330507594|ref|YP_004384022.1| - 5.3e-10 39.5 2.6 5.5e-10 39.5 0.2 2.3 2 0 0 2 2 2 1 SdrD B-like domain CarboxypepD_reg PF13620.6 gi|330507594|ref|YP_004384022.1| - 0.0053 17.0 2.6 0.015 15.5 0.1 2.9 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain SpaA PF17802.1 gi|330507594|ref|YP_004384022.1| - 0.013 15.8 0.0 0.013 15.8 0.0 2.9 2 1 0 2 2 2 0 Prealbumin-like fold domain DUF333 PF03891.15 gi|330507595|ref|YP_004384023.1| - 0.072 13.3 3.9 2.3 8.5 3.9 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF333) FAD_binding_3 PF01494.19 gi|330507596|ref|YP_004384024.1| - 2.6e-09 36.8 0.0 8.7e-07 28.5 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|330507596|ref|YP_004384024.1| - 1.4e-08 34.5 0.0 2e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|330507596|ref|YP_004384024.1| - 2.6e-07 30.1 0.0 6.6e-07 28.7 0.0 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|330507596|ref|YP_004384024.1| - 4.3e-07 29.5 0.2 0.0044 16.3 0.3 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|330507596|ref|YP_004384024.1| - 6.6e-07 28.5 0.7 0.003 16.5 0.1 2.8 1 1 1 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|330507596|ref|YP_004384024.1| - 2.6e-06 26.9 0.0 4.1e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|330507596|ref|YP_004384024.1| - 5.2e-06 25.8 0.0 6.9e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.24 gi|330507596|ref|YP_004384024.1| - 7.5e-06 25.8 0.1 0.0038 16.9 0.2 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|330507596|ref|YP_004384024.1| - 1.4e-05 24.0 0.1 0.00029 19.7 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|330507596|ref|YP_004384024.1| - 3.6e-05 23.0 0.1 8.7e-05 21.8 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|330507596|ref|YP_004384024.1| - 4.5e-05 22.8 0.0 7.7e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|330507596|ref|YP_004384024.1| - 0.00019 21.6 0.0 0.00074 19.7 0.0 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|330507596|ref|YP_004384024.1| - 0.0011 18.4 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|330507596|ref|YP_004384024.1| - 0.068 13.7 0.0 0.22 12.1 0.0 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|330507596|ref|YP_004384024.1| - 0.076 13.5 0.0 0.32 11.5 0.0 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 gi|330507596|ref|YP_004384024.1| - 0.1 11.9 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain P-II PF00543.22 gi|330507597|ref|YP_004384025.1| - 1e-35 122.4 0.3 1.2e-35 122.2 0.3 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|330507598|ref|YP_004384026.1| - 1.6e-127 425.5 43.4 1.8e-127 425.4 43.4 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family CBP_BcsG PF11658.8 gi|330507598|ref|YP_004384026.1| - 0.15 10.4 1.0 0.24 9.7 1.0 1.3 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsG Terminase_2 PF03592.16 gi|330507599|ref|YP_004384027.1| - 0.15 12.5 0.1 2.2 8.7 0.0 2.1 2 0 0 2 2 2 0 Terminase small subunit T2SSE PF00437.20 gi|330507600|ref|YP_004384028.1| - 1.7e-10 40.5 0.0 3e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.29 gi|330507600|ref|YP_004384028.1| - 7.7e-08 32.0 0.0 2.3e-07 30.5 0.0 1.8 1 0 0 1 1 1 1 KH domain PIN PF01850.21 gi|330507600|ref|YP_004384028.1| - 9.3e-08 32.6 0.0 2.1e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 PIN domain AAA_18 PF13238.6 gi|330507600|ref|YP_004384028.1| - 0.0016 19.0 0.0 0.0036 17.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain PIN_4 PF13638.6 gi|330507600|ref|YP_004384028.1| - 0.0021 18.3 0.0 0.0077 16.5 0.0 2.0 2 0 0 2 2 2 1 PIN domain AAA_16 PF13191.6 gi|330507600|ref|YP_004384028.1| - 0.0028 18.1 0.0 0.007 16.8 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|330507600|ref|YP_004384028.1| - 0.0036 17.5 0.0 0.014 15.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|330507600|ref|YP_004384028.1| - 0.0077 16.2 0.0 0.023 14.7 0.0 1.9 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) KH_2 PF07650.17 gi|330507600|ref|YP_004384028.1| - 0.0085 15.9 0.4 0.037 13.9 0.1 2.3 2 0 0 2 2 1 1 KH domain KH_4 PF13083.6 gi|330507600|ref|YP_004384028.1| - 0.013 15.4 0.0 0.052 13.4 0.0 2.0 1 0 0 1 1 1 0 KH domain AAA_29 PF13555.6 gi|330507600|ref|YP_004384028.1| - 0.016 14.9 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 gi|330507600|ref|YP_004384028.1| - 0.025 14.4 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|330507600|ref|YP_004384028.1| - 0.038 13.4 0.0 0.063 12.7 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|330507600|ref|YP_004384028.1| - 0.041 14.3 0.0 0.15 12.5 0.0 1.9 2 0 0 2 2 1 0 RNA helicase TIP49 PF06068.13 gi|330507600|ref|YP_004384028.1| - 0.044 13.0 0.7 0.089 12.0 0.0 1.7 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_25 PF13481.6 gi|330507600|ref|YP_004384028.1| - 0.046 13.3 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|330507600|ref|YP_004384028.1| - 0.047 13.4 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|330507600|ref|YP_004384028.1| - 0.053 12.9 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|330507600|ref|YP_004384028.1| - 0.055 13.4 0.0 0.19 11.7 0.0 1.9 2 0 0 2 2 1 0 NTPase AAA PF00004.29 gi|330507600|ref|YP_004384028.1| - 0.067 13.6 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|330507600|ref|YP_004384028.1| - 0.068 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein FliMN_C PF01052.20 gi|330507600|ref|YP_004384028.1| - 0.07 13.1 0.0 0.33 11.0 0.0 2.2 1 1 0 1 1 1 0 Type III flagellar switch regulator (C-ring) FliN C-term AAA_11 PF13086.6 gi|330507600|ref|YP_004384028.1| - 0.07 12.9 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|330507600|ref|YP_004384028.1| - 0.078 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|330507600|ref|YP_004384028.1| - 0.088 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|330507600|ref|YP_004384028.1| - 0.091 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|330507600|ref|YP_004384028.1| - 0.1 12.9 0.0 0.3 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|330507600|ref|YP_004384028.1| - 0.13 12.0 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain NUP50 PF08911.11 gi|330507600|ref|YP_004384028.1| - 0.23 12.2 0.4 0.57 10.9 0.4 1.6 1 0 0 1 1 1 0 NUP50 (Nucleoporin 50 kDa) Alpha_GJ PF03229.13 gi|330507602|ref|YP_004384030.1| - 7.9 7.1 8.9 5.5 7.6 7.2 1.7 1 1 1 2 2 2 0 Alphavirus glycoprotein J MutS_V PF00488.21 gi|330507603|ref|YP_004384031.1| - 4e-83 278.1 0.5 7.2e-83 277.3 0.5 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|330507603|ref|YP_004384031.1| - 5.3e-41 140.9 5.3 8.3e-41 140.3 4.2 1.8 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.20 gi|330507603|ref|YP_004384031.1| - 3.3e-40 136.9 0.0 6.9e-40 135.8 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|330507603|ref|YP_004384031.1| - 4.9e-29 100.5 0.0 1.1e-28 99.4 0.0 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|330507603|ref|YP_004384031.1| - 1.1e-13 51.7 0.2 6.6e-13 49.1 0.0 2.4 2 1 0 2 2 2 1 MutS domain II AAA_14 PF13173.6 gi|330507603|ref|YP_004384031.1| - 0.0014 18.6 0.0 0.0089 16.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|330507603|ref|YP_004384031.1| - 0.0092 15.6 0.0 0.024 14.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|330507603|ref|YP_004384031.1| - 0.06 13.8 0.5 0.37 11.3 0.0 2.4 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|330507603|ref|YP_004384031.1| - 0.077 13.5 0.1 0.97 10.0 0.0 2.8 2 1 0 3 3 3 0 ABC transporter AAA_29 PF13555.6 gi|330507603|ref|YP_004384031.1| - 0.092 12.5 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|330507603|ref|YP_004384031.1| - 0.12 12.1 0.1 0.35 10.6 0.1 1.8 1 0 0 1 1 1 0 AAA domain T3SS_ExsE PF18286.1 gi|330507603|ref|YP_004384031.1| - 0.14 12.1 3.0 0.18 11.8 0.6 2.4 1 1 1 2 2 2 0 Type III secretion system ExsE MutL_C PF08676.11 gi|330507604|ref|YP_004384032.1| - 1.8e-35 121.8 0.0 3.4e-35 121.0 0.0 1.5 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|330507604|ref|YP_004384032.1| - 2.4e-31 107.9 0.0 4.3e-31 107.1 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|330507604|ref|YP_004384032.1| - 2.5e-13 50.0 0.1 4.5e-13 49.2 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|330507604|ref|YP_004384032.1| - 2.1e-08 34.7 0.1 3.7e-08 33.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AIRS_C PF02769.22 gi|330507605|ref|YP_004384033.1| - 1.4e-17 64.2 1.0 2.6e-17 63.4 1.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|330507605|ref|YP_004384033.1| - 3e-09 37.4 0.9 1.1e-08 35.6 0.9 2.0 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain MarR_2 PF12802.7 gi|330507606|ref|YP_004384034.1| - 0.0043 16.9 0.0 0.0063 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|330507606|ref|YP_004384034.1| - 0.01 15.7 0.0 0.028 14.3 0.0 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Terpene_synth PF01397.21 gi|330507606|ref|YP_004384034.1| - 0.015 15.0 0.2 2 8.1 0.0 2.0 1 1 1 2 2 2 0 Terpene synthase, N-terminal domain PadR PF03551.14 gi|330507606|ref|YP_004384034.1| - 0.026 14.5 0.0 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family SMC_ScpB PF04079.16 gi|330507606|ref|YP_004384034.1| - 0.042 13.5 0.1 0.11 12.1 0.0 1.6 1 1 0 1 1 1 0 Segregation and condensation complex subunit ScpB RuvA_C PF07499.13 gi|330507606|ref|YP_004384034.1| - 0.15 12.5 0.1 5 7.7 0.0 2.5 2 0 0 2 2 2 0 RuvA, C-terminal domain TFIIE_alpha PF02002.17 gi|330507607|ref|YP_004384035.1| - 2.7e-19 68.9 0.6 4.2e-19 68.3 0.6 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_9 PF08221.11 gi|330507607|ref|YP_004384035.1| - 0.0067 16.5 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain RepL PF05732.11 gi|330507607|ref|YP_004384035.1| - 0.0098 15.3 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_IclR PF09339.10 gi|330507607|ref|YP_004384035.1| - 0.011 15.5 0.2 0.14 12.0 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|330507607|ref|YP_004384035.1| - 0.016 14.7 0.5 0.036 13.6 0.5 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding HTH_11 PF08279.12 gi|330507607|ref|YP_004384035.1| - 0.041 13.8 0.2 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_Crp_2 PF13545.6 gi|330507607|ref|YP_004384035.1| - 0.048 13.6 0.7 0.16 12.0 0.0 2.1 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|330507607|ref|YP_004384035.1| - 0.056 13.2 0.1 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|330507607|ref|YP_004384035.1| - 0.082 12.6 0.5 0.17 11.5 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|330507608|ref|YP_004384036.1| - 0.042 13.7 0.0 0.09 12.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2551 PF10826.8 gi|330507609|ref|YP_004384037.1| - 1.4e-29 102.2 0.3 1.6e-29 102.0 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) LIM PF00412.22 gi|330507610|ref|YP_004384038.1| - 1.4e-05 25.2 3.1 2.6e-05 24.4 3.1 1.4 1 0 0 1 1 1 1 LIM domain HTH_24 PF13412.6 gi|330507610|ref|YP_004384038.1| - 0.00028 20.4 0.0 0.00047 19.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|330507610|ref|YP_004384038.1| - 0.0066 16.2 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain zf-dskA_traR PF01258.17 gi|330507610|ref|YP_004384038.1| - 0.019 14.9 4.6 0.041 13.8 4.6 1.5 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.7 gi|330507610|ref|YP_004384038.1| - 0.025 14.6 3.1 0.052 13.6 3.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon TrmB PF01978.19 gi|330507610|ref|YP_004384038.1| - 0.026 14.4 0.0 0.036 13.9 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB zinc_ribbon_2 PF13240.6 gi|330507610|ref|YP_004384038.1| - 0.029 14.1 4.6 0.052 13.3 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Sigma70_r4 PF04545.16 gi|330507610|ref|YP_004384038.1| - 0.063 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DUF4423 PF14394.6 gi|330507610|ref|YP_004384038.1| - 0.088 12.5 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_DeoR PF08220.12 gi|330507610|ref|YP_004384038.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain FeoC PF09012.10 gi|330507610|ref|YP_004384038.1| - 0.25 11.4 0.0 0.25 11.4 0.0 2.5 2 1 1 3 3 3 0 FeoC like transcriptional regulator DUF1272 PF06906.11 gi|330507610|ref|YP_004384038.1| - 0.36 11.0 4.5 0.68 10.1 4.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf_UBZ PF18439.1 gi|330507610|ref|YP_004384038.1| - 0.78 9.4 5.9 0.31 10.7 1.4 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|330507611|ref|YP_004384039.1| - 3.1e-23 81.5 0.0 1.1e-22 79.7 0.0 2.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330507611|ref|YP_004384039.1| - 4.4e-07 30.1 0.5 4.4e-07 30.1 0.5 1.7 2 0 0 2 2 2 1 Probable transposase DZR PF12773.7 gi|330507611|ref|YP_004384039.1| - 0.035 14.1 0.1 0.089 12.8 0.1 1.6 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|330507611|ref|YP_004384039.1| - 0.078 13.0 0.0 0.21 11.6 0.0 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1646 PF07854.12 gi|330507612|ref|YP_004384040.1| - 2.2e-10 40.5 3.1 2.5e-10 40.3 3.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Proton_antipo_M PF00361.20 gi|330507613|ref|YP_004384041.1| - 4e-44 151.0 28.4 1.1e-43 149.5 28.4 1.8 1 0 0 1 1 1 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|330507613|ref|YP_004384041.1| - 0.0006 19.2 6.6 0.0006 19.2 6.6 2.6 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein UPF0697 PF15117.6 gi|330507614|ref|YP_004384042.1| - 0.037 14.1 0.0 0.045 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0697 Colicin_E5 PF12106.8 gi|330507615|ref|YP_004384043.1| - 5e-08 33.1 1.3 0.32 11.3 0.2 6.1 6 1 1 7 7 7 2 Colicin E5 ribonuclease domain DUF2064 PF09837.9 gi|330507615|ref|YP_004384043.1| - 8.2e-05 22.4 11.4 0.24 11.2 0.0 5.7 6 0 0 6 6 6 3 Uncharacterized protein conserved in bacteria (DUF2064) DERM PF14704.6 gi|330507615|ref|YP_004384043.1| - 0.0081 16.6 0.7 0.15 12.5 0.1 3.0 3 2 0 3 3 3 1 Dermatopontin Proton_antipo_M PF00361.20 gi|330507616|ref|YP_004384044.1| - 1.6e-58 198.3 26.6 1.6e-58 198.3 26.6 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|330507616|ref|YP_004384044.1| - 4.4e-05 23.5 2.1 4.4e-05 23.5 2.1 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TRIQK PF15168.6 gi|330507616|ref|YP_004384044.1| - 0.51 10.3 2.3 5.4 7.0 0.2 3.3 3 0 0 3 3 3 0 Triple QxxK/R motif-containing protein family Oxidored_q2 PF00420.24 gi|330507617|ref|YP_004384045.1| - 9.5e-23 79.8 0.9 1.7e-22 79.1 0.9 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|330507617|ref|YP_004384045.1| - 0.0061 16.5 2.0 0.0061 16.5 2.0 1.9 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) Deltameth_res PF16020.5 gi|330507617|ref|YP_004384045.1| - 0.077 12.9 1.9 5.8 6.9 0.1 2.4 2 0 0 2 2 2 0 Deltamethrin resistance MNHE PF01899.16 gi|330507618|ref|YP_004384046.1| - 6.4e-34 116.8 1.5 7.4e-34 116.6 1.5 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.13 gi|330507619|ref|YP_004384047.1| - 1.1e-17 64.1 3.3 1.1e-17 64.1 3.3 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Deltameth_res PF16020.5 gi|330507619|ref|YP_004384047.1| - 0.25 11.2 0.1 0.25 11.2 0.1 2.6 3 0 0 3 3 3 0 Deltamethrin resistance PASTA PF03793.19 gi|330507621|ref|YP_004384049.1| - 0.071 13.0 0.0 0.094 12.6 0.0 1.3 1 0 0 1 1 1 0 PASTA domain Endonuc-BglII PF09195.11 gi|330507622|ref|YP_004384050.1| - 0.11 12.3 0.1 0.13 12.0 0.1 1.1 1 0 0 1 1 1 0 Restriction endonuclease BglII BPL_N PF09825.9 gi|330507623|ref|YP_004384051.1| - 0.15 11.1 0.0 14 4.7 0.0 2.0 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal NikR_C PF08753.11 gi|330507624|ref|YP_004384052.1| - 4.5e-34 116.5 4.6 6.4e-34 116.0 4.6 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|330507624|ref|YP_004384052.1| - 2.2e-10 40.1 0.1 4e-10 39.3 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|330507624|ref|YP_004384052.1| - 0.052 13.7 0.0 0.093 12.8 0.0 1.5 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Fibrillarin PF01269.17 gi|330507625|ref|YP_004384053.1| - 5.1e-73 244.9 0.0 5.7e-73 244.8 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.12 gi|330507625|ref|YP_004384053.1| - 0.0069 15.5 0.0 0.0095 15.1 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_25 PF13649.6 gi|330507625|ref|YP_004384053.1| - 0.024 15.4 0.0 0.035 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Peptidase_S24 PF00717.23 gi|330507626|ref|YP_004384054.1| - 0.0001 22.2 0.0 0.00026 20.9 0.0 1.7 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|330507627|ref|YP_004384055.1| - 7e-11 41.9 0.0 1.2e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|330507627|ref|YP_004384055.1| - 3.8e-10 40.6 0.1 6.6e-10 39.8 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|330507627|ref|YP_004384055.1| - 1.3e-08 35.2 0.0 2.7e-08 34.2 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|330507627|ref|YP_004384055.1| - 0.00016 21.6 0.2 0.00033 20.6 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4539 PF15072.6 gi|330507627|ref|YP_004384055.1| - 0.077 13.0 0.1 0.18 11.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4539) ThiC_Rad_SAM PF01964.18 gi|330507630|ref|YP_004384058.1| - 2.7e-169 563.4 0.0 3.1e-169 563.2 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Lactamase_B PF00753.27 gi|330507631|ref|YP_004384059.1| - 2.8e-29 102.6 0.0 3.5e-29 102.2 0.0 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|330507631|ref|YP_004384059.1| - 1.4e-07 31.2 0.0 2.4e-07 30.5 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|330507631|ref|YP_004384059.1| - 0.0035 16.8 0.0 0.0052 16.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|330507631|ref|YP_004384059.1| - 0.038 13.9 0.0 0.15 12.0 0.0 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Aminotran_3 PF00202.21 gi|330507632|ref|YP_004384060.1| - 8.2e-112 373.8 0.0 1.1e-111 373.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.20 gi|330507632|ref|YP_004384060.1| - 0.09 11.3 0.0 0.13 10.7 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme SERTA PF06031.13 gi|330507632|ref|YP_004384060.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 SERTA motif Aminotran_1_2 PF00155.21 gi|330507633|ref|YP_004384061.1| - 1.6e-46 159.1 0.0 2e-46 158.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|330507633|ref|YP_004384061.1| - 2.3e-06 26.8 0.0 0.00044 19.2 0.0 2.1 2 0 0 2 2 2 2 Allinase DUF3670 PF12419.8 gi|330507633|ref|YP_004384061.1| - 0.024 14.5 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 SNF2 Helicase protein AAA_18 PF13238.6 gi|330507634|ref|YP_004384062.1| - 2.8e-19 69.9 0.0 3.8e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|330507634|ref|YP_004384062.1| - 0.0012 19.1 0.1 0.003 17.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain UPF0180 PF03698.13 gi|330507634|ref|YP_004384062.1| - 0.0045 17.1 0.0 0.13 12.4 0.0 2.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0180) CoaE PF01121.20 gi|330507634|ref|YP_004384062.1| - 0.0072 16.0 0.1 0.3 10.7 0.0 2.2 1 1 1 2 2 2 1 Dephospho-CoA kinase AAA PF00004.29 gi|330507634|ref|YP_004384062.1| - 0.0086 16.5 1.5 0.029 14.8 1.5 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|330507634|ref|YP_004384062.1| - 0.017 15.4 0.4 0.043 14.1 0.4 1.8 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|330507634|ref|YP_004384062.1| - 0.018 14.8 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|330507634|ref|YP_004384062.1| - 0.02 15.3 0.4 0.067 13.6 0.4 1.8 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|330507634|ref|YP_004384062.1| - 0.024 14.5 0.1 0.052 13.4 0.1 1.5 1 0 0 1 1 1 0 NTPase AAA_33 PF13671.6 gi|330507634|ref|YP_004384062.1| - 0.07 13.3 0.5 0.42 10.8 0.1 2.1 1 1 1 2 2 2 0 AAA domain MeaB PF03308.16 gi|330507634|ref|YP_004384062.1| - 0.084 11.8 0.1 1.1 8.2 0.0 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|330507634|ref|YP_004384062.1| - 0.098 12.6 0.0 0.44 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|330507634|ref|YP_004384062.1| - 0.16 12.3 0.1 0.29 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|330507634|ref|YP_004384062.1| - 0.16 11.6 0.0 2.6 7.7 0.0 2.1 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 gi|330507634|ref|YP_004384062.1| - 0.21 11.1 0.6 0.32 10.5 0.6 1.7 1 1 0 1 1 1 0 AAA domain Pribosyltran_N PF13793.6 gi|330507635|ref|YP_004384063.1| - 5e-18 65.1 0.0 3.8e-15 55.8 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|330507635|ref|YP_004384063.1| - 1.2e-17 63.9 0.8 2.1e-17 63.1 0.8 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|330507635|ref|YP_004384063.1| - 1e-08 35.4 0.4 1.7e-08 34.7 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|330507635|ref|YP_004384063.1| - 6.2e-06 25.8 0.1 1e-05 25.1 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|330507635|ref|YP_004384063.1| - 0.00087 18.8 0.2 0.13 11.8 0.1 2.3 1 1 1 2 2 2 2 Phosphoribosyl transferase RCS1 PF07326.11 gi|330507635|ref|YP_004384063.1| - 0.2 11.5 0.0 0.28 11.1 0.0 1.1 1 0 0 1 1 1 0 Regulator of chromosome segregation 1 PmbA_TldD PF01523.16 gi|330507636|ref|YP_004384064.1| - 7.3e-52 176.9 0.1 9.2e-52 176.6 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PAC2 PF09754.9 gi|330507637|ref|YP_004384065.1| - 3e-52 177.7 0.1 3.5e-52 177.5 0.1 1.0 1 0 0 1 1 1 1 PAC2 family EIF_2_alpha PF07541.12 gi|330507638|ref|YP_004384066.1| - 6.6e-23 81.0 0.0 1.3e-22 80.1 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|330507638|ref|YP_004384066.1| - 3.6e-12 46.4 0.1 7.3e-12 45.5 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain LPD39 PF18858.1 gi|330507638|ref|YP_004384066.1| - 0.0036 17.4 1.9 0.006 16.7 1.9 1.3 1 0 0 1 1 1 1 Large polyvalent protein associated domain 39 DUF3662 PF12401.8 gi|330507638|ref|YP_004384066.1| - 0.033 14.6 0.0 0.098 13.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2662) Ribosomal_S27e PF01667.17 gi|330507639|ref|YP_004384067.1| - 2.6e-25 87.9 1.9 2.7e-25 87.8 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zinc_ribbon_6 PF14599.6 gi|330507639|ref|YP_004384067.1| - 0.00039 20.4 1.6 0.00049 20.1 1.6 1.2 1 0 0 1 1 1 1 Zinc-ribbon HypA PF01155.19 gi|330507639|ref|YP_004384067.1| - 0.0071 16.4 0.5 0.0075 16.3 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|330507639|ref|YP_004384067.1| - 0.028 14.3 0.9 0.038 13.9 0.9 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Sgf11 PF08209.11 gi|330507639|ref|YP_004384067.1| - 0.056 13.0 2.3 0.18 11.4 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-BED PF02892.15 gi|330507639|ref|YP_004384067.1| - 0.11 12.5 2.1 0.94 9.6 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger DUF1451 PF07295.11 gi|330507639|ref|YP_004384067.1| - 0.12 12.5 0.8 0.14 12.2 0.8 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain ZZ PF00569.17 gi|330507639|ref|YP_004384067.1| - 0.3 10.9 4.0 0.71 9.7 4.0 1.6 1 1 0 1 1 1 0 Zinc finger, ZZ type TFIIS_C PF01096.18 gi|330507639|ref|YP_004384067.1| - 0.68 9.8 3.9 17 5.4 0.4 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L44 PF00935.19 gi|330507640|ref|YP_004384068.1| - 1.8e-23 82.8 3.3 2.3e-23 82.4 3.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 C1_4 PF07975.12 gi|330507640|ref|YP_004384068.1| - 0.029 14.6 0.1 0.27 11.5 0.0 2.1 2 0 0 2 2 2 0 TFIIH C1-like domain Ribosomal_L33 PF00471.20 gi|330507640|ref|YP_004384068.1| - 0.11 13.0 1.2 0.11 13.0 1.2 2.4 2 0 0 2 2 2 0 Ribosomal protein L33 Zn_Tnp_IS1595 PF12760.7 gi|330507640|ref|YP_004384068.1| - 0.23 11.4 3.6 8.6 6.4 1.0 2.3 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|330507640|ref|YP_004384068.1| - 0.3 11.6 4.2 6.4 7.4 1.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-LITAF-like PF10601.9 gi|330507640|ref|YP_004384068.1| - 0.37 11.1 2.8 0.79 10.0 0.2 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain VirE PF05272.11 gi|330507641|ref|YP_004384069.1| - 0.042 13.6 0.1 0.059 13.1 0.1 1.1 1 0 0 1 1 1 0 Virulence-associated protein E Sld5 PF05916.11 gi|330507641|ref|YP_004384069.1| - 0.058 13.9 1.1 0.11 12.9 0.3 1.9 2 0 0 2 2 2 0 GINS complex protein DNA_primase_S PF01896.19 gi|330507642|ref|YP_004384070.1| - 1.2e-17 64.5 0.0 2.8e-16 60.1 0.0 2.1 1 1 0 1 1 1 1 DNA primase small subunit DNA_pol_lambd_f PF10391.9 gi|330507642|ref|YP_004384070.1| - 0.091 12.6 0.0 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda CN_hydrolase PF00795.22 gi|330507643|ref|YP_004384071.1| - 3.5e-34 118.3 0.0 4.1e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Ion_trans PF00520.31 gi|330507644|ref|YP_004384072.1| - 1.2e-29 103.3 8.1 1.4e-29 103.0 8.1 1.0 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|330507644|ref|YP_004384072.1| - 8.3e-15 54.5 3.0 8.3e-15 54.5 3.0 2.1 2 1 0 2 2 2 1 Ion channel Sgf11 PF08209.11 gi|330507644|ref|YP_004384072.1| - 0.13 11.8 0.1 0.23 11.1 0.1 1.4 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) DUF3420 PF11900.8 gi|330507645|ref|YP_004384073.1| - 0.09 12.9 0.1 1.8 8.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3420) Peripla_BP_2 PF01497.18 gi|330507646|ref|YP_004384074.1| - 1.1e-27 97.1 0.0 1.7e-27 96.5 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Chorein_N PF12624.7 gi|330507646|ref|YP_004384074.1| - 0.044 13.9 0.1 0.078 13.1 0.1 1.3 1 0 0 1 1 1 0 N-terminal region of Chorein or VPS13 Dockerin_1 PF00404.18 gi|330507646|ref|YP_004384074.1| - 0.065 13.4 4.2 0.16 12.2 4.2 1.7 1 0 0 1 1 1 0 Dockerin type I domain DMRL_synthase PF00885.19 gi|330507648|ref|YP_004384076.1| - 9.7e-16 57.9 0.2 1.1e-15 57.7 0.2 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF2859 PF11072.8 gi|330507648|ref|YP_004384076.1| - 0.042 13.6 0.2 0.63 9.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2859) HATPase_c PF02518.26 gi|330507649|ref|YP_004384077.1| - 4e-32 111.0 0.0 7.9e-32 110.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|330507649|ref|YP_004384077.1| - 1.5e-27 96.0 0.1 3.9e-27 94.7 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|330507649|ref|YP_004384077.1| - 1.2e-21 77.1 0.0 4.1e-10 39.9 0.0 2.4 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|330507649|ref|YP_004384077.1| - 3.2e-21 75.1 0.3 1.1e-20 73.5 0.1 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|330507649|ref|YP_004384077.1| - 1.6e-15 57.2 0.0 4.8e-13 49.3 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|330507649|ref|YP_004384077.1| - 7.1e-13 48.5 0.0 3.4e-08 33.5 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|330507649|ref|YP_004384077.1| - 6.2e-12 45.6 0.0 5.1e-09 36.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|330507649|ref|YP_004384077.1| - 5.8e-08 32.6 0.0 0.00015 21.7 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c_3 PF13589.6 gi|330507649|ref|YP_004384077.1| - 0.0011 18.8 0.0 0.0026 17.6 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|330507649|ref|YP_004384077.1| - 0.0082 16.7 0.0 1.3 9.6 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS_11 PF14598.6 gi|330507649|ref|YP_004384077.1| - 0.094 12.8 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 PAS domain Rubrerythrin PF02915.17 gi|330507651|ref|YP_004384079.1| - 6e-21 75.3 14.5 8.9e-20 71.5 14.5 2.0 1 1 0 1 1 1 1 Rubrerythrin zf-C2H2_3 PF13878.6 gi|330507651|ref|YP_004384079.1| - 0.017 15.0 0.5 0.61 10.0 0.0 2.5 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DZR PF12773.7 gi|330507651|ref|YP_004384079.1| - 0.026 14.6 0.8 0.043 13.9 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ferritin PF00210.24 gi|330507651|ref|YP_004384079.1| - 0.072 13.0 5.1 2.5 8.0 5.1 2.1 1 1 0 1 1 1 0 Ferritin-like domain Haem_oxygenas_2 PF14518.6 gi|330507651|ref|YP_004384079.1| - 0.08 12.7 5.0 1.3 8.7 0.2 2.1 1 1 0 2 2 2 0 Iron-containing redox enzyme zf-FPG_IleRS PF06827.14 gi|330507651|ref|YP_004384079.1| - 0.12 12.3 1.7 8.7 6.3 0.2 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DNA_ligase_ZBD PF03119.16 gi|330507651|ref|YP_004384079.1| - 0.47 10.5 6.7 6.1 7.0 0.4 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2_9 PF16293.5 gi|330507651|ref|YP_004384079.1| - 1.1 9.1 2.8 31 4.5 0.3 2.6 1 1 1 2 2 2 0 C2H2 type zinc-finger (1 copy) TF_Zn_Ribbon PF08271.12 gi|330507651|ref|YP_004384079.1| - 1.4 8.5 5.2 6 6.5 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Cys_rich_CPCC PF14206.6 gi|330507651|ref|YP_004384079.1| - 1.6 8.6 4.3 1.8 8.5 1.4 2.4 2 1 0 2 2 2 0 Cysteine-rich CPCC Zn-C2H2_12 PF18112.1 gi|330507651|ref|YP_004384079.1| - 2.6 8.6 6.1 19 5.9 0.3 2.8 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-C2H2 PF00096.26 gi|330507651|ref|YP_004384079.1| - 3.6 8.2 5.5 7.6 7.2 0.1 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|330507651|ref|YP_004384079.1| - 6.4 7.4 6.5 7.9 7.1 1.1 2.4 1 1 1 2 2 2 0 Zinc-finger double domain Hjc PF01870.18 gi|330507652|ref|YP_004384080.1| - 0.016 15.2 0.0 0.083 12.9 0.0 2.0 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Thymidylat_synt PF00303.19 gi|330507653|ref|YP_004384081.1| - 8e-18 64.5 0.0 1.3e-17 63.9 0.0 1.3 1 1 0 1 1 1 1 Thymidylate synthase Pentapeptide_3 PF13576.6 gi|330507654|ref|YP_004384082.1| - 7.2e-15 54.9 23.5 5.4e-07 29.7 11.5 3.8 2 1 2 4 4 4 3 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|330507654|ref|YP_004384082.1| - 0.0044 16.6 8.7 0.038 13.7 0.5 3.9 4 1 0 4 4 4 1 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|330507654|ref|YP_004384082.1| - 0.011 15.9 7.2 0.053 13.7 7.2 2.1 1 1 0 1 1 1 0 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.16 gi|330507654|ref|YP_004384082.1| - 6.7 6.7 7.2 41 4.2 7.1 2.3 1 1 0 1 1 1 0 Ion channel HATPase_c PF02518.26 gi|330507655|ref|YP_004384083.1| - 1.9e-32 112.1 0.5 4e-32 111.1 0.5 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|330507655|ref|YP_004384083.1| - 9.7e-28 96.6 1.2 3.9e-27 94.6 0.7 2.2 2 0 0 2 2 2 1 Response regulator receiver domain GAF_2 PF13185.6 gi|330507655|ref|YP_004384083.1| - 2.3e-21 76.5 0.0 3.6e-16 59.7 0.0 3.1 3 0 0 3 3 3 2 GAF domain HisKA PF00512.25 gi|330507655|ref|YP_004384083.1| - 3e-21 75.2 0.8 9.5e-21 73.6 0.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|330507655|ref|YP_004384083.1| - 1.2e-20 73.8 0.0 1.5e-11 44.6 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|330507655|ref|YP_004384083.1| - 2.7e-17 62.8 0.0 3.7e-13 49.6 0.0 3.6 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.7 gi|330507655|ref|YP_004384083.1| - 4.4e-14 52.6 0.0 0.00018 21.7 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|330507655|ref|YP_004384083.1| - 8.6e-10 38.6 0.0 0.00031 20.7 0.0 3.8 3 0 0 3 3 3 2 PAS fold GAF PF01590.26 gi|330507655|ref|YP_004384083.1| - 2e-09 38.2 0.0 1.7e-05 25.4 0.0 2.6 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.6 gi|330507655|ref|YP_004384083.1| - 0.00013 22.3 0.0 0.12 12.7 0.0 3.4 3 0 0 3 3 3 1 GAF domain HATPase_c_3 PF13589.6 gi|330507655|ref|YP_004384083.1| - 0.00024 20.9 0.1 0.00049 19.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|330507655|ref|YP_004384083.1| - 0.0017 18.3 0.0 0.0093 16.0 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|330507655|ref|YP_004384083.1| - 0.015 15.2 0.0 0.041 13.8 0.0 1.7 1 0 0 1 1 1 0 GHKL domain MarR_2 PF12802.7 gi|330507656|ref|YP_004384084.1| - 0.00014 21.6 0.0 0.00035 20.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|330507656|ref|YP_004384084.1| - 0.00083 19.2 0.0 0.0028 17.5 0.0 1.9 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|330507656|ref|YP_004384084.1| - 0.00098 18.6 0.0 0.0022 17.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|330507656|ref|YP_004384084.1| - 0.0016 18.3 0.0 0.0034 17.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|330507656|ref|YP_004384084.1| - 0.0027 17.7 0.0 0.0059 16.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|330507656|ref|YP_004384084.1| - 0.0056 17.0 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 gi|330507656|ref|YP_004384084.1| - 0.0066 16.3 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|330507656|ref|YP_004384084.1| - 0.0079 16.0 1.6 0.022 14.6 0.0 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain DprA_WH PF17782.1 gi|330507656|ref|YP_004384084.1| - 0.022 14.8 0.0 0.059 13.5 0.0 1.7 1 0 0 1 1 1 0 DprA winged helix domain HTH_27 PF13463.6 gi|330507656|ref|YP_004384084.1| - 0.045 14.2 0.1 0.22 12.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|330507656|ref|YP_004384084.1| - 0.051 13.5 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|330507656|ref|YP_004384084.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MMPL PF03176.15 gi|330507657|ref|YP_004384085.1| - 8.8e-48 162.9 18.4 6.7e-24 84.4 11.2 2.4 2 0 0 2 2 2 2 MMPL family ACR_tran PF00873.19 gi|330507657|ref|YP_004384085.1| - 1.2e-11 43.1 20.3 5.7e-07 27.6 2.4 3.0 3 0 0 3 3 3 3 AcrB/AcrD/AcrF family Sterol-sensing PF12349.8 gi|330507657|ref|YP_004384085.1| - 1.5e-09 37.9 12.2 4.7e-06 26.5 1.7 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|330507657|ref|YP_004384085.1| - 3e-08 33.3 8.5 3e-08 33.3 8.5 2.7 2 1 0 2 2 2 1 Protein export membrane protein CD34_antigen PF06365.12 gi|330507657|ref|YP_004384085.1| - 0.77 9.3 6.1 6.8 6.2 0.3 2.9 2 1 1 3 3 3 0 CD34/Podocalyxin family HTH_IclR PF09339.10 gi|330507658|ref|YP_004384086.1| - 0.017 14.9 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|330507658|ref|YP_004384086.1| - 0.042 13.4 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DASH_Dad4 PF08650.10 gi|330507658|ref|YP_004384086.1| - 0.11 12.5 0.0 0.26 11.3 0.0 1.7 1 1 0 1 1 1 0 DASH complex subunit Dad4 LPP PF04728.13 gi|330507658|ref|YP_004384086.1| - 0.4 11.1 5.0 0.74 10.3 0.3 2.6 1 1 1 2 2 2 0 Lipoprotein leucine-zipper Hydrolase PF00702.26 gi|330507659|ref|YP_004384087.1| - 3e-17 63.6 0.0 1.6e-16 61.3 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Asparaginase_2 PF01112.18 gi|330507659|ref|YP_004384087.1| - 0.018 14.1 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 Asparaginase Hydrolase_3 PF08282.12 gi|330507659|ref|YP_004384087.1| - 0.024 14.4 0.0 0.077 12.7 0.0 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|330507659|ref|YP_004384087.1| - 0.23 11.5 0.0 1.7 8.7 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Ribosomal_S10 PF00338.22 gi|330507662|ref|YP_004384090.1| - 2e-25 88.9 0.0 2.2e-25 88.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.27 gi|330507663|ref|YP_004384091.1| - 1.1e-53 181.7 0.0 1.6e-53 181.2 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|330507663|ref|YP_004384091.1| - 6.2e-38 129.6 0.4 2.4e-37 127.7 0.0 2.1 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|330507663|ref|YP_004384091.1| - 3.9e-16 59.2 1.8 2e-15 57.0 0.3 2.8 4 0 0 4 4 4 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|330507663|ref|YP_004384091.1| - 1.4e-05 25.2 0.0 0.0003 20.8 0.0 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|330507663|ref|YP_004384091.1| - 0.0037 17.1 0.4 0.0099 15.8 0.4 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.12 gi|330507663|ref|YP_004384091.1| - 0.042 13.2 0.0 0.13 11.6 0.0 1.7 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region GTP_EFTU PF00009.27 gi|330507664|ref|YP_004384092.1| - 8.4e-62 208.2 0.2 1.4e-61 207.5 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|330507664|ref|YP_004384092.1| - 3.8e-27 94.5 0.0 3.4e-26 91.4 0.0 2.6 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|330507664|ref|YP_004384092.1| - 3.4e-25 87.9 1.6 5e-25 87.4 0.5 2.0 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|330507664|ref|YP_004384092.1| - 6.4e-25 87.0 0.1 3.1e-24 84.8 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|330507664|ref|YP_004384092.1| - 5.3e-15 55.6 1.7 1.6e-14 54.0 1.7 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|330507664|ref|YP_004384092.1| - 0.00035 20.6 0.0 0.00084 19.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|330507664|ref|YP_004384092.1| - 0.0032 17.3 0.1 0.016 15.0 0.1 2.2 2 1 1 3 3 3 1 Class II release factor RF3, C-terminal domain Ras PF00071.22 gi|330507664|ref|YP_004384092.1| - 0.057 13.0 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Ras family AA_kinase PF00696.28 gi|330507665|ref|YP_004384093.1| - 5.6e-44 150.5 1.2 7.3e-44 150.2 0.0 1.8 2 1 0 2 2 2 1 Amino acid kinase family ACT PF01842.25 gi|330507665|ref|YP_004384093.1| - 3.1e-21 74.8 1.1 6.3e-10 38.7 0.2 2.9 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|330507665|ref|YP_004384093.1| - 4.3e-21 74.5 1.7 2.8e-09 36.6 0.1 3.1 3 0 0 3 3 3 2 ACT domain LytR_C PF13399.6 gi|330507665|ref|YP_004384093.1| - 3.9e-05 24.6 0.6 0.16 12.9 0.1 2.9 2 1 1 3 3 3 2 LytR cell envelope-related transcriptional attenuator Nitro_FeMo-Co PF02579.17 gi|330507665|ref|YP_004384093.1| - 0.09 13.1 2.0 4.1 7.8 0.2 2.9 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor Asparaginase_C PF17763.1 gi|330507665|ref|YP_004384093.1| - 0.1 12.8 4.6 4.3 7.6 0.2 2.8 1 1 1 2 2 2 0 Glutaminase/Asparaginase C-terminal domain AIRS_C PF02769.22 gi|330507666|ref|YP_004384094.1| - 6.9e-23 81.5 0.0 1.3e-22 80.6 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|330507666|ref|YP_004384094.1| - 1.8e-16 60.5 1.1 3.3e-16 59.7 1.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain CbiA PF01656.23 gi|330507667|ref|YP_004384095.1| - 2.9e-19 69.4 0.0 4.3e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|330507667|ref|YP_004384095.1| - 2.2e-12 47.3 0.0 4.1e-11 43.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|330507667|ref|YP_004384095.1| - 6e-11 42.3 0.6 2.3e-07 30.5 1.1 3.0 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|330507667|ref|YP_004384095.1| - 2.6e-09 36.7 0.2 6.7e-08 32.1 0.0 2.3 2 1 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|330507667|ref|YP_004384095.1| - 7.3e-08 32.2 0.0 0.00017 21.1 0.1 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|330507667|ref|YP_004384095.1| - 1.9e-05 24.3 0.2 0.0001 21.9 0.2 2.1 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 gi|330507667|ref|YP_004384095.1| - 2.7e-05 24.0 0.0 0.00012 21.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|330507667|ref|YP_004384095.1| - 0.0019 17.9 0.2 0.0071 16.0 0.1 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|330507667|ref|YP_004384095.1| - 0.0043 16.1 0.3 0.0093 15.0 0.1 1.7 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 gi|330507667|ref|YP_004384095.1| - 0.0044 16.8 0.0 0.017 14.9 0.0 1.9 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_18 PF13238.6 gi|330507667|ref|YP_004384095.1| - 0.0059 17.2 0.0 0.0096 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|330507667|ref|YP_004384095.1| - 0.0072 16.3 0.2 0.03 14.2 0.0 2.0 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.6 gi|330507667|ref|YP_004384095.1| - 0.0073 16.7 0.0 0.015 15.7 0.0 1.5 2 0 0 2 2 1 1 AAA ATPase domain NACHT PF05729.12 gi|330507667|ref|YP_004384095.1| - 0.017 15.0 0.1 0.029 14.3 0.1 1.3 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.17 gi|330507667|ref|YP_004384095.1| - 0.018 15.2 0.6 0.09 12.9 0.1 2.2 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_26 PF13500.6 gi|330507667|ref|YP_004384095.1| - 0.019 14.8 0.1 0.21 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|330507667|ref|YP_004384095.1| - 0.03 14.0 0.3 0.055 13.2 0.3 1.7 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|330507667|ref|YP_004384095.1| - 0.047 13.3 0.2 0.074 12.7 0.2 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|330507667|ref|YP_004384095.1| - 0.05 13.4 0.1 0.09 12.5 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.22 gi|330507667|ref|YP_004384095.1| - 0.061 12.5 0.3 0.12 11.6 0.3 1.5 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|330507667|ref|YP_004384095.1| - 0.062 13.0 0.2 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein MobB PF03205.14 gi|330507667|ref|YP_004384095.1| - 0.065 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|330507667|ref|YP_004384095.1| - 0.069 13.4 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|330507667|ref|YP_004384095.1| - 0.14 12.7 0.0 0.23 12.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_25 PF13481.6 gi|330507667|ref|YP_004384095.1| - 0.14 11.7 0.2 1.9 8.0 0.1 2.1 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|330507667|ref|YP_004384095.1| - 0.17 11.4 0.1 8.8 5.8 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Ribonuc_red_lgC PF02867.15 gi|330507668|ref|YP_004384096.1| - 1e-153 512.6 0.0 1.5e-151 505.5 0.0 2.3 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|330507668|ref|YP_004384096.1| - 1.2e-23 82.9 0.0 3.6e-23 81.4 0.0 1.9 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|330507668|ref|YP_004384096.1| - 1.4e-20 73.6 1.9 3.7e-20 72.3 1.9 1.7 1 0 0 1 1 1 1 ATP cone domain DNA_alkylation PF08713.11 gi|330507669|ref|YP_004384097.1| - 7.3e-58 195.8 0.1 8.3e-58 195.6 0.1 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme Synaptonemal_3 PF15191.6 gi|330507670|ref|YP_004384098.1| - 0.044 13.6 0.2 0.054 13.3 0.2 1.3 1 1 0 1 1 1 0 Synaptonemal complex central element protein 3 DDE_Tnp_1 PF01609.21 gi|330507671|ref|YP_004384099.1| - 1.9e-25 89.8 0.0 3.3e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|330507671|ref|YP_004384099.1| - 0.014 14.7 0.3 0.021 14.1 0.3 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|330507671|ref|YP_004384099.1| - 0.019 13.3 0.0 0.03 12.6 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 Tudor_FRX1 PF18336.1 gi|330507671|ref|YP_004384099.1| - 0.075 13.0 1.0 1.4 8.9 0.1 2.8 3 0 0 3 3 3 0 Fragile X mental retardation Tudor domain Peptidase_M50 PF02163.22 gi|330507672|ref|YP_004384100.1| - 1.6e-09 37.5 7.4 0.00012 21.4 0.6 2.8 1 1 1 2 2 2 2 Peptidase family M50 VbhA PF18495.1 gi|330507673|ref|YP_004384101.1| - 0.002 18.0 0.3 0.0033 17.3 0.3 1.4 1 0 0 1 1 1 1 Antitoxin VbhA Glyco_trans_1_3 PF13528.6 gi|330507674|ref|YP_004384102.1| - 7.8e-11 41.8 0.0 0.00036 19.9 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.16 gi|330507674|ref|YP_004384102.1| - 0.00011 22.3 0.0 0.00016 21.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_4 PF13439.6 gi|330507674|ref|YP_004384102.1| - 0.00015 21.8 0.0 0.00033 20.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|330507674|ref|YP_004384102.1| - 0.043 14.3 0.0 0.073 13.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain MTS_N PF08468.11 gi|330507674|ref|YP_004384102.1| - 0.12 12.5 0.0 4.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase small domain N-terminal NAT PF04768.13 gi|330507674|ref|YP_004384102.1| - 0.12 12.0 0.1 23 4.6 0.1 2.7 3 0 0 3 3 3 0 NAT, N-acetyltransferase, of N-acetylglutamate synthase GFO_IDH_MocA PF01408.22 gi|330507674|ref|YP_004384102.1| - 0.13 13.1 0.0 2.3 9.1 0.0 2.3 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold RHH_3 PF12651.7 gi|330507675|ref|YP_004384103.1| - 0.065 13.2 0.4 0.42 10.6 0.2 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix domain Hist_deacetyl PF00850.19 gi|330507676|ref|YP_004384104.1| - 2.7e-64 217.6 0.0 3.9e-64 217.0 0.0 1.3 1 0 0 1 1 1 1 Histone deacetylase domain Hydantoinase_A PF01968.18 gi|330507677|ref|YP_004384105.1| - 9.8e-44 149.8 10.0 6.5e-41 140.5 3.9 2.8 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|330507677|ref|YP_004384105.1| - 2e-29 102.6 7.2 1.6e-26 93.1 3.4 3.4 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|330507677|ref|YP_004384105.1| - 3.1e-05 22.8 5.4 0.013 14.1 0.1 3.1 3 0 0 3 3 3 2 MutL protein FtsA PF14450.6 gi|330507677|ref|YP_004384105.1| - 0.002 18.5 5.8 0.67 10.4 0.2 3.4 2 1 0 2 2 2 2 Cell division protein FtsA Ppx-GppA PF02541.16 gi|330507677|ref|YP_004384105.1| - 0.0069 15.9 1.3 0.12 11.8 0.0 2.7 3 0 0 3 3 3 1 Ppx/GppA phosphatase family DDR PF08841.10 gi|330507677|ref|YP_004384105.1| - 0.067 12.2 0.2 0.067 12.2 0.2 2.8 3 0 0 3 3 3 0 Diol dehydratase reactivase ATPase-like domain BcrAD_BadFG PF01869.20 gi|330507677|ref|YP_004384105.1| - 0.076 12.5 12.6 20 4.6 12.6 3.3 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.11 gi|330507677|ref|YP_004384105.1| - 0.11 11.7 1.7 1.8 7.7 0.1 2.6 2 0 0 2 2 2 0 StbA protein MreB_Mbl PF06723.13 gi|330507677|ref|YP_004384105.1| - 1.9 7.2 7.9 0.19 10.5 0.3 2.6 3 0 0 3 3 3 0 MreB/Mbl protein MFS_1 PF07690.16 gi|330507678|ref|YP_004384106.1| - 6.7e-17 61.5 20.6 7.8e-17 61.2 20.6 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|330507678|ref|YP_004384106.1| - 0.039 12.3 3.0 0.052 11.9 3.0 1.2 1 0 0 1 1 1 0 Transmembrane secretion effector RTX PF02382.15 gi|330507678|ref|YP_004384106.1| - 0.065 12.9 0.7 0.094 12.4 0.7 1.1 1 0 0 1 1 1 0 N-terminal domain in RTX protein DUF2484 PF10658.9 gi|330507678|ref|YP_004384106.1| - 0.23 11.8 5.2 1.3 9.4 2.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2484) SSF PF00474.17 gi|330507679|ref|YP_004384107.1| - 2.5e-46 158.4 32.7 3.4e-46 157.9 32.7 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Calici_PP_N PF08405.11 gi|330507679|ref|YP_004384107.1| - 0.067 12.0 0.5 0.11 11.3 0.5 1.2 1 0 0 1 1 1 0 Viral polyprotein N-terminal MC1 PF05854.11 gi|330507680|ref|YP_004384108.1| - 4.5e-38 129.4 0.4 5.7e-38 129.1 0.4 1.1 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 tRNA-synt_2 PF00152.20 gi|330507681|ref|YP_004384109.1| - 2.7e-87 292.8 0.0 3.2e-87 292.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|330507681|ref|YP_004384109.1| - 5.4e-12 45.5 0.0 1e-11 44.7 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|330507681|ref|YP_004384109.1| - 0.00065 19.2 0.1 0.12 11.8 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) DUF805 PF05656.14 gi|330507682|ref|YP_004384110.1| - 0.14 12.6 1.7 0.15 12.5 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) DUF835 PF05763.12 gi|330507683|ref|YP_004384111.1| - 8.8e-54 180.9 0.2 2.1e-37 127.9 0.0 2.7 3 0 0 3 3 3 2 Protein of unknown function (DUF835) BofA PF07441.11 gi|330507684|ref|YP_004384112.1| - 6.3e-09 35.9 20.3 7.5e-09 35.7 20.3 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA DuoxA PF10204.9 gi|330507684|ref|YP_004384112.1| - 1.6 7.7 7.3 1.7 7.6 7.3 1.1 1 0 0 1 1 1 0 Dual oxidase maturation factor Cdc6_C PF09079.11 gi|330507685|ref|YP_004384113.1| - 7.6e-21 73.9 0.4 2.5e-20 72.2 0.4 1.9 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|330507685|ref|YP_004384113.1| - 2.1e-13 51.0 0.7 1.9e-11 44.6 0.0 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|330507685|ref|YP_004384113.1| - 4e-13 49.8 0.0 9.3e-13 48.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|330507685|ref|YP_004384113.1| - 3.4e-10 40.4 0.0 1.1e-09 38.8 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|330507685|ref|YP_004384113.1| - 1.7e-06 27.6 0.1 4e-06 26.4 0.0 1.6 2 0 0 2 2 2 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|330507685|ref|YP_004384113.1| - 5.4e-06 26.5 2.2 3.6e-05 23.8 1.0 2.4 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|330507685|ref|YP_004384113.1| - 9.2e-06 25.7 0.0 2e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 NACHT domain RuvB_N PF05496.12 gi|330507685|ref|YP_004384113.1| - 4.8e-05 23.2 0.2 0.021 14.6 0.0 2.8 2 1 1 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain KAP_NTPase PF07693.14 gi|330507685|ref|YP_004384113.1| - 0.00016 21.0 0.5 0.013 14.8 0.0 2.2 1 1 0 2 2 2 1 KAP family P-loop domain Sigma54_activat PF00158.26 gi|330507685|ref|YP_004384113.1| - 0.00034 20.4 0.1 0.00089 19.0 0.0 1.7 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|330507685|ref|YP_004384113.1| - 0.00069 18.9 0.0 0.0013 18.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|330507685|ref|YP_004384113.1| - 0.0019 17.5 0.0 0.0031 16.7 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_18 PF13238.6 gi|330507685|ref|YP_004384113.1| - 0.0036 17.8 0.0 0.01 16.3 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_7 PF12775.7 gi|330507685|ref|YP_004384113.1| - 0.0036 16.8 0.0 0.0065 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region DUF2075 PF09848.9 gi|330507685|ref|YP_004384113.1| - 0.0044 16.3 0.0 0.0062 15.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DEAD PF00270.29 gi|330507685|ref|YP_004384113.1| - 0.0069 16.2 0.7 0.027 14.2 0.1 2.2 2 1 0 2 2 2 1 DEAD/DEAH box helicase Zeta_toxin PF06414.12 gi|330507685|ref|YP_004384113.1| - 0.0072 15.6 0.0 0.036 13.4 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin TIP49 PF06068.13 gi|330507685|ref|YP_004384113.1| - 0.01 15.1 0.0 0.019 14.2 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain RNA_helicase PF00910.22 gi|330507685|ref|YP_004384113.1| - 0.017 15.5 0.0 0.052 13.9 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_2 PF07724.14 gi|330507685|ref|YP_004384113.1| - 0.019 15.1 1.0 0.11 12.6 0.2 2.5 2 1 0 2 2 1 0 AAA domain (Cdc48 subfamily) ResIII PF04851.15 gi|330507685|ref|YP_004384113.1| - 0.023 14.7 0.0 0.048 13.7 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_24 PF13479.6 gi|330507685|ref|YP_004384113.1| - 0.028 14.2 0.4 0.028 14.2 0.4 1.9 2 1 0 2 2 2 0 AAA domain DUF2498 PF10692.9 gi|330507685|ref|YP_004384113.1| - 0.034 14.0 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2498) TsaE PF02367.17 gi|330507685|ref|YP_004384113.1| - 0.039 14.0 0.0 0.086 12.8 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Trans_reg_C PF00486.28 gi|330507685|ref|YP_004384113.1| - 0.048 13.7 0.2 0.49 10.5 0.2 2.4 2 0 0 2 2 2 0 Transcriptional regulatory protein, C terminal AAA_5 PF07728.14 gi|330507685|ref|YP_004384113.1| - 0.054 13.5 0.2 0.38 10.8 0.2 2.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_assoc_2 PF16193.5 gi|330507685|ref|YP_004384113.1| - 0.057 13.8 0.1 0.18 12.1 0.1 1.9 1 0 0 1 1 1 0 AAA C-terminal domain Bac_DnaA PF00308.18 gi|330507685|ref|YP_004384113.1| - 0.078 12.8 0.0 0.46 10.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial dnaA protein DUF87 PF01935.17 gi|330507685|ref|YP_004384113.1| - 0.19 11.8 2.5 3.8 7.6 0.3 2.9 2 1 1 3 3 3 0 Helicase HerA, central domain UPF0147 PF03685.13 gi|330507686|ref|YP_004384114.1| - 9.3e-30 102.5 2.6 1e-29 102.4 2.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) Auto_anti-p27 PF06677.12 gi|330507687|ref|YP_004384115.1| - 2e-10 40.7 1.9 4.2e-10 39.6 1.9 1.6 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ada_Zn_binding PF02805.16 gi|330507688|ref|YP_004384116.1| - 9e-09 35.2 0.0 1.6e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Metal binding domain of Ada TP_methylase PF00590.20 gi|330507689|ref|YP_004384117.1| - 2.8e-20 73.2 0.5 8.8e-19 68.3 0.5 2.5 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.17 gi|330507690|ref|YP_004384118.1| - 1.7e-46 158.6 1.4 2.2e-46 158.2 1.4 1.1 1 0 0 1 1 1 1 CbiD TruB_C PF09142.11 gi|330507690|ref|YP_004384118.1| - 0.037 13.8 0.1 0.096 12.5 0.1 1.7 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal CbiC PF02570.15 gi|330507691|ref|YP_004384119.1| - 3.2e-60 203.2 0.1 3.6e-60 203.0 0.1 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.20 gi|330507692|ref|YP_004384120.1| - 2.5e-63 213.8 1.6 8.9e-34 117.3 0.2 2.1 2 0 0 2 2 2 2 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF4244 PF14029.6 gi|330507692|ref|YP_004384120.1| - 0.022 14.2 0.0 0.055 12.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4244) CbiG_C PF01890.16 gi|330507693|ref|YP_004384121.1| - 1.1e-27 96.9 0.2 1.7e-27 96.3 0.2 1.3 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus CbiG_N PF11760.8 gi|330507693|ref|YP_004384121.1| - 8.7e-27 92.9 0.1 2.3e-26 91.6 0.1 1.8 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal TP_methylase PF00590.20 gi|330507694|ref|YP_004384122.1| - 6.1e-47 160.3 0.2 7.1e-47 160.1 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|330507695|ref|YP_004384123.1| - 4.1e-29 102.0 0.0 1.5e-28 100.2 0.0 1.7 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_31 PF13847.6 gi|330507696|ref|YP_004384124.1| - 2.8e-06 27.2 0.0 3.7e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330507696|ref|YP_004384124.1| - 6.8e-05 23.5 0.0 0.00012 22.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507696|ref|YP_004384124.1| - 8.9e-05 23.1 0.0 0.00018 22.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|330507696|ref|YP_004384124.1| - 9e-05 22.0 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|330507696|ref|YP_004384124.1| - 0.00011 21.7 0.0 0.00015 21.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|330507696|ref|YP_004384124.1| - 0.0033 17.3 0.0 0.0047 16.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330507696|ref|YP_004384124.1| - 0.018 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain NodS PF05401.11 gi|330507696|ref|YP_004384124.1| - 0.035 13.7 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_12 PF08242.12 gi|330507696|ref|YP_004384124.1| - 0.069 13.9 0.0 0.13 13.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|330507696|ref|YP_004384124.1| - 0.085 12.5 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 DNA methylase DOT1 PF08123.13 gi|330507696|ref|YP_004384124.1| - 0.096 12.2 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_24 PF13578.6 gi|330507696|ref|YP_004384124.1| - 0.14 13.2 0.0 0.22 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain ATP-grasp_3 PF02655.14 gi|330507697|ref|YP_004384125.1| - 1e-30 106.9 0.0 1.3e-30 106.5 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|330507697|ref|YP_004384125.1| - 0.00068 19.0 0.0 0.41 9.8 0.0 2.1 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp PfkB PF00294.24 gi|330507700|ref|YP_004384128.1| - 2.1e-55 188.2 0.3 2.4e-55 188.0 0.3 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|330507700|ref|YP_004384128.1| - 0.00013 21.4 0.1 0.00025 20.5 0.1 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Robl_LC7 PF03259.17 gi|330507700|ref|YP_004384128.1| - 0.029 14.1 1.2 0.29 10.9 0.0 3.0 4 0 0 4 4 4 0 Roadblock/LC7 domain DUF1624 PF07786.12 gi|330507701|ref|YP_004384129.1| - 4.1e-68 229.3 16.9 5.2e-68 228.9 16.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) OpgC_C PF10129.9 gi|330507701|ref|YP_004384129.1| - 3.7e-07 29.4 12.3 8.7e-05 21.6 10.4 2.5 1 1 0 2 2 2 2 OpgC protein Acyl_transf_3 PF01757.22 gi|330507701|ref|YP_004384129.1| - 6.4e-07 28.7 30.9 0.00024 20.3 13.2 2.7 1 1 1 2 2 2 2 Acyltransferase family Acylphosphatase PF00708.18 gi|330507702|ref|YP_004384130.1| - 1.4e-18 67.0 1.9 3e-18 66.0 0.1 2.3 2 1 1 3 3 3 1 Acylphosphatase Baculo_PEP_C PF04513.12 gi|330507702|ref|YP_004384130.1| - 3.3e-05 24.0 5.2 0.14 12.2 0.3 2.9 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus ApoLp-III PF07464.11 gi|330507702|ref|YP_004384130.1| - 8.8e-05 22.6 10.3 0.00016 21.8 8.4 2.1 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) Apolipoprotein PF01442.18 gi|330507702|ref|YP_004384130.1| - 0.00018 21.5 15.7 0.0003 20.7 15.5 1.5 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Halo_GVPC PF05465.13 gi|330507702|ref|YP_004384130.1| - 0.0009 19.4 6.7 0.0044 17.2 1.1 4.1 3 2 1 4 4 2 1 Halobacterial gas vesicle protein C (GVPC) repeat DLP_helical PF18709.1 gi|330507702|ref|YP_004384130.1| - 0.0023 17.2 11.1 0.0054 16.0 11.1 1.6 1 1 0 1 1 1 1 Dynamin-like helical domain Fzo_mitofusin PF04799.13 gi|330507702|ref|YP_004384130.1| - 0.013 15.0 6.7 0.054 13.0 2.2 2.7 1 1 1 2 2 2 0 fzo-like conserved region PIN_8 PF18476.1 gi|330507702|ref|YP_004384130.1| - 0.021 14.7 5.9 0.032 14.1 5.9 1.4 1 0 0 1 1 1 0 PIN like domain Golgin_A5 PF09787.9 gi|330507702|ref|YP_004384130.1| - 0.031 13.8 10.9 0.041 13.3 10.9 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 DUF4407 PF14362.6 gi|330507702|ref|YP_004384130.1| - 0.037 13.4 12.1 0.025 13.9 10.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Prominin PF05478.11 gi|330507702|ref|YP_004384130.1| - 0.038 12.0 6.0 0.051 11.5 6.0 1.1 1 0 0 1 1 1 0 Prominin HIP1_clath_bdg PF16515.5 gi|330507702|ref|YP_004384130.1| - 0.043 14.4 11.6 0.14 12.8 8.0 2.5 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF720 PF05302.11 gi|330507702|ref|YP_004384130.1| - 0.045 13.6 0.1 4.7 7.1 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF720) ApoO PF09769.9 gi|330507702|ref|YP_004384130.1| - 0.054 13.5 0.7 1.1 9.2 0.5 2.3 1 1 1 2 2 2 0 Apolipoprotein O Lant_dehydr_C PF14028.6 gi|330507702|ref|YP_004384130.1| - 0.063 12.8 0.7 0.24 10.9 0.7 1.8 1 1 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term Fusion_gly PF00523.18 gi|330507702|ref|YP_004384130.1| - 0.081 11.2 1.3 0.18 10.0 0.1 1.9 1 1 1 2 2 2 0 Fusion glycoprotein F0 DUF148 PF02520.17 gi|330507702|ref|YP_004384130.1| - 0.083 13.0 4.5 0.1 12.7 2.4 2.1 1 1 1 2 2 2 0 Domain of unknown function DUF148 DUF1664 PF07889.12 gi|330507702|ref|YP_004384130.1| - 0.087 12.9 13.9 0.66 10.0 2.6 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|330507702|ref|YP_004384130.1| - 0.1 11.5 16.3 0.57 9.0 8.4 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein Syntaxin-6_N PF09177.11 gi|330507702|ref|YP_004384130.1| - 0.11 13.0 12.3 3.9 8.1 0.6 3.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF1640 PF07798.11 gi|330507702|ref|YP_004384130.1| - 0.12 12.4 15.6 2.9 7.9 8.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) GCS2 PF04107.13 gi|330507702|ref|YP_004384130.1| - 0.15 11.3 0.7 0.3 10.4 0.6 1.5 1 1 0 1 1 1 0 Glutamate-cysteine ligase family 2(GCS2) DUF1706 PF08020.11 gi|330507702|ref|YP_004384130.1| - 0.24 11.3 3.0 9.8 6.1 0.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1706) DUF3584 PF12128.8 gi|330507702|ref|YP_004384130.1| - 0.27 8.7 13.6 0.6 7.5 13.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Atg14 PF10186.9 gi|330507702|ref|YP_004384130.1| - 0.27 10.3 13.7 2 7.4 13.7 2.0 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Vps51 PF08700.11 gi|330507702|ref|YP_004384130.1| - 0.32 11.1 9.0 1.9 8.6 2.1 3.6 1 1 2 3 3 3 0 Vps51/Vps67 DUF3958 PF13125.6 gi|330507702|ref|YP_004384130.1| - 0.34 11.1 5.4 0.42 10.8 0.7 2.5 2 1 1 3 3 2 0 Protein of unknown function (DUF3958) DUF2203 PF09969.9 gi|330507702|ref|YP_004384130.1| - 0.38 11.5 11.0 1.3 9.8 5.6 2.9 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) TPR_MLP1_2 PF07926.12 gi|330507702|ref|YP_004384130.1| - 0.39 10.8 12.3 0.39 10.8 6.4 2.7 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein YtxH PF12732.7 gi|330507702|ref|YP_004384130.1| - 0.63 10.6 19.8 3.2 8.3 5.7 3.8 1 1 1 2 2 2 0 YtxH-like protein RRF PF01765.19 gi|330507702|ref|YP_004384130.1| - 0.83 9.6 18.2 1.9 8.4 1.0 2.7 2 1 1 3 3 2 0 Ribosome recycling factor FliT PF05400.13 gi|330507702|ref|YP_004384130.1| - 0.96 10.3 17.5 1.9 9.4 4.8 3.2 1 1 2 3 3 3 0 Flagellar protein FliT Arm-DNA-bind_5 PF17293.2 gi|330507702|ref|YP_004384130.1| - 1 9.9 8.1 6.7 7.2 2.4 3.0 1 1 2 3 3 3 0 Arm DNA-binding domain DUF883 PF05957.13 gi|330507702|ref|YP_004384130.1| - 1.1 9.9 13.4 25 5.5 1.0 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Cnn_1N PF07989.11 gi|330507702|ref|YP_004384130.1| - 2.5 8.3 10.7 10 6.4 1.1 3.3 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 DUF2390 PF09523.10 gi|330507702|ref|YP_004384130.1| - 2.7 8.3 7.1 7.6 6.9 4.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2390) CdvA PF18822.1 gi|330507702|ref|YP_004384130.1| - 2.8 7.8 20.8 1.6 8.6 1.8 3.5 3 1 2 5 5 3 0 CdvA-like coiled-coil domain DUF3618 PF12277.8 gi|330507702|ref|YP_004384130.1| - 4.4 7.6 18.9 6.5 7.1 0.1 4.5 2 1 1 4 4 3 0 Protein of unknown function (DUF3618) Med9 PF07544.13 gi|330507702|ref|YP_004384130.1| - 4.7 7.4 11.1 7.8 6.7 2.8 3.2 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 IFP_35_N PF07334.13 gi|330507702|ref|YP_004384130.1| - 4.7 7.4 5.9 4 7.6 3.2 2.2 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus Med4 PF10018.9 gi|330507702|ref|YP_004384130.1| - 5 6.8 9.7 4.2 7.0 8.1 1.7 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 TMPIT PF07851.13 gi|330507702|ref|YP_004384130.1| - 5.2 6.2 5.4 4 6.6 3.4 1.7 1 1 2 3 3 3 0 TMPIT-like protein NPV_P10 PF05531.12 gi|330507702|ref|YP_004384130.1| - 5.2 7.6 11.0 3.3 8.2 1.8 3.2 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF3216 PF11505.8 gi|330507702|ref|YP_004384130.1| - 6.7 7.0 9.7 12 6.1 1.7 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3216) Fib_alpha PF08702.10 gi|330507702|ref|YP_004384130.1| - 7.5 6.7 10.0 42 4.3 3.0 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Uso1_p115_C PF04871.13 gi|330507702|ref|YP_004384130.1| - 8.1 6.8 14.6 23 5.4 2.7 2.3 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region RICH PF05062.12 gi|330507702|ref|YP_004384130.1| - 9.7 6.6 10.9 0.4 11.0 2.8 2.7 3 1 0 3 3 2 0 RICH domain TFIIB PF00382.19 gi|330507703|ref|YP_004384131.1| - 7e-44 147.7 3.2 1.4e-21 76.3 1.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|330507703|ref|YP_004384131.1| - 7.4e-19 67.0 1.3 7.4e-19 67.0 1.3 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|330507703|ref|YP_004384131.1| - 8.3e-05 22.0 0.1 0.048 13.2 0.1 3.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|330507703|ref|YP_004384131.1| - 0.0089 15.8 2.3 0.063 13.1 0.1 3.1 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain RPA_interact_C PF14768.6 gi|330507703|ref|YP_004384131.1| - 0.011 16.3 0.0 0.65 10.6 0.0 2.4 2 0 0 2 2 2 0 Replication protein A interacting C-terminal Ribosomal_S27e PF01667.17 gi|330507703|ref|YP_004384131.1| - 0.012 15.3 0.4 0.033 13.9 0.4 1.6 1 0 0 1 1 1 0 Ribosomal protein S27 Cyclin_C PF02984.19 gi|330507703|ref|YP_004384131.1| - 0.018 15.1 0.0 9.1 6.4 0.0 2.4 2 0 0 2 2 2 0 Cyclin, C-terminal domain Cyclin_N PF00134.23 gi|330507703|ref|YP_004384131.1| - 0.022 14.5 0.0 1.8 8.3 0.0 2.3 1 1 1 2 2 2 0 Cyclin, N-terminal domain Terminase_GpA PF05876.12 gi|330507703|ref|YP_004384131.1| - 0.043 12.4 0.2 0.064 11.8 0.2 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) HTH_Crp_2 PF13545.6 gi|330507703|ref|YP_004384131.1| - 0.044 13.8 2.2 12 6.0 0.0 3.6 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain eIF-5_eIF-2B PF01873.17 gi|330507703|ref|YP_004384131.1| - 0.055 13.3 0.4 0.78 9.6 0.4 2.4 2 0 0 2 2 2 0 Domain found in IF2B/IF5 RB_B PF01857.20 gi|330507703|ref|YP_004384131.1| - 0.057 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain HTH_3 PF01381.22 gi|330507703|ref|YP_004384131.1| - 0.061 13.4 0.1 3.8 7.7 0.0 3.6 3 1 1 4 4 4 0 Helix-turn-helix Stc1 PF12898.7 gi|330507703|ref|YP_004384131.1| - 0.086 13.4 0.4 1.7 9.2 0.3 2.5 2 0 0 2 2 2 0 Stc1 domain OrfB_Zn_ribbon PF07282.11 gi|330507703|ref|YP_004384131.1| - 0.11 12.4 0.4 0.28 11.1 0.4 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF5419 PF17441.2 gi|330507703|ref|YP_004384131.1| - 0.15 12.2 0.0 11 6.3 0.0 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5419) zf-ACC PF17848.1 gi|330507703|ref|YP_004384131.1| - 0.22 11.6 5.1 5.9 7.1 3.4 2.8 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 gi|330507703|ref|YP_004384131.1| - 0.51 9.8 3.5 8.6 5.9 3.5 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|330507703|ref|YP_004384131.1| - 0.56 10.4 4.7 1.8 8.7 0.3 3.1 2 1 1 3 3 3 0 Zinc ribbon domain Auto_anti-p27 PF06677.12 gi|330507703|ref|YP_004384131.1| - 1 9.6 3.3 5.8 7.2 1.5 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) SR1P PF13790.6 gi|330507703|ref|YP_004384131.1| - 1.2 9.3 4.1 26 5.0 0.1 2.9 3 0 0 3 3 3 0 SR1 protein RNA_POL_M_15KD PF02150.16 gi|330507703|ref|YP_004384131.1| - 1.5 8.8 3.9 5.6 6.9 0.5 2.5 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit HTH_31 PF13560.6 gi|330507703|ref|YP_004384131.1| - 2.6 8.5 11.1 5.6 7.4 0.1 4.2 4 2 0 4 4 4 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|330507703|ref|YP_004384131.1| - 5.6 6.9 7.0 1.9 8.4 0.1 3.5 3 1 0 3 3 3 0 Homeodomain-like domain PhnA_Zn_Ribbon PF08274.12 gi|330507703|ref|YP_004384131.1| - 9.4 6.3 6.3 2.2 8.3 2.5 1.9 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Gar1 PF04410.14 gi|330507704|ref|YP_004384132.1| - 6.3e-17 61.8 0.0 6.5e-17 61.7 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region NOG1_N PF17835.1 gi|330507705|ref|YP_004384133.1| - 3.7e-43 147.3 0.1 4.2e-42 143.8 0.1 2.1 1 1 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|330507705|ref|YP_004384133.1| - 1.2e-21 76.2 0.0 2.2e-21 75.4 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|330507705|ref|YP_004384133.1| - 6.9e-21 74.5 0.0 1.2e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|330507705|ref|YP_004384133.1| - 4.1e-12 45.9 0.0 6e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B AIG1 PF04548.16 gi|330507705|ref|YP_004384133.1| - 0.061 12.6 0.0 0.089 12.1 0.0 1.2 1 0 0 1 1 1 0 AIG1 family Dynamin_N PF00350.23 gi|330507705|ref|YP_004384133.1| - 0.071 13.2 0.1 12 5.9 0.0 2.3 1 1 1 2 2 2 0 Dynamin family Ras PF00071.22 gi|330507705|ref|YP_004384133.1| - 0.12 12.0 0.0 28 4.3 0.0 2.8 3 0 0 3 3 3 0 Ras family MTS PF05175.14 gi|330507706|ref|YP_004384134.1| - 4.1e-12 46.0 0.0 4.4e-11 42.6 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|330507706|ref|YP_004384134.1| - 1.7e-09 38.3 0.0 1.1e-08 35.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330507706|ref|YP_004384134.1| - 3e-08 33.7 0.0 3.1e-07 30.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330507706|ref|YP_004384134.1| - 1.5e-07 31.4 0.0 1.9e-07 31.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507706|ref|YP_004384134.1| - 1.7e-06 28.6 0.0 1.1e-05 25.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|330507706|ref|YP_004384134.1| - 3.2e-05 23.5 0.0 3.9e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.12 gi|330507706|ref|YP_004384134.1| - 4.1e-05 24.3 0.0 0.001 19.8 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain NodS PF05401.11 gi|330507706|ref|YP_004384134.1| - 0.00019 21.1 0.0 0.00031 20.4 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) Cons_hypoth95 PF03602.15 gi|330507706|ref|YP_004384134.1| - 0.00024 20.8 0.5 0.0026 17.4 0.5 2.2 1 1 0 1 1 1 1 Conserved hypothetical protein 95 MetW PF07021.12 gi|330507706|ref|YP_004384134.1| - 0.00036 20.2 0.0 0.00049 19.8 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.20 gi|330507706|ref|YP_004384134.1| - 0.0016 17.6 0.0 0.002 17.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0146 PF03686.13 gi|330507706|ref|YP_004384134.1| - 0.0022 17.9 0.0 0.0043 16.9 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) TPMT PF05724.11 gi|330507706|ref|YP_004384134.1| - 0.015 14.9 0.0 0.027 14.1 0.0 1.4 2 0 0 2 2 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.6 gi|330507706|ref|YP_004384134.1| - 0.037 14.0 0.0 0.049 13.6 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|330507706|ref|YP_004384134.1| - 0.057 12.4 0.0 0.073 12.1 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase N6_Mtase PF02384.16 gi|330507706|ref|YP_004384134.1| - 0.068 12.4 0.0 0.15 11.3 0.0 1.4 1 1 1 2 2 2 0 N-6 DNA Methylase MethyltransfD12 PF02086.15 gi|330507706|ref|YP_004384134.1| - 0.077 12.7 0.0 0.25 11.0 0.0 1.7 1 1 1 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_18 PF12847.7 gi|330507706|ref|YP_004384134.1| - 0.078 12.9 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain N6-adenineMlase PF10237.9 gi|330507706|ref|YP_004384134.1| - 0.097 12.5 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase UPF0020 PF01170.18 gi|330507706|ref|YP_004384134.1| - 0.12 12.0 0.0 2.2 7.9 0.0 2.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Eco57I PF07669.11 gi|330507706|ref|YP_004384134.1| - 0.12 12.9 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 Eco57I restriction-modification methylase PCMT PF01135.19 gi|330507706|ref|YP_004384134.1| - 0.13 12.0 0.0 0.27 10.9 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.16 gi|330507706|ref|YP_004384134.1| - 0.13 12.0 0.0 0.32 10.7 0.0 1.6 2 0 0 2 2 2 0 Met-10+ like-protein Methyltransf_16 PF10294.9 gi|330507706|ref|YP_004384134.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Pox_MCEL PF03291.16 gi|330507706|ref|YP_004384134.1| - 0.18 10.9 0.0 0.4 9.7 0.0 1.5 2 0 0 2 2 2 0 mRNA capping enzyme Ubie_methyltran PF01209.18 gi|330507706|ref|YP_004384134.1| - 0.19 11.0 0.0 0.28 10.5 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PLDc_2 PF13091.6 gi|330507707|ref|YP_004384135.1| - 1.2e-11 44.7 0.0 1.9e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 PLD-like domain RE_NgoFVII PF09565.10 gi|330507707|ref|YP_004384135.1| - 0.0027 17.1 0.0 0.0051 16.2 0.0 1.4 1 0 0 1 1 1 1 NgoFVII restriction endonuclease PLDc PF00614.22 gi|330507707|ref|YP_004384135.1| - 0.017 15.3 0.0 0.035 14.3 0.0 1.5 1 0 0 1 1 1 0 Phospholipase D Active site motif Lebercilin PF15619.6 gi|330507707|ref|YP_004384135.1| - 0.13 11.9 11.2 0.2 11.3 11.2 1.2 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Occludin_ELL PF07303.13 gi|330507707|ref|YP_004384135.1| - 0.45 11.3 6.5 0.83 10.4 6.5 1.3 1 0 0 1 1 1 0 Occludin homology domain Cpn60_TCP1 PF00118.24 gi|330507708|ref|YP_004384136.1| - 2.5e-169 564.1 19.9 2.8e-169 563.9 19.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_5 PF07728.14 gi|330507708|ref|YP_004384136.1| - 0.096 12.7 0.2 3.7 7.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) CSD PF00313.22 gi|330507709|ref|YP_004384137.1| - 5.3e-18 64.6 2.2 5.7e-18 64.5 2.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain UPF0016 PF01169.19 gi|330507710|ref|YP_004384138.1| - 7.1e-42 141.6 13.6 3.1e-23 81.9 3.1 2.1 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 TauE PF01925.19 gi|330507710|ref|YP_004384138.1| - 0.00076 19.2 12.8 0.18 11.4 3.6 2.2 1 1 1 2 2 2 2 Sulfite exporter TauE/SafE DUF2304 PF10066.9 gi|330507710|ref|YP_004384138.1| - 0.009 16.2 0.8 0.009 16.2 0.8 2.4 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2304) DUF3784 PF12650.7 gi|330507710|ref|YP_004384138.1| - 0.057 13.6 0.3 0.057 13.6 0.3 4.0 2 2 1 4 4 4 0 Domain of unknown function (DUF3784) L_HMGIC_fpl PF10242.9 gi|330507710|ref|YP_004384138.1| - 0.064 13.4 1.9 0.12 12.6 1.9 1.4 1 0 0 1 1 1 0 Lipoma HMGIC fusion partner-like protein Colicin_V PF02674.16 gi|330507710|ref|YP_004384138.1| - 0.39 10.7 15.6 0.31 11.0 6.5 2.2 2 0 0 2 2 2 0 Colicin V production protein PIRT PF15099.6 gi|330507710|ref|YP_004384138.1| - 0.64 9.6 4.8 0.48 10.0 2.9 1.7 1 1 0 1 1 1 0 Phosphoinositide-interacting protein family SirB PF04247.12 gi|330507710|ref|YP_004384138.1| - 5.4 7.1 11.0 1.4 9.0 3.7 2.6 2 1 1 3 3 3 0 Invasion gene expression up-regulator, SirB RseC_MucC PF04246.12 gi|330507710|ref|YP_004384138.1| - 6 6.8 7.5 23 4.9 0.3 2.5 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Claudin_2 PF13903.6 gi|330507710|ref|YP_004384138.1| - 8.6 6.1 11.7 0.12 12.1 3.4 1.9 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction GTP_EFTU PF00009.27 gi|330507711|ref|YP_004384139.1| - 3.9e-33 114.6 0.0 3.6e-32 111.5 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|330507711|ref|YP_004384139.1| - 5.2e-31 106.4 6.2 5.4e-31 106.3 3.5 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|330507711|ref|YP_004384139.1| - 2.3e-20 72.7 1.0 1.2e-19 70.3 0.2 2.3 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|330507711|ref|YP_004384139.1| - 5.8e-10 39.4 4.4 3.5e-07 30.5 0.0 3.2 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|330507711|ref|YP_004384139.1| - 6.4e-07 29.4 0.0 1.8e-06 28.0 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|330507711|ref|YP_004384139.1| - 0.007 16.2 0.0 0.027 14.2 0.0 1.8 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|330507711|ref|YP_004384139.1| - 0.058 13.4 0.1 0.5 10.4 0.0 2.3 2 0 0 2 2 2 0 Dynamin family RsgA_GTPase PF03193.16 gi|330507711|ref|YP_004384139.1| - 0.14 12.0 1.2 1.1 9.2 0.2 2.7 1 1 1 2 2 2 0 RsgA GTPase PduV-EutP PF10662.9 gi|330507711|ref|YP_004384139.1| - 0.16 11.7 0.0 0.78 9.5 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NDK PF00334.19 gi|330507712|ref|YP_004384140.1| - 9.9e-52 174.5 0.0 1.1e-51 174.4 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|330507713|ref|YP_004384141.1| - 5.9e-19 68.1 1.8 6.4e-19 67.9 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e YHS PF04945.13 gi|330507713|ref|YP_004384141.1| - 0.00011 22.2 0.5 0.00015 21.8 0.5 1.1 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|330507713|ref|YP_004384141.1| - 0.00096 19.0 2.7 0.0013 18.6 2.7 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif SerH PF06873.11 gi|330507713|ref|YP_004384141.1| - 0.0015 17.5 0.1 0.0015 17.5 0.1 1.0 1 0 0 1 1 1 1 Cell surface immobilisation antigen SerH DUF3268 PF11672.8 gi|330507713|ref|YP_004384141.1| - 0.034 14.5 0.2 0.037 14.3 0.2 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain Ta0938 PF11494.8 gi|330507713|ref|YP_004384141.1| - 0.043 14.1 0.5 0.047 14.0 0.5 1.1 1 0 0 1 1 1 0 Ta0938 Ras PF00071.22 gi|330507713|ref|YP_004384141.1| - 0.048 13.3 0.0 0.049 13.2 0.0 1.0 1 0 0 1 1 1 0 Ras family zf-FLZ PF04570.14 gi|330507713|ref|YP_004384141.1| - 0.087 12.3 3.7 0.21 11.1 3.7 1.6 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 VATC PF18716.1 gi|330507713|ref|YP_004384141.1| - 0.11 12.4 4.5 0.25 11.2 4.5 1.6 1 1 0 1 1 1 0 Vms1-associating treble clef domain zf-C2H2_10 PF16588.5 gi|330507713|ref|YP_004384141.1| - 0.19 11.5 1.0 0.19 11.5 1.0 2.2 3 0 0 3 3 3 0 C2H2 zinc-finger Ribosomal_S28e PF01200.18 gi|330507714|ref|YP_004384142.1| - 3.2e-29 100.7 0.6 3.5e-29 100.6 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|330507715|ref|YP_004384143.1| - 2.4e-25 88.1 0.4 2.8e-25 87.9 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|330507715|ref|YP_004384143.1| - 1.8e-05 24.5 0.1 2.4e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain Pterin_bind PF00809.22 gi|330507717|ref|YP_004384145.1| - 6.6e-09 35.8 0.1 1.4e-08 34.7 0.1 1.6 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.6 gi|330507717|ref|YP_004384145.1| - 7.2e-09 35.7 0.0 1.5e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) PEP_mutase PF13714.6 gi|330507717|ref|YP_004384145.1| - 0.0065 16.0 0.5 0.17 11.3 0.0 2.6 3 0 0 3 3 3 1 Phosphoenolpyruvate phosphomutase DUF561 PF04481.12 gi|330507717|ref|YP_004384145.1| - 0.069 12.3 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) DUF473 PF04322.12 gi|330507718|ref|YP_004384146.1| - 4.9e-31 107.0 0.0 5.4e-31 106.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.9 gi|330507719|ref|YP_004384147.1| - 2.3e-48 165.0 0.1 2.6e-48 164.8 0.1 1.0 1 0 0 1 1 1 1 PAC2 family ATP-grasp_5 PF13549.6 gi|330507720|ref|YP_004384148.1| - 3.3e-74 249.1 0.1 6.8e-74 248.1 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|330507720|ref|YP_004384148.1| - 2.4e-44 150.5 0.2 1.3e-43 148.1 0.3 2.2 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|330507720|ref|YP_004384148.1| - 2.2e-21 76.5 0.1 8.2e-21 74.7 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|330507720|ref|YP_004384148.1| - 3.4e-14 53.3 0.1 1.3e-13 51.4 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|330507720|ref|YP_004384148.1| - 5.4e-06 26.1 0.0 1e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GFO_IDH_MocA PF01408.22 gi|330507720|ref|YP_004384148.1| - 0.012 16.4 0.1 0.091 13.6 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold TrbH PF07283.11 gi|330507721|ref|YP_004384149.1| - 0.056 13.6 0.1 0.082 13.1 0.1 1.4 1 1 0 1 1 1 0 Conjugal transfer protein TrbH SRP54 PF00448.22 gi|330507723|ref|YP_004384151.1| - 1.5e-68 230.3 4.3 1.5e-68 230.3 4.3 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|330507723|ref|YP_004384151.1| - 3.8e-27 94.8 1.9 3.8e-27 94.8 1.9 2.5 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|330507723|ref|YP_004384151.1| - 3e-21 75.4 0.5 1.1e-20 73.6 0.3 2.2 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|330507723|ref|YP_004384151.1| - 8.7e-08 32.3 0.0 4.4e-07 30.0 0.0 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|330507723|ref|YP_004384151.1| - 2e-05 24.3 2.4 0.00023 20.8 2.4 2.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|330507723|ref|YP_004384151.1| - 0.00076 19.5 0.9 0.0095 16.0 0.9 2.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase MeaB PF03308.16 gi|330507723|ref|YP_004384151.1| - 0.0011 18.0 0.2 0.003 16.6 0.2 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB APS_kinase PF01583.20 gi|330507723|ref|YP_004384151.1| - 0.0013 18.6 0.1 0.0033 17.4 0.1 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.6 gi|330507723|ref|YP_004384151.1| - 0.002 18.5 0.4 0.0061 17.0 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|330507723|ref|YP_004384151.1| - 0.003 17.7 0.0 0.0067 16.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|330507723|ref|YP_004384151.1| - 0.0031 18.0 0.0 0.01 16.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|330507723|ref|YP_004384151.1| - 0.0038 17.0 1.2 0.012 15.4 0.9 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|330507723|ref|YP_004384151.1| - 0.0041 17.4 0.0 0.014 15.7 0.0 2.0 2 0 0 2 2 1 1 AAA domain MobB PF03205.14 gi|330507723|ref|YP_004384151.1| - 0.0045 16.9 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 gi|330507723|ref|YP_004384151.1| - 0.0046 16.3 0.0 0.011 15.0 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_8 PF12780.7 gi|330507723|ref|YP_004384151.1| - 0.0056 16.0 0.2 0.047 13.0 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region D4 6PF2K PF01591.18 gi|330507723|ref|YP_004384151.1| - 0.0058 16.0 0.0 0.012 14.9 0.0 1.5 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_24 PF13479.6 gi|330507723|ref|YP_004384151.1| - 0.0083 15.9 0.1 0.022 14.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_31 PF13614.6 gi|330507723|ref|YP_004384151.1| - 0.014 15.3 0.2 0.06 13.3 0.2 2.1 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|330507723|ref|YP_004384151.1| - 0.015 14.9 0.1 0.22 11.2 0.1 2.6 2 0 0 2 2 2 0 Thymidylate kinase SRPRB PF09439.10 gi|330507723|ref|YP_004384151.1| - 0.02 14.3 0.2 1 8.8 0.1 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit TrwB_AAD_bind PF10412.9 gi|330507723|ref|YP_004384151.1| - 0.024 13.6 0.1 0.054 12.4 0.1 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_15 PF13175.6 gi|330507723|ref|YP_004384151.1| - 0.027 14.2 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.10 gi|330507723|ref|YP_004384151.1| - 0.029 13.8 0.0 0.076 12.4 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|330507723|ref|YP_004384151.1| - 0.039 14.2 0.6 0.22 11.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|330507723|ref|YP_004384151.1| - 0.045 13.7 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 gi|330507723|ref|YP_004384151.1| - 0.07 12.3 0.1 0.15 11.1 0.1 1.8 1 1 0 1 1 1 0 G-protein alpha subunit ResIII PF04851.15 gi|330507723|ref|YP_004384151.1| - 0.072 13.1 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|330507723|ref|YP_004384151.1| - 0.074 13.4 0.6 0.26 11.6 0.1 2.1 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|330507723|ref|YP_004384151.1| - 0.095 12.6 0.2 0.42 10.5 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA PF00004.29 gi|330507723|ref|YP_004384151.1| - 0.11 12.9 1.4 1 9.8 0.7 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.9 gi|330507723|ref|YP_004384151.1| - 0.13 12.0 1.0 2.3 8.0 0.1 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.6 gi|330507723|ref|YP_004384151.1| - 3 8.3 5.6 2.2 8.7 0.8 3.2 3 1 0 3 3 3 0 AAA domain Peptidase_C1 PF00112.23 gi|330507725|ref|YP_004384153.1| - 2.7e-36 125.7 0.0 3.6e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 Papain family cysteine protease Mre11_DNA_bind PF04152.14 gi|330507727|ref|YP_004384155.1| - 0.012 15.9 0.0 0.012 15.9 0.0 1.1 1 0 0 1 1 1 0 Mre11 DNA-binding presumed domain NTP_transf_3 PF12804.7 gi|330507728|ref|YP_004384156.1| - 6.1e-17 62.4 0.0 7.3e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|330507728|ref|YP_004384156.1| - 1.8e-06 28.0 0.0 1.2e-05 25.3 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|330507728|ref|YP_004384156.1| - 0.00063 19.4 0.0 0.00093 18.8 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.16 gi|330507728|ref|YP_004384156.1| - 0.006 15.8 0.2 0.013 14.7 0.0 1.5 2 0 0 2 2 2 1 Guanylyl transferase CofC like CobS PF02654.15 gi|330507729|ref|YP_004384157.1| - 8.8e-40 137.1 20.2 1e-39 136.9 20.2 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase RseC_MucC PF04246.12 gi|330507729|ref|YP_004384157.1| - 0.013 15.4 4.3 0.013 15.4 4.3 2.9 3 1 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DUF3267 PF11667.8 gi|330507729|ref|YP_004384157.1| - 0.081 13.2 0.2 0.081 13.2 0.2 2.9 2 1 0 3 3 3 0 Putative zincin peptidase TMEM191C PF15194.6 gi|330507729|ref|YP_004384157.1| - 9.9 6.4 9.1 23 5.2 1.8 2.5 1 1 1 2 2 2 0 TMEM191C family PgpA PF04608.13 gi|330507730|ref|YP_004384158.1| - 1.6e-06 28.2 0.0 1.8e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A Nit_Regul_Hom PF10126.9 gi|330507731|ref|YP_004384159.1| - 2.7e-46 156.0 0.1 3e-46 155.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII HisG_C PF08029.11 gi|330507731|ref|YP_004384159.1| - 0.069 13.3 0.0 15 5.8 0.0 2.1 2 0 0 2 2 2 0 HisG, C-terminal domain Bcr-Abl_Oligo PF09036.10 gi|330507731|ref|YP_004384159.1| - 0.13 12.3 0.2 0.55 10.3 0.2 1.8 1 1 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain NifU PF01106.17 gi|330507732|ref|YP_004384160.1| - 3.2e-23 81.7 0.6 3.6e-23 81.5 0.6 1.0 1 0 0 1 1 1 1 NifU-like domain FeS_assembly_P PF01883.19 gi|330507732|ref|YP_004384160.1| - 0.0068 16.5 0.1 0.03 14.5 0.1 2.0 1 1 0 1 1 1 1 Iron-sulfur cluster assembly protein LSM PF01423.22 gi|330507733|ref|YP_004384161.1| - 2e-14 53.0 0.1 2.2e-14 52.9 0.1 1.0 1 0 0 1 1 1 1 LSM domain B-block_TFIIIC PF04182.12 gi|330507734|ref|YP_004384162.1| - 0.00056 20.0 0.0 0.00081 19.5 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|330507734|ref|YP_004384162.1| - 0.00094 19.0 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|330507734|ref|YP_004384162.1| - 0.097 12.6 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 MarR family SUI1 PF01253.22 gi|330507735|ref|YP_004384163.1| - 1.3e-22 80.0 2.5 1.8e-22 79.7 2.5 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|330507735|ref|YP_004384163.1| - 0.0027 18.0 0.6 0.0043 17.3 0.6 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|330507735|ref|YP_004384163.1| - 0.021 14.5 1.3 0.023 14.4 1.3 1.2 1 0 0 1 1 1 0 DTW domain VWA PF00092.28 gi|330507736|ref|YP_004384164.1| - 3.3e-11 43.7 0.0 6.1e-06 26.6 0.0 2.4 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_2 PF13519.6 gi|330507736|ref|YP_004384164.1| - 9.1e-11 42.4 0.0 2.5e-10 40.9 0.0 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain GATase1_like PF07090.11 gi|330507736|ref|YP_004384164.1| - 2.5e-10 40.2 0.0 0.00038 20.0 0.0 2.4 2 0 0 2 2 2 2 Putative glutamine amidotransferase Big_3_5 PF16640.5 gi|330507736|ref|YP_004384164.1| - 0.0029 17.8 0.1 0.031 14.5 0.0 2.8 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) Usp PF00582.26 gi|330507736|ref|YP_004384164.1| - 0.12 12.9 0.0 0.29 11.7 0.0 1.6 1 0 0 1 1 1 0 Universal stress protein family BatA PF07584.11 gi|330507737|ref|YP_004384165.1| - 5.5e-18 65.1 6.8 7e-18 64.8 1.6 2.3 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|330507737|ref|YP_004384165.1| - 0.00095 19.8 0.0 0.002 18.8 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain MFS_1 PF07690.16 gi|330507737|ref|YP_004384165.1| - 0.032 13.1 0.1 0.052 12.5 0.1 1.2 1 0 0 1 1 1 0 Major Facilitator Superfamily FeS PF04060.13 gi|330507738|ref|YP_004384166.1| - 2.8e-13 49.3 3.1 2.8e-13 49.3 3.1 2.5 3 0 0 3 3 2 1 Putative Fe-S cluster Fer4 PF00037.27 gi|330507738|ref|YP_004384166.1| - 8.2e-09 34.9 20.2 1.7e-07 30.7 4.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330507738|ref|YP_004384166.1| - 1.1e-08 35.5 13.8 2.1e-05 25.0 5.8 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330507738|ref|YP_004384166.1| - 4.2e-08 33.2 8.7 4.2e-08 33.2 8.7 2.8 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330507738|ref|YP_004384166.1| - 1.3e-06 28.4 12.1 0.00039 20.5 4.7 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330507738|ref|YP_004384166.1| - 1.8e-05 24.6 20.3 0.00011 22.1 3.2 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330507738|ref|YP_004384166.1| - 2.5e-05 24.4 20.2 9.3e-05 22.6 2.5 3.7 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330507738|ref|YP_004384166.1| - 3.4e-05 24.2 19.6 0.00067 20.1 6.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330507738|ref|YP_004384166.1| - 8.5e-05 22.4 16.8 0.00039 20.3 2.3 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330507738|ref|YP_004384166.1| - 0.00023 21.2 13.3 0.00037 20.5 1.0 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330507738|ref|YP_004384166.1| - 0.00059 20.3 10.9 0.0047 17.4 3.9 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330507738|ref|YP_004384166.1| - 0.0013 19.6 17.7 0.1 13.6 0.6 2.9 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|330507738|ref|YP_004384166.1| - 0.02 15.8 22.8 0.2 12.7 6.1 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Exonuc_VII_S PF02609.16 gi|330507738|ref|YP_004384166.1| - 0.064 13.3 0.7 0.13 12.4 0.0 1.8 2 0 0 2 2 2 0 Exonuclease VII small subunit LID PF17916.1 gi|330507738|ref|YP_004384166.1| - 0.089 12.5 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 LIM interaction domain (LID) Fer4_18 PF13746.6 gi|330507738|ref|YP_004384166.1| - 0.18 12.0 3.9 0.99 9.6 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330507738|ref|YP_004384166.1| - 4 8.0 12.7 0.76 10.4 1.7 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I TPP_enzyme_M PF00205.22 gi|330507739|ref|YP_004384167.1| - 0.0052 16.5 0.0 4.6 7.0 0.0 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain Molybdopterin PF00384.22 gi|330507739|ref|YP_004384167.1| - 0.071 12.1 0.0 1.5 7.7 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin oxidoreductase TRSP PF12500.8 gi|330507739|ref|YP_004384167.1| - 0.16 11.8 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 TRSP domain C terminus to PRTase_2 Molydop_binding PF01568.21 gi|330507740|ref|YP_004384168.1| - 3e-07 30.5 0.0 3.2e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain OTCace PF00185.24 gi|330507741|ref|YP_004384169.1| - 9.5e-53 178.5 0.0 1.2e-52 178.1 0.0 1.1 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|330507741|ref|YP_004384169.1| - 1.4e-47 161.4 0.0 2e-47 160.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Polbeta PF18765.1 gi|330507742|ref|YP_004384170.1| - 2.1e-11 43.7 0.0 3e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|330507742|ref|YP_004384170.1| - 2e-10 40.8 0.0 2.8e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Thg1 PF04446.12 gi|330507743|ref|YP_004384171.1| - 0.024 14.7 0.3 4 7.5 0.0 2.2 2 0 0 2 2 2 0 tRNAHis guanylyltransferase TPR_2 PF07719.17 gi|330507744|ref|YP_004384172.1| - 1.2e-20 71.9 0.5 0.0014 18.6 0.1 5.8 5 1 0 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330507744|ref|YP_004384172.1| - 2.5e-20 71.9 6.5 1.4e-07 31.1 0.0 5.0 5 0 0 5 5 5 4 TPR repeat TPR_17 PF13431.6 gi|330507744|ref|YP_004384172.1| - 3e-20 71.1 0.2 1.7e-06 28.0 0.0 4.8 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330507744|ref|YP_004384172.1| - 8.6e-20 69.7 4.2 0.0039 17.0 0.0 5.5 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330507744|ref|YP_004384172.1| - 7e-18 63.3 3.6 0.0024 17.9 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330507744|ref|YP_004384172.1| - 7.4e-12 45.0 0.0 0.00029 21.4 0.0 4.5 4 1 1 5 5 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330507744|ref|YP_004384172.1| - 1.7e-11 44.1 0.0 8e-05 22.7 0.0 2.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330507744|ref|YP_004384172.1| - 2.4e-10 40.7 0.0 2.8e-05 24.5 0.0 3.4 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330507744|ref|YP_004384172.1| - 3.1e-10 40.5 0.0 0.0026 18.4 0.0 3.3 2 1 1 3 3 3 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|330507744|ref|YP_004384172.1| - 2e-09 36.9 0.3 7.7e-05 21.8 0.0 3.0 2 1 1 3 3 3 2 NMDA receptor-regulated protein 1 ANAPC3 PF12895.7 gi|330507744|ref|YP_004384172.1| - 8.3e-07 29.1 0.0 8.2e-06 26.0 0.0 2.2 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|330507744|ref|YP_004384172.1| - 0.00019 21.5 0.0 0.024 14.7 0.0 3.6 3 1 1 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat TPR_12 PF13424.6 gi|330507744|ref|YP_004384172.1| - 0.0002 21.6 0.0 11 6.4 0.0 3.6 3 1 1 4 4 3 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330507744|ref|YP_004384172.1| - 0.0013 18.6 0.0 2.3 8.5 0.0 3.9 3 1 1 4 4 4 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|330507744|ref|YP_004384172.1| - 0.005 17.3 0.1 1.2 9.6 0.0 2.4 2 0 0 2 2 2 1 Alkyl sulfatase dimerisation SRP_TPR_like PF17004.5 gi|330507744|ref|YP_004384172.1| - 0.0063 16.5 0.2 0.013 15.5 0.2 1.5 1 0 0 1 1 1 1 Putative TPR-like repeat PPTA PF01239.22 gi|330507744|ref|YP_004384172.1| - 0.015 15.0 9.2 0.22 11.3 0.0 3.8 4 0 0 4 4 3 0 Protein prenyltransferase alpha subunit repeat ChAPs PF09295.10 gi|330507744|ref|YP_004384172.1| - 0.031 13.3 0.1 0.22 10.5 0.0 2.0 2 0 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) HrpB1_HrpK PF09613.10 gi|330507744|ref|YP_004384172.1| - 0.053 13.2 0.0 0.23 11.1 0.0 1.9 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) RepC PF06504.11 gi|330507745|ref|YP_004384173.1| - 0.00018 20.8 0.2 0.00021 20.6 0.2 1.1 1 0 0 1 1 1 1 Replication protein C (RepC) DUF445 PF04286.12 gi|330507745|ref|YP_004384173.1| - 0.0033 17.3 0.4 0.0039 17.1 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF445) Phage_integrase PF00589.22 gi|330507746|ref|YP_004384174.1| - 4.1e-09 36.5 0.0 7e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|330507746|ref|YP_004384174.1| - 8e-07 29.5 0.1 2.2e-06 28.0 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|330507746|ref|YP_004384174.1| - 0.0026 18.0 0.5 0.0095 16.2 0.5 1.9 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DDE_Tnp_1 PF01609.21 gi|330507747|ref|YP_004384175.1| - 2e-19 70.1 0.0 4.7e-19 68.9 0.0 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_ISAZ013 PF07592.11 gi|330507748|ref|YP_004384176.1| - 5.3e-141 469.0 0.0 6.2e-141 468.8 0.0 1.0 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain HTH_Tnp_Tc3_2 PF01498.18 gi|330507748|ref|YP_004384176.1| - 1.3e-05 25.3 0.0 4.2e-05 23.7 0.0 1.8 1 0 0 1 1 1 1 Transposase HTH_21 PF13276.6 gi|330507748|ref|YP_004384176.1| - 0.0004 20.4 0.0 0.00094 19.3 0.0 1.6 1 0 0 1 1 1 1 HTH-like domain HTH_32 PF13565.6 gi|330507748|ref|YP_004384176.1| - 0.0011 19.5 0.0 0.003 18.2 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_12 PF08461.10 gi|330507748|ref|YP_004384176.1| - 0.0026 17.7 0.4 0.009 15.9 0.1 2.1 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain GSH-S_N PF02951.14 gi|330507748|ref|YP_004384176.1| - 0.009 16.1 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain UPF0236 PF06782.11 gi|330507748|ref|YP_004384176.1| - 0.014 14.0 0.0 0.023 13.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0236) HTH_33 PF13592.6 gi|330507748|ref|YP_004384176.1| - 0.017 14.8 0.4 0.061 13.0 0.2 2.0 2 1 1 3 3 3 0 Winged helix-turn helix DDE_Tnp_IS1 PF03400.13 gi|330507749|ref|YP_004384177.1| - 1.9e-07 31.5 0.2 9.4e-05 22.8 0.1 2.2 2 0 0 2 2 2 2 IS1 transposase rve_3 PF13683.6 gi|330507749|ref|YP_004384177.1| - 0.00085 19.1 0.2 0.0018 18.0 0.2 1.6 1 0 0 1 1 1 1 Integrase core domain CHAT PF12770.7 gi|330507751|ref|YP_004384179.1| - 1.4e-07 31.3 0.0 1.3e-06 28.0 0.0 2.0 1 1 0 1 1 1 1 CHAT domain Peptidase_C25 PF01364.18 gi|330507751|ref|YP_004384179.1| - 0.043 13.0 0.0 0.052 12.7 0.0 1.2 1 0 0 1 1 1 0 Peptidase family C25 PGM_PMM_IV PF00408.20 gi|330507751|ref|YP_004384179.1| - 0.096 12.9 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, C-terminal domain O-FucT PF10250.9 gi|330507752|ref|YP_004384180.1| - 0.02 14.6 0.1 0.022 14.5 0.1 1.1 1 0 0 1 1 1 0 GDP-fucose protein O-fucosyltransferase HicB_lk_antitox PF15919.5 gi|330507753|ref|YP_004384181.1| - 0.00024 21.2 0.0 0.00028 21.0 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Trypsin_2 PF13365.6 gi|330507754|ref|YP_004384182.1| - 5e-23 82.7 0.5 7.5e-23 82.1 0.5 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain TPR_1 PF00515.28 gi|330507754|ref|YP_004384182.1| - 3.6e-11 42.4 10.7 9.7e-07 28.4 0.1 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330507754|ref|YP_004384182.1| - 9.5e-11 41.0 8.9 1.2e-07 31.3 0.1 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330507754|ref|YP_004384182.1| - 9.7e-08 31.6 4.8 8.7e-05 22.4 0.1 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat Trypsin PF00089.26 gi|330507754|ref|YP_004384182.1| - 2.9e-07 30.5 0.9 1.5e-06 28.2 0.9 1.9 1 1 0 1 1 1 1 Trypsin TPR_17 PF13431.6 gi|330507754|ref|YP_004384182.1| - 0.00013 22.1 1.1 0.1 13.0 0.1 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330507754|ref|YP_004384182.1| - 0.001 19.3 2.3 45 4.4 0.3 2.2 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330507754|ref|YP_004384182.1| - 0.0022 17.7 2.1 0.0038 16.9 0.2 2.3 2 0 0 2 2 2 1 TPR repeat TPR_16 PF13432.6 gi|330507754|ref|YP_004384182.1| - 0.0061 17.2 0.3 0.01 16.5 0.3 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330507754|ref|YP_004384182.1| - 0.015 15.4 0.0 0.063 13.4 0.0 2.0 1 1 0 1 1 1 0 Tetratricopeptide repeat Peptidase_S46 PF10459.9 gi|330507754|ref|YP_004384182.1| - 0.016 13.8 1.0 0.28 9.8 0.3 2.1 2 0 0 2 2 2 0 Peptidase S46 Peptidase_S7 PF00949.21 gi|330507754|ref|YP_004384182.1| - 0.017 14.9 0.3 0.039 13.8 0.3 1.6 1 1 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease Peptidase_S29 PF02907.15 gi|330507754|ref|YP_004384182.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease TPR_19 PF14559.6 gi|330507754|ref|YP_004384182.1| - 0.1 13.2 0.1 0.5 10.9 0.1 2.0 1 1 0 2 2 2 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330507754|ref|YP_004384182.1| - 0.12 12.7 5.3 0.098 12.9 3.0 1.8 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 PIN PF01850.21 gi|330507756|ref|YP_004384184.1| - 3.8e-12 46.8 2.3 4.3e-12 46.6 2.3 1.0 1 0 0 1 1 1 1 PIN domain Mut7-C PF01927.16 gi|330507756|ref|YP_004384184.1| - 0.11 12.5 0.1 1.3 9.1 0.0 2.1 1 1 1 2 2 2 0 Mut7-C RNAse domain PIN_3 PF13470.6 gi|330507756|ref|YP_004384184.1| - 0.13 13.0 1.1 0.24 12.2 1.1 1.6 1 1 0 1 1 1 0 PIN domain Vault_4 PF17796.1 gi|330507757|ref|YP_004384185.1| - 0.013 15.5 1.4 0.21 11.7 0.1 2.0 1 1 1 2 2 2 0 Major Vault Protein repeat domain Kinesin_assoc PF16183.5 gi|330507757|ref|YP_004384185.1| - 0.071 13.3 1.8 0.073 13.2 1.8 1.0 1 0 0 1 1 1 0 Kinesin-associated Isochorismatase PF00857.20 gi|330507758|ref|YP_004384186.1| - 5.3e-27 95.1 0.1 6.6e-27 94.8 0.1 1.1 1 0 0 1 1 1 1 Isochorismatase family Sigma70_r1_1 PF03979.14 gi|330507758|ref|YP_004384186.1| - 0.1 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 AhpC-TSA PF00578.21 gi|330507759|ref|YP_004384187.1| - 3.4e-32 111.0 0.0 4.5e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|330507759|ref|YP_004384187.1| - 4.5e-17 62.1 0.0 6.3e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|330507759|ref|YP_004384187.1| - 1.1e-06 28.3 1.1 2.8e-06 27.1 1.1 1.7 1 1 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF2375 PF09558.10 gi|330507759|ref|YP_004384187.1| - 0.13 12.2 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2375) AhpC-TSA_2 PF13911.6 gi|330507759|ref|YP_004384187.1| - 0.18 11.9 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme ParE_toxin PF05016.15 gi|330507760|ref|YP_004384188.1| - 4.3e-07 30.5 0.0 6.9e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|330507760|ref|YP_004384188.1| - 7.5e-07 29.0 0.3 2.8e-06 27.2 0.1 1.8 2 0 0 2 2 2 1 ParE-like toxin of type II bacterial toxin-antitoxin system YafQ_toxin PF15738.5 gi|330507760|ref|YP_004384188.1| - 0.00059 20.1 0.0 0.001 19.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ E1-E2_ATPase PF00122.20 gi|330507762|ref|YP_004384190.1| - 4.9e-44 150.0 0.3 4.9e-44 150.0 0.3 3.0 3 1 1 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|330507762|ref|YP_004384190.1| - 2.6e-34 118.5 7.2 5.7e-34 117.4 7.2 1.6 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|330507762|ref|YP_004384190.1| - 1.9e-28 100.2 0.0 4e-28 99.1 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|330507762|ref|YP_004384190.1| - 2.4e-10 39.9 0.0 7.3e-10 38.4 0.0 1.9 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|330507762|ref|YP_004384190.1| - 4.9e-07 29.7 0.3 0.0001 22.1 0.3 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|330507762|ref|YP_004384190.1| - 1.6e-06 28.1 0.0 3.4e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) HAD PF12710.7 gi|330507762|ref|YP_004384190.1| - 0.00025 21.5 0.0 0.00063 20.2 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PhoR PF11808.8 gi|330507762|ref|YP_004384190.1| - 0.055 13.9 0.0 0.055 13.9 0.0 3.6 4 1 0 4 4 4 0 Phosphate regulon sensor protein PhoR SnoaL PF07366.12 gi|330507763|ref|YP_004384191.1| - 1.3e-35 121.9 0.0 1.5e-35 121.7 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|330507763|ref|YP_004384191.1| - 6.2e-20 71.7 0.0 7.3e-20 71.5 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain TPR_1 PF00515.28 gi|330507764|ref|YP_004384192.1| - 3.5e-38 127.9 0.2 2.4e-08 33.5 0.1 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330507764|ref|YP_004384192.1| - 2.3e-36 120.9 0.3 2.1e-07 30.5 0.0 6.4 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330507764|ref|YP_004384192.1| - 8.8e-30 100.4 4.3 1e-06 28.5 0.0 6.4 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330507764|ref|YP_004384192.1| - 1.6e-28 98.1 5.0 1e-05 25.1 0.2 5.7 3 3 2 5 5 5 5 TPR repeat TPR_17 PF13431.6 gi|330507764|ref|YP_004384192.1| - 8e-27 91.7 0.2 0.00013 22.1 0.0 5.5 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330507764|ref|YP_004384192.1| - 3.8e-22 78.6 0.0 1.1e-07 32.4 0.1 3.4 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330507764|ref|YP_004384192.1| - 1.6e-18 66.8 2.7 2.8e-08 33.9 0.1 4.7 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330507764|ref|YP_004384192.1| - 2.9e-18 66.1 0.0 2.2e-05 24.8 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330507764|ref|YP_004384192.1| - 9e-15 54.1 0.7 0.11 13.4 0.0 6.0 2 2 4 6 6 6 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330507764|ref|YP_004384192.1| - 1.6e-11 44.2 0.0 0.0082 16.3 0.0 3.7 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330507764|ref|YP_004384192.1| - 2.1e-10 39.9 2.1 0.0029 17.5 0.0 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330507764|ref|YP_004384192.1| - 6.2e-10 39.2 0.1 0.0054 16.9 0.0 3.3 3 0 0 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|330507764|ref|YP_004384192.1| - 1.2e-09 38.2 1.7 0.06 14.0 0.0 4.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330507764|ref|YP_004384192.1| - 1.6e-09 37.3 3.9 0.042 13.7 0.1 4.9 5 1 0 5 5 5 2 Tetratricopeptide repeat BTAD PF03704.17 gi|330507764|ref|YP_004384192.1| - 5.9e-08 33.3 0.0 0.0089 16.5 0.0 3.0 2 1 1 3 3 3 2 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|330507764|ref|YP_004384192.1| - 9.7e-08 32.2 0.3 1.6 8.8 0.0 4.8 1 1 2 4 4 4 3 Domain of Unknown Function (DUF3856) TPR_4 PF07721.14 gi|330507764|ref|YP_004384192.1| - 3.7e-05 24.0 0.5 5.3 8.0 0.0 3.9 4 0 0 4 4 3 1 Tetratricopeptide repeat MIT PF04212.18 gi|330507764|ref|YP_004384192.1| - 0.00013 21.9 2.2 3 8.0 0.0 4.2 4 0 0 4 4 4 1 MIT (microtubule interacting and transport) domain TPR_15 PF13429.6 gi|330507764|ref|YP_004384192.1| - 0.0084 15.3 1.1 0.1 11.8 0.7 2.3 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_3 PF07720.12 gi|330507764|ref|YP_004384192.1| - 0.017 15.1 0.5 2.6 8.2 0.0 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat NRBF2_MIT PF17169.4 gi|330507764|ref|YP_004384192.1| - 0.049 13.9 0.0 3.5 7.9 0.0 2.9 3 0 0 3 3 3 0 MIT domain of nuclear receptor-binding factor 2 NARP1 PF12569.8 gi|330507764|ref|YP_004384192.1| - 0.071 12.0 0.2 9.4 5.0 0.0 2.4 2 1 0 2 2 2 0 NMDA receptor-regulated protein 1 PPR PF01535.20 gi|330507764|ref|YP_004384192.1| - 0.099 12.9 0.3 45 4.6 0.1 4.2 5 0 0 5 5 4 0 PPR repeat SHNi-TPR PF10516.9 gi|330507764|ref|YP_004384192.1| - 0.3 10.6 2.4 8.3 6.0 0.0 3.6 5 0 0 5 5 5 0 SHNi-TPR UPF0051 PF01458.17 gi|330507765|ref|YP_004384193.1| - 4.2e-48 163.9 0.0 5.5e-48 163.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|330507766|ref|YP_004384194.1| - 2.1e-24 86.6 0.0 3.4e-24 85.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330507766|ref|YP_004384194.1| - 4.4e-09 36.6 0.7 0.0018 18.2 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|330507766|ref|YP_004384194.1| - 0.00076 20.0 1.1 0.003 18.1 0.6 2.0 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|330507766|ref|YP_004384194.1| - 0.00096 18.6 1.3 0.87 9.0 0.1 2.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|330507766|ref|YP_004384194.1| - 0.0014 18.6 0.0 0.0022 17.9 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|330507766|ref|YP_004384194.1| - 0.0068 16.8 0.3 0.024 15.1 0.3 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|330507766|ref|YP_004384194.1| - 0.0075 16.0 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|330507766|ref|YP_004384194.1| - 0.026 13.2 0.0 0.044 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|330507766|ref|YP_004384194.1| - 0.039 13.5 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|330507766|ref|YP_004384194.1| - 0.048 13.4 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|330507766|ref|YP_004384194.1| - 0.054 13.9 0.0 0.077 13.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|330507766|ref|YP_004384194.1| - 0.082 12.6 0.1 0.13 12.0 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|330507766|ref|YP_004384194.1| - 0.093 13.0 0.3 0.46 10.8 0.3 2.1 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|330507766|ref|YP_004384194.1| - 0.1 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|330507766|ref|YP_004384194.1| - 0.13 12.8 0.0 5.4 7.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|330507766|ref|YP_004384194.1| - 0.15 12.3 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|330507766|ref|YP_004384194.1| - 0.15 12.0 0.1 1.1 9.1 0.0 2.0 2 0 0 2 2 2 0 NACHT domain DLIC PF05783.11 gi|330507766|ref|YP_004384194.1| - 0.2 10.5 0.0 0.27 10.0 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Orn_Arg_deC_N PF02784.16 gi|330507768|ref|YP_004384196.1| - 1.9e-55 187.9 0.0 2.5e-55 187.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|330507768|ref|YP_004384196.1| - 3.5e-24 84.9 0.0 4e-24 84.7 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|330507768|ref|YP_004384196.1| - 4e-13 49.5 0.0 5.7e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain TM_helix PF05552.12 gi|330507769|ref|YP_004384197.1| - 2.6e-49 165.0 55.1 2.5e-16 59.4 2.9 6.8 7 0 0 7 7 7 5 Conserved TM helix 7tm_1 PF00001.21 gi|330507769|ref|YP_004384197.1| - 0.093 12.0 3.0 0.88 8.8 3.0 2.4 1 1 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) Colicin_V PF02674.16 gi|330507769|ref|YP_004384197.1| - 9 6.3 61.8 0.47 10.4 0.7 7.1 2 2 4 6 6 6 0 Colicin V production protein DDE_3 PF13358.6 gi|330507773|ref|YP_004384201.1| - 1.4e-31 109.2 0.0 1.9e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease rve_2 PF13333.6 gi|330507773|ref|YP_004384201.1| - 0.063 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain rve_3 PF13683.6 gi|330507773|ref|YP_004384201.1| - 0.11 12.3 0.3 2.3 8.1 0.0 2.5 3 0 0 3 3 3 0 Integrase core domain TPR_1 PF00515.28 gi|330507774|ref|YP_004384202.1| - 7.1e-138 443.4 49.3 8.5e-13 47.5 0.2 12.0 12 0 0 12 12 12 12 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330507774|ref|YP_004384202.1| - 6.3e-110 350.7 42.3 1.9e-09 36.9 0.1 12.0 12 0 0 12 12 12 12 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330507774|ref|YP_004384202.1| - 3.3e-102 333.9 72.4 6.5e-13 48.1 3.7 12.0 3 3 9 12 12 12 12 TPR repeat TPR_8 PF13181.6 gi|330507774|ref|YP_004384202.1| - 4.2e-98 313.5 42.6 1.2e-08 34.4 0.1 12.1 12 0 0 12 12 12 12 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330507774|ref|YP_004384202.1| - 1e-79 257.3 34.3 8.4e-07 28.9 0.0 11.4 12 0 0 12 12 11 11 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330507774|ref|YP_004384202.1| - 4.7e-72 232.5 24.7 2.6e-06 27.8 0.0 12.1 1 1 11 12 12 12 12 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330507774|ref|YP_004384202.1| - 1.2e-69 230.6 25.1 2.5e-13 50.4 0.1 7.2 4 3 2 7 7 7 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330507774|ref|YP_004384202.1| - 9.3e-58 192.7 32.7 4.7e-10 39.8 0.3 7.3 5 3 2 7 7 7 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330507774|ref|YP_004384202.1| - 1e-54 182.7 25.6 1.3e-08 35.0 0.3 9.7 2 2 5 7 7 7 6 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330507774|ref|YP_004384202.1| - 3.9e-43 142.3 14.9 0.0019 18.1 0.1 12.1 12 0 0 12 12 12 11 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330507774|ref|YP_004384202.1| - 8e-41 138.2 19.1 1.4e-07 31.6 0.3 6.3 1 1 5 6 6 6 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|330507774|ref|YP_004384202.1| - 1.1e-40 137.6 5.1 2e-05 24.7 1.2 7.3 1 1 5 8 8 8 8 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330507774|ref|YP_004384202.1| - 3.4e-38 128.5 27.2 0.0076 16.1 0.1 12.1 12 0 0 12 12 12 10 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330507774|ref|YP_004384202.1| - 5.8e-36 120.8 23.3 0.027 15.1 0.3 12.1 11 1 1 12 12 12 9 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330507774|ref|YP_004384202.1| - 1.4e-25 89.1 14.3 0.061 13.4 0.0 11.2 9 3 3 12 12 11 5 Fis1 C-terminal tetratricopeptide repeat DUF3856 PF12968.7 gi|330507774|ref|YP_004384202.1| - 4e-23 82.1 16.9 0.011 15.8 0.2 11.5 1 1 6 8 8 8 6 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|330507774|ref|YP_004384202.1| - 4.5e-21 75.4 13.6 0.0012 17.9 0.1 5.8 1 1 4 6 6 6 6 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|330507774|ref|YP_004384202.1| - 2e-20 73.7 0.4 0.024 15.1 0.0 6.0 3 1 3 6 6 6 4 Bacterial transcriptional activator domain TPR_4 PF07721.14 gi|330507774|ref|YP_004384202.1| - 8.7e-20 69.3 7.9 0.15 12.7 0.3 11.4 12 0 0 12 12 11 1 Tetratricopeptide repeat TPR_3 PF07720.12 gi|330507774|ref|YP_004384202.1| - 8.2e-18 64.0 32.8 0.014 15.4 0.1 12.4 13 0 0 13 13 12 4 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|330507774|ref|YP_004384202.1| - 2e-17 63.3 2.6 0.021 14.8 0.0 6.7 1 1 4 5 5 5 5 Putative TPR-like repeat TPR_21 PF09976.9 gi|330507774|ref|YP_004384202.1| - 8.3e-14 51.7 26.3 0.013 15.2 0.4 7.4 3 1 4 8 8 8 5 Tetratricopeptide repeat-like domain ANAPC5 PF12862.7 gi|330507774|ref|YP_004384202.1| - 2.4e-13 50.0 3.8 3.7 7.7 0.0 10.5 2 2 9 11 11 11 0 Anaphase-promoting complex subunit 5 DUF627 PF04781.12 gi|330507774|ref|YP_004384202.1| - 1.8e-11 44.0 0.0 2.3 8.2 0.0 5.5 5 0 0 5 5 5 1 Protein of unknown function (DUF627) Lambda_Kil PF06301.11 gi|330507774|ref|YP_004384202.1| - 1.5e-10 40.5 2.2 1.1 9.0 0.0 8.8 11 0 0 11 11 11 1 Bacteriophage lambda Kil protein MIT PF04212.18 gi|330507774|ref|YP_004384202.1| - 9.6e-09 35.2 41.6 2 8.5 0.2 11.9 9 3 2 12 12 12 1 MIT (microtubule interacting and transport) domain NRBF2_MIT PF17169.4 gi|330507774|ref|YP_004384202.1| - 1.4e-08 34.8 19.8 2.1 8.6 0.1 10.6 2 2 9 11 11 11 1 MIT domain of nuclear receptor-binding factor 2 PPR PF01535.20 gi|330507774|ref|YP_004384202.1| - 3e-08 33.4 1.7 46 4.6 0.0 10.4 12 0 0 12 12 11 0 PPR repeat HTH_Bact PF18768.1 gi|330507774|ref|YP_004384202.1| - 2.7e-07 30.0 31.4 18 5.0 0.2 11.6 11 1 0 11 11 11 0 Helix-turn-helix bacterial domain Mo-co_dimer PF03404.16 gi|330507774|ref|YP_004384202.1| - 5.2e-07 29.8 7.0 11 6.1 0.0 7.9 1 1 5 8 8 8 0 Mo-co oxidoreductase dimerisation domain TPR_MalT PF17874.1 gi|330507774|ref|YP_004384202.1| - 2.4e-06 27.2 2.2 0.87 8.9 0.0 4.7 1 1 2 4 4 4 1 MalT-like TPR region Coatomer_E PF04733.14 gi|330507774|ref|YP_004384202.1| - 2.8e-06 27.0 0.0 5 6.4 0.0 5.2 1 1 3 6 6 6 0 Coatomer epsilon subunit DUF982 PF06169.12 gi|330507774|ref|YP_004384202.1| - 7.1e-06 26.0 11.0 17 5.5 0.0 7.3 8 1 1 9 9 7 0 Protein of unknown function (DUF982) DUF5113 PF17140.4 gi|330507774|ref|YP_004384202.1| - 7.5e-06 25.8 17.7 2.7 7.8 0.0 8.8 2 2 7 10 10 10 1 Domain of unknown function (DUF5113) Wzy_C_2 PF11846.8 gi|330507774|ref|YP_004384202.1| - 1.1e-05 25.5 24.2 0.77 9.6 0.2 8.5 2 2 5 8 8 8 2 Virulence factor membrane-bound polymerase, C-terminal TPR_15 PF13429.6 gi|330507774|ref|YP_004384202.1| - 1.8e-05 24.1 14.5 0.13 11.5 0.2 4.6 1 1 4 5 5 5 4 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|330507774|ref|YP_004384202.1| - 3.2e-05 24.4 4.9 29 5.1 0.0 6.0 2 2 2 6 6 6 0 Alkyl sulfatase dimerisation TetR_C_15 PF17918.1 gi|330507774|ref|YP_004384202.1| - 0.00025 21.7 0.0 11 6.8 0.0 5.2 5 1 1 6 6 6 0 Tetracyclin repressor-like, C-terminal domain FERM_C PF09380.10 gi|330507774|ref|YP_004384202.1| - 0.00039 20.7 1.2 24 5.4 0.0 6.0 2 2 5 7 7 6 0 FERM C-terminal PH-like domain FAT PF02259.23 gi|330507774|ref|YP_004384202.1| - 0.0005 19.4 18.2 2.4 7.3 0.1 6.7 1 1 4 8 8 8 1 FAT domain TPR_20 PF14561.6 gi|330507774|ref|YP_004384202.1| - 0.00087 19.6 12.3 10 6.5 1.3 5.7 3 2 3 6 6 6 0 Tetratricopeptide repeat SPOB_a PF14689.6 gi|330507774|ref|YP_004384202.1| - 0.00097 18.8 7.9 68 3.3 0.0 8.2 11 0 0 11 11 10 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF1510 PF07423.11 gi|330507774|ref|YP_004384202.1| - 0.007 16.5 11.9 61 3.9 0.0 7.6 3 2 5 9 9 9 0 Domain of unknown function (DUF1510) DNA_pol_lambd_f PF10391.9 gi|330507774|ref|YP_004384202.1| - 0.0079 16.0 8.8 30 4.5 0.0 6.3 6 0 0 6 6 6 0 Fingers domain of DNA polymerase lambda RPN7 PF10602.9 gi|330507774|ref|YP_004384202.1| - 0.012 15.4 16.9 8.1 6.1 0.1 7.7 3 3 6 10 10 10 0 26S proteasome subunit RPN7 Trm56 PF01994.16 gi|330507774|ref|YP_004384202.1| - 0.07 13.1 0.0 7 6.6 0.0 3.6 4 2 1 5 5 3 0 tRNA ribose 2'-O-methyltransferase, aTrm56 Vta1_C PF18097.1 gi|330507774|ref|YP_004384202.1| - 0.22 11.3 11.1 77 3.1 0.1 6.3 6 0 0 6 6 5 0 Vta1 C-terminal domain PHP PF02811.19 gi|330507774|ref|YP_004384202.1| - 0.22 11.8 2.4 24 5.2 0.1 3.5 2 1 1 3 3 3 0 PHP domain SpoVAC_SpoVAEB PF03862.13 gi|330507774|ref|YP_004384202.1| - 0.44 10.8 1.7 2.2e+02 2.1 0.0 4.9 6 0 0 6 6 3 0 SpoVAC/SpoVAEB sporulation membrane protein Lactamase_B PF00753.27 gi|330507775|ref|YP_004384203.1| - 9.8e-07 29.0 0.2 9.8e-07 29.0 0.2 1.3 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|330507775|ref|YP_004384203.1| - 0.0009 18.8 0.1 0.0011 18.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MMPL PF03176.15 gi|330507776|ref|YP_004384204.1| - 9.9e-44 149.6 21.0 6.1e-24 84.6 9.0 2.5 2 1 0 2 2 2 2 MMPL family ACR_tran PF00873.19 gi|330507776|ref|YP_004384204.1| - 3.1e-06 25.2 26.9 6.1e-06 24.2 5.0 2.4 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 gi|330507776|ref|YP_004384204.1| - 1.2e-05 24.8 5.3 1.2e-05 24.8 5.3 2.6 2 0 0 2 2 2 1 Protein export membrane protein NPCBM_assoc PF10633.9 gi|330507777|ref|YP_004384205.1| - 3.7e-07 30.3 0.0 0.044 14.0 0.0 3.6 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF2012 PF09430.10 gi|330507777|ref|YP_004384205.1| - 0.22 11.7 0.9 0.76 9.9 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2012) RDD PF06271.12 gi|330507778|ref|YP_004384206.1| - 1.3e-14 54.6 4.4 1.6e-14 54.3 4.4 1.1 1 0 0 1 1 1 1 RDD family Fer4_5 PF12801.7 gi|330507779|ref|YP_004384207.1| - 1.6e-13 50.4 12.5 1.3e-11 44.3 2.2 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330507779|ref|YP_004384207.1| - 3e-07 30.9 11.4 0.00016 22.2 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330507779|ref|YP_004384207.1| - 1.7e-05 24.9 15.1 5.6e-05 23.2 14.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330507779|ref|YP_004384207.1| - 0.00016 21.9 9.6 0.00016 21.9 9.6 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330507779|ref|YP_004384207.1| - 0.00019 21.1 22.4 0.0012 18.6 6.1 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330507779|ref|YP_004384207.1| - 0.00041 20.8 17.1 0.0061 17.1 4.6 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330507779|ref|YP_004384207.1| - 0.00065 20.0 20.8 0.11 13.1 1.7 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330507779|ref|YP_004384207.1| - 0.00097 19.2 17.3 0.0018 18.4 15.2 2.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330507779|ref|YP_004384207.1| - 0.022 15.7 14.9 0.59 11.1 4.0 3.0 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|330507779|ref|YP_004384207.1| - 0.039 14.0 2.3 0.039 14.0 2.3 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330507779|ref|YP_004384207.1| - 0.15 12.5 20.0 0.3 11.6 3.5 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330507779|ref|YP_004384207.1| - 0.21 11.7 19.8 1.8 8.7 4.5 3.1 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330507779|ref|YP_004384207.1| - 0.25 11.5 23.4 0.099 12.8 3.6 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Cupin_2 PF07883.11 gi|330507780|ref|YP_004384208.1| - 3e-13 49.3 0.1 4.2e-13 48.8 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|330507780|ref|YP_004384208.1| - 0.0095 15.8 0.0 0.011 15.6 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|330507780|ref|YP_004384208.1| - 0.054 13.4 0.1 0.065 13.1 0.1 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase NAD_binding_10 PF13460.6 gi|330507780|ref|YP_004384208.1| - 0.12 12.2 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 NAD(P)H-binding Na_H_Exchanger PF00999.21 gi|330507781|ref|YP_004384209.1| - 7.5e-60 202.7 52.3 9.6e-60 202.4 52.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|330507781|ref|YP_004384209.1| - 5.6e-22 78.2 0.1 1.4e-21 76.9 0.1 1.7 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|330507781|ref|YP_004384209.1| - 3.5e-14 52.4 0.0 3.2e-13 49.3 0.0 2.7 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_2 PF03446.15 gi|330507781|ref|YP_004384209.1| - 0.03 14.5 0.0 0.056 13.6 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Na_H_Exchanger PF00999.21 gi|330507782|ref|YP_004384210.1| - 4e-57 193.8 42.9 4.8e-57 193.5 42.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.21 gi|330507782|ref|YP_004384210.1| - 1.4e-10 40.9 0.1 2.5e-10 40.0 0.1 1.5 1 0 0 1 1 1 1 TrkA-C domain DUF4229 PF14012.6 gi|330507782|ref|YP_004384210.1| - 0.029 14.4 1.8 0.029 14.4 1.8 4.4 5 0 0 5 5 5 0 Protein of unknown function (DUF4229) Na_Ca_ex PF01699.24 gi|330507783|ref|YP_004384211.1| - 1.4e-50 171.2 33.6 3.6e-28 98.4 9.7 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein OrfB_IS605 PF01385.19 gi|330507784|ref|YP_004384212.1| - 9e-22 77.5 0.0 1.9e-21 76.5 0.0 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|330507784|ref|YP_004384212.1| - 1.5e-21 76.1 0.0 3.7e-21 74.8 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|330507784|ref|YP_004384212.1| - 2.5e-19 68.5 2.3 5.3e-19 67.4 2.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|330507784|ref|YP_004384212.1| - 0.0032 17.4 0.2 0.0057 16.7 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|330507784|ref|YP_004384212.1| - 0.064 12.7 0.6 0.83 9.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|330507784|ref|YP_004384212.1| - 0.082 12.7 0.1 2 8.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|330507784|ref|YP_004384212.1| - 0.1 12.1 0.3 2.8 7.5 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding RecR PF02132.15 gi|330507784|ref|YP_004384212.1| - 0.13 11.9 2.8 11 5.6 0.2 3.1 2 1 1 3 3 3 0 RecR protein zf-NADH-PPase PF09297.11 gi|330507784|ref|YP_004384212.1| - 0.2 11.3 0.7 0.42 10.3 0.7 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Radical_SAM PF04055.21 gi|330507785|ref|YP_004384213.1| - 3.1e-15 56.9 0.0 4.4e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily NERD PF08378.11 gi|330507786|ref|YP_004384214.1| - 0.041 14.4 0.1 0.073 13.5 0.1 1.5 1 1 0 1 1 1 0 Nuclease-related domain Catalase-rel PF06628.12 gi|330507787|ref|YP_004384215.1| - 0.024 14.9 0.0 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 Catalase-related immune-responsive N6_N4_Mtase PF01555.18 gi|330507788|ref|YP_004384216.1| - 3.8e-38 131.5 0.1 4.5e-38 131.2 0.1 1.0 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|330507788|ref|YP_004384216.1| - 0.041 13.6 0.1 13 5.4 0.0 2.6 3 0 0 3 3 3 0 Putative RNA methylase family UPF0020 N6_Mtase PF02384.16 gi|330507788|ref|YP_004384216.1| - 0.054 12.7 0.0 3.8 6.7 0.0 2.1 2 0 0 2 2 2 0 N-6 DNA Methylase PEMT PF04191.13 gi|330507789|ref|YP_004384217.1| - 1.9e-12 47.5 0.7 1.9e-12 47.5 0.7 2.3 3 0 0 3 3 3 1 Phospholipid methyltransferase ICMT PF04140.14 gi|330507789|ref|YP_004384217.1| - 1.7e-09 37.9 4.6 1.9e-09 37.8 0.8 2.4 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1345 PF07077.11 gi|330507789|ref|YP_004384217.1| - 0.016 14.9 1.6 0.016 14.9 1.6 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1345) ERG4_ERG24 PF01222.17 gi|330507789|ref|YP_004384217.1| - 0.017 13.9 0.3 0.017 13.9 0.3 2.2 1 1 1 2 2 2 0 Ergosterol biosynthesis ERG4/ERG24 family Holin_BhlA PF10960.8 gi|330507789|ref|YP_004384217.1| - 0.098 12.6 0.2 0.3 11.1 0.2 1.8 1 0 0 1 1 1 0 BhlA holin family WBP-1 PF11669.8 gi|330507789|ref|YP_004384217.1| - 0.15 12.7 0.1 0.15 12.7 0.1 1.7 2 0 0 2 2 2 0 WW domain-binding protein 1 Abhydrolase_9_N PF15420.6 gi|330507789|ref|YP_004384217.1| - 0.18 11.8 3.2 0.35 10.8 3.2 1.5 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus FA_desaturase PF00487.24 gi|330507789|ref|YP_004384217.1| - 2.2 8.1 17.2 1.4 8.7 5.6 2.1 1 1 1 2 2 2 0 Fatty acid desaturase LTD PF00932.19 gi|330507790|ref|YP_004384218.1| - 4.1e-17 62.6 0.1 8.3e-16 58.3 0.2 2.0 2 0 0 2 2 2 1 Lamin Tail Domain Lipase_GDSL_2 PF13472.6 gi|330507791|ref|YP_004384219.1| - 1.7e-29 103.5 0.0 2.1e-29 103.2 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|330507791|ref|YP_004384219.1| - 1.1e-18 68.0 0.0 1.3e-18 67.7 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.6 gi|330507791|ref|YP_004384219.1| - 0.0019 18.4 0.0 0.0032 17.6 0.0 1.4 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family OSK PF17182.4 gi|330507791|ref|YP_004384219.1| - 0.019 14.2 0.0 0.029 13.6 0.0 1.3 1 1 0 1 1 1 0 OSK domain Trp_syntA PF00290.20 gi|330507792|ref|YP_004384220.1| - 1.7e-78 263.1 0.0 2.1e-78 262.8 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|330507792|ref|YP_004384220.1| - 0.00064 19.3 0.2 0.0013 18.3 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.14 gi|330507792|ref|YP_004384220.1| - 0.026 13.7 0.1 0.095 11.9 0.1 1.9 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.17 gi|330507792|ref|YP_004384220.1| - 0.048 13.1 0.0 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 PcrB family Radical_SAM PF04055.21 gi|330507792|ref|YP_004384220.1| - 0.15 12.4 0.0 5.4 7.4 0.0 2.3 1 1 1 2 2 2 0 Radical SAM superfamily PALP PF00291.25 gi|330507793|ref|YP_004384221.1| - 1.8e-38 132.6 0.2 2.5e-38 132.2 0.2 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Exonuc_VII_S PF02609.16 gi|330507794|ref|YP_004384222.1| - 3.1e-18 65.6 5.1 4.6e-18 65.0 5.1 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit KxDL PF10241.9 gi|330507794|ref|YP_004384222.1| - 0.11 12.8 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein Exonuc_VII_L PF02601.15 gi|330507795|ref|YP_004384223.1| - 5.7e-79 265.8 0.0 2.9e-71 240.5 0.2 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|330507795|ref|YP_004384223.1| - 1e-26 92.9 0.0 1.8e-26 92.2 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|330507795|ref|YP_004384223.1| - 3.6e-06 26.9 0.0 1e-05 25.4 0.0 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DUF4539 PF15072.6 gi|330507795|ref|YP_004384223.1| - 0.004 17.2 0.0 0.0079 16.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4539) CbiM PF01891.16 gi|330507796|ref|YP_004384224.1| - 2.3e-54 184.4 21.5 2.6e-54 184.2 21.5 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF4231 PF14015.6 gi|330507796|ref|YP_004384224.1| - 0.17 12.4 0.3 0.17 12.4 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) CbiN PF02553.15 gi|330507797|ref|YP_004384225.1| - 1.9e-26 91.8 0.5 2.5e-26 91.5 0.