# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|154149550|ref|YP_001403168.1| - 7.7e-20 70.7 0.0 1.6e-19 69.6 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|154149550|ref|YP_001403168.1| - 1.9e-10 41.2 0.0 4.8e-10 39.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|154149550|ref|YP_001403168.1| - 3.5e-10 40.5 0.1 2e-09 38.1 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|154149550|ref|YP_001403168.1| - 6.8e-09 36.2 0.4 4.2e-08 33.7 0.4 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|154149550|ref|YP_001403168.1| - 0.00012 21.4 0.0 0.0026 17.0 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|154149550|ref|YP_001403168.1| - 0.00086 19.3 0.0 0.0021 18.0 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DEAD PF00270.29 gi|154149550|ref|YP_001403168.1| - 0.0013 18.5 1.7 0.0065 16.3 0.5 2.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase TniB PF05621.11 gi|154149550|ref|YP_001403168.1| - 0.0032 16.9 0.0 0.018 14.5 0.0 2.1 1 1 0 1 1 1 1 Bacterial TniB protein KAP_NTPase PF07693.14 gi|154149550|ref|YP_001403168.1| - 0.0051 16.1 1.9 1 8.5 0.1 2.4 2 1 1 3 3 3 2 KAP family P-loop domain NACHT PF05729.12 gi|154149550|ref|YP_001403168.1| - 0.0081 16.1 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_24 PF13479.6 gi|154149550|ref|YP_001403168.1| - 0.012 15.3 0.2 0.026 14.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|154149550|ref|YP_001403168.1| - 0.018 14.7 0.0 0.054 13.2 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|154149550|ref|YP_001403168.1| - 0.024 14.2 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_2 PF07724.14 gi|154149550|ref|YP_001403168.1| - 0.03 14.4 0.5 0.14 12.3 0.5 2.0 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_assoc_2 PF16193.5 gi|154149550|ref|YP_001403168.1| - 0.03 14.6 0.2 0.077 13.3 0.2 1.6 1 0 0 1 1 1 0 AAA C-terminal domain FtsK_SpoIIIE PF01580.18 gi|154149550|ref|YP_001403168.1| - 0.031 13.6 0.1 0.4 10.0 0.0 2.4 3 0 0 3 3 3 0 FtsK/SpoIIIE family T2SSE PF00437.20 gi|154149550|ref|YP_001403168.1| - 0.047 12.7 0.0 0.098 11.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|154149550|ref|YP_001403168.1| - 0.06 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PRC PF05239.16 gi|154149550|ref|YP_001403168.1| - 0.082 13.0 0.5 0.4 10.8 0.0 2.3 2 0 0 2 2 2 0 PRC-barrel domain HATPase_c_3 PF13589.6 gi|154149550|ref|YP_001403168.1| - 0.096 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Microtub_bd PF16796.5 gi|154149550|ref|YP_001403168.1| - 0.096 12.6 0.1 0.25 11.3 0.0 1.7 2 0 0 2 2 1 0 Microtubule binding MCM PF00493.23 gi|154149550|ref|YP_001403168.1| - 0.61 9.1 3.3 0.6 9.2 0.5 2.4 3 1 0 3 3 3 0 MCM P-loop domain AsnC_trans_reg PF01037.21 gi|154149551|ref|YP_001403169.1| - 2.2e-12 46.7 0.1 3.6e-12 46.1 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|154149551|ref|YP_001403169.1| - 1.6e-10 40.7 0.5 1.6e-10 40.7 0.5 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|154149551|ref|YP_001403169.1| - 6.8e-07 28.7 0.9 1.3e-06 27.8 0.9 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding IPPT PF01715.17 gi|154149551|ref|YP_001403169.1| - 0.011 15.6 0.2 0.013 15.3 0.2 1.3 1 1 0 1 1 1 0 IPP transferase MarR PF01047.22 gi|154149551|ref|YP_001403169.1| - 0.076 13.0 0.2 0.14 12.1 0.2 1.4 1 0 0 1 1 1 0 MarR family Aminotran_1_2 PF00155.21 gi|154149552|ref|YP_001403170.1| - 1.5e-68 231.6 0.0 1.7e-68 231.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|154149552|ref|YP_001403170.1| - 1.4e-10 41.0 0.0 2.4e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|154149552|ref|YP_001403170.1| - 1.2e-06 27.7 0.0 1.7e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|154149552|ref|YP_001403170.1| - 0.003 16.1 0.0 0.0064 15.1 0.0 1.4 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|154149552|ref|YP_001403170.1| - 0.15 10.7 0.0 0.22 10.2 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Adenylsucc_synt PF00709.21 gi|154149553|ref|YP_001403171.1| - 1.6e-79 267.8 5.2 1.1e-39 136.6 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Trm112p PF03966.16 gi|154149554|ref|YP_001403172.1| - 8.3e-09 35.9 1.2 1.4e-08 35.2 1.2 1.4 1 1 0 1 1 1 1 Trm112p-like protein Elf1 PF05129.13 gi|154149554|ref|YP_001403172.1| - 0.0046 17.0 0.0 0.0046 17.0 0.0 1.0 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|154149554|ref|YP_001403172.1| - 0.019 15.4 0.5 0.021 15.2 0.5 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar Sensor_TM1 PF13755.6 gi|154149555|ref|YP_001403173.1| - 0.046 13.5 0.6 0.097 12.4 0.6 1.5 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain DUF4366 PF14283.6 gi|154149555|ref|YP_001403173.1| - 0.078 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) SKG6 PF08693.10 gi|154149555|ref|YP_001403173.1| - 1.4 8.4 7.3 1 8.8 1.9 2.4 2 0 0 2 2 2 0 Transmembrane alpha-helix domain CobD_Cbib PF03186.13 gi|154149556|ref|YP_001403174.1| - 6.6e-83 278.1 0.1 8e-83 277.8 0.1 1.1 1 0 0 1 1 1 1 CobD/Cbib protein SOR_SNZ PF01680.17 gi|154149557|ref|YP_001403175.1| - 7.1e-106 352.6 9.5 1.1e-105 352.0 9.5 1.3 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|154149557|ref|YP_001403175.1| - 5.8e-10 38.9 6.2 1.5e-08 34.2 0.3 2.3 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|154149557|ref|YP_001403175.1| - 0.0004 19.6 0.3 0.27 10.3 0.0 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|154149557|ref|YP_001403175.1| - 0.0016 17.7 0.1 0.13 11.4 0.0 2.3 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase TetR_C_27 PF17935.1 gi|154149557|ref|YP_001403175.1| - 0.0044 17.1 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain DUF561 PF04481.12 gi|154149557|ref|YP_001403175.1| - 0.014 14.6 0.5 0.057 12.6 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF561) NanE PF04131.14 gi|154149557|ref|YP_001403175.1| - 0.014 14.6 2.2 0.045 12.9 0.0 2.5 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|154149557|ref|YP_001403175.1| - 0.021 14.2 0.1 0.021 14.2 0.1 1.9 2 1 0 2 2 2 0 Nitronate monooxygenase Ribosomal_S5_C PF03719.15 gi|154149557|ref|YP_001403175.1| - 0.064 12.7 0.3 0.27 10.7 0.0 2.2 3 0 0 3 3 3 0 Ribosomal protein S5, C-terminal domain SNO PF01174.19 gi|154149558|ref|YP_001403176.1| - 5.1e-51 173.2 0.0 6.3e-51 172.9 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|154149558|ref|YP_001403176.1| - 1.5e-05 24.7 0.0 1.9e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Fer4_7 PF12838.7 gi|154149559|ref|YP_001403177.1| - 1.2e-05 25.8 5.9 2.2e-05 24.9 5.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154149559|ref|YP_001403177.1| - 1.9e-05 24.5 8.5 0.034 14.2 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154149559|ref|YP_001403177.1| - 4.9e-05 24.2 11.7 0.024 15.5 11.7 2.3 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|154149559|ref|YP_001403177.1| - 7.7e-05 22.3 11.5 0.01 15.6 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154149559|ref|YP_001403177.1| - 0.00086 19.4 8.0 0.0025 17.9 0.9 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154149559|ref|YP_001403177.1| - 0.0027 18.1 10.9 0.23 12.0 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|154149559|ref|YP_001403177.1| - 0.0046 17.1 11.1 0.012 15.7 2.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154149559|ref|YP_001403177.1| - 0.011 15.8 12.6 0.081 13.1 12.9 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|154149559|ref|YP_001403177.1| - 0.013 15.7 4.9 0.079 13.2 0.8 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154149559|ref|YP_001403177.1| - 0.015 15.3 11.4 0.51 10.6 3.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|154149559|ref|YP_001403177.1| - 0.026 15.0 5.9 0.31 11.6 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|154149559|ref|YP_001403177.1| - 0.11 13.5 14.4 1.1 10.4 5.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|154149559|ref|YP_001403177.1| - 0.3 11.5 8.9 0.84 10.1 2.3 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain MIP PF00230.20 gi|154149560|ref|YP_001403178.1| - 7e-52 176.4 23.2 8.1e-52 176.2 23.2 1.0 1 0 0 1 1 1 1 Major intrinsic protein DNA_alkylation PF08713.11 gi|154149561|ref|YP_001403179.1| - 1.8e-60 204.3 1.3 2.1e-60 204.1 1.3 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme RHH_5 PF07878.11 gi|154149561|ref|YP_001403179.1| - 0.0066 16.3 0.4 0.44 10.5 0.1 2.6 2 0 0 2 2 2 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Dicer_dimer PF03368.14 gi|154149561|ref|YP_001403179.1| - 0.048 13.8 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Dicer dimerisation domain HEAT_2 PF13646.6 gi|154149561|ref|YP_001403179.1| - 0.12 12.8 0.0 0.3 11.5 0.0 1.8 1 0 0 1 1 1 0 HEAT repeats HxlR PF01638.17 gi|154149562|ref|YP_001403180.1| - 3.6e-35 119.7 0.0 4.3e-35 119.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|154149562|ref|YP_001403180.1| - 0.0099 15.8 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|154149562|ref|YP_001403180.1| - 0.064 13.2 0.0 0.086 12.8 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.6 gi|154149562|ref|YP_001403180.1| - 0.1 12.8 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Flavin_Reduct PF01613.18 gi|154149563|ref|YP_001403181.1| - 8.4e-20 71.4 0.0 1e-19 71.1 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Nitroreductase PF00881.24 gi|154149564|ref|YP_001403182.1| - 2.1e-22 80.0 0.0 3.1e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4_6 PF12837.7 gi|154149564|ref|YP_001403182.1| - 2.7e-10 39.8 12.8 1.4e-05 25.0 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|154149564|ref|YP_001403182.1| - 1.7e-09 37.1 16.4 1.3e-06 27.9 2.8 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|154149564|ref|YP_001403182.1| - 6.8e-09 35.7 9.6 1.1e-08 35.0 9.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154149564|ref|YP_001403182.1| - 3e-08 33.7 8.4 5.3e-08 32.9 8.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|154149564|ref|YP_001403182.1| - 1.8e-06 28.4 22.5 7.2e-06 26.5 11.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154149564|ref|YP_001403182.1| - 7e-06 25.8 12.5 0.00027 20.8 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|154149564|ref|YP_001403182.1| - 9.6e-06 26.1 8.7 0.014 15.9 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154149564|ref|YP_001403182.1| - 1.7e-05 25.1 7.4 0.015 15.8 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154149564|ref|YP_001403182.1| - 1.8e-05 25.5 7.6 0.045 14.7 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|154149564|ref|YP_001403182.1| - 0.00015 22.0 13.2 0.021 15.3 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154149564|ref|YP_001403182.1| - 0.00017 21.6 11.9 0.014 15.6 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain TM1586_NiRdase PF14512.6 gi|154149564|ref|YP_001403182.1| - 0.011 15.3 0.0 1.2 8.6 0.0 2.5 2 1 0 2 2 2 0 Putative TM nitroreductase Fer4_13 PF13370.6 gi|154149564|ref|YP_001403182.1| - 3.4 8.3 13.7 1 9.9 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|154149564|ref|YP_001403182.1| - 4.5 7.5 12.3 3.2 8.0 3.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain CMD PF02627.20 gi|154149565|ref|YP_001403183.1| - 1.6e-35 121.0 0.3 1.1e-18 67.1 0.1 2.2 2 0 0 2 2 2 2 Carboxymuconolactone decarboxylase family TIM21 PF08294.11 gi|154149565|ref|YP_001403183.1| - 0.066 13.1 0.0 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 TIM21 DUF4026 PF13218.6 gi|154149565|ref|YP_001403183.1| - 0.25 10.3 0.0 0.37 9.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4026) FMN_red PF03358.15 gi|154149566|ref|YP_001403184.1| - 3.3e-27 95.1 0.0 4.4e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154149566|ref|YP_001403184.1| - 3.9e-09 36.5 0.0 4.7e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|154149567|ref|YP_001403185.1| - 1.4e-21 76.9 0.0 1.7e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154149567|ref|YP_001403185.1| - 2.5e-12 46.9 0.0 3.2e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|154149567|ref|YP_001403185.1| - 0.038 14.2 0.0 0.23 11.7 0.0 2.0 2 0 0 2 2 2 0 Flavodoxin domain Nitroreductase PF00881.24 gi|154149568|ref|YP_001403186.1| - 6e-38 130.6 0.0 8.4e-38 130.1 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|154149568|ref|YP_001403186.1| - 1.1e-15 57.8 0.0 1.4e-05 24.8 0.1 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase TrkA_N PF02254.18 gi|154149568|ref|YP_001403186.1| - 0.13 12.6 0.2 0.48 10.7 0.1 2.0 1 1 1 2 2 2 0 TrkA-N domain YHS PF04945.13 gi|154149569|ref|YP_001403187.1| - 1e-15 57.5 7.6 1.3e-15 57.2 7.6 1.1 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|154149569|ref|YP_001403187.1| - 0.027 14.8 6.3 0.039 14.3 6.1 1.5 1 1 0 1 1 1 0 Archaeal TRASH domain HicB-like_2 PF15970.5 gi|154149569|ref|YP_001403187.1| - 0.093 12.9 0.3 0.11 12.7 0.3 1.2 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Fasciclin PF02469.22 gi|154149570|ref|YP_001403188.1| - 1.2e-20 74.0 0.0 1.4e-20 73.8 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain Ribonuc_red_lgC PF02867.15 gi|154149571|ref|YP_001403189.1| - 4.8e-147 490.7 0.0 3e-144 481.4 0.0 2.8 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|154149571|ref|YP_001403189.1| - 2.7e-14 52.9 0.0 6.6e-14 51.7 0.0 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain TSCPD PF12637.7 gi|154149571|ref|YP_001403189.1| - 0.0057 16.9 2.8 0.0082 16.4 1.4 2.1 2 0 0 2 2 2 1 TSCPD domain Voldacs PF03517.13 gi|154149571|ref|YP_001403189.1| - 0.16 12.1 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 Regulator of volume decrease after cellular swelling IBR PF01485.21 gi|154149571|ref|YP_001403189.1| - 0.27 11.5 4.0 0.73 10.1 4.0 1.7 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain H_PPase PF03030.16 gi|154149572|ref|YP_001403190.1| - 1.9e-253 842.9 45.4 2.2e-253 842.7 45.4 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Proton_antipo_M PF00361.20 gi|154149573|ref|YP_001403191.1| - 6.9e-51 173.2 28.8 6.9e-51 173.2 28.8 2.6 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|154149573|ref|YP_001403191.1| - 4.2e-10 39.6 16.9 6.4e-10 39.0 0.9 3.9 3 1 1 4 4 4 2 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF4500 PF14937.6 gi|154149573|ref|YP_001403191.1| - 0.044 13.8 1.7 0.34 11.0 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4500) NADHdh PF00146.21 gi|154149574|ref|YP_001403192.1| - 2.1e-40 138.9 18.3 3.1e-40 138.4 18.3 1.2 1 0 0 1 1 1 1 NADH dehydrogenase Oxidored_q6 PF01058.22 gi|154149575|ref|YP_001403193.1| - 4.3e-27 94.5 2.0 5.6e-27 94.1 2.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 gi|154149576|ref|YP_001403194.1| - 9.2e-10 39.2 0.0 1.1e-09 38.9 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.19 gi|154149577|ref|YP_001403195.1| - 6.1e-62 209.2 0.0 7.6e-45 153.1 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|154149577|ref|YP_001403195.1| - 3.1e-16 59.4 0.4 1.2e-14 54.1 0.0 2.7 3 0 0 3 3 3 1 Nickel-dependent hydrogenase Fer4_7 PF12838.7 gi|154149578|ref|YP_001403196.1| - 6e-11 42.8 10.6 5.1e-06 27.0 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|154149578|ref|YP_001403196.1| - 2.4e-10 39.8 19.4 9.4e-07 28.4 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|154149578|ref|YP_001403196.1| - 3.6e-07 30.6 9.5 0.00012 22.6 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154149578|ref|YP_001403196.1| - 4.6e-07 29.5 18.0 0.00016 21.5 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154149578|ref|YP_001403196.1| - 5.5e-07 30.4 15.2 0.00095 20.1 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|154149578|ref|YP_001403196.1| - 5.6e-07 29.6 18.5 5.7e-05 23.2 3.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154149578|ref|YP_001403196.1| - 8.8e-07 29.0 19.3 1.2e-06 28.5 19.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154149578|ref|YP_001403196.1| - 1.3e-06 28.7 8.5 0.0078 16.6 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154149578|ref|YP_001403196.1| - 1.5e-06 28.0 20.4 1.1e-05 25.2 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|154149578|ref|YP_001403196.1| - 2.3e-06 27.7 20.4 3.5e-06 27.1 20.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154149578|ref|YP_001403196.1| - 0.01 16.4 16.2 0.035 14.6 1.9 2.7 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|154149578|ref|YP_001403196.1| - 0.017 15.2 1.0 0.017 15.2 1.0 2.3 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|154149578|ref|YP_001403196.1| - 0.055 14.2 1.0 0.055 14.2 1.0 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|154149578|ref|YP_001403196.1| - 0.13 12.8 6.2 0.13 12.8 6.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|154149578|ref|YP_001403196.1| - 0.13 12.4 16.0 0.45 10.7 16.0 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF930 PF06059.12 gi|154149579|ref|YP_001403197.1| - 0.1 13.2 0.0 0.26 11.8 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF930) MscL PF01741.18 gi|154149580|ref|YP_001403198.1| - 1.3e-19 70.7 7.0 1.7e-19 70.3 7.0 1.1 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL DUF2061 PF09834.9 gi|154149580|ref|YP_001403198.1| - 0.77 10.3 5.3 5 7.7 0.2 2.6 2 1 0 2 2 2 0 Predicted membrane protein (DUF2061) DUF2798 PF11391.8 gi|154149580|ref|YP_001403198.1| - 1.4 9.0 8.9 1.1 9.4 0.2 2.8 2 2 1 3 3 3 0 Protein of unknown function (DUF2798) zinc_ribbon_6 PF14599.6 gi|154149582|ref|YP_001403200.1| - 0.00092 19.2 2.5 0.1 12.6 4.0 2.0 1 1 1 2 2 2 2 Zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|154149582|ref|YP_001403200.1| - 0.037 13.9 1.1 0.039 13.9 1.1 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PPDK_N PF01326.19 gi|154149583|ref|YP_001403201.1| - 2.7e-112 375.3 0.0 4.6e-112 374.5 0.0 1.4 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|154149583|ref|YP_001403201.1| - 2.4e-60 204.1 0.0 3.6e-60 203.5 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|154149583|ref|YP_001403201.1| - 3.4e-25 87.5 0.7 1.6e-24 85.4 0.3 2.4 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain DNA_pol_E_B PF04042.16 gi|154149584|ref|YP_001403202.1| - 2.1e-13 50.1 0.0 3.4e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|154149584|ref|YP_001403202.1| - 1.2e-10 42.2 0.0 1.8e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|154149584|ref|YP_001403202.1| - 2.1e-09 37.8 0.0 5.4e-09 36.4 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|154149584|ref|YP_001403202.1| - 0.00015 21.7 0.0 0.00029 20.7 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain LysE PF01810.18 gi|154149585|ref|YP_001403203.1| - 9.5e-25 87.2 18.5 1.2e-24 86.9 18.5 1.1 1 0 0 1 1 1 1 LysE type translocator DPM3 PF08285.11 gi|154149585|ref|YP_001403203.1| - 7.5 6.8 7.4 2.9 8.2 2.0 2.6 2 1 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Peptidase_S24 PF00717.23 gi|154149586|ref|YP_001403204.1| - 0.00037 20.4 0.0 0.00078 19.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like DUF5385 PF17359.2 gi|154149586|ref|YP_001403204.1| - 0.082 12.5 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5385) UPF0370 PF13980.6 gi|154149586|ref|YP_001403204.1| - 2.5 8.2 6.3 6.9 6.8 6.3 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0370) Radical_SAM PF04055.21 gi|154149587|ref|YP_001403205.1| - 1.1e-11 45.4 0.0 2e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF1805 PF08827.11 gi|154149588|ref|YP_001403206.1| - 1.6e-21 76.4 0.0 2.3e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) IMS PF00817.20 gi|154149588|ref|YP_001403206.1| - 0.045 13.7 0.0 0.055 13.5 0.0 1.1 1 0 0 1 1 1 0 impB/mucB/samB family Radical_SAM PF04055.21 gi|154149589|ref|YP_001403207.1| - 1.5e-10 41.7 0.1 2.1e-10 41.2 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Pyridox_ox_2 PF12900.7 gi|154149590|ref|YP_001403208.1| - 3e-28 98.6 0.0 3.4e-28 98.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|154149590|ref|YP_001403208.1| - 3.2e-07 30.4 0.0 4.5e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF2470 PF10615.9 gi|154149590|ref|YP_001403208.1| - 0.018 15.6 0.0 0.031 14.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2470) DUF123 PF01986.16 gi|154149591|ref|YP_001403209.1| - 5.1e-29 100.6 0.0 6.9e-29 100.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 Lactamase_B PF00753.27 gi|154149592|ref|YP_001403210.1| - 5.7e-25 88.5 3.4 7.5e-25 88.1 3.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|154149592|ref|YP_001403210.1| - 9.2e-06 25.3 0.5 1.3e-05 24.8 0.5 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|154149592|ref|YP_001403210.1| - 0.0016 18.0 0.3 0.022 14.3 0.3 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|154149592|ref|YP_001403210.1| - 0.16 11.8 0.6 0.35 10.8 0.6 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain ThiC_Rad_SAM PF01964.18 gi|154149593|ref|YP_001403211.1| - 1.2e-158 528.3 1.8 1.4e-158 528.1 1.8 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family TPR_12 PF13424.6 gi|154149594|ref|YP_001403212.1| - 0.00016 21.9 9.2 0.08 13.2 0.1 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154149594|ref|YP_001403212.1| - 0.0003 20.7 2.9 0.22 11.9 0.0 4.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154149594|ref|YP_001403212.1| - 0.00038 20.4 12.8 0.52 10.5 0.0 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|154149594|ref|YP_001403212.1| - 0.06 12.7 1.2 0.52 9.6 0.3 2.2 2 0 0 2 2 2 0 MalT-like TPR region TPR_1 PF00515.28 gi|154149594|ref|YP_001403212.1| - 1 9.3 12.4 7.5 6.6 0.0 4.8 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154149594|ref|YP_001403212.1| - 4.6 8.3 18.3 8.3 7.5 0.5 5.7 4 2 2 6 6 6 0 Tetratricopeptide repeat STAS PF01740.21 gi|154149595|ref|YP_001403213.1| - 5.3e-15 55.1 0.0 7.6e-15 54.6 0.0 1.3 1 1 0 1 1 1 1 STAS domain STAS_2 PF13466.6 gi|154149595|ref|YP_001403213.1| - 9e-09 35.6 0.0 1.1e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 gi|154149596|ref|YP_001403214.1| - 9.3e-10 38.2 0.0 2.8e-09 36.6 0.0 1.8 2 1 0 2 2 2 1 STAS domain STAS_2 PF13466.6 gi|154149596|ref|YP_001403214.1| - 0.0013 19.1 0.0 0.002 18.4 0.0 1.3 1 0 0 1 1 1 1 STAS domain Acetyltransf_1 PF00583.25 gi|154149597|ref|YP_001403215.1| - 1.9e-08 34.5 0.0 3.6e-08 33.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|154149597|ref|YP_001403215.1| - 0.006 17.0 0.0 0.018 15.4 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|154149597|ref|YP_001403215.1| - 0.015 15.3 0.0 0.063 13.3 0.0 2.0 2 0 0 2 2 2 0 FR47-like protein Acetyltransf_10 PF13673.7 gi|154149597|ref|YP_001403215.1| - 0.015 15.3 0.0 0.032 14.2 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1697 PF08002.11 gi|154149598|ref|YP_001403216.1| - 3.8e-34 118.1 0.0 4.6e-34 117.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1697) LEA_2 PF03168.13 gi|154149599|ref|YP_001403217.1| - 8.7e-16 58.3 0.0 1.1e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 Late embryogenesis abundant protein AIRC PF00731.20 gi|154149601|ref|YP_001403219.1| - 6.4e-47 158.9 0.7 7e-47 158.7 0.7 1.0 1 0 0 1 1 1 1 AIR carboxylase Aminotran_5 PF00266.19 gi|154149602|ref|YP_001403220.1| - 2.1e-36 125.7 0.0 2.4e-36 125.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DMRL_synthase PF00885.19 gi|154149603|ref|YP_001403221.1| - 8.3e-17 61.3 0.7 9.1e-17 61.2 0.7 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|154149604|ref|YP_001403222.1| - 2.7e-32 111.5 0.3 3e-32 111.4 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.21 gi|154149605|ref|YP_001403223.1| - 3.3e-67 227.2 0.0 3.8e-67 227.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|154149605|ref|YP_001403223.1| - 0.0001 21.8 0.0 0.00015 21.2 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|154149605|ref|YP_001403223.1| - 0.0012 17.9 0.0 0.002 17.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|154149605|ref|YP_001403223.1| - 0.0061 15.1 0.0 0.0093 14.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme MFS_1 PF07690.16 gi|154149606|ref|YP_001403224.1| - 3.1e-49 167.8 48.8 3.1e-49 167.8 48.8 2.0 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|154149606|ref|YP_001403224.1| - 1.4e-06 27.4 20.7 1.4e-06 27.4 20.7 3.2 3 1 0 3 3 3 2 Sugar (and other) transporter Methyltransf_25 PF13649.6 gi|154149607|ref|YP_001403225.1| - 1.2e-10 41.9 0.0 2.8e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154149607|ref|YP_001403225.1| - 1.3e-07 32.3 0.0 2.3e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154149607|ref|YP_001403225.1| - 2.4e-06 27.4 0.0 3.7e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154149607|ref|YP_001403225.1| - 5.4e-06 26.3 0.0 7.4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154149607|ref|YP_001403225.1| - 5.9e-06 26.9 0.0 1.2e-05 25.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|154149607|ref|YP_001403225.1| - 0.00022 20.6 0.0 0.00032 20.1 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G RrnaAD PF00398.20 gi|154149607|ref|YP_001403225.1| - 0.0016 17.5 0.0 0.0024 17.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|154149607|ref|YP_001403225.1| - 0.0035 16.9 0.0 0.0053 16.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain DREV PF05219.12 gi|154149607|ref|YP_001403225.1| - 0.0036 16.5 0.0 0.0048 16.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase TehB PF03848.14 gi|154149607|ref|YP_001403225.1| - 0.0092 15.4 0.0 0.021 14.2 0.0 1.5 2 0 0 2 2 2 1 Tellurite resistance protein TehB DUF938 PF06080.12 gi|154149607|ref|YP_001403225.1| - 0.072 12.8 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_4 PF02390.17 gi|154149607|ref|YP_001403225.1| - 0.087 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.19 gi|154149607|ref|YP_001403225.1| - 0.088 12.5 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|154149607|ref|YP_001403225.1| - 0.11 11.9 0.2 0.19 11.1 0.2 1.4 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MacB_PCD PF12704.7 gi|154149608|ref|YP_001403226.1| - 1.8e-23 84.0 5.6 1.8e-23 84.0 5.6 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|154149608|ref|YP_001403226.1| - 1.2e-13 51.4 20.9 3.3e-13 49.9 5.7 3.3 3 0 0 3 3 3 2 FtsX-like permease family Serglycin PF04360.12 gi|154149608|ref|YP_001403226.1| - 0.038 13.9 0.3 1.7 8.6 0.2 2.3 2 0 0 2 2 2 0 Serglycin G0-G1_switch_2 PF15103.6 gi|154149608|ref|YP_001403226.1| - 0.077 13.4 0.1 0.077 13.4 0.1 2.3 3 0 0 3 3 3 0 G0/G1 switch protein 2 ABC_tran PF00005.27 gi|154149609|ref|YP_001403227.1| - 4.7e-31 108.1 0.0 6.1e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154149609|ref|YP_001403227.1| - 5.6e-10 39.5 0.2 8.4e-06 25.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|154149609|ref|YP_001403227.1| - 9.8e-06 25.2 0.4 0.026 14.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|154149609|ref|YP_001403227.1| - 0.00018 21.5 0.0 0.00035 20.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|154149609|ref|YP_001403227.1| - 0.0002 21.0 0.1 0.00038 20.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|154149609|ref|YP_001403227.1| - 0.0039 17.6 0.0 0.0067 16.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|154149609|ref|YP_001403227.1| - 0.013 15.7 0.1 0.045 14.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|154149609|ref|YP_001403227.1| - 0.021 14.5 0.0 0.32 10.7 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|154149609|ref|YP_001403227.1| - 0.036 14.6 0.1 0.065 13.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|154149609|ref|YP_001403227.1| - 0.05 13.2 0.1 0.2 11.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|154149609|ref|YP_001403227.1| - 0.055 13.4 0.3 10 6.0 0.1 2.3 2 0 0 2 2 2 0 NTPase T2SSE PF00437.20 gi|154149609|ref|YP_001403227.1| - 0.059 12.4 0.0 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1 PF01926.23 gi|154149609|ref|YP_001403227.1| - 0.077 13.1 0.4 0.35 11.0 0.1 2.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|154149609|ref|YP_001403227.1| - 0.093 12.4 0.0 8.7 5.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain ATPase_2 PF01637.18 gi|154149609|ref|YP_001403227.1| - 0.12 12.3 0.0 0.35 10.7 0.0 1.9 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Cytidylate_kin PF02224.18 gi|154149609|ref|YP_001403227.1| - 0.13 12.0 0.2 0.82 9.4 0.1 2.0 2 0 0 2 2 2 0 Cytidylate kinase AAA_24 PF13479.6 gi|154149609|ref|YP_001403227.1| - 0.16 11.7 0.1 0.38 10.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|154149609|ref|YP_001403227.1| - 0.17 12.4 0.4 0.31 11.6 0.4 1.8 1 1 0 1 1 1 0 AAA domain CARDB PF07705.11 gi|154149610|ref|YP_001403228.1| - 0.0036 17.5 1.0 0.0036 17.5 1.0 3.6 3 1 0 3 3 3 2 CARDB DUF11 PF01345.18 gi|154149610|ref|YP_001403228.1| - 0.033 14.5 12.1 1.3 9.4 0.1 4.1 3 2 0 3 3 3 0 Domain of unknown function DUF11 Yip1 PF04893.17 gi|154149611|ref|YP_001403229.1| - 4.2e-40 137.3 19.5 4.9e-40 137.0 19.5 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1189 PF06691.11 gi|154149611|ref|YP_001403229.1| - 0.0015 18.1 5.3 0.0015 18.1 5.3 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF1189) Rota_NSP4 PF01452.16 gi|154149611|ref|YP_001403229.1| - 0.043 13.5 1.0 0.071 12.8 0.3 1.7 1 1 1 2 2 2 0 Rotavirus non structural protein DUF1282 PF06930.12 gi|154149611|ref|YP_001403229.1| - 0.068 12.9 22.2 0.16 11.7 22.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) DUF3611 PF12263.8 gi|154149611|ref|YP_001403229.1| - 0.68 9.8 14.0 0.027 14.4 4.9 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3611) PALP PF00291.25 gi|154149612|ref|YP_001403230.1| - 1.8e-44 152.3 0.1 2.1e-44 152.1 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NAD_kinase PF01513.21 gi|154149613|ref|YP_001403231.1| - 7.3e-43 146.8 0.2 9e-43 146.5 0.2 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|154149613|ref|YP_001403231.1| - 5.2e-07 29.3 0.1 5.9e-06 25.9 0.1 2.4 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.22 gi|154149613|ref|YP_001403231.1| - 6.7e-05 22.9 0.1 0.00013 21.9 0.1 1.5 1 0 0 1 1 1 1 DeoR C terminal sensor domain F420_oxidored PF03807.17 gi|154149613|ref|YP_001403231.1| - 0.072 13.7 3.1 2.8 8.6 0.0 3.2 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent DUF218 PF02698.17 gi|154149613|ref|YP_001403231.1| - 0.14 12.1 0.0 0.55 10.3 0.0 2.0 2 0 0 2 2 2 0 DUF218 domain Peripla_BP_4 PF13407.6 gi|154149613|ref|YP_001403231.1| - 4.3 6.8 10.4 11 5.5 10.3 1.6 1 1 0 1 1 1 0 Periplasmic binding protein domain Gpr1_Fun34_YaaH PF01184.19 gi|154149614|ref|YP_001403232.1| - 2e-41 141.9 21.1 2.2e-41 141.8 21.1 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family AMP-binding PF00501.28 gi|154149615|ref|YP_001403233.1| - 2.7e-94 316.2 0.0 3.2e-94 315.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|154149615|ref|YP_001403233.1| - 8.7e-27 93.9 0.4 8.7e-27 93.9 0.4 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|154149615|ref|YP_001403233.1| - 3.9e-19 68.3 3.3 3.9e-19 68.3 3.3 1.9 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus Thx PF17070.5 gi|154149615|ref|YP_001403233.1| - 0.65 10.2 5.7 0.29 11.3 0.2 2.9 3 0 0 3 3 3 0 30S ribosomal protein Thx ADP_ribosyl_GH PF03747.14 gi|154149616|ref|YP_001403234.1| - 1.1e-45 156.6 2.1 1.3e-45 156.4 2.1 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase DUF1024 PF06260.12 gi|154149616|ref|YP_001403234.1| - 0.036 14.4 0.5 0.11 12.8 0.2 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1024) Semialdhyde_dh PF01118.24 gi|154149617|ref|YP_001403235.1| - 1.9e-32 112.2 0.0 4e-32 111.2 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|154149617|ref|YP_001403235.1| - 1.9e-19 70.4 0.0 5.2e-19 69.0 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.22 gi|154149617|ref|YP_001403235.1| - 0.00023 22.0 0.0 0.00066 20.5 0.0 1.8 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|154149617|ref|YP_001403235.1| - 0.04 14.0 0.0 0.079 13.1 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 gi|154149617|ref|YP_001403235.1| - 0.053 14.1 0.0 0.13 12.8 0.0 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent CBS PF00571.28 gi|154149618|ref|YP_001403236.1| - 3.6e-31 107.4 1.1 2.1e-14 53.7 0.3 2.2 2 0 0 2 2 2 2 CBS domain DUF3388 PF11868.8 gi|154149618|ref|YP_001403236.1| - 0.077 12.3 0.0 0.19 11.0 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3388) DUF512 PF04459.12 gi|154149618|ref|YP_001403236.1| - 0.097 11.9 0.2 0.2 10.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF512) ArgJ PF01960.18 gi|154149619|ref|YP_001403237.1| - 7.7e-128 426.4 5.0 9.1e-128 426.2 5.0 1.0 1 0 0 1 1 1 1 ArgJ family AA_kinase PF00696.28 gi|154149620|ref|YP_001403238.1| - 5.5e-44 150.6 6.0 6.3e-44 150.4 6.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family Thioredoxin PF00085.20 gi|154149621|ref|YP_001403239.1| - 1.9e-05 24.6 0.0 2.4e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|154149621|ref|YP_001403239.1| - 0.0002 21.5 0.1 0.00037 20.6 0.1 1.4 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_2 PF13098.6 gi|154149621|ref|YP_001403239.1| - 0.00076 19.9 0.0 0.0012 19.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|154149621|ref|YP_001403239.1| - 0.0034 17.4 0.3 0.0073 16.3 0.3 1.5 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.6 gi|154149621|ref|YP_001403239.1| - 0.0056 17.0 0.0 0.0082 16.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like TraF PF13728.6 gi|154149621|ref|YP_001403239.1| - 0.038 13.8 0.0 0.047 13.5 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein DSBA PF01323.20 gi|154149621|ref|YP_001403239.1| - 0.054 13.3 0.2 0.48 10.2 0.0 2.0 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DUF2749 PF10907.8 gi|154149621|ref|YP_001403239.1| - 0.17 12.1 0.3 0.26 11.5 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) SfLAP PF11139.8 gi|154149622|ref|YP_001403240.1| - 4.8e-07 29.4 25.6 4.6e-06 26.2 25.5 2.0 1 1 0 1 1 1 1 Sap, sulfolipid-1-addressing protein DsbD PF02683.15 gi|154149622|ref|YP_001403240.1| - 4.8e-06 26.6 21.0 6.6e-06 26.2 21.0 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Arteri_Gl PF00951.18 gi|154149622|ref|YP_001403240.1| - 0.0048 16.7 7.2 0.0048 16.7 7.2 1.8 2 0 0 2 2 2 1 Arterivirus GL envelope glycoprotein DUF2070 PF09843.9 gi|154149622|ref|YP_001403240.1| - 5.2 5.2 22.8 7.4 4.7 22.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CM_2 PF01817.21 gi|154149623|ref|YP_001403241.1| - 9.8e-17 61.1 1.2 1.3e-16 60.7 1.2 1.1 1 0 0 1 1 1 1 Chorismate mutase type II Osmo_CC PF08946.10 gi|154149623|ref|YP_001403241.1| - 0.014 15.6 1.3 0.032 14.5 1.3 1.6 1 0 0 1 1 1 0 Osmosensory transporter coiled coil DivIC PF04977.15 gi|154149623|ref|YP_001403241.1| - 0.043 13.6 0.0 0.096 12.5 0.0 1.5 2 0 0 2 2 2 0 Septum formation initiator Peptidase_M50 PF02163.22 gi|154149624|ref|YP_001403242.1| - 1.5e-05 24.4 13.6 0.0054 16.0 1.2 2.9 2 1 1 3 3 3 2 Peptidase family M50 FMN_red PF03358.15 gi|154149625|ref|YP_001403243.1| - 6.4e-23 81.2 0.0 8.1e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154149625|ref|YP_001403243.1| - 2.2e-15 56.9 0.0 2.8e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|154149626|ref|YP_001403244.1| - 4.9e-19 68.6 0.0 7e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154149626|ref|YP_001403244.1| - 1.1e-05 25.3 0.0 1.4e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold CMD PF02627.20 gi|154149627|ref|YP_001403245.1| - 6.4e-14 51.8 0.1 7.9e-14 51.5 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Desulfoferrod_N PF06397.12 gi|154149628|ref|YP_001403246.1| - 5.7e-18 64.2 5.6 6.7e-18 64.0 5.6 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain TF_Zn_Ribbon PF08271.12 gi|154149628|ref|YP_001403246.1| - 0.011 15.3 0.8 0.017 14.6 0.8 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding DUF3449 PF11931.8 gi|154149628|ref|YP_001403246.1| - 0.12 12.1 0.1 0.13 12.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) FMN_red PF03358.15 gi|154149629|ref|YP_001403247.1| - 2e-21 76.4 0.0 2.6e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154149629|ref|YP_001403247.1| - 5e-10 39.4 0.0 5.1e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold RadC PF04002.15 gi|154149630|ref|YP_001403248.1| - 1.4e-38 131.6 0.0 1.8e-38 131.2 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain Rubrerythrin PF02915.17 gi|154149631|ref|YP_001403249.1| - 1e-18 68.1 8.2 8.5e-18 65.1 8.2 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|154149631|ref|YP_001403249.1| - 0.00035 20.5 2.7 0.00058 19.8 2.7 1.4 1 1 0 1 1 1 1 Ferritin-like domain RecR PF02132.15 gi|154149631|ref|YP_001403249.1| - 0.0061 16.1 0.4 0.013 15.0 0.4 1.6 1 0 0 1 1 1 1 RecR protein zf_CopZ PF18423.1 gi|154149631|ref|YP_001403249.1| - 0.065 13.2 0.5 1.4 8.9 0.1 2.3 2 0 0 2 2 2 0 Zinc binding domain DUF3797 PF12677.7 gi|154149631|ref|YP_001403249.1| - 0.12 12.2 0.4 0.12 12.2 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-H2C2_2 PF13465.6 gi|154149631|ref|YP_001403249.1| - 0.25 11.8 1.6 4.9 7.8 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Zn-C2H2_12 PF18112.1 gi|154149631|ref|YP_001403249.1| - 0.6 10.6 3.5 17 6.0 0.1 2.4 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain Desulfoferrod_N PF06397.12 gi|154149631|ref|YP_001403249.1| - 0.76 9.4 5.2 0.56 9.9 0.6 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF4588 PF15251.6 gi|154149631|ref|YP_001403249.1| - 2.9 7.6 5.2 10 5.8 5.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4588) Laminin_G_3 PF13385.6 gi|154149632|ref|YP_001403250.1| - 5.8e-29 101.2 2.3 5.8e-29 101.2 2.3 1.9 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Laminin_G_2 PF02210.24 gi|154149632|ref|YP_001403250.1| - 2.2e-05 25.0 0.0 5.8e-05 23.7 0.0 1.7 2 0 0 2 2 2 1 Laminin G domain Laminin_G_1 PF00054.23 gi|154149632|ref|YP_001403250.1| - 0.024 14.9 0.0 0.054 13.7 0.0 1.6 1 0 0 1 1 1 0 Laminin G domain DUF4232 PF14016.6 gi|154149632|ref|YP_001403250.1| - 0.026 14.7 0.4 0.061 13.