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN PgpA PF04608.13 gi|330507797|ref|YP_004384225.1| - 0.12 12.3 0.2 0.13 12.2 0.2 1.2 1 1 0 1 1 1 0 Phosphatidylglycerophosphatase A PsbI PF02532.14 gi|330507797|ref|YP_004384225.1| - 0.38 10.7 1.2 0.58 10.1 1.2 1.3 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) CbiQ PF02361.16 gi|330507798|ref|YP_004384226.1| - 1.6e-36 126.0 12.7 2.3e-36 125.5 12.7 1.2 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|330507799|ref|YP_004384227.1| - 6.1e-31 107.8 0.0 1.3e-30 106.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|330507799|ref|YP_004384227.1| - 1.3e-16 61.3 0.1 2.7e-11 43.8 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330507799|ref|YP_004384227.1| - 1.7e-07 30.9 0.0 0.00063 19.2 0.0 2.3 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain MukB PF04310.12 gi|330507799|ref|YP_004384227.1| - 0.0013 18.6 0.0 0.0023 17.8 0.0 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA_29 PF13555.6 gi|330507799|ref|YP_004384227.1| - 0.0023 17.6 0.0 0.0054 16.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|330507799|ref|YP_004384227.1| - 0.0031 17.3 0.0 0.038 13.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|330507799|ref|YP_004384227.1| - 0.017 15.4 0.0 0.062 13.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|330507799|ref|YP_004384227.1| - 0.017 15.3 0.1 0.24 11.7 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|330507799|ref|YP_004384227.1| - 0.028 14.9 0.0 0.048 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|330507799|ref|YP_004384227.1| - 0.029 14.1 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|330507799|ref|YP_004384227.1| - 0.049 14.0 0.0 0.091 13.1 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|330507799|ref|YP_004384227.1| - 0.17 11.8 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AIRC PF00731.20 gi|330507800|ref|YP_004384228.1| - 8.1e-17 61.2 1.8 1.2e-16 60.6 1.8 1.3 1 0 0 1 1 1 1 AIR carboxylase VbhA PF18495.1 gi|330507800|ref|YP_004384228.1| - 0.0053 16.6 0.1 0.011 15.6 0.1 1.5 1 0 0 1 1 1 1 Antitoxin VbhA DUF2089 PF09862.9 gi|330507800|ref|YP_004384228.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) PHP PF02811.19 gi|330507801|ref|YP_004384229.1| - 8.7e-05 22.9 0.0 0.2 11.9 0.0 2.4 2 1 0 2 2 2 2 PHP domain PHP_C PF13263.6 gi|330507801|ref|YP_004384229.1| - 0.035 13.8 0.0 0.085 12.6 0.0 1.6 1 0 0 1 1 1 0 PHP-associated Tmemb_55A PF09788.9 gi|330507801|ref|YP_004384229.1| - 0.23 10.5 0.3 0.35 9.9 0.3 1.2 1 0 0 1 1 1 0 Transmembrane protein 55A Glycos_transf_2 PF00535.26 gi|330507803|ref|YP_004384231.1| - 3.9e-52 176.5 0.6 7.3e-28 97.5 0.1 2.4 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330507803|ref|YP_004384231.1| - 2.4e-27 96.3 0.0 1.6e-13 51.1 0.0 2.7 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|330507803|ref|YP_004384231.1| - 8.2e-20 71.4 5.1 3.2e-09 36.6 0.3 3.8 3 1 0 3 3 3 3 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|330507803|ref|YP_004384231.1| - 3.1e-11 43.6 0.1 6.6e-05 22.9 0.0 2.6 2 1 0 2 2 2 2 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.6 gi|330507803|ref|YP_004384231.1| - 3.8e-07 30.0 0.2 2.7e-06 27.2 0.0 2.3 2 0 0 2 2 2 1 Glycosyltransferase like family Glyco_transf_7C PF02709.14 gi|330507803|ref|YP_004384231.1| - 0.001 18.7 0.0 0.0068 16.0 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of galactosyltransferase Glyco_transf_21 PF13506.6 gi|330507803|ref|YP_004384231.1| - 0.0015 18.0 0.0 0.043 13.3 0.0 2.5 2 1 0 2 2 2 1 Glycosyl transferase family 21 GNT-I PF03071.15 gi|330507803|ref|YP_004384231.1| - 0.06 12.1 0.1 1.4 7.6 0.0 2.1 2 0 0 2 2 2 0 GNT-I family Glycos_transf_2 PF00535.26 gi|330507804|ref|YP_004384232.1| - 1.5e-45 155.1 1.5 2.2e-22 79.7 0.6 2.8 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330507804|ref|YP_004384232.1| - 3.5e-22 79.4 0.0 4.8e-12 46.3 0.0 2.6 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|330507804|ref|YP_004384232.1| - 5e-17 62.0 0.0 1.8e-16 60.1 0.0 2.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330507804|ref|YP_004384232.1| - 5e-13 49.7 0.0 1.2e-12 48.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_tranf_2_2 PF10111.9 gi|330507804|ref|YP_004384232.1| - 2.3e-11 43.7 10.0 6.9e-07 29.0 0.1 3.9 3 2 0 3 3 3 2 Glycosyltransferase like family 2 Methyltransf_11 PF08241.12 gi|330507804|ref|YP_004384232.1| - 5e-11 43.1 0.0 5.2e-09 36.6 0.0 3.2 3 0 0 3 3 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330507804|ref|YP_004384232.1| - 4.8e-08 32.6 0.0 1e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Glyco_tranf_2_5 PF13712.6 gi|330507804|ref|YP_004384232.1| - 3.2e-07 30.3 0.0 9.8e-07 28.7 0.0 1.8 2 0 0 2 2 1 1 Glycosyltransferase like family Glyco_trans_1_2 PF13524.6 gi|330507804|ref|YP_004384232.1| - 2.8e-06 27.6 0.0 1.2e-05 25.6 0.0 2.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_25 PF13649.6 gi|330507804|ref|YP_004384232.1| - 3.6e-06 27.6 0.0 0.00017 22.2 0.0 2.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330507804|ref|YP_004384232.1| - 9.6e-06 25.5 0.9 9.6e-05 22.2 0.0 2.7 3 0 0 3 3 3 1 Methyltransferase domain Glyco_trans_4_5 PF16994.5 gi|330507804|ref|YP_004384232.1| - 9.9e-05 22.0 0.0 0.0004 20.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl-transferase family 4 Methyltransf_12 PF08242.12 gi|330507804|ref|YP_004384232.1| - 0.0075 17.0 0.0 0.049 14.4 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|330507804|ref|YP_004384232.1| - 0.012 15.5 0.0 0.027 14.3 0.0 1.6 1 0 0 1 1 1 0 Hypothetical methyltransferase Glyco_trans_2_3 PF13632.6 gi|330507804|ref|YP_004384232.1| - 0.018 14.9 0.0 0.07 13.0 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferase family group 2 MetW PF07021.12 gi|330507804|ref|YP_004384232.1| - 0.1 12.2 0.0 0.26 10.8 0.0 1.7 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF1492 PF07374.11 gi|330507804|ref|YP_004384232.1| - 0.13 12.5 0.4 0.45 10.7 0.3 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1492) DUF5461 PF17545.2 gi|330507804|ref|YP_004384232.1| - 0.15 12.3 3.3 0.28 11.5 0.1 3.2 4 0 0 4 4 2 0 Family of unknown function (DUF5461) DUF4951 PF16309.5 gi|330507804|ref|YP_004384232.1| - 0.17 12.0 0.1 7.8 6.6 0.0 2.8 3 0 0 3 3 3 0 Domian of unknown function (DUF4951) PVL_ORF50 PF07768.11 gi|330507804|ref|YP_004384232.1| - 0.46 10.8 2.4 0.5 10.7 0.5 2.0 2 0 0 2 2 2 0 PVL ORF-50-like family PMT_2 PF13231.6 gi|330507805|ref|YP_004384233.1| - 4.1e-19 69.3 19.6 4.1e-19 69.3 19.6 3.2 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|330507805|ref|YP_004384233.1| - 3.6e-12 46.4 20.6 3.6e-12 46.4 20.6 2.5 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_2 PF00535.26 gi|330507806|ref|YP_004384234.1| - 7.8e-36 123.4 0.4 1.2e-35 122.8 0.4 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|330507806|ref|YP_004384234.1| - 1.4e-10 41.1 0.1 1.9e-10 40.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|330507806|ref|YP_004384234.1| - 3.1e-05 24.0 0.0 4.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|330507806|ref|YP_004384234.1| - 0.0025 17.3 0.0 0.013 15.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|330507806|ref|YP_004384234.1| - 0.016 15.7 0.1 0.028 14.9 0.1 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 GDP_Man_Dehyd PF16363.5 gi|330507807|ref|YP_004384235.1| - 2.9e-63 214.3 0.0 9.4e-63 212.6 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|330507807|ref|YP_004384235.1| - 5.4e-62 209.4 0.0 6.5e-62 209.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|330507807|ref|YP_004384235.1| - 1.7e-32 112.6 0.0 2.2e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|330507807|ref|YP_004384235.1| - 8.3e-20 71.1 0.0 5.7e-19 68.4 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|330507807|ref|YP_004384235.1| - 8.8e-15 54.5 0.0 1.3e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|330507807|ref|YP_004384235.1| - 1.3e-11 44.7 0.0 3e-11 43.5 0.0 1.6 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|330507807|ref|YP_004384235.1| - 1.1e-10 41.5 0.0 1.8e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.12 gi|330507807|ref|YP_004384235.1| - 2.6e-10 39.9 0.1 4e-09 36.0 0.1 2.5 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|330507807|ref|YP_004384235.1| - 6.1e-05 22.6 0.0 9.9e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|330507807|ref|YP_004384235.1| - 0.079 12.9 0.0 0.17 11.8 0.0 1.6 1 1 0 1 1 1 0 KR domain Methyltransf_31 PF13847.6 gi|330507808|ref|YP_004384236.1| - 1.7e-12 47.4 0.0 2.4e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330507808|ref|YP_004384236.1| - 3.6e-12 46.8 0.0 5.9e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330507808|ref|YP_004384236.1| - 1e-09 39.0 0.0 1.6e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507808|ref|YP_004384236.1| - 1.2e-09 38.7 0.0 1.9e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330507808|ref|YP_004384236.1| - 5.8e-09 36.0 0.0 7e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330507808|ref|YP_004384236.1| - 1e-06 28.4 0.0 1.5e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_5 PF01795.19 gi|330507808|ref|YP_004384236.1| - 0.00056 19.5 0.0 0.00082 19.0 0.0 1.2 1 0 0 1 1 1 1 MraW methylase family Methyltransf_15 PF09445.10 gi|330507808|ref|YP_004384236.1| - 0.0059 16.2 0.0 0.0079 15.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_2 PF00891.18 gi|330507808|ref|YP_004384236.1| - 0.016 14.5 0.0 0.02 14.2 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_4 PF02390.17 gi|330507808|ref|YP_004384236.1| - 0.02 14.4 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_3 PF01596.17 gi|330507808|ref|YP_004384236.1| - 0.047 12.9 0.0 0.074 12.2 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_32 PF13679.6 gi|330507808|ref|YP_004384236.1| - 0.071 13.1 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330507808|ref|YP_004384236.1| - 0.11 11.8 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family rve_3 PF13683.6 gi|330507809|ref|YP_004384237.1| - 0.029 14.2 0.0 0.032 14.0 0.0 1.1 1 0 0 1 1 1 0 Integrase core domain Methyltransf_31 PF13847.6 gi|330507810|ref|YP_004384238.1| - 1.9e-20 73.2 0.0 2.3e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507810|ref|YP_004384238.1| - 1.1e-19 70.9 0.2 1.5e-19 70.4 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330507810|ref|YP_004384238.1| - 1.4e-19 70.6 0.2 2.1e-19 70.0 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330507810|ref|YP_004384238.1| - 1.6e-15 57.3 0.0 2.7e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330507810|ref|YP_004384238.1| - 3.4e-15 56.6 0.3 5.4e-15 55.9 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330507810|ref|YP_004384238.1| - 4.7e-10 39.2 0.0 8.3e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|330507810|ref|YP_004384238.1| - 9.7e-10 38.2 0.0 1.4e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|330507810|ref|YP_004384238.1| - 3.5e-09 36.4 0.1 5e-09 35.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|330507810|ref|YP_004384238.1| - 1.6e-07 30.9 0.0 2.4e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|330507810|ref|YP_004384238.1| - 1.4e-06 28.0 0.0 2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|330507810|ref|YP_004384238.1| - 1.7e-06 28.1 0.0 2.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|330507810|ref|YP_004384238.1| - 4.1e-05 22.8 0.0 6.1e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase MetW PF07021.12 gi|330507810|ref|YP_004384238.1| - 0.00045 19.9 0.1 0.00069 19.3 0.1 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|330507810|ref|YP_004384238.1| - 0.00053 19.5 0.1 0.00076 19.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.15 gi|330507810|ref|YP_004384238.1| - 0.0006 19.7 0.1 0.012 15.4 0.1 2.6 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.11 gi|330507810|ref|YP_004384238.1| - 0.0012 17.8 0.0 0.0015 17.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) N2227 PF07942.12 gi|330507810|ref|YP_004384238.1| - 0.0016 17.7 0.0 0.0061 15.8 0.0 1.7 1 1 1 2 2 2 1 N2227-like protein MethyltransfD12 PF02086.15 gi|330507810|ref|YP_004384238.1| - 0.0077 15.9 0.1 0.014 15.1 0.0 1.4 2 0 0 2 2 1 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_18 PF12847.7 gi|330507810|ref|YP_004384238.1| - 0.014 15.4 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF43 PF01861.16 gi|330507810|ref|YP_004384238.1| - 0.034 13.4 0.0 0.051 12.8 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain tRNA_U5-meth_tr PF05958.11 gi|330507810|ref|YP_004384238.1| - 0.046 12.7 0.0 0.071 12.1 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase AdoMet_MTase PF07757.13 gi|330507810|ref|YP_004384238.1| - 0.05 13.9 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_20 PF12147.8 gi|330507810|ref|YP_004384238.1| - 0.054 12.6 0.1 0.093 11.9 0.1 1.3 1 0 0 1 1 1 0 Putative methyltransferase TPMT PF05724.11 gi|330507810|ref|YP_004384238.1| - 0.058 13.1 0.0 0.078 12.6 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Pox_MCEL PF03291.16 gi|330507810|ref|YP_004384238.1| - 0.17 11.0 0.0 9.9 5.2 0.0 2.2 2 0 0 2 2 2 0 mRNA capping enzyme PCMT PF01135.19 gi|330507810|ref|YP_004384238.1| - 0.2 11.4 0.0 0.39 10.4 0.0 1.6 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) LPG_synthase_TM PF03706.13 gi|330507811|ref|YP_004384239.1| - 1.1e-33 117.0 27.2 1.5e-33 116.7 27.2 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region PspB PF06667.12 gi|330507811|ref|YP_004384239.1| - 0.85 9.7 3.6 1.3 9.2 0.3 2.6 2 0 0 2 2 2 0 Phage shock protein B rve PF00665.26 gi|330507812|ref|YP_004384240.1| - 1.4e-25 89.8 0.0 2.2e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 gi|330507812|ref|YP_004384240.1| - 2.7e-19 69.1 0.3 1.9e-18 66.3 0.3 2.1 2 0 0 2 2 2 1 HTH-like domain rve_3 PF13683.6 gi|330507812|ref|YP_004384240.1| - 3.8e-16 58.6 0.1 9.1e-16 57.4 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|330507812|ref|YP_004384240.1| - 4.7e-08 33.1 3.6 9.4e-08 32.1 2.4 2.1 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 gi|330507812|ref|YP_004384240.1| - 0.00016 21.9 0.3 0.00028 21.1 0.3 1.4 1 0 0 1 1 1 1 DDE domain GP3_package PF16677.5 gi|330507812|ref|YP_004384240.1| - 0.027 14.6 0.1 12 6.1 0.0 2.4 2 0 0 2 2 2 0 DNA-packaging protein gp3 HTH_Tnp_Tc3_2 PF01498.18 gi|330507812|ref|YP_004384240.1| - 0.041 14.1 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_Tnp_1_2 PF13022.6 gi|330507812|ref|YP_004384240.1| - 0.049 13.8 0.1 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_Tnp_1 PF01527.20 gi|330507813|ref|YP_004384241.1| - 9.9e-11 41.8 0.1 1.6e-10 41.1 0.0 1.5 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.6 gi|330507813|ref|YP_004384241.1| - 0.002 17.8 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|330507813|ref|YP_004384241.1| - 0.0046 17.0 0.0 0.0099 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PKcGMP_CC PF16808.5 gi|330507813|ref|YP_004384241.1| - 0.033 14.1 0.3 0.074 12.9 0.3 1.6 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4733 PF15878.5 gi|330507813|ref|YP_004384241.1| - 0.062 13.8 0.1 0.13 12.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4733) Glyco_hydro_26 PF02156.15 gi|330507814|ref|YP_004384242.1| - 2.4e-05 23.9 3.5 4.5e-05 23.0 3.5 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 SBBP PF06739.11 gi|330507815|ref|YP_004384243.1| - 8.5e-64 211.3 69.9 2.3e-11 43.5 3.2 7.8 8 0 0 8 8 8 7 Beta-propeller repeat PKD PF00801.20 gi|330507815|ref|YP_004384243.1| - 7.5e-05 22.5 1.8 0.00034 20.4 1.8 2.1 1 0 0 1 1 1 1 PKD domain NHL PF01436.21 gi|330507815|ref|YP_004384243.1| - 0.0013 18.7 3.3 3.5 7.8 0.0 4.8 5 0 0 5 5 5 2 NHL repeat UDPG_MGDP_dh_N PF03721.14 gi|330507816|ref|YP_004384244.1| - 2.3e-52 177.3 0.0 4.2e-52 176.5 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|330507816|ref|YP_004384244.1| - 4.5e-38 129.4 0.0 7.9e-38 128.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|330507816|ref|YP_004384244.1| - 1.6e-26 92.8 0.0 6.3e-26 90.8 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pyr_redox PF00070.27 gi|330507816|ref|YP_004384244.1| - 0.0016 18.9 0.1 0.0049 17.4 0.1 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|330507816|ref|YP_004384244.1| - 0.0044 16.3 0.0 0.0073 15.6 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|330507816|ref|YP_004384244.1| - 0.0069 16.3 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|330507816|ref|YP_004384244.1| - 0.022 14.3 0.2 0.044 13.4 0.2 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|330507816|ref|YP_004384244.1| - 0.024 14.0 0.0 0.046 13.0 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|330507816|ref|YP_004384244.1| - 0.024 13.7 0.1 0.045 12.8 0.1 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|330507816|ref|YP_004384244.1| - 0.074 13.3 0.4 0.52 10.6 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DpaA_N PF16924.5 gi|330507816|ref|YP_004384244.1| - 0.16 12.1 0.4 1.9 8.6 0.0 2.8 3 0 0 3 3 3 0 Dipicolinate synthase subunit A N-terminal domain NTP_transferase PF00483.23 gi|330507817|ref|YP_004384245.1| - 3.6e-38 131.6 0.0 4.3e-38 131.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|330507817|ref|YP_004384245.1| - 4.5e-10 40.1 0.0 5e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 gi|330507817|ref|YP_004384245.1| - 0.0018 18.1 0.0 0.0026 17.6 0.0 1.3 1 1 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.19 gi|330507817|ref|YP_004384245.1| - 0.0061 16.3 0.0 0.071 12.8 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DDE_Tnp_1 PF01609.21 gi|330507818|ref|YP_004384246.1| - 0.08 12.6 0.1 0.091 12.4 0.1 1.0 1 0 0 1 1 1 0 Transposase DDE domain Glycos_transf_1 PF00534.20 gi|330507819|ref|YP_004384247.1| - 1.5e-20 73.4 0.0 1.8e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330507819|ref|YP_004384247.1| - 1.1e-12 48.6 0.1 1.5e-12 48.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|330507819|ref|YP_004384247.1| - 0.00045 20.5 0.0 0.0006 20.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|330507819|ref|YP_004384247.1| - 0.16 10.8 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase ABC2_membrane PF01061.24 gi|330507820|ref|YP_004384248.1| - 2.7e-23 82.5 33.3 2.7e-23 82.5 33.3 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330507820|ref|YP_004384248.1| - 0.0028 16.8 27.4 0.0028 16.8 27.4 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|330507821|ref|YP_004384249.1| - 2.8e-24 86.2 0.1 2.5e-23 83.1 0.1 2.1 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330507821|ref|YP_004384249.1| - 6.6e-08 32.7 0.9 0.00087 19.2 0.7 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|330507821|ref|YP_004384249.1| - 7.6e-05 22.4 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|330507821|ref|YP_004384249.1| - 0.00026 20.9 0.3 0.36 10.7 0.2 2.4 2 0 0 2 2 2 2 NTPase AAA_15 PF13175.6 gi|330507821|ref|YP_004384249.1| - 0.002 17.9 1.7 0.0052 16.5 0.9 1.6 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|330507821|ref|YP_004384249.1| - 0.0021 18.6 2.2 0.0026 18.3 1.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|330507821|ref|YP_004384249.1| - 0.0028 18.0 0.0 0.004 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|330507821|ref|YP_004384249.1| - 0.0036 17.7 0.0 0.016 15.6 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|330507821|ref|YP_004384249.1| - 0.0049 16.6 0.0 0.11 12.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|330507821|ref|YP_004384249.1| - 0.0065 15.9 0.5 0.025 14.0 0.1 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain PRK PF00485.18 gi|330507821|ref|YP_004384249.1| - 0.037 13.8 0.3 0.08 12.7 0.1 1.7 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family T2SSE PF00437.20 gi|330507821|ref|YP_004384249.1| - 0.042 12.9 0.2 2.7 7.0 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|330507821|ref|YP_004384249.1| - 0.064 13.6 0.0 0.13 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|330507821|ref|YP_004384249.1| - 0.073 13.3 0.1 0.2 12.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|330507821|ref|YP_004384249.1| - 0.12 12.2 0.7 0.58 10.0 0.7 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|330507821|ref|YP_004384249.1| - 0.13 12.2 0.0 0.64 9.9 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase NACHT PF05729.12 gi|330507821|ref|YP_004384249.1| - 0.14 12.1 0.1 0.33 10.9 0.0 1.7 2 0 0 2 2 2 0 NACHT domain DUF3221 PF11518.8 gi|330507821|ref|YP_004384249.1| - 0.17 12.2 0.0 0.35 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3221) T4SS-DNA_transf PF02534.14 gi|330507821|ref|YP_004384249.1| - 0.18 10.6 0.0 14 4.4 0.0 2.0 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer B12-binding PF02310.19 gi|330507822|ref|YP_004384250.1| - 4e-24 85.0 0.0 1.1e-22 80.3 0.0 2.7 3 0 0 3 3 3 1 B12 binding domain Radical_SAM PF04055.21 gi|330507822|ref|YP_004384250.1| - 2.9e-17 63.5 0.0 1.3e-16 61.5 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM_N PF08497.10 gi|330507822|ref|YP_004384250.1| - 0.16 11.1 0.0 0.29 10.3 0.0 1.4 1 0 0 1 1 1 0 Radical SAM N-terminal CbiA PF01656.23 gi|330507822|ref|YP_004384250.1| - 0.17 12.0 0.0 0.24 11.4 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain UbiA PF01040.18 gi|330507823|ref|YP_004384251.1| - 6.1e-24 84.7 23.3 2.1e-23 82.9 22.6 2.0 1 1 0 1 1 1 1 UbiA prenyltransferase family YebO PF13974.6 gi|330507823|ref|YP_004384251.1| - 0.034 14.2 1.0 1.6 8.9 0.6 2.9 2 0 0 2 2 2 0 YebO-like protein Synaptonemal_3 PF15191.6 gi|330507823|ref|YP_004384251.1| - 0.096 12.5 0.2 0.16 11.8 0.2 1.2 1 0 0 1 1 1 0 Synaptonemal complex central element protein 3 Transposase_20 PF02371.16 gi|330507824|ref|YP_004384252.1| - 2.1e-23 82.5 0.2 6.2e-23 80.9 0.1 1.9 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330507824|ref|YP_004384252.1| - 6.1e-23 81.4 0.0 1.6e-22 80.1 0.0 1.7 2 0 0 2 2 2 1 Transposase SET_assoc PF11767.8 gi|330507824|ref|YP_004384252.1| - 0.0093 15.6 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 1 Histone lysine methyltransferase SET associated Ish1 PF10281.9 gi|330507824|ref|YP_004384252.1| - 0.023 15.0 0.0 0.073 13.4 0.0 1.9 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein Hjc PF01870.18 gi|330507824|ref|YP_004384252.1| - 0.028 14.4 0.1 0.078 13.0 0.1 1.8 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) BING4CT PF08149.11 gi|330507824|ref|YP_004384252.1| - 0.089 12.6 0.1 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 BING4CT (NUC141) domain DUF4164 PF13747.6 gi|330507824|ref|YP_004384252.1| - 0.19 12.0 3.9 1 9.7 0.5 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) PHP_C PF13263.6 gi|330507825|ref|YP_004384253.1| - 2.7e-09 36.7 0.0 4.9e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|330507825|ref|YP_004384253.1| - 4.4e-07 30.3 0.0 4.7e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 PHP domain Methyltransf_23 PF13489.6 gi|330507827|ref|YP_004384255.1| - 4.6e-11 42.8 0.0 8.8e-11 41.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507827|ref|YP_004384255.1| - 1.8e-10 41.3 0.0 3.9e-10 40.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330507827|ref|YP_004384255.1| - 1.1e-07 31.8 0.0 2.1e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330507827|ref|YP_004384255.1| - 4.5e-06 27.3 0.0 9.5e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330507827|ref|YP_004384255.1| - 4.3e-05 24.2 0.0 0.00011 22.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|330507827|ref|YP_004384255.1| - 0.015 14.4 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_29 PF03141.16 gi|330507827|ref|YP_004384255.1| - 0.033 12.7 0.0 0.05 12.2 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Mucin PF01456.17 gi|330507828|ref|YP_004384256.1| - 0.0045 17.0 0.2 0.0056 16.7 0.2 1.1 1 0 0 1 1 1 1 Mucin-like glycoprotein BAR PF03114.18 gi|330507828|ref|YP_004384256.1| - 0.17 11.5 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 BAR domain CBP_BcsF PF11120.8 gi|330507829|ref|YP_004384257.1| - 0.085 13.0 1.0 0.15 12.2 1.0 1.6 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsF MetW PF07021.12 gi|330507830|ref|YP_004384258.1| - 9.8e-13 48.1 0.3 2.3e-12 46.9 0.3 1.6 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.12 gi|330507830|ref|YP_004384258.1| - 1.4e-09 38.4 0.0 3e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330507830|ref|YP_004384258.1| - 3.6e-09 37.2 0.0 9e-09 35.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330507830|ref|YP_004384258.1| - 2.9e-08 33.7 0.0 6.9e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330507830|ref|YP_004384258.1| - 5.3e-08 32.8 0.1 1.5e-07 31.4 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330507830|ref|YP_004384258.1| - 4.2e-06 27.4 0.1 4.2e-06 27.4 0.1 2.7 2 1 0 2 2 2 1 Methyltransferase domain Apolipoprotein PF01442.18 gi|330507830|ref|YP_004384258.1| - 0.0036 17.2 1.6 0.0072 16.2 1.6 1.5 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain AdoMet_MTase PF07757.13 gi|330507830|ref|YP_004384258.1| - 0.011 16.1 0.0 0.03 14.7 0.0 1.8 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Pox_MCEL PF03291.16 gi|330507830|ref|YP_004384258.1| - 0.018 14.1 0.2 0.038 13.1 0.2 1.5 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_32 PF13679.6 gi|330507830|ref|YP_004384258.1| - 0.019 15.0 0.0 0.019 15.0 0.0 2.8 3 1 0 3 3 3 0 Methyltransferase domain PLC-beta_C PF08703.10 gi|330507830|ref|YP_004384258.1| - 0.022 14.8 5.2 0.036 14.0 0.1 2.8 2 1 0 3 3 3 0 PLC-beta C terminal TehB PF03848.14 gi|330507830|ref|YP_004384258.1| - 0.032 13.6 0.1 0.068 12.6 0.1 1.5 1 0 0 1 1 1 0 Tellurite resistance protein TehB CSN8_PSD8_EIF3K PF10075.9 gi|330507830|ref|YP_004384258.1| - 0.043 13.8 0.5 0.14 12.1 0.2 1.8 1 1 1 2 2 2 0 CSN8/PSMD8/EIF3K family ARGLU PF15346.6 gi|330507830|ref|YP_004384258.1| - 0.043 13.7 9.1 0.28 11.0 0.5 3.0 2 1 1 3 3 3 0 Arginine and glutamate-rich 1 CAP_N PF01213.19 gi|330507830|ref|YP_004384258.1| - 0.08 12.4 1.8 0.14 11.6 1.8 1.4 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal DUF3201 PF11447.8 gi|330507830|ref|YP_004384258.1| - 0.23 11.0 1.0 23 4.5 0.1 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF3201) Mobilization_B PF17511.2 gi|330507830|ref|YP_004384258.1| - 0.27 11.6 10.6 1.4 9.3 2.0 2.3 1 1 1 2 2 2 0 Mobilization protein B Prominin PF05478.11 gi|330507830|ref|YP_004384258.1| - 0.33 8.9 3.1 0.8 7.6 0.8 1.7 1 1 1 2 2 2 0 Prominin Mer2 PF09074.10 gi|330507830|ref|YP_004384258.1| - 9.1 6.0 15.9 0.063 13.1 6.1 2.3 3 0 0 3 3 3 0 Mer2 Glycos_transf_1 PF00534.20 gi|330507831|ref|YP_004384259.1| - 8.1e-30 103.6 0.0 1.2e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330507831|ref|YP_004384259.1| - 1.3e-17 64.5 0.0 1.7e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330507831|ref|YP_004384259.1| - 0.14 12.2 0.0 0.55 10.2 0.0 1.9 1 1 1 2 2 2 0 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|330507832|ref|YP_004384260.1| - 3.5e-13 49.5 0.0 5.3e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330507832|ref|YP_004384260.1| - 2.1e-09 37.9 0.0 4.2e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 rve PF00665.26 gi|330507833|ref|YP_004384261.1| - 1.1e-15 57.9 0.0 1.9e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 gi|330507833|ref|YP_004384261.1| - 2.5e-06 27.1 0.2 5.9e-06 25.9 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve_3 PF13683.6 gi|330507833|ref|YP_004384261.1| - 4.2e-06 26.4 0.5 9.8e-05 22.1 0.1 2.9 2 1 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 gi|330507833|ref|YP_004384261.1| - 7e-05 22.9 7.5 0.00019 21.5 0.7 3.5 3 1 0 3 3 3 1 HTH-like domain HTH_28 PF13518.6 gi|330507833|ref|YP_004384261.1| - 0.0011 19.0 0.3 0.0011 19.0 0.3 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|330507833|ref|YP_004384261.1| - 0.0015 18.5 0.0 0.0029 17.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|330507833|ref|YP_004384261.1| - 0.0024 17.8 0.2 0.0044 16.9 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_32 PF13565.6 gi|330507833|ref|YP_004384261.1| - 0.0025 18.4 0.3 0.0083 16.7 0.1 2.0 1 1 1 2 2 2 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 gi|330507833|ref|YP_004384261.1| - 0.0036 16.7 0.0 0.0072 15.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_33 PF13592.6 gi|330507833|ref|YP_004384261.1| - 0.012 15.2 1.3 0.1 12.3 0.1 2.6 3 0 0 3 3 3 0 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|330507833|ref|YP_004384261.1| - 0.2 11.2 1.8 0.27 10.8 0.4 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2877 PF11392.8 gi|330507834|ref|YP_004384262.1| - 0.036 14.8 0.4 0.086 13.6 0.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2877) rve_2 PF13333.6 gi|330507836|ref|YP_004384264.1| - 0.00022 21.4 0.3 0.00027 21.1 0.3 1.1 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|330507836|ref|YP_004384264.1| - 0.0032 17.2 0.1 0.004 16.9 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain PseudoU_synth_1 PF01416.20 gi|330507838|ref|YP_004384266.1| - 7.5e-06 26.4 0.0 0.075 13.5 0.0 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase HxlR PF01638.17 gi|330507839|ref|YP_004384267.1| - 0.029 14.2 0.1 0.072 13.0 0.0 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix B3 PF02362.21 gi|330507839|ref|YP_004384267.1| - 0.032 14.1 0.3 0.53 10.2 0.0 2.2 2 0 0 2 2 2 0 B3 DNA binding domain DUF2383 PF09537.10 gi|330507839|ref|YP_004384267.1| - 0.071 13.5 0.2 0.24 11.7 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) CENP-F_leu_zip PF10473.9 gi|330507839|ref|YP_004384267.1| - 0.081 13.0 4.6 0.19 11.7 0.4 2.7 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HisKA_3 PF07730.13 gi|330507839|ref|YP_004384267.1| - 0.089 13.3 1.2 0.44 11.1 0.3 2.0 2 0 0 2 2 2 0 Histidine kinase Glycos_transf_2 PF00535.26 gi|330507840|ref|YP_004384268.1| - 6.5e-23 81.4 1.7 1.5e-22 80.2 1.7 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|330507840|ref|YP_004384268.1| - 1.5e-22 79.9 0.3 4.5e-22 78.4 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_tranf_2_3 PF13641.6 gi|330507840|ref|YP_004384268.1| - 5e-18 65.8 0.0 9.7e-18 64.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_1_4 PF13692.6 gi|330507840|ref|YP_004384268.1| - 2.5e-10 40.9 0.0 8.9e-10 39.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_2_3 PF13632.6 gi|330507840|ref|YP_004384268.1| - 1.6e-07 31.4 0.0 2.6e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_trans_1_2 PF13524.6 gi|330507840|ref|YP_004384268.1| - 3.7e-05 24.0 0.0 9.5e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_tranf_2_5 PF13712.6 gi|330507840|ref|YP_004384268.1| - 4.8e-05 23.1 0.9 0.00015 21.5 0.9 1.8 1 0 0 1 1 1 1 Glycosyltransferase like family Glyco_transf_4 PF13439.6 gi|330507840|ref|YP_004384268.1| - 0.0018 18.3 0.0 0.0071 16.4 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_21 PF13506.6 gi|330507840|ref|YP_004384268.1| - 0.007 15.9 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|330507840|ref|YP_004384268.1| - 0.0089 16.5 0.1 0.033 14.7 0.1 2.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 DnaB PF00772.21 gi|330507840|ref|YP_004384268.1| - 0.73 9.9 3.4 2.7 8.1 0.1 3.2 3 0 0 3 3 3 0 DnaB-like helicase N terminal domain Epimerase PF01370.21 gi|330507841|ref|YP_004384269.1| - 3.8e-39 134.6 0.0 5.3e-39 134.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|330507841|ref|YP_004384269.1| - 5.2e-38 131.3 0.1 1.9e-37 129.4 0.1 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|330507841|ref|YP_004384269.1| - 6.9e-09 35.1 0.0 1.8e-07 30.5 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|330507841|ref|YP_004384269.1| - 2.3e-06 27.0 0.1 1.2e-05 24.5 0.1 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|330507841|ref|YP_004384269.1| - 0.00061 19.0 0.3 0.018 14.2 0.1 2.8 2 2 0 2 2 2 1 Male sterility protein adh_short PF00106.25 gi|330507841|ref|YP_004384269.1| - 0.018 14.5 0.0 0.05 13.1 0.0 1.8 1 0 0 1 1 1 0 short chain dehydrogenase NmrA PF05368.13 gi|330507841|ref|YP_004384269.1| - 0.047 13.3 0.0 5.8 6.4 0.0 2.2 2 0 0 2 2 2 0 NmrA-like family Polysacc_synt_2 PF02719.15 gi|330507841|ref|YP_004384269.1| - 0.064 12.4 0.0 0.097 11.8 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein KR PF08659.10 gi|330507841|ref|YP_004384269.1| - 0.07 13.0 0.0 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 KR domain DUF1836 PF08876.11 gi|330507841|ref|YP_004384269.1| - 0.071 13.2 0.1 0.35 10.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1836) Sacchrp_dh_NADP PF03435.18 gi|330507841|ref|YP_004384269.1| - 0.11 12.8 0.0 0.73 10.1 0.0 2.2 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain GDP_Man_Dehyd PF16363.5 gi|330507843|ref|YP_004384271.1| - 9.2e-06 25.3 0.0 9.6e-06 25.2 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_synthase PF02540.17 gi|330507845|ref|YP_004384273.1| - 7.1e-77 257.8 0.0 9.2e-77 257.4 0.0 1.1 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.22 gi|330507845|ref|YP_004384273.1| - 2.8e-12 46.5 0.0 6.2e-12 45.4 0.0 1.5 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase Asn_synthase PF00733.21 gi|330507845|ref|YP_004384273.1| - 0.00063 19.5 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|330507845|ref|YP_004384273.1| - 0.19 10.5 0.0 0.27 10.0 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase HTH_IclR PF09339.10 gi|330507846|ref|YP_004384274.1| - 0.00022 20.9 1.0 0.00052 19.8 0.2 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|330507846|ref|YP_004384274.1| - 0.0011 18.8 0.1 0.0023 17.8 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|330507846|ref|YP_004384274.1| - 0.028 14.3 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB BK_channel_a PF03493.18 gi|330507846|ref|YP_004384274.1| - 0.089 13.0 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Calcium-activated BK potassium channel alpha subunit SieB PF14163.6 gi|330507846|ref|YP_004384274.1| - 0.15 11.5 0.2 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 Super-infection exclusion protein B Rho_N PF07498.12 gi|330507847|ref|YP_004384275.1| - 1.4 8.9 5.7 6.5 6.8 0.1 3.3 4 0 0 4 4 4 0 Rho termination factor, N-terminal domain Peptidase_M22 PF00814.25 gi|330507849|ref|YP_004384277.1| - 1.3e-82 277.6 0.1 1.6e-82 277.3 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family DUF1490 PF07371.12 gi|330507849|ref|YP_004384277.1| - 0.034 14.2 0.1 0.16 12.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1490) Carbam_trans_N PF02543.15 gi|330507849|ref|YP_004384277.1| - 0.044 13.5 0.0 0.071 12.8 0.0 1.2 1 0 0 1 1 1 0 Carbamoyltransferase N-terminus GARS_A PF01071.19 gi|330507850|ref|YP_004384278.1| - 5.5e-58 196.0 0.0 7.9e-58 195.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|330507850|ref|YP_004384278.1| - 1.2e-24 86.9 0.5 2.3e-24 86.0 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|330507850|ref|YP_004384278.1| - 2.6e-23 82.1 1.4 4.8e-23 81.2 0.1 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|330507850|ref|YP_004384278.1| - 0.031 14.3 0.1 0.45 10.5 0.1 2.2 1 1 0 1 1 1 0 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|330507850|ref|YP_004384278.1| - 0.042 13.1 0.0 0.42 9.8 0.0 2.1 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATP-grasp_2 PF08442.10 gi|330507850|ref|YP_004384278.1| - 0.098 12.2 0.1 0.25 10.9 0.0 1.6 2 0 0 2 2 2 0 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|330507850|ref|YP_004384278.1| - 0.12 11.8 0.0 0.81 9.1 0.0 2.2 2 1 1 3 3 3 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Gln-synt_C PF00120.24 gi|330507851|ref|YP_004384279.1| - 2.5e-129 431.2 0.0 2.9e-129 431.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|330507851|ref|YP_004384279.1| - 9.6e-31 105.4 0.0 1.6e-30 104.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|330507851|ref|YP_004384279.1| - 0.024 14.5 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 Glutamine synthetase N-terminal domain AP_endonuc_2 PF01261.24 gi|330507853|ref|YP_004384281.1| - 2.7e-32 111.9 0.0 3.2e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Dak1 PF02733.17 gi|330507853|ref|YP_004384281.1| - 0.046 12.6 0.0 0.071 12.0 0.0 1.3 1 0 0 1 1 1 0 Dak1 domain Response_reg PF00072.24 gi|330507854|ref|YP_004384282.1| - 3.5e-24 85.1 0.3 3.9e-24 85.0 0.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Radical_SAM PF04055.21 gi|330507855|ref|YP_004384283.1| - 3.7e-25 89.2 0.0 1.2e-24 87.6 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|330507855|ref|YP_004384283.1| - 1.8e-17 63.4 0.0 3.8e-17 62.4 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation Pentapeptide_3 PF13576.6 gi|330507856|ref|YP_004384284.1| - 1.5e-26 92.3 55.3 1.3e-07 31.6 9.4 6.4 3 1 5 8 8 8 6 Pentapeptide repeats (9 copies) HisG PF01634.18 gi|330507857|ref|YP_004384285.1| - 4.9e-43 146.9 0.0 7.4e-43 146.3 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|330507857|ref|YP_004384285.1| - 1.4e-22 79.6 0.1 3.5e-22 78.3 0.1 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain Metallophos_2 PF12850.7 gi|330507858|ref|YP_004384286.1| - 3.4e-10 40.4 0.0 0.00056 20.1 0.0 2.2 1 1 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|330507858|ref|YP_004384286.1| - 2.3e-06 28.3 0.1 7e-06 26.7 0.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Nitroreductase PF00881.24 gi|330507859|ref|YP_004384287.1| - 4.8e-29 101.6 3.2 4.2e-15 56.2 0.2 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|330507859|ref|YP_004384287.1| - 2.3e-09 37.2 0.0 2.1e-08 34.0 0.0 2.2 1 1 0 1 1 1 1 Putative TM nitroreductase Radical_SAM_C PF16199.5 gi|330507860|ref|YP_004384288.1| - 9.6e-27 92.8 0.1 1.6e-26 92.1 0.1 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|330507860|ref|YP_004384288.1| - 8.6e-20 71.8 0.0 1.7e-19 70.8 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|330507860|ref|YP_004384288.1| - 5e-09 36.4 0.3 1.1e-08 35.3 0.3 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|330507860|ref|YP_004384288.1| - 4.6e-06 26.6 0.0 1.1e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|330507860|ref|YP_004384288.1| - 0.0034 17.8 0.1 0.0065 16.9 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PCP_red PF08369.10 gi|330507860|ref|YP_004384288.1| - 0.16 12.2 0.7 4.6 7.5 0.1 2.9 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Ribosomal_S8e PF01201.22 gi|330507861|ref|YP_004384289.1| - 1.2e-32 112.9 3.4 1.4e-32 112.7 3.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF1922 PF09082.10 gi|330507862|ref|YP_004384290.1| - 1.4e-28 99.0 0.1 1.5e-28 98.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) 4HBT PF03061.22 gi|330507863|ref|YP_004384291.1| - 9.6e-10 38.7 0.0 1.3e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|330507863|ref|YP_004384291.1| - 0.0028 17.9 0.0 0.0032 17.8 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily OrfB_IS605 PF01385.19 gi|330507864|ref|YP_004384292.1| - 1.7e-24 86.3 0.2 3.4e-24 85.4 0.2 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|330507864|ref|YP_004384292.1| - 8.8e-24 83.2 1.1 2.5e-23 81.8 0.6 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|330507864|ref|YP_004384292.1| - 1.3e-06 27.8 0.1 2.9e-06 26.7 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HypA PF01155.19 gi|330507864|ref|YP_004384292.1| - 0.01 15.8 0.1 0.032 14.2 0.1 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|330507864|ref|YP_004384292.1| - 0.056 13.0 1.5 0.63 9.6 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|330507864|ref|YP_004384292.1| - 0.068 12.6 5.1 0.88 9.1 5.1 2.4 1 1 0 1 1 1 0 zinc-ribbon domain RecR PF02132.15 gi|330507864|ref|YP_004384292.1| - 0.18 11.4 3.8 0.36 10.4 1.5 2.4 1 1 1 2 2 2 0 RecR protein Zn_ribbon_SprT PF17283.2 gi|330507864|ref|YP_004384292.1| - 0.52 10.3 3.7 1.3 9.0 3.7 1.7 1 0 0 1 1 1 0 SprT-like zinc ribbon domain UPF0547 PF10571.9 gi|330507864|ref|YP_004384292.1| - 1.5 9.0 5.1 1.3 9.2 0.7 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Met_10 PF02475.16 gi|330507865|ref|YP_004384293.1| - 3.4e-48 164.0 0.0 4.1e-48 163.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|330507865|ref|YP_004384293.1| - 2.6e-07 30.4 0.0 6.9e-07 29.1 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|330507865|ref|YP_004384293.1| - 0.00013 21.6 0.0 0.00021 20.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltrans_SAM PF10672.9 gi|330507865|ref|YP_004384293.1| - 0.0022 17.2 0.0 0.003 16.7 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_25 PF13649.6 gi|330507865|ref|YP_004384293.1| - 0.0046 17.6 0.0 0.0084 16.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|330507865|ref|YP_004384293.1| - 0.011 14.8 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_11 PF08241.12 gi|330507865|ref|YP_004384293.1| - 0.022 15.4 0.0 0.055 14.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|330507865|ref|YP_004384293.1| - 0.026 14.2 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_24 PF13578.6 gi|330507865|ref|YP_004384293.1| - 0.08 14.0 0.0 0.16 13.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Transposase_20 PF02371.16 gi|330507866|ref|YP_004384294.1| - 1.4e-24 86.2 0.0 2.4e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330507866|ref|YP_004384294.1| - 5.2e-23 81.6 0.0 1.1e-22 80.6 0.0 1.5 1 0 0 1 1 1 1 Transposase DUF4164 PF13747.6 gi|330507866|ref|YP_004384294.1| - 1.8 8.9 4.4 5.8 7.3 0.2 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) SidC_N PF18219.1 gi|330507868|ref|YP_004384296.1| - 0.055 12.4 0.0 0.066 12.2 0.0 1.0 1 0 0 1 1 1 0 SidC N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|330507870|ref|YP_004384298.1| - 5.4e-23 80.7 0.6 1.5e-22 79.3 0.0 2.0 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330507870|ref|YP_004384298.1| - 0.02 15.1 1.0 0.031 14.5 1.0 1.2 1 0 0 1 1 1 0 Probable transposase PriA_CRR PF18319.1 gi|330507870|ref|YP_004384298.1| - 1.4 9.0 8.0 1.8 8.6 0.1 2.4 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain zf-CCHC_2 PF13696.6 gi|330507870|ref|YP_004384298.1| - 1.6 8.6 7.3 0.51 10.2 0.3 2.4 2 0 0 2 2 2 0 Zinc knuckle HAD_2 PF13419.6 gi|330507871|ref|YP_004384299.1| - 1.5e-10 41.4 0.0 2e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|330507871|ref|YP_004384299.1| - 0.00017 21.9 0.0 0.00092 19.6 0.0 1.8 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|330507871|ref|YP_004384299.1| - 0.00056 19.9 0.0 0.00099 19.1 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like PNK3P PF08645.11 gi|330507871|ref|YP_004384299.1| - 0.0013 18.5 0.0 0.0025 17.5 0.0 1.4 1 1 0 1 1 1 1 Polynucleotide kinase 3 phosphatase Hydrolase_6 PF13344.6 gi|330507871|ref|YP_004384299.1| - 0.038 14.1 0.0 0.049 13.8 0.0 1.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|330507871|ref|YP_004384299.1| - 0.14 12.6 0.1 0.22 11.9 0.1 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase TrmB PF01978.19 gi|330507872|ref|YP_004384300.1| - 0.00017 21.4 0.1 0.00029 20.6 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|330507872|ref|YP_004384300.1| - 0.0013 19.0 0.0 0.0017 18.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.6 gi|330507872|ref|YP_004384300.1| - 0.0055 16.7 0.0 0.0073 16.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TFIIE_alpha PF02002.17 gi|330507872|ref|YP_004384300.1| - 0.0056 16.5 0.0 0.0084 16.0 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.6 gi|330507872|ref|YP_004384300.1| - 0.013 15.0 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|330507872|ref|YP_004384300.1| - 0.029 14.3 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|330507872|ref|YP_004384300.1| - 0.043 14.0 0.1 0.066 13.4 0.1 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|330507872|ref|YP_004384300.1| - 0.067 13.0 0.0 0.086 12.6 0.0 1.3 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_9 PF08221.11 gi|330507872|ref|YP_004384300.1| - 0.11 12.6 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain PRK PF00485.18 gi|330507873|ref|YP_004384301.1| - 2.6e-45 154.6 0.0 4.3e-45 153.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_23 PF13476.6 gi|330507873|ref|YP_004384301.1| - 0.0012 19.3 0.2 0.0028 18.2 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|330507873|ref|YP_004384301.1| - 0.012 16.1 0.0 0.024 15.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|330507873|ref|YP_004384301.1| - 0.013 14.8 0.1 0.035 13.4 0.1 1.7 1 1 1 2 2 2 0 Zeta toxin AAA_16 PF13191.6 gi|330507873|ref|YP_004384301.1| - 0.014 15.8 0.0 0.025 15.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|330507873|ref|YP_004384301.1| - 0.036 14.1 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|330507873|ref|YP_004384301.1| - 0.039 14.5 0.0 0.058 13.9 0.0 1.6 1 1 0 1 1 1 0 ABC transporter CbiA PF01656.23 gi|330507873|ref|YP_004384301.1| - 0.082 13.0 0.0 0.1 12.7 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain CPT PF07931.12 gi|330507873|ref|YP_004384301.1| - 0.091 12.6 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_29 PF13555.6 gi|330507873|ref|YP_004384301.1| - 0.18 11.5 0.1 0.37 10.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|330507873|ref|YP_004384301.1| - 0.2 11.4 0.0 0.34 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain HTH_3 PF01381.22 gi|330507874|ref|YP_004384302.1| - 1.7e-11 44.0 0.1 3.6e-11 42.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|330507874|ref|YP_004384302.1| - 1.3e-06 28.3 0.4 3.9e-06 26.8 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|330507874|ref|YP_004384302.1| - 2.2e-05 24.7 0.1 6e-05 23.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|330507874|ref|YP_004384302.1| - 0.00018 21.4 0.1 0.0005 19.9 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|330507874|ref|YP_004384302.1| - 0.00077 19.2 0.1 0.0023 17.7 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_25 PF13413.6 gi|330507874|ref|YP_004384302.1| - 0.0037 17.1 0.1 0.012 15.5 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|330507874|ref|YP_004384302.1| - 0.03 14.1 0.7 0.03 14.1 0.7 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|330507874|ref|YP_004384302.1| - 0.054 13.3 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain NUMOD1 PF07453.13 gi|330507874|ref|YP_004384302.1| - 0.065 13.5 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 NUMOD1 domain HTH_28 PF13518.6 gi|330507874|ref|YP_004384302.1| - 0.099 12.8 0.1 0.24 11.6 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1743 PF08489.11 gi|330507875|ref|YP_004384303.1| - 1.5e-41 141.1 0.0 2.4e-41 140.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|330507875|ref|YP_004384303.1| - 0.0036 17.2 0.0 0.0075 16.2 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain zinc-ribbons_6 PF07191.12 gi|330507875|ref|YP_004384303.1| - 0.025 14.6 0.9 0.043 13.8 0.9 1.3 1 0 0 1 1 1 0 zinc-ribbons HypA PF01155.19 gi|330507875|ref|YP_004384303.1| - 0.038 14.0 0.2 0.08 13.0 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NTP_transf_2 PF01909.23 gi|330507875|ref|YP_004384303.1| - 0.051 13.9 0.0 0.097 13.0 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyltransferase domain C1_1 PF00130.22 gi|330507875|ref|YP_004384303.1| - 0.13 12.1 0.8 0.23 11.4 0.8 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.7 gi|330507875|ref|YP_004384303.1| - 0.82 9.7 4.8 1.9 8.5 4.8 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DHH PF01368.20 gi|330507876|ref|YP_004384304.1| - 5.3e-29 100.4 0.1 8.9e-29 99.7 0.1 1.4 1 0 0 1 1 1 1 DHH family DHHA2 PF02833.14 gi|330507876|ref|YP_004384304.1| - 1.9e-23 83.2 0.4 2.9e-23 82.6 0.4 1.3 1 0 0 1 1 1 1 DHHA2 domain Thymidylate_kin PF02223.17 gi|330507877|ref|YP_004384305.1| - 3.2e-37 128.0 0.0 3.8e-37 127.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_22 PF13401.6 gi|330507877|ref|YP_004384305.1| - 2.5e-05 24.6 0.0 6.8e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|330507877|ref|YP_004384305.1| - 0.00045 20.5 0.0 0.00066 20.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|330507877|ref|YP_004384305.1| - 0.0022 18.5 0.0 0.0063 17.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|330507877|ref|YP_004384305.1| - 0.0076 16.0 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|330507877|ref|YP_004384305.1| - 0.009 16.2 0.1 0.037 14.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain Ploopntkinase1 PF18748.1 gi|330507877|ref|YP_004384305.1| - 0.015 14.8 0.0 0.17 11.4 0.0 2.1 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 NACHT PF05729.12 gi|330507877|ref|YP_004384305.1| - 0.022 14.7 0.1 0.14 12.1 0.1 2.1 1 1 1 2 2 2 0 NACHT domain AAA_17 PF13207.6 gi|330507877|ref|YP_004384305.1| - 0.041 14.3 0.0 0.2 12.1 0.0 2.3 1 1 1 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|330507877|ref|YP_004384305.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|330507877|ref|YP_004384305.1| - 0.11 12.8 0.0 0.11 12.8 0.0 1.3 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|330507877|ref|YP_004384305.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|330507877|ref|YP_004384305.1| - 0.17 11.5 0.0 0.37 10.4 0.0 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MAF_flag10 PF01973.18 gi|330507878|ref|YP_004384306.1| - 2.3e-28 99.0 0.0 3.2e-28 98.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|330507878|ref|YP_004384306.1| - 0.00027 21.0 0.0 0.00048 20.2 0.0 1.3 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain FUSC PF04632.12 gi|330507880|ref|YP_004384308.1| - 0.13 10.8 18.0 0.036 12.6 3.5 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family TPR_MLP1_2 PF07926.12 gi|330507880|ref|YP_004384308.1| - 0.5 10.4 43.6 0.68 10.0 18.7 3.8 2 2 0 2 2 2 0 TPR/MLP1/MLP2-like protein Com_YlbF PF06133.11 gi|330507880|ref|YP_004384308.1| - 2.3 8.9 37.2 8.9 7.0 5.9 3.8 1 1 3 4 4 4 0 Control of competence regulator ComK, YlbF/YmcA Taxilin PF09728.9 gi|330507880|ref|YP_004384308.1| - 3.9 6.6 46.8 5.7 6.0 42.8 2.8 1 1 1 2 2 2 0 Myosin-like coiled-coil protein CCDC-167 PF15188.6 gi|330507880|ref|YP_004384308.1| - 4.2 7.8 34.6 0.5 10.8 8.1 4.1 2 1 2 4 4 4 0 Coiled-coil domain-containing protein 167 Fez1 PF06818.15 gi|330507880|ref|YP_004384308.1| - 5.5 7.4 40.0 2.4 8.6 14.2 2.6 1 1 1 2 2 2 0 Fez1 OmpH PF03938.14 gi|330507880|ref|YP_004384308.1| - 8.9 6.6 49.2 0.75 10.1 13.0 3.2 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) CGI-121 PF08617.10 gi|330507881|ref|YP_004384309.1| - 5.3e-14 52.7 0.0 7.9e-14 52.1 0.0 1.3 1 1 0 1 1 1 1 Kinase binding protein CGI-121 DUF2150 PF09920.9 gi|330507882|ref|YP_004384310.1| - 1.7e-66 223.8 2.9 1.9e-66 223.6 2.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Peptidase_M24 PF00557.24 gi|330507883|ref|YP_004384311.1| - 1.5e-38 132.6 0.0 1.9e-38 132.3 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 ILVD_EDD PF00920.21 gi|330507883|ref|YP_004384311.1| - 0.16 10.6 0.0 0.24 10.0 0.0 1.2 1 0 0 1 1 1 0 Dehydratase family Peptidase_M24 PF00557.24 gi|330507884|ref|YP_004384312.1| - 2.2e-42 145.1 0.2 2.7e-42 144.8 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|330507884|ref|YP_004384312.1| - 1.5e-05 25.7 0.0 2.7e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain GTP_cyclohydro2 PF00925.20 gi|330507884|ref|YP_004384312.1| - 0.17 11.4 0.0 0.31 10.6 0.0 1.3 1 0 0 1 1 1 0 GTP cyclohydrolase II PcrB PF01884.17 gi|330507885|ref|YP_004384313.1| - 6.3e-62 209.0 0.0 7.5e-62 208.7 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|330507885|ref|YP_004384313.1| - 0.00023 20.7 0.1 0.00037 20.0 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|330507885|ref|YP_004384313.1| - 0.00023 20.5 0.4 0.00037 19.8 0.4 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NanE PF04131.14 gi|330507885|ref|YP_004384313.1| - 0.00037 19.7 1.1 0.084 12.1 0.1 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|330507885|ref|YP_004384313.1| - 0.01 14.9 0.6 0.067 12.2 0.8 2.0 2 0 0 2 2 2 0 FMN-dependent dehydrogenase ThiG PF05690.14 gi|330507885|ref|YP_004384313.1| - 0.014 14.8 4.3 0.028 13.7 0.6 2.1 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Glu_synthase PF01645.17 gi|330507885|ref|YP_004384313.1| - 0.026 13.6 5.0 0.87 8.6 0.7 2.1 2 0 0 2 2 2 0 Conserved region in glutamate synthase Ribul_P_3_epim PF00834.19 gi|330507885|ref|YP_004384313.1| - 0.037 13.4 0.5 0.069 12.5 0.5 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family IMPDH PF00478.25 gi|330507885|ref|YP_004384313.1| - 0.074 12.0 0.9 0.3 10.0 0.3 1.9 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain IGPS PF00218.21 gi|330507885|ref|YP_004384313.1| - 0.21 10.7 0.1 0.36 10.0 0.1 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Ribosomal_L40e PF01020.17 gi|330507886|ref|YP_004384314.1| - 2.1e-05 24.3 4.3 2.5e-05 24.1 4.3 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DNA_RNApol_7kD PF03604.13 gi|330507886|ref|YP_004384314.1| - 0.00036 20.2 4.1 0.00055 19.6 4.1 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|330507886|ref|YP_004384314.1| - 0.00097 18.8 2.2 0.0015 18.2 2.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|330507886|ref|YP_004384314.1| - 0.0017 18.4 0.5 0.0017 18.4 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_L37e PF01907.19 gi|330507886|ref|YP_004384314.1| - 0.0099 16.0 2.2 0.012 15.7 2.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e UPF0547 PF10571.9 gi|330507886|ref|YP_004384314.1| - 0.025 14.7 1.0 0.036 14.1 1.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 malic PF00390.19 gi|330507887|ref|YP_004384315.1| - 2.6e-30 105.6 0.1 7e-23 81.4 0.1 2.4 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|330507887|ref|YP_004384315.1| - 6e-23 81.4 3.7 9.6e-22 77.5 3.5 2.8 2 1 0 2 2 2 1 Malic enzyme, NAD binding domain ELFV_dehydrog PF00208.21 gi|330507887|ref|YP_004384315.1| - 3.7e-05 23.6 0.0 8.8e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Pyr_redox_2 PF07992.14 gi|330507887|ref|YP_004384315.1| - 0.013 14.7 0.1 0.026 13.8 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|330507887|ref|YP_004384315.1| - 0.018 14.3 0.4 0.048 13.0 0.4 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|330507887|ref|YP_004384315.1| - 0.027 13.8 0.1 0.087 12.2 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|330507887|ref|YP_004384315.1| - 0.053 12.9 0.8 0.13 11.6 0.8 1.6 1 0 0 1 1 1 0 ThiF family Iso_dh PF00180.20 gi|330507888|ref|YP_004384316.1| - 4.9e-92 308.7 0.0 1.4e-91 307.3 0.0 1.6 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Antirestrict PF03230.13 gi|330507888|ref|YP_004384316.1| - 0.16 12.1 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Antirestriction protein Aconitase_C PF00694.19 gi|330507890|ref|YP_004384318.1| - 4.9e-20 72.2 0.1 7e-20 71.7 0.1 1.3 1 1 0 1 1 1 1 Aconitase C-terminal domain FMN_red PF03358.15 gi|330507891|ref|YP_004384319.1| - 1.2e-33 116.1 0.0 1.6e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|330507891|ref|YP_004384319.1| - 4.7e-06 26.4 0.0 5.2e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavoprotein PF02441.19 gi|330507892|ref|YP_004384320.1| - 3e-16 59.6 0.0 4.5e-16 59.0 0.0 1.4 1 1 0 1 1 1 1 Flavoprotein DHO_dh PF01180.21 gi|330507892|ref|YP_004384320.1| - 0.039 13.2 0.0 0.039 13.2 0.0 1.1 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase CbiX PF01903.17 gi|330507893|ref|YP_004384321.1| - 2.7e-26 92.0 0.0 3.1e-26 91.8 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|330507893|ref|YP_004384321.1| - 3e-05 23.5 0.0 3.2e-05 23.4 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|330507893|ref|YP_004384321.1| - 0.058 12.5 0.0 0.067 12.2 0.0 1.1 1 0 0 1 1 1 0 Ferrochelatase Mur_ligase_M PF08245.12 gi|330507894|ref|YP_004384322.1| - 0.00018 21.6 0.2 0.00029 20.9 0.2 1.3 1 0 0 1 1 1 1 Mur ligase middle domain YqjK PF13997.6 gi|330507894|ref|YP_004384322.1| - 0.088 13.1 0.0 0.21 11.9 0.0 1.7 1 0 0 1 1 1 0 YqjK-like protein Oxidored_nitro PF00148.19 gi|330507895|ref|YP_004384323.1| - 6e-18 64.8 0.0 7.4e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SHOCT PF09851.9 gi|330507895|ref|YP_004384323.1| - 0.00046 19.8 0.5 0.001 18.7 0.5 1.6 1 0 0 1 1 1 1 Short C-terminal domain SecE PF00584.20 gi|330507896|ref|YP_004384324.1| - 8.8e-06 25.6 0.0 9.4e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spore_YtfJ PF09579.10 gi|330507897|ref|YP_004384325.1| - 1e-18 67.2 1.8 1.3e-18 66.9 1.8 1.1 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) ApbA_C PF08546.11 gi|330507898|ref|YP_004384326.1| - 1e-32 112.9 0.0 2.5e-32 111.7 0.0 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|330507898|ref|YP_004384326.1| - 3.7e-25 88.3 0.0 5.3e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|330507898|ref|YP_004384326.1| - 0.0074 16.8 0.5 0.023 15.2 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase bPH_6 PF10756.9 gi|330507898|ref|YP_004384326.1| - 0.085 13.0 0.1 0.42 10.7 0.1 2.1 1 1 0 1 1 1 0 Bacterial PH domain HTH_5 PF01022.20 gi|330507900|ref|YP_004384328.1| - 5.1e-06 26.2 3.7 6.6e-06 25.9 0.2 2.6 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|330507900|ref|YP_004384328.1| - 0.00028 20.9 0.0 0.00057 19.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|330507900|ref|YP_004384328.1| - 0.0011 18.8 0.5 0.0029 17.6 0.3 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|330507900|ref|YP_004384328.1| - 0.022 15.0 0.1 0.062 13.5 0.1 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain Rio2_N PF09202.11 gi|330507900|ref|YP_004384328.1| - 0.076 13.2 0.0 0.27 11.5 0.0 2.0 1 0 0 1 1 1 0 Rio2, N-terminal DMA PF03474.14 gi|330507900|ref|YP_004384328.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 DMRTA motif HTH_12 PF08461.10 gi|330507900|ref|YP_004384328.1| - 0.53 10.3 4.8 1.1 9.2 0.2 3.3 3 1 0 3 3 3 0 Ribonuclease R winged-helix domain MutS_III PF05192.18 gi|330507900|ref|YP_004384328.1| - 0.71 10.1 5.7 1.1 9.5 5.6 1.4 1 1 0 1 1 1 0 MutS domain III MTH865 PF07747.11 gi|330507901|ref|YP_004384329.1| - 1.1e-30 105.2 0.2 1.2e-30 105.1 0.2 1.0 1 0 0 1 1 1 1 MTH865-like family Putative_PNPOx PF01243.20 gi|330507902|ref|YP_004384330.1| - 1.4e-15 57.2 0.0 1.8e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.7 gi|330507902|ref|YP_004384330.1| - 0.064 13.9 0.0 0.087 13.4 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DUF2099 PF09872.9 gi|330507903|ref|YP_004384331.1| - 3.5e-95 318.0 5.8 4.1e-95 317.9 5.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) FrhB_FdhB_N PF04422.13 gi|330507903|ref|YP_004384331.1| - 0.098 12.8 0.5 0.36 11.0 0.2 2.0 2 0 0 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Ribosomal_L5 PF00281.19 gi|330507903|ref|YP_004384331.1| - 0.11 12.8 0.1 0.42 11.0 0.1 2.0 1 0 0 1 1 1 0 Ribosomal protein L5 DUF4277 PF14104.6 gi|330507904|ref|YP_004384332.1| - 1.1e-40 138.3 0.0 2.4e-40 137.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|330507904|ref|YP_004384332.1| - 1.3e-12 47.9 0.1 5.8e-12 45.7 0.1 1.8 1 1 0 1 1 1 1 Transposase DDE domain CdhC PF03598.15 gi|330507905|ref|YP_004384333.1| - 7.8e-57 191.5 0.1 1.4e-56 190.7 0.1 1.4 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit MarR_2 PF12802.7 gi|330507905|ref|YP_004384333.1| - 0.035 14.0 0.0 0.065 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF1420 PF07220.11 gi|330507905|ref|YP_004384333.1| - 0.091 11.3 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1420) DUF772 PF05598.11 gi|330507907|ref|YP_004384335.1| - 3.7e-22 78.1 0.1 5.4e-22 77.6 0.1 1.2 1 0 0 1 1 1 1 Transposase domain (DUF772) Myb_DNA-bind_4 PF13837.6 gi|330507907|ref|YP_004384335.1| - 0.038 14.4 0.1 0.065 13.6 0.1 1.4 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain Metallophos PF00149.28 gi|330507910|ref|YP_004384338.1| - 0.0067 16.9 0.0 0.0093 16.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase PhoD PF09423.10 gi|330507910|ref|YP_004384338.1| - 0.022 13.8 0.0 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 PhoD-like phosphatase dCMP_cyt_deam_1 PF00383.23 gi|330507911|ref|YP_004384339.1| - 1.2e-29 102.2 2.6 1.6e-29 101.8 2.6 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|330507911|ref|YP_004384339.1| - 2.5e-18 66.2 1.2 3.3e-18 65.8 1.2 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|330507911|ref|YP_004384339.1| - 0.0013 18.8 2.1 0.0027 17.8 2.0 1.6 1 1 1 2 2 2 1 Bd3614-like deaminase APOBEC_N PF08210.11 gi|330507911|ref|YP_004384339.1| - 0.013 15.4 0.8 0.018 15.0 0.8 1.4 1 1 0 1 1 1 0 APOBEC-like N-terminal domain zf-C3HC4 PF00097.25 gi|330507911|ref|YP_004384339.1| - 0.056 13.3 2.4 0.16 11.9 2.4 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) APOBEC3 PF18771.1 gi|330507911|ref|YP_004384339.1| - 0.086 13.0 0.3 0.12 12.5 0.3 1.3 1 0 0 1 1 1 0 APOBEC3 NAD1 PF18778.1 gi|330507911|ref|YP_004384339.1| - 0.11 12.5 0.9 0.18 11.9 0.9 1.4 1 1 0 1 1 1 0 Novel AID APOBEC clade 1 SNAD4 PF18750.1 gi|330507911|ref|YP_004384339.1| - 0.14 12.3 0.8 0.34 11.1 0.8 1.7 1 1 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 zf-C2H2_jaz PF12171.8 gi|330507911|ref|YP_004384339.1| - 0.2 12.0 0.7 0.38 11.1 0.0 1.9 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding tRNA-synt_1f PF01921.18 gi|330507912|ref|YP_004384340.1| - 1.1e-121 406.2 0.0 1.5e-121 405.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|330507912|ref|YP_004384340.1| - 6.5e-06 25.1 0.0 0.0025 16.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|330507912|ref|YP_004384340.1| - 0.0054 16.1 0.0 0.97 8.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain TF_Zn_Ribbon PF08271.12 gi|330507912|ref|YP_004384340.1| - 0.19 11.3 1.8 0.38 10.3 1.8 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Nuc_deoxyrib_tr PF05014.15 gi|330507913|ref|YP_004384341.1| - 1.4e-17 63.9 0.0 1.7e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|330507913|ref|YP_004384341.1| - 1.8e-11 44.3 0.0 2.3e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like DUF3670 PF12419.8 gi|330507913|ref|YP_004384341.1| - 0.055 13.3 0.0 0.089 12.6 0.0 1.3 1 0 0 1 1 1 0 SNF2 Helicase protein Metallophos PF00149.28 gi|330507914|ref|YP_004384342.1| - 6.8e-06 26.7 0.0 8.2e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|330507914|ref|YP_004384342.1| - 0.00033 20.9 0.0 0.00045 20.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Pribosyltran PF00156.27 gi|330507915|ref|YP_004384343.1| - 1.8e-08 34.0 0.0 2.4e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|330507915|ref|YP_004384343.1| - 0.0064 16.0 0.0 0.0082 15.6 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF11 PF01345.18 gi|330507916|ref|YP_004384344.1| - 0.017 15.4 3.1 0.044 14.1 3.1 1.9 1 1 0 1 1 1 0 Domain of unknown function DUF11 Met_10 PF02475.16 gi|330507918|ref|YP_004384346.1| - 2.6e-61 206.9 0.0 3.6e-61 206.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|330507918|ref|YP_004384346.1| - 0.00033 20.5 0.6 0.0016 18.3 0.0 2.4 3 0 0 3 3 3 1 tRNA methyltransferase 5 N-terminal domain MTS PF05175.14 gi|330507918|ref|YP_004384346.1| - 0.0007 19.2 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|330507918|ref|YP_004384346.1| - 0.0044 17.0 0.0 0.011 15.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|330507918|ref|YP_004384346.1| - 0.006 16.2 0.0 0.0088 15.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|330507918|ref|YP_004384346.1| - 0.032 14.9 0.0 0.071 13.8 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|330507918|ref|YP_004384346.1| - 0.046 13.4 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.11 gi|330507918|ref|YP_004384346.1| - 0.17 10.8 0.0 0.27 10.2 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.17 gi|330507918|ref|YP_004384346.1| - 0.2 10.9 0.0 0.27 10.5 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase HSP20 PF00011.21 gi|330507920|ref|YP_004384348.1| - 1.1e-11 44.8 3.2 3.6e-10 39.9 3.2 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|330507920|ref|YP_004384348.1| - 2.5e-07 30.1 0.1 3.5e-07 29.7 0.1 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA FKBP26_C PF18046.1 gi|330507920|ref|YP_004384348.1| - 6.7e-05 22.9 3.4 0.0017 18.4 1.8 2.2 1 1 1 2 2 2 1 FKBP26_C-terminal PIH1_CS PF18201.1 gi|330507920|ref|YP_004384348.1| - 0.00026 21.3 0.1 0.00036 20.9 0.1 1.2 1 0 0 1 1 1 1 PIH1 CS-like domain CS PF04969.16 gi|330507920|ref|YP_004384348.1| - 0.023 15.7 1.2 0.04 14.9 1.2 1.4 1 0 0 1 1 1 0 CS domain HMA PF00403.26 gi|330507920|ref|YP_004384348.1| - 0.066 13.7 1.5 0.22 12.0 0.8 1.9 1 1 1 2 2 2 0 Heavy-metal-associated domain HGTP_anticodon PF03129.20 gi|330507921|ref|YP_004384349.1| - 8.2e-24 83.6 0.1 2.5e-23 82.0 0.1 1.9 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|330507921|ref|YP_004384349.1| - 1.4e-09 38.2 0.0 5e-09 36.4 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Zn-ribbon_8 PF09723.10 gi|330507921|ref|YP_004384349.1| - 0.024 14.8 0.7 0.52 10.5 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2 PF00096.26 gi|330507921|ref|YP_004384349.1| - 0.11 13.0 0.6 1.4 9.6 0.1 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|330507921|ref|YP_004384349.1| - 0.13 13.2 0.3 29 5.8 0.0 2.6 2 0 0 2 2 2 0 C2H2-type zinc finger ThrE PF06738.12 gi|330507922|ref|YP_004384350.1| - 2 7.7 10.2 1.4 8.2 3.2 2.2 2 0 0 2 2 2 0 Putative threonine/serine exporter DUF1772 PF08592.11 gi|330507922|ref|YP_004384350.1| - 8.4 6.7 8.0 21 5.4 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) ADK PF00406.22 gi|330507923|ref|YP_004384351.1| - 1.2e-60 204.0 0.0 1.4e-60 203.8 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|330507923|ref|YP_004384351.1| - 1.3e-28 100.1 0.2 3.9e-28 98.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|330507923|ref|YP_004384351.1| - 2.3e-17 62.6 2.4 8.4e-17 60.9 1.8 2.1 2 0 0 2 2 2 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|330507923|ref|YP_004384351.1| - 1.9e-06 28.5 0.0 3.5e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain Hydin_ADK PF17213.3 gi|330507923|ref|YP_004384351.1| - 5.4e-05 23.6 0.1 0.048 13.9 0.0 2.2 1 1 1 2 2 2 2 Hydin Adenylate kinase-like domain AAA_33 PF13671.6 gi|330507923|ref|YP_004384351.1| - 0.00041 20.5 0.0 0.0012 19.0 0.0 1.7 2 1 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 gi|330507923|ref|YP_004384351.1| - 0.0024 17.7 0.0 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase AAA PF00004.29 gi|330507923|ref|YP_004384351.1| - 0.0026 18.2 0.0 0.0046 17.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|330507923|ref|YP_004384351.1| - 0.019 14.7 0.0 0.62 9.7 0.0 2.2 1 1 0 1 1 1 0 Thymidylate kinase RuvB_N PF05496.12 gi|330507923|ref|YP_004384351.1| - 0.027 14.2 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ABC_tran PF00005.27 gi|330507923|ref|YP_004384351.1| - 0.053 14.0 0.1 0.053 14.0 0.1 1.4 1 1 0 1 1 1 0 ABC transporter Pox_A3L PF05288.11 gi|330507923|ref|YP_004384351.1| - 0.061 13.3 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Poxvirus A3L Protein NTPase_1 PF03266.15 gi|330507923|ref|YP_004384351.1| - 0.067 13.1 0.2 0.14 12.0 0.1 1.6 2 0 0 2 2 2 0 NTPase AAA_24 PF13479.6 gi|330507923|ref|YP_004384351.1| - 0.15 11.8 0.3 0.54 9.9 0.0 2.0 3 0 0 3 3 3 0 AAA domain AAA_5 PF07728.14 gi|330507923|ref|YP_004384351.1| - 0.18 11.8 0.0 0.45 10.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AA_kinase PF00696.28 gi|330507925|ref|YP_004384353.1| - 5.8e-29 101.4 4.0 6.2e-28 98.0 4.0 1.9 1 1 0 1 1 1 1 Amino acid kinase family HrcA_DNA-bdg PF03444.15 gi|330507926|ref|YP_004384354.1| - 5.5e-36 122.1 0.1 1.1e-35 121.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|330507926|ref|YP_004384354.1| - 9.1e-15 54.9 0.0 1.2e-08 35.3 0.0 2.9 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.20 gi|330507926|ref|YP_004384354.1| - 1.3e-07 31.9 0.1 3.4e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|330507926|ref|YP_004384354.1| - 7.4e-07 29.0 0.1 7.6e-06 25.8 0.1 2.3 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|330507926|ref|YP_004384354.1| - 0.001 19.1 0.0 0.0029 17.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|330507926|ref|YP_004384354.1| - 0.0074 16.2 0.0 0.038 13.9 0.0 2.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|330507926|ref|YP_004384354.1| - 0.038 13.9 0.0 0.3 11.0 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|330507926|ref|YP_004384354.1| - 0.17 11.6 0.1 1 9.1 0.0 2.3 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_38 PF13936.6 gi|330507926|ref|YP_004384354.1| - 0.19 11.5 1.5 0.35 10.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|330507927|ref|YP_004384355.1| - 6.2e-18 65.7 0.0 9.8e-18 65.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|330507927|ref|YP_004384355.1| - 1.5e-06 28.6 0.3 3.3e-06 27.5 0.3 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|330507927|ref|YP_004384355.1| - 0.00012 22.4 0.0 0.00019 21.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330507927|ref|YP_004384355.1| - 0.06 13.5 0.0 0.099 12.8 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain PRA-CH PF01502.18 gi|330507928|ref|YP_004384356.1| - 1.4e-36 124.2 0.1 1.8e-36 123.8 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Nre_N PF04894.12 gi|330507929|ref|YP_004384357.1| - 2.7e-88 296.3 0.0 4.1e-88 295.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|330507929|ref|YP_004384357.1| - 1.8e-35 121.2 0.0 2.6e-35 120.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal E1-E2_ATPase PF00122.20 gi|330507930|ref|YP_004384358.1| - 5.8e-58 195.4 13.8 1.9e-57 193.7 2.8 3.1 3 0 0 3 3 3 2 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|330507930|ref|YP_004384358.1| - 3.6e-44 150.6 3.7 3.6e-44 150.6 3.7 2.8 3 1 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|330507930|ref|YP_004384358.1| - 1.6e-23 84.1 2.9 4.7e-23 82.6 2.9 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|330507930|ref|YP_004384358.1| - 2.4e-18 66.0 0.0 5.3e-18 64.9 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|330507930|ref|YP_004384358.1| - 1.2e-17 63.3 0.4 4e-17 61.7 0.0 2.1 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus HAD PF12710.7 gi|330507930|ref|YP_004384358.1| - 3.9e-06 27.4 0.1 9e-06 26.2 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|330507930|ref|YP_004384358.1| - 2.8e-05 24.0 1.9 0.00017 21.5 0.8 2.5 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase tRNA-synt_2d PF01409.20 gi|330507931|ref|YP_004384359.1| - 3.4e-93 311.6 0.0 4.3e-93 311.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|330507931|ref|YP_004384359.1| - 5.7e-11 42.3 0.0 4.4e-07 29.5 0.0 2.7 3 0 0 3 3 3 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|330507931|ref|YP_004384359.1| - 0.00026 20.2 0.5 0.22 10.5 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_45 PF14947.6 gi|330507931|ref|YP_004384359.1| - 0.00031 20.7 0.0 0.17 11.9 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix PheRS_DBD3 PF18553.1 gi|330507931|ref|YP_004384359.1| - 0.02 15.2 0.8 0.16 12.3 0.1 2.8 3 0 0 3 3 3 0 PheRS DNA binding domain 3 SinI PF08671.10 gi|330507931|ref|YP_004384359.1| - 0.1 12.4 0.7 31 4.5 0.1 3.7 3 0 0 3 3 3 0 Anti-repressor SinI DUF4364 PF14277.6 gi|330507931|ref|YP_004384359.1| - 0.11 12.3 0.0 11 5.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|330507931|ref|YP_004384359.1| - 0.13 12.7 0.0 3.2 8.3 0.0 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain tRNA_synthFbeta PF17759.1 gi|330507932|ref|YP_004384360.1| - 4.7e-37 127.5 0.0 7e-37 126.9 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|330507932|ref|YP_004384360.1| - 8.7e-16 58.0 0.0 2.9e-14 53.1 0.0 2.9 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|330507932|ref|YP_004384360.1| - 6.8e-12 45.4 0.0 1.1e-11 44.7 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|330507932|ref|YP_004384360.1| - 0.0067 16.6 0.0 0.53 10.5 0.0 2.7 2 0 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain CBS PF00571.28 gi|330507933|ref|YP_004384361.1| - 5.1e-22 78.1 1.9 1.4e-13 51.1 0.3 2.1 2 0 0 2 2 2 2 CBS domain Phage_integrase PF00589.22 gi|330507934|ref|YP_004384362.1| - 2.7e-26 92.4 0.0 3.6e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|330507934|ref|YP_004384362.1| - 6.7e-05 23.3 0.3 0.3 11.6 0.0 2.8 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|330507934|ref|YP_004384362.1| - 0.00021 21.5 0.1 0.013 15.8 0.0 2.8 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|330507934|ref|YP_004384362.1| - 0.014 15.7 0.0 2.8 8.3 0.1 2.9 2 1 0 2 2 2 0 Phage integrase SAM-like domain UPF0047 PF01894.17 gi|330507934|ref|YP_004384362.1| - 0.029 14.5 0.0 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0047 SWIM PF04434.17 gi|330507935|ref|YP_004384363.1| - 0.0043 16.7 3.0 0.008 15.8 3.0 1.5 1 1 0 1 1 1 1 SWIM zinc finger HTH_53 PF18606.1 gi|330507936|ref|YP_004384364.1| - 0.0042 16.7 0.3 0.0076 15.9 0.3 1.4 1 0 0 1 1 1 1 Zap helix turn helix N-terminal domain Uso1_p115_head PF04869.14 gi|330507936|ref|YP_004384364.1| - 0.014 14.6 0.1 0.018 14.2 0.1 1.2 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, head region P22_CoatProtein PF11651.8 gi|330507937|ref|YP_004384365.1| - 2.3e-11 43.0 0.4 2.9e-11 42.6 0.4 1.1 1 0 0 1 1 1 1 P22 coat protein - gene protein 5 Big_3_5 PF16640.5 gi|330507940|ref|YP_004384368.1| - 0.068 13.4 2.3 0.19 12.0 2.3 1.7 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) DUF5070 PF16802.5 gi|330507941|ref|YP_004384369.1| - 0.016 15.2 0.0 0.016 15.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5070) SMRP1 PF15181.6 gi|330507942|ref|YP_004384370.1| - 0.11 12.1 0.0 0.12 12.0 0.0 1.0 1 0 0 1 1 1 0 Spermatid-specific manchette-related protein 1 PDZ_4 PF17816.1 gi|330507942|ref|YP_004384370.1| - 0.15 12.4 0.0 0.19 12.2 0.0 1.1 1 0 0 1 1 1 0 PDZ domain D5_N PF08706.11 gi|330507945|ref|YP_004384373.1| - 7.4e-12 45.8 0.1 2.3e-11 44.2 0.1 1.8 1 0 0 1 1 1 1 D5 N terminal like AAA_22 PF13401.6 gi|330507945|ref|YP_004384373.1| - 0.019 15.2 0.0 0.068 13.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.6 gi|330507945|ref|YP_004384373.1| - 0.02 14.7 0.1 0.039 13.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|330507945|ref|YP_004384373.1| - 0.089 12.6 0.0 0.27 11.0 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain SlpA PF03217.14 gi|330507945|ref|YP_004384373.1| - 0.13 12.9 0.2 0.32 11.6 0.2 1.6 1 0 0 1 1 1 0 Surface later protein A domain AAA PF00004.29 gi|330507945|ref|YP_004384373.1| - 0.17 12.3 0.0 0.34 11.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhetRS_B1 PF18262.1 gi|330507946|ref|YP_004384374.1| - 0.032 14.4 0.2 0.15 12.3 0.0 2.0 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain TPR_20 PF14561.6 gi|330507946|ref|YP_004384374.1| - 0.045 14.1 1.0 0.13 12.6 0.0 2.1 3 0 0 3 3 3 0 Tetratricopeptide repeat Terminase_3 PF04466.13 gi|330507947|ref|YP_004384375.1| - 1.4e-13 50.8 0.0 1.9e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Phage terminase large subunit Terminase_6 PF03237.15 gi|330507947|ref|YP_004384375.1| - 1.2e-10 41.4 0.0 2.1e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Terminase-like family Terminase_6C PF17289.2 gi|330507947|ref|YP_004384375.1| - 6.2e-05 23.1 0.0 0.00013 22.0 0.0 1.6 1 0 0 1 1 1 1 Terminase RNaseH-like domain Terminase_3C PF17288.2 gi|330507947|ref|YP_004384375.1| - 0.00011 22.7 0.2 0.00028 21.3 0.2 1.7 1 1 0 1 1 1 1 Terminase RNAseH like domain Phage_prot_Gp6 PF05133.14 gi|330507948|ref|YP_004384376.1| - 3.4e-14 52.8 0.0 5e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 Phage portal protein, SPP1 Gp6-like Phage_Mu_F PF04233.14 gi|330507949|ref|YP_004384377.1| - 1.3e-15 58.1 0.0 1.7e-15 57.8 0.0 1.1 1 0 0 1 1 1 1 Phage Mu protein F like protein DUF2207 PF09972.9 gi|330507951|ref|YP_004384379.1| - 5.1e-32 111.3 0.0 6.3e-32 111.0 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) DUF4277 PF14104.6 gi|330507952|ref|YP_004384380.1| - 2.9e-41 140.2 0.0 6e-41 139.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|330507952|ref|YP_004384380.1| - 8.1e-12 45.2 0.2 5.7e-11 42.5 0.2 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF2207 PF09972.9 gi|330507953|ref|YP_004384381.1| - 9.6e-30 103.8 0.0 1.4e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) LemA PF04011.12 gi|330507954|ref|YP_004384382.1| - 3.9e-32 111.2 0.2 4.8e-32 110.9 0.2 1.1 1 0 0 1 1 1 1 LemA family DUF948 PF06103.11 gi|330507954|ref|YP_004384382.1| - 0.0062 16.8 0.2 0.098 12.9 0.1 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF948) DUF4330 PF14221.6 gi|330507954|ref|YP_004384382.1| - 0.061 13.5 0.0 0.081 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) SpoIIIAH PF12685.7 gi|330507954|ref|YP_004384382.1| - 0.065 13.1 0.0 0.097 12.5 0.0 1.3 1 1 0 1 1 1 0 SpoIIIAH-like protein EC042_2821 PF18740.1 gi|330507954|ref|YP_004384382.1| - 0.086 12.7 0.1 0.22 11.4 0.0 1.6 2 0 0 2 2 2 0 EC042_2821-lke REase DUF4381 PF14316.6 gi|330507954|ref|YP_004384382.1| - 0.14 12.4 0.1 0.25 11.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) DUF1664 PF07889.12 gi|330507954|ref|YP_004384382.1| - 0.42 10.7 3.5 0.59 10.2 0.2 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF3552 PF12072.8 gi|330507954|ref|YP_004384382.1| - 1.6 8.1 5.8 0.53 9.7 0.6 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) NosD PF05048.13 gi|330507955|ref|YP_004384383.1| - 7.3e-39 133.5 34.4 1.5e-25 89.9 14.8 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|330507955|ref|YP_004384383.1| - 1.5e-30 106.1 44.1 3.6e-18 65.9 25.1 2.4 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|330507955|ref|YP_004384383.1| - 1.1e-07 31.4 17.8 1.1e-05 24.9 5.4 3.6 1 1 2 3 3 3 3 Protein of unknown function (DUF1565) fn3_PAP PF17808.1 gi|330507955|ref|YP_004384383.1| - 0.00069 19.7 0.1 0.46 10.6 0.0 3.7 2 2 2 4 4 4 1 Fn3-like domain from Purple Acid Phosphatase HECW_N PF16562.5 gi|330507955|ref|YP_004384383.1| - 0.04 13.7 0.0 0.66 9.8 0.0 2.4 2 0 0 2 2 2 0 N-terminal domain of E3 ubiquitin-protein ligase HECW1 and 2 DUF389 PF04087.14 gi|330507956|ref|YP_004384384.1| - 7.4e-33 113.6 19.5 4.4e-32 111.1 16.2 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF389) DUF2070 PF09843.9 gi|330507956|ref|YP_004384384.1| - 6.7 4.9 13.6 12 4.1 13.6 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) MarC PF01914.17 gi|330507957|ref|YP_004384385.1| - 2.1e-55 187.3 12.2 2.4e-55 187.1 12.2 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.16 gi|330507957|ref|YP_004384385.1| - 0.00046 19.9 8.8 0.002 17.8 8.6 1.9 1 1 0 1 1 1 1 Integral membrane protein TerC family RseC_MucC PF04246.12 gi|330507957|ref|YP_004384385.1| - 2.4 8.1 8.6 0.37 10.7 0.2 2.6 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DUF2244 PF10003.9 gi|330507957|ref|YP_004384385.1| - 3 7.5 5.1 14 5.3 0.6 2.7 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) DNA_pol_B PF00136.21 gi|330507958|ref|YP_004384386.1| - 1.1e-107 360.6 0.0 1.5e-107 360.2 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|330507958|ref|YP_004384386.1| - 3.2e-50 171.2 0.0 4.6e-50 170.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|330507958|ref|YP_004384386.1| - 9.9e-05 22.4 0.0 0.00024 21.1 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|330507958|ref|YP_004384386.1| - 0.00013 21.7 0.0 0.00024 20.8 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB TBP PF00352.21 gi|330507959|ref|YP_004384387.1| - 1.4e-58 194.8 0.3 1.3e-28 98.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|330507959|ref|YP_004384387.1| - 2.5e-09 37.1 0.0 0.00063 19.8 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Saccharop_dh_N PF04455.12 gi|330507960|ref|YP_004384388.1| - 5.7e-37 126.1 0.1 1.2e-36 125.2 0.1 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|330507960|ref|YP_004384388.1| - 0.0012 18.6 0.2 0.012 15.3 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain ACT_4 PF13291.6 gi|330507960|ref|YP_004384388.1| - 0.044 14.4 0.1 0.1 13.2 0.1 1.6 1 0 0 1 1 1 0 ACT domain DUF5403 PF17395.2 gi|330507960|ref|YP_004384388.1| - 0.16 12.3 0.3 0.39 11.0 0.3 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5403) Lig_C PF18330.1 gi|330507961|ref|YP_004384389.1| - 5.6e-42 142.7 0.1 9e-42 142.0 0.1 1.3 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|330507961|ref|YP_004384389.1| - 9.8e-13 48.7 0.0 1.7e-12 48.0 0.0 1.4 1 0 0 1 1 1 1 RNA ligase LysM PF01476.20 gi|330507961|ref|YP_004384389.1| - 0.064 13.3 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 LysM domain CBS PF00571.28 gi|330507962|ref|YP_004384390.1| - 2e-38 130.6 10.9 4.6e-12 46.2 0.6 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|330507963|ref|YP_004384391.1| - 1.5e-44 150.3 7.5 1.1e-12 48.2 0.2 4.2 4 0 0 4 4 4 4 CBS domain GAF PF01590.26 gi|330507963|ref|YP_004384391.1| - 0.00043 20.9 0.0 2.1 8.9 0.0 3.3 1 1 1 3 3 3 1 GAF domain GAF_2 PF13185.6 gi|330507963|ref|YP_004384391.1| - 0.006 16.9 0.1 1.8 8.8 0.0 3.0 2 1 1 3 3 3 1 GAF domain GCV_T_C PF08669.11 gi|330507963|ref|YP_004384391.1| - 0.027 14.4 0.2 31 4.6 0.0 3.9 4 0 0 4 4 4 0 Glycine cleavage T-protein C-terminal barrel domain 30K_MP_C_Ter PF11330.8 gi|330507963|ref|YP_004384391.1| - 0.059 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 C-Terminal of 30K viral movement proteins Pyr_redox PF00070.27 gi|330507963|ref|YP_004384391.1| - 0.16 12.6 0.7 0.42 11.2 0.2 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CBS PF00571.28 gi|330507964|ref|YP_004384392.1| - 1.2e-49 166.6 5.8 8.4e-15 55.0 0.1 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|330507965|ref|YP_004384393.1| - 7.6e-44 148.0 12.6 4.6e-12 46.2 0.1 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|330507966|ref|YP_004384394.1| - 6.4e-26 90.6 5.2 2.9e-13 50.0 0.2 2.3 2 0 0 2 2 2 2 CBS domain Beta_elim_lyase PF01212.21 gi|330507966|ref|YP_004384394.1| - 0.024 13.9 0.0 0.025 13.9 0.0 1.1 1 0 0 1 1 1 0 Beta-eliminating lyase RecR PF02132.15 gi|330507966|ref|YP_004384394.1| - 0.1 12.2 0.8 0.33 10.6 0.8 1.9 1 0 0 1 1 1 0 RecR protein DUF1335 PF07056.11 gi|330507966|ref|YP_004384394.1| - 0.17 12.0 0.0 0.46 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1335) MoCF_biosynth PF00994.24 gi|330507967|ref|YP_004384395.1| - 4.7e-28 97.7 0.0 5.7e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF1786 PF08735.10 gi|330507968|ref|YP_004384396.1| - 1.4e-87 293.2 0.0 1.6e-87 293.0 0.0 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) FtsA PF14450.6 gi|330507968|ref|YP_004384396.1| - 0.091 13.2 0.1 7.5 7.0 0.0 2.5 2 0 0 2 2 2 0 Cell division protein FtsA Pkinase PF00069.25 gi|330507969|ref|YP_004384397.1| - 3.2e-06 26.7 0.0 4.8e-06 26.1 0.0 1.3 1 1 0 1 1 1 1 Protein kinase domain RIO1 PF01163.22 gi|330507969|ref|YP_004384397.1| - 7.9e-06 25.6 0.0 1.2e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|330507969|ref|YP_004384397.1| - 3.8e-05 23.1 0.0 5.5e-05 22.6 0.0 1.4 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|330507969|ref|YP_004384397.1| - 0.0002 21.4 0.2 0.0063 16.5 0.2 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family WaaY PF06176.11 gi|330507969|ref|YP_004384397.1| - 0.0038 16.9 0.1 0.0046 16.6 0.1 1.1 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.20 gi|330507969|ref|YP_004384397.1| - 0.0047 16.5 0.0 0.66 9.5 0.1 2.5 1 1 2 3 3 3 2 Choline/ethanolamine kinase Pkinase_Tyr PF07714.17 gi|330507969|ref|YP_004384397.1| - 0.0071 15.7 0.0 0.008 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Alba PF01918.21 gi|330507970|ref|YP_004384398.1| - 1.8e-16 59.7 0.2 2.3e-16 59.4 0.2 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|330507970|ref|YP_004384398.1| - 0.05 13.6 0.1 0.077 12.9 0.1 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Formyl_trans_N PF00551.19 gi|330507971|ref|YP_004384399.1| - 9.7e-47 159.0 0.0 1.1e-46 158.8 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase HIT PF01230.23 gi|330507972|ref|YP_004384400.1| - 1.8e-11 44.6 0.0 2.5e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|330507972|ref|YP_004384400.1| - 2e-05 24.4 0.0 3.8e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|330507972|ref|YP_004384400.1| - 0.00017 22.0 0.0 0.00025 21.5 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding MENTAL PF10457.9 gi|330507974|ref|YP_004384402.1| - 2.3 8.0 9.6 5.3 6.8 9.3 1.9 1 1 0 1 1 1 0 Cholesterol-capturing domain ABC_tran PF00005.27 gi|330507975|ref|YP_004384403.1| - 2e-38 132.0 0.0 1e-20 74.7 0.0 2.4 2 0 0 2 2 2 2 ABC transporter RLI PF04068.15 gi|330507975|ref|YP_004384403.1| - 3.5e-13 49.1 2.4 7.7e-13 48.0 2.4 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|330507975|ref|YP_004384403.1| - 1e-12 48.0 6.1 9.4e-05 21.9 0.0 4.7 5 0 0 5 5 5 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|330507975|ref|YP_004384403.1| - 5.4e-10 39.6 9.6 0.0042 16.9 0.6 4.2 2 2 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|330507975|ref|YP_004384403.1| - 9.8e-08 31.5 3.1 9.8e-08 31.5 3.1 2.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330507975|ref|YP_004384403.1| - 2.3e-06 27.4 11.7 5.8e-06 26.2 1.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_29 PF13555.6 gi|330507975|ref|YP_004384403.1| - 6.5e-05 22.6 0.4 0.18 11.6 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|330507975|ref|YP_004384403.1| - 0.00011 22.1 0.1 0.32 10.9 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase Fer4_9 PF13187.6 gi|330507975|ref|YP_004384403.1| - 0.00012 22.1 15.6 0.0017 18.4 1.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Rad17 PF03215.15 gi|330507975|ref|YP_004384403.1| - 0.00015 21.8 0.0 0.69 9.8 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_16 PF13191.6 gi|330507975|ref|YP_004384403.1| - 0.00027 21.3 0.7 0.14 12.6 0.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain Fer4_7 PF12838.7 gi|330507975|ref|YP_004384403.1| - 0.00029 21.4 0.4 0.00029 21.4 0.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain AAA_23 PF13476.6 gi|330507975|ref|YP_004384403.1| - 0.00043 20.8 0.4 1.3 9.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|330507975|ref|YP_004384403.1| - 0.00058 19.7 0.0 1.3 8.6 0.0 3.2 3 0 0 3 3 3 1 AAA ATPase domain Fer4_21 PF14697.6 gi|330507975|ref|YP_004384403.1| - 0.00072 19.6 6.4 0.0012 19.0 6.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330507975|ref|YP_004384403.1| - 0.0043 17.1 1.7 0.0043 17.1 1.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330507975|ref|YP_004384403.1| - 0.0057 16.7 1.0 0.0057 16.7 1.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain MeaB PF03308.16 gi|330507975|ref|YP_004384403.1| - 0.0086 15.1 1.1 1.6 7.6 0.1 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_16 PF13484.6 gi|330507975|ref|YP_004384403.1| - 0.014 16.3 0.4 0.014 16.3 0.4 2.2 2 0 0 2 2 1 0 4Fe-4S double cluster binding domain AAA_24 PF13479.6 gi|330507975|ref|YP_004384403.1| - 0.015 15.0 0.7 2.7 7.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|330507975|ref|YP_004384403.1| - 0.015 15.5 0.1 8.7 6.7 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.22 gi|330507975|ref|YP_004384403.1| - 0.023 15.1 0.2 6.2 7.3 0.1 2.4 2 0 0 2 2 2 0 RNA helicase Cm_res_leader PF08077.11 gi|330507975|ref|YP_004384403.1| - 0.041 13.9 0.5 1.9 8.9 0.1 3.0 2 0 0 2 2 2 0 Chloramphenicol resistance gene leader peptide Fer4_17 PF13534.6 gi|330507975|ref|YP_004384403.1| - 0.049 14.2 0.5 0.049 14.2 0.5 2.2 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330507975|ref|YP_004384403.1| - 0.098 13.2 13.0 0.069 13.7 3.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA PF00004.29 gi|330507975|ref|YP_004384403.1| - 0.13 12.7 0.7 22 5.5 0.1 3.0 4 0 0 4 4 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|330507975|ref|YP_004384403.1| - 0.18 11.5 0.9 21 4.7 0.2 2.8 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|330507975|ref|YP_004384403.1| - 0.2 11.7 1.0 16 5.6 0.0 3.3 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|330507975|ref|YP_004384403.1| - 0.21 12.1 2.2 66 4.1 0.0 3.4 3 1 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|330507975|ref|YP_004384403.1| - 0.33 11.2 2.1 26 5.0 0.1 3.4 4 0 0 4 4 4 0 AAA domain MMR_HSR1 PF01926.23 gi|330507975|ref|YP_004384403.1| - 0.47 10.5 1.4 10 6.2 0.2 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|330507975|ref|YP_004384403.1| - 0.48 10.0 2.9 22 4.5 0.0 3.3 4 0 0 4 4 4 0 AAA domain NTPase_1 PF03266.15 gi|330507975|ref|YP_004384403.1| - 2.4 8.0 4.3 70 3.3 0.2 3.6 4 0 0 4 4 4 0 NTPase L6_membrane PF05805.12 gi|330507976|ref|YP_004384404.1| - 0.75 9.3 2.8 14 5.1 0.1 2.1 1 1 1 2 2 2 0 L6 membrane protein PIN_6 PF17146.4 gi|330507977|ref|YP_004384405.1| - 4.3e-14 52.8 0.2 6.3e-14 52.3 0.2 1.2 1 0 0 1 1 1 1 PIN domain of ribonuclease HypA PF01155.19 gi|330507977|ref|YP_004384405.1| - 0.00093 19.2 0.1 0.0012 18.8 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PIN_5 PF08745.11 gi|330507977|ref|YP_004384405.1| - 0.0028 17.1 0.2 0.0064 15.9 0.1 1.5 1 1 0 1 1 1 1 PINc domain ribonuclease PIN PF01850.21 gi|330507977|ref|YP_004384405.1| - 0.004 17.7 1.3 0.0056 17.2 1.3 1.2 1 0 0 1 1 1 1 PIN domain Prok-RING_1 PF14446.6 gi|330507977|ref|YP_004384405.1| - 0.0076 16.2 4.5 0.012 15.5 4.5 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.12 gi|330507977|ref|YP_004384405.1| - 0.028 14.4 2.5 0.041 13.9 2.5 1.3 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|330507977|ref|YP_004384405.1| - 0.04 14.0 6.8 0.11 12.6 6.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|330507977|ref|YP_004384405.1| - 0.067 13.2 4.3 0.11 12.5 4.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|330507977|ref|YP_004384405.1| - 0.21 11.8 3.6 0.41 10.9 3.6 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Pribosyltran PF00156.27 gi|330507978|ref|YP_004384406.1| - 7.6e-23 80.8 0.9 1.1e-22 80.3 0.9 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|330507978|ref|YP_004384406.1| - 2.6e-05 23.8 0.1 3.5e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 gi|330507978|ref|YP_004384406.1| - 0.012 15.7 0.1 0.025 14.6 0.1 1.6 2 0 0 2 2 2 0 Phosphoribosyl synthetase-associated domain CBS PF00571.28 gi|330507978|ref|YP_004384406.1| - 0.037 14.5 0.1 0.09 13.2 0.1 1.7 1 0 0 1 1 1 0 CBS domain PRTase_2 PF15609.6 gi|330507978|ref|YP_004384406.1| - 0.037 13.5 0.5 0.11 11.9 0.2 1.7 1 1 1 2 2 2 0 Phosphoribosyl transferase GerE PF00196.19 gi|330507978|ref|YP_004384406.1| - 0.056 13.0 0.0 0.18 11.3 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Tautomerase PF01361.21 gi|330507978|ref|YP_004384406.1| - 0.11 12.4 0.0 0.36 10.8 0.0 1.9 1 0 0 1 1 1 0 Tautomerase enzyme tRNA-synt_2c PF01411.19 gi|330507979|ref|YP_004384407.1| - 2.7e-120 402.5 0.0 4e-120 401.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|330507979|ref|YP_004384407.1| - 1.3e-20 74.2 6.4 2.5e-20 73.3 6.4 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|330507979|ref|YP_004384407.1| - 2.8e-14 52.9 1.0 6.3e-14 51.8 1.0 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain PhaP_Bmeg PF09602.10 gi|330507979|ref|YP_004384407.1| - 0.0099 15.8 0.6 1.7 8.5 0.1 2.6 3 0 0 3 3 3 2 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF433 PF04255.14 gi|330507980|ref|YP_004384408.1| - 4.3e-23 80.9 0.1 7e-23 80.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF5615 PF18480.1 gi|330507981|ref|YP_004384409.1| - 2.5e-22 78.4 0.0 3.6e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) Mut7-C PF01927.16 gi|330507981|ref|YP_004384409.1| - 3.3e-05 24.0 0.0 3.3e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain PIN_10 PF18478.1 gi|330507981|ref|YP_004384409.1| - 0.00013 22.1 0.1 0.00023 21.3 0.1 1.4 1 0 0 1 1 1 1 PIN like domain ABC_tran PF00005.27 gi|330507982|ref|YP_004384410.1| - 1.2e-31 110.0 0.0 1.7e-31 109.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330507982|ref|YP_004384410.1| - 1e-10 41.9 0.0 3.6e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330507982|ref|YP_004384410.1| - 5.3e-09 35.8 0.0 2.2e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|330507982|ref|YP_004384410.1| - 0.00012 21.7 0.0 0.00021 21.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|330507982|ref|YP_004384410.1| - 0.00028 20.9 0.2 0.088 12.7 0.1 2.2 2 0 0 2 2 2 1 NTPase RsgA_GTPase PF03193.16 gi|330507982|ref|YP_004384410.1| - 0.00043 20.2 0.1 0.0011 18.8 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|330507982|ref|YP_004384410.1| - 0.0017 18.1 0.5 0.63 9.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|330507982|ref|YP_004384410.1| - 0.0043 17.3 0.6 0.078 13.3 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|330507982|ref|YP_004384410.1| - 0.006 17.0 0.1 0.0095 16.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|330507982|ref|YP_004384410.1| - 0.014 15.6 0.0 0.036 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|330507982|ref|YP_004384410.1| - 0.016 15.8 0.4 0.25 11.9 0.1 2.2 1 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|330507982|ref|YP_004384410.1| - 0.021 14.6 0.0 0.29 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|330507982|ref|YP_004384410.1| - 0.021 14.6 0.0 0.79 9.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|330507982|ref|YP_004384410.1| - 0.025 14.3 0.0 0.085 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|330507982|ref|YP_004384410.1| - 0.032 13.8 0.0 0.076 12.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|330507982|ref|YP_004384410.1| - 0.036 14.6 0.3 0.071 13.6 0.3 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|330507982|ref|YP_004384410.1| - 0.042 13.9 0.0 0.14 12.2 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase KDGP_aldolase PF07071.11 gi|330507982|ref|YP_004384410.1| - 0.043 13.6 0.0 0.059 13.2 0.0 1.1 1 0 0 1 1 1 0 KDGP aldolase G-alpha PF00503.20 gi|330507982|ref|YP_004384410.1| - 0.066 12.4 0.0 0.074 12.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit NB-ARC PF00931.22 gi|330507982|ref|YP_004384410.1| - 0.12 11.5 0.0 0.37 9.9 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain Gram_pos_anchor PF00746.21 gi|330507983|ref|YP_004384411.1| - 0.0084 16.0 1.0 0.0084 16.0 1.0 2.3 3 0 0 3 3 3 1 LPXTG cell wall anchor motif Wzz PF02706.15 gi|330507983|ref|YP_004384411.1| - 0.18 12.1 0.2 1.8 8.9 0.0 2.3 2 0 0 2 2 2 0 Chain length determinant protein MacB_PCD PF12704.7 gi|330507984|ref|YP_004384412.1| - 8.7e-29 101.3 0.9 8.7e-29 101.3 0.9 2.4 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|330507984|ref|YP_004384412.1| - 2.2e-11 44.0 1.6 2.2e-11 44.0 1.6 3.0 3 0 0 3 3 3 2 FtsX-like permease family Polysacc_synt_3 PF13440.6 gi|330507984|ref|YP_004384412.1| - 0.021 14.1 2.5 0.03 13.5 0.2 2.1 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein DUF166 PF02593.14 gi|330507986|ref|YP_004384414.1| - 3e-68 229.7 0.0 3.5e-68 229.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function Peripla_BP_4 PF13407.6 gi|330507986|ref|YP_004384414.1| - 0.11 12.1 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain Fer4 PF00037.27 gi|330507987|ref|YP_004384415.1| - 5.3e-11 41.9 14.6 9.4e-07 28.4 3.6 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330507987|ref|YP_004384415.1| - 2.5e-07 30.5 2.5 2.5e-07 30.5 2.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330507987|ref|YP_004384415.1| - 1.5e-06 28.2 5.7 1.5e-06 28.2 5.7 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330507987|ref|YP_004384415.1| - 1.6e-06 28.6 6.1 5.7e-06 26.8 6.1 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330507987|ref|YP_004384415.1| - 4.3e-06 27.6 4.7 0.052 14.5 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|330507987|ref|YP_004384415.1| - 6.5e-06 26.2 3.8 1.9e-05 24.7 3.8 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330507987|ref|YP_004384415.1| - 2.1e-05 24.6 5.8 2.1e-05 24.6 5.8 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330507987|ref|YP_004384415.1| - 0.00049 20.0 1.6 0.00049 20.0 1.6 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330507987|ref|YP_004384415.1| - 0.0034 17.8 2.0 0.0034 17.8 2.0 3.2 4 0 0 4 4 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330507987|ref|YP_004384415.1| - 0.007 16.9 2.7 0.96 10.0 1.0 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330507987|ref|YP_004384415.1| - 0.0082 16.9 13.3 0.026 15.2 7.9 3.0 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|330507987|ref|YP_004384415.1| - 1.4 9.8 7.7 1.7 9.6 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330507987|ref|YP_004384415.1| - 1.7 9.1 9.2 2.8 8.4 1.7 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330507987|ref|YP_004384415.1| - 2.4 9.3 18.4 0.92 10.6 5.5 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Prismane PF03063.20 gi|330507988|ref|YP_004384416.1| - 9.2e-122 407.3 0.0 1.9e-102 343.6 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family HxlR PF01638.17 gi|330507989|ref|YP_004384417.1| - 2.4e-22 78.6 1.1 2.8e-22 78.4 1.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|330507989|ref|YP_004384417.1| - 0.0017 18.4 0.1 0.0028 17.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.14 gi|330507989|ref|YP_004384417.1| - 0.0038 17.2 0.0 0.0051 16.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_12 PF08461.10 gi|330507989|ref|YP_004384417.1| - 0.01 15.7 0.1 0.023 14.6 0.1 1.7 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_34 PF13601.6 gi|330507989|ref|YP_004384417.1| - 0.011 15.8 0.1 0.015 15.5 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|330507989|ref|YP_004384417.1| - 0.015 15.2 0.1 0.058 13.3 0.1 1.9 1 1 1 2 2 2 0 MarR family DUF1495 PF07381.11 gi|330507989|ref|YP_004384417.1| - 0.039 13.8 0.0 0.053 13.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.6 gi|330507989|ref|YP_004384417.1| - 0.049 13.2 0.1 0.11 12.1 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|330507989|ref|YP_004384417.1| - 0.066 13.2 0.2 0.17 11.9 0.2 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix OrfB_IS605 PF01385.19 gi|330507990|ref|YP_004384418.1| - 3.6e-07 30.4 0.5 3.6e-07 30.4 0.5 1.9 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|330507990|ref|YP_004384418.1| - 1.4e-05 25.0 0.0 5.7e-05 22.9 0.0 2.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Methyltransf_25 PF13649.6 gi|330507992|ref|YP_004384420.1| - 2.1e-13 50.8 0.0 3.5e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330507992|ref|YP_004384420.1| - 3.5e-11 43.6 0.0 6.1e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330507992|ref|YP_004384420.1| - 2.1e-10 40.6 0.0 2.7e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|330507992|ref|YP_004384420.1| - 3.9e-10 39.5 0.0 5.5e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.12 gi|330507992|ref|YP_004384420.1| - 3.7e-08 34.0 0.0 6.3e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330507992|ref|YP_004384420.1| - 9.2e-08 31.7 0.0 1.3e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|330507992|ref|YP_004384420.1| - 5.3e-06 26.3 0.0 1.3e-05 25.0 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|330507992|ref|YP_004384420.1| - 1.2e-05 25.3 0.0 1.8e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330507992|ref|YP_004384420.1| - 4.8e-05 23.2 0.0 6.1e-05 22.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|330507992|ref|YP_004384420.1| - 0.0011 18.6 0.0 0.0027 17.3 0.0 1.7 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Peptidase_M9 PF01752.17 gi|330507992|ref|YP_004384420.1| - 0.0031 16.8 2.9 0.0047 16.2 2.9 1.2 1 0 0 1 1 1 1 Collagenase TrmK PF04816.12 gi|330507992|ref|YP_004384420.1| - 0.036 13.6 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase TPR_1 PF00515.28 gi|330507994|ref|YP_004384422.1| - 4.9e-69 225.5 21.0 1.3e-10 40.6 0.4 8.0 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330507994|ref|YP_004384422.1| - 4e-56 182.7 18.2 8.4e-08 31.8 0.4 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330507994|ref|YP_004384422.1| - 3.8e-54 180.1 24.7 5.5e-12 45.2 0.7 7.2 2 1 5 7 7 7 7 TPR repeat TPR_8 PF13181.6 gi|330507994|ref|YP_004384422.1| - 1.1e-50 165.6 18.3 5.6e-08 32.4 0.3 8.2 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330507994|ref|YP_004384422.1| - 3.6e-44 146.0 12.3 7.2e-06 26.0 0.0 7.5 8 0 0 8 8 7 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330507994|ref|YP_004384422.1| - 4e-43 145.8 3.8 2.4e-12 47.3 1.2 5.0 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330507994|ref|YP_004384422.1| - 9.7e-37 122.5 2.9 5.2e-05 23.7 0.1 7.4 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330507994|ref|YP_004384422.1| - 3.8e-31 107.2 6.4 9.8e-09 35.4 0.2 6.3 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330507994|ref|YP_004384422.1| - 4.4e-23 81.6 6.0 1.2e-06 28.9 0.0 4.9 1 1 4 6 6 6 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330507994|ref|YP_004384422.1| - 4e-21 74.9 0.0 4.6e-06 26.7 0.1 4.5 4 1 0 5 5 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330507994|ref|YP_004384422.1| - 1.7e-18 65.9 5.8 0.5 11.1 0.0 7.9 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330507994|ref|YP_004384422.1| - 5.4e-18 63.6 3.0 0.05 13.6 0.0 7.5 8 0 0 8 8 8 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330507994|ref|YP_004384422.1| - 3.1e-17 62.6 0.1 1.2e-05 25.4 0.0 4.3 2 1 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|330507994|ref|YP_004384422.1| - 2.8e-12 46.1 13.5 0.062 13.2 0.1 6.9 8 0 0 8 8 7 3 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330507994|ref|YP_004384422.1| - 8.5e-12 45.3 5.4 0.59 10.2 0.0 6.6 3 2 3 6 6 6 3 Domain of Unknown Function (DUF3856) MIT PF04212.18 gi|330507994|ref|YP_004384422.1| - 6.7e-09 35.7 10.0 0.15 12.1 0.1 6.4 7 0 0 7 7 6 2 MIT (microtubule interacting and transport) domain BTAD PF03704.17 gi|330507994|ref|YP_004384422.1| - 5.2e-08 33.4 0.2 0.05 14.0 0.0 3.9 2 1 1 3 3 3 3 Bacterial transcriptional activator domain TPR_21 PF09976.9 gi|330507994|ref|YP_004384422.1| - 1.9e-07 31.0 14.3 0.57 9.9 0.1 6.0 1 1 4 6 6 6 2 Tetratricopeptide repeat-like domain TPR_15 PF13429.6 gi|330507994|ref|YP_004384422.1| - 1.8e-06 27.4 4.0 0.00052 19.3 0.8 3.3 1 1 3 4 4 4 2 Tetratricopeptide repeat NRBF2_MIT PF17169.4 gi|330507994|ref|YP_004384422.1| - 3.2e-05 24.1 6.6 0.39 11.0 0.0 5.6 3 3 2 6 6 6 1 MIT domain of nuclear receptor-binding factor 2 NARP1 PF12569.8 gi|330507994|ref|YP_004384422.1| - 4.3e-05 22.6 3.7 0.57 9.0 0.1 3.9 1 1 2 4 4 4 2 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|330507994|ref|YP_004384422.1| - 0.0001 22.3 0.2 0.6 10.2 0.0 3.7 3 2 1 4 4 4 1 Putative TPR-like repeat Alkyl_sulf_dimr PF14863.6 gi|330507994|ref|YP_004384422.1| - 0.0036 17.7 0.2 2 8.9 0.0 3.0 2 2 1 3 3 3 1 Alkyl sulfatase dimerisation Wzy_C_2 PF11846.8 gi|330507994|ref|YP_004384422.1| - 0.0069 16.3 0.2 10 6.0 0.0 3.9 2 1 1 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal HTH_Bact PF18768.1 gi|330507994|ref|YP_004384422.1| - 0.0073 15.9 0.8 0.92 9.1 0.0 4.1 5 0 0 5 5 4 1 Helix-turn-helix bacterial domain MAS20 PF02064.15 gi|330507994|ref|YP_004384422.1| - 0.0075 16.4 0.0 18 5.5 0.0 4.6 4 1 1 5 5 5 0 MAS20 protein import receptor TPR_3 PF07720.12 gi|330507994|ref|YP_004384422.1| - 0.0085 16.1 11.9 2.3 8.3 0.1 5.6 7 0 0 7 7 5 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|330507994|ref|YP_004384422.1| - 0.014 16.0 1.9 51 4.9 0.0 5.4 6 0 0 6 6 5 0 Tetratricopeptide repeat DUF1510 PF07423.11 gi|330507994|ref|YP_004384422.1| - 0.018 15.2 2.7 8.3 6.6 0.0 4.6 1 1 4 5 5 5 0 Domain of unknown function (DUF1510) FAT PF02259.23 gi|330507994|ref|YP_004384422.1| - 0.027 13.7 6.1 3.8 6.6 0.4 4.3 1 1 2 3 3 3 0 FAT domain TPR_5 PF12688.7 gi|330507994|ref|YP_004384422.1| - 0.061 13.6 0.4 17 5.7 0.0 3.8 3 1 1 4 4 4 0 Tetratrico peptide repeat Fis1_TPR_C PF14853.6 gi|330507994|ref|YP_004384422.1| - 0.069 13.2 0.3 6.5 6.9 0.0 3.6 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat SHNi-TPR PF10516.9 gi|330507994|ref|YP_004384422.1| - 0.09 12.2 1.6 39 3.8 0.1 4.6 6 0 0 6 6 6 0 SHNi-TPR Lambda_Kil PF06301.11 gi|330507994|ref|YP_004384422.1| - 0.2 11.3 0.9 21 4.8 0.1 3.7 5 0 0 5 5 4 0 Bacteriophage lambda Kil protein EVE PF01878.18 gi|330507995|ref|YP_004384423.1| - 2.7e-05 24.2 0.0 5.1e-05 23.3 0.0 1.5 1 1 0 1 1 1 1 EVE domain CRM1_repeat PF18777.1 gi|330507995|ref|YP_004384423.1| - 0.0037 16.7 0.2 0.0094 15.4 0.2 1.7 1 0 0 1 1 1 1 Chromosome region maintenance or exportin repeat ResIII PF04851.15 gi|330507996|ref|YP_004384424.1| - 3.3e-25 89.1 0.0 6.5e-25 88.1 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|330507996|ref|YP_004384424.1| - 0.00014 21.7 0.0 0.0011 18.7 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase HEPN_AbiU2 PF18734.1 gi|330507996|ref|YP_004384424.1| - 0.022 14.3 0.7 1.8 8.1 0.0 3.0 3 0 0 3 3 3 0 AbiU2 ISN1 PF06437.11 gi|330507996|ref|YP_004384424.1| - 0.089 11.7 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 IMP-specific 5'-nucleotidase N6_N4_Mtase PF01555.18 gi|330507997|ref|YP_004384425.1| - 1.2e-40 139.7 0.1 3.3e-40 138.2 0.0 1.7 2 0 0 2 2 2 1 DNA methylase MTS PF05175.14 gi|330507997|ref|YP_004384425.1| - 0.0083 15.7 0.0 0.83 9.2 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase small domain MethyltransfD12 PF02086.15 gi|330507997|ref|YP_004384425.1| - 0.043 13.5 0.0 1.4 8.5 0.0 2.2 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase N6-adenineMlase PF10237.9 gi|330507997|ref|YP_004384425.1| - 0.058 13.2 0.0 0.21 11.4 0.0 2.0 2 0 0 2 2 2 0 Probable N6-adenine methyltransferase Cons_hypoth95 PF03602.15 gi|330507997|ref|YP_004384425.1| - 0.14 11.7 0.1 2.1 8.0 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical protein 95 DUF3800 PF12686.7 gi|330507998|ref|YP_004384426.1| - 2.9e-13 50.5 0.3 3.7e-13 50.2 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3800) RHS PF03527.14 gi|330507999|ref|YP_004384427.1| - 0.019 14.7 0.1 0.079 12.7 0.0 1.9 2 0 0 2 2 2 0 RHS protein Fic PF02661.18 gi|330508000|ref|YP_004384428.1| - 2.7e-05 25.0 0.2 0.00035 21.4 0.1 2.5 2 1 0 2 2 2 1 Fic/DOC family HicB_lk_antitox PF15919.5 gi|330508001|ref|YP_004384429.1| - 0.013 15.6 0.0 0.015 15.4 0.0 1.1 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system DUF4277 PF14104.6 gi|330508002|ref|YP_004384430.1| - 2.9e-41 140.2 0.0 6e-41 139.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|330508002|ref|YP_004384430.1| - 8.1e-12 45.2 0.2 5.7e-11 42.5 0.2 2.0 1 1 0 1 1 1 1 Transposase DDE domain HhH-GPD PF00730.25 gi|330508003|ref|YP_004384431.1| - 2e-16 60.4 0.0 3.1e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|330508003|ref|YP_004384431.1| - 0.00042 20.0 0.0 0.0015 18.3 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2400 PF09674.10 gi|330508003|ref|YP_004384431.1| - 0.037 14.0 0.0 0.07 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) HHH_5 PF14520.6 gi|330508003|ref|YP_004384431.1| - 0.073 13.7 0.0 0.37 11.4 0.0 2.1 2 1 0 2 2 2 0 Helix-hairpin-helix domain DUF4010 PF13194.6 gi|330508004|ref|YP_004384432.1| - 6e-62 209.1 19.7 6e-62 209.1 19.7 3.0 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|330508004|ref|YP_004384432.1| - 6.3e-14 52.4 14.0 6.3e-14 52.4 14.0 3.5 3 0 0 3 3 3 1 MgtC family SSF PF00474.17 gi|330508005|ref|YP_004384433.1| - 7.7e-52 176.5 33.6 1.3e-51 175.8 33.6 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family Transposase_20 PF02371.16 gi|330508006|ref|YP_004384434.1| - 2.1e-23 82.5 0.2 6.2e-23 80.9 0.1 1.9 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330508006|ref|YP_004384434.1| - 6.1e-23 81.4 0.0 1.6e-22 80.1 0.0 1.7 2 0 0 2 2 2 1 Transposase SET_assoc PF11767.8 gi|330508006|ref|YP_004384434.1| - 0.0093 15.6 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 1 Histone lysine methyltransferase SET associated Ish1 PF10281.9 gi|330508006|ref|YP_004384434.1| - 0.023 15.0 0.0 0.073 13.4 0.0 1.9 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein Hjc PF01870.18 gi|330508006|ref|YP_004384434.1| - 0.028 14.4 0.1 0.078 13.0 0.1 1.8 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) BING4CT PF08149.11 gi|330508006|ref|YP_004384434.1| - 0.089 12.6 0.1 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 BING4CT (NUC141) domain DUF4164 PF13747.6 gi|330508006|ref|YP_004384434.1| - 0.19 12.0 3.9 1 9.7 0.5 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) OrfB_Zn_ribbon PF07282.11 gi|330508007|ref|YP_004384435.1| - 1.7e-25 88.7 0.8 3.9e-25 87.6 0.8 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330508007|ref|YP_004384435.1| - 4.8e-12 46.2 0.1 9.9e-12 45.1 0.1 1.5 1 0 0 1 1 1 1 Probable transposase zf-Mss51 PF13824.6 gi|330508007|ref|YP_004384435.1| - 0.005 16.9 0.2 0.011 15.8 0.2 1.6 1 0 0 1 1 1 1 Zinc-finger of mitochondrial splicing suppressor 51 zf-HC5HC2H_2 PF13832.6 gi|330508007|ref|YP_004384435.1| - 0.014 15.5 1.9 0.12 12.5 0.2 2.4 2 0 0 2 2 2 0 PHD-zinc-finger like domain C1_1 PF00130.22 gi|330508007|ref|YP_004384435.1| - 0.049 13.5 1.1 0.12 12.3 0.5 1.9 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zn-ribbon_14 PF16503.5 gi|330508007|ref|YP_004384435.1| - 0.052 13.1 2.8 4.7 6.8 0.1 2.4 2 0 0 2 2 2 0 Zinc-ribbon TF_Zn_Ribbon PF08271.12 gi|330508007|ref|YP_004384435.1| - 0.058 12.9 0.9 0.12 11.9 0.9 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|330508007|ref|YP_004384435.1| - 0.061 13.3 1.4 0.15 12.0 1.4 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|330508007|ref|YP_004384435.1| - 0.1 12.6 0.1 0.2 11.7 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|330508007|ref|YP_004384435.1| - 0.13 12.1 1.8 0.32 10.9 1.8 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Exonuc_VII_S PF02609.16 gi|330508007|ref|YP_004384435.1| - 0.17 12.0 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 Exonuclease VII small subunit Rubredoxin_2 PF18073.1 gi|330508007|ref|YP_004384435.1| - 2.6 7.8 6.1 0.68 9.7 0.7 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Inositol_P PF00459.25 gi|330508008|ref|YP_004384436.1| - 2.7e-29 102.5 0.0 3.4e-29 102.2 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|330508008|ref|YP_004384436.1| - 0.00082 18.9 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain NAD_kinase PF01513.21 gi|330508009|ref|YP_004384437.1| - 1.9e-58 198.0 0.2 2.2e-58 197.7 0.2 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|330508009|ref|YP_004384437.1| - 0.0018 17.9 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain PK_C PF02887.16 gi|330508009|ref|YP_004384437.1| - 0.054 13.7 0.1 8.9 6.6 0.0 2.6 3 0 0 3 3 3 0 Pyruvate kinase, alpha/beta domain ABC2_membrane_3 PF12698.7 gi|330508010|ref|YP_004384438.1| - 2.8e-40 138.5 16.2 3.2e-40 138.3 16.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|330508010|ref|YP_004384438.1| - 1.5e-32 112.7 25.0 1.8e-32 112.4 15.4 2.7 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|330508010|ref|YP_004384438.1| - 1.2e-10 41.1 13.9 2.2e-10 40.3 13.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|330508010|ref|YP_004384438.1| - 0.00031 20.3 3.1 0.00031 20.3 3.1 1.8 2 0 0 2 2 2 1 CcmB protein ABC2_membrane_4 PF12730.7 gi|330508010|ref|YP_004384438.1| - 0.009 16.0 8.6 0.009 16.0 8.6 2.7 3 0 0 3 3 3 1 ABC-2 family transporter protein InaF-motif PF15018.6 gi|330508010|ref|YP_004384438.1| - 0.06 13.2 2.1 3.4 7.6 0.4 2.8 2 0 0 2 2 2 0 TRP-interacting helix ABC_tran PF00005.27 gi|330508011|ref|YP_004384439.1| - 2.1e-30 106.0 0.0 4.1e-30 105.1 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|330508011|ref|YP_004384439.1| - 2.2e-15 57.2 0.1 2.4e-07 30.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|330508011|ref|YP_004384439.1| - 1.8e-08 34.5 0.0 0.0038 17.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|330508011|ref|YP_004384439.1| - 1e-05 25.1 0.0 0.00048 19.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|330508011|ref|YP_004384439.1| - 9.4e-05 23.0 0.0 0.00019 22.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|330508011|ref|YP_004384439.1| - 0.00015 21.4 0.0 0.00035 20.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|330508011|ref|YP_004384439.1| - 0.00018 21.3 0.0 0.0097 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|330508011|ref|YP_004384439.1| - 0.0027 17.9 0.0 0.014 15.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|330508011|ref|YP_004384439.1| - 0.0059 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|330508011|ref|YP_004384439.1| - 0.008 16.6 0.0 0.022 15.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|330508011|ref|YP_004384439.1| - 0.01 15.8 0.0 0.025 14.6 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|330508011|ref|YP_004384439.1| - 0.031 14.6 0.0 0.092 13.1 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|330508011|ref|YP_004384439.1| - 0.034 14.4 0.0 0.17 12.1 0.0 2.3 2 1 0 2 2 1 0 AAA domain AAA_18 PF13238.6 gi|330508011|ref|YP_004384439.1| - 0.04 14.5 0.0 0.081 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|330508011|ref|YP_004384439.1| - 0.041 13.6 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|330508011|ref|YP_004384439.1| - 0.045 13.7 0.5 0.11 12.3 0.0 1.9 3 0 0 3 3 2 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|330508011|ref|YP_004384439.1| - 0.082 12.9 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|330508011|ref|YP_004384439.1| - 0.088 13.1 0.0 0.29 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|330508011|ref|YP_004384439.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ATPase PF06745.13 gi|330508011|ref|YP_004384439.1| - 0.13 11.6 0.1 7.8 5.8 0.0 2.4 3 0 0 3 3 3 0 KaiC DUF815 PF05673.13 gi|330508011|ref|YP_004384439.1| - 0.17 11.1 0.0 3.1 6.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) NTPase_1 PF03266.15 gi|330508011|ref|YP_004384439.1| - 0.18 11.7 0.0 0.45 10.4 0.0 1.7 2 0 0 2 2 2 0 NTPase cobW PF02492.19 gi|330508011|ref|YP_004384439.1| - 0.2 11.2 0.0 0.6 9.7 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CARDB PF07705.11 gi|330508012|ref|YP_004384440.1| - 0.00034 20.8 0.0 0.97 9.7 0.0 2.4 2 0 0 2 2 2 2 CARDB NPCBM_assoc PF10633.9 gi|330508012|ref|YP_004384440.1| - 0.0018 18.5 0.0 0.34 11.2 0.0 3.0 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|330508012|ref|YP_004384440.1| - 0.0025 18.1 0.1 3.7 7.9 0.0 2.5 2 1 0 2 2 2 2 Domain of unknown function DUF11 BatD PF13584.6 gi|330508012|ref|YP_004384440.1| - 0.044 12.6 0.2 0.93 8.2 0.0 2.2 2 0 0 2 2 2 0 Oxygen tolerance PEMT PF04191.13 gi|330508013|ref|YP_004384441.1| - 4.1e-06 27.1 0.9 4.1e-06 27.1 0.9 1.8 3 0 0 3 3 3 1 Phospholipid methyltransferase DUF1295 PF06966.12 gi|330508013|ref|YP_004384441.1| - 0.027 14.0 0.1 0.034 13.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1295) Peptidase_U32 PF01136.19 gi|330508015|ref|YP_004384443.1| - 4.3e-95 317.3 0.0 2.7e-74 249.2 0.0 3.1 2 1 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|330508015|ref|YP_004384443.1| - 5.4e-21 75.3 0.0 1e-20 74.3 0.0 1.5 1 0 0 1 1 1 1 Collagenase FA_desaturase PF00487.24 gi|330508016|ref|YP_004384444.1| - 1.2 8.9 5.1 0.21 11.4 0.9 1.7 1 1 1 2 2 2 0 Fatty acid desaturase FapA PF03961.13 gi|330508016|ref|YP_004384444.1| - 4.7 5.7 9.3 10 4.6 9.2 1.5 1 1 0 1 1 1 0 Flagellar Assembly Protein A Big_7 PF17957.1 gi|330508016|ref|YP_004384444.1| - 6.4 7.6 8.2 20 6.0 3.7 3.0 2 1 1 3 3 3 0 Bacterial Ig domain SpoU_methylase PF00588.19 gi|330508017|ref|YP_004384445.1| - 4e-29 101.6 0.0 5.4e-29 101.2 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family RtcB PF01139.17 gi|330508018|ref|YP_004384446.1| - 2e-159 531.2 0.0 2.2e-159 531.1 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.16 gi|330508019|ref|YP_004384447.1| - 2.6e-40 137.9 0.1 2.9e-40 137.7 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Radical_SAM PF04055.21 gi|330508020|ref|YP_004384448.1| - 7.9e-08 32.8 0.0 1.9e-07 31.6 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330508020|ref|YP_004384448.1| - 8e-05 22.9 0.0 0.00014 22.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330508020|ref|YP_004384448.1| - 0.00032 20.8 0.0 0.00074 19.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain TetR_C_31 PF17940.1 gi|330508020|ref|YP_004384448.1| - 0.048 13.9 2.4 1.2 9.4 0.1 2.6 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain RHH_8 PF17723.1 gi|330508021|ref|YP_004384449.1| - 2.1e-05 24.7 0.1 2.6e-05 24.4 0.1 1.3 1 1 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family DUF3895 PF13034.6 gi|330508021|ref|YP_004384449.1| - 0.0026 17.7 0.1 0.0041 17.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3895) tRNA_bind_4 PF18490.1 gi|330508022|ref|YP_004384450.1| - 1.1e-55 187.8 0.1 1.5e-55 187.4 0.1 1.2 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|330508022|ref|YP_004384450.1| - 1.2e-07 31.9 0.0 1.9e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DHHA1 PF02272.19 gi|330508024|ref|YP_004384452.1| - 8.5e-16 58.6 0.0 2.3e-15 57.2 0.0 1.8 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|330508024|ref|YP_004384452.1| - 0.038 14.2 0.1 0.075 13.3 0.1 1.5 1 0 0 1 1 1 0 DHH family Ribosomal_S13_N PF08069.12 gi|330508025|ref|YP_004384453.1| - 2.3e-24 85.2 1.1 7.1e-24 83.6 1.1 1.9 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|330508025|ref|YP_004384453.1| - 2.7e-15 56.3 0.5 7.8e-15 54.9 0.4 1.7 2 0 0 2 2 2 1 Ribosomal protein S15 CCDC66 PF15236.6 gi|330508025|ref|YP_004384453.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 66 DUF116 PF01976.17 gi|330508026|ref|YP_004384454.1| - 4.2e-48 162.8 0.0 5e-48 162.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 Fer4 PF00037.27 gi|330508027|ref|YP_004384455.1| - 5.7e-18 63.9 15.9 4.4e-09 35.8 3.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330508027|ref|YP_004384455.1| - 9.8e-13 47.6 16.9 2.8e-06 27.2 4.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330508027|ref|YP_004384455.1| - 2.7e-12 46.6 29.1 1.1e-08 35.0 16.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330508027|ref|YP_004384455.1| - 3e-12 46.5 14.2 3.3e-12 46.4 14.2 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330508027|ref|YP_004384455.1| - 1.2e-11 44.0 15.6 2.5e-06 27.3 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330508027|ref|YP_004384455.1| - 3.1e-11 43.3 13.4 4.1e-11 42.9 13.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330508027|ref|YP_004384455.1| - 7.1e-10 39.3 13.4 1.4e-09 38.4 13.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330508027|ref|YP_004384455.1| - 8.8e-10 39.4 13.8 3.9e-05 24.5 2.0 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|330508027|ref|YP_004384455.1| - 4.7e-08 33.5 14.8 0.00029 21.3 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|330508027|ref|YP_004384455.1| - 5.1e-07 29.7 16.0 0.00094 19.5 5.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330508027|ref|YP_004384455.1| - 3.7e-05 24.2 17.5 0.0096 16.4 4.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330508027|ref|YP_004384455.1| - 4.4e-05 24.1 14.5 0.0059 17.3 14.5 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|330508027|ref|YP_004384455.1| - 5.2e-05 23.9 18.0 0.0077 17.1 4.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330508027|ref|YP_004384455.1| - 0.00027 21.3 18.4 0.04 14.4 5.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|330508027|ref|YP_004384455.1| - 0.00029 20.9 7.5 0.00032 20.8 7.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Furin-like_2 PF15913.5 gi|330508027|ref|YP_004384455.1| - 0.0023 18.1 3.8 0.003 17.7 3.8 1.2 1 0 0 1 1 1 1 Furin-like repeat, cysteine-rich Fer4_22 PF17179.4 gi|330508027|ref|YP_004384455.1| - 0.0026 18.6 8.6 0.082 13.8 1.4 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330508027|ref|YP_004384455.1| - 0.0065 16.6 15.8 0.07 13.3 4.