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4232) DUF3742 PF12553.8 gi|154149632|ref|YP_001403250.1| - 0.65 10.1 2.8 1.6 8.8 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) Pyr_redox_2 PF07992.14 gi|154149633|ref|YP_001403251.1| - 6.5e-40 137.2 2.9 1e-39 136.5 2.9 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|154149633|ref|YP_001403251.1| - 8.3e-21 74.5 2.6 1.2e-15 57.5 0.0 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.24 gi|154149633|ref|YP_001403251.1| - 1.6e-17 63.5 0.0 4.6e-17 62.0 0.0 1.9 1 0 0 1 1 1 1 Glutaredoxin Pyr_redox PF00070.27 gi|154149633|ref|YP_001403251.1| - 9e-07 29.4 4.8 2.9e-06 27.7 0.1 2.8 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|154149633|ref|YP_001403251.1| - 1.7e-06 27.7 2.0 2.9e-06 26.9 0.1 2.2 2 1 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|154149633|ref|YP_001403251.1| - 3.7e-06 26.4 3.7 9.4e-06 25.0 0.1 2.9 4 0 0 4 4 4 1 Thi4 family FAD_binding_2 PF00890.24 gi|154149633|ref|YP_001403251.1| - 4.7e-05 22.6 1.0 4.7e-05 22.6 1.0 3.6 3 1 1 4 4 4 1 FAD binding domain HI0933_like PF03486.14 gi|154149633|ref|YP_001403251.1| - 5.8e-05 22.0 3.4 0.024 13.4 0.3 3.4 3 0 0 3 3 3 1 HI0933-like protein GST_N_3 PF13417.6 gi|154149633|ref|YP_001403251.1| - 0.00014 22.2 0.0 0.00026 21.4 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain NAD_binding_8 PF13450.6 gi|154149633|ref|YP_001403251.1| - 0.00018 21.7 1.2 0.0026 18.0 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|154149633|ref|YP_001403251.1| - 0.0016 17.6 6.8 0.021 13.9 0.5 3.4 4 0 0 4 4 4 1 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|154149633|ref|YP_001403251.1| - 0.0027 16.9 0.9 0.69 9.0 0.1 2.9 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|154149633|ref|YP_001403251.1| - 0.0038 17.6 0.6 0.4 11.2 0.0 3.0 3 0 0 3 3 3 1 Putative NAD(P)-binding FMO-like PF00743.19 gi|154149633|ref|YP_001403251.1| - 0.0065 14.9 0.2 0.013 13.9 0.0 1.6 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like GST_N_2 PF13409.6 gi|154149633|ref|YP_001403251.1| - 0.011 16.0 0.0 0.02 15.2 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DSBA PF01323.20 gi|154149633|ref|YP_001403251.1| - 0.017 14.9 0.5 6.5 6.5 0.1 2.6 1 1 1 2 2 2 0 DSBA-like thioredoxin domain FAD_binding_3 PF01494.19 gi|154149633|ref|YP_001403251.1| - 0.029 13.6 0.9 0.055 12.7 0.2 1.9 2 0 0 2 2 2 0 FAD binding domain Thioredoxin_3 PF13192.6 gi|154149633|ref|YP_001403251.1| - 0.041 13.9 0.7 0.25 11.4 0.0 2.4 2 0 0 2 2 2 0 Thioredoxin domain Lycopene_cycl PF05834.12 gi|154149633|ref|YP_001403251.1| - 0.066 12.3 5.5 0.75 8.8 0.5 2.8 2 1 1 3 3 3 0 Lycopene cyclase protein DUF836 PF05768.14 gi|154149633|ref|YP_001403251.1| - 0.09 13.2 0.0 0.24 11.8 0.0 1.8 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 gi|154149633|ref|YP_001403251.1| - 0.13 12.8 0.0 0.43 11.0 0.0 1.9 2 0 0 2 2 1 0 Thioredoxin-like domain Trp_halogenase PF04820.14 gi|154149633|ref|YP_001403251.1| - 0.15 10.9 3.1 0.3 9.9 0.4 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|154149633|ref|YP_001403251.1| - 0.23 11.5 5.8 12 5.8 0.0 3.9 5 0 0 5 5 5 0 FAD-NAD(P)-binding DAO PF01266.24 gi|154149633|ref|YP_001403251.1| - 0.23 11.0 6.1 0.22 11.1 1.8 2.7 2 1 0 2 2 2 0 FAD dependent oxidoreductase CCG PF02754.16 gi|154149634|ref|YP_001403252.1| - 6.7e-30 103.1 11.9 1.1e-14 54.4 0.1 3.9 4 1 0 4 4 4 2 Cysteine-rich domain Fer2_3 PF13085.6 gi|154149634|ref|YP_001403252.1| - 1.2e-25 89.6 0.1 4.3e-25 87.8 0.0 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|154149634|ref|YP_001403252.1| - 1.1e-09 38.6 3.7 1.1e-09 38.6 3.7 2.8 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154149634|ref|YP_001403252.1| - 1.6e-09 37.8 5.9 1.6e-09 37.8 5.9 3.3 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|154149634|ref|YP_001403252.1| - 3.3e-06 27.6 6.8 3.3e-06 27.6 6.8 3.9 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154149634|ref|YP_001403252.1| - 4.5e-06 27.1 4.7 4.5e-06 27.1 4.7 3.8 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154149634|ref|YP_001403252.1| - 1.8e-05 24.8 9.9 1.8e-05 24.8 9.9 3.8 4 1 1 5 5 4 2 4Fe-4S dicluster domain Fer2_4 PF13510.6 gi|154149634|ref|YP_001403252.1| - 5.2e-05 23.2 0.5 5.2e-05 23.2 0.5 2.9 3 0 0 3 3 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.6 gi|154149634|ref|YP_001403252.1| - 0.00038 20.6 6.1 0.043 14.0 0.6 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer2 PF00111.27 gi|154149634|ref|YP_001403252.1| - 0.0007 19.5 1.1 0.0007 19.5 1.1 2.5 3 0 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 gi|154149634|ref|YP_001403252.1| - 0.0052 16.5 2.8 0.0052 16.5 2.8 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|154149634|ref|YP_001403252.1| - 0.0063 16.5 3.1 0.0063 16.5 3.1 4.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154149634|ref|YP_001403252.1| - 0.01 16.7 5.1 0.092 13.7 0.6 3.4 4 0 0 4 4 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|154149634|ref|YP_001403252.1| - 0.091 13.3 0.9 0.091 13.3 0.9 4.8 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|154149634|ref|YP_001403252.1| - 0.38 11.6 13.5 10 7.0 1.1 4.5 5 0 0 5 5 4 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154149634|ref|YP_001403252.1| - 0.84 9.8 20.1 0.25 11.5 1.0 4.3 4 1 0 4 4 4 0 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|154149635|ref|YP_001403253.1| - 1.8e-92 310.6 4.9 2.3e-92 310.3 4.9 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|154149635|ref|YP_001403253.1| - 1.7e-14 53.9 0.1 7.5e-14 51.8 0.1 1.9 1 1 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|154149635|ref|YP_001403253.1| - 3.7e-11 42.8 0.1 3e-06 26.7 0.0 2.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|154149635|ref|YP_001403253.1| - 0.00025 20.8 1.7 0.58 9.7 0.4 3.2 2 1 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|154149635|ref|YP_001403253.1| - 0.013 14.6 4.2 0.036 13.2 2.3 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|154149635|ref|YP_001403253.1| - 0.017 14.5 4.3 0.03 13.7 4.3 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|154149635|ref|YP_001403253.1| - 0.092 11.4 4.5 2.1 7.0 1.7 2.7 3 0 0 3 3 3 0 HI0933-like protein AA_kinase PF00696.28 gi|154149636|ref|YP_001403254.1| - 3.9e-49 167.4 0.1 6.8e-49 166.6 0.1 1.4 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|154149636|ref|YP_001403254.1| - 1.3e-19 69.8 1.2 1.5e-08 34.3 0.0 3.1 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|154149636|ref|YP_001403254.1| - 2.7e-16 59.0 3.4 1.4e-07 31.2 0.1 3.0 3 0 0 3 3 3 2 ACT domain AIRS_C PF02769.22 gi|154149637|ref|YP_001403255.1| - 2.6e-25 89.4 0.0 4.1e-25 88.7 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|154149637|ref|YP_001403255.1| - 5.3e-14 52.7 0.8 1.1e-13 51.7 0.8 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain CxC1 PF18802.1 gi|154149638|ref|YP_001403256.1| - 0.029 14.5 0.0 0.056 13.6 0.0 1.5 2 0 0 2 2 2 0 CxC1 like cysteine cluster associated with KDZ transposases zf-ZPR1 PF03367.13 gi|154149639|ref|YP_001403257.1| - 2.4e-38 131.5 0.0 2.7e-38 131.3 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain DUF2321 PF10083.9 gi|154149639|ref|YP_001403257.1| - 0.015 14.9 0.1 0.021 14.4 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) zinc_ribbon_2 PF13240.6 gi|154149639|ref|YP_001403257.1| - 0.25 11.1 2.9 11 5.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-Di19 PF05605.12 gi|154149639|ref|YP_001403257.1| - 0.4 11.0 1.6 17 5.8 0.6 2.4 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-ribbon_3 PF13248.6 gi|154149639|ref|YP_001403257.1| - 0.63 9.5 4.4 4.7 6.8 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain SepF PF04472.12 gi|154149640|ref|YP_001403258.1| - 7.2e-15 55.0 1.2 9.6e-15 54.6 1.2 1.2 1 0 0 1 1 1 1 Cell division protein SepF Transposase_31 PF04754.12 gi|154149640|ref|YP_001403258.1| - 0.012 15.2 0.1 0.017 14.7 0.1 1.2 1 0 0 1 1 1 0 Putative transposase, YhgA-like PUA PF01472.20 gi|154149641|ref|YP_001403259.1| - 4e-15 55.5 0.9 6.6e-15 54.8 0.9 1.4 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|154149641|ref|YP_001403259.1| - 0.00011 22.4 0.0 0.00021 21.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|154149641|ref|YP_001403259.1| - 0.00084 19.6 0.0 0.0027 17.9 0.0 1.8 2 0 0 2 2 2 1 UPF0113 PUA domain LSM PF01423.22 gi|154149642|ref|YP_001403260.1| - 3.9e-21 74.5 0.7 4.6e-21 74.3 0.7 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|154149642|ref|YP_001403260.1| - 0.0012 19.0 0.1 0.0017 18.5 0.1 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain Hfq PF17209.3 gi|154149642|ref|YP_001403260.1| - 0.041 13.5 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 Hfq protein Ribosomal_L37e PF01907.19 gi|154149643|ref|YP_001403261.1| - 3.6e-24 84.7 7.7 4.1e-24 84.5 7.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e FYVE_2 PF02318.16 gi|154149643|ref|YP_001403261.1| - 0.0061 16.8 1.8 0.0067 16.6 1.8 1.1 1 0 0 1 1 1 1 FYVE-type zinc finger DUF35_N PF12172.8 gi|154149643|ref|YP_001403261.1| - 0.0085 15.9 3.6 0.012 15.5 3.6 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|154149643|ref|YP_001403261.1| - 0.014 15.4 1.3 0.018 15.0 1.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-piccolo PF05715.13 gi|154149643|ref|YP_001403261.1| - 0.046 13.9 2.7 0.11 12.6 2.7 1.7 1 1 0 1 1 1 0 Piccolo Zn-finger Ribosomal_L32p PF01783.23 gi|154149643|ref|YP_001403261.1| - 0.078 13.3 2.6 0.15 12.3 2.6 1.5 1 1 0 1 1 1 0 Ribosomal L32p protein family MraY_sig1 PF10555.9 gi|154149643|ref|YP_001403261.1| - 3.6 7.3 7.1 0.4 10.3 1.3 2.1 2 0 0 2 2 2 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 GATase_7 PF13537.6 gi|154149644|ref|YP_001403262.1| - 1.1e-17 64.0 0.0 1.8e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|154149644|ref|YP_001403262.1| - 3e-15 56.6 0.0 6e-15 55.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|154149644|ref|YP_001403262.1| - 5.8e-08 32.0 0.0 8.1e-08 31.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|154149644|ref|YP_001403262.1| - 7.2e-05 22.4 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|154149644|ref|YP_001403262.1| - 0.03 13.7 0.4 0.062 12.7 0.0 1.6 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|154149644|ref|YP_001403262.1| - 0.034 13.6 0.0 0.082 12.4 0.0 1.7 1 0 0 1 1 1 0 Phosphoribosyl transferase Methyltransf_25 PF13649.6 gi|154149645|ref|YP_001403263.1| - 2.7e-20 72.9 0.0 5.1e-20 72.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154149645|ref|YP_001403263.1| - 1e-18 67.9 0.0 3.3e-18 66.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154149645|ref|YP_001403263.1| - 3.7e-17 62.7 0.0 8.8e-17 61.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154149645|ref|YP_001403263.1| - 6.6e-16 58.5 0.0 8.3e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|154149645|ref|YP_001403263.1| - 1.3e-12 47.6 0.0 1.7e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|154149645|ref|YP_001403263.1| - 4.6e-12 46.1 0.0 6.2e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|154149645|ref|YP_001403263.1| - 5.5e-10 38.9 0.0 6.9e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain MTS PF05175.14 gi|154149645|ref|YP_001403263.1| - 2.9e-08 33.5 0.0 5.4e-08 32.6 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain CMAS PF02353.20 gi|154149645|ref|YP_001403263.1| - 1.6e-05 24.3 0.0 2.7e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|154149645|ref|YP_001403263.1| - 0.00018 20.7 0.0 0.00026 20.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_PK PF05891.12 gi|154149645|ref|YP_001403263.1| - 0.0014 18.2 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Methyltransf_18 PF12847.7 gi|154149645|ref|YP_001403263.1| - 0.0058 16.6 0.0 0.014 15.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain NodS PF05401.11 gi|154149645|ref|YP_001403263.1| - 0.013 15.1 0.0 0.017 14.8 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|154149645|ref|YP_001403263.1| - 0.019 15.0 0.0 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|154149645|ref|YP_001403263.1| - 0.02 14.6 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_5 PF01795.19 gi|154149645|ref|YP_001403263.1| - 0.032 13.7 0.0 0.048 13.2 0.0 1.1 1 0 0 1 1 1 0 MraW methylase family PCMT PF01135.19 gi|154149645|ref|YP_001403263.1| - 0.065 13.0 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Thioredoxin PF00085.20 gi|154149646|ref|YP_001403264.1| - 1.6e-27 95.5 0.0 2.3e-27 95.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|154149646|ref|YP_001403264.1| - 2.7e-08 34.2 0.0 1.1e-06 29.0 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|154149646|ref|YP_001403264.1| - 2.7e-05 24.4 0.0 0.017 15.5 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like OST3_OST6 PF04756.13 gi|154149646|ref|YP_001403264.1| - 3.5e-05 23.3 0.0 4.5e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_9 PF14595.6 gi|154149646|ref|YP_001403264.1| - 6.4e-05 22.7 0.0 0.00012 21.9 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.21 gi|154149646|ref|YP_001403264.1| - 0.00011 22.1 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|154149646|ref|YP_001403264.1| - 0.00022 21.0 0.0 0.00028 20.6 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_6 PF13848.6 gi|154149646|ref|YP_001403264.1| - 0.00093 19.2 0.0 0.0014 18.6 0.0 1.3 2 0 0 2 2 2 1 Thioredoxin-like domain HyaE PF07449.11 gi|154149646|ref|YP_001403264.1| - 0.018 15.0 0.0 0.049 13.6 0.0 1.7 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.6 gi|154149646|ref|YP_001403264.1| - 0.021 15.0 0.0 0.048 13.8 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like Mt_ATP-synt_D PF05873.12 gi|154149646|ref|YP_001403264.1| - 0.057 13.3 0.0 0.098 12.5 0.0 1.4 1 0 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) EF-1_beta_acid PF10587.9 gi|154149646|ref|YP_001403264.1| - 0.084 13.3 0.6 0.084 13.3 0.6 1.9 2 0 0 2 2 2 0 Eukaryotic elongation factor 1 beta central acidic region OCC1 PF15506.6 gi|154149647|ref|YP_001403265.1| - 0.0044 17.1 1.2 0.0063 16.6 1.2 1.2 1 0 0 1 1 1 1 OCC1 family Ribosomal_60s PF00428.19 gi|154149647|ref|YP_001403265.1| - 0.7 10.5 5.6 1.1 9.9 5.6 1.4 1 0 0 1 1 1 0 60s Acidic ribosomal protein CRPA PF05745.11 gi|154149648|ref|YP_001403266.1| - 0.0082 16.2 2.0 2.4 8.2 0.1 2.2 2 0 0 2 2 2 2 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF2964 PF11177.8 gi|154149648|ref|YP_001403266.1| - 0.034 14.3 3.6 0.067 13.4 3.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2964) DUF5556 PF17711.1 gi|154149648|ref|YP_001403266.1| - 0.061 13.3 0.0 0.09 12.7 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5556) Trp_oprn_chp PF09534.10 gi|154149648|ref|YP_001403266.1| - 0.19 11.5 4.0 4.3 7.1 4.0 2.0 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3040 PF11239.8 gi|154149648|ref|YP_001403266.1| - 1.5 9.2 11.3 4.4 7.6 11.6 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) AMP-binding PF00501.28 gi|154149649|ref|YP_001403267.1| - 3.8e-102 342.0 0.0 4.7e-102 341.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|154149649|ref|YP_001403267.1| - 2.2e-19 70.2 4.0 2.9e-19 69.8 2.3 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ATPase PF06745.13 gi|154149650|ref|YP_001403268.1| - 2.1e-14 53.4 6.5 8.3e-09 35.1 1.7 2.0 1 1 1 2 2 2 2 KaiC GvpD PF07088.11 gi|154149650|ref|YP_001403268.1| - 0.0028 16.3 0.3 0.023 13.3 0.1 1.9 2 0 0 2 2 2 1 GvpD gas vesicle protein PAXNEB PF05625.11 gi|154149650|ref|YP_001403268.1| - 0.004 16.4 0.1 1.8 7.6 0.0 2.1 2 0 0 2 2 2 2 PAXNEB protein DUF835 PF05763.12 gi|154149650|ref|YP_001403268.1| - 0.018 14.7 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF835) RecA PF00154.21 gi|154149650|ref|YP_001403268.1| - 0.043 13.3 0.2 0.14 11.6 0.1 1.9 3 0 0 3 3 3 0 recA bacterial DNA recombination protein FecCD PF01032.18 gi|154149651|ref|YP_001403269.1| - 0.022 13.8 0.6 0.027 13.5 0.6 1.2 1 0 0 1 1 1 0 FecCD transport family Ost4 PF10215.9 gi|154149651|ref|YP_001403269.1| - 0.043 13.7 0.4 0.072 12.9 0.4 1.3 1 0 0 1 1 1 0 Oligosaccaryltransferase VAPB_antitox PF02697.14 gi|154149652|ref|YP_001403270.1| - 0.0039 17.9 0.3 0.0059 17.3 0.3 1.5 1 1 0 1 1 1 1 Putative antitoxin Meth_synt_2 PF01717.18 gi|154149653|ref|YP_001403271.1| - 1.9e-46 158.9 1.1 2.2e-44 152.0 1.1 2.8 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|154149653|ref|YP_001403271.1| - 1.1e-05 25.1 0.0 1.9e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|154149653|ref|YP_001403271.1| - 7.8e-05 22.0 0.0 0.0001 21.6 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) tRNA-synt_2 PF00152.20 gi|154149654|ref|YP_001403272.1| - 6.4e-89 298.1 0.0 7.6e-89 297.9 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|154149654|ref|YP_001403272.1| - 9.1e-14 51.2 0.2 1.7e-13 50.3 0.2 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|154149654|ref|YP_001403272.1| - 0.0022 17.5 0.4 0.054 13.0 0.1 2.2 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) FixH PF05751.11 gi|154149655|ref|YP_001403273.1| - 0.1 12.6 0.8 3.9 7.5 0.7 2.2 2 0 0 2 2 2 0 FixH AMP-binding PF00501.28 gi|154149656|ref|YP_001403274.1| - 1.6e-14 53.3 0.0 2.5e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme SIS_2 PF13580.6 gi|154149656|ref|YP_001403274.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 SIS domain Sulphotransf PF09037.10 gi|154149656|ref|YP_001403274.1| - 0.17 11.4 0.1 6.1 6.3 0.0 2.2 2 0 0 2 2 2 0 Stf0 sulphotransferase B12-binding PF02310.19 gi|154149657|ref|YP_001403275.1| - 7.3e-22 77.7 0.0 1.4e-21 76.7 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|154149657|ref|YP_001403275.1| - 3.4e-07 30.6 0.1 9.4e-07 29.2 0.1 1.8 1 0 0 1 1 1 1 B12 binding domain PPK2 PF03976.14 gi|154149658|ref|YP_001403276.1| - 1.4e-61 207.9 0.2 3.1e-61 206.8 0.2 1.5 1 1 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) Bac_export_2 PF01312.19 gi|154149659|ref|YP_001403277.1| - 0.64 9.2 9.8 0.79 8.9 9.8 1.1 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family MASE1 PF05231.14 gi|154149659|ref|YP_001403277.1| - 0.88 8.7 29.4 1.4 8.0 29.4 1.3 1 1 0 1 1 1 0 MASE1 RuvC PF02075.17 gi|154149660|ref|YP_001403278.1| - 1.1e-51 174.6 0.0 1.2e-51 174.5 0.0 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC LPD7 PF18821.1 gi|154149660|ref|YP_001403278.1| - 0.069 13.3 0.0 0.15 12.2 0.0 1.6 1 1 0 1 1 1 0 Large polyvalent protein-associated domain 7 RuvA_N PF01330.21 gi|154149661|ref|YP_001403279.1| - 4.7e-22 77.8 0.2 4.7e-21 74.7 0.0 2.1 2 0 0 2 2 2 1 RuvA N terminal domain HHH_5 PF14520.6 gi|154149661|ref|YP_001403279.1| - 4.1e-16 59.3 0.6 4.1e-16 59.3 0.6 2.9 3 1 0 3 3 3 1 Helix-hairpin-helix domain RuvA_C PF07499.13 gi|154149661|ref|YP_001403279.1| - 2.1e-07 31.3 4.4 3.7e-07 30.5 4.4 1.4 1 0 0 1 1 1 1 RuvA, C-terminal domain 5_3_exonuc PF01367.20 gi|154149661|ref|YP_001403279.1| - 0.00042 20.9 0.4 0.59 10.8 0.0 2.5 1 1 1 2 2 2 2 5'-3' exonuclease, C-terminal SAM fold DNA_pol_lambd_f PF10391.9 gi|154149661|ref|YP_001403279.1| - 0.011 15.6 0.0 0.83 9.5 0.0 2.5 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda HHH_3 PF12836.7 gi|154149661|ref|YP_001403279.1| - 0.019 15.2 0.3 0.89 9.9 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH PF00633.23 gi|154149661|ref|YP_001403279.1| - 0.024 14.5 0.8 5.4 7.1 0.1 2.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif Transposase_20 PF02371.16 gi|154149661|ref|YP_001403279.1| - 0.053 13.8 0.1 5 7.5 0.0 2.5 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family RuvB_N PF05496.12 gi|154149662|ref|YP_001403280.1| - 1.4e-76 255.6 0.1 2e-76 255.1 0.1 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_4 PF17864.1 gi|154149662|ref|YP_001403280.1| - 7.5e-32 108.9 0.3 1.8e-31 107.7 0.3 1.7 1 0 0 1 1 1 1 RuvB AAA lid domain RuvB_C PF05491.13 gi|154149662|ref|YP_001403280.1| - 1.2e-23 82.7 0.0 2.3e-23 81.8 0.0 1.5 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain AAA PF00004.29 gi|154149662|ref|YP_001403280.1| - 8.6e-17 61.8 0.0 1.6e-16 60.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|154149662|ref|YP_001403280.1| - 4.2e-10 39.8 0.1 5.6e-08 32.9 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|154149662|ref|YP_001403280.1| - 1.8e-07 30.7 1.2 9.5e-05 21.9 0.1 3.1 1 1 2 3 3 3 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|154149662|ref|YP_001403280.1| - 3.9e-06 26.3 2.0 2.7e-05 23.6 0.0 2.5 3 0 0 3 3 3 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|154149662|ref|YP_001403280.1| - 7.2e-05 23.2 0.0 0.00054 20.4 0.1 2.2 1 1 1 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.15 gi|154149662|ref|YP_001403280.1| - 0.00047 20.1 0.2 0.11 12.4 0.0 2.4 1 1 1 2 2 2 1 NTPase Sigma54_activat PF00158.26 gi|154149662|ref|YP_001403280.1| - 0.00072 19.3 0.0 0.4 10.4 0.0 2.2 1 1 1 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|154149662|ref|YP_001403280.1| - 0.00075 19.4 0.1 0.036 13.9 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|154149662|ref|YP_001403280.1| - 0.0034 17.8 0.0 0.0052 17.2 0.0 1.3 1 0 0 1 1 1 1 RNA helicase AAA_2 PF07724.14 gi|154149662|ref|YP_001403280.1| - 0.0047 17.1 0.0 0.03 14.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) Bac_DnaA PF00308.18 gi|154149662|ref|YP_001403280.1| - 0.0049 16.7 0.0 0.08 12.8 0.1 2.4 2 1 0 2 2 2 1 Bacterial dnaA protein MCM PF00493.23 gi|154149662|ref|YP_001403280.1| - 0.0068 15.5 0.0 0.1 11.6 0.0 2.1 1 1 0 1 1 1 1 MCM P-loop domain Rad17 PF03215.15 gi|154149662|ref|YP_001403280.1| - 0.0084 16.0 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|154149662|ref|YP_001403280.1| - 0.0091 16.5 0.0 0.016 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|154149662|ref|YP_001403280.1| - 0.0094 16.2 0.3 1.4 9.2 0.0 2.4 1 1 1 2 2 2 1 AAA domain TsaE PF02367.17 gi|154149662|ref|YP_001403280.1| - 0.024 14.7 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|154149662|ref|YP_001403280.1| - 0.024 14.8 0.0 0.044 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|154149662|ref|YP_001403280.1| - 0.029 13.6 0.0 0.72 9.0 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF815) AAA_32 PF13654.6 gi|154149662|ref|YP_001403280.1| - 0.045 12.5 0.0 0.06 12.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|154149662|ref|YP_001403280.1| - 0.056 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.12 gi|154149662|ref|YP_001403280.1| - 0.065 13.1 0.0 0.2 11.6 0.0 1.8 2 0 0 2 2 2 0 NACHT domain ResIII PF04851.15 gi|154149662|ref|YP_001403280.1| - 0.067 13.2 0.0 12 5.9 0.0 2.2 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_14 PF13173.6 gi|154149662|ref|YP_001403280.1| - 0.07 13.2 0.0 0.2 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|154149662|ref|YP_001403280.1| - 0.096 13.0 0.5 5.4 7.3 0.1 2.4 1 1 1 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|154149662|ref|YP_001403280.1| - 0.098 12.4 1.4 0.5 10.1 0.2 2.4 2 1 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|154149662|ref|YP_001403280.1| - 0.13 12.7 0.0 0.36 11.3 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_25 PF13481.6 gi|154149662|ref|YP_001403280.1| - 0.15 11.6 0.4 0.73 9.4 0.3 2.0 1 1 1 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|154149662|ref|YP_001403280.1| - 0.15 11.2 0.0 0.46 9.6 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_17 PF13207.6 gi|154149662|ref|YP_001403280.1| - 0.17 12.3 0.0 0.34 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF1211 PF06736.11 gi|154149663|ref|YP_001403281.1| - 1.2e-23 83.4 7.8 1.2e-23 83.4 7.8 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF1211) AA_permease_2 PF13520.6 gi|154149663|ref|YP_001403281.1| - 0.0028 16.6 8.4 0.0028 16.6 8.4 1.8 1 1 0 1 1 1 1 Amino acid permease FA_desaturase PF00487.24 gi|154149663|ref|YP_001403281.1| - 6.9 6.4 17.1 3.7e+02 0.8 17.1 2.2 1 1 0 1 1 1 0 Fatty acid desaturase HEAT_2 PF13646.6 gi|154149664|ref|YP_001403282.1| - 1.9e-63 210.8 12.5 4.6e-20 71.8 0.2 5.3 1 1 3 5 5 5 5 HEAT repeats HEAT PF02985.22 gi|154149664|ref|YP_001403282.1| - 6.9e-37 122.3 0.1 0.033 14.4 0.0 10.8 11 0 0 11 11 11 8 HEAT repeat HEAT_PBS PF03130.16 gi|154149664|ref|YP_001403282.1| - 1.8e-36 121.0 23.6 1.4e-07 31.5 0.1 11.5 12 0 0 12 12 12 9 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|154149664|ref|YP_001403282.1| - 1.7e-15 57.1 19.6 0.4 11.2 0.1 10.6 9 3 1 10 10 10 3 HEAT-like repeat Cnd1 PF12717.7 gi|154149664|ref|YP_001403282.1| - 1.9e-14 54.0 0.0 0.0033 17.5 0.1 7.0 3 2 4 7 7 7 3 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|154149664|ref|YP_001403282.1| - 3.4e-13 49.1 9.6 0.0056 16.7 0.0 9.6 4 3 7 11 11 10 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|154149664|ref|YP_001403282.1| - 1.3e-09 37.2 0.0 0.047 12.3 0.0 3.5 2 1 0 3 3 3 3 Adaptin N terminal region Aconitase_B_N PF11791.8 gi|154149664|ref|YP_001403282.1| - 1.7e-06 28.2 1.1 5.1 7.2 0.1 6.0 1 1 5 7 7 7 2 Aconitate B N-terminal domain BRCC36_C PF18110.1 gi|154149664|ref|YP_001403282.1| - 0.00028 21.0 1.3 0.13 12.5 0.1 4.8 4 1 1 5 5 5 1 BRCC36 C-terminal helical domain RTP1_C1 PF10363.9 gi|154149664|ref|YP_001403282.1| - 0.00032 20.8 0.0 2.1 8.6 0.0 4.2 3 1 1 5 5 5 1 Required for nuclear transport of RNA pol II C-terminus 1 GlutR_dimer PF00745.20 gi|154149664|ref|YP_001403282.1| - 0.00046 20.6 0.0 37 4.9 0.0 5.2 1 1 5 6 6 6 0 Glutamyl-tRNAGlu reductase, dimerisation domain Vac14_Fab1_bd PF12755.7 gi|154149664|ref|YP_001403282.1| - 0.0021 18.6 0.0 18 6.0 0.0 5.0 2 1 1 5 5 5 0 Vacuolar 14 Fab1-binding region RasGEF_N_2 PF14663.6 gi|154149664|ref|YP_001403282.1| - 0.025 15.0 0.6 67 3.9 0.0 4.5 3 2 2 5 5 5 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain NIL PF09383.10 gi|154149664|ref|YP_001403282.1| - 0.028 14.3 0.1 0.41 10.5 0.0 3.1 3 0 0 3 3 3 0 NIL domain LD_cluster3 PF18180.1 gi|154149664|ref|YP_001403282.1| - 0.061 12.9 3.3 27 4.3 0.0 4.7 3 3 4 7 7 7 0 SLOG cluster3 family CLASP_N PF12348.8 gi|154149664|ref|YP_001403282.1| - 0.27 10.8 0.6 52 3.3 0.0 3.8 3 2 0 4 4 4 0 CLASP N terminal PEGA PF08308.11 gi|154149665|ref|YP_001403283.1| - 1e-10 41.3 0.1 1e-10 41.3 0.1 3.5 5 1 1 6 6 6 1 PEGA domain CarboxypepD_reg PF13620.6 gi|154149665|ref|YP_001403283.1| - 0.022 15.0 11.5 0.41 11.0 0.2 4.6 3 2 1 5 5 5 0 Carboxypeptidase regulatory-like domain MG2 PF01835.19 gi|154149665|ref|YP_001403283.1| - 0.088 13.3 0.1 0.69 10.4 0.0 2.4 2 0 0 2 2 2 0 MG2 domain BsuPI PF12690.7 gi|154149665|ref|YP_001403283.1| - 0.12 12.4 0.4 4.4 7.4 0.0 2.8 3 1 0 3 3 3 0 Intracellular proteinase inhibitor C6 PF01681.17 gi|154149665|ref|YP_001403283.1| - 3.3 8.3 15.4 0.14 12.7 0.8 3.3 1 1 1 3 3 3 0 C6 domain UPF0052 PF01933.18 gi|154149666|ref|YP_001403284.1| - 5.7e-52 176.8 0.1 6.7e-52 176.5 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 VbhA PF18495.1 gi|154149666|ref|YP_001403284.1| - 0.13 12.2 0.6 0.52 10.2 0.1 2.2 2 0 0 2 2 2 0 Antitoxin VbhA HD PF01966.22 gi|154149667|ref|YP_001403285.1| - 4.5e-13 49.5 0.3 1e-12 48.3 0.3 1.7 1 0 0 1 1 1 1 HD domain OSK PF17182.4 gi|154149669|ref|YP_001403287.1| - 0.012 14.9 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 0 OSK domain EphA2_TM PF14575.6 gi|154149669|ref|YP_001403287.1| - 0.16 12.8 0.3 0.3 12.0 0.3 1.7 1 1 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain Flavoprotein PF02441.19 gi|154149670|ref|YP_001403288.1| - 3.2e-28 98.5 0.1 4.1e-28 98.1 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein UbiD PF01977.16 gi|154149671|ref|YP_001403289.1| - 4.5e-97 325.5 1.7 5.2e-97 325.3 1.7 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF521 PF04412.13 gi|154149672|ref|YP_001403290.1| - 1.2e-149 498.4 0.0 1.4e-149 498.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF1646 PF07854.12 gi|154149673|ref|YP_001403291.1| - 2.8e-126 421.6 27.8 3.3e-126 421.3 27.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) HEAT_2 PF13646.6 gi|154149674|ref|YP_001403292.1| - 8.1e-17 61.4 5.5 2.4e-07 31.0 0.1 2.5 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.16 gi|154149674|ref|YP_001403292.1| - 3.4e-09 36.5 5.4 0.00095 19.6 0.0 5.2 5 1 0 5 5 5 2 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|154149674|ref|YP_001403292.1| - 0.0036 17.4 0.2 7 7.2 0.0 4.0 4 0 0 4 4 4 1 HEAT repeat GUN4_N PF16416.5 gi|154149674|ref|YP_001403292.1| - 0.0097 15.9 0.0 1.4 8.9 0.0 2.4 2 0 0 2 2 2 1 ARM-like repeat domain, GUN4-N terminal HEAT_EZ PF13513.6 gi|154149674|ref|YP_001403292.1| - 0.12 12.9 3.1 2.7 8.6 0.0 3.4 3 1 0 3 3 3 0 HEAT-like repeat Cnd1 PF12717.7 gi|154149674|ref|YP_001403292.1| - 0.21 11.6 0.0 0.5 10.4 0.0 1.6 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 PolC_DP2 PF03833.13 gi|154149675|ref|YP_001403293.1| - 0 1269.3 0.0 0 1268.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|154149675|ref|YP_001403293.1| - 1.9e-07 31.1 0.0 5.7e-07 29.6 0.0 1.8 1 0 0 1 1 1 1 Intein splicing domain zinc-ribbons_6 PF07191.12 gi|154149675|ref|YP_001403293.1| - 7.5 6.6 16.5 17 5.4 0.1 3.0 3 1 0 3 3 3 0 zinc-ribbons Big_1 PF02369.16 gi|154149676|ref|YP_001403294.1| - 6.5e-07 29.3 52.4 0.0001 22.3 7.0 8.4 7 2 0 7 7 7 3 Bacterial Ig-like domain (group 1) VWA_2 PF13519.6 gi|154149676|ref|YP_001403294.1| - 7.5e-05 23.3 0.1 0.0071 17.0 0.0 2.7 2 0 0 2 2 2 1 von Willebrand factor type A domain Invasin_D3 PF09134.10 gi|154149676|ref|YP_001403294.1| - 0.0018 18.5 37.7 0.11 12.8 2.4 5.1 5 0 0 5 5 5 3 Invasin, domain 3 DUF824 PF05688.11 gi|154149676|ref|YP_001403294.1| - 0.011 15.5 0.2 0.011 15.5 0.2 3.9 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) HisG PF01634.18 gi|154149683|ref|YP_001403301.1| - 6.7e-43 146.4 0.0 9.4e-43 145.9 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|154149683|ref|YP_001403301.1| - 3.3e-23 81.6 0.2 8.9e-23 80.2 0.2 1.8 1 0 0 1 1 1 1 HisG, C-terminal domain DUF1015 PF06245.11 gi|154149684|ref|YP_001403302.1| - 2.5e-106 355.8 0.0 2.9e-106 355.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) Acetyltransf_1 PF00583.25 gi|154149685|ref|YP_001403303.1| - 1.3e-15 57.7 0.1 1.6e-15 57.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|154149685|ref|YP_001403303.1| - 1.7e-15 57.1 0.0 2e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|154149685|ref|YP_001403303.1| - 1e-12 48.3 0.2 1.5e-12 47.7 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|154149685|ref|YP_001403303.1| - 1.6e-07 31.2 0.0 2.4e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|154149685|ref|YP_001403303.1| - 0.0021 18.1 0.0 0.016 15.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|154149685|ref|YP_001403303.1| - 0.047 13.8 0.0 0.061 13.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|154149685|ref|YP_001403303.1| - 0.14 12.8 0.0 0.52 11.0 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain HMG-CoA_red PF00368.18 gi|154149686|ref|YP_001403304.1| - 8.4e-125 416.6 15.5 9.6e-125 416.4 15.5 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase vWF_A PF12450.8 gi|154149686|ref|YP_001403304.1| - 0.15 12.0 0.1 1.2 9.1 0.0 2.1 1 1 1 2 2 2 0 von Willebrand factor Met_10 PF02475.16 gi|154149687|ref|YP_001403305.1| - 8.8e-45 152.9 0.0 1.1e-44 152.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|154149687|ref|YP_001403305.1| - 1.3e-11 44.2 0.0 2.3e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|154149687|ref|YP_001403305.1| - 1.4e-06 28.9 0.0 3e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|154149687|ref|YP_001403305.1| - 1.8e-05 24.5 0.0 3.2e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltr_RsmB-F PF01189.17 gi|154149687|ref|YP_001403305.1| - 3.2e-05 23.7 0.0 6.1e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|154149687|ref|YP_001403305.1| - 5.1e-05 22.9 0.0 0.00011 21.8 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|154149687|ref|YP_001403305.1| - 0.00074 19.4 0.0 0.0022 17.8 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154149687|ref|YP_001403305.1| - 0.0013 19.3 0.0 0.0059 17.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|154149687|ref|YP_001403305.1| - 0.0052 16.2 0.0 0.0071 15.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|154149687|ref|YP_001403305.1| - 0.0057 16.4 0.0 0.0083 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|154149687|ref|YP_001403305.1| - 0.06 12.8 0.0 0.14 11.6 0.0 1.7 1 1 0 1 1 1 0 Putative methyltransferase Methyltransf_15 PF09445.10 gi|154149687|ref|YP_001403305.1| - 0.06 12.9 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.11 gi|154149687|ref|YP_001403305.1| - 0.076 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase ADH_zinc_N PF00107.26 gi|154149687|ref|YP_001403305.1| - 0.11 12.4 0.0 1.5 8.8 0.0 2.5 1 1 0 1 1 1 0 Zinc-binding dehydrogenase eIF-1a PF01176.19 gi|154149689|ref|YP_001403307.1| - 7.7e-20 70.5 0.2 1.3e-19 69.8 0.2 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 PsiE PF06146.12 gi|154149690|ref|YP_001403308.1| - 2.1e-19 69.7 9.1 2.1e-19 69.7 9.1 1.6 2 0 0 2 2 2 1 Phosphate-starvation-inducible E Rnf-Nqr PF02508.14 gi|154149690|ref|YP_001403308.1| - 0.26 11.2 17.3 0.071 13.1 3.4 2.2 1 1 1 2 2 2 0 Rnf-Nqr subunit, membrane protein DUF4229 PF14012.6 gi|154149690|ref|YP_001403308.1| - 3.3 7.9 13.8 2.1 8.5 3.3 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF4229) MarR PF01047.22 gi|154149691|ref|YP_001403309.1| - 2e-10 40.4 0.1 5.4e-10 39.1 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|154149691|ref|YP_001403309.1| - 3.5e-09 36.4 0.1 4.7e-08 32.8 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|154149691|ref|YP_001403309.1| - 9.6e-07 29.2 0.1 3.2e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|154149691|ref|YP_001403309.1| - 4.5e-06 26.1 0.1 5.6e-05 22.6 0.0 2.8 4 0 0 4 4 4 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|154149691|ref|YP_001403309.1| - 4.9e-06 26.6 0.1 1.7e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|154149691|ref|YP_001403309.1| - 0.0044 16.8 0.0 0.021 14.6 0.0 2.1 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_1 PF00126.27 gi|154149691|ref|YP_001403309.1| - 0.011 15.6 0.2 0.26 11.3 0.0 2.6 2 1 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_AsnC-type PF13404.6 gi|154149691|ref|YP_001403309.1| - 0.012 15.4 0.1 0.5 10.2 0.0 3.2 3 1 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|154149691|ref|YP_001403309.1| - 0.023 14.1 0.5 0.22 11.0 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 RuvB_C PF05491.13 gi|154149691|ref|YP_001403309.1| - 0.074 12.9 0.1 0.4 10.6 0.0 2.0 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain KIP1 PF07765.12 gi|154149691|ref|YP_001403309.1| - 0.12 12.5 0.1 0.46 10.6 0.0 1.8 2 0 0 2 2 2 0 KIP1-like protein Lon_C PF05362.13 gi|154149692|ref|YP_001403310.1| - 4.7e-85 284.3 1.0 8e-85 283.5 1.0 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.29 gi|154149692|ref|YP_001403310.1| - 9.9e-23 81.0 0.0 3.1e-22 79.4 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ChlI PF13541.6 gi|154149692|ref|YP_001403310.1| - 3.3e-10 39.9 0.0 6.8e-10 38.8 0.0 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.14 gi|154149692|ref|YP_001403310.1| - 8.7e-10 38.7 0.0 8.5e-09 35.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) LON_substr_bdg PF02190.16 gi|154149692|ref|YP_001403310.1| - 1.8e-08 34.5 0.0 3.8e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain AAA_16 PF13191.6 gi|154149692|ref|YP_001403310.1| - 4.1e-06 27.3 0.1 2.9e-05 24.5 0.1 2.2 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|154149692|ref|YP_001403310.1| - 2.3e-05 24.2 0.3 0.0001 22.1 0.0 2.2 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|154149692|ref|YP_001403310.1| - 8.2e-05 22.8 0.0 0.00023 21.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|154149692|ref|YP_001403310.1| - 9.4e-05 22.7 0.0 0.0013 19.0 0.0 2.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|154149692|ref|YP_001403310.1| - 0.00012 21.8 0.0 0.00029 20.6 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|154149692|ref|YP_001403310.1| - 0.0006 20.4 2.2 0.043 14.4 0.1 3.3 3 0 0 3 3 3 1 AAA domain AAA_PrkA PF08298.11 gi|154149692|ref|YP_001403310.1| - 0.00093 18.2 0.0 0.0016 17.4 0.0 1.2 1 0 0 1 1 1 1 PrkA AAA domain AAA_33 PF13671.6 gi|154149692|ref|YP_001403310.1| - 0.00097 19.3 0.4 0.0035 17.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|154149692|ref|YP_001403310.1| - 0.002 18.1 0.0 0.0041 17.1 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain TIP49 PF06068.13 gi|154149692|ref|YP_001403310.1| - 0.0027 16.9 0.1 0.0079 15.4 0.0 1.7 2 0 0 2 2 2 1 TIP49 P-loop domain Birna_VP4 PF01768.16 gi|154149692|ref|YP_001403310.1| - 0.0082 16.0 0.2 0.024 14.5 0.2 1.7 1 0 0 1 1 1 1 Birnavirus VP4 protein Viral_helicase1 PF01443.18 gi|154149692|ref|YP_001403310.1| - 0.0096 15.7 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase TsaE PF02367.17 gi|154149692|ref|YP_001403310.1| - 0.027 14.4 0.5 0.07 13.1 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|154149692|ref|YP_001403310.1| - 0.028 14.1 0.2 0.1 12.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|154149692|ref|YP_001403310.1| - 0.029 14.2 0.0 0.11 12.4 0.0 2.0 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|154149692|ref|YP_001403310.1| - 0.068 13.6 0.0 0.23 11.9 0.0 1.9 2 0 0 2 2 1 0 RNA helicase NTPase_1 PF03266.15 gi|154149692|ref|YP_001403310.1| - 0.07 13.0 2.5 0.52 10.2 0.1 3.3 2 1 2 4 4 4 0 NTPase Zeta_toxin PF06414.12 gi|154149692|ref|YP_001403310.1| - 0.08 12.2 0.1 0.18 11.1 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|154149692|ref|YP_001403310.1| - 0.094 12.6 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase SKI PF01202.22 gi|154149692|ref|YP_001403310.1| - 0.095 12.8 0.3 0.36 10.9 0.1 2.0 2 0 0 2 2 2 0 Shikimate kinase DUF815 PF05673.13 gi|154149692|ref|YP_001403310.1| - 0.1 11.8 0.0 0.23 10.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|154149692|ref|YP_001403310.1| - 0.11 12.0 0.1 0.32 10.5 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_11 PF13086.6 gi|154149692|ref|YP_001403310.1| - 0.11 12.3 1.6 0.24 11.1 0.1 2.0 1 1 1 2 2 2 0 AAA domain NACHT PF05729.12 gi|154149692|ref|YP_001403310.1| - 0.14 12.1 0.0 1.9 8.4 0.0 2.3 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|154149692|ref|YP_001403310.1| - 0.15 12.1 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|154149692|ref|YP_001403310.1| - 0.19 10.8 0.0 0.33 10.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Cytidylate_kin PF02224.18 gi|154149692|ref|YP_001403310.1| - 0.26 11.0 0.9 0.72 9.5 0.1 2.0 2 0 0 2 2 2 0 Cytidylate kinase NB-ARC PF00931.22 gi|154149692|ref|YP_001403310.1| - 0.44 9.7 1.2 0.6 9.2 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain OKR_DC_1 PF01276.20 gi|154149693|ref|YP_001403311.1| - 2e-164 547.3 0.0 2.5e-164 547.0 0.0 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain OKR_DC_1_C PF03711.15 gi|154149693|ref|YP_001403311.1| - 1.3e-44 151.7 0.0 2.8e-44 150.6 0.0 1.5 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, C-terminal domain OKR_DC_1_N PF03709.15 gi|154149693|ref|YP_001403311.1| - 4.7e-27 94.5 0.1 9.6e-27 93.5 0.1 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain Beta_elim_lyase PF01212.21 gi|154149693|ref|YP_001403311.1| - 0.02 14.2 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase AA_permease_2 PF13520.6 gi|154149694|ref|YP_001403312.1| - 9.9e-57 192.7 56.9 1.3e-56 192.3 56.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|154149694|ref|YP_001403312.1| - 8.7e-19 67.5 45.9 1.2e-18 67.0 45.9 1.2 1 0 0 1 1 1 1 Amino acid permease DUF3112 PF11309.8 gi|154149694|ref|YP_001403312.1| - 0.088 12.2 4.3 0.34 10.3 0.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3112) TIC20 PF16166.5 gi|154149696|ref|YP_001403314.1| - 0.22 11.3 1.7 0.75 9.5 0.6 2.0 1 1 1 2 2 2 0 Chloroplast import apparatus Tic20-like Kinocilin PF15033.6 gi|154149696|ref|YP_001403314.1| - 0.93 9.2 3.7 0.62 9.7 0.5 2.2 2 0 0 2 2 2 0 Kinocilin protein DUF2371 PF10177.9 gi|154149696|ref|YP_001403314.1| - 1.2 9.3 3.9 3.3 7.9 0.3 2.6 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) Abhydrolase_1 PF00561.20 gi|154149697|ref|YP_001403315.1| - 4.3e-27 95.4 0.0 8.2e-20 71.5 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|154149697|ref|YP_001403315.1| - 8.4e-19 69.1 1.7 9.8e-19 68.8 1.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|154149697|ref|YP_001403315.1| - 7.6e-15 54.8 0.0 2.1e-14 53.4 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|154149697|ref|YP_001403315.1| - 7e-05 22.9 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein FSH1 PF03959.13 gi|154149697|ref|YP_001403315.1| - 0.00021 21.0 0.0 0.0012 18.5 0.0 1.9 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Peptidase_S9 PF00326.21 gi|154149697|ref|YP_001403315.1| - 0.0048 16.4 0.0 0.034 13.6 0.0 2.0 2 0 0 2 2 2 1 Prolyl oligopeptidase family Esterase_phd PF10503.9 gi|154149697|ref|YP_001403315.1| - 0.054 13.0 0.0 4.4 6.7 0.0 2.3 1 1 0 2 2 2 0 Esterase PHB depolymerase Abhydrolase_2 PF02230.16 gi|154149697|ref|YP_001403315.1| - 0.15 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase Ndr PF03096.14 gi|154149697|ref|YP_001403315.1| - 0.16 10.7 0.0 0.2 10.3 0.0 1.1 1 0 0 1 1 1 0 Ndr family DUF3413 PF11893.8 gi|154149698|ref|YP_001403316.1| - 0.0056 15.9 1.7 0.034 13.3 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF3413) BNR_4 PF15892.5 gi|154149699|ref|YP_001403317.1| - 5.1e-10 39.2 7.4 0.2 11.0 0.5 6.8 4 3 4 8 8 8 4 BNR repeat-containing family member Inhibitor_I42 PF09394.10 gi|154149699|ref|YP_001403317.1| - 0.0036 17.7 2.0 0.066 13.6 0.0 3.1 2 0 0 2 2 2 1 Chagasin family peptidase inhibitor I42 DUF2690 PF10901.8 gi|154149699|ref|YP_001403317.1| - 0.006 16.9 0.0 28 5.1 0.0 4.2 4 0 0 4 4 4 1 Protein of unknown function (DUF2690) DUF4988 PF16378.5 gi|154149699|ref|YP_001403317.1| - 0.66 9.6 5.6 74 2.9 0.1 4.5 2 1 3 6 6 6 0 Domain of unknown function HicA_toxin PF07927.12 gi|154149700|ref|YP_001403318.1| - 6.7e-15 54.9 0.1 9e-15 54.5 0.1 1.2 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|154149701|ref|YP_001403319.1| - 7.3e-06 26.1 0.0 7.8e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF5623 PF18536.1 gi|154149701|ref|YP_001403319.1| - 0.066 13.5 0.0 0.071 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5623) SHNi-TPR PF10516.9 gi|154149701|ref|YP_001403319.1| - 0.096 12.2 0.1 0.14 11.6 0.1 1.2 1 0 0 1 1 1 0 SHNi-TPR PHD_like PF12910.7 gi|154149701|ref|YP_001403319.1| - 0.11 12.5 0.1 0.13 12.2 0.1 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system Mrr_cat PF04471.12 gi|154149702|ref|YP_001403320.1| - 2.7e-30 104.7 1.3 1.2e-29 102.6 0.0 2.1 2 0 0 2 2 2 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|154149702|ref|YP_001403320.1| - 6.4e-12 45.5 1.2 9.4e-12 44.9 0.3 1.7 1 1 1 2 2 2 1 Restriction endonuclease MTES_1575 PF18741.1 gi|154149702|ref|YP_001403320.1| - 0.001 19.2 1.4 0.0019 18.3 0.0 2.2 2 1 0 2 2 2 1 REase_MTES_1575 DZR PF12773.7 gi|154149702|ref|YP_001403320.1| - 0.011 15.8 3.4 0.024 14.7 3.4 1.6 1 0 0 1 1 1 0 Double zinc ribbon TackOD1 PF18551.1 gi|154149702|ref|YP_001403320.1| - 0.018 14.7 5.8 0.035 13.8 5.8 1.5 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-ribbon_3 PF13248.6 gi|154149702|ref|YP_001403320.1| - 0.13 11.7 2.2 9.3 5.8 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|154149702|ref|YP_001403320.1| - 0.26 12.1 8.8 0.79 10.5 8.8 2.1 1 1 0 1 1 1 0 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|154149702|ref|YP_001403320.1| - 0.58 9.9 5.8 2.2 8.1 0.4 2.6 2 0 0 2 2 2 0 zinc-ribbon domain GIT1_C PF12205.8 gi|154149702|ref|YP_001403320.1| - 0.61 10.2 9.3 0.3 11.2 3.6 2.5 2 0 0 2 2 2 0 G protein-coupled receptor kinase-interacting protein 1 C term Zn-ribbon_8 PF09723.10 gi|154149702|ref|YP_001403320.1| - 1.6 8.9 5.2 0.91 9.7 0.2 2.8 2 1 1 3 3 3 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|154149702|ref|YP_001403320.1| - 1.8 8.2 4.2 8.5 6.1 0.5 2.7 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF724 PF05266.14 gi|154149702|ref|YP_001403320.1| - 2.6 7.8 15.5 6.9 6.4 7.