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|330508027|ref|YP_004384455.1| - 0.092 12.9 8.7 1.2 9.3 2.9 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_19 PF06902.11 gi|330508027|ref|YP_004384455.1| - 0.21 11.7 7.5 0.28 11.3 7.5 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Mut7-C PF01927.16 gi|330508027|ref|YP_004384455.1| - 5.6 7.1 9.2 6.7 6.8 9.2 1.0 1 0 0 1 1 1 0 Mut7-C RNAse domain NRDD PF13597.6 gi|330508028|ref|YP_004384456.1| - 2.3e-159 531.8 0.0 2.6e-159 531.6 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Cerato-platanin PF07249.12 gi|330508028|ref|YP_004384456.1| - 0.061 13.4 0.1 0.2 11.8 0.1 1.8 2 0 0 2 2 2 0 Cerato-platanin DUF2953 PF11167.8 gi|330508028|ref|YP_004384456.1| - 0.097 12.8 0.3 0.26 11.4 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2953) TackOD1 PF18551.1 gi|330508028|ref|YP_004384456.1| - 0.16 11.6 1.1 0.32 10.6 0.0 1.9 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 LysE PF01810.18 gi|330508029|ref|YP_004384457.1| - 3.4e-30 104.9 11.1 4.1e-30 104.7 11.1 1.1 1 0 0 1 1 1 1 LysE type translocator SBF PF01758.16 gi|330508030|ref|YP_004384458.1| - 3.6e-07 30.1 9.7 3.6e-07 30.1 9.7 2.3 1 1 1 3 3 3 1 Sodium Bile acid symporter family SpoIIM PF01944.17 gi|330508031|ref|YP_004384459.1| - 6.7e-32 110.7 14.4 8.2e-32 110.4 14.4 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M Ninjurin PF04923.12 gi|330508031|ref|YP_004384459.1| - 0.2 11.6 2.3 1.2 9.1 0.1 2.3 2 1 0 2 2 2 0 Ninjurin tRNA-synt_2b PF00587.25 gi|330508032|ref|YP_004384460.1| - 2e-28 99.5 0.0 3.8e-28 98.7 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|330508032|ref|YP_004384460.1| - 2.4e-19 69.3 0.1 5e-19 68.2 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|330508032|ref|YP_004384460.1| - 1.2e-11 44.7 0.5 1.3e-10 41.4 0.3 2.4 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal ProRS-C_2 PF09181.10 gi|330508032|ref|YP_004384460.1| - 0.09 12.9 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal FMN_red PF03358.15 gi|330508033|ref|YP_004384461.1| - 2.2e-29 102.2 0.0 3e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|330508033|ref|YP_004384461.1| - 7.5e-13 48.6 0.0 9.7e-13 48.3 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold AMMECR1 PF01871.17 gi|330508034|ref|YP_004384462.1| - 6.5e-48 162.5 0.0 7.4e-48 162.3 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Runt PF00853.19 gi|330508034|ref|YP_004384462.1| - 0.24 11.0 0.0 0.38 10.3 0.0 1.3 1 0 0 1 1 1 0 Runt domain tRNA-synt_His PF13393.6 gi|330508036|ref|YP_004384464.1| - 3.3e-62 210.5 2.1 1.5e-46 159.1 0.1 2.1 2 0 0 2 2 2 2 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|330508036|ref|YP_004384464.1| - 3e-17 63.2 0.0 5.1e-17 62.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|330508036|ref|YP_004384464.1| - 1.6e-08 34.6 0.0 3.1e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|330508036|ref|YP_004384464.1| - 9.6e-06 24.9 0.3 0.0022 17.1 0.1 3.0 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|330508036|ref|YP_004384464.1| - 3.5e-05 23.4 0.0 0.00083 18.9 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|330508036|ref|YP_004384464.1| - 0.0032 16.9 0.0 0.011 15.2 0.0 1.7 1 1 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain CCDC117 PF15810.5 gi|330508036|ref|YP_004384464.1| - 0.091 13.1 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 117 DEAD PF00270.29 gi|330508037|ref|YP_004384465.1| - 5.4e-50 169.6 0.0 3.1e-49 167.1 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|330508037|ref|YP_004384465.1| - 4.5e-35 120.4 0.5 1e-34 119.2 0.4 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|330508037|ref|YP_004384465.1| - 1.3e-06 28.5 0.0 2.3e-05 24.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UTP25 PF06862.12 gi|330508037|ref|YP_004384465.1| - 5.2e-05 22.2 0.0 0.0014 17.5 0.0 2.2 2 0 0 2 2 2 1 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 AAA_30 PF13604.6 gi|330508037|ref|YP_004384465.1| - 0.0037 17.0 0.0 0.12 12.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain Shikimate_DH PF01488.20 gi|330508037|ref|YP_004384465.1| - 0.012 15.6 0.2 0.038 14.0 0.1 1.9 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase SMC_N PF02463.19 gi|330508037|ref|YP_004384465.1| - 0.04 13.3 0.1 0.091 12.2 0.0 1.6 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ERCC3_RAD25_C PF16203.5 gi|330508037|ref|YP_004384465.1| - 0.051 12.8 0.1 0.083 12.1 0.1 1.3 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase Helicase_RecD PF05127.14 gi|330508037|ref|YP_004384465.1| - 0.062 13.2 0.2 10 6.0 0.0 2.5 3 0 0 3 3 3 0 Helicase AAA_19 PF13245.6 gi|330508037|ref|YP_004384465.1| - 0.098 13.0 0.4 1.1 9.5 0.5 2.3 1 1 0 1 1 1 0 AAA domain Phage_integrase PF00589.22 gi|330508037|ref|YP_004384465.1| - 0.11 12.2 0.6 0.2 11.4 0.1 1.7 2 0 0 2 2 2 0 Phage integrase family Nuc_rec_co-act PF08815.10 gi|330508037|ref|YP_004384465.1| - 0.12 12.3 0.1 0.32 10.9 0.1 1.7 1 0 0 1 1 1 0 Nuclear receptor coactivator MutS_V PF00488.21 gi|330508039|ref|YP_004384467.1| - 4e-08 33.5 0.0 7.2e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 MutS domain V GA-like PF17573.2 gi|330508039|ref|YP_004384467.1| - 0.00047 20.0 1.5 0.011 15.6 0.2 2.6 2 0 0 2 2 2 1 GA-like domain AAA_21 PF13304.6 gi|330508039|ref|YP_004384467.1| - 0.053 13.3 0.1 0.69 9.7 0.0 2.7 3 0 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system SRP54 PF00448.22 gi|330508039|ref|YP_004384467.1| - 0.16 11.6 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|330508039|ref|YP_004384467.1| - 0.22 11.3 0.1 0.44 10.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Methyltransf_25 PF13649.6 gi|330508040|ref|YP_004384468.1| - 0.17 12.6 0.0 0.34 11.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TrmB PF01978.19 gi|330508041|ref|YP_004384469.1| - 0.00047 20.0 0.2 0.0015 18.4 0.1 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|330508041|ref|YP_004384469.1| - 0.00088 19.4 0.0 0.0015 18.6 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|330508041|ref|YP_004384469.1| - 0.017 15.1 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family SMC_ScpB PF04079.16 gi|330508041|ref|YP_004384469.1| - 0.024 14.3 0.1 0.038 13.6 0.1 1.4 1 1 0 1 1 1 0 Segregation and condensation complex subunit ScpB tRNA-synt_1b PF00579.25 gi|330508042|ref|YP_004384470.1| - 3.7e-41 141.4 0.0 1.4e-23 83.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Oxysterol_BP PF01237.18 gi|330508042|ref|YP_004384470.1| - 0.21 10.4 0.2 0.36 9.6 0.2 1.3 1 0 0 1 1 1 0 Oxysterol-binding protein Peripla_BP_2 PF01497.18 gi|330508043|ref|YP_004384471.1| - 3.7e-26 92.2 0.1 4.8e-26 91.8 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|330508043|ref|YP_004384471.1| - 0.0027 17.9 2.1 0.0078 16.4 2.1 1.9 1 0 0 1 1 1 1 Dockerin type I domain EF-hand_5 PF13202.6 gi|330508043|ref|YP_004384471.1| - 0.15 11.6 1.9 7 6.3 0.2 2.7 2 0 0 2 2 2 0 EF hand Peripla_BP_2 PF01497.18 gi|330508044|ref|YP_004384472.1| - 3.6e-31 108.6 0.1 4.6e-31 108.2 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|330508044|ref|YP_004384472.1| - 0.00081 19.5 2.9 0.0017 18.5 2.9 1.6 1 0 0 1 1 1 1 Dockerin type I domain Peripla_BP_2 PF01497.18 gi|330508045|ref|YP_004384473.1| - 1e-26 94.0 0.0 1.4e-26 93.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|330508045|ref|YP_004384473.1| - 0.026 14.7 1.0 0.052 13.7 1.0 1.5 1 0 0 1 1 1 0 Dockerin type I domain MC1 PF05854.11 gi|330508046|ref|YP_004384474.1| - 1.1e-37 128.1 0.7 1.5e-37 127.8 0.7 1.1 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 ABC_tran PF00005.27 gi|330508047|ref|YP_004384475.1| - 2.6e-32 112.2 0.0 4.5e-32 111.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|330508047|ref|YP_004384475.1| - 6.7e-18 65.3 9.5 8.6e-18 65.0 9.5 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|330508047|ref|YP_004384475.1| - 8.5e-08 31.9 0.2 6.7e-06 25.7 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|330508047|ref|YP_004384475.1| - 4.8e-05 23.8 0.7 0.00028 21.3 0.2 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|330508047|ref|YP_004384475.1| - 6.5e-05 22.9 0.3 0.14 11.9 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|330508047|ref|YP_004384475.1| - 0.0011 18.7 0.0 0.0027 17.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|330508047|ref|YP_004384475.1| - 0.01 16.1 0.0 0.032 14.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|330508047|ref|YP_004384475.1| - 0.04 13.8 0.0 0.089 12.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 gi|330508047|ref|YP_004384475.1| - 0.054 12.8 0.0 0.098 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.6 gi|330508047|ref|YP_004384475.1| - 0.088 12.4 1.1 0.61 9.6 0.4 2.5 2 1 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|330508047|ref|YP_004384475.1| - 0.091 11.5 0.0 0.18 10.6 0.0 1.5 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_7 PF12775.7 gi|330508047|ref|YP_004384475.1| - 0.099 12.2 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|330508047|ref|YP_004384475.1| - 0.15 12.1 0.0 0.54 10.3 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|330508047|ref|YP_004384475.1| - 0.19 12.2 0.0 0.37 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|330508048|ref|YP_004384476.1| - 7.4e-33 114.0 0.0 1.3e-32 113.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|330508048|ref|YP_004384476.1| - 1.2e-16 61.1 6.7 1.8e-16 60.7 6.7 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|330508048|ref|YP_004384476.1| - 7.7e-08 32.0 0.0 4.1e-06 26.4 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|330508048|ref|YP_004384476.1| - 0.0016 18.8 0.7 0.004 17.5 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|330508048|ref|YP_004384476.1| - 0.0021 18.0 0.0 0.0044 16.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|330508048|ref|YP_004384476.1| - 0.011 15.4 0.1 0.03 14.1 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.9 gi|330508048|ref|YP_004384476.1| - 0.012 14.5 0.0 3 6.6 0.0 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain MMR_HSR1 PF01926.23 gi|330508048|ref|YP_004384476.1| - 0.021 14.9 0.0 0.051 13.6 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 gi|330508048|ref|YP_004384476.1| - 0.025 13.4 0.4 0.047 12.5 0.0 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|330508048|ref|YP_004384476.1| - 0.05 13.9 0.0 0.91 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|330508048|ref|YP_004384476.1| - 0.053 13.2 0.5 0.12 12.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|330508048|ref|YP_004384476.1| - 0.06 12.6 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.6 gi|330508048|ref|YP_004384476.1| - 0.084 12.4 0.0 0.22 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF3666 PF12408.8 gi|330508048|ref|YP_004384476.1| - 0.11 11.7 0.0 0.23 10.7 0.0 1.6 1 0 0 1 1 1 0 Ribose-5-phosphate isomerase SbcCD_C PF13558.6 gi|330508048|ref|YP_004384476.1| - 0.12 12.6 0.4 1.5 9.1 0.4 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_21 PF13304.6 gi|330508048|ref|YP_004384476.1| - 0.18 11.6 0.6 13 5.4 0.1 2.3 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system FmdE PF02663.14 gi|330508050|ref|YP_004384478.1| - 1.2e-18 67.5 0.0 2e-18 66.7 0.0 1.4 1 1 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ABC_tran PF00005.27 gi|330508051|ref|YP_004384479.1| - 5.3e-25 88.5 0.0 7.2e-25 88.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330508051|ref|YP_004384479.1| - 3.5e-06 27.1 0.1 0.0018 18.1 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|330508051|ref|YP_004384479.1| - 0.0012 19.0 1.6 0.084 13.1 1.6 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|330508051|ref|YP_004384479.1| - 0.0016 17.9 0.1 0.66 9.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|330508051|ref|YP_004384479.1| - 0.0021 18.6 0.0 0.0032 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|330508051|ref|YP_004384479.1| - 0.013 15.1 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|330508051|ref|YP_004384479.1| - 0.015 15.2 0.5 0.93 9.4 0.5 2.2 1 1 0 1 1 1 0 NTPase AAA_29 PF13555.6 gi|330508051|ref|YP_004384479.1| - 0.025 14.3 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|330508051|ref|YP_004384479.1| - 0.067 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|330508051|ref|YP_004384479.1| - 0.069 13.4 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF4702 PF15774.5 gi|330508051|ref|YP_004384479.1| - 0.1 11.5 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4702) ABC-3 PF00950.17 gi|330508052|ref|YP_004384480.1| - 6.9e-47 160.1 40.1 7.9e-47 159.9 40.1 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|330508052|ref|YP_004384480.1| - 5.7e-05 22.3 35.0 5.7e-05 22.3 35.0 2.0 1 1 1 2 2 2 1 FecCD transport family DUF169 PF02596.15 gi|330508053|ref|YP_004384481.1| - 4.2e-28 98.7 0.3 5e-28 98.4 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 ZnuA PF01297.17 gi|330508054|ref|YP_004384482.1| - 2.4e-14 53.3 1.9 4.3e-14 52.5 1.9 1.4 1 1 0 1 1 1 1 Zinc-uptake complex component A periplasmic Response_reg PF00072.24 gi|330508055|ref|YP_004384483.1| - 5.9e-25 87.6 0.0 6.8e-25 87.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_11 PF08241.12 gi|330508056|ref|YP_004384484.1| - 1.4e-24 86.5 0.0 2.5e-24 85.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330508056|ref|YP_004384484.1| - 4.8e-23 81.7 0.0 9.7e-23 80.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330508056|ref|YP_004384484.1| - 3.4e-22 78.9 0.0 6.4e-22 78.0 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330508056|ref|YP_004384484.1| - 5.3e-18 65.4 0.0 7.4e-18 64.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330508056|ref|YP_004384484.1| - 1.2e-14 54.2 0.0 1.9e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|330508056|ref|YP_004384484.1| - 1.1e-11 45.3 0.0 2e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330508056|ref|YP_004384484.1| - 2.6e-07 30.4 0.0 4.9e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|330508056|ref|YP_004384484.1| - 3.5e-06 26.9 0.0 8.6e-06 25.6 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|330508056|ref|YP_004384484.1| - 8.6e-06 25.8 0.0 1.6e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|330508056|ref|YP_004384484.1| - 2e-05 24.1 0.0 4.6e-05 23.0 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|330508056|ref|YP_004384484.1| - 2.5e-05 24.0 0.0 4.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|330508056|ref|YP_004384484.1| - 0.0002 21.3 0.0 0.00037 20.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|330508056|ref|YP_004384484.1| - 0.00026 20.7 0.0 0.00035 20.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) GidB PF02527.15 gi|330508056|ref|YP_004384484.1| - 0.00076 18.8 0.0 0.0017 17.7 0.0 1.6 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G UPF0020 PF01170.18 gi|330508056|ref|YP_004384484.1| - 0.0026 17.5 0.0 0.0046 16.7 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 CMAS PF02353.20 gi|330508056|ref|YP_004384484.1| - 0.0034 16.7 0.0 0.0045 16.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|330508056|ref|YP_004384484.1| - 0.0059 16.0 0.0 0.0085 15.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB FtsJ PF01728.19 gi|330508056|ref|YP_004384484.1| - 0.01 15.9 0.0 0.015 15.4 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|330508056|ref|YP_004384484.1| - 0.011 14.8 0.0 0.05 12.7 0.0 1.8 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase TPMT PF05724.11 gi|330508056|ref|YP_004384484.1| - 0.016 14.9 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_9 PF08003.11 gi|330508056|ref|YP_004384484.1| - 0.027 13.4 0.1 0.04 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) UDPG_MGDP_dh_N PF03721.14 gi|330508056|ref|YP_004384484.1| - 0.088 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Methyltr_RsmB-F PF01189.17 gi|330508056|ref|YP_004384484.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Peripla_BP_2 PF01497.18 gi|330508057|ref|YP_004384485.1| - 8.9e-17 61.4 0.0 1.6e-16 60.6 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|330508057|ref|YP_004384485.1| - 0.16 12.2 1.6 0.4 10.9 1.6 1.7 1 0 0 1 1 1 0 Dockerin type I domain Methyltransf_11 PF08241.12 gi|330508058|ref|YP_004384486.1| - 9.5e-26 90.3 0.0 1.6e-25 89.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330508058|ref|YP_004384486.1| - 6.7e-22 78.0 0.0 1.1e-21 77.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330508058|ref|YP_004384486.1| - 1.1e-17 64.3 0.0 1.4e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330508058|ref|YP_004384486.1| - 8.2e-16 58.3 0.0 1.1e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330508058|ref|YP_004384486.1| - 7.9e-15 54.8 0.0 1e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|330508058|ref|YP_004384486.1| - 1.3e-11 45.1 0.0 1.9e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|330508058|ref|YP_004384486.1| - 3.2e-05 23.6 0.0 4.8e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|330508058|ref|YP_004384486.1| - 0.00012 21.7 0.0 0.00046 19.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|330508058|ref|YP_004384486.1| - 0.00014 21.7 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|330508058|ref|YP_004384486.1| - 0.00088 18.7 0.0 0.0013 18.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 gi|330508058|ref|YP_004384486.1| - 0.0072 15.8 0.0 0.0094 15.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|330508058|ref|YP_004384486.1| - 0.013 15.5 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|330508058|ref|YP_004384486.1| - 0.021 13.9 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.11 gi|330508058|ref|YP_004384486.1| - 0.043 12.7 0.0 0.067 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.15 gi|330508058|ref|YP_004384486.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.6 2 0 0 2 2 2 0 Hypothetical methyltransferase DREV PF05219.12 gi|330508058|ref|YP_004384486.1| - 0.11 11.6 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase MFS_1 PF07690.16 gi|330508059|ref|YP_004384487.1| - 2.6e-32 112.1 37.0 8.1e-32 110.5 29.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|330508059|ref|YP_004384487.1| - 7.4e-10 38.0 19.3 7.4e-10 38.0 19.3 2.8 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|330508059|ref|YP_004384487.1| - 1.4e-08 34.0 30.7 1.7e-07 30.4 11.8 2.1 1 1 1 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 gi|330508059|ref|YP_004384487.1| - 0.00029 19.7 13.8 0.00029 19.7 13.8 2.2 2 0 0 2 2 2 2 LacY proton/sugar symporter MFS_3 PF05977.13 gi|330508059|ref|YP_004384487.1| - 0.41 9.0 12.8 0.73 8.2 12.8 1.3 1 0 0 1 1 1 0 Transmembrane secretion effector DUF4536 PF15055.6 gi|330508059|ref|YP_004384487.1| - 0.44 10.8 2.5 9.6 6.5 0.1 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4536) SBP_bac_5 PF00496.22 gi|330508060|ref|YP_004384488.1| - 5.5e-94 315.2 0.0 7.5e-94 314.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|330508061|ref|YP_004384489.1| - 6.3e-45 153.2 10.0 6.3e-45 153.2 10.0 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|330508062|ref|YP_004384490.1| - 1.1e-31 110.0 3.4 1.1e-31 110.0 3.4 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|330508062|ref|YP_004384490.1| - 3.9e-06 26.7 0.2 3.9e-06 26.7 0.2 3.2 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C Chlam_PMP PF02415.17 gi|330508063|ref|YP_004384491.1| - 3.4e-05 24.0 45.3 0.37 11.4 0.0 10.0 11 0 0 11 11 11 6 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat DUF3797 PF12677.7 gi|330508063|ref|YP_004384491.1| - 0.021 14.7 0.2 5.6 6.9 0.1 3.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) PLDc PF00614.22 gi|330508063|ref|YP_004384491.1| - 0.1 12.9 0.2 1.3 9.3 0.0 2.9 3 0 0 3 3 3 0 Phospholipase D Active site motif Peripla_BP_2 PF01497.18 gi|330508064|ref|YP_004384492.1| - 1.2e-14 54.5 0.3 1.7e-14 54.0 0.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF772 PF05598.11 gi|330508065|ref|YP_004384493.1| - 2.6e-21 75.4 0.0 4.8e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|330508065|ref|YP_004384493.1| - 1.5e-15 57.4 4.6 5e-15 55.7 4.6 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|330508065|ref|YP_004384493.1| - 3e-05 23.8 0.3 0.00012 21.8 0.3 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.6 gi|330508065|ref|YP_004384493.1| - 3.1e-05 24.2 0.4 5.3e-05 23.4 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain EnY2 PF10163.9 gi|330508065|ref|YP_004384493.1| - 0.052 13.9 0.1 0.12 12.8 0.1 1.6 1 0 0 1 1 1 0 Transcription factor e(y)2 Dockerin_1 PF00404.18 gi|330508066|ref|YP_004384494.1| - 0.14 12.4 0.2 0.14 12.4 0.2 2.2 2 1 1 3 3 3 0 Dockerin type I domain CooT PF10133.9 gi|330508067|ref|YP_004384495.1| - 4.1e-16 59.0 0.5 4.5e-16 58.9 0.5 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT DUF3197 PF11432.8 gi|330508067|ref|YP_004384495.1| - 0.082 12.8 0.0 0.084 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3197) CbiA PF01656.23 gi|330508068|ref|YP_004384496.1| - 5.8e-21 74.9 0.0 9.8e-21 74.1 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|330508068|ref|YP_004384496.1| - 5.4e-14 52.5 0.0 1.6e-13 51.0 0.0 1.8 1 1 1 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|330508068|ref|YP_004384496.1| - 4e-12 46.0 0.0 2.2e-11 43.5 0.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|330508068|ref|YP_004384496.1| - 1.1e-10 41.4 0.0 3.9e-07 29.8 0.0 2.1 1 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|330508068|ref|YP_004384496.1| - 9.1e-10 38.4 0.1 1.2e-08 34.7 0.1 2.2 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|330508068|ref|YP_004384496.1| - 1.1e-08 34.9 0.1 4e-08 33.0 0.0 1.9 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_16 PF13191.6 gi|330508068|ref|YP_004384496.1| - 9.1e-06 26.2 0.0 1.3e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain MeaB PF03308.16 gi|330508068|ref|YP_004384496.1| - 1.6e-05 24.0 0.2 3.8e-05 22.8 0.0 1.6 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 gi|330508068|ref|YP_004384496.1| - 4.8e-05 23.2 0.0 0.0011 18.7 0.1 2.2 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|330508068|ref|YP_004384496.1| - 0.00025 20.8 0.0 0.00045 19.9 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|330508068|ref|YP_004384496.1| - 0.00043 20.1 0.0 0.00065 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|330508068|ref|YP_004384496.1| - 0.0012 18.8 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 NTPase MobB PF03205.14 gi|330508068|ref|YP_004384496.1| - 0.0024 17.8 0.0 0.0059 16.5 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 gi|330508068|ref|YP_004384496.1| - 0.0038 17.0 0.0 0.006 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|330508068|ref|YP_004384496.1| - 0.0052 16.6 0.0 0.013 15.3 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|330508068|ref|YP_004384496.1| - 0.0059 17.1 0.1 0.016 15.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain CTP_synth_N PF06418.14 gi|330508068|ref|YP_004384496.1| - 0.01 15.1 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 0 CTP synthase N-terminus VirC1 PF07015.11 gi|330508068|ref|YP_004384496.1| - 0.016 14.5 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein APS_kinase PF01583.20 gi|330508068|ref|YP_004384496.1| - 0.018 15.0 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase LpxK PF02606.14 gi|330508068|ref|YP_004384496.1| - 0.021 13.9 0.3 0.19 10.8 0.1 2.0 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_7 PF12775.7 gi|330508068|ref|YP_004384496.1| - 0.025 14.1 0.0 0.04 13.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|330508068|ref|YP_004384496.1| - 0.027 14.1 0.0 0.084 12.4 0.0 1.8 3 0 0 3 3 2 0 AAA domain NACHT PF05729.12 gi|330508068|ref|YP_004384496.1| - 0.03 14.2 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain MipZ PF09140.11 gi|330508068|ref|YP_004384496.1| - 0.031 13.5 0.0 0.072 12.4 0.0 1.6 1 0 0 1 1 1 0 ATPase MipZ AAA_28 PF13521.6 gi|330508068|ref|YP_004384496.1| - 0.04 14.2 0.1 0.099 12.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.22 gi|330508068|ref|YP_004384496.1| - 0.043 13.0 0.0 0.062 12.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|330508068|ref|YP_004384496.1| - 0.051 13.5 0.1 0.66 9.9 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase cobW PF02492.19 gi|330508068|ref|YP_004384496.1| - 0.058 13.0 0.8 0.21 11.2 0.0 2.1 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.10 gi|330508068|ref|YP_004384496.1| - 0.077 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TrwB_AAD_bind PF10412.9 gi|330508068|ref|YP_004384496.1| - 0.098 11.5 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|330508068|ref|YP_004384496.1| - 0.12 12.7 0.0 0.23 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|330508068|ref|YP_004384496.1| - 0.16 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|330508068|ref|YP_004384496.1| - 0.18 12.0 0.1 1.3 9.2 0.1 2.1 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|330508068|ref|YP_004384496.1| - 0.2 11.4 0.3 0.56 9.9 0.1 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF4198 PF10670.9 gi|330508069|ref|YP_004384497.1| - 3.4e-26 93.0 0.0 3.8e-26 92.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) bMG3 PF11974.8 gi|330508069|ref|YP_004384497.1| - 0.00046 20.2 0.0 0.00085 19.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain Gate PF07670.14 gi|330508070|ref|YP_004384498.1| - 0.0012 19.1 21.3 0.061 13.6 3.5 3.4 2 2 1 3 3 3 2 Nucleoside recognition Peripla_BP_2 PF01497.18 gi|330508071|ref|YP_004384499.1| - 7e-24 84.7 0.0 9.4e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|330508071|ref|YP_004384499.1| - 0.51 10.6 2.7 0.96 9.7 2.7 1.5 1 0 0 1 1 1 0 Dockerin type I domain Peripla_BP_2 PF01497.18 gi|330508072|ref|YP_004384500.1| - 1.9e-25 89.9 0.0 4.5e-22 78.8 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein T2SS-T3SS_pil_N PF13629.6 gi|330508072|ref|YP_004384500.1| - 0.04 13.7 0.2 0.094 12.5 0.2 1.6 1 0 0 1 1 1 0 Pilus formation protein N terminal region DDE_Tnp_1 PF01609.21 gi|330508073|ref|YP_004384501.1| - 4.9e-25 88.4 0.3 7.8e-25 87.8 0.0 1.5 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|330508073|ref|YP_004384501.1| - 0.0064 15.8 0.2 0.011 15.0 0.2 1.3 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 PRD1_DD PF11087.8 gi|330508073|ref|YP_004384501.1| - 0.034 13.8 0.3 0.43 10.3 0.0 2.2 2 0 0 2 2 2 0 PRD1 phage membrane DNA delivery DDE_3 PF13358.6 gi|330508074|ref|YP_004384502.1| - 1.5e-31 109.1 0.0 1.8e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF815 PF05673.13 gi|330508074|ref|YP_004384502.1| - 0.021 14.0 0.1 0.028 13.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) P-mevalo_kinase PF04275.14 gi|330508074|ref|YP_004384502.1| - 0.09 12.7 0.1 6.4 6.8 0.0 2.2 2 0 0 2 2 2 0 Phosphomevalonate kinase HTH_32 PF13565.6 gi|330508075|ref|YP_004384503.1| - 2.6e-15 56.8 0.0 1.6e-14 54.2 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|330508075|ref|YP_004384503.1| - 1.5e-13 50.5 0.2 7.5e-13 48.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|330508075|ref|YP_004384503.1| - 6.7e-07 28.9 0.4 0.0006 19.5 0.0 3.1 3 1 0 3 3 3 2 Homeodomain-like domain HTH_28 PF13518.6 gi|330508075|ref|YP_004384503.1| - 0.00038 20.5 0.1 0.0073 16.4 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain RP-C PF03428.13 gi|330508075|ref|YP_004384503.1| - 0.014 15.1 0.1 0.025 14.3 0.1 1.5 2 0 0 2 2 2 0 Replication protein C N-terminal domain PTRF_SDPR PF15237.6 gi|330508075|ref|YP_004384503.1| - 0.018 14.7 0.1 0.045 13.4 0.1 1.6 1 1 0 1 1 1 0 PTRF/SDPR family SIMPL PF04402.14 gi|330508075|ref|YP_004384503.1| - 0.042 14.3 0.0 0.046 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF541) Sigma70_r4 PF04545.16 gi|330508075|ref|YP_004384503.1| - 0.2 11.2 2.5 2.4 7.7 0.2 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 DDE_Tnp_IS66 PF03050.14 gi|330508076|ref|YP_004384504.1| - 3.9e-06 26.6 0.0 5.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Transposase IS66 family DUF2593 PF10767.9 gi|330508076|ref|YP_004384504.1| - 0.13 12.3 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2593) zf-IS66 PF13005.7 gi|330508077|ref|YP_004384505.1| - 0.001 19.4 1.1 0.0014 19.0 1.1 1.4 1 1 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DUF2178 PF09946.9 gi|330508078|ref|YP_004384506.1| - 1.4e-34 118.4 7.9 1.6e-34 118.2 7.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) Intg_mem_TP0381 PF09529.10 gi|330508078|ref|YP_004384506.1| - 0.0028 17.2 0.7 0.0034 16.9 0.7 1.2 1 0 0 1 1 1 1 Integral membrane protein (intg_mem_TP0381) DUF1576 PF07613.11 gi|330508078|ref|YP_004384506.1| - 0.27 10.7 5.5 2.3 7.7 4.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1576) Coat_X PF07552.11 gi|330508078|ref|YP_004384506.1| - 0.35 10.7 0.1 0.35 10.7 0.1 1.9 2 0 0 2 2 2 0 Spore Coat Protein X and V domain HTH_3 PF01381.22 gi|330508079|ref|YP_004384507.1| - 2.7e-17 62.6 0.1 3e-17 62.4 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|330508079|ref|YP_004384507.1| - 2e-09 37.3 0.1 2.4e-09 37.1 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|330508079|ref|YP_004384507.1| - 1.3e-07 31.8 0.0 1.6e-07 31.6 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|330508079|ref|YP_004384507.1| - 2.1e-07 31.3 0.0 2.5e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.16 gi|330508079|ref|YP_004384507.1| - 0.00029 20.3 0.1 0.0005 19.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|330508079|ref|YP_004384507.1| - 0.0012 18.8 0.1 0.0021 18.0 0.1 1.5 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.12 gi|330508079|ref|YP_004384507.1| - 0.0013 18.4 0.1 0.036 13.8 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|330508079|ref|YP_004384507.1| - 0.0018 18.2 0.0 0.0037 17.2 0.0 1.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|330508079|ref|YP_004384507.1| - 0.0046 16.5 0.0 0.007 15.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_25 PF13413.6 gi|330508079|ref|YP_004384507.1| - 0.0079 16.0 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|330508079|ref|YP_004384507.1| - 0.017 15.0 0.0 0.024 14.5 0.0 1.4 1 1 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF4941 PF16299.5 gi|330508079|ref|YP_004384507.1| - 0.045 13.1 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4941) Phage_CI_repr PF07022.13 gi|330508079|ref|YP_004384507.1| - 0.058 13.5 0.0 0.07 13.2 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_23 PF13384.6 gi|330508079|ref|YP_004384507.1| - 0.066 13.0 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|330508079|ref|YP_004384507.1| - 0.066 13.0 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|330508079|ref|YP_004384507.1| - 0.082 12.6 0.0 0.16 11.7 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|330508079|ref|YP_004384507.1| - 0.097 12.5 0.1 0.37 10.6 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain MarR PF01047.22 gi|330508079|ref|YP_004384507.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family Colicin_E5 PF12106.8 gi|330508080|ref|YP_004384508.1| - 0.00069 19.9 1.1 26 5.2 0.1 5.3 6 0 0 6 6 6 1 Colicin E5 ribonuclease domain DUF5597 PF18120.1 gi|330508080|ref|YP_004384508.1| - 0.027 14.6 1.1 6.2 6.9 0.0 3.9 2 2 0 3 3 3 0 Domain of unknown function (DUF5597) DUF1654 PF07867.11 gi|330508080|ref|YP_004384508.1| - 0.14 11.9 5.5 1.4 8.7 0.3 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF1654) CbiN PF02553.15 gi|330508080|ref|YP_004384508.1| - 0.28 11.2 1.7 13 5.9 0.1 3.6 4 0 0 4 4 4 0 Cobalt transport protein component CbiN Transposase_20 PF02371.16 gi|330508081|ref|YP_004384509.1| - 1.4e-24 86.2 0.0 2.4e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330508081|ref|YP_004384509.1| - 5.2e-23 81.6 0.0 1.1e-22 80.6 0.0 1.5 1 0 0 1 1 1 1 Transposase DUF4164 PF13747.6 gi|330508081|ref|YP_004384509.1| - 1.8 8.9 4.4 5.8 7.3 0.2 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) Beta_helix PF13229.6 gi|330508082|ref|YP_004384510.1| - 1.1e-15 57.8 59.1 2.5e-09 37.2 26.0 4.1 1 1 1 2 2 2 2 Right handed beta helix region NosD PF05048.13 gi|330508082|ref|YP_004384510.1| - 4.7e-14 52.2 43.3 4.2e-13 49.1 25.3 3.0 2 1 1 3 3 3 2 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.7 gi|330508082|ref|YP_004384510.1| - 5.8e-06 26.3 27.6 0.088 12.6 3.3 4.3 1 1 4 5 5 5 5 Pectate lyase superfamily protein Pentapeptide_4 PF13599.6 gi|330508082|ref|YP_004384510.1| - 0.0048 17.0 2.7 0.23 11.6 0.1 3.4 4 1 0 4 4 4 1 Pentapeptide repeats (9 copies) PatG_C PF18065.1 gi|330508083|ref|YP_004384511.1| - 9.2e-38 128.8 0.3 1.7e-37 127.9 0.3 1.4 1 0 0 1 1 1 1 PatG C-terminal PatG_D PF18047.1 gi|330508083|ref|YP_004384511.1| - 2.3e-32 111.7 0.1 1.2e-30 106.2 0.1 2.2 1 1 0 1 1 1 1 PatG Domain ZapA PF05164.13 gi|330508083|ref|YP_004384511.1| - 0.011 16.2 0.1 0.022 15.2 0.1 1.5 1 0 0 1 1 1 0 Cell division protein ZapA DDE_5 PF13546.6 gi|330508084|ref|YP_004384512.1| - 3.6e-12 46.2 0.0 5.6e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_2 PF04693.12 gi|330508084|ref|YP_004384512.1| - 6.3e-05 22.4 0.9 0.0051 16.1 0.9 2.1 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 Mlp PF03304.13 gi|330508084|ref|YP_004384512.1| - 1.2 9.4 7.6 2.3 8.5 7.4 1.6 1 1 0 1 1 1 0 Mlp lipoprotein family rve PF00665.26 gi|330508085|ref|YP_004384513.1| - 1.3e-26 93.1 0.0 2.2e-26 92.4 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|330508085|ref|YP_004384513.1| - 1.6e-05 24.6 0.0 8.1e-05 22.3 0.0 2.3 2 1 1 3 3 3 1 Integrase core domain HTH_7 PF02796.15 gi|330508085|ref|YP_004384513.1| - 0.0012 18.9 0.0 0.0037 17.3 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|330508085|ref|YP_004384513.1| - 0.0039 17.2 0.1 0.088 12.8 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn helix TnsD PF15978.5 gi|330508085|ref|YP_004384513.1| - 0.016 14.2 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_11 PF08279.12 gi|330508085|ref|YP_004384513.1| - 0.05 13.6 0.1 0.15 12.0 0.1 1.8 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|330508085|ref|YP_004384513.1| - 0.1 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|330508085|ref|YP_004384513.1| - 0.12 12.1 0.2 0.39 10.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|330508085|ref|YP_004384513.1| - 0.13 11.8 0.1 0.33 10.5 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Mga PF08280.11 gi|330508085|ref|YP_004384513.1| - 0.15 12.1 0.0 0.54 10.3 0.0 2.0 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_3 PF01381.22 gi|330508085|ref|YP_004384513.1| - 0.16 12.1 0.0 0.44 10.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|330508085|ref|YP_004384513.1| - 0.16 11.7 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.6 gi|330508085|ref|YP_004384513.1| - 0.17 12.3 0.0 0.53 10.8 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain GcrA PF07750.11 gi|330508085|ref|YP_004384513.1| - 0.2 12.1 0.0 0.36 11.3 0.0 1.4 1 0 0 1 1 1 0 GcrA cell cycle regulator IstB_IS21 PF01695.17 gi|330508086|ref|YP_004384514.1| - 1.5e-65 220.3 0.0 2.2e-65 219.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|330508086|ref|YP_004384514.1| - 2.5e-08 34.0 0.0 3.7e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 gi|330508086|ref|YP_004384514.1| - 8.9e-07 29.4 0.0 1.6e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|330508086|ref|YP_004384514.1| - 0.00021 20.8 0.0 0.00035 20.1 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein RuvB_N PF05496.12 gi|330508086|ref|YP_004384514.1| - 0.0005 19.8 0.0 0.00084 19.1 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|330508086|ref|YP_004384514.1| - 0.00061 20.1 0.2 0.44 10.8 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|330508086|ref|YP_004384514.1| - 0.00063 20.2 0.0 0.0021 18.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|330508086|ref|YP_004384514.1| - 0.00067 19.4 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|330508086|ref|YP_004384514.1| - 0.0018 18.5 0.0 0.0033 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|330508086|ref|YP_004384514.1| - 0.0076 16.3 0.0 0.02 14.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|330508086|ref|YP_004384514.1| - 0.012 15.2 0.2 0.17 11.4 0.0 2.1 1 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|330508086|ref|YP_004384514.1| - 0.016 15.0 0.1 0.056 13.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|330508086|ref|YP_004384514.1| - 0.022 14.8 0.2 0.089 12.8 0.3 2.0 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) KTI12 PF08433.10 gi|330508086|ref|YP_004384514.1| - 0.022 14.2 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|330508086|ref|YP_004384514.1| - 0.023 15.3 0.2 0.064 13.8 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|330508086|ref|YP_004384514.1| - 0.027 14.8 0.3 0.42 10.9 0.1 2.4 2 1 1 3 3 2 0 AAA domain NTPase_1 PF03266.15 gi|330508086|ref|YP_004384514.1| - 0.035 14.0 0.5 6.2 6.7 0.0 2.4 1 1 0 2 2 2 0 NTPase AAA_7 PF12775.7 gi|330508086|ref|YP_004384514.1| - 0.054 13.0 0.0 0.1 12.1 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region CbiA PF01656.23 gi|330508086|ref|YP_004384514.1| - 0.055 13.5 0.1 0.27 11.3 0.1 1.9 1 1 1 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|330508086|ref|YP_004384514.1| - 0.13 11.2 0.0 0.26 10.2 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ResIII PF04851.15 gi|330508086|ref|YP_004384514.1| - 0.13 12.2 0.0 3.9 7.5 0.0 2.2 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|330508086|ref|YP_004384514.1| - 0.14 11.5 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|330508086|ref|YP_004384514.1| - 0.16 11.9 0.4 1 9.3 0.1 2.3 2 1 0 2 2 2 0 NACHT domain AAA_11 PF13086.6 gi|330508086|ref|YP_004384514.1| - 0.17 11.6 0.2 1.8 8.3 0.0 2.3 1 1 1 2 2 2 0 AAA domain DDE_Tnp_1 PF01609.21 gi|330508087|ref|YP_004384515.1| - 9.9e-06 25.3 0.8 1.2e-05 25.0 0.8 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|330508087|ref|YP_004384515.1| - 1.3e-05 24.6 1.0 1.7e-05 24.2 1.0 1.1 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 SeqA PF03925.13 gi|330508087|ref|YP_004384515.1| - 0.014 15.4 0.3 0.031 14.2 0.1 1.6 2 0 0 2 2 2 0 SeqA protein C-terminal domain Colicin_M PF14859.6 gi|330508087|ref|YP_004384515.1| - 0.073 12.2 0.1 0.1 11.7 0.1 1.2 1 0 0 1 1 1 0 Colicin M Colicin_E5 PF12106.8 gi|330508088|ref|YP_004384516.1| - 6e-07 29.7 0.2 21 5.5 0.0 6.4 7 0 0 7 7 7 2 Colicin E5 ribonuclease domain Caskin1-CID PF16600.5 gi|330508088|ref|YP_004384516.1| - 0.0072 16.9 0.1 1.4 9.5 0.0 2.9 2 0 0 2 2 2 1 Caskin1 CASK-interaction domain DUF2064 PF09837.9 gi|330508088|ref|YP_004384516.1| - 0.011 15.6 13.8 8.1 6.3 0.0 6.2 6 0 0 6 6 6 0 Uncharacterized protein conserved in bacteria (DUF2064) PatG_C PF18065.1 gi|330508089|ref|YP_004384517.1| - 1.5e-38 131.3 0.4 2.1e-38 130.8 0.4 1.2 1 0 0 1 1 1 1 PatG C-terminal PatG_D PF18047.1 gi|330508089|ref|YP_004384517.1| - 1.2e-29 103.0 0.0 5.1e-29 100.9 0.0 1.8 1 1 0 1 1 1 1 PatG Domain ZapA PF05164.13 gi|330508089|ref|YP_004384517.1| - 0.12 12.8 0.2 0.25 11.8 0.2 1.4 1 0 0 1 1 1 0 Cell division protein ZapA DUF2064 PF09837.9 gi|330508090|ref|YP_004384518.1| - 0.11 12.4 5.0 24 4.8 0.0 4.0 5 0 0 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2064) Kelch_6 PF13964.6 gi|330508090|ref|YP_004384518.1| - 0.21 11.9 1.2 13 6.3 0.1 3.5 3 0 0 3 3 3 0 Kelch motif PQQ_3 PF13570.6 gi|330508090|ref|YP_004384518.1| - 0.7 10.5 15.4 8 7.1 0.1 5.6 7 0 0 7 7 7 0 PQQ-like domain Pyrid_ox_like PF16242.5 gi|330508090|ref|YP_004384518.1| - 0.77 9.3 3.2 27 4.3 0.0 3.5 3 1 1 4 4 4 0 Pyridoxamine 5'-phosphate oxidase like PatG_C PF18065.1 gi|330508091|ref|YP_004384519.1| - 5.4e-38 129.5 0.5 1.1e-37 128.6 0.3 1.6 2 0 0 2 2 2 1 PatG C-terminal PatG_D PF18047.1 gi|330508091|ref|YP_004384519.1| - 6.2e-32 110.3 0.1 3.1e-30 104.9 0.1 2.2 1 1 0 1 1 1 1 PatG Domain ZapA PF05164.13 gi|330508091|ref|YP_004384519.1| - 0.02 15.3 0.1 0.042 14.3 0.1 1.5 1 0 0 1 1 1 0 Cell division protein ZapA DUF4166 PF13761.6 gi|330508092|ref|YP_004384520.1| - 0.0014 18.4 1.6 12 5.6 0.0 4.5 4 1 1 5 5 5 1 Domain of unknown function (DUF4166) Colicin_E5 PF12106.8 gi|330508092|ref|YP_004384520.1| - 0.0018 18.5 5.5 0.75 10.1 0.5 4.8 3 1 2 5 5 5 1 Colicin E5 ribonuclease domain PQQ_3 PF13570.6 gi|330508092|ref|YP_004384520.1| - 0.015 15.7 9.3 1.1 9.9 0.2 5.1 5 0 0 5 5 5 0 PQQ-like domain DUF4263 PF14082.6 gi|330508092|ref|YP_004384520.1| - 0.078 13.2 0.1 7.7 6.8 0.0 3.5 1 1 3 5 5 5 0 Domain of unknown function (DUF4263) mRNA_decap_C PF16741.5 gi|330508092|ref|YP_004384520.1| - 0.1 11.9 0.6 81 2.6 0.0 4.1 4 0 0 4 4 4 0 mRNA-decapping enzyme C-terminus DUF2064 PF09837.9 gi|330508092|ref|YP_004384520.1| - 2.1 8.2 9.6 23 4.9 0.0 4.7 6 0 0 6 6 6 0 Uncharacterized protein conserved in bacteria (DUF2064) Inhibitor_I42 PF09394.10 gi|330508092|ref|YP_004384520.1| - 3.4 8.1 10.4 2.6 8.5 0.0 4.6 2 2 3 5 5 5 0 Chagasin family peptidase inhibitor I42 PatG_C PF18065.1 gi|330508093|ref|YP_004384521.1| - 3.6e-38 130.1 0.3 6e-38 129.4 0.3 1.4 1 0 0 1 1 1 1 PatG C-terminal PatG_D PF18047.1 gi|330508093|ref|YP_004384521.1| - 2.8e-35 121.1 0.1 2.7e-33 114.7 0.1 2.2 1 1 0 1 1 1 1 PatG Domain ZapA PF05164.13 gi|330508093|ref|YP_004384521.1| - 0.14 12.6 0.1 0.3 11.5 0.1 1.5 1 0 0 1 1 1 0 Cell division protein ZapA Colicin_E5 PF12106.8 gi|330508094|ref|YP_004384522.1| - 1e-05 25.7 0.6 50 4.3 0.0 6.3 7 0 0 7 7 7 2 Colicin E5 ribonuclease domain DUF2064 PF09837.9 gi|330508094|ref|YP_004384522.1| - 9.5e-05 22.2 9.4 8.3 6.3 0.1 5.8 6 0 0 6 6 6 4 Uncharacterized protein conserved in bacteria (DUF2064) DUF4166 PF13761.6 gi|330508094|ref|YP_004384522.1| - 0.015 15.1 0.0 4 7.2 0.0 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4166) NosD PF05048.13 gi|330508095|ref|YP_004384523.1| - 1.7e-17 63.5 52.2 1.9e-16 60.0 27.1 3.1 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|330508095|ref|YP_004384523.1| - 2.1e-16 60.2 60.7 5.4e-07 29.6 32.1 4.8 1 1 1 3 3 3 3 Right handed beta helix region TrmB PF01978.19 gi|330508096|ref|YP_004384524.1| - 9e-09 35.1 0.1 1.4e-08 34.5 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|330508096|ref|YP_004384524.1| - 4e-08 32.9 0.1 7.4e-08 32.1 0.0 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|330508096|ref|YP_004384524.1| - 4e-08 33.0 0.1 6.6e-08 32.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|330508096|ref|YP_004384524.1| - 6.8e-07 29.3 0.0 1.1e-06 28.5 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|330508096|ref|YP_004384524.1| - 4.1e-06 26.6 0.0 6.4e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|330508096|ref|YP_004384524.1| - 9e-06 25.6 0.1 1.2e-05 25.2 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|330508096|ref|YP_004384524.1| - 0.0002 20.9 0.1 0.00036 20.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RP-C PF03428.13 gi|330508096|ref|YP_004384524.1| - 0.00049 19.8 0.0 0.00062 19.5 0.0 1.3 1 1 0 1 1 1 1 Replication protein C N-terminal domain DUF1495 PF07381.11 gi|330508096|ref|YP_004384524.1| - 0.0005 19.8 0.1 0.00077 19.2 0.1 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|330508096|ref|YP_004384524.1| - 0.001 19.0 0.1 0.0013 18.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2513 PF10711.9 gi|330508096|ref|YP_004384524.1| - 0.0015 18.8 0.0 0.0019 18.5 0.0 1.3 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_9 PF08221.11 gi|330508096|ref|YP_004384524.1| - 0.0017 18.4 0.1 0.0046 17.0 0.1 1.8 1 1 1 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_27 PF13463.6 gi|330508096|ref|YP_004384524.1| - 0.0018 18.8 0.1 0.0026 18.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_35 PF13693.6 gi|330508096|ref|YP_004384524.1| - 0.0028 17.6 0.2 0.0072 16.3 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HxlR PF01638.17 gi|330508096|ref|YP_004384524.1| - 0.0031 17.3 0.1 0.0045 16.8 0.1 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Rio2_N PF09202.11 gi|330508096|ref|YP_004384524.1| - 0.0098 16.1 0.1 0.013 15.7 0.1 1.3 1 0 0 1 1 1 1 Rio2, N-terminal Sulfolobus_pRN PF05584.11 gi|330508096|ref|YP_004384524.1| - 0.013 15.6 0.1 0.017 15.2 0.1 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_43 PF09904.9 gi|330508096|ref|YP_004384524.1| - 0.015 15.2 0.0 0.023 14.6 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix FUR PF01475.19 gi|330508096|ref|YP_004384524.1| - 0.02 15.0 0.0 0.027 14.6 0.0 1.3 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_40 PF14493.6 gi|330508096|ref|YP_004384524.1| - 0.025 15.0 0.0 0.035 14.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|330508096|ref|YP_004384524.1| - 0.035 14.5 0.1 0.13 12.7 0.0 1.9 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF4364 PF14277.6 gi|330508096|ref|YP_004384524.1| - 0.055 13.2 0.0 0.079 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Rrf2 PF02082.20 gi|330508096|ref|YP_004384524.1| - 0.065 13.6 0.1 0.096 13.1 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator Penicillinase_R PF03965.16 gi|330508096|ref|YP_004384524.1| - 0.068 13.5 0.3 0.095 13.1 0.3 1.3 1 0 0 1 1 1 0 Penicillinase repressor DUF742 PF05331.11 gi|330508096|ref|YP_004384524.1| - 0.088 12.6 0.0 0.094 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) DUF3116 PF11313.8 gi|330508096|ref|YP_004384524.1| - 0.11 12.4 0.1 0.19 11.6 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) DUF1670 PF07900.11 gi|330508097|ref|YP_004384525.1| - 3.2e-32 111.7 0.0 3.6e-32 111.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_23 PF13384.6 gi|330508097|ref|YP_004384525.1| - 0.001 18.8 0.0 2.4 8.0 0.0 3.1 2 1 1 3 3 3 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|330508097|ref|YP_004384525.1| - 0.0014 18.3 0.1 0.19 11.4 0.0 2.7 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|330508097|ref|YP_004384525.1| - 0.004 16.7 0.0 3.4 7.3 0.0 3.3 4 0 0 4 4 4 2 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|330508097|ref|YP_004384525.1| - 0.018 15.1 0.0 14 5.8 0.0 3.0 2 1 1 3 3 3 0 Winged helix-turn helix PsbH PF00737.20 gi|330508097|ref|YP_004384525.1| - 0.054 13.2 0.0 0.09 12.5 0.0 1.3 1 0 0 1 1 1 0 Photosystem II 10 kDa phosphoprotein DUF1670 PF07900.11 gi|330508098|ref|YP_004384526.1| - 5e-21 75.1 0.2 5.3e-21 75.0 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) ABC_tran PF00005.27 gi|330508099|ref|YP_004384527.1| - 2.4e-25 89.6 0.1 3.3e-25 89.2 0.1 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|330508099|ref|YP_004384527.1| - 1.6e-15 57.3 0.2 3.4e-15 56.3 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|330508099|ref|YP_004384527.1| - 6.2e-05 22.5 0.0 9.9e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain ResIII PF04851.15 gi|330508099|ref|YP_004384527.1| - 0.0011 19.0 0.0 0.0015 18.6 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|330508099|ref|YP_004384527.1| - 0.019 14.2 0.0 0.025 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_21 PF13304.6 gi|330508099|ref|YP_004384527.1| - 0.037 13.8 0.1 0.42 10.4 0.0 2.1 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system Mg_chelatase PF01078.21 gi|330508099|ref|YP_004384527.1| - 0.04 13.3 0.0 0.34 10.3 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATP-synt_ab PF00006.25 gi|330508099|ref|YP_004384527.1| - 0.071 12.8 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 gi|330508099|ref|YP_004384527.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region SAM_3 PF18016.1 gi|330508099|ref|YP_004384527.1| - 0.15 11.8 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) ABC_tran PF00005.27 gi|330508100|ref|YP_004384528.1| - 5.3e-33 114.4 0.0 7.5e-33 113.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|330508100|ref|YP_004384528.1| - 1.3e-05 24.8 0.0 2.3e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|330508100|ref|YP_004384528.1| - 5.6e-05 23.1 0.3 0.34 10.7 0.0 2.5 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|330508100|ref|YP_004384528.1| - 0.00095 19.6 0.0 0.0014 19.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|330508100|ref|YP_004384528.1| - 0.01 16.1 0.4 0.029 14.7 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|330508100|ref|YP_004384528.1| - 0.013 15.5 0.1 0.034 14.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PRK PF00485.18 gi|330508100|ref|YP_004384528.1| - 0.034 13.9 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Zeta_toxin PF06414.12 gi|330508100|ref|YP_004384528.1| - 0.057 12.7 0.0 0.14 11.5 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin RsgA_GTPase PF03193.16 gi|330508100|ref|YP_004384528.1| - 0.064 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ATP-synt_ab PF00006.25 gi|330508100|ref|YP_004384528.1| - 0.08 12.6 0.0 0.2 11.3 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 gi|330508100|ref|YP_004384528.1| - 0.084 13.3 0.0 0.18 12.2 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|330508100|ref|YP_004384528.1| - 0.11 12.6 0.0 0.31 11.1 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF11 PF01345.18 gi|330508101|ref|YP_004384529.1| - 0.00024 21.3 0.0 0.067 13.5 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function DUF11 Top6b_C PF18000.1 gi|330508101|ref|YP_004384529.1| - 0.0059 16.8 0.1 8.2 6.6 0.0 3.2 3 1 0 3 3 3 2 Type 2 DNA topoisomerase 6 subunit B C-terminal domain CARDB PF07705.11 gi|330508101|ref|YP_004384529.1| - 0.0087 16.3 0.0 13 6.1 0.0 3.2 3 0 0 3 3 3 2 CARDB Cupredoxin_1 PF13473.6 gi|330508101|ref|YP_004384529.1| - 0.026 14.7 0.0 6.2 7.0 0.0 2.4 2 0 0 2 2 2 0 Cupredoxin-like domain TRAP_beta PF05753.14 gi|330508101|ref|YP_004384529.1| - 0.09 12.2 0.0 0.43 9.9 0.0 2.0 2 0 0 2 2 2 0 Translocon-associated protein beta (TRAPB) Cupredoxin_1 PF13473.6 gi|330508102|ref|YP_004384530.1| - 0.0023 18.0 1.3 0.25 11.5 0.0 3.3 1 1 0 3 3 3 1 Cupredoxin-like domain SspB PF04386.13 gi|330508102|ref|YP_004384530.1| - 0.092 12.6 1.8 0.18 11.7 1.8 1.6 1 0 0 1 1 1 0 Stringent starvation protein B Sarcoglycan_1 PF04790.13 gi|330508102|ref|YP_004384530.1| - 0.16 11.3 0.1 0.28 10.5 0.1 1.5 1 0 0 1 1 1 0 Sarcoglycan complex subunit protein YtpI PF14007.6 gi|330508103|ref|YP_004384531.1| - 0.38 10.9 2.5 1.3 9.2 2.5 1.8 1 1 0 1 1 1 0 YtpI-like protein DUF3087 PF11286.8 gi|330508103|ref|YP_004384531.1| - 0.44 10.0 1.8 0.82 9.1 0.1 1.9 1 1 2 3 3 3 0 Protein of unknown function (DUF3087) Proton_antipo_N PF00662.20 gi|330508103|ref|YP_004384531.1| - 1.1 9.3 4.7 2.2 8.4 0.4 2.2 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PUA PF01472.20 gi|330508104|ref|YP_004384532.1| - 9.5e-08 31.9 0.1 1.2e-07 31.6 0.1 1.1 1 0 0 1 1 1 1 PUA domain Peripla_BP_2 PF01497.18 gi|330508105|ref|YP_004384533.1| - 2.5e-27 96.0 0.5 5.5e-27 94.9 0.5 1.5 1 1 0 1 1 1 1 Periplasmic binding protein T2SS-T3SS_pil_N PF13629.6 gi|330508105|ref|YP_004384533.1| - 0.12 12.1 0.4 0.23 11.2 0.1 1.6 2 0 0 2 2 2 0 Pilus formation protein N terminal region CobN-Mg_chel PF02514.16 gi|330508106|ref|YP_004384534.1| - 0 1173.6 0.0 0 1173.4 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase HalX PF08663.10 gi|330508106|ref|YP_004384534.1| - 0.26 11.6 2.4 24 5.4 0.3 2.7 2 0 0 2 2 2 0 HalX domain Peripla_BP_2 PF01497.18 gi|330508107|ref|YP_004384535.1| - 2.7e-08 33.7 0.0 3.4e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein MarR PF01047.22 gi|330508108|ref|YP_004384536.1| - 1.4e-08 34.6 0.1 2.7e-08 33.6 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|330508108|ref|YP_004384536.1| - 5.5e-06 25.8 0.0 8.8e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|330508108|ref|YP_004384536.1| - 1.6e-05 24.7 0.0 4.3e-05 23.3 0.0 1.7 1 1 1 2 2 2 1 MarR family TrmB PF01978.19 gi|330508108|ref|YP_004384536.1| - 3.8e-05 23.5 0.0 6e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|330508108|ref|YP_004384536.1| - 0.0013 18.7 0.0 0.003 17.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix PheRS_DBD1 PF18552.1 gi|330508108|ref|YP_004384536.1| - 0.0034 17.1 0.0 0.007 16.1 0.0 1.6 1 1 1 2 2 2 1 PheRS DNA binding domain 1 HTH_IclR PF09339.10 gi|330508108|ref|YP_004384536.1| - 0.0089 15.8 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|330508108|ref|YP_004384536.1| - 0.011 15.4 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PaaX PF07848.12 gi|330508108|ref|YP_004384536.1| - 0.013 15.7 0.2 0.035 14.3 0.0 1.7 2 0 0 2 2 2 0 PaaX-like protein HTH_34 PF13601.6 gi|330508108|ref|YP_004384536.1| - 0.015 15.5 0.0 0.047 13.9 0.0 1.9 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_41 PF14502.6 gi|330508108|ref|YP_004384536.1| - 0.028 14.1 0.1 0.051 13.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain EAP30 PF04157.16 gi|330508108|ref|YP_004384536.1| - 0.035 13.4 0.0 0.044 13.1 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_11 PF08279.12 gi|330508108|ref|YP_004384536.1| - 0.072 13.0 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|330508108|ref|YP_004384536.1| - 0.087 12.8 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Ter PF05472.11 gi|330508108|ref|YP_004384536.1| - 0.097 11.7 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 DNA replication terminus site-binding protein (Ter protein) DUF4364 PF14277.6 gi|330508109|ref|YP_004384537.1| - 0.0054 16.5 0.0 0.0066 16.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) S10_plectin PF03501.15 gi|330508109|ref|YP_004384537.1| - 0.0069 16.4 0.0 0.0078 16.3 0.0 1.0 1 0 0 1 1 1 1 Plectin/S10 domain HTH_45 PF14947.6 gi|330508109|ref|YP_004384537.1| - 0.011 15.7 0.0 0.013 15.5 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|330508109|ref|YP_004384537.1| - 0.035 14.6 0.0 0.045 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|330508109|ref|YP_004384537.1| - 0.05 13.7 0.1 0.05 13.7 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation TrmB PF01978.19 gi|330508109|ref|YP_004384537.1| - 0.058 13.3 0.0 0.079 12.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1275 PF06912.11 gi|330508110|ref|YP_004384538.1| - 0.078 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) zinc_ribbon_2 PF13240.6 gi|330508111|ref|YP_004384539.1| - 2.1e-07 30.4 3.6 3.4e-07 29.8 3.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|330508111|ref|YP_004384539.1| - 3.6e-05 23.0 2.6 5.4e-05 22.5 2.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|330508111|ref|YP_004384539.1| - 0.00047 20.1 1.0 0.00071 19.6 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|330508111|ref|YP_004384539.1| - 0.13 13.0 3.6 0.2 12.4 3.6 1.3 1 0 0 1 1 1 0 zinc-ribbon family HscB_4_cys PF18256.1 gi|330508111|ref|YP_004384539.1| - 0.23 11.3 5.8 1.2 9.0 5.8 2.1 1 1 1 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif DDE_Tnp_1 PF01609.21 gi|330508112|ref|YP_004384540.1| - 1.9e-25 89.8 0.0 3.3e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|330508112|ref|YP_004384540.1| - 0.014 14.7 0.3 0.021 14.1 0.3 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|330508112|ref|YP_004384540.1| - 0.019 13.3 0.0 0.03 12.6 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 Tudor_FRX1 PF18336.1 gi|330508112|ref|YP_004384540.1| - 0.075 13.0 1.0 1.4 8.9 0.1 2.8 3 0 0 3 3 3 0 Fragile X mental retardation Tudor domain DDE_Tnp_IS66 PF03050.14 gi|330508114|ref|YP_004384542.1| - 9.2e-49 166.4 0.0 1.1e-48 166.2 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.7 gi|330508114|ref|YP_004384542.1| - 8.7e-06 26.0 4.7 2.7e-05 24.4 4.7 1.8 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.6 gi|330508114|ref|YP_004384542.1| - 0.0031 17.8 0.0 0.0079 16.4 0.0 1.7 1 1 1 2 2 2 1 DDE domain Transposase_mut PF00872.18 gi|330508114|ref|YP_004384542.1| - 0.11 11.3 0.0 2.5 6.8 0.0 2.2 2 0 0 2 2 2 0 Transposase, Mutator family DUF5087 PF17006.5 gi|330508116|ref|YP_004384544.1| - 0.0062 16.1 0.2 0.008 15.8 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5087) ABC2_membrane PF01061.24 gi|330508117|ref|YP_004384545.1| - 5.7e-25 88.0 14.9 5.7e-25 88.0 14.9 2.0 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330508117|ref|YP_004384545.1| - 2.7e-05 23.4 24.4 2.7e-05 23.4 24.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF4820 PF16091.5 gi|330508117|ref|YP_004384545.1| - 0.6 9.4 1.1 1.1 8.6 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4820) PAP2_C PF14360.6 gi|330508117|ref|YP_004384545.1| - 1.6 9.3 5.8 0.46 11.1 1.8 2.2 2 1 0 2 2 2 0 PAP2 superfamily C-terminal ABC_tran PF00005.27 gi|330508118|ref|YP_004384546.1| - 1.1e-34 119.9 0.0 1.6e-34 119.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330508118|ref|YP_004384546.1| - 1.6e-15 57.8 0.2 5.1e-08 33.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|330508118|ref|YP_004384546.1| - 0.00013 22.6 0.0 0.00017 22.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|330508118|ref|YP_004384546.1| - 0.00049 19.9 0.0 0.65 9.6 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|330508118|ref|YP_004384546.1| - 0.0053 16.2 0.0 0.018 14.5 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|330508118|ref|YP_004384546.1| - 0.015 15.2 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|330508118|ref|YP_004384546.1| - 0.027 14.9 0.0 0.099 13.1 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|330508118|ref|YP_004384546.1| - 0.028 14.6 0.0 0.052 13.8 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|330508118|ref|YP_004384546.1| - 0.066 13.0 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|330508118|ref|YP_004384546.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|330508118|ref|YP_004384546.1| - 0.14 11.1 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|330508118|ref|YP_004384546.1| - 0.16 11.7 0.2 0.26 11.0 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_lid_2 PF17863.1 gi|330508119|ref|YP_004384547.1| - 3.2e-23 81.4 0.2 9.8e-23 79.8 0.2 1.9 1 0 0 1 1 1 1 AAA lid domain VWA_2 PF13519.6 gi|330508119|ref|YP_004384547.1| - 1.1e-14 55.0 0.0 6.1e-14 52.6 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|330508119|ref|YP_004384547.1| - 3.2e-10 40.1 0.0 2.2e-06 27.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) VWA PF00092.28 gi|330508119|ref|YP_004384547.1| - 3.4e-09 37.2 0.0 9.1e-09 35.8 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|330508119|ref|YP_004384547.1| - 8.2e-08 31.9 0.1 6.2e-07 29.0 0.0 2.4 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|330508119|ref|YP_004384547.1| - 1.3e-05 24.5 0.2 0.00059 19.0 0.1 2.9 2 1 0 2 2 2 1 MCM P-loop domain Mg_chelatase_C PF13335.6 gi|330508119|ref|YP_004384547.1| - 0.0035 18.0 0.6 0.017 15.8 0.6 2.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI C-terminal Sigma54_activat PF00158.26 gi|330508119|ref|YP_004384547.1| - 0.0039 16.9 0.0 0.19 11.4 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|330508119|ref|YP_004384547.1| - 0.0041 17.5 0.4 0.034 14.5 0.1 2.7 2 2 1 3 3 2 1 AAA ATPase domain AAA_3 PF07726.11 gi|330508119|ref|YP_004384547.1| - 0.028 14.3 0.0 2.9 7.8 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|330508119|ref|YP_004384547.1| - 0.031 14.6 0.0 0.17 12.1 0.0 2.3 1 1 0 1 1 1 0 AAA domain VWA_3 PF13768.6 gi|330508119|ref|YP_004384547.1| - 0.088 12.7 0.0 0.34 10.8 0.0 2.1 1 0 0 1 1 1 0 von Willebrand factor type A domain DDHD PF02862.17 gi|330508119|ref|YP_004384547.1| - 0.16 12.1 1.7 0.25 11.5 1.7 1.3 1 0 0 1 1 1 0 DDHD domain Peptidase_S49_N PF08496.10 gi|330508119|ref|YP_004384547.1| - 1.1 9.3 6.5 13 5.8 4.9 2.4 2 0 0 2 2 2 0 Peptidase family S49 N-terminal RR_TM4-6 PF06459.12 gi|330508119|ref|YP_004384547.1| - 1.3 8.8 7.9 2.3 8.0 7.9 1.3 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 Presenilin PF01080.17 gi|330508119|ref|YP_004384547.1| - 2.8 6.6 5.8 4 6.1 5.8 1.1 1 0 0 1 1 1 0 Presenilin DUF4834 PF16118.5 gi|330508119|ref|YP_004384547.1| - 4.4 8.3 5.9 9.2 7.3 5.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) Hid1 PF12722.7 gi|330508119|ref|YP_004384547.1| - 9.5 4.2 6.7 13 3.7 6.7 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein FecCD PF01032.18 gi|330508120|ref|YP_004384548.1| - 7.6e-94 314.2 35.3 9.4e-94 313.9 35.3 1.1 1 0 0 1 1 1 1 FecCD transport family MWFE PF15879.5 gi|330508120|ref|YP_004384548.1| - 0.58 10.4 0.1 0.58 10.4 0.1 3.5 4 0 0 4 4 4 0 NADH-ubiquinone oxidoreductase MWFE subunit Methyltransf_25 PF13649.6 gi|330508122|ref|YP_004384550.1| - 4.9e-21 75.2 0.0 8.3e-21 74.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330508122|ref|YP_004384550.1| - 4.7e-20 72.0 0.0 7.6e-20 71.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330508122|ref|YP_004384550.1| - 5.8e-20 71.6 0.0 1.5e-19 70.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330508122|ref|YP_004384550.1| - 9.8e-14 51.5 0.0 1.3e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330508122|ref|YP_004384550.1| - 1.8e-13 51.1 0.0 2.8e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330508122|ref|YP_004384550.1| - 1.7e-12 47.2 0.0 2.3e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|330508122|ref|YP_004384550.1| - 0.00014 21.3 0.0 0.0002 20.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|330508122|ref|YP_004384550.1| - 0.00096 18.2 0.0 0.0015 17.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|330508122|ref|YP_004384550.1| - 0.011 15.3 0.1 0.075 12.6 0.1 2.1 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW NodS PF05401.11 gi|330508122|ref|YP_004384550.1| - 0.021 14.4 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) NNMT_PNMT_TEMT PF01234.17 gi|330508122|ref|YP_004384550.1| - 0.022 14.0 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family CheR PF01739.18 gi|330508122|ref|YP_004384550.1| - 0.066 12.7 0.0 3.7 7.0 0.0 2.1 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_8 PF05148.15 gi|330508122|ref|YP_004384550.1| - 0.096 12.5 0.0 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|330508122|ref|YP_004384550.1| - 0.16 10.5 0.0 0.34 9.4 0.0 1.4 2 0 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|330508122|ref|YP_004384550.1| - 0.19 11.2 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|330508122|ref|YP_004384550.1| - 0.25 10.7 0.1 0.39 10.1 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) HATPase_c PF02518.26 gi|330508123|ref|YP_004384551.1| - 9.3e-30 103.4 0.0 1.9e-29 102.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|330508123|ref|YP_004384551.1| - 2.8e-28 98.3 2.7 3.4e-28 98.1 1.1 2.1 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.25 gi|330508123|ref|YP_004384551.1| - 1.1e-18 67.1 3.5 2.1e-18 66.1 0.2 2.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain DUF1043 PF06295.12 gi|330508123|ref|YP_004384551.1| - 0.17 11.8 0.8 0.59 10.2 0.8 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) MerC PF03203.14 gi|330508123|ref|YP_004384551.1| - 0.28 11.6 17.3 4.1 7.9 5.6 2.9 2 1 1 3 3 3 0 MerC mercury resistance protein DUF745 PF05335.13 gi|330508123|ref|YP_004384551.1| - 0.29 10.8 7.7 0.44 10.2 7.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) Diphthami_syn_2 PF01902.17 gi|330508125|ref|YP_004384553.1| - 3.4e-49 167.3 0.0 4.1e-49 167.0 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase PLDc_2 PF13091.6 gi|330508127|ref|YP_004384555.1| - 3.2e-08 33.5 0.0 1.6e-05 24.8 0.0 2.6 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|330508127|ref|YP_004384555.1| - 0.8 10.0 4.3 23 5.4 1.8 2.9 2 1 0 2 2 2 0 Phospholipase D Active site motif AA_kinase PF00696.28 gi|330508128|ref|YP_004384556.1| - 2e-26 93.1 0.0 2.8e-26 92.6 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Thymidylate_kin PF02223.17 gi|330508129|ref|YP_004384557.1| - 0.0012 18.6 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 Thymidylate kinase cobW PF02492.19 gi|330508129|ref|YP_004384557.1| - 0.0059 16.2 0.0 0.023 14.3 0.0 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CMD PF02627.20 gi|330508130|ref|YP_004384558.1| - 1.2e-13 50.9 0.2 1.3e-13 50.8 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Big_10 PF17964.1 gi|330508130|ref|YP_004384558.1| - 0.077 13.0 0.0 0.091 12.7 0.0 1.0 1 0 0 1 1 1 0 Bacterial Ig domain Molybdopterin PF00384.22 gi|330508131|ref|YP_004384559.1| - 3.6e-89 299.7 0.0 4.3e-89 299.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|330508131|ref|YP_004384559.1| - 3.2e-27 94.8 0.0 8.1e-27 93.4 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|330508131|ref|YP_004384559.1| - 3.4e-13 49.4 0.4 6.7e-13 48.4 0.4 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Mrr_cat PF04471.12 gi|330508132|ref|YP_004384560.1| - 1.6e-06 28.1 0.1 2.4e-06 27.6 0.1 1.3 1 0 0 1 1 1 1 Restriction endonuclease AHJR-like PF18743.1 gi|330508132|ref|YP_004384560.1| - 0.0051 16.4 0.0 0.0083 15.7 0.0 1.4 1 0 0 1 1 1 1 REase_AHJR-like NERD PF08378.11 gi|330508132|ref|YP_004384560.1| - 0.0083 16.6 0.1 0.013 15.9 0.1 1.5 1 1 0 1 1 1 1 Nuclease-related domain Hjc PF01870.18 gi|330508132|ref|YP_004384560.1| - 0.022 14.8 0.1 0.035 14.1 0.1 1.4 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Stig1 PF04885.13 gi|330508133|ref|YP_004384561.1| - 1.6e-12 48.1 42.3 9.1e-06 26.2 21.8 2.7 1 1 2 3 3 3 2 Stigma-specific protein, Stig1 Thiamine_BP PF01910.17 gi|330508134|ref|YP_004384562.1| - 7e-25 86.8 0.1 7.9e-25 86.6 0.1 1.0 1 0 0 1 1 1 1 Thiamine-binding protein UPF0047 PF01894.17 gi|330508135|ref|YP_004384563.1| - 1.7e-31 108.7 0.0 2.1e-31 108.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 SNase PF00565.17 gi|330508136|ref|YP_004384564.1| - 2.7e-10 40.7 0.0 3.6e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue DoxA PF07680.11 gi|330508136|ref|YP_004384564.1| - 0.11 12.4 0.0 0.41 10.5 0.0 1.8 2 0 0 2 2 2 0 TQO small subunit DoxA E1-E2_ATPase PF00122.20 gi|330508137|ref|YP_004384565.1| - 6.2e-42 143.2 2.4 6.2e-42 143.2 2.4 3.3 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|330508137|ref|YP_004384565.1| - 1.5e-15 58.0 0.3 4.9e-15 56.4 0.0 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.21 gi|330508137|ref|YP_004384565.1| - 1.2e-12 47.9 14.3 1.2e-12 47.9 14.3 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.26 gi|330508137|ref|YP_004384565.1| - 1.3e-07 31.2 0.1 3e-07 30.0 0.1 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|330508137|ref|YP_004384565.1| - 0.051 13.3 0.3 0.86 9.3 0.6 2.4 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase Dak1_2 PF13684.6 gi|330508137|ref|YP_004384565.1| - 0.084 11.9 0.0 0.2 10.7 0.0 1.6 1 0 0 1 1 1 0 Dihydroxyacetone kinase family S-layer PF07752.11 gi|330508138|ref|YP_004384566.1| - 1.1e-190 630.9 20.3 1.8e-96 322.2 6.3 2.3 2 0 0 2 2 2 2 S-layer protein PEGA PF08308.11 gi|330508138|ref|YP_004384566.1| - 2.8e-10 39.9 4.6 1.4e-06 28.1 0.1 3.8 4 0 0 4 4 4 2 PEGA domain CarbopepD_reg_2 PF13715.6 gi|330508138|ref|YP_004384566.1| - 3.9e-08 33.2 8.2 5.5e-05 23.1 0.5 3.7 3 0 0 3 3 3 2 CarboxypepD_reg-like domain CarboxypepD_reg PF13620.6 gi|330508138|ref|YP_004384566.1| - 2.3e-05 24.6 21.0 0.00017 21.8 0.1 4.7 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain Transglut_C PF00927.22 gi|330508138|ref|YP_004384566.1| - 0.0012 18.9 0.5 0.015 15.4 0.2 2.8 2 1 0 2 2 2 1 Transglutaminase family, C-terminal ig like domain A2M PF00207.22 gi|330508138|ref|YP_004384566.1| - 0.036 13.9 0.1 0.51 10.2 0.0 2.6 2 0 0 2 2 2 0 Alpha-2-macroglobulin family TFIIA PF03153.13 gi|330508138|ref|YP_004384566.1| - 6.9 6.6 25.1 18 5.2 25.1 1.6 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit ABC_tran PF00005.27 gi|330508139|ref|YP_004384567.1| - 7.9e-34 117.1 0.0 1.4e-33 116.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330508139|ref|YP_004384567.1| - 3e-08 33.9 0.2 0.0029 17.5 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|330508139|ref|YP_004384567.1| - 6.3e-08 33.2 0.0 1.1e-07 32.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|330508139|ref|YP_004384567.1| - 4.7e-06 27.2 0.0 7.2e-05 23.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|330508139|ref|YP_004384567.1| - 9.5e-05 22.1 0.1 0.00019 21.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|330508139|ref|YP_004384567.1| - 0.00046 20.0 0.0 0.024 14.3 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|330508139|ref|YP_004384567.1| - 0.0028 17.1 0.0 0.022 14.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain G-alpha PF00503.20 gi|330508139|ref|YP_004384567.1| - 0.067 12.3 0.0 0.083 12.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit RsgA_GTPase PF03193.16 gi|330508139|ref|YP_004384567.1| - 0.071 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase FdtA PF05523.11 gi|330508139|ref|YP_004384567.1| - 0.092 12.5 0.1 0.42 10.3 0.0 1.9 2 0 0 2 2 2 0 WxcM-like, C-terminal ABC2_membrane PF01061.24 gi|330508140|ref|YP_004384568.1| - 2e-36 125.4 23.9 3.1e-36 124.8 23.9 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330508140|ref|YP_004384568.1| - 3.8e-15 55.9 30.3 3.8e-15 55.9 30.3 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|330508140|ref|YP_004384568.1| - 9.5e-08 31.7 18.3 1.2e-07 31.3 18.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein SNase PF00565.17 gi|330508141|ref|YP_004384569.1| - 0.04 14.4 0.0 0.078 13.5 0.0 1.4 1 0 0 1 1 1 0 Staphylococcal nuclease homologue DUF3636 PF12331.8 gi|330508141|ref|YP_004384569.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3636) Exo_endo_phos PF03372.23 gi|330508142|ref|YP_004384570.1| - 7.7e-08 32.1 0.0 6.5e-07 29.1 0.0 2.2 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family NUDIX PF00293.28 gi|330508143|ref|YP_004384571.1| - 7.3e-13 48.7 0.5 1.2e-12 48.0 0.5 1.3 1 1 0 1 1 1 1 NUDIX domain 4HFCP_synth PF04476.13 gi|330508144|ref|YP_004384572.1| - 1.7e-87 293.0 0.2 1.9e-87 292.8 0.2 1.0 1 0 0 1 1 1 1 4-HFC-P synthase His_biosynth PF00977.21 gi|330508145|ref|YP_004384573.1| - 3.1e-21 75.9 0.0 4.8e-21 75.3 0.0 1.3 1 1 0 1 1 1 1 Histidine biosynthesis protein OrfB_Zn_ribbon PF07282.11 gi|330508146|ref|YP_004384574.1| - 1.6e-21 76.0 0.1 4.4e-21 74.6 0.1 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330508146|ref|YP_004384574.1| - 1.8e-21 76.6 0.0 3.7e-21 75.6 0.0 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|330508146|ref|YP_004384574.1| - 1.1e-07 31.2 0.7 3e-07 29.8 0.7 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|330508146|ref|YP_004384574.1| - 0.0065 16.5 0.4 0.011 15.7 0.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon Pestivirus_E2 PF16329.5 gi|330508146|ref|YP_004384574.1| - 0.043 12.7 0.1 0.064 12.1 0.1 1.1 1 0 0 1 1 1 0 Pestivirus envelope glycoprotein E2 TF_Zn_Ribbon PF08271.12 gi|330508146|ref|YP_004384574.1| - 0.11 12.1 0.8 0.45 10.1 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|330508146|ref|YP_004384574.1| - 0.14 11.8 0.9 0.25 11.0 0.9 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|330508146|ref|YP_004384574.1| - 0.26 10.7 0.9 1.4 8.4 0.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain C1_1 PF00130.22 gi|330508146|ref|YP_004384574.1| - 0.41 10.6 2.9 0.34 10.8 0.3 2.0 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RecR PF02132.15 gi|330508146|ref|YP_004384574.1| - 0.44 10.2 5.1 5.7 6.6 0.1 2.8 2 1 1 3 3 3 0 RecR protein Transposase_20 PF02371.16 gi|330508147|ref|YP_004384575.1| - 2.9e-25 88.4 0.1 5.4e-25 87.5 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330508147|ref|YP_004384575.1| - 3.9e-20 72.3 0.0 7e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 Transposase Init_tRNA_PT PF04179.12 gi|330508147|ref|YP_004384575.1| - 0.041 14.2 1.2 0.081 13.2 0.1 2.0 2 0 0 2 2 2 0 Rit1 DUSP-like domain AIRS_C PF02769.22 gi|330508149|ref|YP_004384577.1| - 9.1e-19 68.1 0.0 1.6e-18 67.3 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|330508149|ref|YP_004384577.1| - 2.6e-15 56.9 0.0 4.8e-15 56.0 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF296 PF03479.15 gi|330508150|ref|YP_004384578.1| - 6.2e-19 68.4 0.4 7.2e-19 68.2 0.4 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain SepA PF17080.5 gi|330508150|ref|YP_004384578.1| - 0.16 12.3 0.0 0.29 11.5 0.0 1.4 2 0 0 2 2 2 0 Multidrug Resistance efflux pump PolC_DP2 PF03833.13 gi|330508151|ref|YP_004384579.1| - 0 1248.8 0.0 0 1246.5 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 NOA36 PF06524.12 gi|330508151|ref|YP_004384579.1| - 0.038 13.3 2.9 0.072 12.4 2.9 1.3 1 0 0 1 1 1 0 NOA36 protein DZR PF12773.7 gi|330508151|ref|YP_004384579.1| - 0.042 13.9 21.2 0.089 12.8 0.6 3.0 2 1 0 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|330508151|ref|YP_004384579.1| - 0.058 13.4 0.1 0.058 13.4 0.1 3.1 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|330508151|ref|YP_004384579.1| - 1.8 8.1 28.3 0.34 10.4 3.5 5.2 5 1 0 5 5 5 0 zinc-ribbon domain CpXC PF14353.6 gi|330508151|ref|YP_004384579.1| - 2.5 8.2 5.7 51 3.9 0.0 4.2 4 0 0 4 4 4 0 CpXC protein zinc-ribbons_6 PF07191.12 gi|330508151|ref|YP_004384579.1| - 3.2 7.8 16.2 4.2 7.4 0.1 2.8 2 1 0 2 2 2 0 zinc-ribbons zf-C4_Topoisom PF01396.19 gi|330508151|ref|YP_004384579.1| - 5.9 6.8 14.1 0.97 9.3 0.2 3.9 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Polbeta PF18765.1 gi|330508152|ref|YP_004384580.1| - 3.1e-16 59.3 0.1 4.1e-16 58.8 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase SSV1_ORF_D-335 PF07935.11 gi|330508153|ref|YP_004384581.1| - 0.14 12.5 0.6 0.67 10.3 0.1 2.2 2 0 0 2 2 2 0 ORF D-335-like protein HTH_Tnp_1 PF01527.20 gi|330508154|ref|YP_004384582.1| - 9.9e-11 41.8 0.1 1.6e-10 41.1 0.0 1.5 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.6 gi|330508154|ref|YP_004384582.1| - 0.002 17.8 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|330508154|ref|YP_004384582.1| - 0.0046 17.0 0.0 0.0099 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PKcGMP_CC PF16808.5 gi|330508154|ref|YP_004384582.1| - 0.033 14.1 0.3 0.074 12.9 0.3 1.6 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4733 PF15878.5 gi|330508154|ref|YP_004384582.1| - 0.062 13.8 0.1 0.13 12.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4733) rve PF00665.26 gi|330508155|ref|YP_004384583.1| - 1.4e-25 89.8 0.0 2.2e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 gi|330508155|ref|YP_004384583.1| - 2.7e-19 69.1 0.3 1.9e-18 66.3 0.3 2.1 2 0 0 2 2 2 1 HTH-like domain rve_3 PF13683.6 gi|330508155|ref|YP_004384583.1| - 3.8e-16 58.6 0.1 9.1e-16 57.4 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|330508155|ref|YP_004384583.1| - 4.7e-08 33.1 3.6 9.4e-08 32.1 2.4 2.1 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 gi|330508155|ref|YP_004384583.1| - 0.00016 21.9 0.3 0.00028 21.1 0.3 1.4 1 0 0 1 1 1 1 DDE domain GP3_package PF16677.5 gi|330508155|ref|YP_004384583.1| - 0.027 14.6 0.1 12 6.1 0.0 2.4 2 0 0 2 2 2 0 DNA-packaging protein gp3 HTH_Tnp_Tc3_2 PF01498.18 gi|330508155|ref|YP_004384583.1| - 0.041 14.1 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_Tnp_1_2 PF13022.6 gi|330508155|ref|YP_004384583.1| - 0.049 13.8 0.1 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase DDE_Tnp_1 PF01609.21 gi|330508156|ref|YP_004384584.1| - 2e-20 73.4 0.1 3.3e-20 72.6 0.1 1.3 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|330508156|ref|YP_004384584.1| - 0.032 14.3 0.2 1.4 8.9 0.0 2.2 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|330508156|ref|YP_004384584.1| - 0.056 11.7 0.3 0.25 9.6 0.3 1.8 1 1 0 1 1 1 0 Transposase DDE domain group 1 Transposase_20 PF02371.16 gi|330508157|ref|YP_004384585.1| - 3.5e-25 88.1 0.0 8.2e-25 86.9 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330508157|ref|YP_004384585.1| - 1.1e-05 25.3 1.2 3.9e-05 23.6 0.3 2.2 2 0 0 2 2 2 1 Transposase YfkB PF08756.10 gi|330508157|ref|YP_004384585.1| - 0.0041 16.9 0.1 0.01 15.7 0.1 1.6 1 0 0 1 1 1 1 YfkB-like domain DUF2018 PF09442.10 gi|330508157|ref|YP_004384585.1| - 0.15 13.1 1.3 2.8 9.0 1.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF2018) DNA_pol_A PF00476.20 gi|330508158|ref|YP_004384586.1| - 2.9e-74 250.4 0.0 6e-74 249.3 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase family A DNA_pol_A_exo1 PF01612.20 gi|330508158|ref|YP_004384586.1| - 0.0003 20.5 0.0 0.00062 19.5 0.0 1.5 1 0 0 1 1 1 1 3'-5' exonuclease DUF4258 PF14076.6 gi|330508159|ref|YP_004384587.1| - 4.5e-18 65.4 0.0 6e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) BrnT_toxin PF04365.13 gi|330508159|ref|YP_004384587.1| - 0.055 13.8 0.0 0.088 13.2 0.0 1.4 1 1 0 1 1 1 0 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system MqsA_antitoxin PF15731.5 gi|330508160|ref|YP_004384588.1| - 0.025 14.7 0.0 0.027 14.6 0.0 1.1 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HicB_lk_antitox PF15919.5 gi|330508161|ref|YP_004384589.1| - 0.00011 22.3 0.0 0.00012 22.2 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|330508162|ref|YP_004384590.1| - 0.0024 17.9 0.0 0.0026 17.7 0.0 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|330508163|ref|YP_004384591.1| - 2.2e-07 31.0 0.0 2.5e-07 30.9 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Aminotran_1_2 PF00155.21 gi|330508164|ref|YP_004384592.1| - 3.3e-56 191.0 0.0 3.7e-56 190.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|330508164|ref|YP_004384592.1| - 1.1e-06 27.5 0.0 4.2e-06 25.6 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|330508164|ref|YP_004384592.1| - 4.8e-06 25.8 0.0 7.4e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|330508164|ref|YP_004384592.1| - 1.5e-05 24.5 0.0 2.1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Radical_SAM PF04055.21 gi|330508164|ref|YP_004384592.1| - 0.15 12.4 0.1 0.62 10.4 0.0 2.0 2 0 0 2 2 2 0 Radical SAM superfamily Flu_PA PF00603.17 gi|330508164|ref|YP_004384592.1| - 0.23 9.5 0.0 0.32 9.1 0.0 1.1 1 0 0 1 1 1 0 Influenza RNA-dependent RNA polymerase subunit PA GCS2 PF04107.13 gi|330508165|ref|YP_004384593.1| - 4.5e-39 134.5 0.0 5.9e-39 134.1 0.0 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) GCS PF03074.16 gi|330508165|ref|YP_004384593.1| - 0.012 15.0 0.0 0.077 12.4 0.0 2.0 2 0 0 2 2 2 0 Glutamate-cysteine ligase AdoMet_MTase PF07757.13 gi|330508165|ref|YP_004384593.1| - 0.018 15.4 0.0 0.13 12.6 0.0 2.1 1 1 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase CxxCxxCC PF03692.15 gi|330508166|ref|YP_004384594.1| - 4.7e-08 33.6 0.1 9.5e-08 32.6 0.1 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain RimK PF08443.11 gi|330508167|ref|YP_004384595.1| - 6.4e-12 45.5 0.0 1.6e-11 44.1 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|330508167|ref|YP_004384595.1| - 1.5e-07 31.2 0.0 2.4e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|330508167|ref|YP_004384595.1| - 1.5e-07 31.6 0.0 2.6e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain R2K_3 PF14243.6 gi|330508167|ref|YP_004384595.1| - 0.0001 22.4 0.0 0.00025 21.1 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 R2K_2 PF18299.1 gi|330508167|ref|YP_004384595.1| - 0.00072 19.4 0.0 0.0024 17.7 0.1 1.9 2 1 0 2 2 2 1 ATP-grasp domain, R2K clade family 2 TTL PF03133.15 gi|330508167|ref|YP_004384595.1| - 0.0072 15.5 0.0 0.081 12.0 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_ST PF14397.6 gi|330508167|ref|YP_004384595.1| - 0.011 15.1 0.0 0.85 8.8 0.0 2.2 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|330508167|ref|YP_004384595.1| - 0.1 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain ARA70 PF12489.8 gi|330508167|ref|YP_004384595.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Nuclear coactivator RLAN PF14401.6 gi|330508168|ref|YP_004384596.1| - 1.5e-08 34.4 0.1 2.8e-08 33.6 0.1 1.5 1 1 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain Lipocalin PF00061.23 gi|330508168|ref|YP_004384596.1| - 0.13 12.5 0.4 0.42 10.8 0.1 1.9 2 0 0 2 2 2 0 Lipocalin / cytosolic fatty-acid binding protein family Thioredox_DsbH PF03190.15 gi|330508169|ref|YP_004384597.1| - 3.2e-76 254.8 0.0 5.7e-76 254.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|330508169|ref|YP_004384597.1| - 1.6e-10 41.0 0.0 3e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|330508169|ref|YP_004384597.1| - 9.5e-08 31.7 0.4 0.0021 17.3 0.0 2.3 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.13 gi|330508169|ref|YP_004384597.1| - 4.9e-06 25.8 0.2 0.066 12.3 0.0 2.4 1 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 Glyco_hydro_9 PF00759.19 gi|330508169|ref|YP_004384597.1| - 0.00032 20.3 2.0 0.0049 16.4 2.1 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 9 C5-epim_C PF06662.13 gi|330508169|ref|YP_004384597.1| - 0.004 16.7 0.1 0.58 9.6 0.1 3.0 3 0 0 3 3 3 1 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_76 PF03663.14 gi|330508169|ref|YP_004384597.1| - 0.0073 15.9 1.5 2.4 7.6 0.1 2.4 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 LANC_like PF05147.13 gi|330508169|ref|YP_004384597.1| - 0.018 13.6 0.0 0.05 12.2 0.0 1.7 1 0 0 1 1 1 0 Lanthionine synthetase C-like protein Glyco_hydro_127 PF07944.12 gi|330508169|ref|YP_004384597.1| - 0.028 12.9 0.4 1.7 7.0 0.0 2.1 2 0 0 2 2 2 0 Beta-L-arabinofuranosidase, GH127 Gpr1_Fun34_YaaH PF01184.19 gi|330508171|ref|YP_004384599.1| - 2.1e-41 141.8 21.6 2.5e-41 141.6 21.6 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family DUF2938 PF11158.8 gi|330508171|ref|YP_004384599.1| - 0.027 14.0 5.9 0.022 14.2 4.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2938) UPF0047 PF01894.17 gi|330508172|ref|YP_004384600.1| - 3.6e-39 133.5 0.0 4.2e-39 133.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Aminotran_4 PF01063.19 gi|330508173|ref|YP_004384601.1| - 2.2e-54 184.7 0.0 2.6e-54 184.4 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV DMRL_synthase PF00885.19 gi|330508174|ref|YP_004384602.1| - 1.6e-32 112.3 0.3 1.9e-32 112.0 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.21 gi|330508175|ref|YP_004384603.1| - 1.2e-58 199.0 0.0 1.5e-58 198.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|330508175|ref|YP_004384603.1| - 0.00013 21.4 0.0 0.0002 20.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|330508175|ref|YP_004384603.1| - 0.00031 19.4 0.0 0.00056 18.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Rsbr_N PF08678.10 gi|330508175|ref|YP_004384603.1| - 0.0015 18.6 0.0 0.0071 16.4 0.0 1.9 2 0 0 2 2 2 1 Rsbr N terminal Aminotran_5 PF00266.19 gi|330508175|ref|YP_004384603.1| - 0.0029 16.6 0.0 0.0047 15.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V 7TM_GPCR_Srz PF10325.9 gi|330508176|ref|YP_004384604.1| - 0.07 12.4 0.1 0.07 12.4 0.1 2.0 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srz PalH PF08733.10 gi|330508176|ref|YP_004384604.1| - 2.3 7.2 7.6 4.7 6.1 7.6 1.7 1 1 0 1 1 1 0 PalH/RIM21 Lactamase_B_2 PF12706.7 gi|330508177|ref|YP_004384605.1| - 1.8e-30 106.0 0.9 2.1e-30 105.7 0.9 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|330508177|ref|YP_004384605.1| - 7.1e-15 55.5 0.4 1e-14 55.1 0.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|330508177|ref|YP_004384605.1| - 0.0033 17.3 0.2 0.0086 16.0 0.2 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.29 gi|330508178|ref|YP_004384606.1| - 1.2e-34 119.5 0.0 2.7e-34 118.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|330508178|ref|YP_004384606.1| - 1.9e-11 43.6 0.0 4.8e-11 42.3 0.0 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_22 PF13401.6 gi|330508178|ref|YP_004384606.1| - 2.3e-05 24.7 0.3 0.021 15.1 0.1 3.7 2 1 1 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|330508178|ref|YP_004384606.1| - 0.00084 19.9 0.0 0.0029 18.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|330508178|ref|YP_004384606.1| - 0.0009 19.3 0.0 0.0038 17.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|330508178|ref|YP_004384606.1| - 0.0047 17.2 0.2 0.019 15.2 0.0 2.1 3 1 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|330508178|ref|YP_004384606.1| - 0.0051 17.2 0.4 0.11 12.9 0.4 2.8 1 1 0 1 1 1 1 AAA ATPase domain DUF815 PF05673.13 gi|330508178|ref|YP_004384606.1| - 0.0051 16.0 0.0 0.053 12.7 0.0 2.3 2 1 1 3 3 3 1 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|330508178|ref|YP_004384606.1| - 0.0092 16.1 0.0 0.099 12.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|330508178|ref|YP_004384606.1| - 0.027 14.6 0.1 0.087 13.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|330508178|ref|YP_004384606.1| - 0.027 13.8 0.0 0.062 12.7 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|330508178|ref|YP_004384606.1| - 0.08 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_11 PF13086.6 gi|330508178|ref|YP_004384606.1| - 0.08 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|330508178|ref|YP_004384606.1| - 0.096 12.8 0.0 0.3 11.2 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase Transposase_20 PF02371.16 gi|330508179|ref|YP_004384607.1| - 2.9e-25 88.4 0.1 5.4e-25 87.5 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330508179|ref|YP_004384607.1| - 3.7e-21 75.6 0.0 6.6e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 Transposase Init_tRNA_PT PF04179.12 gi|330508179|ref|YP_004384607.1| - 0.036 14.4 1.0 0.081 13.2 0.1 2.0 2 0 0 2 2 2 0 Rit1 DUSP-like domain SSF PF00474.17 gi|330508180|ref|YP_004384608.1| - 1.9e-58 198.3 38.9 2.5e-58 197.9 38.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family OrfB_Zn_ribbon PF07282.11 gi|330508181|ref|YP_004384609.1| - 2e-21 75.6 0.1 4.3e-21 74.6 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330508181|ref|YP_004384609.1| - 4.8e-20 72.0 0.0 1e-19 70.9 0.0 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|330508181|ref|YP_004384609.1| - 3.2e-18 64.9 0.7 6.6e-18 63.9 0.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|330508181|ref|YP_004384609.1| - 0.014 15.4 0.3 0.023 14.7 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Pestivirus_E2 PF16329.5 gi|330508181|ref|YP_004384609.1| - 0.016 14.1 0.1 0.026 13.4 0.1 1.2 1 0 0 1 1 1 0 Pestivirus envelope glycoprotein E2 OpuAC PF04069.12 gi|330508181|ref|YP_004384609.1| - 0.039 13.5 0.0 0.068 12.7 0.0 1.4 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system FeoB_Cyto PF17910.1 gi|330508181|ref|YP_004384609.1| - 0.14 12.7 0.8 0.82 10.3 0.2 2.4 2 1 0 2 2 2 0 FeoB cytosolic helical domain RecR PF02132.15 gi|330508181|ref|YP_004384609.1| - 0.51 10.0 3.5 11 5.7 0.3 3.0 2 1 1 3 3 3 0 RecR protein Nitroreductase PF00881.24 gi|330508182|ref|YP_004384610.1| - 4.4e-06 26.9 0.1 0.14 12.2 0.0 3.3 2 1 1 3 3 3 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|330508182|ref|YP_004384610.1| - 1.3e-05 24.8 0.0 3.7e-05 23.4 0.0 1.7 2 0 0 2 2 2 1 Putative TM nitroreductase LUD_dom PF02589.15 gi|330508183|ref|YP_004384611.1| - 2.3e-34 118.8 0.0 2.8e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 LUD domain DUF308 PF03729.13 gi|330508184|ref|YP_004384612.1| - 8.9e-15 54.8 49.5 4.4e-09 36.5 16.4 3.2 2 1 1 3 3 3 3 Short repeat of unknown function (DUF308) MMR_HSR1_C PF08438.10 gi|330508185|ref|YP_004384613.1| - 2.5e-33 115.0 0.0 4e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|330508185|ref|YP_004384613.1| - 9.3e-19 67.6 0.0 9.8e-18 64.3 0.0 2.4 2 1 1 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|330508185|ref|YP_004384613.1| - 7.2e-13 48.4 0.0 2.3e-12 46.8 0.0 1.9 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.18 gi|330508185|ref|YP_004384613.1| - 3.3e-08 33.2 0.1 1.2e-06 28.2 0.0 2.5 2 1 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|330508185|ref|YP_004384613.1| - 0.06 12.9 0.1 2.4 7.7 0.0 2.8 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.13 gi|330508185|ref|YP_004384613.1| - 0.11 12.7 0.1 2.9 8.2 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF933) DUF2786 PF10979.8 gi|330508185|ref|YP_004384613.1| - 0.24 11.4 2.1 2 8.4 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) FrhB_FdhB_C PF04432.13 gi|330508186|ref|YP_004384614.1| - 6.3e-40 136.5 0.0 8.5e-40 136.1 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|330508186|ref|YP_004384614.1| - 7.2e-20 70.9 0.2 1.3e-19 70.1 0.2 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Hydantoinase_A PF01968.18 gi|330508187|ref|YP_004384615.1| - 3.2e-21 75.9 0.1 8e-21 74.6 0.1 1.7 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|330508187|ref|YP_004384615.1| - 0.0004 19.1 0.0 0.018 13.7 0.0 2.2 2 0 0 2 2 2 2 MutL protein Oxidored_nitro PF00148.19 gi|330508187|ref|YP_004384615.1| - 0.045 12.5 0.2 1 8.0 0.1 2.2 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase DDE_5 PF13546.6 gi|330508188|ref|YP_004384616.1| - 4.1e-15 55.8 0.0 6.9e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_2 PF04693.12 gi|330508188|ref|YP_004384616.1| - 1.5e-12 47.4 6.5 4.9e-11 42.4 6.4 2.3 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1 PF01609.21 gi|330508188|ref|YP_004384616.1| - 9.9e-08 31.9 0.9 1.4e-07 31.4 0.9 1.2 1 0 0 1 1 1 1 Transposase DDE domain SeqA PF03925.13 gi|330508188|ref|YP_004384616.1| - 0.034 14.1 0.1 0.084 12.8 0.1 1.6 1 0 0 1 1 1 0 SeqA protein C-terminal domain Colicin_M PF14859.6 gi|330508188|ref|YP_004384616.1| - 0.12 11.4 0.3 0.2 10.7 0.3 1.3 1 0 0 1 1 1 0 Colicin M Flavodoxin_1 PF00258.25 gi|330508189|ref|YP_004384617.1| - 5.7e-11 42.8 0.0 7.3e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|330508189|ref|YP_004384617.1| - 3.6e-10 40.3 0.0 4e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|330508189|ref|YP_004384617.1| - 9.5e-05 22.1 0.0 0.00014 21.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.15 gi|330508189|ref|YP_004384617.1| - 0.00045 20.0 0.3 0.051 13.3 0.3 2.1 1 1 0 1 1 1 1 NADPH-dependent FMN reductase PBP_like_2 PF12849.7 gi|330508190|ref|YP_004384618.1| - 2e-38 132.7 3.3 8.1e-38 130.7 3.3 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|330508190|ref|YP_004384618.1| - 3.1e-21 75.4 0.1 4.2e-21 75.0 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|330508190|ref|YP_004384618.1| - 0.00013 21.8 0.1 0.27 11.0 0.1 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|330508190|ref|YP_004384618.1| - 0.00086 19.3 0.6 0.0025 17.8 0.6 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DEAD PF00270.29 gi|330508192|ref|YP_004384620.1| - 1.6e-35 122.5 0.0 3.4e-34 118.1 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|330508192|ref|YP_004384620.1| - 3.4e-35 121.6 0.0 6.8e-35 120.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|330508192|ref|YP_004384620.1| - 7.4e-24 84.2 0.0 2.1e-21 76.3 0.0 3.2 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|330508192|ref|YP_004384620.1| - 2.5e-06 27.6 0.0 1.1e-05 25.5 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|330508192|ref|YP_004384620.1| - 0.00035 19.4 0.0 0.00074 18.3 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_19 PF13245.6 gi|330508192|ref|YP_004384620.1| - 0.00057 20.2 0.1 0.52 10.7 0.2 3.1 2 2 0 2 2 2 1 AAA domain YdjO PF14169.6 gi|330508192|ref|YP_004384620.1| - 0.032 14.0 2.7 0.085 12.6 2.7 1.7 1 0 0 1 1 1 0 Cold-inducible protein YdjO Crp PF00325.20 gi|330508192|ref|YP_004384620.1| - 0.048 13.3 0.7 1.5 8.6 0.0 3.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family AAA_25 PF13481.6 gi|330508192|ref|YP_004384620.1| - 0.071 12.7 0.1 0.8 9.2 0.0 2.6 3 0 0 3 3 3 0 AAA domain DDE_Tnp_ISL3 PF01610.17 gi|330508193|ref|YP_004384621.1| - 5e-76 255.6 1.2 9.9e-76 254.6 0.6 1.7 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 gi|330508193|ref|YP_004384621.1| - 3.3e-14 52.0 0.1 6.3e-14 51.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 gi|330508193|ref|YP_004384621.1| - 1.9e-10 41.2 6.3 5e-10 39.9 6.3 1.7 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Acylphosphatase PF00708.18 gi|330508194|ref|YP_004384622.1| - 1.2e-18 67.3 0.0 2.3e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.12 gi|330508194|ref|YP_004384622.1| - 0.0044 17.1 0.1 0.0062 16.6 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1115) Mis12 PF05859.12 gi|330508194|ref|YP_004384622.1| - 0.053 13.6 0.2 0.089 12.9 0.2 1.3 1 0 0 1 1 1 0 Mis12 protein DUF3552 PF12072.8 gi|330508194|ref|YP_004384622.1| - 0.38 10.1 3.2 0.62 9.4 3.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) AMP-binding_C_2 PF14535.6 gi|330508196|ref|YP_004384624.1| - 2.1e-27 95.2 0.4 6.3e-27 93.7 0.4 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|330508196|ref|YP_004384624.1| - 7.7e-17 61.0 0.0 5.5e-16 58.2 0.0 1.9 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|330508196|ref|YP_004384624.1| - 0.01 14.9 0.0 0.019 14.0 0.0 1.4 1 0 0 1 1 1 0 Acyl-protein synthetase, LuxE HTH_45 PF14947.6 gi|330508197|ref|YP_004384625.1| - 5.5e-23 80.7 0.2 6.3e-23 80.6 0.2 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.17 gi|330508197|ref|YP_004384625.1| - 0.011 15.5 0.0 0.014 15.2 0.0 1.3 1 1 0 1 1 1 0 HxlR-like helix-turn-helix DHO_dh PF01180.21 gi|330508198|ref|YP_004384626.1| - 2.3e-62 210.9 0.0 2.6e-62 210.7 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|330508198|ref|YP_004384626.1| - 3.2e-12 46.2 0.0 2.1e-06 27.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|330508198|ref|YP_004384626.1| - 1.2e-05 24.9 4.4 2.7e-05 23.7 4.4 1.7 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|330508198|ref|YP_004384626.1| - 0.00013 21.5 0.1 0.00026 20.5 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|330508198|ref|YP_004384626.1| - 0.00045 19.3 0.5 0.0012 18.0 0.6 1.6 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.12 gi|330508198|ref|YP_004384626.1| - 0.008 15.4 0.2 0.022 14.0 0.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF561) IGPS PF00218.21 gi|330508198|ref|YP_004384626.1| - 0.026 13.7 0.0 0.047 12.9 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PcrB PF01884.17 gi|330508198|ref|YP_004384626.1| - 0.089 12.2 0.3 0.21 11.0 0.1 1.6 2 0 0 2 2 2 0 PcrB family FMN_dh PF01070.18 gi|330508198|ref|YP_004384626.1| - 0.1 11.6 0.5 0.33 9.9 0.3 1.8 2 0 0 2 2 2 0 FMN-dependent dehydrogenase G3P_antiterm PF04309.12 gi|330508198|ref|YP_004384626.1| - 0.15 11.5 0.3 0.48 9.8 0.1 1.9 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|330508198|ref|YP_004384626.1| - 0.2 10.5 0.4 15 4.4 0.0 2.3 2 0 0 2 2 2 0 Tryptophan synthase alpha chain DHODB_Fe-S_bind PF10418.9 gi|330508199|ref|YP_004384627.1| - 3.3e-09 36.4 2.4 7e-09 35.3 2.4 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|330508199|ref|YP_004384627.1| - 3.2e-05 24.5 0.0 6.8e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_3 PF13085.6 gi|330508199|ref|YP_004384627.1| - 0.13 12.3 1.0 0.28 11.2 1.0 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FAA_hydrolase PF01557.18 gi|330508200|ref|YP_004384628.1| - 1.5e-69 234.0 0.0 1.7e-69 233.8 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Erythro_esteras PF05139.14 gi|330508201|ref|YP_004384629.1| - 6.5e-52 177.4 0.0 7.5e-52 177.3 0.0 1.1 1 0 0 1 1 1 1 Erythromycin esterase Cofac_haem_bdg PF04187.13 gi|330508201|ref|YP_004384629.1| - 0.074 13.0 0.2 0.18 11.7 0.2 1.8 1 1 0 1 1 1 0 Haem-binding uptake, Tiki superfamily, ChaN Alk_phosphatase PF00245.20 gi|330508202|ref|YP_004384630.1| - 8.4e-103 344.5 2.6 5.2e-95 318.8 1.3 2.1 1 1 0 2 2 2 2 Alkaline phosphatase Metalloenzyme PF01676.18 gi|330508202|ref|YP_004384630.1| - 5.4e-10 39.1 0.0 1.2e-09 37.9 0.0 1.5 2 0 0 2 2 2 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|330508202|ref|YP_004384630.1| - 1.5e-05 24.6 0.1 0.00078 18.9 0.1 2.6 1 1 0 1 1 1 1 Sulfatase HTH_41 PF14502.6 gi|330508202|ref|YP_004384630.1| - 0.013 15.1 0.1 0.051 13.3 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain TPR_1 PF00515.28 gi|330508203|ref|YP_004384631.1| - 2.2e-62 204.5 23.7 1.3e-10 40.6 0.3 7.9 7 1 1 8 8 8 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330508203|ref|YP_004384631.1| - 3.7e-52 170.3 17.9 2.9e-08 33.2 0.2 7.8 7 1 1 8 8 8 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330508203|ref|YP_004384631.1| - 8.5e-51 169.4 35.9 8.9e-11 41.3 0.2 8.3 4 2 4 8 8 8 8 TPR repeat TPR_8 PF13181.6 gi|330508203|ref|YP_004384631.1| - 2.1e-41 136.6 14.4 3.5e-05 23.7 0.0 8.1 7 1 0 7 7 7 7 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330508203|ref|YP_004384631.1| - 7.7e-30 101.1 18.8 5.3e-05 23.3 0.0 9.0 9 0 0 9 9 8 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330508203|ref|YP_004384631.1| - 7e-29 100.2 8.8 8.1e-09 36.0 0.1 5.6 3 1 2 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330508203|ref|YP_004384631.1| - 7.8e-26 90.2 9.0 4e-07 30.2 0.0 5.9 2 1 4 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330508203|ref|YP_004384631.1| - 1.7e-25 87.5 9.7 0.0023 18.6 0.1 8.1 4 2 4 8 8 7 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330508203|ref|YP_004384631.1| - 8.6e-23 80.6 16.4 7.8e-08 32.7 0.1 5.7 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330508203|ref|YP_004384631.1| - 4.4e-18 65.2 0.8 0.00019 21.5 0.0 5.8 2 2 4 6 6 6 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330508203|ref|YP_004384631.1| - 1e-16 59.6 3.6 0.11 12.6 0.0 7.3 7 1 1 8 8 7 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330508203|ref|YP_004384631.1| - 1.1e-14 54.0 8.2 0.43 11.3 0.1 7.9 7 1 0 7 7 7 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330508203|ref|YP_004384631.1| - 2.7e-11 43.6 9.2 0.001 19.3 1.7 4.4 2 2 1 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|330508203|ref|YP_004384631.1| - 1e-10 41.1 16.5 0.0019 18.0 0.1 7.2 7 0 0 7 7 7 2 Tetratricopeptide repeat MIT PF04212.18 gi|330508203|ref|YP_004384631.1| - 1.5e-10 41.0 16.6 0.038 14.1 0.0 7.0 7 0 0 7 7 6 3 MIT (microtubule interacting and transport) domain NARP1 PF12569.8 gi|330508203|ref|YP_004384631.1| - 8.7e-10 38.1 8.8 0.0067 15.4 0.1 5.3 1 1 4 6 6 6 4 NMDA receptor-regulated protein 1 TPR_21 PF09976.9 gi|330508203|ref|YP_004384631.1| - 4e-07 30.0 16.2 0.027 14.2 1.0 5.4 2 1 3 5 5 5 2 Tetratricopeptide repeat-like domain Fis1_TPR_C PF14853.6 gi|330508203|ref|YP_004384631.1| - 1.3e-06 28.3 4.6 0.12 12.5 0.1 6.4 8 0 0 8 8 7 1 Fis1 C-terminal tetratricopeptide repeat DUF3856 PF12968.7 gi|330508203|ref|YP_004384631.1| - 6.6e-06 26.2 5.5 1.2 9.2 0.4 5.6 2 2 2 5 5 5 1 Domain of Unknown Function (DUF3856) TPR_3 PF07720.12 gi|330508203|ref|YP_004384631.1| - 6.9e-06 25.9 16.3 0.12 12.4 0.0 7.1 7 0 0 7 7 7 2 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|330508203|ref|YP_004384631.1| - 0.0006 19.2 1.2 54 3.4 0.0 6.0 6 0 0 6 6 6 0 SHNi-TPR TPR_15 PF13429.6 gi|330508203|ref|YP_004384631.1| - 0.00074 18.8 3.1 3.2 6.9 0.2 4.3 2 1 3 5 5 5 2 Tetratricopeptide repeat DZR PF12773.7 gi|330508203|ref|YP_004384631.1| - 0.0012 18.8 8.0 0.0046 17.0 1.1 2.8 2 1 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|330508203|ref|YP_004384631.1| - 0.0015 18.2 5.8 0.0015 18.2 5.8 2.9 3 0 0 3 3 2 1 zinc-ribbon domain TPR_MalT PF17874.1 gi|330508203|ref|YP_004384631.1| - 0.0026 17.2 0.2 3.5 6.9 0.0 3.0 1 1 1 3 3 3 1 MalT-like TPR region BTAD PF03704.17 gi|330508203|ref|YP_004384631.1| - 0.004 17.6 0.0 5.7 7.4 0.0 2.9 2 1 0 2 2 2 0 Bacterial transcriptional activator domain TPR_4 PF07721.14 gi|330508203|ref|YP_004384631.1| - 0.0075 16.8 0.8 81 4.3 0.0 4.6 5 0 0 5 5 4 0 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|330508203|ref|YP_004384631.1| - 0.024 14.6 1.9 1.1 9.3 0.5 3.2 2 1 0 2 2 2 0 Putative TPR-like repeat Nudix_N_2 PF14803.6 gi|330508203|ref|YP_004384631.1| - 0.036 14.0 6.4 0.071 13.0 0.1 3.0 3 0 0 3 3 3 0 Nudix N-terminal PPTA PF01239.22 gi|330508203|ref|YP_004384631.1| - 0.064 13.0 2.2 0.58 10.0 0.1 3.6 3 0 0 3 3 3 0 Protein prenyltransferase alpha subunit repeat Vps36_ESCRT-II PF11605.8 gi|330508203|ref|YP_004384631.1| - 0.087 13.0 0.1 4.4 7.6 0.0 2.6 2 0 0 2 2 2 0 Vacuolar protein sorting protein 36 Vps36 zf-NADH-PPase PF09297.11 gi|330508203|ref|YP_004384631.1| - 0.15 11.7 0.1 0.15 11.7 0.1 2.6 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain PolC_DP2 PF03833.13 gi|330508203|ref|YP_004384631.1| - 0.22 9.3 3.1 0.097 10.5 0.1 1.7 2 0 0 2 2 2 0 DNA polymerase II large subunit DP2 HTH_Bact PF18768.1 gi|330508203|ref|YP_004384631.1| - 0.37 10.4 18.4 2.6 7.7 0.0 6.6 8 0 0 8 8 6 0 Helix-turn-helix bacterial domain IBR PF01485.21 gi|330508203|ref|YP_004384631.1| - 0.38 11.0 4.1 2.5 8.4 0.3 2.7 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain HypA PF01155.19 gi|330508203|ref|YP_004384631.1| - 0.68 10.0 5.2 0.24 11.4 0.2 2.5 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ANAPC5 PF12862.7 gi|330508203|ref|YP_004384631.1| - 1.2 9.2 7.0 25 5.0 0.1 4.9 3 2 1 5 5 5 0 Anaphase-promoting complex subunit 5 DUF1510 PF07423.11 gi|330508203|ref|YP_004384631.1| - 2.4 8.3 5.0 8.9 6.5 0.2 4.1 3 2 4 7 7 4 0 Domain of unknown function (DUF1510) TPR_20 PF14561.6 gi|330508203|ref|YP_004384631.1| - 3 8.2 12.1 13 6.2 0.2 4.4 4 1 1 5 5 4 0 Tetratricopeptide repeat DnaJ_CXXCXGXG PF00684.19 gi|330508203|ref|YP_004384631.1| - 4.1 7.8 7.1 5 7.6 0.1 2.9 3 0 0 3 3 2 0 DnaJ central domain zinc_ribbon_15 PF17032.5 gi|330508203|ref|YP_004384631.1| - 6.3 7.6 9.5 3.7 8.4 0.5 3.6 3 1 0 3 3 3 0 zinc-ribbon family zf-TFIIB PF13453.6 gi|330508203|ref|YP_004384631.1| - 7.1 6.1 6.1 17 4.8 0.0 3.2 3 0 0 3 3 3 0 Transcription factor zinc-finger zinc-ribbons_6 PF07191.12 gi|330508203|ref|YP_004384631.1| - 9.1 6.4 8.9 0.66 10.0 0.4 2.8 3 1 0 3 3 2 0 zinc-ribbons RseC_MucC PF04246.12 gi|330508204|ref|YP_004384632.1| - 0.36 10.8 3.8 0.41 10.6 3.8 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF4190 PF13828.6 gi|330508204|ref|YP_004384632.1| - 1.5 8.6 8.2 0.35 10.6 1.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4190) HTH_Tnp_1 PF01527.20 gi|330508205|ref|YP_004384633.1| - 0.0025 18.1 0.0 0.0045 17.3 0.0 1.6 1 1 0 1 1 1 1 Transposase BBP1_C PF15272.6 gi|330508205|ref|YP_004384633.1| - 0.038 13.8 0.1 0.045 13.6 0.1 1.1 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal DUF123 PF01986.16 gi|330508208|ref|YP_004384636.1| - 3.3e-27 94.8 0.0 4.2e-27 94.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF11 PF01345.18 gi|330508209|ref|YP_004384637.1| - 2.2e-10 40.7 0.0 4.5 7.6 0.0 6.7 5 2 0 6 6 6 4 Domain of unknown function DUF11 CARDB PF07705.11 gi|330508209|ref|YP_004384637.1| - 2.7e-09 37.2 2.7 0.67 10.3 0.0 6.4 7 0 0 7 7 7 4 CARDB AGS_C PF18134.1 gi|330508209|ref|YP_004384637.1| - 0.021 14.8 0.0 0.42 10.6 0.0 2.8 2 0 0 2 2 2 0 Adenylyl/Guanylyl and SMODS C-terminal sensor domain NPCBM_assoc PF10633.9 gi|330508209|ref|YP_004384637.1| - 0.14 12.4 2.5 57 4.1 0.0 5.4 7 0 0 7 7 7 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Syntaxin-18_N PF10496.9 gi|330508210|ref|YP_004384638.1| - 0.069 13.4 0.9 0.1 12.9 0.9 1.4 1 1 0 1 1 1 0 SNARE-complex protein Syntaxin-18 N-terminus DivIVA PF05103.13 gi|330508210|ref|YP_004384638.1| - 0.078 13.1 8.1 0.098 12.7 8.1 1.2 1 0 0 1 1 1 0 DivIVA protein FIN1 PF17300.2 gi|330508210|ref|YP_004384638.1| - 0.39 10.2 5.1 0.43 10.0 5.1 1.1 1 0 0 1 1 1 0 Filaments in between nuclei protein-1 UPF0242 PF06785.11 gi|330508210|ref|YP_004384638.1| - 0.4 10.8 9.5 0.48 10.5 9.5 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus SNO PF01174.19 gi|330508211|ref|YP_004384639.1| - 3.1e-53 180.4 0.0 3.5e-53 180.3 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|330508211|ref|YP_004384639.1| - 2.2e-09 37.2 0.0 3e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|330508211|ref|YP_004384639.1| - 0.00033 20.4 0.0 0.00043 20.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 BPL_N PF09825.9 gi|330508211|ref|YP_004384639.1| - 0.095 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal SOR_SNZ PF01680.17 gi|330508212|ref|YP_004384640.1| - 3.9e-101 337.1 8.3 6e-101 336.5 8.3 1.3 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|330508212|ref|YP_004384640.1| - 3.7e-11 42.8 6.6 1.4e-07 31.1 0.8 2.5 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|330508212|ref|YP_004384640.1| - 2.6e-05 23.5 0.4 0.015 14.4 0.0 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|330508212|ref|YP_004384640.1| - 4.2e-05 22.8 2.2 0.0046 16.2 0.0 2.8 2 1 1 3 3 3 2 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|330508212|ref|YP_004384640.1| - 0.0019 17.4 0.1 0.012 14.7 0.0 2.0 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase TetR_C_27 PF17935.1 gi|330508212|ref|YP_004384640.1| - 0.0027 17.7 0.0 0.0063 16.6 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain NMO PF03060.15 gi|330508212|ref|YP_004384640.1| - 0.0046 16.4 0.6 0.0046 16.4 0.6 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|330508212|ref|YP_004384640.1| - 0.0051 16.3 0.4 0.016 14.6 0.1 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.12 gi|330508212|ref|YP_004384640.1| - 0.046 12.9 0.1 0.32 10.1 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF561) TMP-TENI PF02581.17 gi|330508212|ref|YP_004384640.1| - 0.064 12.6 1.7 0.44 9.9 0.1 2.3 2 0 0 2 2 2 0 Thiamine monophosphate synthase DUF5050 PF16472.5 gi|330508213|ref|YP_004384641.1| - 1.8e-13 50.4 15.4 0.0014 18.0 0.1 6.6 4 2 2 6 6 6 5 Domain of unknown function (DUF5050) PD40 PF07676.12 gi|330508213|ref|YP_004384641.1| - 2.3e-11 43.3 62.8 0.068 13.1 0.7 18.7 18 1 0 18 18 18 5 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|330508213|ref|YP_004384641.1| - 1.9e-09 36.8 12.4 0.14 10.9 0.1 8.5 4 2 4 8 8 8 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.6 gi|330508213|ref|YP_004384641.1| - 3e-05 22.9 7.3 1.2 7.7 0.0 7.0 5 3 1 7 7 7 2 Oligogalacturonate lyase Kelch_4 PF13418.6 gi|330508213|ref|YP_004384641.1| - 0.37 10.8 2.8 2.8e+02 1.6 0.1 6.0 6 0 0 6 6 6 0 Galactose oxidase, central domain DUF2606 PF10794.9 gi|330508213|ref|YP_004384641.1| - 0.62 9.8 25.6 5.5 6.8 0.1 10.1 7 4 5 12 12 12 0 Protein of unknown function (DUF2606) TraW_N PF12477.8 gi|330508213|ref|YP_004384641.1| - 3.3 7.8 5.9 0.48 10.4 2.0 1.7 2 0 0 2 2 2 0 Sex factor F TraW protein N terminal Pentapeptide_3 PF13576.6 gi|330508214|ref|YP_004384642.1| - 2.7e-12 46.6 9.8 2.5e-06 27.5 7.3 3.4 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) DUF4855 PF16147.5 gi|330508214|ref|YP_004384642.1| - 0.064 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4855) DUF4131 PF13567.6 gi|330508214|ref|YP_004384642.1| - 0.13 11.9 0.2 0.13 11.9 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Ion_trans_2 PF07885.16 gi|330508214|ref|YP_004384642.1| - 0.95 9.5 12.2 1.3 9.0 8.0 3.0 2 1 1 3 3 3 0 Ion channel PGK PF00162.19 gi|330508215|ref|YP_004384643.1| - 1.5e-111 373.0 0.2 1.7e-111 372.8 0.2 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DHH PF01368.20 gi|330508216|ref|YP_004384644.1| - 1.7e-12 47.5 0.0 2.6e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|330508216|ref|YP_004384644.1| - 4.2e-09 36.9 3.2 1.3e-08 35.4 3.4 1.8 2 1 0 2 2 2 1 DHHA1 domain Pribosyltran PF00156.27 gi|330508217|ref|YP_004384645.1| - 1.3e-19 70.3 0.0 1.8e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|330508217|ref|YP_004384645.1| - 0.00036 20.0 0.0 0.0005 19.6 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|330508217|ref|YP_004384645.1| - 0.0029 17.1 0.0 0.0048 16.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase CHAT PF12770.7 gi|330508218|ref|YP_004384646.1| - 1.1e-05 25.0 0.0 2.4e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 CHAT domain Peptidase_C25 PF01364.18 gi|330508218|ref|YP_004384646.1| - 0.00091 18.5 0.0 0.0015 17.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family C25 DUF3180 PF11377.8 gi|330508219|ref|YP_004384647.1| - 0.05 13.8 0.9 0.05 13.8 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3180) DUF2304 PF10066.9 gi|330508219|ref|YP_004384647.1| - 0.21 11.8 2.1 0.39 11.0 2.2 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) FUN14 PF04930.15 gi|330508220|ref|YP_004384648.1| - 0.67 10.4 2.7 3.2 8.2 1.7 2.0 1 1 1 2 2 2 0 FUN14 family FAP206 PF12018.8 gi|330508222|ref|YP_004384650.1| - 0.04 13.4 0.0 0.076 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function ATPase_gene1 PF09527.10 gi|330508222|ref|YP_004384650.1| - 0.08 13.1 5.1 0.16 12.2 5.1 1.4 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter DUF2207 PF09972.9 gi|330508222|ref|YP_004384650.1| - 0.12 11.2 0.1 0.13 11.0 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3784 PF12650.7 gi|330508222|ref|YP_004384650.1| - 0.47 10.7 4.4 0.95 9.7 4.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) OppC_N PF12911.7 gi|330508222|ref|YP_004384650.1| - 2.6 8.1 5.0 5.2 7.1 0.4 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Band_7 PF01145.25 gi|330508223|ref|YP_004384651.1| - 3e-27 95.8 1.4 4e-27 95.4 1.4 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|330508223|ref|YP_004384651.1| - 0.041 13.6 0.1 0.067 12.9 0.1 1.3 1 0 0 1 1 1 0 SPFH domain-Band 7 family IFT20 PF14931.6 gi|330508223|ref|YP_004384651.1| - 0.076 13.2 7.8 0.04 14.1 5.8 1.5 2 0 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 AMMECR1 PF01871.17 gi|330508223|ref|YP_004384651.1| - 0.11 12.1 0.1 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 AMMECR1 Y1_Tnp PF01797.16 gi|330508224|ref|YP_004384652.1| - 9.4e-29 100.0 0.0 1.1e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 Transposase IS200 like DUF772 PF05598.11 gi|330508225|ref|YP_004384653.1| - 3.4e-23 81.4 0.0 6.3e-23 80.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|330508225|ref|YP_004384653.1| - 3e-17 63.0 0.7 6.5e-17 61.9 0.7 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|330508225|ref|YP_004384653.1| - 4.6e-06 26.4 0.3 1.6e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.6 gi|330508225|ref|YP_004384653.1| - 1.9e-05 24.7 0.1 4.9e-05 23.4 0.1 1.6 1 1 0 1 1 1 1 Transposase DDE domain DUF3502 PF12010.8 gi|330508225|ref|YP_004384653.1| - 0.055 14.1 0.0 0.23 12.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3502) DUF5315 PF17242.2 gi|330508225|ref|YP_004384653.1| - 0.1 12.4 0.1 0.29 11.0 0.1 1.8 1 0 0 1 1 1 0 Disordered region of unknown function (DUF5315) F_actin_bind PF08919.10 gi|330508227|ref|YP_004384655.1| - 0.0016 18.5 5.6 0.096 12.8 0.2 2.3 2 0 0 2 2 2 2 F-actin binding YkuI_C PF10388.9 gi|330508227|ref|YP_004384655.1| - 0.011 15.6 1.0 0.011 15.6 1.0 2.1 1 1 0 2 2 2 0 EAL-domain associated signalling protein domain DivIVA PF05103.13 gi|330508227|ref|YP_004384655.1| - 0.022 14.9 3.4 0.022 14.9 3.4 3.2 1 1 2 3 3 3 0 DivIVA protein CorA PF01544.18 gi|330508227|ref|YP_004384655.1| - 0.028 13.7 10.3 0.016 14.6 6.1 1.9 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein T3SSipB PF16535.5 gi|330508227|ref|YP_004384655.1| - 0.032 14.7 20.3 0.082 13.4 11.9 2.5 1 1 1 2 2 2 0 Type III cell invasion protein SipB HalX PF08663.10 gi|330508227|ref|YP_004384655.1| - 0.049 13.9 1.2 0.049 13.9 1.2 3.5 4 1 0 4 4 4 0 HalX domain DUF1664 PF07889.12 gi|330508227|ref|YP_004384655.1| - 0.064 13.3 9.2 0.062 13.3 1.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) UPF0242 PF06785.11 gi|330508227|ref|YP_004384655.1| - 0.13 12.4 24.5 0.056 13.6 6.2 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Laminin_II PF06009.12 gi|330508227|ref|YP_004384655.1| - 0.19 11.8 10.8 0.035 14.1 2.1 2.3 2 0 0 2 2 2 0 Laminin Domain II NPV_P10 PF05531.12 gi|330508227|ref|YP_004384655.1| - 0.21 12.1 3.6 3.2 8.3 0.2 2.8 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Syntaxin_2 PF14523.6 gi|330508227|ref|YP_004384655.1| - 0.23 11.8 12.2 17 5.8 12.2 2.7 1 1 0 1 1 1 0 Syntaxin-like protein Seryl_tRNA_N PF02403.22 gi|330508227|ref|YP_004384655.1| - 0.25 11.6 21.1 0.15 12.3 2.7 3.3 1 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain FUSC PF04632.12 gi|330508227|ref|YP_004384655.1| - 0.33 9.4 9.4 1.4 7.4 9.4 1.8 1 1 0 1 1 1 0 Fusaric acid resistance protein family DUF948 PF06103.11 gi|330508227|ref|YP_004384655.1| - 0.4 11.0 4.0 5.2 7.4 0.2 2.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4200 PF13863.6 gi|330508227|ref|YP_004384655.1| - 0.42 11.0 26.7 0.6 10.5 7.4 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4200) DUF848 PF05852.11 gi|330508227|ref|YP_004384655.1| - 0.49 10.5 13.7 0.36 10.9 2.8 2.2 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) TMPIT PF07851.13 gi|330508227|ref|YP_004384655.1| - 0.51 9.5 15.0 0.87 8.8 5.3 2.1 1 1 0 2 2 2 0 TMPIT-like protein Occludin_ELL PF07303.13 gi|330508227|ref|YP_004384655.1| - 0.53 11.0 13.7 0.27 12.0 3.1 2.7 1 1 0 2 2 2 0 Occludin homology domain YtxH PF12732.7 gi|330508227|ref|YP_004384655.1| - 0.57 10.8 6.3 2.5e+02 2.3 6.3 3.0 1 1 0 1 1 1 0 YtxH-like protein OrfB_IS605 PF01385.19 gi|330508227|ref|YP_004384655.1| - 0.61 10.3 8.8 0.7 10.1 2.3 2.6 2 1 0 2 2 2 0 Probable transposase DUF2935 PF11155.8 gi|330508227|ref|YP_004384655.1| - 0.84 10.0 9.2 1.3 9.4 2.4 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) CCDC-167 PF15188.6 gi|330508227|ref|YP_004384655.1| - 1.4 9.3 13.6 1.7 9.0 4.5 3.4 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 DUF148 PF02520.17 gi|330508227|ref|YP_004384655.1| - 1.7 8.8 13.9 0.65 10.1 1.0 2.9 1 1 0 2 2 2 0 Domain of unknown function DUF148 Prefoldin PF02996.17 gi|330508227|ref|YP_004384655.1| - 2 8.4 11.6 6.1 6.8 1.5 3.2 2 2 2 4 4 4 0 Prefoldin subunit Atg14 PF10186.9 gi|330508227|ref|YP_004384655.1| - 2.5 7.1 19.9 1.3 8.1 8.5 2.0 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Synaptobrevin PF00957.21 gi|330508227|ref|YP_004384655.1| - 3.6 7.4 9.0 9.5 6.1 0.8 3.2 2 2 1 3 3 3 0 Synaptobrevin DUF3450 PF11932.8 gi|330508227|ref|YP_004384655.1| - 5.8 6.1 21.4 1.1 8.5 9.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF3280 PF11684.8 gi|330508227|ref|YP_004384655.1| - 7.9 6.9 10.7 1 9.8 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2380) DUF98 PF01947.16 gi|330508228|ref|YP_004384656.1| - 5.2e-29 101.1 0.0 8.1e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase GHMP_kinases_C PF08544.13 gi|330508228|ref|YP_004384656.1| - 8.8e-07 29.2 0.0 3.4e-06 27.3 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal UTRA PF07702.13 gi|330508228|ref|YP_004384656.1| - 2e-05 24.5 0.0 3.8e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 UTRA domain GHMP_kinases_N PF00288.26 gi|330508228|ref|YP_004384656.1| - 0.019 15.2 0.0 0.043 14.1 0.0 1.7 1 0 0 1 1 1 0 GHMP kinases N terminal domain CitMHS PF03600.16 gi|330508229|ref|YP_004384657.1| - 3.2e-60 203.9 53.6 1e-47 162.8 23.3 1.9 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|330508229|ref|YP_004384657.1| - 1.3e-19 70.6 36.0 3.7e-16 59.2 17.0 2.2 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|330508229|ref|YP_004384657.1| - 2.3e-12 46.6 0.0 1.2e-06 28.3 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain PAS_4 PF08448.10 gi|330508230|ref|YP_004384658.1| - 1.3e-42 144.5 0.0 4.1e-17 62.4 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|330508230|ref|YP_004384658.1| - 1.6e-40 137.6 0.1 1.1e-15 57.8 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|330508230|ref|YP_004384658.1| - 1.6e-39 134.4 0.1 9.6e-18 64.2 0.0 3.7 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|330508230|ref|YP_004384658.1| - 1.1e-36 125.4 0.3 4.8e-26 91.1 0.0 3.1 3 0 0 3 3 3 2 Response regulator receiver domain HATPase_c PF02518.26 gi|330508230|ref|YP_004384658.1| - 1.4e-30 106.1 0.0 3.5e-30 104.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|330508230|ref|YP_004384658.1| - 6.1e-20 71.0 0.2 4.5e-19 68.2 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|330508230|ref|YP_004384658.1| - 4e-18 65.0 0.5 8.4e-06 25.7 0.1 4.0 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.12 gi|330508230|ref|YP_004384658.1| - 1.7e-16 60.3 0.1 5e-13 49.2 0.0 3.5 3 0 0 3 3 3 2 PAS fold PAS_12 PF18095.1 gi|330508230|ref|YP_004384658.1| - 6.6e-09 35.6 0.6 0.0025 17.5 0.0 3.3 3 0 0 3 3 3 2 UPF0242 C-terminal PAS-like domain PAS_7 PF12860.7 gi|330508230|ref|YP_004384658.1| - 1.4e-07 31.7 0.0 0.0041 17.3 0.0 4.0 3 0 0 3 3 3 1 PAS fold PAS_10 PF13596.6 gi|330508230|ref|YP_004384658.1| - 1.7e-05 25.3 0.0 3 8.5 0.0 4.1 4 0 0 4 4 4 2 PAS domain HATPase_c_5 PF14501.6 gi|330508230|ref|YP_004384658.1| - 0.018 14.9 0.0 0.054 13.4 0.0 1.8 1 0 0 1 1 1 0 GHKL domain MLTR_LBD PF17765.1 gi|330508230|ref|YP_004384658.1| - 0.082 13.0 0.0 7.2 6.7 0.0 2.6 2 0 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain DUF1722 PF08349.11 gi|330508231|ref|YP_004384659.1| - 5.2e-39 133.2 0.7 7.3e-39 132.7 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) DUF523 PF04463.12 gi|330508231|ref|YP_004384659.1| - 1e-30 106.6 0.0 2e-30 105.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF3283 PF11686.8 gi|330508231|ref|YP_004384659.1| - 0.026 14.3 0.4 0.052 13.4 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3283) DUF2807 PF10988.8 gi|330508232|ref|YP_004384660.1| - 8.9e-45 152.7 0.3 8.9e-45 152.7 0.3 1.4 2 0 0 2 2 2 1 Putative auto-transporter adhesin, head GIN domain Pyr_redox_2 PF07992.14 gi|330508234|ref|YP_004384662.1| - 8e-16 58.1 0.1 4.9e-07 29.3 0.0 3.2 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|330508234|ref|YP_004384662.1| - 9.4e-14 51.3 0.9 1.1e-06 28.1 0.1 2.5 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.22 gi|330508234|ref|YP_004384662.1| - 4e-13 49.2 0.0 2.9e-05 23.4 0.0 3.0 2 1 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|330508234|ref|YP_004384662.1| - 4.7e-11 42.0 0.0 1.2e-07 30.9 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|330508234|ref|YP_004384662.1| - 2.2e-09 37.4 0.6 9.1e-07 28.8 0.6 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|330508234|ref|YP_004384662.1| - 1.9e-06 27.3 0.0 3.1e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|330508234|ref|YP_004384662.1| - 3.2e-06 27.3 0.0 1.1e-05 25.5 0.1 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|330508234|ref|YP_004384662.1| - 2.9e-05 23.6 0.3 0.00011 21.7 0.2 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|330508234|ref|YP_004384662.1| - 3.8e-05 23.1 0.1 8.3e-05 21.9 0.1 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|330508234|ref|YP_004384662.1| - 0.00011 21.6 0.0 0.00018 20.9 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|330508234|ref|YP_004384662.1| - 0.00012 21.3 0.1 0.00017 20.8 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|330508234|ref|YP_004384662.1| - 0.0003 21.3 0.0 0.18 12.4 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|330508234|ref|YP_004384662.1| - 0.017 15.1 0.0 0.47 10.4 0.0 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding GMC_oxred_N PF00732.19 gi|330508234|ref|YP_004384662.1| - 0.025 14.0 0.0 0.69 9.2 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase AlaDh_PNT_C PF01262.21 gi|330508234|ref|YP_004384662.1| - 0.098 11.9 0.0 0.31 10.3 0.0 1.8 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain MFS_1 PF07690.16 gi|330508235|ref|YP_004384663.1| - 1.3e-42 146.0 72.1 9.4e-36 123.5 43.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330508235|ref|YP_004384663.1| - 0.78 8.5 31.0 0.059 12.2 13.5 2.4 2 1 0 2 2 2 0 Sugar (and other) transporter FmdE PF02663.14 gi|330508236|ref|YP_004384664.1| - 1e-21 77.4 0.0 7.5e-14 51.9 0.0 2.2 2 0 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Flavin_Reduct PF01613.18 gi|330508237|ref|YP_004384665.1| - 2.7e-19 69.8 0.0 3.4e-19 69.4 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.12 gi|330508237|ref|YP_004384665.1| - 0.00014 21.7 0.0 0.00026 20.8 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF447) CbiA PF01656.23 gi|330508238|ref|YP_004384666.1| - 1.9e-12 47.3 0.0 3.4e-12 46.5 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|330508238|ref|YP_004384666.1| - 6.2e-09 35.7 0.5 4.6e-07 29.5 0.1 2.9 2 1 1 3 3 3 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|330508238|ref|YP_004384666.1| - 1.9e-08 34.4 0.0 5.4e-08 33.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|330508238|ref|YP_004384666.1| - 2.3e-07 30.3 0.2 4.5e-07 29.4 0.2 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|330508238|ref|YP_004384666.1| - 3e-06 26.9 3.6 3.1e-05 23.6 0.1 2.4 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 gi|330508238|ref|YP_004384666.1| - 4e-05 23.5 0.0 8e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase CLP1_P PF16575.5 gi|330508238|ref|YP_004384666.1| - 4.5e-05 23.3 0.0 0.001 18.9 0.0 2.2 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MipZ PF09140.11 gi|330508238|ref|YP_004384666.1| - 8.1e-05 22.0 0.1 0.0021 17.4 0.1 2.1 2 0 0 2 2 2 1 ATPase MipZ TrkA_N PF02254.18 gi|330508238|ref|YP_004384666.1| - 0.00014 22.1 0.1 0.051 13.8 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain Zeta_toxin PF06414.12 gi|330508238|ref|YP_004384666.1| - 0.00019 20.8 0.1 0.00064 19.1 0.1 1.8 2 0 0 2 2 2 1 Zeta toxin CBP_BcsQ PF06564.12 gi|330508238|ref|YP_004384666.1| - 0.00025 20.6 0.0 0.011 15.3 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ DUF87 PF01935.17 gi|330508238|ref|YP_004384666.1| - 0.00052 20.2 0.0 0.001 19.2 0.0 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain SRP54 PF00448.22 gi|330508238|ref|YP_004384666.1| - 0.0019 17.9 0.0 0.0059 16.3 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|330508238|ref|YP_004384666.1| - 0.0019 17.9 0.1 0.004 16.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.10 gi|330508238|ref|YP_004384666.1| - 0.0032 17.0 0.0 0.0049 16.3 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_10 PF12846.7 gi|330508238|ref|YP_004384666.1| - 0.0046 15.9 0.0 0.044 12.7 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain ABC_tran PF00005.27 gi|330508238|ref|YP_004384666.1| - 0.007 16.9 0.0 0.0098 16.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ATPase PF06745.13 gi|330508238|ref|YP_004384666.1| - 0.015 14.7 0.1 0.036 13.4 0.1 1.5 1 0 0 1 1 1 0 KaiC MeaB PF03308.16 gi|330508238|ref|YP_004384666.1| - 0.02 13.9 0.3 0.045 12.7 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB TrwB_AAD_bind PF10412.9 gi|330508238|ref|YP_004384666.1| - 0.021 13.8 0.0 0.031 13.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_25 PF13481.6 gi|330508238|ref|YP_004384666.1| - 0.027 14.1 0.2 0.084 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|330508238|ref|YP_004384666.1| - 0.027 14.6 0.0 0.057 13.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF1995 PF09353.10 gi|330508238|ref|YP_004384666.1| - 0.027 14.5 0.0 0.033 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1995) KAP_NTPase PF07693.14 gi|330508238|ref|YP_004384666.1| - 0.036 13.3 0.1 0.091 12.0 0.0 1.6 2 0 0 2 2 2 0 KAP family P-loop domain AAA_26 PF13500.6 gi|330508238|ref|YP_004384666.1| - 0.043 13.6 0.2 3.8 7.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|330508238|ref|YP_004384666.1| - 0.05 14.1 0.0 0.1 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|330508238|ref|YP_004384666.1| - 0.15 12.5 0.0 0.31 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Thymidylate_kin PF02223.17 gi|330508238|ref|YP_004384666.1| - 0.16 11.7 0.0 0.34 10.6 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase SBP_bac_5 PF00496.22 gi|330508239|ref|YP_004384667.1| - 3.6e-74 250.0 0.3 4.4e-74 249.7 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ABC_tran PF00005.27 gi|330508240|ref|YP_004384668.1| - 2.5e-28 99.3 0.0 5.1e-28 98.3 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|330508240|ref|YP_004384668.1| - 5.5e-14 52.7 0.2 5.9e-08 32.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|330508240|ref|YP_004384668.1| - 3.3e-05 23.5 0.0 6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|330508240|ref|YP_004384668.1| - 0.00039 20.2 0.0 0.75 9.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.6 gi|330508240|ref|YP_004384668.1| - 0.00061 18.6 0.0 0.15 10.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|330508240|ref|YP_004384668.1| - 0.002 18.7 0.0 0.0039 17.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|330508240|ref|YP_004384668.1| - 0.0028 17.6 0.0 0.0042 17.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|330508240|ref|YP_004384668.1| - 0.029 14.3 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 gi|330508240|ref|YP_004384668.1| - 0.061 12.7 0.1 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_14 PF13173.6 gi|330508240|ref|YP_004384668.1| - 0.084 12.9 0.0 2.9 7.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|330508240|ref|YP_004384668.1| - 0.088 13.2 0.1 0.45 10.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|330508240|ref|YP_004384668.1| - 0.1 13.0 0.0 0.14 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|330508240|ref|YP_004384668.1| - 0.12 12.8 0.0 0.29 11.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|330508240|ref|YP_004384668.1| - 0.12 12.4 0.0 0.46 10.6 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase ABC2_membrane PF01061.24 gi|330508241|ref|YP_004384669.1| - 3.1e-19 69.2 24.7 3.1e-19 69.2 24.7 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330508241|ref|YP_004384669.1| - 1.7e-11 43.8 27.3 1.7e-11 43.8 27.3 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF3481 PF11980.8 gi|330508241|ref|YP_004384669.1| - 2.3 8.0 5.0 8.7 6.1 0.1 2.5 1 1 0 2 2 2 0 C-terminal domain of neuropilin glycoprotein FpoO PF10621.9 gi|330508242|ref|YP_004384670.1| - 7.8e-13 48.7 0.1 8.2e-13 48.6 0.1 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO tRNA_anti-codon PF01336.25 gi|330508243|ref|YP_004384671.1| - 1.6e-05 24.8 0.0 3.6e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|330508243|ref|YP_004384671.1| - 0.017 15.3 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain SelB-wing_3 PF09107.11 gi|330508243|ref|YP_004384671.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Elongation factor SelB, winged helix DUF4131 PF13567.6 gi|330508243|ref|YP_004384671.1| - 0.14 11.8 0.0 0.35 10.5 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) SAM_adeno_trans PF01887.16 gi|330508244|ref|YP_004384672.1| - 5.4e-76 255.1 0.0 6.5e-76 254.9 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Bac_luciferase PF00296.20 gi|330508245|ref|YP_004384673.1| - 1.6e-60 205.2 0.0 1.9e-60 204.9 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase CTP_transf_like PF01467.26 gi|330508246|ref|YP_004384674.1| - 1.6e-15 57.6 0.0 2.3e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|330508246|ref|YP_004384674.1| - 0.034 13.4 0.0 1.8 7.7 0.0 2.1 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Citrate_ly_lig PF08218.11 gi|330508246|ref|YP_004384674.1| - 0.052 13.2 0.0 0.49 10.1 0.0 2.0 2 0 0 2 2 2 0 Citrate lyase ligase C-terminal domain FAD_syn PF06574.12 gi|330508246|ref|YP_004384674.1| - 0.056 13.3 0.0 0.089 12.7 0.0 1.3 1 0 0 1 1 1 0 FAD synthetase DUF4277 PF14104.6 gi|330508247|ref|YP_004384675.1| - 2.9e-41 140.2 0.0 6e-41 139.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|330508247|ref|YP_004384675.1| - 8.1e-12 45.2 0.2 5.7e-11 42.5 0.2 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF333 PF03891.15 gi|330508249|ref|YP_004384677.1| - 1.3e-08 34.9 0.4 1.5e-06 28.3 0.4 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF333) Transposase_20 PF02371.16 gi|330508250|ref|YP_004384678.1| - 5.9e-25 87.4 0.0 1.3e-24 86.3 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330508250|ref|YP_004384678.1| - 9.3e-23 80.8 0.2 3.7e-22 78.9 0.0 2.0 2 0 0 2 2 2 1 Transposase YfkB PF08756.10 gi|330508250|ref|YP_004384678.1| - 0.0059 16.4 0.1 0.015 15.1 0.1 1.7 1 0 0 1 1 1 1 YfkB-like domain UPF0261 PF06792.11 gi|330508250|ref|YP_004384678.1| - 0.12 11.3 0.1 0.79 8.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0261) Transglut_core PF01841.19 gi|330508251|ref|YP_004384679.1| - 2e-05 25.0 0.0 6.3e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 Transglutaminase-like superfamily TPR_2 PF07719.17 gi|330508252|ref|YP_004384680.1| - 1.2e-22 78.1 10.5 2.4e-07 30.4 0.1 4.8 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330508252|ref|YP_004384680.1| - 9.6e-21 72.7 12.8 3.2e-09 36.2 0.1 4.6 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330508252|ref|YP_004384680.1| - 4.7e-19 67.8 1.4 1.8e-06 27.5 0.1 3.6 2 1 1 3 3 3 3 TPR repeat TPR_8 PF13181.6 gi|330508252|ref|YP_004384680.1| - 8.3e-16 56.8 9.8 6.4e-06 26.0 0.1 4.9 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330508252|ref|YP_004384680.1| - 2.7e-15 55.6 7.7 2.8e-06 27.3 0.1 4.6 5 0 0 5 5 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330508252|ref|YP_004384680.1| - 1.9e-14 54.0 1.4 3e-08 34.2 0.1 3.1 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330508252|ref|YP_004384680.1| - 2.5e-13 50.3 8.3 3.9e-07 30.5 0.8 3.1 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330508252|ref|YP_004384680.1| - 1.8e-12 47.0 3.3 0.0021 18.7 0.0 3.7 2 1 2 4 4 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330508252|ref|YP_004384680.1| - 2.7e-12 46.6 0.3 4e-07 30.1 0.0 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330508252|ref|YP_004384680.1| - 7.7e-10 38.9 8.5 0.00028 21.1 0.2 4.0 3 2 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330508252|ref|YP_004384680.1| - 6.4e-08 32.7 8.6 0.00028 21.0 0.6 2.9 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|330508252|ref|YP_004384680.1| - 8.8e-08 31.7 1.3 0.041 13.9 0.3 3.7 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330508252|ref|YP_004384680.1| - 3.5e-06 26.7 6.6 0.092 12.6 0.1 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|330508252|ref|YP_004384680.1| - 8.9e-05 21.6 1.0 0.15 11.0 0.0 2.8 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|330508252|ref|YP_004384680.1| - 0.00075 19.5 0.4 1.1 9.4 0.0 3.3 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_4 PF07721.14 gi|330508252|ref|YP_004384680.1| - 0.0012 19.2 1.5 1.7 9.5 0.0 3.0 3 0 0 3 3 2 2 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|330508252|ref|YP_004384680.1| - 0.0019 18.2 0.3 0.0046 17.0 0.2 1.8 1 1 0 1 1 1 1 Putative TPR-like repeat ANAPC5 PF12862.7 gi|330508252|ref|YP_004384680.1| - 0.0069 16.4 2.5 0.42 10.7 0.2 2.5 1 1 1 2 2 2 1 Anaphase-promoting complex subunit 5 TPR_6 PF13174.6 gi|330508252|ref|YP_004384680.1| - 0.013 16.1 7.6 2.7 8.8 0.0 4.4 5 0 0 5 5 4 0 Tetratricopeptide repeat FAT PF02259.23 gi|330508252|ref|YP_004384680.1| - 0.016 14.4 1.8 0.12 11.6 0.3 2.1 1 1 1 2 2 2 0 FAT domain DUF3856 PF12968.7 gi|330508252|ref|YP_004384680.1| - 0.02 14.9 1.0 5 7.2 0.0 2.9 2 1 1 3 3 3 0 Domain of Unknown Function (DUF3856) TPR_MalT PF17874.1 gi|330508252|ref|YP_004384680.1| - 0.034 13.5 3.5 3.2 7.0 0.7 2.6 1 1 1 2 2 2 0 MalT-like TPR region NRBF2_MIT PF17169.4 gi|330508252|ref|YP_004384680.1| - 0.048 13.9 1.3 3.3 8.0 0.2 3.2 1 1 2 3 3 3 0 MIT domain of nuclear receptor-binding factor 2 ChAPs PF09295.10 gi|330508252|ref|YP_004384680.1| - 0.071 12.1 1.0 0.44 9.5 0.1 2.0 1 1 1 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) HTH_Bact PF18768.1 gi|330508252|ref|YP_004384680.1| - 0.089 12.4 0.1 21 4.8 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix bacterial domain TPR_3 PF07720.12 gi|330508252|ref|YP_004384680.1| - 0.12 12.4 1.9 19 5.3 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat MIT PF04212.18 gi|330508252|ref|YP_004384680.1| - 0.12 12.5 4.9 7.7 6.7 0.1 3.1 1 1 2 3 3 3 0 MIT (microtubule interacting and transport) domain HEPN PF05168.14 gi|330508252|ref|YP_004384680.1| - 1.7 8.8 5.6 1.4 9.1 0.1 3.0 4 0 0 4 4 3 0 HEPN domain DUF4352 PF11611.8 gi|330508253|ref|YP_004384681.1| - 0.026 14.8 0.0 0.8 10.0 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4352) PRCC PF10253.9 gi|330508254|ref|YP_004384682.1| - 0.055 14.2 3.2 0.061 14.1 3.2 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting Atrophin-1 PF03154.15 gi|330508254|ref|YP_004384682.1| - 1 7.6 13.2 1.2 7.4 13.2 1.0 1 0 0 1 1 1 0 Atrophin-1 family Transglut_core PF01841.19 gi|330508256|ref|YP_004384684.1| - 4e-06 27.3 0.0 1.9e-05 25.0 0.0 2.1 1 1 0 1 1 1 1 Transglutaminase-like superfamily DUF4166 PF13761.6 gi|330508257|ref|YP_004384685.1| - 1.5e-05 24.9 2.9 10 5.9 0.0 6.2 4 1 2 6 6 6 2 Domain of unknown function (DUF4166) Transglut_core PF01841.19 gi|330508257|ref|YP_004384685.1| - 3.6e-05 24.2 0.0 7.1e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.12 gi|330508257|ref|YP_004384685.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Transglutaminase-like domain Colicin_E5 PF12106.8 gi|330508258|ref|YP_004384686.1| - 3.2e-07 30.6 0.1 19 5.7 0.0 6.5 7 0 0 7 7 7 1 Colicin E5 ribonuclease domain Transglut_core PF01841.19 gi|330508258|ref|YP_004384686.1| - 1.3e-06 28.8 0.0 3.1e-05 24.4 0.0 2.3 1 1 1 2 2 2 1 Transglutaminase-like superfamily DERM PF14704.6 gi|330508258|ref|YP_004384686.1| - 0.00054 20.5 0.4 0.3 11.5 0.0 3.8 2 1 2 4 4 4 1 Dermatopontin DUF2064 PF09837.9 gi|330508258|ref|YP_004384686.1| - 1.2 8.9 11.3 63 3.4 0.0 6.0 7 0 0 7 7 7 0 Uncharacterized protein conserved in bacteria (DUF2064) Transglut_core PF01841.19 gi|330508259|ref|YP_004384687.1| - 1.3e-06 28.8 0.0 3.6e-05 24.2 0.0 2.3 1 1 1 2 2 2 1 Transglutaminase-like superfamily Colicin_E5 PF12106.8 gi|330508259|ref|YP_004384687.1| - 4.1e-05 23.8 1.9 75 3.7 0.0 6.5 7 0 0 7 7 7 0 Colicin E5 ribonuclease domain DERM PF14704.6 gi|330508259|ref|YP_004384687.1| - 0.00023 21.7 0.0 0.41 11.1 0.0 3.7 2 1 2 4 4 4 2 Dermatopontin Transglut_core PF01841.19 gi|330508260|ref|YP_004384688.1| - 4.7e-06 27.0 0.0 1.6e-05 25.3 0.0 1.8 1 1 1 2 2 2 1 Transglutaminase-like superfamily DERM PF14704.6 gi|330508260|ref|YP_004384688.1| - 0.0074 16.8 0.3 7.9 6.9 0.0 3.2 1 1 4 5 5 5 3 Dermatopontin AAA_17 PF13207.6 gi|330508261|ref|YP_004384689.1| - 1e-17 64.8 0.2 2e-17 63.9 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|330508261|ref|YP_004384689.1| - 2.2e-10 41.2 0.0 3.3e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|330508261|ref|YP_004384689.1| - 1.6e-06 28.3 0.0 2.4e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|330508261|ref|YP_004384689.1| - 0.004 17.3 0.0 0.0073 16.4 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase SRP54 PF00448.22 gi|330508261|ref|YP_004384689.1| - 0.032 13.8 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Radical_SAM PF04055.21 gi|330508262|ref|YP_004384690.1| - 9.8e-14 52.1 0.1 2.3e-13 50.9 0.1 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330508262|ref|YP_004384690.1| - 1.3e-08 35.2 0.0 3.4e-08 33.8 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330508262|ref|YP_004384690.1| - 0.0023 18.1 0.3 0.029 14.5 0.3 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain VirArc_Nuclease PF12187.8 gi|330508263|ref|YP_004384691.1| - 0.097 12.2 0.2 0.16 11.5 0.2 1.3 1 0 0 1 1 1 0 Viral/Archaeal nuclease Pox_F11 PF04943.12 gi|330508263|ref|YP_004384691.1| - 0.2 10.7 2.4 8 5.4 0.7 2.2 2 0 0 2 2 2 0 Poxvirus F11 protein Tweety PF04906.13 gi|330508263|ref|YP_004384691.1| - 0.29 9.8 1.1 0.85 8.2 0.0 2.1 2 1 0 2 2 2 0 Tweety DUF4763 PF15960.5 gi|330508263|ref|YP_004384691.1| - 1.5 8.0 12.6 0.53 9.5 3.3 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF4763) Fib_alpha PF08702.10 gi|330508263|ref|YP_004384691.1| - 1.6 8.9 12.0 6 7.1 3.9 3.4 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family FAM76 PF16046.5 gi|330508263|ref|YP_004384691.1| - 4.1 6.7 15.4 0.67 9.2 3.1 2.4 2 0 0 2 2 2 0 FAM76 protein DEAD PF00270.29 gi|330508264|ref|YP_004384692.1| - 4.4e-24 85.2 0.0 8.2e-24 84.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|330508264|ref|YP_004384692.1| - 5.1e-10 39.6 0.0 1e-09 38.7 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|330508264|ref|YP_004384692.1| - 2.2e-08 34.4 0.0 1.5e-07 31.8 0.0 2.4 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|330508264|ref|YP_004384692.1| - 4.8e-08 33.5 0.4 4.8e-08 33.5 0.4 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF2508 PF10704.9 gi|330508264|ref|YP_004384692.1| - 0.025 14.7 0.2 0.43 10.8 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2508) HHH PF00633.23 gi|330508264|ref|YP_004384692.1| - 0.084 12.8 0.0 0.96 9.5 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|330508264|ref|YP_004384692.1| - 0.085 12.7 0.0 0.38 10.6 0.0 2.1 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda Aminotran_1_2 PF00155.21 gi|330508265|ref|YP_004384693.1| - 4.8e-61 206.9 0.0 5.5e-61 206.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II tRNA-synt_1 PF00133.22 gi|330508266|ref|YP_004384694.1| - 1.8e-57 195.0 0.0 1.2e-41 142.7 0.0 3.0 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|330508266|ref|YP_004384694.1| - 2.1e-22 79.4 0.0 6e-10 38.4 0.1 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|330508266|ref|YP_004384694.1| - 1.1e-21 77.4 0.0 2.1e-21 76.5 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|330508266|ref|YP_004384694.1| - 4.1e-08 32.9 0.0 9.4e-08 31.8 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|330508266|ref|YP_004384694.1| - 2.7e-07 30.2 0.0 0.0004 19.8 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|330508266|ref|YP_004384694.1| - 0.032 13.2 0.0 0.052 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|330508266|ref|YP_004384694.1| - 0.037 13.0 0.0 0.066 12.2 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (R) CPSase_L_D3 PF02787.19 gi|330508266|ref|YP_004384694.1| - 0.076 13.4 0.1 0.2 12.0 0.1 1.7 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Prenyltransf PF01255.19 gi|330508266|ref|YP_004384694.1| - 0.14 11.7 0.0 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 Putative undecaprenyl diphosphate synthase MqsA_antitoxin PF15731.5 gi|330508267|ref|YP_004384695.1| - 0.009 16.1 0.2 0.01 15.9 0.2 1.1 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA 4PPT_N PF17837.1 gi|330508267|ref|YP_004384695.1| - 0.11 12.7 0.2 0.17 12.0 0.2 1.3 1 0 0 1 1 1 0 4'-phosphopantetheinyl transferase N-terminal domain DUF4411 PF14367.6 gi|330508268|ref|YP_004384696.1| - 0.016 15.1 0.0 0.03 14.2 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) PIN PF01850.21 gi|330508268|ref|YP_004384696.1| - 0.017 15.6 0.0 0.024 15.1 0.0 1.1 1 0 0 1 1 1 0 PIN domain Prok-E2_C PF14459.6 gi|330508269|ref|YP_004384697.1| - 0.11 12.6 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Prokaryotic E2 family C HicB_lk_antitox PF15919.5 gi|330508270|ref|YP_004384698.1| - 6.3e-05 23.1 0.0 8.9e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|330508271|ref|YP_004384699.1| - 0.0012 18.9 0.0 0.0013 18.8 0.0 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, MqsA_antitoxin PF15731.5 gi|330508272|ref|YP_004384700.1| - 8.1e-06 26.0 0.8 9e-06 25.8 0.8 1.1 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA zf-C4_Topoisom PF01396.19 gi|330508272|ref|YP_004384700.1| - 0.002 17.9 1.7 0.019 14.7 0.2 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zf-FPG_IleRS PF06827.14 gi|330508272|ref|YP_004384700.1| - 0.0031 17.3 2.2 0.39 10.6 0.1 2.4 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS DNA_ligase_ZBD PF03119.16 gi|330508272|ref|YP_004384700.1| - 0.0056 16.7 5.1 0.021 14.8 3.0 2.7 2 1 1 3 3 3 1 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.14 gi|330508272|ref|YP_004384700.1| - 0.02 14.7 2.1 0.045 13.6 0.1 2.2 2 1 0 2 2 2 0 Rad50 zinc hook motif YhfH PF14149.6 gi|330508272|ref|YP_004384700.1| - 0.036 14.0 3.2 0.97 9.5 0.2 2.8 2 1 0 2 2 2 0 YhfH-like protein DZR PF12773.7 gi|330508272|ref|YP_004384700.1| - 0.037 14.1 0.2 0.085 12.9 0.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_12 PF18658.1 gi|330508272|ref|YP_004384700.1| - 0.11 12.1 0.5 10 5.8 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger C2H2-type zf-ACC PF17848.1 gi|330508272|ref|YP_004384700.1| - 0.12 12.4 2.8 3.7 7.7 0.1 2.7 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|330508272|ref|YP_004384700.1| - 0.17 12.1 3.2 0.86 9.8 0.0 2.7 2 1 1 3 3 2 0 Zinc ribbon domain ADK_lid PF05191.14 gi|330508272|ref|YP_004384700.1| - 0.19 11.7 2.6 4.2 7.4 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF4258 PF14076.6 gi|330508273|ref|YP_004384701.1| - 5.4e-10 39.5 0.0 1.3e-09 38.3 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4258) CrtC PF07143.11 gi|330508274|ref|YP_004384702.1| - 1.5 9.5 6.3 13 6.4 4.8 2.8 2 2 0 2 2 2 0 CrtC N-terminal lipocalin domain LDcluster4 PF18306.1 gi|330508275|ref|YP_004384703.1| - 6.7e-40 136.3 0.9 7.5e-40 136.1 0.9 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|330508275|ref|YP_004384703.1| - 1.9e-10 40.9 0.0 2.9e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|330508275|ref|YP_004384703.1| - 0.00039 19.7 1.9 0.017 14.4 0.9 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A SMC_ScpB PF04079.16 gi|330508277|ref|YP_004384705.1| - 1.5e-37 128.7 0.4 2.7e-37 127.9 0.1 1.5 2 0 0 2 2 2 1 Segregation and condensation complex subunit ScpB HTH_24 PF13412.6 gi|330508277|ref|YP_004384705.1| - 0.0021 17.6 0.5 0.71 9.5 0.0 3.0 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|330508277|ref|YP_004384705.1| - 0.049 13.7 0.6 0.6 10.2 0.0 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 gi|330508277|ref|YP_004384705.1| - 0.062 13.2 1.3 1.8 8.5 0.4 3.1 2 1 0 2 2 2 0 MarR family GntR PF00392.21 gi|330508277|ref|YP_004384705.1| - 0.21 11.3 1.9 1.1 8.9 0.2 3.0 4 0 0 4 4 4 0 Bacterial regulatory proteins, gntR family DUF3883 PF13020.6 gi|330508278|ref|YP_004384706.1| - 9.1e-19 67.3 0.0 2.7e-18 65.8 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) Helicase_C PF00271.31 gi|330508278|ref|YP_004384706.1| - 9.1e-16 58.2 0.0 3.3e-15 56.4 0.0 2.1 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|330508278|ref|YP_004384706.1| - 9.6e-16 57.4 0.0 2.1e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|330508278|ref|YP_004384706.1| - 2e-11 44.2 0.2 5.6e-11 42.7 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|330508278|ref|YP_004384706.1| - 1.7e-07 31.2 0.0 3.6e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA PF00004.29 gi|330508278|ref|YP_004384706.1| - 1.7e-05 25.2 0.0 0.0012 19.3 0.0 2.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|330508278|ref|YP_004384706.1| - 0.00028 20.3 0.0 0.00058 19.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_34 PF13872.6 gi|330508278|ref|YP_004384706.1| - 0.0027 16.7 0.0 0.0099 14.8 0.0 1.8 1 1 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 Helicase_RecD PF05127.14 gi|330508278|ref|YP_004384706.1| - 0.0027 17.6 0.0 0.008 16.1 0.0 1.8 1 0 0 1 1 1 1 Helicase Flavi_DEAD PF07652.14 gi|330508278|ref|YP_004384706.1| - 0.0029 17.6 0.0 0.0062 16.5 0.0 1.5 1 0 0 1 1 1 1 Flavivirus DEAD domain Histone_HNS PF00816.21 gi|330508278|ref|YP_004384706.1| - 9 7.2 5.8 9.1 7.2 0.4 3.1 3 0 0 3 3 2 0 H-NS histone family UPF0175 PF03683.13 gi|330508279|ref|YP_004384707.1| - 2.7e-11 43.0 0.0 5.1e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HemN_C PF06969.16 gi|330508279|ref|YP_004384707.1| - 0.14 12.2 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_45 PF14947.6 gi|330508279|ref|YP_004384707.1| - 0.14 12.2 0.1 0.46 10.5 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DUF3368 PF11848.8 gi|330508280|ref|YP_004384708.1| - 2.8e-05 23.8 0.0 6.3e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) RSV_NS2 PF03113.14 gi|330508280|ref|YP_004384708.1| - 0.039 14.0 0.5 0.076 13.0 0.5 1.5 1 0 0 1 1 1 0 Respiratory synctial virus non-structural protein NS2 DUF1156 PF06634.12 gi|330508282|ref|YP_004384710.1| - 7.2e-23 80.5 1.9 2.2e-22 79.0 1.9 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) MethyltransfD12 PF02086.15 gi|330508282|ref|YP_004384710.1| - 0.0018 18.0 0.0 0.0062 16.2 0.0 1.7 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase UPF0020 PF01170.18 gi|330508282|ref|YP_004384710.1| - 0.009 15.7 0.0 0.81 9.3 0.0 2.7 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 DUF4423 PF14394.6 gi|330508283|ref|YP_004384711.1| - 0.022 14.5 0.0 0.025 14.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HemN_C PF06969.16 gi|330508283|ref|YP_004384711.1| - 0.11 12.6 0.2 17 5.5 0.0 2.5 2 1 1 3 3 3 0 HemN C-terminal domain GntR PF00392.21 gi|330508283|ref|YP_004384711.1| - 0.15 11.7 0.1 0.24 11.1 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF758 PF05527.11 gi|330508283|ref|YP_004384711.1| - 0.16 12.0 0.0 0.21 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF758) DUF499 PF04465.12 gi|330508284|ref|YP_004384712.1| - 9.4e-22 76.7 0.0 6.6e-18 63.9 0.0 3.1 2 1 1 3 3 3 3 Protein of unknown function (DUF499) Ribosomal_S24e PF01282.19 gi|330508284|ref|YP_004384712.1| - 0.033 14.1 0.1 0.15 12.1 0.0 2.1 3 0 0 3 3 3 0 Ribosomal protein S24e SMC_ScpA PF02616.14 gi|330508285|ref|YP_004384713.1| - 4.5e-18 66.0 0.3 1.8e-16 60.8 0.3 2.6 1 1 0 1 1 1 1 Segregation and condensation protein ScpA NAM-associated PF14303.6 gi|330508285|ref|YP_004384713.1| - 0.057 14.1 0.1 0.078 13.7 0.1 1.2 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain Snf7 PF03357.21 gi|330508285|ref|YP_004384713.1| - 0.19 11.3 1.9 0.16 11.6 0.5 1.5 2 0 0 2 2 2 0 Snf7 SMC_N PF02463.19 gi|330508286|ref|YP_004384714.1| - 8.7e-68 228.0 1.1 1.1e-67 227.7 1.1 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|330508286|ref|YP_004384714.1| - 3e-29 101.7 0.0 1.5e-28 99.5 0.0 2.2 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_15 PF13175.6 gi|330508286|ref|YP_004384714.1| - 4.5e-18 66.1 0.3 8.1e-14 52.1 0.0 3.9 2 2 0 2 2 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|330508286|ref|YP_004384714.1| - 2.9e-14 54.0 4.7 2.9e-14 54.0 4.7 6.5 2 2 1 3 3 1 1 AAA domain AAA_21 PF13304.6 gi|330508286|ref|YP_004384714.1| - 4.9e-10 39.7 4.5 0.00018 21.4 0.0 3.4 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|330508286|ref|YP_004384714.1| - 3.7e-07 29.8 0.0 8.2e-07 28.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain PI3K_P85_iSH2 PF16454.5 gi|330508286|ref|YP_004384714.1| - 0.00028 20.5 7.3 0.00028 20.5 7.3 6.0 3 2 3 6 6 5 2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain MscS_porin PF12795.7 gi|330508286|ref|YP_004384714.1| - 0.0081 15.7 72.5 0.87 9.1 10.8 5.2 2 2 3 5 5 5 3 Mechanosensitive ion channel porin domain DUF4472 PF14739.6 gi|330508286|ref|YP_004384714.1| - 0.0092 16.7 2.2 0.0092 16.7 2.2 7.1 4 2 2 7 7 7 1 Domain of unknown function (DUF4472) TMCO5 PF14992.6 gi|330508286|ref|YP_004384714.1| - 0.022 14.4 0.6 0.022 14.4 0.6 5.1 4 2 1 5 5 5 0 TMCO5 family Spc7 PF08317.11 gi|330508286|ref|YP_004384714.1| - 0.022 13.7 90.0 0.0054 15.7 8.6 6.3 2 2 4 6 6 6 0 Spc7 kinetochore protein SlyX PF04102.12 gi|330508286|ref|YP_004384714.1| - 0.028 15.0 55.8 0.052 14.2 2.1 10.2 7 3 2 9 9 8 0 SlyX HetR_C PF18460.1 gi|330508286|ref|YP_004384714.1| - 0.072 13.0 3.5 9.4 6.2 0.3 3.9 2 0 0 2 2 2 0 Heterocyst differentiation regulator C-terminal Hood domain XhlA PF10779.9 gi|330508286|ref|YP_004384714.1| - 0.12 12.6 0.0 0.12 12.6 0.0 9.9 8 2 2 10 10 9 0 Haemolysin XhlA AAA_22 PF13401.6 gi|330508286|ref|YP_004384714.1| - 0.71 10.1 8.6 7.9 6.8 0.0 4.2 3 2 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|330508286|ref|YP_004384714.1| - 1.1 9.6 0.0 1.1 9.6 0.0 4.6 4 3 0 4 4 3 0 AAA ATPase domain ABC_tran PF00005.27 gi|330508286|ref|YP_004384714.1| - 1.4 9.4 0.0 1.4 9.4 0.0 4.7 3 2 0 3 3 3 0 ABC transporter Filament PF00038.21 gi|330508286|ref|YP_004384714.1| - 1.7 8.2 74.5 0.014 15.0 3.9 5.4 3 1 1 5 5 4 0 Intermediate filament protein DUF3287 PF11690.8 gi|330508286|ref|YP_004384714.1| - 3 7.6 17.2 1.1 9.0 1.1 4.4 4 0 0 4 4 4 0 Protein of unknown function (DUF3287) Radical_SAM PF04055.21 gi|330508287|ref|YP_004384715.1| - 7.2e-14 52.5 5.1 4e-12 46.8 5.1 2.6 1 1 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|330508288|ref|YP_004384716.1| - 6e-13 49.5 0.0 2.3e-12 47.6 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|330508288|ref|YP_004384716.1| - 1.2e-06 28.9 0.2 3.1e-06 27.6 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|330508288|ref|YP_004384716.1| - 0.00056 20.2 0.0 0.0029 17.9 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330508288|ref|YP_004384716.1| - 0.028 14.5 0.0 0.075 13.2 0.0 1.8 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF2124 PF09897.9 gi|330508289|ref|YP_004384717.1| - 6.9e-55 184.8 0.5 7.9e-55 184.6 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Y1_Tnp PF01797.16 gi|330508290|ref|YP_004384718.1| - 4.2e-33 114.0 1.0 5e-33 113.8 1.0 1.1 1 0 0 1 1 1 1 Transposase IS200 like DUF772 PF05598.11 gi|330508291|ref|YP_004384719.1| - 2.6e-21 75.4 0.0 4.8e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|330508291|ref|YP_004384719.1| - 1.5e-15 57.5 4.6 5e-15 55.7 4.6 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|330508291|ref|YP_004384719.1| - 2.9e-05 23.8 0.3 0.00012 21.8 0.3 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.6 gi|330508291|ref|YP_004384719.1| - 3.1e-05 24.2 0.4 5.3e-05 23.4 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain EnY2 PF10163.9 gi|330508291|ref|YP_004384719.1| - 0.052 13.9 0.1 0.12 12.8 0.1 1.6 1 0 0 1 1 1 0 Transcription factor e(y)2 OrfB_Zn_ribbon PF07282.11 gi|330508292|ref|YP_004384720.1| - 8.5e-23 80.1 0.2 2.9e-22 78.4 0.0 2.0 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330508292|ref|YP_004384720.1| - 2.6e-07 30.9 0.5 2.6e-07 30.9 0.5 1.7 2 0 0 2 2 2 1 Probable transposase DZR PF12773.7 gi|330508292|ref|YP_004384720.1| - 0.029 14.4 0.1 0.064 13.3 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|330508292|ref|YP_004384720.1| - 0.078 13.0 0.0 0.2 11.7 0.0 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|330508292|ref|YP_004384720.1| - 0.14 12.0 0.6 0.27 11.1 0.6 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF4337 PF14235.6 gi|330508292|ref|YP_004384720.1| - 0.59 10.2 3.8 9.2 6.4 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) Radical_SAM PF04055.21 gi|330508293|ref|YP_004384721.1| - 1.1e-23 84.4 0.0 2.7e-23 83.2 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|330508293|ref|YP_004384721.1| - 9.7e-15 54.6 0.0 1.8e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|330508293|ref|YP_004384721.1| - 8.2e-05 22.7 0.0 0.00019 21.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|330508293|ref|YP_004384721.1| - 0.00021 21.6 0.0 0.00038 20.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF998 PF06197.13 gi|330508294|ref|YP_004384722.1| - 0.024 14.2 9.2 0.029 14.0 9.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) 5TM-5TMR_LYT PF07694.12 gi|330508294|ref|YP_004384722.1| - 0.031 13.8 12.1 0.04 13.4 12.1 1.1 1 0 0 1 1 1 0 5TMR of 5TMR-LYT PHO4 PF01384.20 gi|330508294|ref|YP_004384722.1| - 0.098 11.7 8.9 0.12 11.4 8.9 1.1 1 0 0 1 1 1 0 Phosphate transporter family DUF202 PF02656.15 gi|330508294|ref|YP_004384722.1| - 0.16 12.4 11.3 9.8 6.7 1.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Cation_efflux PF01545.21 gi|330508294|ref|YP_004384722.1| - 0.32 10.7 13.0 0.76 9.5 13.0 1.5 1 1 0 1 1 1 0 Cation efflux family DUF1129 PF06570.11 gi|330508294|ref|YP_004384722.1| - 0.34 10.4 9.1 0.088 12.3 1.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) Peptidase_U4 PF03419.13 gi|330508294|ref|YP_004384722.1| - 0.37 10.0 9.8 0.49 9.6 9.8 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA GtrA PF04138.14 gi|330508294|ref|YP_004384722.1| - 0.84 9.9 9.1 1.6 9.0 9.0 1.5 1 1 0 1 1 1 0 GtrA-like protein ABC2_membrane_5 PF13346.6 gi|330508294|ref|YP_004384722.1| - 1.3 8.5 17.8 3.7 7.0 17.8 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2070 PF09843.9 gi|330508294|ref|YP_004384722.1| - 1.5 7.0 9.8 1.8 6.8 9.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Phage_holin_4_2 PF04020.13 gi|330508294|ref|YP_004384722.1| - 2.7 8.7 15.3 2.3 8.9 12.2 2.2 1 1 0 1 1 1 0 Mycobacterial 4 TMS phage holin, superfamily IV MgtE PF01769.16 gi|330508294|ref|YP_004384722.1| - 5.2 7.5 15.4 11 6.5 5.4 2.1 1 1 1 2 2 2 0 Divalent cation transporter Hpt PF01627.23 gi|330508295|ref|YP_004384723.1| - 6.2e-13 48.8 1.2 9.6e-13 48.2 1.2 1.3 1 0 0 1 1 1 1 Hpt domain XkdW PF09636.10 gi|330508295|ref|YP_004384723.1| - 0.099 12.7 0.2 0.16 12.1 0.2 1.3 1 0 0 1 1 1 0 XkdW protein DUF2284 PF10050.9 gi|330508296|ref|YP_004384724.1| - 2.4e-54 183.5 0.1 2.7e-54 183.3 0.1 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Usp PF00582.26 gi|330508297|ref|YP_004384725.1| - 3.1e-38 131.5 1.4 3.4e-18 66.5 0.5 3.9 2 2 0 2 2 2 2 Universal stress protein family DNA_photolyase PF00875.18 gi|330508297|ref|YP_004384725.1| - 0.08 13.0 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 DNA photolyase VIT PF08487.10 gi|330508298|ref|YP_004384726.1| - 5.2e-31 107.1 0.0 1.5e-30 105.7 0.0 1.8 1 0 0 1 1 1 1 Vault protein inter-alpha-trypsin domain VWA PF00092.28 gi|330508298|ref|YP_004384726.1| - 4.4e-19 69.4 0.0 7.3e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|330508298|ref|YP_004384726.1| - 4.5e-16 59.2 0.0 7.3e-16 58.5 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|330508298|ref|YP_004384726.1| - 1.1e-12 48.5 0.0 2e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VIT_2 PF13757.6 gi|330508298|ref|YP_004384726.1| - 0.00028 20.7 0.0 0.00097 19.0 0.0 1.9 2 0 0 2 2 2 1 Vault protein inter-alpha-trypsin domain VWA_CoxE PF05762.14 gi|330508298|ref|YP_004384726.1| - 0.00045 19.7 0.0 0.00085 18.8 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.9 gi|330508298|ref|YP_004384726.1| - 0.00088 19.4 0.1 0.027 14.6 0.0 2.6 2 0 0 2 2 2 1 VWA-like domain (DUF2201) CobT_C PF11775.8 gi|330508298|ref|YP_004384726.1| - 0.0057 16.3 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT VWA domain ArsA_ATPase PF02374.15 gi|330508299|ref|YP_004384727.1| - 1.5e-70 237.8 0.0 1.7e-70 237.7 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|330508299|ref|YP_004384727.1| - 5.9e-10 39.3 0.0 1.8e-09 37.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|330508299|ref|YP_004384727.1| - 4.7e-08 33.1 0.0 7.1e-08 32.6 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|330508299|ref|YP_004384727.1| - 6.5e-08 32.3 0.5 0.0074 15.8 0.2 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|330508299|ref|YP_004384727.1| - 0.042 13.3 0.1 0.15 11.5 0.0 1.8 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Pur_ac_phosph_N PF16656.5 gi|330508300|ref|YP_004384728.1| - 0.055 14.1 0.0 0.26 11.9 0.0 1.9 2 0 0 2 2 2 0 Purple acid Phosphatase, N-terminal domain TB PF00683.17 gi|330508301|ref|YP_004384729.1| - 6.9 6.5 11.9 0.47 10.3 1.7 2.3 1 1 1 2 2 2 0 TB domain PAPS_reduct PF01507.19 gi|330508302|ref|YP_004384730.1| - 8.1e-37 126.9 0.0 1.3e-36 126.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.7 gi|330508302|ref|YP_004384730.1| - 0.00062 20.3 12.7 0.0023 18.5 12.7 2.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330508302|ref|YP_004384730.1| - 0.0087 16.5 10.0 2.1 8.9 0.2 4.0 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330508302|ref|YP_004384730.1| - 0.012 15.4 2.2 0.012 15.4 2.2 3.1 4 0 0 4 4 4 0 4Fe-4S binding domain OTT_1508_deam PF14441.6 gi|330508302|ref|YP_004384730.1| - 0.086 12.9 0.2 0.3 11.1 0.2 1.9 1 0 0 1 1 1 0 OTT_1508-like deaminase QueC PF06508.13 gi|330508302|ref|YP_004384730.1| - 0.14 11.6 0.0 0.14 11.6 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Fer4_10 PF13237.6 gi|330508302|ref|YP_004384730.1| - 0.21 11.7 16.4 0.041 14.0 12.4 2.0 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330508302|ref|YP_004384730.1| - 0.24 11.5 24.3 0.055 13.6 3.3 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330508302|ref|YP_004384730.1| - 1.5 9.8 13.2 17 6.5 13.2 2.6 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain CSD PF00313.22 gi|330508303|ref|YP_004384731.1| - 4e-19 68.2 0.6 4.3e-19 68.1 0.6 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|330508303|ref|YP_004384731.1| - 0.037 13.7 1.4 0.06 13.0 1.4 1.5 1 1 0 1 1 1 0 Ribonuclease B OB domain S1 PF00575.23 gi|330508303|ref|YP_004384731.1| - 0.06 13.7 0.2 0.069 13.5 0.2 1.2 1 0 0 1 1 1 0 S1 RNA binding domain Tex_N PF09371.10 gi|330508304|ref|YP_004384732.1| - 1.2e-59 201.1 1.6 2e-59 200.4 1.6 1.4 1 0 0 1 1 1 1 Tex-like protein N-terminal domain Tex_YqgF PF16921.5 gi|330508304|ref|YP_004384732.1| - 9.1e-45 152.2 0.0 2.2e-44 150.9 0.0 1.7 1 0 0 1 1 1 1 Tex protein YqgF-like domain HHH_3 PF12836.7 gi|330508304|ref|YP_004384732.1| - 4.2e-28 97.4 0.0 8.6e-28 96.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_9 PF17674.1 gi|330508304|ref|YP_004384732.1| - 4e-22 78.9 0.1 3.5e-21 75.9 0.0 2.5 2 1 0 2 2 2 1 HHH domain S1 PF00575.23 gi|330508304|ref|YP_004384732.1| - 1.5e-19 70.1 1.8 1.5e-19 70.1 1.8 1.9 2 0 0 2 2 2 1 S1 RNA binding domain HHH_7 PF14635.6 gi|330508304|ref|YP_004384732.1| - 4.9e-08 33.3 0.0 1.1e-07 32.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif YqgF PF14639.6 gi|330508304|ref|YP_004384732.1| - 1.1e-07 31.8 0.3 6.2e-07 29.3 0.0 2.5 3 0 0 3 3 3 1 Holliday-junction resolvase-like of SPT6 HHH PF00633.23 gi|330508304|ref|YP_004384732.1| - 6.4e-05 22.6 0.0 0.00056 19.6 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|330508304|ref|YP_004384732.1| - 0.001 19.3 0.0 0.0049 17.1 0.0 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix motif T2SSK PF03934.13 gi|330508304|ref|YP_004384732.1| - 0.0025 17.3 0.1 0.01 15.3 0.0 2.0 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein K HHH_5 PF14520.6 gi|330508304|ref|YP_004384732.1| - 0.0046 17.5 0.2 0.22 12.2 0.0 3.4 3 1 0 3 3 2 1 Helix-hairpin-helix domain PsbU PF06514.11 gi|330508304|ref|YP_004384732.1| - 0.028 14.4 0.0 0.058 13.4 0.0 1.4 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) E3_binding PF02817.17 gi|330508304|ref|YP_004384732.1| - 0.39 11.1 7.2 2.5 8.5 0.0 4.7 6 0 0 6 6 5 0 e3 binding domain OMPdecase PF00215.24 gi|330508305|ref|YP_004384733.1| - 3.7e-37 128.1 0.0 4.7e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family ThiG PF05690.14 gi|330508305|ref|YP_004384733.1| - 0.017 14.5 0.6 0.017 14.5 0.6 2.0 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|330508305|ref|YP_004384733.1| - 0.041 13.2 0.1 0.078 12.3 0.1 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase RST PF12174.8 gi|330508305|ref|YP_004384733.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 RCD1-SRO-TAF4 (RST) plant domain DDE_Tnp_1 PF01609.21 gi|330508308|ref|YP_004384736.1| - 1.3e-20 74.0 1.2 1.8e-20 73.5 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|330508308|ref|YP_004384736.1| - 0.093 11.0 0.2 0.37 9.0 0.2 1.8 1 1 0 1 1 1 0 Transposase DDE domain group 1 Lar_restr_allev PF14354.6 gi|330508309|ref|YP_004384737.1| - 0.022 15.1 0.2 0.045 14.1 0.2 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar Thg1 PF04446.12 gi|330508310|ref|YP_004384738.1| - 0.032 14.3 0.3 6.9 6.7 0.0 2.2 2 0 0 2 2 2 0 tRNAHis guanylyltransferase WD40 PF00400.32 gi|330508311|ref|YP_004384739.1| - 5.2e-11 42.9 4.9 0.1 13.5 0.0 6.6 5 1 1 6 6 6 3 WD domain, G-beta repeat ANAPC4_WD40 PF12894.7 gi|330508311|ref|YP_004384739.1| - 7.7e-11 42.2 0.0 0.29 11.5 0.0 5.6 3 1 2 5 5 5 3 Anaphase-promoting complex subunit 4 WD40 domain Nbas_N PF15492.6 gi|330508311|ref|YP_004384739.1| - 4.2e-07 29.6 0.3 0.028 13.8 0.0 5.0 2 2 4 6 6 6 2 Neuroblastoma-amplified sequence, N terminal PQQ_2 PF13360.6 gi|330508311|ref|YP_004384739.1| - 1.1e-05 25.1 0.0 0.058 13.0 0.0 2.7 3 0 0 3 3 3 2 PQQ-like domain PD40 PF07676.12 gi|330508311|ref|YP_004384739.1| - 2.3e-05 24.2 4.9 2.2 8.3 0.0 5.3 6 0 0 6 6 6 3 WD40-like Beta Propeller Repeat Glucosaminidase PF01832.20 gi|330508311|ref|YP_004384739.1| - 7e-05 23.3 0.0 0.00013 22.4 0.0 1.5 1 0 0 1 1 1 1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Ge1_WD40 PF16529.5 gi|330508311|ref|YP_004384739.1| - 0.0033 16.4 0.1 2.7 6.9 0.0 4.2 2 1 1 5 5 5 1 WD40 region of Ge1, enhancer of mRNA-decapping protein RAB3GAP2_N PF14655.6 gi|330508311|ref|YP_004384739.1| - 0.027 13.7 0.1 6.7 5.8 0.0 3.4 2 2 2 4 4 4 0 Rab3 GTPase-activating protein regulatory subunit N-terminus PQQ PF01011.21 gi|330508311|ref|YP_004384739.1| - 0.075 13.0 0.3 69 3.6 0.0 3.7 3 0 0 3 3 3 0 PQQ enzyme repeat Pep_deformylase PF01327.21 gi|330508311|ref|YP_004384739.1| - 0.18 11.4 0.0 9.1 5.9 0.0 2.4 2 0 0 2 2 2 0 Polypeptide deformylase HTH_Tnp_1 PF01527.20 gi|330508312|ref|YP_004384740.1| - 2.7e-10 40.4 0.1 2.9e-10 40.3 0.1 1.1 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 gi|330508312|ref|YP_004384740.1| - 6.6e-05 22.6 0.5 9.2e-05 22.1 0.5 1.3 1 1 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|330508312|ref|YP_004384740.1| - 0.052 13.6 0.0 0.068 13.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 gi|330508312|ref|YP_004384740.1| - 0.064 13.4 0.1 0.1 12.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.16 gi|330508312|ref|YP_004384740.1| - 0.067 13.2 0.0 0.072 13.1 0.0 1.1 1 0 0 1 1 1 0 Transposase Glu_cyclase_2 PF05096.12 gi|330508313|ref|YP_004384741.1| - 9.2e-98 326.7 0.0 1.1e-97 326.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine cyclotransferase Rhomboid PF01694.22 gi|330508314|ref|YP_004384742.1| - 1.1e-33 116.4 19.4 1.1e-33 116.4 19.4 1.6 1 1 1 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|330508314|ref|YP_004384742.1| - 1.1e-05 25.9 0.2 1.1e-05 25.9 0.2 2.4 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) NYN PF01936.18 gi|330508315|ref|YP_004384743.1| - 1.1e-21 77.8 0.0 1.4e-21 77.5 0.0 1.1 1 0 0 1 1 1 1 NYN domain TatD_DNase PF01026.21 gi|330508316|ref|YP_004384744.1| - 6.1e-66 222.4 0.1 7e-66 222.2 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 gi|330508316|ref|YP_004384744.1| - 0.073 12.8 0.1 1.3 8.7 0.0 2.4 2 1 0 2 2 2 0 Amidohydrolase HMGL-like PF00682.19 gi|330508317|ref|YP_004384745.1| - 4.6e-84 282.1 3.4 4.6e-84 282.1 3.4 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|330508317|ref|YP_004384745.1| - 1.4e-30 105.9 3.4 3e-30 104.8 3.4 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain TPR_1 PF00515.28 gi|330508318|ref|YP_004384746.1| - 2.1e-69 226.7 20.4 1.9e-09 37.0 0.3 13.5 14 0 0 14 14 14 11 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330508318|ref|YP_004384746.1| - 4.6e-62 205.4 13.9 2.3e-07 30.4 0.3 11.3 3 2 8 11 11 11 11 TPR repeat TPR_2 PF07719.17 gi|330508318|ref|YP_004384746.1| - 2.3e-60 195.9 19.0 3.7e-07 29.8 0.4 13.1 13 0 0 13 13 13 9 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330508318|ref|YP_004384746.1| - 4.2e-52 170.0 14.9 1.3e-05 25.0 0.2 12.4 13 0 0 13 13 13 10 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330508318|ref|YP_004384746.1| - 1.4e-44 147.3 20.0 0.0026 18.0 0.0 12.2 11 1 1 12 12 12 11 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330508318|ref|YP_004384746.1| - 1.7e-43 147.0 14.7 4.1e-09 36.9 0.4 7.7 6 1 2 8 8 8 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330508318|ref|YP_004384746.1| - 5.3e-36 120.2 14.5 0.0013 19.4 0.4 11.4 2 2 9 11 11 11 10 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330508318|ref|YP_004384746.1| - 4.5e-30 103.6 8.8 0.00032 20.8 0.7 8.3 3 3 4 8 8 8 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330508318|ref|YP_004384746.1| - 6.6e-26 90.4 22.9 1.6e-06 28.3 0.1 9.5 2 2 8 10 10 10 9 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330508318|ref|YP_004384746.1| - 3.7e-21 75.4 18.8 5.7e-06 26.7 0.0 8.3 2 1 10 12 12 12 8 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330508318|ref|YP_004384746.1| - 1e-17 63.5 6.5 0.095 13.4 0.0 9.5 10 0 0 10 10 9 4 Tetratricopeptide repeat BTAD PF03704.17 gi|330508318|ref|YP_004384746.1| - 5.8e-15 56.0 6.5 0.002 18.5 0.0 5.1 3 1 2 5 5 5 4 Bacterial transcriptional activator domain ANAPC3 PF12895.7 gi|330508318|ref|YP_004384746.1| - 5.7e-14 52.1 8.6 0.0017 18.6 0.0 5.4 3 2 4 7 7 7 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|330508318|ref|YP_004384746.1| - 7e-10 38.2 12.9 0.019 15.0 0.6 7.7 7 1 1 8 8 7 3 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330508318|ref|YP_004384746.1| - 1.4e-09 38.2 14.7 0.8 9.8 0.0 8.6 1 1 7 9 9 9 3 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|330508318|ref|YP_004384746.1| - 9e-09 34.8 1.8 0.36 9.7 0.0 4.9 1 1 6 7 7 7 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|330508318|ref|YP_004384746.1| - 1.4e-08 34.7 1.0 0.91 9.6 0.0 6.2 7 0 0 7 7 6 1 Fis1 C-terminal tetratricopeptide repeat FAT PF02259.23 gi|330508318|ref|YP_004384746.1| - 7.4e-08 32.0 3.6 0.28 10.4 0.0 5.2 2 2 3 5 5 5 2 FAT domain SRP_TPR_like PF17004.5 gi|330508318|ref|YP_004384746.1| - 2.5e-06 27.5 0.0 0.011 15.7 0.0 3.8 2 2 2 4 4 4 1 Putative TPR-like repeat TPR_10 PF13374.6 gi|330508318|ref|YP_004384746.1| - 8.9e-06 25.4 25.8 0.049 13.5 0.6 8.5 10 0 0 10 10 9 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|330508318|ref|YP_004384746.1| - 0.0067 15.7 15.4 0.55 9.4 0.2 4.6 1 1 2 5 5 5 2 Tetratricopeptide repeat MIT PF04212.18 gi|330508318|ref|YP_004384746.1| - 0.01 15.9 7.0 9.7 6.3 0.1 6.5 6 0 0 6 6 6 0 MIT (microtubule interacting and transport) domain HTH_Bact PF18768.1 gi|330508318|ref|YP_004384746.1| - 0.012 15.2 4.7 4.1 7.1 0.0 5.6 5 1 0 5 5 5 0 Helix-turn-helix bacterial domain TPR_20 PF14561.6 gi|330508318|ref|YP_004384746.1| - 0.013 15.8 5.0 6.9 7.1 0.2 4.3 3 1 2 5 5 5 0 Tetratricopeptide repeat PPR PF01535.20 gi|330508318|ref|YP_004384746.1| - 0.026 14.8 0.3 21 5.6 0.0 4.5 5 0 0 5 5 3 0 PPR repeat DUF5588 PF17826.1 gi|330508318|ref|YP_004384746.1| - 0.049 12.5 0.0 0.35 9.7 0.0 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5588) NikR_C PF08753.11 gi|330508319|ref|YP_004384747.1| - 3.1e-33 113.8 1.5 4.3e-33 113.3 1.5 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|330508319|ref|YP_004384747.1| - 8.7e-08 31.8 0.1 2.2e-07 30.6 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|330508319|ref|YP_004384747.1| - 0.038 14.1 0.0 0.067 13.3 0.0 1.4 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Methyltransf_25 PF13649.6 gi|330508320|ref|YP_004384748.1| - 6.5e-05 23.6 0.0 0.00021 22.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330508320|ref|YP_004384748.1| - 0.0029 17.4 0.0 0.0052 16.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330508320|ref|YP_004384748.1| - 0.0041 17.8 0.0 0.0095 16.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|330508320|ref|YP_004384748.1| - 0.006 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|330508320|ref|YP_004384748.1| - 0.0062 16.4 0.0 0.0082 16.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|330508320|ref|YP_004384748.1| - 0.0091 15.3 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.12 gi|330508320|ref|YP_004384748.1| - 0.018 15.7 0.0 0.054 14.3 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330508320|ref|YP_004384748.1| - 0.034 13.5 0.0 0.085 12.2 0.0 1.6 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|330508320|ref|YP_004384748.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|330508320|ref|YP_004384748.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain DUF4198 PF10670.9 gi|330508321|ref|YP_004384749.1| - 3.6e-11 43.8 1.3 4.8e-11 43.4 1.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.6 gi|330508322|ref|YP_004384750.1| - 0.0014 18.9 0.0 0.0018 18.5 0.0 1.1 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain bMG3 PF11974.8 gi|330508322|ref|YP_004384750.1| - 0.0034 17.4 0.0 0.0038 17.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain DUF4198 PF10670.9 gi|330508322|ref|YP_004384750.1| - 0.064 13.6 0.0 0.068 13.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) Big_1 PF02369.16 gi|330508322|ref|YP_004384750.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) DUF4198 PF10670.9 gi|330508323|ref|YP_004384751.1| - 3.3e-16 60.3 0.1 7.2e-16 59.2 0.0 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4198) DUF4198 PF10670.9 gi|330508324|ref|YP_004384752.1| - 2.5e-21 77.0 0.0 3.5e-21 76.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) CbiM PF01891.16 gi|330508325|ref|YP_004384753.1| - 1.9e-46 158.5 21.9 2.2e-46 158.3 21.9 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region PAP2 PF01569.21 gi|330508325|ref|YP_004384753.1| - 7.8 6.3 9.7 7.3 6.4 0.2 2.3 2 0 0 2 2 2 0 PAP2 superfamily CarboxypepD_reg PF13620.6 gi|330508326|ref|YP_004384754.1| - 3.6e-05 23.9 0.1 4.6e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain bMG3 PF11974.8 gi|330508326|ref|YP_004384754.1| - 0.00017 21.5 0.0 0.00022 21.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain DUF4198 PF10670.9 gi|330508326|ref|YP_004384754.1| - 0.0004 20.8 0.0 0.0005 20.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) Big_1 PF02369.16 gi|330508326|ref|YP_004384754.1| - 0.0009 19.2 0.0 0.0012 18.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) TTR-52 PF01060.23 gi|330508326|ref|YP_004384754.1| - 0.013 16.2 0.0 0.017 15.8 0.0 1.2 1 0 0 1 1 1 0 Transthyretin-like family Big_3_5 PF16640.5 gi|330508326|ref|YP_004384754.1| - 0.023 14.9 0.0 0.031 14.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) DUF1416 PF07210.12 gi|330508326|ref|YP_004384754.1| - 0.058 13.3 0.1 0.07 13.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1416) Big_6 PF17936.1 gi|330508326|ref|YP_004384754.1| - 0.11 12.8 0.1 0.22 11.8 0.1 1.5 1 1 1 2 2 2 0 Bacterial Ig domain Big_1 PF02369.16 gi|330508327|ref|YP_004384755.1| - 0.00037 20.4 0.1 0.00056 19.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|330508327|ref|YP_004384755.1| - 0.0006 20.0 0.0 0.00078 19.7 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain bMG3 PF11974.8 gi|330508327|ref|YP_004384755.1| - 0.0025 17.8 0.0 0.0034 17.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain CarbopepD_reg_2 PF13715.6 gi|330508327|ref|YP_004384755.1| - 0.0089 16.0 0.1 0.048 13.7 0.0 1.9 1 1 1 2 2 2 1 CarboxypepD_reg-like domain CbiQ PF02361.16 gi|330508328|ref|YP_004384756.1| - 7.9e-40 136.8 10.7 9.9e-40 136.5 10.7 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|330508329|ref|YP_004384757.1| - 3.6e-31 108.5 0.0 5.4e-31 107.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330508329|ref|YP_004384757.1| - 3.9e-16 59.7 0.0 3.3e-10 40.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330508329|ref|YP_004384757.1| - 9.8e-09 35.0 0.0 1.9e-08 34.0 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|330508329|ref|YP_004384757.1| - 0.00042 20.0 0.1 0.00076 19.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|330508329|ref|YP_004384757.1| - 0.00073 20.0 0.1 0.0015 19.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|330508329|ref|YP_004384757.1| - 0.0011 18.9 0.1 0.0047 16.8 0.1 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|330508329|ref|YP_004384757.1| - 0.0021 18.6 0.0 0.0026 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|330508329|ref|YP_004384757.1| - 0.0024 16.6 0.0 0.52 8.9 0.0 2.0 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|330508329|ref|YP_004384757.1| - 0.007 16.1 0.0 0.57 9.9 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|330508329|ref|YP_004384757.1| - 0.011 16.1 0.1 0.17 12.2 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|330508329|ref|YP_004384757.1| - 0.034 13.7 0.3 0.086 12.4 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|330508329|ref|YP_004384757.1| - 0.06 12.9 0.0 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|330508329|ref|YP_004384757.1| - 0.066 12.9 0.0 1.3 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|330508329|ref|YP_004384757.1| - 0.071 13.3 0.0 0.25 11.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|330508329|ref|YP_004384757.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DivIVA PF05103.13 gi|330508330|ref|YP_004384758.1| - 1.1 9.4 8.8 1.2 9.2 7.0 2.1 1 1 1 2 2 2 0 DivIVA protein TPR_MLP1_2 PF07926.12 gi|330508330|ref|YP_004384758.1| - 4.2 7.5 16.2 4 7.5 2.4 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF4198 PF10670.9 gi|330508331|ref|YP_004384759.1| - 2.7e-18 67.1 0.0 3.9e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) bMG3 PF11974.8 gi|330508331|ref|YP_004384759.1| - 0.022 14.8 0.1 0.041 13.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain Humanin PF15040.6 gi|330508332|ref|YP_004384760.1| - 0.23 10.9 0.3 0.42 10.1 0.3 1.3 1 0 0 1 1 1 0 Humanin family RNase_HII PF01351.18 gi|330508333|ref|YP_004384761.1| - 1.3e-43 149.2 0.2 1.4e-43 149.0 0.2 1.0 1 0 0 1 1 1 1 Ribonuclease HII Aminotran_5 PF00266.19 gi|330508334|ref|YP_004384762.1| - 3.5e-41 141.4 0.0 4.3e-41 141.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|330508334|ref|YP_004384762.1| - 0.0014 18.0 0.1 0.013 14.9 0.0 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family YjeF_N PF03853.15 gi|330508334|ref|YP_004384762.1| - 0.033 14.1 0.1 1.1 9.1 0.0 2.6 3 0 0 3 3 3 0 YjeF-related protein N-terminus PALP PF00291.25 gi|330508335|ref|YP_004384763.1| - 4.1e-39 134.7 0.0 4.9e-39 134.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NAD_kinase PF01513.21 gi|330508336|ref|YP_004384764.1| - 1e-47 162.8 0.0 1.2e-47 162.5 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|330508336|ref|YP_004384764.1| - 4.6e-05 23.0 0.0 0.0001 21.9 0.0 1.6 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.22 gi|330508336|ref|YP_004384764.1| - 0.0019 18.1 0.0 0.0037 17.2 0.0 1.5 1 0 0 1 1 1 1 DeoR C terminal sensor domain ATP-synt_D PF01813.17 gi|330508337|ref|YP_004384765.1| - 2.3e-52 177.7 10.5 3e-52 177.3 10.5 1.1 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.25 gi|330508338|ref|YP_004384766.1| - 2.2e-60 204.0 0.0 3.1e-60 203.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|330508338|ref|YP_004384766.1| - 8.2e-12 45.5 0.6 8.2e-12 45.5 0.6 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|330508338|ref|YP_004384766.1| - 0.24 11.6 0.9 0.42 10.8 0.4 1.8 2 0 0 2 2 2 0 HAS barrel domain ATP-synt_ab PF00006.25 gi|330508339|ref|YP_004384767.1| - 5e-92 307.4 0.0 6.5e-92 307.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|330508339|ref|YP_004384767.1| - 1.3e-41 141.2 0.1 2.6e-41 140.3 0.1 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|330508339|ref|YP_004384767.1| - 1.9e-09 37.9 0.8 6.3e-09 36.2 0.8 2.0 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|330508339|ref|YP_004384767.1| - 0.019 14.9 0.7 0.089 12.8 0.1 2.1 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain AAA_22 PF13401.6 gi|330508339|ref|YP_004384767.1| - 0.079 13.2 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.22 gi|330508339|ref|YP_004384767.1| - 0.12 12.6 0.4 0.49 10.6 0.1 2.1 2 0 0 2 2 2 0 Peptidase family M23 ATP-synt_F PF01990.17 gi|330508340|ref|YP_004384768.1| - 1.5e-13 50.9 0.1 1.7e-13 50.7 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|330508341|ref|YP_004384769.1| - 1.9e-72 244.6 0.2 2.1e-72 244.5 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.18 gi|330508342|ref|YP_004384770.1| - 6.1e-16 58.4 15.0 5.5e-14 52.1 15.0 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|330508342|ref|YP_004384770.1| - 0.39 11.2 11.5 0.43 11.0 10.4 1.6 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit Atg14 PF10186.9 gi|330508342|ref|YP_004384770.1| - 1 8.4 5.6 1.5 7.8 5.6 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 tRNA_bind_2 PF13725.6 gi|330508342|ref|YP_004384770.1| - 1.8 8.2 8.1 0.26 11.0 0.7 2.3 2 1 1 3 3 3 0 Possible tRNA binding domain ATP-synt_C PF00137.21 gi|330508343|ref|YP_004384771.1| - 1.7e-11 44.3 12.3 1.7e-11 44.3 12.3 2.0 1 1 1 2 2 2 2 ATP synthase subunit C V_ATPase_I PF01496.19 gi|330508344|ref|YP_004384772.1| - 1.8e-33 115.5 3.9 3.5e-20 71.6 0.0 2.2 2 0 0 2 2 2 2 V-type ATPase 116kDa subunit family FliD_C PF07195.12 gi|330508344|ref|YP_004384772.1| - 0.11 11.9 0.1 3.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus V-ATPase_G_2 PF16999.5 gi|330508345|ref|YP_004384773.1| - 8.3e-07 29.4 12.8 1e-06 29.1 12.8 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|330508345|ref|YP_004384773.1| - 0.0016 18.5 15.8 0.0024 17.9 15.7 1.4 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) V-ATPase_G PF03179.15 gi|330508345|ref|YP_004384773.1| - 0.0017 18.9 10.4 0.0021 18.6 10.4 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit BMFP PF04380.13 gi|330508345|ref|YP_004384773.1| - 0.014 15.8 4.6 0.022 15.2 2.6 2.0 1 1 1 2 2 2 0 Membrane fusogenic activity UPF0556 PF10572.9 gi|330508345|ref|YP_004384773.1| - 0.24 10.9 4.5 0.12 11.9 1.2 1.8 1 1 1 2 2 2 0 Uncharacterised protein family UPF0556 RRF PF01765.19 gi|330508345|ref|YP_004384773.1| - 0.86 9.5 10.8 0.78 9.7 9.8 1.4 2 0 0 2 2 2 0 Ribosome recycling factor FBPase PF00316.20 gi|330508346|ref|YP_004384774.1| - 2.4e-37 128.3 0.0 3.3e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain F_bP_aldolase PF01116.20 gi|330508347|ref|YP_004384775.1| - 1.7e-16 60.6 0.0 2.1e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II Tagatose_6_P_K PF08013.11 gi|330508347|ref|YP_004384775.1| - 1e-06 27.7 0.0 1.5e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Tagatose 6 phosphate kinase FBPase_3 PF01950.16 gi|330508348|ref|YP_004384776.1| - 1.3e-181 603.5 0.0 1.5e-181 603.4 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Biotin_lipoyl PF00364.22 gi|330508348|ref|YP_004384776.1| - 0.081 12.8 0.0 0.22 11.4 0.0 1.7 1 1 0 1 1 1 0 Biotin-requiring enzyme GCIP PF13324.6 gi|330508349|ref|YP_004384777.1| - 0.095 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting TerB PF05099.13 gi|330508350|ref|YP_004384778.1| - 8e-17 61.5 0.4 1.3e-16 60.9 0.4 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TerB DUF533 PF04391.12 gi|330508350|ref|YP_004384778.1| - 2e-08 34.0 2.8 0.00031 20.3 0.4 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF533) zinc_ribbon_15 PF17032.5 gi|330508350|ref|YP_004384778.1| - 1.4e-07 32.1 2.9 2e-07 31.6 2.9 1.3 1 0 0 1 1 1 1 zinc-ribbon family DUF2600 PF10776.9 gi|330508350|ref|YP_004384778.1| - 0.0028 16.6 0.1 0.011 14.6 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2600) TF_Zn_Ribbon PF08271.12 gi|330508350|ref|YP_004384778.1| - 2 8.0 5.5 1.2 8.7 0.3 2.6 3 1 0 3 3 3 0 TFIIB zinc-binding TPR_1 PF00515.28 gi|330508351|ref|YP_004384779.1| - 5.2e-133 428.0 28.8 1.8e-11 43.3 0.1 12.2 12 0 0 12 12 12 12 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330508351|ref|YP_004384779.1| - 2.9e-110 359.7 55.0 3.4e-12 45.9 0.3 11.1 1 1 10 11 11 11 11 TPR repeat TPR_2 PF07719.17 gi|330508351|ref|YP_004384779.1| - 5e-110 351.0 29.2 1.8e-09 37.0 0.1 12.3 12 1 0 12 12 12 11 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330508351|ref|YP_004384779.1| - 1.4e-95 313.6 39.1 3.3e-16 59.6 1.9 7.1 4 2 4 8 8 8 8 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330508351|ref|YP_004384779.1| - 2.9e-90 289.1 21.0 7.6e-07 28.9 0.0 12.1 12 0 0 12 12 12 11 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330508351|ref|YP_004384779.1| - 1.9e-80 259.7 18.5 8.1e-06 25.9 0.1 12.1 12 0 0 12 12 12 11 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330508351|ref|YP_004384779.1| - 1.5e-63 206.0 36.0 1.1e-05 25.9 0.9 11.2 1 1 10 11 11 11 10 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330508351|ref|YP_004384779.1| - 5.7e-53 177.1 18.4 3.1e-08 33.8 0.1 9.3 4 3 5 9 9 9 8 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330508351|ref|YP_004384779.1| - 9.2e-50 163.1 17.0 0.00021 21.1 0.0 11.3 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330508351|ref|YP_004384779.1| - 2.5e-39 133.6 37.4 1.6e-08 35.0 1.8 7.3 5 2 2 7 7 7 7 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330508351|ref|YP_004384779.1| - 8.4e-37 123.4 14.3 0.046 14.4 0.1 11.4 11 0 0 11 11 11 9 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330508351|ref|YP_004384779.1| - 2.9e-33 113.9 5.0 0.00016 21.8 0.5 6.2 6 0 0 6 6 6 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|330508351|ref|YP_004384779.1| - 3.9e-31 106.0 35.4 0.05 13.5 0.2 11.7 12 0 0 12 12 12 9 Tetratricopeptide repeat MIT PF04212.18 gi|330508351|ref|YP_004384779.1| - 2.1e-28 98.1 47.2 0.015 15.4 0.8 11.2 11 0 0 11 11 11 11 MIT (microtubule interacting and transport) domain TPR_9 PF13371.6 gi|330508351|ref|YP_004384779.1| - 4.6e-26 90.8 21.5 1.7e-05 24.9 0.8 6.7 2 1 5 9 9 9 8 Tetratricopeptide repeat TPR_3 PF07720.12 gi|330508351|ref|YP_004384779.1| - 1.9e-22 78.8 27.0 0.028 14.4 0.0 11.2 11 0 0 11 11 11 6 Tetratricopeptide repeat NARP1 PF12569.8 gi|330508351|ref|YP_004384779.1| - 3.9e-17 62.3 20.1 0.0022 17.0 0.2 5.7 3 2 3 6 6 6 6 NMDA receptor-regulated protein 1 TPR_4 PF07721.14 gi|330508351|ref|YP_004384779.1| - 6.9e-16 57.2 5.4 14 6.6 0.0 10.1 10 0 0 10 10 9 0 Tetratricopeptide repeat PPR PF01535.20 gi|330508351|ref|YP_004384779.1| - 7.1e-15 54.1 3.8 25 5.4 0.0 10.8 11 0 0 11 11 11 0 PPR repeat TPR_15 PF13429.6 gi|330508351|ref|YP_004384779.1| - 5.9e-13 48.7 16.0 0.0027 17.0 0.5 8.3 1 1 7 8 8 8 6 Tetratricopeptide repeat TPR_21 PF09976.9 gi|330508351|ref|YP_004384779.1| - 2e-12 47.2 48.6 0.021 14.6 2.1 9.7 1 1 10 11 11 11 8 Tetratricopeptide repeat-like domain DUF3856 PF12968.7 gi|330508351|ref|YP_004384779.1| - 4.6e-12 46.2 13.5 4.6 7.3 0.1 10.1 3 2 5 8 8 8 0 Domain of Unknown Function (DUF3856) ANAPC5 PF12862.7 gi|330508351|ref|YP_004384779.1| - 5e-12 45.7 8.5 33 4.6 0.0 10.6 9 2 2 11 11 11 0 Anaphase-promoting complex subunit 5 BTAD PF03704.17 gi|330508351|ref|YP_004384779.1| - 6.8e-11 42.8 10.9 0.013 16.0 0.6 5.6 2 2 6 8 8 8 4 Bacterial transcriptional activator domain Imm31 PF15591.6 gi|330508351|ref|YP_004384779.1| - 3.1e-10 39.8 16.6 4.8 7.1 0.0 9.1 3 2 6 9 9 9 0 Immunity protein 31 Coatomer_E PF04733.14 gi|330508351|ref|YP_004384779.1| - 9.7e-07 28.5 1.2 0.27 10.6 0.0 4.1 2 1 3 5 5 5 1 Coatomer epsilon subunit DUF627 PF04781.12 gi|330508351|ref|YP_004384779.1| - 3.1e-05 23.9 0.0 1.4 9.0 0.0 4.8 4 2 0 5 5 5 2 Protein of unknown function (DUF627) SRP_TPR_like PF17004.5 gi|330508351|ref|YP_004384779.1| - 3.3e-05 23.9 0.2 3.1 7.8 0.0 5.0 3 2 0 3 3 3 1 Putative TPR-like repeat DUF4326 PF14216.6 gi|330508351|ref|YP_004384779.1| - 6.6e-05 23.5 0.1 53 4.6 0.0 6.4 1 1 4 5 5 5 0 Domain of unknown function (DUF4326) Wzy_C_2 PF11846.8 gi|330508351|ref|YP_004384779.1| - 8.1e-05 22.6 17.0 0.73 9.7 0.0 6.2 2 2 5 7 7 7 4 Virulence factor membrane-bound polymerase, C-terminal 4HB_MCP_1 PF12729.7 gi|330508351|ref|YP_004384779.1| - 0.00034 20.2 27.3 21 4.6 0.1 9.7 9 2 1 10 10 9 0 Four helix bundle sensory module for signal transduction RPN7 PF10602.9 gi|330508351|ref|YP_004384779.1| - 0.0014 18.4 14.7 1.9 8.1 0.2 8.0 1 1 7 8 8 8 1 26S proteasome subunit RPN7 Fis1_TPR_C PF14853.6 gi|330508351|ref|YP_004384779.1| - 0.0019 18.2 10.5 17 5.6 0.0 7.7 10 0 0 10 10 7 0 Fis1 C-terminal tetratricopeptide repeat PPR_2 PF13041.6 gi|330508351|ref|YP_004384779.1| - 0.0025 18.0 12.0 1.1e+02 3.1 0.0 8.8 11 0 0 11 11 9 0 PPR repeat family Adeno_VII PF03228.14 gi|330508351|ref|YP_004384779.1| - 0.0027 18.3 0.8 19 5.9 0.0 4.0 2 1 2 4 4 4 0 Adenoviral core protein VII PHP PF02811.19 gi|330508351|ref|YP_004384779.1| - 0.0048 17.2 8.2 52 4.1 0.0 6.5 4 3 3 7 7 7 0 PHP domain TPR_20 PF14561.6 gi|330508351|ref|YP_004384779.1| - 0.0052 17.1 20.9 4 7.9 0.7 6.5 4 2 3 8 8 8 1 Tetratricopeptide repeat DXP_reductoisom PF02670.16 gi|330508351|ref|YP_004384779.1| - 0.013 16.2 0.1 40 4.9 0.0 3.9 1 1 2 4 4 4 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase PPTA PF01239.22 gi|330508351|ref|YP_004384779.1| - 0.017 14.8 0.0 85 3.1 0.0 5.1 7 0 0 7 7 4 0 Protein prenyltransferase alpha subunit repeat FSH1 PF03959.13 gi|330508351|ref|YP_004384779.1| - 0.053 13.2 0.3 10 5.7 0.0 2.7 2 0 0 2 2 2 0 Serine hydrolase (FSH1) TetR_C_15 PF17918.1 gi|330508351|ref|YP_004384779.1| - 0.098 13.4 0.4 1.4e+02 3.3 0.0 4.8 4 2 3 7 7 5 0 Tetracyclin repressor-like, C-terminal domain SHNi-TPR PF10516.9 gi|330508351|ref|YP_004384779.1| - 0.17 11.4 15.8 96 2.6 0.0 7.7 10 0 0 10 10 9 0 SHNi-TPR Mif2_N PF15624.6 gi|330508351|ref|YP_004384779.1| - 0.24 12.1 0.3 6.5e+02 1.0 0.0 5.1 7 0 0 7 7 5 0 Kinetochore CENP-C fungal homologue, Mif2, N-terminal DUF2799 PF10973.8 gi|330508351|ref|YP_004384779.1| - 1.2 9.6 17.3 69 4.0 0.2 7.2 7 2 2 9 9 7 0 Protein of unknown function (DUF2799) Sda PF08970.10 gi|330508351|ref|YP_004384779.1| - 2.1 8.2 20.2 3e+02 1.3 0.0 9.7 12 0 0 12 12 12 0 Sporulation inhibitor A Allexi_40kDa PF05549.11 gi|330508352|ref|YP_004384780.1| - 0.00084 18.9 0.3 0.0011 18.6 0.3 1.1 1 0 0 1 1 1 1 Allexivirus 40kDa protein DUF4446 PF14584.6 gi|330508352|ref|YP_004384780.1| - 0.0023 18.0 3.1 0.0059 16.6 0.9 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF4446) AAA_13 PF13166.6 gi|330508352|ref|YP_004384780.1| - 0.0029 16.3 4.9 0.0037 16.0 4.9 1.1 1 0 0 1 1 1 1 AAA domain UPF0242 PF06785.11 gi|330508352|ref|YP_004384780.1| - 0.0041 17.3 5.1 0.005 17.0 5.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus SHE3 PF17078.5 gi|330508352|ref|YP_004384780.1| - 0.03 14.0 8.8 0.067 12.9 8.8 1.6 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 Vfa1 PF08432.10 gi|330508352|ref|YP_004384780.1| - 0.035 14.5 2.0 0.043 14.1 2.0 1.1 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Ntox15 PF15604.6 gi|330508352|ref|YP_004384780.1| - 0.035 14.2 1.6 0.035 14.2 1.6 1.7 1 1 1 2 2 2 0 Novel toxin 15 DUF4094 PF13334.6 gi|330508352|ref|YP_004384780.1| - 0.037 14.4 1.1 0.065 13.7 0.5 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) APG6_N PF17675.1 gi|330508352|ref|YP_004384780.1| - 0.055 14.0 5.5 0.051 14.1 4.2 1.6 1 1 0 1 1 1 0 Apg6 coiled-coil region ZapB PF06005.12 gi|330508352|ref|YP_004384780.1| - 0.07 13.6 5.7 0.28 11.7 1.5 2.4 2 0 0 2 2 2 0 Cell division protein ZapB SlyX PF04102.12 gi|330508352|ref|YP_004384780.1| - 0.093 13.4 1.6 0.17 12.5 0.9 1.9 2 0 0 2 2 2 0 SlyX Filament PF00038.21 gi|330508352|ref|YP_004384780.1| - 0.1 12.2 9.1 0.16 11.5 4.1 2.0 1 1 1 2 2 2 0 Intermediate filament protein Carboxyl_trans PF01039.22 gi|330508352|ref|YP_004384780.1| - 0.11 11.1 0.6 0.14 10.8 0.6 1.1 1 0 0 1 1 1 0 Carboxyl transferase domain Mod_r PF07200.13 gi|330508352|ref|YP_004384780.1| - 0.12 12.5 5.8 0.32 11.1 5.6 1.9 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Mt_ATP-synt_D PF05873.12 gi|330508352|ref|YP_004384780.1| - 0.12 12.2 7.9 0.097 12.5 3.0 2.1 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) DUF4407 PF14362.6 gi|330508352|ref|YP_004384780.1| - 0.15 11.4 5.3 0.26 10.6 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) LPP PF04728.13 gi|330508352|ref|YP_004384780.1| - 0.16 12.4 4.5 0.35 11.3 2.7 2.3 2 0 0 2 2 2 0 Lipoprotein leucine-zipper O-antigen_lig PF13425.6 gi|330508352|ref|YP_004384780.1| - 0.2 10.4 5.2 0.22 10.3 5.2 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF16 PF01519.16 gi|330508352|ref|YP_004384780.1| - 0.21 12.1 4.2 0.2 12.2 1.8 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF16 DUF641 PF04859.12 gi|330508352|ref|YP_004384780.1| - 0.23 11.8 4.8 0.37 11.1 2.3 2.0 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) Atg14 PF10186.9 gi|330508352|ref|YP_004384780.1| - 0.49 9.4 5.3 0.79 8.7 3.5 1.8 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DivIC PF04977.15 gi|330508352|ref|YP_004384780.1| - 0.57 10.0 7.9 0.11 12.2 3.5 2.1 2 1 0 2 2 2 0 Septum formation initiator LemA PF04011.12 gi|330508352|ref|YP_004384780.1| - 0.63 9.9 6.5 4.5 7.1 0.5 2.4 1 1 1 2 2 2 0 LemA family FlxA PF14282.6 gi|330508352|ref|YP_004384780.1| - 0.76 9.8 9.8 3.2 7.8 8.1 2.0 1 1 1 2 2 2 0 FlxA-like protein Occludin_ELL PF07303.13 gi|330508352|ref|YP_004384780.1| - 1.4 9.7 8.4 5 7.9 1.3 2.2 1 1 1 2 2 2 0 Occludin homology domain Fungal_TACC PF12709.7 gi|330508352|ref|YP_004384780.1| - 1.7 9.2 7.2 0.61 10.6 1.1 2.7 1 1 2 3 3 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins FliD_N PF02465.18 gi|330508352|ref|YP_004384780.1| - 7.8 7.3 9.1 10 6.9 0.1 3.3 1 1 3 4 4 4 0 Flagellar hook-associated protein 2 N-terminus ABC_tran PF00005.27 gi|330508353|ref|YP_004384781.1| - 3.7e-32 111.7 0.0 5.3e-32 111.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|330508353|ref|YP_004384781.1| - 7.1e-09 35.4 0.0 2.4e-05 23.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|330508353|ref|YP_004384781.1| - 7.3e-06 26.5 0.1 1.3e-05 25.7 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|330508353|ref|YP_004384781.1| - 0.0001 22.0 0.1 0.0002 21.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|330508353|ref|YP_004384781.1| - 0.00029 21.1 0.5 0.0027 18.0 0.5 2.4 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|330508353|ref|YP_004384781.1| - 0.00037 20.4 2.8 0.11 12.3 0.6 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|330508353|ref|YP_004384781.1| - 0.0013 18.7 0.4 0.003 17.5 0.1 1.7 2 1 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|330508353|ref|YP_004384781.1| - 0.0061 17.1 0.1 0.015 15.8 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|330508353|ref|YP_004384781.1| - 0.0072 15.0 0.0 0.029 13.0 0.0 1.8 1 1 1 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|330508353|ref|YP_004384781.1| - 0.011 15.7 0.4 0.65 9.9 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|330508353|ref|YP_004384781.1| - 0.013 15.1 0.0 0.28 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain PIN_4 PF13638.6 gi|330508353|ref|YP_004384781.1| - 0.022 15.0 0.0 0.035 14.4 0.0 1.3 1 0 0 1 1 1 0 PIN domain cobW PF02492.19 gi|330508353|ref|YP_004384781.1| - 0.034 13.7 0.1 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|330508353|ref|YP_004384781.1| - 0.04 13.6 0.0 0.086 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|330508353|ref|YP_004384781.1| - 0.061 12.4 0.3 0.13 11.3 0.1 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein Rad17 PF03215.15 gi|330508353|ref|YP_004384781.1| - 0.065 13.1 0.0 0.14 12.1 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|330508353|ref|YP_004384781.1| - 0.071 13.0 0.2 0.38 10.6 0.2 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|330508353|ref|YP_004384781.1| - 0.1 11.9 0.3 6.9 5.9 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_28 PF13521.6 gi|330508353|ref|YP_004384781.1| - 0.11 12.8 0.2 0.32 11.2 0.0 1.9 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|330508353|ref|YP_004384781.1| - 0.15 11.9 0.1 0.91 9.4 0.1 2.0 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.23 gi|330508353|ref|YP_004384781.1| - 0.18 11.9 0.2 0.67 10.1 0.1 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|330508353|ref|YP_004384781.1| - 0.33 11.5 1.8 0.63 10.6 1.7 1.9 1 1 0 1 1 1 0 AAA domain FtsX PF02687.21 gi|330508354|ref|YP_004384782.1| - 1.9e-16 60.3 2.5 1.9e-16 60.3 2.5 3.0 2 1 1 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|330508354|ref|YP_004384782.1| - 1.4e-10 41.9 0.1 2.3e-10 41.2 0.1 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain Lung_7-TM_R PF06814.13 gi|330508354|ref|YP_004384782.1| - 0.016 14.4 2.7 0.035 13.4 1.1 1.9 2 0 0 2 2 2 0 Lung seven transmembrane receptor FtsX PF02687.21 gi|330508355|ref|YP_004384783.1| - 7.6e-13 48.8 14.1 1.3e-11 44.8 2.4 3.2 3 0 0 3 3 3 2 FtsX-like permease family MacB_PCD PF12704.7 gi|330508355|ref|YP_004384783.1| - 4.2e-12 46.8 3.2 4.2e-12 46.8 3.2 1.5 2 0 0 2 2 2 1 MacB-like periplasmic core domain ABC2_membrane_3 PF12698.7 gi|330508355|ref|YP_004384783.1| - 0.0023 17.1 1.6 0.0023 17.1 1.6 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein Wzt_C PF14524.6 gi|330508356|ref|YP_004384784.1| - 0.036 14.1 0.0 0.041 13.9 0.0 1.1 1 0 0 1 1 1 0 Wzt C-terminal domain HTH_10 PF04967.12 gi|330508358|ref|YP_004384786.1| - 6.2e-20 70.8 0.1 9.9e-20 70.1 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|330508358|ref|YP_004384786.1| - 0.035 14.0 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_CodY PF08222.11 gi|330508358|ref|YP_004384786.1| - 0.054 13.1 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain DUF2633 PF11119.8 gi|330508359|ref|YP_004384787.1| - 0.12 12.3 0.1 0.19 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2633) HTH_3 PF01381.22 gi|330508360|ref|YP_004384788.1| - 8.6e-16 57.7 0.2 9.8e-16 57.6 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|330508360|ref|YP_004384788.1| - 2.6e-09 37.3 0.0 3.3e-09 37.0 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|330508360|ref|YP_004384788.1| - 2.2e-08 34.0 0.1 2.5e-08 33.8 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|330508360|ref|YP_004384788.1| - 7.9e-07 29.4 0.0 9e-07 29.2 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.6 gi|330508360|ref|YP_004384788.1| - 0.00065 19.6 0.1 0.00096 19.1 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_25 PF13413.6 gi|330508360|ref|YP_004384788.1| - 0.00076 19.3 0.1 0.0012 18.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|330508360|ref|YP_004384788.1| - 0.0048 16.4 0.3 0.007 15.9 0.3 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|330508360|ref|YP_004384788.1| - 0.024 14.4 0.4 0.024 14.4 0.4 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_37 PF13744.6 gi|330508360|ref|YP_004384788.1| - 0.053 13.5 0.0 0.065 13.2 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|330508360|ref|YP_004384788.1| - 0.055 13.3 0.0 0.13 12.1 0.0 1.7 1 1 0 1 1 1 0 MerR family regulatory protein Phage_CI_repr PF07022.13 gi|330508360|ref|YP_004384788.1| - 0.12 12.5 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|330508360|ref|YP_004384788.1| - 0.13 12.3 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_23 PF13384.6 gi|330508360|ref|YP_004384788.1| - 0.15 11.9 0.8 0.16 11.8 0.1 1.4 2 0 0 2 2 2 0 Homeodomain-like domain TerC PF03741.16 gi|330508361|ref|YP_004384789.1| - 0.00039 20.2 5.3 0.00049 19.8 5.3 1.0 1 0 0 1 1 1 1 Integral membrane protein TerC family MFS_1 PF07690.16 gi|330508361|ref|YP_004384789.1| - 0.017 14.1 11.4 0.045 12.7 11.4 1.6 1 1 0 1 1 1 0 Major Facilitator Superfamily DUF716 PF04819.12 gi|330508361|ref|YP_004384789.1| - 0.024 14.3 0.1 0.046 13.4 0.1 1.5 1 1 0 1 1 1 0 Family of unknown function (DUF716) XPB_DRD PF18458.1 gi|330508361|ref|YP_004384789.1| - 0.031 14.1 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 Xeroderma pigmentosum group B helicase damage recognition domain DUF533 PF04391.12 gi|330508361|ref|YP_004384789.1| - 0.089 12.4 0.1 0.11 12.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF533) DUF805 PF05656.14 gi|330508361|ref|YP_004384789.1| - 0.12 12.7 4.5 0.14 12.6 1.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF805) DUF3040 PF11239.8 gi|330508361|ref|YP_004384789.1| - 5.3 7.4 9.0 16 5.9 4.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF4131 PF13567.6 gi|330508361|ref|YP_004384789.1| - 5.5 6.6 8.6 0.63 9.7 2.6 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) HxlR PF01638.17 gi|330508362|ref|YP_004384790.1| - 5.3e-35 119.1 0.0 7.2e-35 118.7 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|330508362|ref|YP_004384790.1| - 0.0016 18.4 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|330508362|ref|YP_004384790.1| - 0.013 15.4 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.6 gi|330508362|ref|YP_004384790.1| - 0.018 15.2 0.0 0.028 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Flavin_Reduct PF01613.18 gi|330508363|ref|YP_004384791.1| - 1.9e-19 70.3 0.0 2.4e-19 69.9 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Nitroreductase PF00881.24 gi|330508364|ref|YP_004384792.1| - 2.8e-27 95.8 0.0 3.9e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4_6 PF12837.7 gi|330508364|ref|YP_004384792.1| - 2.8e-09 36.6 12.2 0.00012 21.9 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|330508364|ref|YP_004384792.1| - 7.8e-09 35.0 12.6 7.7e-05 22.3 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330508364|ref|YP_004384792.1| - 1.6e-08 35.0 18.4 3.5e-06 27.5 9.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain TM1586_NiRdase PF14512.6 gi|330508364|ref|YP_004384792.1| - 8.8e-08 32.0 0.1 0.022 14.3 0.0 2.9 2 1 1 3 3 3 3 Putative TM nitroreductase Fer4_9 PF13187.6 gi|330508364|ref|YP_004384792.1| - 1.4e-07 31.6 8.6 2.5e-07 30.8 8.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330508364|ref|YP_004384792.1| - 6.1e-07 29.5 22.0 9.1e-06 25.7 11.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330508364|ref|YP_004384792.1| - 2.2e-06 28.5 4.1 0.0045 17.9 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|330508364|ref|YP_004384792.1| - 1.1e-05 25.2 14.3 0.00075 19.5 3.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330508364|ref|YP_004384792.1| - 0.00014 22.3 12.7 0.012 16.1 12.9 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330508364|ref|YP_004384792.1| - 0.00018 21.5 8.6 0.085 13.0 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330508364|ref|YP_004384792.1| - 0.0023 18.4 12.6 0.043 14.3 2.4 2.4 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330508364|ref|YP_004384792.1| - 0.021 15.3 10.5 0.053 14.0 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Phage_cap_E PF03864.15 gi|330508364|ref|YP_004384792.1| - 0.042 13.0 0.2 0.061 12.5 0.2 1.1 1 0 0 1 1 1 0 Phage major capsid protein E Fer4_13 PF13370.6 gi|330508364|ref|YP_004384792.1| - 1.1 9.8 12.8 2.9 8.5 1.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|330508364|ref|YP_004384792.1| - 7.9 7.7 18.5 3.4 8.8 6.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330508364|ref|YP_004384792.1| - 8.6 6.6 11.9 3 8.1 1.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain CMD PF02627.20 gi|330508365|ref|YP_004384793.1| - 1.6e-36 124.2 0.8 2.3e-19 69.2 0.2 2.1 2 0 0 2 2 2 2 Carboxymuconolactone decarboxylase family TetR_N PF00440.23 gi|330508366|ref|YP_004384794.1| - 4e-11 42.5 0.0 6.7e-11 41.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_27 PF17935.1 gi|330508366|ref|YP_004384794.1| - 3.9e-05 23.6 0.1 0.00015 21.8 0.1 2.0 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|330508366|ref|YP_004384794.1| - 0.00027 21.2 0.5 0.00077 19.7 0.0 2.0 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|330508366|ref|YP_004384794.1| - 0.006 16.7 0.0 0.018 15.1 0.0 1.9 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_4 PF08359.11 gi|330508366|ref|YP_004384794.1| - 0.017 15.2 0.0 0.077 13.1 0.0 2.0 1 1 0 1 1 1 0 YsiA-like protein, C-terminal region Sigma54_CBD PF04963.13 gi|330508366|ref|YP_004384794.1| - 0.054 13.3 0.0 0.088 12.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain Erp_C PF06780.11 gi|330508366|ref|YP_004384794.1| - 0.074 13.1 0.0 0.15 12.1 0.0 1.5 1 1 0 1 1 1 0 Erp protein C-terminus TetR_C_5 PF08360.11 gi|330508366|ref|YP_004384794.1| - 0.081 13.1 0.0 0.16 12.2 0.0 1.7 1 1 0 1 1 1 0 QacR-like protein, C-terminal region ParD_antitoxin PF03693.14 gi|330508366|ref|YP_004384794.1| - 0.09 13.2 0.0 0.24 11.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Amidohydro_1 PF01979.20 gi|330508368|ref|YP_004384796.1| - 4.7e-30 105.1 0.0 7.2e-30 104.5 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|330508368|ref|YP_004384796.1| - 1.4e-12 47.9 3.6 4.5e-08 33.0 2.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.20 gi|330508368|ref|YP_004384796.1| - 0.041 14.2 0.0 0.11 12.8 0.0 1.7 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain polyprenyl_synt PF00348.17 gi|330508369|ref|YP_004384797.1| - 2.7e-65 220.0 0.0 3.2e-65 219.7 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B_2 PF12706.7 gi|330508370|ref|YP_004384798.1| - 1.3e-08 34.6 0.4 8.3e-08 32.0 0.1 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|330508370|ref|YP_004384798.1| - 2e-08 34.0 1.1 1.6e-07 31.1 0.1 2.4 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|330508370|ref|YP_004384798.1| - 3.9e-06 27.0 2.5 1.6e-05 25.0 2.3 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily FMN_dh PF01070.18 gi|330508371|ref|YP_004384799.1| - 2.3e-23 82.8 2.6 4.4e-13 49.0 1.3 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|330508371|ref|YP_004384799.1| - 0.00028 20.0 0.7 0.025 13.6 0.0 2.6 2 1 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|330508371|ref|YP_004384799.1| - 0.035 13.3 0.1 0.073 12.3 0.1 1.5 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Glu_synthase PF01645.17 gi|330508371|ref|YP_004384799.1| - 0.047 12.8 6.1 0.76 8.9 3.7 2.7 2 1 0 2 2 2 0 Conserved region in glutamate synthase Semialdhyde_dh PF01118.24 gi|330508371|ref|YP_004384799.1| - 0.12 12.8 0.0 0.28 11.6 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain AA_kinase PF00696.28 gi|330508372|ref|YP_004384800.1| - 4.2e-40 137.8 0.1 4.8e-40 137.7 0.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.26 gi|330508373|ref|YP_004384801.1| - 4.6e-21 74.8 0.3 4.6e-21 74.8 0.3 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|330508373|ref|YP_004384801.1| - 1.3e-11 44.7 1.4 2.8e-11 43.6 1.4 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|330508373|ref|YP_004384801.1| - 0.0042 16.6 0.2 0.01 15.4 0.1 1.7 2 0 0 2 2 2 1 Galactokinase galactose-binding signature Memo PF01875.17 gi|330508374|ref|YP_004384802.1| - 9.7e-64 215.1 0.0 1.1e-63 214.9 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|330508374|ref|YP_004384802.1| - 0.06 12.4 0.0 0.08 12.0 0.0 1.2 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.20 gi|330508375|ref|YP_004384803.1| - 5e-26 91.3 0.5 5.6e-15 55.2 0.4 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.6 gi|330508375|ref|YP_004384803.1| - 0.032 13.8 1.6 0.06 12.9 1.4 1.4 1 1 0 1 1 1 0 Periplasmic binding protein domain RNA_pol_Rpb6 PF01192.22 gi|330508376|ref|YP_004384804.1| - 1.7e-12 47.1 0.0 2.2e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|330508377|ref|YP_004384805.1| - 2.9e-28 97.9 0.7 3.2e-28 97.8 0.7 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|330508377|ref|YP_004384805.1| - 0.003 17.8 0.1 0.0034 17.6 0.1 1.1 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.19 gi|330508378|ref|YP_004384806.1| - 6.2e-33 113.9 0.4 7e-33 113.7 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|330508379|ref|YP_004384807.1| - 1.8e-11 44.4 0.1 2.4e-09 37.5 0.1 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|330508380|ref|YP_004384808.1| - 1.4e-13 50.6 0.4 1.8e-13 50.3 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|330508380|ref|YP_004384808.1| - 4.6e-08 33.8 0.1 1.9e-07 31.8 0.1 1.9 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HHH_9 PF17674.1 gi|330508380|ref|YP_004384808.1| - 0.097 13.6 0.0 0.22 12.4 0.0 1.6 1 0 0 1 1 1 0 HHH domain TctA PF01970.16 gi|330508381|ref|YP_004384809.1| - 8.8e-66 222.3 40.8 1.1e-65 222.0 40.8 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family SPRY PF00622.28 gi|330508382|ref|YP_004384810.1| - 0.12 12.6 0.2 3 8.0 0.1 2.2 2 0 0 2 2 2 0 SPRY domain NTP_transferase PF00483.23 gi|330508383|ref|YP_004384811.1| - 4.2e-35 121.5 0.0 5.4e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|330508383|ref|YP_004384811.1| - 3.3e-16 60.1 0.2 4.5e-16 59.6 0.2 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|330508383|ref|YP_004384811.1| - 3.3e-15 55.1 20.4 3e-07 29.9 1.3 4.4 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|330508383|ref|YP_004384811.1| - 3.9e-05 23.5 0.0 5.9e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|330508383|ref|YP_004384811.1| - 0.00096 18.8 21.6 0.0038 16.9 2.3 4.9 4 1 1 5 5 5 2 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|330508383|ref|YP_004384811.1| - 0.041 12.0 1.7 0.09 10.9 1.7 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) NAD_binding_10 PF13460.6 gi|330508383|ref|YP_004384811.1| - 0.053 13.4 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding DUF268 PF03269.14 gi|330508383|ref|YP_004384811.1| - 0.079 12.8 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Caenorhabditis protein of unknown function, DUF268 PepSY_2 PF13670.6 gi|330508383|ref|YP_004384811.1| - 0.086 12.8 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain Fucokinase PF07959.12 gi|330508383|ref|YP_004384811.1| - 0.14 11.1 0.6 1.3 7.8 0.2 2.1 1 1 1 2 2 2 0 L-fucokinase DegT_DnrJ_EryC1 PF01041.17 gi|330508384|ref|YP_004384812.1| - 2e-129 432.0 0.0 2.3e-129 431.8 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|330508384|ref|YP_004384812.1| - 1.9e-05 24.1 0.0 4.9e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|330508384|ref|YP_004384812.1| - 2.4e-05 23.5 0.0 3.8e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|330508384|ref|YP_004384812.1| - 0.0096 14.5 0.0 0.019 13.5 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DUF2795 PF11387.8 gi|330508384|ref|YP_004384812.1| - 0.05 13.8 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) Acetyltransf_9 PF13527.7 gi|330508384|ref|YP_004384812.1| - 0.14 12.2 0.1 0.35 11.0 0.1 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GFO_IDH_MocA PF01408.22 gi|330508385|ref|YP_004384813.1| - 1.2e-24 87.4 0.6 3.8e-24 85.8 0.1 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|330508385|ref|YP_004384813.1| - 9.2e-08 32.4 0.1 1.8e-07 31.5 0.1 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|330508385|ref|YP_004384813.1| - 9.4e-07 28.4 0.5 3.2e-06 26.6 0.0 2.1 2 1 1 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|330508385|ref|YP_004384813.1| - 0.0053 17.3 0.0 0.029 14.9 0.0 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.19 gi|330508385|ref|YP_004384813.1| - 0.0089 16.7 0.1 0.021 15.5 0.1 1.6 1 0 0 1 1 1 1 CoA binding domain IlvN PF07991.12 gi|330508385|ref|YP_004384813.1| - 0.011 15.3 0.1 0.02 14.5 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain OCD_Mu_crystall PF02423.15 gi|330508385|ref|YP_004384813.1| - 0.036 13.0 0.0 0.058 12.3 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Semialdhyde_dh PF01118.24 gi|330508385|ref|YP_004384813.1| - 0.083 13.3 0.1 0.57 10.6 0.0 2.3 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|330508385|ref|YP_004384813.1| - 0.085 13.3 0.1 0.22 11.9 0.0 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Hexapep PF00132.24 gi|330508386|ref|YP_004384814.1| - 1.1e-24 85.1 12.2 2.7e-08 33.2 0.1 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|330508386|ref|YP_004384814.1| - 2.1e-15 56.1 11.2 9.8e-07 28.4 1.3 3.5 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase Desulfoferrod_N PF06397.12 gi|330508386|ref|YP_004384814.1| - 0.017 14.8 0.1 0.054 13.1 0.1 1.9 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain DUF2613 PF11021.8 gi|330508386|ref|YP_004384814.1| - 0.089 12.9 1.1 0.16 12.1 1.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) zf-CSL PF05207.13 gi|330508386|ref|YP_004384814.1| - 0.17 11.6 0.8 0.42 10.4 0.8 1.6 1 0 0 1 1 1 0 CSL zinc finger UDPG_MGDP_dh_N PF03721.14 gi|330508387|ref|YP_004384815.1| - 8.6e-31 107.0 0.0 1.2e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|330508387|ref|YP_004384815.1| - 1.2e-17 63.9 0.0 1.8e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.15 gi|330508387|ref|YP_004384815.1| - 0.00017 21.8 0.0 0.00067 19.9 0.0 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|330508387|ref|YP_004384815.1| - 0.0043 17.0 0.0 0.012 15.5 0.0 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|330508387|ref|YP_004384815.1| - 0.0086 16.5 0.0 0.016 15.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FAD_binding_3 PF01494.19 gi|330508387|ref|YP_004384815.1| - 0.046 13.0 0.5 0.11 11.7 0.0 1.8 2 0 0 2 2 2 0 FAD binding domain DUF4147 PF13660.6 gi|330508387|ref|YP_004384815.1| - 0.049 13.2 0.0 0.077 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) TrkA_N PF02254.18 gi|330508387|ref|YP_004384815.1| - 0.05 13.9 0.1 0.12 12.6 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.23 gi|330508387|ref|YP_004384815.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Epimerase_2 PF02350.19 gi|330508388|ref|YP_004384816.1| - 1.4e-102 343.2 0.0 1.6e-102 343.0 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_1_4 PF13692.6 gi|330508389|ref|YP_004384817.1| - 1.4e-10 41.7 0.0 8.4e-10 39.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330508389|ref|YP_004384817.1| - 1.8e-10 41.0 0.1 1.9e-09 37.8 0.0 2.3 2 1 1 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|330508389|ref|YP_004384817.1| - 1.9e-06 28.0 0.0 0.00022 21.3 0.0 2.2 1 1 1 2 2 2 2 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|330508389|ref|YP_004384817.1| - 6.1e-06 26.8 0.0 3.2e-05 24.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|330508389|ref|YP_004384817.1| - 0.0051 16.4 0.0 0.015 14.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 DDE_Tnp_IS66 PF03050.14 gi|330508390|ref|YP_004384818.1| - 1.6e-06 27.8 0.6 2.7e-05 23.8 0.6 2.1 1 1 0 1 1 1 1 Transposase IS66 family Zn_ribbon_recom PF13408.6 gi|330508390|ref|YP_004384818.1| - 0.088 13.3 4.0 0.13 12.8 1.7 2.4 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|330508390|ref|YP_004384818.1| - 0.15 12.2 0.6 7.5 6.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|330508390|ref|YP_004384818.1| - 0.21 11.2 0.6 12 5.6 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|330508390|ref|YP_004384818.1| - 0.27 11.3 2.8 1.3 9.1 3.1 1.9 1 1 1 2 2 2 0 Double zinc ribbon YhfH PF14149.6 gi|330508390|ref|YP_004384818.1| - 0.66 10.0 2.5 7.3 6.7 0.3 2.6 2 0 0 2 2 2 0 YhfH-like protein TF_Zn_Ribbon PF08271.12 gi|330508390|ref|YP_004384818.1| - 6.2 6.4 5.5 77 2.9 5.5 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding DDE_Tnp_1 PF01609.21 gi|330508391|ref|YP_004384819.1| - 3.6e-12 46.4 0.0 1.5e-10 41.1 0.0 2.4 1 1 0 1 1 1 1 Transposase DDE domain SIS PF01380.22 gi|330508392|ref|YP_004384820.1| - 1.2e-42 144.9 0.6 1.7e-21 76.4 0.2 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|330508392|ref|YP_004384820.1| - 9.7e-21 74.4 0.0 1.7e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|330508392|ref|YP_004384820.1| - 8.5e-17 61.2 0.0 1.4e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|330508392|ref|YP_004384820.1| - 0.015 15.3 0.9 1.9 8.5 0.0 3.3 2 1 1 3 3 3 0 SIS domain NTP_transferase PF00483.23 gi|330508393|ref|YP_004384821.1| - 2.4e-35 122.3 0.0 3.4e-35 121.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|330508393|ref|YP_004384821.1| - 2e-17 62.1 12.7 2.2e-07 30.3 0.3 5.8 3 2 4 7 7 7 6 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|330508393|ref|YP_004384821.1| - 1.9e-14 54.3 0.0 2.8e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|330508393|ref|YP_004384821.1| - 1.3e-08 34.4 20.1 4.3e-06 26.4 0.3 5.6 5 1 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|330508393|ref|YP_004384821.1| - 0.0006 18.9 2.3 0.0065 15.5 0.8 2.1 1 1 1 2 2 2 1 L-fucokinase IspD PF01128.19 gi|330508393|ref|YP_004384821.1| - 0.016 14.9 0.0 0.037 13.8 0.0 1.6 1 1 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|330508393|ref|YP_004384821.1| - 0.14 10.2 0.4 0.21 9.7 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Glyco_trans_1_4 PF13692.6 gi|330508394|ref|YP_004384822.1| - 1.7e-14 54.4 0.0 2.7e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330508394|ref|YP_004384822.1| - 1.6e-12 47.8 0.1 2.6e-12 47.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|330508394|ref|YP_004384822.1| - 2.1e-10 40.4 0.0 4.4e-10 39.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|330508394|ref|YP_004384822.1| - 4.6e-08 33.7 0.0 7.5e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|330508394|ref|YP_004384822.1| - 8.2e-08 32.5 0.0 1.7e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|330508394|ref|YP_004384822.1| - 0.016 15.2 0.1 0.024 14.7 0.1 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|330508395|ref|YP_004384823.1| - 1.3e-24 86.7 0.0 1.9e-24 86.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330508395|ref|YP_004384823.1| - 4.8e-22 78.8 0.0 8.4e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330508395|ref|YP_004384823.1| - 1.4e-06 28.4 0.0 2.2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|330508395|ref|YP_004384823.1| - 0.00029 21.2 0.1 0.00055 20.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330508396|ref|YP_004384824.1| - 8.5e-22 78.0 0.0 2.4e-21 76.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|330508396|ref|YP_004384824.1| - 5.1e-20 71.7 0.0 8.3e-20 71.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|330508396|ref|YP_004384824.1| - 0.0015 18.8 0.0 0.0083 16.5 0.0 2.0 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330508396|ref|YP_004384824.1| - 0.0025 17.8 0.0 0.015 15.3 0.0 2.2 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|330508397|ref|YP_004384825.1| - 2.6e-28 98.9 0.0 4e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|330508397|ref|YP_004384825.1| - 3.3e-12 46.4 0.0 5.2e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|330508397|ref|YP_004384825.1| - 1.7e-11 44.5 0.0 7.5e-10 39.1 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 TPR_2 PF07719.17 gi|330508397|ref|YP_004384825.1| - 0.00014 21.7 0.5 0.00041 20.2 0.5 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat Glyco_tranf_2_4 PF13704.6 gi|330508397|ref|YP_004384825.1| - 0.0007 20.1 0.1 0.0014 19.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 TPR_6 PF13174.6 gi|330508397|ref|YP_004384825.1| - 0.0088 16.6 0.4 0.059 14.0 0.1 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330508397|ref|YP_004384825.1| - 0.017 15.6 0.1 0.036 14.6 0.1 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330508397|ref|YP_004384825.1| - 0.02 15.5 0.1 0.04 14.6 0.1 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330508397|ref|YP_004384825.1| - 0.021 14.8 0.1 0.065 13.3 0.1 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330508397|ref|YP_004384825.1| - 0.029 14.2 0.5 0.085 12.7 0.2 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330508397|ref|YP_004384825.1| - 0.1 12.3 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 TPR repeat TPR_14 PF13428.6 gi|330508397|ref|YP_004384825.1| - 0.13 13.1 0.1 0.37 11.7 0.1 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat Polysacc_synt PF01943.17 gi|330508398|ref|YP_004384826.1| - 2.9e-33 115.4 40.5 2.9e-33 115.4 40.5 2.8 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|330508398|ref|YP_004384826.1| - 1.5e-17 64.0 19.3 1.5e-17 64.0 19.3 4.4 2 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|330508398|ref|YP_004384826.1| - 2.4e-15 56.5 24.2 6.7e-15 55.1 24.2 1.7 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|330508398|ref|YP_004384826.1| - 1.6e-08 33.6 43.4 1.6e-08 33.6 43.4 1.7 1 1 1 2 2 2 1 Lipid II flippase MurJ dTDP_sugar_isom PF00908.17 gi|330508399|ref|YP_004384827.1| - 6.4e-13 48.7 0.0 1.4e-12 47.7 0.0 1.5 1 1 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_2 PF07883.11 gi|330508399|ref|YP_004384827.1| - 5.2e-05 22.9 0.1 9.5e-05 22.0 0.1 1.3 1 0 0 1 1 1 1 Cupin domain RmlD_sub_bind PF04321.17 gi|330508400|ref|YP_004384828.1| - 4.1e-71 239.4 0.0 4.9e-71 239.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|330508400|ref|YP_004384828.1| - 1.3e-24 87.0 0.0 2e-24 86.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|330508400|ref|YP_004384828.1| - 3.5e-16 59.5 0.1 2.2e-15 56.9 0.1 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|330508400|ref|YP_004384828.1| - 2.6e-11 43.2 0.1 6.8e-10 38.6 0.1 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|330508400|ref|YP_004384828.1| - 7.6e-11 41.5 0.1 2.7e-10 39.7 0.1 1.9 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|330508400|ref|YP_004384828.1| - 3.4e-10 39.5 0.0 2e-09 37.0 0.0 2.1 2 1 0 2 2 2 1 Male sterility protein DFP PF04127.15 gi|330508400|ref|YP_004384828.1| - 0.00021 21.2 0.1 0.0061 16.4 0.0 2.5 2 1 0 3 3 3 1 DNA / pantothenate metabolism flavoprotein GDP_Man_Dehyd PF16363.5 gi|330508401|ref|YP_004384829.1| - 9.3e-83 278.4 0.0 1.1e-82 278.1 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|330508401|ref|YP_004384829.1| - 7.1e-61 205.7 0.0 8.8e-61 205.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|330508401|ref|YP_004384829.1| - 4.2e-18 65.3 0.0 5.4e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|330508401|ref|YP_004384829.1| - 2.4e-17 63.0 0.0 3.6e-17 62.4 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|330508401|ref|YP_004384829.1| - 2.7e-13 49.7 0.0 3.1e-12 46.2 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|330508401|ref|YP_004384829.1| - 9.5e-10 38.1 0.1 2e-08 33.7 0.1 2.4 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|330508401|ref|YP_004384829.1| - 2.7e-05 23.7 0.0 7.9e-05 22.2 0.0 1.7 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|330508401|ref|YP_004384829.1| - 0.0087 16.0 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|330508401|ref|YP_004384829.1| - 0.027 14.7 0.0 0.047 14.0 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|330508401|ref|YP_004384829.1| - 0.066 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 KR domain NTP_transferase PF00483.23 gi|330508402|ref|YP_004384830.1| - 3.4e-50 171.0 0.0 4e-50 170.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|330508402|ref|YP_004384830.1| - 1.7e-07 31.7 0.0 2.5e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|330508402|ref|YP_004384830.1| - 0.0014 18.3 9.6 0.0047 16.6 0.2 3.9 3 1 1 4 4 4 1 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|330508402|ref|YP_004384830.1| - 0.0026 16.8 0.1 0.0034 16.4 0.1 1.1 1 0 0 1 1 1 1 L-fucokinase GGA_N-GAT PF18308.1 gi|330508402|ref|YP_004384830.1| - 0.14 11.8 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 GGA N-GAT domain DUF4954 PF16314.5 gi|330508402|ref|YP_004384830.1| - 0.21 9.7 1.1 0.71 7.9 1.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) HMGL-like PF00682.19 gi|330508403|ref|YP_004384831.1| - 1.4e-83 280.5 0.9 2e-83 280.0 0.9 1.2 1 0 0 1 1 1 1 HMGL-like Ribosomal_L50 PF10501.9 gi|330508403|ref|YP_004384831.1| - 0.003 17.7 0.6 0.97 9.6 0.0 3.0 3 0 0 3 3 3 2 Ribosomal subunit 39S MTHFR PF02219.17 gi|330508403|ref|YP_004384831.1| - 0.016 14.6 0.4 2.4 7.4 0.1 2.2 2 0 0 2 2 2 0 Methylenetetrahydrofolate reductase DUF1611_N PF17396.2 gi|330508403|ref|YP_004384831.1| - 0.05 13.8 0.2 0.17 12.2 0.2 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain GATase PF00117.28 gi|330508404|ref|YP_004384832.1| - 3e-16 59.8 0.0 3.9e-16 59.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|330508404|ref|YP_004384832.1| - 0.0003 20.6 1.0 0.0015 18.4 0.2 2.3 1 1 2 3 3 3 1 Peptidase C26 GATase_3 PF07685.14 gi|330508404|ref|YP_004384832.1| - 0.002 17.8 0.0 0.0025 17.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|330508404|ref|YP_004384832.1| - 0.014 15.3 0.0 0.023 14.5 0.0 1.5 2 0 0 2 2 2 0 SNO glutamine amidotransferase family GATase_5 PF13507.6 gi|330508404|ref|YP_004384832.1| - 0.15 11.1 0.0 1.2 8.1 0.0 2.1 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Diphthami_syn_2 PF01902.17 gi|330508405|ref|YP_004384833.1| - 9.4e-62 208.4 0.0 1.1e-61 208.2 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase GATase_3 PF07685.14 gi|330508406|ref|YP_004384834.1| - 1.7e-50 171.3 0.0 3.3e-50 170.4 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|330508406|ref|YP_004384834.1| - 1.1e-22 80.8 0.0 8.1e-22 78.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|330508406|ref|YP_004384834.1| - 3.6e-21 75.6 0.0 1e-20 74.1 0.0 1.7 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase PF00117.28 gi|330508406|ref|YP_004384834.1| - 0.00037 20.3 0.0 0.00068 19.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I MobB PF03205.14 gi|330508406|ref|YP_004384834.1| - 0.0006 19.7 0.1 0.0053 16.7 0.0 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B SNO PF01174.19 gi|330508406|ref|YP_004384834.1| - 0.0088 15.9 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.24 gi|330508406|ref|YP_004384834.1| - 0.022 14.6 0.1 8.1 6.2 0.0 2.3 2 0 0 2 2 2 0 DJ-1/PfpI family MeaB PF03308.16 gi|330508406|ref|YP_004384834.1| - 0.034 13.1 0.0 0.22 10.4 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|330508406|ref|YP_004384834.1| - 0.07 13.0 0.1 0.57 10.1 0.0 2.1 2 0 0 2 2 2 0 NTPase DUF1611 PF07755.11 gi|330508406|ref|YP_004384834.1| - 0.13 11.5 0.2 0.89 8.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain FMN_red PF03358.15 gi|330508407|ref|YP_004384835.1| - 3.4e-22 78.9 0.0 4e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|330508407|ref|YP_004384835.1| - 2.2e-09 37.3 0.0 2.8e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|330508407|ref|YP_004384835.1| - 0.14 12.4 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain IMS_C PF11799.8 gi|330508408|ref|YP_004384836.1| - 1.1e-15 58.4 0.1 2.1e-15 57.5 0.1 1.5 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS PF00817.20 gi|330508408|ref|YP_004384836.1| - 1e-10 41.8 0.0 2.1e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 impB/mucB/samB family IMS_HHH PF11798.8 gi|330508408|ref|YP_004384836.1| - 2.1e-06 27.7 0.1 5.9e-06 26.3 0.1 1.8 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|330508408|ref|YP_004384836.1| - 3.6e-05 24.3 0.1 9.4e-05 22.9 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|330508408|ref|YP_004384836.1| - 0.00015 22.0 0.0 0.00036 20.7 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.6 gi|330508408|ref|YP_004384836.1| - 0.0069 16.6 0.0 0.02 15.1 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) OrfB_IS605 PF01385.19 gi|330508409|ref|YP_004384837.1| - 1e-21 77.4 0.0 2.1e-21 76.4 0.0 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|330508409|ref|YP_004384837.1| - 1e-21 76.6 0.0 2.6e-21 75.3 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|330508409|ref|YP_004384837.1| - 2.5e-19 68.5 2.3 5.3e-19 67.4 2.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|330508409|ref|YP_004384837.1| - 0.0032 17.4 0.2 0.0057 16.7 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|330508409|ref|YP_004384837.1| - 0.064 12.7 0.6 0.83 9.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|330508409|ref|YP_004384837.1| - 0.082 12.6 0.1 2 8.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|330508409|ref|YP_004384837.1| - 0.1 12.1 0.3 2.8 7.5 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding RecR PF02132.15 gi|330508409|ref|YP_004384837.1| - 0.12 11.9 2.8 11 5.6 0.2 3.1 2 1 1 3 3 3 0 RecR protein zf-NADH-PPase PF09297.11 gi|330508409|ref|YP_004384837.1| - 0.2 11.3 0.7 0.42 10.3 0.7 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF3786 PF12654.7 gi|330508410|ref|YP_004384838.1| - 8.7e-34 116.6 0.0 1e-33 116.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3786) AI-2E_transport PF01594.16 gi|330508411|ref|YP_004384839.1| - 3.9e-42 144.6 46.1 4.5e-42 144.4 46.1 1.0 1 0 0 1 1 1 1 AI-2E family transporter EamA PF00892.20 gi|330508412|ref|YP_004384840.1| - 2.2e-48 163.9 46.9 5.2e-25 88.2 16.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family PUNUT PF16913.5 gi|330508412|ref|YP_004384840.1| - 0.34 10.1 22.0 0.024 13.9 11.5 2.4 1 1 0 2 2 2 0 Purine nucleobase transmembrane transport TMEM234 PF10639.9 gi|330508412|ref|YP_004384840.1| - 0.88 9.6 14.8 0.11 12.5 1.5 2.7 2 1 0 2 2 2 0 Putative transmembrane family 234 Hydrolase_4 PF12146.8 gi|330508413|ref|YP_004384841.1| - 2.3e-16 59.8 0.0 1.7e-15 56.9 0.0 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|330508413|ref|YP_004384841.1| - 6.4e-11 42.1 0.0 1.1e-05 25.1 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family BAAT_C PF08840.11 gi|330508413|ref|YP_004384841.1| - 1e-10 41.9 0.0 2.8e-05 24.1 0.0 2.2 2 0 0 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.18 gi|330508413|ref|YP_004384841.1| - 6e-10 39.1 0.0 5.1e-07 29.5 0.0 2.1 2 0 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_6 PF12697.7 gi|330508413|ref|YP_004384841.1| - 8.9e-09 36.3 0.0 1.3e-08 35.7 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|330508413|ref|YP_004384841.1| - 8.3e-05 22.4 0.0 0.00058 19.6 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 gi|330508413|ref|YP_004384841.1| - 0.00014 21.6 0.0 0.0035 17.1 0.0 2.2 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|330508413|ref|YP_004384841.1| - 0.014 15.2 0.0 0.98 9.2 0.0 2.3 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Abhydrolase_8 PF06259.12 gi|330508413|ref|YP_004384841.1| - 0.047 13.3 0.0 0.078 12.6 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase Abhydrolase_3 PF07859.13 gi|330508413|ref|YP_004384841.1| - 0.072 12.9 0.0 0.46 10.3 0.0 2.0 1 1 0 2 2 2 0 alpha/beta hydrolase fold EF-hand_6 PF13405.6 gi|330508413|ref|YP_004384841.1| - 0.15 12.1 0.0 2.1 8.5 0.0 2.4 2 0 0 2 2 2 0 EF-hand domain AXE1 PF05448.12 gi|330508413|ref|YP_004384841.1| - 0.15 10.7 0.0 0.24 10.1 0.0 1.3 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) EF-hand_5 PF13202.6 gi|330508413|ref|YP_004384841.1| - 0.17 11.4 0.0 4.7 6.9 0.0 2.3 2 0 0 2 2 2 0 EF hand HicB_lk_antitox PF15919.5 gi|330508414|ref|YP_004384842.1| - 3.3e-17 62.7 0.2 3.6e-17 62.6 0.2 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Sigma70_r1_1 PF03979.14 gi|330508414|ref|YP_004384842.1| - 0.0048 16.9 0.1 0.0065 16.5 0.1 1.2 1 0 0 1 1 1 1 Sigma-70 factor, region 1.1 AglB_L1 PF18079.1 gi|330508414|ref|YP_004384842.1| - 0.017 15.4 0.0 0.027 14.7 0.0 1.4 1 1 0 1 1 1 0 Archaeal glycosylation protein B long peripheral domain PulG PF11773.8 gi|330508414|ref|YP_004384842.1| - 0.022 14.6 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Type II secretory pathway pseudopilin Arm-DNA-bind_3 PF13356.6 gi|330508414|ref|YP_004384842.1| - 0.16 12.4 0.0 0.19 12.1 0.0 1.1 1 0 0 1 1 1 0 Arm DNA-binding domain Radical_SAM PF04055.21 gi|330508415|ref|YP_004384843.1| - 2e-18 67.4 0.1 8.7e-18 65.2 0.1 1.9 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330508415|ref|YP_004384843.1| - 4e-14 53.0 0.3 6.5e-14 52.4 0.3 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer2_4 PF13510.6 gi|330508415|ref|YP_004384843.1| - 2.8e-10 40.1 0.0 5.7e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_14 PF13394.6 gi|330508415|ref|YP_004384843.1| - 4.3e-10 39.7 0.3 9.4e-10 38.7 0.3 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer2_3 PF13085.6 gi|330508415|ref|YP_004384843.1| - 0.0012 18.8 0.1 0.0025 17.8 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain UBA_4 PF14555.6 gi|330508415|ref|YP_004384843.1| - 0.0046 16.7 0.0 0.0092 15.8 0.0 1.4 1 0 0 1 1 1 1 UBA-like domain SEO_C PF14577.6 gi|330508416|ref|YP_004384844.1| - 0.072 12.5 0.1 0.091 12.2 0.1 1.1 1 0 0 1 1 1 0 Sieve element occlusion C-terminus Phage_CI_repr PF07022.13 gi|330508416|ref|YP_004384844.1| - 0.15 12.2 0.0 0.33 11.1 0.0 1.6 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Sod_Fe_C PF02777.18 gi|330508417|ref|YP_004384845.1| - 8.6e-34 115.8 0.9 1.1e-33 115.5 0.2 1.5 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|330508417|ref|YP_004384845.1| - 1e-29 102.8 0.4 1.8e-29 102.0 0.4 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain FAM25 PF15825.5 gi|330508417|ref|YP_004384845.1| - 0.033 14.5 2.6 2.5 8.5 0.7 2.4 2 0 0 2 2 2 0 FAM25 family AhpC-TSA PF00578.21 gi|330508418|ref|YP_004384846.1| - 1.3e-30 105.9 0.0 1.8e-30 105.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|330508418|ref|YP_004384846.1| - 1.9e-13 50.0 1.1 3.5e-13 49.2 1.1 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|330508418|ref|YP_004384846.1| - 2.4e-12 46.8 0.0 5.9e-12 45.5 0.0 1.6 1 1 1 2 2 2 1 Redoxin FUR PF01475.19 gi|330508419|ref|YP_004384847.1| - 8.1e-31 106.7 0.0 1e-30 106.3 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.11 gi|330508419|ref|YP_004384847.1| - 0.032 13.6 0.1 0.053 12.9 0.1 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_11 PF08279.12 gi|330508419|ref|YP_004384847.1| - 0.078 12.9 0.2 0.25 11.3 0.0 1.9 2 1 1 3 3 3 0 HTH domain Prok-RING_4 PF14447.6 gi|330508419|ref|YP_004384847.1| - 0.11 12.4 0.4 1.3 9.0 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 Peptidase_M48 PF01435.18 gi|330508420|ref|YP_004384848.1| - 2.2e-36 125.5 0.0 3.3e-36 124.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|330508420|ref|YP_004384848.1| - 0.00054 19.2 0.0 0.00094 18.5 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 OsmC PF02566.19 gi|330508420|ref|YP_004384848.1| - 0.18 12.3 0.0 0.41 11.2 0.0 1.6 1 0 0 1 1 1 0 OsmC-like protein Rhomboid PF01694.22 gi|330508421|ref|YP_004384849.1| - 1.3e-36 125.9 16.3 1.3e-36 125.9 16.3 1.9 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|330508421|ref|YP_004384849.1| - 0.00072 20.1 3.5 0.0065 17.0 0.0 3.0 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) TPR_1 PF00515.28 gi|330508422|ref|YP_004384850.1| - 4.6e-44 146.5 5.2 1.7e-09 37.1 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330508422|ref|YP_004384850.1| - 3.7e-38 126.6 5.8 1.5e-07 31.0 0.0 5.3 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330508422|ref|YP_004384850.1| - 2e-36 124.4 11.9 3.5e-15 56.4 0.5 3.7 2 2 3 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330508422|ref|YP_004384850.1| - 2.9e-33 113.3 10.3 1.8e-08 33.9 0.0 5.5 2 2 4 6 6 6 5 TPR repeat TPR_8 PF13181.6 gi|330508422|ref|YP_004384850.1| - 3.8e-30 101.6 2.7 1.1e-06 28.3 0.0 5.9 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330508422|ref|YP_004384850.1| - 1.5e-22 79.9 15.2 2.9e-10 40.5 0.7 3.4 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330508422|ref|YP_004384850.1| - 1.9e-21 74.9 9.2 2.2e-05 24.9 0.3 5.2 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330508422|ref|YP_004384850.1| - 8e-20 70.9 7.4 1.6e-08 34.7 0.7 4.4 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330508422|ref|YP_004384850.1| - 1.1e-18 66.2 7.1 1.2e-05 25.3 0.0 5.9 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330508422|ref|YP_004384850.1| - 5.8e-17 61.6 8.2 3.2e-06 27.2 0.3 4.7 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330508422|ref|YP_004384850.1| - 4.9e-15 55.1 2.2 0.0035 17.9 0.1 5.3 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_4 PF07721.14 gi|330508422|ref|YP_004384850.1| - 2.6e-13 49.2 1.4 0.15 12.8 0.2 4.7 4 0 0 4 4 4 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330508422|ref|YP_004384850.1| - 1.6e-11 44.3 1.2 7.4e-08 32.5 0.1 3.0 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|330508422|ref|YP_004384850.1| - 1.1e-09 37.9 12.1 0.11 12.4 0.1 5.6 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330508422|ref|YP_004384850.1| - 1.2e-07 31.2 7.9 0.25 11.5 0.0 5.5 4 1 1 5 5 5 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330508422|ref|YP_004384850.1| - 3.9e-06 26.8 3.1 0.0046 17.0 0.0 4.4 3 1 2 5 5 5 1 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.17 gi|330508422|ref|YP_004384850.1| - 8.5e-06 26.3 1.2 0.017 15.6 0.0 3.1 1 1 3 4 4 4 2 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|330508422|ref|YP_004384850.1| - 1.4e-05 25.2 2.0 2.7 8.1 0.0 4.5 1 1 4 5 5 5 1 Domain of Unknown Function (DUF3856) SRP_TPR_like PF17004.5 gi|330508422|ref|YP_004384850.1| - 2.4e-05 24.3 0.0 8.1e-05 22.6 0.0 1.8 1 1 1 2 2 2 1 Putative TPR-like repeat TPR_3 PF07720.12 gi|330508422|ref|YP_004384850.1| - 6.4e-05 22.9 2.6 3.6 7.7 0.2 4.2 3 2 0 3 3 3 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|330508422|ref|YP_004384850.1| - 8.2e-05 22.9 0.3 2.1 8.7 0.0 3.4 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|330508422|ref|YP_004384850.1| - 0.0006 19.1 1.9 0.012 14.9 0.2 2.1 1 1 1 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|330508422|ref|YP_004384850.1| - 0.0066 15.4 1.0 2.3 7.0 0.0 2.9 1 1 2 3 3 3 1 NMDA receptor-regulated protein 1 Alkyl_sulf_dimr PF14863.6 gi|330508422|ref|YP_004384850.1| - 0.02 15.3 0.3 1.7 9.1 0.0 2.1 2 0 0 2 2 2 0 Alkyl sulfatase dimerisation DNA_pol_lambd_f PF10391.9 gi|330508422|ref|YP_004384850.1| - 0.023 14.5 0.4 9.7 6.1 0.0 3.5 4 0 0 4 4 4 0 Fingers domain of DNA polymerase lambda ChAPs PF09295.10 gi|330508422|ref|YP_004384850.1| - 0.028 13.4 0.0 0.97 8.4 0.0 2.1 1 1 1 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_21 PF09976.9 gi|330508422|ref|YP_004384850.1| - 0.036 13.8 2.2 5 6.8 0.1 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat-like domain PPTA PF01239.22 gi|330508422|ref|YP_004384850.1| - 0.058 13.2 0.2 15 5.5 0.0 3.0 3 0 0 3 3 3 0 Protein prenyltransferase alpha subunit repeat Wzy_C_2 PF11846.8 gi|330508422|ref|YP_004384850.1| - 0.5 10.3 3.4 4.7 7.1 0.5 3.0 1 1 2 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal SRP54 PF00448.22 gi|330508423|ref|YP_004384851.1| - 9.4e-72 240.8 0.1 1.4e-71 240.2 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|330508423|ref|YP_004384851.1| - 1.5e-10 41.1 0.9 4.4e-10 39.7 0.9 1.8 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|330508423|ref|YP_004384851.1| - 2.9e-05 23.9 0.2 5e-05 23.1 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|330508423|ref|YP_004384851.1| - 0.00016 22.1 0.0 0.00033 21.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|330508423|ref|YP_004384851.1| - 0.00064 20.2 0.0 0.0015 19.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|330508423|ref|YP_004384851.1| - 0.001 19.0 0.0 0.0023 17.9 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|330508423|ref|YP_004384851.1| - 0.0011 18.2 0.0 0.0018 17.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.17 gi|330508423|ref|YP_004384851.1| - 0.0013 18.5 0.1 0.019 14.7 0.0 2.4 2 1 0 2 2 2 1 Thymidylate kinase AAA_33 PF13671.6 gi|330508423|ref|YP_004384851.1| - 0.0017 18.5 0.0 0.0031 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|330508423|ref|YP_004384851.1| - 0.0057 17.0 0.4 0.044 14.2 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain ResIII PF04851.15 gi|330508423|ref|YP_004384851.1| - 0.014 15.5 0.1 0.028 14.4 0.1 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|330508423|ref|YP_004384851.1| - 0.016 14.8 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|330508423|ref|YP_004384851.1| - 0.039 13.0 0.4 1.1 8.3 0.0 2.2 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.6 gi|330508423|ref|YP_004384851.1| - 0.045 14.0 0.1 0.18 12.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|330508423|ref|YP_004384851.1| - 0.046 14.0 0.1 0.13 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|330508423|ref|YP_004384851.1| - 0.047 13.6 0.5 0.3 11.0 0.1 2.1 1 1 1 2 2 2 0 NTPase AAA_5 PF07728.14 gi|330508423|ref|YP_004384851.1| - 0.049 13.6 0.0 0.24 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Arf PF00025.21 gi|330508423|ref|YP_004384851.1| - 0.095 12.1 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family CbiA PF01656.23 gi|330508423|ref|YP_004384851.1| - 0.096 12.7 0.1 0.2 11.7 0.1 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|330508423|ref|YP_004384851.1| - 0.19 11.8 0.7 0.93 9.6 0.7 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase Prefoldin PF02996.17 gi|330508424|ref|YP_004384852.1| - 3.8e-22 78.5 3.6 5.3e-22 78.0 3.6 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|330508424|ref|YP_004384852.1| - 0.0052 16.7 6.5 0.011 15.6 1.8 2.1 2 0 0 2 2 2 1 Prefoldin subunit Snf7 PF03357.21 gi|330508424|ref|YP_004384852.1| - 0.032 13.8 2.1 3.6 7.2 0.2 2.1 2 0 0 2 2 2 0 Snf7 MCC-bdg_PDZ PF10506.9 gi|330508424|ref|YP_004384852.1| - 0.22 11.6 4.9 0.078 13.0 1.8 1.8 2 1 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Snapin_Pallidin PF14712.6 gi|330508424|ref|YP_004384852.1| - 0.39 11.2 3.4 0.2 12.1 1.1 1.7 2 1 0 2 2 2 0 Snapin/Pallidin Trimer_CC PF08954.11 gi|330508424|ref|YP_004384852.1| - 1.9 8.1 4.9 3.3 7.4 0.6 2.4 2 0 0 2 2 2 0 Trimerisation motif Nsp1_C PF05064.13 gi|330508424|ref|YP_004384852.1| - 6.6 6.6 7.1 3.1 7.6 1.1 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region Ribosomal_L18A PF01775.17 gi|330508425|ref|YP_004384853.1| - 3.4e-08 33.6 0.0 4.1e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|330508426|ref|YP_004384854.1| - 8.9e-66 221.0 0.3 1e-65 220.8 0.3 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|330508427|ref|YP_004384855.1| - 1.5e-12 47.6 0.1 1.9e-12 47.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e DUF167 PF02594.16 gi|330508427|ref|YP_004384855.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised ACR, YggU family COG1872 Asn_synthase PF00733.21 gi|330508428|ref|YP_004384856.1| - 0.00012 21.9 0.0 0.00048 19.9 0.0 1.8 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.13 gi|330508428|ref|YP_004384856.1| - 0.00044 19.8 0.0 0.00062 19.3 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|330508428|ref|YP_004384856.1| - 0.0081 15.7 0.0 0.017 14.6 0.0 1.6 1 1 0 1 1 1 1 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|330508428|ref|YP_004384856.1| - 0.018 13.8 0.0 0.026 13.3 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase dsDNA_bind PF01984.20 gi|330508429|ref|YP_004384857.1| - 1.1e-29 102.9 16.6 1.3e-29 102.7 16.6 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain 4HB_MCP_1 PF12729.7 gi|330508429|ref|YP_004384857.1| - 0.0014 18.2 3.1 0.0016 18.0 3.1 1.1 1 0 0 1 1 1 1 Four helix bundle sensory module for signal transduction Ribosomal_S19e PF01090.19 gi|330508430|ref|YP_004384858.1| - 1.9e-54 183.1 0.0 2.2e-54 182.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|330508430|ref|YP_004384858.1| - 0.024 14.5 0.0 0.36 10.7 0.0 2.1 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain GntR PF00392.21 gi|330508430|ref|YP_004384858.1| - 0.064 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|330508430|ref|YP_004384858.1| - 0.091 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|330508430|ref|YP_004384858.1| - 0.13 12.1 0.1 0.21 11.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family E1-E2_ATPase PF00122.20 gi|330508431|ref|YP_004384859.1| - 1.1e-51 174.9 2.8 1.1e-51 174.9 2.8 2.8 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|330508431|ref|YP_004384859.1| - 2.6e-51 173.9 6.3 2.6e-51 173.9 6.3 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|330508431|ref|YP_004384859.1| - 9.7e-25 88.1 0.9 4.8e-24 85.8 0.9 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|330508431|ref|YP_004384859.1| - 1.1e-24 86.4 0.0 2.4e-24 85.3 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|330508431|ref|YP_004384859.1| - 1.8e-17 62.8 0.2 4.6e-17 61.5 0.1 1.9 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|330508431|ref|YP_004384859.1| - 2.1e-06 27.7 0.5 0.00011 22.0 0.5 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|330508431|ref|YP_004384859.1| - 2e-05 25.1 0.1 5.5e-05 23.7 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Transposase_mut PF00872.18 gi|330508432|ref|YP_004384860.1| - 2.2e-105 352.7 1.9 2.6e-105 352.4 1.9 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|330508432|ref|YP_004384860.1| - 4.9e-08 33.3 0.1 1.3e-07 31.9 0.0 1.8 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.17 gi|330508432|ref|YP_004384860.1| - 0.016 14.9 0.2 0.041 13.6 0.2 1.7 1 1 0 1 1 1 0 Transposase DUF5499 PF17603.2 gi|330508432|ref|YP_004384860.1| - 0.4 11.3 4.9 3.1 8.5 0.1 3.7 3 2 1 4 4 4 0 Family of unknown function (DUF5499) Na_Pi_cotrans PF02690.15 gi|330508433|ref|YP_004384861.1| - 7.2e-57 191.4 24.4 2.1e-39 134.8 8.3 2.4 2 0 0 2 2 2 2 Na+/Pi-cotransporter PhoU PF01895.19 gi|330508433|ref|YP_004384861.1| - 0.00019 21.9 5.4 0.0039 17.6 3.0 2.5 2 0 0 2 2 2 1 PhoU domain DUF4116 PF13475.6 gi|330508433|ref|YP_004384861.1| - 0.16 11.7 0.0 0.4 10.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4116) DUF2108 PF09881.9 gi|330508433|ref|YP_004384861.1| - 2.9 7.9 8.7 0.51 10.3 0.9 3.4 2 1 1 3 3 3 0 Predicted membrane protein (DUF2108) SNF PF00209.18 gi|330508434|ref|YP_004384862.1| - 6e-68 229.8 35.2 1.9e-34 119.2 16.0 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family Usp PF00582.26 gi|330508435|ref|YP_004384863.1| - 3.6e-45 153.9 3.1 1.2e-25 90.6 0.2 2.1 2 0 0 2 2 2 2 Universal stress protein family RQC PF09382.10 gi|330508435|ref|YP_004384863.1| - 0.037 13.8 0.0 16 5.3 0.0 3.1 3 0 0 3 3 3 0 RQC domain GFD1 PF17331.2 gi|330508435|ref|YP_004384863.1| - 0.083 13.1 1.5 0.17 12.1 1.5 1.5 1 0 0 1 1 1 0 GFD1 mRNA transport factor OTCace_N PF02729.21 gi|330508436|ref|YP_004384864.1| - 5.2e-48 162.8 0.0 2.7e-47 160.5 0.0 1.9 1 1 1 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|330508436|ref|YP_004384864.1| - 6.2e-30 104.4 0.0 8.2e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|330508437|ref|YP_004384865.1| - 7.7e-34 115.8 1.4 1.1e-33 115.4 1.4 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|330508437|ref|YP_004384865.1| - 3.4e-16 58.9 0.8 6e-16 58.1 0.8 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain T2SSE PF00437.20 gi|330508437|ref|YP_004384865.1| - 0.024 13.7 0.1 0.029 13.4 0.1 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein FKBP_C PF00254.28 gi|330508438|ref|YP_004384866.1| - 1.7e-07 31.5 0.2 1.8e-05 25.0 0.1 2.4 2 1 0 2 2 2 2 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|330508438|ref|YP_004384866.1| - 9.9e-07 28.8 0.3 2.4e-06 27.5 0.2 1.7 2 0 0 2 2 2 1 FKBP26_C-terminal Tad PF13400.6 gi|330508439|ref|YP_004384867.1| - 0.012 15.9 0.2 0.017 15.4 0.2 1.2 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like Nitroreductase PF00881.24 gi|330508441|ref|YP_004384869.1| - 5.3e-09 36.4 0.0 0.0036 17.4 0.0 2.9 2 2 0 2 2 2 2 Nitroreductase family Transposase_20 PF02371.16 gi|330508442|ref|YP_004384870.1| - 2.9e-25 88.4 0.1 5.4e-25 87.5 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330508442|ref|YP_004384870.1| - 3.7e-21 75.6 0.0 6.6e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 Transposase Init_tRNA_PT PF04179.12 gi|330508442|ref|YP_004384870.1| - 0.036 14.4 1.0 0.081 13.2 0.1 2.0 2 0 0 2 2 2 0 Rit1 DUSP-like domain PDT PF00800.18 gi|330508443|ref|YP_004384871.1| - 4.2e-56 189.6 0.0 5.9e-56 189.2 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|330508443|ref|YP_004384871.1| - 3.4e-13 49.1 0.0 7.7e-13 48.0 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|330508443|ref|YP_004384871.1| - 0.0049 17.4 0.0 0.016 15.8 0.0 1.8 2 0 0 2 2 2 1 ACT domain PEP-utilizers PF00391.23 gi|330508443|ref|YP_004384871.1| - 0.071 12.8 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain HMG-CoA_red PF00368.18 gi|330508444|ref|YP_004384872.1| - 1.6e-111 372.9 5.6 1.9e-111 372.6 5.6 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Peptidase_M42 PF05343.14 gi|330508445|ref|YP_004384873.1| - 1.1e-103 346.3 0.6 1.3e-103 346.1 0.6 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|330508445|ref|YP_004384873.1| - 2e-09 37.4 0.1 3e-09 36.9 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 DUF1691 PF07950.11 gi|330508445|ref|YP_004384873.1| - 0.094 13.5 0.0 0.81 10.4 0.