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF724) AAA_23 PF13476.6 gi|154149702|ref|YP_001403320.1| - 7.2 7.1 27.2 0.036 14.5 11.4 2.2 1 1 0 2 2 2 0 AAA domain DUF1664 PF07889.12 gi|154149702|ref|YP_001403320.1| - 8.1 6.5 9.6 5.9 6.9 1.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) OB_aCoA_assoc PF01796.17 gi|154149703|ref|YP_001403321.1| - 2.2e-19 69.2 0.0 2.9e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|154149703|ref|YP_001403321.1| - 4e-10 39.4 4.6 6e-10 38.8 4.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2HC_2 PF13913.6 gi|154149703|ref|YP_001403321.1| - 0.051 13.5 2.7 0.051 13.5 2.7 2.2 1 1 1 2 2 2 0 zinc-finger of a C2HC-type DUF953 PF06110.11 gi|154149703|ref|YP_001403321.1| - 0.055 13.1 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) zinc_ribbon_5 PF13719.6 gi|154149703|ref|YP_001403321.1| - 0.056 13.2 2.4 1.5 8.7 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|154149703|ref|YP_001403321.1| - 0.064 14.0 1.2 0.1 13.3 0.7 1.6 2 0 0 2 2 2 0 zinc-ribbon family HypA PF01155.19 gi|154149703|ref|YP_001403321.1| - 0.14 12.2 0.1 0.24 11.4 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_6 PF14599.6 gi|154149703|ref|YP_001403321.1| - 0.18 11.9 1.1 3.6 7.7 0.2 2.4 2 0 0 2 2 2 0 Zinc-ribbon Auto_anti-p27 PF06677.12 gi|154149703|ref|YP_001403321.1| - 0.19 11.9 1.4 0.35 11.1 1.4 1.5 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Thiolase_N PF00108.23 gi|154149704|ref|YP_001403322.1| - 5.3e-29 101.4 0.2 8.5e-29 100.7 0.2 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|154149704|ref|YP_001403322.1| - 1.7e-11 43.9 1.6 1.7e-11 43.9 1.6 2.6 2 2 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|154149704|ref|YP_001403322.1| - 0.00016 21.3 7.7 0.0004 20.0 4.3 2.9 1 1 1 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.10 gi|154149705|ref|YP_001403323.1| - 1.2e-10 41.4 0.0 2.5e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.17 gi|154149705|ref|YP_001403323.1| - 9.4e-07 28.9 0.2 1.2e-06 28.5 0.2 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.23 gi|154149705|ref|YP_001403323.1| - 0.00065 19.1 0.1 0.001 18.5 0.1 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.10 gi|154149705|ref|YP_001403323.1| - 0.013 15.1 0.1 0.36 10.4 0.0 2.0 1 1 1 2 2 2 0 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.10 gi|154149705|ref|YP_001403323.1| - 0.02 14.7 0.5 0.02 14.7 0.5 1.9 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_3 PF01381.22 gi|154149706|ref|YP_001403324.1| - 7.1e-06 26.0 0.0 2.1e-05 24.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|154149706|ref|YP_001403324.1| - 0.00026 21.3 0.0 0.00056 20.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|154149706|ref|YP_001403324.1| - 0.011 15.7 0.0 0.029 14.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain CTP-dep_RFKase PF01982.16 gi|154149707|ref|YP_001403325.1| - 6.2e-45 152.2 0.0 8.7e-45 151.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_Crp_2 PF13545.6 gi|154149707|ref|YP_001403325.1| - 9.4e-05 22.3 0.1 0.00018 21.4 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|154149707|ref|YP_001403325.1| - 0.00044 20.1 0.0 0.00071 19.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|154149707|ref|YP_001403325.1| - 0.0013 18.6 0.0 0.0029 17.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|154149707|ref|YP_001403325.1| - 0.011 15.8 0.0 0.054 13.6 0.1 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|154149707|ref|YP_001403325.1| - 0.015 15.2 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.6 gi|154149707|ref|YP_001403325.1| - 0.033 14.0 0.0 0.059 13.2 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|154149707|ref|YP_001403325.1| - 0.056 13.4 0.3 0.13 12.2 0.2 1.7 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 gi|154149707|ref|YP_001403325.1| - 0.082 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DHBP_synthase PF00926.19 gi|154149708|ref|YP_001403326.1| - 6.8e-58 195.4 0.0 7.7e-58 195.2 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase PAS_9 PF13426.7 gi|154149709|ref|YP_001403327.1| - 1.8e-45 153.5 0.0 9.2e-11 41.9 0.1 5.9 6 0 0 6 6 6 5 PAS domain PAS_4 PF08448.10 gi|154149709|ref|YP_001403327.1| - 2.4e-43 146.8 3.5 3.6e-10 40.1 0.0 7.1 6 2 1 7 7 7 5 PAS fold PAS PF00989.25 gi|154149709|ref|YP_001403327.1| - 6.6e-40 135.6 0.1 1.5e-12 47.5 0.0 6.3 5 2 0 5 5 5 4 PAS fold PAS_3 PF08447.12 gi|154149709|ref|YP_001403327.1| - 4.1e-27 94.3 0.0 4.7e-10 39.6 0.0 5.4 5 1 0 5 5 4 3 PAS fold PAS_8 PF13188.7 gi|154149709|ref|YP_001403327.1| - 2.9e-26 91.0 0.1 6.8e-05 22.8 0.0 5.4 5 0 0 5 5 5 4 PAS domain Response_reg PF00072.24 gi|154149709|ref|YP_001403327.1| - 1.8e-18 66.7 0.0 7.3e-18 64.8 0.0 2.1 1 0 0 1 1 1 1 Response regulator receiver domain PAS_7 PF12860.7 gi|154149709|ref|YP_001403327.1| - 2e-12 47.3 4.6 2.1e-08 34.3 0.0 4.8 5 1 0 5 5 4 2 PAS fold HATPase_c PF02518.26 gi|154149709|ref|YP_001403327.1| - 4.7e-12 46.4 0.2 2.4e-11 44.1 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|154149709|ref|YP_001403327.1| - 3.6e-06 27.5 0.0 0.99 10.0 0.0 4.2 3 0 0 3 3 3 2 PAS domain SPOB_a PF14689.6 gi|154149709|ref|YP_001403327.1| - 0.0093 15.7 0.3 0.027 14.2 0.0 2.0 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.25 gi|154149709|ref|YP_001403327.1| - 0.014 15.4 0.6 0.45 10.6 0.0 3.3 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|154149709|ref|YP_001403327.1| - 0.046 13.6 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 GHKL domain DivIC PF04977.15 gi|154149709|ref|YP_001403327.1| - 0.16 11.7 3.3 0.84 9.4 3.3 2.3 1 0 0 1 1 1 0 Septum formation initiator HALZ PF02183.18 gi|154149709|ref|YP_001403327.1| - 0.3 11.3 1.8 0.89 9.8 1.8 1.9 1 0 0 1 1 1 0 Homeobox associated leucine zipper UPF0149 PF03695.13 gi|154149709|ref|YP_001403327.1| - 0.3 11.3 3.6 0.8 10.0 0.0 2.8 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0149) T3SS_needle_E PF08988.10 gi|154149709|ref|YP_001403327.1| - 0.33 11.1 6.4 0.9 9.7 5.0 2.6 2 0 0 2 2 2 0 Type III secretion system, cytoplasmic E component of needle DUF16 PF01519.16 gi|154149709|ref|YP_001403327.1| - 1.8 9.1 4.1 7.8 7.1 4.1 2.0 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF3552 PF12072.8 gi|154149709|ref|YP_001403327.1| - 2.5 7.5 10.0 0.069 12.6 3.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Peptidase_M24 PF00557.24 gi|154149710|ref|YP_001403328.1| - 6.8e-37 127.2 0.0 9.3e-37 126.7 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|154149710|ref|YP_001403328.1| - 4.5e-07 30.6 0.0 7.7e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain BPD_transp_1 PF00528.22 gi|154149711|ref|YP_001403329.1| - 3.7e-20 72.4 14.7 3.7e-20 72.4 14.7 2.5 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component Syndecan PF01034.20 gi|154149711|ref|YP_001403329.1| - 3.4 7.7 6.0 23 5.0 1.1 3.1 2 0 0 2 2 2 0 Syndecan domain ABC_tran PF00005.27 gi|154149712|ref|YP_001403330.1| - 6.8e-30 104.4 0.0 1.2e-29 103.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|154149712|ref|YP_001403330.1| - 1.3e-05 24.8 0.0 2.5e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|154149712|ref|YP_001403330.1| - 1.6e-05 24.9 0.0 0.0048 16.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|154149712|ref|YP_001403330.1| - 0.00045 20.2 0.0 0.00073 19.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|154149712|ref|YP_001403330.1| - 0.0018 17.8 0.9 0.24 10.8 0.1 2.5 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|154149712|ref|YP_001403330.1| - 0.0021 18.0 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|154149712|ref|YP_001403330.1| - 0.0037 17.7 0.1 0.051 14.0 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|154149712|ref|YP_001403330.1| - 0.0061 17.0 0.0 0.0092 16.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|154149712|ref|YP_001403330.1| - 0.021 14.4 0.0 0.04 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|154149712|ref|YP_001403330.1| - 0.061 13.6 0.1 0.22 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|154149712|ref|YP_001403330.1| - 0.094 13.2 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|154149713|ref|YP_001403331.1| - 6.7e-32 110.9 0.0 8.3e-32 110.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154149713|ref|YP_001403331.1| - 5.7e-11 42.8 0.9 0.00027 20.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|154149713|ref|YP_001403331.1| - 3.2e-05 23.6 0.3 6.4e-05 22.6 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|154149713|ref|YP_001403331.1| - 6.7e-05 22.4 0.0 0.04 13.4 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|154149713|ref|YP_001403331.1| - 0.00023 21.7 0.4 0.00032 21.3 0.4 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|154149713|ref|YP_001403331.1| - 0.00052 20.4 0.4 0.0007 20.0 0.4 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|154149713|ref|YP_001403331.1| - 0.0017 18.6 0.1 0.022 15.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|154149713|ref|YP_001403331.1| - 0.0042 16.9 0.1 0.16 11.7 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|154149713|ref|YP_001403331.1| - 0.0055 16.6 0.1 0.0093 15.9 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|154149713|ref|YP_001403331.1| - 0.0057 16.4 0.6 0.049 13.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|154149713|ref|YP_001403331.1| - 0.017 14.2 0.5 0.027 13.5 0.5 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|154149713|ref|YP_001403331.1| - 0.03 13.6 0.0 0.053 12.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Rad17 PF03215.15 gi|154149713|ref|YP_001403331.1| - 0.031 14.2 0.0 0.043 13.7 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain cobW PF02492.19 gi|154149713|ref|YP_001403331.1| - 0.033 13.8 0.1 0.054 13.1 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|154149713|ref|YP_001403331.1| - 0.05 14.1 0.0 0.11 13.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain NACHT PF05729.12 gi|154149713|ref|YP_001403331.1| - 0.053 13.4 0.4 0.11 12.4 0.4 1.5 1 0 0 1 1 1 0 NACHT domain ATPase PF06745.13 gi|154149713|ref|YP_001403331.1| - 0.059 12.7 0.2 0.48 9.7 0.1 2.0 2 0 0 2 2 2 0 KaiC FtsK_SpoIIIE PF01580.18 gi|154149713|ref|YP_001403331.1| - 0.067 12.5 0.1 0.12 11.7 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 gi|154149713|ref|YP_001403331.1| - 0.069 13.2 0.8 0.12 12.5 0.8 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|154149713|ref|YP_001403331.1| - 0.069 13.1 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|154149713|ref|YP_001403331.1| - 0.07 13.0 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 NTPase AAA_28 PF13521.6 gi|154149713|ref|YP_001403331.1| - 0.088 13.1 0.2 0.2 11.9 0.0 1.7 2 1 1 3 3 2 0 AAA domain AAA_25 PF13481.6 gi|154149713|ref|YP_001403331.1| - 0.1 12.2 0.7 0.21 11.2 0.2 1.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|154149713|ref|YP_001403331.1| - 0.11 12.4 0.2 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|154149713|ref|YP_001403331.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|154149713|ref|YP_001403331.1| - 0.13 12.4 0.5 1.2 9.3 0.5 2.1 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|154149713|ref|YP_001403331.1| - 0.16 11.4 0.0 0.3 10.5 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit FtsX PF02687.21 gi|154149714|ref|YP_001403332.1| - 8.8e-11 42.1 14.2 1e-10 42.0 5.7 3.0 3 0 0 3 3 3 2 FtsX-like permease family BPD_transp_1 PF00528.22 gi|154149714|ref|YP_001403332.1| - 0.17 11.6 14.8 0.042 13.6 11.6 1.6 2 0 0 2 2 2 0 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.6 gi|154149715|ref|YP_001403333.1| - 8.3e-30 104.3 0.0 1.2e-29 103.8 0.0 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|154149715|ref|YP_001403333.1| - 2.7e-21 76.5 0.4 6.4e-21 75.3 0.4 1.6 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|154149715|ref|YP_001403333.1| - 1.4e-08 34.4 0.0 2e-06 27.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|154149715|ref|YP_001403333.1| - 1.5e-08 34.6 0.0 2.8e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein OpuAC PF04069.12 gi|154149715|ref|YP_001403333.1| - 8.8e-08 32.0 0.0 1.6e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Pilin_N PF07790.11 gi|154149715|ref|YP_001403333.1| - 0.015 16.2 0.2 0.043 14.7 0.2 1.8 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Lipoprotein_9 PF03180.14 gi|154149715|ref|YP_001403333.1| - 0.024 13.8 1.4 0.055 12.6 0.1 2.3 2 1 0 2 2 2 0 NLPA lipoprotein Aminotran_1_2 PF00155.21 gi|154149716|ref|YP_001403334.1| - 1.2e-70 238.5 0.0 1.4e-70 238.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|154149716|ref|YP_001403334.1| - 3e-05 22.7 0.0 4.3e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|154149716|ref|YP_001403334.1| - 0.00033 20.1 0.0 0.00046 19.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.13 gi|154149716|ref|YP_001403334.1| - 0.004 16.1 0.0 0.0061 15.5 0.0 1.2 1 0 0 1 1 1 1 Allinase Aminotran_5 PF00266.19 gi|154149716|ref|YP_001403334.1| - 0.045 12.7 0.0 0.089 11.7 0.0 1.5 1 1 0 1 1 1 0 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|154149716|ref|YP_001403334.1| - 0.12 11.6 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase AMP-binding_C_2 PF14535.6 gi|154149717|ref|YP_001403335.1| - 4.2e-22 78.3 0.2 7.4e-22 77.5 0.2 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|154149717|ref|YP_001403335.1| - 9.6e-17 60.7 0.0 5.2e-16 58.2 0.0 1.9 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|154149717|ref|YP_001403335.1| - 0.0016 17.4 0.1 0.11 11.3 0.0 2.1 2 0 0 2 2 2 2 GH3 auxin-responsive promoter YARHG PF13308.6 gi|154149717|ref|YP_001403335.1| - 0.14 12.1 0.1 0.34 10.8 0.1 1.6 1 0 0 1 1 1 0 YARHG domain Borrelia_P13 PF05628.12 gi|154149717|ref|YP_001403335.1| - 0.2 11.6 0.0 0.33 10.9 0.0 1.3 1 0 0 1 1 1 0 Borrelia membrane protein P13 TPP_enzyme_C PF02775.21 gi|154149718|ref|YP_001403336.1| - 1.6e-23 83.2 0.1 2.4e-23 82.6 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CODH_A_N PF18537.1 gi|154149718|ref|YP_001403336.1| - 0.08 13.0 0.3 0.65 10.1 0.0 2.3 2 0 0 2 2 2 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain DXP_synthase_N PF13292.6 gi|154149718|ref|YP_001403336.1| - 0.25 10.5 0.0 0.58 9.3 0.0 1.6 1 1 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.19 gi|154149719|ref|YP_001403337.1| - 2e-68 230.6 1.8 2.6e-68 230.2 1.8 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|154149719|ref|YP_001403337.1| - 1.9e-25 89.1 0.0 3.7e-25 88.2 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|154149719|ref|YP_001403337.1| - 8.3e-07 28.9 0.0 1.7e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain RuBisCO_small PF00101.20 gi|154149719|ref|YP_001403337.1| - 0.16 12.0 0.0 0.46 10.5 0.0 1.7 1 0 0 1 1 1 0 Ribulose bisphosphate carboxylase, small chain POR PF01558.18 gi|154149720|ref|YP_001403338.1| - 1e-32 113.6 0.4 1.2e-32 113.4 0.4 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase GAPES3 PF17154.4 gi|154149720|ref|YP_001403338.1| - 0.058 13.4 0.0 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Gammaproteobacterial periplasmic sensor domain Fer4 PF00037.27 gi|154149721|ref|YP_001403339.1| - 2.1e-12 46.3 17.0 2.3e-06 27.2 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|154149721|ref|YP_001403339.1| - 3.1e-10 39.5 11.5 1.9e-05 24.5 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154149721|ref|YP_001403339.1| - 4.8e-10 39.1 14.5 6.8e-06 25.9 4.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154149721|ref|YP_001403339.1| - 1.1e-07 32.3 7.9 0.0028 18.2 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154149721|ref|YP_001403339.1| - 1.2e-07 32.5 10.0 0.0014 19.5 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|154149721|ref|YP_001403339.1| - 4.8e-07 29.8 19.8 1.3e-05 25.3 11.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|154149721|ref|YP_001403339.1| - 6.6e-06 26.8 7.4 0.0073 17.0 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|154149721|ref|YP_001403339.1| - 7e-06 26.1 22.6 0.00047 20.2 12.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154149721|ref|YP_001403339.1| - 1.7e-05 25.2 6.2 0.033 14.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154149721|ref|YP_001403339.1| - 4e-05 23.6 11.6 0.0031 17.6 11.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154149721|ref|YP_001403339.1| - 0.00029 21.1 12.4 0.01 16.3 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|154149721|ref|YP_001403339.1| - 0.0006 20.6 7.0 0.22 12.4 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154149721|ref|YP_001403339.1| - 0.0015 19.0 10.9 0.04 14.5 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|154149721|ref|YP_001403339.1| - 0.018 15.4 13.8 0.44 11.0 3.1 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|154149721|ref|YP_001403339.1| - 0.14 13.2 17.0 1.5 9.9 5.3 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain AP_endonuc_2 PF01261.24 gi|154149722|ref|YP_001403340.1| - 6.3e-12 45.4 0.1 9e-12 44.9 0.1 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel zf-ribbon_3 PF13248.6 gi|154149723|ref|YP_001403341.1| - 5.8e-06 25.5 3.9 1.3e-05 24.4 3.9 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DUF2116 PF09889.9 gi|154149723|ref|YP_001403341.1| - 7.3e-06 25.9 0.4 1.3e-05 25.1 0.4 1.4 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) zinc_ribbon_2 PF13240.6 gi|154149723|ref|YP_001403341.1| - 6.7e-05 22.5 2.9 0.00015 21.4 2.9 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|154149723|ref|YP_001403341.1| - 0.00013 21.9 1.6 0.00028 20.9 1.6 1.6 1 0 0 1 1 1 1 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|154149723|ref|YP_001403341.1| - 0.048 13.8 2.6 0.1 12.8 2.6 1.5 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_ribbon_17 PF17120.5 gi|154149723|ref|YP_001403341.1| - 0.093 12.4 0.2 0.17 11.5 0.2 1.4 1 0 0 1 1 1 0 Zinc-ribbon, C4HC2 type zinc_ribbon_15 PF17032.5 gi|154149723|ref|YP_001403341.1| - 0.25 12.1 2.3 0.48 11.2 2.3 1.5 1 0 0 1 1 1 0 zinc-ribbon family DUF983 PF06170.12 gi|154149723|ref|YP_001403341.1| - 0.53 10.7 4.3 0.58 10.6 0.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-C3HC4_3 PF13920.6 gi|154149723|ref|YP_001403341.1| - 1.8 8.5 4.8 9.2 6.2 0.2 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Ogr_Delta PF04606.12 gi|154149723|ref|YP_001403341.1| - 3.3 7.7 5.3 9.9 6.2 0.4 2.5 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-LITAF-like PF10601.9 gi|154149723|ref|YP_001403341.1| - 8.3 6.8 6.6 7.7 6.9 2.2 2.7 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Methyltransf_25 PF13649.6 gi|154149724|ref|YP_001403342.1| - 1.1e-17 64.5 0.1 2.1e-17 63.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154149724|ref|YP_001403342.1| - 2.2e-17 63.5 0.1 3.8e-17 62.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154149724|ref|YP_001403342.1| - 9.4e-15 54.7 0.0 1.3e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154149724|ref|YP_001403342.1| - 1.6e-09 38.3 0.0 3e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|154149724|ref|YP_001403342.1| - 2.2e-08 33.7 0.0 5.2e-08 32.5 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|154149724|ref|YP_001403342.1| - 2e-06 27.7 0.0 5.3e-06 26.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|154149724|ref|YP_001403342.1| - 0.0013 18.2 0.0 0.015 14.7 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase MetW PF07021.12 gi|154149724|ref|YP_001403342.1| - 0.0026 17.4 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|154149724|ref|YP_001403342.1| - 0.0066 16.0 0.0 0.036 13.6 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase small domain PCMT PF01135.19 gi|154149724|ref|YP_001403342.1| - 0.014 15.1 0.0 0.037 13.8 0.0 1.6 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_5 PF01795.19 gi|154149724|ref|YP_001403342.1| - 0.2 11.1 0.0 1 8.8 0.0 1.8 1 1 1 2 2 2 0 MraW methylase family tRNA_anti-codon PF01336.25 gi|154149726|ref|YP_001403344.1| - 0.081 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|154149727|ref|YP_001403345.1| - 2.4e-08 33.8 0.0 0.00084 19.3 0.0 2.9 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain DUF1858 PF08984.11 gi|154149728|ref|YP_001403346.1| - 3.6e-19 68.7 0.0 4e-19 68.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1858) HTH_28 PF13518.6 gi|154149728|ref|YP_001403346.1| - 0.0084 16.2 0.1 0.057 13.5 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Ub-Mut7C PF14451.6 gi|154149728|ref|YP_001403346.1| - 0.15 11.9 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Mut7-C ubiquitin CbiZ PF01955.18 gi|154149729|ref|YP_001403347.1| - 3.1e-32 112.2 0.1 4.4e-32 111.8 0.1 1.2 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase zf-like PF04071.12 gi|154149729|ref|YP_001403347.1| - 1.4e-29 101.9 6.5 2.2e-29 101.2 6.5 1.3 1 0 0 1 1 1 1 Cysteine-rich small domain NRDD PF13597.6 gi|154149730|ref|YP_001403348.1| - 1.2e-13 50.7 3.4 1.2e-13 50.7 3.4 2.3 1 1 1 2 2 2 1 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.7 gi|154149730|ref|YP_001403348.1| - 0.0039 17.2 16.3 0.12 12.4 6.1 2.7 1 1 2 3 3 3 3 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|154149730|ref|YP_001403348.1| - 0.017 15.8 13.0 0.63 10.8 1.6 3.1 3 0 0 3 3 3 0 zinc-ribbon family HypA PF01155.19 gi|154149730|ref|YP_001403348.1| - 0.025 14.6 2.0 0.025 14.6 2.0 2.5 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TerY_C PF15616.6 gi|154149730|ref|YP_001403348.1| - 0.04 14.0 11.5 0.093 12.8 11.6 1.6 1 1 0 1 1 1 0 TerY-C metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|154149730|ref|YP_001403348.1| - 0.11 12.5 0.6 0.11 12.5 0.6 4.4 2 1 2 4 4 3 0 Transposase zinc-ribbon domain RecR PF02132.15 gi|154149730|ref|YP_001403348.1| - 0.16 11.6 10.5 0.24 11.0 2.8 3.1 2 1 0 2 2 2 0 RecR protein Prok-RING_2 PF14445.6 gi|154149730|ref|YP_001403348.1| - 0.28 11.4 10.3 0.072 13.3 3.2 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 PolC_DP2 PF03833.13 gi|154149730|ref|YP_001403348.1| - 0.3 8.9 6.0 0.33 8.7 6.0 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF1610 PF07754.11 gi|154149730|ref|YP_001403348.1| - 0.32 11.0 18.8 0.42 10.6 4.1 3.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) FYVE PF01363.21 gi|154149730|ref|YP_001403348.1| - 0.4 10.9 13.7 76 3.6 13.7 2.4 1 1 0 1 1 1 0 FYVE zinc finger Zn-ribbon_8 PF09723.10 gi|154149730|ref|YP_001403348.1| - 0.45 10.7 20.5 9.4 6.4 5.7 3.9 2 2 0 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|154149730|ref|YP_001403348.1| - 0.68 9.9 17.2 2.8 8.0 8.4 2.8 1 1 1 2 2 2 0 zinc-ribbons NOB1_Zn_bind PF08772.11 gi|154149730|ref|YP_001403348.1| - 0.94 9.7 14.5 35 4.6 3.6 3.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.6 gi|154149730|ref|YP_001403348.1| - 1.8 8.1 21.5 1.4 8.4 2.4 3.7 2 2 1 3 3 3 0 zinc-ribbon domain zf-B_box PF00643.24 gi|154149730|ref|YP_001403348.1| - 4 7.7 21.8 3.8 7.8 7.6 3.2 1 1 2 3 3 3 0 B-box zinc finger Nudix_N_2 PF14803.6 gi|154149730|ref|YP_001403348.1| - 6.4 6.8 16.7 8.4 6.4 0.4 4.4 3 2 1 4 4 4 0 Nudix N-terminal A2L_zn_ribbon PF08792.10 gi|154149730|ref|YP_001403348.1| - 7.1 6.5 22.4 0.55 10.0 4.3 4.2 4 0 0 4 4 4 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|154149730|ref|YP_001403348.1| - 8.5 6.0 18.4 0.59 9.7 0.4 3.7 2 2 1 4 4 4 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|154149730|ref|YP_001403348.1| - 9.5 6.1 23.5 0.59 9.9 0.3 4.0 3 1 1 4 4 3 0 zinc-ribbon domain OMPdecase PF00215.24 gi|154149731|ref|YP_001403349.1| - 2.1e-35 122.3 0.1 2.7e-35 122.0 0.1 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DS PF01916.17 gi|154149732|ref|YP_001403350.1| - 3.2e-98 328.5 0.0 3.7e-98 328.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Molydop_binding PF01568.21 gi|154149733|ref|YP_001403351.1| - 2.4e-05 24.3 0.9 0.042 13.9 0.1 2.3 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|154149733|ref|YP_001403351.1| - 5.3e-05 23.3 0.1 0.00011 22.3 0.1 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Apolipoprotein PF01442.18 gi|154149733|ref|YP_001403351.1| - 0.0038 17.1 3.5 0.0057 16.5 3.5 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Lyase_1 PF00206.20 gi|154149733|ref|YP_001403351.1| - 0.0076 15.7 4.1 0.0095 15.4 4.1 1.1 1 0 0 1 1 1 1 Lyase Dynamin_M PF01031.20 gi|154149733|ref|YP_001403351.1| - 0.031 13.5 0.7 0.038 13.2 0.7 1.1 1 0 0 1 1 1 0 Dynamin central region PUMA PF15826.5 gi|154149733|ref|YP_001403351.1| - 0.068 13.4 0.3 0.091 12.9 0.3 1.1 1 0 0 1 1 1 0 Bcl-2-binding component 3, p53 upregulated modulator of apoptosis BshC PF10079.9 gi|154149733|ref|YP_001403351.1| - 0.36 9.5 3.9 0.45 9.2 3.9 1.1 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC EspB PF05802.11 gi|154149733|ref|YP_001403351.1| - 0.41 10.6 15.5 0.49 10.4 15.1 1.2 1 1 0 1 1 1 0 Enterobacterial EspB protein ApoLp-III PF07464.11 gi|154149733|ref|YP_001403351.1| - 0.67 10.0 13.5 5.3 7.1 2.8 2.1 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Ribosomal_L28e PF01778.17 gi|154149733|ref|YP_001403351.1| - 1.5 9.6 7.1 3.1 8.6 7.1 1.6 1 0 0 1 1 1 0 Ribosomal L28e protein family Pex19 PF04614.12 gi|154149733|ref|YP_001403351.1| - 3.1 7.5 8.8 4.1 7.1 8.8 1.1 1 0 0 1 1 1 0 Pex19 protein family DivIVA PF05103.13 gi|154149733|ref|YP_001403351.1| - 4.2 7.5 12.6 3.8 7.6 11.0 1.7 1 1 1 2 2 2 0 DivIVA protein SRTM1 PF15872.5 gi|154149734|ref|YP_001403352.1| - 0.013 15.6 1.0 0.019 15.1 0.1 1.6 2 0 0 2 2 2 0 Serine-rich and transmembrane domain-containing protein 1 Dexa_ind PF15198.6 gi|154149734|ref|YP_001403352.1| - 0.065 13.3 0.1 0.091 12.9 0.1 1.3 1 0 0 1 1 1 0 Dexamethasone-induced Phasin PF05597.11 gi|154149735|ref|YP_001403353.1| - 0.0097 15.9 0.0 0.03 14.3 0.0 1.7 2 0 0 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) BLOC1_2 PF10046.9 gi|154149735|ref|YP_001403353.1| - 0.091 13.1 0.0 0.15 12.4 0.0 1.3 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1192 PF06698.11 gi|154149736|ref|YP_001403354.1| - 0.0068 16.4 0.7 0.059 13.4 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1192) Cep57_CLD PF14073.6 gi|154149736|ref|YP_001403354.1| - 0.029 14.4 0.2 0.029 14.4 0.2 1.1 1 0 0 1 1 1 0 Centrosome localisation domain of Cep57 HalX PF08663.10 gi|154149736|ref|YP_001403354.1| - 0.08 13.3 1.5 9.6 6.6 0.1 2.1 1 1 1 2 2 2 0 HalX domain BMFP PF04380.13 gi|154149736|ref|YP_001403354.1| - 0.95 10.0 3.9 35 5.0 3.9 2.3 1 1 0 1 1 1 0 Membrane fusogenic activity DUF3007 PF11460.8 gi|154149737|ref|YP_001403355.1| - 0.055 13.7 0.7 0.22 11.8 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) PspB PF06667.12 gi|154149737|ref|YP_001403355.1| - 0.098 12.7 1.5 1.7 8.8 0.0 2.2 2 0 0 2 2 2 0 Phage shock protein B TssO PF17561.2 gi|154149737|ref|YP_001403355.1| - 0.16 12.1 0.6 3.7 7.6 0.3 2.1 2 0 0 2 2 2 0 Type VI secretion system, TssO DUF4094 PF13334.6 gi|154149737|ref|YP_001403355.1| - 0.95 9.9 2.9 4.8 7.7 2.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4094) Sugarporin_N PF11471.8 gi|154149737|ref|YP_001403355.1| - 4.4 7.3 8.8 0.18 11.8 1.4 2.3 2 1 1 3 3 3 0 Maltoporin periplasmic N-terminal extension Prok-RING_2 PF14445.6 gi|154149738|ref|YP_001403356.1| - 7.1e-39 131.8 8.7 8e-39 131.6 8.7 1.0 1 0 0 1 1 1 1 Prokaryotic RING finger family 2 Siva PF05458.12 gi|154149738|ref|YP_001403356.1| - 0.024 14.3 2.7 0.027 14.2 2.7 1.0 1 0 0 1 1 1 0 Cd27 binding protein (Siva) FYVE PF01363.21 gi|154149738|ref|YP_001403356.1| - 0.16 12.2 10.3 0.93 9.7 10.3 1.9 1 1 0 1 1 1 0 FYVE zinc finger zf-B_box PF00643.24 gi|154149738|ref|YP_001403356.1| - 0.6 10.3 8.8 1.1 9.4 3.2 2.5 2 1 0 2 2 2 0 B-box zinc finger zf-HIT PF04438.16 gi|154149738|ref|YP_001403356.1| - 0.63 10.0 11.6 40 4.2 0.0 3.0 2 1 0 2 2 2 0 HIT zinc finger C1_2 PF03107.16 gi|154149738|ref|YP_001403356.1| - 0.75 10.2 13.4 1.1e+02 3.2 13.4 2.6 1 1 0 1 1 1 0 C1 domain CEBP_ZZ PF16366.5 gi|154149738|ref|YP_001403356.1| - 2.1 8.7 12.8 10 6.5 12.8 1.9 1 1 0 1 1 1 0 Cytoplasmic polyadenylation element-binding protein ZZ domain SNARE_assoc PF09335.11 gi|154149739|ref|YP_001403357.1| - 5.4e-21 75.3 6.5 5.4e-21 75.3 6.5 2.2 3 0 0 3 3 3 1 SNARE associated Golgi protein DUF2949 PF11165.8 gi|154149739|ref|YP_001403357.1| - 0.017 15.5 1.9 10 6.6 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2949) N6_Mtase PF02384.16 gi|154149741|ref|YP_001403359.1| - 0.0032 16.8 0.0 0.005 16.2 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|154149741|ref|YP_001403359.1| - 0.0046 16.8 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154149741|ref|YP_001403359.1| - 0.17 11.7 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF1743 PF08489.11 gi|154149742|ref|YP_001403360.1| - 1.3e-38 131.6 0.0 3.6e-38 130.2 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|154149742|ref|YP_001403360.1| - 0.00048 20.1 0.0 0.00088 19.2 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|154149742|ref|YP_001403360.1| - 0.004 17.3 0.0 0.0082 16.3 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RNA_POL_M_15KD PF02150.16 gi|154149742|ref|YP_001403360.1| - 0.037 13.9 1.1 0.089 12.7 1.1 1.7 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit C1_1 PF00130.22 gi|154149742|ref|YP_001403360.1| - 0.046 13.6 1.5 0.089 12.7 1.5 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_2 PF03107.16 gi|154149742|ref|YP_001403360.1| - 0.091 13.1 1.6 0.2 12.0 1.6 1.5 1 0 0 1 1 1 0 C1 domain DZR PF12773.7 gi|154149742|ref|YP_001403360.1| - 0.14 12.2 1.2 0.34 11.0 1.2 1.6 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|154149742|ref|YP_001403360.1| - 0.23 11.5 1.1 0.56 10.3 1.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HIT PF04438.16 gi|154149742|ref|YP_001403360.1| - 0.56 10.1 6.0 2.7 7.9 6.0 2.2 1 1 0 1 1 1 0 HIT zinc finger HTH_3 PF01381.22 gi|154149743|ref|YP_001403361.1| - 2.3e-12 46.8 0.1 5.7e-12 45.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|154149743|ref|YP_001403361.1| - 3.2e-09 37.0 0.7 5.7e-08 33.0 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|154149743|ref|YP_001403361.1| - 4.2e-06 26.7 0.1 9.7e-06 25.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|154149743|ref|YP_001403361.1| - 0.00085 19.2 0.1 0.0022 17.9 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.6 gi|154149743|ref|YP_001403361.1| - 0.0075 16.1 0.3 0.029 14.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|154149743|ref|YP_001403361.1| - 0.0087 15.6 1.2 0.092 12.3 0.3 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_26 PF13443.6 gi|154149743|ref|YP_001403361.1| - 0.04 14.4 0.0 0.21 12.0 0.0 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain PDDEXK_5 PF11645.8 gi|154149743|ref|YP_001403361.1| - 0.094 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK endonuclease HTH_23 PF13384.6 gi|154149743|ref|YP_001403361.1| - 0.14 12.0 0.0 0.48 10.3 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain DUF2070 PF09843.9 gi|154149744|ref|YP_001403362.1| - 4.6e-179 596.3 3.6 5.2e-179 596.2 3.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) UPF0114 PF03350.16 gi|154149745|ref|YP_001403363.1| - 5.1e-20 71.8 9.2 5.1e-20 71.8 9.2 1.8 2 0 0 2 2 2 1 Uncharacterized protein family, UPF0114 DUF962 PF06127.11 gi|154149745|ref|YP_001403363.1| - 0.098 12.8 0.1 0.65 10.1 0.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF962) PPR PF01535.20 gi|154149746|ref|YP_001403364.1| - 0.093 13.0 0.7 14 6.2 0.0 3.1 3 0 0 3 3 3 0 PPR repeat Cpn60_TCP1 PF00118.24 gi|154149747|ref|YP_001403365.1| - 1.7e-186 620.7 23.9 1.9e-186 620.5 23.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family CHB_HEX_C PF03174.13 gi|154149748|ref|YP_001403366.1| - 0.055 13.5 0.0 1.9 8.5 0.0 2.7 1 1 1 2 2 2 0 Chitobiase/beta-hexosaminidase C-terminal domain LPAM_1 PF08139.12 gi|154149748|ref|YP_001403366.1| - 0.13 12.8 1.7 0.42 11.2 1.7 1.9 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site SAP130_C PF16014.5 gi|154149748|ref|YP_001403366.1| - 0.79 8.7 17.6 1.1 8.3 17.6 1.2 1 0 0 1 1 1 0 Histone deacetylase complex subunit SAP130 C-terminus zinc_ribbon_13 PF09855.9 gi|154149749|ref|YP_001403367.1| - 0.11 12.7 0.4 0.11 12.7 0.4 3.3 2 2 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Fer4 PF00037.27 gi|154149750|ref|YP_001403368.1| - 3.4e-16 58.3 13.9 6.1e-09 35.3 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154149750|ref|YP_001403368.1| - 1.8e-10 40.4 12.9 5.8e-07 29.3 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|154149750|ref|YP_001403368.1| - 2.6e-10 39.8 9.6 1e-05 25.3 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154149750|ref|YP_001403368.1| - 3.1e-09 36.8 22.2 6.9e-06 26.1 12.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154149750|ref|YP_001403368.1| - 4.3e-09 37.2 9.9 0.00038 21.3 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|154149750|ref|YP_001403368.1| - 6.8e-09 36.2 8.2 0.00039 21.0 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154149750|ref|YP_001403368.1| - 4.2e-07 30.0 21.6 1.2e-05 25.3 12.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154149750|ref|YP_001403368.1| - 7.3e-07 29.6 7.4 0.0011 19.5 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154149750|ref|YP_001403368.1| - 7.3e-06 26.0 22.2 0.00012 22.1 12.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|154149750|ref|YP_001403368.1| - 5e-05 24.0 7.4 0.066 14.0 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|154149750|ref|YP_001403368.1| - 0.00022 21.5 11.8 0.0037 17.6 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|154149750|ref|YP_001403368.1| - 0.00023 21.6 9.6 0.015 15.8 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|154149750|ref|YP_001403368.1| - 0.0033 17.8 13.9 0.21 12.1 3.7 2.2 1 1 3 4 4 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|154149750|ref|YP_001403368.1| - 0.0035 18.2 11.7 0.091 13.6 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|154149750|ref|YP_001403368.1| - 0.01 16.7 17.2 0.52 11.4 4.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.18 gi|154149751|ref|YP_001403369.1| - 7e-37 127.2 0.2 9.8e-37 126.7 0.2 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.19 gi|154149752|ref|YP_001403370.1| - 6.4e-66 222.4 0.3 8.4e-66 222.0 0.3 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|154149752|ref|YP_001403370.1| - 6.9e-26 90.5 0.0 1.3e-25 89.7 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|154149752|ref|YP_001403370.1| - 1.3e-06 28.3 0.0 4.9e-06 26.4 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|154149753|ref|YP_001403371.1| - 6.1e-25 87.8 0.7 1.1e-24 86.9 0.7 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TrkA_C PF02080.21 gi|154149754|ref|YP_001403372.1| - 1.4e-14 53.7 0.1 3.4e-14 52.4 0.1 1.7 2 0 0 2 2 2 1 TrkA-C domain Tudor_1_RapA PF18339.1 gi|154149754|ref|YP_001403372.1| - 0.014 15.3 0.0 2.5 8.1 0.0 2.3 2 0 0 2 2 2 0 RapA N-terminal Tudor like domain 1 Castor_Poll_mid PF06241.12 gi|154149754|ref|YP_001403372.1| - 0.069 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Castor and Pollux, part of voltage-gated ion channel Na_H_Exchanger PF00999.21 gi|154149755|ref|YP_001403373.1| - 2.1e-40 138.7 49.6 2.7e-40 138.3 49.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DCD PF06559.11 gi|154149755|ref|YP_001403373.1| - 0.19 10.5 0.1 0.29 9.9 0.1 1.1 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) CTP_transf_like PF01467.26 gi|154149756|ref|YP_001403374.1| - 2.8e-15 56.8 0.0 3.1e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|154149756|ref|YP_001403374.1| - 0.092 12.6 0.0 0.2 11.5 0.0 2.0 1 1 0 1 1 1 0 FAD synthetase Prok-JAB PF14464.6 gi|154149757|ref|YP_001403375.1| - 8.2e-08 32.0 0.0 1.3e-07 31.4 0.0 1.3 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|154149757|ref|YP_001403375.1| - 0.012 15.5 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 RadC-like JAB domain AAL_decarboxy PF03306.13 gi|154149759|ref|YP_001403377.1| - 1.6e-80 269.6 0.1 1.8e-80 269.4 0.1 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase Rotamase_3 PF13616.6 gi|154149760|ref|YP_001403378.1| - 2.5e-27 95.7 0.2 3.7e-27 95.2 0.2 1.3 1 1 0 1 1 1 1 PPIC-type PPIASE domain Rotamase PF00639.21 gi|154149760|ref|YP_001403378.1| - 4.1e-26 91.8 0.0 4.8e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 gi|154149760|ref|YP_001403378.1| - 4.1e-13 50.2 0.1 4.6e-13 50.1 0.1 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain DUF438 PF04282.13 gi|154149760|ref|YP_001403378.1| - 0.18 11.8 0.0 0.84 9.6 0.0 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF438) DUF4346 PF14251.6 gi|154149762|ref|YP_001403380.1| - 5.6e-07 29.6 0.1 2.1e-06 27.8 0.1 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|154149762|ref|YP_001403380.1| - 0.00012 21.9 0.2 0.0017 18.1 0.0 2.4 1 1 1 2 2 2 1 Pterin binding enzyme CdhD PF03599.16 gi|154149762|ref|YP_001403380.1| - 0.059 12.1 0.0 0.13 10.9 0.0 1.6 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit PHP_C PF13263.6 gi|154149763|ref|YP_001403381.1| - 1.8e-16 59.7 0.2 4.9e-16 58.2 0.1 1.8 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|154149763|ref|YP_001403381.1| - 9.7e-11 42.3 0.0 1.7e-10 41.5 0.0 1.3 1 1 0 1 1 1 1 PHP domain PseudoU_synth_1 PF01416.20 gi|154149764|ref|YP_001403382.1| - 1.2e-28 99.7 0.0 2.9e-20 72.7 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase LMWPc PF01451.21 gi|154149765|ref|YP_001403383.1| - 3.8e-21 75.9 0.0 4.6e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase GATase_3 PF07685.14 gi|154149767|ref|YP_001403385.1| - 7e-38 130.2 0.0 9.8e-38 129.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|154149767|ref|YP_001403385.1| - 1.3e-16 60.8 0.0 2.4e-16 60.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|154149767|ref|YP_001403385.1| - 2e-15 57.2 0.0 4.3e-10 39.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF1611 PF07755.11 gi|154149767|ref|YP_001403385.1| - 8.7e-05 21.9 0.2 0.00014 21.2 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain Peptidase_S51 PF03575.17 gi|154149767|ref|YP_001403385.1| - 0.0026 17.4 0.0 0.0039 16.