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1691) Peptidase_M28 PF04389.17 gi|330508445|ref|YP_004384873.1| - 0.14 11.8 0.0 1.1 9.0 0.0 2.2 2 1 0 2 2 2 0 Peptidase family M28 Usp PF00582.26 gi|330508446|ref|YP_004384874.1| - 4.8e-33 114.6 5.1 5.5e-33 114.5 5.1 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|330508446|ref|YP_004384874.1| - 0.0045 16.4 0.6 0.0077 15.7 0.4 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Toprim_3 PF13362.6 gi|330508446|ref|YP_004384874.1| - 0.042 14.2 1.4 0.61 10.5 0.1 2.4 1 1 1 2 2 2 0 Toprim domain DUF3606 PF12244.8 gi|330508446|ref|YP_004384874.1| - 0.074 13.0 0.3 0.19 11.7 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3606) GAD PF02938.14 gi|330508446|ref|YP_004384874.1| - 0.083 13.1 1.8 0.51 10.6 0.3 2.1 1 1 1 2 2 2 0 GAD domain AIRC PF00731.20 gi|330508447|ref|YP_004384875.1| - 1e-45 154.9 0.2 1.1e-45 154.8 0.2 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.6 gi|330508447|ref|YP_004384875.1| - 0.029 14.1 0.0 0.032 13.9 0.0 1.0 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase CM_2 PF01817.21 gi|330508448|ref|YP_004384876.1| - 1.7e-16 60.3 4.5 2e-16 60.1 4.5 1.0 1 0 0 1 1 1 1 Chorismate mutase type II GHMP_kinases_N PF00288.26 gi|330508449|ref|YP_004384877.1| - 5.6e-12 45.7 2.7 5.6e-12 45.7 2.7 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|330508449|ref|YP_004384877.1| - 0.001 19.4 0.7 0.0027 18.0 0.2 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal VHL PF01847.16 gi|330508450|ref|YP_004384878.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 VHL beta domain DAO PF01266.24 gi|330508451|ref|YP_004384879.1| - 9e-08 32.1 2.4 7e-05 22.6 0.0 2.6 1 1 2 3 3 3 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|330508451|ref|YP_004384879.1| - 9.8e-08 31.3 0.4 1.4e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 Tryptophan halogenase FAD_oxidored PF12831.7 gi|330508451|ref|YP_004384879.1| - 1.7e-07 31.0 3.6 1.1e-06 28.2 3.6 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|330508451|ref|YP_004384879.1| - 4.4e-06 25.7 1.1 7.6e-06 24.9 1.1 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|330508451|ref|YP_004384879.1| - 1.3e-05 24.6 0.3 0.00066 19.0 0.2 2.3 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|330508451|ref|YP_004384879.1| - 1.5e-05 24.3 0.0 3.5e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.22 gi|330508451|ref|YP_004384879.1| - 2.6e-05 23.5 0.9 2.6e-05 23.5 0.9 2.3 2 1 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|330508451|ref|YP_004384879.1| - 0.00023 20.4 1.1 0.00023 20.4 1.1 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|330508451|ref|YP_004384879.1| - 0.0012 18.2 0.7 0.0037 16.5 0.3 1.8 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|330508451|ref|YP_004384879.1| - 0.007 15.7 0.1 0.007 15.7 0.1 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|330508451|ref|YP_004384879.1| - 0.051 12.8 1.4 0.37 10.0 0.3 2.5 3 0 0 3 3 3 0 Thi4 family Pyr_redox_3 PF13738.6 gi|330508451|ref|YP_004384879.1| - 0.062 12.5 0.1 0.25 10.5 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Sp38 PF07354.12 gi|330508451|ref|YP_004384879.1| - 0.15 11.5 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Zona-pellucida-binding protein (Sp38) DUF1699 PF08004.11 gi|330508452|ref|YP_004384880.1| - 2.1e-57 192.4 0.0 2.4e-57 192.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) PYC_OADA PF02436.18 gi|330508453|ref|YP_004384881.1| - 1.4e-53 181.6 0.3 2.8e-53 180.6 0.3 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|330508453|ref|YP_004384881.1| - 6.4e-50 170.1 0.0 9e-50 169.7 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|330508453|ref|YP_004384881.1| - 8.6e-20 70.4 2.8 1.8e-19 69.3 2.8 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|330508453|ref|YP_004384881.1| - 1.4e-10 40.8 1.3 6.2e-05 22.7 0.0 2.9 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|330508453|ref|YP_004384881.1| - 0.00031 21.4 0.3 0.9 10.3 0.0 2.6 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|330508453|ref|YP_004384881.1| - 0.00063 19.0 0.3 0.68 9.1 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 gi|330508453|ref|YP_004384881.1| - 0.0063 16.3 0.1 0.33 10.7 0.0 2.5 1 1 1 2 2 2 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DUF2118 PF09891.9 gi|330508453|ref|YP_004384881.1| - 0.007 16.3 0.2 0.032 14.2 0.2 2.1 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) YqfD PF06898.11 gi|330508453|ref|YP_004384881.1| - 0.0077 15.1 0.1 0.0077 15.1 0.1 2.6 2 1 1 3 3 3 1 Putative stage IV sporulation protein YqfD GCV_H PF01597.19 gi|330508453|ref|YP_004384881.1| - 0.01 15.7 0.4 0.037 13.9 0.2 2.0 2 0 0 2 2 2 0 Glycine cleavage H-protein RnfC_N PF13375.6 gi|330508453|ref|YP_004384881.1| - 0.02 14.8 0.3 0.065 13.2 0.2 1.9 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain QRPTase_N PF02749.16 gi|330508453|ref|YP_004384881.1| - 0.072 13.2 0.1 19 5.4 0.0 2.7 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain ADH_zinc_N PF00107.26 gi|330508453|ref|YP_004384881.1| - 0.13 12.2 0.0 0.56 10.2 0.0 2.0 2 1 0 2 2 2 0 Zinc-binding dehydrogenase PYNP_C PF07831.13 gi|330508453|ref|YP_004384881.1| - 0.17 11.6 0.8 0.86 9.3 0.1 2.5 3 0 0 3 3 3 0 Pyrimidine nucleoside phosphorylase C-terminal domain AA_kinase PF00696.28 gi|330508454|ref|YP_004384882.1| - 3.1e-41 141.5 1.3 3.6e-41 141.3 1.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family NifU_N PF01592.16 gi|330508455|ref|YP_004384883.1| - 2e-46 157.3 0.0 2.5e-46 157.0 0.0 1.1 1 0 0 1 1 1 1 NifU-like N terminal domain TSCPD PF12637.7 gi|330508455|ref|YP_004384883.1| - 0.024 14.9 0.1 0.042 14.1 0.1 1.4 1 0 0 1 1 1 0 TSCPD domain DUF2306 PF10067.9 gi|330508456|ref|YP_004384884.1| - 3.9e-06 27.1 7.0 0.0035 17.6 0.3 2.2 1 1 1 2 2 2 2 Predicted membrane protein (DUF2306) Cytochrom_B561 PF03188.16 gi|330508456|ref|YP_004384884.1| - 1.1e-05 25.5 6.2 5.5e-05 23.3 6.2 2.0 1 1 0 1 1 1 1 Eukaryotic cytochrome b561 DUF4079 PF13301.6 gi|330508456|ref|YP_004384884.1| - 0.0002 21.5 11.6 0.002 18.3 3.1 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF4079) DUF2231 PF09990.9 gi|330508456|ref|YP_004384884.1| - 0.013 15.9 10.7 0.09 13.2 1.3 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) DUF4199 PF13858.6 gi|330508456|ref|YP_004384884.1| - 0.02 15.3 2.2 0.02 15.3 2.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) ResB PF05140.14 gi|330508456|ref|YP_004384884.1| - 0.18 10.5 1.3 0.25 10.0 1.3 1.1 1 0 0 1 1 1 0 ResB-like family Ferric_reduct PF01794.19 gi|330508456|ref|YP_004384884.1| - 0.25 11.4 8.4 0.32 11.1 0.7 2.6 2 1 1 3 3 3 0 Ferric reductase like transmembrane component GutM PF06923.11 gi|330508456|ref|YP_004384884.1| - 0.57 10.3 0.1 0.57 10.3 0.1 2.5 2 1 1 3 3 3 0 Glucitol operon activator protein (GutM) DUF420 PF04238.12 gi|330508456|ref|YP_004384884.1| - 0.69 10.2 6.3 3.6 7.9 5.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF420) DUF4405 PF14358.6 gi|330508456|ref|YP_004384884.1| - 0.89 10.1 14.4 0.51 10.9 1.5 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4405) Phage_holin_3_6 PF07332.11 gi|330508456|ref|YP_004384884.1| - 1.8 8.6 12.7 1.6 8.8 0.6 2.5 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III POR_N PF01855.19 gi|330508457|ref|YP_004384885.1| - 1.2e-48 165.8 0.1 1.7e-48 165.4 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|330508457|ref|YP_004384885.1| - 2.2e-30 106.0 0.0 4e-30 105.2 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|330508457|ref|YP_004384885.1| - 3.5e-07 30.0 1.1 6.8e-07 29.1 1.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|330508457|ref|YP_004384885.1| - 4.4e-05 23.7 0.0 0.00011 22.5 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_C PF02775.21 gi|330508458|ref|YP_004384886.1| - 1.9e-30 105.7 0.0 2.8e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|330508458|ref|YP_004384886.1| - 2e-06 27.8 0.1 3.9e-06 26.9 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Rubredoxin PF00301.20 gi|330508459|ref|YP_004384887.1| - 5.5e-26 90.3 2.9 6e-26 90.2 2.9 1.0 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|330508459|ref|YP_004384887.1| - 7e-05 22.8 0.1 9.6e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 PHD-finger TF_Zn_Ribbon PF08271.12 gi|330508459|ref|YP_004384887.1| - 0.0008 18.9 2.1 0.18 11.3 0.2 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|330508459|ref|YP_004384887.1| - 0.0049 16.7 3.1 0.59 10.1 0.7 2.1 2 0 0 2 2 2 2 SprT-like zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|330508459|ref|YP_004384887.1| - 0.0072 16.0 0.4 0.53 10.0 0.0 2.1 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein Zn-ribbon_8 PF09723.10 gi|330508459|ref|YP_004384887.1| - 0.016 15.4 2.7 0.13 12.4 2.7 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-RanBP PF00641.18 gi|330508459|ref|YP_004384887.1| - 0.02 14.2 4.3 0.038 13.3 0.5 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others A2L_zn_ribbon PF08792.10 gi|330508459|ref|YP_004384887.1| - 0.038 13.7 2.7 1.3 8.8 0.5 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain HypA PF01155.19 gi|330508459|ref|YP_004384887.1| - 0.12 12.4 0.1 0.14 12.2 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2_3 PF13878.6 gi|330508459|ref|YP_004384887.1| - 0.12 12.2 1.8 7.3 6.5 0.4 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-H2C2_2 PF13465.6 gi|330508459|ref|YP_004384887.1| - 0.21 12.1 1.3 18 6.0 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Nudix_N_2 PF14803.6 gi|330508459|ref|YP_004384887.1| - 0.29 11.1 4.5 1.3 9.0 0.5 2.2 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|330508459|ref|YP_004384887.1| - 0.29 11.1 1.6 5.8 6.9 1.6 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 gi|330508459|ref|YP_004384887.1| - 0.32 10.8 7.4 2.4 7.9 0.8 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf_UBZ PF18439.1 gi|330508459|ref|YP_004384887.1| - 0.37 10.4 2.9 2.4 7.8 0.2 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger ADK_lid PF05191.14 gi|330508459|ref|YP_004384887.1| - 0.41 10.7 4.0 3.1 7.8 3.9 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-C2H2 PF00096.26 gi|330508459|ref|YP_004384887.1| - 0.42 11.2 2.9 8 7.1 0.4 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.9 gi|330508459|ref|YP_004384887.1| - 0.92 9.6 6.2 9.6 6.4 1.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ferritin PF00210.24 gi|330508460|ref|YP_004384888.1| - 2.9e-38 131.0 2.3 3.6e-38 130.7 2.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF3906 PF13046.6 gi|330508460|ref|YP_004384888.1| - 0.02 15.0 0.2 0.12 12.5 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3906) Mad3_BUB1_I_2 PF17014.5 gi|330508460|ref|YP_004384888.1| - 0.073 13.2 0.2 0.1 12.7 0.2 1.3 1 0 0 1 1 1 0 Putative Mad3/BUB1 like region 1 protein Lipoprotein_15 PF03640.15 gi|330508461|ref|YP_004384889.1| - 2.1e-23 81.6 1.3 2.9e-12 45.9 0.0 2.1 2 0 0 2 2 2 2 Secreted repeat of unknown function TGT PF01702.18 gi|330508462|ref|YP_004384890.1| - 2.9e-113 378.6 0.0 4e-86 289.3 0.0 2.0 2 0 0 2 2 2 2 Queuine tRNA-ribosyltransferase Vut_1 PF02592.15 gi|330508463|ref|YP_004384891.1| - 2.9e-37 128.3 12.0 2.9e-37 128.3 12.0 1.4 2 0 0 2 2 2 1 Putative vitamin uptake transporter Methyltransf_25 PF13649.6 gi|330508464|ref|YP_004384892.1| - 2.6e-12 47.3 0.0 5.6e-12 46.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|330508464|ref|YP_004384892.1| - 1e-09 37.9 0.0 1.5e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.15 gi|330508464|ref|YP_004384892.1| - 5.6e-08 32.3 0.0 8.4e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.12 gi|330508464|ref|YP_004384892.1| - 2.5e-07 31.4 0.0 5.4e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330508464|ref|YP_004384892.1| - 5.3e-07 29.6 0.0 1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330508464|ref|YP_004384892.1| - 1.3e-06 28.2 0.0 2.1e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330508464|ref|YP_004384892.1| - 6.8e-06 26.7 0.0 1.3e-05 25.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|330508464|ref|YP_004384892.1| - 0.00018 20.7 0.0 0.00024 20.3 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase MTS PF05175.14 gi|330508464|ref|YP_004384892.1| - 0.00044 19.8 0.0 0.0008 19.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|330508464|ref|YP_004384892.1| - 0.0018 17.7 0.0 0.0028 17.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|330508464|ref|YP_004384892.1| - 0.002 18.1 0.0 0.0032 17.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|330508464|ref|YP_004384892.1| - 0.0039 16.6 0.4 0.0081 15.6 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|330508464|ref|YP_004384892.1| - 0.0042 16.7 0.0 0.0081 15.8 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|330508464|ref|YP_004384892.1| - 0.0057 16.4 0.0 0.017 14.9 0.0 1.6 1 1 0 1 1 1 1 Met-10+ like-protein DUF995 PF06191.12 gi|330508464|ref|YP_004384892.1| - 0.0063 16.2 0.2 0.012 15.3 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF995) tRNA_U5-meth_tr PF05958.11 gi|330508464|ref|YP_004384892.1| - 0.0067 15.5 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DUF938 PF06080.12 gi|330508464|ref|YP_004384892.1| - 0.0091 15.8 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) TehB PF03848.14 gi|330508464|ref|YP_004384892.1| - 0.01 15.2 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB CMAS PF02353.20 gi|330508464|ref|YP_004384892.1| - 0.012 15.0 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|330508464|ref|YP_004384892.1| - 0.016 14.6 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.19 gi|330508464|ref|YP_004384892.1| - 0.017 14.9 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|330508464|ref|YP_004384892.1| - 0.022 14.4 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.10 gi|330508464|ref|YP_004384892.1| - 0.033 13.8 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.6 gi|330508464|ref|YP_004384892.1| - 0.037 14.0 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF5541 PF17695.1 gi|330508464|ref|YP_004384892.1| - 0.04 14.3 0.0 0.075 13.5 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5541) Methyltr_RsmB-F PF01189.17 gi|330508464|ref|YP_004384892.1| - 0.13 11.8 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Gate PF07670.14 gi|330508465|ref|YP_004384893.1| - 3.8e-05 23.9 20.9 0.012 15.9 9.5 3.2 1 1 1 2 2 2 2 Nucleoside recognition DPM3 PF08285.11 gi|330508465|ref|YP_004384893.1| - 0.27 11.5 5.5 0.15 12.2 1.1 2.7 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Sperm_Ag_HE2 PF05324.13 gi|330508466|ref|YP_004384894.1| - 0.072 13.6 0.9 1.1 9.8 0.1 2.4 2 0 0 2 2 2 0 Sperm antigen HE2 Lyase_1 PF00206.20 gi|330508467|ref|YP_004384895.1| - 1.6e-49 169.0 0.1 2.3e-49 168.5 0.1 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|330508467|ref|YP_004384895.1| - 7.8e-21 74.4 2.4 1.1e-20 74.0 0.1 2.3 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus Ribosomal_S13 PF00416.22 gi|330508467|ref|YP_004384895.1| - 0.034 14.5 0.0 6.4 7.2 0.0 2.6 2 0 0 2 2 2 0 Ribosomal protein S13/S18 Lactamase_B PF00753.27 gi|330508468|ref|YP_004384896.1| - 2.5e-17 63.6 1.2 4.9e-16 59.3 0.5 2.5 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily ACT PF01842.25 gi|330508468|ref|YP_004384896.1| - 0.00089 19.0 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 ACT domain Lactamase_B_2 PF12706.7 gi|330508468|ref|YP_004384896.1| - 0.0014 18.2 0.1 0.0019 17.8 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|330508468|ref|YP_004384896.1| - 0.0019 18.1 0.0 0.0027 17.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Tachykinin PF02202.16 gi|330508468|ref|YP_004384896.1| - 0.11 12.4 0.1 0.4 10.7 0.0 2.0 2 0 0 2 2 2 0 Tachykinin family Carbam_trans_N PF02543.15 gi|330508468|ref|YP_004384896.1| - 0.22 11.2 0.0 0.27 10.8 0.0 1.1 1 0 0 1 1 1 0 Carbamoyltransferase N-terminus N6_Mtase PF02384.16 gi|330508469|ref|YP_004384897.1| - 0.00019 20.8 0.1 1.1 8.5 0.0 4.6 4 1 0 4 4 4 1 N-6 DNA Methylase Eco57I PF07669.11 gi|330508469|ref|YP_004384897.1| - 0.00054 20.4 0.0 0.005 17.3 0.0 2.4 2 0 0 2 2 2 1 Eco57I restriction-modification methylase Fic_N PF13784.6 gi|330508470|ref|YP_004384898.1| - 2.8e-26 91.4 0.0 7.6e-26 90.0 0.0 1.7 2 0 0 2 2 2 1 Fic/DOC family N-terminal Fic PF02661.18 gi|330508470|ref|YP_004384898.1| - 2.6e-17 63.5 0.0 6.2e-17 62.3 0.0 1.7 1 0 0 1 1 1 1 Fic/DOC family TrmB PF01978.19 gi|330508470|ref|YP_004384898.1| - 0.022 14.6 0.0 0.056 13.3 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|330508470|ref|YP_004384898.1| - 0.028 14.0 0.0 0.062 12.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|330508470|ref|YP_004384898.1| - 0.052 13.6 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix MarR PF01047.22 gi|330508470|ref|YP_004384898.1| - 0.1 12.6 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 MarR family Helicase_C PF00271.31 gi|330508471|ref|YP_004384899.1| - 9.9e-24 83.8 0.0 3e-23 82.3 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain PLDc_2 PF13091.6 gi|330508471|ref|YP_004384899.1| - 1.9e-20 73.1 0.0 1.3e-16 60.7 0.0 2.6 2 0 0 2 2 2 2 PLD-like domain SNF2_N PF00176.23 gi|330508471|ref|YP_004384899.1| - 2.6e-09 36.3 0.1 1.2e-06 27.6 0.0 2.3 1 1 1 2 2 2 2 SNF2 family N-terminal domain ResIII PF04851.15 gi|330508471|ref|YP_004384899.1| - 7.9e-06 26.0 0.0 0.007 16.4 0.0 2.7 1 1 1 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|330508471|ref|YP_004384899.1| - 0.00013 21.8 0.2 0.32 10.8 0.0 3.3 2 1 1 3 3 3 2 DEAD/DEAH box helicase Flavi_DEAD PF07652.14 gi|330508471|ref|YP_004384899.1| - 0.00092 19.2 0.1 0.058 13.4 0.1 2.4 1 1 0 1 1 1 1 Flavivirus DEAD domain Bac_DnaA PF00308.18 gi|330508471|ref|YP_004384899.1| - 0.002 18.0 0.4 0.0059 16.5 0.0 1.9 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_22 PF13401.6 gi|330508471|ref|YP_004384899.1| - 0.017 15.4 0.2 11 6.2 0.0 3.9 2 1 1 3 3 3 0 AAA domain PLDc PF00614.22 gi|330508471|ref|YP_004384899.1| - 0.025 14.8 0.0 0.059 13.6 0.0 1.6 1 0 0 1 1 1 0 Phospholipase D Active site motif IstB_IS21 PF01695.17 gi|330508471|ref|YP_004384899.1| - 0.027 14.2 0.2 0.78 9.4 0.1 2.8 2 1 0 2 2 2 0 IstB-like ATP binding protein DUF533 PF04391.12 gi|330508471|ref|YP_004384899.1| - 0.11 12.1 0.1 0.27 10.8 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF533) VHL_C PF17211.3 gi|330508471|ref|YP_004384899.1| - 0.11 12.5 1.0 0.31 11.1 1.0 1.8 1 0 0 1 1 1 0 VHL box domain AHSP PF09236.10 gi|330508471|ref|YP_004384899.1| - 0.13 12.7 0.4 0.94 10.0 0.3 2.6 3 0 0 3 3 2 0 Alpha-haemoglobin stabilising protein TruB_N PF01509.18 gi|330508472|ref|YP_004384900.1| - 1.4e-24 87.2 0.9 1.5e-15 57.8 0.1 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|330508472|ref|YP_004384900.1| - 1.2e-22 79.8 0.2 2.1e-22 79.0 0.2 1.4 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|330508472|ref|YP_004384900.1| - 3.6e-17 62.1 0.1 6.5e-17 61.3 0.1 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|330508472|ref|YP_004384900.1| - 1.8e-07 31.1 0.0 3.4e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain Cytidylate_kin2 PF13189.6 gi|330508473|ref|YP_004384901.1| - 1.4e-23 84.0 0.4 1.8e-12 47.7 0.8 2.0 1 1 1 2 2 2 2 Cytidylate kinase-like family AAA_18 PF13238.6 gi|330508473|ref|YP_004384901.1| - 1.2e-10 42.0 0.1 2e-10 41.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|330508473|ref|YP_004384901.1| - 2.8e-10 40.3 1.2 0.00041 20.2 0.5 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|330508473|ref|YP_004384901.1| - 9e-08 32.6 0.2 1.6e-07 31.8 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|330508473|ref|YP_004384901.1| - 3e-07 30.8 0.1 1.4e-06 28.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|330508473|ref|YP_004384901.1| - 0.00019 21.8 0.0 0.00026 21.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKI PF01202.22 gi|330508473|ref|YP_004384901.1| - 0.00084 19.5 0.1 1.4 9.0 0.1 2.2 2 0 0 2 2 2 2 Shikimate kinase ADK PF00406.22 gi|330508473|ref|YP_004384901.1| - 0.0011 19.1 0.1 0.0018 18.4 0.1 1.6 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|330508473|ref|YP_004384901.1| - 0.0015 18.7 0.5 0.028 14.6 0.5 2.2 1 1 0 1 1 1 1 AAA domain PRK PF00485.18 gi|330508473|ref|YP_004384901.1| - 0.017 14.9 0.1 0.035 13.9 0.0 1.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family CPT PF07931.12 gi|330508473|ref|YP_004384901.1| - 0.031 14.1 0.1 0.21 11.4 0.0 1.9 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein 6PGD PF00393.19 gi|330508473|ref|YP_004384901.1| - 0.066 12.6 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 6-phosphogluconate dehydrogenase, C-terminal domain Mitoc_L55 PF09776.9 gi|330508473|ref|YP_004384901.1| - 0.87 9.3 4.4 1.2 8.9 1.9 2.0 1 1 0 2 2 2 0 Mitochondrial ribosomal protein L55 EMC3_TMCO1 PF01956.16 gi|330508474|ref|YP_004384902.1| - 3.2e-41 140.9 8.2 4.1e-41 140.5 8.2 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like DUF3180 PF11377.8 gi|330508474|ref|YP_004384902.1| - 0.057 13.6 0.2 0.1 12.7 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3180) DUF4199 PF13858.6 gi|330508474|ref|YP_004384902.1| - 0.064 13.7 13.9 6.5 7.1 13.9 2.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) SecY PF00344.20 gi|330508475|ref|YP_004384903.1| - 1.6e-64 218.1 24.1 2.1e-64 217.7 24.1 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|330508475|ref|YP_004384903.1| - 3.1e-11 42.9 4.3 8.9e-11 41.5 4.3 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p Flocculin_t3 PF13928.6 gi|330508475|ref|YP_004384903.1| - 8.1 7.1 9.1 3.7 8.2 6.5 1.8 2 0 0 2 2 2 0 Flocculin type 3 repeat Ribosomal_L27A PF00828.19 gi|330508476|ref|YP_004384904.1| - 2.2e-17 63.9 2.1 5e-17 62.8 2.1 1.6 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|330508476|ref|YP_004384904.1| - 0.0041 16.5 0.1 0.0055 16.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L30 PF00327.20 gi|330508477|ref|YP_004384905.1| - 1.2e-15 57.1 0.1 2.4e-15 56.2 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 gi|330508478|ref|YP_004384906.1| - 1.2e-23 82.9 1.4 1.2e-23 82.9 1.4 2.0 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|330508478|ref|YP_004384906.1| - 2.6e-22 78.0 0.4 4.4e-22 77.3 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|330508479|ref|YP_004384907.1| - 9e-30 103.8 0.3 1e-19 71.1 0.0 2.3 2 0 0 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|330508479|ref|YP_004384907.1| - 0.044 14.1 0.0 0.064 13.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ATPgrasp_Ter PF15632.6 gi|330508479|ref|YP_004384907.1| - 0.14 11.9 0.0 0.28 10.9 0.0 1.4 2 0 0 2 2 2 0 ATP-grasp in the biosynthetic pathway with Ter operon Ribosomal_L19e PF01280.20 gi|330508480|ref|YP_004384908.1| - 4.2e-53 179.3 4.5 4.6e-53 179.2 4.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.18 gi|330508481|ref|YP_004384909.1| - 4.3e-33 114.0 0.2 5.2e-33 113.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|330508482|ref|YP_004384910.1| - 1.9e-31 108.6 4.6 5.4e-20 71.9 1.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.19 gi|330508483|ref|YP_004384911.1| - 8.2e-27 93.7 0.0 1.1e-26 93.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|330508484|ref|YP_004384912.1| - 5.5e-13 48.5 3.9 5.6e-13 48.4 3.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-P11 PF03854.14 gi|330508484|ref|YP_004384912.1| - 0.0045 16.6 0.9 0.0055 16.3 0.9 1.1 1 0 0 1 1 1 1 P-11 zinc finger DUF4428 PF14471.6 gi|330508484|ref|YP_004384912.1| - 0.01 15.7 1.0 0.56 10.2 1.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) zinc_ribbon_10 PF10058.9 gi|330508484|ref|YP_004384912.1| - 0.013 15.3 3.1 0.018 14.8 3.1 1.4 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein FYVE_2 PF02318.16 gi|330508484|ref|YP_004384912.1| - 0.033 14.4 0.5 0.033 14.4 0.5 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger DUF1451 PF07295.11 gi|330508484|ref|YP_004384912.1| - 0.073 13.1 0.3 0.074 13.1 0.3 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Ribosomal_L5_C PF00673.21 gi|330508485|ref|YP_004384913.1| - 2.2e-23 82.2 0.0 3.3e-23 81.7 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|330508485|ref|YP_004384913.1| - 9.1e-17 61.1 0.5 1.6e-16 60.4 0.5 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 FctA PF12892.7 gi|330508485|ref|YP_004384913.1| - 0.025 15.4 0.0 0.034 15.0 0.0 1.3 1 0 0 1 1 1 0 Spy0128-like isopeptide containing domain Ribosomal_S4e PF00900.20 gi|330508486|ref|YP_004384914.1| - 2e-16 59.7 0.0 4.2e-16 58.6 0.0 1.6 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|330508486|ref|YP_004384914.1| - 3.5e-11 43.0 2.5 5.5e-11 42.4 2.5 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.29 gi|330508486|ref|YP_004384914.1| - 3e-07 30.2 0.7 6.5e-07 29.1 0.7 1.6 1 0 0 1 1 1 1 KOW motif S4 PF01479.25 gi|330508486|ref|YP_004384914.1| - 0.00044 19.9 0.1 0.00076 19.2 0.1 1.4 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.6 gi|330508486|ref|YP_004384914.1| - 0.05 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 S4 domain Ribosomal_L26 PF16906.5 gi|330508487|ref|YP_004384915.1| - 2.6e-16 59.8 0.1 3.7e-16 59.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|330508487|ref|YP_004384915.1| - 4.4e-06 26.5 6.6 7.9e-06 25.7 6.6 1.6 1 1 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.19 gi|330508488|ref|YP_004384916.1| - 4.1e-38 130.2 1.5 4.6e-38 130.0 1.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|330508489|ref|YP_004384917.1| - 7.8e-26 90.0 3.3 9.5e-26 89.7 3.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|330508489|ref|YP_004384917.1| - 0.0032 17.8 0.2 0.014 15.7 0.0 2.0 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal Ricin_B_lectin PF00652.22 gi|330508489|ref|YP_004384917.1| - 0.085 13.1 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 Ricin-type beta-trefoil lectin domain zf-C3H1 PF10650.9 gi|330508489|ref|YP_004384917.1| - 0.31 10.8 2.1 0.63 9.8 2.1 1.4 1 0 0 1 1 1 0 Putative zinc-finger domain UPF0086 PF01868.16 gi|330508490|ref|YP_004384918.1| - 1.1e-21 76.6 0.0 1.2e-21 76.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|330508491|ref|YP_004384919.1| - 3.3e-18 65.4 0.5 3.8e-18 65.2 0.5 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein MRP-L47 PF06984.13 gi|330508491|ref|YP_004384919.1| - 0.0089 16.1 0.2 0.032 14.4 0.2 1.9 1 1 0 1 1 1 1 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) Fer4_14 PF13394.6 gi|330508491|ref|YP_004384919.1| - 0.063 13.4 0.0 0.069 13.3 0.0 1.0 1 0 0 1 1 1 0 4Fe-4S single cluster domain Toxin_36 PF10550.9 gi|330508491|ref|YP_004384919.1| - 0.49 11.9 3.3 0.88 11.1 0.5 2.2 2 0 0 2 2 2 0 Conantokin-G mollusc-toxin Ribosomal_S3_C PF00189.20 gi|330508492|ref|YP_004384920.1| - 1.2e-21 77.0 0.2 2e-21 76.3 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|330508492|ref|YP_004384920.1| - 1.7e-14 53.3 0.0 3e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|330508492|ref|YP_004384920.1| - 0.059 13.2 1.4 0.1 12.4 0.2 2.0 3 0 0 3 3 3 0 KH domain Ribosomal_L22 PF00237.19 gi|330508493|ref|YP_004384921.1| - 1.6e-26 92.6 0.0 1.9e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|330508494|ref|YP_004384922.1| - 7.7e-26 89.8 0.2 1.2e-25 89.2 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.21 gi|330508494|ref|YP_004384922.1| - 0.085 11.9 0.0 0.091 11.8 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Myb_DNA-bind_7 PF15963.5 gi|330508494|ref|YP_004384922.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Myb DNA-binding like Ribosomal_L2_C PF03947.18 gi|330508495|ref|YP_004384923.1| - 1.8e-45 154.2 0.4 1e-44 151.7 0.3 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|330508495|ref|YP_004384923.1| - 1.1e-14 54.1 0.0 3.1e-14 52.7 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|330508496|ref|YP_004384924.1| - 6.6e-17 61.7 1.5 2.2e-16 60.0 1.5 1.7 1 1 0 1 1 1 1 Ribosomal protein L23 SapB_1 PF05184.15 gi|330508496|ref|YP_004384924.1| - 0.0065 16.5 1.2 0.13 12.3 0.2 2.3 1 1 1 2 2 2 2 Saposin-like type B, region 1 DUF3804 PF12707.7 gi|330508496|ref|YP_004384924.1| - 0.01 15.5 0.0 0.011 15.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3804) HNF-1_N PF04814.13 gi|330508496|ref|YP_004384924.1| - 0.069 13.8 0.0 0.076 13.6 0.0 1.1 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus Ribosomal_L4 PF00573.22 gi|330508497|ref|YP_004384925.1| - 9.7e-46 155.9 0.5 1.1e-45 155.7 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|330508498|ref|YP_004384926.1| - 9.2e-91 304.6 0.0 6.9e-90 301.7 0.0 1.9 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|330508499|ref|YP_004384927.1| - 1.2e-55 189.0 0.0 1.5e-55 188.8 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|330508499|ref|YP_004384927.1| - 0.00066 19.9 0.0 1.4 9.0 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family PIF1 PF05970.14 gi|330508501|ref|YP_004384929.1| - 0.027 13.6 0.0 0.037 13.2 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase OrfB_Zn_ribbon PF07282.11 gi|330508503|ref|YP_004384931.1| - 3.2e-22 78.2 0.1 8.4e-22 76.9 0.1 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330508503|ref|YP_004384931.1| - 1.8e-21 76.6 0.0 3.9e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|330508503|ref|YP_004384931.1| - 3.9e-18 64.7 2.9 9.6e-18 63.4 2.9 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|330508503|ref|YP_004384931.1| - 0.0016 18.4 0.3 0.0027 17.7 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|330508503|ref|YP_004384931.1| - 0.061 12.8 0.5 0.47 10.0 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|330508503|ref|YP_004384931.1| - 0.12 12.1 0.8 0.2 11.3 0.8 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain C1_1 PF00130.22 gi|330508503|ref|YP_004384931.1| - 0.18 11.7 0.3 0.18 11.7 0.3 2.0 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.6 gi|330508503|ref|YP_004384931.1| - 0.23 10.9 0.9 1.2 8.6 0.9 2.0 1 1 0 1 1 1 0 zinc-ribbon domain RecR PF02132.15 gi|330508503|ref|YP_004384931.1| - 0.45 10.1 4.9 5.9 6.6 0.1 2.8 2 1 1 3 3 3 0 RecR protein MatE PF01554.18 gi|330508504|ref|YP_004384932.1| - 1.9e-54 183.7 44.6 2.1e-32 112.0 13.8 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|330508504|ref|YP_004384932.1| - 1.7e-12 47.6 10.3 1.7e-12 47.6 10.3 5.7 2 1 4 6 6 6 1 Polysaccharide biosynthesis C-terminal domain COX7C PF02935.16 gi|330508504|ref|YP_004384932.1| - 2.2 8.6 6.8 1.2 9.4 0.2 3.1 2 1 1 3 3 3 0 Cytochrome c oxidase subunit VIIc UvrB_inter PF17757.1 gi|330508505|ref|YP_004384933.1| - 9.6e-29 99.4 0.4 2.2e-28 98.2 0.4 1.7 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|330508505|ref|YP_004384933.1| - 3.8e-22 77.9 1.6 9.1e-22 76.6 1.6 1.7 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|330508505|ref|YP_004384933.1| - 1.6e-15 57.4 0.2 5.4e-15 55.7 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|330508505|ref|YP_004384933.1| - 1.7e-13 50.9 0.0 3.8e-12 46.5 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|330508505|ref|YP_004384933.1| - 1.3e-06 27.9 7.0 4.8e-06 26.1 7.0 2.0 1 0 0 1 1 1 1 UvrB/uvrC motif DEAD PF00270.29 gi|330508505|ref|YP_004384933.1| - 1.7e-05 24.7 0.0 0.00069 19.4 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|330508505|ref|YP_004384933.1| - 0.0095 16.2 0.5 0.073 13.3 0.0 2.8 4 0 0 4 4 4 1 AAA domain AAA_19 PF13245.6 gi|330508505|ref|YP_004384933.1| - 0.015 15.6 0.4 3.3 8.0 0.1 3.1 3 0 0 3 3 3 0 AAA domain SWI2_SNF2 PF18766.1 gi|330508505|ref|YP_004384933.1| - 0.021 14.5 0.1 0.2 11.3 0.0 2.5 3 0 0 3 3 3 0 SWI2/SNF2 ATPase AAA_33 PF13671.6 gi|330508505|ref|YP_004384933.1| - 0.025 14.7 0.1 0.22 11.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain NIBRIN_BRCT_II PF16508.5 gi|330508505|ref|YP_004384933.1| - 0.047 14.0 0.1 0.2 12.0 0.1 2.2 2 0 0 2 2 2 0 Second BRCT domain on Nijmegen syndrome breakage protein AAA_30 PF13604.6 gi|330508505|ref|YP_004384933.1| - 0.068 12.9 0.0 0.36 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain Kinesin PF00225.23 gi|330508505|ref|YP_004384933.1| - 0.073 12.0 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain DUF3969 PF13108.6 gi|330508505|ref|YP_004384933.1| - 0.11 12.5 0.0 1.6 8.8 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3969) FRD2 PF03197.13 gi|330508507|ref|YP_004384935.1| - 0.19 12.1 0.2 8.8 6.7 0.0 2.2 2 0 0 2 2 2 0 Bacteriophage FRD2 protein PIG-P PF08510.12 gi|330508507|ref|YP_004384935.1| - 1.8 8.5 6.5 18 5.3 6.6 2.2 1 1 0 1 1 1 0 PIG-P DUF1673 PF07895.11 gi|330508507|ref|YP_004384935.1| - 2.8 7.6 7.9 0.66 9.7 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1673) Nudix_N_2 PF14803.6 gi|330508508|ref|YP_004384936.1| - 0.00051 19.9 3.6 0.00066 19.5 2.2 1.9 2 0 0 2 2 1 1 Nudix N-terminal RNA_POL_M_15KD PF02150.16 gi|330508508|ref|YP_004384936.1| - 0.0016 18.3 0.1 0.0039 17.0 0.1 1.6 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|330508508|ref|YP_004384936.1| - 0.0019 17.6 1.7 0.071 12.5 0.2 2.4 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|330508508|ref|YP_004384936.1| - 0.0034 17.4 0.3 0.0052 16.8 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|330508508|ref|YP_004384936.1| - 0.019 14.9 2.2 0.79 9.7 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|330508508|ref|YP_004384936.1| - 0.019 14.5 1.7 0.038 13.5 1.7 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|330508508|ref|YP_004384936.1| - 0.026 14.2 1.0 0.22 11.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|330508508|ref|YP_004384936.1| - 0.03 14.7 0.1 0.063 13.7 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|330508508|ref|YP_004384936.1| - 0.06 13.3 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain eIF-5_eIF-2B PF01873.17 gi|330508508|ref|YP_004384936.1| - 0.066 13.1 0.5 0.27 11.1 0.5 1.9 2 0 0 2 2 2 0 Domain found in IF2B/IF5 zf-RING_7 PF02591.15 gi|330508508|ref|YP_004384936.1| - 0.077 13.2 1.5 1.9 8.7 0.1 2.8 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|330508508|ref|YP_004384936.1| - 0.08 13.1 1.4 0.21 11.7 1.4 1.7 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|330508508|ref|YP_004384936.1| - 0.12 12.5 0.8 7.6 6.7 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-IS66 PF13005.7 gi|330508508|ref|YP_004384936.1| - 0.16 12.4 2.4 16 6.0 0.1 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Prok-RING_1 PF14446.6 gi|330508508|ref|YP_004384936.1| - 0.21 11.5 5.8 5.2 7.1 5.8 2.2 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.11 gi|330508508|ref|YP_004384936.1| - 0.27 10.9 3.4 1.8 8.3 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CpXC PF14353.6 gi|330508508|ref|YP_004384936.1| - 0.34 11.0 1.8 6.5 6.8 0.1 2.8 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_4 PF13717.6 gi|330508508|ref|YP_004384936.1| - 0.56 10.2 2.4 9.2 6.3 2.4 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|330508508|ref|YP_004384936.1| - 0.61 9.9 4.1 3.9 7.3 4.0 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|330508508|ref|YP_004384936.1| - 1.1 9.1 3.0 13 5.6 3.1 2.3 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|330508509|ref|YP_004384937.1| - 4.7e-18 64.9 0.5 1.2e-17 63.6 0.5 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330508509|ref|YP_004384937.1| - 2.5e-11 43.9 0.1 4.1e-11 43.2 0.1 1.3 1 0 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|330508509|ref|YP_004384937.1| - 1.9e-05 24.9 0.3 4.3e-05 23.7 0.3 1.6 1 0 0 1 1 1 1 C1 domain zf-Mss51 PF13824.6 gi|330508509|ref|YP_004384937.1| - 0.0071 16.4 2.4 0.18 11.9 2.4 2.3 1 1 0 1 1 1 1 Zinc-finger of mitochondrial splicing suppressor 51 DZR PF12773.7 gi|330508509|ref|YP_004384937.1| - 0.059 13.4 1.0 0.059 13.4 1.0 1.8 2 0 0 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|330508509|ref|YP_004384937.1| - 0.092 12.8 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Anti-TRAP PF15777.5 gi|330508509|ref|YP_004384937.1| - 0.11 12.5 0.8 0.29 11.1 0.8 1.8 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Auto_anti-p27 PF06677.12 gi|330508509|ref|YP_004384937.1| - 0.3 11.3 2.0 0.6 10.3 2.0 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf_UBZ PF18439.1 gi|330508509|ref|YP_004384937.1| - 0.3 10.7 1.5 3.8 7.2 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger PCMT PF01135.19 gi|330508510|ref|YP_004384938.1| - 5.1e-67 225.7 0.0 6.1e-67 225.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|330508510|ref|YP_004384938.1| - 5.6e-08 32.7 0.0 7.7e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330508510|ref|YP_004384938.1| - 1e-05 26.1 0.0 2e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|330508510|ref|YP_004384938.1| - 2e-05 24.4 0.0 2.9e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Ubie_methyltran PF01209.18 gi|330508510|ref|YP_004384938.1| - 0.00064 19.1 0.0 0.00077 18.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|330508510|ref|YP_004384938.1| - 0.0041 17.7 0.0 0.0088 16.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|330508510|ref|YP_004384938.1| - 0.0098 15.0 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin CMAS PF02353.20 gi|330508510|ref|YP_004384938.1| - 0.019 14.3 0.0 0.026 13.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.17 gi|330508510|ref|YP_004384938.1| - 0.02 14.0 0.0 0.027 13.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase RrnaAD PF00398.20 gi|330508510|ref|YP_004384938.1| - 0.031 13.4 0.0 0.041 12.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|330508510|ref|YP_004384938.1| - 0.034 13.7 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|330508510|ref|YP_004384938.1| - 0.063 12.9 0.0 0.086 12.5 0.0 1.1 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_2 PF00891.18 gi|330508510|ref|YP_004384938.1| - 0.074 12.3 0.1 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 O-methyltransferase domain DUF938 PF06080.12 gi|330508510|ref|YP_004384938.1| - 0.099 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_4 PF02390.17 gi|330508510|ref|YP_004384938.1| - 0.25 10.8 0.0 0.39 10.2 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase iPGM_N PF06415.13 gi|330508511|ref|YP_004384939.1| - 3.5e-84 281.6 0.0 4.6e-84 281.2 0.0 1.1 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|330508511|ref|YP_004384939.1| - 5.5e-83 278.1 0.0 6.3e-83 277.9 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|330508511|ref|YP_004384939.1| - 0.00016 21.4 0.0 0.00039 20.1 0.0 1.6 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|330508511|ref|YP_004384939.1| - 0.012 15.7 0.0 0.032 14.3 0.0 1.7 1 0 0 1 1 1 0 PglZ domain Peptidase_M20 PF01546.28 gi|330508512|ref|YP_004384940.1| - 4e-37 127.9 0.0 5e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|330508512|ref|YP_004384940.1| - 1.7e-17 63.3 0.0 5.2e-17 61.7 0.0 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|330508512|ref|YP_004384940.1| - 9.4e-06 25.4 0.0 2.5e-05 24.0 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|330508512|ref|YP_004384940.1| - 0.00087 18.4 0.0 0.035 13.1 0.0 2.3 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase MobB PF03205.14 gi|330508513|ref|YP_004384941.1| - 5.6e-17 61.9 0.2 6.7e-17 61.6 0.2 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|330508513|ref|YP_004384941.1| - 0.0041 17.7 0.2 0.0054 17.3 0.2 1.4 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|330508513|ref|YP_004384941.1| - 0.0043 16.4 0.6 0.0082 15.5 0.6 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_28 PF13521.6 gi|330508513|ref|YP_004384941.1| - 0.0062 16.8 0.4 0.0089 16.3 0.4 1.4 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|330508513|ref|YP_004384941.1| - 0.0092 16.1 0.4 0.011 15.8 0.4 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|330508513|ref|YP_004384941.1| - 0.011 15.8 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|330508513|ref|YP_004384941.1| - 0.013 15.9 0.1 0.017 15.5 0.1 1.3 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|330508513|ref|YP_004384941.1| - 0.018 15.4 0.0 0.062 13.7 0.0 1.8 2 0 0 2 2 2 0 RNA helicase AAA_22 PF13401.6 gi|330508513|ref|YP_004384941.1| - 0.027 14.7 0.2 0.036 14.4 0.2 1.4 1 1 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|330508513|ref|YP_004384941.1| - 0.032 14.3 0.1 0.046 13.8 0.1 1.2 1 0 0 1 1 1 0 Dynamin family PduV-EutP PF10662.9 gi|330508513|ref|YP_004384941.1| - 0.04 13.6 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 gi|330508513|ref|YP_004384941.1| - 0.048 14.2 0.0 0.059 13.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter GTP_EFTU PF00009.27 gi|330508513|ref|YP_004384941.1| - 0.055 13.0 0.3 0.08 12.5 0.3 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA PF00004.29 gi|330508513|ref|YP_004384941.1| - 0.099 13.1 0.8 0.2 12.1 0.8 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Roc PF08477.13 gi|330508513|ref|YP_004384941.1| - 0.11 12.7 0.1 0.17 12.1 0.1 1.3 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_26 PF13500.6 gi|330508513|ref|YP_004384941.1| - 0.13 12.1 0.2 0.19 11.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|330508513|ref|YP_004384941.1| - 0.13 11.8 0.1 0.21 11.2 0.1 1.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|330508513|ref|YP_004384941.1| - 0.14 12.3 0.4 0.17 12.0 0.4 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF463 PF04317.12 gi|330508513|ref|YP_004384941.1| - 0.14 11.0 0.1 0.21 10.5 0.1 1.2 1 0 0 1 1 1 0 YcjX-like family, DUF463 SBP_bac_3 PF00497.20 gi|330508514|ref|YP_004384942.1| - 2.8e-19 69.4 0.1 4.3e-19 68.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 dCache_1 PF02743.18 gi|330508514|ref|YP_004384942.1| - 6.4e-06 26.1 0.0 1.4e-05 25.0 0.0 1.8 1 1 0 1 1 1 1 Cache domain Peripla_BP_6 PF13458.6 gi|330508515|ref|YP_004384943.1| - 1.9e-49 169.2 0.0 2.2e-49 169.0 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|330508515|ref|YP_004384943.1| - 2.4e-26 92.7 0.0 3.3e-26 92.2 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|330508515|ref|YP_004384943.1| - 2.5e-17 62.9 0.0 2.4e-10 40.0 0.1 2.8 2 1 0 2 2 2 2 Periplasmic binding protein domain LppC PF04348.13 gi|330508515|ref|YP_004384943.1| - 0.0015 17.4 0.0 0.0023 16.8 0.0 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein Sulfatase PF00884.23 gi|330508516|ref|YP_004384944.1| - 4.5e-91 305.4 0.1 6.3e-91 305.0 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|330508516|ref|YP_004384944.1| - 1.2e-05 25.0 1.1 0.00038 20.2 1.1 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Laminin_G_3 PF13385.6 gi|330508516|ref|YP_004384944.1| - 0.0009 19.4 0.0 0.0021 18.2 0.0 1.6 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily DUF4994 PF16385.5 gi|330508516|ref|YP_004384944.1| - 0.0045 16.9 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF4976 PF16347.5 gi|330508516|ref|YP_004384944.1| - 0.0094 16.2 0.2 0.022 15.0 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) DUF229 PF02995.17 gi|330508516|ref|YP_004384944.1| - 0.071 11.7 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Radical_SAM PF04055.21 gi|330508517|ref|YP_004384945.1| - 1.5e-14 54.7 0.0 2.5e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SEC-C PF02810.15 gi|330508517|ref|YP_004384945.1| - 5.2e-11 42.2 7.0 1.4e-10 40.9 7.0 1.8 1 0 0 1 1 1 1 SEC-C motif SPASM PF13186.6 gi|330508517|ref|YP_004384945.1| - 6.2e-08 33.1 0.2 1.5e-07 31.8 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|330508517|ref|YP_004384945.1| - 0.00019 21.7 0.0 0.00036 20.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330508517|ref|YP_004384945.1| - 0.00097 19.3 0.0 0.0018 18.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Glyoxalase PF00903.25 gi|330508518|ref|YP_004384946.1| - 2.1e-10 40.9 0.0 5.8e-10 39.4 0.0 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|330508518|ref|YP_004384946.1| - 5.7e-07 30.3 0.0 1.4e-06 29.0 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|330508518|ref|YP_004384946.1| - 0.00052 19.9 0.0 0.00091 19.2 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain tRNA_SAD PF07973.14 gi|330508520|ref|YP_004384948.1| - 3.9e-14 52.5 1.2 6.8e-14 51.7 1.2 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|330508520|ref|YP_004384948.1| - 1.5e-10 40.2 0.0 2e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) UbiA PF01040.18 gi|330508521|ref|YP_004384949.1| - 8e-07 28.6 0.1 9.2e-07 28.4 0.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Fer4_20 PF14691.6 gi|330508522|ref|YP_004384950.1| - 5.2e-42 142.2 0.3 8e-42 141.6 0.3 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|330508522|ref|YP_004384950.1| - 6.9e-38 130.5 1.5 1e-37 130.0 1.5 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330508522|ref|YP_004384950.1| - 2.6e-11 43.9 2.6 4.9e-05 23.8 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|330508522|ref|YP_004384950.1| - 7.7e-10 38.5 2.0 4.2e-05 23.0 0.1 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|330508522|ref|YP_004384950.1| - 1.3e-07 31.7 2.3 2.2e-07 31.0 0.2 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|330508522|ref|YP_004384950.1| - 6.2e-07 28.9 2.3 0.00068 19.0 0.3 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|330508522|ref|YP_004384950.1| - 1.1e-06 29.0 0.2 0.0032 17.9 0.1 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|330508522|ref|YP_004384950.1| - 2.9e-05 23.6 4.0 0.00076 18.9 0.3 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330508522|ref|YP_004384950.1| - 0.00011 21.5 1.8 0.00011 21.5 1.8 2.4 3 0 0 3 3 3 1 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|330508522|ref|YP_004384950.1| - 0.00013 21.4 0.2 0.04 13.3 0.0 2.7 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|330508522|ref|YP_004384950.1| - 0.0003 19.6 0.7 0.0003 19.6 0.7 2.4 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.17 gi|330508522|ref|YP_004384950.1| - 0.00036 19.9 0.3 0.00036 19.9 0.3 1.8 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|330508522|ref|YP_004384950.1| - 0.00045 19.4 4.6 0.0014 17.8 0.2 2.8 3 0 0 3 3 3 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|330508522|ref|YP_004384950.1| - 0.00075 18.9 0.2 0.0048 16.2 0.2 2.3 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.19 gi|330508522|ref|YP_004384950.1| - 0.0015 17.8 0.3 0.012 14.8 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain PALP PF00291.25 gi|330508522|ref|YP_004384950.1| - 0.0027 17.2 0.7 0.43 10.0 0.0 2.6 2 1 1 3 3 3 1 Pyridoxal-phosphate dependent enzyme DAO PF01266.24 gi|330508522|ref|YP_004384950.1| - 0.0039 16.8 4.5 0.0071 16.0 0.8 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase Fer4_7 PF12838.7 gi|330508522|ref|YP_004384950.1| - 0.013 16.1 0.6 0.013 16.1 0.6 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain K_oxygenase PF13434.6 gi|330508522|ref|YP_004384950.1| - 0.018 14.2 0.0 0.43 9.7 0.0 2.6 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) F420_oxidored PF03807.17 gi|330508522|ref|YP_004384950.1| - 0.02 15.5 2.6 0.34 11.5 0.0 3.5 5 0 0 5 5 2 0 NADP oxidoreductase coenzyme F420-dependent Oxidored_nitro PF00148.19 gi|330508522|ref|YP_004384950.1| - 0.032 13.0 0.0 0.056 12.2 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase ELFV_dehydrog PF00208.21 gi|330508522|ref|YP_004384950.1| - 0.033 13.9 0.0 0.72 9.5 0.0 2.3 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 3HCDH_N PF02737.18 gi|330508522|ref|YP_004384950.1| - 0.033 14.1 1.1 2.1 8.2 0.1 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|330508522|ref|YP_004384950.1| - 0.049 13.2 0.1 0.96 9.0 0.0 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AdoHcyase_NAD PF00670.21 gi|330508522|ref|YP_004384950.1| - 0.073 13.1 2.0 0.87 9.6 0.0 2.7 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Shikimate_DH PF01488.20 gi|330508522|ref|YP_004384950.1| - 0.11 12.6 0.8 2.2 8.4 0.1 3.0 4 0 0 4 4 3 0 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.12 gi|330508522|ref|YP_004384950.1| - 0.14 11.2 0.3 0.24 10.4 0.3 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4_18 PF13746.6 gi|330508522|ref|YP_004384950.1| - 0.16 12.2 0.1 0.16 12.2 0.1 1.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain NAD_binding_9 PF13454.6 gi|330508522|ref|YP_004384950.1| - 0.4 10.7 6.0 0.27 11.2 0.4 2.7 3 0 0 3 3 2 0 FAD-NAD(P)-binding Fer4_2 PF12797.7 gi|330508522|ref|YP_004384950.1| - 0.54 10.5 7.8 0.14 12.3 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330508522|ref|YP_004384950.1| - 1.9 9.1 8.1 0.34 11.5 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain DHODB_Fe-S_bind PF10418.9 gi|330508523|ref|YP_004384951.1| - 1.6e-12 47.0 3.4 4.2e-12 45.7 3.4 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|330508523|ref|YP_004384951.1| - 0.0042 17.4 0.0 0.0069 16.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer2_3 PF13085.6 gi|330508523|ref|YP_004384951.1| - 0.12 12.4 0.3 0.23 11.5 0.3 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain ATPase_2 PF01637.18 gi|330508523|ref|YP_004384951.1| - 0.19 11.6 0.0 0.35 10.7 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Form_Nir_trans PF01226.17 gi|330508524|ref|YP_004384952.1| - 1.9e-81 272.9 30.2 2.2e-81 272.7 30.2 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter MFS_1 PF07690.16 gi|330508525|ref|YP_004384953.1| - 9e-42 143.2 49.0 9.5e-29 100.4 21.5 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|330508525|ref|YP_004384953.1| - 1.2e-06 27.4 26.9 0.00039 19.1 13.7 3.3 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|330508525|ref|YP_004384953.1| - 4.3e-06 25.8 22.0 0.0029 16.5 11.2 2.7 1 1 1 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 gi|330508525|ref|YP_004384953.1| - 0.00076 18.4 2.5 0.00076 18.4 2.5 2.0 2 0 0 2 2 2 1 LacY proton/sugar symporter DUF3959 PF13105.6 gi|330508525|ref|YP_004384953.1| - 0.044 13.3 0.8 0.085 12.3 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3959) SLATT_1 PF18181.1 gi|330508525|ref|YP_004384953.1| - 0.086 12.8 4.1 0.43 10.5 0.0 3.3 3 1 1 4 4 4 0 SMODS and SLOG-associating 2TM effector domain 1 HAD_2 PF13419.6 gi|330508526|ref|YP_004384954.1| - 1.9e-13 50.9 0.0 4.7e-13 49.6 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|330508526|ref|YP_004384954.1| - 1.3e-09 38.6 0.0 3.6e-08 33.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|330508526|ref|YP_004384954.1| - 0.0002 21.9 0.1 0.00037 21.0 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|330508526|ref|YP_004384954.1| - 0.0066 16.2 0.0 0.038 13.7 0.0 1.9 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_like PF13242.6 gi|330508526|ref|YP_004384954.1| - 0.0079 16.2 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Put_Phosphatase PF06888.12 gi|330508526|ref|YP_004384954.1| - 0.039 13.3 0.0 0.091 12.1 0.0 1.5 2 0 0 2 2 2 0 Putative Phosphatase Methyltrn_RNA_2 PF04013.12 gi|330508528|ref|YP_004384956.1| - 3.2e-58 196.7 0.0 3.6e-58 196.6 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Methyltrans_RNA PF04452.14 gi|330508528|ref|YP_004384956.1| - 0.052 12.9 0.0 0.08 12.3 0.0 1.2 1 0 0 1 1 1 0 RNA methyltransferase TM2 PF05154.16 gi|330508529|ref|YP_004384957.1| - 7.7e-05 22.9 6.8 0.00011 22.5 6.8 1.2 1 0 0 1 1 1 1 TM2 domain ABC2_membrane PF01061.24 gi|330508529|ref|YP_004384957.1| - 0.013 15.0 4.5 0.015 14.7 4.5 1.0 1 0 0 1 1 1 0 ABC-2 type transporter THUMP PF02926.17 gi|330508530|ref|YP_004384958.1| - 1e-06 28.9 0.0 2.6e-06 27.6 0.0 1.8 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|330508530|ref|YP_004384958.1| - 0.0049 17.2 3.8 0.018 15.4 0.6 3.0 3 1 0 3 3 3 1 DnaJ central domain Ribosomal_L21e PF01157.18 gi|330508531|ref|YP_004384959.1| - 4.2e-33 113.2 1.7 4.7e-33 113.1 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|330508532|ref|YP_004384960.1| - 7.6e-09 36.0 4.2 1.3e-08 35.2 4.2 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb4 HHH_3 PF12836.7 gi|330508532|ref|YP_004384960.1| - 0.086 13.1 0.1 0.23 11.8 0.0 1.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF655 PF04919.12 gi|330508533|ref|YP_004384961.1| - 1.1e-64 217.7 0.0 1.2e-64 217.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|330508533|ref|YP_004384961.1| - 2.6e-05 24.4 0.0 4e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|330508533|ref|YP_004384961.1| - 0.0015 18.7 0.0 0.003 17.8 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif RrnaAD PF00398.20 gi|330508534|ref|YP_004384962.1| - 6.7e-53 179.5 0.0 7.8e-53 179.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|330508534|ref|YP_004384962.1| - 1.3e-05 25.8 0.0 2.3e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330508534|ref|YP_004384962.1| - 0.00046 20.8 0.0 0.00088 19.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330508534|ref|YP_004384962.1| - 0.026 14.1 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|330508534|ref|YP_004384962.1| - 0.064 13.1 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Aldedh PF00171.22 gi|330508535|ref|YP_004384963.1| - 1.1e-165 551.6 0.0 1.3e-165 551.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|330508535|ref|YP_004384963.1| - 0.14 11.6 0.0 1 8.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) HTH_3 PF01381.22 gi|330508536|ref|YP_004384964.1| - 4.2e-07 29.9 0.0 6.1e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|330508536|ref|YP_004384964.1| - 3.8e-05 23.2 0.0 7.3e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|330508536|ref|YP_004384964.1| - 6.2e-05 22.7 0.0 0.0002 21.0 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain YdaS_antitoxin PF15943.5 gi|330508536|ref|YP_004384964.1| - 0.00062 19.6 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 gi|330508536|ref|YP_004384964.1| - 0.00082 18.7 0.0 0.0019 17.5 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_37 PF13744.6 gi|330508536|ref|YP_004384964.1| - 0.0018 18.2 0.0 0.0028 17.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain P22_Cro PF14549.6 gi|330508536|ref|YP_004384964.1| - 0.002 17.9 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro HTH_19 PF12844.7 gi|330508536|ref|YP_004384964.1| - 0.0032 17.4 0.0 0.0044 17.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|330508536|ref|YP_004384964.1| - 0.0048 17.3 0.0 0.0094 16.4 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Fe_dep_repress PF01325.19 gi|330508536|ref|YP_004384964.1| - 0.0075 16.4 0.0 0.012 15.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|330508536|ref|YP_004384964.1| - 0.019 14.7 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain MarR_2 PF12802.7 gi|330508536|ref|YP_004384964.1| - 0.021 14.7 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 gi|330508536|ref|YP_004384964.1| - 0.023 14.8 0.0 0.039 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RepB PF07506.11 gi|330508536|ref|YP_004384964.1| - 0.028 14.5 0.0 0.032 14.3 0.0 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_Crp_2 PF13545.6 gi|330508536|ref|YP_004384964.1| - 0.043 13.8 0.0 0.07 13.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|330508536|ref|YP_004384964.1| - 0.048 13.5 0.4 0.87 9.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|330508536|ref|YP_004384964.1| - 0.049 13.3 0.0 0.34 10.6 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 DUF483 PF04467.12 gi|330508536|ref|YP_004384964.1| - 0.06 13.4 0.0 0.076 13.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF483) KORA PF16509.5 gi|330508536|ref|YP_004384964.1| - 0.11 12.8 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor NAD_synthase PF02540.17 gi|330508537|ref|YP_004384965.1| - 9.7e-09 34.7 0.0 8e-08 31.7 0.0 2.0 2 0 0 2 2 2 1 NAD synthase ATP_bind_3 PF01171.20 gi|330508537|ref|YP_004384965.1| - 0.00037 20.3 0.0 0.00098 18.9 0.0 1.6 2 0 0 2 2 2 1 PP-loop family Asn_synthase PF00733.21 gi|330508537|ref|YP_004384965.1| - 0.0054 16.4 0.0 0.0079 15.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|330508537|ref|YP_004384965.1| - 0.011 14.5 0.0 2.9 6.6 0.0 2.4 2 0 0 2 2 2 0 tRNA methyl transferase PUB PF09409.10 gi|330508537|ref|YP_004384965.1| - 0.12 12.3 0.2 17 5.4 0.0 2.3 1 1 1 2 2 2 0 PUB domain ThiI PF02568.14 gi|330508537|ref|YP_004384965.1| - 0.13 11.8 0.0 0.27 10.8 0.0 1.5 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|330508537|ref|YP_004384965.1| - 0.2 11.7 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Aminotran_5 PF00266.19 gi|330508538|ref|YP_004384966.1| - 1.1e-114 383.3 0.0 1.1e-73 248.4 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|330508538|ref|YP_004384966.1| - 2.8e-07 30.2 0.0 3.7e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|330508538|ref|YP_004384966.1| - 3.6e-05 23.2 0.0 4.5e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|330508538|ref|YP_004384966.1| - 0.0011 17.6 0.0 0.0016 17.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme FdhD-NarQ PF02634.15 gi|330508539|ref|YP_004384967.1| - 2.1e-60 204.3 0.0 2.5e-60 204.1 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family ATP_bind_3 PF01171.20 gi|330508540|ref|YP_004384968.1| - 1.3e-15 57.6 0.0 2.8e-15 56.6 0.0 1.6 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|330508540|ref|YP_004384968.1| - 2.4e-07 29.9 0.1 3.1e-07 29.5 0.1 1.1 1 0 0 1 1 1 1 tRNA methyl transferase zn-ribbon_14 PF16503.5 gi|330508540|ref|YP_004384968.1| - 0.00047 19.6 3.6 0.00047 19.6 3.6 2.1 2 0 0 2 2 2 1 Zinc-ribbon PAPS_reduct PF01507.19 gi|330508540|ref|YP_004384968.1| - 0.002 18.2 0.0 0.003 17.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.21 gi|330508540|ref|YP_004384968.1| - 0.0021 17.8 0.0 0.003 17.3 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase Diphthami_syn_2 PF01902.17 gi|330508540|ref|YP_004384968.1| - 0.011 15.3 0.1 0.019 14.5 0.1 1.5 1 1 0 1 1 1 0 Diphthamide synthase QueC PF06508.13 gi|330508540|ref|YP_004384968.1| - 0.014 14.9 0.2 0.014 14.9 0.2 1.9 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC DDE_Tnp_1 PF01609.21 gi|330508541|ref|YP_004384969.1| - 2.8e-15 56.6 0.3 7.3e-14 51.9 0.1 2.7 2 1 0 2 2 2 1 Transposase DDE domain hGDE_central PF14702.6 gi|330508541|ref|YP_004384969.1| - 0.043 13.5 0.2 0.28 10.8 0.0 2.1 2 0 0 2 2 2 0 Central domain of human glycogen debranching enzyme DUF86 PF01934.17 gi|330508542|ref|YP_004384970.1| - 1.8e-26 92.3 0.1 2.1e-26 92.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.23 gi|330508543|ref|YP_004384971.1| - 5.6e-14 52.2 0.7 6.4e-14 52.0 0.7 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|330508543|ref|YP_004384971.1| - 1.1e-12 47.8 0.2 1.4e-12 47.5 0.2 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase FANCI_S1-cap PF14674.6 gi|330508543|ref|YP_004384971.1| - 0.11 12.6 0.0 0.3 11.2 0.0 1.7 1 0 0 1 1 1 0 FANCI solenoid 1 cap ELFV_dehydrog PF00208.21 gi|330508544|ref|YP_004384972.1| - 0.023 14.4 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HicB_lk_antitox PF15919.5 gi|330508545|ref|YP_004384973.1| - 0.00053 20.1 0.0 0.00058 20.0 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system NadA PF02445.16 gi|330508546|ref|YP_004384974.1| - 3e-118 394.3 0.6 3.4e-118 394.2 0.6 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF1246 PF06849.12 gi|330508546|ref|YP_004384974.1| - 0.11 12.5 0.0 0.26 11.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1246) DarT PF14487.6 gi|330508546|ref|YP_004384974.1| - 0.15 11.9 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 ssDNA thymidine ADP-ribosyltransferase, DarT ThiS PF02597.20 gi|330508547|ref|YP_004384975.1| - 6.3e-11 42.8 0.0 7e-11 42.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family TfuA PF07812.12 gi|330508548|ref|YP_004384976.1| - 2.2e-43 146.8 0.0 3.5e-43 146.1 0.0 1.3 1 0 0 1 1 1 1 TfuA-like protein YcaO PF02624.16 gi|330508549|ref|YP_004384977.1| - 1.1e-89 300.9 1.8 1.9e-89 300.2 1.6 1.4 2 0 0 2 2 2 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding 4HBT PF03061.22 gi|330508550|ref|YP_004384978.1| - 2.2e-12 47.1 0.1 2.8e-12 46.8 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|330508550|ref|YP_004384978.1| - 6.2e-11 42.5 0.0 8.2e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) PS-DH PF14765.6 gi|330508550|ref|YP_004384978.1| - 0.00054 19.3 0.0 0.0007 18.9 0.0 1.1 1 0 0 1 1 1 1 Polyketide synthase dehydratase 4HBT_3 PF13622.6 gi|330508550|ref|YP_004384978.1| - 0.00077 19.8 0.0 0.00093 19.5 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily AAA_27 PF13514.6 gi|330508550|ref|YP_004384978.1| - 0.0046 16.6 0.0 0.0061 16.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain MaoC_dehydratas PF01575.19 gi|330508550|ref|YP_004384978.1| - 0.0095 15.5 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain PriA_C PF18074.1 gi|330508551|ref|YP_004384979.1| - 0.054 14.3 0.0 0.084 13.7 0.0 1.3 1 0 0 1 1 1 0 Primosomal protein N C-terminal domain Aminotran_1_2 PF00155.21 gi|330508552|ref|YP_004384980.1| - 4.7e-65 220.1 0.0 5.2e-65 220.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|330508552|ref|YP_004384980.1| - 7.7e-11 41.9 0.0 1.2e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|330508552|ref|YP_004384980.1| - 8.4e-09 34.8 0.0 1.3e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|330508552|ref|YP_004384980.1| - 1.5e-07 31.0 0.2 3.4e-07 29.8 0.0 1.6 2 1 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|330508552|ref|YP_004384980.1| - 9.3e-06 24.4 0.0 1.5e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|330508552|ref|YP_004384980.1| - 0.0015 17.5 0.0 0.037 12.9 0.0 2.0 1 1 0 2 2 2 1 Allinase NIR_SIR_ferr PF03460.17 gi|330508552|ref|YP_004384980.1| - 0.057 13.3 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain eIF-5a PF01287.20 gi|330508553|ref|YP_004384981.1| - 4.1e-07 30.0 0.2 8.9e-07 28.9 0.2 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|330508553|ref|YP_004384981.1| - 6.8e-06 26.0 0.0 1.2e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain Methyltransf_11 PF08241.12 gi|330508554|ref|YP_004384982.1| - 1.9e-14 54.1 0.0 3.2e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330508554|ref|YP_004384982.1| - 2.5e-14 53.5 0.0 4.3e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330508554|ref|YP_004384982.1| - 4.7e-12 46.5 0.0 8.6e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330508554|ref|YP_004384982.1| - 2.5e-09 37.8 0.0 4.2e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330508554|ref|YP_004384982.1| - 2.7e-09 37.0 0.0 4e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330508554|ref|YP_004384982.1| - 0.029 13.9 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|330508554|ref|YP_004384982.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Metallophos_3 PF14582.6 gi|330508555|ref|YP_004384983.1| - 9.7e-17 61.1 0.0 2.3e-15 56.6 0.0 2.2 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.7 gi|330508555|ref|YP_004384983.1| - 1.3e-15 58.0 0.0 2.7e-15 56.9 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|330508555|ref|YP_004384983.1| - 8.6e-15 55.8 0.0 1.2e-14 55.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Pik1 PF11522.8 gi|330508555|ref|YP_004384983.1| - 0.018 15.0 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Yeast phosphatidylinositol-4-OH kinase Pik1 Fer4_5 PF12801.7 gi|330508557|ref|YP_004384985.1| - 4e-11 42.7 23.5 2.9e-09 36.7 5.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.27 gi|330508557|ref|YP_004384985.1| - 7.3e-10 38.2 19.9 2.4e-06 27.1 3.5 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330508557|ref|YP_004384985.1| - 3e-09 36.9 14.0 8.9e-06 25.8 14.3 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330508557|ref|YP_004384985.1| - 4e-08 33.0 17.9 0.0004 20.3 3.2 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330508557|ref|YP_004384985.1| - 1.4e-07 32.0 15.3 0.00059 20.4 1.9 3.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330508557|ref|YP_004384985.1| - 2.8e-07 30.6 12.2 7.4e-05 22.8 1.1 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330508557|ref|YP_004384985.1| - 2.2e-06 27.8 10.1 2.2e-06 27.8 10.1 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330508557|ref|YP_004384985.1| - 6.4e-06 26.2 15.4 6.4e-06 26.2 15.4 3.0 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330508557|ref|YP_004384985.1| - 1.1e-05 25.2 10.5 0.00073 19.5 0.8 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330508557|ref|YP_004384985.1| - 9.5e-05 23.3 17.1 0.0019 19.1 2.2 2.9 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|330508557|ref|YP_004384985.1| - 0.00013 22.8 6.3 0.15 13.0 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330508557|ref|YP_004384985.1| - 0.00022 21.6 14.5 0.017 15.6 0.9 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330508557|ref|YP_004384985.1| - 0.00023 21.6 17.1 0.047 14.2 1.9 2.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330508557|ref|YP_004384985.1| - 0.00067 20.0 14.7 0.0054 17.1 3.3 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|330508557|ref|YP_004384985.1| - 0.0018 19.1 4.2 0.0018 19.1 4.2 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|330508557|ref|YP_004384985.1| - 0.052 14.1 18.4 0.069 13.7 2.2 2.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|330508557|ref|YP_004384985.1| - 0.29 11.3 0.2 0.29 11.3 0.2 1.6 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|330508557|ref|YP_004384985.1| - 4.4 8.1 13.9 11 6.9 3.3 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF202 PF02656.15 gi|330508557|ref|YP_004384985.1| - 8.9 6.8 9.4 0.89 10.1 4.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF772 PF05598.11 gi|330508558|ref|YP_004384986.1| - 2.6e-21 75.4 0.0 4.8e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|330508558|ref|YP_004384986.1| - 1.5e-15 57.4 4.6 5e-15 55.7 4.6 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|330508558|ref|YP_004384986.1| - 3e-05 23.8 0.3 0.00012 21.8 0.3 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.6 gi|330508558|ref|YP_004384986.1| - 3.1e-05 24.2 0.4 5.3e-05 23.4 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain EnY2 PF10163.9 gi|330508558|ref|YP_004384986.1| - 0.052 13.9 0.1 0.12 12.8 0.1 1.6 1 0 0 1 1 1 0 Transcription factor e(y)2 Mad3_BUB1_I PF08311.12 gi|330508559|ref|YP_004384987.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 Bep_C_terminal PF17841.1 gi|330508560|ref|YP_004384988.1| - 0.047 13.9 0.2 0.067 13.4 0.2 1.2 1 0 0 1 1 1 0 BID domain of Bartonella effector protein (Bep) PqqD PF05402.12 gi|330508561|ref|YP_004384989.1| - 1.3e-06 28.6 0.0 2.3e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Radical_SAM PF04055.21 gi|330508562|ref|YP_004384990.1| - 3.1e-20 73.2 0.9 5.1e-20 72.5 0.5 1.6 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|330508562|ref|YP_004384990.1| - 4.6e-19 68.6 0.1 8e-19 67.9 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain Fer4_14 PF13394.6 gi|330508562|ref|YP_004384990.1| - 0.0028 17.8 0.2 0.0091 16.1 0.2 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|330508562|ref|YP_004384990.1| - 0.0067 16.7 0.1 0.02 15.2 0.1 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain PemK_toxin PF02452.17 gi|330508563|ref|YP_004384991.1| - 1.2e-12 48.2 0.0 1.4e-12 48.0 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system TPR_12 PF13424.6 gi|330508565|ref|YP_004384993.1| - 3.1e-57 190.8 29.5 2.8e-15 56.4 0.5 5.1 2 1 5 7 7 7 6 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330508565|ref|YP_004384993.1| - 1e-31 107.4 12.2 1.4e-05 24.7 0.2 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330508565|ref|YP_004384993.1| - 1.2e-28 98.1 9.3 0.00012 21.8 0.2 6.7 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330508565|ref|YP_004384993.1| - 7e-28 94.6 11.1 2.7e-05 23.9 0.0 7.3 8 0 0 8 8 6 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330508565|ref|YP_004384993.1| - 4e-25 85.9 13.3 0.00056 19.8 0.1 7.2 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330508565|ref|YP_004384993.1| - 2.7e-23 80.2 6.5 8.6e-05 22.5 0.1 7.0 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|330508565|ref|YP_004384993.1| - 1.4e-13 51.0 1.0 2.6e-09 36.9 0.1 3.0 1 1 2 3 3 3 2 MalT-like TPR region SNAP PF14938.6 gi|330508565|ref|YP_004384993.1| - 6.8e-12 45.4 0.1 1.8e-05 24.3 0.3 2.2 2 0 0 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_6 PF13174.6 gi|330508565|ref|YP_004384993.1| - 1e-11 44.7 6.9 6.1 7.7 0.0 8.6 7 1 0 7 7 7 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330508565|ref|YP_004384993.1| - 1.3e-10 41.2 17.0 1.2 10.1 0.0 8.2 9 0 0 9 9 6 3 Tetratricopeptide repeat NB-ARC PF00931.22 gi|330508565|ref|YP_004384993.1| - 4.6e-10 39.1 0.0 8.5e-10 38.2 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain Rapsyn_N PF10579.9 gi|330508565|ref|YP_004384993.1| - 7.5e-08 32.4 0.6 0.19 11.8 0.0 4.0 1 1 3 4 4 4 2 Rapsyn N-terminal myristoylation and linker region TPR_11 PF13414.6 gi|330508565|ref|YP_004384993.1| - 1.1e-06 28.3 15.0 0.045 13.4 0.3 5.6 5 0 0 5 5 5 2 TPR repeat AAA_16 PF13191.6 gi|330508565|ref|YP_004384993.1| - 6.4e-06 26.7 0.1 2.4e-05 24.8 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain DUF3856 PF12968.7 gi|330508565|ref|YP_004384993.1| - 1.2e-05 25.4 1.9 0.034 14.2 0.1 2.9 1 1 0 2 2 2 2 Domain of Unknown Function (DUF3856) TPR_19 PF14559.6 gi|330508565|ref|YP_004384993.1| - 1.7e-05 25.2 9.7 0.14 12.6 0.1 5.8 4 2 1 5 5 5 2 Tetratricopeptide repeat DUF2753 PF10952.8 gi|330508565|ref|YP_004384993.1| - 4.8e-05 23.5 0.2 2.5 8.2 0.0 4.5 3 2 2 5 5 5 2 Protein of unknown function (DUF2753) DUF4810 PF16068.5 gi|330508565|ref|YP_004384993.1| - 0.0004 20.9 0.9 3.9 8.1 0.0 4.4 4 1 1 5 5 4 1 Domain of unknown function (DUF4810) TPR_17 PF13431.6 gi|330508565|ref|YP_004384993.1| - 0.00072 19.8 2.3 6.8 7.3 0.0 5.3 5 0 0 5 5 5 1 Tetratricopeptide repeat AAA_22 PF13401.6 gi|330508565|ref|YP_004384993.1| - 0.0034 17.7 0.0 0.0093 16.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|330508565|ref|YP_004384993.1| - 0.028 14.3 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ANAPC3 PF12895.7 gi|330508565|ref|YP_004384993.1| - 0.062 13.5 2.5 6.9 7.0 0.1 4.2 3 2 1 4 4 4 0 Anaphase-promoting complex, cyclosome, subunit 3 Wzy_C_2 PF11846.8 gi|330508565|ref|YP_004384993.1| - 0.12 12.3 0.0 8 6.3 0.0 2.8 2 0 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal DUF4167 PF13763.6 gi|330508565|ref|YP_004384993.1| - 0.17 12.0 1.6 1.2 9.4 0.1 3.0 4 0 0 4 4 3 0 Domain of unknown function (DUF4167) ComR_TPR PF18710.1 gi|330508565|ref|YP_004384993.1| - 0.2 11.2 0.0 1.4 8.4 0.0 2.2 2 0 0 2 2 2 0 ComR tetratricopeptide TPR_9 PF13371.6 gi|330508565|ref|YP_004384993.1| - 0.24 11.6 8.5 8.4 6.6 0.1 5.4 4 1 2 6 6 6 0 Tetratricopeptide repeat HicB_lk_antitox PF15919.5 gi|330508566|ref|YP_004384994.1| - 7.9e-10 38.9 0.0 8.4e-10 38.8 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|330508566|ref|YP_004384994.1| - 0.0077 16.2 0.0 0.0078 16.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) Radical_SAM PF04055.21 gi|330508567|ref|YP_004384995.1| - 8.3e-16 58.8 0.0 1.7e-15 57.8 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|330508567|ref|YP_004384995.1| - 8e-08 32.7 0.2 1.6e-07 31.7 0.2 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|330508567|ref|YP_004384995.1| - 0.00053 20.3 0.0 0.0009 19.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330508567|ref|YP_004384995.1| - 0.0043 17.2 0.0 0.0073 16.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain polyprenyl_synt PF00348.17 gi|330508568|ref|YP_004384996.1| - 1e-45 155.8 0.0 1.3e-45 155.5 0.0 1.3 1 1 0 1 1 1 1 Polyprenyl synthetase CoA_binding_2 PF13380.6 gi|330508570|ref|YP_004384998.1| - 1.3e-33 115.9 0.0 1.5e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|330508570|ref|YP_004384998.1| - 5e-06 27.1 0.0 6.8e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain DUF4277 PF14104.6 gi|330508571|ref|YP_004384999.1| - 2.8e-41 140.3 0.0 6.9e-41 139.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|330508571|ref|YP_004384999.1| - 9e-11 41.8 0.0 2.4e-10 40.4 0.0 1.7 1 1 0 1 1 1 1 Transposase DDE domain AT_hook PF02178.19 gi|330508571|ref|YP_004384999.1| - 0.043 13.7 0.3 0.11 12.5 0.3 1.6 1 0 0 1 1 1 0 AT hook motif HicB_lk_antitox PF15919.5 gi|330508573|ref|YP_004385001.1| - 4.3e-09 36.5 0.0 4.5e-09 36.5 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HTH_Tnp_1 PF01527.20 gi|330508574|ref|YP_004385002.1| - 4.3e-10 39.8 0.1 6.4e-10 39.2 0.1 1.5 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.6 gi|330508574|ref|YP_004385002.1| - 0.0043 16.8 0.0 0.0089 15.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|330508574|ref|YP_004385002.1| - 0.005 16.9 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PKcGMP_CC PF16808.5 gi|330508574|ref|YP_004385002.1| - 0.033 14.0 0.3 0.074 12.9 0.3 1.6 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4733 PF15878.5 gi|330508574|ref|YP_004385002.1| - 0.058 13.9 0.1 0.12 12.8 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4733) rve PF00665.26 gi|330508575|ref|YP_004385003.1| - 1.4e-25 89.8 0.0 2.2e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 gi|330508575|ref|YP_004385003.1| - 2.7e-19 69.1 0.3 1.9e-18 66.3 0.3 2.1 2 0 0 2 2 2 1 HTH-like domain rve_3 PF13683.6 gi|330508575|ref|YP_004385003.1| - 3.8e-16 58.6 0.1 9.1e-16 57.4 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|330508575|ref|YP_004385003.1| - 4.7e-08 33.1 3.6 9.4e-08 32.1 2.4 2.1 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 gi|330508575|ref|YP_004385003.1| - 0.00016 21.9 0.3 0.00028 21.1 0.3 1.4 1 0 0 1 1 1 1 DDE domain GP3_package PF16677.5 gi|330508575|ref|YP_004385003.1| - 0.027 14.6 0.1 12 6.1 0.0 2.4 2 0 0 2 2 2 0 DNA-packaging protein gp3 HTH_Tnp_Tc3_2 PF01498.18 gi|330508575|ref|YP_004385003.1| - 0.041 14.1 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_Tnp_1_2 PF13022.6 gi|330508575|ref|YP_004385003.1| - 0.049 13.8 0.1 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase LPG_synthase_TM PF03706.13 gi|330508576|ref|YP_004385004.1| - 1.5e-42 146.2 33.5 1.7e-42 146.0 33.5 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region NAD_binding_8 PF13450.6 gi|330508577|ref|YP_004385005.1| - 5.8e-17 61.7 0.0 1e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|330508577|ref|YP_004385005.1| - 4.7e-10 39.3 0.0 1.8e-08 34.1 0.0 2.0 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 gi|330508577|ref|YP_004385005.1| - 1.3e-08 34.4 0.3 1.6e-07 30.8 0.3 2.0 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|330508577|ref|YP_004385005.1| - 1.4e-06 27.3 0.0 2.2e-05 23.4 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|330508577|ref|YP_004385005.1| - 1.4e-06 28.0 0.0 3e-06 26.9 0.0 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|330508577|ref|YP_004385005.1| - 1.6e-06 28.0 0.1 7.8e-06 25.7 0.3 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|330508577|ref|YP_004385005.1| - 0.00022 20.6 0.1 0.054 12.7 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|330508577|ref|YP_004385005.1| - 0.00074 18.8 0.2 0.0012 18.1 0.2 1.3 1 0 0 1 1 1 1 Thi4 family GDI PF00996.18 gi|330508577|ref|YP_004385005.1| - 0.0011 17.6 0.0 0.0015 17.2 0.0 1.2 1 0 0 1 1 1 1 GDP dissociation inhibitor Pyr_redox_2 PF07992.14 gi|330508577|ref|YP_004385005.1| - 0.0043 16.3 0.0 0.037 13.2 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330508577|ref|YP_004385005.1| - 0.011 16.2 1.3 0.14 12.8 0.3 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.19 gi|330508577|ref|YP_004385005.1| - 0.022 13.2 0.1 0.034 12.6 0.1 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like GIDA PF01134.22 gi|330508577|ref|YP_004385005.1| - 0.026 13.6 0.0 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|330508577|ref|YP_004385005.1| - 0.037 13.3 0.2 0.053 12.8 0.2 1.2 1 0 0 1 1 1 0 FAD binding domain Glycos_transf_2 PF00535.26 gi|330508578|ref|YP_004385006.1| - 5.8e-26 91.3 0.0 7.7e-26 90.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330508578|ref|YP_004385006.1| - 4e-15 56.3 0.0 1.5e-14 54.4 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|330508578|ref|YP_004385006.1| - 1.6e-08 34.3 0.0 3.4e-08 33.2 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|330508578|ref|YP_004385006.1| - 7.2e-06 26.0 0.0 1.6e-05 24.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|330508578|ref|YP_004385006.1| - 1.7e-05 24.4 0.0 3.9e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 gi|330508578|ref|YP_004385006.1| - 0.00086 19.0 0.1 0.006 16.3 0.0 2.3 2 1 0 2 2 2 1 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.6 gi|330508578|ref|YP_004385006.1| - 0.01 16.3 0.0 0.031 14.8 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase family 2 Radical_SAM PF04055.21 gi|330508579|ref|YP_004385007.1| - 5.2e-15 56.2 0.0 1e-12 48.7 0.0 2.8 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330508579|ref|YP_004385007.1| - 4.8e-06 26.9 1.0 7e-05 23.1 0.0 2.4 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330508579|ref|YP_004385007.1| - 1.4e-05 25.2 0.8 9.4e-05 22.5 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Glycos_transf_1 PF00534.20 gi|330508580|ref|YP_004385008.1| - 1.5e-30 106.0 0.0 3.6e-30 104.8 0.0 1.6 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330508580|ref|YP_004385008.1| - 3.4e-26 92.3 0.1 6.7e-26 91.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|330508580|ref|YP_004385008.1| - 1.2e-23 84.0 0.0 2.2e-23 83.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|330508580|ref|YP_004385008.1| - 6e-16 59.3 0.0 1.2e-15 58.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|330508580|ref|YP_004385008.1| - 2.5e-13 50.3 0.1 1.8e-10 40.9 0.1 2.3 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|330508580|ref|YP_004385008.1| - 1.9e-07 31.2 0.0 3.7e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|330508580|ref|YP_004385008.1| - 7.8e-07 29.4 0.0 1.5e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_28 PF03033.20 gi|330508580|ref|YP_004385008.1| - 0.074 13.1 0.0 1.4 8.9 0.0 2.6 3 0 0 3 3 3 0 Glycosyltransferase family 28 N-terminal domain MarR_2 PF12802.7 gi|330508581|ref|YP_004385009.1| - 2.3e-05 24.2 0.0 3.9e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|330508581|ref|YP_004385009.1| - 0.00017 21.3 0.0 0.00035 20.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|330508581|ref|YP_004385009.1| - 0.00027 20.8 0.0 0.0007 19.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|330508581|ref|YP_004385009.1| - 0.00043 20.1 0.0 0.00071 19.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|330508581|ref|YP_004385009.1| - 0.0026 17.8 0.0 0.0055 16.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|330508581|ref|YP_004385009.1| - 0.0053 16.3 0.1 0.016 14.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.12 gi|330508581|ref|YP_004385009.1| - 0.0077 16.0 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|330508581|ref|YP_004385009.1| - 0.013 15.4 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|330508581|ref|YP_004385009.1| - 0.028 14.9 0.0 0.054 14.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DprA_WH PF17782.1 gi|330508581|ref|YP_004385009.1| - 0.035 14.2 0.0 0.066 13.3 0.0 1.4 1 0 0 1 1 1 0 DprA winged helix domain HTH_11 PF08279.12 gi|330508581|ref|YP_004385009.1| - 0.05 13.6 0.0 0.15 12.0 0.0 1.8 1 0 0 1 1 1 0 HTH domain Penicillinase_R PF03965.16 gi|330508581|ref|YP_004385009.1| - 0.065 13.6 0.0 0.092 13.1 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor DUF5343 PF17278.2 gi|330508581|ref|YP_004385009.1| - 0.09 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5343) B-block_TFIIIC PF04182.12 gi|330508581|ref|YP_004385009.1| - 0.091 12.9 0.1 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Rrf2 PF02082.20 gi|330508581|ref|YP_004385009.1| - 0.1 12.9 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator RDD PF06271.12 gi|330508582|ref|YP_004385010.1| - 3.1e-14 53.4 5.3 4.7e-14 52.8 5.3 1.3 1 0 0 1 1 1 1 RDD family NPCBM_assoc PF10633.9 gi|330508583|ref|YP_004385011.1| - 1.7e-06 28.2 0.0 0.21 11.9 0.0 3.5 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|330508583|ref|YP_004385011.1| - 0.11 12.8 0.9 13 6.2 0.0 3.1 4 0 0 4 4 4 0 Domain of unknown function DUF11 MMPL PF03176.15 gi|330508584|ref|YP_004385012.1| - 1.4e-48 165.6 19.7 7.2e-25 87.6 8.6 2.3 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|330508584|ref|YP_004385012.1| - 1.5e-08 34.6 9.1 3e-05 23.9 0.7 2.9 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|330508584|ref|YP_004385012.1| - 4.6e-08 32.7 6.1 4.6e-08 32.7 6.1 2.6 2 0 0 2 2 2 1 Protein export membrane protein ACR_tran PF00873.19 gi|330508584|ref|YP_004385012.1| - 3.8e-07 28.2 24.4 4.6e-06 24.6 5.5 2.3 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.18 gi|330508584|ref|YP_004385012.1| - 9.5 4.1 17.6 0.081 11.0 2.7 2.5 2 0 0 2 2 2 0 Patched family HTH_DeoR PF08220.12 gi|330508585|ref|YP_004385013.1| - 1.1e-05 25.1 0.1 3.3e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|330508585|ref|YP_004385013.1| - 0.00017 21.5 0.2 0.00055 19.8 0.0 1.9 3 0 0 3 3 3 1 HTH domain HTH_24 PF13412.6 gi|330508585|ref|YP_004385013.1| - 0.0012 18.3 0.0 0.0035 16.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|330508585|ref|YP_004385013.1| - 0.0017 18.1 0.0 0.0056 16.4 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Mga PF08280.11 gi|330508585|ref|YP_004385013.1| - 0.0023 17.9 0.1 0.0065 16.5 0.1 1.7 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_36 PF13730.6 gi|330508585|ref|YP_004385013.1| - 0.0027 17.6 0.0 0.0063 16.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|330508585|ref|YP_004385013.1| - 0.015 15.2 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SH3_13 PF18335.1 gi|330508585|ref|YP_004385013.1| - 0.021 14.7 0.1 0.034 14.0 0.1 1.4 1 0 0 1 1 1 0 ATP-dependent RecD-like DNA helicase SH3 domain HTH_43 PF09904.9 gi|330508585|ref|YP_004385013.1| - 0.086 12.8 0.0 0.15 12.0 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn helix GntR PF00392.21 gi|330508585|ref|YP_004385013.1| - 0.089 12.5 0.0 0.25 11.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|330508585|ref|YP_004385013.1| - 0.11 12.6 0.0 1.1 9.4 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix TPP_enzyme_N PF02776.18 gi|330508586|ref|YP_004385014.1| - 3.8e-08 33.1 0.0 5.5e-08 32.6 0.0 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|330508587|ref|YP_004385015.1| - 1.1e-19 70.8 0.1 2.2e-19 69.8 0.1 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HcyBio PF01837.16 gi|330508588|ref|YP_004385016.1| - 1.4e-110 369.5 0.0 1.5e-110 369.3 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4_6 PF12837.7 gi|330508588|ref|YP_004385016.1| - 3.6e-08 33.1 10.4 0.00011 22.1 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330508588|ref|YP_004385016.1| - 1.3e-07 31.7 9.1 2.6e-07 30.7 9.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330508588|ref|YP_004385016.1| - 6.9e-07 29.8 10.5 2.1e-06 28.2 10.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330508588|ref|YP_004385016.1| - 8.1e-07 28.6 11.2 2.1e-05 24.2 1.0 3.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330508588|ref|YP_004385016.1| - 1.3e-05 25.0 13.0 0.0015 18.5 1.6 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330508588|ref|YP_004385016.1| - 2.2e-05 24.4 11.5 0.00034 20.7 11.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330508588|ref|YP_004385016.1| - 0.00026 21.1 8.3 0.00052 20.1 8.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330508588|ref|YP_004385016.1| - 0.00062 20.3 8.7 1 10.0 0.7 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330508588|ref|YP_004385016.1| - 0.0033 18.3 9.3 0.54 11.2 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|330508588|ref|YP_004385016.1| - 0.057 14.4 5.4 0.057 14.4 5.4 3.3 3 1 0 3 3 2 0 4Fe-4S binding domain Fer4_11 PF13247.6 gi|330508588|ref|YP_004385016.1| - 0.074 13.2 3.5 0.16 12.1 3.5 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Bunya_G1 PF03557.15 gi|330508588|ref|YP_004385016.1| - 0.22 9.5 0.2 0.29 9.1 0.2 1.1 1 0 0 1 1 1 0 Bunyavirus glycoprotein G1 Fer4_8 PF13183.6 gi|330508588|ref|YP_004385016.1| - 0.96 9.9 11.9 0.54 10.7 2.0 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330508588|ref|YP_004385016.1| - 1.4 9.7 10.3 10 6.9 1.2 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|330508588|ref|YP_004385016.1| - 4.7 8.0 23.9 0.16 12.5 3.6 3.1 3 1 0 3 3 2 0 4Fe-4S binding domain NMT1_2 PF13379.6 gi|330508589|ref|YP_004385017.1| - 1.6e-32 113.2 0.1 2.8e-32 112.4 0.1 1.3 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|330508589|ref|YP_004385017.1| - 1.4e-15 57.8 0.0 1.9e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_3 PF16868.5 gi|330508589|ref|YP_004385017.1| - 0.00018 21.0 0.1 0.013 15.0 0.0 2.5 1 1 1 2 2 2 2 NMT1-like family Phosphonate-bd PF12974.7 gi|330508589|ref|YP_004385017.1| - 0.051 13.2 0.0 0.074 12.6 0.0 1.3 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein BPD_transp_1 PF00528.22 gi|330508590|ref|YP_004385018.1| - 2.9e-22 79.3 11.1 2.9e-22 79.3 11.1 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component YibE_F PF07907.11 gi|330508590|ref|YP_004385018.1| - 0.056 12.9 6.0 0.015 14.8 2.1 2.0 2 1 0 2 2 2 0 YibE/F-like protein AdoMet_Synthase PF01941.19 gi|330508591|ref|YP_004385019.1| - 1.9e-175 583.4 1.2 2.2e-175 583.2 1.2 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) ParA PF10609.9 gi|330508592|ref|YP_004385020.1| - 3e-97 324.9 0.1 3.5e-97 324.7 0.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|330508592|ref|YP_004385020.1| - 9.9e-15 54.7 0.0 3.6e-14 52.9 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|330508592|ref|YP_004385020.1| - 5.1e-09 35.8 0.0 7.4e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.6 gi|330508592|ref|YP_004385020.1| - 1.9e-08 34.4 0.5 7.1e-07 29.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|330508592|ref|YP_004385020.1| - 7.2e-06 25.4 2.2 0.00071 18.9 0.2 2.9 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|330508592|ref|YP_004385020.1| - 0.0001 22.2 0.2 0.0014 18.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|330508592|ref|YP_004385020.1| - 0.00059 19.4 0.1 0.0084 15.6 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 gi|330508592|ref|YP_004385020.1| - 0.0083 16.0 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase CLP1_P PF16575.5 gi|330508592|ref|YP_004385020.1| - 0.01 15.6 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|330508592|ref|YP_004385020.1| - 0.038 13.6 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|330508592|ref|YP_004385020.1| - 0.05 12.9 0.0 0.089 12.1 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_18 PF13238.6 gi|330508592|ref|YP_004385020.1| - 0.077 13.5 0.1 0.13 12.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|330508593|ref|YP_004385021.1| - 2.4e-13 50.8 0.0 3.7e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HTH_5 PF01022.20 gi|330508593|ref|YP_004385021.1| - 0.0048 16.7 0.1 0.01 15.7 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|330508593|ref|YP_004385021.1| - 0.017 15.0 0.0 0.21 11.5 0.0 2.5 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|330508593|ref|YP_004385021.1| - 0.032 14.3 0.1 0.13 12.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|330508593|ref|YP_004385021.1| - 0.036 13.9 0.0 0.17 11.7 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain Fer4_12 PF13353.6 gi|330508593|ref|YP_004385021.1| - 0.061 13.6 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain HTH_27 PF13463.6 gi|330508593|ref|YP_004385021.1| - 0.18 12.3 0.1 1.2 9.7 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HEAT_2 PF13646.6 gi|330508594|ref|YP_004385022.1| - 4.8e-54 180.7 31.4 3.1e-19 69.2 0.2 4.5 1 1 4 5 5 5 5 HEAT repeats HEAT_PBS PF03130.16 gi|330508594|ref|YP_004385022.1| - 4e-35 116.9 32.2 5.2e-07 29.7 0.1 9.6 9 1 0 9 9 9 7 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|330508594|ref|YP_004385022.1| - 1.9e-28 96.1 5.1 0.013 15.7 0.0 8.7 9 0 0 9 9 9 7 HEAT repeat HEAT_EZ PF13513.6 gi|330508594|ref|YP_004385022.1| - 1.1e-13 51.4 15.7 0.2 12.2 0.0 8.8 5 1 3 8 8 8 4 HEAT-like repeat Arm PF00514.23 gi|330508594|ref|YP_004385022.1| - 6.2e-11 41.9 0.6 2.1 8.5 0.0 7.3 5 3 3 8 8 8 2 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|330508594|ref|YP_004385022.1| - 1.2e-06 28.6 0.1 1.1 9.3 0.0 5.0 1 1 4 5 5 5 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|330508594|ref|YP_004385022.1| - 8.3e-06 24.6 0.0 0.29 9.6 0.0 4.3 1 1 2 3 3 3 2 Adaptin N terminal region Vac14_Fab1_bd PF12755.7 gi|330508594|ref|YP_004385022.1| - 0.049 14.2 0.0 20 5.9 0.0 4.1 2 2 4 6 6 6 0 Vacuolar 14 Fab1-binding region TetR_C_6 PF13977.6 gi|330508594|ref|YP_004385022.1| - 0.2 11.9 9.8 0.49 10.6 0.5 3.3 3 1 2 5 5 5 0 BetI-type transcriptional repressor, C-terminal DUF615 PF04751.14 gi|330508594|ref|YP_004385022.1| - 0.21 11.6 2.3 0.55 10.2 0.3 2.7 2 1 2 4 4 4 0 Protein of unknown function (DUF615) Peptidase_M17_N PF02789.17 gi|330508594|ref|YP_004385022.1| - 0.81 9.6 3.0 3.8 7.4 0.1 3.0 3 1 0 3 3 3 0 Cytosol aminopeptidase family, N-terminal domain DNA_alkylation PF08713.11 gi|330508594|ref|YP_004385022.1| - 1.8 8.2 6.4 7.9 6.1 0.1 3.3 2 1 1 3 3 3 0 DNA alkylation repair enzyme CxxCxxCC PF03692.15 gi|330508595|ref|YP_004385023.1| - 1.3e-13 51.4 0.3 2.3e-13 50.6 0.3 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain YycC PF14174.6 gi|330508595|ref|YP_004385023.1| - 0.075 12.8 0.2 0.23 11.3 0.0 1.9 2 0 0 2 2 2 0 YycC-like protein MMR_HSR1 PF01926.23 gi|330508596|ref|YP_004385024.1| - 7.4e-15 55.0 0.0 9.2e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|330508596|ref|YP_004385024.1| - 6.2e-11 42.1 0.0 5.5e-10 39.0 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B Ras PF00071.22 gi|330508596|ref|YP_004385024.1| - 0.001 18.7 0.0 0.0027 17.3 0.0 1.6 1 1 0 1 1 1 1 Ras family GTP_EFTU PF00009.27 gi|330508596|ref|YP_004385024.1| - 0.0011 18.5 0.0 0.069 12.7 0.0 2.3 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Roc PF08477.13 gi|330508596|ref|YP_004385024.1| - 0.01 16.0 0.1 0.028 14.7 0.1 1.8 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase RsgA_GTPase PF03193.16 gi|330508596|ref|YP_004385024.1| - 0.011 15.6 0.0 0.11 12.3 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase Dynamin_N PF00350.23 gi|330508596|ref|YP_004385024.1| - 0.015 15.4 0.1 0.16 12.0 0.0 2.1 1 1 1 2 2 2 0 Dynamin family AAA_24 PF13479.6 gi|330508596|ref|YP_004385024.1| - 0.12 12.0 0.1 0.24 11.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|330508596|ref|YP_004385024.1| - 0.15 11.8 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|330508596|ref|YP_004385024.1| - 0.21 11.0 0.0 0.32 10.4 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit MS_channel PF00924.18 gi|330508597|ref|YP_004385025.1| - 6.1e-38 130.4 0.2 6.1e-38 130.4 0.2 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel Sm_multidrug_ex PF06695.11 gi|330508597|ref|YP_004385025.1| - 0.045 14.4 2.6 0.09 13.4 2.6 1.5 1 0 0 1 1 1 0 Putative small multi-drug export protein CorA PF01544.18 gi|330508598|ref|YP_004385026.1| - 9.7e-76 254.9 1.0 1.3e-75 254.4 1.0 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein ACR_tran PF00873.19 gi|330508598|ref|YP_004385026.1| - 0.0056 14.4 0.1 0.0072 14.0 0.1 1.1 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family CopD PF05425.13 gi|330508598|ref|YP_004385026.1| - 0.064 13.7 0.7 0.1 13.0 0.7 1.3 1 0 0 1 1 1 0 Copper resistance protein D Nramp PF01566.18 gi|330508599|ref|YP_004385027.1| - 1.3e-96 323.8 24.1 1.3e-96 323.8 24.1 1.4 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein MgtE_N PF03448.17 gi|330508600|ref|YP_004385028.1| - 2.5e-28 98.6 10.8 3e-28 98.4 8.9 1.9 2 0 0 2 2 2 1 MgtE intracellular N domain CBS PF00571.28 gi|330508600|ref|YP_004385028.1| - 1.3e-19 70.4 5.5 3.9e-09 36.8 0.3 4.9 5 1 0 5 5 5 2 CBS domain FliG_M PF14841.6 gi|330508600|ref|YP_004385028.1| - 1.4e-05 25.2 1.3 0.028 14.6 0.0 3.5 2 1 2 4 4 4 2 FliG middle domain PRC PF05239.16 gi|330508600|ref|YP_004385028.1| - 0.00034 20.6 3.6 0.012 15.6 0.1 3.7 4 0 0 4 4 4 1 PRC-barrel domain FliG_N PF14842.6 gi|330508600|ref|YP_004385028.1| - 0.0045 17.5 6.1 0.53 10.9 0.3 3.3 2 1 1 3 3 3 2 FliG N-terminal domain hnRNP_Q_AcD PF18360.1 gi|330508600|ref|YP_004385028.1| - 0.016 15.1 0.5 0.086 12.8 0.3 2.4 1 1 1 2 2 2 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain AsnC_trans_reg PF01037.21 gi|330508601|ref|YP_004385029.1| - 7.1e-16 57.9 0.1 2.2e-15 56.4 0.1 1.8 1 1 1 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|330508601|ref|YP_004385029.1| - 2.1e-12 46.4 0.3 3.5e-12 45.7 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|330508601|ref|YP_004385029.1| - 1.7e-11 43.7 1.6 2.9e-11 43.0 1.6 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|330508601|ref|YP_004385029.1| - 1.6e-05 24.7 0.1 2.6e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|330508601|ref|YP_004385029.1| - 0.0003 20.8 0.0 0.00053 20.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|330508601|ref|YP_004385029.1| - 0.00045 20.1 0.1 0.00081 19.3 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|330508601|ref|YP_004385029.1| - 0.00059 19.7 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|330508601|ref|YP_004385029.1| - 0.001 18.7 0.1 0.0023 17.6 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.10 gi|330508601|ref|YP_004385029.1| - 0.0015 18.3 0.0 0.0029 17.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|330508601|ref|YP_004385029.1| - 0.003 18.0 0.1 0.0057 17.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|330508601|ref|YP_004385029.1| - 0.0031 17.4 0.1 0.0057 16.6 0.1 1.4 1 0 0 1 1 1 1 HTH domain HxlR PF01638.17 gi|330508601|ref|YP_004385029.1| - 0.0043 16.9 0.0 0.0087 15.9 0.0 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Fe_dep_repress PF01325.19 gi|330508601|ref|YP_004385029.1| - 0.0052 17.0 0.0 0.0094 16.1 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HemN_C PF06969.16 gi|330508601|ref|YP_004385029.1| - 0.0079 16.2 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 1 HemN C-terminal domain HTH_Crp_2 PF13545.6 gi|330508601|ref|YP_004385029.1| - 0.0085 16.0 0.4 0.016 15.2 0.4 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|330508601|ref|YP_004385029.1| - 0.016 15.1 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|330508601|ref|YP_004385029.1| - 0.051 13.3 0.4 0.096 12.4 0.4 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|330508601|ref|YP_004385029.1| - 0.053 13.3 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|330508601|ref|YP_004385029.1| - 0.059 13.2 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 LexA DNA binding domain AsnC_trans_reg2 PF17805.1 gi|330508601|ref|YP_004385029.1| - 0.06 13.5 0.1 0.37 11.0 0.0 1.9 2 0 0 2 2 2 0 AsnC-like ligand binding domain HTH_Tnp_IS630 PF01710.16 gi|330508601|ref|YP_004385029.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Transposase HTH_41 PF14502.6 gi|330508601|ref|YP_004385029.1| - 0.15 11.8 0.1 0.48 10.1 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain AhpC-TSA PF00578.21 gi|330508603|ref|YP_004385031.1| - 4.9e-39 133.1 0.0 5.9e-39 132.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|330508603|ref|YP_004385031.1| - 1.7e-18 66.7 0.0 2.1e-18 66.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|330508603|ref|YP_004385031.1| - 4e-05 23.7 0.0 0.021 14.9 0.0 2.1 1 1 1 2 2 2 2 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|330508603|ref|YP_004385031.1| - 0.17 11.4 0.0 0.2 11.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) SCO1-SenC PF02630.14 gi|330508603|ref|YP_004385031.1| - 0.17 11.8 0.0 0.31 10.9 0.0 1.5 1 1 0 1 1 1 0 SCO1/SenC DUF4352 PF11611.8 gi|330508604|ref|YP_004385032.1| - 0.04 14.2 0.0 2.5 8.4 0.0 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4352) tRNA-synt_1g PF09334.11 gi|330508605|ref|YP_004385033.1| - 2.7e-147 490.6 0.0 3.5e-147 490.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|330508605|ref|YP_004385033.1| - 6.3e-25 87.1 1.0 1.4e-24 86.1 0.6 1.8 2 0 0 2 2 2 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|330508605|ref|YP_004385033.1| - 6.6e-18 64.3 0.2 1.1e-07 30.5 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|330508605|ref|YP_004385033.1| - 2.9e-15 56.5 0.0 6.2e-15 55.5 0.0 1.6 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|330508605|ref|YP_004385033.1| - 1.3e-13 51.0 0.0 2.3e-07 30.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|330508605|ref|YP_004385033.1| - 0.00039 19.4 0.0 0.77 8.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) DZR PF12773.7 gi|330508605|ref|YP_004385033.1| - 0.33 11.0 7.4 1.1 9.4 7.4 1.9 1 1 0 1 1 1 0 Double zinc ribbon ABC_tran PF00005.27 gi|330508606|ref|YP_004385034.1| - 3.7e-51 173.2 0.0 4.8e-26 91.9 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|330508606|ref|YP_004385034.1| - 2.9e-11 43.8 0.6 0.012 15.5 0.0 4.1 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|330508606|ref|YP_004385034.1| - 1.4e-08 34.9 0.3 0.006 16.5 0.0 2.7 3 0 0 3 3 2 2 RsgA GTPase AAA_29 PF13555.6 gi|330508606|ref|YP_004385034.1| - 1.3e-06 28.1 1.1 0.014 15.2 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain TniB PF05621.11 gi|330508606|ref|YP_004385034.1| - 5.9e-05 22.6 2.7 0.081 12.3 0.0 3.6 4 0 0 4 4 4 2 Bacterial TniB protein AAA_22 PF13401.6 gi|330508606|ref|YP_004385034.1| - 6e-05 23.3 3.3 0.41 10.9 0.1 4.1 3 1 0 3 3 3 1 AAA domain SMC_N PF02463.19 gi|330508606|ref|YP_004385034.1| - 0.00038 19.9 5.0 0.037 13.5 0.1 3.6 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|330508606|ref|YP_004385034.1| - 0.0013 19.3 3.6 0.55 10.7 1.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|330508606|ref|YP_004385034.1| - 0.0015 18.8 0.0 1.7 8.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|330508606|ref|YP_004385034.1| - 0.0031 17.5 0.0 0.084 12.8 0.0 2.5 2 0 0 2 2 2 1 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|330508606|ref|YP_004385034.1| - 0.0033 17.2 0.1 1.9 8.2 0.0 3.0 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|330508606|ref|YP_004385034.1| - 0.0038 16.8 1.4 22 4.5 0.0 4.5 5 1 0 5 5 5 0 AAA domain AAA_30 PF13604.6 gi|330508606|ref|YP_004385034.1| - 0.0044 16.8 1.9 0.35 10.6 0.3 3.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|330508606|ref|YP_004385034.1| - 0.0094 16.3 0.0 4.8 7.5 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain DUF4358 PF14270.6 gi|330508606|ref|YP_004385034.1| - 0.028 14.7 0.2 5.5 7.3 0.5 2.9 3 0 0 3 3 2 0 Domain of unknown function (DUF4358) AAA_18 PF13238.6 gi|330508606|ref|YP_004385034.1| - 0.028 15.0 0.1 1.5 9.3 0.0 3.2 3 0 0 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|330508606|ref|YP_004385034.1| - 0.028 13.6 0.2 1.2 8.3 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain PduV-EutP PF10662.9 gi|330508606|ref|YP_004385034.1| - 0.033 13.9 0.2 3 7.6 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation RNA_helicase PF00910.22 gi|330508606|ref|YP_004385034.1| - 0.037 14.4 0.0 6.6 7.2 0.0 2.5 2 0 0 2 2 2 0 RNA helicase Roc PF08477.13 gi|330508606|ref|YP_004385034.1| - 0.039 14.2 0.3 8.6 6.6 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase MobB PF03205.14 gi|330508606|ref|YP_004385034.1| - 0.056 13.3 1.6 9.7 6.1 0.1 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|330508606|ref|YP_004385034.1| - 0.079 13.1 3.2 0.64 10.1 0.0 3.1 3 1 0 3 3 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|330508606|ref|YP_004385034.1| - 0.084 13.1 6.2 0.44 10.8 0.1 4.0 4 2 0 4 4 2 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|330508606|ref|YP_004385034.1| - 0.12 12.1 1.2 8 6.1 1.1 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|330508606|ref|YP_004385034.1| - 0.12 12.5 0.5 10 6.3 0.0 2.8 3 0 0 3 3 3 0 AAA domain dNK PF01712.19 gi|330508606|ref|YP_004385034.1| - 0.13 12.1 1.5 7.2 6.4 0.0 3.0 3 0 0 3 3 3 0 Deoxynucleoside kinase PhoH PF02562.16 gi|330508606|ref|YP_004385034.1| - 0.13 11.7 0.1 6.6 6.1 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein PRK PF00485.18 gi|330508606|ref|YP_004385034.1| - 0.15 11.7 0.4 3.6 7.3 0.4 2.6 2 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family G-alpha PF00503.20 gi|330508606|ref|YP_004385034.1| - 0.22 10.6 0.0 12 4.9 0.0 2.2 2 0 0 2 2 2 0 G-protein alpha subunit NACHT PF05729.12 gi|330508606|ref|YP_004385034.1| - 1.2 9.0 3.7 28 4.6 0.1 2.6 2 0 0 2 2 2 0 NACHT domain ABC_ATPase PF09818.9 gi|330508606|ref|YP_004385034.1| - 1.2 7.8 3.1 32 3.1 0.1 3.6 4 1 0 4 4 4 0 Predicted ATPase of the ABC class tRNA_anti-codon PF01336.25 gi|330508607|ref|YP_004385035.1| - 4.5e-22 77.8 5.4 4.6e-09 36.1 0.1 3.5 3 1 0 3 3 3 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|330508607|ref|YP_004385035.1| - 3.5e-13 49.8 0.0 2.7e-06 27.3 0.0 3.1 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|330508607|ref|YP_004385035.1| - 2.7e-12 46.5 0.0 0.0032 17.3 0.0 3.2 3 0 0 3 3 3 3 Replication protein A OB domain tRNA_anti_2 PF13742.6 gi|330508607|ref|YP_004385035.1| - 0.061 13.5 0.0 41 4.5 0.0 3.2 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain MlaD PF02470.20 gi|330508607|ref|YP_004385035.1| - 0.078 13.3 0.2 46 4.4 0.0 3.3 3 0 0 3 3 3 0 MlaD protein PRC PF05239.16 gi|330508607|ref|YP_004385035.1| - 0.097 12.8 1.5 3.7 7.7 0.1 3.0 3 0 0 3 3 3 0 PRC-barrel domain Rep_fac-A_C PF08646.10 gi|330508607|ref|YP_004385035.1| - 0.1 12.4 0.0 23 4.7 0.0 2.8 3 0 0 3 3 3 0 Replication factor-A C terminal domain UvrB_inter PF17757.1 gi|330508607|ref|YP_004385035.1| - 0.16 12.2 0.0 14 6.0 0.0 3.1 3 0 0 3 3 3 0 UvrB interaction domain Rad51 PF08423.11 gi|330508608|ref|YP_004385036.1| - 8e-82 274.3 0.0 9.7e-82 274.1 0.0 1.0 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|330508608|ref|YP_004385036.1| - 2.9e-13 50.2 1.3 6.8e-13 49.0 1.3 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|330508608|ref|YP_004385036.1| - 7.4e-11 42.0 0.1 8.3e-05 22.2 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|330508608|ref|YP_004385036.1| - 2.2e-08 33.9 0.0 3.3e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain HHH PF00633.23 gi|330508608|ref|YP_004385036.1| - 1.8e-06 27.5 4.7 0.0017 18.2 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif ATPase PF06745.13 gi|330508608|ref|YP_004385036.1| - 4e-06 26.4 0.1 7.5e-06 25.5 0.1 1.4 1 1 0 1 1 1 1 KaiC HHH_2 PF12826.7 gi|330508608|ref|YP_004385036.1| - 5.1e-06 26.5 0.3 1.3e-05 25.2 0.3 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|330508608|ref|YP_004385036.1| - 8.5e-06 25.9 0.0 1.5e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus AAA PF00004.29 gi|330508608|ref|YP_004385036.1| - 9.8e-05 22.8 0.0 0.00028 21.3 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol_lambd_f PF10391.9 gi|330508608|ref|YP_004385036.1| - 0.00035 20.3 0.0 0.0029 17.4 0.0 2.4 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda AAA_24 PF13479.6 gi|330508608|ref|YP_004385036.1| - 0.001 18.9 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain IMS_HHH PF11798.8 gi|330508608|ref|YP_004385036.1| - 0.015 15.6 0.0 0.057 13.8 0.0 2.1 1 0 0 1 1 1 0 IMS family HHH motif HHH_3 PF12836.7 gi|330508608|ref|YP_004385036.1| - 0.027 14.7 0.3 6.7 7.0 0.1 3.3 1 1 2 3 3 3 0 Helix-hairpin-helix motif Ntox34 PF15606.6 gi|330508608|ref|YP_004385036.1| - 0.034 14.3 0.1 0.15 12.2 0.1 1.9 2 0 0 2 2 2 0 Bacterial toxin 34 ATP-synt_ab PF00006.25 gi|330508608|ref|YP_004385036.1| - 0.037 13.7 0.0 0.12 12.0 0.0 1.8 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain CobU PF02283.16 gi|330508608|ref|YP_004385036.1| - 0.044 13.3 0.0 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase NB-ARC PF00931.22 gi|330508608|ref|YP_004385036.1| - 0.06 12.5 0.1 2.3 7.3 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain HHH_8 PF14716.6 gi|330508608|ref|YP_004385036.1| - 0.075 13.4 0.3 0.91 9.9 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain BAF PF02961.14 gi|330508608|ref|YP_004385036.1| - 0.08 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 Barrier to autointegration factor TsaE PF02367.17 gi|330508608|ref|YP_004385036.1| - 0.098 12.7 0.2 0.23 11.5 0.1 1.6 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 gi|330508608|ref|YP_004385036.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|330508608|ref|YP_004385036.1| - 0.15 12.7 0.1 1.2 9.7 0.0 2.3 1 1 0 1 1 1 0 AAA domain NosD PF05048.13 gi|330508609|ref|YP_004385037.1| - 5.3e-21 75.0 32.0 6.3e-12 45.3 15.6 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|330508609|ref|YP_004385037.1| - 2.7e-20 72.8 41.4 1.1e-10 41.6 20.0 3.1 1 1 1 2 2 2 2 Right handed beta helix region DUF2114 PF09887.9 gi|330508610|ref|YP_004385038.1| - 1.4e-223 742.4 1.9 1.6e-223 742.2 1.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Borealin PF10512.9 gi|330508610|ref|YP_004385038.1| - 0.023 14.7 0.1 0.045 13.7 0.1 1.4 1 0 0 1 1 1 0 Cell division cycle-associated protein 8 DNA_primase_lrg PF04104.14 gi|330508611|ref|YP_004385039.1| - 1.8e-06 27.6 0.1 4.3e-06 26.3 0.1 1.7 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit zf-UDP PF14569.6 gi|330508611|ref|YP_004385039.1| - 0.011 15.8 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding RING-finger Y_Y_Y PF07495.13 gi|330508612|ref|YP_004385040.1| - 0.036 14.0 0.0 0.1 12.5 0.0 1.8 1 0 0 1 1 1 0 Y_Y_Y domain ChpA-C PF03777.13 gi|330508612|ref|YP_004385040.1| - 0.047 13.6 2.9 1.8 8.5 0.3 2.6 2 0 0 2 2 2 0 ChpA-C Acylphosphatase PF00708.18 gi|330508613|ref|YP_004385041.1| - 9e-18 64.5 0.5 3.6e-17 62.5 0.0 2.2 2 1 1 3 3 3 1 Acylphosphatase Apolipoprotein PF01442.18 gi|330508613|ref|YP_004385041.1| - 1.4e-05 25.1 0.6 4.5e-05 23.4 0.5 1.7 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 gi|330508613|ref|YP_004385041.1| - 0.00062 19.8 7.9 0.01 15.9 4.5 2.7 2 1 1 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus CdvA PF18822.1 gi|330508613|ref|YP_004385041.1| - 0.00076 19.3 5.1 0.086 12.7 1.5 3.2 2 1 1 3 3 3 1 CdvA-like coiled-coil domain DUF5446 PF17522.2 gi|330508613|ref|YP_004385041.1| - 0.0066 16.6 6.7 0.036 14.2 0.8 3.1 1 1 2 3 3 3 1 Family of unknown function (DUF5446) ApoLp-III PF07464.11 gi|330508613|ref|YP_004385041.1| - 0.0081 16.3 2.8 0.014 15.5 2.8 1.4 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) DUF4164 PF13747.6 gi|330508613|ref|YP_004385041.1| - 0.014 15.7 4.0 0.19 12.0 2.2 3.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) DUF1359 PF07097.11 gi|330508613|ref|YP_004385041.1| - 0.017 15.4 5.4 0.025 14.8 4.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1359) HSBP1 PF06825.12 gi|330508613|ref|YP_004385041.1| - 0.018 14.9 13.3 9 6.2 9.5 3.5 2 1 0 2 2 2 0 Heat shock factor binding protein 1 YtxH PF12732.7 gi|330508613|ref|YP_004385041.1| - 0.02 15.4 3.7 0.61 10.7 3.7 2.7 1 1 0 1 1 1 0 YtxH-like protein Fzo_mitofusin PF04799.13 gi|330508613|ref|YP_004385041.1| - 0.021 14.4 2.5 0.3 10.6 0.4 2.2 1 1 1 2 2 2 0 fzo-like conserved region DUF1640 PF07798.11 gi|330508613|ref|YP_004385041.1| - 0.021 14.9 7.1 0.034 14.2 7.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) DUF4455 PF14643.6 gi|330508613|ref|YP_004385041.1| - 0.033 12.9 3.5 0.091 11.4 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4455) Exonuc_VII_L PF02601.15 gi|330508613|ref|YP_004385041.1| - 0.036 13.7 0.9 0.045 13.3 0.9 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF2703 PF10865.8 gi|330508613|ref|YP_004385041.1| - 0.038 14.2 0.6 1.3 9.3 0.1 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF2703) DUF3450 PF11932.8 gi|330508613|ref|YP_004385041.1| - 0.048 13.0 5.7 0.074 12.3 5.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF1664 PF07889.12 gi|330508613|ref|YP_004385041.1| - 0.053 13.6 9.2 0.49 10.4 7.8 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TBCA PF02970.16 gi|330508613|ref|YP_004385041.1| - 0.055 13.8 5.7 0.71 10.2 2.4 2.6 1 1 1 2 2 2 0 Tubulin binding cofactor A UPF0242 PF06785.11 gi|330508613|ref|YP_004385041.1| - 0.059 13.5 5.7 0.16 12.0 5.7 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Phasin PF05597.11 gi|330508613|ref|YP_004385041.1| - 0.059 13.4 2.8 2.8 7.9 0.1 2.5 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Fib_alpha PF08702.10 gi|330508613|ref|YP_004385041.1| - 0.1 12.8 5.9 0.17 12.0 5.9 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Prominin PF05478.11 gi|330508613|ref|YP_004385041.1| - 0.12 10.3 3.7 0.15 10.0 3.7 1.1 1 0 0 1 1 1 0 Prominin BLOC1_2 PF10046.9 gi|330508613|ref|YP_004385041.1| - 0.13 12.5 7.9 5.5 7.4 2.9 3.1 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FliT PF05400.13 gi|330508613|ref|YP_004385041.1| - 0.25 12.2 2.8 0.77 10.6 2.0 2.1 1 1 1 2 2 2 0 Flagellar protein FliT YojJ PF10372.9 gi|330508613|ref|YP_004385041.1| - 0.3 11.2 3.7 7.6 6.7 0.3 2.8 2 1 1 3 3 3 0 Bacterial membrane-spanning protein N-terminus T3SS_basalb_I PF17001.5 gi|330508613|ref|YP_004385041.1| - 0.33 11.6 4.7 0.41 11.3 2.4 2.2 1 1 1 2 2 2 0 Type III secretion basal body protein I, YscI, HrpB, PscI Tht1 PF04163.12 gi|330508613|ref|YP_004385041.1| - 0.43 9.3 6.3 0.53 9.0 6.3 1.1 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein Syntaxin_2 PF14523.6 gi|330508613|ref|YP_004385041.1| - 0.54 10.7 7.7 1.5 9.3 7.7 1.8 1 1 0 1 1 1 0 Syntaxin-like protein FlaC_arch PF05377.11 gi|330508613|ref|YP_004385041.1| - 1.3 9.5 13.4 14 6.2 0.4 4.9 1 1 4 5 5 5 0 Flagella accessory protein C (FlaC) DUF1283 PF06932.11 gi|330508613|ref|YP_004385041.1| - 2.2 8.6 4.9 3.9 7.7 0.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1283) FAM76 PF16046.5 gi|330508613|ref|YP_004385041.1| - 3.2 7.0 5.4 4.2 6.6 5.4 1.2 1 0 0 1 1 1 0 FAM76 protein Herpes_UL14 PF03580.14 gi|330508613|ref|YP_004385041.1| - 3.3 7.9 6.7 12 6.1 2.0 2.6 1 1 1 2 2 2 0 Herpesvirus UL14-like protein DDE_Tnp_IS66 PF03050.14 gi|330508614|ref|YP_004385042.1| - 9.4e-48 163.1 0.0 1.5e-47 162.4 0.0 1.3 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.7 gi|330508614|ref|YP_004385042.1| - 1.1e-05 25.7 4.6 1.1e-05 25.7 4.6 2.1 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 Med1 PF10744.9 gi|330508614|ref|YP_004385042.1| - 0.00029 20.0 0.0 0.00038 19.6 0.0 1.1 1 0 0 1 1 1 1 Mediator of RNA polymerase II transcription subunit 1 DZR PF12773.7 gi|330508614|ref|YP_004385042.1| - 0.0018 18.2 0.5 0.0044 17.0 0.5 1.6 1 1 0 1 1 1 1 Double zinc ribbon DDE_Tnp_IS240 PF13610.6 gi|330508614|ref|YP_004385042.1| - 0.002 18.4 0.0 0.0045 17.2 0.0 1.7 1 0 0 1 1 1 1 DDE domain ZapB PF06005.12 gi|330508614|ref|YP_004385042.1| - 0.15 12.5 4.1 0.2 12.1 2.7 1.9 2 0 0 2 2 2 0 Cell division protein ZapB DivIC PF04977.15 gi|330508614|ref|YP_004385042.1| - 0.26 11.1 2.6 0.72 9.7 2.6 1.7 1 0 0 1 1 1 0 Septum formation initiator MCC-bdg_PDZ PF10506.9 gi|330508614|ref|YP_004385042.1| - 0.64 10.1 4.5 0.31 11.1 2.1 1.8 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome zinc_ribbon_2 PF13240.6 gi|330508614|ref|YP_004385042.1| - 2.2 8.1 6.5 2.4 8.0 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HALZ PF02183.18 gi|330508614|ref|YP_004385042.1| - 2.4 8.5 6.6 3.2 8.0 3.3 2.4 2 0 0 2 2 2 0 Homeobox associated leucine zipper zf-ribbon_3 PF13248.6 gi|330508614|ref|YP_004385042.1| - 3.2 7.3 6.9 6.4 6.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DEAD PF00270.29 gi|330508615|ref|YP_004385043.1| - 1.6e-21 76.8 0.0 3.5e-21 75.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|330508615|ref|YP_004385043.1| - 2.3e-13 50.4 0.0 8.3e-13 48.6 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|330508615|ref|YP_004385043.1| - 1.2e-07 31.9 0.0 2.1e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DSHCT PF08148.12 gi|330508615|ref|YP_004385043.1| - 0.0083 15.8 0.0 0.037 13.7 0.0 2.2 2 0 0 2 2 2 1 DSHCT (NUC185) domain K-box PF01486.17 gi|330508615|ref|YP_004385043.1| - 0.059 13.6 0.1 0.23 11.6 0.1 2.0 1 0 0 1 1 1 0 K-box region CcmH PF03918.14 gi|330508615|ref|YP_004385043.1| - 0.079 12.2 0.0 0.22 10.8 0.0 1.7 1 0 0 1 1 1 0 Cytochrome C biogenesis protein AAA_34 PF13872.6 gi|330508615|ref|YP_004385043.1| - 0.1 11.5 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 MarR_2 PF12802.7 gi|330508616|ref|YP_004385044.1| - 1.6e-08 34.3 0.0 4.4e-08 32.9 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|330508616|ref|YP_004385044.1| - 4.2e-08 32.6 0.1 9.5e-08 31.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|330508616|ref|YP_004385044.1| - 1e-05 25.4 0.1 3.3e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|330508616|ref|YP_004385044.1| - 5.4e-05 23.1 0.5 0.00032 20.6 0.0 2.4 3 0 0 3 3 2 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|330508616|ref|YP_004385044.1| - 0.00015 22.2 0.0 0.00039 20.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_3 PF01381.22 gi|330508616|ref|YP_004385044.1| - 0.00063 19.8 0.0 0.0014 18.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_11 PF08279.12 gi|330508616|ref|YP_004385044.1| - 0.0012 18.8 0.0 0.0035 17.2 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.6 gi|330508616|ref|YP_004385044.1| - 0.0017 18.3 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.10 gi|330508616|ref|YP_004385044.1| - 0.0019 17.9 0.0 0.0046 16.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|330508616|ref|YP_004385044.1| - 0.0054 17.0 0.0 0.018 15.4 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator Mnd1 PF03962.15 gi|330508616|ref|YP_004385044.1| - 0.0074 16.6 0.0 0.024 14.9 0.0 1.8 1 0 0 1 1 1 1 Mnd1 HTH domain HTH_23 PF13384.6 gi|330508616|ref|YP_004385044.1| - 0.013 15.3 0.0 0.028 14.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|330508616|ref|YP_004385044.1| - 0.016 15.4 0.1 0.054 13.7 0.0 1.9 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|330508616|ref|YP_004385044.1| - 0.016 14.8 0.2 0.053 13.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MerR_1 PF13411.6 gi|330508616|ref|YP_004385044.1| - 0.019 15.1 0.0 0.038 14.1 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein DUF4364 PF14277.6 gi|330508616|ref|YP_004385044.1| - 0.021 14.5 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|330508616|ref|YP_004385044.1| - 0.029 14.3 0.1 0.091 12.7 0.1 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.6 gi|330508616|ref|YP_004385044.1| - 0.051 13.7 0.1 0.14 12.3 0.1 1.7 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_28 PF13518.6 gi|330508616|ref|YP_004385044.1| - 0.053 13.7 0.1 0.28 11.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|330508616|ref|YP_004385044.1| - 0.069 13.0 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family YdaS_antitoxin PF15943.5 gi|330508616|ref|YP_004385044.1| - 0.082 12.8 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT P22_Cro PF14549.6 gi|330508616|ref|YP_004385044.1| - 0.086 12.7 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_13 PF11972.8 gi|330508616|ref|YP_004385044.1| - 0.099 12.7 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Mga PF08280.11 gi|330508616|ref|YP_004385044.1| - 0.12 12.4 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain ArsR PF09824.9 gi|330508617|ref|YP_004385045.1| - 6.4e-66 220.8 0.0 7.3e-66 220.7 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_20 PF12840.7 gi|330508617|ref|YP_004385045.1| - 0.0018 18.3 0.0 0.0055 16.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|330508617|ref|YP_004385045.1| - 0.042 13.7 0.0 2.4 8.1 0.0 2.4 2 0 0 2 2 2 0 MarR family DUF1598 PF07643.11 gi|330508617|ref|YP_004385045.1| - 0.12 12.6 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1598) KH_7 PF17214.3 gi|330508618|ref|YP_004385046.1| - 9.3e-28 96.0 6.7 5.3e-27 93.6 0.6 3.2 3 0 0 3 3 3 1 KH domain Beta-Casp PF10996.8 gi|330508618|ref|YP_004385046.1| - 2.1e-24 85.9 0.0 6.2e-24 84.4 0.0 1.8 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.27 gi|330508618|ref|YP_004385046.1| - 8.4e-15 55.3 0.5 4.1e-14 53.0 0.5 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|330508618|ref|YP_004385046.1| - 1.1e-14 54.1 0.0 2.2e-14 53.1 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|330508618|ref|YP_004385046.1| - 4.5e-12 45.8 0.0 8.4e-12 44.9 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|330508618|ref|YP_004385046.1| - 1.4e-09 37.7 0.1 3.8e-09 36.4 0.1 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|330508618|ref|YP_004385046.1| - 0.0002 21.1 0.3 0.0077 16.0 0.0 3.0 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|330508618|ref|YP_004385046.1| - 0.00028 20.8 0.0 0.00074 19.4 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|330508618|ref|YP_004385046.1| - 0.0018 18.1 0.1 0.0051 16.7 0.1 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|330508618|ref|YP_004385046.1| - 0.058 13.2 0.1 0.18 11.7 0.1 1.8 1 0 0 1 1 1 0 KH domain Proteasome PF00227.26 gi|330508619|ref|YP_004385047.1| - 1.9e-53 180.8 1.0 2.2e-53 180.6 1.0 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF63 PF01889.17 gi|330508620|ref|YP_004385048.1| - 1.2e-98 330.7 8.6 1.3e-98 330.5 8.6 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DDE_Tnp_ISAZ013 PF07592.11 gi|330508622|ref|YP_004385050.1| - 3.9e-141 469.4 0.0 4.6e-141 469.2 0.0 1.0 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain HTH_Tnp_Tc3_2 PF01498.18 gi|330508622|ref|YP_004385050.1| - 2.8e-06 27.5 0.0 8.9e-06 25.9 0.0 1.9 1 0 0 1 1 1 1 Transposase HTH_21 PF13276.6 gi|330508622|ref|YP_004385050.1| - 0.00039 20.5 0.0 0.00091 19.3 0.0 1.6 1 0 0 1 1 1 1 HTH-like domain GSH-S_N PF02951.14 gi|330508622|ref|YP_004385050.1| - 0.0024 18.0 0.0 0.0038 17.3 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain HTH_32 PF13565.6 gi|330508622|ref|YP_004385050.1| - 0.0042 17.7 0.1 0.011 16.3 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain UPF0236 PF06782.11 gi|330508622|ref|YP_004385050.1| - 0.012 14.3 0.0 0.02 13.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0236) HTH_33 PF13592.6 gi|330508622|ref|YP_004385050.1| - 0.02 14.5 0.3 0.073 12.7 0.1 2.0 2 1 1 3 3 3 0 Winged helix-turn helix HTH_12 PF08461.10 gi|330508622|ref|YP_004385050.1| - 0.031 14.2 0.4 0.11 12.4 0.1 2.1 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_29 PF13551.6 gi|330508622|ref|YP_004385050.1| - 0.058 13.4 0.1 0.62 10.1 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix TPR_12 PF13424.6 gi|330508623|ref|YP_004385051.1| - 2.6e-13 50.0 2.0 2.6e-13 50.0 2.0 2.1 2 0 0 2 2 1 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330508623|ref|YP_004385051.1| - 2.9e-10 39.4 1.1 3.1e-07 30.0 0.3 3.0 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330508623|ref|YP_004385051.1| - 5.8e-10 38.7 0.7 7.4e-05 22.5 0.1 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330508623|ref|YP_004385051.1| - 1.6e-08 34.0 1.3 7.3e-08 31.9 0.2 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330508623|ref|YP_004385051.1| - 1.7e-07 30.8 8.9 8.5e-06 25.4 0.2 4.4 3 2 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330508623|ref|YP_004385051.1| - 2e-06 27.6 1.5 1.5e-05 24.8 0.1 3.0 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330508623|ref|YP_004385051.1| - 0.0026 18.3 3.3 0.099 13.3 0.1 3.9 4 1 0 4 4 3 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330508623|ref|YP_004385051.1| - 0.0045 17.7 10.1 0.0068 17.1 0.2 4.2 4 1 1 5 5 4 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330508623|ref|YP_004385051.1| - 0.015 15.0 0.7 0.015 15.0 0.7 3.1 2 1 1 3 3 3 0 TPR repeat TPR_16 PF13432.6 gi|330508623|ref|YP_004385051.1| - 0.018 15.7 0.8 0.018 15.7 0.8 3.3 4 0 0 4 4 4 0 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|330508623|ref|YP_004385051.1| - 0.031 14.3 0.4 0.26 11.4 0.3 2.4 1 1 0 1 1 1 0 Anaphase-promoting complex subunit 5 APOC4 PF15119.6 gi|330508623|ref|YP_004385051.1| - 0.052 13.8 0.0 0.096 13.0 0.0 1.4 1 0 0 1 1 1 0 Apolipoprotein C4 TPR_4 PF07721.14 gi|330508623|ref|YP_004385051.1| - 1.3 9.9 0.0 1.3 9.9 0.0 4.5 4 1 0 4 4 4 0 Tetratricopeptide repeat HicB_lk_antitox PF15919.5 gi|330508624|ref|YP_004385052.1| - 7.4e-10 39.0 0.0 9.3e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system TPP_enzyme_M PF00205.22 gi|330508624|ref|YP_004385052.1| - 0.091 12.5 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain HicA_toxin PF07927.12 gi|330508625|ref|YP_004385053.1| - 1.1e-17 63.9 0.1 1.3e-17 63.6 0.1 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, DUF1667 PF07892.11 gi|330508625|ref|YP_004385053.1| - 0.059 13.4 0.0 0.074 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1667) Prismane PF03063.20 gi|330508627|ref|YP_004385055.1| - 1.6e-168 561.6 0.3 1.8e-168 561.4 0.3 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family GMC_oxred_N PF00732.19 gi|330508627|ref|YP_004385055.1| - 0.045 13.1 0.2 0.088 12.2 0.2 1.4 1 0 0 1 1 1 0 GMC oxidoreductase Fer4_11 PF13247.6 gi|330508628|ref|YP_004385056.1| - 3.9e-16 59.0 12.7 3.9e-16 59.0 12.7 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330508628|ref|YP_004385056.1| - 7.7e-11 42.0 25.7 7.8e-06 26.0 10.8 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330508628|ref|YP_004385056.1| - 1.3e-10 41.6 31.4 7.9e-05 23.2 10.8 3.0 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330508628|ref|YP_004385056.1| - 3e-09 36.3 35.6 0.00011 21.9 3.9 5.1 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330508628|ref|YP_004385056.1| - 1.2e-06 28.6 32.9 0.022 15.2 4.0 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330508628|ref|YP_004385056.1| - 1.4e-06 28.3 29.1 0.0063 16.6 12.4 2.9 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330508628|ref|YP_004385056.1| - 2.8e-06 27.1 37.3 0.012 15.6 2.8 4.6 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330508628|ref|YP_004385056.1| - 6.1e-06 26.0 32.8 0.0064 16.5 1.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330508628|ref|YP_004385056.1| - 8.6e-06 26.6 27.5 0.31 12.0 2.3 4.6 2 1 3 5 5 5 5 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|330508628|ref|YP_004385056.1| - 6.6e-05 23.0 27.3 0.0039 17.3 9.3 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330508628|ref|YP_004385056.1| - 0.0023 18.4 28.9 0.25 11.9 2.4 4.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330508628|ref|YP_004385056.1| - 0.0076 16.7 26.9 0.27 11.7 8.3 3.4 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fe_dep_repr_C PF02742.15 gi|330508628|ref|YP_004385056.1| - 0.024 14.7 0.1 0.073 13.2 0.1 1.9 1 0 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain Fer4_20 PF14691.6 gi|330508628|ref|YP_004385056.1| - 0.092 12.5 26.6 0.087 12.6 1.3 3.7 1 1 2 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|330508628|ref|YP_004385056.1| - 0.11 13.5 4.5 0.11 13.5 4.5 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain AMP-binding PF00501.28 gi|330508629|ref|YP_004385057.1| - 4.3e-91 305.6 0.0 5.3e-91 305.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330508629|ref|YP_004385057.1| - 2.2e-28 99.0 5.7 1.6e-27 96.2 3.8 2.6 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|330508629|ref|YP_004385057.1| - 4.2e-18 65.0 3.7 4.2e-18 65.0 3.7 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus GvpD PF07088.11 gi|330508630|ref|YP_004385058.1| - 9.4e-37 126.7 0.0 1.9e-33 115.8 0.0 2.4 2 1 0 2 2 2 2 GvpD gas vesicle protein ATPase PF06745.13 gi|330508630|ref|YP_004385058.1| - 5.3e-10 39.0 1.0 2.1e-08 33.8 0.1 2.9 2 1 0 2 2 2 1 KaiC AAA_16 PF13191.6 gi|330508630|ref|YP_004385058.1| - 2.1e-05 25.0 0.0 4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain DnaB_C PF03796.15 gi|330508630|ref|YP_004385058.1| - 0.00013 21.4 0.0 0.26 10.6 0.0 2.4 2 1 0 2 2 2 2 DnaB-like helicase C terminal domain AAA PF00004.29 gi|330508630|ref|YP_004385058.1| - 0.0013 19.2 0.0 0.0036 17.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|330508630|ref|YP_004385058.1| - 0.0013 19.3 0.0 0.0026 18.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|330508630|ref|YP_004385058.1| - 0.0017 18.0 0.0 0.017 14.7 0.0 2.4 3 0 0 3 3 3 1 AAA domain IstB_IS21 PF01695.17 gi|330508630|ref|YP_004385058.1| - 0.0026 17.5 0.0 0.029 14.1 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|330508630|ref|YP_004385058.1| - 0.0048 16.9 0.1 0.02 14.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|330508630|ref|YP_004385058.1| - 0.0054 16.5 0.3 0.019 14.7 0.1 2.0 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|330508630|ref|YP_004385058.1| - 0.0061 15.8 0.0 0.012 14.9 0.0 1.6 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|330508630|ref|YP_004385058.1| - 0.008 15.4 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain PIF1 PF05970.14 gi|330508630|ref|YP_004385058.1| - 0.0085 15.3 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 PIF1-like helicase AAA_22 PF13401.6 gi|330508630|ref|YP_004385058.1| - 0.013 15.8 0.0 0.026 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|330508630|ref|YP_004385058.1| - 0.016 14.4 0.0 0.025 13.8 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_11 PF13086.6 gi|330508630|ref|YP_004385058.1| - 0.021 14.6 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|330508630|ref|YP_004385058.1| - 0.022 15.1 0.3 0.086 13.2 0.3 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|330508630|ref|YP_004385058.1| - 0.023 14.6 0.1 0.052 13.5 0.1 1.6 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.15 gi|330508630|ref|YP_004385058.1| - 0.038 14.0 0.0 0.089 12.8 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit ABC_tran PF00005.27 gi|330508630|ref|YP_004385058.1| - 0.039 14.5 0.0 0.075 13.5 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Viral_helicase1 PF01443.18 gi|330508630|ref|YP_004385058.1| - 0.045 13.5 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_5 PF07728.14 gi|330508630|ref|YP_004385058.1| - 0.045 13.8 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|330508630|ref|YP_004385058.1| - 0.047 13.9 0.0 0.17 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|330508630|ref|YP_004385058.1| - 0.064 12.9 0.0 0.066 12.9 0.0 1.2 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.15 gi|330508630|ref|YP_004385058.1| - 0.094 12.6 0.1 0.24 11.3 0.1 1.7 1 0 0 1 1 1 0 NTPase AAA_7 PF12775.7 gi|330508630|ref|YP_004385058.1| - 0.13 11.7 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|330508630|ref|YP_004385058.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain FaeA PF04703.12 gi|330508631|ref|YP_004385059.1| - 5.1e-05 23.6 0.0 8.5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.6 gi|330508631|ref|YP_004385059.1| - 0.0017 17.9 0.0 0.0027 17.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|330508631|ref|YP_004385059.1| - 0.0019 18.0 0.0 0.0027 17.5 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|330508631|ref|YP_004385059.1| - 0.0041 17.0 0.1 0.0063 16.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|330508631|ref|YP_004385059.1| - 0.0077 16.0 0.1 0.075 12.9 0.0 2.2 3 0 0 3 3 3 1 Homeodomain-like domain HTH_40 PF14493.6 gi|330508631|ref|YP_004385059.1| - 0.0078 16.6 0.0 0.011 16.2 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain LacI PF00356.21 gi|330508631|ref|YP_004385059.1| - 0.0098 15.7 1.5 0.025 14.4 0.6 2.0 1 1 0 2 2 2 1 Bacterial regulatory proteins, lacI family TBPIP PF07106.13 gi|330508631|ref|YP_004385059.1| - 0.037 14.0 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_11 PF08279.12 gi|330508631|ref|YP_004385059.1| - 0.086 12.8 0.3 0.18 11.8 0.0 1.6 2 0 0 2 2 2 0 HTH domain HTH_17 PF12728.7 gi|330508631|ref|YP_004385059.1| - 0.087 13.0 0.2 1.3 9.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.23 gi|330508631|ref|YP_004385059.1| - 0.13 12.1 0.1 0.71 9.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Fe_dep_repress PF01325.19 gi|330508631|ref|YP_004385059.1| - 0.14 12.4 0.8 0.24 11.6 0.8 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MtrA PF04208.14 gi|330508632|ref|YP_004385060.1| - 1.5e-57 194.0 0.0 1.8e-57 193.7 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrH PF02007.18 gi|330508633|ref|YP_004385061.1| - 1.2e-100 336.5 0.0 1.4e-100 336.3 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit DUF521 PF04412.13 gi|330508634|ref|YP_004385062.1| - 5.6e-155 516.0 0.0 6.3e-155 515.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.16 gi|330508635|ref|YP_004385063.1| - 1.8e-34 117.3 0.2 2.4e-34 117.0 0.2 1.1 1 0 0 1 1 1 1 Aconitase X swivel domain DUF3417 PF11897.8 gi|330508636|ref|YP_004385064.1| - 4.9e-35 120.3 0.4 1.4e-34 118.8 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.20 gi|330508636|ref|YP_004385064.1| - 2e-26 92.5 0.0 2.3e-20 72.5 0.0 2.7 2 1 0 2 2 2 2 Carbohydrate phosphorylase DUF2116 PF09889.9 gi|330508638|ref|YP_004385066.1| - 6.2e-11 42.1 1.0 6.6e-11 42.0 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) Tmemb_9 PF05434.11 gi|330508638|ref|YP_004385066.1| - 0.1 12.5 0.2 0.1 12.5 0.2 1.0 1 0 0 1 1 1 0 TMEM9 NosD PF05048.13 gi|330508639|ref|YP_004385067.1| - 2.1e-60 204.0 74.2 1.1e-28 100.1 30.4 4.2 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|330508639|ref|YP_004385067.1| - 1.5e-45 154.8 89.8 4.7e-19 68.8 13.7 4.9 3 1 2 5 5 5 4 Right handed beta helix region Pectinesterase PF01095.19 gi|330508639|ref|YP_004385067.1| - 0.00046 19.0 1.7 0.00093 18.0 0.0 2.3 3 0 0 3 3 3 1 Pectinesterase Sec61_beta PF03911.16 gi|330508640|ref|YP_004385068.1| - 7.7e-15 54.6 0.1 9.1e-15 54.4 0.1 1.1 1 0 0 1 1 1 1 Sec61beta family DoxX PF07681.12 gi|330508640|ref|YP_004385068.1| - 0.025 15.1 0.0 0.027 15.0 0.0 1.1 1 0 0 1 1 1 0 DoxX Pyridoxal_deC PF00282.19 gi|330508641|ref|YP_004385069.1| - 7.5e-31 107.2 0.0 4.7e-30 104.5 0.0 1.9 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|330508641|ref|YP_004385069.1| - 3e-09 36.3 0.0 5.8e-09 35.4 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|330508641|ref|YP_004385069.1| - 5.5e-07 29.1 0.0 4.4e-06 26.1 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|330508641|ref|YP_004385069.1| - 0.006 15.9 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|330508641|ref|YP_004385069.1| - 0.019 14.3 0.0 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family PPDK_N PF01326.19 gi|330508642|ref|YP_004385070.1| - 1.3e-113 379.6 0.4 1.9e-113 379.0 0.4 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|330508642|ref|YP_004385070.1| - 6.5e-86 288.1 0.1 1.3e-85 287.1 0.0 1.5 2 0 0 2 2 2 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|330508642|ref|YP_004385070.1| - 2.8e-25 87.8 2.4 8.3e-25 86.3 2.4 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|330508642|ref|YP_004385070.1| - 0.00027 20.2 0.1 0.00066 18.9 0.1 1.6 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Radical_SAM PF04055.21 gi|330508642|ref|YP_004385070.1| - 0.12 12.8 0.0 9.4 6.6 0.0 2.9 1 1 0 2 2 2 0 Radical SAM superfamily MoeA_N PF03453.17 gi|330508643|ref|YP_004385071.1| - 1.6e-32 112.4 0.1 3.4e-32 111.4 0.1 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|330508643|ref|YP_004385071.1| - 2.4e-24 85.6 0.0 8.1e-24 83.9 0.0 1.9 1 1 1 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|330508643|ref|YP_004385071.1| - 4.6e-14 52.3 2.3 9.7e-14 51.3 0.1 2.7 4 0 0 4 4 4 1 MoeA C-terminal region (domain IV) HTH_20 PF12840.7 gi|330508644|ref|YP_004385072.1| - 1.6e-15 56.9 0.6 1.6e-10 40.8 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|330508644|ref|YP_004385072.1| - 1.2e-13 50.7 0.1 2.1e-08 33.9 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|330508644|ref|YP_004385072.1| - 1.9e-08 34.1 0.3 0.0038 17.1 0.0 2.7 3 0 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|330508644|ref|YP_004385072.1| - 1.7e-06 27.5 0.4 0.05 13.2 0.0 3.6 4 0 0 4 4 4 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|330508644|ref|YP_004385072.1| - 6.3e-05 22.8 0.2 0.07 13.0 0.0 2.4 2 0 0 2 2 2 2 MarR family Fe_dep_repress PF01325.19 gi|330508644|ref|YP_004385072.1| - 0.00014 22.0 0.0 0.4 10.9 0.0 2.6 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|330508644|ref|YP_004385072.1| - 0.00024 21.4 0.0 0.35 11.2 0.0 2.5 2 0 0 2 2 2 2 Transcriptional regulator GntR PF00392.21 gi|330508644|ref|YP_004385072.1| - 0.00024 20.7 0.3 0.82 9.4 0.1 2.7 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family DprA_WH PF17782.1 gi|330508644|ref|YP_004385072.1| - 0.00034 20.7 0.0 0.0012 18.9 0.0 1.9 1 0 0 1 1 1 1 DprA winged helix domain Nup188_C PF18378.1 gi|330508644|ref|YP_004385072.1| - 0.0033 16.3 0.6 0.005 15.7 0.6 1.2 1 0 0 1 1 1 1 Nuclear pore protein NUP188 C-terminal domain HTH_11 PF08279.12 gi|330508644|ref|YP_004385072.1| - 0.0053 16.7 0.1 0.9 9.5 0.0 3.1 3 0 0 3 3 3 1 HTH domain IF2_N PF04760.15 gi|330508644|ref|YP_004385072.1| - 0.0083 15.9 0.1 3.4 7.6 0.0 2.5 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region LexA_DNA_bind PF01726.16 gi|330508644|ref|YP_004385072.1| - 0.015 15.1 0.0 0.048 13.5 0.0 1.9 1 0 0 1 1 1 0 LexA DNA binding domain PadR PF03551.14 gi|330508644|ref|YP_004385072.1| - 0.034 14.1 0.0 0.23 11.5 0.0 2.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.22 gi|330508644|ref|YP_004385072.1| - 0.078 12.9 0.0 1.6 8.7 0.0 2.3 2 0 0 2 2 2 0 MarR family DUF2250 PF10007.9 gi|330508644|ref|YP_004385072.1| - 0.087 12.9 0.0 0.38 10.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF2513 PF10711.9 gi|330508644|ref|YP_004385072.1| - 0.12 12.7 0.1 1.1 9.6 0.0 2.1 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) HTH_27 PF13463.6 gi|330508644|ref|YP_004385072.1| - 0.12 12.8 0.1 4.3 7.9 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain AAA PF00004.29 gi|330508645|ref|YP_004385073.1| - 3.2e-94 312.3 0.0 1.8e-47 161.1 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|330508645|ref|YP_004385073.1| - 2.3e-26 91.3 0.3 3.2e-12 46.1 0.0 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|330508645|ref|YP_004385073.1| - 8.8e-25 86.7 0.0 7.4e-24 83.7 0.1 2.5 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.6 gi|330508645|ref|YP_004385073.1| - 2.8e-15 57.1 0.2 3.6e-07 30.7 0.0 3.0 2 1 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.12 gi|330508645|ref|YP_004385073.1| - 3.7e-13 49.5 0.1 4e-07 29.9 0.0 3.1 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|330508645|ref|YP_004385073.1| - 3.4e-11 42.8 0.5 1.6e-10 40.6 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|330508645|ref|YP_004385073.1| - 1.4e-10 41.6 0.0 0.00034 20.8 0.0 3.0 3 1 0 3 3 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|330508645|ref|YP_004385073.1| - 1.2e-09 37.8 0.2 0.0017 17.6 0.0 3.7 4 0 0 4 4 4 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|330508645|ref|YP_004385073.1| - 1.3e-09 38.4 0.0 0.00034 20.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|330508645|ref|YP_004385073.1| - 5e-09 36.5 4.0 0.041 14.2 0.1 4.4 3 2 1 4 4 3 2 AAA domain AAA_5 PF07728.14 gi|330508645|ref|YP_004385073.1| - 6.8e-09 35.8 1.0 0.0036 17.3 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|330508645|ref|YP_004385073.1| - 2.6e-08 33.9 0.0 0.0073 16.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|330508645|ref|YP_004385073.1| - 1.2e-06 28.4 0.0 0.016 15.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|330508645|ref|YP_004385073.1| - 1.6e-06 28.7 0.0 0.065 13.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|330508645|ref|YP_004385073.1| - 1.1e-05 25.7 0.0 0.22 11.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|330508645|ref|YP_004385073.1| - 2.8e-05 23.8 3.7 5.1 6.6 0.1 4.4 3 1 0 4 4 4 0 AAA domain Mg_chelatase PF01078.21 gi|330508645|ref|YP_004385073.1| - 4.8e-05 22.8 1.1 0.13 11.7 0.1 2.9 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|330508645|ref|YP_004385073.1| - 4.9e-05 23.3 0.0 0.28 11.2 0.0 2.8 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|330508645|ref|YP_004385073.1| - 5.2e-05 23.0 1.0 0.19 11.4 0.0 4.2 4 2 0 4 4 4 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|330508645|ref|YP_004385073.1| - 6.5e-05 22.7 0.0 0.18 11.5 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein ABC_tran PF00005.27 gi|330508645|ref|YP_004385073.1| - 0.00014 22.4 0.0 0.45 11.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_7 PF12775.7 gi|330508645|ref|YP_004385073.1| - 0.00016 21.3 0.0 0.24 10.9 0.0 2.9 3 0 0 3 3 2 2 P-loop containing dynein motor region ATPase PF06745.13 gi|330508645|ref|YP_004385073.1| - 0.00016 21.1 0.2 1.1 8.6 0.0 3.1 2 1 1 3 3 3 2 KaiC DUF815 PF05673.13 gi|330508645|ref|YP_004385073.1| - 0.00025 20.3 0.0 0.052 12.7 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NACHT PF05729.12 gi|330508645|ref|YP_004385073.1| - 0.00051 20.0 0.2 2.8 7.8 0.0 3.7 4 0 0 4 4 4 1 NACHT domain RNA_helicase PF00910.22 gi|330508645|ref|YP_004385073.1| - 0.00058 20.2 0.0 1.7 9.0 0.0 2.5 2 0 0 2 2 2 2 RNA helicase DUF2075 PF09848.9 gi|330508645|ref|YP_004385073.1| - 0.00063 19.1 0.0 0.46 9.7 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|330508645|ref|YP_004385073.1| - 0.0009 19.0 0.0 1.9 8.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|330508645|ref|YP_004385073.1| - 0.00094 18.5 0.0 0.6 9.4 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin Viral_helicase1 PF01443.18 gi|330508645|ref|YP_004385073.1| - 0.0012 18.6 0.0 0.12 12.0 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|330508645|ref|YP_004385073.1| - 0.0013 18.5 0.0 1 9.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|330508645|ref|YP_004385073.1| - 0.0024 17.7 0.0 0.48 10.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|330508645|ref|YP_004385073.1| - 0.0055 17.1 0.0 3.2 8.2 0.0 3.0 3 0 0 3 3 2 1 AAA domain CPT PF07931.12 gi|330508645|ref|YP_004385073.1| - 0.018 14.9 0.0 3.3 7.5 0.0 2.9 3 0 0 3 3 2 0 Chloramphenicol phosphotransferase-like protein AAA_19 PF13245.6 gi|330508645|ref|YP_004385073.1| - 0.023 15.0 2.9 5 7.4 0.3 3.3 3 1 1 4 4 2 0 AAA domain PhoH PF02562.16 gi|330508645|ref|YP_004385073.1| - 0.027 13.9 0.1 1.4 8.3 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein SRPRB PF09439.10 gi|330508645|ref|YP_004385073.1| - 0.031 13.7 0.0 3.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Parvo_NS1 PF01057.17 gi|330508645|ref|YP_004385073.1| - 0.035 13.2 0.3 3.8 6.5 0.0 2.5 3 0 0 3 3 3 0 Parvovirus non-structural protein NS1 Ribosomal_L7Ae PF01248.26 gi|330508645|ref|YP_004385073.1| - 0.057 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NB-ARC PF00931.22 gi|330508645|ref|YP_004385073.1| - 0.086 12.0 0.0 4.2 6.5 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain NTPase_1 PF03266.15 gi|330508645|ref|YP_004385073.1| - 0.089 12.7 0.6 19 5.1 0.0 3.9 3 1 1 4 4 4 0 NTPase Bac_DnaA PF00308.18 gi|330508645|ref|YP_004385073.1| - 0.097 12.5 0.0 22 4.8 0.0 2.9 2 1 0 2 2 2 0 Bacterial dnaA protein Zot PF05707.12 gi|330508645|ref|YP_004385073.1| - 0.1 12.2 0.0 2.5 7.7 0.0 2.6 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) Vps4_C PF09336.10 gi|330508645|ref|YP_004385073.1| - 0.11 12.5 0.3 0.79 9.8 0.1 2.4 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain Lon_C PF05362.13 gi|330508646|ref|YP_004385074.1| - 6.1e-34 117.4 4.3 1e-33 116.7 4.3 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|330508646|ref|YP_004385074.1| - 8.4e-27 94.1 0.0 1.3e-20 73.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|330508646|ref|YP_004385074.1| - 5e-16 58.7 0.0 7.4e-09 35.3 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|330508646|ref|YP_004385074.1| - 1.8e-14 53.8 0.0 2.4e-08 33.9 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|330508646|ref|YP_004385074.1| - 4.9e-13 49.3 0.0 4.7e-05 23.4 0.0 3.6 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|330508646|ref|YP_004385074.1| - 3.4e-09 36.6 0.9 6.7e-09 35.6 0.9 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 gi|330508646|ref|YP_004385074.1| - 3.2e-07 29.7 0.3 0.0077 15.4 0.0 3.2 3 0 0 3 3 3 2 MCM P-loop domain AAA PF00004.29 gi|330508646|ref|YP_004385074.1| - 4.3e-06 27.2 0.0 0.19 12.2 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|330508646|ref|YP_004385074.1| - 6.2e-05 23.3 0.0 0.005 17.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|330508646|ref|YP_004385074.1| - 0.00014 22.0 0.0 0.12 12.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|330508646|ref|YP_004385074.1| - 0.00017 21.4 0.0 0.095 12.4 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_3 PF07726.11 gi|330508646|ref|YP_004385074.1| - 0.0003 20.6 0.0 0.25 11.2 0.0 3.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|330508646|ref|YP_004385074.1| - 0.0006 20.2 0.1 0.013 15.9 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|330508646|ref|YP_004385074.1| - 0.00086 18.9 0.0 0.0057 16.2 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|330508646|ref|YP_004385074.1| - 0.001 19.4 0.0 0.15 12.5 0.0 2.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|330508646|ref|YP_004385074.1| - 0.004 16.9 0.0 0.013 15.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain MCM_lid PF17855.1 gi|330508646|ref|YP_004385074.1| - 0.004 17.5 0.8 0.014 15.8 0.1 2.2 1 1 1 2 2 2 1 MCM AAA-lid domain AAA_10 PF12846.7 gi|330508646|ref|YP_004385074.1| - 0.019 13.9 0.0 0.051 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA-like domain AAA_2 PF07724.14 gi|330508646|ref|YP_004385074.1| - 0.022 14.9 0.1 2.9 8.0 0.0 3.0 3 0 0 3 3 2 0 AAA domain (Cdc48 subfamily) DUF1676 PF07898.13 gi|330508646|ref|YP_004385074.1| - 0.023 14.7 0.2 0.18 11.8 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1676) DUF2101 PF09874.9 gi|330508646|ref|YP_004385074.1| - 0.064 13.0 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) AAA_18 PF13238.6 gi|330508646|ref|YP_004385074.1| - 0.066 13.8 0.0 0.21 12.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|330508646|ref|YP_004385074.1| - 0.083 13.0 0.0 9.5 6.3 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|330508646|ref|YP_004385074.1| - 0.1 13.1 0.0 0.54 10.8 0.0 2.2 2 0 0 2 2 2 0 ABC transporter PmbA_TldD PF01523.16 gi|330508647|ref|YP_004385075.1| - 1.3e-60 205.7 0.1 1.7e-60 205.3 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase SNase PF00565.17 gi|330508648|ref|YP_004385076.1| - 3.1e-05 24.4 0.0 6.8e-05 23.3 0.0 1.6 1 1 0 1 1 1 1 Staphylococcal nuclease homologue VPS13_mid_rpt PF16910.5 gi|330508648|ref|YP_004385076.1| - 0.12 11.7 0.2 0.37 10.2 0.1 1.7 1 1 0 1 1 1 0 Repeating coiled region of VPS13 TRIC PF05197.13 gi|330508649|ref|YP_004385077.1| - 0.0086 15.7 0.1 0.012 15.2 0.1 1.2 1 0 0 1 1 1 1 TRIC channel CbiK PF06180.11 gi|330508650|ref|YP_004385078.1| - 1.9e-54 184.8 0.0 1e-52 179.1 0.0 2.0 1 1 0 1 1 1 1 Cobalt chelatase (CbiK) CbiX PF01903.17 gi|330508650|ref|YP_004385078.1| - 3.4e-08 33.8 0.0 0.00015 22.1 0.0 2.8 2 1 0 2 2 2 2 CbiX CMD PF02627.20 gi|330508651|ref|YP_004385079.1| - 1.5e-15 57.0 0.1 2.1e-15 56.6 0.1 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family FmdE PF02663.14 gi|330508652|ref|YP_004385080.1| - 9.8e-41 138.9 0.0 1.2e-40 138.6 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|330508652|ref|YP_004385080.1| - 1.4e-06 28.1 2.0 2.9e-06 27.1 2.0 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Zn-ribbon_8 PF09723.10 gi|330508652|ref|YP_004385080.1| - 0.044 13.9 0.7 0.11 12.7 0.7 1.7 1 0 0 1 1 1 0 Zinc ribbon domain LIM PF00412.22 gi|330508652|ref|YP_004385080.1| - 0.06 13.6 1.0 0.12 12.6 0.2 1.9 2 0 0 2 2 2 0 LIM domain MarR_2 PF12802.7 gi|330508654|ref|YP_004385082.1| - 1.5e-05 24.8 0.1 3.4e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|330508654|ref|YP_004385082.1| - 0.00025 20.8 0.0 0.00047 19.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|330508654|ref|YP_004385082.1| - 0.00065 19.5 0.2 0.0014 18.4 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|330508654|ref|YP_004385082.1| - 0.003 17.4 0.5 0.0063 16.4 0.5 1.6 1 0 0 1 1 1 1 MarR family Amnionless PF14828.6 gi|330508654|ref|YP_004385082.1| - 0.005 15.7 0.0 0.0066 15.3 0.0 1.1 1 0 0 1 1 1 1 Amnionless HTH_27 PF13463.6 gi|330508654|ref|YP_004385082.1| - 0.0055 17.2 0.4 0.011 16.2 0.4 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|330508654|ref|YP_004385082.1| - 0.0082 16.3 0.1 0.04 14.1 0.1 2.0 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|330508654|ref|YP_004385082.1| - 0.015 14.8 0.9 0.12 11.9 0.4 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2561 PF10812.8 gi|330508654|ref|YP_004385082.1| - 0.025 14.6 0.1 0.037 14.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2561) Phage_TTP_12 PF16461.5 gi|330508654|ref|YP_004385082.1| - 0.053 13.2 0.1 0.086 12.5 0.1 1.2 1 0 0 1 1 1 0 Lambda phage tail tube protein, TTP SMC_ScpB PF04079.16 gi|330508654|ref|YP_004385082.1| - 0.07 12.8 0.5 7.7 6.1 0.0 2.3 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_Crp_2 PF13545.6 gi|330508654|ref|YP_004385082.1| - 0.089 12.8 0.6 0.16 11.9 0.6 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Trans_reg_C PF00486.28 gi|330508654|ref|YP_004385082.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal HTH_20 PF12840.7 gi|330508655|ref|YP_004385083.1| - 9.5e-06 25.6 0.8 1.8e-05 24.7 0.8 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain AAA_assoc_C PF09821.9 gi|330508655|ref|YP_004385083.1| - 0.079 13.5 0.1 0.15 12.6 0.1 1.4 1 1 0 1 1 1 0 C-terminal AAA-associated domain HemN_C PF06969.16 gi|330508655|ref|YP_004385083.1| - 0.081 13.0 0.3 0.12 12.4 0.3 1.4 1 1 0 1 1 1 0 HemN C-terminal domain HTH_5 PF01022.20 gi|330508655|ref|YP_004385083.1| - 0.09 12.7 0.5 0.52 10.2 0.5 2.1 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|330508655|ref|YP_004385083.1| - 0.12 12.4 0.1 0.28 11.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix tRNA_int_endo PF01974.17 gi|330508656|ref|YP_004385084.1| - 1.8e-49 165.7 0.2 1.3e-23 82.8 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|330508656|ref|YP_004385084.1| - 2.6e-39 132.7 0.4 2.1e-20 72.1 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|330508656|ref|YP_004385084.1| - 0.0013 18.9 0.4 0.56 10.4 0.1 2.4 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term APS_kinase PF01583.20 gi|330508658|ref|YP_004385086.1| - 4e-19 69.0 0.3 5.3e-19 68.7 0.3 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|330508658|ref|YP_004385086.1| - 3.8e-06 27.1 0.3 4.9e-06 26.7 0.3 1.2 1 0 0 1 1 1 1 AAA domain CPT PF07931.12 gi|330508658|ref|YP_004385086.1| - 0.00013 21.8 0.0 0.0002 21.2 0.0 1.2 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 gi|330508658|ref|YP_004385086.1| - 0.016 15.7 0.3 0.023 15.3 0.3 1.2 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|330508658|ref|YP_004385086.1| - 0.033 13.6 0.1 0.036 13.5 0.1 1.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Cytidylate_kin2 PF13189.6 gi|330508658|ref|YP_004385086.1| - 0.053 13.7 0.1 0.1 12.7 0.1 1.6 1 1 0 1 1 1 0 Cytidylate kinase-like family MC1 PF05854.11 gi|330508659|ref|YP_004385087.1| - 1.1e-38 131.4 0.5 1.5e-38 131.0 0.5 1.2 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Ribosomal_60s PF00428.19 gi|330508660|ref|YP_004385088.1| - 4e-16 59.4 17.7 4.8e-16 59.1 17.7 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|330508660|ref|YP_004385088.1| - 0.01 16.0 3.7 0.015 15.5 3.7 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain EF-hand_14 PF17959.1 gi|330508660|ref|YP_004385088.1| - 0.22 11.9 0.0 0.33 11.3 0.0 1.3 1 0 0 1 1 1 0 EF-hand domain Adeno_PV PF03910.13 gi|330508660|ref|YP_004385088.1| - 1.5 7.4 7.2 1.9 7.1 7.2 1.0 1 0 0 1 1 1 0 Adenovirus minor core protein PV Ribosomal_L10 PF00466.20 gi|330508661|ref|YP_004385089.1| - 8.1e-22 77.3 0.0 1.6e-21 76.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|330508661|ref|YP_004385089.1| - 4.2e-20 71.5 1.2 1.7e-19 69.6 0.4 2.3 3 0 0 3 3 3 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|330508661|ref|YP_004385089.1| - 3.4e-07 30.7 10.6 7.8e-07 29.6 9.5 2.3 2 0 0 2 2 2 1 60s Acidic ribosomal protein Ribosomal_L1 PF00687.21 gi|330508662|ref|YP_004385090.1| - 1.1e-48 165.7 0.0 1.3e-48 165.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.14 gi|330508663|ref|YP_004385091.1| - 1.6e-21 75.9 0.6 2.5e-21 75.3 0.6 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|330508663|ref|YP_004385091.1| - 2.4e-18 66.4 1.5 8.8e-18 64.6 1.0 1.9 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.13 gi|330508664|ref|YP_004385092.1| - 1.8e-23 82.2 0.1 2.6e-23 81.7 0.1 1.2 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|330508664|ref|YP_004385092.1| - 9e-09 35.0 0.4 1.9e-06 27.6 0.1 2.4 2 0 0 2 2 2 2 KOW motif Glyco_hydro_65C PF03633.15 gi|330508664|ref|YP_004385092.1| - 0.061 13.2 0.3 0.098 12.6 0.3 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain HTH_23 PF13384.6 gi|330508665|ref|YP_004385093.1| - 3.2e-05 23.6 0.0 0.23 11.3 0.0 2.9 2 1 0 2 2 2 2 Homeodomain-like domain GerE PF00196.19 gi|330508665|ref|YP_004385093.1| - 0.00019 20.9 0.0 0.26 10.9 0.0 3.2 3 1 0 3 3 3 2 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|330508665|ref|YP_004385093.1| - 0.00022 20.9 0.0 0.044 13.5 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|330508665|ref|YP_004385093.1| - 0.00052 19.6 0.0 0.056 13.1 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|330508665|ref|YP_004385093.1| - 0.0021 18.1 0.2 0.039 14.0 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix CENP-B_N PF04218.13 gi|330508665|ref|YP_004385093.1| - 0.0045 16.6 0.0 0.15 11.7 0.0 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 gi|330508665|ref|YP_004385093.1| - 0.01 15.7 0.0 0.027 14.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MazG_C PF18722.1 gi|330508665|ref|YP_004385093.1| - 0.028 13.9 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 MazG C-terminal domain HTH_Tnp_1 PF01527.20 gi|330508665|ref|YP_004385093.1| - 0.035 14.4 0.0 0.26 11.6 0.0 2.2 2 0 0 2 2 2 0 Transposase GcrA PF07750.11 gi|330508665|ref|YP_004385093.1| - 0.041 14.3 0.0 0.057 13.8 0.0 1.4 1 0 0 1 1 1 0 GcrA cell cycle regulator HTH_7 PF02796.15 gi|330508665|ref|YP_004385093.1| - 0.046 13.8 0.0 12 6.0 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_Tnp_ISL3 PF13542.6 gi|330508665|ref|YP_004385093.1| - 0.058 12.8 0.0 0.42 10.0 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|330508665|ref|YP_004385093.1| - 0.063 13.4 0.0 0.71 10.1 0.0 2.4 2 1 1 3 3 3 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|330508665|ref|YP_004385093.1| - 0.074 12.6 0.4 0.55 9.8 0.1 2.7 3 1 0 3 3 3 0 Sigma-70, region 4 HTH_45 PF14947.6 gi|330508666|ref|YP_004385094.1| - 3e-23 81.6 0.8 3.3e-23 81.5 0.8 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|330508666|ref|YP_004385094.1| - 0.0022 17.7 0.0 0.0025 17.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|330508666|ref|YP_004385094.1| - 0.0039 17.0 0.0 0.0053 16.6 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GerE PF00196.19 gi|330508666|ref|YP_004385094.1| - 0.096 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HxlR PF01638.17 gi|330508666|ref|YP_004385094.1| - 0.098 12.5 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix UPF0020 PF01170.18 gi|330508667|ref|YP_004385095.1| - 7.5e-19 68.2 0.0 4.1e-18 65.8 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|330508667|ref|YP_004385095.1| - 1.3e-08 35.1 0.1 2.3e-08 34.2 0.1 1.4 1 0 0 1 1 1 1 THUMP domain Cons_hypoth95 PF03602.15 gi|330508667|ref|YP_004385095.1| - 0.031 13.9 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 N6_N4_Mtase PF01555.18 gi|330508667|ref|YP_004385095.1| - 0.035 13.8 0.0 0.099 12.3 0.0 1.7 2 0 0 2 2 2 0 DNA methylase APH PF01636.23 gi|330508668|ref|YP_004385096.1| - 7.9e-09 35.8 0.0 1.4e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|330508668|ref|YP_004385096.1| - 0.013 15.1 0.0 0.033 13.8 0.0 1.6 2 0 0 2 2 2 0 RIO1 family AdoHcyase PF05221.17 gi|330508669|ref|YP_004385097.1| - 2.5e-66 223.9 0.0 3.8e-39 134.6 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|330508669|ref|YP_004385097.1| - 5.6e-52 176.1 0.1 1.1e-51 175.1 0.0 1.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|330508669|ref|YP_004385097.1| - 3.4e-09 36.3 0.1 6.8e-09 35.3 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|330508669|ref|YP_004385097.1| - 5.7e-06 26.0 0.0 1.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|330508669|ref|YP_004385097.1| - 0.0013 19.0 0.1 0.0057 16.9 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain Pyr_redox_2 PF07992.14 gi|330508669|ref|YP_004385097.1| - 0.016 14.5 0.1 0.029 13.6 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|330508669|ref|YP_004385097.1| - 0.059 12.7 0.1 0.11 11.7 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amidohydro_1 PF01979.20 gi|330508670|ref|YP_004385098.1| - 3.4e-61 207.5 0.0 3.9e-61 207.3 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|330508670|ref|YP_004385098.1| - 9.3e-12 45.2 0.0 5.2e-08 32.8 0.0 2.3 2 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|330508670|ref|YP_004385098.1| - 0.016 14.6 0.0 0.025 13.9 0.0 1.2 1 0 0 1 1 1 0 Adenosine/AMP deaminase HATPase_c_4 PF13749.6 gi|330508671|ref|YP_004385099.1| - 3.3e-18 65.6 0.0 8.8e-18 64.2 0.0 1.8 2 0 0 2 2 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|330508671|ref|YP_004385099.1| - 1.1e-14 54.9 0.0 1.8e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Putative DNA-binding domain HTH_24 PF13412.6 gi|330508671|ref|YP_004385099.1| - 2e-07 30.4 0.7 6.5e-05 22.4 0.0 2.9 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|330508671|ref|YP_004385099.1| - 3.8e-06 26.7 1.1 0.002 18.0 0.0 3.0 3 0 0 3 3 3 2 MarR family HTH_20 PF12840.7 gi|330508671|ref|YP_004385099.1| - 1.1e-05 25.4 1.9 0.019 15.1 0.2 2.9 3 0 0 3 3 2 2 Helix-turn-helix domain HTH_23 PF13384.6 gi|330508671|ref|YP_004385099.1| - 1.5e-05 24.6 0.9 0.0035 17.1 0.0 3.5 3 0 0 3 3 3 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|330508671|ref|YP_004385099.1| - 1.6e-05 24.6 0.7 0.0027 17.5 0.0 3.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|330508671|ref|YP_004385099.1| - 3.4e-05 23.7 0.2 0.17 11.8 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|330508671|ref|YP_004385099.1| - 0.00053 20.1 0.6 0.0028 17.7 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|330508671|ref|YP_004385099.1| - 0.012 15.3 0.0 0.45 10.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 gi|330508671|ref|YP_004385099.1| - 0.012 15.5 0.1 0.17 11.9 0.0 2.8 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain PaaX PF07848.12 gi|330508671|ref|YP_004385099.1| - 0.013 15.7 0.1 0.054 13.7 0.0 2.1 2 0 0 2 2 2 0 PaaX-like protein AbiEi_4 PF13338.6 gi|330508671|ref|YP_004385099.1| - 0.017 15.2 4.4 0.22 11.7 0.1 3.6 4 0 0 4 4 3 0 Transcriptional regulator, AbiEi antitoxin HTH_17 PF12728.7 gi|330508671|ref|YP_004385099.1| - 0.041 14.1 0.7 0.17 12.1 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|330508671|ref|YP_004385099.1| - 0.061 13.1 0.0 0.17 11.7 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|330508671|ref|YP_004385099.1| - 0.089 13.3 0.4 3.2 8.3 0.1 2.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain SgrR_N PF12793.7 gi|330508671|ref|YP_004385099.1| - 0.12 12.6 0.0 0.8 9.9 0.0 2.2 2 0 0 2 2 2 0 Sugar transport-related sRNA regulator N-term Penicillinase_R PF03965.16 gi|330508671|ref|YP_004385099.1| - 0.14 12.5 0.0 0.47 10.8 0.0 2.0 1 0 0 1 1 1 0 Penicillinase repressor DUF2250 PF10007.9 gi|330508671|ref|YP_004385099.1| - 0.16 12.1 0.1 4.5 7.5 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) CPBP PF02517.16 gi|330508672|ref|YP_004385100.1| - 6.7e-06 26.4 21.4 7.5e-05 23.0 21.4 2.7 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease DUF3537 PF12056.8 gi|330508672|ref|YP_004385100.1| - 0.041 12.7 0.2 0.073 11.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3537) Polyketide_cyc2 PF10604.9 gi|330508673|ref|YP_004385101.1| - 2.5e-12 47.3 0.0 2.9e-12 47.1 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|330508673|ref|YP_004385101.1| - 1.3e-05 25.4 0.0 1.8e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|330508673|ref|YP_004385101.1| - 8.6e-05 22.8 0.0 9.9e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein DUF3333 PF11812.8 gi|330508673|ref|YP_004385101.1| - 0.099 12.8 0.3 0.19 11.9 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3333) CMD PF02627.20 gi|330508674|ref|YP_004385102.1| - 3.8e-11 42.9 0.0 4.3e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family GAPES1 PF17155.4 gi|330508674|ref|YP_004385102.1| - 0.07 12.4 0.0 0.071 12.4 0.0 1.1 1 0 0 1 1 1 0 Gammaproteobacterial periplasmic sensor domain Voltage_CLC PF00654.20 gi|330508675|ref|YP_004385103.1| - 2.1e-82 277.2 28.3 2.1e-82 277.2 28.3 2.0 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|330508675|ref|YP_004385103.1| - 2.5e-23 82.3 1.9 7.3e-12 45.6 0.2 2.6 2 0 0 2 2 2 2 CBS domain Exo_endo_phos PF03372.23 gi|330508676|ref|YP_004385104.1| - 3e-06 26.9 0.1 6.5e-06 25.8 0.1 1.5 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Polbeta PF18765.1 gi|330508677|ref|YP_004385105.1| - 4.8e-06 26.6 0.1 3.1e-05 24.0 0.1 2.2 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|330508677|ref|YP_004385105.1| - 7.3e-05 23.0 0.1 0.00015 22.0 0.1 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.13 gi|330508677|ref|YP_004385105.1| - 0.018 14.9 0.1 0.048 13.5 0.0 1.7 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 Ig_3 PF13927.6 gi|330508678|ref|YP_004385106.1| - 5.2e-187 607.0 28.2 4.8e-09 36.7 0.1 22.3 22 0 0 22 22 22 22 Immunoglobulin domain I-set PF07679.16 gi|330508678|ref|YP_004385106.1| - 1.7e-160 521.6 26.7 6.9e-07 29.3 0.0 25.1 22 0 0 22 22 22 22 Immunoglobulin I-set domain Ig_2 PF13895.6 gi|330508678|ref|YP_004385106.1| - 4.6e-103 337.7 47.6 5.6e-05 23.4 0.0 22.1 22 0 0 22 22 22 21 Immunoglobulin domain PKD PF00801.20 gi|330508678|ref|YP_004385106.1| - 1.3e-31 108.2 43.4 0.088 12.7 0.1 20.1 20 0 0 20 20 20 11 PKD domain ig PF00047.25 gi|330508678|ref|YP_004385106.1| - 9.3e-19 67.4 32.9 2.5 8.3 0.0 18.2 18 0 0 18 18 18 4 Immunoglobulin domain Ig_4 PF16680.5 gi|330508678|ref|YP_004385106.1| - 3e-18 65.9 10.5 16 5.8 0.0 17.8 21 0 0 21 21 21 0 T-cell surface glycoprotein CD3 delta chain V-set PF07686.17 gi|330508678|ref|YP_004385106.1| - 6.4e-12 45.6 59.2 12 6.1 0.0 26.9 22 13 9 31 31 31 2 Immunoglobulin V-set domain PKD_3 PF16820.5 gi|330508678|ref|YP_004385106.1| - 1.7e-11 43.7 13.6 5.6 6.8 0.0 15.0 19 0 0 19 19 19 2 PKD-like domain ACAS_N PF16177.5 gi|330508678|ref|YP_004385106.1| - 5.1e-06 26.3 6.9 45 4.1 0.0 10.1 10 1 0 10 10 10 0 Acetyl-coenzyme A synthetase N-terminus Ribosomal_S15 PF00312.22 gi|330508678|ref|YP_004385106.1| - 7e-06 26.2 3.2 42 4.4 0.0 8.9 11 0 0 11 11 11 0 Ribosomal protein S15 Receptor_2B4 PF11465.8 gi|330508678|ref|YP_004385106.1| - 0.0001 22.5 22.5 2.2 8.5 0.0 12.6 17 0 0 17 17 16 1 Natural killer cell receptor 2B4 DUF5122 PF17164.4 gi|330508678|ref|YP_004385106.1| - 2.2 8.7 7.7 2.7 8.3 2.3 3.4 3 0 0 3 3 2 0 Domain of unknown function (DUF5122) beta-propeller PK_C PF02887.16 gi|330508679|ref|YP_004385107.1| - 8.6e-10 38.9 0.0 1.4e-09 38.1 0.0 1.4 1 1 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Nitroreductase PF00881.24 gi|330508680|ref|YP_004385108.1| - 1.7e-21 77.0 0.1 7e-11 42.5 0.1 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|330508680|ref|YP_004385108.1| - 4.1e-11 42.8 0.0 1.9e-10 40.7 0.0 2.3 1 1 0 1 1 1 1 Putative TM nitroreductase DUF5547 PF17701.1 gi|330508680|ref|YP_004385108.1| - 0.021 14.7 0.0 0.036 13.9 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5547) DUF937 PF06078.11 gi|330508681|ref|YP_004385109.1| - 2.9e-20 73.3 11.8 4.3e-20 72.7 10.4 1.8 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF937) Polyketide_cyc2 PF10604.9 gi|330508683|ref|YP_004385111.1| - 8.9e-15 55.2 1.4 1.1e-14 54.9 1.4 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|330508683|ref|YP_004385111.1| - 3.2e-06 27.4 0.3 3.6e-06 27.2 0.3 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.20 gi|330508683|ref|YP_004385111.1| - 0.0027 17.9 0.2 0.0033 17.6 0.2 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Hydrolase_4 PF12146.8 gi|330508684|ref|YP_004385112.1| - 0.058 12.7 0.0 0.078 12.2 0.0 1.2 1 0 0 1 1 1 0 Serine aminopeptidase, S33 DDE_Tnp_IS66 PF03050.14 gi|330508685|ref|YP_004385113.1| - 1.6e-06 27.8 0.6 2.7e-05 23.8 0.6 2.1 1 1 0 1 1 1 1 Transposase IS66 family Zn_ribbon_recom PF13408.6 gi|330508685|ref|YP_004385113.1| - 0.088 13.3 4.0 0.13 12.8 1.7 2.4 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|330508685|ref|YP_004385113.1| - 0.15 12.2 0.6 7.5 6.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|330508685|ref|YP_004385113.1| - 0.21 11.2 0.6 12 5.6 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|330508685|ref|YP_004385113.1| - 0.27 11.3 2.8 1.3 9.1 3.1 1.9 1 1 1 2 2 2 0 Double zinc ribbon YhfH PF14149.6 gi|330508685|ref|YP_004385113.1| - 0.66 10.0 2.5 7.3 6.7 0.3 2.6 2 0 0 2 2 2 0 YhfH-like protein TF_Zn_Ribbon PF08271.12 gi|330508685|ref|YP_004385113.1| - 6.2 6.4 5.5 77 2.9 5.5 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding AXE1 PF05448.12 gi|330508686|ref|YP_004385114.1| - 0.00032 19.5 0.0 0.00039 19.2 0.0 1.1 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Fer4 PF00037.27 gi|330508687|ref|YP_004385115.1| - 8.5e-09 34.9 11.6 4.1e-06 26.4 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330508687|ref|YP_004385115.1| - 6.9e-07 30.1 9.9 2.3e-06 28.5 9.9 1.8 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|330508687|ref|YP_004385115.1| - 3.4e-06 27.1 8.7 0.00037 20.5 11.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330508687|ref|YP_004385115.1| - 9.4e-06 25.5 10.2 0.0025 17.8 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330508687|ref|YP_004385115.1| - 5.5e-05 23.7 8.8 0.00011 22.7 8.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330508687|ref|YP_004385115.1| - 0.00028 21.0 20.5 0.0014 18.7 10.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330508687|ref|YP_004385115.1| - 0.0012 19.4 7.8 0.0049 17.4 8.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330508687|ref|YP_004385115.1| - 0.0012 18.8 9.2 0.13 12.4 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330508687|ref|YP_004385115.1| - 0.0057 16.8 8.5 0.12 12.6 0.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330508687|ref|YP_004385115.1| - 0.0061 17.4 14.9 0.18 12.8 6.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330508687|ref|YP_004385115.1| - 0.021 15.3 9.9 0.31 11.5 10.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330508687|ref|YP_004385115.1| - 0.027 15.3 3.2 1.7 9.6 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330508687|ref|YP_004385115.1| - 0.029 14.9 3.5 0.77 10.3 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|330508687|ref|YP_004385115.1| - 0.042 14.4 9.4 0.2 12.2 2.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330508687|ref|YP_004385115.1| - 0.093 12.9 13.0 0.54 10.4 13.0 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain AcetylCoA_hyd_C PF13336.6 gi|330508688|ref|YP_004385116.1| - 8e-63 211.0 0.0 1.3e-62 210.3 0.0 1.3 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 gi|330508688|ref|YP_004385116.1| - 1.5e-46 158.9 0.0 2.9e-46 158.0 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.25 gi|330508688|ref|YP_004385116.1| - 2.6e-11 43.8 0.0 5.3e-11 42.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|330508688|ref|YP_004385116.1| - 2.2e-09 38.1 0.0 4e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|330508688|ref|YP_004385116.1| - 3.1e-06 27.5 0.1 8e-06 26.2 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|330508688|ref|YP_004385116.1| - 9.3e-05 22.4 0.1 0.00022 21.2 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|330508688|ref|YP_004385116.1| - 0.00017 21.8 0.1 0.00032 20.9 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CoA_trans PF01144.23 gi|330508688|ref|YP_004385116.1| - 0.00044 19.7 0.1 1.1 8.6 0.0 3.0 3 0 0 3 3 3 2 Coenzyme A transferase DeoRC PF00455.22 gi|330508688|ref|YP_004385116.1| - 0.011 15.6 0.0 0.041 13.8 0.0 1.9 2 0 0 2 2 2 0 DeoR C terminal sensor domain Mal_decarbox_Al PF16957.5 gi|330508688|ref|YP_004385116.1| - 0.014 13.8 0.1 2.3 6.4 0.0 2.2 2 0 0 2 2 2 0 Malonate decarboxylase, alpha subunit, transporter FR47 PF08445.10 gi|330508688|ref|YP_004385116.1| - 0.029 14.3 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.6 gi|330508688|ref|YP_004385116.1| - 0.029 14.5 0.1 0.085 13.0 0.1 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase NT5C PF06941.12 gi|330508689|ref|YP_004385117.1| - 1.2e-14 54.6 0.1 1.5e-14 54.3 0.1 1.1 1 0 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Apo-CIII PF05778.12 gi|330508689|ref|YP_004385117.1| - 0.093 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Apolipoprotein CIII (Apo-CIII) OrfB_IS605 PF01385.19 gi|330508690|ref|YP_004385118.1| - 1.5e-07 31.7 0.0 2.3e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Probable transposase DDE_Tnp_1 PF01609.21 gi|330508691|ref|YP_004385119.1| - 1.9e-25 89.8 0.0 3.3e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|330508691|ref|YP_004385119.1| - 0.014 14.7 0.3 0.021 14.1 0.3 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|330508691|ref|YP_004385119.1| - 0.019 13.3 0.0 0.03 12.6 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 Tudor_FRX1 PF18336.1 gi|330508691|ref|YP_004385119.1| - 0.075 13.0 1.0 1.4 8.9 0.1 2.8 3 0 0 3 3 3 0 Fragile X mental retardation Tudor domain Peptidase_M24 PF00557.24 gi|330508692|ref|YP_004385120.1| - 8.2e-32 110.6 0.0 1.1e-31 110.2 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|330508692|ref|YP_004385120.1| - 5.2e-14 53.0 0.0 1e-13 52.1 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain YdjM PF04307.14 gi|330508693|ref|YP_004385121.1| - 2.1e-23 82.5 7.0 3.2e-23 81.9 7.0 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|330508693|ref|YP_004385121.1| - 0.0023 18.0 0.1 0.0038 17.2 0.1 1.4 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF4184 PF13803.6 gi|330508693|ref|YP_004385121.1| - 0.0035 17.1 5.7 0.0076 16.0 5.8 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4184) DUF11 PF01345.18 gi|330508695|ref|YP_004385123.1| - 0.00092 19.5 0.0 0.003 17.8 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function DUF11 Vac_ImportDeg PF09783.9 gi|330508695|ref|YP_004385123.1| - 0.038 13.8 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 Vacuolar import and degradation protein DUF99 PF01949.16 gi|330508696|ref|YP_004385124.1| - 3e-66 222.3 0.0 3.4e-66 222.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Acylphosphatase PF00708.18 gi|330508697|ref|YP_004385125.1| - 1.3e-19 70.4 0.7 3.8e-19 68.9 0.1 2.0 2 1 1 3 3 3 1 Acylphosphatase Apolipoprotein PF01442.18 gi|330508697|ref|YP_004385125.1| - 0.00018 21.4 1.5 0.00077 19.4 0.6 2.1 1 1 1 2 2 2 1 Apolipoprotein A1/A4/E domain DUF4559 PF15112.6 gi|330508697|ref|YP_004385125.1| - 0.0019 17.9 0.1 0.0023 17.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4559) Snapin_Pallidin PF14712.6 gi|330508697|ref|YP_004385125.1| - 0.0056 17.1 0.4 0.015 15.7 0.1 1.9 2 0 0 2 2 2 1 Snapin/Pallidin DUF1664 PF07889.12 gi|330508697|ref|YP_004385125.1| - 0.0075 16.3 0.9 0.028 14.5 0.7 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|330508697|ref|YP_004385125.1| - 0.0081 16.2 0.0 1.2 9.2 0.0 2.3 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.11 gi|330508697|ref|YP_004385125.1| - 0.011 15.8 0.5 0.03 14.4 0.3 1.8 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Spectrin PF00435.21 gi|330508697|ref|YP_004385125.1| - 0.014 15.9 0.1 0.063 13.8 0.0 2.1 1 1 1 2 2 2 0 Spectrin repeat DUF1115 PF06544.12 gi|330508697|ref|YP_004385125.1| - 0.036 14.1 0.0 0.051 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) ZapA PF05164.13 gi|330508697|ref|YP_004385125.1| - 0.048 14.1 1.3 0.2 12.1 0.4 2.5 2 1 1 3 3 3 0 Cell division protein ZapA Cbl_N PF02262.16 gi|330508697|ref|YP_004385125.1| - 0.14 12.1 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 CBL proto-oncogene N-terminal domain 1 Glyco_hydro_85 PF03644.13 gi|330508697|ref|YP_004385125.1| - 0.16 11.3 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 85 DUF5446 PF17522.2 gi|330508697|ref|YP_004385125.1| - 0.22 11.7 4.2 0.26 11.5 1.1 2.5 2 1 0 2 2 2 0 Family of unknown function (DUF5446) YojJ PF10372.9 gi|330508697|ref|YP_004385125.1| - 1.1 9.4 2.8 7.2 6.8 0.3 2.7 2 1 1 3 3 3 0 Bacterial membrane-spanning protein N-terminus LTD PF00932.19 gi|330508698|ref|YP_004385126.1| - 3.1e-12 46.8 0.3 7.5e-12 45.6 0.3 1.7 1 0 0 1 1 1 1 Lamin Tail Domain CBP_BcsO PF17037.5 gi|330508698|ref|YP_004385126.1| - 0.24 11.5 2.0 0.37 10.9 2.0 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsO DUF2391 PF09622.10 gi|330508699|ref|YP_004385127.1| - 0.033 13.5 0.2 0.035 13.5 0.2 1.1 1 0 0 1 1 1 0 Putative integral membrane protein (DUF2391) TAP35_44 PF07265.11 gi|330508699|ref|YP_004385127.1| - 0.036 14.1 0.6 0.04 13.9 0.6 1.1 1 0 0 1 1 1 0 Tapetum specific protein TAP35/TAP44 GATase_3 PF07685.14 gi|330508700|ref|YP_004385128.1| - 1.8e-40 138.7 0.0 2.5e-40 138.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|330508700|ref|YP_004385128.1| - 1.2e-17 64.4 0.1 6.3e-11 42.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|330508700|ref|YP_004385128.1| - 2.7e-16 59.8 0.0 4.4e-16 59.1 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_S51 PF03575.17 gi|330508700|ref|YP_004385128.1| - 0.003 17.2 0.0 0.0045 16.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 SNO PF01174.19 gi|330508700|ref|YP_004385128.1| - 0.046 13.6 0.0 0.078 12.8 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DUF1611 PF07755.11 gi|330508700|ref|YP_004385128.1| - 0.12 11.6 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain DUF166 PF02593.14 gi|330508701|ref|YP_004385129.1| - 8.9e-65 218.3 0.0 1e-64 218.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function CoA_binding_2 PF13380.6 gi|330508701|ref|YP_004385129.1| - 0.0014 19.1 0.0 0.0024 18.3 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain DapB_N PF01113.20 gi|330508701|ref|YP_004385129.1| - 0.0096 16.0 0.0 0.026 14.7 0.0 1.7 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Fumerase PF05681.14 gi|330508702|ref|YP_004385130.1| - 3.2e-92 308.8 0.0 3.7e-92 308.6 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.12 gi|330508703|ref|YP_004385131.1| - 3.6e-32 111.4 0.0 5e-32 110.9 0.0 1.1 1 0 0 1 1 1 1 Fumarase C-terminus DUF5616 PF18481.1 gi|330508704|ref|YP_004385132.1| - 1.6e-45 154.9 0.0 2.1e-45 154.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|330508704|ref|YP_004385132.1| - 1.3e-11 44.0 0.1 2.1e-11 43.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) DUF2664 PF10867.8 gi|330508704|ref|YP_004385132.1| - 0.0065 16.9 0.2 0.028 14.9 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2664) Imm72 PF15584.6 gi|330508705|ref|YP_004385133.1| - 0.041 14.0 0.2 0.041 14.0 0.2 2.2 1 1 1 2 2 2 0 Immunity protein 72 GPI PF06560.11 gi|330508706|ref|YP_004385134.1| - 4e-44 150.0 0.0 4.9e-44 149.8 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|330508706|ref|YP_004385134.1| - 0.0021 17.7 0.0 0.0055 16.4 0.0 1.7 1 1 0 1 1 1 1 Cupin domain UbiA PF01040.18 gi|330508707|ref|YP_004385135.1| - 2.5e-42 144.9 18.4 3.1e-42 144.6 18.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family YL1_C PF08265.11 gi|330508708|ref|YP_004385136.1| - 0.019 14.7 4.4 1.9 8.3 0.2 3.8 3 2 2 5 5 5 0 YL1 nuclear protein C-terminal domain PepSY_2 PF13670.6 gi|330508708|ref|YP_004385136.1| - 0.077 13.0 1.8 32 4.6 0.0 3.3 2 1 2 4 4 4 0 Peptidase propeptide and YPEB domain EphA2_TM PF14575.6 gi|330508708|ref|YP_004385136.1| - 0.088 13.7 0.2 0.31 12.0 0.2 2.0 1 1 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain OCRE PF17780.1 gi|330508708|ref|YP_004385136.1| - 0.13 12.3 5.0 1.8 8.7 5.0 2.4 1 1 0 1 1 1 0 OCRE domain SGP PF17228.2 gi|330508709|ref|YP_004385137.1| - 0.0074 17.1 1.0 0.01 16.7 1.0 1.2 1 0 0 1 1 1 1 Sulphur globule protein MtN3_slv PF03083.16 gi|330508711|ref|YP_004385139.1| - 6.2e-12 45.4 2.6 6.9e-12 45.2 2.6 1.0 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PQ-loop PF04193.14 gi|330508711|ref|YP_004385139.1| - 1.2e-07 31.4 1.0 1.2e-07 31.4 1.0 1.7 1 1 1 2 2 2 1 PQ loop repeat OST3_OST6 PF04756.13 gi|330508711|ref|YP_004385139.1| - 0.11 11.8 1.6 0.13 11.6 1.6 1.0 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Gemini_mov PF01708.16 gi|330508711|ref|YP_004385139.1| - 3.3 7.5 4.8 1.4 8.7 2.4 1.5 1 1 1 2 2 2 0 Geminivirus putative movement protein HTH_5 PF01022.20 gi|330508713|ref|YP_004385141.1| - 1.6e-16 59.9 2.1 1.7e-14 53.4 0.0 2.9 2 1 1 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|330508713|ref|YP_004385141.1| - 2.8e-11 43.3 0.1 1.2e-10 41.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain DNA_pol_viral_N PF00242.17 gi|330508713|ref|YP_004385141.1| - 0.11 11.9 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain ArsP_1 PF03773.13 gi|330508714|ref|YP_004385142.1| - 9.4e-74 248.2 21.9 1.9e-73 247.2 21.9 1.5 1 1 0 1 1 1 1 Predicted permease Phage_holin_2_3 PF16080.5 gi|330508714|ref|YP_004385142.1| - 0.035 13.8 0.1 0.035 13.8 0.1 4.4 4 1 0 4 4 4 0 Bacteriophage holin family HP1 Phage_holin_2_4 PF16082.5 gi|330508714|ref|YP_004385142.1| - 0.17 11.6 0.1 0.17 11.6 0.1 2.7 3 1 0 3 3 3 0 Bacteriophage holin family, superfamily II-like CLLAC PF15675.5 gi|330508714|ref|YP_004385142.1| - 1.8 8.2 8.5 0.18 11.4 0.7 3.0 2 0 0 2 2 2 0 CLLAC-motif containing domain FeoB_associated PF12669.7 gi|330508714|ref|YP_004385142.1| - 4.1 7.9 0.0 4.1 7.9 0.0 3.6 4 0 0 4 4 4 0 FeoB-associated Cys-rich membrane protein Pribosyltran PF00156.27 gi|330508715|ref|YP_004385143.1| - 3.3e-19 68.9 0.7 4.2e-19 68.6 0.7 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|330508715|ref|YP_004385143.1| - 0.024 14.1 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|330508715|ref|YP_004385143.1| - 0.089 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Methyltransf_25 PF13649.6 gi|330508716|ref|YP_004385144.1| - 3.2e-17 63.0 0.0 6.3e-17 62.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330508716|ref|YP_004385144.1| - 9.8e-15 55.0 0.0 1.8e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330508716|ref|YP_004385144.1| - 1e-13 51.3 0.0 1.5e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330508716|ref|YP_004385144.1| - 3.8e-11 43.1 0.0 1.4e-10 41.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330508716|ref|YP_004385144.1| - 4.5e-09 36.9 0.0 9e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330508716|ref|YP_004385144.1| - 9.3e-08 31.8 0.0 1.9e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|330508716|ref|YP_004385144.1| - 1e-06 28.3 0.0 1.6e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|330508716|ref|YP_004385144.1| - 2.6e-06 27.2 0.0 3.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 gi|330508716|ref|YP_004385144.1| - 5.6e-06 25.9 0.0 8.1e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|330508716|ref|YP_004385144.1| - 7.5e-06 25.4 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|330508716|ref|YP_004385144.1| - 0.00011 21.4 0.0 0.00015 20.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase N2227 PF07942.12 gi|330508716|ref|YP_004385144.1| - 0.0012 18.1 0.0 0.0018 17.6 0.0 1.1 1 0 0 1 1 1 1 N2227-like protein TPMT PF05724.11 gi|330508716|ref|YP_004385144.1| - 0.0015 18.2 0.0 0.002 17.8 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.10 gi|330508716|ref|YP_004385144.1| - 0.005 16.4 0.0 0.0065 16.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|330508716|ref|YP_004385144.1| - 0.0081 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|330508716|ref|YP_004385144.1| - 0.013 15.2 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|330508716|ref|YP_004385144.1| - 0.056 13.0 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|330508716|ref|YP_004385144.1| - 0.059 13.3 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|330508716|ref|YP_004385144.1| - 0.085 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|330508716|ref|YP_004385144.1| - 0.19 11.1 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) HTH_5 PF01022.20 gi|330508717|ref|YP_004385145.1| - 2.2e-15 56.2 2.0 2.5e-13 49.6 0.0 2.9 2 1 1 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|330508717|ref|YP_004385145.1| - 7.4e-10 38.7 0.2 2.2e-09 37.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain CARMIL_C PF16000.5 gi|330508717|ref|YP_004385145.1| - 0.16 11.6 0.1 0.83 9.2 0.1 1.9 1 1 0 1 1 1 0 CARMIL C-terminus ArsP_1 PF03773.13 gi|330508718|ref|YP_004385146.1| - 1.8e-73 247.3 25.1 3.9e-73 246.2 25.1 1.6 1 1 0 1 1 1 1 Predicted permease Phage_holin_2_3 PF16080.5 gi|330508718|ref|YP_004385146.1| - 0.058 13.2 0.1 0.058 13.2 0.1 4.5 4 1 0 4 4 4 0 Bacteriophage holin family HP1 Phage_holin_2_4 PF16082.5 gi|330508718|ref|YP_004385146.1| - 0.37 10.6 3.3 0.35 10.6 0.1 2.7 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like CLLAC PF15675.5 gi|330508718|ref|YP_004385146.1| - 1.5 8.5 8.5 0.18 11.4 0.7 3.2 2 0 0 2 2 2 0 CLLAC-motif containing domain But2 PF09792.9 gi|330508719|ref|YP_004385147.1| - 0.011 16.1 0.0 0.018 15.5 0.0 1.3 1 0 0 1 1 1 0 Ubiquitin 3 binding protein But2 C-terminal domain DsbD PF02683.15 gi|330508720|ref|YP_004385148.1| - 3.2e-17 63.1 14.6 4.8e-17 62.6 14.6 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|330508720|ref|YP_004385148.1| - 2.1e-08 34.3 36.5 2.2e-07 31.0 19.9 2.3 2 1 1 3 3 3 2 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.6 gi|330508720|ref|YP_004385148.1| - 8.5e-05 22.5 0.0 0.0002 21.4 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|330508720|ref|YP_004385148.1| - 0.011 16.0 0.0 0.022 15.0 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin YtpI PF14007.6 gi|330508720|ref|YP_004385148.1| - 0.031 14.4 2.1 0.031 14.4 2.1 2.4 2 0 0 2 2 2 0 YtpI-like protein Thioredoxin_4 PF13462.6 gi|330508720|ref|YP_004385148.1| - 0.17 12.1 0.1 20 5.3 0.0 2.2 1 1 1 2 2 2 0 Thioredoxin LptF_LptG PF03739.14 gi|330508720|ref|YP_004385148.1| - 0.57 9.0 18.4 0.0069 15.3 4.3 3.0 2 1 1 3 3 3 0 Lipopolysaccharide export system permease LptF/LptG Thioredoxin_3 PF13192.6 gi|330508721|ref|YP_004385149.1| - 2.6e-25 88.3 1.0 2.8e-25 88.2 1.0 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|330508721|ref|YP_004385149.1| - 0.00083 19.5 0.0 0.0013 18.9 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.20 gi|330508721|ref|YP_004385149.1| - 0.0039 17.1 0.0 0.0039 17.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.6 gi|330508721|ref|YP_004385149.1| - 0.0054 16.9 0.2 0.015 15.5 0.0 1.6 1 1 1 2 2 2 1 Thioredoxin ArsD PF06953.11 gi|330508721|ref|YP_004385149.1| - 0.056 13.8 0.0 0.061 13.7 0.0 1.2 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Rhodanese PF00581.20 gi|330508722|ref|YP_004385150.1| - 6.9e-18 65.1 0.0 3.3e-08 34.0 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|330508723|ref|YP_004385151.1| - 2.4e-19 69.8 0.0 8.9e-10 39.0 0.0 2.4 2 0 0 2 2 2 2 Rhodanese-like domain Imm75 PF15660.6 gi|330508723|ref|YP_004385151.1| - 0.0029 17.8 0.2 0.0081 16.4 0.0 1.8 2 0 0 2 2 2 1 Putative Immunity protein 75 TauE PF01925.19 gi|330508724|ref|YP_004385152.1| - 2e-43 148.7 40.7 2e-43 148.7 40.7 1.4 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE Ecm29 PF13001.7 gi|330508725|ref|YP_004385153.1| - 0.08 11.6 1.3 0.72 8.5 0.5 1.9 1 1 1 2 2 2 0 Proteasome stabiliser TetR_C_34 PF17929.1 gi|330508725|ref|YP_004385153.1| - 0.17 12.0 0.8 5.5 7.1 0.2 2.2 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain BID PF06393.11 gi|330508725|ref|YP_004385153.1| - 0.47 10.0 7.4 2.2 7.8 5.7 2.0 1 1 1 2 2 2 0 BH3 interacting domain (BID) BET PF17035.5 gi|330508725|ref|YP_004385153.1| - 4.6 7.5 6.3 1.2e+02 3.0 0.1 3.7 4 0 0 4 4 4 0 Bromodomain extra-terminal - transcription regulation Transposase_20 PF02371.16 gi|330508726|ref|YP_004385154.1| - 2.7e-24 85.3 0.1 4.8e-24 84.5 0.1 1.4 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330508726|ref|YP_004385154.1| - 5.7e-23 81.5 0.3 4.4e-22 78.6 0.0 2.5 3 1 0 3 3 3 1 Transposase Prominin PF05478.11 gi|330508726|ref|YP_004385154.1| - 0.053 11.5 0.1 0.069 11.1 0.1 1.1 1 0 0 1 1 1 0 Prominin adh_short_C2 PF13561.6 gi|330508727|ref|YP_004385155.1| - 1.5e-64 217.7 0.0 2.1e-64 217.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|330508727|ref|YP_004385155.1| - 8.7e-55 185.2 0.0 1.1e-54 184.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|330508727|ref|YP_004385155.1| - 5.4e-16 59.0 0.0 7.3e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|330508727|ref|YP_004385155.1| - 0.0039 16.7 0.1 0.0064 16.0 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family MTS PF05175.14 gi|330508727|ref|YP_004385155.1| - 0.17 11.4 0.0 0.61 9.6 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase small domain DUF4376 PF14301.6 gi|330508728|ref|YP_004385156.1| - 0.0051 17.1 0.0 0.021 15.2 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4376) Fer4_7 PF12838.7 gi|330508729|ref|YP_004385157.1| - 4.3e-05 24.0 13.3 0.023 15.3 0.4 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330508729|ref|YP_004385157.1| - 8.2e-05 22.3 12.8 0.00062 19.5 3.9 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330508729|ref|YP_004385157.1| - 0.0019 18.2 3.7 0.0019 18.2 3.7 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330508729|ref|YP_004385157.1| - 0.0035 17.4 2.4 0.0035 17.4 2.4 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330508729|ref|YP_004385157.1| - 0.0077 16.4 12.4 0.0077 16.4 12.4 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330508729|ref|YP_004385157.1| - 0.02 15.0 12.1 0.02 15.0 12.1 2.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330508729|ref|YP_004385157.1| - 0.036 14.6 1.4 0.036 14.6 1.4 2.8 2 2 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_10 PF13237.6 gi|330508729|ref|YP_004385157.1| - 0.046 13.8 16.9 0.071 13.2 1.5 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain DUF3885 PF13021.6 gi|330508729|ref|YP_004385157.1| - 0.19 11.8 0.0 3.8 7.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3885) DUF169 PF02596.15 gi|330508730|ref|YP_004385158.1| - 3.6e-47 161.0 0.0 4.3e-47 160.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Pox_F12L PF03337.13 gi|330508730|ref|YP_004385158.1| - 0.24 9.5 0.0 0.34 9.0 0.0 1.1 1 0 0 1 1 1 0 Poxvirus F12L protein Fer4_13 PF13370.6 gi|330508733|ref|YP_004385161.1| - 4.5e-19 68.7 2.0 5.4e-19 68.5 2.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|330508733|ref|YP_004385161.1| - 7.4e-16 58.7 3.5 8.4e-16 58.5 3.5 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|330508733|ref|YP_004385161.1| - 4.7e-05 23.0 9.3 0.00033 20.3 5.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330508733|ref|YP_004385161.1| - 7e-05 22.9 3.5 0.00035 20.6 3.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330508733|ref|YP_004385161.1| - 0.0011 19.1 0.3 0.0011 19.1 0.3 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330508733|ref|YP_004385161.1| - 0.0017 18.9 0.3 0.0026 18.3 0.3 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330508733|ref|YP_004385161.1| - 0.0049 16.9 2.8 0.0049 16.9 2.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330508733|ref|YP_004385161.1| - 0.0052 17.4 4.0 0.013 16.1 1.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330508733|ref|YP_004385161.1| - 0.0083 16.2 2.5 0.0083 16.2 2.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330508733|ref|YP_004385161.1| - 0.034 14.6 2.7 0.049 14.1 2.7 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330508733|ref|YP_004385161.1| - 0.057 13.6 3.3 0.057 13.6 3.3 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain GCIP PF13324.6 gi|330508733|ref|YP_004385161.1| - 0.15 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting Fam20C PF06702.12 gi|330508734|ref|YP_004385162.1| - 0.062 13.1 0.0 0.072 12.9 0.0 1.1 1 0 0 1 1 1 0 Golgi casein kinase, C-terminal, Fam20 ABC2_membrane PF01061.24 gi|330508735|ref|YP_004385163.1| - 4.1e-21 75.4 16.1 4.1e-21 75.4 16.1 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330508735|ref|YP_004385163.1| - 4.7e-16 58.8 22.7 5.4e-16 58.6 22.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|330508735|ref|YP_004385163.1| - 2.3e-05 23.8 21.5 5.9e-05 22.5 21.5 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF368 PF04018.13 gi|330508735|ref|YP_004385163.1| - 0.0025 17.5 8.7 0.0035 17.0 8.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF368) Pentapeptide_3 PF13576.6 gi|330508736|ref|YP_004385164.1| - 3.1e-42 142.5 133.2 1.4e-08 34.7 9.9 7.8 1 1 9 10 10 10 10 Pentapeptide repeats (9 copies) Mrr_N PF14338.6 gi|330508736|ref|YP_004385164.1| - 0.1 12.7 0.0 0.37 10.9 0.0 1.9 1 0 0 1 1 1 0 Mrr N-terminal domain Methyltransf_31 PF13847.6 gi|330508737|ref|YP_004385165.1| - 2.7e-36 124.6 0.0 4e-36 124.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330508737|ref|YP_004385165.1| - 5.6e-24 84.7 0.0 1.2e-23 83.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330508737|ref|YP_004385165.1| - 5.7e-24 84.6 0.0 1.9e-23 82.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330508737|ref|YP_004385165.1| - 4.3e-22 78.6 0.0 6.6e-22 78.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|330508737|ref|YP_004385165.1| - 1e-13 51.8 0.0 1.8e-13 51.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330508737|ref|YP_004385165.1| - 9.6e-13 48.3 0.0 1.3e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|330508737|ref|YP_004385165.1| - 7.9e-10 38.8 0.0 1.6e-09 37.9 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|330508737|ref|YP_004385165.1| - 2.6e-09 36.9 0.0 3.7e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|330508737|ref|YP_004385165.1| - 1.4e-06 27.9 0.0 2.9e-06 26.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|330508737|ref|YP_004385165.1| - 1.6e-06 28.2 0.0 3.8e-06 26.9 0.0 1.5 2 0 0 2 2 2 1 Hypothetical methyltransferase CMAS PF02353.20 gi|330508737|ref|YP_004385165.1| - 0.00024 20.5 0.0 0.00035 20.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.18 gi|330508737|ref|YP_004385165.1| - 0.00047 19.9 0.0 0.00077 19.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 gi|330508737|ref|YP_004385165.1| - 0.0011 19.0 0.0 0.0017 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|330508737|ref|YP_004385165.1| - 0.0035 17.5 0.0 0.0073 16.4 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase GidB PF02527.15 gi|330508737|ref|YP_004385165.1| - 0.016 14.6 0.0 0.029 13.7 0.0 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G ADH_zinc_N PF00107.26 gi|330508737|ref|YP_004385165.1| - 0.033 14.2 0.0 0.079 12.9 0.0 1.8 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_4 PF02390.17 gi|330508737|ref|YP_004385165.1| - 0.043 13.3 0.0 0.13 11.7 0.0 1.8 3 0 0 3 3 3 0 Putative methyltransferase Fibrillarin PF01269.17 gi|330508737|ref|YP_004385165.1| - 0.048 12.8 0.0 0.087 11.9 0.0 1.4 1 0 0 1 1 1 0 Fibrillarin Met_10 PF02475.16 gi|330508737|ref|YP_004385165.1| - 0.068 12.9 0.0 0.096 12.4 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein MazE_antitoxin PF04014.18 gi|330508738|ref|YP_004385166.1| - 3.2e-06 26.9 0.0 4.7e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin HTH_5 PF01022.20 gi|330508740|ref|YP_004385168.1| - 4.5e-21 74.5 0.5 4.5e-21 74.5 0.5 1.8 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|330508740|ref|YP_004385168.1| - 3.2e-15 55.9 0.1 5e-15 55.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|330508740|ref|YP_004385168.1| - 6.3e-05 22.8 0.0 0.00016 21.5 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF742 PF05331.11 gi|330508740|ref|YP_004385168.1| - 0.0025 17.6 0.0 0.0031 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) PaaX PF07848.12 gi|330508740|ref|YP_004385168.1| - 0.0028 17.8 0.0 0.027 14.7 0.0 2.1 2 0 0 2 2 2 1 PaaX-like protein HTH_23 PF13384.6 gi|330508740|ref|YP_004385168.1| - 0.008 15.9 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|330508740|ref|YP_004385168.1| - 0.013 15.3 0.5 0.023 14.5 0.1 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|330508740|ref|YP_004385168.1| - 0.021 14.4 0.2 0.12 12.0 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|330508740|ref|YP_004385168.1| - 0.058 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.16 gi|330508740|ref|YP_004385168.1| - 0.098 13.0 0.1 0.19 12.1 0.1 1.5 1 0 0 1 1 1 0 Penicillinase repressor ArsP_1 PF03773.13 gi|330508741|ref|YP_004385169.1| - 1.2e-63 215.0 24.7 1.4e-63 214.9 24.7 1.0 1 0 0 1 1 1 1 Predicted permease LMWPc PF01451.21 gi|330508742|ref|YP_004385170.1| - 5.3e-17 62.5 0.1 6.8e-17 62.2 0.1 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Fer4_13 PF13370.6 gi|330508743|ref|YP_004385171.1| - 9.4e-16 58.1 3.6 1.2e-15 57.8 3.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|330508743|ref|YP_004385171.1| - 5.3e-13 49.5 4.9 6.4e-13 49.2 4.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_10 PF13237.6 gi|330508743|ref|YP_004385171.1| - 0.00032 20.8 3.5 0.00074 19.6 3.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330508743|ref|YP_004385171.1| - 0.0014 18.4 3.2 0.0014 18.4 3.2 2.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_19 PF06902.11 gi|330508743|ref|YP_004385171.1| - 0.0049 16.9 4.2 0.068 13.3 4.2 2.0 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_21 PF14697.6 gi|330508743|ref|YP_004385171.1| - 0.011 15.9 4.7 0.025 14.7 4.7 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330508743|ref|YP_004385171.1| - 0.013 16.0 2.9 0.029 14.9 2.9 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330508743|ref|YP_004385171.1| - 0.098 12.8 2.8 0.098 12.8 2.8 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330508743|ref|YP_004385171.1| - 0.15 12.7 1.5 0.15 12.7 1.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330508743|ref|YP_004385171.1| - 0.69 10.1 6.9 0.5 10.5 2.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330508743|ref|YP_004385171.1| - 7 7.0 8.9 0.25 11.5 2.8 1.8 3 0 0 3 3 2 0 4Fe-4S binding domain DUF4297 PF14130.6 gi|330508745|ref|YP_004385173.1| - 3.8e-06 27.2 0.0 8.2e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4297) IF3_N PF05198.16 gi|330508745|ref|YP_004385173.1| - 0.12 12.6 0.0 0.4 11.0 0.0 1.9 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain PSDC PF12588.8 gi|330508745|ref|YP_004385173.1| - 0.16 11.9 0.1 0.39 10.7 0.1 1.6 1 0 0 1 1 1 0 Phophatidylserine decarboxylase DsbD PF02683.15 gi|330508746|ref|YP_004385174.1| - 1.6e-20 73.9 13.8 3.5e-20 72.8 13.8 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|330508746|ref|YP_004385174.1| - 1.9e-10 41.0 19.4 7.1e-07 29.3 3.0 2.6 2 1 0 2 2 2 2 Cytochrome C biogenesis protein transmembrane region AhpC-TSA PF00578.21 gi|330508746|ref|YP_004385174.1| - 1.4e-06 28.2 0.0 5.9e-06 26.2 0.0 1.8 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|330508746|ref|YP_004385174.1| - 0.00024 20.8 0.0 0.00053 19.7 0.0 1.5 1 1 0 1 1 1 1 Redoxin HTH_5 PF01022.20 gi|330508748|ref|YP_004385176.1| - 8.5e-17 60.8 0.5 1.7e-16 59.8 0.5 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|330508748|ref|YP_004385176.1| - 2.4e-13 49.9 0.0 3.6e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|330508748|ref|YP_004385176.1| - 0.0029 17.5 0.0 0.0057 16.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PaaX PF07848.12 gi|330508748|ref|YP_004385176.1| - 0.0091 16.2 0.0 0.017 15.3 0.0 1.6 1 0 0 1 1 1 1 PaaX-like protein HTH_27 PF13463.6 gi|330508748|ref|YP_004385176.1| - 0.052 14.0 0.0 0.12 12.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|330508748|ref|YP_004385176.1| - 0.082 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4423 PF14394.6 gi|330508748|ref|YP_004385176.1| - 0.097 12.4 0.0 0.56 9.9 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) Rhodanese PF00581.20 gi|330508749|ref|YP_004385177.1| - 5.8e-22 78.2 0.0 1.1e-13 51.6 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain SBF PF01758.16 gi|330508750|ref|YP_004385178.1| - 4.8e-63 212.4 13.6 4.8e-63 212.4 13.6 1.8 3 0 0 3 3 3 1 Sodium Bile acid symporter family FeS PF04060.13 gi|330508751|ref|YP_004385179.1| - 3.2e-12 45.9 0.4 7e-12 44.8 0.4 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.7 gi|330508751|ref|YP_004385179.1| - 8.3e-08 32.2 0.1 3.6e-07 30.1 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain TBP PF00352.21 gi|330508751|ref|YP_004385179.1| - 0.00078 19.4 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) HTH_5 PF01022.20 gi|330508751|ref|YP_004385179.1| - 0.00098 18.9 0.2 0.0037 17.1 0.2 2.0 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family ArsR PF09824.9 gi|330508751|ref|YP_004385179.1| - 0.0022 17.6 0.2 0.11 12.1 0.0 2.1 2 0 0 2 2 2 1 ArsR transcriptional regulator DrsE PF02635.15 gi|330508752|ref|YP_004385180.1| - 5.6e-20 71.9 0.0 6.3e-20 71.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.15 gi|330508753|ref|YP_004385181.1| - 1.6e-08 34.9 0.0 1.8e-08 34.8 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.12 gi|330508753|ref|YP_004385181.1| - 0.0046 17.1 0.1 0.01 16.0 0.1 1.5 1 1 0 1 1 1 1 DsrH like protein TOM6p PF15184.6 gi|330508753|ref|YP_004385181.1| - 0.086 12.6 0.2 0.24 11.2 0.2 1.8 2 1 0 2 2 2 0 Mitochondrial import receptor subunit TOM6 homolog DsrH PF04077.12 gi|330508754|ref|YP_004385182.1| - 1.6e-09 37.8 0.0 1.9e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 DsrH like protein DrsE PF02635.15 gi|330508754|ref|YP_004385182.1| - 0.028 14.8 0.0 0.45 10.9 0.0 2.1 1 1 0 1 1 1 0 DsrE/DsrF-like family Acetyltransf_1 PF00583.25 gi|330508756|ref|YP_004385184.1| - 4.4e-06 26.9 0.0 6.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|330508756|ref|YP_004385184.1| - 0.001 19.8 0.0 0.0013 19.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330508756|ref|YP_004385184.1| - 0.019 14.9 0.0 0.04 13.9 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_7 PF13508.7 gi|330508756|ref|YP_004385184.1| - 0.033 14.6 0.1 0.078 13.4 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|330508756|ref|YP_004385184.1| - 0.099 12.7 0.0 0.28 11.3 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain CCG PF02754.16 gi|330508757|ref|YP_004385185.1| - 4.7e-31 106.8 5.8 3.6e-16 59.1 0.1 2.8 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|330508757|ref|YP_004385185.1| - 9.5e-12 45.2 4.2 9.5e-12 45.2 4.2 2.1 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330508757|ref|YP_004385185.1| - 2.3e-10 40.8 3.9 2.3e-10 40.8 3.9 3.3 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330508757|ref|YP_004385185.1| - 2.7e-08 33.8 20.2 8.8e-07 29.0 10.8 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330508757|ref|YP_004385185.1| - 2.3e-07 31.3 4.9 2.3e-07 31.3 4.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330508757|ref|YP_004385185.1| - 1.4e-05 25.2 9.2 1.4e-05 25.2 9.2 3.1 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330508757|ref|YP_004385185.1| - 0.00017 21.5 15.4 0.00064 19.7 4.0 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4 PF00037.27 gi|330508757|ref|YP_004385185.1| - 0.00044 20.0 20.5 0.0062 16.3 3.3 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330508757|ref|YP_004385185.1| - 0.00073 19.7 4.2 0.72 10.1 0.1 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330508757|ref|YP_004385185.1| - 0.0029 18.5 14.9 0.026 15.4 13.0 3.1 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|330508757|ref|YP_004385185.1| - 0.0062 16.9 20.1 0.011 16.1 0.8 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330508757|ref|YP_004385185.1| - 0.016 15.3 1.6 0.016 15.3 1.6 3.4 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330508757|ref|YP_004385185.1| - 0.025 14.7 13.9 0.18 12.0 0.6 3.5 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330508757|ref|YP_004385185.1| - 0.29 11.7 13.4 0.61 10.7 0.6 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|330508757|ref|YP_004385185.1| - 0.86 10.4 0.1 0.86 10.4 0.1 3.4 4 0 0 4 4 3 0 4Fe-4S single cluster domain HIT PF01230.23 gi|330508758|ref|YP_004385186.1| - 2.8e-17 63.2 0.0 4.1e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|330508758|ref|YP_004385186.1| - 9.9e-09 35.7 0.0 1.5e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|330508758|ref|YP_004385186.1| - 1.7e-05 24.7 0.0 2.3e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 FAD-oxidase_C PF02913.19 gi|330508759|ref|YP_004385187.1| - 5.4e-58 196.6 0.0 6.7e-58 196.3 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|330508759|ref|YP_004385187.1| - 5.4e-44 149.3 0.0 1e-43 148.4 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain DsbD PF02683.15 gi|330508760|ref|YP_004385188.1| - 1.8e-19 70.5 16.6 1.1e-18 67.9 16.6 2.2 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|330508760|ref|YP_004385188.1| - 8.9e-09 35.6 21.6 0.00017 21.6 4.7 2.8 2 1 0 2 2 2 2 Cytochrome C biogenesis protein transmembrane region AhpC-TSA PF00578.21 gi|330508760|ref|YP_004385188.1| - 1.8e-05 24.6 0.0 3.7e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|330508760|ref|YP_004385188.1| - 0.0046 16.7 0.0 0.0079 15.9 0.0 1.3 1 0 0 1 1 1 1 Redoxin CPP1-like PF11833.8 gi|330508760|ref|YP_004385188.1| - 2.4 7.8 5.9 0.33 10.6 0.5 2.2 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like E1-E2_ATPase PF00122.20 gi|330508760|ref|YP_004385188.1| - 9.1 5.8 9.0 0.73 9.3 0.6 2.7 2 1 0 3 3 3 0 E1-E2 ATPase Thioredoxin_7 PF13899.6 gi|330508761|ref|YP_004385189.1| - 0.17 12.1 0.0 0.87 9.8 0.0 1.9 2 0 0 2 2 2 0 Thioredoxin-like DUF2582 PF10771.9 gi|330508762|ref|YP_004385190.1| - 2.4e-13 50.0 0.1 3.1e-13 49.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix domain (DUF2582) AA_permease_2 PF13520.6 gi|330508763|ref|YP_004385191.1| - 1.2e-14 54.0 14.8 1.5e-14 53.7 14.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|330508763|ref|YP_004385191.1| - 3.2e-09 35.9 12.5 4.1e-09 35.5 12.5 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|330508763|ref|YP_004385191.1| - 0.15 12.2 0.4 0.15 12.2 0.4 3.1 3 1 1 4 4 4 0 C-terminus of AA_permease Trypan_glycop PF00913.19 gi|330508764|ref|YP_004385192.1| - 0.0045 16.3 1.1 0.0045 16.3 1.1 1.7 1 1 1 2 2 2 1 Trypanosome variant surface glycoprotein (A-type) CHAT PF12770.7 gi|330508765|ref|YP_004385193.1| - 1.7e-17 63.8 0.0 2.9e-17 63.0 0.0 1.5 1 1 0 1 1 1 1 CHAT domain Peptidase_C25 PF01364.18 gi|330508765|ref|YP_004385193.1| - 0.039 13.2 0.0 0.061 12.5 0.0 1.3 1 0 0 1 1 1 0 Peptidase family C25 TPR_12 PF13424.6 gi|330508766|ref|YP_004385194.1| - 2.4e-252 816.0 77.6 9.8e-26 89.9 0.4 13.7 1 1 14 15 15 15 15 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330508766|ref|YP_004385194.1| - 6.6e-216 693.4 36.7 4.1e-16 58.3 0.1 16.1 16 0 0 16 16 16 15 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330508766|ref|YP_004385194.1| - 3.9e-107 346.1 21.8 4e-07 29.6 0.1 15.5 16 0 0 16 16 15 15 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330508766|ref|YP_004385194.1| - 2.6e-96 308.8 34.7 6.9e-06 25.7 0.0 16.0 16 0 0 16 16 16 15 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330508766|ref|YP_004385194.1| - 2.7e-82 264.2 30.5 5.3e-05 23.1 0.1 15.6 16 0 0 16 16 15 15 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330508766|ref|YP_004385194.1| - 2.4e-79 255.2 32.8 0.00012 21.9 0.1 16.0 16 0 0 16 16 16 15 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330508766|ref|YP_004385194.1| - 8e-59 191.9 53.5 0.0022 18.2 0.0 15.8 15 1 0 15 15 15 15 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330508766|ref|YP_004385194.1| - 2.1e-52 175.5 28.4 0.00064 20.2 0.0 14.6 2 2 13 15 15 15 15 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330508766|ref|YP_004385194.1| - 2.5e-52 175.2 42.8 2.6e-07 31.2 0.9 12.4 2 2 12 14 14 14 14 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|330508766|ref|YP_004385194.1| - 2.1e-34 119.4 0.0 4e-10 39.6 0.0 5.8 1 1 4 5 5 5 5 MalT-like TPR region TPR_3 PF07720.12 gi|330508766|ref|YP_004385194.1| - 2e-33 113.9 0.0 0.18 11.8 0.0 15.5 16 0 0 16 16 16 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330508766|ref|YP_004385194.1| - 1.9e-29 99.8 34.8 1.7 9.6 0.1 15.5 9 5 7 16 16 15 6 Tetratricopeptide repeat DUF630 PF04783.12 gi|330508766|ref|YP_004385194.1| - 7.1e-23 80.5 6.8 0.18 12.0 0.0 12.8 10 2 2 13 13 13 1 Protein of unknown function (DUF630) TPR_4 PF07721.14 gi|330508766|ref|YP_004385194.1| - 8.2e-21 72.4 0.0 24 5.9 0.0 13.7 14 0 0 14 14 14 0 Tetratricopeptide repeat SNAP PF14938.6 gi|330508766|ref|YP_004385194.1| - 1.9e-20 73.5 0.0 9.6e-05 21.9 0.0 4.9 1 1 4 5 5 5 4 Soluble NSF attachment protein, SNAP TPR_6 PF13174.6 gi|330508766|ref|YP_004385194.1| - 4.5e-17 61.5 31.3 11 6.9 0.0 15.7 16 0 0 16 16 15 0 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|330508766|ref|YP_004385194.1| - 1.3e-15 57.3 12.3 0.36 10.9 0.0 10.6 1 1 8 9 9 9 4 Anaphase-promoting complex subunit 5 TPR_5 PF12688.7 gi|330508766|ref|YP_004385194.1| - 3.1e-14 53.2 7.6 0.058 13.6 0.2 10.1 4 2 6 10 10 10 1 Tetratrico peptide repeat ANAPC3 PF12895.7 gi|330508766|ref|YP_004385194.1| - 1.5e-12 47.5 21.0 0.078 13.2 0.0 10.2 1 1 10 11 11 11 5 Anaphase-promoting complex, cyclosome, subunit 3 DUF4404 PF14357.6 gi|330508766|ref|YP_004385194.1| - 1.7e-11 44.6 0.0 96 3.7 0.0 12.3 14 1 0 14 14 14 0 Domain of unknown function (DUF4404) TetR_C_32 PF09209.11 gi|330508766|ref|YP_004385194.1| - 1.2e-10 41.5 0.0 23 5.0 0.0 10.1 11 1 1 12 12 12 0 Tetracyclin repressor-like, C-terminal domain TPR_11 PF13414.6 gi|330508766|ref|YP_004385194.1| - 1.9e-09 37.0 50.2 0.11 12.2 0.4 16.1 12 6 7 19 19 19 2 TPR repeat MIT PF04212.18 gi|330508766|ref|YP_004385194.1| - 4.2e-07 29.9 11.1 14 5.8 0.0 10.2 5 3 7 12 12 12 0 MIT (microtubule interacting and transport) domain RPN6_N PF18055.1 gi|330508766|ref|YP_004385194.1| - 8.8e-07 29.3 0.4 14 6.1 0.0 7.5 4 3 6 11 11 11 0 26S proteasome regulatory subunit RPN6 N-terminal domain Clathrin PF00637.20 gi|330508766|ref|YP_004385194.1| - 1.3e-06 28.4 1.9 0.28 11.0 0.1 5.3 4 2 2 6 6 6 1 Region in Clathrin and VPS Ribosomal_L6e_N PF03868.15 gi|330508766|ref|YP_004385194.1| - 6.9e-06 26.2 13.5 17 5.8 0.0 10.5 12 0 0 12 12 12 0 Ribosomal protein L6, N-terminal domain Asparaginase_II PF06089.12 gi|330508766|ref|YP_004385194.1| - 5e-05 22.5 1.4 58 2.6 0.0 8.0 5 3 4 11 11 11 0 L-asparaginase II DUF1897 PF09005.10 gi|330508766|ref|YP_004385194.1| - 5.1e-05 22.7 43.3 2.8 7.5 0.0 14.0 17 0 0 17 17 15 2 Domain of unknown function (DUF1897) DUF5532 PF17673.1 gi|330508766|ref|YP_004385194.1| - 0.0012 18.9 0.0 58 3.8 0.0 6.7 5 2 4 10 10 8 0 Family of unknown function (DUF5532) BTAD PF03704.17 gi|330508766|ref|YP_004385194.1| - 0.0033 17.9 28.4 2.9 8.3 0.7 10.9 1 1 7 9 9 9 1 Bacterial transcriptional activator domain RPN7 PF10602.9 gi|330508766|ref|YP_004385194.1| - 0.011 15.5 5.1 33 4.1 0.0 7.3 6 3 2 8 8 8 0 26S proteasome subunit RPN7 FCH PF00611.23 gi|330508766|ref|YP_004385194.1| - 0.027 14.7 26.0 36 4.7 0.1 10.6 8 4 1 9 9 9 0 Fes/CIP4, and EFC/F-BAR homology domain Vault_4 PF17796.1 gi|330508766|ref|YP_004385194.1| - 0.063 13.4 2.8 3.2e+02 1.5 0.0 5.6 6 0 0 6 6 5 0 Major Vault Protein repeat domain HemX PF04375.14 gi|330508766|ref|YP_004385194.1| - 0.083 12.2 0.0 7.6 5.7 0.0 3.7 4 1 1 5 5 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF2199 PF09965.9 gi|330508766|ref|YP_004385194.1| - 0.21 11.6 2.0 62 3.6 0.0 5.0 5 2 1 6 6 6 0 Uncharacterized protein conserved in bacteria (DUF2199) Arg_decarb_HB PF17810.1 gi|330508766|ref|YP_004385194.1| - 0.67 10.2 5.1 61 4.0 0.0 6.0 6 2 2 8 8 7 0 Arginine decarboxylase helical bundle domain 14-3-3 PF00244.20 gi|330508766|ref|YP_004385194.1| - 0.77 9.2 4.2 36 3.8 0.1 4.9 5 2 2 7 7 6 0 14-3-3 protein Foie-gras_1 PF11817.8 gi|330508766|ref|YP_004385194.1| - 6.2 6.3 21.1 31 4.0 0.0 8.0 10 1 0 10 10 10 0 Foie gras liver health family 1 Flavoprotein PF02441.19 gi|330508767|ref|YP_004385195.1| - 3.4e-26 91.9 0.0 4.7e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein RlaP PF10127.9 gi|330508768|ref|YP_004385196.1| - 1.8e-12 47.4 0.0 2.4e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 RNA repair pathway DNA polymerase beta family NTP_transf_2 PF01909.23 gi|330508768|ref|YP_004385196.1| - 0.099 12.9 0.0 0.19 12.0 0.0 1.5 1 1 0 1 1 1 0 Nucleotidyltransferase domain DS PF01916.17 gi|330508769|ref|YP_004385197.1| - 1e-99 333.4 0.0 1.2e-99 333.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Oxidored_q4 PF00507.19 gi|330508770|ref|YP_004385198.1| - 1.4e-30 105.3 5.2 1.4e-30 105.3 5.2 2.0 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MaAIMP_sms PF16951.5 gi|330508770|ref|YP_004385198.1| - 4.5 7.1 7.9 0.23 11.2 1.1 2.1 2 0 0 2 2 2 0 Putative methionine and alanine importer, small subunit Oxidored_q6 PF01058.22 gi|330508771|ref|YP_004385199.1| - 6.4e-20 71.3 0.0 9.4e-20 70.8 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|330508772|ref|YP_004385200.1| - 1.5e-79 266.9 0.3 2.8e-76 256.2 0.1 2.8 2 1 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|330508772|ref|YP_004385200.1| - 5e-31 107.9 0.0 9.9e-31 106.9 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|330508772|ref|YP_004385200.1| - 2.5e-07 30.0 0.0 6.4e-07 28.6 0.0 1.7 2 0 0 2 2 2 1 Nickel-dependent hydrogenase efThoc1 PF11957.8 gi|330508772|ref|YP_004385200.1| - 0.19 10.4 0.0 0.27 9.9 0.0 1.1 1 0 0 1 1 1 0 THO complex subunit 1 transcription elongation factor NADHdh PF00146.21 gi|330508773|ref|YP_004385201.1| - 2.5e-102 342.2 17.6 3.1e-102 341.9 17.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|330508774|ref|YP_004385202.1| - 2.2e-13 49.4 19.4 3.7e-07 29.7 5.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330508774|ref|YP_004385202.1| - 1.9e-10 41.2 13.7 3.5e-10 40.3 13.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330508774|ref|YP_004385202.1| - 2e-09 37.4 20.8 1.7e-07 31.3 11.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330508774|ref|YP_004385202.1| - 8.1e-08 32.3 14.1 2.3e-07 30.8 14.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330508774|ref|YP_004385202.1| - 8.5e-08 32.3 10.6 1.9e-07 31.1 10.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330508774|ref|YP_004385202.1| - 2.6e-07 30.3 11.8 0.0003 20.7 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330508774|ref|YP_004385202.1| - 5.3e-07 30.1 5.4 0.0028 18.2 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330508774|ref|YP_004385202.1| - 5e-06 27.3 15.5 0.0014 19.5 1.8 3.0 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|330508774|ref|YP_004385202.1| - 5.6e-05 23.0 18.7 0.0054 16.8 6.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330508774|ref|YP_004385202.1| - 0.00032 21.0 14.6 0.0032 17.8 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330508774|ref|YP_004385202.1| - 0.00041 20.7 14.7 0.0013 19.1 13.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330508774|ref|YP_004385202.1| - 0.00071 20.3 18.6 0.19 12.5 3.0 3.0 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|330508774|ref|YP_004385202.1| - 0.0009 20.0 10.0 0.0093 16.8 0.8 2.5 1 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330508774|ref|YP_004385202.1| - 0.4 11.7 26.1 1.1 10.4 9.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330508774|ref|YP_004385202.1| - 0.43 10.8 12.2 1.9e+02 2.2 12.2 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330508774|ref|YP_004385202.1| - 6 7.5 20.7 2.4 8.8 0.9 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Oxidored_q2 PF00420.24 gi|330508775|ref|YP_004385203.1| - 3.3e-23 81.3 6.2 3.6e-23 81.2 6.2 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|330508776|ref|YP_004385204.1| - 6.3e-75 252.1 26.6 9.2e-75 251.6 25.5 2.0 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|330508776|ref|YP_004385204.1| - 2.5e-15 56.3 0.2 2.5e-15 56.3 0.2 3.9 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|330508776|ref|YP_004385204.1| - 0.0096 15.6 0.3 0.3 10.7 0.0 2.9 3 0 0 3 3 3 1 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Proton_antipo_M PF00361.20 gi|330508777|ref|YP_004385205.1| - 4.6e-73 246.0 28.2 9.2e-73 245.0 28.2 1.5 1 0 0 1 1 1 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|330508777|ref|YP_004385205.1| - 0.00068 19.7 3.9 0.00068 19.7 3.9 5.0 4 3 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_N PF00662.20 gi|330508777|ref|YP_004385205.1| - 0.024 14.7 0.2 0.024 14.7 0.2 4.2 6 0 0 6 6 6 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|330508778|ref|YP_004385206.1| - 2e-63 214.3 30.0 2e-63 214.3 30.0 3.2 2 2 0 2 2 2 1 Proton-conducting membrane transporter GET2 PF08690.10 gi|330508778|ref|YP_004385206.1| - 0.83 9.3 2.5 1.7 8.2 2.5 1.5 1 0 0 1 1 1 0 GET complex subunit GET2 ABC_tran PF00005.27 gi|330508780|ref|YP_004385208.1| - 3e-32 112.0 0.0 5.2e-32 111.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330508780|ref|YP_004385208.1| - 4e-16 59.7 3.0 2.1e-10 40.9 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|330508780|ref|YP_004385208.1| - 5.3e-09 36.2 0.3 0.00033 20.5 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|330508780|ref|YP_004385208.1| - 9.4e-09 35.0 0.2 2.9e-08 33.4 0.2 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|330508780|ref|YP_004385208.1| - 1.1e-05 25.0 0.1 2.4e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|330508780|ref|YP_004385208.1| - 0.0014 19.2 0.1 0.0019 18.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|330508780|ref|YP_004385208.1| - 0.026 14.7 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|330508780|ref|YP_004385208.1| - 0.032 14.2 0.2 0.066 13.1 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase NACHT PF05729.12 gi|330508780|ref|YP_004385208.1| - 0.089 12.7 0.5 0.55 10.1 0.1 2.0 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.6 gi|330508780|ref|YP_004385208.1| - 0.15 12.4 0.1 0.2 12.0 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|330508780|ref|YP_004385208.1| - 0.16 11.7 0.2 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|330508780|ref|YP_004385208.1| - 0.17 12.1 0.0 2.5 8.4 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit CbiQ PF02361.16 gi|330508781|ref|YP_004385209.1| - 3.3e-34 118.4 12.0 4.9e-34 117.9 12.0 1.1 1 0 0 1 1 1 1 Cobalt transport protein Pico_P1A PF02226.16 gi|330508782|ref|YP_004385210.1| - 0.079 13.0 0.2 0.19 11.8 0.2 1.6 1 0 0 1 1 1 0 Picornavirus coat protein (VP4) Lactamase_B PF00753.27 gi|330508783|ref|YP_004385211.1| - 5.8e-20 72.1 2.8 1.7e-19 70.6 2.8 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|330508783|ref|YP_004385211.1| - 1.5e-07 31.1 0.0 2e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|330508783|ref|YP_004385211.1| - 0.047 13.1 0.0 0.083 12.3 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain RTC PF01137.21 gi|330508784|ref|YP_004385212.1| - 3.5e-81 271.6 0.1 4e-81 271.4 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|330508784|ref|YP_004385212.1| - 4e-16 59.4 0.1 9e-16 58.3 0.1 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain MFS_1 PF07690.16 gi|330508785|ref|YP_004385213.1| - 1.9e-44 152.1 44.2 1.9e-44 152.1 44.2 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|330508785|ref|YP_004385213.1| - 1.1e-10 40.7 31.2 2.2e-06 26.5 3.7 2.9 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.24 gi|330508785|ref|YP_004385213.1| - 5e-10 38.8 11.0 5e-10 38.8 11.0 3.0 2 1 0 3 3 3 1 Sugar (and other) transporter TRI12 PF06609.13 gi|330508785|ref|YP_004385213.1| - 6.4e-05 21.6 5.5 6.4e-05 21.6 5.5 2.1 1 1 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) OATP PF03137.20 gi|330508785|ref|YP_004385213.1| - 0.062 11.6 0.1 0.062 11.6 0.1 3.4 2 2 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family FMN_red PF03358.15 gi|330508786|ref|YP_004385214.1| - 1.1e-33 116.2 0.0 1.3e-33 116.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|330508786|ref|YP_004385214.1| - 3.5e-08 33.4 0.0 4.6e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold PRC PF05239.16 gi|330508787|ref|YP_004385215.1| - 2.1e-13 50.1 1.1 2.4e-13 49.9 1.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain Thg1 PF04446.12 gi|330508788|ref|YP_004385216.1| - 1.8e-16 60.3 0.0 2.9e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|330508788|ref|YP_004385216.1| - 8e-07 29.2 0.0 1.1e-06 28.9 0.0 1.1 1 0 0 1 1 1 1 Thg1 C terminal domain Sigma70_r4_2 PF08281.12 gi|330508789|ref|YP_004385217.1| - 0.00051 19.7 0.1 1.7 8.4 0.0 3.7 4 0 0 4 4 4 2 Sigma-70, region 4 MFS_1 PF07690.16 gi|330508789|ref|YP_004385217.1| - 0.034 13.1 2.4 0.029 13.3 0.9 1.5 2 0 0 2 2 2 0 Major Facilitator Superfamily RuBisCO_large PF00016.20 gi|330508790|ref|YP_004385218.1| - 2.1e-90 302.9 0.0 8.1e-66 222.2 0.0 2.1 1 1 1 2 2 2 2 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|330508790|ref|YP_004385218.1| - 1.7e-29 102.5 0.0 3.3e-29 101.5 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain sCache_2 PF17200.4 gi|330508791|ref|YP_004385219.1| - 8.9e-34 116.6 0.3 6.9e-21 74.7 0.3 2.1 2 0 0 2 2 2 2 Single Cache domain 2 dCache_2 PF08269.11 gi|330508791|ref|YP_004385219.1| - 3.9e-28 98.5 0.0 1.3e-27 96.8 0.0 1.7 1 1 0 1 1 1 1 Cache domain sCache_3_2 PF17203.4 gi|330508791|ref|YP_004385219.1| - 0.0066 16.6 0.0 1.8 8.7 0.0 2.2 2 0 0 2 2 2 2 Single cache domain 3 Cache_3-Cache_2 PF17201.4 gi|330508791|ref|YP_004385219.1| - 0.0096 15.2 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain DUF4261 PF14080.6 gi|330508791|ref|YP_004385219.1| - 0.14 12.3 0.1 1.2 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4261) SbcCD_C PF13558.6 gi|330508791|ref|YP_004385219.1| - 0.16 12.2 0.7 0.28 11.5 0.7 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SMBP PF16785.5 gi|330508791|ref|YP_004385219.1| - 0.3 11.3 0.9 20 5.4 0.5 2.1 2 0 0 2 2 2 0 Small metal-binding protein Alkyl_sulf_dimr PF14863.6 gi|330508792|ref|YP_004385220.1| - 6.6e-51 172.4 0.5 1.6e-50 171.2 0.5 1.7 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.27 gi|330508792|ref|YP_004385220.1| - 1.1e-35 123.5 0.3 1.6e-35 122.9 0.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Alkyl_sulf_C PF14864.6 gi|330508792|ref|YP_004385220.1| - 4.6e-32 111.0 0.1 1.1e-31 109.8 0.1 1.7 1 0 0 1 1 1 1 Alkyl sulfatase C-terminal Lactamase_B_2 PF12706.7 gi|330508792|ref|YP_004385220.1| - 6.9e-07 29.0 0.0 1.4e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Glyco_hydro_9 PF00759.19 gi|330508792|ref|YP_004385220.1| - 0.092 12.2 1.0 0.16 11.3 1.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 9 HNH_2 PF13391.6 gi|330508792|ref|YP_004385220.1| - 0.17 12.1 0.0 0.35 11.0 0.0 1.6 1 0 0 1 1 1 0 HNH endonuclease DUF2196 PF09962.9 gi|330508793|ref|YP_004385221.1| - 3.4e-33 113.4 2.7 3.7e-33 113.3 2.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) FAM219A PF15260.6 gi|330508794|ref|YP_004385222.1| - 0.037 14.4 0.2 0.053 13.9 0.2 1.2 1 0 0 1 1 1 0 Protein family FAM219A zinc_ribbon_6 PF14599.6 gi|330508795|ref|YP_004385223.1| - 0.0093 16.0 0.7 0.02 14.9 0.7 1.6 1 1 1 2 2 2 1 Zinc-ribbon LIM PF00412.22 gi|330508795|ref|YP_004385223.1| - 0.056 13.7 1.2 0.081 13.2 1.2 1.2 1 0 0 1 1 1 0 LIM domain DZR PF12773.7 gi|330508795|ref|YP_004385223.1| - 0.057 13.5 3.1 0.13 12.3 3.1 1.6 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|330508795|ref|YP_004385223.1| - 0.085 12.8 3.4 0.14 12.1 3.2 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.6 gi|330508795|ref|YP_004385223.1| - 0.27 11.2 3.1 0.66 10.0 3.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|330508795|ref|YP_004385223.1| - 0.4 10.3 3.1 0.66 9.6 0.2 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF488 PF04343.13 gi|330508798|ref|YP_004385226.1| - 2.6e-30 105.5 0.1 2.9e-30 105.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 DUF3884 PF13024.6 gi|330508798|ref|YP_004385226.1| - 0.091 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3884) Dak1_2 PF13684.6 gi|330508798|ref|YP_004385226.1| - 0.13 11.3 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Dihydroxyacetone kinase family 2Fe-2S_thioredx PF01257.19 gi|330508799|ref|YP_004385227.1| - 2.5e-50 170.1 0.0 2.8e-50 170.0 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin HTH_23 PF13384.6 gi|330508799|ref|YP_004385227.1| - 0.061 13.1 0.0 0.33 10.8 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain Complex1_51K PF01512.17 gi|330508800|ref|YP_004385228.1| - 4.5e-44 150.0 0.0 7.7e-44 149.2 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|330508800|ref|YP_004385228.1| - 4.8e-32 109.9 0.3 4.8e-32 109.9 0.3 2.6 3 0 0 3 3 3 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer4 PF00037.27 gi|330508800|ref|YP_004385228.1| - 6.9e-10 38.3 14.3 1.3e-06 27.9 3.9 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain SLBB PF10531.9 gi|330508800|ref|YP_004385228.1| - 4.8e-09 35.9 2.3 1e-08 34.9 2.3 1.6 1 0 0 1 1 1 1 SLBB domain Fer4_10 PF13237.6 gi|330508800|ref|YP_004385228.1| - 1.9e-07 31.1 21.7 2.1e-06 27.7 11.9 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330508800|ref|YP_004385228.1| - 3.7e-07 30.2 9.5 3.7e-07 30.2 9.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330508800|ref|YP_004385228.1| - 5.6e-07 29.3 22.7 0.00054 19.9 2.3 4.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330508800|ref|YP_004385228.1| - 8.1e-07 29.1 8.8 8.1e-07 29.1 8.8 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330508800|ref|YP_004385228.1| - 1.5e-06 28.0 25.8 0.00051 20.0 2.9 4.0 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330508800|ref|YP_004385228.1| - 2.1e-06 28.2 8.7 2.1e-06 28.2 8.7 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330508800|ref|YP_004385228.1| - 0.00023 21.6 11.9 0.038 14.5 2.8 2.9 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_11 PF13247.6 gi|330508800|ref|YP_004385228.1| - 0.0011 19.0 3.0 0.003 17.6 3.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330508800|ref|YP_004385228.1| - 0.0016 18.9 12.7 0.054 14.0 0.7 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain 2Fe-2S_thioredx PF01257.19 gi|330508800|ref|YP_004385228.1| - 0.0016 18.3 0.0 0.0038 17.1 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Fer4_17 PF13534.6 gi|330508800|ref|YP_004385228.1| - 0.012 16.1 15.8 0.12 12.9 1.4 3.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330508800|ref|YP_004385228.1| - 0.76 10.9 22.8 0.24 12.4 3.8 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330508800|ref|YP_004385228.1| - 4.2 8.4 22.9 0.13 13.2 3.1 3.2 2 1 2 4 4 3 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|330508800|ref|YP_004385228.1| - 8.2 6.7 9.9 37 4.6 9.9 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.13 gi|330508801|ref|YP_004385229.1| - 1.9e-33 115.5 0.0 4.6e-33 114.2 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Fer2_4 PF13510.6 gi|330508801|ref|YP_004385229.1| - 4.2e-17 62.0 0.0 9.7e-17 60.8 0.0 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FrhB_FdhB_N PF04422.13 gi|330508801|ref|YP_004385229.1| - 4.3e-13 49.2 0.1 9e-13 48.2 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer2 PF00111.27 gi|330508801|ref|YP_004385229.1| - 3e-08 33.5 0.1 3e-08 33.5 0.1 2.8 3 0 0 3 3 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_21 PF14697.6 gi|330508801|ref|YP_004385229.1| - 3.1e-07 30.4 8.3 3.1e-07 30.4 8.3 2.2 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330508801|ref|YP_004385229.1| - 3.4e-06 26.6 2.4 3.4e-06 26.6 2.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330508801|ref|YP_004385229.1| - 6.8e-06 26.6 9.4 6.8e-06 26.6 9.4 2.6 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330508801|ref|YP_004385229.1| - 6.1e-05 23.9 9.5 0.00071 20.5 0.3 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|330508801|ref|YP_004385229.1| - 9.6e-05 22.3 21.2 0.0056 16.7 4.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330508801|ref|YP_004385229.1| - 0.00028 21.0 15.9 0.00079 19.5 11.5 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330508801|ref|YP_004385229.1| - 0.0035 17.4 22.8 0.0091 16.1 13.5 3.0 3 1 2 5 5 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330508801|ref|YP_004385229.1| - 0.0042 17.1 2.8 0.0042 17.1 2.8 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330508801|ref|YP_004385229.1| - 0.0048 17.3 12.0 0.0066 16.9 9.8 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330508801|ref|YP_004385229.1| - 0.009 16.8 7.2 0.059 14.2 0.5 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330508801|ref|YP_004385229.1| - 0.24 11.6 11.6 0.56 10.4 2.0 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330508801|ref|YP_004385229.1| - 0.38 11.5 7.9 2.9 8.7 1.3 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|330508801|ref|YP_004385229.1| - 0.6 10.7 14.2 3.3 8.3 4.1 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I CoA_binding_3 PF13727.6 gi|330508803|ref|YP_004385231.1| - 0.00025 21.1 2.4 0.011 15.7 0.3 2.2 2 0 0 2 2 2 2 CoA-binding domain DUF3043 PF11241.8 gi|330508803|ref|YP_004385231.1| - 0.048 13.7 0.5 0.5 10.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3043) DUF1211 PF06736.11 gi|330508803|ref|YP_004385231.1| - 0.23 11.9 5.0 0.15 12.5 2.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1211) Methyltransf_31 PF13847.6 gi|330508804|ref|YP_004385232.1| - 7.5e-36 123.2 0.0 1.3e-35 122.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330508804|ref|YP_004385232.1| - 1.1e-23 83.7 0.0 3.4e-23 82.1 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330508804|ref|YP_004385232.1| - 1.2e-23 83.6 0.0 2.7e-23 82.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330508804|ref|YP_004385232.1| - 8.3e-19 67.8 0.1 1.5e-18 67.0 0.1 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|330508804|ref|YP_004385232.1| - 2.6e-12 46.9 0.0 3.4e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330508804|ref|YP_004385232.1| - 1.7e-11 44.8 0.0 3.1e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|330508804|ref|YP_004385232.1| - 1.1e-10 41.7 0.0 1.7e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|330508804|ref|YP_004385232.1| - 6.2e-07 29.1 0.0 8.9e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.15 gi|330508804|ref|YP_004385232.1| - 2.4e-06 27.6 0.1 4.7e-06 26.6 0.1 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase UPF0020 PF01170.18 gi|330508804|ref|YP_004385232.1| - 2.4e-05 24.1 0.0 4.2e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|330508804|ref|YP_004385232.1| - 2.5e-05 23.9 0.0 5.2e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|330508804|ref|YP_004385232.1| - 0.00017 21.6 0.0 0.00039 20.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|330508804|ref|YP_004385232.1| - 0.0016 17.8 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|330508804|ref|YP_004385232.1| - 0.0062 16.0 0.0 0.015 14.8 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase UBA_2 PF08587.11 gi|330508804|ref|YP_004385232.1| - 0.019 15.1 0.0 0.051 13.7 0.0 1.7 1 0 0 1 1 1 0 Ubiquitin associated domain (UBA) Methyltransf_3 PF01596.17 gi|330508804|ref|YP_004385232.1| - 0.025 13.7 0.0 0.041 13.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase FtsJ PF01728.19 gi|330508804|ref|YP_004385232.1| - 0.03 14.4 0.0 0.14 12.3 0.0 2.0 2 1 0 2 2 2 0 FtsJ-like methyltransferase Fibrillarin PF01269.17 gi|330508804|ref|YP_004385232.1| - 0.031 13.4 0.0 0.054 12.6 0.0 1.4 1 0 0 1 1 1 0 Fibrillarin Methyltransf_18 PF12847.7 gi|330508804|ref|YP_004385232.1| - 0.056 13.4 0.0 0.093 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Macro PF01661.21 gi|330508805|ref|YP_004385233.1| - 2.8e-44 149.9 0.0 3.9e-44 149.5 0.0 1.2 1 0 0 1 1 1 1 Macro domain HATPase_c PF02518.26 gi|330508806|ref|YP_004385234.1| - 2.3e-31 108.6 0.0 4.5e-31 107.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|330508806|ref|YP_004385234.1| - 1.3e-26 92.9 0.1 2.8e-26 91.9 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|330508806|ref|YP_004385234.1| - 2e-20 73.1 0.0 7.6e-10 39.0 0.0 3.4 3 0 0 3 3 3 3 PAS fold HisKA PF00512.25 gi|330508806|ref|YP_004385234.1| - 1.2e-19 70.1 1.6 1.2e-18 66.9 0.3 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|330508806|ref|YP_004385234.1| - 2.3e-17 63.1 0.0 4.1e-07 30.2 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|330508806|ref|YP_004385234.1| - 3.4e-10 39.9 0.0 4.3e-07 29.9 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|330508806|ref|YP_004385234.1| - 1e-05 25.4 0.0 0.00033 20.6 0.0 2.6 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|330508806|ref|YP_004385234.1| - 0.00026 21.2 0.0 1.1 9.6 0.0 3.6 3 0 0 3 3 3 1 PAS fold PAS_10 PF13596.6 gi|330508806|ref|YP_004385234.1| - 0.0004 20.9 0.0 1.1 9.9 0.0 3.7 4 0 0 4 4 4 1 PAS domain Cache_3-Cache_2 PF17201.4 gi|330508806|ref|YP_004385234.1| - 0.001 18.4 0.0 0.0023 17.2 0.0 1.5 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain dCache_1 PF02743.18 gi|330508806|ref|YP_004385234.1| - 0.0024 17.7 0.2 1.1 9.0 0.1 2.4 1 1 1 2 2 2 2 Cache domain HATPase_c_3 PF13589.6 gi|330508806|ref|YP_004385234.1| - 0.0046 16.8 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Strabismus PF06638.11 gi|330508806|ref|YP_004385234.1| - 0.072 11.7 0.7 0.11 11.1 0.7 1.2 1 0 0 1 1 1 0 Strabismus protein DUF3801 PF12687.7 gi|330508806|ref|YP_004385234.1| - 0.36 10.9 1.3 3 7.9 0.0 2.7 4 0 0 4 4 3 0 Protein of unknown function (DUF3801) FmiP_Thoc5 PF09766.9 gi|330508806|ref|YP_004385234.1| - 1.3 8.3 3.7 13 5.0 0.2 2.2 2 0 0 2 2 2 0 Fms-interacting protein/Thoc5 Aminotran_1_2 PF00155.21 gi|330508807|ref|YP_004385235.1| - 7.8e-46 156.9 0.0 9.7e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Radical_SAM PF04055.21 gi|330508808|ref|YP_004385236.1| - 9e-07 29.4 0.0 2.5e-06 28.0 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|330508808|ref|YP_004385236.1| - 0.0037 17.4 0.0 0.0085 16.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain MS_channel PF00924.18 gi|330508809|ref|YP_004385237.1| - 2.7e-24 85.9 8.1 2.7e-24 85.9 8.1 2.2 2 1 0 2 2 2 1 Mechanosensitive ion channel DUF2515 PF10720.9 gi|330508809|ref|YP_004385237.1| - 4.3e-05 22.9 0.5 0.00076 18.8 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2515) AgrB PF04647.15 gi|330508809|ref|YP_004385237.1| - 0.048 13.0 16.9 0.072 12.4 16.9 1.2 1 0 0 1 1 1 0 Accessory gene regulator B TrkH PF02386.16 gi|330508810|ref|YP_004385238.1| - 3.6e-43 147.8 26.8 1.2e-40 139.5 26.8 3.0 1 1 0 1 1 1 1 Cation transport protein TMEM43 PF07787.12 gi|330508810|ref|YP_004385238.1| - 4.6 6.6 9.6 12 5.2 4.5 2.6 2 0 0 2 2 2 0 Transmembrane protein 43 DUF4969 PF16339.5 gi|330508811|ref|YP_004385239.1| - 0.01 16.2 1.9 0.012 16.0 0.8 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4969) MCU PF04678.13 gi|330508811|ref|YP_004385239.1| - 0.029 14.5 8.0 0.034 14.2 8.0 1.2 1 0 0 1 1 1 0 Mitochondrial calcium uniporter SesA PF17107.5 gi|330508811|ref|YP_004385239.1| - 0.057 13.6 7.8 0.07 13.3 7.8 1.1 1 0 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases DUF4407 PF14362.6 gi|330508811|ref|YP_004385239.1| - 0.063 12.6 11.1 0.084 12.2 11.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TRPM_tetra PF16519.5 gi|330508811|ref|YP_004385239.1| - 0.082 13.0 1.6 16 5.6 0.0 3.3 1 1 2 3 3 3 0 Tetramerisation domain of TRPM FixH PF05751.11 gi|330508811|ref|YP_004385239.1| - 0.087 12.8 4.4 0.12 12.3 4.4 1.3 1 0 0 1 1 1 0 FixH V_ATPase_I PF01496.19 gi|330508811|ref|YP_004385239.1| - 0.11 10.4 3.1 0.11 10.3 3.1 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family YscO-like PF16789.5 gi|330508811|ref|YP_004385239.1| - 0.27 11.3 19.0 0.058 13.4 11.4 2.0 1 1 1 2 2 2 0 YscO-like protein ThrE PF06738.12 gi|330508811|ref|YP_004385239.1| - 0.28 10.5 4.6 0.97 8.7 4.8 1.7 1 1 0 1 1 1 0 Putative threonine/serine exporter ERM PF00769.19 gi|330508811|ref|YP_004385239.1| - 0.29 10.9 21.6 0.38 10.5 21.6 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family CCDC53 PF10152.9 gi|330508811|ref|YP_004385239.1| - 0.32 11.4 9.9 0.39 11.1 9.9 1.1 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex UPF0242 PF06785.11 gi|330508811|ref|YP_004385239.1| - 0.32 11.1 4.9 0.42 10.7 4.9 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Presenilin PF01080.17 gi|330508811|ref|YP_004385239.1| - 0.33 9.7 5.1 0.41 9.4 5.1 1.1 1 0 0 1 1 1 0 Presenilin Spc7 PF08317.11 gi|330508811|ref|YP_004385239.1| - 0.43 9.4 11.9 0.59 9.0 11.9 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein FAD-SLDH PF12318.8 gi|330508811|ref|YP_004385239.1| - 0.82 9.7 10.5 1.1 9.4 10.5 1.2 1 0 0 1 1 1 0 Membrane bound FAD containing D-sorbitol dehydrogenase ParE_toxin PF05016.15 gi|330508811|ref|YP_004385239.1| - 0.91 10.2 2.9 1.8 9.3 2.7 1.7 1 1 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE TMPIT PF07851.13 gi|330508811|ref|YP_004385239.1| - 1 8.5 5.9 1.4 8.1 5.9 1.1 1 0 0 1 1 1 0 TMPIT-like protein AAA_13 PF13166.6 gi|330508811|ref|YP_004385239.1| - 1.1 7.8 9.5 1.2 7.6 9.5 1.0 1 0 0 1 1 1 0 AAA domain DUF3486 PF11985.8 gi|330508811|ref|YP_004385239.1| - 1.1 9.6 17.9 1.5 9.2 17.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3486) VSG_B PF13206.6 gi|330508811|ref|YP_004385239.1| - 1.2 8.3 15.6 1.6 7.9 15.6 1.1 1 0 0 1 1 1 0 Trypanosomal VSG domain Borrelia_P83 PF05262.11 gi|330508811|ref|YP_004385239.1| - 1.3 7.5 15.6 1.6 7.2 15.6 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein SMYLE_N PF18615.1 gi|330508811|ref|YP_004385239.1| - 1.4 8.4 7.0 1.7 8.1 7.0 1.0 1 0 0 1 1 1 0 Short myomegalin-like EB1 binding proteins, N-terminal domain ATP-synt_ab PF00006.25 gi|330508811|ref|YP_004385239.1| - 2 8.0 5.5 2.4 7.8 5.5 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Prominin PF05478.11 gi|330508811|ref|YP_004385239.1| - 2 6.2 5.3 2.3 6.1 5.3 1.1 1 0 0 1 1 1 0 Prominin TP53IP5 PF15331.6 gi|330508811|ref|YP_004385239.1| - 2.1 8.4 7.1 2.6 8.2 7.1 1.0 1 0 0 1 1 1 0 Cellular tumour antigen p53-inducible 5 NPV_P10 PF05531.12 gi|330508811|ref|YP_004385239.1| - 2.2 8.8 5.9 7 7.2 0.2 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein TPR_MLP1_2 PF07926.12 gi|330508811|ref|YP_004385239.1| - 2.7 8.1 23.5 3.7 7.6 23.5 1.1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein ISG65-75 PF11727.8 gi|330508811|ref|YP_004385239.1| - 2.9 7.0 21.3 5 6.3 20.2 1.7 1 1 1 2 2 2 0 Invariant surface glycoprotein MRFAP1 PF15155.6 gi|330508811|ref|YP_004385239.1| - 3.1 8.3 14.2 1.5 9.4 11.1 1.8 1 1 1 2 2 2 0 MORF4 family-associated protein1 CHDCT2 PF08074.11 gi|330508811|ref|YP_004385239.1| - 3.8 7.7 6.3 4.9 7.3 5.9 1.4 1 1 0 1 1 1 0 CHDCT2 (NUC038) domain DUF2203 PF09969.9 gi|330508811|ref|YP_004385239.1| - 4.4 8.1 10.6 44 4.8 10.6 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) XhlA PF10779.9 gi|330508811|ref|YP_004385239.1| - 7.3 6.9 12.1 11 6.3 1.6 2.9 1 1 1 2 2 2 0 Haemolysin XhlA GARP PF16731.5 gi|330508811|ref|YP_004385239.1| - 8.9 6.0 36.8 3.3e+03 -2.4 36.8 2.1 1 1 0 1 1 1 0 Glutamic acid/alanine-rich protein of Trypanosoma XRN_M PF17846.1 gi|330508811|ref|YP_004385239.1| - 9.5 5.1 7.1 10 4.9 7.1 1.0 1 0 0 1 1 1 0 Xrn1 helical domain DUF3357 PF11837.8 gi|330508811|ref|YP_004385239.1| - 9.6 6.7 11.9 10 6.6 7.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3357) TM2 PF05154.16 gi|330508812|ref|YP_004385240.1| - 6.1e-14 52.1 3.9 7.9e-14 51.7 3.9 1.2 1 0 0 1 1 1 1 TM2 domain DZR PF12773.7 gi|330508812|ref|YP_004385240.1| - 0.00063 19.7 1.0 0.00079 19.4 1.0 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|330508812|ref|YP_004385240.1| - 0.001 18.4 5.4 0.0015 17.8 5.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.9 gi|330508812|ref|YP_004385240.1| - 0.0077 16.3 6.4 0.011 15.8 6.4 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|330508812|ref|YP_004385240.1| - 5.8 7.0 7.5 2.8 8.0 2.0 2.2 1 1 1 2 2 2 0 PhnA Zinc-Ribbon Zn_peptidase PF04228.13 gi|330508813|ref|YP_004385241.1| - 1.2e-112 376.1 0.4 1.4e-112 375.9 0.4 1.0 1 0 0 1 1 1 1 Putative neutral zinc metallopeptidase YolD PF08863.10 gi|330508813|ref|YP_004385241.1| - 0.022 14.8 0.0 0.034 14.2 0.0 1.3 1 0 0 1 1 1 0 YolD-like protein Peptidase_M91 PF14891.6 gi|330508813|ref|YP_004385241.1| - 0.14 12.5 0.0 0.2 11.9 0.0 1.2 1 0 0 1 1 1 0 Effector protein OrfB_Zn_ribbon PF07282.11 gi|330508814|ref|YP_004385242.1| - 3.1e-22 78.3 0.1 8.4e-22 76.9 0.1 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330508814|ref|YP_004385242.1| - 4.3e-21 75.4 0.0 8.9e-21 74.3 0.0 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|330508814|ref|YP_004385242.1| - 1.4e-15 56.5 2.9 3.5e-15 55.2 2.9 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|330508814|ref|YP_004385242.1| - 0.0015 18.6 0.3 0.0027 17.7 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|330508814|ref|YP_004385242.1| - 0.06 12.9 0.5 0.47 10.0 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|330508814|ref|YP_004385242.1| - 0.12 12.1 0.8 0.2 11.3 0.8 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain C1_1 PF00130.22 gi|330508814|ref|YP_004385242.1| - 0.18 11.7 0.3 0.18 11.7 0.3 2.0 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.6 gi|330508814|ref|YP_004385242.1| - 0.22 11.0 0.9 1.2 8.6 0.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain RecR PF02132.15 gi|330508814|ref|YP_004385242.1| - 0.47 10.1 4.9 5.9 6.6 0.1 2.8 2 1 1 3 3 3 0 RecR protein RNA_pol_L_2 PF13656.6 gi|330508815|ref|YP_004385243.1| - 2e-18 65.9 0.0 2.8e-18 65.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|330508815|ref|YP_004385243.1| - 1.6e-05 24.3 0.0 2.3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain ECR1_N PF14382.6 gi|330508816|ref|YP_004385244.1| - 7.2e-10 38.5 0.1 1.3e-09 37.7 0.1 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region Auto_anti-p27 PF06677.12 gi|330508816|ref|YP_004385244.1| - 0.00097 19.2 1.5 0.0016 18.6 1.5 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NOB1_Zn_bind PF08772.11 gi|330508816|ref|YP_004385244.1| - 0.0083 16.3 0.7 0.016 15.3 0.7 1.4 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like EXOSC1 PF10447.9 gi|330508816|ref|YP_004385244.1| - 0.032 14.8 0.1 0.061 13.9 0.1 1.5 1 0 0 1 1 1 0 Exosome component EXOSC1/CSL4 DZR PF12773.7 gi|330508816|ref|YP_004385244.1| - 0.045 13.8 0.3 0.074 13.1 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.6 gi|330508816|ref|YP_004385244.1| - 0.064 13.3 0.1 0.1 12.7 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain HypA PF01155.19 gi|330508816|ref|YP_004385244.1| - 0.083 12.9 0.5 0.14 12.2 0.6 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ribosomal_L24 PF17136.4 gi|330508816|ref|YP_004385244.1| - 0.084 13.3 0.4 1.2 9.6 0.0 2.6 3 0 0 3 3 3 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 zf-RRN7 PF11781.8 gi|330508816|ref|YP_004385244.1| - 0.25 11.1 1.0 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_Tnp_IS1595 PF12760.7 gi|330508816|ref|YP_004385244.1| - 0.4 10.7 1.4 0.99 9.4 1.4 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF1610 PF07754.11 gi|330508816|ref|YP_004385244.1| - 4.9 7.2 6.4 12 5.9 5.5 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.6 gi|330508816|ref|YP_004385244.1| - 5.4 6.6 6.6 0.87 9.1 1.0 2.0 1 1 1 2 2 2 0 zinc-ribbon domain MTS PF05175.14 gi|330508817|ref|YP_004385245.1| - 1.8e-16 60.2 0.0 2.4e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|330508817|ref|YP_004385245.1| - 1.3e-13 51.0 0.1 2e-13 50.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330508817|ref|YP_004385245.1| - 1.5e-12 48.0 0.1 2.4e-12 47.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|330508817|ref|YP_004385245.1| - 6.7e-11 42.2 1.9 4.7e-10 39.5 1.9 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|330508817|ref|YP_004385245.1| - 1.8e-10 40.7 0.7 2.4e-10 40.3 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|330508817|ref|YP_004385245.1| - 1.7e-09 38.2 0.0 2.6e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|330508817|ref|YP_004385245.1| - 2.8e-06 27.1 0.0 3.9e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|330508817|ref|YP_004385245.1| - 7.5e-06 25.9 0.0 8.8e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|330508817|ref|YP_004385245.1| - 1.3e-05 24.8 0.0 1.9e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|330508817|ref|YP_004385245.1| - 2.4e-05 25.0 0.1 3.9e-05 24.3 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|330508817|ref|YP_004385245.1| - 0.0003 20.4 0.0 0.00046 19.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|330508817|ref|YP_004385245.1| - 0.00033 20.0 0.1 0.04 13.2 0.0 2.1 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|330508817|ref|YP_004385245.1| - 0.00041 20.4 0.0 0.00051 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|330508817|ref|YP_004385245.1| - 0.00047 19.8 0.0 0.00061 19.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|330508817|ref|YP_004385245.1| - 0.0097 15.8 0.1 0.015 15.2 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|330508817|ref|YP_004385245.1| - 0.01 15.6 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein N6_N4_Mtase PF01555.18 gi|330508817|ref|YP_004385245.1| - 0.015 15.0 0.0 0.17 11.6 0.0 2.0 2 0 0 2 2 2 0 DNA methylase Ubie_methyltran PF01209.18 gi|330508817|ref|YP_004385245.1| - 0.016 14.6 0.0 0.021 14.2 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|330508817|ref|YP_004385245.1| - 0.017 14.6 0.1 0.16 11.4 0.1 2.0 2 0 0 2 2 2 0 Putative methyltransferase PCMT PF01135.19 gi|330508817|ref|YP_004385245.1| - 0.019 14.7 0.0 0.025 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|330508817|ref|YP_004385245.1| - 0.066 12.3 0.0 0.08 12.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DOT1 PF08123.13 gi|330508817|ref|YP_004385245.1| - 0.091 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 N6_Mtase PF02384.16 gi|330508817|ref|YP_004385245.1| - 0.12 11.6 0.0 0.54 9.5 0.0 1.8 1 1 0 1 1 1 0 N-6 DNA Methylase Methyltransf_10 PF05971.12 gi|330508817|ref|YP_004385245.1| - 0.13 11.6 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 RNA methyltransferase TPR_12 PF13424.6 gi|330508818|ref|YP_004385246.1| - 1.4e-30 105.4 7.5 1.9e-11 44.1 0.2 5.6 4 2 2 6 6 6 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330508818|ref|YP_004385246.1| - 1.3e-21 75.4 4.5 0.00021 21.0 0.1 6.7 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330508818|ref|YP_004385246.1| - 1.3e-20 71.8 15.0 6.5e-05 22.7 0.1 7.6 8 0 0 8 8 6 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330508818|ref|YP_004385246.1| - 6.6e-20 69.6 10.0 0.0015 18.5 0.5 7.5 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330508818|ref|YP_004385246.1| - 2.8e-16 58.3 11.3 0.084 13.1 0.0 7.3 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330508818|ref|YP_004385246.1| - 5.6e-13 48.3 17.0 0.0054 16.6 0.1 7.7 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|330508818|ref|YP_004385246.1| - 6.3e-09 35.6 2.3 0.00048 19.6 0.1 2.9 2 1 1 3 3 3 2 MalT-like TPR region TPR_11 PF13414.6 gi|330508818|ref|YP_004385246.1| - 5.8e-07 29.1 1.1 0.0001 21.9 0.0 3.9 3 2 0 3 3 3 1 TPR repeat TPR_14 PF13428.6 gi|330508818|ref|YP_004385246.1| - 2.3e-06 27.9 18.8 0.21 12.5 0.0 8.0 4 2 5 9 9 7 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330508818|ref|YP_004385246.1| - 1.4e-05 25.7 13.3 0.065 13.9 2.9 6.1 4 2 2 6 6 6 2 Tetratricopeptide repeat RPN7 PF10602.9 gi|330508818|ref|YP_004385246.1| - 2.1e-05 24.3 1.4 0.0022 17.7 0.1 3.9 4 0 0 4 4 3 1 26S proteasome subunit RPN7 SNAP PF14938.6 gi|330508818|ref|YP_004385246.1| - 0.00012 21.6 8.4 0.0026 17.3 0.3 3.4 2 1 1 4 4 4 2 Soluble NSF attachment protein, SNAP TPR_6 PF13174.6 gi|330508818|ref|YP_004385246.1| - 0.00048 20.6 11.9 13 6.6 0.0 7.0 7 0 0 7 7 7 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330508818|ref|YP_004385246.1| - 0.0015 18.7 4.0 0.91 10.1 0.2 4.7 4 0 0 4 4 4 1 Tetratricopeptide repeat Coat_F PF07875.12 gi|330508818|ref|YP_004385246.1| - 0.022 15.0 0.0 0.1 12.8 0.0 2.1 2 0 0 2 2 1 0 Coat F domain SPO22 PF08631.10 gi|330508818|ref|YP_004385246.1| - 0.029 13.9 5.6 1.7 8.1 0.0 3.1 2 1 1 3 3 3 0 Meiosis protein SPO22/ZIP4 like Clathrin PF00637.20 gi|330508818|ref|YP_004385246.1| - 0.055 13.3 0.3 11 5.9 0.0 3.2 2 1 1 3 3 3 0 Region in Clathrin and VPS DUF4810 PF16068.5 gi|330508818|ref|YP_004385246.1| - 0.071 13.7 0.1 37 5.0 0.0 3.