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 PEP-utilizers PF00391.23 gi|154149767|ref|YP_001403385.1| - 0.025 14.3 0.6 3.4 7.5 0.9 2.9 1 1 1 2 2 2 0 PEP-utilising enzyme, mobile domain MobB PF03205.14 gi|154149767|ref|YP_001403385.1| - 0.036 14.0 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SNO PF01174.19 gi|154149767|ref|YP_001403385.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DUF333 PF03891.15 gi|154149768|ref|YP_001403386.1| - 5.1e-49 164.3 6.6 3.8e-24 84.6 0.7 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF333) Granulin PF00396.18 gi|154149768|ref|YP_001403386.1| - 0.0026 18.0 2.9 1.2 9.5 0.2 2.7 2 0 0 2 2 2 2 Granulin Tenui_PVC2 PF06656.11 gi|154149768|ref|YP_001403386.1| - 0.02 12.9 0.2 0.54 8.1 0.0 2.0 2 0 0 2 2 2 0 Tenuivirus PVC2 protein cNMP_binding PF00027.29 gi|154149768|ref|YP_001403386.1| - 0.16 12.0 0.1 1.4 9.0 0.0 1.9 2 0 0 2 2 2 0 Cyclic nucleotide-binding domain Trp_syntA PF00290.20 gi|154149769|ref|YP_001403387.1| - 1.6e-92 309.0 0.1 1.9e-92 308.8 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|154149769|ref|YP_001403387.1| - 3.9e-07 29.8 0.0 4.7e-06 26.2 0.0 2.0 1 1 1 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|154149769|ref|YP_001403387.1| - 0.002 17.5 0.2 0.014 14.8 0.1 2.2 3 0 0 3 3 3 1 Thiazole biosynthesis protein ThiG PcrB PF01884.17 gi|154149769|ref|YP_001403387.1| - 0.0026 17.3 0.2 0.23 10.9 0.0 2.9 2 1 1 3 3 3 1 PcrB family FMN_dh PF01070.18 gi|154149769|ref|YP_001403387.1| - 0.012 14.6 0.0 0.19 10.7 0.0 2.2 1 1 0 2 2 2 0 FMN-dependent dehydrogenase NMO PF03060.15 gi|154149769|ref|YP_001403387.1| - 0.015 14.7 0.4 0.028 13.8 0.1 1.5 2 0 0 2 2 2 0 Nitronate monooxygenase IGPS PF00218.21 gi|154149769|ref|YP_001403387.1| - 0.015 14.5 0.0 0.72 9.0 0.0 2.1 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|154149769|ref|YP_001403387.1| - 0.031 13.5 0.1 0.092 11.9 0.0 1.8 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase PALP PF00291.25 gi|154149770|ref|YP_001403388.1| - 2.9e-48 164.8 0.2 3.4e-48 164.6 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PRAI PF00697.22 gi|154149771|ref|YP_001403389.1| - 1.1e-26 93.9 0.0 4.2e-26 91.9 0.0 1.7 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase UPF0180 PF03698.13 gi|154149771|ref|YP_001403389.1| - 0.011 15.8 0.0 0.02 15.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) BtpA PF03437.15 gi|154149771|ref|YP_001403389.1| - 0.043 13.3 0.1 0.078 12.4 0.1 1.4 1 0 0 1 1 1 0 BtpA family Peripla_BP_2 PF01497.18 gi|154149771|ref|YP_001403389.1| - 0.058 12.9 0.0 0.12 11.9 0.0 1.5 2 0 0 2 2 2 0 Periplasmic binding protein TMP-TENI PF02581.17 gi|154149771|ref|YP_001403389.1| - 0.061 12.7 0.2 0.92 8.8 0.1 2.3 2 1 0 2 2 2 0 Thiamine monophosphate synthase IGPS PF00218.21 gi|154149772|ref|YP_001403390.1| - 1.3e-69 234.2 0.0 1.5e-69 234.0 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 gi|154149772|ref|YP_001403390.1| - 0.077 12.8 0.0 0.13 12.0 0.0 1.4 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Glycos_transf_3 PF00591.21 gi|154149773|ref|YP_001403391.1| - 1.2e-98 329.8 2.9 1.8e-98 329.2 2.9 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|154149773|ref|YP_001403391.1| - 9.4e-22 76.6 1.8 9.4e-22 76.6 1.8 2.4 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain GATase PF00117.28 gi|154149774|ref|YP_001403392.1| - 3e-49 167.4 0.0 3.6e-49 167.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|154149774|ref|YP_001403392.1| - 2.5e-08 33.9 0.1 6.5e-07 29.3 0.2 2.6 2 1 0 2 2 2 1 Peptidase C26 Chorismate_bind PF00425.18 gi|154149775|ref|YP_001403393.1| - 1.4e-100 336.2 0.0 2.6e-100 335.2 0.0 1.5 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|154149775|ref|YP_001403393.1| - 1.3e-34 119.4 0.0 2.8e-31 108.6 0.0 2.7 2 1 0 2 2 2 2 Anthranilate synthase component I, N terminal region Tho1_MOS11_C PF18592.1 gi|154149775|ref|YP_001403393.1| - 0.056 13.3 0.9 1.6 8.6 0.5 2.5 2 1 0 2 2 2 0 Tho1/MOS11 C-terminal domain TMEM169 PF15052.6 gi|154149775|ref|YP_001403393.1| - 0.17 12.0 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 TMEM169 protein family MS_channel PF00924.18 gi|154149776|ref|YP_001403394.1| - 0.011 15.3 3.5 0.015 14.8 3.5 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel EIID-AGA PF03613.14 gi|154149776|ref|YP_001403394.1| - 0.46 9.6 3.2 0.59 9.3 3.2 1.1 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component SHR3_chaperone PF08229.11 gi|154149777|ref|YP_001403395.1| - 3.2 6.7 6.8 0.37 9.7 0.2 2.2 1 1 1 2 2 2 0 ER membrane protein SH3 Orai-1 PF07856.12 gi|154149777|ref|YP_001403395.1| - 3.7 7.2 9.3 7.7 6.2 6.9 2.1 1 1 1 2 2 2 0 Mediator of CRAC channel activity zinc_ribbon_6 PF14599.6 gi|154149779|ref|YP_001403397.1| - 0.0024 17.8 3.4 0.017 15.1 0.3 2.1 1 1 1 2 2 2 2 Zinc-ribbon Molybdop_Fe4S4 PF04879.16 gi|154149779|ref|YP_001403397.1| - 0.019 15.0 2.4 0.023 14.7 2.4 1.2 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain OrfB_Zn_ribbon PF07282.11 gi|154149779|ref|YP_001403397.1| - 0.03 14.2 1.3 0.031 14.2 1.3 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Radical_SAM PF04055.21 gi|154149780|ref|YP_001403398.1| - 8.7e-08 32.7 0.3 1.6e-07 31.8 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|154149780|ref|YP_001403398.1| - 2.5e-06 27.8 0.0 5.1e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|154149780|ref|YP_001403398.1| - 0.001 19.2 0.0 0.0031 17.6 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Exc PF07825.11 gi|154149780|ref|YP_001403398.1| - 0.039 13.9 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Excisionase-like protein Arch_flagellin PF01917.16 gi|154149781|ref|YP_001403399.1| - 0.005 17.0 0.0 0.0074 16.5 0.0 1.3 1 0 0 1 1 1 1 Archaebacterial flagellin Peptidase_M48 PF01435.18 gi|154149783|ref|YP_001403401.1| - 4.3e-41 140.9 0.0 5.7e-41 140.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|154149783|ref|YP_001403401.1| - 9.8e-08 31.5 3.1 1.8e-07 30.7 0.6 2.2 2 0 0 2 2 2 1 BlaR1 peptidase M56 EI24 PF07264.11 gi|154149783|ref|YP_001403401.1| - 0.011 16.0 8.1 0.33 11.2 2.2 2.2 2 0 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) Peptidase_M76 PF09768.9 gi|154149783|ref|YP_001403401.1| - 0.097 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family SprT-like PF10263.9 gi|154149783|ref|YP_001403401.1| - 0.14 12.0 0.1 0.23 11.3 0.1 1.3 1 0 0 1 1 1 0 SprT-like family DUF1129 PF06570.11 gi|154149783|ref|YP_001403401.1| - 3.3 7.1 9.2 2.5 7.5 3.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF1917 PF08939.10 gi|154149784|ref|YP_001403402.1| - 3.9e-21 76.1 0.1 5.6e-21 75.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1917) Ribosomal_L40e PF01020.17 gi|154149785|ref|YP_001403403.1| - 1.7e-05 24.6 6.3 2e-05 24.4 6.3 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|154149785|ref|YP_001403403.1| - 0.00012 21.6 1.9 0.0002 21.0 1.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|154149785|ref|YP_001403403.1| - 0.00025 20.3 1.7 0.00031 20.0 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|154149785|ref|YP_001403403.1| - 0.001 19.0 0.8 0.0011 19.0 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|154149785|ref|YP_001403403.1| - 0.0073 16.0 4.3 0.013 15.1 4.3 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.9 gi|154149785|ref|YP_001403403.1| - 0.085 12.9 1.5 5 7.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RanBP PF00641.18 gi|154149785|ref|YP_001403403.1| - 0.23 10.8 4.8 0.58 9.5 4.5 1.8 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others Ham1p_like PF01725.16 gi|154149786|ref|YP_001403404.1| - 1.5e-46 158.7 0.0 1.7e-46 158.5 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Peptidase_M22 PF00814.25 gi|154149787|ref|YP_001403405.1| - 1.1e-77 261.4 0.0 1.5e-77 260.9 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.14 gi|154149787|ref|YP_001403405.1| - 1.3e-07 31.2 0.1 6.1e-07 29.0 0.1 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 gi|154149787|ref|YP_001403405.1| - 1.1e-06 28.4 0.0 2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|154149787|ref|YP_001403405.1| - 1.8e-05 24.8 0.1 0.0026 17.7 0.1 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|154149787|ref|YP_001403405.1| - 8.5e-05 22.0 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain EcKinase PF02958.20 gi|154149787|ref|YP_001403405.1| - 0.0017 17.8 0.0 0.0026 17.1 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase Choline_kinase PF01633.20 gi|154149787|ref|YP_001403405.1| - 0.023 14.3 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Choline/ethanolamine kinase Pkinase_Tyr PF07714.17 gi|154149787|ref|YP_001403405.1| - 0.062 12.6 0.0 0.096 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein tyrosine kinase Pkinase_fungal PF17667.1 gi|154149787|ref|YP_001403405.1| - 0.062 12.1 0.0 0.094 11.5 0.0 1.2 1 0 0 1 1 1 0 Fungal protein kinase Ribosomal_S27 PF01599.19 gi|154149788|ref|YP_001403406.1| - 5.9e-20 71.2 3.6 7e-20 70.9 3.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a IBR PF01485.21 gi|154149788|ref|YP_001403406.1| - 0.0017 18.6 0.3 0.002 18.3 0.3 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain Nudix_N_2 PF14803.6 gi|154149788|ref|YP_001403406.1| - 0.0021 18.0 5.4 0.0092 15.9 5.4 1.9 1 1 0 1 1 1 1 Nudix N-terminal DZR PF12773.7 gi|154149788|ref|YP_001403406.1| - 0.0038 17.2 0.7 0.0058 16.6 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|154149788|ref|YP_001403406.1| - 0.0043 16.9 0.4 0.0053 16.7 0.4 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|154149788|ref|YP_001403406.1| - 0.015 15.0 4.3 0.31 10.8 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Baculo_ME53 PF06061.11 gi|154149788|ref|YP_001403406.1| - 0.017 14.3 0.8 0.018 14.3 0.8 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 DUF1451 PF07295.11 gi|154149788|ref|YP_001403406.1| - 0.018 15.1 0.5 0.018 15.1 0.5 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain MqsA_antitoxin PF15731.5 gi|154149788|ref|YP_001403406.1| - 0.022 14.9 0.1 0.022 14.9 0.1 1.2 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA RNA_POL_M_15KD PF02150.16 gi|154149788|ref|YP_001403406.1| - 0.022 14.6 1.2 0.047 13.6 1.2 1.5 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|154149788|ref|YP_001403406.1| - 0.028 14.1 2.3 0.43 10.3 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L37e PF01907.19 gi|154149788|ref|YP_001403406.1| - 0.046 13.9 2.8 0.076 13.2 2.8 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e NOB1_Zn_bind PF08772.11 gi|154149788|ref|YP_001403406.1| - 0.072 13.3 4.5 0.28 11.4 0.4 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.12 gi|154149788|ref|YP_001403406.1| - 0.088 13.0 2.0 0.12 12.6 2.0 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Lar_restr_allev PF14354.6 gi|154149788|ref|YP_001403406.1| - 0.09 13.2 2.1 0.09 13.2 2.1 1.5 2 0 0 2 2 1 0 Restriction alleviation protein Lar zinc_ribbon_13 PF09855.9 gi|154149788|ref|YP_001403406.1| - 0.091 12.9 3.2 0.18 12.0 0.3 2.2 1 1 2 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.6 gi|154149788|ref|YP_001403406.1| - 0.67 9.4 8.2 13 5.4 8.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S24e PF01282.19 gi|154149789|ref|YP_001403407.1| - 3.3e-20 71.8 0.0 4.1e-20 71.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e pKID PF02173.17 gi|154149789|ref|YP_001403407.1| - 0.25 10.8 0.2 0.25 10.8 0.2 1.7 2 0 0 2 2 2 0 pKID domain DUF359 PF04019.12 gi|154149790|ref|YP_001403408.1| - 5.2e-38 129.5 0.0 6.6e-38 129.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.13 gi|154149791|ref|YP_001403409.1| - 6.7e-13 48.5 0.1 9.1e-13 48.1 0.1 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger PHF5 PF03660.14 gi|154149791|ref|YP_001403409.1| - 0.0013 19.0 0.2 0.0013 18.9 0.2 1.1 1 0 0 1 1 1 1 PHF5-like protein RecR PF02132.15 gi|154149791|ref|YP_001403409.1| - 0.07 12.7 2.4 0.096 12.3 2.4 1.2 1 0 0 1 1 1 0 RecR protein SHS2_Rpb7-N PF03876.17 gi|154149792|ref|YP_001403410.1| - 7.7e-20 71.0 0.1 1.4e-19 70.2 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|154149792|ref|YP_001403410.1| - 1.9e-12 47.3 1.5 2.5e-12 47.0 0.1 2.0 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|154149792|ref|YP_001403410.1| - 4.6e-05 23.6 0.4 0.00016 21.9 0.4 2.0 1 1 0 1 1 1 1 RNA polymerase III subunit Rpc25 PIN_9 PF18477.1 gi|154149793|ref|YP_001403411.1| - 2.1e-23 82.9 0.0 2.5e-23 82.6 0.0 1.0 1 0 0 1 1 1 1 PIN like domain DUF5615 PF18480.1 gi|154149793|ref|YP_001403411.1| - 0.0079 15.9 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) RNase_Zc3h12a PF11977.8 gi|154149793|ref|YP_001403411.1| - 0.026 14.3 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain Fcf1 PF04900.12 gi|154149793|ref|YP_001403411.1| - 0.12 12.8 0.0 0.14 12.5 0.0 1.1 1 0 0 1 1 1 0 Fcf1 eIF2_C PF09173.11 gi|154149794|ref|YP_001403412.1| - 4.2e-31 107.0 0.4 1.3e-30 105.5 0.4 1.9 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|154149794|ref|YP_001403412.1| - 1.2e-30 106.5 1.0 6.6e-30 104.1 1.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|154149794|ref|YP_001403412.1| - 4.9e-08 33.3 1.0 4.9e-08 33.3 1.0 2.0 2 0 0 2 2 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|154149794|ref|YP_001403412.1| - 5.9e-06 26.3 0.2 0.0019 18.1 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1 PF01926.23 gi|154149794|ref|YP_001403412.1| - 1.5e-05 25.0 0.0 3.4e-05 23.9 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|154149794|ref|YP_001403412.1| - 0.0021 17.6 1.3 0.32 10.5 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|154149794|ref|YP_001403412.1| - 0.0083 16.2 0.1 0.051 13.6 0.0 2.3 3 1 1 4 4 4 1 Dynamin family DnaJ_CXXCXGXG PF00684.19 gi|154149794|ref|YP_001403412.1| - 0.023 15.1 0.5 0.052 13.9 0.5 1.6 1 0 0 1 1 1 0 DnaJ central domain MMR_HSR1_Xtn PF16897.5 gi|154149794|ref|YP_001403412.1| - 0.038 14.0 0.1 0.083 12.9 0.1 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|154149794|ref|YP_001403412.1| - 0.081 12.7 1.7 5.9 6.6 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation zinc-ribbons_6 PF07191.12 gi|154149794|ref|YP_001403412.1| - 0.085 12.9 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|154149794|ref|YP_001403412.1| - 0.14 12.2 4.7 0.53 10.3 0.5 2.4 1 1 2 3 3 3 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|154149794|ref|YP_001403412.1| - 1 9.5 4.2 2.9 8.1 4.2 1.8 1 0 0 1 1 1 0 Zinc ribbon domain DUF2098 PF09871.9 gi|154149795|ref|YP_001403413.1| - 2.2e-21 76.0 0.0 2.4e-21 75.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) STT3 PF02516.14 gi|154149796|ref|YP_001403414.1| - 3.9e-28 98.6 34.6 6.9e-28 97.8 34.6 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|154149796|ref|YP_001403414.1| - 2.1e-12 47.1 0.3 2.1e-12 47.1 0.3 2.4 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain DUF2070 PF09843.9 gi|154149796|ref|YP_001403414.1| - 2.9 6.1 26.5 0.7 8.1 0.2 2.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) DUF3040 PF11239.8 gi|154149796|ref|YP_001403414.1| - 6.7 7.1 0.0 6.7 7.1 0.0 5.7 4 2 2 6 6 6 0 Protein of unknown function (DUF3040) Glyco_trans_1_4 PF13692.6 gi|154149797|ref|YP_001403415.1| - 7.5e-16 58.8 0.0 1.2e-15 58.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|154149797|ref|YP_001403415.1| - 8e-14 52.0 5.1 1.6e-13 51.1 5.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|154149797|ref|YP_001403415.1| - 1.4e-12 47.5 0.0 2.7e-12 46.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|154149797|ref|YP_001403415.1| - 1e-09 39.0 0.7 1.7e-09 38.3 0.7 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|154149797|ref|YP_001403415.1| - 2.7e-06 27.7 0.0 8.7e-06 26.0 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Hexapep PF00132.24 gi|154149798|ref|YP_001403416.1| - 1.6e-23 81.5 16.7 1.8e-06 27.4 0.0 5.0 3 1 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|154149798|ref|YP_001403416.1| - 5.8e-15 54.8 15.6 0.00011 21.9 1.2 5.3 6 0 0 6 6 6 4 Hexapeptide repeat of succinyl-transferase SIS PF01380.22 gi|154149799|ref|YP_001403417.1| - 6.8e-49 165.1 0.1 3.1e-23 82.1 0.2 2.6 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|154149799|ref|YP_001403417.1| - 6.3e-22 78.2 0.2 1.4e-21 77.1 0.2 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|154149799|ref|YP_001403417.1| - 1.3e-18 67.1 0.0 2.3e-18 66.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|154149799|ref|YP_001403417.1| - 0.0063 15.4 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|154149799|ref|YP_001403417.1| - 0.077 13.0 0.3 18 5.4 0.0 2.7 3 0 0 3 3 3 0 SIS domain NTP_transferase PF00483.23 gi|154149800|ref|YP_001403418.1| - 4.9e-32 111.5 0.0 6.6e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|154149800|ref|YP_001403418.1| - 6.2e-21 73.3 32.0 5.3e-09 35.4 2.6 4.9 2 1 4 6 6 6 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|154149800|ref|YP_001403418.1| - 3e-16 60.2 0.0 5.4e-16 59.4 0.0 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|154149800|ref|YP_001403418.1| - 2e-08 33.8 20.1 9e-07 28.5 4.5 4.9 5 0 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|154149800|ref|YP_001403418.1| - 1.3e-06 28.3 0.1 2.2e-06 27.6 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|154149800|ref|YP_001403418.1| - 1.5e-06 26.6 0.1 1.5e-05 23.4 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4954) Glycos_transf_2 PF00535.26 gi|154149800|ref|YP_001403418.1| - 0.028 14.2 0.1 0.049 13.4 0.1 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 AhpC-TSA_2 PF13911.6 gi|154149800|ref|YP_001403418.1| - 0.084 13.0 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Tim17 PF02466.19 gi|154149800|ref|YP_001403418.1| - 0.097 13.1 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family NTP_transferase PF00483.23 gi|154149801|ref|YP_001403419.1| - 1.9e-37 129.2 0.0 2.7e-37 128.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|154149801|ref|YP_001403419.1| - 2.5e-18 65.0 27.6 5.1e-08 32.3 1.5 4.4 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|154149801|ref|YP_001403419.1| - 1e-15 58.5 0.1 1.2e-15 58.2 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|154149801|ref|YP_001403419.1| - 1.8e-08 34.0 22.0 1.2e-06 28.1 0.4 4.6 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|154149801|ref|YP_001403419.1| - 0.00095 19.0 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|154149801|ref|YP_001403419.1| - 0.023 12.8 2.2 0.037 12.2 1.8 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) CTP_transf_3 PF02348.19 gi|154149801|ref|YP_001403419.1| - 0.16 11.8 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase PGM_PMM_I PF02878.16 gi|154149802|ref|YP_001403420.1| - 1.4e-27 96.1 0.0 3e-27 95.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|154149802|ref|YP_001403420.1| - 7.4e-22 77.9 0.1 1.5e-21 76.9 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|154149802|ref|YP_001403420.1| - 1.3e-14 54.3 0.0 2.5e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|154149802|ref|YP_001403420.1| - 1.7e-10 40.9 0.1 5.4e-10 39.3 0.1 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|154149802|ref|YP_001403420.1| - 0.037 14.2 0.8 0.096 12.9 0.2 1.9 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain DUF364 PF04016.12 gi|154149803|ref|YP_001403421.1| - 0.0065 16.0 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation Cyclase PF04199.13 gi|154149804|ref|YP_001403422.1| - 1.2e-21 77.3 0.0 1.7e-21 76.9 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase PCMT PF01135.19 gi|154149805|ref|YP_001403423.1| - 1.1e-60 204.9 0.0 1.3e-60 204.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|154149805|ref|YP_001403423.1| - 4.3e-07 29.3 0.0 6.4e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|154149805|ref|YP_001403423.1| - 2.2e-05 25.1 0.0 3.2e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154149805|ref|YP_001403423.1| - 0.0002 21.2 0.0 0.00028 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154149805|ref|YP_001403423.1| - 0.00051 20.6 0.0 0.00077 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|154149805|ref|YP_001403423.1| - 0.0062 16.2 0.0 0.0092 15.6 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|154149805|ref|YP_001403423.1| - 0.0097 15.5 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|154149805|ref|YP_001403423.1| - 0.043 13.8 0.0 0.061 13.3 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain SAM_MT PF04445.13 gi|154149805|ref|YP_001403423.1| - 0.048 13.1 0.3 0.067 12.6 0.3 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Cons_hypoth95 PF03602.15 gi|154149805|ref|YP_001403423.1| - 0.062 12.9 2.2 0.12 12.0 0.2 2.0 1 1 1 2 2 2 0 Conserved hypothetical protein 95 DUF938 PF06080.12 gi|154149805|ref|YP_001403423.1| - 0.094 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_4 PF02390.17 gi|154149805|ref|YP_001403423.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_23 PF13489.6 gi|154149805|ref|YP_001403423.1| - 0.13 12.1 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0051 PF01458.17 gi|154149806|ref|YP_001403424.1| - 5.3e-50 170.1 0.3 7.2e-50 169.7 0.3 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|154149807|ref|YP_001403425.1| - 3.1e-22 79.6 0.0 4.4e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154149807|ref|YP_001403425.1| - 1.7e-07 31.4 0.0 0.001 18.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|154149807|ref|YP_001403425.1| - 0.00045 19.9 0.1 0.00082 19.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|154149807|ref|YP_001403425.1| - 0.001 18.7 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|154149807|ref|YP_001403425.1| - 0.0017 18.3 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|154149807|ref|YP_001403425.1| - 0.002 17.9 0.0 0.005 16.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|154149807|ref|YP_001403425.1| - 0.0022 17.5 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain cobW PF02492.19 gi|154149807|ref|YP_001403425.1| - 0.0097 15.5 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 gi|154149807|ref|YP_001403425.1| - 0.015 15.9 0.3 0.026 15.0 0.3 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|154149807|ref|YP_001403425.1| - 0.038 13.9 0.4 0.073 13.0 0.1 1.5 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|154149807|ref|YP_001403425.1| - 0.053 13.7 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|154149807|ref|YP_001403425.1| - 0.096 11.7 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|154149807|ref|YP_001403425.1| - 0.11 12.9 0.1 0.25 11.8 0.1 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DLIC PF05783.11 gi|154149807|ref|YP_001403425.1| - 0.14 11.0 0.1 0.17 10.7 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) FtsK_SpoIIIE PF01580.18 gi|154149807|ref|YP_001403425.1| - 0.15 11.4 0.1 0.23 10.8 0.1 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|154149807|ref|YP_001403425.1| - 0.15 12.4 0.0 0.24 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SNRNP27 PF08648.12 gi|154149807|ref|YP_001403425.1| - 0.18 11.9 0.1 0.36 10.9 0.1 1.4 1 0 0 1 1 1 0 U4/U6.U5 small nuclear ribonucleoproteins Peptidase_M20 PF01546.28 gi|154149808|ref|YP_001403426.1| - 1.9e-30 106.1 0.0 3.2e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|154149808|ref|YP_001403426.1| - 4.9e-16 58.6 0.0 1.1e-15 57.5 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Ion_trans PF00520.31 gi|154149809|ref|YP_001403427.1| - 2.6e-17 62.9 12.4 6.2e-17 61.6 12.4 1.5 1 1 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|154149809|ref|YP_001403427.1| - 8.6e-14 51.3 6.4 8.6e-14 51.3 6.4 2.5 3 0 0 3 3 3 1 Ion channel Pyridoxal_deC PF00282.19 gi|154149809|ref|YP_001403427.1| - 0.14 10.9 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain GTP_EFTU PF00009.27 gi|154149810|ref|YP_001403428.1| - 5.8e-64 215.2 0.3 1e-63 214.4 0.3 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|154149810|ref|YP_001403428.1| - 4.6e-26 91.0 0.3 3.3e-25 88.2 0.0 2.4 1 1 1 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|154149810|ref|YP_001403428.1| - 6e-25 87.1 1.3 2.3e-24 85.3 0.3 2.3 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|154149810|ref|YP_001403428.1| - 1.1e-23 83.1 0.1 4.1e-23 81.2 0.0 2.1 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|154149810|ref|YP_001403428.1| - 5.5e-16 58.7 1.5 5.5e-16 58.7 1.5 3.0 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|154149810|ref|YP_001403428.1| - 0.00033 20.7 0.1 0.00093 19.3 0.1 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|154149810|ref|YP_001403428.1| - 0.09 12.6 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain Ribosomal_S7 PF00177.21 gi|154149811|ref|YP_001403429.1| - 4.7e-37 126.9 1.5 6e-37 126.6 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.25 gi|154149812|ref|YP_001403430.1| - 3.8e-46 155.4 0.3 4.8e-46 155.1 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 PTPS PF01242.19 gi|154149813|ref|YP_001403431.1| - 3.6e-32 110.9 0.0 4e-32 110.8 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Fer4_14 PF13394.6 gi|154149814|ref|YP_001403432.1| - 3.5e-16 59.4 0.1 5.1e-16 58.9 0.1 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|154149814|ref|YP_001403432.1| - 5.5e-12 46.1 0.2 7.4e-12 45.7 0.2 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|154149814|ref|YP_001403432.1| - 2.1e-11 44.5 0.1 2.6e-11 44.2 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily NUDIX PF00293.28 gi|154149815|ref|YP_001403433.1| - 2.1e-12 47.2 0.0 2.8e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Hydrolase_4 PF12146.8 gi|154149816|ref|YP_001403434.1| - 3e-08 33.2 0.0 1.6e-06 27.6 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 AXE1 PF05448.12 gi|154149816|ref|YP_001403434.1| - 0.0048 15.6 0.6 0.014 14.1 0.6 1.7 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) eRF1_2 PF03464.15 gi|154149817|ref|YP_001403435.1| - 9.9e-34 116.5 0.0 1.7e-33 115.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|154149817|ref|YP_001403435.1| - 2.2e-28 99.0 0.0 7.6e-28 97.3 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|154149817|ref|YP_001403435.1| - 4.2e-13 49.4 0.0 2.5e-12 46.9 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|154149817|ref|YP_001403435.1| - 1.6e-10 41.4 0.0 3.5e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|154149817|ref|YP_001403435.1| - 2e-08 34.6 0.0 3.3e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 Zn-ribbon_8 PF09723.10 gi|154149817|ref|YP_001403435.1| - 0.0051 16.9 2.9 0.16 12.1 0.6 2.5 2 0 0 2 2 2 1 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|154149817|ref|YP_001403435.1| - 0.02 14.8 2.9 0.18 11.7 0.2 3.1 3 0 0 3 3 3 0 zinc-ribbon domain tRNA-synt_1d PF00750.19 gi|154149818|ref|YP_001403436.1| - 7.3e-34 117.2 0.0 9.3e-34 116.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|154149818|ref|YP_001403436.1| - 6.5e-32 110.2 0.4 1.7e-31 108.9 0.4 1.8 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|154149818|ref|YP_001403436.1| - 1.4e-12 48.1 0.1 3e-11 43.8 0.1 2.9 3 0 0 3 3 3 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|154149818|ref|YP_001403436.1| - 4.1e-05 22.7 0.0 0.22 10.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|154149818|ref|YP_001403436.1| - 0.0071 15.1 0.0 0.23 10.2 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|154149818|ref|YP_001403436.1| - 0.1 11.9 0.0 0.44 9.8 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|154149818|ref|YP_001403436.1| - 0.12 10.6 0.0 0.28 9.4 0.0 1.5 2 0 0 2 2 2 0 tRNA synthetases class I (I, L, M and V) Wyosine_form PF08608.12 gi|154149819|ref|YP_001403437.1| - 4.3e-21 75.0 0.0 7.3e-21 74.3 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|154149819|ref|YP_001403437.1| - 8.4e-18 65.3 0.1 4.8e-17 62.8 0.1 2.0 1 1 0 1 1 1 1 Radical SAM superfamily tRNA-synt_2d PF01409.20 gi|154149820|ref|YP_001403438.1| - 1e-53 182.4 0.0 3.7e-49 167.4 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|154149820|ref|YP_001403438.1| - 1.8e-15 56.7 1.5 4.4e-15 55.5 1.5 1.8 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|154149820|ref|YP_001403438.1| - 5.2e-10 39.1 0.0 1.6e-07 31.0 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2b PF00587.25 gi|154149820|ref|YP_001403438.1| - 0.085 12.8 0.0 0.23 11.4 0.0 1.8 1 1 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) Response_reg PF00072.24 gi|154149821|ref|YP_001403439.1| - 1.3e-14 54.4 0.0 2.8e-14 53.2 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|154149821|ref|YP_001403439.1| - 1.7e-10 41.4 0.0 3.4e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|154149821|ref|YP_001403439.1| - 2.1e-09 37.6 0.0 1.6e-08 34.7 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|154149821|ref|YP_001403439.1| - 9.4e-06 25.6 0.0 1.7e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|154149821|ref|YP_001403439.1| - 0.012 15.6 0.2 0.047 13.7 0.0 2.1 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|154149821|ref|YP_001403439.1| - 0.014 15.6 0.0 0.059 13.6 0.0 2.1 1 1 1 2 2 2 0 PAS domain PAS_8 PF13188.7 gi|154149821|ref|YP_001403439.1| - 0.099 12.7 0.0 0.29 11.2 0.0 1.9 1 0 0 1 1 1 0 PAS domain PRK PF00485.18 gi|154149822|ref|YP_001403440.1| - 1.1e-46 159.1 0.0 1.7e-46 158.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family TsaE PF02367.17 gi|154149822|ref|YP_001403440.1| - 0.0019 18.2 0.0 0.0034 17.4 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|154149822|ref|YP_001403440.1| - 0.0025 18.3 0.0 0.0042 17.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|154149822|ref|YP_001403440.1| - 0.0082 15.2 0.0 0.013 14.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein IIGP PF05049.13 gi|154149822|ref|YP_001403440.1| - 0.013 14.6 0.1 0.019 14.1 0.1 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_29 PF13555.6 gi|154149822|ref|YP_001403440.1| - 0.029 14.1 0.0 0.069 12.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|154149822|ref|YP_001403440.1| - 0.034 14.6 0.0 0.059 13.9 0.0 1.3 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 gi|154149822|ref|YP_001403440.1| - 0.038 13.3 0.0 0.062 12.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 gi|154149822|ref|YP_001403440.1| - 0.077 13.4 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|154149822|ref|YP_001403440.1| - 0.082 12.7 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.6 gi|154149822|ref|YP_001403440.1| - 0.21 12.0 0.0 0.54 10.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF2892 PF11127.8 gi|154149823|ref|YP_001403441.1| - 0.0057 16.7 4.7 0.0057 16.7 4.7 2.5 2 1 1 3 3 3 2 Protein of unknown function (DUF2892) DUF2754 PF10953.8 gi|154149823|ref|YP_001403441.1| - 0.12 12.6 1.2 0.33 11.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2754) DUF3784 PF12650.7 gi|154149823|ref|YP_001403441.1| - 0.17 12.1 3.0 7.1 6.9 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) UbiA PF01040.18 gi|154149823|ref|YP_001403441.1| - 0.19 11.0 5.1 0.43 9.8 5.1 1.6 1 1 0 1 1 1 0 UbiA prenyltransferase family DUF373 PF04123.13 gi|154149823|ref|YP_001403441.1| - 0.52 9.7 3.0 0.66 9.4 3.0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF373) HTH_3 PF01381.22 gi|154149824|ref|YP_001403442.1| - 5.8e-13 48.7 0.0 6.7e-13 48.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|154149824|ref|YP_001403442.1| - 1.5e-06 28.5 0.0 1.8e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|154149824|ref|YP_001403442.1| - 2.6e-06 27.4 0.0 2.9e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|154149824|ref|YP_001403442.1| - 0.00025 21.4 0.0 0.00028 21.2 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|154149824|ref|YP_001403442.1| - 0.0072 16.2 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|154149824|ref|YP_001403442.1| - 0.048 13.6 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MerR PF00376.23 gi|154149824|ref|YP_001403442.1| - 0.17 11.7 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 MerR family regulatory protein DEAD PF00270.29 gi|154149825|ref|YP_001403443.1| - 9.8e-31 106.9 0.0 1.5e-30 106.2 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|154149825|ref|YP_001403443.1| - 3.1e-21 75.9 0.1 9.6e-21 74.4 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|154149825|ref|YP_001403443.1| - 1.3e-10 41.6 0.0 1.2e-08 35.3 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|154149825|ref|YP_001403443.1| - 4e-06 26.9 0.0 7e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit RNase_H_2 PF13482.6 gi|154149826|ref|YP_001403444.1| - 3.5e-36 124.7 0.0 4.7e-36 124.3 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|154149826|ref|YP_001403444.1| - 0.00042 20.1 0.0 0.0012 18.5 0.0 1.7 2 0 0 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_lambd_f PF10391.9 gi|154149826|ref|YP_001403444.1| - 0.0012 18.7 0.0 0.0032 17.3 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DNA_pol_B_exo1 PF03104.19 gi|154149826|ref|YP_001403444.1| - 0.0012 18.0 0.0 0.0017 17.6 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain HHH_5 PF14520.6 gi|154149826|ref|YP_001403444.1| - 0.0045 17.6 0.0 0.03 14.9 0.0 2.3 2 1 0 2 2 2 1 Helix-hairpin-helix domain TPR_6 PF13174.6 gi|154149826|ref|YP_001403444.1| - 0.13 12.9 0.2 1.2 9.9 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat GATase PF00117.28 gi|154149827|ref|YP_001403445.1| - 5.1e-13 49.2 0.0 6.7e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|154149827|ref|YP_001403445.1| - 7.1e-05 22.7 0.0 0.0012 18.7 0.0 2.1 2 0 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|154149827|ref|YP_001403445.1| - 0.0099 15.5 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|154149827|ref|YP_001403445.1| - 0.024 14.4 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family Hydrolase_6 PF13344.6 gi|154149828|ref|YP_001403446.1| - 8.7e-22 77.1 0.0 1.8e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|154149828|ref|YP_001403446.1| - 1.4e-17 63.5 1.9 2.1e-17 62.9 0.0 2.1 2 1 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|154149828|ref|YP_001403446.1| - 1.4e-09 38.6 1.8 3.7e-05 24.1 0.5 2.9 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|154149828|ref|YP_001403446.1| - 1.5e-08 34.9 0.0 2.8e-06 27.5 0.0 2.5 2 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.14 gi|154149828|ref|YP_001403446.1| - 0.046 13.3 0.0 0.096 12.3 0.0 1.5 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) PGP_phosphatase PF09419.10 gi|154149828|ref|YP_001403446.1| - 0.081 12.5 0.1 0.19 11.3 0.1 1.6 1 0 0 1 1 1 0 Mitochondrial PGP phosphatase Transglut_core PF01841.19 gi|154149829|ref|YP_001403447.1| - 0.0076 16.7 0.1 0.33 11.4 0.0 2.9 3 0 0 3 3 3 1 Transglutaminase-like superfamily YjeF_N PF03853.15 gi|154149829|ref|YP_001403447.1| - 0.012 15.5 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus AAA_13 PF13166.6 gi|154149829|ref|YP_001403447.1| - 0.045 12.4 0.1 0.061 12.0 0.1 1.1 1 0 0 1 1 1 0 AAA domain ATG16 PF08614.11 gi|154149829|ref|YP_001403447.1| - 0.051 13.8 3.6 2.2 8.4 2.6 2.6 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) TraE PF05309.11 gi|154149829|ref|YP_001403447.1| - 0.14 11.5 2.4 0.24 10.7 0.1 2.3 2 0 0 2 2 2 0 TraE protein SHE3 PF17078.5 gi|154149829|ref|YP_001403447.1| - 0.23 11.2 1.9 0.38 10.4 1.9 1.3 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 N6_N4_Mtase PF01555.18 gi|154149830|ref|YP_001403448.1| - 3.4e-35 121.8 0.1 4.4e-35 121.5 0.1 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 gi|154149830|ref|YP_001403448.1| - 5.3e-06 27.0 0.0 0.018 15.7 0.0 2.9 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154149830|ref|YP_001403448.1| - 7.7e-05 23.3 0.1 0.046 14.4 0.0 2.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|154149830|ref|YP_001403448.1| - 0.00017 21.2 0.0 0.061 12.9 0.0 2.2 2 0 0 2 2 2 2 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|154149830|ref|YP_001403448.1| - 0.00082 19.1 0.0 0.11 12.1 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 N6_Mtase PF02384.16 gi|154149830|ref|YP_001403448.1| - 0.078 12.2 0.0 0.18 11.0 0.0 1.5 2 0 0 2 2 2 0 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|154149830|ref|YP_001403448.1| - 0.087 12.6 0.0 9 6.1 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154149830|ref|YP_001403448.1| - 0.14 12.9 0.0 30 5.4 0.0 2.6 2 1 0 2 2 2 0 Methyltransferase domain LVIVD PF08309.11 gi|154149831|ref|YP_001403449.1| - 2.1e-57 190.2 29.0 4.2e-11 42.0 0.4 7.4 7 0 0 7 7 7 7 LVIVD repeat SBP56 PF05694.11 gi|154149831|ref|YP_001403449.1| - 0.00051 19.0 0.0 11 4.6 0.0 4.9 2 2 3 6 6 6 2 56kDa selenium binding protein (SBP56) Beta_propel PF09826.9 gi|154149831|ref|YP_001403449.1| - 0.16 10.8 0.0 1.1 8.0 0.0 2.5 1 1 0 1 1 1 0 Beta propeller domain WIF PF02019.18 gi|154149832|ref|YP_001403450.1| - 0.087 12.5 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 WIF domain AlbA_2 PF04326.14 gi|154149834|ref|YP_001403452.1| - 1.9e-18 67.0 0.4 4.4e-18 65.8 0.4 1.7 1 0 0 1 1 1 1 Putative DNA-binding domain Mucin PF01456.17 gi|154149835|ref|YP_001403453.1| - 0.035 14.1 10.9 0.056 13.4 10.9 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein Hydrolase_6 PF13344.6 gi|154149836|ref|YP_001403454.1| - 0.041 14.0 1.3 0.34 11.0 0.2 2.7 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF724 PF05266.14 gi|154149836|ref|YP_001403454.1| - 0.09 12.6 12.7 0.18 11.6 3.8 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF724) DUF1515 PF07439.11 gi|154149836|ref|YP_001403454.1| - 0.32 11.0 2.9 11 6.1 0.0 3.6 1 1 2 4 4 4 0 Protein of unknown function (DUF1515) DUF2451 PF10474.9 gi|154149836|ref|YP_001403454.1| - 0.77 9.5 9.8 0.19 11.5 0.3 2.6 2 1 0 3 3 3 0 Protein of unknown function C-terminus (DUF2451) ABC_tran_CTD PF16326.5 gi|154149836|ref|YP_001403454.1| - 0.84 9.9 14.3 0.97 9.7 1.7 3.5 3 1 1 4 4 4 0 ABC transporter C-terminal domain SPT16 PF08644.11 gi|154149836|ref|YP_001403454.1| - 1 9.5 9.0 0.92 9.7 2.8 2.5 2 1 1 3 3 3 0 FACT complex subunit (SPT16/CDC68) Sipho_Gp157 PF05565.11 gi|154149836|ref|YP_001403454.1| - 1.3 9.0 10.7 2.7 8.0 2.0 3.3 2 1 1 3 3 3 0 Siphovirus Gp157 Nbl1_Borealin_N PF10444.9 gi|154149836|ref|YP_001403454.1| - 3.2 7.5 5.7 15 5.3 1.7 3.0 2 0 0 2 2 2 0 Nbl1 / Borealin N terminal DUF2203 PF09969.9 gi|154149836|ref|YP_001403454.1| - 4.4 8.1 13.2 17 6.1 2.2 3.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Dynamin_M PF01031.20 gi|154149836|ref|YP_001403454.1| - 4.8 6.3 12.6 1.4 8.1 2.9 2.9 1 1 2 3 3 3 0 Dynamin central region Mer2 PF09074.10 gi|154149836|ref|YP_001403454.1| - 7.9 6.2 21.6 0.19 11.5 9.3 2.9 1 1 1 3 3 3 0 Mer2 Sugarporin_N PF11471.8 gi|154149837|ref|YP_001403455.1| - 0.1 12.6 4.4 5.6 7.0 0.1 2.7 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension MarR_2 PF12802.7 gi|154149838|ref|YP_001403456.1| - 4.6e-06 26.4 0.0 9.1e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|154149838|ref|YP_001403456.1| - 1.2e-05 25.0 0.0 2.3e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|154149838|ref|YP_001403456.1| - 0.00075 19.3 0.0 0.0016 18.2 0.1 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|154149838|ref|YP_001403456.1| - 0.0013 18.6 0.0 0.0023 17.