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4810) TPR_9 PF13371.6 gi|330508818|ref|YP_004385246.1| - 0.089 12.9 10.0 2 8.7 0.1 5.5 4 2 1 5 5 5 0 Tetratricopeptide repeat TAP_C PF03943.13 gi|330508818|ref|YP_004385246.1| - 0.096 12.3 0.0 7.1 6.3 0.0 3.1 3 0 0 3 3 3 0 TAP C-terminal domain DUF2508 PF10704.9 gi|330508818|ref|YP_004385246.1| - 0.19 11.9 0.7 2.3 8.4 0.0 3.1 4 0 0 4 4 2 0 Protein of unknown function (DUF2508) eRF1_2 PF03464.15 gi|330508819|ref|YP_004385247.1| - 4.9e-43 146.6 0.0 7.6e-43 146.0 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|330508819|ref|YP_004385247.1| - 2.6e-30 105.2 0.1 5.1e-30 104.3 0.1 1.5 1 0 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|330508819|ref|YP_004385247.1| - 1.4e-13 51.2 0.0 2.5e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|330508819|ref|YP_004385247.1| - 3e-13 49.9 0.0 5.9e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|330508819|ref|YP_004385247.1| - 2.4e-11 44.1 0.0 5.3e-11 42.9 0.0 1.5 1 1 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor RNA_binding PF01877.17 gi|330508820|ref|YP_004385248.1| - 2.7e-11 43.8 0.0 2.2e-10 40.8 0.0 2.0 1 1 0 1 1 1 1 RNA binding T2SSM PF04612.12 gi|330508820|ref|YP_004385248.1| - 0.0091 16.1 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M AP_endonuc_2 PF01261.24 gi|330508821|ref|YP_004385249.1| - 1.9e-29 102.6 0.5 2.7e-29 102.1 0.3 1.3 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Translin PF01997.16 gi|330508822|ref|YP_004385250.1| - 1e-10 41.9 0.1 7.6e-10 39.1 0.1 1.9 1 1 0 1 1 1 1 Translin family DUF2576 PF10845.8 gi|330508822|ref|YP_004385250.1| - 0.042 13.5 0.7 1.8 8.3 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2576) UBA_4 PF14555.6 gi|330508822|ref|YP_004385250.1| - 0.05 13.4 0.1 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 UBA-like domain tRNA-synt_2d PF01409.20 gi|330508823|ref|YP_004385251.1| - 5.6e-51 173.4 0.0 5.4e-48 163.6 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|330508823|ref|YP_004385251.1| - 9.5e-15 54.4 0.2 2.7e-14 53.0 0.2 1.8 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|330508823|ref|YP_004385251.1| - 9.9e-12 44.7 0.0 3.9e-08 33.0 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|330508823|ref|YP_004385251.1| - 0.046 12.8 0.0 14 4.7 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.25 gi|330508823|ref|YP_004385251.1| - 0.12 12.3 0.1 0.24 11.3 0.1 1.6 1 1 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) Lambda_Bor PF06291.11 gi|330508823|ref|YP_004385251.1| - 0.16 12.0 0.1 0.39 10.8 0.1 1.6 1 0 0 1 1 1 0 Bor protein Rib_5-P_isom_A PF06026.14 gi|330508824|ref|YP_004385252.1| - 2.2e-60 203.2 0.0 2.7e-60 202.9 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|330508824|ref|YP_004385252.1| - 1.2e-07 31.8 0.4 1e-05 25.5 0.4 2.2 1 1 0 1 1 1 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|330508824|ref|YP_004385252.1| - 0.0032 16.7 0.3 0.007 15.5 0.1 1.6 1 1 1 2 2 2 1 Putative sugar-binding domain Cupin_2 PF07883.11 gi|330508825|ref|YP_004385253.1| - 5.2e-10 38.9 0.0 7.4e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|330508825|ref|YP_004385253.1| - 3.6e-07 30.2 0.0 4.4e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|330508825|ref|YP_004385253.1| - 1.1e-05 25.0 0.0 1.6e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|330508825|ref|YP_004385253.1| - 0.0013 18.5 0.0 0.0014 18.4 0.0 1.2 1 0 0 1 1 1 1 Cupin CENP-C_C PF11699.8 gi|330508825|ref|YP_004385253.1| - 0.0022 18.2 0.0 0.0032 17.7 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like EutQ PF06249.12 gi|330508825|ref|YP_004385253.1| - 0.016 15.0 0.0 0.026 14.3 0.0 1.5 1 1 0 1 1 1 0 Ethanolamine utilisation protein EutQ Ectoine_synth PF06339.12 gi|330508825|ref|YP_004385253.1| - 0.019 15.2 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 Ectoine synthase ARD PF03079.14 gi|330508825|ref|YP_004385253.1| - 0.051 13.7 0.0 0.065 13.4 0.0 1.1 1 0 0 1 1 1 0 ARD/ARD' family AraC_binding_2 PF14525.6 gi|330508825|ref|YP_004385253.1| - 0.052 13.2 0.0 0.059 13.1 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain HemeBinding_Shp PF11545.8 gi|330508825|ref|YP_004385253.1| - 0.073 13.1 0.0 0.089 12.8 0.0 1.2 1 0 0 1 1 1 0 Cell surface heme-binding protein Shp Ppnp PF06865.11 gi|330508825|ref|YP_004385253.1| - 0.077 13.4 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase Lactamase_B_2 PF12706.7 gi|330508826|ref|YP_004385254.1| - 2.5e-19 69.6 0.1 3.1e-19 69.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|330508826|ref|YP_004385254.1| - 1.4e-08 35.0 2.0 4.9e-07 29.9 0.3 2.6 2 1 0 3 3 3 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|330508826|ref|YP_004385254.1| - 0.0039 17.1 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Hydrolase_3 PF08282.12 gi|330508827|ref|YP_004385255.1| - 1.8e-25 90.2 0.0 1.4e-15 57.7 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|330508827|ref|YP_004385255.1| - 4.8e-07 30.3 0.2 0.0033 17.8 0.0 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|330508827|ref|YP_004385255.1| - 0.00025 20.3 0.0 0.0015 17.7 0.0 1.9 2 0 0 2 2 2 1 Trehalose-phosphatase S6PP PF05116.13 gi|330508827|ref|YP_004385255.1| - 0.0029 17.2 0.0 0.026 14.1 0.0 2.0 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|330508827|ref|YP_004385255.1| - 0.0055 17.1 0.1 0.18 12.2 0.0 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase CxxCxxCC PF03692.15 gi|330508828|ref|YP_004385256.1| - 2e-13 50.8 0.7 2e-13 50.8 0.7 1.9 2 0 0 2 2 2 1 Putative zinc- or iron-chelating domain OEP PF02321.18 gi|330508829|ref|YP_004385257.1| - 0.00076 19.3 2.2 0.00076 19.3 2.2 1.9 2 0 0 2 2 2 1 Outer membrane efflux protein TFIIIC_sub6 PF10419.9 gi|330508829|ref|YP_004385257.1| - 0.1 12.5 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 TFIIIC subunit triple barrel domain HTH_45 PF14947.6 gi|330508830|ref|YP_004385258.1| - 2.9e-15 56.0 0.0 3.5e-15 55.7 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|330508830|ref|YP_004385258.1| - 0.0017 18.1 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HxlR PF01638.17 gi|330508830|ref|YP_004385258.1| - 0.058 13.3 0.0 0.083 12.8 0.0 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|330508830|ref|YP_004385258.1| - 0.11 13.0 0.0 0.14 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Ribosomal_L15e PF00827.17 gi|330508832|ref|YP_004385260.1| - 1.1e-77 260.1 11.1 1.2e-77 260.0 11.1 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.17 gi|330508833|ref|YP_004385261.1| - 2.7e-32 111.5 0.0 3.6e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 RNA binding DUF2267 PF10025.9 gi|330508833|ref|YP_004385261.1| - 0.071 13.4 0.1 0.1 12.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) RNase_P_p30 PF01876.16 gi|330508834|ref|YP_004385262.1| - 1.6e-31 109.4 0.0 2.1e-31 109.1 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 RNase_P_Rpp14 PF01900.19 gi|330508835|ref|YP_004385263.1| - 1e-15 57.8 0.1 1.7e-15 57.1 0.0 1.4 2 0 0 2 2 2 1 Rpp14/Pop5 family KH_6 PF15985.5 gi|330508836|ref|YP_004385264.1| - 1.4e-09 38.1 0.4 2.5e-09 37.4 0.4 1.3 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|330508836|ref|YP_004385264.1| - 1.8e-06 27.7 0.1 3.3e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|330508836|ref|YP_004385264.1| - 4.2e-06 27.0 0.0 1.5e-05 25.2 0.0 1.9 2 0 0 2 2 2 1 S1 RNA binding domain ECR1_N PF14382.6 gi|330508836|ref|YP_004385264.1| - 5.3e-06 26.1 0.0 1.3e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_2 PF07650.17 gi|330508836|ref|YP_004385264.1| - 5.3e-05 23.0 0.3 9.9e-05 22.1 0.3 1.4 1 0 0 1 1 1 1 KH domain Alpha-amyl_C PF09071.10 gi|330508836|ref|YP_004385264.1| - 0.04 13.8 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 Alpha-amylase, C terminal RNase_PH PF01138.21 gi|330508837|ref|YP_004385265.1| - 4.5e-33 114.5 0.0 7e-33 113.9 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|330508837|ref|YP_004385265.1| - 2.9e-16 59.2 0.1 5.3e-16 58.4 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|330508838|ref|YP_004385266.1| - 4.9e-26 91.8 0.0 7.2e-26 91.3 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|330508838|ref|YP_004385266.1| - 3.8e-08 33.3 0.2 6.7e-08 32.5 0.2 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.19 gi|330508839|ref|YP_004385267.1| - 2.3e-30 104.5 1.5 2.6e-30 104.3 1.5 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.11 gi|330508839|ref|YP_004385267.1| - 8.7e-05 22.4 1.4 0.00013 21.8 1.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Elf1 PF05129.13 gi|330508839|ref|YP_004385267.1| - 0.0025 17.8 0.3 0.0046 17.0 0.3 1.5 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.7 gi|330508839|ref|YP_004385267.1| - 0.0048 16.8 4.0 0.0075 16.2 4.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|330508839|ref|YP_004385267.1| - 0.0054 16.8 1.2 0.23 11.6 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|330508839|ref|YP_004385267.1| - 0.018 14.9 3.1 1.1 9.2 2.8 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit RPA_interact_C PF14768.6 gi|330508839|ref|YP_004385267.1| - 0.022 15.3 0.1 0.031 14.8 0.1 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Zn_ribbon_SprT PF17283.2 gi|330508839|ref|YP_004385267.1| - 0.025 14.5 3.1 0.055 13.4 3.1 1.6 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Lar_restr_allev PF14354.6 gi|330508839|ref|YP_004385267.1| - 0.025 14.9 0.4 0.039 14.3 0.4 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.10 gi|330508839|ref|YP_004385267.1| - 0.026 14.2 0.4 0.04 13.6 0.4 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain C1_1 PF00130.22 gi|330508839|ref|YP_004385267.1| - 0.076 12.9 0.8 0.13 12.2 0.8 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Sgf11 PF08209.11 gi|330508839|ref|YP_004385267.1| - 0.077 12.6 1.0 3.6 7.2 0.3 2.5 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) CpXC PF14353.6 gi|330508839|ref|YP_004385267.1| - 0.079 13.0 1.5 1.3 9.0 0.1 2.1 1 1 1 2 2 2 0 CpXC protein TF_Zn_Ribbon PF08271.12 gi|330508839|ref|YP_004385267.1| - 0.098 12.2 0.8 0.16 11.5 0.8 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zf-C2H2_3 PF13878.6 gi|330508839|ref|YP_004385267.1| - 0.16 11.8 0.5 15 5.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_10 PF10058.9 gi|330508839|ref|YP_004385267.1| - 0.16 11.7 3.2 2.7 7.8 0.2 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Rubredoxin PF00301.20 gi|330508839|ref|YP_004385267.1| - 0.18 11.9 2.7 5.5 7.1 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin HypA PF01155.19 gi|330508839|ref|YP_004385267.1| - 0.18 11.8 2.1 3.8 7.6 0.3 1.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 gi|330508839|ref|YP_004385267.1| - 0.19 11.8 3.1 0.77 9.9 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF4379 PF14311.6 gi|330508839|ref|YP_004385267.1| - 0.21 12.0 4.6 1.3 9.5 0.8 2.3 1 1 1 2 2 2 0 Probable Zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|330508839|ref|YP_004385267.1| - 0.23 10.9 4.1 1.2 8.7 4.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|330508839|ref|YP_004385267.1| - 0.24 11.1 5.6 1.3 8.8 0.7 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|330508839|ref|YP_004385267.1| - 0.27 11.3 6.1 3.5 7.8 6.1 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Anti-TRAP PF15777.5 gi|330508839|ref|YP_004385267.1| - 0.28 11.2 1.6 0.55 10.2 0.1 2.0 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-C2H2_11 PF16622.5 gi|330508839|ref|YP_004385267.1| - 0.3 10.9 2.3 12 5.8 0.2 2.3 2 0 0 2 2 2 0 zinc-finger C2H2-type Mut7-C PF01927.16 gi|330508839|ref|YP_004385267.1| - 0.35 11.0 2.7 1.6 8.8 0.3 2.0 1 1 1 2 2 2 0 Mut7-C RNAse domain zinc_ribbon_2 PF13240.6 gi|330508839|ref|YP_004385267.1| - 0.37 10.6 4.3 3.2 7.6 0.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|330508839|ref|YP_004385267.1| - 0.48 10.9 4.1 5.1 7.7 0.3 2.3 1 1 1 2 2 2 0 Zinc-finger double domain Ogr_Delta PF04606.12 gi|330508839|ref|YP_004385267.1| - 0.51 10.4 5.9 3.4 7.7 4.1 2.7 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C2H2 PF00096.26 gi|330508839|ref|YP_004385267.1| - 0.88 10.2 3.7 18 6.0 0.3 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type DNA_RNApol_7kD PF03604.13 gi|330508840|ref|YP_004385268.1| - 2.8e-09 36.5 8.8 3.8e-09 36.1 8.8 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|330508840|ref|YP_004385268.1| - 7.3e-05 22.3 1.1 0.22 11.1 0.0 2.1 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|330508840|ref|YP_004385268.1| - 0.00011 21.5 0.2 0.0091 15.4 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|330508840|ref|YP_004385268.1| - 0.00035 20.4 0.8 0.00045 20.1 0.8 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|330508840|ref|YP_004385268.1| - 0.0034 17.4 0.5 0.0034 17.4 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2HC5 PF06221.13 gi|330508840|ref|YP_004385268.1| - 0.0042 17.0 0.2 0.0046 16.9 0.2 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type zinc_ribbon_2 PF13240.6 gi|330508840|ref|YP_004385268.1| - 0.0053 16.4 2.4 0.011 15.4 2.4 1.5 1 1 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|330508840|ref|YP_004385268.1| - 0.0067 16.5 3.6 0.011 15.8 3.6 1.5 1 1 0 1 1 1 1 Zinc ribbon domain DUF951 PF06107.11 gi|330508840|ref|YP_004385268.1| - 0.007 16.3 4.5 0.031 14.2 0.4 2.0 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF951) Zn_Tnp_IS1595 PF12760.7 gi|330508840|ref|YP_004385268.1| - 0.014 15.3 3.0 0.24 11.4 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|330508840|ref|YP_004385268.1| - 0.016 15.1 2.1 0.052 13.4 0.2 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF2072 PF09845.9 gi|330508840|ref|YP_004385268.1| - 0.026 14.8 0.5 0.026 14.8 0.5 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein DZR PF12773.7 gi|330508840|ref|YP_004385268.1| - 0.03 14.3 0.8 0.14 12.2 1.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon Spt4 PF06093.13 gi|330508840|ref|YP_004385268.1| - 0.031 14.4 0.3 0.036 14.1 0.3 1.1 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger TFIIS_C PF01096.18 gi|330508840|ref|YP_004385268.1| - 0.033 14.0 2.4 4.5 7.2 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) C1_1 PF00130.22 gi|330508840|ref|YP_004385268.1| - 0.052 13.4 1.2 0.09 12.7 1.3 1.4 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_4 PF13717.6 gi|330508840|ref|YP_004385268.1| - 0.052 13.5 4.3 1.3 9.0 4.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|330508840|ref|YP_004385268.1| - 0.052 13.1 2.8 0.078 12.5 2.8 1.3 1 1 0 1 1 1 0 TFIIB zinc-binding YacG PF03884.14 gi|330508840|ref|YP_004385268.1| - 0.09 12.5 0.7 2.3 8.0 0.1 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG CpXC PF14353.6 gi|330508840|ref|YP_004385268.1| - 0.095 12.7 1.3 0.44 10.6 0.1 1.9 1 1 1 2 2 2 0 CpXC protein DUF2197 PF09963.9 gi|330508840|ref|YP_004385268.1| - 0.13 12.5 2.9 2.3 8.5 0.5 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) DUF3268 PF11672.8 gi|330508840|ref|YP_004385268.1| - 0.14 12.4 2.0 0.72 10.2 0.1 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain Desulfoferrod_N PF06397.12 gi|330508840|ref|YP_004385268.1| - 0.53 9.9 5.7 0.33 10.6 0.8 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Zn_ribbon_SprT PF17283.2 gi|330508840|ref|YP_004385268.1| - 1.5 8.8 8.5 30 4.6 8.4 2.1 1 1 0 1 1 1 0 SprT-like zinc ribbon domain UPF0547 PF10571.9 gi|330508840|ref|YP_004385268.1| - 3.4 7.8 7.2 18 5.6 7.2 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Pcc1 PF09341.10 gi|330508842|ref|YP_004385270.1| - 1.6e-05 25.0 0.0 1.9e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.20 gi|330508843|ref|YP_004385271.1| - 2.5e-23 82.0 18.6 2.8e-23 81.9 18.6 1.0 1 0 0 1 1 1 1 Prefoldin subunit FliD_C PF07195.12 gi|330508843|ref|YP_004385271.1| - 0.018 14.5 3.2 0.027 13.9 3.2 1.2 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus DUF4795 PF16043.5 gi|330508843|ref|YP_004385271.1| - 0.022 14.4 7.6 0.03 13.9 7.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) DUF5503 PF17607.2 gi|330508843|ref|YP_004385271.1| - 0.045 14.1 0.0 0.067 13.5 0.0 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5503) CinA_KH PF18146.1 gi|330508843|ref|YP_004385271.1| - 0.085 13.0 2.3 0.33 11.1 0.1 2.3 2 1 0 2 2 2 0 Damage-inducible protein CinA KH domain DegQ PF08181.11 gi|330508843|ref|YP_004385271.1| - 0.22 11.6 0.1 0.22 11.6 0.1 2.6 2 1 1 3 3 2 0 DegQ (SacQ) family LRRFIP PF09738.9 gi|330508843|ref|YP_004385271.1| - 0.38 10.2 10.8 0.47 9.9 10.8 1.0 1 0 0 1 1 1 0 LRRFIP family Fib_alpha PF08702.10 gi|330508843|ref|YP_004385271.1| - 0.47 10.6 8.4 4.7 7.4 8.5 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Phage_Mu_F PF04233.14 gi|330508843|ref|YP_004385271.1| - 0.84 10.4 5.6 10 6.9 0.8 2.0 1 1 1 2 2 2 0 Phage Mu protein F like protein DUF3584 PF12128.8 gi|330508843|ref|YP_004385271.1| - 0.91 7.0 12.4 1.5 6.2 12.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) DUF724 PF05266.14 gi|330508843|ref|YP_004385271.1| - 0.98 9.2 10.0 1.2 8.9 10.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Baculo_PEP_C PF04513.12 gi|330508843|ref|YP_004385271.1| - 1.7 8.7 9.6 6.4 6.8 4.8 2.1 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Phage_GP20 PF06810.11 gi|330508843|ref|YP_004385271.1| - 2 8.2 16.1 2.4 7.9 3.3 2.1 1 1 1 2 2 2 0 Phage minor structural protein GP20 DUF3450 PF11932.8 gi|330508843|ref|YP_004385271.1| - 2.5 7.4 18.8 0.39 10.0 7.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Laminin_II PF06009.12 gi|330508843|ref|YP_004385271.1| - 2.6 8.1 8.7 19 5.2 8.7 1.9 1 1 0 1 1 1 0 Laminin Domain II JIP_LZII PF16471.5 gi|330508843|ref|YP_004385271.1| - 2.7 8.3 13.3 1.2 9.4 3.5 2.2 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II Herpes_UL6 PF01763.16 gi|330508843|ref|YP_004385271.1| - 3.8 5.9 7.7 7.2 5.0 7.7 1.5 1 1 0 1 1 1 0 Herpesvirus UL6 like DUF2098 PF09871.9 gi|330508843|ref|YP_004385271.1| - 4.3 7.7 7.4 3.8 7.9 3.4 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2098) DUF1664 PF07889.12 gi|330508843|ref|YP_004385271.1| - 6.1 6.9 9.8 4.4 7.4 1.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.22 gi|330508843|ref|YP_004385271.1| - 7.2 6.9 14.7 3 8.1 4.6 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain WXG100 PF06013.12 gi|330508843|ref|YP_004385271.1| - 7.5 6.9 12.7 16 5.8 5.5 2.3 2 0 0 2 2 2 0 Proteins of 100 residues with WXG CooT PF10133.9 gi|330508844|ref|YP_004385272.1| - 1.3e-19 70.2 2.2 1.4e-19 70.1 2.2 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT DS PF01916.17 gi|330508846|ref|YP_004385274.1| - 7.4e-91 304.4 0.0 8.5e-91 304.2 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase OrfB_Zn_ribbon PF07282.11 gi|330508847|ref|YP_004385275.1| - 5.3e-19 67.9 1.2 2.4e-18 65.8 0.1 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330508847|ref|YP_004385275.1| - 7.9e-09 35.8 0.0 1.3e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Probable transposase DUF334 PF03904.13 gi|330508847|ref|YP_004385275.1| - 0.028 13.9 0.7 0.14 11.7 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF334) Orn_Arg_deC_N PF02784.16 gi|330508848|ref|YP_004385276.1| - 1.7e-41 142.2 0.0 2.4e-41 141.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Arg_decarb_HB PF17810.1 gi|330508848|ref|YP_004385276.1| - 2.6e-18 66.0 0.3 8.7e-18 64.4 0.1 2.0 2 0 0 2 2 2 1 Arginine decarboxylase helical bundle domain Arg_decarbox_C PF17944.1 gi|330508848|ref|YP_004385276.1| - 0.014 16.0 0.5 0.052 14.1 0.1 2.2 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension TPP_enzyme_C PF02775.21 gi|330508850|ref|YP_004385278.1| - 2.7e-09 37.0 0.2 9.9e-09 35.1 0.2 2.0 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transket_pyr PF02779.24 gi|330508850|ref|YP_004385278.1| - 0.043 13.5 0.0 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 Transketolase, pyrimidine binding domain POR_N PF01855.19 gi|330508850|ref|YP_004385278.1| - 0.051 13.3 0.0 4.6 6.9 0.0 2.2 2 0 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.18 gi|330508850|ref|YP_004385278.1| - 0.79 9.3 3.0 0.65 9.6 0.1 2.3 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF1743 PF08489.11 gi|330508851|ref|YP_004385279.1| - 1.3e-10 41.4 0.0 9.6e-08 32.1 0.0 3.3 2 1 0 2 2 2 2 Domain of unknown function (DUF1743) PemK_toxin PF02452.17 gi|330508853|ref|YP_004385281.1| - 2.5e-07 31.1 0.0 2.8e-07 30.9 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system TruD PF01142.18 gi|330508854|ref|YP_004385282.1| - 1.8e-155 517.9 0.0 2e-155 517.7 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.16 gi|330508855|ref|YP_004385283.1| - 8.2e-38 129.3 0.1 9e-38 129.2 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Toprim_4 PF13662.6 gi|330508856|ref|YP_004385284.1| - 1.9e-12 47.5 0.3 5.5e-12 46.0 0.3 1.9 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|330508856|ref|YP_004385284.1| - 9.3e-07 29.2 0.0 2.3e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|330508856|ref|YP_004385284.1| - 1.9e-05 24.8 0.9 0.00023 21.4 0.2 2.9 2 2 0 2 2 2 1 Toprim domain Metallophos_2 PF12850.7 gi|330508856|ref|YP_004385284.1| - 0.17 12.0 0.1 0.31 11.2 0.1 1.5 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain NMD3 PF04981.13 gi|330508857|ref|YP_004385285.1| - 7.7e-46 156.5 0.0 9.6e-46 156.2 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|330508857|ref|YP_004385285.1| - 0.0098 15.9 4.4 0.047 13.7 2.8 2.6 2 1 0 2 2 2 1 Double zinc ribbon FeoA PF04023.14 gi|330508857|ref|YP_004385285.1| - 0.061 13.6 1.2 5.9 7.2 0.2 2.6 2 0 0 2 2 2 0 FeoA domain zf-ribbon_3 PF13248.6 gi|330508857|ref|YP_004385285.1| - 0.13 11.7 9.8 5.9 6.4 0.1 2.9 2 1 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|330508857|ref|YP_004385285.1| - 3 7.3 9.9 2.7 7.4 1.1 3.0 3 0 0 3 3 3 0 Transcription factor zinc-finger RecR PF02132.15 gi|330508857|ref|YP_004385285.1| - 3.2 7.4 10.3 0.3 10.7 1.1 3.2 3 0 0 3 3 3 0 RecR protein zf-NADH-PPase PF09297.11 gi|330508857|ref|YP_004385285.1| - 5.5 6.7 7.5 5.3 6.8 0.1 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF424 PF04242.13 gi|330508858|ref|YP_004385286.1| - 4.8e-24 84.4 0.0 6.6e-24 84.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Oxidored_q6 PF01058.22 gi|330508858|ref|YP_004385286.1| - 0.053 13.4 0.0 0.065 13.1 0.0 1.1 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase, 20 Kd subunit MCM PF00493.23 gi|330508859|ref|YP_004385287.1| - 4.7e-97 323.5 0.0 6.7e-97 323.0 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|330508859|ref|YP_004385287.1| - 2.4e-33 114.7 0.0 4.1e-33 113.9 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|330508859|ref|YP_004385287.1| - 3.4e-27 94.7 0.1 1e-26 93.2 0.0 1.9 2 0 0 2 2 2 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|330508859|ref|YP_004385287.1| - 7.6e-09 35.2 0.1 1.3e-06 28.0 0.0 2.3 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI MCM_N PF14551.6 gi|330508859|ref|YP_004385287.1| - 1.5e-07 32.0 0.1 2.2e-06 28.2 0.1 2.8 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.14 gi|330508859|ref|YP_004385287.1| - 2.4e-06 27.6 0.0 6.4e-06 26.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|330508859|ref|YP_004385287.1| - 0.00025 20.9 0.0 0.00078 19.3 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|330508859|ref|YP_004385287.1| - 0.0018 18.0 0.0 0.019 14.7 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|330508859|ref|YP_004385287.1| - 0.097 13.1 0.1 0.34 11.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|330508859|ref|YP_004385287.1| - 0.13 12.7 0.0 0.54 10.6 0.0 2.1 1 0 0 1 1 1 0 AAA ATPase domain RuvB_N PF05496.12 gi|330508859|ref|YP_004385287.1| - 0.15 11.8 0.3 1.5 8.5 0.3 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NfeD PF01957.18 gi|330508860|ref|YP_004385288.1| - 1.1e-10 41.7 0.1 4.7e-10 39.7 0.1 2.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.16 gi|330508860|ref|YP_004385288.1| - 0.03 13.3 0.8 0.046 12.7 0.8 1.3 1 0 0 1 1 1 0 Serine dehydrogenase proteinase FMN_dh PF01070.18 gi|330508860|ref|YP_004385288.1| - 0.1 11.6 0.0 0.16 10.9 0.0 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Band_7 PF01145.25 gi|330508861|ref|YP_004385289.1| - 6.1e-37 127.3 2.0 9.4e-37 126.7 2.0 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|330508861|ref|YP_004385289.1| - 1.3e-06 28.3 0.6 2.1e-06 27.6 0.1 1.7 2 0 0 2 2 2 1 SPFH domain-Band 7 family Ground-like PF04155.18 gi|330508861|ref|YP_004385289.1| - 0.071 13.8 0.0 0.14 12.8 0.0 1.5 1 0 0 1 1 1 0 Ground-like domain DUF5402 PF17393.2 gi|330508861|ref|YP_004385289.1| - 0.43 10.5 2.9 3.5 7.6 0.3 2.5 2 1 0 2 2 2 0 Family of unknown function (DUF5402) Ribosomal_S27 PF01599.19 gi|330508862|ref|YP_004385290.1| - 1.1e-18 67.2 3.0 1.4e-18 66.8 3.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|330508862|ref|YP_004385290.1| - 0.00037 20.6 1.3 0.00053 20.1 1.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e DUF1451 PF07295.11 gi|330508862|ref|YP_004385290.1| - 0.0039 17.2 0.7 0.0042 17.1 0.7 1.2 1 0 0 1 1 1 1 Zinc-ribbon containing domain TF_Zn_Ribbon PF08271.12 gi|330508862|ref|YP_004385290.1| - 0.024 14.1 2.6 0.04 13.5 2.6 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|330508862|ref|YP_004385290.1| - 0.03 14.1 3.2 0.92 9.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|330508862|ref|YP_004385290.1| - 0.034 14.3 1.6 0.8 9.9 0.4 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.16 gi|330508862|ref|YP_004385290.1| - 0.066 13.1 1.2 0.15 12.0 1.2 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|330508862|ref|YP_004385290.1| - 0.11 12.2 5.0 0.21 11.3 5.0 1.5 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|330508862|ref|YP_004385290.1| - 0.16 11.9 5.0 1.3 9.0 4.9 2.0 1 1 1 2 2 2 0 Nudix N-terminal DUF2387 PF09526.10 gi|330508862|ref|YP_004385290.1| - 0.17 12.0 1.3 0.33 11.1 1.3 1.5 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.6 gi|330508862|ref|YP_004385290.1| - 0.23 10.9 6.7 0.54 9.7 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|330508862|ref|YP_004385290.1| - 0.55 10.2 5.2 5.9 7.0 5.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|330508862|ref|YP_004385290.1| - 0.63 9.6 2.1 11 5.7 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger Ribosomal_S24e PF01282.19 gi|330508863|ref|YP_004385291.1| - 3.3e-25 87.8 0.7 4.2e-25 87.5 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF1198 PF06711.11 gi|330508863|ref|YP_004385291.1| - 0.019 15.0 0.1 0.024 14.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1198) DUF359 PF04019.12 gi|330508864|ref|YP_004385292.1| - 6.2e-42 142.2 0.1 8.4e-42 141.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) VRR_NUC PF08774.11 gi|330508864|ref|YP_004385292.1| - 0.0016 18.4 0.0 0.0023 18.0 0.0 1.4 1 0 0 1 1 1 1 VRR-NUC domain CRS1_YhbY PF01985.21 gi|330508864|ref|YP_004385292.1| - 0.02 15.1 0.1 0.067 13.4 0.1 1.9 2 1 0 2 2 2 0 CRS1 / YhbY (CRM) domain Spt4 PF06093.13 gi|330508865|ref|YP_004385293.1| - 2.3e-14 53.3 0.2 2.9e-14 52.9 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|330508865|ref|YP_004385293.1| - 0.0027 17.2 2.9 0.0039 16.7 2.9 1.2 1 0 0 1 1 1 1 RecR protein Prok-RING_4 PF14447.6 gi|330508865|ref|YP_004385293.1| - 0.061 13.2 1.6 0.091 12.6 1.6 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 SHS2_Rpb7-N PF03876.17 gi|330508866|ref|YP_004385294.1| - 3.6e-18 65.7 0.0 5.8e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|330508866|ref|YP_004385294.1| - 6.7e-13 48.8 0.1 1.4e-12 47.8 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|330508866|ref|YP_004385294.1| - 0.00023 21.4 0.2 0.00056 20.2 0.2 1.6 1 1 0 1 1 1 1 RNA polymerase III subunit Rpc25 S1_2 PF13509.6 gi|330508866|ref|YP_004385294.1| - 0.05 13.7 0.0 0.28 11.3 0.0 2.1 1 1 0 1 1 1 0 S1 domain PIN_9 PF18477.1 gi|330508867|ref|YP_004385295.1| - 5.3e-36 123.4 0.0 6.3e-36 123.2 0.0 1.0 1 0 0 1 1 1 1 PIN like domain DUF5615 PF18480.1 gi|330508867|ref|YP_004385295.1| - 0.061 13.1 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) eIF2_C PF09173.11 gi|330508868|ref|YP_004385296.1| - 1.4e-32 111.8 0.2 3.9e-32 110.4 0.2 1.8 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|330508868|ref|YP_004385296.1| - 3.1e-30 105.2 0.8 2.6e-29 102.1 0.8 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|330508868|ref|YP_004385296.1| - 5.4e-08 33.1 0.7 1.7e-07 31.5 0.7 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|330508868|ref|YP_004385296.1| - 4.8e-06 26.6 0.9 0.00046 20.1 0.1 2.5 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|330508868|ref|YP_004385296.1| - 0.00041 20.4 0.0 0.00094 19.3 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|330508868|ref|YP_004385296.1| - 0.0018 18.3 0.1 0.0039 17.2 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain cobW PF02492.19 gi|330508868|ref|YP_004385296.1| - 0.0031 17.1 0.1 0.077 12.6 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.20 gi|330508868|ref|YP_004385296.1| - 0.053 12.7 0.1 0.098 11.8 0.1 1.3 1 0 0 1 1 1 0 G-protein alpha subunit Nop10p PF04135.12 gi|330508868|ref|YP_004385296.1| - 0.081 13.0 0.2 0.16 12.0 0.2 1.5 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family PduV-EutP PF10662.9 gi|330508868|ref|YP_004385296.1| - 0.11 12.3 0.3 2.4 7.9 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation zinc_ribbon_2 PF13240.6 gi|330508868|ref|YP_004385296.1| - 4.3 7.2 7.1 3.7 7.4 0.6 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Inhibitor_I42 PF09394.10 gi|330508869|ref|YP_004385297.1| - 1.2e-22 80.1 0.0 2e-22 79.4 0.0 1.4 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 NosD PF05048.13 gi|330508869|ref|YP_004385297.1| - 4.7e-18 65.3 0.7 6.7e-18 64.8 0.6 1.3 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) AIRS PF00586.24 gi|330508870|ref|YP_004385298.1| - 2.4e-21 76.2 0.3 4.3e-21 75.4 0.3 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|330508870|ref|YP_004385298.1| - 4.7e-09 36.6 0.4 8.6e-09 35.7 0.4 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|330508871|ref|YP_004385299.1| - 1.2e-22 79.6 0.1 2.4e-22 78.6 0.1 1.5 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|330508871|ref|YP_004385299.1| - 0.0015 18.5 0.2 0.0026 17.8 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|330508871|ref|YP_004385299.1| - 0.014 14.9 0.3 0.48 10.0 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Pestivirus_E2 PF16329.5 gi|330508871|ref|YP_004385299.1| - 0.019 13.9 0.1 0.021 13.7 0.1 1.0 1 0 0 1 1 1 0 Pestivirus envelope glycoprotein E2 RecR PF02132.15 gi|330508871|ref|YP_004385299.1| - 0.057 13.0 3.9 3.2 7.4 0.1 2.6 2 1 1 3 3 3 0 RecR protein zf-ribbon_3 PF13248.6 gi|330508871|ref|YP_004385299.1| - 1.6 8.3 5.2 3.2 7.3 2.3 2.6 2 1 0 2 2 2 0 zinc-ribbon domain HTH_OrfB_IS605 PF12323.8 gi|330508872|ref|YP_004385300.1| - 1.2e-19 69.5 2.3 2.1e-19 68.8 2.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_IS605 PF01385.19 gi|330508872|ref|YP_004385300.1| - 1e-07 32.2 0.0 2.1e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Probable transposase MIP PF00230.20 gi|330508873|ref|YP_004385301.1| - 2.8e-48 164.6 18.2 3.2e-48 164.4 18.2 1.0 1 0 0 1 1 1 1 Major intrinsic protein CPP1-like PF11833.8 gi|330508873|ref|YP_004385301.1| - 2.7 7.6 9.2 5.4 6.6 2.3 2.6 1 1 1 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF2180 PF09947.9 gi|330508874|ref|YP_004385302.1| - 1e-36 124.7 4.3 1.1e-36 124.6 4.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.6 gi|330508874|ref|YP_004385302.1| - 0.011 16.6 3.5 0.35 11.7 0.7 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-UBP_var PF17807.1 gi|330508874|ref|YP_004385302.1| - 0.029 14.1 0.8 0.051 13.3 0.8 1.3 1 0 0 1 1 1 0 Variant UBP zinc finger FYVE PF01363.21 gi|330508874|ref|YP_004385302.1| - 0.045 13.9 0.7 0.06 13.5 0.7 1.3 1 0 0 1 1 1 0 FYVE zinc finger Transp_Tc5_C PF04236.15 gi|330508874|ref|YP_004385302.1| - 0.086 13.2 1.6 0.15 12.4 1.6 1.5 1 0 0 1 1 1 0 Tc5 transposase C-terminal domain Prok-RING_1 PF14446.6 gi|330508874|ref|YP_004385302.1| - 0.45 10.5 4.7 5.5 7.0 2.2 2.3 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 DUF2193 PF09959.9 gi|330508875|ref|YP_004385303.1| - 3.1e-276 916.6 1.8 3.5e-276 916.4 1.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) Thioredoxin_3 PF13192.6 gi|330508876|ref|YP_004385304.1| - 2.5e-25 88.3 0.7 2.8e-25 88.2 0.7 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.20 gi|330508876|ref|YP_004385304.1| - 0.002 18.1 0.0 0.002 18.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.6 gi|330508876|ref|YP_004385304.1| - 0.002 18.3 0.2 0.0045 17.2 0.3 1.5 1 1 1 2 2 2 1 Thioredoxin Glutaredoxin PF00462.24 gi|330508876|ref|YP_004385304.1| - 0.008 16.4 0.1 0.015 15.5 0.1 1.5 1 1 0 1 1 1 1 Glutaredoxin ArsD PF06953.11 gi|330508876|ref|YP_004385304.1| - 0.017 15.4 0.0 0.033 14.5 0.0 1.4 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Methyltransf_2 PF00891.18 gi|330508876|ref|YP_004385304.1| - 0.11 11.8 0.1 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 O-methyltransferase domain DGC PF08859.11 gi|330508877|ref|YP_004385305.1| - 8.6e-32 109.4 6.2 1e-31 109.1 6.2 1.1 1 0 0 1 1 1 1 DGC domain Rhodanese PF00581.20 gi|330508878|ref|YP_004385306.1| - 3.8e-17 62.8 0.0 2.7e-09 37.5 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|330508879|ref|YP_004385307.1| - 4.2e-19 69.0 0.0 1.9e-11 44.5 0.0 2.6 2 0 0 2 2 2 2 Rhodanese-like domain NMD3 PF04981.13 gi|330508879|ref|YP_004385307.1| - 0.1 12.0 0.0 0.3 10.5 0.0 1.7 2 0 0 2 2 2 0 NMD3 family Polysacc_syn_2C PF08485.10 gi|330508879|ref|YP_004385307.1| - 0.14 11.9 0.0 0.35 10.6 0.0 1.6 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein C-terminal Metallophos_2 PF12850.7 gi|330508881|ref|YP_004385309.1| - 6.2e-25 88.3 0.0 8e-25 87.9 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|330508881|ref|YP_004385309.1| - 0.00079 20.0 0.2 0.026 15.0 0.0 2.1 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase SIS PF01380.22 gi|330508882|ref|YP_004385310.1| - 3.3e-06 27.0 0.0 0.029 14.2 0.0 2.9 2 1 0 2 2 2 2 SIS domain OrfB_IS605 PF01385.19 gi|330508883|ref|YP_004385311.1| - 3.9e-06 27.1 0.4 3.9e-06 27.1 0.4 1.9 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|330508883|ref|YP_004385311.1| - 7.2e-06 25.8 0.0 3e-05 23.8 0.0 2.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF1297 PF06973.12 gi|330508884|ref|YP_004385312.1| - 2.1e-56 190.5 0.1 2.7e-56 190.1 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|330508884|ref|YP_004385312.1| - 2.3e-41 140.6 0.0 3.9e-41 139.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|330508884|ref|YP_004385312.1| - 6.7e-06 26.2 0.0 1.8e-05 24.9 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|330508884|ref|YP_004385312.1| - 0.00069 19.2 0.0 0.0018 17.8 0.0 1.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.11 gi|330508884|ref|YP_004385312.1| - 0.0066 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp PF02222.22 gi|330508884|ref|YP_004385312.1| - 0.049 13.2 0.5 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 ATP-grasp domain TTL PF03133.15 gi|330508884|ref|YP_004385312.1| - 0.15 11.2 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Tubulin-tyrosine ligase family EamA PF00892.20 gi|330508885|ref|YP_004385313.1| - 3.9e-14 53.0 13.3 3.9e-14 53.0 13.3 2.5 3 0 0 3 3 3 2 EamA-like transporter family Glucos_trans_II PF14264.6 gi|330508885|ref|YP_004385313.1| - 3.7 6.8 28.9 0.074 12.4 11.8 2.2 2 0 0 2 2 2 0 Glucosyl transferase GtrII DUF2157 PF09925.9 gi|330508886|ref|YP_004385314.1| - 0.0014 18.5 0.1 0.0018 18.1 0.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2157) Phage_holin_3_3 PF16083.5 gi|330508886|ref|YP_004385314.1| - 0.011 15.8 0.9 0.027 14.6 0.0 1.9 2 0 0 2 2 2 0 LydA holin phage, holin superfamily III TssO PF17561.2 gi|330508886|ref|YP_004385314.1| - 0.77 9.9 5.0 0.33 11.0 1.4 2.1 1 1 1 2 2 2 0 Type VI secretion system, TssO SDH_sah PF01972.16 gi|330508887|ref|YP_004385315.1| - 1.5e-13 50.4 0.0 1.2e-10 40.8 0.0 2.2 2 0 0 2 2 2 2 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|330508887|ref|YP_004385315.1| - 0.00012 22.0 0.0 0.00065 19.6 0.0 2.1 2 0 0 2 2 2 1 Clp protease HTH_AraC PF00165.23 gi|330508887|ref|YP_004385315.1| - 0.0008 19.5 0.0 0.0016 18.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix proteins, AraC family DUF4482 PF14818.6 gi|330508887|ref|YP_004385315.1| - 0.051 14.4 0.4 0.11 13.4 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4482) RHH_5 PF07878.11 gi|330508888|ref|YP_004385316.1| - 7.6e-17 60.9 0.1 9e-17 60.7 0.1 1.1 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 DDE_Tnp_1 PF01609.21 gi|330508889|ref|YP_004385317.1| - 1.1e-20 74.2 0.2 3.2e-20 72.7 0.2 1.7 1 1 0 1 1 1 1 Transposase DDE domain SWIM PF04434.17 gi|330508889|ref|YP_004385317.1| - 1.4e-05 24.7 0.5 2.8e-05 23.7 0.5 1.4 1 0 0 1 1 1 1 SWIM zinc finger Lactamase_B_2 PF12706.7 gi|330508890|ref|YP_004385318.1| - 3e-23 82.4 0.1 1.2e-11 44.5 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|330508890|ref|YP_004385318.1| - 1.3e-12 48.1 0.8 4e-11 43.3 0.1 2.8 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|330508890|ref|YP_004385318.1| - 2.1e-07 30.5 0.0 4.1e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 tRNase Z endonuclease Response_reg PF00072.24 gi|330508892|ref|YP_004385320.1| - 7.3e-41 138.8 0.6 4.3e-29 100.9 0.2 2.6 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.26 gi|330508892|ref|YP_004385320.1| - 6e-30 104.0 0.2 1.2e-29 103.1 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|330508892|ref|YP_004385320.1| - 1e-17 63.9 0.0 1e-17 63.9 0.0 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|330508892|ref|YP_004385320.1| - 0.024 14.5 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2098 PF09871.9 gi|330508892|ref|YP_004385320.1| - 0.095 13.0 0.5 0.21 11.9 0.5 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2098) FmiP_Thoc5 PF09766.9 gi|330508892|ref|YP_004385320.1| - 0.23 10.7 1.7 0.34 10.2 1.7 1.2 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 Hist_deacetyl PF00850.19 gi|330508893|ref|YP_004385321.1| - 1e-33 117.1 0.2 3e-26 92.6 0.2 3.0 1 1 2 3 3 3 3 Histone deacetylase domain B12-binding PF02310.19 gi|330508893|ref|YP_004385321.1| - 0.072 13.1 0.0 0.18 11.8 0.0 1.7 1 1 0 1 1 1 0 B12 binding domain Transposase_20 PF02371.16 gi|330508896|ref|YP_004385324.1| - 2.9e-25 88.4 0.1 5.4e-25 87.5 0.1 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330508896|ref|YP_004385324.1| - 3.7e-21 75.6 0.0 6.6e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 Transposase Init_tRNA_PT PF04179.12 gi|330508896|ref|YP_004385324.1| - 0.036 14.4 1.0 0.081 13.2 0.1 2.0 2 0 0 2 2 2 0 Rit1 DUSP-like domain OrfB_IS605 PF01385.19 gi|330508897|ref|YP_004385325.1| - 1.1e-21 77.3 0.0 2.3e-21 76.3 0.0 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|330508897|ref|YP_004385325.1| - 3.2e-09 36.1 0.8 8.5e-09 34.8 0.8 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DDE_3 PF13358.6 gi|330508898|ref|YP_004385326.1| - 1.4e-31 109.2 0.0 1.9e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease rve_2 PF13333.6 gi|330508898|ref|YP_004385326.1| - 0.063 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain rve_3 PF13683.6 gi|330508898|ref|YP_004385326.1| - 0.11 12.3 0.3 2.3 8.1 0.0 2.5 3 0 0 3 3 3 0 Integrase core domain OrfB_Zn_ribbon PF07282.11 gi|330508899|ref|YP_004385327.1| - 4.7e-22 77.7 0.1 5.1e-22 77.6 0.1 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|330508899|ref|YP_004385327.1| - 0.0013 18.8 0.2 0.0016 18.4 0.2 1.1 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|330508899|ref|YP_004385327.1| - 0.0019 17.7 0.6 0.044 13.3 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding FYVE PF01363.21 gi|330508899|ref|YP_004385327.1| - 0.011 15.9 0.3 0.014 15.5 0.3 1.1 1 0 0 1 1 1 0 FYVE zinc finger RecR PF02132.15 gi|330508899|ref|YP_004385327.1| - 0.012 15.2 2.1 0.87 9.2 3.2 2.1 1 1 1 2 2 2 0 RecR protein C1_1 PF00130.22 gi|330508899|ref|YP_004385327.1| - 0.019 14.8 0.2 0.027 14.3 0.2 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.6 gi|330508899|ref|YP_004385327.1| - 0.034 13.6 0.8 0.48 9.9 0.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain YhfH PF14149.6 gi|330508899|ref|YP_004385327.1| - 0.069 13.1 0.3 3.4 7.7 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein TFX_C PF14601.6 gi|330508900|ref|YP_004385328.1| - 2.7e-26 91.3 0.0 3.9e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|330508900|ref|YP_004385328.1| - 3.9e-07 29.5 0.6 1.3e-06 27.8 0.3 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|330508900|ref|YP_004385328.1| - 3.2e-05 23.4 0.1 8.5e-05 22.0 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|330508900|ref|YP_004385328.1| - 0.00012 21.7 1.6 0.0014 18.3 0.2 2.7 1 1 1 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.6 gi|330508900|ref|YP_004385328.1| - 0.00037 20.4 0.5 0.0008 19.3 0.1 1.8 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|330508900|ref|YP_004385328.1| - 0.00038 20.7 0.4 0.0009 19.5 0.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|330508900|ref|YP_004385328.1| - 0.00057 19.8 0.1 0.0017 18.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|330508900|ref|YP_004385328.1| - 0.00095 19.2 0.2 0.0026 17.8 0.1 1.9 2 0 0 2 2 1 1 Helix-turn-helix MarR_2 PF12802.7 gi|330508900|ref|YP_004385328.1| - 0.0022 17.9 0.1 0.081 12.8 0.1 2.3 2 0 0 2 2 2 1 MarR family KORA PF16509.5 gi|330508900|ref|YP_004385328.1| - 0.0026 18.0 0.1 0.0045 17.2 0.1 1.4 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor Sigma70_r4_2 PF08281.12 gi|330508900|ref|YP_004385328.1| - 0.0028 17.3 0.1 0.01 15.5 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|330508900|ref|YP_004385328.1| - 0.0065 16.2 0.0 0.034 13.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|330508900|ref|YP_004385328.1| - 0.017 15.1 0.1 0.038 14.0 0.1 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_7 PF02796.15 gi|330508900|ref|YP_004385328.1| - 0.038 14.1 0.0 0.11 12.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|330508900|ref|YP_004385328.1| - 0.058 13.0 0.1 0.18 11.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Cation_ATPase_N PF00690.26 gi|330508900|ref|YP_004385328.1| - 0.08 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Cation transporter/ATPase, N-terminus Thi4 PF01946.17 gi|330508901|ref|YP_004385329.1| - 9.8e-76 254.1 4.4 1.1e-75 253.8 4.4 1.0 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|330508901|ref|YP_004385329.1| - 2.7e-05 24.3 0.1 2.7e-05 24.3 0.1 2.4 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|330508901|ref|YP_004385329.1| - 6e-05 22.4 0.3 8.8e-05 21.9 0.3 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|330508901|ref|YP_004385329.1| - 6.1e-05 22.6 1.3 9e-05 22.0 1.3 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|330508901|ref|YP_004385329.1| - 0.0059 15.9 0.2 0.01 15.1 0.2 1.5 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|330508901|ref|YP_004385329.1| - 0.012 14.4 3.4 0.043 12.5 1.0 2.0 2 0 0 2 2 2 0 HI0933-like protein K_oxygenase PF13434.6 gi|330508901|ref|YP_004385329.1| - 0.033 13.3 0.0 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|330508901|ref|YP_004385329.1| - 0.039 13.0 5.1 0.062 12.4 0.6 2.2 1 1 1 2 2 2 0 FAD binding domain NAD_binding_9 PF13454.6 gi|330508901|ref|YP_004385329.1| - 0.11 12.4 0.2 0.28 11.1 0.2 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|330508901|ref|YP_004385329.1| - 0.14 11.1 1.7 0.45 9.5 0.2 2.1 2 1 0 2 2 2 0 Lycopene cyclase protein Epimerase PF01370.21 gi|330508902|ref|YP_004385330.1| - 2.3e-46 158.2 0.0 2.7e-46 158.0 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|330508902|ref|YP_004385330.1| - 5.7e-45 154.2 0.0 8.3e-45 153.6 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|330508902|ref|YP_004385330.1| - 1.6e-18 66.7 0.0 2e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|330508902|ref|YP_004385330.1| - 1.7e-18 66.8 0.0 1.3e-17 63.9 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|330508902|ref|YP_004385330.1| - 3.6e-13 49.2 0.0 4.8e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|330508902|ref|YP_004385330.1| - 3.9e-11 42.6 0.4 1.7e-05 24.1 0.0 2.7 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|330508902|ref|YP_004385330.1| - 1.2e-08 35.0 0.0 2e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|330508902|ref|YP_004385330.1| - 0.045 13.3 0.0 0.26 10.8 0.0 2.1 2 1 0 2 2 2 0 NmrA-like family KR PF08659.10 gi|330508902|ref|YP_004385330.1| - 0.064 13.2 0.3 13 5.7 0.1 2.3 2 0 0 2 2 2 0 KR domain Rhodanese PF00581.20 gi|330508903|ref|YP_004385331.1| - 5.6e-21 75.1 0.0 6.3e-15 55.6 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain Dicty_CAD PF05720.12 gi|330508903|ref|YP_004385331.1| - 0.093 12.7 0.0 1.5 8.9 0.0 2.8 4 0 0 4 4 4 0 Cell-cell adhesion domain DeoC PF01791.9 gi|330508904|ref|YP_004385332.1| - 1e-60 205.3 0.2 1.2e-60 205.1 0.2 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|330508904|ref|YP_004385332.1| - 0.0066 16.1 0.0 0.019 14.6 0.0 1.7 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.17 gi|330508904|ref|YP_004385332.1| - 0.011 15.1 0.0 0.92 8.8 0.0 2.5 2 0 0 2 2 2 0 Thiamine monophosphate synthase NMO PF03060.15 gi|330508904|ref|YP_004385332.1| - 0.077 12.4 7.2 1.2 8.4 0.2 2.5 2 1 0 2 2 2 0 Nitronate monooxygenase CARDB PF07705.11 gi|330508905|ref|YP_004385333.1| - 0.0012 19.0 0.0 0.58 10.4 0.0 3.1 2 2 0 2 2 2 2 CARDB NPCBM_assoc PF10633.9 gi|330508905|ref|YP_004385333.1| - 0.0049 17.1 0.0 1.7 9.0 0.0 2.9 2 1 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|330508905|ref|YP_004385333.1| - 0.02 15.2 0.1 1.5 9.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF11 FeoB_associated PF12669.7 gi|330508905|ref|YP_004385333.1| - 0.28 11.6 1.0 0.49 10.8 0.1 1.7 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein AA_permease_2 PF13520.6 gi|330508906|ref|YP_004385334.1| - 3.3e-46 158.0 47.6 4.1e-46 157.7 47.6 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|330508906|ref|YP_004385334.1| - 5.5e-29 101.1 52.4 1.6e-28 99.5 52.3 1.6 1 1 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|330508906|ref|YP_004385334.1| - 1.4e-11 43.8 18.0 1.4e-11 43.8 18.0 2.3 1 1 0 2 2 2 1 Spore germination protein TMEM237 PF15383.6 gi|330508906|ref|YP_004385334.1| - 0.26 10.3 1.8 0.67 9.0 1.8 1.7 1 0 0 1 1 1 0 Transmembrane protein 237 Virul_fac_BrkB PF03631.15 gi|330508907|ref|YP_004385335.1| - 9.6e-48 163.0 19.8 1.4e-46 159.2 19.8 2.0 1 1 0 1 1 1 1 Virulence factor BrkB Nucleos_tra2_N PF01773.20 gi|330508907|ref|YP_004385335.1| - 0.013 16.1 0.4 0.013 16.1 0.4 2.9 4 0 0 4 4 4 0 Na+ dependent nucleoside transporter N-terminus PetG PF02529.15 gi|330508907|ref|YP_004385335.1| - 4.6 7.2 7.0 13 5.7 7.0 1.8 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 AI-2E_transport PF01594.16 gi|330508908|ref|YP_004385336.1| - 8e-49 166.5 35.4 1.3e-48 165.8 35.4 1.2 1 0 0 1 1 1 1 AI-2E family transporter Sperm_Ag_HE2 PF05324.13 gi|330508908|ref|YP_004385336.1| - 1.5 9.3 3.0 1.1 9.8 0.4 2.1 2 0 0 2 2 2 0 Sperm antigen HE2 AI-2E_transport PF01594.16 gi|330508909|ref|YP_004385337.1| - 1.5e-31 109.8 27.1 1.7e-31 109.6 27.1 1.0 1 0 0 1 1 1 1 AI-2E family transporter NurA PF09376.10 gi|330508911|ref|YP_004385339.1| - 8.7e-10 38.7 0.2 4.2e-09 36.5 0.2 1.9 1 1 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|330508912|ref|YP_004385340.1| - 1.3e-23 84.3 2.5 7e-23 81.9 2.5 2.0 1 1 0 1 1 1 1 Helicase HerA, central domain RHH_1 PF01402.21 gi|330508912|ref|YP_004385340.1| - 0.026 14.4 0.0 0.099 12.6 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF853 PF05872.12 gi|330508912|ref|YP_004385340.1| - 0.028 13.0 0.1 0.058 12.0 0.0 1.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) DUF4325 PF14213.6 gi|330508912|ref|YP_004385340.1| - 0.098 12.4 0.9 0.37 10.5 0.1 2.3 2 0 0 2 2 2 0 STAS-like domain of unknown function (DUF4325) TrwB_AAD_bind PF10412.9 gi|330508912|ref|YP_004385340.1| - 0.92 8.3 3.2 2.5 6.9 0.1 2.7 3 1 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain Metallophos PF00149.28 gi|330508913|ref|YP_004385341.1| - 8.7e-15 55.8 0.5 1.3e-14 55.2 0.5 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|330508913|ref|YP_004385341.1| - 6e-10 39.5 0.1 9.6e-10 38.9 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|330508913|ref|YP_004385341.1| - 0.012 14.9 0.1 0.27 10.5 0.1 2.3 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily SMC_N PF02463.19 gi|330508914|ref|YP_004385342.1| - 1.8e-22 79.9 0.3 2.9e-22 79.2 0.3 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|330508914|ref|YP_004385342.1| - 2e-12 47.5 6.2 2e-12 47.5 6.2 3.6 2 2 1 3 3 3 1 AAA ATPase domain AAA_23 PF13476.6 gi|330508914|ref|YP_004385342.1| - 6.2e-09 36.6 87.2 8.1e+02 0.4 87.2 6.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|330508914|ref|YP_004385342.1| - 1.9e-08 33.9 0.0 3.7e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|330508914|ref|YP_004385342.1| - 1.2e-05 25.4 0.0 3.2e-05 24.1 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|330508914|ref|YP_004385342.1| - 8.1e-05 22.3 0.0 8.1e-05 22.3 0.0 4.1 4 1 0 4 4 4 1 AAA domain AAA_21 PF13304.6 gi|330508914|ref|YP_004385342.1| - 0.00016 21.6 0.3 0.00016 21.6 0.3 3.1 3 1 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|330508914|ref|YP_004385342.1| - 0.0002 21.9 4.3 0.00038 21.0 0.1 3.5 2 1 0 2 2 2 1 ABC transporter MukB PF04310.12 gi|330508914|ref|YP_004385342.1| - 0.013 15.3 0.4 0.043 13.6 0.0 2.1 2 0 0 2 2 2 0 MukB N-terminal OMS28_porin PF03532.13 gi|330508914|ref|YP_004385342.1| - 2.3 7.4 7.5 0.6 9.3 0.6 2.9 2 1 1 3 3 3 0 OMS28 porin DUF4277 PF14104.6 gi|330508915|ref|YP_004385343.1| - 2.9e-41 140.2 0.0 6e-41 139.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|330508915|ref|YP_004385343.1| - 8.1e-12 45.2 0.2 5.7e-11 42.5 0.2 2.0 1 1 0 1 1 1 1 Transposase DDE domain Laminin_G_3 PF13385.6 gi|330508916|ref|YP_004385344.1| - 2.9e-20 72.9 0.9 5.9e-20 71.9 0.9 1.5 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily Lycopene_cycl PF05834.12 gi|330508917|ref|YP_004385345.1| - 9.5e-12 44.6 0.3 1.4e-06 27.6 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|330508917|ref|YP_004385345.1| - 4.5e-09 36.0 2.5 0.00023 20.5 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain Pyr_redox_2 PF07992.14 gi|330508917|ref|YP_004385345.1| - 4.5e-08 32.7 0.4 0.00013 21.3 0.3 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|330508917|ref|YP_004385345.1| - 5.3e-07 28.7 1.1 2e-06 26.8 0.6 1.9 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|330508917|ref|YP_004385345.1| - 5.9e-07 29.4 1.8 0.0046 16.6 0.5 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|330508917|ref|YP_004385345.1| - 6.3e-06 25.8 2.1 6.3e-06 25.8 2.1 1.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|330508917|ref|YP_004385345.1| - 6.7e-05 21.9 0.5 0.26 10.1 0.3 2.7 3 0 0 3 3 3 2 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|330508917|ref|YP_004385345.1| - 0.00012 22.2 0.4 0.00046 20.4 0.4 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|330508917|ref|YP_004385345.1| - 0.00021 20.5 0.3 0.00027 20.2 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|330508917|ref|YP_004385345.1| - 0.00064 19.0 0.2 0.0013 18.0 0.2 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|330508917|ref|YP_004385345.1| - 0.0013 17.9 2.7 0.0033 16.6 2.7 1.7 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|330508917|ref|YP_004385345.1| - 0.008 15.5 1.8 0.011 15.1 0.1 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|330508917|ref|YP_004385345.1| - 0.0092 15.3 0.2 0.035 13.4 0.4 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|330508917|ref|YP_004385345.1| - 0.076 12.3 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|330508917|ref|YP_004385345.1| - 0.11 13.1 0.0 0.71 10.5 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Ku PF02735.16 gi|330508919|ref|YP_004385347.1| - 8.1e-29 100.8 0.2 1.2e-28 100.3 0.2 1.2 1 0 0 1 1 1 1 Ku70/Ku80 beta-barrel domain DNA_ligase_A_M PF01068.21 gi|330508920|ref|YP_004385348.1| - 4.8e-30 104.7 0.0 6.8e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.15 gi|330508920|ref|YP_004385348.1| - 1e-21 77.4 0.0 1.6e-21 76.7 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|330508920|ref|YP_004385348.1| - 9.1e-05 22.8 0.0 0.00017 22.0 0.0 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|330508920|ref|YP_004385348.1| - 0.0024 17.9 0.0 0.027 14.5 0.0 2.6 2 1 0 2 2 2 1 DNA ligase OB-like domain mRNA_cap_enzyme PF01331.19 gi|330508920|ref|YP_004385348.1| - 0.0056 16.5 0.0 0.15 11.9 0.0 2.2 2 0 0 2 2 2 1 mRNA capping enzyme, catalytic domain Transposase_20 PF02371.16 gi|330508921|ref|YP_004385349.1| - 5.9e-25 87.4 0.0 1.3e-24 86.3 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330508921|ref|YP_004385349.1| - 9.3e-23 80.8 0.2 3.7e-22 78.9 0.0 2.0 2 0 0 2 2 2 1 Transposase YfkB PF08756.10 gi|330508921|ref|YP_004385349.1| - 0.0059 16.4 0.1 0.015 15.1 0.1 1.7 1 0 0 1 1 1 1 YfkB-like domain UPF0261 PF06792.11 gi|330508921|ref|YP_004385349.1| - 0.12 11.3 0.1 0.79 8.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0261) Transposase_20 PF02371.16 gi|330508922|ref|YP_004385350.1| - 5.9e-25 87.4 0.0 1.3e-24 86.3 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330508922|ref|YP_004385350.1| - 9.3e-23 80.8 0.2 3.7e-22 78.9 0.0 2.0 2 0 0 2 2 2 1 Transposase YfkB PF08756.10 gi|330508922|ref|YP_004385350.1| - 0.0059 16.4 0.1 0.015 15.1 0.1 1.7 1 0 0 1 1 1 1 YfkB-like domain UPF0261 PF06792.11 gi|330508922|ref|YP_004385350.1| - 0.12 11.3 0.1 0.79 8.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0261) Cas6b_C PF17262.2 gi|330508925|ref|YP_004385353.1| - 1.2e-40 138.1 0.0 1.8e-40 137.6 0.0 1.3 1 0 0 1 1 1 1 Cas6b C-terminal domain Cas6b_N PF17955.1 gi|330508925|ref|YP_004385353.1| - 3.2e-35 120.3 0.0 7.1e-35 119.2 0.0 1.6 2 0 0 2 2 2 1 Cas6b N-terminal domain ResIII PF04851.15 gi|330508926|ref|YP_004385354.1| - 1.1e-07 32.1 0.3 5.2e-07 29.8 0.1 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|330508926|ref|YP_004385354.1| - 2.3e-06 27.5 0.0 1.1e-05 25.3 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase HD_6 PF18019.1 gi|330508926|ref|YP_004385354.1| - 1.5e-05 25.3 0.0 2.9e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 HD domain Helicase_C PF00271.31 gi|330508926|ref|YP_004385354.1| - 0.00022 21.5 0.0 0.0009 19.6 0.0 2.1 1 0 0 1 1 1 1 Helicase conserved C-terminal domain PhoH PF02562.16 gi|330508926|ref|YP_004385354.1| - 0.0034 16.8 0.0 0.46 9.9 0.0 2.7 3 0 0 3 3 3 1 PhoH-like protein DUF5600 PF18150.1 gi|330508926|ref|YP_004385354.1| - 0.0057 17.2 0.9 0.025 15.2 0.9 2.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5600) Viral_cys_rich PF08008.12 gi|330508926|ref|YP_004385354.1| - 0.046 13.8 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Viral cysteine rich PqqD PF05402.12 gi|330508926|ref|YP_004385354.1| - 0.061 13.6 1.9 0.37 11.1 0.0 3.0 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) SNF2_N PF00176.23 gi|330508926|ref|YP_004385354.1| - 0.18 10.5 0.1 0.66 8.6 0.1 1.9 1 1 0 1 1 1 0 SNF2 family N-terminal domain DUSP PF06337.12 gi|330508926|ref|YP_004385354.1| - 0.2 12.3 0.7 11 6.8 0.1 3.2 2 0 0 2 2 2 0 DUSP domain AAA_14 PF13173.6 gi|330508926|ref|YP_004385354.1| - 0.25 11.4 4.2 0.64 10.1 0.1 3.5 2 1 2 4 4 4 0 AAA domain Cas_Cas5d PF09704.10 gi|330508927|ref|YP_004385355.1| - 5.5e-07 29.7 0.0 6.9e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_Cas7 PF05107.12 gi|330508928|ref|YP_004385356.1| - 8.5e-63 212.3 0.0 1e-62 212.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Cas7 Cas_TM1802 PF09484.10 gi|330508929|ref|YP_004385357.1| - 1.9e-172 575.2 25.3 2.1e-172 575.1 25.3 1.0 1 0 0 1 1 1 1 CRISPR-associated protein TM1802 (cas_TM1802) Retrotrans_gag PF03732.17 gi|330508929|ref|YP_004385357.1| - 0.053 13.8 2.2 0.063 13.6 0.3 2.1 2 0 0 2 2 2 0 Retrotransposon gag protein Spore_III_AB PF09548.10 gi|330508929|ref|YP_004385357.1| - 1.2 9.2 5.4 0.62 10.2 0.1 2.7 3 0 0 3 3 3 0 Stage III sporulation protein AB (spore_III_AB) DUF1870 PF08965.10 gi|330508929|ref|YP_004385357.1| - 1.5 8.8 4.1 17 5.5 0.2 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF1870) Cas_Cas4 PF01930.17 gi|330508930|ref|YP_004385358.1| - 3.5e-17 63.0 3.5 4.3e-17 62.7 3.5 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|330508930|ref|YP_004385358.1| - 3.2e-07 30.5 6.9 6.1e-07 29.6 4.3 1.9 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily TPR_2 PF07719.17 gi|330508930|ref|YP_004385358.1| - 0.096 12.8 0.1 0.65 10.3 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat CRISPR_Cas2 PF09827.9 gi|330508931|ref|YP_004385359.1| - 3.5e-22 78.4 0.3 4e-22 78.2 0.3 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|330508932|ref|YP_004385360.1| - 2.5e-78 263.1 0.0 3e-78 262.9 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF4194 PF13835.6 gi|330508932|ref|YP_004385360.1| - 0.017 14.9 0.4 0.041 13.6 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4194) DUF104 PF01954.16 gi|330508933|ref|YP_004385361.1| - 3.3e-14 53.1 0.3 4e-14 52.8 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 MazE_antitoxin PF04014.18 gi|330508933|ref|YP_004385361.1| - 0.05 13.5 1.3 0.085 12.8 0.5 1.8 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin PIN PF01850.21 gi|330508934|ref|YP_004385362.1| - 5.4e-07 30.1 0.7 6.4e-07 29.9 0.7 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|330508934|ref|YP_004385362.1| - 0.016 16.0 0.1 0.022 15.5 0.1 1.3 1 1 0 1 1 1 0 PIN domain PIN_12 PF16289.5 gi|330508934|ref|YP_004385362.1| - 0.022 15.2 0.2 0.03 14.8 0.2 1.3 1 1 0 1 1 1 0 PIN domain DUF1100 PF06500.11 gi|330508935|ref|YP_004385363.1| - 9.9e-12 44.4 0.0 1.4e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Peptidase_S9 PF00326.21 gi|330508935|ref|YP_004385363.1| - 2.9e-09 36.7 0.0 5.6e-07 29.2 0.0 2.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|330508935|ref|YP_004385363.1| - 3.8e-07 30.9 0.0 7.8e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|330508935|ref|YP_004385363.1| - 7.4e-06 25.4 0.0 1.6e-05 24.3 0.0 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 BAAT_C PF08840.11 gi|330508935|ref|YP_004385363.1| - 8.3e-06 25.9 0.0 1.5e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal AXE1 PF05448.12 gi|330508935|ref|YP_004385363.1| - 4.3e-05 22.4 0.0 8.6e-05 21.4 0.0 1.5 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S15 PF02129.18 gi|330508935|ref|YP_004385363.1| - 8.5e-05 22.3 0.0 0.0036 16.9 0.0 2.2 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|330508935|ref|YP_004385363.1| - 0.0021 17.7 0.1 0.0069 16.1 0.1 1.8 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 gi|330508935|ref|YP_004385363.1| - 0.0091 15.9 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.18 gi|330508935|ref|YP_004385363.1| - 0.028 14.0 0.0 0.068 12.7 0.0 1.5 1 1 0 1 1 1 0 Dienelactone hydrolase family UPF0227 PF05728.12 gi|330508935|ref|YP_004385363.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Dodecin PF07311.12 gi|330508936|ref|YP_004385364.1| - 2.4e-20 72.5 0.0 2.9e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 Dodecin Molybdopterin PF00384.22 gi|330508937|ref|YP_004385365.1| - 3.8e-89 299.6 0.0 4.6e-89 299.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|330508937|ref|YP_004385365.1| - 1.2e-29 102.5 0.0 2.5e-29 101.6 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|330508937|ref|YP_004385365.1| - 3.9e-17 62.1 0.0 1.4e-16 60.3 0.0 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Molybdop_Fe4S4 PF04879.16 gi|330508937|ref|YP_004385365.1| - 6.1e-17 61.3 0.3 4.1e-16 58.7 0.3 2.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain NADH-G_4Fe-4S_3 PF10588.9 gi|330508937|ref|YP_004385365.1| - 6.9e-07 28.7 9.6 0.0013 18.3 3.5 2.9 1 1 1 2 2 2 2 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_7 PF12838.7 gi|330508937|ref|YP_004385365.1| - 1.4e-06 28.8 15.6 0.00039 20.9 9.6 4.5 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330508937|ref|YP_004385365.1| - 2.3e-06 27.2 2.4 2.3e-06 27.2 2.4 4.3 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330508937|ref|YP_004385365.1| - 0.00013 22.1 3.4 0.00013 22.1 3.4 2.9 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330508937|ref|YP_004385365.1| - 0.00018 21.6 10.4 0.00018 21.6 10.4 4.1 4 1 1 5 5 5 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330508937|ref|YP_004385365.1| - 0.033 15.1 6.1 0.033 15.1 6.1 5.0 6 0 0 6 6 3 0 4Fe-4S binding domain Fer4_19 PF06902.11 gi|330508937|ref|YP_004385365.1| - 0.21 11.7 3.2 1.1 9.4 3.2 2.3 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_18 PF13746.6 gi|330508937|ref|YP_004385365.1| - 0.34 11.1 9.0 0.37 11.0 0.1 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330508937|ref|YP_004385365.1| - 3.8 8.3 8.0 16 6.3 1.3 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain TIR_2 PF13676.6 gi|330508938|ref|YP_004385366.1| - 1e-08 35.8 0.0 1.7e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 TIR domain zf-C4pol PF14260.6 gi|330508938|ref|YP_004385366.1| - 0.002 18.6 0.2 0.0038 17.7 0.2 1.4 1 0 0 1 1 1 1 C4-type zinc-finger of DNA polymerase delta DZR PF12773.7 gi|330508938|ref|YP_004385366.1| - 0.045 13.8 0.1 0.09 12.8 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|330508938|ref|YP_004385366.1| - 0.046 13.1 0.6 2.8 7.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|330508938|ref|YP_004385366.1| - 0.27 11.0 1.2 2.8 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain FlpD PF02662.16 gi|330508939|ref|YP_004385367.1| - 5.3e-51 171.8 0.1 4.3e-48 162.4 0.1 3.0 2 0 0 2 2 2 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.27 gi|330508939|ref|YP_004385367.1| - 1.2e-21 75.6 48.6 2.4e-08 33.4 3.5 5.2 4 1 0 4 4 4 3 4Fe-4S binding domain Pyr_redox_2 PF07992.14 gi|330508939|ref|YP_004385367.1| - 2.8e-17 62.9 0.0 6.3e-17 61.7 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_16 PF13484.6 gi|330508939|ref|YP_004385367.1| - 3.9e-16 59.7 23.8 0.00013 22.9 0.3 4.7 4 0 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|330508939|ref|YP_004385367.1| - 6.4e-15 55.5 33.7 1.7e-07 31.7 12.7 4.8 4 1 1 5 5 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330508939|ref|YP_004385367.1| - 1.8e-14 53.1 56.6 8e-06 25.7 4.1 5.3 6 0 0 6 6 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330508939|ref|YP_004385367.1| - 8e-13 48.3 36.2 5.8e-07 29.5 13.9 4.2 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330508939|ref|YP_004385367.1| - 2.9e-12 46.5 34.8 3.4e-07 30.3 11.9 3.3 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330508939|ref|YP_004385367.1| - 2.4e-11 43.6 42.3 7.4e-09 35.6 12.2 4.3 5 0 0 5 5 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330508939|ref|YP_004385367.1| - 4e-11 42.3 46.7 0.00034 20.5 2.9 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330508939|ref|YP_004385367.1| - 3e-10 40.4 13.1 0.0065 16.9 0.0 4.8 4 0 0 4 4 4 3 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|330508939|ref|YP_004385367.1| - 2.2e-09 37.2 0.9 4.3e-09 36.2 0.9 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|330508939|ref|YP_004385367.1| - 1.3e-08 34.8 1.3 1.2e-05 25.1 1.2 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase Fer4_4 PF12800.7 gi|330508939|ref|YP_004385367.1| - 6.9e-08 32.4 36.3 0.0073 16.7 4.6 5.2 4 0 0 4 4 4 3 4Fe-4S binding domain NAD_binding_8 PF13450.6 gi|330508939|ref|YP_004385367.1| - 1.3e-07 31.7 0.0 3.1e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|330508939|ref|YP_004385367.1| - 3.8e-06 26.3 1.0 5.8e-06 25.6 1.0 1.2 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|330508939|ref|YP_004385367.1| - 1e-05 26.0 26.2 0.063 13.8 0.2 4.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain GIDA PF01134.22 gi|330508939|ref|YP_004385367.1| - 3.1e-05 23.3 1.0 4.4e-05 22.8 0.1 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|330508939|ref|YP_004385367.1| - 6.6e-05 22.3 0.0 0.00014 21.2 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Fer4_15 PF13459.6 gi|330508939|ref|YP_004385367.1| - 0.00012 22.7 27.1 0.044 14.5 0.7 4.9 4 1 0 4 4 4 3 4Fe-4S single cluster domain Pyr_redox PF00070.27 gi|330508939|ref|YP_004385367.1| - 0.0003 21.3 0.8 0.0012 19.3 0.5 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|330508939|ref|YP_004385367.1| - 0.0006 19.1 0.3 0.001 18.4 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|330508939|ref|YP_004385367.1| - 0.0015 17.3 0.7 0.0015 17.3 0.7 1.5 2 0 0 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.24 gi|330508939|ref|YP_004385367.1| - 0.0032 16.8 0.2 0.0063 15.8 0.2 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|330508939|ref|YP_004385367.1| - 0.0032 16.8 0.0 0.021 14.1 0.2 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_18 PF13746.6 gi|330508939|ref|YP_004385367.1| - 0.016 15.4 4.8 0.016 15.4 4.8 3.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Lycopene_cycl PF05834.12 gi|330508939|ref|YP_004385367.1| - 0.017 14.2 0.5 0.038 13.0 0.5 1.6 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4_3 PF12798.7 gi|330508939|ref|YP_004385367.1| - 0.018 16.0 5.0 0.018 16.0 5.0 6.0 6 0 0 6 6 4 0 4Fe-4S binding domain AlaDh_PNT_C PF01262.21 gi|330508939|ref|YP_004385367.1| - 0.02 14.2 0.4 0.042 13.1 0.4 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Fer4_22 PF17179.4 gi|330508939|ref|YP_004385367.1| - 0.027 15.3 2.0 0.027 15.3 2.0 4.5 3 1 1 4 4 4 0 4Fe-4S dicluster domain NAD_binding_9 PF13454.6 gi|330508939|ref|YP_004385367.1| - 0.16 12.0 0.9 3.1 7.8 0.4 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Fer4_13 PF13370.6 gi|330508939|ref|YP_004385367.1| - 0.34 11.5 36.0 0.29 11.7 3.5 4.5 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|330508940|ref|YP_004385368.1| - 4.1e-10 40.0 9.0 8e-10 39.0 9.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330508940|ref|YP_004385368.1| - 8.7e-08 32.2 8.9 2e-07 31.1 8.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330508940|ref|YP_004385368.1| - 4.7e-07 30.3 19.7 4e-06 27.3 9.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330508940|ref|YP_004385368.1| - 6.8e-06 26.6 7.6 1.5e-05 25.5 7.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330508940|ref|YP_004385368.1| - 1e-05 25.5 11.7 3.2e-05 24.0 12.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330508940|ref|YP_004385368.1| - 8.4e-05 22.2 12.0 0.01 15.6 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330508940|ref|YP_004385368.1| - 0.00035 20.5 13.6 0.008 16.2 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330508940|ref|YP_004385368.1| - 0.0011 19.9 11.8 0.06 14.3 12.2 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|330508940|ref|YP_004385368.1| - 0.0086 16.1 12.1 0.009 16.1 2.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330508940|ref|YP_004385368.1| - 0.0099 16.0 12.7 0.048 13.8 12.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330508940|ref|YP_004385368.1| - 0.014 15.8 10.2 0.017 15.6 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|330508940|ref|YP_004385368.1| - 0.031 14.8 0.5 0.031 14.8 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|330508940|ref|YP_004385368.1| - 0.055 14.4 15.9 0.58 11.2 5.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330508940|ref|YP_004385368.1| - 0.2 11.8 7.8 1.9 8.7 2.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330508940|ref|YP_004385368.1| - 0.44 11.3 4.6 8.8 7.1 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|330508940|ref|YP_004385368.1| - 5.5 7.9 14.6 1.3 9.9 4.9 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain CCG PF02754.16 gi|330508941|ref|YP_004385369.1| - 8.3e-28 96.4 0.6 1.2e-13 51.0 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain DUF2207 PF09972.9 gi|330508942|ref|YP_004385370.1| - 0.71 8.6 7.5 1 8.0 7.3 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4131 PF13567.6 gi|330508942|ref|YP_004385370.1| - 1.7 8.3 11.9 5.5 6.6 8.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF2070 PF09843.9 gi|330508942|ref|YP_004385370.1| - 4.1 5.6 12.1 4.9 5.3 12.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF1003 PF06210.11 gi|330508943|ref|YP_004385371.1| - 2.1e-28 98.5 1.8 2.9e-28 98.0 1.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1003) SecY PF00344.20 gi|330508943|ref|YP_004385371.1| - 0.076 12.3 0.1 0.098 11.9 0.1 1.1 1 0 0 1 1 1 0 SecY translocase RHH_1 PF01402.21 gi|330508944|ref|YP_004385372.1| - 3.3e-08 33.2 0.0 6.6e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family B2-adapt-app_C PF09066.10 gi|330508944|ref|YP_004385372.1| - 0.0054 16.8 0.0 0.0097 16.0 0.0 1.5 1 0 0 1 1 1 1 Beta2-adaptin appendage, C-terminal sub-domain Mei5_like PF17021.5 gi|330508944|ref|YP_004385372.1| - 0.0061 16.6 0.2 0.014 15.4 0.0 1.7 1 1 0 1 1 1 1 Putative double-strand recombination repair-like TIM PF00121.18 gi|330508946|ref|YP_004385374.1| - 1.3e-11 44.3 0.0 1.6e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|330508946|ref|YP_004385374.1| - 0.00044 19.6 0.1 0.0012 18.2 0.1 1.7 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|330508946|ref|YP_004385374.1| - 0.00077 18.9 0.4 0.00077 18.9 0.4 1.5 2 0 0 2 2 2 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|330508946|ref|YP_004385374.1| - 0.039 13.0 0.2 0.074 12.1 0.2 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase IGPS PF00218.21 gi|330508946|ref|YP_004385374.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.5 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase Acylphosphatase PF00708.18 gi|330508947|ref|YP_004385375.1| - 6.3e-24 84.2 0.0 6.9e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase BLUF PF04940.12 gi|330508947|ref|YP_004385375.1| - 0.13 12.4 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 Sensors of blue-light using FAD Fer4 PF00037.27 gi|330508948|ref|YP_004385376.1| - 1.7e-10 40.3 21.1 3.2e-05 23.6 4.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330508948|ref|YP_004385376.1| - 6.8e-07 30.1 17.1 0.0012 19.7 3.1 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|330508948|ref|YP_004385376.1| - 2.4e-06 27.3 15.7 0.001 19.1 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330508948|ref|YP_004385376.1| - 4.2e-05 23.4 19.8 0.0017 18.3 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330508948|ref|YP_004385376.1| - 6.9e-05 22.9 20.4 0.00033 20.8 20.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330508948|ref|YP_004385376.1| - 8.7e-05 23.0 21.0 0.0063 17.1 2.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330508948|ref|YP_004385376.1| - 0.00038 20.5 19.4 0.0017 18.5 19.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330508948|ref|YP_004385376.1| - 0.00064 20.0 18.1 0.0081 16.6 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330508948|ref|YP_004385376.1| - 0.0008 19.5 21.1 0.015 15.4 3.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330508948|ref|YP_004385376.1| - 0.037 14.5 2.3 0.037 14.5 2.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330508948|ref|YP_004385376.1| - 0.05 14.6 27.6 0.05 14.5 4.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330508948|ref|YP_004385376.1| - 0.081 13.1 18.7 0.088 13.0 2.7 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330508948|ref|YP_004385376.1| - 0.1 13.1 21.1 0.46 11.1 3.0 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330508948|ref|YP_004385376.1| - 0.93 10.4 23.1 1.8 9.4 11.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330508948|ref|YP_004385376.1| - 1.4 9.5 19.6 1.7 9.2 7.8 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I FAD_binding_3 PF01494.19 gi|330508949|ref|YP_004385377.1| - 2.3e-14 53.4 4.2 3.1e-11 43.1 0.5 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|330508949|ref|YP_004385377.1| - 5.8e-09 35.8 4.8 3.1e-08 33.4 4.8 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330508949|ref|YP_004385377.1| - 2.3e-08 33.5 0.6 6.4e-07 28.8 0.2 2.4 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|330508949|ref|YP_004385377.1| - 9.9e-08 31.1 0.4 1.5e-07 30.5 0.4 1.3 1 0 0 1 1 1 1 HI0933-like protein Trp_halogenase PF04820.14 gi|330508949|ref|YP_004385377.1| - 3.5e-07 29.5 0.1 0.0012 17.8 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|330508949|ref|YP_004385377.1| - 1.2e-06 27.9 0.5 0.00068 18.8 0.2 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|330508949|ref|YP_004385377.1| - 9.4e-06 25.1 0.2 2.6e-05 23.6 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|330508949|ref|YP_004385377.1| - 5.1e-05 23.4 0.3 5.1e-05 23.4 0.3 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|330508949|ref|YP_004385377.1| - 5.5e-05 22.5 1.4 0.00039 19.7 1.4 2.2 1 1 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|330508949|ref|YP_004385377.1| - 0.0002 21.0 2.3 0.023 14.3 0.3 2.6 2 1 1 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|330508949|ref|YP_004385377.1| - 0.00052 19.2 2.5 0.00052 19.2 2.5 1.7 1 1 0 2 2 2 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|330508949|ref|YP_004385377.1| - 0.0016 17.8 0.2 0.0027 17.1 0.2 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|330508949|ref|YP_004385377.1| - 0.021 14.1 0.5 0.021 14.1 0.5 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|330508949|ref|YP_004385377.1| - 0.043 12.9 0.1 0.075 12.1 0.1 1.3 1 0 0 1 1 1 0 Squalene epoxidase XdhC_C PF13478.6 gi|330508949|ref|YP_004385377.1| - 0.052 14.1 0.3 0.39 11.2 0.1 2.5 2 1 1 3 3 3 0 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|330508949|ref|YP_004385377.1| - 0.13 12.2 2.5 0.11 12.3 0.6 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|330508949|ref|YP_004385377.1| - 9.6 6.8 8.4 0.23 12.0 0.3 2.4 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF61 PF01886.16 gi|330508950|ref|YP_004385378.1| - 0.011 15.8 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF61 HTH_34 PF13601.6 gi|330508951|ref|YP_004385379.1| - 0.031 14.5 0.0 0.049 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|330508951|ref|YP_004385379.1| - 0.094 12.6 0.1 0.22 11.5 0.1 1.7 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB FeoA PF04023.14 gi|330508952|ref|YP_004385380.1| - 8e-18 64.5 0.0 9e-18 64.3 0.0 1.0 1 0 0 1 1 1 1 FeoA domain His_biosynth PF00977.21 gi|330508953|ref|YP_004385381.1| - 2.6e-76 256.1 0.0 3e-76 255.9 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|330508953|ref|YP_004385381.1| - 0.00028 20.1 0.0 0.28 10.2 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 gi|330508953|ref|YP_004385381.1| - 0.0012 18.2 0.1 1 8.7 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase NMO PF03060.15 gi|330508953|ref|YP_004385381.1| - 0.0017 17.8 0.3 0.081 12.3 0.1 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase ThiG PF05690.14 gi|330508953|ref|YP_004385381.1| - 0.026 13.9 0.1 0.37 10.1 0.0 2.1 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|330508953|ref|YP_004385381.1| - 0.037 13.4 0.3 0.83 9.0 0.1 2.1 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator PcrB PF01884.17 gi|330508953|ref|YP_004385381.1| - 0.13 11.7 0.0 0.36 10.2 0.0 1.7 2 0 0 2 2 2 0 PcrB family DHO_dh PF01180.21 gi|330508953|ref|YP_004385381.1| - 0.14 11.4 0.0 5.5 6.1 0.0 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase GATase PF00117.28 gi|330508954|ref|YP_004385382.1| - 2.2e-21 76.5 0.0 2.4e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|330508954|ref|YP_004385382.1| - 9.7e-07 28.8 0.0 0.012 15.5 0.0 2.0 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|330508954|ref|YP_004385382.1| - 3.2e-05 23.8 0.6 0.042 13.6 0.1 2.2 2 0 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.14 gi|330508954|ref|YP_004385382.1| - 0.00083 19.0 0.2 0.0013 18.3 0.0 1.4 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain ELFV_dehydrog PF00208.21 gi|330508955|ref|YP_004385383.1| - 5.8e-70 235.8 1.9 7.5e-70 235.4 1.9 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|330508955|ref|YP_004385383.1| - 4.3e-54 181.9 0.0 8e-54 181.0 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|330508955|ref|YP_004385383.1| - 0.0065 15.9 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_1 PF00175.21 gi|330508956|ref|YP_004385384.1| - 4.4e-16 59.5 0.0 6.1e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|330508956|ref|YP_004385384.1| - 7.9e-07 29.4 0.0 1.2e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|330508956|ref|YP_004385384.1| - 1.7e-05 25.0 0.0 2.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Ferric reductase NAD binding domain FAD_binding_8 PF08022.12 gi|330508956|ref|YP_004385384.1| - 0.0053 16.8 0.1 0.049 13.7 0.1 2.3 2 1 0 2 2 2 1 FAD-binding domain PDH PF02153.17 gi|330508957|ref|YP_004385385.1| - 1.7e-50 171.5 0.0 1.9e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.15 gi|330508957|ref|YP_004385385.1| - 6.6e-08 32.9 0.0 1.1e-07 32.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|330508957|ref|YP_004385385.1| - 3.4e-06 27.6 0.0 9.2e-06 26.2 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|330508957|ref|YP_004385385.1| - 0.00027 20.4 0.0 0.00056 19.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B12-binding PF02310.19 gi|330508957|ref|YP_004385385.1| - 0.058 13.4 0.2 0.44 10.6 0.0 2.4 2 1 1 3 3 3 0 B12 binding domain Epimerase PF01370.21 gi|330508957|ref|YP_004385385.1| - 0.077 12.4 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Shikimate_dh_N PF08501.11 gi|330508958|ref|YP_004385386.1| - 6.8e-24 83.9 0.0 1.4e-23 83.0 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|330508958|ref|YP_004385386.1| - 6e-15 54.7 0.7 1.3e-14 53.6 0.7 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|330508958|ref|YP_004385386.1| - 1.7e-13 50.8 0.0 2.9e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|330508958|ref|YP_004385386.1| - 2.2e-06 28.1 0.1 4.8e-06 27.1 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|330508958|ref|YP_004385386.1| - 2.8e-05 23.5 0.0 4.5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|330508958|ref|YP_004385386.1| - 4.3e-05 22.9 0.1 0.0033 16.8 0.1 2.2 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Sacchrp_dh_NADP PF03435.18 gi|330508958|ref|YP_004385386.1| - 0.00062 20.0 0.5 0.0043 17.3 0.4 2.2 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|330508958|ref|YP_004385386.1| - 0.0019 17.5 0.4 0.0032 16.8 0.4 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|330508958|ref|YP_004385386.1| - 0.0034 16.9 0.1 0.0052 16.3 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase IlvN PF07991.12 gi|330508958|ref|YP_004385386.1| - 0.0041 16.7 0.1 0.0078 15.8 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|330508958|ref|YP_004385386.1| - 0.034 14.6 0.1 0.055 13.9 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding adh_short_C2 PF13561.6 gi|330508958|ref|YP_004385386.1| - 0.037 13.6 0.2 0.07 12.7 0.2 1.5 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase GFO_IDH_MocA PF01408.22 gi|330508958|ref|YP_004385386.1| - 0.048 14.5 0.0 0.075 13.9 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AdoHcyase_NAD PF00670.21 gi|330508958|ref|YP_004385386.1| - 0.13 12.3 0.2 0.29 11.2 0.1 1.5 1 1 1 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox_3 PF13738.6 gi|330508958|ref|YP_004385386.1| - 0.17 11.1 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF92 PF01940.16 gi|330508959|ref|YP_004385387.1| - 5.3e-55 186.4 18.1 5.3e-55 186.4 18.1 2.9 2 2 0 2 2 2 1 Integral membrane protein DUF92 Prenyltransf PF01255.19 gi|330508960|ref|YP_004385388.1| - 2.3e-28 99.3 0.0 8.4e-27 94.1 0.0 2.0 1 1 1 2 2 2 2 Putative undecaprenyl diphosphate synthase PTS_2-RNA PF01885.16 gi|330508961|ref|YP_004385389.1| - 3e-23 82.8 0.0 3.8e-23 82.5 0.0 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Herpes_ORF11 PF04797.13 gi|330508961|ref|YP_004385389.1| - 0.14 11.0 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus dUTPase protein GCHY-1 PF02649.14 gi|330508962|ref|YP_004385390.1| - 5.5e-82 275.2 0.2 6.3e-82 275.0 0.2 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|330508962|ref|YP_004385390.1| - 0.01 16.3 0.2 0.36 11.4 0.0 2.8 2 1 0 2 2 2 0 Dihydroneopterin aldolase DDE_Tnp_ISAZ013 PF07592.11 gi|330508965|ref|YP_004385393.1| - 3.9e-141 469.5 0.0 4.6e-141 469.2 0.0 1.0 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain HTH_Tnp_Tc3_2 PF01498.18 gi|330508965|ref|YP_004385393.1| - 2.8e-06 27.5 0.0 8.9e-06 25.9 0.0 1.9 1 0 0 1 1 1 1 Transposase HTH_21 PF13276.6 gi|330508965|ref|YP_004385393.1| - 0.00039 20.5 0.0 0.00091 19.3 0.0 1.6 1 0 0 1 1 1 1 HTH-like domain GSH-S_N PF02951.14 gi|330508965|ref|YP_004385393.1| - 0.0024 18.0 0.0 0.0038 17.3 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain HTH_32 PF13565.6 gi|330508965|ref|YP_004385393.1| - 0.0042 17.7 0.1 0.011 16.3 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain UPF0236 PF06782.11 gi|330508965|ref|YP_004385393.1| - 0.012 14.3 0.0 0.02 13.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0236) HTH_33 PF13592.6 gi|330508965|ref|YP_004385393.1| - 0.02 14.5 0.3 0.073 12.7 0.1 2.0 2 1 1 3 3 3 0 Winged helix-turn helix HTH_12 PF08461.10 gi|330508965|ref|YP_004385393.1| - 0.031 14.2 0.4 0.11 12.4 0.1 2.1 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_29 PF13551.6 gi|330508965|ref|YP_004385393.1| - 0.058 13.4 0.1 0.62 10.1 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix Y1_Tnp PF01797.16 gi|330508966|ref|YP_004385394.1| - 8.4e-21 74.3 0.2 9.1e-21 74.2 0.2 1.0 1 0 0 1 1 1 1 Transposase IS200 like DeoC PF01791.9 gi|330508967|ref|YP_004385395.1| - 9.7e-61 205.4 0.0 1.2e-60 205.1 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.14 gi|330508967|ref|YP_004385395.1| - 0.00077 18.8 0.7 0.00077 18.8 0.7 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG ETF PF01012.21 gi|330508967|ref|YP_004385395.1| - 0.02 14.8 0.3 1.3 8.9 0.1 2.9 3 0 0 3 3 3 0 Electron transfer flavoprotein domain DUF561 PF04481.12 gi|330508967|ref|YP_004385395.1| - 0.049 12.8 0.1 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF561) OMPdecase PF00215.24 gi|330508967|ref|YP_004385395.1| - 0.053 13.1 0.1 0.11 12.1 0.1 1.8 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family NMO PF03060.15 gi|330508967|ref|YP_004385395.1| - 0.46 9.8 4.2 0.17 11.2 1.3 1.7 1 1 0 2 2 2 0 Nitronate monooxygenase Glyco_hydro_125 PF06824.11 gi|330508968|ref|YP_004385396.1| - 0.078 11.9 0.0 0.087 11.7 0.0 1.1 1 0 0 1 1 1 0 Metal-independent alpha-mannosidase (GH125) GyrI-like PF06445.15 gi|330508969|ref|YP_004385397.1| - 5.1e-17 62.6 0.0 6.7e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|330508969|ref|YP_004385397.1| - 2.1e-07 31.2 0.0 2.7e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Integron-associated effector binding protein Minor_capsid_3 PF12691.7 gi|330508969|ref|YP_004385397.1| - 0.05 14.0 0.0 0.075 13.4 0.0 1.3 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage DUF5016 PF16408.5 gi|330508969|ref|YP_004385397.1| - 0.15 12.1 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5016) DDE_3 PF13358.6 gi|330508970|ref|YP_004385398.1| - 1.4e-31 109.2 0.0 1.9e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease rve_2 PF13333.6 gi|330508970|ref|YP_004385398.1| - 0.063 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain rve_3 PF13683.6 gi|330508970|ref|YP_004385398.1| - 0.11 12.3 0.3 2.3 8.1 0.0 2.5 3 0 0 3 3 3 0 Integrase core domain Transposase_mut PF00872.18 gi|330508972|ref|YP_004385400.1| - 2.2e-105 352.7 1.9 2.6e-105 352.4 1.9 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|330508972|ref|YP_004385400.1| - 4.9e-08 33.3 0.1 1.3e-07 31.9 0.0 1.8 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.17 gi|330508972|ref|YP_004385400.1| - 0.016 14.9 0.2 0.041 13.6 0.2 1.7 1 1 0 1 1 1 0 Transposase DUF5499 PF17603.2 gi|330508972|ref|YP_004385400.1| - 0.4 11.3 4.9 3.1 8.5 0.1 3.7 3 2 1 4 4 4 0 Family of unknown function (DUF5499) OrfB_Zn_ribbon PF07282.11 gi|330508973|ref|YP_004385401.1| - 5.4e-22 77.5 1.1 1.1e-21 76.5 0.1 2.0 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330508973|ref|YP_004385401.1| - 1.6e-07 31.5 0.5 2.6e-07 30.9 0.5 1.3 1 0 0 1 1 1 1 Probable transposase HypA PF01155.19 gi|330508973|ref|YP_004385401.1| - 0.12 12.4 1.2 0.26 11.3 1.2 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|330508973|ref|YP_004385401.1| - 0.15 11.9 2.8 0.27 11.1 2.8 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_2 PF13923.6 gi|330508973|ref|YP_004385401.1| - 0.98 9.3 4.9 1.6 8.6 4.9 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF4337 PF14235.6 gi|330508973|ref|YP_004385401.1| - 1.3 9.2 5.2 12 5.9 0.0 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4337) NosD PF05048.13 gi|330508974|ref|YP_004385402.1| - 0.0029 16.9 0.0 0.33 10.2 0.1 2.4 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) OrfB_Zn_ribbon PF07282.11 gi|330508975|ref|YP_004385403.1| - 2.8e-16 59.2 3.4 2.8e-16 59.2 3.4 2.3 3 0 0 3 3 3 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|330508975|ref|YP_004385403.1| - 1.4e-08 34.9 0.8 2.8e-08 34.0 0.8 1.4 1 0 0 1 1 1 1 Probable transposase zf-ribbon_3 PF13248.6 gi|330508975|ref|YP_004385403.1| - 0.0015 17.8 9.3 0.23 10.9 5.3 3.4 2 1 0 2 2 2 2 zinc-ribbon domain zf-C2HC5 PF06221.13 gi|330508975|ref|YP_004385403.1| - 0.03 14.3 6.2 0.37 10.8 0.8 2.7 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type HypA PF01155.19 gi|330508975|ref|YP_004385403.1| - 0.03 14.3 0.2 0.03 14.3 0.2 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DASH_Spc34 PF08657.10 gi|330508975|ref|YP_004385403.1| - 0.15 11.9 0.1 0.23 11.2 0.1 1.2 1 0 0 1 1 1 0 DASH complex subunit Spc34 zinc_ribbon_2 PF13240.6 gi|330508975|ref|YP_004385403.1| - 0.15 11.8 11.4 2.2 8.1 0.5 3.4 2 1 1 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|330508975|ref|YP_004385403.1| - 1.1 8.8 7.9 1.5 8.4 0.0 3.5 3 0 0 3 3 3 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|330508975|ref|YP_004385403.1| - 2.4 8.3 11.2 1.2 9.2 0.6 3.3 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|330508975|ref|YP_004385403.1| - 2.9 8.0 13.6 0.21 11.6 2.5 2.8 2 1 0 2 2 2 0 Double zinc ribbon TRAM PF01938.20 gi|330508976|ref|YP_004385404.1| - 3.7e-12 46.0 0.7 4.3e-12 45.8 0.7 1.1 1 0 0 1 1 1 1 TRAM domain Exc PF07825.11 gi|330508976|ref|YP_004385404.1| - 0.079 12.9 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Excisionase-like protein TRAM PF01938.20 gi|330508977|ref|YP_004385405.1| - 3.6e-13 49.3 0.7 4.2e-13 49.1 0.7 1.1 1 0 0 1 1 1 1 TRAM domain ChitinaseA_N PF08329.10 gi|330508977|ref|YP_004385405.1| - 0.092 12.4 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Chitinase A, N-terminal domain Methyltr_RsmB-F PF01189.17 gi|330508978|ref|YP_004385406.1| - 1.9e-52 177.8 0.0 2.5e-52 177.4 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|330508978|ref|YP_004385406.1| - 6.3e-06 26.6 0.0 1e-05 25.9 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_25 PF13649.6 gi|330508978|ref|YP_004385406.1| - 4.4e-05 24.1 0.0 0.0014 19.2 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.19 gi|330508978|ref|YP_004385406.1| - 0.00063 19.9 0.0 0.0015 18.7 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|330508978|ref|YP_004385406.1| - 0.0019 18.0 0.0 0.0036 17.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|330508978|ref|YP_004385406.1| - 0.0035 17.1 0.0 0.0052 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|330508978|ref|YP_004385406.1| - 0.085 13.5 0.0 0.75 10.5 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330508978|ref|YP_004385406.1| - 0.22 10.8 0.0 3.3 7.0 0.0 2.0 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltranf_PUA PF13636.6 gi|330508979|ref|YP_004385407.1| - 2.5e-12 46.6 0.0 3.5e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF TruB-C_2 PF09157.11 gi|330508979|ref|YP_004385407.1| - 0.13 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal Radical_SAM PF04055.21 gi|330508980|ref|YP_004385408.1| - 1.2e-11 45.3 0.4 3e-11 44.0 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily UPF0154 PF03672.13 gi|330508980|ref|YP_004385408.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) LRV PF01816.17 gi|330508981|ref|YP_004385409.1| - 1e-38 129.1 9.6 6.4e-06 26.2 0.1 9.0 9 0 0 9 9 9 8 Leucine rich repeat variant HEAT PF02985.22 gi|330508981|ref|YP_004385409.1| - 4.4e-07 29.6 21.2 1.4 9.4 0.1 8.8 8 1 1 9 9 9 4 HEAT repeat XPC-binding PF09280.11 gi|330508981|ref|YP_004385409.1| - 0.0015 18.2 0.2 2.4 7.9 0.0 4.8 5 2 1 6 6 6 1 XPC-binding domain HEAT_2 PF13646.6 gi|330508981|ref|YP_004385409.1| - 0.0043 17.4 18.0 7.5 7.0 0.3 7.1 3 3 1 4 4 4 1 HEAT repeats acVLRF1 PF18859.1 gi|330508982|ref|YP_004385410.1| - 3.9e-17 62.8 1.3 4.9e-17 62.4 0.1 1.7 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_2 PF03464.15 gi|330508982|ref|YP_004385410.1| - 7.1e-08 32.8 0.0 1.5e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 baeRF_family10 PF18854.1 gi|330508982|ref|YP_004385410.1| - 8.3e-07 29.3 2.6 1.6e-06 28.4 0.1 2.1 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 SlyX PF04102.12 gi|330508982|ref|YP_004385410.1| - 0.00026 21.5 6.6 0.00026 21.5 6.6 2.4 3 0 0 3 3 2 1 SlyX CENP-F_leu_zip PF10473.9 gi|330508982|ref|YP_004385410.1| - 0.0045 17.0 9.3 0.0045 17.0 9.3 1.9 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 baeRF_family2 PF18844.1 gi|330508982|ref|YP_004385410.1| - 0.075 13.1 0.1 0.075 13.1 0.1 1.8 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 Tnp_22_trimer PF17489.2 gi|330508982|ref|YP_004385410.1| - 0.11 12.5 5.5 0.29 11.1 5.5 1.8 1 0 0 1 1 1 0 L1 transposable element trimerization domain Dynactin_p22 PF07426.11 gi|330508982|ref|YP_004385410.1| - 0.12 12.2 6.4 0.058 13.2 4.0 1.6 2 0 0 2 2 2 0 Dynactin subunit p22 UPF0242 PF06785.11 gi|330508982|ref|YP_004385410.1| - 0.14 12.3 6.1 0.9 9.6 5.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus CENP-Q PF13094.6 gi|330508982|ref|YP_004385410.1| - 0.56 10.4 10.7 1.6 8.9 8.4 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Fib_alpha PF08702.10 gi|330508982|ref|YP_004385410.1| - 0.88 9.7 5.4 0.62 10.3 2.1 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family ADIP PF11559.8 gi|330508982|ref|YP_004385410.1| - 0.99 9.5 12.1 7.8 6.6 8.4 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Utp11 PF03998.13 gi|330508982|ref|YP_004385410.1| - 1.6 8.6 9.2 0.18 11.7 4.7 1.6 2 0 0 2 2 2 0 Utp11 protein DUF724 PF05266.14 gi|330508982|ref|YP_004385410.1| - 1.7 8.5 11.3 0.3 10.9 6.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF724) FlaC_arch PF05377.11 gi|330508982|ref|YP_004385410.1| - 1.9 8.9 6.4 2.7 8.5 4.5 2.1 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF16 PF01519.16 gi|330508982|ref|YP_004385410.1| - 4.3 7.9 8.8 0.97 10.0 4.3 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF16 DivIVA PF05103.13 gi|330508982|ref|YP_004385410.1| - 4.5 7.4 11.4 1.8 8.7 8.3 1.8 2 0 0 2 2 2 0 DivIVA protein YabA PF06156.13 gi|330508982|ref|YP_004385410.1| - 5 7.8 7.8 2.7 8.7 4.2 2.2 2 1 0 2 2 2 0 Initiation control protein YabA CpXC PF14353.6 gi|330508984|ref|YP_004385412.1| - 0.027 14.5 3.0 2.1 8.4 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|330508984|ref|YP_004385412.1| - 0.078 13.0 2.7 0.12 12.4 2.7 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|330508984|ref|YP_004385412.1| - 0.12 12.4 4.4 1.2 9.2 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zn-ribbon_14 PF16503.5 gi|330508984|ref|YP_004385412.1| - 0.26 10.8 0.2 0.26 10.8 0.2 2.2 2 0 0 2 2 2 0 Zinc-ribbon Mu-like_Com PF10122.9 gi|330508984|ref|YP_004385412.1| - 6.3 6.3 7.2 6.8 6.2 1.2 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com MJ1316 PF04457.12 gi|330508985|ref|YP_004385413.1| - 4.2e-17 62.7 0.0 5.1e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain bPH_4 PF06713.11 gi|330508985|ref|YP_004385413.1| - 0.027 14.5 0.1 0.04 14.0 0.1 1.2 1 0 0 1 1 1 0 Bacterial PH domain Lactamase_B_2 PF12706.7 gi|330508986|ref|YP_004385414.1| - 7.9e-20 71.2 0.0 1.3e-19 70.5 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|330508986|ref|YP_004385414.1| - 9.8e-07 29.0 1.9 1.8e-06 28.1 1.1 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily PDEase_II PF02112.15 gi|330508986|ref|YP_004385414.1| - 0.099 11.7 0.4 0.13 11.3 0.4 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II zinc_ribbon_6 PF14599.6 gi|330508987|ref|YP_004385415.1| - 0.097 12.7 3.3 7.8 6.6 4.1 2.0 1 1 1 2 2 2 0 Zinc-ribbon Helicase_C PF00271.31 gi|330508988|ref|YP_004385416.1| - 4.4e-29 101.1 0.0 1.1e-23 83.7 0.0 2.4 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|330508988|ref|YP_004385416.1| - 7.5e-27 94.4 0.0 2.1e-26 93.0 0.0 1.8 1 0 0 1 1 1 1 ERCC4 domain ResIII PF04851.15 gi|330508988|ref|YP_004385416.1| - 2.8e-17 63.2 0.0 6.5e-17 62.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|330508988|ref|YP_004385416.1| - 8.6e-17 61.5 0.0 6.1e-16 58.7 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_2 PF12826.7 gi|330508988|ref|YP_004385416.1| - 1.5e-13 50.6 0.0 4.5e-13 49.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|330508988|ref|YP_004385416.1| - 1.5e-10 41.5 0.1 5.9e-10 39.6 0.1 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|330508988|ref|YP_004385416.1| - 1.7e-05 24.4 0.3 0.0018 18.0 0.1 3.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|330508988|ref|YP_004385416.1| - 0.0013 19.1 0.1 0.081 13.3 0.1 3.2 2 1 1 3 3 3 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|330508988|ref|YP_004385416.1| - 0.0035 17.9 0.0 0.015 15.9 0.0 2.1 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold SecA_DEAD PF07517.14 gi|330508988|ref|YP_004385416.1| - 0.019 14.3 0.0 0.028 13.7 0.0 1.4 1 1 0 1 1 1 0 SecA DEAD-like domain ERCC3_RAD25_C PF16203.5 gi|330508988|ref|YP_004385416.1| - 0.019 14.2 0.0 0.037 13.3 0.0 1.4 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase HHH_3 PF12836.7 gi|330508988|ref|YP_004385416.1| - 0.041 14.1 0.0 0.4 11.0 0.0 2.6 1 1 0 1 1 1 0 Helix-hairpin-helix motif DUF2075 PF09848.9 gi|330508988|ref|YP_004385416.1| - 0.051 12.8 0.0 0.15 11.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) LPAM_2 PF13627.6 gi|330508989|ref|YP_004385417.1| - 1.7 8.6 4.9 2.8 7.9 4.9 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site DUF2072 PF09845.9 gi|330508992|ref|YP_004385420.1| - 4.3e-39 133.8 0.0 5e-39 133.6 0.0 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein Prok-RING_1 PF14446.6 gi|330508992|ref|YP_004385420.1| - 0.025 14.5 0.7 0.041 13.8 0.7 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.10 gi|330508992|ref|YP_004385420.1| - 0.039 14.1 0.9 0.089 12.9 0.9 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF2073 PF09846.9 gi|330508993|ref|YP_004385421.1| - 1.3e-42 144.0 1.4 1.4e-42 143.8 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|330508994|ref|YP_004385422.1| - 4.5e-16 58.9 0.0 5.7e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|330508994|ref|YP_004385422.1| - 1.4e-13 50.8 0.0 2.1e-06 27.4 0.0 3.0 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|330508994|ref|YP_004385422.1| - 3.9e-06 26.4 0.0 0.018 14.5 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|330508994|ref|YP_004385422.1| - 2.2e-05 24.4 0.0 0.083 12.8 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase AAA PF00004.29 gi|330508994|ref|YP_004385422.1| - 8.2e-05 23.0 0.0 0.00014 22.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Roc PF08477.13 gi|330508994|ref|YP_004385422.1| - 0.00018 21.7 0.0 0.066 13.4 0.0 2.3 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase FeoB_N PF02421.18 gi|330508994|ref|YP_004385422.1| - 0.00023 20.7 0.2 0.0024 17.4 0.2 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B Septin PF00735.18 gi|330508994|ref|YP_004385422.1| - 0.00044 19.6 0.0 0.00058 19.2 0.0 1.2 1 0 0 1 1 1 1 Septin MMR_HSR1_Xtn PF16897.5 gi|330508994|ref|YP_004385422.1| - 0.0011 19.0 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 gi|330508994|ref|YP_004385422.1| - 0.0015 18.0 0.0 0.2 11.0 0.0 2.3 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_24 PF13479.6 gi|330508994|ref|YP_004385422.1| - 0.0025 17.6 0.0 0.0041 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|330508994|ref|YP_004385422.1| - 0.01 15.4 0.0 0.02 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|330508994|ref|YP_004385422.1| - 0.01 14.9 0.1 0.016 14.3 0.1 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|330508994|ref|YP_004385422.1| - 0.02 14.8 0.0 0.059 13.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.6 gi|330508994|ref|YP_004385422.1| - 0.046 14.3 0.0 0.094 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|330508994|ref|YP_004385422.1| - 0.065 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|330508994|ref|YP_004385422.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|330508994|ref|YP_004385422.1| - 0.075 13.4 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|330508994|ref|YP_004385422.1| - 0.084 13.4 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 ABC transporter MeaB PF03308.16 gi|330508994|ref|YP_004385422.1| - 0.086 11.8 0.0 3.2 6.6 0.0 2.5 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|330508994|ref|YP_004385422.1| - 0.1 13.0 0.0 0.15 12.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 gi|330508994|ref|YP_004385422.1| - 0.14 12.3 0.0 11 6.0 0.0 2.3 1 1 0 2 2 2 0 Dynamin family AAA_22 PF13401.6 gi|330508994|ref|YP_004385422.1| - 0.15 12.3 0.0 0.55 10.5 0.0 2.0 2 1 0 2 2 2 0 AAA domain Radical_SAM PF04055.21 gi|330508995|ref|YP_004385423.1| - 1.5e-14 54.7 0.3 3.3e-14 53.6 0.4 1.5 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|330508995|ref|YP_004385423.1| - 0.0014 19.1 0.1 0.0032 17.9 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|330508995|ref|YP_004385423.1| - 0.031 14.5 0.1 0.064 13.5 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Arginosuc_synth PF00764.19 gi|330508996|ref|YP_004385424.1| - 5.8e-162 539.4 0.0 6.6e-162 539.2 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.17 gi|330508996|ref|YP_004385424.1| - 0.072 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 NAD synthase QueC PF06508.13 gi|330508996|ref|YP_004385424.1| - 0.16 11.5 0.0 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF2111 PF09884.9 gi|330508997|ref|YP_004385425.1| - 4.8e-32 109.9 3.3 6.6e-32 109.4 3.3 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Acetyltransf_1 PF00583.25 gi|330508998|ref|YP_004385426.1| - 2.6e-12 47.0 0.0 3.3e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|330508998|ref|YP_004385426.1| - 3.1e-12 46.5 0.1 3.8e-12 46.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|330508998|ref|YP_004385426.1| - 1.7e-09 37.9 0.2 2.4e-09 37.5 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330508998|ref|YP_004385426.1| - 2.5e-05 24.1 0.1 3.5e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|330508998|ref|YP_004385426.1| - 3.2e-05 24.0 0.0 0.0014 18.7 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|330508998|ref|YP_004385426.1| - 0.025 14.7 0.0 0.048 13.8 0.0 1.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Cellulose_synt PF03552.14 gi|330508998|ref|YP_004385426.1| - 0.13 10.7 0.0 0.16 10.4 0.0 1.0 1 0 0 1 1 1 0 Cellulose synthase Dicty_CTDC PF00526.18 gi|330508999|ref|YP_004385427.1| - 9.5e-34 114.9 151.3 2e-05 24.4 2.4 13.0 12 2 1 13 13 13 11 Dictyostelium (slime mold) repeat DUF87 PF01935.17 gi|330509000|ref|YP_004385428.1| - 9.6e-37 127.3 0.0 1.9e-36 126.3 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|330509000|ref|YP_004385428.1| - 3.1e-09 36.9 0.1 8.2e-09 35.5 0.1 1.7 1 0 0 1 1 1 1 HAS barrel domain DUF853 PF05872.12 gi|330509000|ref|YP_004385428.1| - 1e-06 27.7 0.0 0.013 14.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|330509000|ref|YP_004385428.1| - 8.4e-05 21.6 0.0 0.0015 17.6 0.0 2.3 2 1 0 2 2 2 1 AAA-like domain TrwB_AAD_bind PF10412.9 gi|330509000|ref|YP_004385428.1| - 0.00013 21.0 0.0 0.023 13.6 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 gi|330509000|ref|YP_004385428.1| - 0.0024 17.0 0.0 0.038 13.1 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein T4SS-DNA_transf PF02534.14 gi|330509000|ref|YP_004385428.1| - 0.0081 15.0 0.0 0.016 14.0 0.0 1.5 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer AAA_22 PF13401.6 gi|330509000|ref|YP_004385428.1| - 0.015 15.6 0.0 9.4 6.5 0.0 3.1 3 1 0 3 3 3 0 AAA domain DEAD PF00270.29 gi|330509000|ref|YP_004385428.1| - 0.022 14.5 0.0 1.6 8.5 0.0 2.7 2 1 0 2 2 2 0 DEAD/DEAH box helicase ResIII PF04851.15 gi|330509000|ref|YP_004385428.1| - 0.065 13.2 0.0 0.23 11.5 0.0 1.8 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Zot PF05707.12 gi|330509000|ref|YP_004385428.1| - 0.1 12.2 0.0 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Dodecin PF07311.12 gi|330509001|ref|YP_004385429.1| - 1.7e-26 92.2 0.3 2e-26 92.0 0.3 1.0 1 0 0 1 1 1 1 Dodecin HMG_CoA_synt_C PF08540.10 gi|330509002|ref|YP_004385430.1| - 1.9e-27 96.6 0.0 2.5e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|330509002|ref|YP_004385430.1| - 1.6e-19 70.4 0.0 3e-19 69.5 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III_C PF08541.10 gi|330509002|ref|YP_004385430.1| - 0.045 13.9 0.1 0.22 11.7 0.0 2.1 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Peripla_BP_2 PF01497.18 gi|330509003|ref|YP_004385431.1| - 1.1e-21 77.5 0.0 5.9e-21 75.1 0.0 1.9 1 1 0 1 1 1 1 Periplasmic binding protein DHODB_Fe-S_bind PF10418.9 gi|330509005|ref|YP_004385433.1| - 1.6e-12 47.0 2.2 1.6e-12 47.0 2.2 1.7 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|330509005|ref|YP_004385433.1| - 0.00015 22.3 0.0 0.00047 20.8 0.0 1.8 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_3 PF13085.6 gi|330509005|ref|YP_004385433.1| - 0.0016 18.4 0.1 0.0031 17.5 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.27 gi|330509005|ref|YP_004385433.1| - 0.21 11.6 1.2 0.41 10.6 0.3 1.9 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain AMP-binding PF00501.28 gi|330509006|ref|YP_004385434.1| - 2.3e-111 372.4 0.0 2.7e-111 372.2 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330509006|ref|YP_004385434.1| - 2.4e-19 70.1 0.0 7e-19 68.6 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.6 gi|330509006|ref|YP_004385434.1| - 0.16 12.3 0.0 0.38 11.1 0.0 1.6 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain Glu_synthase PF01645.17 gi|330509007|ref|YP_004385435.1| - 2.4e-14 53.3 0.0 5.3e-10 39.0 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase UvrC_HhH_N PF08459.11 gi|330509008|ref|YP_004385436.1| - 2.1e-53 180.4 0.6 4.1e-53 179.4 0.0 1.8 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 gi|330509008|ref|YP_004385436.1| - 7.6e-10 38.9 0.0 2.4e-09 37.3 0.0 1.9 1 0 0 1 1 1 1 GIY-YIG catalytic domain UVR PF02151.19 gi|330509008|ref|YP_004385436.1| - 2.9e-07 30.0 2.2 7.4e-07 28.7 2.2 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif AIF_C PF14721.6 gi|330509008|ref|YP_004385436.1| - 0.015 15.6 0.2 0.037 14.4 0.1 1.6 2 0 0 2 2 2 0 Apoptosis-inducing factor, mitochondrion-associated, C-term NOA36 PF06524.12 gi|330509008|ref|YP_004385436.1| - 0.029 13.7 0.5 0.046 13.0 0.5 1.2 1 0 0 1 1 1 0 NOA36 protein PPP5 PF08321.12 gi|330509008|ref|YP_004385436.1| - 0.088 13.1 0.1 0.31 11.3 0.1 2.0 2 0 0 2 2 2 0 PPP5 TPR repeat region TMP-TENI PF02581.17 gi|330509009|ref|YP_004385437.1| - 3.7e-61 205.6 0.1 4.2e-61 205.4 0.1 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase His_biosynth PF00977.21 gi|330509009|ref|YP_004385437.1| - 0.0018 17.8 0.0 0.0029 17.1 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|330509009|ref|YP_004385437.1| - 0.0042 16.4 0.2 0.0066 15.7 0.2 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|330509009|ref|YP_004385437.1| - 0.035 13.5 3.3 0.5 9.7 2.4 2.3 1 1 0 2 2 2 0 Nitronate monooxygenase DUF561 PF04481.12 gi|330509009|ref|YP_004385437.1| - 0.068 12.3 0.1 0.28 10.3 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF561) HK PF02110.15 gi|330509010|ref|YP_004385438.1| - 1.6e-76 257.0 5.6 1.8e-76 256.8 5.6 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|330509010|ref|YP_004385438.1| - 9.8e-07 28.5 1.3 1.2e-06 28.3 1.3 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|330509010|ref|YP_004385438.1| - 1e-05 25.0 2.7 1.3e-05 24.7 2.7 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase eRF1_2 PF03464.15 gi|330509010|ref|YP_004385438.1| - 0.14 12.5 0.0 0.89 9.9 0.0 2.1 2 1 1 3 3 3 0 eRF1 domain 2 2-Hacid_dh_C PF02826.19 gi|330509011|ref|YP_004385439.1| - 1.9e-60 203.3 0.1 3.7e-60 202.3 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|330509011|ref|YP_004385439.1| - 1.4e-42 144.6 0.0 5e-42 142.7 0.0 1.9 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|330509011|ref|YP_004385439.1| - 3.5e-05 23.9 0.9 0.00023 21.3 0.1 2.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|330509011|ref|YP_004385439.1| - 0.00077 19.7 0.4 0.00077 19.7 0.4 3.0 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|330509011|ref|YP_004385439.1| - 0.0013 18.3 0.1 0.0055 16.3 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACT PF01842.25 gi|330509011|ref|YP_004385439.1| - 0.0034 17.1 0.0 0.012 15.4 0.0 2.0 1 0 0 1 1 1 1 ACT domain UDPG_MGDP_dh_C PF03720.15 gi|330509011|ref|YP_004385439.1| - 0.026 14.9 0.0 0.092 13.2 0.0 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_7 PF13241.6 gi|330509011|ref|YP_004385439.1| - 0.049 14.1 0.5 0.32 11.5 0.1 2.6 3 0 0 3 3 3 0 Putative NAD(P)-binding FMN_red PF03358.15 gi|330509012|ref|YP_004385440.1| - 4.6e-22 78.4 0.0 6.7e-22 77.9 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|330509012|ref|YP_004385440.1| - 2e-12 47.2 0.0 4e-12 46.3 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|330509012|ref|YP_004385440.1| - 0.12 12.6 0.0 0.75 10.0 0.0 2.1 2 0 0 2 2 2 0 Flavodoxin domain NYN PF01936.18 gi|330509013|ref|YP_004385441.1| - 1.7e-17 64.3 0.0 2.1e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 NYN domain Csa1 PF06023.12 gi|330509014|ref|YP_004385442.1| - 1.7e-61 208.2 0.0 2.5e-61 207.6 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 PDDEXK_1 PF12705.7 gi|330509014|ref|YP_004385442.1| - 0.0004 20.4 0.0 0.0009 19.2 0.0 1.6 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|330509015|ref|YP_004385443.1| - 6.8e-21 75.0 0.1 1.1e-20 74.4 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|330509015|ref|YP_004385443.1| - 2.2e-12 47.4 0.6 1.2e-10 41.8 0.3 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 gi|330509015|ref|YP_004385443.1| - 0.0003 20.2 0.1 0.0018 17.7 0.1 1.8 1 1 1 2 2 2 1 CRISPR-associated exonuclease Csa1 DUF2800 PF10926.8 gi|330509015|ref|YP_004385443.1| - 0.035 13.4 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) CRISPR_Cas2 PF09827.9 gi|330509016|ref|YP_004385444.1| - 9.8e-20 70.5 0.2 1.3e-19 70.1 0.2 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas2 SeqA PF03925.13 gi|330509016|ref|YP_004385444.1| - 0.038 13.9 0.0 0.05 13.6 0.0 1.2 1 0 0 1 1 1 0 SeqA protein C-terminal domain zf-A20 PF01754.16 gi|330509016|ref|YP_004385444.1| - 0.039 13.9 0.5 0.058 13.4 0.5 1.2 1 0 0 1 1 1 0 A20-like zinc finger ADK PF00406.22 gi|330509016|ref|YP_004385444.1| - 0.14 12.2 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Adenylate kinase GPP34 PF05719.11 gi|330509016|ref|YP_004385444.1| - 0.18 11.8 0.0 0.23 11.5 0.0 1.1 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) Cas_Cas1 PF01867.16 gi|330509017|ref|YP_004385445.1| - 2e-75 253.6 0.0 2.7e-75 253.1 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DEAD PF00270.29 gi|330509018|ref|YP_004385446.1| - 3.8e-19 69.1 0.0 3.4e-17 62.8 0.0 2.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|330509018|ref|YP_004385446.1| - 2.6e-13 50.3 0.7 2.7e-12 47.0 0.3 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|330509018|ref|YP_004385446.1| - 1.1e-07 32.0 0.0 2.7e-05 24.3 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit HD_6 PF18019.1 gi|330509018|ref|YP_004385446.1| - 1.2e-05 25.6 0.0 2e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 HD domain Lip_A_acyltrans PF03279.13 gi|330509018|ref|YP_004385446.1| - 0.022 13.9 0.1 0.076 12.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial lipid A biosynthesis acyltransferase P2_Phage_GpR PF06891.11 gi|330509019|ref|YP_004385447.1| - 0.1 12.7 0.1 0.19 11.8 0.1 1.3 1 0 0 1 1 1 0 P2 phage tail completion protein R (GpR) Transposase_20 PF02371.16 gi|330509020|ref|YP_004385448.1| - 5.9e-25 87.4 0.0 1.3e-24 86.3 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|330509020|ref|YP_004385448.1| - 9.3e-23 80.8 0.2 3.7e-22 78.9 0.0 2.0 2 0 0 2 2 2 1 Transposase YfkB PF08756.10 gi|330509020|ref|YP_004385448.1| - 0.0059 16.4 0.1 0.015 15.1 0.1 1.7 1 0 0 1 1 1 1 YfkB-like domain UPF0261 PF06792.11 gi|330509020|ref|YP_004385448.1| - 0.12 11.3 0.1 0.79 8.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0261) DDE_Tnp_IS1 PF03400.13 gi|330509021|ref|YP_004385449.1| - 0.0023 18.3 0.0 0.0037 17.6 0.0 1.3 1 0 0 1 1 1 1 IS1 transposase FAF PF11250.8 gi|330509021|ref|YP_004385449.1| - 0.14 12.4 0.9 14 6.0 0.1 2.9 4 0 0 4 4 4 0 Fantastic Four meristem regulator Zn_Tnp_IS1 PF03811.13 gi|330509022|ref|YP_004385450.1| - 0.021 14.5 1.0 0.036 13.8 1.0 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HTH_23 PF13384.6 gi|330509022|ref|YP_004385450.1| - 0.032 14.0 0.1 0.05 13.4 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain LtuA PF17446.2 gi|330509022|ref|YP_004385450.1| - 0.036 14.5 0.1 0.069 13.6 0.1 1.5 1 0 0 1 1 1 0 Late transcription unit A HTH_40 PF14493.6 gi|330509022|ref|YP_004385450.1| - 0.12 12.9 0.2 0.16 12.4 0.2 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|330509025|ref|YP_004385453.1| - 9.9e-11 41.8 0.1 1.6e-10 41.1 0.0 1.5 1 1 0 1 1 1 1 Transposase HTH_23 PF13384.6 gi|330509025|ref|YP_004385453.1| - 0.002 17.8 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|330509025|ref|YP_004385453.1| - 0.0046 17.0 0.0 0.0099 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PKcGMP_CC PF16808.5 gi|330509025|ref|YP_004385453.1| - 0.033 14.1 0.3 0.074 12.9 0.3 1.6 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4733 PF15878.5 gi|330509025|ref|YP_004385453.1| - 0.062 13.8 0.1 0.13 12.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4733) rve PF00665.26 gi|330509026|ref|YP_004385454.1| - 1.4e-25 89.8 0.0 2.2e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 gi|330509026|ref|YP_004385454.1| - 2.7e-19 69.1 0.3 1.9e-18 66.3 0.3 2.1 2 0 0 2 2 2 1 HTH-like domain rve_3 PF13683.6 gi|330509026|ref|YP_004385454.1| - 3.8e-16 58.6 0.1 9.1e-16 57.4 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|330509026|ref|YP_004385454.1| - 4.7e-08 33.1 3.6 9.4e-08 32.1 2.4 2.1 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 gi|330509026|ref|YP_004385454.1| - 0.00016 21.9 0.3 0.00028 21.1 0.3 1.4 1 0 0 1 1 1 1 DDE domain GP3_package PF16677.5 gi|330509026|ref|YP_004385454.1| - 0.027 14.6 0.1 12 6.1 0.0 2.4 2 0 0 2 2 2 0 DNA-packaging protein gp3 HTH_Tnp_Tc3_2 PF01498.18 gi|330509026|ref|YP_004385454.1| - 0.041 14.1 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_Tnp_1_2 PF13022.6 gi|330509026|ref|YP_004385454.1| - 0.049 13.8 0.1 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase Transposase_mut PF00872.18 gi|330509028|ref|YP_004385456.1| - 2.2e-105 352.7 1.9 2.6e-105 352.4 1.9 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|330509028|ref|YP_004385456.1| - 4.9e-08 33.3 0.1 1.3e-07 31.9 0.0 1.8 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.17 gi|330509028|ref|YP_004385456.1| - 0.016 14.9 0.2 0.041 13.6 0.2 1.7 1 1 0 1 1 1 0 Transposase DUF5499 PF17603.2 gi|330509028|ref|YP_004385456.1| - 0.4 11.3 4.9 3.1 8.5 0.1 3.7 3 2 1 4 4 4 0 Family of unknown function (DUF5499) Romo1 PF10247.9 gi|330509030|ref|YP_004385458.1| - 0.15 12.4 6.4 18 5.8 0.0 3.1 2 1 1 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 Hum_adeno_E3A PF05393.11 gi|330509034|ref|YP_004385462.1| - 0.065 13.2 0.0 0.079 12.9 0.0 1.1 1 0 0 1 1 1 0 Human adenovirus early E3A glycoprotein HicB_lk_antitox PF15919.5 gi|330509035|ref|YP_004385463.1| - 0.00046 20.3 0.0 0.00046 20.3 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|330509036|ref|YP_004385464.1| - 1.8e-14 53.5 0.1 2e-14 53.3 0.1 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, CRISPR_Cas6 PF10040.9 gi|330509037|ref|YP_004385465.1| - 7e-15 55.4 0.1 1.3e-14 54.6 0.1 1.4 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Pentapeptide PF00805.22 gi|330509039|ref|YP_004385467.1| - 5.5e-77 252.8 33.3 5e-10 38.8 1.4 10.1 3 1 6 11 11 11 10 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|330509039|ref|YP_004385467.1| - 2.4e-46 155.8 0.0 1.1e-08 35.1 0.0 5.8 1 1 6 7 7 7 7 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|330509039|ref|YP_004385467.1| - 2.1e-27 95.0 0.0 0.0061 16.7 0.0 8.3 1 1 7 8 8 8 7 Pentapeptide repeats (9 copies) CfAFP PF05264.11 gi|330509039|ref|YP_004385467.1| - 4.2e-08 33.3 0.0 0.0028 17.7 0.0 3.5 1 1 3 4 4 4 2 Choristoneura fumiferana antifreeze protein (CfAFP) Pentapeptide PF00805.22 gi|330509040|ref|YP_004385468.1| - 1.6e-105 343.9 143.4 3.1e-10 39.5 2.1 15.1 3 2 13 20 20 20 19 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|330509040|ref|YP_004385468.1| - 1.2e-51 172.8 6.4 2.6e-09 37.1 0.3 8.4 1 1 7 8 8 8 8 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|330509040|ref|YP_004385468.1| - 1.6e-42 143.4 11.8 0.00055 20.0 0.0 11.8 2 2 7 11 11 11 11 Pentapeptide repeats (9 copies) ABC_sub_bind PF04392.12 gi|330509040|ref|YP_004385468.1| - 1.5e-09 37.5 0.0 3.6e-09 36.3 0.0 1.6 1 1 0 1 1 1 1 ABC transporter substrate binding protein CfAFP PF05264.11 gi|330509040|ref|YP_004385468.1| - 1.1e-06 28.7 0.0 0.28 11.2 0.0 4.4 1 1 2 5 5 5 3 Choristoneura fumiferana antifreeze protein (CfAFP) DUF11 PF01345.18 gi|330509042|ref|YP_004385470.1| - 8.4e-36 122.2 0.0 3.5e-06 27.2 0.0 5.9 6 0 0 6 6 6 5 Domain of unknown function DUF11 Chlam_OMP6 PF03504.13 gi|330509042|ref|YP_004385470.1| - 0.00092 19.5 0.0 4.6 7.6 0.0 4.1 4 0 0 4 4 4 1 Chlamydia cysteine-rich outer membrane protein 6 DDE_5 PF13546.6 gi|330509045|ref|YP_004385473.1| - 6.5e-14 51.9 0.0 1.1e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_2 PF04693.12 gi|330509045|ref|YP_004385473.1| - 1.2e-12 47.7 6.1 3.8e-11 42.8 6.1 2.2 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1 PF01609.21 gi|330509045|ref|YP_004385473.1| - 1e-07 31.8 1.0 1.5e-07 31.3 1.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain SeqA PF03925.13 gi|330509045|ref|YP_004385473.1| - 0.026 14.5 0.1 0.063 13.2 0.1 1.6 1 0 0 1 1 1 0 SeqA protein C-terminal domain Colicin_M PF14859.6 gi|330509045|ref|YP_004385473.1| - 0.13 11.3 0.2 0.22 10.6 0.2 1.3 1 0 0 1 1 1 0 Colicin M DDE_Tnp_IS66 PF03050.14 gi|330509046|ref|YP_004385474.1| - 1.6e-06 27.8 0.6 2.7e-05 23.8 0.6 2.1 1 1 0 1 1 1 1 Transposase IS66 family Zn_ribbon_recom PF13408.6 gi|330509046|ref|YP_004385474.1| - 0.14 12.7 4.6 0.18 12.3 2.2 2.4 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|330509046|ref|YP_004385474.1| - 0.15 12.2 0.7 7.5 6.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|330509046|ref|YP_004385474.1| - 0.21 11.2 0.6 12 5.6 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|330509046|ref|YP_004385474.1| - 0.27 11.3 2.8 1.3 9.1 3.1 1.9 1 1 1 2 2 2 0 Double zinc ribbon YhfH PF14149.6 gi|330509046|ref|YP_004385474.1| - 0.66 10.0 2.5 7.3 6.7 0.3 2.6 2 0 0 2 2 2 0 YhfH-like protein TF_Zn_Ribbon PF08271.12 gi|330509046|ref|YP_004385474.1| - 6.2 6.4 5.5 77 2.9 5.5 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding DUF4277 PF14104.6 gi|330509047|ref|YP_004385475.1| - 7.8e-20 71.3 0.0 9.5e-20 71.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) Fe-S_biosyn PF01521.20 gi|330509048|ref|YP_004385476.1| - 5.2e-08 33.1 0.0 7.7e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis XPG_I PF00867.18 gi|330509049|ref|YP_004385477.1| - 1.1e-25 89.8 0.0 1.7e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|330509049|ref|YP_004385477.1| - 1.6e-17 63.8 0.0 2.4e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|330509049|ref|YP_004385477.1| - 9.4e-05 22.9 0.0 0.00018 22.0 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|330509049|ref|YP_004385477.1| - 0.067 13.8 0.0 0.18 12.4 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain Diphthamide_syn PF01866.17 gi|330509050|ref|YP_004385478.1| - 1.2e-72 244.9 0.0 1.4e-72 244.7 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Met_10 PF02475.16 gi|330509051|ref|YP_004385479.1| - 3.9e-56 190.0 0.0 5.3e-56 189.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|330509051|ref|YP_004385479.1| - 4.4e-14 52.1 0.1 1e-13 50.9 0.1 1.7 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|330509051|ref|YP_004385479.1| - 3.7e-07 30.8 0.0 7.5e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330509051|ref|YP_004385479.1| - 6e-07 29.4 0.0 9.6e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330509051|ref|YP_004385479.1| - 8.4e-07 28.7 0.0 1.4e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|330509051|ref|YP_004385479.1| - 6e-06 25.9 0.0 1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TRM PF02005.16 gi|330509051|ref|YP_004385479.1| - 1e-05 24.9 0.0 1.3e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|330509051|ref|YP_004385479.1| - 1.5e-05 24.7 0.0 2.3e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|330509051|ref|YP_004385479.1| - 5.2e-05 23.0 0.0 8.9e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 RrnaAD PF00398.20 gi|330509051|ref|YP_004385479.1| - 6.4e-05 22.2 0.0 9.3e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.11 gi|330509051|ref|YP_004385479.1| - 0.00069 18.7 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_11 PF08241.12 gi|330509051|ref|YP_004385479.1| - 0.00083 20.0 0.0 0.0017 19.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|330509051|ref|YP_004385479.1| - 0.0036 17.0 0.0 0.0091 15.7 0.0 1.6 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F TehB PF03848.14 gi|330509051|ref|YP_004385479.1| - 0.036 13.5 0.0 0.059 12.8 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB UPF0020 PF01170.18 gi|330509051|ref|YP_004385479.1| - 0.064 12.9 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltrans_SAM PF10672.9 gi|330509051|ref|YP_004385479.1| - 0.079 12.1 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase DNA_methylase PF00145.17 gi|330509051|ref|YP_004385479.1| - 0.099 12.0 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_4 PF02390.17 gi|330509051|ref|YP_004385479.1| - 0.1 12.0 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase DUF4081 PF13312.6 gi|330509051|ref|YP_004385479.1| - 0.14 12.3 0.0 0.36 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4081) TBP PF00352.21 gi|330509052|ref|YP_004385480.1| - 2.4e-53 178.0 1.2 1.1e-25 89.4 0.1 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|330509052|ref|YP_004385480.1| - 3.4e-08 33.5 0.0 0.0028 17.8 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CARDB PF07705.11 gi|330509053|ref|YP_004385481.1| - 0.007 16.6 0.0 0.017 15.4 0.0 1.7 1 0 0 1 1 1 1 CARDB Phage_spike PF18715.1 gi|330509053|ref|YP_004385481.1| - 2.5 8.2 7.0 20 5.3 0.7 2.8 2 0 0 2 2 2 0 Phage spike trimer NKAIN PF05640.14 gi|330509054|ref|YP_004385482.1| - 0.018 14.3 0.0 0.018 14.3 0.0 1.1 1 0 0 1 1 1 0 Na,K-Atpase Interacting protein LAB_N PF07578.11 gi|330509054|ref|YP_004385482.1| - 0.1 12.7 0.1 0.16 12.1 0.1 1.3 1 0 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain TspO_MBR PF03073.15 gi|330509055|ref|YP_004385483.1| - 4.4e-41 140.1 20.9 5e-41 139.9 20.9 1.0 1 0 0 1 1 1 1 TspO/MBR family DUF4428 PF14471.6 gi|330509056|ref|YP_004385484.1| - 0.11 12.5 3.0 0.23 11.4 3.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) Zn-ribbon_8 PF09723.10 gi|330509056|ref|YP_004385484.1| - 0.14 12.3 2.0 0.2 11.8 2.0 1.3 1 0 0 1 1 1 0 Zinc ribbon domain DUF1289 PF06945.13 gi|330509056|ref|YP_004385484.1| - 0.39 10.5 3.1 0.26 11.1 0.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1289) DUF2256 PF10013.9 gi|330509056|ref|YP_004385484.1| - 0.78 9.9 3.1 6.7 6.9 0.3 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) ABC_tran PF00005.27 gi|330509057|ref|YP_004385485.1| - 2.5e-59 199.7 0.2 1.7e-29 103.0 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|330509057|ref|YP_004385485.1| - 2.6e-24 85.5 0.0 1e-17 64.4 0.0 2.4 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|330509057|ref|YP_004385485.1| - 9.6e-14 51.9 2.2 0.00022 21.1 0.0 4.2 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330509057|ref|YP_004385485.1| - 6.6e-13 48.6 1.4 4.8e-05 22.9 0.0 3.3 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|330509057|ref|YP_004385485.1| - 2e-10 41.0 0.9 0.00031 21.0 0.1 3.5 3 1 0 3 3 3 2 AAA domain AAA_29 PF13555.6 gi|330509057|ref|YP_004385485.1| - 1.2e-06 28.2 3.3 0.014 15.2 0.3 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain NACHT PF05729.12 gi|330509057|ref|YP_004385485.1| - 4.6e-06 26.6 0.0 0.02 14.8 0.0 2.6 2 0 0 2 2 2 2 NACHT domain RsgA_GTPase PF03193.16 gi|330509057|ref|YP_004385485.1| - 7.8e-06 25.9 1.2 0.041 13.8 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase IstB_IS21 PF01695.17 gi|330509057|ref|YP_004385485.1| - 2.7e-05 24.0 2.5 0.49 10.1 0.0 3.8 4 0 0 4 4 4 2 IstB-like ATP binding protein AAA_23 PF13476.6 gi|330509057|ref|YP_004385485.1| - 5.2e-05 23.8 0.0 0.092 13.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|330509057|ref|YP_004385485.1| - 5.9e-05 23.5 6.2 0.018 15.5 0.4 2.9 2 2 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|330509057|ref|YP_004385485.1| - 0.00069 19.8 0.0 0.32 11.2 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.6 gi|330509057|ref|YP_004385485.1| - 0.0013 18.4 0.2 1.6 8.2 0.0 2.9 3 0 0 3 3 3 1 AAA domain NB-ARC PF00931.22 gi|330509057|ref|YP_004385485.1| - 0.0017 17.6 0.7 0.5 9.5 0.1 3.2 3 0 0 3 3 3 1 NB-ARC domain MMR_HSR1 PF01926.23 gi|330509057|ref|YP_004385485.1| - 0.0023 18.0 1.3 1.3 9.2 0.1 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|330509057|ref|YP_004385485.1| - 0.0029 18.1 0.2 0.84 10.2 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_24 PF13479.6 gi|330509057|ref|YP_004385485.1| - 0.0032 17.2 0.2 2.2 8.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF87 PF01935.17 gi|330509057|ref|YP_004385485.1| - 0.0034 17.5 1.2 2.4 8.2 0.1 2.3 2 0 0 2 2 2 2 Helicase HerA, central domain Mg_chelatase PF01078.21 gi|330509057|ref|YP_004385485.1| - 0.0049 16.3 0.1 0.55 9.6 0.0 2.7 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|330509057|ref|YP_004385485.1| - 0.0052 16.5 0.1 0.25 11.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|330509057|ref|YP_004385485.1| - 0.0082 16.4 1.7 4 7.7 0.5 3.9 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|330509057|ref|YP_004385485.1| - 0.0083 16.1 0.5 1.6 8.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) PRK PF00485.18 gi|330509057|ref|YP_004385485.1| - 0.0087 15.8 0.2 1.2 8.9 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|330509057|ref|YP_004385485.1| - 0.0097 16.3 0.0 1 9.8 0.0 2.6 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|330509057|ref|YP_004385485.1| - 0.012 15.0 0.8 1.4 8.2 0.1 2.3 2 0 0 2 2 2 0 KaiC TsaE PF02367.17 gi|330509057|ref|YP_004385485.1| - 0.014 15.4 0.5 0.77 9.8 0.0 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_13 PF13166.6 gi|330509057|ref|YP_004385485.1| - 0.014 14.0 0.0 0.89 8.1 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_15 PF13175.6 gi|330509057|ref|YP_004385485.1| - 0.015 15.0 0.0 5 6.7 0.0 3.2 4 0 0 4 4 3 0 AAA ATPase domain NTPase_1 PF03266.15 gi|330509057|ref|YP_004385485.1| - 0.024 14.6 0.8 3.9 7.4 0.1 2.9 3 0 0 3 3 3 0 NTPase APS_kinase PF01583.20 gi|330509057|ref|YP_004385485.1| - 0.027 14.4 0.4 4 7.3 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase CbiA PF01656.23 gi|330509057|ref|YP_004385485.1| - 0.037 14.1 3.9 4.2 7.4 0.1 2.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Sigma54_activat PF00158.26 gi|330509057|ref|YP_004385485.1| - 0.038 13.7 1.3 1.7 8.4 0.0 3.0 3 0 0 3 3 3 0 Sigma-54 interaction domain DUF2075 PF09848.9 gi|330509057|ref|YP_004385485.1| - 0.041 13.1 0.0 1.2 8.2 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) MobB PF03205.14 gi|330509057|ref|YP_004385485.1| - 0.042 13.7 0.8 1.5 8.7 0.1 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.22 gi|330509057|ref|YP_004385485.1| - 0.047 14.1 0.4 3.8 7.9 0.0 2.4 2 0 0 2 2 2 0 RNA helicase ATP-synt_ab PF00006.25 gi|330509057|ref|YP_004385485.1| - 0.047 13.3 0.1 0.9 9.2 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Roc PF08477.13 gi|330509057|ref|YP_004385485.1| - 0.069 13.4 2.2 3 8.1 0.1 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Septin PF00735.18 gi|330509057|ref|YP_004385485.1| - 0.084 12.1 0.7 1 8.6 0.0 2.1 2 0 0 2 2 2 0 Septin Myosin_head PF00063.21 gi|330509057|ref|YP_004385485.1| - 0.085 11.1 0.1 6.5 4.8 0.1 2.1 2 0 0 2 2 2 0 Myosin head (motor domain) AAA_7 PF12775.7 gi|330509057|ref|YP_004385485.1| - 0.088 12.3 0.1 3.4 7.2 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|330509057|ref|YP_004385485.1| - 0.09 13.1 0.2 6.4 7.1 0.0 3.2 3 0 0 3 3 3 0 AAA domain G-alpha PF00503.20 gi|330509057|ref|YP_004385485.1| - 0.12 11.5 0.0 2.8 7.0 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit PduV-EutP PF10662.9 gi|330509057|ref|YP_004385485.1| - 0.15 11.8 1.5 1.4 8.6 0.1 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Pox_A32 PF04665.12 gi|330509057|ref|YP_004385485.1| - 0.35 10.3 1.7 6.9 6.1 0.1 2.4 2 0 0 2 2 2 0 Poxvirus A32 protein ATP_bind_1 PF03029.17 gi|330509057|ref|YP_004385485.1| - 1.1 9.0 3.5 1.6 8.5 0.3 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein BPD_transp_1 PF00528.22 gi|330509058|ref|YP_004385486.1| - 4.9e-19 68.8 12.1 4.9e-19 68.8 12.1 1.9 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|330509058|ref|YP_004385486.1| - 9.5e-09 35.1 11.0 1.3e-08 34.7 0.1 3.7 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|330509059|ref|YP_004385487.1| - 4.5e-34 117.8 7.7 4.5e-34 117.8 7.7 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TrmO PF01980.16 gi|330509060|ref|YP_004385488.1| - 2.4e-35 121.3 0.0 2.9e-35 121.1 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O SBP_bac_5 PF00496.22 gi|330509061|ref|YP_004385489.1| - 3.9e-71 240.0 1.3 5.5e-71 239.5 1.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Nitrate_red_gam PF02665.14 gi|330509063|ref|YP_004385491.1| - 0.00058 19.5 8.9 0.00058 19.5 8.9 3.3 2 1 1 3 3 3 1 Nitrate reductase gamma subunit DUF4808 PF16066.5 gi|330509063|ref|YP_004385491.1| - 0.29 11.7 3.3 0.61 10.6 3.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4808) CCG PF02754.16 gi|330509064|ref|YP_004385492.1| - 8.7e-27 93.2 9.3 3.4e-13 49.6 0.1 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|330509064|ref|YP_004385492.1| - 9.9e-09 35.5 3.8 9.9e-09 35.5 3.8 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330509064|ref|YP_004385492.1| - 1.5e-06 28.2 4.5 1.5e-06 28.2 4.5 2.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330509064|ref|YP_004385492.1| - 2.8e-06 27.8 4.5 2.8e-06 27.8 4.5 3.0 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330509064|ref|YP_004385492.1| - 3.3e-06 27.2 4.9 3.3e-06 27.2 4.9 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330509064|ref|YP_004385492.1| - 8.7e-05 23.4 4.4 8.7e-05 23.4 4.4 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|330509064|ref|YP_004385492.1| - 0.00027 21.4 8.7 0.00027 21.4 8.7 2.8 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330509064|ref|YP_004385492.1| - 0.16 12.8 10.0 7 7.6 0.1 4.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain zf-PHD-like PF15446.6 gi|330509064|ref|YP_004385492.1| - 0.54 9.8 0.0 0.54 9.8 0.0 3.2 3 1 1 4 4 4 0 PHD/FYVE-zinc-finger like domain Fer4_18 PF13746.6 gi|330509064|ref|YP_004385492.1| - 3.6 7.8 8.8 12 6.1 1.4 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330509064|ref|YP_004385492.1| - 4.2 7.6 12.5 5.2 7.3 0.5 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330509064|ref|YP_004385492.1| - 4.6 8.4 17.2 0.71 11.0 3.8 3.1 2 0 0 2 2 2 0 4Fe-4S binding domain F420_ligase PF01996.16 gi|330509065|ref|YP_004385493.1| - 1.4e-58 198.1 0.0 2e-58 197.6 0.0 1.2 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.23 gi|330509065|ref|YP_004385493.1| - 7e-14 51.5 0.2 1.2e-13 50.7 0.2 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|330509065|ref|YP_004385493.1| - 5.7e-09 36.3 0.5 1.2e-08 35.3 0.5 1.5 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|330509065|ref|YP_004385493.1| - 0.082 12.5 2.5 3.7 7.1 0.3 2.2 1 1 1 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases Pterin_bind PF00809.22 gi|330509066|ref|YP_004385494.1| - 7.7e-54 182.9 0.0 1e-53 182.5 0.0 1.2 1 0 0 1 1 1 1 Pterin binding enzyme PEP_mutase PF13714.6 gi|330509066|ref|YP_004385494.1| - 0.018 14.5 0.1 3.1 7.2 0.1 2.5 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase ABC2_membrane PF01061.24 gi|330509067|ref|YP_004385495.1| - 2.8e-11 43.2 28.4 4.5e-11 42.6 28.4 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC_tran PF00005.27 gi|330509068|ref|YP_004385496.1| - 1.2e-27 97.1 0.0 2.4e-27 96.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330509068|ref|YP_004385496.1| - 1.5e-13 51.3 4.0 9.2e-08 32.2 0.3 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|330509068|ref|YP_004385496.1| - 9.1e-05 22.3 0.5 0.29 10.8 0.0 2.3 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|330509068|ref|YP_004385496.1| - 9.8e-05 22.0 0.1 0.00019 21.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|330509068|ref|YP_004385496.1| - 0.00076 20.0 0.1 0.0013 19.2 0.1 1.5 1 0 0 1 1 1 1 AAA domain DUF4162 PF13732.6 gi|330509068|ref|YP_004385496.1| - 0.0022 18.7 0.6 0.0075 17.0 0.6 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) SbcCD_C PF13558.6 gi|330509068|ref|YP_004385496.1| - 0.025 14.8 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|330509068|ref|YP_004385496.1| - 0.051 13.0 0.1 1.5 8.2 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|330509068|ref|YP_004385496.1| - 0.056 13.8 0.0 0.15 12.5 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|330509068|ref|YP_004385496.1| - 0.074 13.0 0.0 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MeaB PF03308.16 gi|330509068|ref|YP_004385496.1| - 0.1 11.6 0.0 0.2 10.6 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|330509068|ref|YP_004385496.1| - 0.18 11.5 0.0 0.36 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain CARDB PF07705.11 gi|330509069|ref|YP_004385497.1| - 0.0003 21.0 0.0 0.16 12.2 0.0 2.7 3 0 0 3 3 3 2 CARDB NPCBM_assoc PF10633.9 gi|330509069|ref|YP_004385497.1| - 0.051 13.8 0.0 13 6.1 0.0 2.5 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase TraK PF06586.11 gi|330509069|ref|YP_004385497.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 TraK protein ABC-3 PF00950.17 gi|330509070|ref|YP_004385498.1| - 1.1e-70 238.1 35.1 1.2e-70 238.0 35.1 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|330509070|ref|YP_004385498.1| - 9.1e-08 31.5 35.9 1.3e-07 30.9 35.4 1.5 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|330509071|ref|YP_004385499.1| - 8.8e-29 100.8 0.0 1.8e-28 99.8 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|330509071|ref|YP_004385499.1| - 3e-12 47.0 0.4 5.2e-05 23.2 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|330509071|ref|YP_004385499.1| - 0.0024 18.0 0.1 0.11 12.8 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|330509071|ref|YP_004385499.1| - 0.0028 17.4 0.0 0.0048 16.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|330509071|ref|YP_004385499.1| - 0.0032 16.9 0.0 0.54 9.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|330509071|ref|YP_004385499.1| - 0.02 14.6 0.1 0.087 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain MeaB PF03308.16 gi|330509071|ref|YP_004385499.1| - 0.02 13.9 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|330509071|ref|YP_004385499.1| - 0.081 12.8 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|330509071|ref|YP_004385499.1| - 0.1 13.1 0.0 0.15 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain ZnuA PF01297.17 gi|330509072|ref|YP_004385500.1| - 2e-69 233.9 0.0 2.4e-69 233.6 0.0 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic PAD_porph PF04371.15 gi|330509075|ref|YP_004385503.1| - 1.3e-121 405.8 0.0 1.9e-121 405.3 0.0 1.2 1 0 0 1 1 1 1 Porphyromonas-type peptidyl-arginine deiminase CN_hydrolase PF00795.22 gi|330509075|ref|YP_004385503.1| - 6.2e-55 186.3 0.0 8.9e-55 185.8 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase PIN PF01850.21 gi|330509076|ref|YP_004385504.1| - 2e-08 34.8 0.1 2.3e-08 34.6 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.16 gi|330509077|ref|YP_004385505.1| - 2e-12 47.3 0.4 2.4e-12 47.1 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF3945 PF13101.6 gi|330509077|ref|YP_004385505.1| - 0.042 13.6 0.1 0.062 13.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) CitMHS PF03600.16 gi|330509078|ref|YP_004385506.1| - 1.5e-32 113.0 34.1 2.2e-32 112.5 34.1 1.3 1 0 0 1 1 1 1 Citrate transporter Aminotran_5 PF00266.19 gi|330509079|ref|YP_004385507.1| - 7.3e-88 295.0 0.0 8.9e-88 294.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|330509079|ref|YP_004385507.1| - 2.1e-06 27.2 0.0 2.8e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|330509079|ref|YP_004385507.1| - 4.4e-05 23.0 0.0 7.5e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family AroM PF07302.11 gi|330509079|ref|YP_004385507.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 AroM protein DUF1201 PF06716.11 gi|330509080|ref|YP_004385508.1| - 2.9 8.0 5.1 1.4 8.9 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1201) ATP-grasp_3 PF02655.14 gi|330509081|ref|YP_004385509.1| - 4e-37 127.7 0.0 5.4e-37 127.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|330509081|ref|YP_004385509.1| - 3.7e-10 39.7 0.0 0.00046 19.7 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.6 gi|330509081|ref|YP_004385509.1| - 1.5e-07 31.2 0.0 2.9e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|330509081|ref|YP_004385509.1| - 6.5e-06 25.8 0.0 4.2e-05 23.2 0.0 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.6 gi|330509081|ref|YP_004385509.1| - 1.8e-05 24.2 0.0 0.002 17.4 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp RimK PF08443.11 gi|330509081|ref|YP_004385509.1| - 0.0001 22.0 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp PF02222.22 gi|330509081|ref|YP_004385509.1| - 0.0021 17.7 0.0 0.39 10.3 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|330509081|ref|YP_004385509.1| - 0.037 13.8 0.1 0.19 11.5 0.1 2.1 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Trm56 PF01994.16 gi|330509082|ref|YP_004385510.1| - 2.8e-50 169.2 0.0 3.5e-50 168.9 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.19 gi|330509082|ref|YP_004385510.1| - 0.03 14.5 0.0 0.043 14.0 0.0 1.1 1 0 0 1 1 1 0 SpoU rRNA Methylase family tRNA_anti-codon PF01336.25 gi|330509083|ref|YP_004385511.1| - 1.6e-08 34.4 0.0 1.9e-07 31.0 0.2 2.7 4 0 0 4 4 4 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.19 gi|330509083|ref|YP_004385511.1| - 2.2e-08 34.3 11.2 2.2e-08 34.3 11.2 2.3 2 0 0 2 2 2 1 DnaJ central domain S1 PF00575.23 gi|330509083|ref|YP_004385511.1| - 2.9e-05 24.3 2.4 7e-05 23.1 0.1 2.6 2 1 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|330509083|ref|YP_004385511.1| - 8.7e-05 22.6 0.1 0.00067 19.8 0.1 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|330509083|ref|YP_004385511.1| - 0.00047 20.4 0.3 0.00086 19.5 0.3 1.4 1 0 0 1 1 1 1 DHH family Anti-TRAP PF15777.5 gi|330509083|ref|YP_004385511.1| - 0.01 15.8 14.0 0.09 12.8 1.4 2.9 2 1 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein S1_2 PF13509.6 gi|330509083|ref|YP_004385511.1| - 0.024 14.7 0.0 0.06 13.4 0.0 1.7 1 0 0 1 1 1 0 S1 domain PHF5 PF03660.14 gi|330509083|ref|YP_004385511.1| - 0.24 11.6 10.9 0.6 10.3 7.3 2.7 2 1 1 3 3 3 0 PHF5-like protein DZR PF12773.7 gi|330509083|ref|YP_004385511.1| - 1.3 9.2 17.6 63 3.7 17.4 2.8 1 1 0 1 1 1 0 Double zinc ribbon DUF5351 PF17302.2 gi|330509083|ref|YP_004385511.1| - 6.2 7.1 16.0 18 5.6 0.5 4.1 3 1 0 3 3 3 0 Family of unknown function (DUF5351) TPR_12 PF13424.6 gi|330509084|ref|YP_004385512.1| - 1.7e-22 79.5 47.9 5.6e-08 33.0 2.3 5.1 2 1 5 7 7 7 6 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330509084|ref|YP_004385512.1| - 3.3e-14 52.0 4.7 0.0013 18.4 0.1 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509084|ref|YP_004385512.1| - 5e-11 41.9 6.5 0.0085 16.2 0.2 4.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330509084|ref|YP_004385512.1| - 4.4e-10 38.9 22.6 0.033 14.3 0.1 8.0 7 1 1 8 8 7 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330509084|ref|YP_004385512.1| - 9.3e-09 34.9 17.6 0.0011 18.7 0.2 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|330509084|ref|YP_004385512.1| - 3.6e-07 29.9 17.1 4.9e-05 22.9 4.2 2.7 1 1 2 3 3 3 3 MalT-like TPR region AAA_16 PF13191.6 gi|330509084|ref|YP_004385512.1| - 2e-05 25.1 1.7 4e-05 24.1 0.2 2.3 2 0 0 2 2 2 1 AAA ATPase domain TPR_7 PF13176.6 gi|330509084|ref|YP_004385512.1| - 8e-05 22.4 19.5 0.99 9.6 0.1 6.6 6 1 1 7 7 6 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509084|ref|YP_004385512.1| - 0.0014 19.2 2.5 0.0014 19.2 2.5 6.3 5 1 0 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509084|ref|YP_004385512.1| - 0.0014 19.0 30.0 0.45 11.1 2.6 6.5 5 1 1 6 6 6 2 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|330509084|ref|YP_004385512.1| - 0.0053 16.8 2.4 0.96 9.6 0.2 2.8 1 1 1 2 2 2 2 Anaphase-promoting complex subunit 5 Coatomer_E PF04733.14 gi|330509084|ref|YP_004385512.1| - 0.022 14.2 7.0 0.088 12.2 2.8 2.6 1 1 0 2 2 2 0 Coatomer epsilon subunit Helicase_RecD PF05127.14 gi|330509084|ref|YP_004385512.1| - 0.074 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Helicase TPR_11 PF13414.6 gi|330509084|ref|YP_004385512.1| - 0.078 12.7 7.6 0.81 9.4 0.6 4.4 4 0 0 4 4 4 0 TPR repeat NACHT PF05729.12 gi|330509084|ref|YP_004385512.1| - 0.12 12.3 0.1 1.5 8.8 0.0 2.6 2 0 0 2 2 2 0 NACHT domain SNAP PF14938.6 gi|330509084|ref|YP_004385512.1| - 0.24 10.8 11.3 1.7 8.0 0.8 3.1 1 1 1 3 3 3 0 Soluble NSF attachment protein, SNAP RPN7 PF10602.9 gi|330509084|ref|YP_004385512.1| - 0.38 10.5 3.6 40 3.9 0.0 3.6 2 1 0 2 2 2 0 26S proteasome subunit RPN7 ANAPC3 PF12895.7 gi|330509084|ref|YP_004385512.1| - 0.59 10.4 4.8 19 5.5 0.1 3.3 3 1 0 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 Peptidase_C1 PF00112.23 gi|330509085|ref|YP_004385513.1| - 2.4e-13 50.7 0.0 3.2e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Papain family cysteine protease Peptidase_C39_2 PF13529.6 gi|330509085|ref|YP_004385513.1| - 0.14 12.7 0.0 0.26 11.8 0.0 1.4 1 0 0 1 1 1 0 Peptidase_C39 like family Inhibitor_I42 PF09394.10 gi|330509086|ref|YP_004385514.1| - 2.6e-17 63.0 0.0 2.7e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 Ribosomal_S3Ae PF01015.18 gi|330509087|ref|YP_004385515.1| - 2.5e-66 223.1 2.5 2.8e-66 222.9 2.5 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DUF4460 PF14687.6 gi|330509087|ref|YP_004385515.1| - 0.14 12.2 0.0 0.28 11.2 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4460) BiPBP_C PF06832.12 gi|330509088|ref|YP_004385516.1| - 0.0014 18.6 0.0 0.0021 18.0 0.0 1.2 1 0 0 1 1 1 1 Penicillin-Binding Protein C-terminus Family Big_7 PF17957.1 gi|330509088|ref|YP_004385516.1| - 0.087 13.6 0.0 0.16 12.8 0.0 1.6 1 1 0 1 1 1 0 Bacterial Ig domain Ibs_toxin PF13956.6 gi|330509088|ref|YP_004385516.1| - 0.2 11.7 0.4 0.2 11.7 0.4 2.2 3 0 0 3 3 3 0 Toxin Ibs, type I toxin-antitoxin system PNP_UDP_1 PF01048.20 gi|330509089|ref|YP_004385517.1| - 1.8e-34 119.1 0.1 2e-34 118.9 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily IF-2B PF01008.17 gi|330509090|ref|YP_004385518.1| - 2.5e-84 282.8 0.0 2.9e-84 282.6 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PBP_like_2 PF12849.7 gi|330509091|ref|YP_004385519.1| - 1.8e-32 113.1 2.7 1.6e-31 110.0 2.7 1.9 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|330509091|ref|YP_004385519.1| - 1.8e-18 66.4 0.0 2.3e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|330509091|ref|YP_004385519.1| - 0.0005 19.9 0.0 0.0034 17.2 0.0 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|330509091|ref|YP_004385519.1| - 0.053 12.9 0.0 0.079 12.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein E1-E2_ATPase PF00122.20 gi|330509092|ref|YP_004385520.1| - 1.7e-50 171.0 0.6 1.7e-50 171.0 0.6 2.7 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|330509092|ref|YP_004385520.1| - 3.1e-38 131.3 4.6 3.1e-38 131.3 4.6 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.26 gi|330509092|ref|YP_004385520.1| - 8.2e-19 67.1 0.0 2e-18 65.8 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase PF00702.26 gi|330509092|ref|YP_004385520.1| - 3.5e-17 63.4 5.3 1.3e-16 61.5 5.3 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|330509092|ref|YP_004385520.1| - 9.4e-14 51.3 0.0 2.1e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|330509092|ref|YP_004385520.1| - 4e-07 30.0 0.5 0.00019 21.2 0.6 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|330509092|ref|YP_004385520.1| - 8.4e-05 23.0 0.0 0.00019 21.9 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF2530 PF10745.9 gi|330509092|ref|YP_004385520.1| - 0.35 11.1 3.1 0.87 9.9 0.4 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2530) PPS_PS PF02006.16 gi|330509093|ref|YP_004385521.1| - 8.5e-76 253.4 0.9 1e-75 253.1 0.9 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase TPP_enzyme_M PF00205.22 gi|330509093|ref|YP_004385521.1| - 0.005 16.6 0.6 0.032 14.0 0.2 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Collagen_mid PF15984.5 gi|330509093|ref|YP_004385521.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial collagen, middle region DUF5053 PF16476.5 gi|330509093|ref|YP_004385521.1| - 0.18 11.5 0.0 2 8.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5053) GHMP_kinases_N PF00288.26 gi|330509094|ref|YP_004385522.1| - 2.6e-08 34.0 1.6 1e-07 32.1 1.6 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|330509094|ref|YP_004385522.1| - 0.036 14.4 1.9 0.079 13.3 0.1 2.2 2 0 0 2 2 2 0 GHMP kinases C terminal DFP PF04127.15 gi|330509095|ref|YP_004385523.1| - 1.5e-50 171.7 0.1 3e-50 170.7 0.1 1.5 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|330509095|ref|YP_004385523.1| - 2.4e-38 131.4 0.2 3.9e-38 130.7 0.2 1.3 1 0 0 1 1 1 1 Flavoprotein Pyr_redox PF00070.27 gi|330509095|ref|YP_004385523.1| - 0.064 13.8 0.0 0.22 12.1 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Apolipoprotein PF01442.18 gi|330509096|ref|YP_004385524.1| - 7.1e-08 32.5 47.5 1.9e-05 24.6 20.5 3.1 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain DUF4164 PF13747.6 gi|330509096|ref|YP_004385524.1| - 3.4e-07 30.5 33.5 0.00029 21.0 4.0 4.9 2 1 3 5 5 5 2 Domain of unknown function (DUF4164) Baculo_PEP_C PF04513.12 gi|330509096|ref|YP_004385524.1| - 1.4e-05 25.2 24.5 0.019 15.0 2.6 5.2 1 1 4 6 6 6 3 Baculovirus polyhedron envelope protein, PEP, C terminus HBM PF16591.5 gi|330509096|ref|YP_004385524.1| - 5.1e-05 22.8 25.4 0.00096 18.7 17.0 4.7 1 1 0 2 2 2 1 Helical bimodular sensor domain DUF3584 PF12128.8 gi|330509096|ref|YP_004385524.1| - 0.00046 17.9 29.7 0.00046 17.9 29.7 2.1 1 1 0 2 2 2 1 Protein of unknown function (DUF3584) CdvA PF18822.1 gi|330509096|ref|YP_004385524.1| - 0.0009 19.1 32.3 0.06 13.2 1.7 5.4 3 2 3 6 6 6 2 CdvA-like coiled-coil domain DUF4407 PF14362.6 gi|330509096|ref|YP_004385524.1| - 0.0012 18.3 25.0 0.24 10.7 11.4 3.2 1 1 2 3 3 3 3 Domain of unknown function (DUF4407) T7SS_ESX_EspC PF10824.8 gi|330509096|ref|YP_004385524.1| - 0.0018 18.7 1.7 2.4 8.7 0.1 3.6 3 0 0 3 3 3 1 Excreted virulence factor EspC, type VII ESX diderm Syntaxin-6_N PF09177.11 gi|330509096|ref|YP_004385524.1| - 0.0034 17.9 31.7 17 6.1 0.4 5.8 1 1 2 3 3 2 0 Syntaxin 6, N-terminal FCH PF00611.23 gi|330509096|ref|YP_004385524.1| - 0.0048 17.2 1.4 0.0048 17.2 1.4 3.2 2 2 0 2 2 2 1 Fes/CIP4, and EFC/F-BAR homology domain ApoLp-III PF07464.11 gi|330509096|ref|YP_004385524.1| - 0.0061 16.7 23.3 0.63 10.1 2.1 4.8 1 1 2 4 4 4 2 Apolipophorin-III precursor (apoLp-III) DUF1664 PF07889.12 gi|330509096|ref|YP_004385524.1| - 0.0064 16.5 25.6 0.21 11.6 3.7 4.7 1 1 1 4 4 4 2 Protein of unknown function (DUF1664) UPF0184 PF03670.13 gi|330509096|ref|YP_004385524.1| - 0.0083 16.5 33.4 0.017 15.5 1.6 6.0 1 1 3 6 6 5 2 Uncharacterised protein family (UPF0184) Ribosomal_S15 PF00312.22 gi|330509096|ref|YP_004385524.1| - 0.013 15.7 4.9 2.5 8.4 0.2 3.4 2 1 1 3 3 3 0 Ribosomal protein S15 WXG100 PF06013.12 gi|330509096|ref|YP_004385524.1| - 0.013 15.7 19.7 3.5 7.9 0.8 6.9 2 2 3 5 5 5 0 Proteins of 100 residues with WXG DUF4439 PF14530.6 gi|330509096|ref|YP_004385524.1| - 0.033 14.9 2.1 1.9 9.2 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4439) SF-assemblin PF06705.11 gi|330509096|ref|YP_004385524.1| - 0.033 13.5 32.9 0.32 10.3 11.1 3.1 1 1 2 3 3 3 0 SF-assemblin/beta giardin HSBP1 PF06825.12 gi|330509096|ref|YP_004385524.1| - 0.041 13.7 1.8 0.041 13.7 1.8 4.8 5 1 0 5 5 3 0 Heat shock factor binding protein 1 Remorin_C PF03763.13 gi|330509096|ref|YP_004385524.1| - 0.059 13.3 18.2 1.4 8.8 2.1 4.6 3 1 2 5 5 5 0 Remorin, C-terminal region FadA PF09403.10 gi|330509096|ref|YP_004385524.1| - 0.085 13.4 37.5 0.2 12.2 2.9 5.0 2 2 3 5 5 5 0 Adhesion protein FadA YlqD PF11068.8 gi|330509096|ref|YP_004385524.1| - 0.17 12.2 35.0 0.35 11.2 2.2 5.0 1 1 3 4 4 4 0 YlqD protein YtxH PF12732.7 gi|330509096|ref|YP_004385524.1| - 0.24 12.0 18.1 1.7e+02 2.8 4.4 5.6 1 1 1 2 2 2 0 YtxH-like protein Laminin_II PF06009.12 gi|330509096|ref|YP_004385524.1| - 0.34 10.9 26.2 0.9 9.6 0.5 4.8 1 1 4 5 5 5 0 Laminin Domain II FUSC PF04632.12 gi|330509096|ref|YP_004385524.1| - 0.42 9.1 5.5 0.27 9.7 0.4 2.2 1 1 1 2 2 2 0 Fusaric acid resistance protein family Erp_C PF06780.11 gi|330509096|ref|YP_004385524.1| - 0.43 10.6 25.3 0.079 13.0 5.6 3.7 1 1 2 3 3 3 0 Erp protein C-terminus Prominin PF05478.11 gi|330509096|ref|YP_004385524.1| - 0.44 8.5 26.6 0.5 8.2 6.9 2.7 1 1 2 3 3 3 0 Prominin ApoO PF09769.9 gi|330509096|ref|YP_004385524.1| - 0.58 10.1 10.4 12 5.9 0.0 4.7 1 1 3 4 4 4 0 Apolipoprotein O DUF1640 PF07798.11 gi|330509096|ref|YP_004385524.1| - 0.58 10.2 41.3 0.88 9.6 9.1 3.9 1 1 3 4 4 4 0 Protein of unknown function (DUF1640) DUF842 PF05811.13 gi|330509096|ref|YP_004385524.1| - 0.65 9.7 9.3 7.3 6.3 0.5 3.6 1 1 2 3 3 3 0 Eukaryotic protein of unknown function (DUF842) NPV_P10 PF05531.12 gi|330509096|ref|YP_004385524.1| - 0.68 10.4 19.3 2.7 8.5 1.0 5.7 2 1 4 6 6 5 0 Nucleopolyhedrovirus P10 protein DUF4600 PF15372.6 gi|330509096|ref|YP_004385524.1| - 0.89 10.0 31.6 1.2 9.5 9.5 4.4 2 1 2 4 4 4 0 Domain of unknown function (DUF4600) Tox-REase-5 PF15648.6 gi|330509096|ref|YP_004385524.1| - 0.93 10.0 4.4 2.4 8.7 0.2 3.1 2 1 1 3 3 2 0 Restriction endonuclease fold toxin 5 Exonuc_VII_L PF02601.15 gi|330509096|ref|YP_004385524.1| - 0.94 9.0 31.7 7.9 5.9 20.8 3.0 1 1 1 2 2 2 0 Exonuclease VII, large subunit Histidinol_dh PF00815.20 gi|330509096|ref|YP_004385524.1| - 1.1 8.1 13.7 0.072 12.1 0.7 2.9 1 1 2 3 3 3 0 Histidinol dehydrogenase Fib_alpha PF08702.10 gi|330509096|ref|YP_004385524.1| - 1.2 9.3 35.0 2.3 8.4 1.8 4.2 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family HJURP_C PF12347.8 gi|330509096|ref|YP_004385524.1| - 1.3 9.1 5.4 25 5.0 0.3 3.3 3 0 0 3 3 2 0 Holliday junction regulator protein family C-terminal repeat Matrilin_ccoil PF10393.9 gi|330509096|ref|YP_004385524.1| - 1.5 8.8 7.2 6.9 6.6 0.1 3.6 3 2 0 3 3 2 0 Trimeric coiled-coil oligomerisation domain of matrilin SHE3 PF17078.5 gi|330509096|ref|YP_004385524.1| - 1.5 8.5 42.5 0.47 10.1 31.2 2.8 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 OmpH PF03938.14 gi|330509096|ref|YP_004385524.1| - 1.6 9.0 40.2 4.1 7.7 10.9 4.4 2 1 1 4 4 4 0 Outer membrane protein (OmpH-like) DCB PF16213.5 gi|330509096|ref|YP_004385524.1| - 1.9 8.1 11.3 1.4 8.6 0.7 3.5 1 1 3 4 4 4 0 Dimerisation and cyclophilin-binding domain of Mon2 FliJ PF02050.16 gi|330509096|ref|YP_004385524.1| - 2 8.7 33.0 0.36 11.1 2.2 5.4 1 1 2 5 5 5 0 Flagellar FliJ protein PIN_8 PF18476.1 gi|330509096|ref|YP_004385524.1| - 2.5 7.9 31.5 8.7 6.1 3.5 3.7 1 1 3 4 4 4 0 PIN like domain BshC PF10079.9 gi|330509096|ref|YP_004385524.1| - 2.6 6.7 29.7 0.043 12.6 5.7 3.4 1 1 2 3 3 3 0 Bacillithiol biosynthesis BshC KxDL PF10241.9 gi|330509096|ref|YP_004385524.1| - 3.1 8.2 32.4 4.6 7.6 4.6 6.2 1 1 7 8 8 8 0 Uncharacterized conserved protein Endonuc-dimeris PF09124.10 gi|330509096|ref|YP_004385524.1| - 3.2 8.0 9.6 9.4 6.5 0.1 3.9 4 0 0 4 4 3 0 T4 recombination endonuclease VII, dimerisation DUF1515 PF07439.11 gi|330509096|ref|YP_004385524.1| - 4.3 7.4 13.4 0.87 9.6 1.0 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF1515) XhlA PF10779.9 gi|330509096|ref|YP_004385524.1| - 6.4 7.1 32.9 0.63 10.3 2.8 6.9 2 1 5 8 8 8 0 Haemolysin XhlA DUF883 PF05957.13 gi|330509096|ref|YP_004385524.1| - 7 7.3 22.8 8.4 7.1 2.1 5.4 1 1 3 5 5 5 0 Bacterial protein of unknown function (DUF883) DUF16 PF01519.16 gi|330509096|ref|YP_004385524.1| - 8.2 7.0 38.9 7.2 7.2 9.7 5.4 1 1 3 4 4 4 0 Protein of unknown function DUF16 DEAD PF00270.29 gi|330509097|ref|YP_004385525.1| - 7.5e-17 61.7 0.0 1.2e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|330509097|ref|YP_004385525.1| - 8.8e-07 29.3 0.0 2.7e-06 27.7 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain RecQ_Zn_bind PF16124.5 gi|330509097|ref|YP_004385525.1| - 0.00097 19.8 0.7 0.0062 17.2 0.7 2.5 1 0 0 1 1 1 1 RecQ zinc-binding SNF2_N PF00176.23 gi|330509097|ref|YP_004385525.1| - 0.0016 17.3 0.0 0.02 13.6 0.0 2.1 2 0 0 2 2 2 1 SNF2 family N-terminal domain DDE_Tnp_1 PF01609.21 gi|330509098|ref|YP_004385526.1| - 3.9e-09 36.5 1.8 8.4e-09 35.4 1.8 1.5 1 1 0 1 1 1 1 Transposase DDE domain MADF_DNA_bdg PF10545.9 gi|330509098|ref|YP_004385526.1| - 0.11 12.8 0.4 1 9.7 0.4 2.6 2 0 0 2 2 2 0 Alcohol dehydrogenase transcription factor Myb/SANT-like TPR_2 PF07719.17 gi|330509099|ref|YP_004385527.1| - 7.5e-44 144.3 24.2 2.6e-06 27.1 0.0 11.9 12 0 0 12 12 12 8 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330509099|ref|YP_004385527.1| - 2.4e-43 144.2 18.6 1.5e-05 24.6 0.0 11.9 12 0 0 12 12 12 10 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509099|ref|YP_004385527.1| - 4.3e-38 126.3 18.6 0.0012 18.8 0.1 12.0 12 1 0 12 12 12 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509099|ref|YP_004385527.1| - 7.5e-34 115.9 21.9 1e-09 38.5 0.2 6.8 5 2 2 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509099|ref|YP_004385527.1| - 1.1e-29 102.8 22.7 6.9e-10 39.4 0.4 7.0 2 2 3 7 7 7 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330509099|ref|YP_004385527.1| - 2.5e-27 93.2 26.1 0.00015 22.3 0.2 9.8 6 3 4 10 10 10 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509099|ref|YP_004385527.1| - 6.8e-25 86.5 22.5 1.9e-06 27.5 0.6 9.1 8 1 1 9 9 9 5 TPR repeat TPR_19 PF14559.6 gi|330509099|ref|YP_004385527.1| - 2.3e-23 82.5 20.4 3.8e-07 30.5 0.0 7.1 6 2 1 7 7 7 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509099|ref|YP_004385527.1| - 1.8e-19 68.6 3.1 0.0037 17.5 0.0 9.5 8 2 2 10 10 9 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509099|ref|YP_004385527.1| - 1.4e-16 60.3 14.1 5.3e-05 23.3 0.2 6.3 5 2 2 7 7 6 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330509099|ref|YP_004385527.1| - 2.8e-12 45.7 13.7 0.6 10.3 0.0 8.8 9 0 0 9 9 9 4 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330509099|ref|YP_004385527.1| - 4.3e-12 46.3 19.4 0.028 14.5 0.3 7.6 1 1 6 7 7 7 4 Domain of Unknown Function (DUF3856) TPR_6 PF13174.6 gi|330509099|ref|YP_004385527.1| - 4.2e-11 42.7 7.5 1 10.2 0.1 8.6 9 0 0 9 9 9 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330509099|ref|YP_004385527.1| - 4.2e-10 39.7 9.5 0.00055 20.1 0.2 5.1 3 2 2 5 5 5 2 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|330509099|ref|YP_004385527.1| - 8.5e-10 38.2 9.7 0.062 12.2 1.2 4.9 1 1 2 4 4 4 4 NMDA receptor-regulated protein 1 TPR_21 PF09976.9 gi|330509099|ref|YP_004385527.1| - 9.8e-10 38.5 12.9 0.019 14.7 0.1 5.4 2 2 3 5 5 5 4 Tetratricopeptide repeat-like domain TPR_MalT PF17874.1 gi|330509099|ref|YP_004385527.1| - 1.4e-09 37.8 5.0 0.00023 20.7 0.1 3.6 2 1 1 3 3 3 2 MalT-like TPR region TPR_10 PF13374.6 gi|330509099|ref|YP_004385527.1| - 1.9e-07 30.7 26.3 0.34 10.8 0.0 8.5 9 0 0 9 9 9 3 Tetratricopeptide repeat BTAD PF03704.17 gi|330509099|ref|YP_004385527.1| - 1e-06 29.2 15.7 0.2 12.1 0.9 5.7 3 2 3 6 6 6 2 Bacterial transcriptional activator domain ChAPs PF09295.10 gi|330509099|ref|YP_004385527.1| - 2e-05 23.8 1.2 0.22 10.5 0.1 3.1 2 1 1 3 3 3 2 ChAPs (Chs5p-Arf1p-binding proteins) DUF3808 PF10300.9 gi|330509099|ref|YP_004385527.1| - 0.028 13.2 0.1 0.028 13.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3808) Alkyl_sulf_dimr PF14863.6 gi|330509099|ref|YP_004385527.1| - 0.056 13.9 5.5 54 4.2 0.0 4.3 3 2 3 6 6 6 0 Alkyl sulfatase dimerisation ANAPC5 PF12862.7 gi|330509099|ref|YP_004385527.1| - 0.066 13.3 4.5 26 5.0 0.2 4.9 4 2 1 5 5 5 0 Anaphase-promoting complex subunit 5 DUF1510 PF07423.11 gi|330509099|ref|YP_004385527.1| - 0.066 13.4 3.3 16 5.7 0.1 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1510) HTH_Bact PF18768.1 gi|330509099|ref|YP_004385527.1| - 0.069 12.7 0.6 16 5.1 0.0 4.6 5 0 0 5 5 5 0 Helix-turn-helix bacterial domain TPR_4 PF07721.14 gi|330509099|ref|YP_004385527.1| - 0.13 12.9 0.1 0.13 12.9 0.1 6.8 7 0 0 7 7 5 0 Tetratricopeptide repeat DUF2802 PF10975.8 gi|330509099|ref|YP_004385527.1| - 0.26 11.4 2.8 51 4.1 0.2 4.5 5 1 0 5 5 5 0 Protein of unknown function (DUF2802) MIT PF04212.18 gi|330509099|ref|YP_004385527.1| - 2.1 8.5 25.7 23 5.2 0.1 8.1 7 1 2 9 9 9 0 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.6 gi|330509099|ref|YP_004385527.1| - 2.2 8.4 6.1 1.8 8.7 0.0 3.9 5 0 0 5 5 3 0 Fis1 C-terminal tetratricopeptide repeat TPR_1 PF00515.28 gi|330509100|ref|YP_004385528.1| - 2.4e-54 179.0 18.8 1.5e-09 37.2 0.1 12.2 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330509100|ref|YP_004385528.1| - 2.8e-48 158.2 21.7 5.3e-08 32.4 0.0 12.0 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509100|ref|YP_004385528.1| - 5.6e-45 147.8 21.1 3e-05 23.9 0.4 12.0 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509100|ref|YP_004385528.1| - 4e-36 122.4 28.3 1.8e-09 37.1 0.4 11.4 8 2 3 11 11 11 6 TPR repeat TPR_14 PF13428.6 gi|330509100|ref|YP_004385528.1| - 1.8e-35 118.5 15.4 1.3e-05 25.6 0.2 10.4 6 3 5 11 11 10 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509100|ref|YP_004385528.1| - 6.2e-35 119.3 20.1 8.2e-10 38.8 0.1 6.7 3 1 3 7 7 6 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509100|ref|YP_004385528.1| - 5.4e-33 113.4 12.1 1.3e-09 38.5 0.0 6.8 4 2 4 8 8 7 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509100|ref|YP_004385528.1| - 5.4e-31 104.7 4.7 0.0075 16.6 0.0 10.9 10 1 1 11 11 10 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509100|ref|YP_004385528.1| - 1e-29 102.8 16.1 2.7e-06 27.8 0.0 7.5 4 3 3 7 7 7 7 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509100|ref|YP_004385528.1| - 1.4e-22 79.6 7.6 1.6e-06 28.2 0.1 6.8 3 2 5 8 8 8 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330509100|ref|YP_004385528.1| - 1.6e-17 62.8 15.5 0.031 14.9 0.1 9.7 11 0 0 11 11 9 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330509100|ref|YP_004385528.1| - 1.2e-14 53.7 20.9 0.28 11.1 0.1 9.8 9 1 2 11 11 10 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330509100|ref|YP_004385528.1| - 1.2e-14 54.3 3.7 0.0014 18.8 0.0 5.8 2 2 3 6 6 6 5 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.7 gi|330509100|ref|YP_004385528.1| - 1.1e-12 48.2 14.4 1.3e-05 25.3 0.4 6.5 2 1 4 7 7 6 3 Domain of Unknown Function (DUF3856) TPR_7 PF13176.6 gi|330509100|ref|YP_004385528.1| - 1.3e-12 46.8 14.0 0.027 14.5 0.1 9.2 10 0 0 10 10 9 3 Tetratricopeptide repeat TPR_21 PF09976.9 gi|330509100|ref|YP_004385528.1| - 7.6e-12 45.3 13.5 0.038 13.7 0.1 6.1 1 1 4 6 6 6 4 Tetratricopeptide repeat-like domain NARP1 PF12569.8 gi|330509100|ref|YP_004385528.1| - 4.8e-11 42.3 11.1 0.0033 16.4 0.4 5.9 3 1 3 7 7 7 4 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|330509100|ref|YP_004385528.1| - 3.2e-10 40.6 6.6 0.28 11.6 0.0 6.7 3 2 3 7 7 7 3 Bacterial transcriptional activator domain SNAP PF14938.6 gi|330509100|ref|YP_004385528.1| - 1.5e-08 34.4 8.5 1.8e-06 27.6 0.5 4.0 1 1 3 4 4 4 2 Soluble NSF attachment protein, SNAP Alkyl_sulf_dimr PF14863.6 gi|330509100|ref|YP_004385528.1| - 1.7e-07 31.8 0.5 0.036 14.5 0.0 4.2 2 1 1 4 4 4 2 Alkyl sulfatase dimerisation TPR_MalT PF17874.1 gi|330509100|ref|YP_004385528.1| - 2.1e-05 24.0 4.6 0.0019 17.7 0.2 3.7 1 1 2 4 4 4 1 MalT-like TPR region PPR PF01535.20 gi|330509100|ref|YP_004385528.1| - 2.3e-05 24.3 1.7 41 4.7 0.0 7.1 8 0 0 8 8 6 0 PPR repeat PPTA PF01239.22 gi|330509100|ref|YP_004385528.1| - 0.00051 19.7 0.0 0.19 11.5 0.0 3.8 3 0 0 3 3 3 1 Protein prenyltransferase alpha subunit repeat TPR_4 PF07721.14 gi|330509100|ref|YP_004385528.1| - 0.00055 20.3 22.2 4.6 8.2 0.0 8.4 10 0 0 10 10 6 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|330509100|ref|YP_004385528.1| - 0.00058 19.4 7.1 17 4.7 0.0 5.4 1 1 4 6 6 6 0 Coatomer epsilon subunit MIT PF04212.18 gi|330509100|ref|YP_004385528.1| - 0.00058 19.9 20.7 7.7 6.7 0.1 8.2 5 3 4 9 9 8 0 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.6 gi|330509100|ref|YP_004385528.1| - 0.00072 19.6 1.2 10 6.3 0.0 5.7 7 0 0 7 7 5 0 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.6 gi|330509100|ref|YP_004385528.1| - 0.0015 18.8 10.3 3.2 8.2 0.5 6.2 2 2 3 6 6 6 1 Tetratricopeptide repeat TPR_5 PF12688.7 gi|330509100|ref|YP_004385528.1| - 0.0041 17.4 3.1 2.3 8.5 0.0 4.9 3 1 3 6 6 6 1 Tetratrico peptide repeat TPR_3 PF07720.12 gi|330509100|ref|YP_004385528.1| - 0.0045 17.0 3.5 0.65 10.1 0.0 5.0 5 0 0 5 5 5 1 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|330509100|ref|YP_004385528.1| - 0.0047 16.9 4.2 14 5.5 0.0 4.6 5 0 0 5 5 4 0 Virulence factor membrane-bound polymerase, C-terminal ANAPC5 PF12862.7 gi|330509100|ref|YP_004385528.1| - 0.012 15.7 2.2 4.7 7.4 0.3 5.0 7 1 1 8 8 4 0 Anaphase-promoting complex subunit 5 DUF2225 PF09986.9 gi|330509100|ref|YP_004385528.1| - 0.028 14.2 7.0 0.38 10.5 1.5 3.5 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) BPS PF08947.10 gi|330509100|ref|YP_004385528.1| - 0.069 13.0 0.8 41 4.1 0.1 3.8 4 0 0 4 4 3 0 BPS (Between PH and SH2) DUF2917 PF11142.8 gi|330509100|ref|YP_004385528.1| - 0.084 12.3 0.0 40 3.7 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2917) HTH_Bact PF18768.1 gi|330509100|ref|YP_004385528.1| - 0.12 12.0 3.5 17 5.1 0.1 5.0 5 0 0 5 5 5 0 Helix-turn-helix bacterial domain Pepsin-I3 PF06394.13 gi|330509100|ref|YP_004385528.1| - 0.14 12.3 0.2 17 5.7 0.0 2.9 2 0 0 2 2 2 0 Pepsin inhibitor-3-like repeated domain Strep_SA_rep PF06696.11 gi|330509100|ref|YP_004385528.1| - 4.5 7.4 16.0 4.6 7.4 0.1 5.7 7 0 0 7 7 4 0 Streptococcal surface antigen repeat DUF1510 PF07423.11 gi|330509100|ref|YP_004385528.1| - 7.8 6.7 8.0 77 3.5 0.0 4.6 5 1 0 5 5 4 0 Domain of unknown function (DUF1510) DDE_Tnp_ISL3 PF01610.17 gi|330509102|ref|YP_004385530.1| - 5.9e-76 255.3 1.4 1.1e-75 254.4 0.6 1.7 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 gi|330509102|ref|YP_004385530.1| - 3.3e-14 52.0 0.1 6.3e-14 51.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 gi|330509102|ref|YP_004385530.1| - 1.9e-10 41.2 6.3 5e-10 39.9 6.3 1.7 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 MULE PF10551.9 gi|330509102|ref|YP_004385530.1| - 0.1 13.0 0.2 0.24 11.8 0.0 1.8 2 0 0 2 2 2 0 MULE transposase domain TPR_1 PF00515.28 gi|330509103|ref|YP_004385531.1| - 1.1e-42 142.2 23.8 4.6e-10 38.9 0.0 8.2 9 1 1 10 10 9 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509103|ref|YP_004385531.1| - 1.5e-39 133.4 15.6 8.2e-08 31.8 0.2 6.3 3 1 3 6 6 6 5 TPR repeat TPR_2 PF07719.17 gi|330509103|ref|YP_004385531.1| - 4.4e-38 126.3 17.8 4.2e-07 29.6 0.0 7.8 7 2 1 8 8 8 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509103|ref|YP_004385531.1| - 1.5e-36 121.5 12.3 7e-07 29.0 0.0 7.5 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509103|ref|YP_004385531.1| - 2.3e-34 115.3 7.5 7.3e-06 26.0 0.1 6.4 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330509103|ref|YP_004385531.1| - 3.2e-27 92.9 5.4 2.2e-05 24.9 0.5 7.2 3 1 4 7 7 7 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509103|ref|YP_004385531.1| - 1.4e-25 89.6 0.3 2.1e-09 37.9 0.0 5.4 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509103|ref|YP_004385531.1| - 1.3e-21 76.7 6.9 5.8e-05 23.3 0.0 5.3 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509103|ref|YP_004385531.1| - 3.6e-21 75.4 3.7 2.1e-08 34.5 0.1 5.0 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509103|ref|YP_004385531.1| - 1.5e-19 69.9 0.0 1.1e-06 28.7 0.2 4.2 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330509103|ref|YP_004385531.1| - 1.9e-14 53.2 5.3 0.17 12.6 0.0 7.5 7 1 0 7 7 7 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330509103|ref|YP_004385531.1| - 1.2e-13 51.1 1.8 7.8e-08 32.4 0.1 4.0 2 2 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|330509103|ref|YP_004385531.1| - 4.2e-10 39.1 0.1 0.0006 18.9 0.0 4.0 1 1 3 4 4 4 3 NMDA receptor-regulated protein 1 TPR_7 PF13176.6 gi|330509103|ref|YP_004385531.1| - 2.7e-07 30.2 6.6 0.53 10.4 0.0 6.4 5 1 2 7 7 7 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330509103|ref|YP_004385531.1| - 2.2e-06 27.3 8.3 4.2 7.4 0.1 7.0 7 0 0 7 7 7 1 Tetratricopeptide repeat MIT PF04212.18 gi|330509103|ref|YP_004385531.1| - 5.8e-06 26.3 4.8 5.5 7.1 0.0 5.3 5 0 0 5 5 5 1 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|330509103|ref|YP_004385531.1| - 8.6e-06 25.9 3.7 1.1 9.3 0.4 5.4 1 1 3 4 4 4 2 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|330509103|ref|YP_004385531.1| - 3.1e-05 24.5 1.6 0.025 15.0 0.2 3.2 2 2 1 3 3 3 1 Bacterial transcriptional activator domain PPTA PF01239.22 gi|330509103|ref|YP_004385531.1| - 0.00029 20.5 0.6 0.18 11.6 0.0 3.1 3 0 0 3 3 2 1 Protein prenyltransferase alpha subunit repeat FAT PF02259.23 gi|330509103|ref|YP_004385531.1| - 0.0017 17.6 6.0 0.13 11.4 0.8 3.6 1 1 1 2 2 2 2 FAT domain Ribosomal_S16 PF00886.19 gi|330509103|ref|YP_004385531.1| - 0.0032 17.5 2.3 8.1 6.6 0.0 4.6 4 1 0 4 4 4 0 Ribosomal protein S16 Fis1_TPR_C PF14853.6 gi|330509103|ref|YP_004385531.1| - 0.0042 17.1 0.4 7.1 6.8 0.0 4.4 5 0 0 5 5 5 0 Fis1 C-terminal tetratricopeptide repeat TPR_4 PF07721.14 gi|330509103|ref|YP_004385531.1| - 0.0066 17.0 2.9 18 6.3 0.0 4.9 5 0 0 5 5 5 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|330509103|ref|YP_004385531.1| - 0.0089 16.5 0.8 6.7 7.2 0.0 3.3 3 1 0 3 3 3 0 Alkyl sulfatase dimerisation TPR_MalT PF17874.1 gi|330509103|ref|YP_004385531.1| - 0.026 13.9 0.1 2.3 7.5 0.0 2.6 2 1 0 2 2 2 0 MalT-like TPR region DUF627 PF04781.12 gi|330509103|ref|YP_004385531.1| - 0.027 14.5 0.0 19 5.3 0.0 3.7 2 2 0 2 2 2 0 Protein of unknown function (DUF627) SHNi-TPR PF10516.9 gi|330509103|ref|YP_004385531.1| - 0.085 12.3 0.2 7.7 6.1 0.0 3.2 3 0 0 3 3 3 0 SHNi-TPR ANAPC5 PF12862.7 gi|330509103|ref|YP_004385531.1| - 0.12 12.5 0.4 1.2 9.2 0.0 2.8 3 1 0 3 3 3 0 Anaphase-promoting complex subunit 5 HTH_Bact PF18768.1 gi|330509103|ref|YP_004385531.1| - 4.5 6.9 9.6 39 3.9 0.6 5.2 5 1 1 6 6 5 0 Helix-turn-helix bacterial domain TPR_1 PF00515.28 gi|330509104|ref|YP_004385532.1| - 4.9e-47 155.9 26.0 8.4e-08 31.7 0.0 12.1 12 0 0 12 12 12 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330509104|ref|YP_004385532.1| - 3e-42 139.3 27.0 5.5e-06 26.1 0.1 11.6 12 0 0 12 12 12 9 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509104|ref|YP_004385532.1| - 2.7e-39 132.6 27.4 2.3e-07 30.4 2.5 10.2 8 2 2 10 10 10 7 TPR repeat TPR_8 PF13181.6 gi|330509104|ref|YP_004385532.1| - 2e-37 124.3 26.2 4.8e-05 23.2 0.1 12.1 11 2 1 12 12 12 8 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509104|ref|YP_004385532.1| - 4.1e-32 110.3 9.1 2.9e-08 33.9 0.0 6.5 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509104|ref|YP_004385532.1| - 1.2e-29 102.6 14.7 1.6e-07 31.9 0.0 7.5 3 2 5 8 8 8 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330509104|ref|YP_004385532.1| - 6.9e-28 95.0 12.4 0.0022 18.7 0.1 10.1 4 3 6 10 10 10 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509104|ref|YP_004385532.1| - 2.9e-24 85.4 14.0 0.00023 21.6 0.0 7.5 6 2 2 8 8 7 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509104|ref|YP_004385532.1| - 1.2e-23 81.8 11.2 0.0028 17.9 0.0 8.2 9 0 0 9 9 7 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509104|ref|YP_004385532.1| - 9.8e-18 64.1 0.4 0.00041 20.4 0.0 5.5 5 1 0 6 6 5 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330509104|ref|YP_004385532.1| - 1.9e-13 49.8 12.7 0.011 15.6 0.0 7.8 9 0 0 9 9 8 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330509104|ref|YP_004385532.1| - 1.2e-12 47.9 1.0 0.018 15.3 0.0 5.5 4 2 3 7 7 6 5 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|330509104|ref|YP_004385532.1| - 3e-11 43.2 5.1 0.0032 17.5 0.0 6.3 7 1 0 7 7 7 3 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.6 gi|330509104|ref|YP_004385532.1| - 3.3e-10 39.2 8.7 0.078 13.0 0.0 7.8 10 0 0 10 10 8 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330509104|ref|YP_004385532.1| - 6.4e-10 39.3 13.5 0.1 12.7 0.6 6.2 3 2 3 6 6 6 3 Domain of Unknown Function (DUF3856) TPR_21 PF09976.9 gi|330509104|ref|YP_004385532.1| - 1.7e-09 37.7 14.6 0.017 14.9 0.1 5.8 2 2 3 5 5 5 4 Tetratricopeptide repeat-like domain NARP1 PF12569.8 gi|330509104|ref|YP_004385532.1| - 6.1e-08 32.0 5.0 0.0089 15.0 0.1 4.1 2 2 2 4 4 4 2 NMDA receptor-regulated protein 1 TPR_6 PF13174.6 gi|330509104|ref|YP_004385532.1| - 7.1e-08 32.6 13.3 9.1 7.2 0.0 9.4 10 0 0 10 10 10 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|330509104|ref|YP_004385532.1| - 3.8e-07 30.6 4.5 0.0073 16.8 0.0 4.3 4 0 0 4 4 4 1 Alkyl sulfatase dimerisation BTAD PF03704.17 gi|330509104|ref|YP_004385532.1| - 6.9e-07 29.8 8.9 0.0002 21.8 0.0 5.5 4 2 1 5 5 5 1 Bacterial transcriptional activator domain HTH_Bact PF18768.1 gi|330509104|ref|YP_004385532.1| - 3.6e-05 23.3 7.6 14 5.4 0.0 7.6 9 0 0 9 9 9 0 Helix-turn-helix bacterial domain SNAP PF14938.6 gi|330509104|ref|YP_004385532.1| - 4.5e-05 23.0 10.5 0.00058 19.4 2.1 4.1 3 1 1 4 4 4 1 Soluble NSF attachment protein, SNAP FAT PF02259.23 gi|330509104|ref|YP_004385532.1| - 9.5e-05 21.8 2.2 0.099 11.8 1.7 3.7 2 1 1 3 3 3 1 FAT domain Coatomer_E PF04733.14 gi|330509104|ref|YP_004385532.1| - 0.00099 18.6 1.5 0.85 9.0 0.0 3.0 3 0 0 3 3 3 2 Coatomer epsilon subunit RPN7 PF10602.9 gi|330509104|ref|YP_004385532.1| - 0.0011 18.8 0.5 3.4 7.3 0.0 4.2 2 2 2 4 4 4 1 26S proteasome subunit RPN7 MIT PF04212.18 gi|330509104|ref|YP_004385532.1| - 0.0026 17.8 17.7 3.1 7.9 0.5 7.7 7 2 3 10 10 9 1 MIT (microtubule interacting and transport) domain SHNi-TPR PF10516.9 gi|330509104|ref|YP_004385532.1| - 0.0035 16.8 3.2 10 5.6 0.0 5.5 7 0 0 7 7 7 0 SHNi-TPR ANAPC5 PF12862.7 gi|330509104|ref|YP_004385532.1| - 0.014 15.4 4.9 4.6 7.4 0.2 5.6 5 2 2 7 7 5 0 Anaphase-promoting complex subunit 5 TOM20_plant PF06552.12 gi|330509104|ref|YP_004385532.1| - 0.027 14.2 5.0 0.35 10.6 0.9 4.1 3 1 0 4 4 4 0 Plant specific mitochondrial import receptor subunit TOM20 DUF5113 PF17140.4 gi|330509104|ref|YP_004385532.1| - 0.045 13.6 6.8 11 5.7 0.0 5.7 6 2 2 8 8 8 0 Domain of unknown function (DUF5113) 14-3-3 PF00244.20 gi|330509104|ref|YP_004385532.1| - 0.054 13.0 1.0 13 5.2 0.0 3.9 4 0 0 4 4 4 0 14-3-3 protein NRBF2_MIT PF17169.4 gi|330509104|ref|YP_004385532.1| - 0.093 13.0 2.6 2.9 8.2 0.0 4.4 5 1 1 6 6 5 0 MIT domain of nuclear receptor-binding factor 2 PBP_N PF17093.5 gi|330509104|ref|YP_004385532.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Penicillin-binding protein N-terminus MarR_2 PF12802.7 gi|330509105|ref|YP_004385533.1| - 0.0017 18.2 0.0 0.004 17.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|330509105|ref|YP_004385533.1| - 0.0073 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|330509105|ref|YP_004385533.1| - 0.018 15.0 0.1 0.033 14.1 0.1 1.5 1 0 0 1 1 1 0 MarR family GntR PF00392.21 gi|330509105|ref|YP_004385533.1| - 0.021 14.4 0.1 0.041 13.5 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.16 gi|330509105|ref|YP_004385533.1| - 0.025 14.9 0.4 0.043 14.2 0.4 1.3 1 0 0 1 1 1 0 Penicillinase repressor SieB PF14163.6 gi|330509105|ref|YP_004385533.1| - 0.029 13.9 0.0 0.1 12.1 0.0 1.9 1 1 0 1 1 1 0 Super-infection exclusion protein B TrmB PF01978.19 gi|330509105|ref|YP_004385533.1| - 0.037 13.9 0.1 0.07 13.0 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TPR_2 PF07719.17 gi|330509106|ref|YP_004385534.1| - 1.1e-21 75.1 5.7 6.3e-05 22.8 0.6 5.7 5 1 1 6 6 6 6 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330509106|ref|YP_004385534.1| - 2.4e-19 68.3 4.2 0.00038 20.2 0.0 5.4 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509106|ref|YP_004385534.1| - 9.1e-18 63.7 3.6 1.3e-05 24.7 0.0 5.1 4 1 1 5 5 5 4 TPR repeat TPR_8 PF13181.6 gi|330509106|ref|YP_004385534.1| - 2.1e-15 55.5 8.3 0.0012 18.8 0.0 5.4 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509106|ref|YP_004385534.1| - 1.1e-13 50.6 3.1 0.0018 18.5 0.0 5.3 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509106|ref|YP_004385534.1| - 2e-13 50.7 6.0 0.00031 21.2 0.2 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330509106|ref|YP_004385534.1| - 8.6e-12 44.8 5.3 0.093 13.6 0.0 6.0 2 1 4 6 6 6 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509106|ref|YP_004385534.1| - 6.6e-11 42.7 0.4 0.00027 21.5 0.0 4.1 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509106|ref|YP_004385534.1| - 2.4e-09 37.4 8.1 0.00045 20.4 0.2 4.6 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509106|ref|YP_004385534.1| - 1.2e-08 34.9 0.0 0.0028 17.8 0.0 3.6 3 1 1 4 4 4 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|330509106|ref|YP_004385534.1| - 4.5e-06 25.9 1.5 0.0011 18.0 0.1 2.4 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 ANAPC3 PF12895.7 gi|330509106|ref|YP_004385534.1| - 5.8e-05 23.2 0.6 0.012 15.8 0.0 3.1 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.17 gi|330509106|ref|YP_004385534.1| - 0.00013 22.5 0.5 0.17 12.4 0.1 2.9 1 1 1 2 2 2 2 Bacterial transcriptional activator domain SNAP PF14938.6 gi|330509106|ref|YP_004385534.1| - 0.00016 21.2 3.7 0.0008 18.9 0.6 2.2 2 1 0 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_7 PF13176.6 gi|330509106|ref|YP_004385534.1| - 0.00024 20.9 2.3 4.3 7.6 0.0 4.5 5 0 0 5 5 4 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330509106|ref|YP_004385534.1| - 0.0028 17.7 4.3 0.2 11.7 0.1 3.6 2 1 2 4 4 4 1 Domain of Unknown Function (DUF3856) TPR_6 PF13174.6 gi|330509106|ref|YP_004385534.1| - 0.0041 17.7 4.4 1.4 9.7 0.0 4.8 5 0 0 5 5 5 1 Tetratricopeptide repeat PPTA PF01239.22 gi|330509106|ref|YP_004385534.1| - 0.0073 16.0 2.5 1.2 9.0 0.1 4.0 4 0 0 4 4 4 1 Protein prenyltransferase alpha subunit repeat Csm2_III-A PF03750.13 gi|330509106|ref|YP_004385534.1| - 0.03 15.2 0.3 0.15 12.9 0.1 2.1 3 0 0 3 3 2 0 Csm2 Type III-A TOM20_plant PF06552.12 gi|330509106|ref|YP_004385534.1| - 0.038 13.7 1.6 0.18 11.6 0.6 2.4 1 1 1 2 2 2 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_10 PF13374.6 gi|330509106|ref|YP_004385534.1| - 0.042 13.7 11.5 1.1 9.2 0.1 5.3 6 0 0 6 6 6 0 Tetratricopeptide repeat MarR_2 PF12802.7 gi|330509107|ref|YP_004385535.1| - 2.5e-05 24.1 0.1 4.9e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|330509107|ref|YP_004385535.1| - 0.00017 21.3 0.2 0.00036 20.3 0.2 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|330509107|ref|YP_004385535.1| - 0.0049 16.7 0.0 0.0086 15.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|330509107|ref|YP_004385535.1| - 0.026 14.6 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_24 PF13412.6 gi|330509107|ref|YP_004385535.1| - 0.1 12.2 0.2 0.18 11.4 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CbiN PF02553.15 gi|330509107|ref|YP_004385535.1| - 0.34 10.9 0.0 0.34 10.9 0.0 1.8 2 0 0 2 2 2 0 Cobalt transport protein component CbiN TPR_1 PF00515.28 gi|330509108|ref|YP_004385536.1| - 9.9e-38 126.5 20.2 2.3e-05 24.0 0.0 9.4 8 1 1 9 9 9 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330509108|ref|YP_004385536.1| - 4.9e-34 113.7 19.9 0.00034 20.5 0.1 8.7 9 0 0 9 9 8 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509108|ref|YP_004385536.1| - 2.2e-28 98.6 8.7 1.6e-08 35.1 0.0 7.5 4 2 4 8 8 7 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509108|ref|YP_004385536.1| - 6.1e-28 94.7 16.3 0.0095 16.1 0.3 8.8 9 0 0 9 9 8 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509108|ref|YP_004385536.1| - 1e-26 92.3 25.9 7.9e-07 28.7 0.1 7.8 4 1 4 8 8 8 6 TPR repeat TPR_14 PF13428.6 gi|330509108|ref|YP_004385536.1| - 2.2e-26 90.3 18.1 0.00039 21.0 0.0 8.1 3 1 5 8 8 8 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509108|ref|YP_004385536.1| - 6.1e-25 85.8 5.8 0.0006 20.0 0.0 8.1 8 1 0 8 8 7 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509108|ref|YP_004385536.1| - 9.7e-19 67.7 17.9 5.3e-05 23.6 1.0 6.2 3 2 3 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509108|ref|YP_004385536.1| - 2.9e-17 62.7 18.6 9.5e-05 22.6 0.5 5.9 3 2 2 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509108|ref|YP_004385536.1| - 9.5e-16 57.7 4.9 0.028 14.6 0.1 6.0 2 1 4 6 6 6 4 Tetratricopeptide repeat NARP1 PF12569.8 gi|330509108|ref|YP_004385536.1| - 1.6e-11 43.9 1.8 0.0068 15.4 0.0 4.9 3 1 1 5 5 5 3 NMDA receptor-regulated protein 1 TPR_7 PF13176.6 gi|330509108|ref|YP_004385536.1| - 4.3e-10 38.9 13.3 0.065 13.3 0.2 7.8 7 1 1 8 8 8 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330509108|ref|YP_004385536.1| - 1.2e-08 34.9 7.5 0.014 15.5 0.1 5.6 7 0 0 7 7 6 2 Fis1 C-terminal tetratricopeptide repeat DUF3856 PF12968.7 gi|330509108|ref|YP_004385536.1| - 8.2e-08 32.4 10.2 0.00099 19.2 0.2 4.7 1 1 2 4 4 4 2 Domain of Unknown Function (DUF3856) ANAPC3 PF12895.7 gi|330509108|ref|YP_004385536.1| - 1.9e-07 31.2 2.2 0.0097 16.1 0.1 4.3 2 1 4 6 6 6 3 Anaphase-promoting complex, cyclosome, subunit 3 TOM20_plant PF06552.12 gi|330509108|ref|YP_004385536.1| - 5.5e-07 29.5 6.5 0.01 15.6 0.2 4.3 2 1 3 5 5 5 2 Plant specific mitochondrial import receptor subunit TOM20 TPR_6 PF13174.6 gi|330509108|ref|YP_004385536.1| - 1.5e-06 28.5 11.4 3.2 8.6 0.0 7.2 8 0 0 8 8 8 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330509108|ref|YP_004385536.1| - 3.7e-06 26.6 24.1 0.02 14.8 0.2 7.4 8 0 0 8 8 8 2 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|330509108|ref|YP_004385536.1| - 3.6e-05 24.2 3.4 1.3 9.5 0.0 4.6 3 2 2 5 5 5 1 Alkyl sulfatase dimerisation DUF4919 PF16266.5 gi|330509108|ref|YP_004385536.1| - 0.0001 22.3 0.2 1.2 9.1 0.0 3.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4919) BTAD PF03704.17 gi|330509108|ref|YP_004385536.1| - 0.00025 21.5 4.9 1.1 9.7 0.1 3.9 2 1 2 4 4 4 2 Bacterial transcriptional activator domain Coatomer_E PF04733.14 gi|330509108|ref|YP_004385536.1| - 0.00056 19.4 1.8 1.4 8.2 0.0 3.3 2 1 1 3 3 3 1 Coatomer epsilon subunit TPR_21 PF09976.9 gi|330509108|ref|YP_004385536.1| - 0.0039 16.9 18.1 0.21 11.3 0.2 4.5 3 1 2 5 5 5 2 Tetratricopeptide repeat-like domain MIT PF04212.18 gi|330509108|ref|YP_004385536.1| - 0.0053 16.8 12.9 1.3 9.1 0.2 6.2 5 2 2 7 7 7 1 MIT (microtubule interacting and transport) domain HTH_Bact PF18768.1 gi|330509108|ref|YP_004385536.1| - 0.013 15.0 2.6 2.3 7.9 0.0 4.8 6 0 0 6 6 6 0 Helix-turn-helix bacterial domain PPTA PF01239.22 gi|330509108|ref|YP_004385536.1| - 0.022 14.5 1.5 13 5.7 0.0 4.4 5 0 0 5 5 5 0 Protein prenyltransferase alpha subunit repeat preATP-grasp_3 PF18301.1 gi|330509108|ref|YP_004385536.1| - 0.038 14.3 0.1 8.8 6.7 0.0 2.9 1 1 2 3 3 3 0 pre ATP-grasp 3 domain DUF627 PF04781.12 gi|330509108|ref|YP_004385536.1| - 0.039 14.0 0.0 3 7.9 0.0 3.7 4 1 0 4 4 4 0 Protein of unknown function (DUF627) NRDE-2 PF08424.10 gi|330509108|ref|YP_004385536.1| - 0.066 12.3 6.1 1.6 7.8 0.2 2.6 3 0 0 3 3 3 0 NRDE-2, necessary for RNA interference FAT PF02259.23 gi|330509108|ref|YP_004385536.1| - 0.1 11.8 4.1 1.5 8.0 0.9 3.5 1 1 1 2 2 2 0 FAT domain ADP_ribosyl_GH PF03747.14 gi|330509108|ref|YP_004385536.1| - 0.11 12.2 1.3 0.24 11.1 0.1 2.0 1 1 0 2 2 2 0 ADP-ribosylglycohydrolase DUF5113 PF17140.4 gi|330509108|ref|YP_004385536.1| - 0.22 11.3 1.7 33 4.3 0.1 4.4 5 1 0 5 5 5 0 Domain of unknown function (DUF5113) DUF2225 PF09986.9 gi|330509108|ref|YP_004385536.1| - 0.27 10.9 4.8 0.49 10.1 0.5 3.0 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) DUF2802 PF10975.8 gi|330509108|ref|YP_004385536.1| - 0.63 10.2 5.6 29 4.9 0.0 4.1 5 0 0 5 5 4 0 Protein of unknown function (DUF2802) TPR_3 PF07720.12 gi|330509108|ref|YP_004385536.1| - 4.5 7.4 11.9 11 6.1 0.1 4.9 6 0 0 6 6 4 0 Tetratricopeptide repeat MarR_2 PF12802.7 gi|330509109|ref|YP_004385537.1| - 1.2e-06 28.3 0.1 2.4e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|330509109|ref|YP_004385537.1| - 0.00029 20.6 0.1 0.00029 20.6 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|330509109|ref|YP_004385537.1| - 0.0027 17.5 0.1 0.0053 16.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|330509109|ref|YP_004385537.1| - 0.0056 16.6 0.3 0.013 15.4 0.4 1.6 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|330509109|ref|YP_004385537.1| - 0.0087 15.6 0.6 0.017 14.6 0.6 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|330509109|ref|YP_004385537.1| - 0.013 15.0 0.2 0.028 14.0 0.2 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Penicillinase_R PF03965.16 gi|330509109|ref|YP_004385537.1| - 0.015 15.6 0.2 0.028 14.8 0.2 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_9 PF08221.11 gi|330509109|ref|YP_004385537.1| - 0.027 14.6 0.0 0.057 13.5 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_27 PF13463.6 gi|330509109|ref|YP_004385537.1| - 0.034 14.6 0.2 0.059 13.9 0.2 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TPR_1 PF00515.28 gi|330509110|ref|YP_004385538.1| - 9.4e-72 234.1 51.2 8.9e-09 34.8 0.1 15.1 15 1 1 16 16 15 13 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330509110|ref|YP_004385538.1| - 7.4e-68 219.3 53.7 1.2e-07 31.2 0.2 15.2 16 1 0 16 16 14 12 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509110|ref|YP_004385538.1| - 9.7e-55 178.3 45.5 1.5e-05 24.9 0.0 14.8 16 1 0 16 16 14 10 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509110|ref|YP_004385538.1| - 2.7e-47 158.2 56.2 3.4e-09 36.2 0.8 14.4 9 5 5 14 14 14 10 TPR repeat TPR_14 PF13428.6 gi|330509110|ref|YP_004385538.1| - 4e-40 133.1 34.7 0.00052 20.6 1.7 13.5 7 4 6 13 13 13 12 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509110|ref|YP_004385538.1| - 9.2e-39 131.8 41.8 1.5e-09 38.3 0.6 10.0 5 3 5 11 11 11 8 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509110|ref|YP_004385538.1| - 5.5e-37 125.9 47.4 9.4e-09 35.4 1.4 11.4 4 2 9 14 14 12 10 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509110|ref|YP_004385538.1| - 1.9e-32 109.3 33.2 0.0013 19.0 0.0 13.9 15 1 0 15 15 13 8 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509110|ref|YP_004385538.1| - 4e-32 110.5 38.1 1.6e-07 31.7 1.9 9.3 3 2 4 9 9 9 8 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330509110|ref|YP_004385538.1| - 8.6e-19 66.9 36.3 0.065 13.9 0.1 13.5 14 1 0 14 14 13 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509110|ref|YP_004385538.1| - 1.5e-18 66.7 27.6 0.0004 20.5 1.4 9.5 3 3 4 10 10 10 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330509110|ref|YP_004385538.1| - 1e-14 53.4 25.0 0.016 15.2 0.5 11.1 11 0 0 11 11 11 4 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330509110|ref|YP_004385538.1| - 1.1e-14 54.7 18.2 0.031 14.4 0.1 9.3 4 3 2 6 6 6 5 Domain of Unknown Function (DUF3856) ANAPC3 PF12895.7 gi|330509110|ref|YP_004385538.1| - 1.6e-14 53.9 15.6 0.00036 20.7 0.2 6.3 5 1 1 6 6 6 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|330509110|ref|YP_004385538.1| - 9.9e-11 41.2 51.6 0.0038 17.0 0.0 12.6 14 0 0 14 14 13 4 Tetratricopeptide repeat BTAD PF03704.17 gi|330509110|ref|YP_004385538.1| - 2.1e-08 34.7 24.9 0.048 14.1 0.1 8.1 3 2 4 9 9 9 4 Bacterial transcriptional activator domain NARP1 PF12569.8 gi|330509110|ref|YP_004385538.1| - 3.8e-08 32.7 11.6 0.83 8.5 0.0 7.1 2 2 5 7 7 7 2 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|330509110|ref|YP_004385538.1| - 3.4e-07 30.2 14.5 0.75 9.9 0.1 7.3 6 1 1 7 7 7 1 Fis1 C-terminal tetratricopeptide repeat TPR_5 PF12688.7 gi|330509110|ref|YP_004385538.1| - 3.4e-07 30.5 10.4 0.16 12.2 0.3 6.4 4 2 2 6 6 6 2 Tetratrico peptide repeat TPR_21 PF09976.9 gi|330509110|ref|YP_004385538.1| - 3.9e-05 23.5 24.9 0.0058 16.4 0.4 7.1 3 3 3 6 6 6 3 Tetratricopeptide repeat-like domain SRP_TPR_like PF17004.5 gi|330509110|ref|YP_004385538.1| - 8.3e-05 22.6 1.6 2 8.5 0.0 4.8 4 2 0 4 4 4 1 Putative TPR-like repeat DUF4919 PF16266.5 gi|330509110|ref|YP_004385538.1| - 0.00024 21.1 0.3 6.2 6.7 0.0 4.0 3 1 1 4 4 4 0 Domain of unknown function (DUF4919) TPR_3 PF07720.12 gi|330509110|ref|YP_004385538.1| - 0.00033 20.6 10.1 0.21 11.6 0.1 5.5 5 0 0 5 5 4 2 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|330509110|ref|YP_004385538.1| - 0.00049 20.6 11.4 1.2 9.5 0.1 5.7 4 2 1 6 6 6 1 Alkyl sulfatase dimerisation MIT PF04212.18 gi|330509110|ref|YP_004385538.1| - 0.00051 20.1 34.6 0.35 11.0 0.5 10.5 11 2 1 12 12 12 2 MIT (microtubule interacting and transport) domain FAT PF02259.23 gi|330509110|ref|YP_004385538.1| - 0.00077 18.8 8.4 1.4 8.1 0.1 5.1 3 1 2 5 5 5 1 FAT domain DUF3775 PF12616.8 gi|330509110|ref|YP_004385538.1| - 0.0039 17.2 3.7 4 7.5 0.0 5.0 6 0 0 6 6 4 1 Protein of unknown function (DUF3775) PPR PF01535.20 gi|330509110|ref|YP_004385538.1| - 0.021 15.0 1.5 6.8 7.2 0.0 5.3 6 0 0 6 6 4 0 PPR repeat SLATT_1 PF18181.1 gi|330509110|ref|YP_004385538.1| - 0.033 14.1 0.4 3.7 7.5 0.0 3.1 3 0 0 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 1 DUF5113 PF17140.4 gi|330509110|ref|YP_004385538.1| - 0.039 13.7 7.6 10 5.9 0.1 5.7 4 1 2 6 6 5 0 Domain of unknown function (DUF5113) Bep_C_terminal PF17841.1 gi|330509110|ref|YP_004385538.1| - 0.049 13.9 0.7 1 9.6 0.0 3.2 3 0 0 3 3 3 0 BID domain of Bartonella effector protein (Bep) Peptidase_M15_4 PF13539.6 gi|330509110|ref|YP_004385538.1| - 0.051 14.1 0.6 15 6.2 0.1 3.8 3 0 0 3 3 3 0 D-alanyl-D-alanine carboxypeptidase TruB_N PF01509.18 gi|330509110|ref|YP_004385538.1| - 0.086 13.2 0.1 17 5.8 0.0 3.7 3 2 2 5 5 4 0 TruB family pseudouridylate synthase (N terminal domain) LemA PF04011.12 gi|330509110|ref|YP_004385538.1| - 0.09 12.6 2.5 16 5.4 0.0 4.3 5 0 0 5 5 4 0 LemA family DUF5344 PF17279.2 gi|330509110|ref|YP_004385538.1| - 0.15 12.6 5.4 0.33 11.6 0.1 3.9 4 1 0 4 4 2 0 Family of unknown function (DUF5344) SHNi-TPR PF10516.9 gi|330509110|ref|YP_004385538.1| - 0.32 10.5 12.4 1.3 8.5 0.2 5.6 8 0 0 8 8 4 0 SHNi-TPR TOM20_plant PF06552.12 gi|330509110|ref|YP_004385538.1| - 0.41 10.4 12.1 0.63 9.8 0.6 5.1 3 2 2 6 6 5 0 Plant specific mitochondrial import receptor subunit TOM20 PPTA PF01239.22 gi|330509110|ref|YP_004385538.1| - 0.52 10.1 8.5 1.3 8.9 0.1 4.6 5 0 0 5 5 4 0 Protein prenyltransferase alpha subunit repeat Wzy_C_2 PF11846.8 gi|330509110|ref|YP_004385538.1| - 1.6 8.6 12.7 1.2 9.1 0.4 5.0 6 0 0 6 6 4 0 Virulence factor membrane-bound polymerase, C-terminal TPR_20 PF14561.6 gi|330509110|ref|YP_004385538.1| - 2.8 8.3 18.4 18 5.7 0.1 6.4 6 2 2 8 8 6 0 Tetratricopeptide repeat HTH_Bact PF18768.1 gi|330509110|ref|YP_004385538.1| - 3.2 7.4 20.3 5.2 6.7 0.1 7.9 9 0 0 9 9 8 0 Helix-turn-helix bacterial domain Dicty_CTDC PF00526.18 gi|330509111|ref|YP_004385539.1| - 2.5e-48 161.6 130.1 8.6e-07 28.8 7.9 10.9 10 0 0 10 10 10 10 Dictyostelium (slime mold) repeat Mucin-like PF16058.5 gi|330509111|ref|YP_004385539.1| - 0.00018 21.5 17.8 0.00018 21.5 17.8 4.8 2 1 2 5 5 5 3 Mucin-like TPR_2 PF07719.17 gi|330509112|ref|YP_004385540.1| - 1.8e-43 143.1 37.4 8.8e-05 22.3 0.1 13.3 13 0 0 13 13 13 12 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509112|ref|YP_004385540.1| - 2.9e-42 139.4 32.9 0.00055 19.9 0.0 12.6 13 0 0 13 13 12 11 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330509112|ref|YP_004385540.1| - 4.5e-42 140.2 40.0 3.2e-06 26.7 0.1 13.4 13 0 0 13 13 13 11 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509112|ref|YP_004385540.1| - 1.1e-34 117.9 36.2 3.2e-05 23.5 0.2 12.2 12 0 0 12 12 12 9 TPR repeat TPR_12 PF13424.6 gi|330509112|ref|YP_004385540.1| - 8.1e-24 83.7 28.9 6.5e-07 29.5 0.8 7.9 5 2 3 8 8 8 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509112|ref|YP_004385540.1| - 1.2e-23 81.7 20.0 0.13 12.7 0.0 11.4 11 0 0 11 11 10 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330509112|ref|YP_004385540.1| - 1.8e-23 81.2 26.5 0.00031 21.3 0.1 12.2 7 5 6 13 13 13 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509112|ref|YP_004385540.1| - 3.6e-19 69.1 29.3 2e-07 31.6 1.6 8.1 4 2 5 9 9 9 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330509112|ref|YP_004385540.1| - 1.7e-10 40.9 25.4 0.22 12.2 0.0 10.5 11 0 0 11 11 11 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509112|ref|YP_004385540.1| - 1.8e-10 41.2 27.0 0.014 15.9 0.5 8.3 6 1 2 9 9 9 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509112|ref|YP_004385540.1| - 5.7e-09 36.0 12.4 0.059 13.5 0.1 8.1 3 2 6 9 9 9 3 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330509112|ref|YP_004385540.1| - 3.4e-07 30.4 18.6 0.037 14.1 1.4 6.4 2 1 2 4 4 4 3 Domain of Unknown Function (DUF3856) ANAPC3 PF12895.7 gi|330509112|ref|YP_004385540.1| - 4.4e-05 23.6 15.5 0.59 10.4 0.4 5.8 4 1 2 6 6 6 3 Anaphase-promoting complex, cyclosome, subunit 3 HTH_Bact PF18768.1 gi|330509112|ref|YP_004385540.1| - 0.00011 21.7 1.9 6.5 6.4 0.0 5.9 6 0 0 6 6 6 1 Helix-turn-helix bacterial domain PPTA PF01239.22 gi|330509112|ref|YP_004385540.1| - 0.00023 20.8 0.0 9.8 6.1 0.0 4.5 4 0 0 4 4 4 0 Protein prenyltransferase alpha subunit repeat BTAD PF03704.17 gi|330509112|ref|YP_004385540.1| - 0.00029 21.3 6.8 0.55 10.6 0.1 5.1 4 1 1 5 5 5 1 Bacterial transcriptional activator domain TPR_7 PF13176.6 gi|330509112|ref|YP_004385540.1| - 0.00065 19.5 17.0 5.3 7.3 0.1 9.3 9 1 1 10 10 10 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330509112|ref|YP_004385540.1| - 0.00073 19.6 6.6 20 5.3 0.0 6.4 7 0 0 7 7 7 0 Fis1 C-terminal tetratricopeptide repeat DUF1510 PF07423.11 gi|330509112|ref|YP_004385540.1| - 0.00084 19.4 4.6 7.3 6.8 0.1 5.1 4 1 1 5 5 5 0 Domain of unknown function (DUF1510) LemA PF04011.12 gi|330509112|ref|YP_004385540.1| - 0.0045 16.9 1.0 5.2 6.9 0.0 5.0 4 2 1 5 5 5 1 LemA family MAS20 PF02064.15 gi|330509112|ref|YP_004385540.1| - 0.056 13.5 0.6 31 4.7 0.0 4.3 5 1 1 6 6 5 0 MAS20 protein import receptor TPR_10 PF13374.6 gi|330509112|ref|YP_004385540.1| - 0.059 13.3 25.6 5.2 7.1 0.0 8.9 10 0 0 10 10 10 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|330509112|ref|YP_004385540.1| - 0.061 13.0 0.1 0.061 13.0 0.1 5.2 2 1 4 6 6 6 0 Tetratricopeptide repeat-like domain NRBF2_MIT PF17169.4 gi|330509112|ref|YP_004385540.1| - 0.14 12.4 2.3 1.7 8.9 0.0 3.5 3 1 2 5 5 3 0 MIT domain of nuclear receptor-binding factor 2 Alkyl_sulf_dimr PF14863.6 gi|330509112|ref|YP_004385540.1| - 0.16 12.4 11.5 4.1 7.9 0.5 4.8 4 1 1 5 5 5 0 Alkyl sulfatase dimerisation PPR PF01535.20 gi|330509112|ref|YP_004385540.1| - 0.21 11.9 1.8 33 5.0 0.0 4.6 5 0 0 5 5 3 0 PPR repeat ANAPC5 PF12862.7 gi|330509112|ref|YP_004385540.1| - 0.52 10.4 8.7 14 5.9 0.0 5.6 4 1 0 4 4 4 0 Anaphase-promoting complex subunit 5 TPR_1 PF00515.28 gi|330509113|ref|YP_004385541.1| - 4.7e-51 168.6 12.6 9.8e-07 28.3 0.0 12.5 12 1 1 13 13 13 9 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330509113|ref|YP_004385541.1| - 2.8e-50 164.4 23.9 5.5e-07 29.2 0.0 12.5 12 1 1 13 13 13 10 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509113|ref|YP_004385541.1| - 2.8e-48 158.1 18.0 3.7e-05 23.6 0.0 11.9 12 0 0 12 12 12 9 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509113|ref|YP_004385541.1| - 5.5e-41 138.7 21.5 5.1e-10 39.5 0.0 7.1 6 1 1 7 7 7 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509113|ref|YP_004385541.1| - 9.7e-36 122.2 16.5 3.2e-08 34.1 0.5 8.2 5 2 3 8 8 8 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330509113|ref|YP_004385541.1| - 1.9e-34 115.4 23.9 5.4e-05 23.7 0.1 11.1 4 2 7 11 11 11 8 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509113|ref|YP_004385541.1| - 3.4e-34 116.2 26.2 2.7e-10 39.8 0.1 11.5 10 2 1 11 11 11 6 TPR repeat TPR_19 PF14559.6 gi|330509113|ref|YP_004385541.1| - 1.8e-26 92.4 19.6 2.7e-06 27.8 0.2 7.3 4 2 2 7 7 7 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509113|ref|YP_004385541.1| - 9.1e-24 82.1 16.8 0.00044 20.4 0.0 10.7 10 1 0 10 10 10 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509113|ref|YP_004385541.1| - 1.1e-22 80.0 7.6 1.8e-05 24.8 0.0 7.4 3 2 4 8 8 8 7 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330509113|ref|YP_004385541.1| - 2e-16 60.3 20.3 3e-05 24.1 2.7 7.2 1 1 4 6 6 6 4 Domain of Unknown Function (DUF3856) ANAPC3 PF12895.7 gi|330509113|ref|YP_004385541.1| - 2e-16 59.9 10.1 0.0062 16.7 0.0 7.4 3 1 4 8 8 8 5 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|330509113|ref|YP_004385541.1| - 2e-15 56.7 12.9 0.0045 16.0 0.9 6.4 2 1 4 7 7 7 7 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|330509113|ref|YP_004385541.1| - 4.7e-12 46.6 15.4 0.12 12.8 0.1 6.2 2 2 4 6 6 6 4 Bacterial transcriptional activator domain TPR_7 PF13176.6 gi|330509113|ref|YP_004385541.1| - 1.5e-10 40.3 20.0 0.15 12.1 0.0 10.2 11 0 0 11 11 11 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330509113|ref|YP_004385541.1| - 2.1e-10 40.5 11.5 9.7 7.1 0.1 10.8 12 0 0 12 12 12 0 Tetratricopeptide repeat TPR_15 PF13429.6 gi|330509113|ref|YP_004385541.1| - 7.8e-10 38.4 23.3 0.22 10.7 0.8 6.4 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330509113|ref|YP_004385541.1| - 6e-09 35.5 33.7 0.67 9.9 0.1 10.2 12 0 0 12 12 11 4 Tetratricopeptide repeat SNAP PF14938.6 gi|330509113|ref|YP_004385541.1| - 8.8e-08 31.9 14.6 6.4e-05 22.5 0.7 3.7 3 1 2 5 5 5 3 Soluble NSF attachment protein, SNAP ChAPs PF09295.10 gi|330509113|ref|YP_004385541.1| - 2.2e-06 26.9 1.9 0.4 9.6 0.0 3.6 1 1 1 3 3 3 3 ChAPs (Chs5p-Arf1p-binding proteins) HTH_Bact PF18768.1 gi|330509113|ref|YP_004385541.1| - 5.5e-06 25.9 0.6 0.074 12.7 0.0 5.3 5 1 1 6 6 5 1 Helix-turn-helix bacterial domain TPR_21 PF09976.9 gi|330509113|ref|YP_004385541.1| - 6.2e-06 26.1 18.8 0.36 10.5 2.9 6.1 1 1 2 5 5 5 2 Tetratricopeptide repeat-like domain TPR_MalT PF17874.1 gi|330509113|ref|YP_004385541.1| - 2.9e-05 23.6 8.4 0.0063 15.9 1.4 3.9 2 2 0 2 2 2 2 MalT-like TPR region SRP_TPR_like PF17004.5 gi|330509113|ref|YP_004385541.1| - 4.4e-05 23.5 4.2 1.5 8.9 0.7 4.9 1 1 3 4 4 4 1 Putative TPR-like repeat Coatomer_E PF04733.14 gi|330509113|ref|YP_004385541.1| - 6.1e-05 22.6 11.8 0.67 9.3 0.1 4.3 1 1 3 4 4 4 2 Coatomer epsilon subunit TPR_5 PF12688.7 gi|330509113|ref|YP_004385541.1| - 9.8e-05 22.6 5.9 6.3 7.1 0.0 5.4 3 2 2 5 5 5 0 Tetratrico peptide repeat Fis1_TPR_C PF14853.6 gi|330509113|ref|YP_004385541.1| - 0.00018 21.5 3.3 1.4 9.0 0.0 5.4 6 0 0 6 6 4 1 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.6 gi|330509113|ref|YP_004385541.1| - 0.00036 20.8 16.1 2.6 8.4 0.0 7.3 4 2 4 8 8 8 1 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|330509113|ref|YP_004385541.1| - 0.0012 18.8 7.3 3.1 7.9 0.2 5.8 6 2 1 7 7 5 1 Anaphase-promoting complex subunit 5 TPR_4 PF07721.14 gi|330509113|ref|YP_004385541.1| - 0.002 18.6 17.0 0.59 10.9 0.8 6.5 8 0 0 8 8 6 2 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|330509113|ref|YP_004385541.1| - 0.014 15.1 10.0 1.6 8.4 0.2 4.8 4 1 0 4 4 4 0 Plant specific mitochondrial import receptor subunit TOM20 DUF2225 PF09986.9 gi|330509113|ref|YP_004385541.1| - 0.029 14.1 8.7 0.08 12.6 0.4 3.0 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) DUF3808 PF10300.9 gi|330509113|ref|YP_004385541.1| - 0.087 11.5 4.8 0.44 9.2 0.8 3.1 2 2 2 4 4 4 0 Protein of unknown function (DUF3808) UPF0122 PF04297.14 gi|330509113|ref|YP_004385541.1| - 0.12 12.6 3.1 2.6 8.4 0.7 3.4 4 1 0 4 4 2 0 Putative helix-turn-helix protein, YlxM / p13 like Bin3 PF06859.12 gi|330509113|ref|YP_004385541.1| - 0.14 12.8 0.5 0.59 10.8 0.1 2.3 2 1 1 3 3 1 0 Bicoid-interacting protein 3 (Bin3) Alkyl_sulf_dimr PF14863.6 gi|330509113|ref|YP_004385541.1| - 0.15 12.5 11.9 13 6.3 1.4 4.7 2 2 1 4 4 4 0 Alkyl sulfatase dimerisation PPR PF01535.20 gi|330509113|ref|YP_004385541.1| - 0.42 11.0 10.8 60 4.2 0.0 6.9 10 0 0 10 10 5 0 PPR repeat CCDC-167 PF15188.6 gi|330509113|ref|YP_004385541.1| - 1.1 9.6 9.1 0.88 10.0 0.5 4.1 2 2 1 3 3 3 0 Coiled-coil domain-containing protein 167 Retrotrans_gag PF03732.17 gi|330509113|ref|YP_004385541.1| - 2.7 8.3 6.2 1.1 9.6 0.3 3.2 3 0 0 3 3 3 0 Retrotransposon gag protein DUF1510 PF07423.11 gi|330509113|ref|YP_004385541.1| - 3.5 7.8 15.7 1.7 8.8 0.2 5.6 4 1 3 7 7 6 0 Domain of unknown function (DUF1510) TPR_2 PF07719.17 gi|330509114|ref|YP_004385542.1| - 5.8e-65 210.3 29.2 4.8e-06 26.3 0.0 15.2 15 0 0 15 15 15 12 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509114|ref|YP_004385542.1| - 5.4e-61 197.8 27.9 9.9e-06 25.4 0.1 15.4 15 0 0 15 15 15 11 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330509114|ref|YP_004385542.1| - 8e-60 196.4 18.8 1.2e-07 31.3 0.3 15.3 15 0 0 15 15 15 12 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509114|ref|YP_004385542.1| - 8e-44 147.1 23.3 1.6e-08 34.1 0.1 12.8 9 4 4 13 13 13 8 TPR repeat TPR_16 PF13432.6 gi|330509114|ref|YP_004385542.1| - 3.8e-36 123.5 24.0 8.3e-09 36.0 0.1 10.1 5 3 7 12 12 12 10 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509114|ref|YP_004385542.1| - 1.8e-35 121.0 25.4 1.2e-07 31.9 0.3 10.2 8 2 3 11 11 11 9 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330509114|ref|YP_004385542.1| - 3.4e-32 108.4 26.0 0.016 16.0 0.1 13.8 4 2 10 14 14 14 10 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509114|ref|YP_004385542.1| - 1e-26 91.3 10.8 0.00013 22.1 0.3 10.9 10 1 1 11 11 10 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509114|ref|YP_004385542.1| - 3.1e-26 91.3 9.5 0.0088 16.2 0.3 9.0 6 2 4 10 10 10 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509114|ref|YP_004385542.1| - 1.9e-24 85.9 23.6 4.4e-05 23.9 0.2 9.7 6 3 3 10 10 9 6 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330509114|ref|YP_004385542.1| - 1.1e-17 64.4 21.7 1.9e-08 34.5 0.1 8.6 4 3 2 8 8 8 3 Domain of Unknown Function (DUF3856) TPR_6 PF13174.6 gi|330509114|ref|YP_004385542.1| - 9e-13 48.0 16.0 0.22 12.2 0.0 11.1 14 0 0 14 14 11 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330509114|ref|YP_004385542.1| - 7.8e-12 45.3 10.2 0.0018 18.5 0.1 6.8 4 2 3 7 7 7 3 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.17 gi|330509114|ref|YP_004385542.1| - 1.3e-11 45.1 11.3 0.017 15.5 0.1 8.0 4 4 7 11 11 11 3 Bacterial transcriptional activator domain TPR_7 PF13176.6 gi|330509114|ref|YP_004385542.1| - 4.2e-10 38.9 6.9 0.84 9.8 0.0 10.0 11 0 0 11 11 11 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|330509114|ref|YP_004385542.1| - 1.3e-07 31.2 27.0 0.21 11.5 0.0 10.4 11 0 0 11 11 10 3 Tetratricopeptide repeat LTD PF00932.19 gi|330509114|ref|YP_004385542.1| - 3.1e-06 27.5 0.0 8.2e-06 26.2 0.0 1.8 1 0 0 1 1 1 1 Lamin Tail Domain NARP1 PF12569.8 gi|330509114|ref|YP_004385542.1| - 4.3e-06 25.9 8.4 0.68 8.8 0.0 5.4 5 2 1 6 6 6 3 NMDA receptor-regulated protein 1 PPTA PF01239.22 gi|330509114|ref|YP_004385542.1| - 4.7e-06 26.1 1.0 0.012 15.3 0.0 4.3 4 0 0 4 4 4 1 Protein prenyltransferase alpha subunit repeat SRP_TPR_like PF17004.5 gi|330509114|ref|YP_004385542.1| - 5.3e-06 26.4 1.0 0.025 14.6 0.1 3.6 4 1 0 4 4 2 2 Putative TPR-like repeat TPR_21 PF09976.9 gi|330509114|ref|YP_004385542.1| - 8.7e-06 25.6 17.6 0.0019 18.0 0.0 6.8 4 2 1 7 7 7 1 Tetratricopeptide repeat-like domain Fis1_TPR_C PF14853.6 gi|330509114|ref|YP_004385542.1| - 2.4e-05 24.3 8.6 1.1 9.4 0.0 7.1 7 1 1 8 8 8 1 Fis1 C-terminal tetratricopeptide repeat TPR_MalT PF17874.1 gi|330509114|ref|YP_004385542.1| - 0.00037 20.0 5.4 2.5 7.4 0.4 4.4 2 2 0 4 4 4 1 MalT-like TPR region Alkyl_sulf_dimr PF14863.6 gi|330509114|ref|YP_004385542.1| - 0.0011 19.4 3.8 2.9 8.4 0.0 5.1 3 2 3 6 6 6 1 Alkyl sulfatase dimerisation TPR_20 PF14561.6 gi|330509114|ref|YP_004385542.1| - 0.0035 17.6 16.3 1.8 9.0 0.8 6.6 5 2 2 7 7 6 1 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|330509114|ref|YP_004385542.1| - 0.004 16.9 8.5 1.1 9.0 0.2 4.0 3 1 0 3 3 3 1 Plant specific mitochondrial import receptor subunit TOM20 LemA PF04011.12 gi|330509114|ref|YP_004385542.1| - 0.11 12.4 0.1 0.9 9.4 0.0 2.5 3 0 0 3 3 2 0 LemA family PPR PF01535.20 gi|330509114|ref|YP_004385542.1| - 0.19 12.0 8.7 15 6.1 0.0 6.8 8 0 0 8 8 7 0 PPR repeat FAT PF02259.23 gi|330509114|ref|YP_004385542.1| - 0.66 9.1 10.1 8.2 5.5 0.0 4.9 4 2 1 5 5 5 0 FAT domain TPR_11 PF13414.6 gi|330509115|ref|YP_004385543.1| - 1.9e-86 283.5 43.4 3.6e-08 33.0 0.1 19.9 14 3 5 19 19 19 17 TPR repeat TPR_2 PF07719.17 gi|330509115|ref|YP_004385543.1| - 2.2e-86 277.2 53.6 0.00016 21.5 0.0 21.9 21 1 1 22 22 22 20 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330509115|ref|YP_004385543.1| - 2.4e-86 280.3 45.6 3e-07 30.0 0.0 23.2 24 0 0 24 24 24 17 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509115|ref|YP_004385543.1| - 1e-71 231.2 34.9 2.5e-05 24.1 0.0 21.4 21 0 0 21 21 21 14 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509115|ref|YP_004385543.1| - 3.8e-58 193.9 50.2 5.4e-10 39.8 0.0 14.8 11 3 3 15 15 14 11 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509115|ref|YP_004385543.1| - 3.9e-52 171.0 16.2 0.00095 19.4 0.0 16.4 16 0 0 16 16 15 13 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330509115|ref|YP_004385543.1| - 2e-51 168.2 63.2 0.00041 20.9 0.2 20.0 10 5 10 20 20 20 14 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509115|ref|YP_004385543.1| - 3e-39 133.2 55.6 7.8e-06 26.1 0.3 15.7 6 3 11 17 17 17 12 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509115|ref|YP_004385543.1| - 3.7e-39 133.1 43.5 0.00016 22.1 0.2 14.6 9 5 6 15 15 15 10 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509115|ref|YP_004385543.1| - 4.3e-30 103.7 26.8 0.00023 21.2 1.2 12.7 10 4 2 13 13 13 8 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330509115|ref|YP_004385543.1| - 1.3e-18 65.6 35.7 0.02 14.9 0.1 15.7 17 0 0 17 17 14 5 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330509115|ref|YP_004385543.1| - 6.4e-18 65.2 33.1 0.0011 19.0 1.1 10.5 2 2 5 10 10 10 6 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|330509115|ref|YP_004385543.1| - 3.7e-17 62.4 6.2 0.035 13.0 0.1 9.4 4 3 5 9 9 9 4 NMDA receptor-regulated protein 1 TPR_6 PF13174.6 gi|330509115|ref|YP_004385543.1| - 9.4e-16 57.3 39.7 0.47 11.2 0.0 17.9 20 0 0 20 20 19 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330509115|ref|YP_004385543.1| - 3.5e-14 52.8 16.7 0.01 16.1 0.0 9.0 10 1 1 11 11 9 3 Anaphase-promoting complex, cyclosome, subunit 3 LTD PF00932.19 gi|330509115|ref|YP_004385543.1| - 2.4e-10 40.7 0.5 2.5e-09 37.5 0.1 2.6 2 0 0 2 2 2 1 Lamin Tail Domain TPR_10 PF13374.6 gi|330509115|ref|YP_004385543.1| - 3.4e-09 36.3 68.0 0.12 12.3 0.4 18.9 21 0 0 21 21 21 3 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|330509115|ref|YP_004385543.1| - 4.3e-08 33.1 6.5 0.2 11.4 0.1 6.4 4 1 2 7 7 7 2 Plant specific mitochondrial import receptor subunit TOM20 BTAD PF03704.17 gi|330509115|ref|YP_004385543.1| - 1.4e-06 28.8 35.2 0.0066 16.9 0.4 8.9 4 3 2 8 8 8 3 Bacterial transcriptional activator domain ANAPC5 PF12862.7 gi|330509115|ref|YP_004385543.1| - 2.6e-06 27.4 1.4 0.54 10.4 0.0 6.8 6 1 1 7 7 5 1 Anaphase-promoting complex subunit 5 Fis1_TPR_C PF14853.6 gi|330509115|ref|YP_004385543.1| - 4.6e-06 26.6 14.7 22 5.2 0.1 10.3 13 0 0 13 13 12 0 Fis1 C-terminal tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|330509115|ref|YP_004385543.1| - 1.4e-05 25.6 16.1 0.01 16.3 0.1 6.7 5 2 1 7 7 7 2 Alkyl sulfatase dimerisation SNAP PF14938.6 gi|330509115|ref|YP_004385543.1| - 4e-05 23.2 30.7 0.39 10.1 0.4 7.7 2 2 3 7 7 7 3 Soluble NSF attachment protein, SNAP HTH_Bact PF18768.1 gi|330509115|ref|YP_004385543.1| - 0.00018 21.0 8.8 14 5.3 0.0 8.5 9 1 0 9 9 8 0 Helix-turn-helix bacterial domain PPTA PF01239.22 gi|330509115|ref|YP_004385543.1| - 0.0011 18.6 0.6 3 7.7 0.0 4.1 4 0 0 4 4 3 1 Protein prenyltransferase alpha subunit repeat YfdX PF10938.8 gi|330509115|ref|YP_004385543.1| - 0.0022 17.9 1.9 1.3 9.0 0.1 4.0 2 1 0 3 3 3 1 YfdX protein TPR_20 PF14561.6 gi|330509115|ref|YP_004385543.1| - 0.0029 17.9 11.0 3.7 8.0 0.0 6.0 5 3 2 7 7 5 1 Tetratricopeptide repeat DUF1510 PF07423.11 gi|330509115|ref|YP_004385543.1| - 0.018 15.2 14.5 1.3 9.3 0.0 7.8 8 2 1 9 9 8 0 Domain of unknown function (DUF1510) MCC-bdg_PDZ PF10506.9 gi|330509115|ref|YP_004385543.1| - 0.026 14.5 0.1 1.1e+02 2.9 0.0 5.5 6 0 0 6 6 5 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Sel1 PF08238.12 gi|330509115|ref|YP_004385543.1| - 0.058 14.1 2.7 22 5.9 0.1 3.9 3 0 0 3 3 2 0 Sel1 repeat TPR_3 PF07720.12 gi|330509115|ref|YP_004385543.1| - 0.078 13.0 3.7 2.1 8.5 0.0 5.3 7 0 0 7 7 6 0 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|330509115|ref|YP_004385543.1| - 0.14 11.7 6.0 1e+02 2.5 0.0 6.1 5 0 0 5 5 5 0 SHNi-TPR TPR_5 PF12688.7 gi|330509115|ref|YP_004385543.1| - 0.22 11.8 11.8 6.5 7.0 0.5 5.3 4 1 1 5 5 5 0 Tetratrico peptide repeat DUF5113 PF17140.4 gi|330509115|ref|YP_004385543.1| - 0.62 9.9 6.9 19 5.0 0.1 6.4 7 3 1 9 9 8 0 Domain of unknown function (DUF5113) TPR_1 PF00515.28 gi|330509117|ref|YP_004385545.1| - 1.8e-25 87.7 11.0 1e-06 28.3 0.0 6.4 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509117|ref|YP_004385545.1| - 7.4e-25 85.1 13.5 1.1e-05 25.3 0.0 6.6 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330509117|ref|YP_004385545.1| - 2.4e-23 80.3 8.5 7.6e-06 25.7 0.0 7.0 6 1 1 7 7 6 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509117|ref|YP_004385545.1| - 4.8e-23 80.6 9.7 6.6e-07 28.9 0.1 6.0 4 1 2 6 6 6 4 TPR repeat TPR_17 PF13431.6 gi|330509117|ref|YP_004385545.1| - 1.9e-19 68.6 3.7 0.00028 21.1 0.0 6.7 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330509117|ref|YP_004385545.1| - 1.8e-17 62.5 0.1 0.0033 18.1 0.0 6.2 4 3 3 7 7 6 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509117|ref|YP_004385545.1| - 2.1e-17 63.5 0.0 3.7e-05 24.3 0.5 4.7 3 1 1 5 5 4 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509117|ref|YP_004385545.1| - 2.6e-12 46.8 6.5 0.0027 18.0 0.1 5.3 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509117|ref|YP_004385545.1| - 1.1e-11 45.1 4.4 0.013 16.0 0.0 5.3 3 1 1 5 5 5 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330509117|ref|YP_004385545.1| - 1.1e-09 38.3 3.5 3.3e-05 24.0 0.0 3.6 3 1 1 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|330509117|ref|YP_004385545.1| - 1.8e-07 31.2 0.0 0.01 15.9 0.0 4.3 4 1 2 6 6 6 2 Tetratricopeptide repeat PPTA PF01239.22 gi|330509117|ref|YP_004385545.1| - 8.1e-07 28.6 6.8 0.21 11.4 0.0 4.3 4 0 0 4 4 4 3 Protein prenyltransferase alpha subunit repeat TPR_6 PF13174.6 gi|330509117|ref|YP_004385545.1| - 8.6e-07 29.2 5.1 25 5.8 0.0 6.3 6 0 0 6 6 6 0 Tetratricopeptide repeat NARP1 PF12569.8 gi|330509117|ref|YP_004385545.1| - 1.6e-06 27.4 3.8 0.0098 14.8 0.1 3.2 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 DUF3856 PF12968.7 gi|330509117|ref|YP_004385545.1| - 3.3e-05 24.0 0.4 7.6 6.6 0.0 4.7 3 1 2 5 5 5 0 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|330509117|ref|YP_004385545.1| - 0.00015 22.2 0.1 0.097 13.1 0.0 3.4 3 1 1 4 4 3 1 Bacterial transcriptional activator domain Fis1_TPR_C PF14853.6 gi|330509117|ref|YP_004385545.1| - 0.00025 21.1 0.2 1.5 9.0 0.0 4.0 3 1 1 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat DUF4919 PF16266.5 gi|330509117|ref|YP_004385545.1| - 0.0004 20.4 0.9 0.001 19.0 0.3 1.9 1 1 0 2 2 2 1 Domain of unknown function (DUF4919) TPR_10 PF13374.6 gi|330509117|ref|YP_004385545.1| - 0.00055 19.7 7.8 0.55 10.2 0.0 5.4 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|330509117|ref|YP_004385545.1| - 0.00081 19.7 4.9 0.85 10.0 0.7 3.9 4 1 1 5 5 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330509117|ref|YP_004385545.1| - 0.0014 18.5 4.7 4.2 7.6 0.0 6.0 7 1 0 7 7 6 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|330509117|ref|YP_004385545.1| - 0.0016 18.9 0.4 1.4 9.4 0.0 3.8 1 1 2 4 4 4 1 Alkyl sulfatase dimerisation DUF627 PF04781.12 gi|330509117|ref|YP_004385545.1| - 0.0039 17.2 0.4 2.5 8.1 0.0 3.4 4 0 0 4 4 3 1 Protein of unknown function (DUF627) DUF1510 PF07423.11 gi|330509117|ref|YP_004385545.1| - 0.019 15.1 2.5 14 5.9 0.0 4.1 4 1 1 5 5 5 0 Domain of unknown function (DUF1510) TPR_21 PF09976.9 gi|330509117|ref|YP_004385545.1| - 0.039 13.7 4.2 0.55 9.9 0.2 3.2 2 1 0 3 3 3 0 Tetratricopeptide repeat-like domain DUF2225 PF09986.9 gi|330509117|ref|YP_004385545.1| - 0.24 11.1 4.0 0.38 10.4 0.1 2.7 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_1 PF00515.28 gi|330509118|ref|YP_004385546.1| - 2e-58 192.0 16.7 1.4e-07 31.1 0.0 11.2 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330509118|ref|YP_004385546.1| - 3.3e-57 186.1 23.6 1.2e-07 31.3 0.1 12.2 12 1 1 13 13 13 8 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509118|ref|YP_004385546.1| - 5.8e-47 154.0 15.6 4e-05 23.5 0.0 10.7 11 0 0 11 11 10 9 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509118|ref|YP_004385546.1| - 4.3e-38 129.4 22.5 2.1e-11 43.9 0.1 7.6 5 3 3 8 8 7 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509118|ref|YP_004385546.1| - 1.3e-37 127.2 25.1 1.1e-07 31.4 0.1 10.4 8 2 2 10 10 10 6 TPR repeat TPR_14 PF13428.6 gi|330509118|ref|YP_004385546.1| - 1.3e-34 115.9 25.5 3.7e-05 24.2 0.2 10.9 5 4 6 11 11 10 8 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509118|ref|YP_004385546.1| - 1.6e-32 111.8 21.1 1.2e-05 25.9 0.5 8.3 3 2 7 10 10 10 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509118|ref|YP_004385546.1| - 8.7e-31 106.3 29.8 3.2e-06 27.6 1.4 7.9 2 1 8 10 10 10 10 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509118|ref|YP_004385546.1| - 2.1e-28 96.6 10.4 0.001 19.3 0.1 9.9 9 0 0 9 9 9 7 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330509118|ref|YP_004385546.1| - 1.8e-19 69.8 12.3 0.00012 22.2 0.2 5.7 3 3 2 5 5 5 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|330509118|ref|YP_004385546.1| - 1.6e-18 66.6 9.8 0.00066 19.8 0.2 6.9 4 3 2 6 6 6 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330509118|ref|YP_004385546.1| - 1.6e-17 62.9 18.5 0.0066 17.0 0.1 10.5 11 0 0 11 11 10 4 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330509118|ref|YP_004385546.1| - 1.8e-16 60.5 12.6 5.2e-05 23.3 0.3 6.8 2 2 3 6 6 6 3 Domain of Unknown Function (DUF3856) TPR_10 PF13374.6 gi|330509118|ref|YP_004385546.1| - 2e-15 56.1 21.9 0.0021 17.8 0.1 9.2 10 0 0 10 10 9 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330509118|ref|YP_004385546.1| - 1.3e-10 40.5 15.7 0.11 12.6 0.0 8.7 9 1 0 9 9 8 3 Tetratricopeptide repeat TPR_15 PF13429.6 gi|330509118|ref|YP_004385546.1| - 2.1e-08 33.7 19.9 0.009 15.3 0.9 4.1 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_4 PF07721.14 gi|330509118|ref|YP_004385546.1| - 1.4e-07 31.5 17.4 0.12 13.0 0.2 7.7 10 0 0 10 10 6 3 Tetratricopeptide repeat TPR_21 PF09976.9 gi|330509118|ref|YP_004385546.1| - 2.3e-07 30.7 21.9 0.015 15.0 0.1 6.6 2 2 3 6 6 6 2 Tetratricopeptide repeat-like domain BTAD PF03704.17 gi|330509118|ref|YP_004385546.1| - 9e-07 29.4 17.5 0.6 10.5 0.0 6.6 2 1 4 6 6 6 3 Bacterial transcriptional activator domain TPR_MalT PF17874.1 gi|330509118|ref|YP_004385546.1| - 3.5e-06 26.7 4.0 6.7e-05 22.4 0.5 3.1 2 1 0 2 2 2 1 MalT-like TPR region NARP1 PF12569.8 gi|330509118|ref|YP_004385546.1| - 5.2e-06 25.7 15.1 0.49 9.2 0.0 6.1 3 2 1 6 6 6 3 NMDA receptor-regulated protein 1 TPR_3 PF07720.12 gi|330509118|ref|YP_004385546.1| - 3e-05 23.9 1.5 0.16 12.0 0.1 5.5 6 0 0 6 6 6 1 Tetratricopeptide repeat FAT PF02259.23 gi|330509118|ref|YP_004385546.1| - 3.3e-05 23.3 8.5 0.11 11.6 0.9 3.6 1 1 1 3 3 3 2 FAT domain PPTA PF01239.22 gi|330509118|ref|YP_004385546.1| - 0.00013 21.5 0.0 8.3 6.3 0.0 4.9 4 0 0 4 4 4 0 Protein prenyltransferase alpha subunit repeat Fis1_TPR_C PF14853.6 gi|330509118|ref|YP_004385546.1| - 0.00015 21.8 13.6 0.026 14.6 0.1 7.4 9 1 1 10 10 9 1 Fis1 C-terminal tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|330509118|ref|YP_004385546.1| - 0.00016 21.7 5.4 0.39 10.6 0.2 5.5 3 2 2 5 5 5 1 Virulence factor membrane-bound polymerase, C-terminal Coatomer_E PF04733.14 gi|330509118|ref|YP_004385546.1| - 0.0004 19.9 14.4 0.62 9.4 1.2 5.2 3 2 3 6 6 6 2 Coatomer epsilon subunit MAS20 PF02064.15 gi|330509118|ref|YP_004385546.1| - 0.0043 17.1 2.7 0.26 11.4 0.3 3.4 4 0 0 4 4 3 1 MAS20 protein import receptor ChAPs PF09295.10 gi|330509118|ref|YP_004385546.1| - 0.029 13.4 1.9 9.6 5.1 0.1 3.3 3 1 0 3 3 3 0 ChAPs (Chs5p-Arf1p-binding proteins) Alkyl_sulf_dimr PF14863.6 gi|330509118|ref|YP_004385546.1| - 0.039 14.4 11.5 22 5.5 0.3 5.5 3 2 3 6 6 6 0 Alkyl sulfatase dimerisation DUF3775 PF12616.8 gi|330509118|ref|YP_004385546.1| - 0.049 13.7 4.4 3.1 7.9 0.0 4.9 6 1 1 7 7 4 0 Protein of unknown function (DUF3775) DUF5388 PF17363.2 gi|330509118|ref|YP_004385546.1| - 0.077 13.2 3.4 17 5.7 0.0 4.6 5 1 1 6 6 4 0 Family of unknown function (DUF5388) HTH_Bact PF18768.1 gi|330509118|ref|YP_004385546.1| - 0.11 12.1 5.5 28 4.4 0.0 5.6 6 0 0 6 6 6 0 Helix-turn-helix bacterial domain TOM20_plant PF06552.12 gi|330509118|ref|YP_004385546.1| - 0.14 11.9 8.4 24 4.6 0.1 4.5 3 2 2 5 5 4 0 Plant specific mitochondrial import receptor subunit TOM20 MIT PF04212.18 gi|330509118|ref|YP_004385546.1| - 0.36 10.9 19.8 16 5.7 0.2 7.6 7 2 2 9 9 8 0 MIT (microtubule interacting and transport) domain DUF2225 PF09986.9 gi|330509118|ref|YP_004385546.1| - 0.51 10.0 4.7 1.3 8.7 0.6 3.0 2 2 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_20 PF14561.6 gi|330509118|ref|YP_004385546.1| - 1.1 9.7 16.4 1.3 9.4 1.0 5.5 4 2 3 7 7 7 0 Tetratricopeptide repeat GldM_N PF12081.8 gi|330509118|ref|YP_004385546.1| - 1.9 8.5 9.3 15 5.6 0.1 4.1 3 2 1 4 4 4 0 GldM N-terminal domain Plasmod_dom_1 PF09715.10 gi|330509119|ref|YP_004385547.1| - 0.22 11.6 0.6 0.43 10.7 0.6 1.6 1 1 0 1 1 1 0 Plasmodium protein of unknown function (Plasmod_dom_1) TPR_1 PF00515.28 gi|330509120|ref|YP_004385548.1| - 1.7e-60 198.5 20.3 3.1e-10 39.4 0.0 11.0 11 0 0 11 11 11 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330509120|ref|YP_004385548.1| - 1.3e-52 171.7 18.5 1.9e-09 36.9 0.1 10.6 11 0 0 11 11 10 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509120|ref|YP_004385548.1| - 3.7e-45 151.3 29.1 7.4e-12 44.8 0.4 9.7 7 2 3 10 10 10 7 TPR repeat TPR_8 PF13181.6 gi|330509120|ref|YP_004385548.1| - 9.3e-42 137.8 17.7 2.8e-07 30.2 0.0 9.7 9 1 1 10 10 10 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509120|ref|YP_004385548.1| - 9e-36 122.3 2.5 4e-13 49.8 0.0 7.4 4 2 4 8 8 8 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330509120|ref|YP_004385548.1| - 2.9e-30 102.3 8.3 6.6e-05 23.4 0.0 9.4 4 2 5 9 9 9 7 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509120|ref|YP_004385548.1| - 2.1e-29 99.8 13.4 8.3e-06 25.8 0.0 10.4 10 1 0 10 10 9 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509120|ref|YP_004385548.1| - 3.1e-28 97.9 16.5 6.7e-08 32.7 0.0 8.0 3 2 4 8 8 8 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509120|ref|YP_004385548.1| - 1.6e-26 92.6 5.2 1.6e-06 28.5 0.1 5.7 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509120|ref|YP_004385548.1| - 2.9e-22 78.6 0.0 9.1e-07 28.9 0.0 5.0 3 1 2 5 5 5 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330509120|ref|YP_004385548.1| - 1.1e-16 60.8 0.8 0.00091 19.4 0.0 5.7 3 2 2 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.7 gi|330509120|ref|YP_004385548.1| - 4.3e-15 56.0 13.0 0.0071 16.4 0.3 6.4 3 3 3 6 6 6 4 Domain of Unknown Function (DUF3856) TPR_10 PF13374.6 gi|330509120|ref|YP_004385548.1| - 1.5e-14 53.3 17.5 0.0048 16.7 0.1 8.2 9 0 0 9 9 8 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330509120|ref|YP_004385548.1| - 2.3e-14 52.3 3.5 0.05 13.7 0.0 7.9 7 1 1 8 8 8 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330509120|ref|YP_004385548.1| - 1e-13 50.9 12.3 0.43 11.3 0.0 8.3 9 0 0 9 9 8 3 Tetratricopeptide repeat TPR_3 PF07720.12 gi|330509120|ref|YP_004385548.1| - 2e-08 34.0 4.3 0.53 10.3 0.0 6.1 6 0 0 6 6 6 2 Tetratricopeptide repeat BTAD PF03704.17 gi|330509120|ref|YP_004385548.1| - 1.7e-07 31.8 5.5 0.0027 18.1 0.0 4.9 4 1 1 5 5 5 1 Bacterial transcriptional activator domain MIT PF04212.18 gi|330509120|ref|YP_004385548.1| - 6.2e-07 29.4 21.2 1.2 9.2 0.1 7.6 7 1 1 8 8 8 3 MIT (microtubule interacting and transport) domain NRBF2_MIT PF17169.4 gi|330509120|ref|YP_004385548.1| - 2e-06 27.9 0.2 10 6.4 0.0 6.0 6 0 0 6 6 6 0 MIT domain of nuclear receptor-binding factor 2 NARP1 PF12569.8 gi|330509120|ref|YP_004385548.1| - 3.4e-06 26.3 1.7 1.2 7.9 0.0 3.9 1 1 2 4 4 4 4 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|330509120|ref|YP_004385548.1| - 4.2e-06 26.8 3.4 0.31 11.1 0.1 4.1 4 1 1 5 5 3 2 Putative TPR-like repeat SHNi-TPR PF10516.9 gi|330509120|ref|YP_004385548.1| - 6.8e-06 25.4 5.0 0.93 9.0 0.0 5.8 7 0 0 7 7 6 2 SHNi-TPR Fis1_TPR_C PF14853.6 gi|330509120|ref|YP_004385548.1| - 1.5e-05 25.0 5.5 3.4 7.8 0.0 6.1 5 1 1 6 6 6 1 Fis1 C-terminal tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|330509120|ref|YP_004385548.1| - 8.3e-05 23.1 2.8 0.14 12.6 0.1 4.7 3 2 2 5 5 5 1 Alkyl sulfatase dimerisation DUF3808 PF10300.9 gi|330509120|ref|YP_004385548.1| - 0.00075 18.3 0.3 0.0061 15.3 0.1 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF3808) TPR_20 PF14561.6 gi|330509120|ref|YP_004385548.1| - 0.0017 18.7 0.7 9.5 6.6 0.0 4.2 3 2 2 5 5 4 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|330509120|ref|YP_004385548.1| - 0.0026 17.5 13.7 1.3 8.7 0.1 6.5 3 2 3 7 7 7 1 Tetratricopeptide repeat-like domain PPR PF01535.20 gi|330509120|ref|YP_004385548.1| - 0.004 17.3 1.4 47 4.5 0.0 5.9 6 0 0 6 6 5 0 PPR repeat TOM20_plant PF06552.12 gi|330509120|ref|YP_004385548.1| - 0.0096 15.7 4.2 0.43 10.3 0.1 3.3 3 1 1 4 4 4 1 Plant specific mitochondrial import receptor subunit TOM20 DUF2225 PF09986.9 gi|330509120|ref|YP_004385548.1| - 0.012 15.4 6.4 0.16 11.6 0.3 3.8 2 2 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) Coatomer_E PF04733.14 gi|330509120|ref|YP_004385548.1| - 0.055 12.9 0.3 1.9 7.8 0.1 3.3 3 1 0 3 3 3 0 Coatomer epsilon subunit UFC1 PF08694.11 gi|330509120|ref|YP_004385548.1| - 0.063 12.9 2.0 4.6 6.9 0.0 3.3 4 1 0 4 4 3 0 Ubiquitin-fold modifier-conjugating enzyme 1 ANAPC5 PF12862.7 gi|330509120|ref|YP_004385548.1| - 0.071 13.2 0.7 58 3.9 0.0 4.6 5 0 0 5 5 4 0 Anaphase-promoting complex subunit 5 HTH_Bact PF18768.1 gi|330509120|ref|YP_004385548.1| - 0.18 11.4 13.6 18 5.0 0.1 6.5 7 1 1 8 8 7 0 Helix-turn-helix bacterial domain NRDE-2 PF08424.10 gi|330509120|ref|YP_004385548.1| - 1.6 7.8 7.6 0.45 9.6 1.6 2.7 2 2 1 3 3 3 0 NRDE-2, necessary for RNA interference DDE_Tnp_1 PF01609.21 gi|330509121|ref|YP_004385549.1| - 0.02 14.5 0.1 0.023 14.4 0.1 1.2 1 0 0 1 1 1 0 Transposase DDE domain AT_hook PF02178.19 gi|330509122|ref|YP_004385550.1| - 0.16 12.0 4.1 0.23 11.4 4.1 1.3 1 0 0 1 1 1 0 AT hook motif DDE_Tnp_1 PF01609.21 gi|330509123|ref|YP_004385551.1| - 2.8e-06 27.2 0.1 2.9e-06 27.1 0.1 1.0 1 0 0 1 1 1 1 Transposase DDE domain DUF3511 PF12023.8 gi|330509123|ref|YP_004385551.1| - 0.018 14.9 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3511) IstB_IS21 PF01695.17 gi|330509124|ref|YP_004385552.1| - 4.7e-05 23.2 0.5 5.4e-05 23.0 0.5 1.1 1 0 0 1 1 1 1 IstB-like ATP binding protein IstB_IS21 PF01695.17 gi|330509125|ref|YP_004385553.1| - 1.7e-05 24.6 0.1 3.9e-05 23.5 0.0 1.6 2 0 0 2 2 2 1 IstB-like ATP binding protein rve PF00665.26 gi|330509126|ref|YP_004385554.1| - 1.4e-26 93.0 0.0 2.3e-26 92.3 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|330509126|ref|YP_004385554.1| - 1.6e-05 24.6 0.0 8.1e-05 22.3 0.0 2.2 2 1 1 3 3 3 1 Integrase core domain HTH_29 PF13551.6 gi|330509126|ref|YP_004385554.1| - 0.0013 18.7 0.1 0.031 14.3 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn helix HTH_7 PF02796.15 gi|330509126|ref|YP_004385554.1| - 0.0042 17.1 0.0 0.013 15.6 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase TnsD PF15978.5 gi|330509126|ref|YP_004385554.1| - 0.0057 15.7 0.0 0.0085 15.1 0.0 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D Sigma70_r4_2 PF08281.12 gi|330509126|ref|YP_004385554.1| - 0.006 16.2 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.10 gi|330509126|ref|YP_004385554.1| - 0.0078 16.0 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 gi|330509126|ref|YP_004385554.1| - 0.014 14.9 0.1 0.035 13.6 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|330509126|ref|YP_004385554.1| - 0.015 15.3 0.1 0.045 13.7 0.1 1.8 1 0 0 1 1 1 0 HTH domain HTH_Mga PF08280.11 gi|330509126|ref|YP_004385554.1| - 0.032 14.3 0.0 0.11 12.6 0.0 1.9 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_3 PF01381.22 gi|330509126|ref|YP_004385554.1| - 0.04 14.0 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_40 PF14493.6 gi|330509126|ref|YP_004385554.1| - 0.077 13.5 0.0 0.24 11.9 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|330509126|ref|YP_004385554.1| - 0.078 12.6 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|330509126|ref|YP_004385554.1| - 0.094 12.5 0.2 0.31 10.9 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GcrA PF07750.11 gi|330509126|ref|YP_004385554.1| - 0.098 13.1 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 GcrA cell cycle regulator DUF2089 PF09862.9 gi|330509126|ref|YP_004385554.1| - 0.14 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Radical_SAM PF04055.21 gi|330509127|ref|YP_004385555.1| - 8.6e-07 29.5 0.1 1.4e-06 28.8 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330509127|ref|YP_004385555.1| - 0.0043 17.3 1.3 0.011 15.9 0.5 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|330509128|ref|YP_004385556.1| - 7.9e-12 45.9 0.1 1.5e-11 44.9 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330509128|ref|YP_004385556.1| - 6.8e-11 42.6 0.1 3.5e-10 40.3 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330509128|ref|YP_004385556.1| - 2.8e-05 24.2 0.0 2.8e-05 24.2 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S single cluster domain DUF3116 PF11313.8 gi|330509128|ref|YP_004385556.1| - 0.11 12.3 0.4 8.8 6.3 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3116) SPASM PF13186.6 gi|330509128|ref|YP_004385556.1| - 0.17 12.4 4.7 0.49 11.0 4.7 1.9 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain ABC_tran PF00005.27 gi|330509129|ref|YP_004385557.1| - 2.8e-34 118.6 0.0 4.9e-34 117.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330509129|ref|YP_004385557.1| - 6.9e-08 32.6 0.0 0.0042 16.9 0.0 2.6 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_membrane PF00664.23 gi|330509129|ref|YP_004385557.1| - 2.2e-05 24.2 9.3 5e-05 23.1 1.8 2.3 2 0 0 2 2 2 1 ABC transporter transmembrane region AAA_15 PF13175.6 gi|330509129|ref|YP_004385557.1| - 2.3e-05 24.3 0.0 0.0017 18.2 0.0 2.6 3 0 0 3 3 3 1 AAA ATPase domain SMC_N PF02463.19 gi|330509129|ref|YP_004385557.1| - 0.00018 21.0 0.4 0.28 10.6 0.0 2.3 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|330509129|ref|YP_004385557.1| - 0.0032 17.2 0.0 0.0068 16.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|330509129|ref|YP_004385557.1| - 0.0073 15.9 0.1 0.014 15.0 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|330509129|ref|YP_004385557.1| - 0.0078 16.0 0.1 0.027 14.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|330509129|ref|YP_004385557.1| - 0.011 16.3 0.0 0.02 15.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|330509129|ref|YP_004385557.1| - 0.014 14.7 0.0 0.026 13.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 gi|330509129|ref|YP_004385557.1| - 0.019 15.3 0.1 0.042 14.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|330509129|ref|YP_004385557.1| - 0.022 15.2 0.0 0.056 13.9 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|330509129|ref|YP_004385557.1| - 0.027 13.1 0.0 1.8 7.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|330509129|ref|YP_004385557.1| - 0.027 15.0 0.0 0.067 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|330509129|ref|YP_004385557.1| - 0.035 14.4 0.0 0.13 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|330509129|ref|YP_004385557.1| - 0.036 14.1 0.0 0.12 12.4 0.0 1.9 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DLIC PF05783.11 gi|330509129|ref|YP_004385557.1| - 0.038 12.8 0.0 0.057 12.2 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_28 PF13521.6 gi|330509129|ref|YP_004385557.1| - 0.089 13.0 0.1 0.19 11.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|330509129|ref|YP_004385557.1| - 0.11 12.9 0.1 0.28 11.5 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|330509129|ref|YP_004385557.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|330509129|ref|YP_004385557.1| - 0.16 11.9 0.1 0.35 10.8 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase NTPase_1 PF03266.15 gi|330509129|ref|YP_004385557.1| - 0.17 11.8 0.0 0.7 9.8 0.0 1.9 2 0 0 2 2 2 0 NTPase G-alpha PF00503.20 gi|330509129|ref|YP_004385557.1| - 0.2 10.8 0.0 0.37 9.9 0.0 1.5 2 0 0 2 2 2 0 G-protein alpha subunit PduV-EutP PF10662.9 gi|330509129|ref|YP_004385557.1| - 0.77 9.5 2.4 9.1 6.0 0.2 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation TrmB PF01978.19 gi|330509130|ref|YP_004385558.1| - 5.8e-07 29.3 0.0 1e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|330509130|ref|YP_004385558.1| - 3.5e-05 23.8 0.0 6.7e-05 22.9 0.0 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|330509130|ref|YP_004385558.1| - 5.2e-05 23.0 1.4 6e-05 22.8 0.7 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|330509130|ref|YP_004385558.1| - 6.4e-05 23.4 0.0 0.00011 22.6 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|330509130|ref|YP_004385558.1| - 0.0002 21.1 0.4 0.0005 19.8 0.1 1.9 2 1 0 2 2 2 1 Winged helix DNA-binding domain (DUF1495) HTH_IclR PF09339.10 gi|330509130|ref|YP_004385558.1| - 0.0014 18.4 0.1 0.0029 17.4 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain PadR PF03551.14 gi|330509130|ref|YP_004385558.1| - 0.0072 16.3 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|330509130|ref|YP_004385558.1| - 0.0079 16.2 1.4 0.012 15.6 1.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|330509130|ref|YP_004385558.1| - 0.017 14.9 0.2 0.025 14.3 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) Replic_Relax PF13814.6 gi|330509130|ref|YP_004385558.1| - 0.1 12.6 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DivIC PF04977.15 gi|330509131|ref|YP_004385559.1| - 0.0014 18.4 1.3 0.012 15.4 0.1 2.4 2 0 0 2 2 2 1 Septum formation initiator bZIP_2 PF07716.15 gi|330509131|ref|YP_004385559.1| - 0.011 15.8 2.9 0.011 15.8 2.9 2.2 2 0 0 2 2 2 0 Basic region leucine zipper DUF677 PF05055.12 gi|330509131|ref|YP_004385559.1| - 0.067 12.1 0.1 0.079 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Latarcin PF10279.9 gi|330509131|ref|YP_004385559.1| - 0.11 12.9 0.7 1.9 9.0 0.0 2.5 3 0 0 3 3 3 0 Latarcin precursor Mod_r PF07200.13 gi|330509131|ref|YP_004385559.1| - 0.18 11.9 2.5 0.97 9.5 2.5 2.0 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein PspB PF06667.12 gi|330509131|ref|YP_004385559.1| - 0.85 9.7 3.5 4 7.6 1.1 2.4 2 0 0 2 2 2 0 Phage shock protein B ADIP PF11559.8 gi|330509131|ref|YP_004385559.1| - 2 8.5 8.3 0.68 10.0 5.0 1.9 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding NYD-SP28_assoc PF14775.6 gi|330509131|ref|YP_004385559.1| - 6.7 6.9 6.3 3.9 7.7 0.8 2.9 3 0 0 3 3 3 0 Sperm tail C-terminal domain HTH_Tnp_1 PF01527.20 gi|330509132|ref|YP_004385560.1| - 0.043 14.1 0.0 0.066 13.5 0.0 1.4 1 1 0 1 1 1 0 Transposase TPR_1 PF00515.28 gi|330509134|ref|YP_004385562.1| - 8.2e-22 76.1 1.0 7.6e-08 31.9 0.1 5.8 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330509134|ref|YP_004385562.1| - 2.7e-16 58.3 5.4 7e-07 28.9 0.1 5.8 6 1 1 7 7 6 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509134|ref|YP_004385562.1| - 2e-14 52.5 8.8 6.8e-05 22.8 0.2 5.3 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509134|ref|YP_004385562.1| - 7.2e-14 51.2 8.9 5.1e-05 22.9 1.5 6.7 5 1 1 6 6 6 2 TPR repeat TPR_14 PF13428.6 gi|330509134|ref|YP_004385562.1| - 7e-12 45.1 0.4 3.4e-05 24.3 0.2 4.6 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509134|ref|YP_004385562.1| - 7.1e-12 44.8 3.7 0.0018 18.5 0.0 5.1 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509134|ref|YP_004385562.1| - 1.4e-11 44.5 1.3 2.2e-07 31.1 0.2 3.4 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330509134|ref|YP_004385562.1| - 9.6e-09 35.8 1.1 1.3e-05 25.8 0.2 3.9 1 1 2 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509134|ref|YP_004385562.1| - 4.1e-07 30.0 0.0 0.022 14.9 0.0 3.5 1 1 2 3 3 3 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330509134|ref|YP_004385562.1| - 5.5e-07 29.7 0.6 0.0017 18.4 0.1 3.3 2 1 1 3 3 3 2 Domain of Unknown Function (DUF3856) TPR_10 PF13374.6 gi|330509134|ref|YP_004385562.1| - 1.2e-06 28.1 0.1 0.00096 18.9 0.0 2.8 2 0 0 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|330509134|ref|YP_004385562.1| - 1.9e-06 27.1 0.9 0.0034 16.4 0.3 2.2 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_6 PF13174.6 gi|330509134|ref|YP_004385562.1| - 3.1e-05 24.3 0.3 0.76 10.5 0.1 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat PPTA PF01239.22 gi|330509134|ref|YP_004385562.1| - 6.8e-05 22.5 2.7 0.54 10.1 0.0 3.4 3 0 0 3 3 3 2 Protein prenyltransferase alpha subunit repeat MIT PF04212.18 gi|330509134|ref|YP_004385562.1| - 6.9e-05 22.8 2.2 0.11 12.6 0.2 3.7 2 1 2 4 4 4 2 MIT (microtubule interacting and transport) domain ANAPC3 PF12895.7 gi|330509134|ref|YP_004385562.1| - 0.00012 22.2 0.4 0.15 12.3 0.0 2.8 2 1 1 3 3 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 gi|330509134|ref|YP_004385562.1| - 0.00044 20.7 5.9 0.021 15.3 0.2 3.6 2 1 2 4 4 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330509134|ref|YP_004385562.1| - 0.0018 18.2 0.2 0.035 14.1 0.0 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat BTAD PF03704.17 gi|330509134|ref|YP_004385562.1| - 0.0018 18.7 0.0 0.0051 17.2 0.0 1.7 1 1 1 2 2 2 1 Bacterial transcriptional activator domain Alkyl_sulf_dimr PF14863.6 gi|330509134|ref|YP_004385562.1| - 0.0073 16.8 0.2 1.2 9.6 0.1 2.5 1 1 1 2 2 2 1 Alkyl sulfatase dimerisation Fis1_TPR_C PF14853.6 gi|330509134|ref|YP_004385562.1| - 0.051 13.6 0.2 3.3 7.8 0.0 3.2 2 1 1 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat HTH_Bact PF18768.1 gi|330509134|ref|YP_004385562.1| - 0.12 11.9 0.3 1.5 8.4 0.2 2.8 3 0 0 3 3 3 0 Helix-turn-helix bacterial domain DUF627 PF04781.12 gi|330509134|ref|YP_004385562.1| - 0.14 12.2 0.6 23 5.0 0.1 3.3 2 1 2 4 4 4 0 Protein of unknown function (DUF627) SNAP PF14938.6 gi|330509134|ref|YP_004385562.1| - 0.65 9.4 4.9 0.57 9.6 1.1 2.2 1 1 1 2 2 2 0 Soluble NSF attachment protein, SNAP PatG_D PF18047.1 gi|330509135|ref|YP_004385563.1| - 1.9e-34 118.4 0.0 3.5e-34 117.6 0.0 1.5 1 1 0 1 1 1 1 PatG Domain PatG_C PF18065.1 gi|330509135|ref|YP_004385563.1| - 1.6e-28 98.9 1.1 2.1e-28 98.6 0.4 1.5 2 0 0 2 2 2 1 PatG C-terminal MIX PF18529.1 gi|330509135|ref|YP_004385563.1| - 0.11 12.1 0.0 0.9 9.2 0.0 2.0 2 0 0 2 2 2 0 Mitochondrial membrane-anchored proteins ABC_tran PF00005.27 gi|330509136|ref|YP_004385564.1| - 8.7e-09 36.0 0.0 1.2e-08 35.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330509136|ref|YP_004385564.1| - 0.17 11.7 0.0 0.19 11.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330509136|ref|YP_004385564.1| - 0.17 11.3 0.0 0.23 10.9 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain PatG_D PF18047.1 gi|330509138|ref|YP_004385566.1| - 1.4e-34 118.9 0.0 2.6e-34 118.0 0.0 1.5 1 1 0 1 1 1 1 PatG Domain PatG_C PF18065.1 gi|330509138|ref|YP_004385566.1| - 1.1e-28 99.4 0.4 2.1e-28 98.6 0.4 1.4 1 0 0 1 1 1 1 PatG C-terminal ABC_tran PF00005.27 gi|330509139|ref|YP_004385567.1| - 6.1e-10 39.7 0.0 8.7e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330509139|ref|YP_004385567.1| - 0.0046 16.8 0.0 0.0051 16.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330509139|ref|YP_004385567.1| - 0.038 13.4 0.0 0.043 13.2 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain TPR_1 PF00515.28 gi|330509140|ref|YP_004385568.1| - 1.2e-53 176.8 8.6 1e-08 34.6 0.5 7.2 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330509140|ref|YP_004385568.1| - 2.8e-48 158.1 13.3 7e-08 32.1 0.0 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330509140|ref|YP_004385568.1| - 2.8e-48 158.2 4.8 3.8e-08 32.8 0.4 7.2 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330509140|ref|YP_004385568.1| - 3.2e-37 125.9 14.3 4.9e-07 29.3 0.0 6.7 4 3 3 7 7 7 6 TPR repeat TPR_16 PF13432.6 gi|330509140|ref|YP_004385568.1| - 7.3e-31 106.6 0.0 4.4e-11 43.2 0.0 4.3 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330509140|ref|YP_004385568.1| - 1e-29 102.7 3.8 1.7e-13 50.7 0.0 4.7 3 2 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330509140|ref|YP_004385568.1| - 2.4e-29 99.5 0.2 1.6e-05 25.4 0.0 7.1 1 1 6 7 7 7 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330509140|ref|YP_004385568.1| - 9.3e-23 78.9 0.1 0.0036 17.6 0.0 7.1 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330509140|ref|YP_004385568.1| - 5.7e-21 74.8 0.2 2.6e-05 24.6 0.0 4.7 1 1 3 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330509140|ref|YP_004385568.1| - 1e-18 67.2 0.0 4.4e-05 23.5 0.0 4.3 1 1 1 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330509140|ref|YP_004385568.1| - 2e-16 59.5 3.2 0.51 11.1 0.0 7.2 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330509140|ref|YP_004385568.1| - 7.3e-13 47.6 0.1 0.094 12.8 0.0 6.3 5 1 1 6 6 6 3 Tetratricopeptide repeat DUF3856 PF12968.7 gi|330509140|ref|YP_004385568.1| - 4.5e-12 46.2 9.7 0.0054 16.8 0.2 6.7 2 2 4 6 6 6 2 Domain of Unknown Function (DUF3856) ANAPC3 PF12895.7 gi|330509140|ref|YP_004385568.1| - 1.1e-10 41.5 3.3 0.0094 16.2 0.0 4.4 1 1 5 6 6 6 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|330509140|ref|YP_004385568.1| - 7.1e-09 35.3 8.9 0.59 10.1 0.0 6.4 7 0 0 7 7 7 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|330509140|ref|YP_004385568.1| - 7.8e-09 35.0 3.2 0.059 12.3 0.1 3.7 1 1 3 4 4 4 4 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|330509140|ref|YP_004385568.1| - 2.8e-07 31.1 2.6 0.32 11.4 0.1 4.6 1 1 1 3 3 3 2 Bacterial transcriptional activator domain TPR_21 PF09976.9 gi|330509140|ref|YP_004385568.1| - 6.9e-07 29.2 6.3 0.063 13.0 0.0 4.7 1 1 4 5 5 5 2 Tetratricopeptide repeat-like domain RPN7 PF10602.9 gi|330509140|ref|YP_004385568.1| - 7.8e-07 29.0 5.4 0.19 11.4 0.1 4.6 3 2 2 5 5 5 2 26S proteasome subunit RPN7 SNAP PF14938.6 gi|330509140|ref|YP_004385568.1| - 5.8e-06 25.9 6.2 0.00014 21.4 0.0 3.3 1 1 1 3 3 3 1 Soluble NSF attachment protein, SNAP NRBF2_MIT PF17169.4 gi|330509140|ref|YP_004385568.1| - 1.9e-05 24.8 2.1 8 6.8 0.0 4.9 3 2 2 5 5 5 0 MIT domain of nuclear receptor-binding factor 2 MIT PF04212.18 gi|330509140|ref|YP_004385568.1| - 0.00013 21.9 18.6 0.018 15.1 1.1 5.3 5 1 1 6 6 5 1 MIT (microtubule interacting and transport) domain TPR_20 PF14561.6 gi|330509140|ref|YP_004385568.1| - 0.00016 22.0 0.0 0.11 12.8 0.0 3.5 2 1 2 4 4 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330509140|ref|YP_004385568.1| - 0.00016 21.7 3.8 0.91 9.6 0.1 5.5 6 0 0 6 6 6 1 Fis1 C-terminal tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|330509140|ref|YP_004385568.1| - 0.00028 21.4 0.5 1 9.8 0.0 3.7 1 1 3 4 4 4 1 Alkyl sulfatase dimerisation SRP_TPR_like PF17004.5 gi|330509140|ref|YP_004385568.1| - 0.00031 20.7 0.7 0.15 12.1 0.0 3.2 2 1 1 3 3 3 1 Putative TPR-like repeat DUF5113 PF17140.4 gi|330509140|ref|YP_004385568.1| - 0.00033 20.5 0.3 3.3 7.5 0.0 4.2 3 2 2 5 5 5 1 Domain of unknown function (DUF5113) FAT PF02259.23 gi|330509140|ref|YP_004385568.1| - 0.0011 18.2 1.5 0.51 9.5 0.0 3.2 1 1 2 3 3 3 1 FAT domain LemA PF04011.12 gi|330509140|ref|YP_004385568.1| - 0.002 18.0 1.5 22 4.9 0.1 4.9 4 2 1 5 5 5 0 LemA family PPR PF01535.20 gi|330509140|ref|YP_004385568.1| - 0.0027 17.8 6.0 27 5.3 0.0 5.9 6 0 0 6 6 6 0 PPR repeat TPR_15 PF13429.6 gi|330509140|ref|YP_004385568.1| - 0.0059 15.9 0.4 0.079 12.2 0.2 2.5 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_5 PF12688.7 gi|330509140|ref|YP_004385568.1| - 0.0064 16.7 0.6 23 5.3 0.0 4.0 2 1 1 4 4 4 0 Tetratrico peptide repeat Ribosomal_S16 PF00886.19 gi|330509140|ref|YP_004385568.1| - 0.011 15.8 3.9 1.2 9.3 0.1 3.9 3 2 1 4 4 4 0 Ribosomal protein S16 SHNi-TPR PF10516.9 gi|330509140|ref|YP_004385568.1| - 0.015 14.8 0.0 7.6 6.1 0.0 3.8 4 0 0 4 4 4 0 SHNi-TPR NACHT_N PF17100.5 gi|330509140|ref|YP_004385568.1| - 0.025 14.4 0.3 1.2 8.9 0.0 2.5 2 1 0 2 2 2 0 N-terminal domain of NWD NACHT-NTPase PknG_TPR PF16918.5 gi|330509140|ref|YP_004385568.1| - 0.04 12.6 0.1 0.97 8.1 0.0 2.1 1 1 1 2 2 2 0 Protein kinase G tetratricopeptide repeat FixH PF05751.11 gi|330509140|ref|YP_004385568.1| - 0.042 13.9 0.0 0.075 13.1 0.0 1.4 1 0 0 1 1 1 0 FixH MAS20 PF02064.15 gi|330509140|ref|YP_004385568.1| - 0.046 13.8 0.0 1.6 8.8 0.0 2.4 2 0 0 2 2 2 0 MAS20 protein import receptor PPTA PF01239.22 gi|330509140|ref|YP_004385568.1| - 0.051 13.3 0.0 7.2 6.5 0.0 2.7 2 0 0 2 2 2 0 Protein prenyltransferase alpha subunit repeat MscS_porin PF12795.7 gi|330509140|ref|YP_004385568.1| - 0.057 13.0 1.7 5.9 6.4 0.0 3.5 4 1 1 5 5 5 0 Mechanosensitive ion channel porin domain DELLA PF12041.8 gi|330509140|ref|YP_004385568.1| - 0.11 12.4 0.0 11 5.9 0.0 2.8 2 1 1 3 3 2 0 Transcriptional regulator DELLA protein N terminal NAPRTase PF04095.16 gi|330509140|ref|YP_004385568.1| - 0.21 11.1 0.3 1.2 8.6 0.3 2.3 1 1 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) family DUF2225 PF09986.9 gi|330509140|ref|YP_004385568.1| - 0.67 9.6 3.7 1.8 8.3 0.5 2.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) HTH_Bact PF18768.1 gi|330509140|ref|YP_004385568.1| - 1.5 8.5 13.8 32 4.2 0.1 5.9 6 1 1 7 7 7 0 Helix-turn-helix bacterial domain DUF1510 PF07423.11 gi|330509140|ref|YP_004385568.1| - 1.5 9.0 4.2 18 5.6 0.0 3.6 4 1 1 5 5 3 0 Domain of unknown function (DUF1510) PatG_D PF18047.1 gi|330509141|ref|YP_004385569.1| - 8.3e-39 132.4 0.0 1.5e-38 131.7 0.0 1.3 1 0 0 1 1 1 1 PatG Domain PatG_C PF18065.1 gi|330509141|ref|YP_004385569.1| - 7.9e-31 106.4 0.3 1.4e-30 105.6 0.3 1.4 1 0 0 1 1 1 1 PatG C-terminal RPA_interact_N PF14766.6 gi|330509143|ref|YP_004385571.1| - 0.032 13.9 1.4 0.078 12.6 1.4 1.6 1 0 0 1 1 1 0 Replication protein A interacting N-terminal Radical_SAM PF04055.21 gi|330509144|ref|YP_004385572.1| - 2e-11 44.5 2.4 1.6e-10 41.6 0.1 2.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330509144|ref|YP_004385572.1| - 7.9e-09 35.9 0.0 7.9e-09 35.9 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330509144|ref|YP_004385572.1| - 0.00035 20.7 0.0 0.00035 20.7 0.0 2.8 3 0 0 3 3 3 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|330509145|ref|YP_004385573.1| - 1.3e-05 25.6 0.0 1.9e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|330509145|ref|YP_004385573.1| - 0.00063 20.2 3.1 0.0025 18.3 3.1 2.0 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain ABC_tran PF00005.27 gi|330509146|ref|YP_004385574.1| - 2.4e-28 99.4 0.0 4.5e-28 98.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|330509146|ref|YP_004385574.1| - 2.2e-27 96.4 13.5 3.1e-27 95.9 13.5 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|330509146|ref|YP_004385574.1| - 2.2e-11 43.6 3.2 3.5e-07 29.9 0.4 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|330509146|ref|YP_004385574.1| - 6.4e-11 42.6 0.1 2.3e-05 24.3 0.0 2.5 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|330509146|ref|YP_004385574.1| - 1.7e-06 28.0 0.0 4.6e-06 26.6 0.0 1.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|330509146|ref|YP_004385574.1| - 1.2e-05 25.9 0.9 3e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|330509146|ref|YP_004385574.1| - 0.00043 20.7 1.5 0.0052 17.2 0.4 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|330509146|ref|YP_004385574.1| - 0.016 13.9 1.0 0.37 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|330509146|ref|YP_004385574.1| - 0.023 14.6 0.7 6.9 6.5 0.4 2.3 2 0 0 2 2 2 0 NTPase AAA_29 PF13555.6 gi|330509146|ref|YP_004385574.1| - 0.027 14.2 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|330509146|ref|YP_004385574.1| - 0.042 14.1 0.0 0.25 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|330509146|ref|YP_004385574.1| - 0.061 13.2 0.2 0.22 11.4 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase MCM PF00493.23 gi|330509146|ref|YP_004385574.1| - 0.088 11.9 0.1 2.3 7.3 0.0 2.3 2 0 0 2 2 2 0 MCM P-loop domain Peptidase_S8 PF00082.22 gi|330509147|ref|YP_004385575.1| - 9.7e-30 103.8 0.3 2.3e-29 102.6 0.3 1.6 1 0 0 1 1 1 1 Subtilase family Invasin_D3 PF09134.10 gi|330509147|ref|YP_004385575.1| - 0.038 14.3 0.1 0.13 12.6 0.1 1.9 1 0 0 1 1 1 0 Invasin, domain 3 fn3 PF00041.21 gi|330509147|ref|YP_004385575.1| - 0.17 12.3 0.7 1.1 9.7 0.2 2.6 2 1 0 2 2 2 0 Fibronectin type III domain Peptidase_S8 PF00082.22 gi|330509148|ref|YP_004385576.1| - 4.2e-32 111.6 1.8 7.9e-32 110.7 1.8 1.4 1 0 0 1 1 1 1 Subtilase family fn3 PF00041.21 gi|330509148|ref|YP_004385576.1| - 0.023 15.0 1.4 0.04 14.3 0.4 1.9 2 0 0 2 2 2 0 Fibronectin type III domain DUF4959 PF16323.5 gi|330509148|ref|YP_004385576.1| - 0.033 14.5 3.1 0.038 14.3 0.3 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4959) DUF4097 PF13349.6 gi|330509148|ref|YP_004385576.1| - 0.57 9.5 3.9 5.5 6.2 0.0 3.5 4 0 0 4 4 4 0 Putative adhesin # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_concilii_GP6_uid66207/NC_015416.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_concilii_GP6_uid66207/NC_015416.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_concilii_GP6_uid66207/NC_015416.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_concilii_GP6_uid66207/NC_015416.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:07:44 2019 # [ok]