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2207 PF09972.9 gi|154149838|ref|YP_001403456.1| - 0.0014 17.5 0.0 0.0035 16.2 0.0 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2207) Penicillinase_R PF03965.16 gi|154149838|ref|YP_001403456.1| - 0.0062 16.9 0.0 0.01 16.2 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor DUF4897 PF16238.5 gi|154149838|ref|YP_001403456.1| - 0.0091 15.9 0.0 0.02 14.8 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4897) DUF4010 PF13194.6 gi|154149838|ref|YP_001403456.1| - 0.026 14.2 0.8 0.046 13.4 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4010) PaaX PF07848.12 gi|154149838|ref|YP_001403456.1| - 0.092 13.0 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein MarR PF01047.22 gi|154149838|ref|YP_001403456.1| - 0.11 12.4 0.0 0.92 9.5 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|154149838|ref|YP_001403456.1| - 0.12 12.4 0.1 0.25 11.4 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Chordopox_A13L PF05961.11 gi|154149838|ref|YP_001403456.1| - 0.26 11.5 0.3 0.84 9.9 0.0 1.9 2 0 0 2 2 2 0 Chordopoxvirus A13L protein FeoB_associated PF12669.7 gi|154149838|ref|YP_001403456.1| - 0.28 11.6 0.3 0.28 11.6 0.3 1.7 2 0 0 2 2 1 0 FeoB-associated Cys-rich membrane protein Response_reg PF00072.24 gi|154149839|ref|YP_001403457.1| - 1.2e-22 80.2 0.0 3.1e-22 78.9 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|154149839|ref|YP_001403457.1| - 1e-21 77.7 0.0 2e-21 76.7 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|154149839|ref|YP_001403457.1| - 1.4e-12 48.1 0.0 3.3e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|154149839|ref|YP_001403457.1| - 2.2e-07 31.6 0.0 5e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|154149839|ref|YP_001403457.1| - 0.0044 17.4 0.0 0.01 16.1 0.0 1.8 1 1 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|154149839|ref|YP_001403457.1| - 0.044 13.8 0.4 0.16 12.1 0.2 2.0 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|154149839|ref|YP_001403457.1| - 0.18 11.6 0.0 0.34 10.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Putative_PNPOx PF01243.20 gi|154149840|ref|YP_001403458.1| - 1.5e-18 66.7 0.0 1.9e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|154149840|ref|YP_001403458.1| - 3e-05 23.6 0.0 3.8e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like DUF447 PF04289.12 gi|154149840|ref|YP_001403458.1| - 0.012 15.3 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) FIST PF08495.10 gi|154149841|ref|YP_001403459.1| - 9e-28 97.4 2.6 7.3e-26 91.2 1.5 2.1 2 0 0 2 2 2 2 FIST N domain FIST_C PF10442.9 gi|154149841|ref|YP_001403459.1| - 1.9e-20 73.2 0.0 1.5e-19 70.3 0.0 2.1 2 0 0 2 2 2 1 FIST C domain PAS_3 PF08447.12 gi|154149842|ref|YP_001403460.1| - 2e-32 111.3 0.0 9e-16 58.0 0.1 2.9 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|154149842|ref|YP_001403460.1| - 1.7e-30 105.4 0.0 1.8e-15 56.9 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|154149842|ref|YP_001403460.1| - 2.1e-27 95.5 0.0 8.7e-15 54.9 0.0 3.6 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|154149842|ref|YP_001403460.1| - 4.2e-27 94.4 0.2 1.3e-15 57.5 0.0 4.1 4 0 0 4 4 4 2 PAS domain HATPase_c PF02518.26 gi|154149842|ref|YP_001403460.1| - 2e-11 44.4 0.0 4.7e-11 43.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|154149842|ref|YP_001403460.1| - 5.7e-08 32.9 0.0 0.00064 19.8 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|154149842|ref|YP_001403460.1| - 8.7e-08 32.0 0.0 0.037 14.0 0.0 3.9 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|154149842|ref|YP_001403460.1| - 0.0067 16.6 0.2 0.07 13.3 0.0 2.7 3 0 0 3 3 3 1 PAS fold SPOB_a PF14689.6 gi|154149842|ref|YP_001403460.1| - 0.019 14.6 0.2 0.26 11.0 0.0 2.8 3 0 0 3 3 3 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.6 gi|154149842|ref|YP_001403460.1| - 0.021 14.7 0.0 0.082 12.7 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LysM PF01476.20 gi|154149842|ref|YP_001403460.1| - 0.024 14.7 0.0 0.18 11.9 0.0 2.4 2 0 0 2 2 2 0 LysM domain DUF2336 PF10098.9 gi|154149842|ref|YP_001403460.1| - 0.077 12.5 0.8 0.17 11.3 0.8 1.5 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2336) dCache_1 PF02743.18 gi|154149842|ref|YP_001403460.1| - 0.085 12.6 0.5 0.58 9.9 0.0 2.3 2 1 0 2 2 2 0 Cache domain HisKA PF00512.25 gi|154149842|ref|YP_001403460.1| - 0.12 12.4 3.0 0.58 10.2 0.0 2.9 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain Methyltransf_25 PF13649.6 gi|154149843|ref|YP_001403461.1| - 2.5e-14 53.8 0.0 5.3e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154149843|ref|YP_001403461.1| - 3.1e-12 46.5 0.0 1.4e-10 41.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154149843|ref|YP_001403461.1| - 4.6e-11 43.2 0.0 8.8e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|154149843|ref|YP_001403461.1| - 9.8e-10 38.2 0.0 1.4e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|154149843|ref|YP_001403461.1| - 6.4e-09 35.9 0.0 9.7e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154149843|ref|YP_001403461.1| - 1.9e-08 35.0 0.0 3.7e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|154149843|ref|YP_001403461.1| - 1e-05 25.1 0.0 1.6e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|154149843|ref|YP_001403461.1| - 2.6e-05 23.9 0.1 6.7e-05 22.6 0.0 1.6 2 0 0 2 2 2 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|154149843|ref|YP_001403461.1| - 0.00077 18.8 0.0 0.0014 18.0 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|154149843|ref|YP_001403461.1| - 0.0015 17.9 0.0 0.0028 17.0 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family FtsJ PF01728.19 gi|154149843|ref|YP_001403461.1| - 0.0027 17.9 0.0 0.0046 17.1 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_18 PF12847.7 gi|154149843|ref|YP_001403461.1| - 0.0034 17.3 0.0 0.0063 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|154149843|ref|YP_001403461.1| - 0.0092 15.4 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|154149843|ref|YP_001403461.1| - 0.011 15.4 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.6 gi|154149843|ref|YP_001403461.1| - 0.023 14.7 0.0 0.075 13.0 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain MetW PF07021.12 gi|154149843|ref|YP_001403461.1| - 0.024 14.3 0.1 0.089 12.4 0.0 1.9 1 1 0 2 2 2 0 Methionine biosynthesis protein MetW P-II PF00543.22 gi|154149844|ref|YP_001403462.1| - 2.2e-31 108.5 0.5 2.4e-31 108.3 0.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Potass_KdpF PF09604.10 gi|154149844|ref|YP_001403462.1| - 0.024 14.6 0.3 0.04 13.9 0.3 1.4 1 0 0 1 1 1 0 F subunit of K+-transporting ATPase (Potass_KdpF) CdAMP_rec PF06153.11 gi|154149844|ref|YP_001403462.1| - 0.054 13.7 0.1 2.4 8.4 0.1 2.6 1 1 0 1 1 1 0 Cyclic-di-AMP receptor Aminotran_5 PF00266.19 gi|154149845|ref|YP_001403463.1| - 1.1e-60 205.6 0.0 1.3e-60 205.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|154149845|ref|YP_001403463.1| - 0.00017 21.1 0.0 0.00022 20.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|154149845|ref|YP_001403463.1| - 0.0062 15.1 0.0 0.0093 14.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme ATPase_2 PF01637.18 gi|154149846|ref|YP_001403464.1| - 0.21 11.5 0.0 0.29 11.0 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TauE PF01925.19 gi|154149849|ref|YP_001403467.1| - 2.4e-45 155.0 41.9 3e-45 154.7 41.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Vut_1 PF02592.15 gi|154149849|ref|YP_001403467.1| - 5.6 7.3 16.4 1.2 9.5 9.7 2.5 2 2 0 2 2 2 0 Putative vitamin uptake transporter Ribonucleas_3_3 PF14622.6 gi|154149851|ref|YP_001403469.1| - 2e-14 53.9 0.0 2.3e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 gi|154149851|ref|YP_001403469.1| - 2e-10 41.3 0.0 3.1e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease III domain His_Phos_1 PF00300.22 gi|154149852|ref|YP_001403470.1| - 8e-14 51.8 0.0 5.7e-13 49.0 0.0 1.9 2 0 0 2 2 2 1 Histidine phosphatase superfamily (branch 1) Isochorismatase PF00857.20 gi|154149853|ref|YP_001403471.1| - 2.9e-38 131.8 0.0 3.8e-38 131.4 0.0 1.2 1 0 0 1 1 1 1 Isochorismatase family Acetyltransf_1 PF00583.25 gi|154149853|ref|YP_001403471.1| - 2.5e-07 30.9 0.0 4.6e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|154149853|ref|YP_001403471.1| - 4.7e-05 23.3 0.0 8.2e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|154149853|ref|YP_001403471.1| - 5.1e-05 23.6 0.0 0.00011 22.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|154149853|ref|YP_001403471.1| - 0.0012 19.5 0.0 0.0027 18.4 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|154149853|ref|YP_001403471.1| - 0.051 13.6 0.0 0.13 12.2 0.0 1.8 1 0 0 1 1 1 0 FR47-like protein Rubredoxin PF00301.20 gi|154149854|ref|YP_001403472.1| - 1.6e-19 69.6 2.2 1.8e-19 69.5 2.2 1.0 1 0 0 1 1 1 1 Rubredoxin Rubredoxin_2 PF18073.1 gi|154149854|ref|YP_001403472.1| - 0.0059 16.3 4.4 0.18 11.6 1.4 2.2 2 0 0 2 2 2 2 Rubredoxin metal binding domain PHD_4 PF16866.5 gi|154149854|ref|YP_001403472.1| - 0.014 15.5 0.9 0.024 14.7 0.9 1.5 1 1 0 1 1 1 0 PHD-finger Zn-ribbon_8 PF09723.10 gi|154149854|ref|YP_001403472.1| - 0.063 13.4 4.4 1.2 9.3 4.4 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF4428 PF14471.6 gi|154149854|ref|YP_001403472.1| - 0.4 10.6 1.9 0.97 9.4 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) zf_UBZ PF18439.1 gi|154149854|ref|YP_001403472.1| - 0.47 10.1 2.7 1.7 8.3 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Wzz PF02706.15 gi|154149855|ref|YP_001403473.1| - 0.04 14.2 0.7 0.072 13.4 0.0 1.8 2 0 0 2 2 2 0 Chain length determinant protein Response_reg PF00072.24 gi|154149856|ref|YP_001403474.1| - 1.4e-22 80.0 0.2 1.8e-21 76.4 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain GAF_2 PF13185.6 gi|154149856|ref|YP_001403474.1| - 4.1e-19 69.2 0.0 9.9e-19 68.0 0.0 1.7 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|154149856|ref|YP_001403474.1| - 4.7e-14 52.8 0.0 1.3e-13 51.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|154149856|ref|YP_001403474.1| - 6.6e-09 36.0 0.0 1.8e-08 34.6 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|154149856|ref|YP_001403474.1| - 1.8e-07 31.0 0.0 5.2e-07 29.6 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|154149856|ref|YP_001403474.1| - 8.7e-05 22.5 0.0 0.0002 21.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold SPOB_a PF14689.6 gi|154149856|ref|YP_001403474.1| - 0.0015 18.2 0.0 0.0035 17.0 0.0 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_4 PF08448.10 gi|154149856|ref|YP_001403474.1| - 0.0034 17.6 0.0 0.0093 16.2 0.0 1.8 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|154149856|ref|YP_001403474.1| - 0.047 13.6 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain GAF PF01590.26 gi|154149856|ref|YP_001403474.1| - 0.15 12.7 0.0 0.28 11.8 0.0 1.5 1 0 0 1 1 1 0 GAF domain RACo_linker PF17650.1 gi|154149856|ref|YP_001403474.1| - 0.16 11.9 0.0 16 5.4 0.0 2.6 2 0 0 2 2 2 0 RACo linker region Wzt_C PF14524.6 gi|154149857|ref|YP_001403475.1| - 0.029 14.4 0.1 0.059 13.4 0.1 1.5 1 0 0 1 1 1 0 Wzt C-terminal domain fn3_5 PF06280.12 gi|154149857|ref|YP_001403475.1| - 0.074 13.7 0.4 1.7 9.3 0.0 3.0 2 1 1 3 3 3 0 Fn3-like domain NPCBM_assoc PF10633.9 gi|154149857|ref|YP_001403475.1| - 3.3 8.0 0.0 3.3 8.0 0.0 4.4 5 2 1 6 6 6 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF3494 PF11999.8 gi|154149858|ref|YP_001403476.1| - 1.8e-70 236.8 14.5 1.8e-70 236.8 14.5 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3494) TALPID3 PF15324.6 gi|154149858|ref|YP_001403476.1| - 1.9 6.1 7.4 2.5 5.6 7.4 1.0 1 0 0 1 1 1 0 Hedgehog signalling target PKD PF00801.20 gi|154149860|ref|YP_001403478.1| - 6.8e-10 38.6 0.3 6.8e-10 38.6 0.3 3.2 3 1 0 3 3 3 1 PKD domain SH3_6 PF12913.7 gi|154149860|ref|YP_001403478.1| - 0.048 13.2 0.2 0.17 11.4 0.1 2.1 2 0 0 2 2 2 0 SH3 domain (SH3b1 type) Cpn60_TCP1 PF00118.24 gi|154149862|ref|YP_001403480.1| - 2.8e-176 587.0 19.2 3.2e-176 586.8 19.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Pro_CA PF00484.19 gi|154149863|ref|YP_001403481.1| - 9.1e-44 149.5 0.0 1.1e-43 149.2 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase Eno-Rase_FAD_bd PF07055.12 gi|154149863|ref|YP_001403481.1| - 0.068 13.6 0.5 0.14 12.6 0.5 1.4 1 0 0 1 1 1 0 Enoyl reductase FAD binding domain ODC_AZ PF02100.17 gi|154149863|ref|YP_001403481.1| - 0.15 12.1 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 Ornithine decarboxylase antizyme DUF2099 PF09872.9 gi|154149865|ref|YP_001403483.1| - 8.4e-97 323.4 0.2 9.7e-97 323.2 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Cpn60_TCP1 PF00118.24 gi|154149867|ref|YP_001403485.1| - 2.8e-162 540.8 17.2 3.2e-162 540.6 17.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PGA_cap PF09587.10 gi|154149867|ref|YP_001403485.1| - 0.016 14.7 0.1 0.029 13.8 0.1 1.4 1 0 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap TPR_1 PF00515.28 gi|154149868|ref|YP_001403486.1| - 8.4e-36 120.4 1.6 7.7e-10 38.2 0.4 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154149868|ref|YP_001403486.1| - 2.9e-30 101.9 2.7 6.4e-08 32.1 0.4 4.1 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154149868|ref|YP_001403486.1| - 1.2e-25 88.9 4.4 4.3e-09 35.9 0.1 4.4 2 1 3 5 5 5 4 TPR repeat TPR_8 PF13181.6 gi|154149868|ref|YP_001403486.1| - 5.7e-22 76.0 0.2 5.3e-06 26.2 0.0 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154149868|ref|YP_001403486.1| - 2e-19 70.0 10.1 4.1e-08 33.7 0.3 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|154149868|ref|YP_001403486.1| - 3e-19 67.9 1.1 5.4e-06 26.4 0.3 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154149868|ref|YP_001403486.1| - 2.2e-18 66.3 2.1 1e-08 35.3 0.1 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154149868|ref|YP_001403486.1| - 9.3e-16 57.2 1.3 0.00012 22.7 0.1 4.1 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154149868|ref|YP_001403486.1| - 3.1e-15 56.1 0.6 1.3e-05 25.2 0.0 3.3 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154149868|ref|YP_001403486.1| - 3.8e-11 43.3 0.4 4.2e-05 24.0 0.0 2.6 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154149868|ref|YP_001403486.1| - 1.9e-08 33.8 0.0 0.083 13.0 0.0 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|154149868|ref|YP_001403486.1| - 1.7e-07 30.9 2.2 0.038 13.9 0.0 3.6 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|154149868|ref|YP_001403486.1| - 7e-07 29.5 0.2 1.2 9.9 0.1 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat BTAD PF03704.17 gi|154149868|ref|YP_001403486.1| - 3.9e-05 24.1 0.0 0.03 14.7 0.0 2.1 1 1 1 2 2 2 2 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|154149868|ref|YP_001403486.1| - 0.0001 22.4 0.3 0.7 9.9 0.1 3.8 2 1 1 3 3 3 1 Domain of Unknown Function (DUF3856) SRP_TPR_like PF17004.5 gi|154149868|ref|YP_001403486.1| - 0.012 15.7 0.0 0.13 12.3 0.0 2.3 1 1 0 1 1 1 0 Putative TPR-like repeat NARP1 PF12569.8 gi|154149868|ref|YP_001403486.1| - 0.018 14.0 0.0 4.5 6.1 0.0 2.1 1 1 1 2 2 2 0 NMDA receptor-regulated protein 1 TPR_4 PF07721.14 gi|154149868|ref|YP_001403486.1| - 0.039 14.6 1.4 14 6.6 0.0 3.2 3 1 0 3 3 3 0 Tetratricopeptide repeat TBP PF00352.21 gi|154149870|ref|YP_001403488.1| - 8.7e-48 160.2 0.2 1.6e-25 88.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|154149870|ref|YP_001403488.1| - 9.4e-06 25.7 0.0 0.092 12.9 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF1184 PF06683.11 gi|154149870|ref|YP_001403488.1| - 0.028 13.9 0.1 0.035 13.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1184) NdhS PF11623.8 gi|154149870|ref|YP_001403488.1| - 0.061 13.0 0.0 11 5.8 0.0 2.6 2 0 0 2 2 2 0 NAD(P)H dehydrogenase subunit S Ribosomal_S17e PF00833.18 gi|154149871|ref|YP_001403489.1| - 5.5e-10 39.2 0.3 5.5e-10 39.2 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S17 PPS_PS PF02006.16 gi|154149872|ref|YP_001403490.1| - 0.011 15.3 0.1 0.012 15.2 0.1 1.2 1 0 0 1 1 1 0 Phosphopantothenate/pantothenate synthetase RisS_PPD PF16524.5 gi|154149872|ref|YP_001403490.1| - 0.15 12.3 0.0 0.37 11.1 0.0 1.8 1 1 0 1 1 1 0 Periplasmic domain of Sensor histidine kinase RisS CheB_methylest PF01339.17 gi|154149874|ref|YP_001403492.1| - 3.3e-55 186.4 0.0 9.9e-55 184.9 0.0 1.9 1 0 0 1 1 1 1 CheB methylesterase CheR PF01739.18 gi|154149874|ref|YP_001403492.1| - 6.2e-52 175.9 0.0 1e-51 175.2 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain PAS_10 PF13596.6 gi|154149874|ref|YP_001403492.1| - 2e-30 105.5 0.2 8.2e-27 93.9 0.0 3.8 4 0 0 4 4 3 1 PAS domain PAS_4 PF08448.10 gi|154149874|ref|YP_001403492.1| - 8.2e-16 58.2 0.1 6.4e-09 36.0 0.0 3.9 3 0 0 3 3 3 2 PAS fold CheR_N PF03705.15 gi|154149874|ref|YP_001403492.1| - 2.5e-15 55.9 0.6 5.1e-15 54.9 0.6 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain PAS PF00989.25 gi|154149874|ref|YP_001403492.1| - 6.5e-15 55.1 0.2 3e-10 40.1 0.0 4.1 3 1 0 3 3 3 1 PAS fold PAS_9 PF13426.7 gi|154149874|ref|YP_001403492.1| - 5.9e-08 32.9 0.1 4.5e-06 26.9 0.0 3.4 3 0 0 3 3 2 1 PAS domain Spc7 PF08317.11 gi|154149874|ref|YP_001403492.1| - 0.00017 20.6 14.4 0.0003 19.8 14.4 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF1664 PF07889.12 gi|154149874|ref|YP_001403492.1| - 0.00076 19.5 7.0 0.0023 17.9 7.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) DUF3450 PF11932.8 gi|154149874|ref|YP_001403492.1| - 0.00081 18.8 10.7 0.0017 17.7 10.7 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) AIP3 PF03915.13 gi|154149874|ref|YP_001403492.1| - 0.00082 18.6 7.2 0.0014 17.8 7.2 1.3 1 0 0 1 1 1 1 Actin interacting protein 3 ATG16 PF08614.11 gi|154149874|ref|YP_001403492.1| - 0.00086 19.6 17.7 0.0015 18.8 17.7 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) PAS_8 PF13188.7 gi|154149874|ref|YP_001403492.1| - 0.00097 19.1 0.0 0.0033 17.4 0.0 2.0 1 0 0 1 1 1 1 PAS domain Golgin_A5 PF09787.9 gi|154149874|ref|YP_001403492.1| - 0.0028 17.2 14.6 0.0028 17.2 14.6 1.7 2 0 0 2 2 1 1 Golgin subfamily A member 5 WEMBL PF05701.11 gi|154149874|ref|YP_001403492.1| - 0.0038 16.0 12.5 0.0062 15.3 12.5 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light DUF4795 PF16043.5 gi|154149874|ref|YP_001403492.1| - 0.0045 16.6 8.1 0.0084 15.7 8.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) CENP-F_leu_zip PF10473.9 gi|154149874|ref|YP_001403492.1| - 0.0046 17.0 20.0 0.0093 16.0 20.0 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Leu_zip PF15294.6 gi|154149874|ref|YP_001403492.1| - 0.0064 16.0 11.9 0.012 15.1 11.9 1.4 1 0 0 1 1 1 1 Leucine zipper HMMR_N PF15905.5 gi|154149874|ref|YP_001403492.1| - 0.0074 15.8 17.3 0.013 15.0 17.3 1.2 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal DUF812 PF05667.11 gi|154149874|ref|YP_001403492.1| - 0.014 14.3 10.4 0.026 13.5 10.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Exonuc_VII_L PF02601.15 gi|154149874|ref|YP_001403492.1| - 0.016 14.8 4.6 0.029 14.0 4.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit HAUS-augmin3 PF14932.6 gi|154149874|ref|YP_001403492.1| - 0.017 14.7 10.4 0.18 11.3 12.1 1.8 2 0 0 2 2 1 0 HAUS augmin-like complex subunit 3 HOOK PF05622.12 gi|154149874|ref|YP_001403492.1| - 0.056 11.6 14.1 0.089 10.9 14.1 1.2 1 0 0 1 1 1 0 HOOK protein Med30 PF11315.8 gi|154149874|ref|YP_001403492.1| - 0.057 13.6 7.2 0.12 12.6 7.2 1.5 1 0 0 1 1 1 0 Mediator complex subunit 30 KASH_CCD PF14662.6 gi|154149874|ref|YP_001403492.1| - 0.057 13.2 16.8 0.023 14.5 14.2 1.5 2 0 0 2 2 1 0 Coiled-coil region of CCDC155 or KASH V_ATPase_I PF01496.19 gi|154149874|ref|YP_001403492.1| - 0.059 11.3 4.9 0.086 10.8 4.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Fez1 PF06818.15 gi|154149874|ref|YP_001403492.1| - 0.063 13.7 10.4 0.12 12.8 10.4 1.4 1 0 0 1 1 1 0 Fez1 DUF3552 PF12072.8 gi|154149874|ref|YP_001403492.1| - 0.065 12.6 14.6 0.13 11.6 14.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DUF3584 PF12128.8 gi|154149874|ref|YP_001403492.1| - 0.079 10.5 10.7 0.12 9.8 10.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) GAS PF13851.6 gi|154149874|ref|YP_001403492.1| - 0.08 12.3 15.2 0.16 11.3 15.2 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding IFT57 PF10498.9 gi|154149874|ref|YP_001403492.1| - 0.081 11.9 12.8 0.15 11.0 12.8 1.3 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 ZapB PF06005.12 gi|154149874|ref|YP_001403492.1| - 0.084 13.3 24.9 14 6.2 24.9 2.6 1 1 0 1 1 1 0 Cell division protein ZapB Arfaptin PF06456.13 gi|154149874|ref|YP_001403492.1| - 0.09 12.3 6.0 0.077 12.5 0.6 2.3 1 1 1 2 2 2 0 Arfaptin-like domain PACT_coil_coil PF10495.9 gi|154149874|ref|YP_001403492.1| - 0.1 13.2 0.7 0.32 11.6 0.7 1.9 1 0 0 1 1 1 0 Pericentrin-AKAP-450 domain of centrosomal targeting protein TPR_MLP1_2 PF07926.12 gi|154149874|ref|YP_001403492.1| - 0.13 12.4 18.3 0.37 10.9 18.3 1.8 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF745 PF05335.13 gi|154149874|ref|YP_001403492.1| - 0.13 12.0 16.0 0.31 10.7 16.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF745) TMF_TATA_bd PF12325.8 gi|154149874|ref|YP_001403492.1| - 0.15 12.3 18.8 0.29 11.4 18.8 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Atg14 PF10186.9 gi|154149874|ref|YP_001403492.1| - 0.16 11.0 6.5 0.26 10.3 6.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Rootletin PF15035.6 gi|154149874|ref|YP_001403492.1| - 0.2 11.7 15.4 0.07 13.2 10.8 2.1 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion OmpH PF03938.14 gi|154149874|ref|YP_001403492.1| - 0.22 11.9 13.4 0.59 10.5 13.4 1.7 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) APG6_N PF17675.1 gi|154149874|ref|YP_001403492.1| - 0.27 11.8 16.6 0.72 10.4 16.6 1.7 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF4527 PF15030.6 gi|154149874|ref|YP_001403492.1| - 0.29 10.5 6.3 0.76 9.1 6.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) FapA PF03961.13 gi|154149874|ref|YP_001403492.1| - 0.31 9.6 7.5 0.52 8.9 7.5 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A Sec20 PF03908.13 gi|154149874|ref|YP_001403492.1| - 0.32 11.0 6.6 0.71 9.8 6.6 1.6 1 0 0 1 1 1 0 Sec20 Laminin_II PF06009.12 gi|154149874|ref|YP_001403492.1| - 0.44 10.6 13.9 0.32 11.0 10.5 2.1 1 1 1 2 2 2 0 Laminin Domain II AAA_23 PF13476.6 gi|154149874|ref|YP_001403492.1| - 0.51 10.8 10.2 1.1 9.7 10.2 1.6 1 0 0 1 1 1 0 AAA domain AviRa PF11599.8 gi|154149874|ref|YP_001403492.1| - 0.51 9.8 2.1 3.1 7.2 0.0 2.3 2 0 0 2 2 2 0 RRNA methyltransferase AviRa HIP1_clath_bdg PF16515.5 gi|154149874|ref|YP_001403492.1| - 0.51 11.0 14.7 1.8 9.2 14.7 2.0 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 MCC-bdg_PDZ PF10506.9 gi|154149874|ref|YP_001403492.1| - 0.53 10.3 8.8 0.23 11.5 1.9 3.0 1 1 2 3 3 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Tropomyosin PF00261.20 gi|154149874|ref|YP_001403492.1| - 0.6 9.4 17.7 2.3 7.5 17.8 1.6 1 1 0 1 1 1 0 Tropomyosin DHR10 PF18595.1 gi|154149874|ref|YP_001403492.1| - 0.63 10.1 18.0 5.4 7.1 0.3 2.6 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain DUF4407 PF14362.6 gi|154149874|ref|YP_001403492.1| - 0.64 9.3 7.7 1.1 8.5 7.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Jnk-SapK_ap_N PF09744.9 gi|154149874|ref|YP_001403492.1| - 0.65 10.2 16.9 1.2 9.4 16.9 1.4 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF2203 PF09969.9 gi|154149874|ref|YP_001403492.1| - 0.86 10.3 7.1 3 8.6 7.1 1.9 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) TMPIT PF07851.13 gi|154149874|ref|YP_001403492.1| - 0.87 8.8 9.5 1.5 8.0 9.5 1.2 1 0 0 1 1 1 0 TMPIT-like protein ADIP PF11559.8 gi|154149874|ref|YP_001403492.1| - 0.9 9.6 14.4 1.8 8.6 14.4 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding COG5 PF10392.9 gi|154149874|ref|YP_001403492.1| - 0.98 9.6 8.3 2.2 8.5 8.3 1.5 1 0 0 1 1 1 0 Golgi transport complex subunit 5 Baculo_gp64 PF03273.13 gi|154149874|ref|YP_001403492.1| - 1.3 7.7 2.8 17 4.0 0.6 2.2 1 1 1 2 2 2 0 Baculovirus gp64 envelope glycoprotein family Seryl_tRNA_N PF02403.22 gi|154149874|ref|YP_001403492.1| - 1.4 9.2 16.5 6.4 7.1 16.1 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CENP-H PF05837.12 gi|154149874|ref|YP_001403492.1| - 1.4 9.3 14.0 3.3 8.1 14.0 1.6 1 0 0 1 1 1 0 Centromere protein H (CENP-H) KxDL PF10241.9 gi|154149874|ref|YP_001403492.1| - 1.5 9.2 13.0 1.3 9.4 2.9 3.2 1 1 2 3 3 3 0 Uncharacterized conserved protein LMBR1 PF04791.16 gi|154149874|ref|YP_001403492.1| - 1.6 7.6 7.0 2.3 7.0 7.0 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Ran-binding PF05508.11 gi|154149874|ref|YP_001403492.1| - 1.8 7.5 7.8 3 6.8 7.8 1.3 1 0 0 1 1 1 0 RanGTP-binding protein UPF0242 PF06785.11 gi|154149874|ref|YP_001403492.1| - 1.8 8.6 15.1 3.5 7.7 15.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus zf-C4H2 PF10146.9 gi|154149874|ref|YP_001403492.1| - 1.8 8.8 12.0 3.8 7.8 12.0 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein PilO PF04350.13 gi|154149874|ref|YP_001403492.1| - 2.5 8.2 8.5 0.68 10.1 4.7 1.9 1 1 1 2 2 2 0 Pilus assembly protein, PilO HemX PF04375.14 gi|154149874|ref|YP_001403492.1| - 3 7.0 13.0 5 6.3 13.0 1.3 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase COG2 PF06148.11 gi|154149874|ref|YP_001403492.1| - 3.4 7.7 15.3 2.5 8.2 12.3 2.3 2 1 0 2 2 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Snapin_Pallidin PF14712.6 gi|154149874|ref|YP_001403492.1| - 3.5 8.1 13.4 8.6 6.9 12.3 2.2 1 1 1 2 2 2 0 Snapin/Pallidin CC2-LZ PF16516.5 gi|154149874|ref|YP_001403492.1| - 4.2 7.8 15.8 12 6.3 3.0 3.0 1 1 1 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Sec8_exocyst PF04048.14 gi|154149874|ref|YP_001403492.1| - 4.5 7.2 10.0 12 5.7 10.0 1.7 1 1 0 1 1 1 0 Sec8 exocyst complex component specific domain Syntaxin-6_N PF09177.11 gi|154149874|ref|YP_001403492.1| - 5.1 7.7 12.3 22 5.7 11.2 2.7 2 1 0 2 2 1 0 Syntaxin 6, N-terminal Flagellin_N PF00669.20 gi|154149874|ref|YP_001403492.1| - 5.1 7.2 14.2 5.8 7.0 11.3 2.5 2 1 0 2 2 1 0 Bacterial flagellin N-terminal helical region Fmp27_WPPW PF10359.9 gi|154149874|ref|YP_001403492.1| - 5.5 5.7 12.4 1.4 7.7 9.0 1.6 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Prominin PF05478.11 gi|154149874|ref|YP_001403492.1| - 5.6 4.8 6.6 8.6 4.2 6.6 1.1 1 0 0 1 1 1 0 Prominin PAS_9 PF13426.7 gi|154149875|ref|YP_001403493.1| - 2.7e-07 30.8 0.1 2.4e-06 27.7 0.0 2.6 4 0 0 4 4 4 1 PAS domain PAS PF00989.25 gi|154149875|ref|YP_001403493.1| - 0.0013 18.7 0.2 1.1 9.3 0.0 2.8 2 1 1 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|154149875|ref|YP_001403493.1| - 0.004 17.6 0.0 0.0084 16.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|154149875|ref|YP_001403493.1| - 0.0088 15.6 0.1 0.015 14.8 0.1 1.3 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|154149875|ref|YP_001403493.1| - 0.023 14.7 1.3 0.043 13.9 0.1 2.0 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Elongin_A PF06881.11 gi|154149875|ref|YP_001403493.1| - 0.42 11.2 1.9 2.3 8.8 1.1 2.4 2 1 0 2 2 2 0 RNA polymerase II transcription factor SIII (Elongin) subunit A TusA PF01206.17 gi|154149876|ref|YP_001403494.1| - 4.9e-19 67.9 0.1 5.6e-19 67.7 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|154149876|ref|YP_001403494.1| - 5.4e-06 26.2 0.0 1e-05 25.3 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) PAS_9 PF13426.7 gi|154149877|ref|YP_001403495.1| - 9.8e-28 96.5 0.0 4.7e-13 49.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|154149877|ref|YP_001403495.1| - 1.7e-27 95.6 0.0 4.1e-14 52.5 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|154149877|ref|YP_001403495.1| - 3.5e-25 88.4 0.0 4.6e-14 52.6 0.0 2.9 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.24 gi|154149877|ref|YP_001403495.1| - 5.4e-21 74.8 0.0 2.2e-20 72.9 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.7 gi|154149877|ref|YP_001403495.1| - 5.2e-19 67.8 0.0 6.8e-09 35.5 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|154149877|ref|YP_001403495.1| - 2.2e-16 59.9 0.0 1.5e-13 50.8 0.0 2.8 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|154149877|ref|YP_001403495.1| - 2.6e-11 44.0 0.0 6e-11 42.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|154149877|ref|YP_001403495.1| - 6.5e-08 32.7 1.5 0.00011 22.3 0.1 3.9 3 2 0 3 3 3 2 PAS fold PAS_10 PF13596.6 gi|154149877|ref|YP_001403495.1| - 0.0021 18.6 0.0 0.062 13.9 0.0 2.6 2 1 0 2 2 2 1 PAS domain HisKA PF00512.25 gi|154149877|ref|YP_001403495.1| - 0.058 13.4 0.1 0.29 11.2 0.0 2.3 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|154149877|ref|YP_001403495.1| - 0.13 11.8 0.1 0.26 10.8 0.1 1.5 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|154149877|ref|YP_001403495.1| - 0.15 11.9 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 GHKL domain Response_reg PF00072.24 gi|154149878|ref|YP_001403496.1| - 1.6e-21 76.6 0.0 1.8e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|154149879|ref|YP_001403497.1| - 7.4e-24 83.9 0.3 1.4e-07 31.5 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|154149879|ref|YP_001403497.1| - 8.4e-23 79.9 0.0 1.4e-07 31.3 0.0 4.0 4 0 0 4 4 4 3 PAS domain PAS_9 PF13426.7 gi|154149879|ref|YP_001403497.1| - 1.1e-21 77.0 0.7 1.5e-05 25.2 0.1 3.5 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|154149879|ref|YP_001403497.1| - 2.2e-17 63.3 0.0 3e-05 24.2 0.0 3.8 3 1 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|154149879|ref|YP_001403497.1| - 1.1e-15 57.7 0.0 2.8e-06 27.5 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.7 gi|154149879|ref|YP_001403497.1| - 1.2e-05 25.4 0.1 0.01 16.0 0.0 3.7 5 0 0 5 5 4 1 PAS fold HTH_IclR PF09339.10 gi|154149879|ref|YP_001403497.1| - 0.007 16.2 0.0 0.019 14.7 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MEKHLA PF08670.11 gi|154149879|ref|YP_001403497.1| - 0.009 15.9 0.0 1.8 8.5 0.0 2.4 2 0 0 2 2 2 1 MEKHLA domain HTH_5 PF01022.20 gi|154149879|ref|YP_001403497.1| - 0.013 15.4 0.0 0.029 14.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TBPIP PF07106.13 gi|154149879|ref|YP_001403497.1| - 0.014 15.3 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_38 PF13936.6 gi|154149879|ref|YP_001403497.1| - 0.019 14.7 0.1 0.073 12.9 0.1 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|154149879|ref|YP_001403497.1| - 0.028 14.2 0.0 0.06 13.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain PAS_2 PF08446.11 gi|154149879|ref|YP_001403497.1| - 0.062 14.0 0.0 0.91 10.2 0.0 2.8 2 1 0 3 3 3 0 PAS fold RPA_C PF08784.11 gi|154149879|ref|YP_001403497.1| - 0.09 13.5 0.0 0.17 12.5 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_Tnp_ISL3 PF13542.6 gi|154149879|ref|YP_001403497.1| - 0.091 12.2 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_20 PF12840.7 gi|154149879|ref|YP_001403497.1| - 0.099 12.7 0.0 0.36 10.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain TM_helix PF05552.12 gi|154149880|ref|YP_001403498.1| - 3.1e-13 49.5 9.2 2.1e-09 37.2 2.3 3.8 4 0 0 4 4 4 2 Conserved TM helix FtsX PF02687.21 gi|154149880|ref|YP_001403498.1| - 2.5 8.6 25.2 0.45 11.0 5.4 3.4 2 2 1 3 3 3 0 FtsX-like permease family Mntp PF02659.15 gi|154149880|ref|YP_001403498.1| - 3.1 7.6 17.4 11 5.8 9.2 2.8 1 1 1 2 2 2 0 Putative manganese efflux pump PEGA PF08308.11 gi|154149881|ref|YP_001403499.1| - 1.6e-17 63.2 0.2 4.1e-17 61.8 0.2 1.7 1 0 0 1 1 1 1 PEGA domain DUF3149 PF11346.8 gi|154149881|ref|YP_001403499.1| - 0.16 11.7 0.5 0.33 10.6 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) TrbC PF04956.13 gi|154149881|ref|YP_001403499.1| - 0.32 11.2 7.7 2.2 8.5 0.6 2.4 2 1 0 2 2 2 0 TrbC/VIRB2 family TPR_14 PF13428.6 gi|154149882|ref|YP_001403500.1| - 0.021 15.6 0.2 6.5 7.9 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154149882|ref|YP_001403500.1| - 0.056 14.0 0.3 5.6 7.6 0.0 2.4 2 1 0 2 2 2 0 Tetratricopeptide repeat SBP_bac_1 PF01547.25 gi|154149882|ref|YP_001403500.1| - 1.2 9.0 6.1 0.57 10.1 0.8 2.0 1 1 0 2 2 2 0 Bacterial extracellular solute-binding protein Response_reg PF00072.24 gi|154149884|ref|YP_001403502.1| - 3.5e-22 78.7 0.0 7.5e-22 77.6 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|154149884|ref|YP_001403502.1| - 9.5e-22 77.8 0.0 1.9e-21 76.8 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|154149884|ref|YP_001403502.1| - 2.1e-12 47.6 0.0 4.8e-12 46.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|154149884|ref|YP_001403502.1| - 2.6e-10 40.5 0.0 7.7e-10 39.0 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|154149884|ref|YP_001403502.1| - 5.1e-09 36.1 0.0 1.1e-08 35.0 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|154149884|ref|YP_001403502.1| - 1.8e-08 34.6 0.0 8.2e-08 32.4 0.0 2.2 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|154149884|ref|YP_001403502.1| - 2.2e-06 27.5 0.1 6e-06 26.2 0.1 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|154149884|ref|YP_001403502.1| - 0.00011 22.4 0.3 0.00034 20.8 0.1 1.9 2 0 0 2 2 2 1 PAS fold PAS_12 PF18095.1 gi|154149884|ref|YP_001403502.1| - 0.0044 16.7 0.0 0.015 14.9 0.0 1.9 1 1 0 1 1 1 1 UPF0242 C-terminal PAS-like domain PAS_11 PF14598.6 gi|154149884|ref|YP_001403502.1| - 0.19 11.9 0.0 0.61 10.2 0.0 1.8 1 1 0 1 1 1 0 PAS domain Prominin PF05478.11 gi|154149884|ref|YP_001403502.1| - 0.28 9.1 0.1 0.57 8.1 0.1 1.4 1 0 0 1 1 1 0 Prominin PAS_9 PF13426.7 gi|154149885|ref|YP_001403503.1| - 8.3e-28 96.7 0.0 1.1e-09 38.4 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|154149885|ref|YP_001403503.1| - 3e-25 88.6 0.0 9.6e-09 35.5 0.0 3.8 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|154149885|ref|YP_001403503.1| - 2.1e-23 81.9 0.0 7.3e-10 38.6 0.0 3.7 3 0 0 3 3 3 3 PAS domain Response_reg PF00072.24 gi|154149885|ref|YP_001403503.1| - 2.2e-20 72.9 0.0 6.1e-20 71.5 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|154149885|ref|YP_001403503.1| - 2e-19 69.7 0.0 3.6e-06 26.9 0.0 3.5 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|154149885|ref|YP_001403503.1| - 9.7e-13 48.6 0.0 4.6e-12 46.4 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|154149885|ref|YP_001403503.1| - 9.7e-07 28.7 0.1 5.1e-06 26.4 0.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|154149885|ref|YP_001403503.1| - 0.021 14.7 0.0 0.056 13.4 0.0 1.6 1 0 0 1 1 1 0 GHKL domain PAS_3 PF08447.12 gi|154149885|ref|YP_001403503.1| - 0.062 13.6 0.0 28 5.1 0.0 3.5 3 0 0 3 3 3 0 PAS fold HATPase_c_2 PF13581.6 gi|154149885|ref|YP_001403503.1| - 0.089 12.8 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|154149885|ref|YP_001403503.1| - 0.14 11.9 0.0 0.32 10.8 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APG6_N PF17675.1 gi|154149885|ref|YP_001403503.1| - 0.23 12.0 5.8 0.15 12.6 3.1 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region HALZ PF02183.18 gi|154149885|ref|YP_001403503.1| - 0.27 11.5 1.5 11 6.4 0.2 2.5 2 0 0 2 2 2 0 Homeobox associated leucine zipper Pyrid_ox_like PF16242.5 gi|154149886|ref|YP_001403504.1| - 1e-09 38.1 0.0 1e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Putative_PNPOx PF01243.20 gi|154149886|ref|YP_001403504.1| - 4.2e-08 33.3 0.0 8.6e-08 32.3 0.0 1.5 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase C2 PF00168.30 gi|154149886|ref|YP_001403504.1| - 0.017 15.4 0.1 0.023 15.0 0.1 1.3 1 0 0 1 1 1 0 C2 domain HEAT_2 PF13646.6 gi|154149888|ref|YP_001403506.1| - 1.8e-18 66.7 1.1 2.3e-18 66.4 1.1 1.1 1 0 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.16 gi|154149888|ref|YP_001403506.1| - 8.9e-13 47.6 3.9 5.2e-06 26.6 0.1 3.4 3 1 1 4 4 4 2 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|154149888|ref|YP_001403506.1| - 5.3e-08 32.5 0.0 0.0076 16.4 0.0 2.4 2 0 0 2 2 2 2 HEAT repeat HEAT_EZ PF13513.6 gi|154149888|ref|YP_001403506.1| - 1e-07 32.3 1.2 0.0067 16.9 0.1 2.6 3 0 0 3 3 3 2 HEAT-like repeat Arm PF00514.23 gi|154149888|ref|YP_001403506.1| - 0.0085 16.1 0.0 0.84 9.8 0.0 2.3 1 1 1 2 2 2 1 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|154149888|ref|YP_001403506.1| - 0.03 14.4 0.0 0.54 10.3 0.0 2.3 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.7 gi|154149888|ref|YP_001403506.1| - 0.12 13.0 0.0 16 6.1 0.0 2.6 2 1 0 2 2 2 0 Vacuolar 14 Fab1-binding region TPR_4 PF07721.14 gi|154149888|ref|YP_001403506.1| - 1.3 9.8 0.1 1.3 9.8 0.1 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat Metallophos_2 PF12850.7 gi|154149889|ref|YP_001403507.1| - 5.6e-07 29.9 0.0 0.015 15.5 0.0 2.4 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|154149889|ref|YP_001403507.1| - 1.6e-06 28.8 0.7 2.3e-05 25.0 0.2 2.1 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Fer4_16 PF13484.6 gi|154149890|ref|YP_001403508.1| - 1.3e-06 29.2 10.3 0.00062 20.6 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|154149890|ref|YP_001403508.1| - 2.1e-05 24.2 22.8 0.00026 20.7 5.5 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154149890|ref|YP_001403508.1| - 3.3e-05 24.4 13.3 0.0097 16.5 15.6 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154149890|ref|YP_001403508.1| - 6.7e-05 23.0 15.5 0.00013 22.1 15.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Flavodoxin_5 PF12724.7 gi|154149890|ref|YP_001403508.1| - 0.00025 21.3 0.0 0.00037 20.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Fer4_8 PF13183.6 gi|154149890|ref|YP_001403508.1| - 0.00026 21.3 5.4 0.0036 17.7 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Flavodoxin_1 PF00258.25 gi|154149890|ref|YP_001403508.1| - 0.0012 19.1 0.0 0.0018 18.5 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Fer4_21 PF14697.6 gi|154149890|ref|YP_001403508.1| - 0.0029 17.7 17.8 0.01 15.9 3.6 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154149890|ref|YP_001403508.1| - 0.013 15.5 5.1 0.013 15.5 5.1 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|154149890|ref|YP_001403508.1| - 0.025 14.7 17.9 0.025 14.7 17.9 1.9 2 1 0 2 2 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|154149890|ref|YP_001403508.1| - 0.033 14.4 7.7 0.079 13.2 7.7 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|154149890|ref|YP_001403508.1| - 1.4 10.0 26.4 0.15 13.1 6.4 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|154149890|ref|YP_001403508.1| - 4.4 7.9 15.6 0.15 12.6 2.6 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154149890|ref|YP_001403508.1| - 7.3 6.9 21.9 0.097 12.8 7.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain DUF1700 PF08006.11 gi|154149891|ref|YP_001403509.1| - 1.2e-30 106.4 0.0 1.7e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1700) DUF2154 PF09922.9 gi|154149891|ref|YP_001403509.1| - 5.7e-06 26.2 0.1 3.4e-05 23.7 0.1 2.2 2 1 1 3 3 3 1 Cell wall-active antibiotics response 4TMS YvqF Toast_rack_N PF17115.5 gi|154149891|ref|YP_001403509.1| - 0.0035 17.6 0.1 0.037 14.3 0.0 2.6 2 1 0 2 2 2 1 N-terminal domain of toast_rack, DUF2154 DUF2207 PF09972.9 gi|154149891|ref|YP_001403509.1| - 0.2 10.4 1.1 0.32 9.7 1.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) HXXEE PF13787.6 gi|154149891|ref|YP_001403509.1| - 0.72 10.7 6.8 1.3 9.9 6.8 1.4 1 0 0 1 1 1 0 Protein of unknown function with HXXEE motif PadR PF03551.14 gi|154149892|ref|YP_001403510.1| - 7.5e-24 83.5 0.2 1.1e-23 83.0 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|154149892|ref|YP_001403510.1| - 2.5e-05 24.1 0.0 3.5e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|154149892|ref|YP_001403510.1| - 0.0021 18.2 0.0 0.0026 17.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|154149892|ref|YP_001403510.1| - 0.0043 16.9 0.0 0.0053 16.6 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PaaX PF07848.12 gi|154149892|ref|YP_001403510.1| - 0.0055 16.9 0.0 0.0086 16.3 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein Rrf2 PF02082.20 gi|154149892|ref|YP_001403510.1| - 0.006 16.9 0.0 0.008 16.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator Penicillinase_R PF03965.16 gi|154149892|ref|YP_001403510.1| - 0.015 15.7 0.0 0.018 15.4 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.20 gi|154149892|ref|YP_001403510.1| - 0.02 14.8 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|154149892|ref|YP_001403510.1| - 0.029 14.2 0.0 0.051 13.4 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_IclR PF09339.10 gi|154149892|ref|YP_001403510.1| - 0.056 13.2 0.0 0.096 12.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|154149892|ref|YP_001403510.1| - 0.076 13.5 0.0 0.16 12.4 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_41 PF14502.6 gi|154149892|ref|YP_001403510.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain NTP_transf_2 PF01909.23 gi|154149893|ref|YP_001403511.1| - 5e-15 55.6 0.1 5.6e-15 55.4 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|154149893|ref|YP_001403511.1| - 6.8e-13 48.5 0.0 7.6e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|154149893|ref|YP_001403511.1| - 0.018 15.2 0.0 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm PIN PF01850.21 gi|154149894|ref|YP_001403512.1| - 6.4e-05 23.4 0.3 9.1e-05 22.9 0.3 1.2 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|154149894|ref|YP_001403512.1| - 0.027 14.2 1.4 3.7 7.4 0.0 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF5615) Exo_endo_phos PF03372.23 gi|154149895|ref|YP_001403513.1| - 4.6e-16 59.0 0.0 5.5e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|154149895|ref|YP_001403513.1| - 0.0011 18.8 0.1 0.0036 17.1 0.1 1.9 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase DUF2075 PF09848.9 gi|154149896|ref|YP_001403514.1| - 7.7e-79 265.5 0.0 1e-78 265.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NERD PF08378.11 gi|154149896|ref|YP_001403514.1| - 0.0011 19.4 0.0 0.0056 17.1 0.0 2.2 1 1 1 2 2 2 1 Nuclease-related domain AAA_30 PF13604.6 gi|154149896|ref|YP_001403514.1| - 0.0014 18.4 0.0 0.0028 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|154149896|ref|YP_001403514.1| - 0.015 15.7 0.0 0.044 14.2 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 gi|154149896|ref|YP_001403514.1| - 0.016 14.6 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 KaiC Zot PF05707.12 gi|154149896|ref|YP_001403514.1| - 0.088 12.4 0.0 0.29 10.7 0.0 1.8 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) DUF1232 PF06803.12 gi|154149897|ref|YP_001403515.1| - 3e-08 33.3 0.4 3e-08 33.3 0.4 2.3 3 0 0 3 3 3 1 Protein of unknown function (DUF1232) TFIIE_beta PF02186.15 gi|154149897|ref|YP_001403515.1| - 0.02 15.2 1.7 0.48 10.7 0.2 2.5 2 0 0 2 2 2 0 TFIIE beta subunit core domain HEPN_Swt1 PF18731.1 gi|154149898|ref|YP_001403516.1| - 0.00057 20.2 0.8 0.0015 18.9 0.8 1.7 1 0 0 1 1 1 1 Swt1-like HEPN HEPN_SAV2148 PF18725.1 gi|154149898|ref|YP_001403516.1| - 0.0068 15.8 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 SAV2148-like HEPN MUG113 PF13455.6 gi|154149898|ref|YP_001403516.1| - 0.038 14.7 0.5 0.12 13.1 0.1 2.0 2 0 0 2 2 2 0 Meiotically up-regulated gene 113 COQ7 PF03232.13 gi|154149899|ref|YP_001403517.1| - 0.31 10.8 1.8 0.42 10.4 0.2 2.0 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Sec34 PF04136.15 gi|154149899|ref|YP_001403517.1| - 0.55 10.1 11.8 0.1 12.5 4.4 2.8 2 1 0 2 2 2 0 Sec34-like family Atg14 PF10186.9 gi|154149899|ref|YP_001403517.1| - 0.78 8.8 8.5 12 4.9 7.1 2.5 2 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 UPF0242 PF06785.11 gi|154149899|ref|YP_001403517.1| - 3.5 7.7 21.2 2 8.5 5.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus APG6_N PF17675.1 gi|154149899|ref|YP_001403517.1| - 4.6 7.8 25.9 0.69 10.4 9.3 2.5 2 0 0 2 2 2 0 Apg6 coiled-coil region CEP63 PF17045.5 gi|154149899|ref|YP_001403517.1| - 5.7 6.8 17.1 0.66 9.8 4.3 2.6 3 0 0 3 3 3 0 Centrosomal protein of 63 kDa CENP-F_leu_zip PF10473.9 gi|154149899|ref|YP_001403517.1| - 5.9 6.9 21.3 2.8 8.0 6.3 2.7 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fib_alpha PF08702.10 gi|154149899|ref|YP_001403517.1| - 7.4 6.7 15.0 3.4 7.8 1.0 3.2 3 1 0 3 3 3 0 Fibrinogen alpha/beta chain family ResIII PF04851.15 gi|154149900|ref|YP_001403518.1| - 4.3e-15 56.1 0.1 1.7e-14 54.2 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|154149900|ref|YP_001403518.1| - 7.9e-14 52.0 0.2 1.3e-10 41.6 0.0 2.7 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 gi|154149900|ref|YP_001403518.1| - 2.7e-08 33.8 0.0 5.7e-07 29.5 0.0 2.7 2 1 0 2 2 2 1 DEAD/DEAH box helicase RE_NgoFVII PF09565.10 gi|154149900|ref|YP_001403518.1| - 4.8e-05 22.8 0.1 8.6e-05 22.0 0.1 1.4 1 0 0 1 1 1 1 NgoFVII restriction endonuclease SWI2_SNF2 PF18766.1 gi|154149900|ref|YP_001403518.1| - 8.7e-05 22.3 0.0 0.00018 21.2 0.0 1.5 1 0 0 1 1 1 1 SWI2/SNF2 ATPase PLDc_2 PF13091.6 gi|154149900|ref|YP_001403518.1| - 0.00016 21.5 0.2 0.00041 20.2 0.2 1.6 1 0 0 1 1 1 1 PLD-like domain Helicase_C_2 PF13307.6 gi|154149900|ref|YP_001403518.1| - 0.0037 17.5 0.2 0.087 13.0 0.0 2.9 4 0 0 4 4 4 1 Helicase C-terminal domain RWD PF05773.22 gi|154149900|ref|YP_001403518.1| - 0.013 15.8 0.0 0.67 10.3 0.1 2.5 2 1 0 2 2 2 0 RWD domain Flavi_DEAD PF07652.14 gi|154149900|ref|YP_001403518.1| - 0.016 15.2 0.0 0.18 11.8 0.0 2.2 2 0 0 2 2 2 0 Flavivirus DEAD domain Aminotran_5 PF00266.19 gi|154149901|ref|YP_001403519.1| - 1.8e-88 297.0 0.3 2.1e-88 296.8 0.3 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|154149901|ref|YP_001403519.1| - 2.8e-11 43.3 0.3 3.9e-11 42.8 0.3 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|154149901|ref|YP_001403519.1| - 3.9e-11 42.9 1.2 6.1e-11 42.2 1.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|154149901|ref|YP_001403519.1| - 3.6e-07 29.7 0.1 6.6e-07 28.8 0.1 1.4 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|154149901|ref|YP_001403519.1| - 1.3e-05 24.0 0.1 1.7e-05 23.5 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DndE PF08870.11 gi|154149902|ref|YP_001403520.1| - 5.2e-30 104.0 0.0 6.6e-30 103.7 0.0 1.1 1 0 0 1 1 1 1 DNA sulphur modification protein DndE AAA_23 PF13476.6 gi|154149903|ref|YP_001403521.1| - 5e-21 76.1 2.7 5e-21 76.1 2.7 3.4 1 1 1 2 2 1 1 AAA domain SMC_N PF02463.19 gi|154149903|ref|YP_001403521.1| - 1.6e-07 31.0 6.4 0.0067 15.9 0.0 2.8 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|154149903|ref|YP_001403521.1| - 5.6e-05 23.1 1.1 0.0062 16.4 0.2 2.5 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|154149903|ref|YP_001403521.1| - 0.0022 17.7 0.0 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MscS_porin PF12795.7 gi|154149903|ref|YP_001403521.1| - 0.0036 16.9 19.7 0.016 14.7 10.6 2.4 2 0 0 2 2 2 2 Mechanosensitive ion channel porin domain NPV_P10 PF05531.12 gi|154149903|ref|YP_001403521.1| - 0.0082 16.6 7.6 1.3 9.6 2.8 3.9 2 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Zeta_toxin PF06414.12 gi|154149903|ref|YP_001403521.1| - 0.016 14.5 0.1 0.079 12.2 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin NACHT PF05729.12 gi|154149903|ref|YP_001403521.1| - 0.02 14.8 0.6 0.15 12.0 0.1 2.6 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.6 gi|154149903|ref|YP_001403521.1| - 0.048 14.0 0.3 0.66 10.3 0.0 2.8 2 1 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 gi|154149903|ref|YP_001403521.1| - 0.058 13.0 4.2 0.071 12.7 0.0 3.0 3 2 0 3 3 3 0 AAA domain DUF948 PF06103.11 gi|154149903|ref|YP_001403521.1| - 0.082 13.2 2.4 1.2 9.4 0.4 2.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) cobW PF02492.19 gi|154149903|ref|YP_001403521.1| - 0.093 12.3 1.4 0.37 10.4 0.1 2.6 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain LPP PF04728.13 gi|154149903|ref|YP_001403521.1| - 0.18 12.2 7.2 5.8 7.4 0.2 3.9 3 1 0 3 3 3 0 Lipoprotein leucine-zipper Seryl_tRNA_N PF02403.22 gi|154149903|ref|YP_001403521.1| - 0.29 11.4 21.7 0.085 13.1 3.7 3.8 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF4140 PF13600.6 gi|154149903|ref|YP_001403521.1| - 2.6 8.5 12.9 9.9 6.7 0.3 3.7 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) ABC_tran PF00005.27 gi|154149903|ref|YP_001403521.1| - 3 8.3 14.5 0.37 11.3 3.5 3.6 2 2 1 3 3 3 0 ABC transporter DUF3450 PF11932.8 gi|154149903|ref|YP_001403521.1| - 3.3 6.9 21.0 0.24 10.7 1.7 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) DUF1664 PF07889.12 gi|154149903|ref|YP_001403521.1| - 3.7 7.6 14.5 2.8 8.0 0.6 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) ATG16 PF08614.11 gi|154149903|ref|YP_001403521.1| - 4 7.6 22.3 37 4.4 2.9 3.2 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) Fib_alpha PF08702.10 gi|154149903|ref|YP_001403521.1| - 4.9 7.3 19.8 1.5 9.0 0.8 3.7 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family THOC7 PF05615.13 gi|154149903|ref|YP_001403521.1| - 8.5 6.7 24.2 0.99 9.7 3.8 3.6 2 1 0 3 3 3 0 Tho complex subunit 7 PAPS_reduct PF01507.19 gi|154149904|ref|YP_001403522.1| - 2.2e-09 37.6 0.0 7.8e-09 35.8 0.0 2.0 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family DndB PF14072.6 gi|154149905|ref|YP_001403523.1| - 3.7e-121 404.6 0.2 4.2e-121 404.4 0.2 1.0 1 0 0 1 1 1 1 DNA-sulfur modification-associated DUF4570 PF15134.6 gi|154149905|ref|YP_001403523.1| - 0.041 13.9 1.5 0.055 13.5 0.0 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4570) Prenyltrans PF00432.21 gi|154149907|ref|YP_001403525.1| - 0.0013 18.5 2.0 23 4.9 0.0 4.7 5 0 0 5 5 5 3 Prenyltransferase and squalene oxidase repeat ETRAMP PF09716.10 gi|154149908|ref|YP_001403526.1| - 0.022 14.8 0.1 0.041 13.9 0.1 1.4 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) IPTL-CTERM PF18203.1 gi|154149908|ref|YP_001403526.1| - 0.56 10.2 4.7 1 9.3 4.7 1.4 1 0 0 1 1 1 0 IPTL-CTERM motif PIN PF01850.21 gi|154149909|ref|YP_001403527.1| - 9.7e-07 29.3 0.0 1.1e-06 29.1 0.0 1.1 1 0 0 1 1 1 1 PIN domain NTP_transf_2 PF01909.23 gi|154149910|ref|YP_001403528.1| - 7.2e-10 39.0 0.1 1.2e-09 38.3 0.1 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|154149910|ref|YP_001403528.1| - 2.5e-08 33.9 0.0 3.2e-08 33.5 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Kelch_4 PF13418.6 gi|154149910|ref|YP_001403528.1| - 0.033 14.2 0.0 0.057 13.4 0.0 1.3 1 0 0 1 1 1 0 Galactose oxidase, central domain Lipin_N PF04571.14 gi|154149910|ref|YP_001403528.1| - 0.04 13.9 0.1 0.075 13.0 0.0 1.5 2 0 0 2 2 2 0 lipin, N-terminal conserved region HEPN PF05168.14 gi|154149911|ref|YP_001403529.1| - 6.4e-25 87.6 0.1 7.2e-25 87.4 0.1 1.0 1 0 0 1 1 1 1 HEPN domain CdvA PF18822.1 gi|154149911|ref|YP_001403529.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 CdvA-like coiled-coil domain TspO_MBR PF03073.15 gi|154149912|ref|YP_001403530.1| - 0.015 15.4 11.2 0.26 11.4 8.7 2.3 2 1 0 2 2 2 0 TspO/MBR family DUF2070 PF09843.9 gi|154149912|ref|YP_001403530.1| - 0.84 7.8 7.1 0.92 7.7 7.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF5305 PF17231.2 gi|154149912|ref|YP_001403530.1| - 1.4 8.2 4.3 6.1 6.2 0.1 2.3 2 1 0 2 2 2 0 Family of unknown function (DUF5305) Phage_holin_3_6 PF07332.11 gi|154149912|ref|YP_001403530.1| - 5.9 7.0 16.6 5.9 7.0 7.7 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III LptF_LptG PF03739.14 gi|154149912|ref|YP_001403530.1| - 7.9 5.2 15.3 0.38 9.5 8.6 1.8 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG EST1 PF10374.9 gi|154149913|ref|YP_001403531.1| - 0.11 13.1 0.4 0.17 12.5 0.4 1.3 1 0 0 1 1 1 0 Telomerase activating protein Est1 NTP_transf_2 PF01909.23 gi|154149914|ref|YP_001403532.1| - 3.5e-11 43.3 0.0 4e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|154149914|ref|YP_001403532.1| - 1.6e-09 37.7 0.0 1.9e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MdcG PF10620.9 gi|154149914|ref|YP_001403532.1| - 0.016 15.0 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Hepar_II_III_N PF16889.5 gi|154149914|ref|YP_001403532.1| - 0.13 11.5 0.0 0.24 10.6 0.0 1.5 1 1 0 1 1 1 0 Heparinase II/III N-terminus DUF86 PF01934.17 gi|154149915|ref|YP_001403533.1| - 1.1e-23 83.4 0.0 1.2e-23 83.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 HTH_3 PF01381.22 gi|154149916|ref|YP_001403534.1| - 2.3e-15 56.4 0.2 2.9e-15 56.1 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|154149916|ref|YP_001403534.1| - 1.2e-13 50.9 0.2 1.4e-13 50.6 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|154149916|ref|YP_001403534.1| - 4.5e-11 43.0 0.0 6e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 gi|154149916|ref|YP_001403534.1| - 9.2e-10 38.7 0.0 1.2e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|154149916|ref|YP_001403534.1| - 0.00066 19.5 0.4 0.0016 18.3 0.4 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|154149916|ref|YP_001403534.1| - 0.019 14.9 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|154149916|ref|YP_001403534.1| - 0.062 13.2 0.0 0.096 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF86 PF01934.17 gi|154149918|ref|YP_001403536.1| - 4.7e-25 87.7 0.1 5.5e-25 87.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF4606 PF15379.6 gi|154149918|ref|YP_001403536.1| - 0.059 13.6 0.1 0.11 12.8 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4606) NTP_transf_2 PF01909.23 gi|154149919|ref|YP_001403537.1| - 8.2e-14 51.7 0.1 9.6e-14 51.5 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|154149919|ref|YP_001403537.1| - 5.3e-11 42.5 0.0 6.4e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|154149919|ref|YP_001403537.1| - 0.11 12.7 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm HTH_24 PF13412.6 gi|154149920|ref|YP_001403538.1| - 1.4e-14 53.4 0.1 1.4e-09 37.4 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|154149920|ref|YP_001403538.1| - 6.8e-08 32.4 0.0 0.0071 16.4 0.0 2.5 3 0 0 3 3 3 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|154149920|ref|YP_001403538.1| - 8.6e-05 22.3 0.1 0.0097 15.8 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|154149920|ref|YP_001403538.1| - 0.00044 20.1 0.0 0.012 15.5 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|154149920|ref|YP_001403538.1| - 0.0032 17.3 0.0 2.1 8.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|154149920|ref|YP_001403538.1| - 0.029 14.2 0.4 0.2 11.5 0.0 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_34 PF13601.6 gi|154149920|ref|YP_001403538.1| - 0.032 14.4 0.0 1.7 8.9 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|154149920|ref|YP_001403538.1| - 0.12 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2551 PF10826.8 gi|154149920|ref|YP_001403538.1| - 0.16 12.2 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2551) PPC PF04151.15 gi|154149921|ref|YP_001403539.1| - 2.6e-06 28.4 0.5 4.3e-06 27.7 0.5 1.4 1 0 0 1 1 1 1 Bacterial pre-peptidase C-terminal domain Peptidase_C39_2 PF13529.6 gi|154149922|ref|YP_001403540.1| - 8.2e-19 68.6 3.9 1.6e-18 67.6 3.9 1.5 1 0 0 1 1 1 1 Peptidase_C39 like family Peptidase_C70 PF12385.8 gi|154149922|ref|YP_001403540.1| - 2.9e-07 30.6 0.1 5e-07 29.8 0.1 1.3 1 0 0 1 1 1 1 Papain-like cysteine protease AvrRpt2 IPTL-CTERM PF18203.1 gi|154149922|ref|YP_001403540.1| - 0.08 12.9 2.4 0.15 12.0 2.4 1.4 1 0 0 1 1 1 0 IPTL-CTERM motif FliP PF00813.20 gi|154149922|ref|YP_001403540.1| - 0.094 12.6 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 FliP family PQQ_2 PF13360.6 gi|154149923|ref|YP_001403541.1| - 2.4e-15 56.7 0.8 6.5e-08 32.5 0.0 3.0 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|154149923|ref|YP_001403541.1| - 8.1e-10 38.2 7.1 0.15 12.1 0.0 6.8 6 1 1 7 7 7 3 PQQ enzyme repeat Arylsulfotrans PF05935.11 gi|154149923|ref|YP_001403541.1| - 3.5e-08 32.8 0.0 0.0042 16.0 0.0 3.8 1 1 2 4 4 4 3 Arylsulfotransferase (ASST) PQQ_3 PF13570.6 gi|154149923|ref|YP_001403541.1| - 7.9e-05 23.0 12.5 0.51 10.9 0.0 6.2 6 1 1 7 7 7 2 PQQ-like domain RHS PF03527.14 gi|154149923|ref|YP_001403541.1| - 0.04 13.7 1.6 7.8 6.3 0.0 4.1 4 0 0 4 4 4 0 RHS protein VCBS PF13517.6 gi|154149923|ref|YP_001403541.1| - 3.2 8.4 7.0 21 5.8 0.2 4.0 2 1 1 3 3 3 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella MerR_1 PF13411.6 gi|154149929|ref|YP_001403547.1| - 0.14 12.3 0.1 0.34 11.0 0.1 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein AgrB PF04647.15 gi|154149930|ref|YP_001403548.1| - 0.81 9.0 5.5 0.26 10.6 1.6 2.0 1 1 0 2 2 2 0 Accessory gene regulator B HxlR PF01638.17 gi|154149931|ref|YP_001403549.1| - 5.7e-33 112.6 0.1 9.6e-33 111.9 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|154149931|ref|YP_001403549.1| - 0.014 15.4 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_12 PF08461.10 gi|154149931|ref|YP_001403549.1| - 0.069 13.1 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Rrf2 PF02082.20 gi|154149931|ref|YP_001403549.1| - 0.085 13.2 0.0 0.64 10.4 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator Lactamase_B PF00753.27 gi|154149932|ref|YP_001403550.1| - 2.2e-27 96.3 0.4 2.6e-27 96.1 0.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|154149932|ref|YP_001403550.1| - 1.4e-05 24.7 0.1 2.2e-05 24.1 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|154149932|ref|YP_001403550.1| - 0.00053 19.5 0.0 0.011 15.3 0.0 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF4919 PF16266.5 gi|154149932|ref|YP_001403550.1| - 0.2 11.6 0.0 0.49 10.3 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4919) MFS_1 PF07690.16 gi|154149933|ref|YP_001403551.1| - 4.7e-39 134.3 51.5 4.7e-39 134.3 51.5 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily DUF5084 PF16894.5 gi|154149933|ref|YP_001403551.1| - 0.032 14.7 0.5 0.032 14.7 0.5 3.3 3 1 1 4 4 4 0 Domain of unknown function (DUF5084) DUF742 PF05331.11 gi|154149933|ref|YP_001403551.1| - 1.1 9.1 3.2 0.61 9.9 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF742) MarR PF01047.22 gi|154149934|ref|YP_001403552.1| - 5e-14 52.0 0.0 1.5e-13 50.4 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|154149934|ref|YP_001403552.1| - 5e-10 39.1 0.0 8.1e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|154149934|ref|YP_001403552.1| - 1.1e-07 31.3 0.0 1.6e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|154149934|ref|YP_001403552.1| - 1.6e-06 28.5 0.0 2.6e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|154149934|ref|YP_001403552.1| - 4.7e-05 23.5 0.0 0.0001 22.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|154149934|ref|YP_001403552.1| - 9.9e-05 22.2 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|154149934|ref|YP_001403552.1| - 0.00015 21.5 0.0 0.00036 20.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|154149934|ref|YP_001403552.1| - 0.00049 19.7 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|154149934|ref|YP_001403552.1| - 0.0041 17.0 0.0 0.012 15.6 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_10 PF04967.12 gi|154149934|ref|YP_001403552.1| - 0.0082 15.9 0.5 0.071 12.9 0.1 2.2 2 0 0 2 2 2 1 HTH DNA binding domain PI-PLC-C1 PF16670.5 gi|154149934|ref|YP_001403552.1| - 0.0098 15.0 0.0 0.013 14.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoinositide phospholipase C, Ca2+-dependent PaaX PF07848.12 gi|154149934|ref|YP_001403552.1| - 0.011 15.9 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_Crp_2 PF13545.6 gi|154149934|ref|YP_001403552.1| - 0.012 15.6 0.0 0.023 14.7 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|154149934|ref|YP_001403552.1| - 0.013 15.4 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|154149934|ref|YP_001403552.1| - 0.015 15.4 0.0 0.03 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain EAP30 PF04157.16 gi|154149934|ref|YP_001403552.1| - 0.017 14.4 0.0 0.064 12.5 0.0 1.8 2 1 0 3 3 3 0 EAP30/Vps36 family Rrf2 PF02082.20 gi|154149934|ref|YP_001403552.1| - 0.026 14.9 0.0 0.068 13.5 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator HTH_34 PF13601.6 gi|154149934|ref|YP_001403552.1| - 0.031 14.5 0.0 0.06 13.5 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain FERM_F2 PF18377.1 gi|154149934|ref|YP_001403552.1| - 0.078 12.9 1.7 3.1 7.7 0.0 2.6 2 1 1 3 3 3 0 FERM F2 acyl-CoA binding protein-like domain ANT PF03374.14 gi|154149934|ref|YP_001403552.1| - 0.09 13.1 0.0 0.17 12.2 0.0 1.5 1 1 0 1 1 1 0 Phage antirepressor protein KilAC domain RPA_C PF08784.11 gi|154149934|ref|YP_001403552.1| - 0.1 13.3 0.0 0.2 12.4 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal DUF1091 PF06477.13 gi|154149934|ref|YP_001403552.1| - 0.2 12.2 0.7 0.46 11.0 0.1 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1091) Nitroreductase PF00881.24 gi|154149935|ref|YP_001403553.1| - 5.8e-21 75.3 0.0 7.8e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.27 gi|154149935|ref|YP_001403553.1| - 2.5e-09 36.5 12.3 1.4e-05 24.7 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154149935|ref|YP_001403553.1| - 3.6e-09 36.3 10.3 4e-05 23.5 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154149935|ref|YP_001403553.1| - 5e-07 30.6 5.7 0.0042 18.0 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|154149935|ref|YP_001403553.1| - 1.4e-06 28.4 7.8 2.8e-06 27.4 7.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154149935|ref|YP_001403553.1| - 1.8e-06 27.7 12.4 0.00041 20.3 3.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154149935|ref|YP_001403553.1| - 1.9e-06 28.4 9.1 4.4e-06 27.2 9.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain TM1586_NiRdase PF14512.6 gi|154149935|ref|YP_001403553.1| - 1.2e-05 25.0 0.0 0.025 14.1 0.0 2.4 2 1 0 2 2 2 2 Putative TM nitroreductase Fer4_10 PF13237.6 gi|154149935|ref|YP_001403553.1| - 0.00011 22.3 10.9 0.0067 16.5 12.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154149935|ref|YP_001403553.1| - 0.00041 20.4 9.6 0.0012 19.0 9.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154149935|ref|YP_001403553.1| - 0.0007 20.1 7.9 0.076 13.6 9.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|154149935|ref|YP_001403553.1| - 0.0078 17.0 7.3 0.26 12.2 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|154149935|ref|YP_001403553.1| - 0.018 15.7 1.3 0.018 15.7 1.3 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|154149935|ref|YP_001403553.1| - 0.046 14.2 14.0 0.52 10.8 2.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|154149935|ref|YP_001403553.1| - 0.26 12.3 16.6 0.69 11.0 5.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|154149935|ref|YP_001403553.1| - 0.84 10.3 14.7 0.55 10.9 3.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|154149935|ref|YP_001403553.1| - 1.1 9.4 9.9 2.8 8.1 0.6 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154149935|ref|YP_001403553.1| - 1.5 9.4 12.8 1.9 9.1 3.8 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Methyltransf_31 PF13847.6 gi|154149936|ref|YP_001403554.1| - 1.4e-25 89.9 0.0 1.8e-25 89.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154149936|ref|YP_001403554.1| - 2.3e-20 73.1 0.0 4.3e-20 72.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154149936|ref|YP_001403554.1| - 2.5e-17 63.3 0.0 4.4e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154149936|ref|YP_001403554.1| - 2.5e-14 53.8 0.0 4.1e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|154149936|ref|YP_001403554.1| - 1.4e-12 47.4 0.0 2e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|154149936|ref|YP_001403554.1| - 1.6e-12 47.5 0.0 2.2e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|154149936|ref|YP_001403554.1| - 6.2e-11 42.5 0.0 9.2e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|154149936|ref|YP_001403554.1| - 1.7e-08 34.5 0.0 2.5e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit NodS PF05401.11 gi|154149936|ref|YP_001403554.1| - 1.2e-06 28.3 0.0 1.8e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.14 gi|154149936|ref|YP_001403554.1| - 2.9e-05 23.7 0.0 4.8e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|154149936|ref|YP_001403554.1| - 4.5e-05 22.9 0.0 6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|154149936|ref|YP_001403554.1| - 6.4e-05 23.1 0.0 0.0001 22.4 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|154149936|ref|YP_001403554.1| - 0.00016 21.2 0.0 0.00028 20.4 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase CheR PF01739.18 gi|154149936|ref|YP_001403554.1| - 0.00035 20.1 0.0 0.017 14.6 0.0 2.2 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain PrmA PF06325.13 gi|154149936|ref|YP_001403554.1| - 0.00082 18.9 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|154149936|ref|YP_001403554.1| - 0.0011 18.4 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltr_RsmB-F PF01189.17 gi|154149936|ref|YP_001403554.1| - 0.0034 17.1 0.0 0.0057 16.3 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_9 PF08003.11 gi|154149936|ref|YP_001403554.1| - 0.0047 15.9 0.0 0.0076 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) GidB PF02527.15 gi|154149936|ref|YP_001403554.1| - 0.0068 15.8 0.0 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MetW PF07021.12 gi|154149936|ref|YP_001403554.1| - 0.0082 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|154149936|ref|YP_001403554.1| - 0.0089 16.0 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|154149936|ref|YP_001403554.1| - 0.066 12.3 0.0 0.096 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|154149936|ref|YP_001403554.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.17 gi|154149936|ref|YP_001403554.1| - 0.16 11.1 0.0 1.1 8.3 0.0 1.9 2 0 0 2 2 2 0 Fibrillarin Methyltransf_5 PF01795.19 gi|154149936|ref|YP_001403554.1| - 0.16 11.4 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 MraW methylase family Nha1_C PF08619.10 gi|154149938|ref|YP_001403556.1| - 0.045 13.0 0.3 0.059 12.6 0.3 1.1 1 0 0 1 1 1 0 Alkali metal cation/H+ antiporter Nha1 C terminus Acyl_transf_3 PF01757.22 gi|154149939|ref|YP_001403557.1| - 1.8e-28 99.6 46.5 5.3e-28 98.1 46.5 1.6 1 1 0 1 1 1 1 Acyltransferase family DUF3810 PF12725.7 gi|154149940|ref|YP_001403558.1| - 1 8.7 6.7 0.58 9.5 4.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3810) MarR PF01047.22 gi|154149941|ref|YP_001403559.1| - 3e-13 49.5 0.0 5.1e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|154149941|ref|YP_001403559.1| - 6.2e-09 35.6 0.0 1.1e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|154149941|ref|YP_001403559.1| - 7.8e-09 35.9 0.0 1.3e-08 35.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|154149941|ref|YP_001403559.1| - 4.1e-07 29.5 0.4 1.2e-06 28.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|154149941|ref|YP_001403559.1| - 1.1e-05 25.5 0.1 2.2e-05 24.5 0.0 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|154149941|ref|YP_001403559.1| - 0.037 14.0 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|154149941|ref|YP_001403559.1| - 0.077 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|154149941|ref|YP_001403559.1| - 0.094 12.6 0.0 0.19 11.6 0.0 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|154149941|ref|YP_001403559.1| - 0.098 12.6 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ParE_toxin PF05016.15 gi|154149943|ref|YP_001403561.1| - 0.028 15.0 0.0 0.042 14.5 0.0 1.3 1 0 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE STALD PF18185.1 gi|154149944|ref|YP_001403562.1| - 0.07 12.5 0.0 0.08 12.3 0.0 1.1 1 0 0 1 1 1 0 Sir2- and TIR-associating SLOG family HicB_lk_antitox PF15919.5 gi|154149945|ref|YP_001403563.1| - 3e-14 53.2 0.0 3.1e-14 53.1 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF4381 PF14316.6 gi|154149946|ref|YP_001403564.1| - 0.13 12.5 4.8 0.23 11.7 4.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) PAS_9 PF13426.7 gi|154149947|ref|YP_001403565.1| - 2.3e-24 85.6 0.0 5.5e-07 29.8 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|154149947|ref|YP_001403565.1| - 1.5e-21 76.7 0.0 4.3e-07 30.2 0.0 4.6 3 1 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|154149947|ref|YP_001403565.1| - 1.6e-19 70.1 0.0 4.1e-19 68.8 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|154149947|ref|YP_001403565.1| - 5.4e-12 45.7 0.0 6.2e-07 29.4 0.0 3.8 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|154149947|ref|YP_001403565.1| - 2.3e-11 44.2 0.0 8.4e-11 42.4 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|154149947|ref|YP_001403565.1| - 3.6e-11 42.8 0.0 2.5e-05 24.1 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|154149947|ref|YP_001403565.1| - 5.3e-05 23.4 0.3 0.38 10.9 0.0 3.8 4 0 0 4 4 4 2 PAS fold HATPase_c_3 PF13589.6 gi|154149947|ref|YP_001403565.1| - 0.085 12.7 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APG6_N PF17675.1 gi|154149947|ref|YP_001403565.1| - 0.89 10.1 6.2 0.5 10.9 3.8 1.8 2 0 0 2 2 2 0 Apg6 coiled-coil region ParE_toxin PF05016.15 gi|154149948|ref|YP_001403566.1| - 1.7e-06 28.5 0.6 1.9e-06 28.4 0.6 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|154149948|ref|YP_001403566.1| - 0.00043 20.2 0.4 0.0024 17.8 0.4 1.9 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system Thy1 PF02511.15 gi|154149948|ref|YP_001403566.1| - 0.11 12.3 0.3 0.12 12.1 0.3 1.1 1 0 0 1 1 1 0 Thymidylate synthase complementing protein MazE_antitoxin PF04014.18 gi|154149949|ref|YP_001403567.1| - 1.9e-05 24.4 0.3 3.2e-05 23.7 0.3 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF2375 PF09558.10 gi|154149949|ref|YP_001403567.1| - 0.1 12.7 0.1 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2375) adh_short_C2 PF13561.6 gi|154149950|ref|YP_001403568.1| - 1.3e-51 175.4 0.2 1.7e-51 175.1 0.2 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|154149950|ref|YP_001403568.1| - 4e-42 143.9 0.0 5.1e-42 143.6 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|154149950|ref|YP_001403568.1| - 4.9e-06 26.6 0.0 9.2e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|154149950|ref|YP_001403568.1| - 0.08 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF169 PF02596.15 gi|154149951|ref|YP_001403569.1| - 8.5e-37 127.1 0.1 9.8e-37 126.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 DUF169 PF02596.15 gi|154149952|ref|YP_001403570.1| - 2.7e-47 161.4 0.1 3.2e-47 161.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 FMN_red PF03358.15 gi|154149953|ref|YP_001403571.1| - 3.1e-25 88.7 0.0 4e-25 88.4 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154149953|ref|YP_001403571.1| - 3.3e-13 49.8 0.0 4.3e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold MarR PF01047.22 gi|154149954|ref|YP_001403572.1| - 4.9e-11 42.4 0.0 1e-10 41.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|154149954|ref|YP_001403572.1| - 7.3e-09 36.0 0.1 1.2e-08 35.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|154149954|ref|YP_001403572.1| - 2.4e-06 27.4 0.0 3.5e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|154149954|ref|YP_001403572.1| - 0.0021 17.9 0.1 0.0028 17.5 0.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_36 PF13730.6 gi|154149954|ref|YP_001403572.1| - 0.073 13.0 0.1 0.23 11.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HxlR PF01638.17 gi|154149954|ref|YP_001403572.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF2569 PF10754.9 gi|154149958|ref|YP_001403576.1| - 0.046 14.2 2.4 0.076 13.5 2.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) Neur_chan_LBD PF02931.23 gi|154149959|ref|YP_001403577.1| - 0.00035 20.1 0.0 0.00093 18.7 0.0 1.6 2 0 0 2 2 2 1 Neurotransmitter-gated ion-channel ligand binding domain DUF2070 PF09843.9 gi|154149959|ref|YP_001403577.1| - 2.3 6.4 5.7 3.7 5.7 5.7 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) COX2_TM PF02790.15 gi|154149959|ref|YP_001403577.1| - 5.4 7.2 6.6 14 5.9 0.5 3.0 3 1 0 3 3 3 0 Cytochrome C oxidase subunit II, transmembrane domain Glyoxalase_3 PF13468.6 gi|154149961|ref|YP_001403579.1| - 8.3e-40 136.8 0.1 1.1e-39 136.4 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|154149961|ref|YP_001403579.1| - 0.027 14.7 0.1 0.096 13.0 0.0 1.9 2 1 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Pro-kuma_activ PF09286.11 gi|154149963|ref|YP_001403581.1| - 0.18 12.1 0.5 4.3 7.6 0.5 2.1 1 1 0 1 1 1 0 Pro-kumamolisin, activation domain PALP PF00291.25 gi|154149964|ref|YP_001403582.1| - 1.1e-70 238.4 0.6 1.2e-70 238.2 0.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|154149964|ref|YP_001403582.1| - 0.0049 16.9 0.3 0.035 14.1 0.2 2.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase DFP PF04127.15 gi|154149964|ref|YP_001403582.1| - 0.045 13.6 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Abhydrolase_3 PF07859.13 gi|154149964|ref|YP_001403582.1| - 0.09 12.6 0.0 0.58 10.0 0.0 2.0 2 0 0 2 2 2 0 alpha/beta hydrolase fold Fer4 PF00037.27 gi|154149965|ref|YP_001403583.1| - 3.6e-12 45.5 22.8 8.6e-07 28.5 1.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154149965|ref|YP_001403583.1| - 1e-09 38.8 27.4 4.1e-07 30.5 16.0 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154149965|ref|YP_001403583.1| - 1.7e-09 37.7 13.0 1.7e-09 37.7 13.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154149965|ref|YP_001403583.1| - 5.8e-08 32.5 14.7 5.9e-06 26.1 1.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|154149965|ref|YP_001403583.1| - 7e-08 32.5 14.5 7e-08 32.5 14.5 2.6 1 1 2 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154149965|ref|YP_001403583.1| - 1.6e-07 31.0 14.1 2.7e-05 24.0 2.4 3.5 3 1 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|154149965|ref|YP_001403583.1| - 3.3e-07 30.8 22.9 0.00021 21.8 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154149965|ref|YP_001403583.1| - 2e-06 28.6 25.4 0.00015 22.6 1.6 2.4 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|154149965|ref|YP_001403583.1| - 2.3e-05 24.5 12.1 2.3e-05 24.5 12.1 2.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154149965|ref|YP_001403583.1| - 3e-05 24.4 26.5 0.001 19.5 1.0 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154149965|ref|YP_001403583.1| - 0.0018 18.6 2.1 0.0018 18.6 2.1 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|154149965|ref|YP_001403583.1| - 0.027 15.4 5.3 0.027 15.4 5.3 3.8 3 1 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|154149965|ref|YP_001403583.1| - 0.082 13.1 1.8 0.082 13.1 1.8 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|154149965|ref|YP_001403583.1| - 0.12 13.3 0.8 0.12 13.3 0.8 3.2 2 1 2 4 4 3 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|154149965|ref|YP_001403583.1| - 0.82 9.8 7.1 1.9 8.7 1.2 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S CdhD PF03599.16 gi|154149966|ref|YP_001403584.1| - 2.1e-12 46.5 0.0 2.8e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit HTH_5 PF01022.20 gi|154149967|ref|YP_001403585.1| - 2.7e-15 56.0 0.0 5e-15 55.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|154149967|ref|YP_001403585.1| - 1.3e-09 38.0 0.0 2.2e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|154149967|ref|YP_001403585.1| - 0.16 12.1 0.0 0.26 11.5 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Phage_holin_3_3 PF16083.5 gi|154149968|ref|YP_001403586.1| - 0.038 14.1 0.9 0.038 14.1 0.9 3.1 3 1 1 4 4 4 0 LydA holin phage, holin superfamily III ABC2_membrane PF01061.24 gi|154149970|ref|YP_001403588.1| - 7.6e-34 117.0 21.7 7.6e-34 117.0 21.7 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|154149970|ref|YP_001403588.1| - 2e-12 46.9 32.2 2.6e-12 46.5 32.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|154149970|ref|YP_001403588.1| - 3e-07 30.0 14.7 3e-07 30.0 14.7 1.8 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|154149971|ref|YP_001403589.1| - 5e-34 117.8 0.0 2.7e-33 115.4 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|154149971|ref|YP_001403589.1| - 1.8e-13 51.0 0.1 2.9e-09 37.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|154149971|ref|YP_001403589.1| - 3.5e-07 30.9 0.0 7.6e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|154149971|ref|YP_001403589.1| - 1.5e-06 28.2 0.0 0.0035 17.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|154149971|ref|YP_001403589.1| - 0.0017 17.8 0.0 0.12 11.7 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|154149971|ref|YP_001403589.1| - 0.0085 16.5 0.4 0.22 11.9 0.4 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|154149971|ref|YP_001403589.1| - 0.011 15.4 0.3 0.04 13.7 0.1 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|154149971|ref|YP_001403589.1| - 0.016 15.7 0.4 0.034 14.6 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|154149971|ref|YP_001403589.1| - 0.02 14.6 0.1 0.97 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|154149971|ref|YP_001403589.1| - 0.041 14.2 0.1 0.54 10.5 0.1 2.3 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|154149971|ref|YP_001403589.1| - 0.057 12.8 0.0 0.62 9.4 0.0 2.5 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI MukB PF04310.12 gi|154149971|ref|YP_001403589.1| - 0.15 11.8 0.1 0.31 10.8 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal Thymidylate_kin PF02223.17 gi|154149971|ref|YP_001403589.1| - 0.17 11.6 0.0 3.5 7.3 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase AAA_14 PF13173.6 gi|154149971|ref|YP_001403589.1| - 0.17 11.9 0.0 33 4.5 0.0 3.0 2 1 1 3 3 3 0 AAA domain Oxidored_molyb PF00174.19 gi|154149972|ref|YP_001403590.1| - 3.7e-34 117.8 0.0 5e-34 117.4 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain DUF362 PF04015.12 gi|154149973|ref|YP_001403591.1| - 4.8e-39 134.7 0.0 6.1e-39 134.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_16 PF13484.6 gi|154149974|ref|YP_001403592.1| - 1.3e-05 26.0 4.1 3.2e-05 24.8 4.1 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|154149974|ref|YP_001403592.1| - 0.2 12.3 6.6 0.19 12.4 1.7 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|154149974|ref|YP_001403592.1| - 0.26 11.2 7.3 0.11 12.3 1.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF2284 PF10050.9 gi|154149975|ref|YP_001403593.1| - 4.6e-48 163.1 0.0 5.4e-48 162.8 0.0 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) HIT PF01230.23 gi|154149976|ref|YP_001403594.1| - 4.1e-18 65.9 0.0 6.4e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|154149976|ref|YP_001403594.1| - 1.5e-05 25.5 0.0 1.9e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|154149976|ref|YP_001403594.1| - 0.00015 21.6 0.2 0.00031 20.6 0.2 1.5 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Pkinase PF00069.25 gi|154149978|ref|YP_001403596.1| - 7.5e-51 173.0 0.0 9.1e-51 172.7 0.0 1.0 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|154149978|ref|YP_001403596.1| - 1.7e-34 119.3 0.0 2.1e-34 119.0 0.0 1.0 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 gi|154149978|ref|YP_001403596.1| - 7.9e-10 39.1 0.1 0.00022 21.2 0.2 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kinase-like PF14531.6 gi|154149978|ref|YP_001403596.1| - 1.1e-06 28.2 0.0 1.6e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Kinase-like Kdo PF06293.14 gi|154149978|ref|YP_001403596.1| - 0.00056 19.3 0.0 0.00083 18.8 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 gi|154149978|ref|YP_001403596.1| - 0.014 15.0 0.0 0.031 13.9 0.0 1.5 1 1 1 2 2 2 0 RIO1 family Choline_kinase PF01633.20 gi|154149978|ref|YP_001403596.1| - 0.26 10.8 0.0 0.39 10.3 0.0 1.2 1 0 0 1 1 1 0 Choline/ethanolamine kinase P-II PF00543.22 gi|154149979|ref|YP_001403597.1| - 1.5e-32 112.3 0.8 1.6e-32 112.1 0.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|154149979|ref|YP_001403597.1| - 0.013 15.7 0.5 0.5 10.6 0.4 2.3 1 1 0 1 1 1 0 Cyclic-di-AMP receptor P-II PF00543.22 gi|154149980|ref|YP_001403598.1| - 4.7e-23 81.7 0.0 2.4e-22 79.4 0.0 1.8 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II P-II PF00543.22 gi|154149981|ref|YP_001403599.1| - 7.2e-22 77.9 0.2 1e-21 77.4 0.2 1.2 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|154149981|ref|YP_001403599.1| - 0.0021 18.3 0.1 0.0056 16.9 0.1 1.8 1 1 0 1 1 1 1 Cyclic-di-AMP receptor PP2C_2 PF13672.6 gi|154149982|ref|YP_001403600.1| - 2.6e-16 59.9 0.2 3.5e-16 59.5 0.2 1.2 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 gi|154149982|ref|YP_001403600.1| - 1.1e-08 35.1 0.1 5e-07 29.6 0.2 2.1 2 0 0 2 2 2 2 Protein phosphatase 2C SpoIIE PF07228.12 gi|154149982|ref|YP_001403600.1| - 4.3e-05 23.5 0.0 0.00012 22.1 0.0 1.7 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) AA_permease_2 PF13520.6 gi|154149983|ref|YP_001403601.1| - 2.7e-18 66.0 50.6 2.8e-18 66.0 49.9 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|154149983|ref|YP_001403601.1| - 8.8e-16 57.5 42.6 1.9e-15 56.4 42.6 1.6 1 1 0 1 1 1 1 Amino acid permease DUF1211 PF06736.11 gi|154149983|ref|YP_001403601.1| - 8.4 6.9 15.7 0.98 9.9 2.3 4.4 3 1 1 4 4 4 0 Protein of unknown function (DUF1211) SBF PF01758.16 gi|154149984|ref|YP_001403602.1| - 3.2e-14 53.1 13.8 6.4e-14 52.1 13.8 1.5 1 0 0 1 1 1 1 Sodium Bile acid symporter family KdpA PF03814.15 gi|154149986|ref|YP_001403604.1| - 5.4e-222 737.8 33.1 6.5e-222 737.6 33.1 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit DUF2754 PF10953.8 gi|154149986|ref|YP_001403604.1| - 0.55 10.5 6.2 7 7.0 0.7 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2754) Hydrolase PF00702.26 gi|154149987|ref|YP_001403605.1| - 2.7e-34 119.3 2.2 5e-34 118.4 2.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|154149987|ref|YP_001403605.1| - 1.3e-30 106.2 1.0 1.3e-30 106.2 1.0 2.9 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase_3 PF08282.12 gi|154149987|ref|YP_001403605.1| - 1.2e-05 25.2 0.6 6.7e-05 22.7 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|154149987|ref|YP_001403605.1| - 0.0031 17.9 0.0 0.013 15.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PAS_4 PF08448.10 gi|154149988|ref|YP_001403606.1| - 0.0024 18.1 0.0 0.0036 17.5 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|154149988|ref|YP_001403606.1| - 0.0041 17.1 0.0 0.0082 16.1 0.0 1.5 1 0 0 1 1 1 1 PAS domain MLTR_LBD PF17765.1 gi|154149988|ref|YP_001403606.1| - 0.015 15.4 0.1 0.023 14.8 0.1 1.2 1 0 0 1 1 1 0 MmyB-like transcription regulator ligand binding domain PAS PF00989.25 gi|154149988|ref|YP_001403606.1| - 0.067 13.2 0.0 0.16 12.0 0.0 1.7 2 1 0 2 2 2 0 PAS fold zf-C3HC4 PF00097.25 gi|154149988|ref|YP_001403606.1| - 2.7 8.0 8.6 0.16 11.9 0.8 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-piccolo PF05715.13 gi|154149988|ref|YP_001403606.1| - 4 7.7 7.8 0.24 11.6 1.1 2.0 2 0 0 2 2 2 0 Piccolo Zn-finger Cation_efflux PF01545.21 gi|154149989|ref|YP_001403607.1| - 5.3e-39 134.0 13.7 6.3e-39 133.8 13.7 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|154149989|ref|YP_001403607.1| - 1.4e-21 76.4 0.1 2.2e-21 75.8 0.1 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter SirB PF04247.12 gi|154149990|ref|YP_001403608.1| - 0.049 13.7 2.5 0.053 13.6 2.5 1.1 1 0 0 1 1 1 0 Invasion gene expression up-regulator, SirB PMT_2 PF13231.6 gi|154149992|ref|YP_001403610.1| - 3.1e-07 30.7 15.1 3.1e-07 30.7 15.1 3.9 2 1 2 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2184 PF09950.9 gi|154149993|ref|YP_001403611.1| - 1.2 8.5 5.0 1.5 8.2 5.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) DUF4349 PF14257.6 gi|154149994|ref|YP_001403612.1| - 5.7e-61 205.7 1.5 5.7e-61 205.7 1.5 1.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4349) EzrA PF06160.12 gi|154149994|ref|YP_001403612.1| - 0.001 17.4 0.3 0.0014 16.9 0.3 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA TNFR_16_TM PF18422.1 gi|154149994|ref|YP_001403612.1| - 0.074 13.0 1.0 0.15 12.0 1.0 1.5 1 0 0 1 1 1 0 Tumor necrosis factor receptor member 16 trans-membrane domain Bap31_Bap29_C PF18035.1 gi|154149994|ref|YP_001403612.1| - 0.12 12.4 0.2 0.19 11.7 0.2 1.3 1 0 0 1 1 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain Fib_alpha PF08702.10 gi|154149994|ref|YP_001403612.1| - 0.27 11.4 3.7 0.42 10.8 3.7 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF2730 PF10805.8 gi|154149994|ref|YP_001403612.1| - 0.73 10.0 3.7 1.1 9.3 0.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2730) NPV_P10 PF05531.12 gi|154149994|ref|YP_001403612.1| - 0.79 10.2 7.0 0.92 10.0 1.4 2.6 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein PrgI PF12666.7 gi|154149994|ref|YP_001403612.1| - 7.5 7.3 7.6 3.4 8.4 2.3 2.7 3 0 0 3 3 3 0 PrgI family protein Fer4_9 PF13187.6 gi|154149995|ref|YP_001403613.1| - 0.00093 19.3 9.7 0.0016 18.6 9.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154149995|ref|YP_001403613.1| - 0.0019 18.3 12.2 0.0027 17.8 12.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|154149995|ref|YP_001403613.1| - 0.089 12.6 2.8 0.089 12.6 2.8 2.6 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154149995|ref|YP_001403613.1| - 0.2 12.6 9.9 0.22 12.5 2.8 2.2 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Hemerythrin PF01814.23 gi|154149997|ref|YP_001403615.1| - 1.3e-12 48.5 1.2 1.5e-12 48.2 1.2 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain DDE_Tnp_ISL3 PF01610.17 gi|154149997|ref|YP_001403615.1| - 0.015 15.0 1.4 0.018 14.7 1.4 1.1 1 0 0 1 1 1 0 Transposase NEMO PF11577.8 gi|154149997|ref|YP_001403615.1| - 0.036 14.1 0.3 0.062 13.3 0.3 1.3 1 0 0 1 1 1 0 NF-kappa-B essential modulator NEMO FadA PF09403.10 gi|154149997|ref|YP_001403615.1| - 0.044 14.3 3.3 0.062 13.8 3.3 1.3 1 0 0 1 1 1 0 Adhesion protein FadA SQS_PSY PF00494.19 gi|154149997|ref|YP_001403615.1| - 0.06 12.8 0.1 0.12 11.8 0.1 1.5 1 1 0 1 1 1 0 Squalene/phytoene synthase Pirin PF02678.16 gi|154149998|ref|YP_001403616.1| - 8.2e-37 125.5 0.3 1.4e-36 124.8 0.3 1.3 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 gi|154149998|ref|YP_001403616.1| - 7.7e-30 103.3 0.0 3.7e-28 97.9 0.0 2.1 2 0 0 2 2 2 1 Pirin C-terminal cupin domain zinc_ribbon_2 PF13240.6 gi|154149999|ref|YP_001403617.1| - 0.00025 20.7 1.4 0.00038 20.1 1.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|154149999|ref|YP_001403617.1| - 0.0014 18.0 2.8 0.0023 17.3 2.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|154149999|ref|YP_001403617.1| - 0.0017 18.4 0.9 0.0026 17.7 0.9 1.3 1 0 0 1 1 1 1 Double zinc ribbon Pilin_N PF07790.11 gi|154149999|ref|YP_001403617.1| - 0.041 14.8 2.3 0.041 14.8 2.3 1.9 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal Nudix_N_2 PF14803.6 gi|154149999|ref|YP_001403617.1| - 0.07 13.1 1.5 0.78 9.7 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Phage_holin_1 PF04531.13 gi|154149999|ref|YP_001403617.1| - 0.24 11.9 3.2 0.51 10.9 0.3 2.4 2 0 0 2 2 2 0 Bacteriophage holin Fig1 PF12351.8 gi|154149999|ref|YP_001403617.1| - 0.31 10.9 6.2 0.49 10.3 6.2 1.3 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 UPF0547 PF10571.9 gi|154149999|ref|YP_001403617.1| - 0.81 9.8 5.2 0.37 10.9 2.5 1.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PRA1 PF03208.19 gi|154149999|ref|YP_001403617.1| - 3.2 7.4 8.1 5.7 6.5 8.1 1.4 1 0 0 1 1 1 0 PRA1 family protein GTP_EFTU PF00009.27 gi|154150000|ref|YP_001403618.1| - 8.7e-13 48.3 0.0 4.1e-11 42.8 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|154150000|ref|YP_001403618.1| - 1.6e-10 41.1 0.0 2e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|154150000|ref|YP_001403618.1| - 3.4e-10 40.1 0.0 1.2e-06 28.5 0.0 2.1 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|154150000|ref|YP_001403618.1| - 8.7e-06 25.7 0.0 0.0026 17.7 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase Roc PF08477.13 gi|154150000|ref|YP_001403618.1| - 2.1e-05 24.7 0.0 3.1e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|154150000|ref|YP_001403618.1| - 5.9e-05 22.7 0.0 9.7e-05 22.0 0.0 1.4 1 1 0 1 1 1 1 Ras family Arf PF00025.21 gi|154150000|ref|YP_001403618.1| - 6.6e-05 22.4 0.0 8.6e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 ADP-ribosylation factor family AAA_24 PF13479.6 gi|154150000|ref|YP_001403618.1| - 0.0017 18.2 0.1 0.0033 17.2 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|154150000|ref|YP_001403618.1| - 0.0042 17.4 0.1 0.0068 16.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|154150000|ref|YP_001403618.1| - 0.005 17.4 0.0 0.022 15.2 0.0 2.0 1 1 0 1 1 1 1 ABC transporter FeoB_N PF02421.18 gi|154150000|ref|YP_001403618.1| - 0.0054 16.3 0.0 0.022 14.3 0.0 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|154150000|ref|YP_001403618.1| - 0.0056 16.7 0.0 0.012 15.7 0.0 1.7 1 1 0 1 1 1 1 Dynamin family AAA_28 PF13521.6 gi|154150000|ref|YP_001403618.1| - 0.007 16.6 0.2 0.012 15.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain PduV-EutP PF10662.9 gi|154150000|ref|YP_001403618.1| - 0.0088 15.8 0.0 0.019 14.7 0.0 1.6 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|154150000|ref|YP_001403618.1| - 0.049 14.0 0.1 0.088 13.2 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|154150000|ref|YP_001403618.1| - 0.061 12.9 0.1 0.68 9.5 0.1 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|154150000|ref|YP_001403618.1| - 0.071 13.7 0.0 0.15 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|154150000|ref|YP_001403618.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.18 gi|154150000|ref|YP_001403618.1| - 0.14 11.9 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase HD PF01966.22 gi|154150001|ref|YP_001403619.1| - 1.7e-06 28.3 0.1 2.9e-06 27.5 0.1 1.5 1 0 0 1 1 1 1 HD domain PAS_9 PF13426.7 gi|154150002|ref|YP_001403620.1| - 5.5e-74 245.1 0.0 6.3e-13 48.9 0.0 8.4 8 0 0 8 8 8 6 PAS domain PAS PF00989.25 gi|154150002|ref|YP_001403620.1| - 1.6e-61 205.3 0.3 9.6e-11 41.7 0.0 8.6 8 1 0 8 8 8 6 PAS fold PAS_4 PF08448.10 gi|154150002|ref|YP_001403620.1| - 2.9e-55 185.2 2.1 9.7e-10 38.7 0.0 7.9 7 1 0 7 7 7 7 PAS fold PAS_8 PF13188.7 gi|154150002|ref|YP_001403620.1| - 1.9e-39 133.1 0.4 4.2e-06 26.6 0.0 7.3 8 0 0 8 8 8 6 PAS domain PAS_3 PF08447.12 gi|154150002|ref|YP_001403620.1| - 1.7e-32 111.6 0.0 1e-06 28.9 0.0 8.5 7 1 0 7 7 7 5 PAS fold Response_reg PF00072.24 gi|154150002|ref|YP_001403620.1| - 3.4e-19 69.1 0.0 1.4e-18 67.1 0.0 2.1 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|154150002|ref|YP_001403620.1| - 3.9e-12 46.7 0.0 1.1e-11 45.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|154150002|ref|YP_001403620.1| - 1.4e-05 25.2 7.7 1.2 9.3 0.0 7.5 7 3 0 7 7 7 2 PAS fold dCache_1 PF02743.18 gi|154150002|ref|YP_001403620.1| - 0.00014 21.7 3.0 0.00043 20.1 0.2 3.1 3 0 0 3 3 3 1 Cache domain PAS_10 PF13596.6 gi|154150002|ref|YP_001403620.1| - 0.0078 16.8 0.4 24 5.6 0.0 4.5 5 0 0 5 5 4 0 PAS domain MLTR_LBD PF17765.1 gi|154150002|ref|YP_001403620.1| - 0.047 13.8 0.0 3.7 7.6 0.0 3.5 3 0 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain SPOB_a PF14689.6 gi|154150002|ref|YP_001403620.1| - 0.067 12.9 0.2 0.21 11.3 0.2 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain OmpH PF03938.14 gi|154150002|ref|YP_001403620.1| - 3.1 8.1 23.0 0.63 10.4 2.1 5.2 5 0 0 5 5 5 0 Outer membrane protein (OmpH-like) Pro_isomerase PF00160.21 gi|154150003|ref|YP_001403621.1| - 7.5e-51 172.5 0.1 8.3e-51 172.4 0.1 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Pro_isomerase PF00160.21 gi|154150004|ref|YP_001403622.1| - 5.5e-51 173.0 0.0 6.5e-51 172.7 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Peptidase_M73 PF12389.8 gi|154150005|ref|YP_001403623.1| - 0.011 15.6 0.8 0.023 14.5 0.1 1.9 2 1 0 2 2 2 0 Camelysin metallo-endopeptidase Insulin_TMD PF17870.1 gi|154150005|ref|YP_001403623.1| - 0.022 14.8 1.0 5.2 7.2 0.2 3.0 3 0 0 3 3 3 0 Insulin receptor trans-membrane segment DUF3923 PF13061.6 gi|154150005|ref|YP_001403623.1| - 0.097 12.8 0.3 0.097 12.8 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3923) PEGA PF08308.11 gi|154150006|ref|YP_001403624.1| - 3.3e-56 187.1 28.9 5.1e-17 61.5 2.9 5.7 5 1 0 5 5 5 4 PEGA domain CarboxypepD_reg PF13620.6 gi|154150006|ref|YP_001403624.1| - 2.3e-10 40.6 25.2 0.0029 17.9 0.2 5.5 5 0 0 5 5 5 4 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|154150006|ref|YP_001403624.1| - 1.1e-07 31.7 16.0 0.00019 21.4 1.1 5.0 3 1 2 5 5 5 3 CarboxypepD_reg-like domain Big_3_5 PF16640.5 gi|154150006|ref|YP_001403624.1| - 0.0012 18.9 5.7 0.0012 18.9 5.7 6.9 1 1 6 7 7 7 1 Bacterial Ig-like domain (group 3) fn3_3 PF14686.6 gi|154150006|ref|YP_001403624.1| - 0.012 15.4 0.2 0.012 15.4 0.2 4.8 5 0 0 5 5 5 0 Polysaccharide lyase family 4, domain II DUF1533 PF07550.11 gi|154150006|ref|YP_001403624.1| - 0.13 12.2 3.4 6 6.8 0.1 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF1533) CBM_6 PF03422.15 gi|154150006|ref|YP_001403624.1| - 0.18 12.1 11.7 6.1 7.2 1.4 4.1 3 2 0 3 3 3 0 Carbohydrate binding module (family 6) Aminotran_1_2 PF00155.21 gi|154150007|ref|YP_001403625.1| - 1.7e-27 96.5 0.0 2.2e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|154150007|ref|YP_001403625.1| - 5.4e-06 25.5 0.0 7.5e-06 25.0 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase C_GCAxxG_C_C PF09719.10 gi|154150008|ref|YP_001403626.1| - 4.6e-31 107.6 0.2 5.3e-31 107.4 0.2 1.0 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) KapB PF08810.10 gi|154150009|ref|YP_001403627.1| - 0.17 12.1 0.5 0.89 9.7 0.0 2.3 2 1 1 3 3 3 0 Kinase associated protein B PAS_9 PF13426.7 gi|154150010|ref|YP_001403628.1| - 1.6e-11 44.3 0.0 4e-11 43.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|154150010|ref|YP_001403628.1| - 1.1e-10 41.7 0.0 2.1e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|154150010|ref|YP_001403628.1| - 3e-09 37.4 0.2 9e-09 35.8 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|154150010|ref|YP_001403628.1| - 4.7e-06 26.6 0.0 9e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|154150010|ref|YP_001403628.1| - 9.8e-06 25.8 0.0 2e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|154150010|ref|YP_001403628.1| - 1.3e-05 25.1 0.0 3.2e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|154150010|ref|YP_001403628.1| - 0.0057 16.6 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|154150010|ref|YP_001403628.1| - 0.018 15.1 0.2 0.08 13.0 0.0 2.3 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain N6_N4_Mtase PF01555.18 gi|154150012|ref|YP_001403630.1| - 3.8e-41 141.3 0.0 5e-41 140.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|154150012|ref|YP_001403630.1| - 0.0054 16.4 0.0 0.84 9.3 0.0 2.1 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 N6_Mtase PF02384.16 gi|154150012|ref|YP_001403630.1| - 0.0059 15.9 0.0 1.9 7.6 0.0 2.1 2 0 0 2 2 2 2 N-6 DNA Methylase Cons_hypoth95 PF03602.15 gi|154150012|ref|YP_001403630.1| - 0.026 14.1 0.1 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical protein 95 TrmO PF01980.16 gi|154150013|ref|YP_001403631.1| - 5.3e-35 120.2 0.0 6.7e-35 119.9 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O DUF2124 PF09897.9 gi|154150014|ref|YP_001403632.1| - 2.1e-49 167.0 0.0 2.4e-49 166.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) AIRS_C PF02769.22 gi|154150015|ref|YP_001403633.1| - 7.8e-38 130.1 0.5 7.3e-27 94.4 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|154150015|ref|YP_001403633.1| - 5.8e-18 65.3 0.1 3.2e-09 37.3 0.1 3.1 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|154150015|ref|YP_001403633.1| - 4.5e-15 55.9 0.0 1.4e-14 54.3 0.0 1.9 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GATase_5 PF13507.6 gi|154150016|ref|YP_001403634.1| - 7.3e-76 254.7 0.0 9e-76 254.4 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|154150016|ref|YP_001403634.1| - 0.0011 18.6 0.0 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|154150016|ref|YP_001403634.1| - 0.01 15.7 0.0 0.031 14.1 0.0 1.8 1 1 0 1 1 1 0 DJ-1/PfpI family GATase PF00117.28 gi|154150016|ref|YP_001403634.1| - 0.094 12.5 0.0 0.36 10.6 0.0 1.8 1 1 0 1 1 1 0 Glutamine amidotransferase class-I DZR PF12773.7 gi|154150017|ref|YP_001403635.1| - 8.4e-17 60.9 26.2 7.2e-10 38.7 5.8 2.4 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|154150017|ref|YP_001403635.1| - 1.4e-16 59.6 22.1 5.9e-06 25.8 0.7 3.3 3 0 0 3 3 3 3 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|154150017|ref|YP_001403635.1| - 1.2e-11 43.5 22.5 0.00018 20.8 2.5 3.5 3 0 0 3 3 3 3 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|154150017|ref|YP_001403635.1| - 2.1e-05 24.6 17.6 0.035 14.3 0.8 3.4 2 1 1 3 3 3 3 Nin one binding (NOB1) Zn-ribbon like ADK_lid PF05191.14 gi|154150017|ref|YP_001403635.1| - 0.00055 19.9 22.1 0.0063 16.5 0.9 5.2 3 2 1 4 4 4 2 Adenylate kinase, active site lid Nudix_N_2 PF14803.6 gi|154150017|ref|YP_001403635.1| - 0.0013 18.6 25.7 0.55 10.2 2.6 6.1 4 2 1 5 5 5 2 Nudix N-terminal Auto_anti-p27 PF06677.12 gi|154150017|ref|YP_001403635.1| - 0.0013 18.8 20.1 0.071 13.3 1.3 4.1 2 2 2 4 4 4 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_15 PF17032.5 gi|154150017|ref|YP_001403635.1| - 0.0028 18.4 16.6 0.62 10.8 1.2 3.2 3 0 0 3 3 3 2 zinc-ribbon family Unstab_antitox PF09720.10 gi|154150017|ref|YP_001403635.1| - 0.0082 16.2 0.1 0.017 15.1 0.1 1.5 1 0 0 1 1 1 1 Putative addiction module component Prok-RING_1 PF14446.6 gi|154150017|ref|YP_001403635.1| - 0.011 15.7 2.9 0.011 15.7 2.9 3.9 3 1 1 4 4 4 0 Prokaryotic RING finger family 1 zf-HIT PF04438.16 gi|154150017|ref|YP_001403635.1| - 0.026 14.4 4.0 0.026 14.4 4.0 4.6 3 2 1 4 4 4 0 HIT zinc finger DUF35_N PF12172.8 gi|154150017|ref|YP_001403635.1| - 0.13 12.2 15.9 10 6.1 0.1 4.4 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) CLIP1_ZNF PF16641.5 gi|154150017|ref|YP_001403635.1| - 0.15 11.9 2.0 28 4.7 0.1 3.2 3 0 0 3 3 3 0 CLIP1 zinc knuckle DUF2321 PF10083.9 gi|154150017|ref|YP_001403635.1| - 0.28 10.8 10.5 2.8 7.6 1.9 3.3 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2321) NMD3 PF04981.13 gi|154150017|ref|YP_001403635.1| - 0.41 10.1 7.7 0.46 9.9 1.3 2.2 1 1 0 2 2 2 0 NMD3 family PHF5 PF03660.14 gi|154150017|ref|YP_001403635.1| - 0.81 9.9 7.3 0.23 11.7 2.9 1.9 2 0 0 2 2 2 0 PHF5-like protein zf-C2HC5 PF06221.13 gi|154150017|ref|YP_001403635.1| - 1.4 9.0 20.1 1.2 9.2 6.4 3.8 1 1 2 3 3 3 0 Putative zinc finger motif, C2HC5-type OrfB_Zn_ribbon PF07282.11 gi|154150017|ref|YP_001403635.1| - 2 8.4 15.0 2.9 7.9 2.0 3.4 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|154150017|ref|YP_001403635.1| - 2.7 7.7 29.2 12 5.6 0.2 6.1 5 1 0 5 5 5 0 NADH pyrophosphatase zinc ribbon domain LUC7 PF03194.15 gi|154150017|ref|YP_001403635.1| - 3.1 7.4 5.3 11 5.6 0.3 2.9 2 1 0 3 3 3 0 LUC7 N_terminus UPF0547 PF10571.9 gi|154150017|ref|YP_001403635.1| - 4.6 7.4 28.6 3 8.0 0.5 4.9 3 3 1 4 4 4 0 Uncharacterised protein family UPF0547 Cript PF10235.9 gi|154150017|ref|YP_001403635.1| - 4.8 7.8 13.5 0.53 10.9 2.1 2.9 2 1 1 3 3 3 0 Microtubule-associated protein CRIPT GFA PF04828.14 gi|154150017|ref|YP_001403635.1| - 9 6.7 17.6 43 4.5 1.5 5.0 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme FrhB_FdhB_C PF04432.13 gi|154150019|ref|YP_001403637.1| - 2.7e-40 137.7 0.0 3.6e-40 137.3 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|154150019|ref|YP_001403637.1| - 1.5e-34 118.0 0.0 3e-34 117.0 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Oxidored_q6 PF01058.22 gi|154150020|ref|YP_001403638.1| - 1.3e-26 92.9 0.9 1.3e-26 92.9 0.9 2.3 2 1 1 3 3 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|154150020|ref|YP_001403638.1| - 1.4e-12 46.8 10.4 6.8e-09 35.2 2.9 4.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154150020|ref|YP_001403638.1| - 1.6e-09 38.2 9.8 1.6e-09 38.2 9.8 3.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150020|ref|YP_001403638.1| - 1.6e-08 34.5 21.5 1.3e-06 28.4 12.6 3.9 4 1 1 5 5 5 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150020|ref|YP_001403638.1| - 2.6e-08 33.9 9.7 2.6e-08 33.9 9.7 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154150020|ref|YP_001403638.1| - 8.2e-08 32.0 9.3 2.8e-05 24.0 2.4 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154150020|ref|YP_001403638.1| - 1.9e-07 31.9 14.7 0.00017 22.4 1.2 3.9 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|154150020|ref|YP_001403638.1| - 4.1e-05 23.4 12.0 0.0016 18.4 2.9 4.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154150020|ref|YP_001403638.1| - 0.0014 18.8 23.8 0.15 12.2 2.2 3.6 2 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150020|ref|YP_001403638.1| - 0.0028 18.0 12.7 0.0054 17.1 3.1 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|154150020|ref|YP_001403638.1| - 0.022 15.5 16.6 0.052 14.3 0.5 3.9 4 1 0 4 4 4 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|154150020|ref|YP_001403638.1| - 0.025 15.1 0.8 0.025 15.1 0.8 3.6 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|154150020|ref|YP_001403638.1| - 0.072 13.6 2.9 0.072 13.6 2.9 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154150020|ref|YP_001403638.1| - 0.097 13.1 24.2 0.088 13.3 2.9 3.4 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|154150020|ref|YP_001403638.1| - 1.1 10.2 20.0 0.71 10.8 0.5 3.5 3 1 0 3 3 3 0 4Fe-4S dicluster domain HycI PF01750.18 gi|154150021|ref|YP_001403639.1| - 1.4e-21 76.6 0.1 1.8e-21 76.3 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.19 gi|154150022|ref|YP_001403640.1| - 7.9e-32 110.8 7.4 1.3e-15 57.4 0.2 4.0 2 1 0 2 2 2 2 Nickel-dependent hydrogenase GCHY-1 PF02649.14 gi|154150023|ref|YP_001403641.1| - 2.2e-80 269.9 0.8 2.5e-80 269.7 0.8 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|154150023|ref|YP_001403641.1| - 0.005 17.4 0.2 0.77 10.3 0.0 3.1 2 1 0 2 2 2 1 Dihydroneopterin aldolase IlvN PF07991.12 gi|154150024|ref|YP_001403642.1| - 1.5e-75 252.3 0.7 2e-75 251.9 0.7 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|154150024|ref|YP_001403642.1| - 1.2e-62 210.4 0.4 1.8e-62 209.9 0.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.21 gi|154150024|ref|YP_001403642.1| - 1.1e-06 28.8 0.0 2.6e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|154150024|ref|YP_001403642.1| - 3e-06 27.5 0.0 6.8e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|154150024|ref|YP_001403642.1| - 5.9e-06 26.8 0.1 1.3e-05 25.6 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|154150024|ref|YP_001403642.1| - 9e-06 25.2 0.0 1.6e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|154150024|ref|YP_001403642.1| - 0.038 13.6 0.2 0.11 12.1 0.2 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FMN_red PF03358.15 gi|154150025|ref|YP_001403643.1| - 3.9e-11 42.9 0.0 4.9e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|154150025|ref|YP_001403643.1| - 1.1e-09 38.2 0.0 2.4e-05 24.1 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|154150025|ref|YP_001403643.1| - 5.5e-07 29.9 0.0 0.0026 18.0 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_2 PF02525.17 gi|154150025|ref|YP_001403643.1| - 8.2e-05 22.4 0.0 0.00018 21.3 0.0 1.7 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.25 gi|154150025|ref|YP_001403643.1| - 0.0017 18.6 0.0 0.01 16.1 0.0 2.3 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_4 PF12682.7 gi|154150025|ref|YP_001403643.1| - 0.01 15.5 0.0 0.058 13.1 0.0 1.9 1 1 0 1 1 1 0 Flavodoxin eIF-5_eIF-2B PF01873.17 gi|154150026|ref|YP_001403644.1| - 5e-38 129.6 0.0 6.9e-38 129.1 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|154150026|ref|YP_001403644.1| - 2.2e-05 24.4 0.1 5.7e-05 23.0 0.1 1.7 1 0 0 1 1 1 1 TRAM domain zf-IS66 PF13005.7 gi|154150026|ref|YP_001403644.1| - 0.027 14.9 0.9 36 4.9 0.1 3.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.10 gi|154150026|ref|YP_001403644.1| - 0.031 14.4 0.3 0.063 13.4 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|154150026|ref|YP_001403644.1| - 0.19 11.7 2.6 0.41 10.6 2.6 1.5 1 0 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|154150026|ref|YP_001403644.1| - 0.27 10.7 1.5 3.4 7.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_C2H2_13 PF18508.1 gi|154150026|ref|YP_001403644.1| - 0.31 10.7 1.4 0.8 9.3 0.1 2.2 2 0 0 2 2 2 0 Zinc finger domain RNA_pol_L_2 PF13656.6 gi|154150027|ref|YP_001403645.1| - 1e-19 70.0 0.1 1.2e-19 69.8 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|154150027|ref|YP_001403645.1| - 9.6e-05 21.7 0.0 0.00014 21.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Phage_cap_E PF03864.15 gi|154150027|ref|YP_001403645.1| - 0.017 14.3 0.0 0.018 14.2 0.0 1.0 1 0 0 1 1 1 0 Phage major capsid protein E Spore_YhaL PF14147.6 gi|154150027|ref|YP_001403645.1| - 0.22 11.3 0.2 0.32 10.7 0.2 1.2 1 0 0 1 1 1 0 Sporulation protein YhaL Lactamase_B_2 PF12706.7 gi|154150028|ref|YP_001403646.1| - 4.5e-29 101.4 0.0 5.4e-29 101.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|154150028|ref|YP_001403646.1| - 6.8e-14 52.3 0.1 1.2e-13 51.5 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|154150028|ref|YP_001403646.1| - 6.7e-10 39.1 0.0 2.7e-09 37.1 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.29 gi|154150029|ref|YP_001403647.1| - 1.9e-35 122.1 0.0 3.4e-35 121.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|154150029|ref|YP_001403647.1| - 6.6e-11 41.8 0.5 1.7e-10 40.6 0.5 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|154150029|ref|YP_001403647.1| - 2e-05 24.6 0.1 8.3e-05 22.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|154150029|ref|YP_001403647.1| - 6.7e-05 22.6 0.0 0.0061 16.2 0.0 2.4 1 1 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|154150029|ref|YP_001403647.1| - 7.3e-05 22.6 0.0 0.00019 21.2 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|154150029|ref|YP_001403647.1| - 7.4e-05 22.6 0.0 0.00017 21.4 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|154150029|ref|YP_001403647.1| - 0.00089 19.7 0.0 0.032 14.6 0.0 2.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|154150029|ref|YP_001403647.1| - 0.0029 18.2 0.0 0.0085 16.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|154150029|ref|YP_001403647.1| - 0.0032 16.7 0.0 0.0075 15.5 0.0 1.5 1 1 0 1 1 1 1 TIP49 P-loop domain ABC_tran PF00005.27 gi|154150029|ref|YP_001403647.1| - 0.0072 16.8 0.0 0.015 15.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_11 PF13086.6 gi|154150029|ref|YP_001403647.1| - 0.0075 16.1 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|154150029|ref|YP_001403647.1| - 0.01 16.1 0.3 1 9.7 0.0 2.6 1 1 1 2 2 2 0 AAA domain DUF815 PF05673.13 gi|154150029|ref|YP_001403647.1| - 0.012 14.8 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|154150029|ref|YP_001403647.1| - 0.017 14.6 0.0 0.033 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|154150029|ref|YP_001403647.1| - 0.034 13.5 0.1 0.085 12.2 0.1 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|154150029|ref|YP_001403647.1| - 0.035 14.3 0.0 0.13 12.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|154150029|ref|YP_001403647.1| - 0.035 14.2 0.0 0.075 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_28 PF13521.6 gi|154150029|ref|YP_001403647.1| - 0.037 14.3 0.0 0.16 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|154150029|ref|YP_001403647.1| - 0.091 12.2 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_14 PF13173.6 gi|154150029|ref|YP_001403647.1| - 0.093 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|154150029|ref|YP_001403647.1| - 0.13 12.3 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|154150029|ref|YP_001403647.1| - 0.13 11.9 0.1 0.33 10.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain MnmE_helical PF12631.7 gi|154150029|ref|YP_001403647.1| - 0.15 12.2 0.8 0.23 11.6 0.2 1.5 2 0 0 2 2 1 0 MnmE helical domain Peptidase_M24 PF00557.24 gi|154150030|ref|YP_001403648.1| - 1.4e-37 129.5 0.0 1.8e-37 129.1 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.24 gi|154150031|ref|YP_001403649.1| - 1.1e-42 146.1 0.7 1.6e-42 145.6 0.7 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF2207 PF09972.9 gi|154150032|ref|YP_001403650.1| - 0.0042 15.9 0.3 0.0042 15.9 0.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) DUF4271 PF14093.6 gi|154150032|ref|YP_001403650.1| - 0.0098 15.8 2.3 0.011 15.6 2.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4271) TraQ PF09679.10 gi|154150032|ref|YP_001403650.1| - 0.013 15.4 0.6 0.015 15.2 0.6 1.1 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) DUF4131 PF13567.6 gi|154150032|ref|YP_001403650.1| - 0.37 10.4 5.7 0.43 10.2 5.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PhoR PF11808.8 gi|154150032|ref|YP_001403650.1| - 0.54 10.7 6.9 0.88 10.0 6.9 1.4 1 1 0 1 1 1 0 Phosphate regulon sensor protein PhoR Ribosomal_S19e PF01090.19 gi|154150033|ref|YP_001403651.1| - 0.026 14.2 0.0 1.3 8.7 0.0 2.1 1 1 0 2 2 2 0 Ribosomal protein S19e TrmB PF01978.19 gi|154150033|ref|YP_001403651.1| - 0.038 13.9 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HetR_C PF18460.1 gi|154150033|ref|YP_001403651.1| - 0.058 13.3 0.1 0.52 10.3 0.0 2.0 2 0 0 2 2 2 0 Heterocyst differentiation regulator C-terminal Hood domain Ldh_1_N PF00056.23 gi|154150035|ref|YP_001403653.1| - 6.7e-31 107.3 0.1 9.4e-31 106.8 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|154150035|ref|YP_001403653.1| - 5e-23 81.9 0.1 8.8e-23 81.1 0.1 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Semialdhyde_dh PF01118.24 gi|154150035|ref|YP_001403653.1| - 0.00083 19.8 0.0 0.0015 18.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain PK_C PF02887.16 gi|154150035|ref|YP_001403653.1| - 0.018 15.3 0.0 4.1 7.7 0.0 2.4 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain Glyco_hydro_4 PF02056.16 gi|154150035|ref|YP_001403653.1| - 0.097 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase EF1_GNE PF00736.19 gi|154150036|ref|YP_001403654.1| - 3e-17 62.5 0.1 3.5e-17 62.4 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|298206421|ref|YP_003717808.1| - 3e-09 36.7 10.8 3.6e-07 30.0 5.6 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DUF1272 PF06906.11 gi|298206421|ref|YP_003717808.1| - 6.5e-05 22.9 8.7 9.3e-05 22.4 8.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) DZR PF12773.7 gi|298206421|ref|YP_003717808.1| - 0.0014 18.6 13.1 0.017 15.2 13.1 2.1 1 1 0 1 1 1 1 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|298206421|ref|YP_003717808.1| - 0.0015 18.6 0.5 0.0015 18.6 0.5 2.6 2 1 1 3 3 3 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.6 gi|298206421|ref|YP_003717808.1| - 0.0099 15.6 1.0 0.0099 15.6 1.0 3.0 3 1 0 3 3 3 2 zinc-ribbon domain zf-Mss51 PF13824.6 gi|298206421|ref|YP_003717808.1| - 0.019 15.1 9.9 0.27 11.4 2.4 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 SP2 PF03014.14 gi|298206421|ref|YP_003717808.1| - 0.044 12.2 1.7 0.043 12.2 1.7 1.0 1 0 0 1 1 1 0 Structural protein 2 Rhodanese_C PF12368.8 gi|298206421|ref|YP_003717808.1| - 0.047 14.1 8.7 0.054 13.9 8.7 1.1 1 0 0 1 1 1 0 Rhodanase C-terminal OrfB_Zn_ribbon PF07282.11 gi|298206421|ref|YP_003717808.1| - 0.065 13.2 1.0 0.065 13.2 1.0 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|298206421|ref|YP_003717808.1| - 0.073 13.1 10.4 0.41 10.7 10.4 1.8 1 1 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.6 gi|298206421|ref|YP_003717808.1| - 0.084 12.8 12.2 0.057 13.4 4.4 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 C1_2 PF03107.16 gi|298206421|ref|YP_003717808.1| - 0.11 12.8 11.4 0.6 10.5 5.5 2.5 1 1 1 2 2 2 0 C1 domain zf-CHY PF05495.12 gi|298206421|ref|YP_003717808.1| - 0.11 13.0 8.9 0.41 11.2 9.0 1.7 1 1 0 1 1 1 0 CHY zinc finger C1_1 PF00130.22 gi|298206421|ref|YP_003717808.1| - 0.12 12.3 9.2 0.17 11.8 5.1 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PhnA_Zn_Ribbon PF08274.12 gi|298206421|ref|YP_003717808.1| - 0.16 12.0 9.7 0.76 9.8 1.7 2.7 2 2 0 2 2 2 0 PhnA Zinc-Ribbon A2L_zn_ribbon PF08792.10 gi|298206421|ref|YP_003717808.1| - 0.18 11.6 9.2 0.93 9.3 0.8 3.2 3 1 0 3 3 3 0 A2L zinc ribbon domain FYVE_2 PF02318.16 gi|298206421|ref|YP_003717808.1| - 0.38 11.0 4.6 0.42 10.8 4.6 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Zn_Tnp_IS91 PF14319.6 gi|298206421|ref|YP_003717808.1| - 0.62 10.1 9.5 1.2 9.2 9.5 1.5 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-RING_5 PF14634.6 gi|298206421|ref|YP_003717808.1| - 0.67 10.0 11.3 10 6.2 11.3 2.4 1 1 0 1 1 1 0 zinc-RING finger domain PolC_DP2 PF03833.13 gi|298206421|ref|YP_003717808.1| - 0.92 7.3 6.1 0.95 7.2 6.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ACC PF17848.1 gi|298206421|ref|YP_003717808.1| - 1 9.5 18.4 3.1 7.9 0.4 3.9 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain HypA PF01155.19 gi|298206421|ref|YP_003717808.1| - 1.2 9.2 11.3 3.3 7.8 6.5 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_9 PF14369.6 gi|298206421|ref|YP_003717808.1| - 1.2 9.5 15.3 10 6.4 4.5 3.4 2 2 1 3 3 3 0 zinc-ribbon zinc_ribbon_10 PF10058.9 gi|298206421|ref|YP_003717808.1| - 1.3 8.8 13.0 7.6 6.3 1.2 3.0 2 2 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein YhfH PF14149.6 gi|298206421|ref|YP_003717808.1| - 1.6 8.7 11.4 9.2 6.3 0.2 3.4 3 1 0 3 3 3 0 YhfH-like protein TF_Zn_Ribbon PF08271.12 gi|298206421|ref|YP_003717808.1| - 1.9 8.1 13.2 0.54 9.8 1.5 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|298206421|ref|YP_003717808.1| - 2.4 8.1 13.7 5.7 6.9 8.4 2.8 2 1 0 2 2 2 0 Nudix N-terminal ADK_lid PF05191.14 gi|298206421|ref|YP_003717808.1| - 3.3 7.8 9.3 9.8 6.3 0.2 3.3 3 1 0 3 3 3 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 gi|298206421|ref|YP_003717808.1| - 3.6 7.8 16.6 3 8.0 9.8 2.8 1 1 0 2 2 2 0 Zinc ribbon domain DUF2072 PF09845.9 gi|298206421|ref|YP_003717808.1| - 6.6 7.0 9.5 1.5 9.1 1.5 2.0 1 1 1 2 2 2 0 Zn-ribbon containing protein zf-TFIIB PF13453.6 gi|298206421|ref|YP_003717808.1| - 7 6.1 16.7 28 4.1 0.4 3.5 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-AN1 PF01428.16 gi|298206421|ref|YP_003717808.1| - 7.5 6.8 11.5 15 5.9 2.8 2.6 2 1 0 2 2 2 0 AN1-like Zinc finger zf_UBZ PF18439.1 gi|298206421|ref|YP_003717808.1| - 8 6.2 13.3 4.3 7.0 0.5 3.7 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|298206421|ref|YP_003717808.1| - 8.3 6.2 15.6 1.7 8.4 0.3 3.8 4 0 0 4 4 4 0 Rubredoxin metal binding domain AA_kinase PF00696.28 gi|154150037|ref|YP_001403655.1| - 2.3e-08 33.9 0.1 0.0018 18.0 0.0 2.2 1 1 1 2 2 2 2 Amino acid kinase family PLDc_2 PF13091.6 gi|154150038|ref|YP_001403656.1| - 3.2e-37 127.4 0.0 6.8e-21 74.6 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|154150038|ref|YP_001403656.1| - 4e-07 29.9 1.9 0.011 15.9 0.5 2.6 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|154150038|ref|YP_001403656.1| - 0.00039 19.7 0.0 0.35 10.0 0.0 2.4 2 0 0 2 2 2 2 Archaeal transcriptional regulator TrmB LTD PF00932.19 gi|154150038|ref|YP_001403656.1| - 0.0041 17.5 0.2 0.03 14.7 0.0 2.5 2 1 0 2 2 2 1 Lamin Tail Domain Asparaginase_C PF17763.1 gi|154150038|ref|YP_001403656.1| - 0.066 13.4 0.1 0.13 12.5 0.1 1.4 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain BKACE PF05853.12 gi|154150038|ref|YP_001403656.1| - 0.13 11.5 0.1 0.85 8.9 0.0 2.0 2 0 0 2 2 2 0 beta-keto acid cleavage enzyme HTH_3 PF01381.22 gi|154150039|ref|YP_001403657.1| - 1.1e-06 28.6 0.2 1.7e-06 28.0 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|154150039|ref|YP_001403657.1| - 3.1e-05 23.6 0.1 5.4e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 gi|154150039|ref|YP_001403657.1| - 0.00016 21.1 0.1 0.00023 20.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_31 PF13560.6 gi|154150039|ref|YP_001403657.1| - 0.00018 21.7 0.1 0.00025 21.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|154150039|ref|YP_001403657.1| - 0.00024 20.9 0.1 0.00032 20.5 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_37 PF13744.6 gi|154150039|ref|YP_001403657.1| - 0.00027 20.8 0.0 0.00041 20.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|154150039|ref|YP_001403657.1| - 0.00052 19.6 0.1 0.00075 19.1 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|154150039|ref|YP_001403657.1| - 0.00065 19.2 0.0 0.00089 18.7 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|154150039|ref|YP_001403657.1| - 0.001 19.1 0.1 0.0014 18.7 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|154150039|ref|YP_001403657.1| - 0.0029 17.6 0.0 0.0034 17.3 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_1 PF00126.27 gi|154150039|ref|YP_001403657.1| - 0.0045 16.9 0.1 0.0062 16.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family YdaS_antitoxin PF15943.5 gi|154150039|ref|YP_001403657.1| - 0.0068 16.2 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF134 PF02001.16 gi|154150039|ref|YP_001403657.1| - 0.0081 16.7 0.1 0.0097 16.4 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF134 HTH_29 PF13551.6 gi|154150039|ref|YP_001403657.1| - 0.012 15.7 0.1 0.024 14.7 0.1 1.5 2 0 0 2 2 2 0 Winged helix-turn helix P22_Cro PF14549.6 gi|154150039|ref|YP_001403657.1| - 0.015 15.2 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_11 PF08279.12 gi|154150039|ref|YP_001403657.1| - 0.019 14.9 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 HTH domain LacI PF00356.21 gi|154150039|ref|YP_001403657.1| - 0.022 14.6 0.7 0.1 12.4 0.1 2.0 1 1 1 2 2 2 0 Bacterial regulatory proteins, lacI family KORA PF16509.5 gi|154150039|ref|YP_001403657.1| - 0.024 14.9 0.1 0.031 14.5 0.1 1.2 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor Cro PF09048.10 gi|154150039|ref|YP_001403657.1| - 0.026 14.5 0.1 0.036 14.1 0.1 1.3 1 0 0 1 1 1 0 Cro TnsD PF15978.5 gi|154150039|ref|YP_001403657.1| - 0.048 12.7 0.0 0.055 12.5 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_8 PF02954.19 gi|154150039|ref|YP_001403657.1| - 0.068 13.0 0.1 0.1 12.4 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family UPF0175 PF03683.13 gi|154150039|ref|YP_001403657.1| - 0.069 12.9 0.0 0.088 12.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) HTH_IclR PF09339.10 gi|154150039|ref|YP_001403657.1| - 0.086 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|154150039|ref|YP_001403657.1| - 0.088 12.7 0.4 0.28 11.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_17 PF12728.7 gi|154150039|ref|YP_001403657.1| - 0.1 12.8 0.3 0.29 11.3 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_CI_repr PF07022.13 gi|154150039|ref|YP_001403657.1| - 0.11 12.6 0.1 0.16 12.0 0.1 1.4 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Phage_NinH PF06322.11 gi|154150039|ref|YP_001403657.1| - 0.16 11.9 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Phage NinH protein HTH_24 PF13412.6 gi|154150040|ref|YP_001403658.1| - 0.00025 20.5 0.0 0.00039 19.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|154150040|ref|YP_001403658.1| - 0.0011 18.8 0.0 0.0014 18.5 0.0 1.1 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|154150040|ref|YP_001403658.1| - 0.003 17.5 0.1 0.005 16.7 0.1 1.5 1 1 1 2 2 2 1 MarR family TFIIE_alpha PF02002.17 gi|154150040|ref|YP_001403658.1| - 0.0078 16.1 0.0 0.009 15.9 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_micro PF17007.5 gi|154150040|ref|YP_001403658.1| - 0.0082 15.0 0.0 0.0088 14.9 0.0 1.0 1 0 0 1 1 1 1 HTH-like HTH_20 PF12840.7 gi|154150040|ref|YP_001403658.1| - 0.021 14.9 0.0 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|154150040|ref|YP_001403658.1| - 0.039 13.9 0.2 0.054 13.4 0.2 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain tRNA_anti-codon PF01336.25 gi|154150041|ref|YP_001403659.1| - 0.0082 16.1 0.2 0.044 13.8 0.2 2.0 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain Big_11 PF18200.1 gi|154150041|ref|YP_001403659.1| - 0.021 14.7 0.6 1.6 8.7 0.2 2.3 1 1 1 2 2 2 0 Bacterial Ig-like domain Regulator_TrmB PF11495.8 gi|154150041|ref|YP_001403659.1| - 0.043 13.0 0.5 0.071 12.3 0.5 1.6 1 1 0 1 1 1 0 Archaeal transcriptional regulator TrmB QRPTase_C PF01729.19 gi|154150042|ref|YP_001403660.1| - 9e-46 155.7 0.3 1.2e-45 155.4 0.3 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|154150042|ref|YP_001403660.1| - 1.5e-24 85.9 0.0 2.6e-24 85.1 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Biotin_lipoyl_2 PF13533.6 gi|154150042|ref|YP_001403660.1| - 0.069 13.0 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Biotin-lipoyl like DUF108 PF01958.18 gi|154150043|ref|YP_001403661.1| - 8.1e-30 103.1 0.0 1.3e-29 102.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|154150043|ref|YP_001403661.1| - 3.8e-18 66.2 0.4 7.6e-18 65.3 0.2 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|154150043|ref|YP_001403661.1| - 8.6e-06 25.9 0.1 2.1e-05 24.6 0.1 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 gi|154150043|ref|YP_001403661.1| - 0.00016 22.2 0.2 0.00032 21.2 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|154150043|ref|YP_001403661.1| - 0.00064 20.5 0.2 0.00096 20.0 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|154150043|ref|YP_001403661.1| - 0.0019 17.6 0.1 0.0026 17.1 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Radical_SAM PF04055.21 gi|154150044|ref|YP_001403662.1| - 2.7e-21 76.7 0.0 6e-21 75.5 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|154150044|ref|YP_001403662.1| - 1.6e-18 66.6 0.0 2.8e-18 65.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 MmoB_DmpM PF02406.17 gi|154150044|ref|YP_001403662.1| - 0.085 13.1 0.0 0.35 11.1 0.0 1.9 2 0 0 2 2 2 0 MmoB/DmpM family TPP_enzyme_C PF02775.21 gi|154150046|ref|YP_001403664.1| - 5.8e-30 104.1 1.1 1.2e-29 103.0 1.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|154150046|ref|YP_001403664.1| - 2.9e-07 30.5 0.0 8.5e-07 28.9 0.0 1.8 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|154150046|ref|YP_001403664.1| - 5.7e-07 29.1 17.5 0.00013 21.6 3.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154150046|ref|YP_001403664.1| - 1.4e-05 24.9 13.0 0.0054 16.8 2.0 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|154150046|ref|YP_001403664.1| - 5.4e-05 23.0 3.3 5.4e-05 23.0 3.3 4.1 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154150046|ref|YP_001403664.1| - 0.00011 22.2 11.6 0.00065 19.8 11.1 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|154150046|ref|YP_001403664.1| - 0.00067 20.2 11.9 0.03 14.9 0.7 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150046|ref|YP_001403664.1| - 0.001 19.2 10.0 0.001 19.2 10.0 2.3 3 0 0 3 3 1 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|154150046|ref|YP_001403664.1| - 0.0061 16.2 0.4 0.061 12.9 0.0 2.5 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_16 PF13484.6 gi|154150046|ref|YP_001403664.1| - 0.0089 16.9 7.3 0.057 14.4 1.3 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|154150046|ref|YP_001403664.1| - 0.013 15.6 16.9 0.024 14.7 13.2 2.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150046|ref|YP_001403664.1| - 0.047 14.2 18.6 0.056 14.0 2.0 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|154150046|ref|YP_001403664.1| - 0.65 10.6 11.8 1.8 9.2 2.1 2.8 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|154150046|ref|YP_001403664.1| - 1.5 9.6 7.8 19 6.1 1.4 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|154150046|ref|YP_001403664.1| - 4.5 8.4 17.2 21 6.4 2.4 3.4 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.18 gi|154150047|ref|YP_001403665.1| - 2.8e-36 125.2 0.0 3.3e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase N6_N4_Mtase PF01555.18 gi|154150048|ref|YP_001403666.1| - 7.2e-35 120.8 0.0 6.1e-34 117.7 0.0 1.9 1 1 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|154150048|ref|YP_001403666.1| - 1.3e-05 25.0 0.0 0.17 11.6 0.0 2.4 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|154150048|ref|YP_001403666.1| - 0.054 13.1 0.0 3.6 7.1 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|154150048|ref|YP_001403666.1| - 0.17 11.5 0.0 2.8 7.5 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Phage_integrase PF00589.22 gi|154150049|ref|YP_001403667.1| - 3.6e-21 75.7 0.0 8.6e-21 74.5 0.0 1.6 1 0 0 1 1 1 1 Phage integrase family TraC_F_IV PF11130.8 gi|154150049|ref|YP_001403667.1| - 0.0013 18.4 0.0 0.0023 17.6 0.0 1.3 1 0 0 1 1 1 1 F pilus assembly Type-IV secretion system for plasmid transfer DZR PF12773.7 gi|154150049|ref|YP_001403667.1| - 0.0076 16.2 0.8 0.016 15.2 0.8 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-tcix PF14952.6 gi|154150049|ref|YP_001403667.1| - 0.0087 15.7 1.3 0.017 14.7 1.3 1.4 1 0 0 1 1 1 1 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_15 PF17032.5 gi|154150049|ref|YP_001403667.1| - 0.016 16.0 0.2 0.035 14.8 0.2 1.6 1 0 0 1 1 1 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|154150049|ref|YP_001403667.1| - 0.12 11.8 4.7 0.28 10.6 4.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain RecR PF02132.15 gi|154150049|ref|YP_001403667.1| - 0.79 9.3 3.1 1.9 8.1 3.1 1.7 1 0 0 1 1 1 0 RecR protein zinc_ribbon_2 PF13240.6 gi|154150054|ref|YP_001403672.1| - 2.6e-08 33.3 3.5 4.5e-08 32.6 3.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|154150054|ref|YP_001403672.1| - 5e-06 26.4 1.0 6.5e-06 26.1 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|154150054|ref|YP_001403672.1| - 0.00021 20.6 3.7 0.00038 19.8 3.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain LapA_dom PF06305.11 gi|154150054|ref|YP_001403672.1| - 0.0057 16.4 0.4 0.011 15.6 0.4 1.6 1 1 0 1 1 1 1 Lipopolysaccharide assembly protein A domain Nudix_N_2 PF14803.6 gi|154150054|ref|YP_001403672.1| - 0.013 15.4 1.9 1.9 8.4 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal DivIC PF04977.15 gi|154150054|ref|YP_001403672.1| - 0.041 13.7 0.3 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 Septum formation initiator zf-RRN7 PF11781.8 gi|154150054|ref|YP_001403672.1| - 0.082 12.6 3.3 1.8 8.3 0.4 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Val_tRNA-synt_C PF10458.9 gi|154150054|ref|YP_001403672.1| - 0.12 12.6 2.0 0.22 11.8 2.0 1.4 1 0 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm BRI3BP PF14965.6 gi|154150054|ref|YP_001403672.1| - 0.15 11.6 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Negative regulator of p53/TP53 GFA PF04828.14 gi|154150054|ref|YP_001403672.1| - 0.17 12.3 2.5 0.71 10.2 0.4 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-RanBP PF00641.18 gi|154150054|ref|YP_001403672.1| - 0.18 11.2 3.7 0.31 10.4 3.7 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others FlxA PF14282.6 gi|154150054|ref|YP_001403672.1| - 0.18 11.8 2.9 3.4 7.7 0.0 2.1 2 0 0 2 2 2 0 FlxA-like protein DHHC PF01529.20 gi|154150054|ref|YP_001403672.1| - 0.2 11.8 0.3 1.6 8.9 0.3 1.9 2 0 0 2 2 2 0 DHHC palmitoyltransferase CcmH PF03918.14 gi|154150054|ref|YP_001403672.1| - 0.4 10.0 0.0 0.4 10.0 0.0 1.8 2 0 0 2 2 2 0 Cytochrome C biogenesis protein zinc_ribbon_15 PF17032.5 gi|154150054|ref|YP_001403672.1| - 0.41 11.4 3.6 0.74 10.6 3.6 1.4 1 0 0 1 1 1 0 zinc-ribbon family A2L_zn_ribbon PF08792.10 gi|154150054|ref|YP_001403672.1| - 1.4 8.7 6.7 4.2 7.2 1.0 2.4 1 1 1 2 2 2 0 A2L zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|154150054|ref|YP_001403672.1| - 4.1 7.7 6.5 11 6.3 0.4 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|154150055|ref|YP_001403673.1| - 1.1e-08 34.4 5.8 3.3e-08 33.0 5.8 1.8 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|154150055|ref|YP_001403673.1| - 9.5e-06 25.5 2.1 9.5e-06 25.5 2.1 1.6 2 0 0 2 2 2 1 Double zinc ribbon DUF1579 PF07617.11 gi|154150055|ref|YP_001403673.1| - 0.0065 16.4 0.1 0.014 15.4 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1579) SdrD_B PF17210.3 gi|154150055|ref|YP_001403673.1| - 0.0079 16.4 2.3 0.0094 16.2 1.2 1.6 1 1 1 2 2 2 1 SdrD B-like domain zf-ribbon_3 PF13248.6 gi|154150055|ref|YP_001403673.1| - 0.04 13.3 3.5 0.083 12.3 3.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain TMEM18 PF14770.6 gi|154150055|ref|YP_001403673.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Transmembrane protein 18 DUF515 PF04415.12 gi|154150055|ref|YP_001403673.1| - 0.29 9.5 0.2 0.5 8.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Nudix_N_2 PF14803.6 gi|154150055|ref|YP_001403673.1| - 0.31 11.0 1.9 16 5.5 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal DHHC PF01529.20 gi|154150055|ref|YP_001403673.1| - 0.58 10.3 2.3 1.5 8.9 0.4 2.1 2 0 0 2 2 2 0 DHHC palmitoyltransferase zinc_ribbon_15 PF17032.5 gi|154150055|ref|YP_001403673.1| - 0.98 10.2 4.3 2.3 9.0 4.3 1.6 1 0 0 1 1 1 0 zinc-ribbon family DUF2116 PF09889.9 gi|154150055|ref|YP_001403673.1| - 1.4 9.0 3.0 11 6.1 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) TruB_N PF01509.18 gi|154150056|ref|YP_001403674.1| - 6.9e-24 84.9 0.1 1.9e-13 51.1 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|154150056|ref|YP_001403674.1| - 7.9e-23 80.4 1.0 1.6e-22 79.4 1.0 1.6 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|154150056|ref|YP_001403674.1| - 7.1e-10 38.7 0.1 1.5e-09 37.7 0.1 1.5 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|154150056|ref|YP_001403674.1| - 4.8e-05 23.3 0.3 0.00017 21.6 0.1 2.0 2 0 0 2 2 2 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|154150056|ref|YP_001403674.1| - 0.01 16.1 0.0 0.41 10.9 0.0 2.4 2 0 0 2 2 2 0 UPF0113 PUA domain HEM4 PF02602.15 gi|154150057|ref|YP_001403675.1| - 5.8e-16 58.5 0.0 7.8e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TctA PF01970.16 gi|154150058|ref|YP_001403676.1| - 3.7e-57 193.9 47.1 4.5e-57 193.6 47.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Nop PF01798.18 gi|154150059|ref|YP_001403677.1| - 1.9e-37 129.0 0.5 3.8e-34 118.1 0.2 2.2 2 0 0 2 2 2 2 snoRNA binding domain, fibrillarin Fibrillarin PF01269.17 gi|154150060|ref|YP_001403678.1| - 4.3e-65 219.0 0.0 5.1e-65 218.8 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.12 gi|154150060|ref|YP_001403678.1| - 0.0056 15.8 0.0 0.0066 15.6 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase DUF3123 PF11321.8 gi|154150060|ref|YP_001403678.1| - 0.19 12.4 0.3 0.28 11.9 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3123) DUF1614 PF07758.11 gi|154150061|ref|YP_001403679.1| - 9.3e-39 133.2 12.3 9.3e-39 133.2 12.3 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) Sre PF03125.18 gi|154150061|ref|YP_001403679.1| - 0.069 12.3 0.5 0.13 11.4 0.5 1.4 1 0 0 1 1 1 0 C. elegans Sre G protein-coupled chemoreceptor Thymidylat_synt PF00303.19 gi|154150064|ref|YP_001403682.1| - 9e-15 54.5 0.1 1.5e-14 53.8 0.1 1.4 1 1 1 2 2 2 1 Thymidylate synthase DUF3821 PF12863.7 gi|154150065|ref|YP_001403683.1| - 7.4e-62 208.9 7.9 7.4e-62 208.9 7.9 4.7 4 1 0 4 4 4 2 Domain of unknown function (DUF3821) PGF-CTERM PF18204.1 gi|154150065|ref|YP_001403683.1| - 3.7e-06 26.7 4.3 3.7e-06 26.7 4.3 2.5 2 0 0 2 2 2 1 PGF-CTERM motif Ig_3 PF13927.6 gi|154150065|ref|YP_001403683.1| - 0.031 14.9 2.8 0.28 11.8 0.0 4.0 4 0 0 4 4 4 0 Immunoglobulin domain DUF3244 PF11589.8 gi|154150065|ref|YP_001403683.1| - 5.1 7.3 5.8 10 6.3 0.1 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF3244) Glycos_transf_3 PF00591.21 gi|154150066|ref|YP_001403684.1| - 1.7e-14 54.0 0.6 9.3e-11 41.8 0.2 2.4 2 0 0 2 2 2 2 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|154150066|ref|YP_001403684.1| - 5.1e-13 48.7 0.3 9.4e-13 47.8 0.3 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.13 gi|154150066|ref|YP_001403684.1| - 3.3e-12 45.9 0.0 2.5e-11 43.1 0.0 2.3 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Molydop_binding PF01568.21 gi|154150066|ref|YP_001403684.1| - 0.00021 21.3 0.0 0.00081 19.4 0.0 1.9 1 1 0 2 2 2 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.9 gi|154150066|ref|YP_001403684.1| - 0.0028 16.5 0.0 0.0043 15.9 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) CarboxypepD_reg PF13620.6 gi|154150067|ref|YP_001403685.1| - 2.8e-33 114.0 31.2 8.8e-11 41.9 0.8 5.2 5 0 0 5 5 5 5 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|154150067|ref|YP_001403685.1| - 1.1e-29 102.2 19.7 4.4e-08 33.0 0.2 5.1 2 2 3 5 5 5 5 CarboxypepD_reg-like domain PEGA PF08308.11 gi|154150067|ref|YP_001403685.1| - 4.5e-19 68.1 13.7 0.00097 19.0 0.0 5.7 5 1 0 5 5 5 5 PEGA domain fn3_3 PF14686.6 gi|154150067|ref|YP_001403685.1| - 3.1e-05 23.7 7.3 0.012 15.4 0.1 3.6 3 0 0 3 3 3 2 Polysaccharide lyase family 4, domain II SdrD_B PF17210.3 gi|154150067|ref|YP_001403685.1| - 0.00027 21.1 14.2 0.024 14.9 0.1 3.6 3 0 0 3 3 3 2 SdrD B-like domain BiPBP_C PF06832.12 gi|154150067|ref|YP_001403685.1| - 0.0021 18.1 0.0 18 5.5 0.0 3.6 2 1 1 3 3 3 0 Penicillin-Binding Protein C-terminus Family DUF2012 PF09430.10 gi|154150067|ref|YP_001403685.1| - 0.0036 17.4 1.6 0.11 12.6 0.1 2.9 3 1 0 3 3 3 1 Protein of unknown function (DUF2012) YtkA PF13115.6 gi|154150067|ref|YP_001403685.1| - 0.0064 17.1 0.1 0.28 11.8 0.0 2.9 2 0 0 2 2 2 1 YtkA-like Big_1 PF02369.16 gi|154150067|ref|YP_001403685.1| - 0.28 11.2 33.2 0.47 10.5 0.6 6.1 5 2 0 5 5 5 0 Bacterial Ig-like domain (group 1) SpaA PF17802.1 gi|154150067|ref|YP_001403685.1| - 0.85 10.0 15.0 2 8.8 6.5 3.6 2 1 0 2 2 2 0 Prealbumin-like fold domain DUF824 PF05688.11 gi|154150067|ref|YP_001403685.1| - 3.1 7.7 5.8 11 5.9 0.1 4.0 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) dUTPase PF00692.19 gi|154150068|ref|YP_001403686.1| - 1.4e-16 60.3 0.0 1.8e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|154150068|ref|YP_001403686.1| - 0.0056 15.5 0.1 0.038 12.8 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Arm-DNA-bind_2 PF12167.8 gi|154150068|ref|YP_001403686.1| - 0.14 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Arm DNA-binding domain NRD1_2 PF01995.16 gi|154150069|ref|YP_001403687.1| - 6.9e-82 274.3 0.0 8.4e-82 274.0 0.0 1.1 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|154150069|ref|YP_001403687.1| - 9.6e-16 57.5 0.0 2e-15 56.5 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Tubulin PF00091.25 gi|154150070|ref|YP_001403688.1| - 6.8e-07 29.7 0.0 1.3e-06 28.8 0.0 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|154150070|ref|YP_001403688.1| - 0.1 11.8 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 Tubulin like Bac_luciferase PF00296.20 gi|154150071|ref|YP_001403689.1| - 3.4e-50 171.3 0.0 4.1e-50 171.0 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF4931 PF16285.5 gi|154150072|ref|YP_001403690.1| - 0.021 14.1 0.0 0.078 12.3 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4931) MTD PF01993.18 gi|154150073|ref|YP_001403691.1| - 1.4e-116 388.6 4.0 1.6e-116 388.5 4.0 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase TFX_C PF14601.6 gi|154150074|ref|YP_001403692.1| - 1.7e-34 117.6 0.0 2.8e-34 116.9 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|154150074|ref|YP_001403692.1| - 4.2e-08 32.6 0.2 6.6e-08 32.0 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|154150074|ref|YP_001403692.1| - 4.3e-07 29.4 0.2 7.1e-07 28.7 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|154150074|ref|YP_001403692.1| - 0.0017 18.0 0.1 0.0053 16.4 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 LXG PF04740.12 gi|154150074|ref|YP_001403692.1| - 0.0036 17.0 0.4 0.005 16.6 0.4 1.1 1 0 0 1 1 1 1 LXG domain of WXG superfamily HTH_37 PF13744.6 gi|154150074|ref|YP_001403692.1| - 0.017 15.1 1.3 2.1 8.4 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|154150074|ref|YP_001403692.1| - 0.038 13.8 0.0 0.072 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|154150074|ref|YP_001403692.1| - 0.058 13.6 0.2 0.13 12.5 0.2 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MarR PF01047.22 gi|154150074|ref|YP_001403692.1| - 0.078 12.9 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|154150074|ref|YP_001403692.1| - 0.11 12.3 0.1 0.2 11.5 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Ribosomal_L3 PF00297.22 gi|154150075|ref|YP_001403693.1| - 5.4e-86 288.9 1.0 1.3e-85 287.6 1.0 1.6 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|154150076|ref|YP_001403694.1| - 1.6e-41 142.1 0.3 1.8e-41 142.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|154150077|ref|YP_001403695.1| - 1.6e-13 50.8 2.2 2.4e-13 50.2 2.2 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 YihI PF04220.12 gi|154150077|ref|YP_001403695.1| - 0.0045 16.7 0.1 0.0053 16.5 0.1 1.1 1 0 0 1 1 1 1 Der GTPase activator (YihI) DnaJ PF00226.31 gi|154150077|ref|YP_001403695.1| - 0.025 14.7 0.6 0.063 13.4 0.6 1.7 1 1 0 1 1 1 0 DnaJ domain TusA PF01206.17 gi|154150077|ref|YP_001403695.1| - 0.037 13.8 0.3 0.065 13.1 0.2 1.5 1 1 0 1 1 1 0 Sulfurtransferase TusA MatP PF06303.12 gi|154150077|ref|YP_001403695.1| - 0.061 13.9 0.2 0.074 13.6 0.2 1.1 1 0 0 1 1 1 0 MatP N-terminal domain Ubiquitin_4 PF18036.1 gi|154150077|ref|YP_001403695.1| - 0.063 13.3 0.6 0.076 13.1 0.6 1.3 1 1 0 1 1 1 0 Ubiquitin-like domain Ribosomal_L2_C PF03947.18 gi|154150078|ref|YP_001403696.1| - 8.4e-43 145.6 2.8 1.3e-42 144.9 2.8 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|154150078|ref|YP_001403696.1| - 9.5e-17 60.7 0.0 3.2e-16 59.0 0.0 2.0 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain DUF3084 PF11283.8 gi|154150078|ref|YP_001403696.1| - 0.014 15.4 0.3 0.027 14.4 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3084) Ribosomal_S19 PF00203.21 gi|154150079|ref|YP_001403697.1| - 1.2e-23 82.7 0.2 1.8e-23 82.2 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.19 gi|154150080|ref|YP_001403698.1| - 7e-24 84.0 0.2 8.5e-24 83.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|154150081|ref|YP_001403699.1| - 3e-22 78.9 1.1 3e-22 78.9 1.1 2.1 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|154150081|ref|YP_001403699.1| - 9.4e-13 47.8 0.1 1.8e-12 46.9 0.1 1.5 1 0 0 1 1 1 1 KH domain Ribosomal_L29 PF00831.23 gi|154150082|ref|YP_001403700.1| - 3.1e-13 49.5 0.1 3.5e-13 49.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein LEM PF03020.15 gi|154150082|ref|YP_001403700.1| - 0.014 14.9 0.2 0.042 13.4 0.2 1.9 1 1 0 1 1 1 0 LEM domain UPF0086 PF01868.16 gi|154150083|ref|YP_001403701.1| - 8.2e-21 73.7 0.0 9e-21 73.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|154150084|ref|YP_001403702.1| - 1.1e-26 92.7 1.8 1.4e-26 92.4 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|154150084|ref|YP_001403702.1| - 0.046 14.1 0.0 0.098 13.1 0.0 1.6 1 0 0 1 1 1 0 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|154150085|ref|YP_001403703.1| - 5e-36 123.5 1.0 5.6e-36 123.3 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e NHL PF01436.21 gi|154150085|ref|YP_001403703.1| - 0.015 15.3 0.0 0.032 14.3 0.0 1.6 1 0 0 1 1 1 0 NHL repeat 5-nucleotidase PF06189.12 gi|154150085|ref|YP_001403703.1| - 0.068 12.1 0.0 0.085 11.8 0.0 1.1 1 0 0 1 1 1 0 5'-nucleotidase Ribosomal_L26 PF16906.5 gi|154150086|ref|YP_001403704.1| - 4.1e-29 100.9 0.4 5.6e-29 100.4 0.4 1.2 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|154150086|ref|YP_001403704.1| - 8.6e-06 25.5 7.4 2.1e-05 24.3 7.4 1.7 1 0 0 1 1 1 1 KOW motif Ribosomal_S4e PF00900.20 gi|154150087|ref|YP_001403705.1| - 3.8e-23 81.2 0.2 7.6e-23 80.2 0.2 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|154150087|ref|YP_001403705.1| - 2.6e-13 49.8 0.2 9.7e-13 48.0 0.7 1.8 2 0 0 2 2 2 1 RS4NT (NUC023) domain S4 PF01479.25 gi|154150087|ref|YP_001403705.1| - 8.5e-07 28.6 0.1 1.8e-06 27.5 0.1 1.6 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|154150087|ref|YP_001403705.1| - 0.00042 20.2 0.1 0.00042 20.2 0.1 2.0 2 0 0 2 2 2 1 KOW motif Ribosomal_L5_C PF00673.21 gi|154150088|ref|YP_001403706.1| - 3.5e-27 94.4 0.1 5.7e-27 93.7 0.1 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|154150088|ref|YP_001403706.1| - 1.2e-15 57.6 0.8 2e-15 56.8 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 FctA PF12892.7 gi|154150088|ref|YP_001403706.1| - 0.025 15.4 0.0 0.031 15.1 0.0 1.3 1 0 0 1 1 1 0 Spy0128-like isopeptide containing domain Ribosomal_S14 PF00253.21 gi|154150089|ref|YP_001403707.1| - 6.7e-13 48.2 5.8 7.2e-13 48.1 5.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF1451 PF07295.11 gi|154150089|ref|YP_001403707.1| - 0.019 15.0 0.4 0.022 14.8 0.4 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Prok-RING_4 PF14447.6 gi|154150089|ref|YP_001403707.1| - 0.033 14.0 1.3 0.13 12.1 1.3 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 zf-RING_2 PF13639.6 gi|154150089|ref|YP_001403707.1| - 0.14 12.5 3.5 0.28 11.6 3.5 1.5 1 1 0 1 1 1 0 Ring finger domain zf-C3HC4_3 PF13920.6 gi|154150089|ref|YP_001403707.1| - 0.14 12.0 3.7 0.6 10.0 3.7 1.8 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) MRNIP PF15749.5 gi|154150089|ref|YP_001403707.1| - 0.16 12.7 3.5 0.2 12.4 3.5 1.3 1 1 0 1 1 1 0 MRN-interacting protein Ribosomal_S8 PF00410.19 gi|154150090|ref|YP_001403708.1| - 2.1e-26 92.3 0.0 2.5e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 YjcQ PF09639.10 gi|154150090|ref|YP_001403708.1| - 0.19 11.9 0.0 0.39 11.0 0.0 1.6 2 0 0 2 2 2 0 YjcQ protein Ribosomal_L6 PF00347.23 gi|154150091|ref|YP_001403709.1| - 1.3e-24 86.7 0.7 3.9e-13 49.9 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_L32e PF01655.18 gi|154150092|ref|YP_001403710.1| - 1.2e-32 112.5 0.1 1.2e-32 112.5 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein L32 SAPS PF04499.15 gi|154150092|ref|YP_001403710.1| - 1.9 7.2 7.7 2 7.1 7.7 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein HC2 PF07382.11 gi|154150092|ref|YP_001403710.1| - 8.1 6.5 62.8 13 5.8 62.8 1.3 1 0 0 1 1 1 0 Histone H1-like nucleoprotein HC2 CDC45 PF02724.14 gi|154150092|ref|YP_001403710.1| - 8.2 4.6 12.5 11 4.2 12.5 1.1 1 0 0 1 1 1 0 CDC45-like protein Ribosomal_L19e PF01280.20 gi|154150093|ref|YP_001403711.1| - 4e-57 192.3 6.5 4.8e-57 192.1 6.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Lant_dehydr_C PF14028.6 gi|154150093|ref|YP_001403711.1| - 0.035 13.6 0.1 0.035 13.6 0.1 1.1 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term Ribosomal_L5e PF17144.4 gi|154150094|ref|YP_001403712.1| - 2.5e-40 138.1 3.0 5.7e-27 94.7 1.3 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|154150094|ref|YP_001403712.1| - 1.5e-08 35.0 0.2 2.3e-08 34.4 0.2 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5 PF00333.20 gi|154150095|ref|YP_001403713.1| - 1.1e-24 86.2 2.3 2.5e-24 85.0 2.3 1.7 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|154150095|ref|YP_001403713.1| - 2.6e-23 81.2 0.1 5.8e-23 80.1 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|154150096|ref|YP_001403714.1| - 4.9e-17 61.6 0.4 8.8e-17 60.7 0.4 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|154150097|ref|YP_001403715.1| - 7.1e-18 65.5 1.5 9.4e-18 65.1 1.5 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|154150097|ref|YP_001403715.1| - 0.042 13.2 0.2 0.057 12.8 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein 60S L18 and 50S L18e SecY PF00344.20 gi|154150098|ref|YP_001403716.1| - 2.5e-69 233.9 23.3 3e-69 233.6 23.3 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|154150098|ref|YP_001403716.1| - 3.1e-10 39.7 1.3 1.1e-09 38.0 0.5 2.5 2 0 0 2 2 2 1 Plug domain of Sec61p AAA_17 PF13207.6 gi|154150099|ref|YP_001403717.1| - 2.2e-35 122.0 0.0 2.8e-35 121.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|154150099|ref|YP_001403717.1| - 1.2e-12 48.4 0.0 1.9e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|154150099|ref|YP_001403717.1| - 1e-06 28.8 0.0 1.5e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.6 gi|154150099|ref|YP_001403717.1| - 5.9e-06 26.8 0.0 6.9e-06 26.6 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|154150099|ref|YP_001403717.1| - 6e-05 23.2 0.1 0.00011 22.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|154150099|ref|YP_001403717.1| - 0.00012 21.8 0.1 0.23 11.1 0.0 2.3 2 1 0 2 2 2 2 Thymidylate kinase AAA_7 PF12775.7 gi|154150099|ref|YP_001403717.1| - 0.00023 20.7 0.1 0.00036 20.1 0.1 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|154150099|ref|YP_001403717.1| - 0.00038 20.8 0.6 0.00052 20.4 0.5 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|154150099|ref|YP_001403717.1| - 0.0007 19.9 0.1 0.0025 18.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|154150099|ref|YP_001403717.1| - 0.00071 19.9 0.1 0.0011 19.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|154150099|ref|YP_001403717.1| - 0.0023 17.2 0.1 0.0033 16.7 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) MeaB PF03308.16 gi|154150099|ref|YP_001403717.1| - 0.0023 16.9 0.1 0.0054 15.7 0.1 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Viral_helicase1 PF01443.18 gi|154150099|ref|YP_001403717.1| - 0.0026 17.6 0.0 0.0042 16.9 0.0 1.5 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA PF00004.29 gi|154150099|ref|YP_001403717.1| - 0.0057 17.1 0.2 0.0086 16.5 0.2 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|154150099|ref|YP_001403717.1| - 0.0063 16.5 0.1 0.057 13.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|154150099|ref|YP_001403717.1| - 0.0075 16.0 0.4 0.016 14.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain DAP3 PF10236.9 gi|154150099|ref|YP_001403717.1| - 0.0075 15.5 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 AAA_24 PF13479.6 gi|154150099|ref|YP_001403717.1| - 0.008 15.9 0.1 0.016 14.9 0.1 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|154150099|ref|YP_001403717.1| - 0.0089 15.6 0.1 0.022 14.3 0.1 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|154150099|ref|YP_001403717.1| - 0.011 15.7 0.1 0.024 14.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|154150099|ref|YP_001403717.1| - 0.014 15.4 0.0 0.031 14.2 0.0 1.8 1 1 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 gi|154150099|ref|YP_001403717.1| - 0.019 15.0 0.4 0.034 14.2 0.3 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|154150099|ref|YP_001403717.1| - 0.02 14.5 0.1 0.036 13.7 0.1 1.4 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain KTI12 PF08433.10 gi|154150099|ref|YP_001403717.1| - 0.024 14.1 0.0 0.039 13.4 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATPase_2 PF01637.18 gi|154150099|ref|YP_001403717.1| - 0.036 14.0 0.0 0.068 13.1 0.0 1.5 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea ATP_bind_1 PF03029.17 gi|154150099|ref|YP_001403717.1| - 0.037 13.8 0.1 0.11 12.2 0.1 1.8 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.22 gi|154150099|ref|YP_001403717.1| - 0.046 12.9 0.0 0.06 12.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain TIP49 PF06068.13 gi|154150099|ref|YP_001403717.1| - 0.058 12.6 0.0 0.074 12.2 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain RsgA_GTPase PF03193.16 gi|154150099|ref|YP_001403717.1| - 0.14 12.0 0.2 0.2 11.6 0.2 1.5 1 1 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|154150099|ref|YP_001403717.1| - 0.15 12.6 1.5 0.27 11.8 1.4 1.7 1 1 0 1 1 1 0 ABC transporter EMC3_TMCO1 PF01956.16 gi|154150100|ref|YP_001403718.1| - 1.9e-46 157.9 6.0 1.9e-46 157.9 6.0 1.6 2 0 0 2 2 2 1 Integral membrane protein EMC3/TMCO1-like EXS PF03124.14 gi|154150100|ref|YP_001403718.1| - 0.002 17.5 1.1 0.002 17.5 1.1 1.5 2 0 0 2 2 2 1 EXS family DUF2207 PF09972.9 gi|154150100|ref|YP_001403718.1| - 0.39 9.4 9.3 1.3 7.8 4.8 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Cytidylate_kin2 PF13189.6 gi|154150101|ref|YP_001403719.1| - 9.1e-20 71.5 0.5 3.3e-18 66.4 0.5 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|154150101|ref|YP_001403719.1| - 2.9e-12 47.2 0.0 3.7e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|154150101|ref|YP_001403719.1| - 1.5e-11 44.8 0.0 2.3e-11 44.2 0.0 1.3 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|154150101|ref|YP_001403719.1| - 6.2e-10 39.2 0.1 0.00011 22.0 0.0 2.2 1 1 1 2 2 2 2 Cytidylate kinase AAA_28 PF13521.6 gi|154150101|ref|YP_001403719.1| - 0.00027 21.2 0.1 0.00079 19.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain ADK PF00406.22 gi|154150101|ref|YP_001403719.1| - 0.0017 18.5 0.0 0.0041 17.2 0.0 1.6 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|154150101|ref|YP_001403719.1| - 0.033 14.4 0.0 0.042 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Sulfotransfer_3 PF13469.6 gi|154150101|ref|YP_001403719.1| - 0.066 13.6 0.0 0.074 13.4 0.0 1.4 1 1 0 1 1 1 0 Sulfotransferase family dNK PF01712.19 gi|154150101|ref|YP_001403719.1| - 0.086 12.7 0.5 2.6 7.8 0.0 2.1 1 1 1 2 2 2 0 Deoxynucleoside kinase PRK PF00485.18 gi|154150101|ref|YP_001403719.1| - 0.12 12.1 0.2 7 6.3 0.0 2.1 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family Acetyltransf_10 PF13673.7 gi|154150102|ref|YP_001403720.1| - 1.5e-07 31.4 0.0 1.9e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|154150102|ref|YP_001403720.1| - 2.9e-07 30.7 0.0 3.2e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|154150102|ref|YP_001403720.1| - 9.1e-07 29.2 0.0 1.2e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|154150102|ref|YP_001403720.1| - 0.002 18.2 0.0 0.0034 17.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|154150102|ref|YP_001403720.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.4 1 1 0 1 1 1 0 FR47-like protein DUF2156 PF09924.9 gi|154150103|ref|YP_001403721.1| - 2.7e-52 177.6 0.0 3.1e-52 177.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) MarC PF01914.17 gi|154150104|ref|YP_001403722.1| - 1.7e-32 112.5 22.0 2.1e-32 112.2 22.0 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein JAMP PF05571.12 gi|154150104|ref|YP_001403722.1| - 6.2 6.4 8.8 0.71 9.5 3.0 1.9 2 0 0 2 2 2 0 JNK1/MAPK8-associated membrane protein Rubredoxin PF00301.20 gi|154150105|ref|YP_001403723.1| - 1.2e-40 137.2 12.2 3.3e-20 71.9 3.2 2.5 2 0 0 2 2 2 2 Rubredoxin Zn_ribbon_SprT PF17283.2 gi|154150105|ref|YP_001403723.1| - 0.00017 21.4 8.3 0.057 13.3 1.1 3.3 3 0 0 3 3 3 1 SprT-like zinc ribbon domain DZR PF12773.7 gi|154150105|ref|YP_001403723.1| - 0.0017 18.3 1.0 1 9.4 1.0 3.3 1 1 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|154150105|ref|YP_001403723.1| - 0.002 18.0 7.1 4.3 7.4 0.1 4.0 4 0 0 4 4 4 1 Nudix N-terminal zinc_ribbon_10 PF10058.9 gi|154150105|ref|YP_001403723.1| - 0.0025 17.5 5.7 3.7 7.3 0.1 4.1 4 0 0 4 4 4 1 Predicted integral membrane zinc-ribbon metal-binding protein PHD_4 PF16866.5 gi|154150105|ref|YP_001403723.1| - 0.0046 17.0 0.8 0.013 15.6 0.2 2.2 1 1 1 2 2 2 1 PHD-finger zf-H2C2_2 PF13465.6 gi|154150105|ref|YP_001403723.1| - 0.005 17.2 12.1 7 7.3 0.4 4.3 4 0 0 4 4 4 0 Zinc-finger double domain zf-Di19 PF05605.12 gi|154150105|ref|YP_001403723.1| - 0.0055 17.0 0.9 13 6.2 0.1 3.3 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.10 gi|154150105|ref|YP_001403723.1| - 0.007 16.5 11.9 0.65 10.2 2.5 3.8 2 2 0 2 2 2 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|154150105|ref|YP_001403723.1| - 0.0083 15.6 10.5 4.5 6.9 0.2 4.1 4 0 0 4 4 4 2 TFIIB zinc-binding HypA PF01155.19 gi|154150105|ref|YP_001403723.1| - 0.011 15.7 0.3 2.9 8.0 0.1 2.4 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Elf1 PF05129.13 gi|154150105|ref|YP_001403723.1| - 0.028 14.5 5.2 1.5 8.9 0.1 3.8 2 1 1 3 3 3 0 Transcription elongation factor Elf1 like Tnp_zf-ribbon_2 PF13842.6 gi|154150105|ref|YP_001403723.1| - 0.034 14.9 3.9 0.55 11.1 0.0 3.0 3 0 0 3 3 3 0 DDE_Tnp_1-like zinc-ribbon Zn_Tnp_IS1595 PF12760.7 gi|154150105|ref|YP_001403723.1| - 0.038 14.0 8.1 0.14 12.1 0.5 3.1 3 0 0 3 3 3 0 Transposase zinc-ribbon domain DUF5318 PF17249.2 gi|154150105|ref|YP_001403723.1| - 0.039 13.7 0.0 0.97 9.2 0.0 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5318) zf-CCHC_2 PF13696.6 gi|154150105|ref|YP_001403723.1| - 0.047 13.5 22.9 1.6 8.6 0.8 4.3 4 0 0 4 4 4 0 Zinc knuckle C1_2 PF03107.16 gi|154150105|ref|YP_001403723.1| - 0.051 13.9 10.4 0.48 10.8 2.1 3.7 3 1 0 3 3 3 0 C1 domain UPF0547 PF10571.9 gi|154150105|ref|YP_001403723.1| - 0.066 13.3 19.4 1.8 8.7 0.2 4.4 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-HIT PF04438.16 gi|154150105|ref|YP_001403723.1| - 0.24 11.3 15.1 17 5.4 0.1 4.2 4 0 0 4 4 4 0 HIT zinc finger zf-Mss51 PF13824.6 gi|154150105|ref|YP_001403723.1| - 0.26 11.4 8.7 29 4.9 0.3 4.0 3 1 1 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_3 PF13878.6 gi|154150105|ref|YP_001403723.1| - 0.29 11.0 5.8 6.6 6.6 0.1 3.7 4 0 0 4 4 4 0 zinc-finger of acetyl-transferase ESCO OrfB_Zn_ribbon PF07282.11 gi|154150105|ref|YP_001403723.1| - 0.4 10.6 5.2 2.4 8.2 0.5 3.4 2 1 1 3 3 3 0 Putative transposase DNA-binding domain zf-C2H2_3rep PF18868.1 gi|154150105|ref|YP_001403723.1| - 0.52 11.0 1.5 7.4 7.3 0.0 2.8 4 0 0 4 4 2 0 Zinc finger C2H2-type, 3 repeats zf-C2H2_4 PF13894.6 gi|154150105|ref|YP_001403723.1| - 0.55 11.2 12.8 20 6.4 0.1 4.2 4 0 0 4 4 4 0 C2H2-type zinc finger Rubredoxin_2 PF18073.1 gi|154150105|ref|YP_001403723.1| - 0.6 9.9 18.1 1.9 8.3 0.3 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain zf-nanos PF05741.13 gi|154150105|ref|YP_001403723.1| - 0.64 10.3 8.8 24 5.3 0.1 4.0 4 0 0 4 4 4 0 Nanos RNA binding domain Marek_A PF02124.15 gi|154150105|ref|YP_001403723.1| - 0.65 9.8 1.9 27 4.5 0.0 2.6 3 0 0 3 3 3 0 Marek's disease glycoprotein A Rad50_zn_hook PF04423.14 gi|154150105|ref|YP_001403723.1| - 0.86 9.5 3.1 17 5.3 0.1 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-BED PF02892.15 gi|154150105|ref|YP_001403723.1| - 1 9.4 3.9 10 6.2 0.1 2.6 3 0 0 3 3 2 0 BED zinc finger ADK_lid PF05191.14 gi|154150105|ref|YP_001403723.1| - 1.9 8.5 11.1 6.6 6.8 1.8 2.7 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-C2H2 PF00096.26 gi|154150105|ref|YP_001403723.1| - 3.8 8.2 16.2 21 5.8 0.2 4.2 4 0 0 4 4 4 0 Zinc finger, C2H2 type Desulfoferrod_N PF06397.12 gi|154150105|ref|YP_001403723.1| - 3.8 7.2 15.1 3.6 7.3 0.6 4.1 4 0 0 4 4 4 0 Desulfoferrodoxin, N-terminal domain FYVE PF01363.21 gi|154150105|ref|YP_001403723.1| - 7.8 6.7 6.7 2.4e+02 2.0 6.7 2.8 1 1 0 1 1 1 0 FYVE zinc finger TPR_1 PF00515.28 gi|154150107|ref|YP_001403725.1| - 6.5e-40 133.4 7.1 3.8e-09 36.0 0.0 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154150107|ref|YP_001403725.1| - 4.3e-36 120.1 13.9 2.2e-08 33.6 0.0 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154150107|ref|YP_001403725.1| - 4.4e-32 107.6 3.1 3e-06 27.0 0.0 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154150107|ref|YP_001403725.1| - 2.3e-30 104.0 6.6 6e-08 32.2 0.2 5.4 1 1 4 5 5 5 5 TPR repeat TPR_16 PF13432.6 gi|154150107|ref|YP_001403725.1| - 2.4e-25 88.9 9.0 3.8e-10 40.2 2.7 3.9 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154150107|ref|YP_001403725.1| - 7.2e-24 82.4 14.3 0.00015 22.3 0.1 6.0 2 1 4 6 6 6 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|154150107|ref|YP_001403725.1| - 1.9e-23 81.1 6.1 0.00037 20.7 0.0 5.5 6 0 0 6 6 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154150107|ref|YP_001403725.1| - 1.6e-22 79.5 17.4 2.5e-10 40.5 0.5 4.8 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154150107|ref|YP_001403725.1| - 2.3e-20 72.8 3.4 1.5e-07 31.8 0.1 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154150107|ref|YP_001403725.1| - 1.8e-18 65.1 11.8 0.00029 20.7 0.0 6.1 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154150107|ref|YP_001403725.1| - 8.5e-18 64.3 9.5 2.4e-08 34.0 0.2 4.0 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|154150107|ref|YP_001403725.1| - 1.6e-12 46.8 22.2 0.044 13.7 0.3 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|154150107|ref|YP_001403725.1| - 8.8e-12 45.1 0.6 7.5e-06 26.1 0.2 2.3 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|154150107|ref|YP_001403725.1| - 6.3e-11 42.2 10.4 0.017 15.7 0.0 6.0 6 0 0 6 6 6 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|154150107|ref|YP_001403725.1| - 5e-10 39.6 4.0 0.22 11.6 0.0 5.8 1 1 4 5 5 5 3 Domain of Unknown Function (DUF3856) Fis1_TPR_C PF14853.6 gi|154150107|ref|YP_001403725.1| - 6.4e-10 39.0 1.9 0.041 13.9 0.1 4.4 3 1 1 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.17 gi|154150107|ref|YP_001403725.1| - 9.5e-10 39.1 10.4 9.7e-05 22.8 2.7 3.3 1 1 1 2 2 2 2 Bacterial transcriptional activator domain TPR_4 PF07721.14 gi|154150107|ref|YP_001403725.1| - 2e-09 37.2 21.2 0.0072 16.8 0.1 5.9 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|154150107|ref|YP_001403725.1| - 1.3e-08 34.4 3.2 9.7e-07 28.3 0.5 2.6 1 1 1 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|154150107|ref|YP_001403725.1| - 9.6e-08 31.4 0.0 0.033 13.1 0.0 3.2 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|154150107|ref|YP_001403725.1| - 5.1e-06 26.5 0.0 0.03 14.3 0.1 3.5 1 1 2 3 3 3 1 Putative TPR-like repeat NRBF2_MIT PF17169.4 gi|154150107|ref|YP_001403725.1| - 0.00019 21.6 2.9 8.1 6.7 0.0 4.1 1 1 2 4 4 4 0 MIT domain of nuclear receptor-binding factor 2 DUF5113 PF17140.4 gi|154150107|ref|YP_001403725.1| - 0.00036 20.4 2.4 14 5.5 0.0 4.7 1 1 4 5 5 5 0 Domain of unknown function (DUF5113) TPR_5 PF12688.7 gi|154150107|ref|YP_001403725.1| - 0.002 18.4 6.7 0.21 11.8 0.1 4.2 1 1 2 4 4 4 1 Tetratrico peptide repeat Alkyl_sulf_dimr PF14863.6 gi|154150107|ref|YP_001403725.1| - 0.0048 17.3 0.5 0.64 10.5 0.1 2.9 2 1 0 2 2 2 1 Alkyl sulfatase dimerisation TPR_21 PF09976.9 gi|154150107|ref|YP_001403725.1| - 0.0057 16.4 0.9 0.089 12.5 0.2 2.6 2 1 0 2 2 2 1 Tetratricopeptide repeat-like domain HEAT_2 PF13646.6 gi|154150107|ref|YP_001403725.1| - 0.0067 16.8 0.3 0.48 10.8 0.0 2.8 2 1 0 2 2 2 1 HEAT repeats RPN7 PF10602.9 gi|154150107|ref|YP_001403725.1| - 0.0086 15.8 3.4 20 4.8 0.1 3.9 1 1 2 3 3 3 0 26S proteasome subunit RPN7 SHNi-TPR PF10516.9 gi|154150107|ref|YP_001403725.1| - 0.022 14.2 0.1 2.6 7.6 0.0 3.6 4 0 0 4 4 4 0 SHNi-TPR HTH_38 PF13936.6 gi|154150107|ref|YP_001403725.1| - 0.035 13.9 0.8 0.18 11.6 0.0 2.6 3 0 0 3 3 2 0 Helix-turn-helix domain TPR_20 PF14561.6 gi|154150107|ref|YP_001403725.1| - 0.11 12.8 2.0 9.1 6.7 0.0 3.2 2 1 1 4 4 3 0 Tetratricopeptide repeat DUF4886 PF16227.5 gi|154150107|ref|YP_001403725.1| - 0.13 11.5 0.0 20 4.3 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4886) PvlArgDC PF01862.16 gi|154150107|ref|YP_001403725.1| - 0.21 11.4 2.3 12 5.7 0.0 3.5 5 0 0 5 5 5 0 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) MIT PF04212.18 gi|154150107|ref|YP_001403725.1| - 2.1 8.5 8.4 11 6.1 0.6 4.2 4 2 0 5 5 5 0 MIT (microtubule interacting and transport) domain Lipocalin_4 PF13648.6 gi|154150108|ref|YP_001403726.1| - 0.0018 19.2 0.6 0.0021 19.0 0.6 1.2 1 0 0 1 1 1 1 Lipocalin-like domain MtrH PF02007.18 gi|154150109|ref|YP_001403727.1| - 5.4e-97 324.5 0.0 9.6e-97 323.7 0.0 1.4 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrA PF04208.14 gi|154150110|ref|YP_001403728.1| - 2e-82 275.0 0.6 3.1e-82 274.4 0.6 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrG PF04210.13 gi|154150110|ref|YP_001403728.1| - 4.9e-23 80.8 3.1 1.3e-22 79.4 0.4 2.2 2 0 0 2 2 2 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF3040 PF11239.8 gi|154150110|ref|YP_001403728.1| - 0.034 14.4 0.4 0.076 13.3 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Sugarporin_N PF11471.8 gi|154150110|ref|YP_001403728.1| - 0.056 13.4 0.2 0.13 12.3 0.2 1.6 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension KxDL PF10241.9 gi|154150110|ref|YP_001403728.1| - 0.19 12.0 0.2 7.1 7.0 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein MtrF PF09472.10 gi|154150111|ref|YP_001403729.1| - 9.4e-20 69.8 0.8 1.1e-19 69.6 0.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.14 gi|154150112|ref|YP_001403730.1| - 1.2e-82 275.7 0.6 1.7e-82 275.2 0.6 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|154150112|ref|YP_001403730.1| - 0.002 17.5 4.0 0.011 15.1 4.0 2.1 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF4765 PF15962.5 gi|154150112|ref|YP_001403730.1| - 0.23 9.4 0.0 0.32 8.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4765) MtrB PF05440.12 gi|154150113|ref|YP_001403731.1| - 2.8e-30 104.6 0.1 3.2e-30 104.4 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B LAT PF15234.6 gi|154150113|ref|YP_001403731.1| - 0.12 12.1 0.0 0.14 11.9 0.0 1.0 1 0 0 1 1 1 0 Linker for activation of T-cells MtrC PF04211.13 gi|154150114|ref|YP_001403732.1| - 4.7e-69 232.4 30.6 1.8e-68 230.5 30.6 1.7 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C HTH_17 PF12728.7 gi|154150114|ref|YP_001403732.1| - 0.067 13.4 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Vpu PF00558.19 gi|154150114|ref|YP_001403732.1| - 0.07 12.9 3.6 1.1 9.1 0.1 2.7 2 0 0 2 2 2 0 Vpu protein SLATT_3 PF18184.1 gi|154150114|ref|YP_001403732.1| - 4.8 7.3 7.4 0.9 9.7 0.3 2.5 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 MtrD PF04207.12 gi|154150115|ref|YP_001403733.1| - 6.6e-94 313.7 27.5 1.1e-93 313.0 27.5 1.3 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrE PF04206.12 gi|154150116|ref|YP_001403734.1| - 1.2e-132 441.3 11.3 1.4e-132 441.1 11.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E HD PF01966.22 gi|154150118|ref|YP_001403736.1| - 1.3e-11 44.7 0.3 2.9e-11 43.6 0.3 1.7 1 0 0 1 1 1 1 HD domain DUF4292 PF14125.6 gi|154150118|ref|YP_001403736.1| - 0.055 13.1 0.2 0.38 10.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4292) DUF5370 PF17340.2 gi|154150119|ref|YP_001403737.1| - 0.11 12.4 0.4 0.23 11.4 0.1 1.8 2 1 0 2 2 2 0 Family of unknown function (DUF5370) Glyoxalase PF00903.25 gi|154150121|ref|YP_001403739.1| - 4.2e-06 27.0 0.0 7.9e-06 26.1 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|154150121|ref|YP_001403739.1| - 2.5e-05 25.0 0.0 3e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain ABM PF03992.16 gi|154150122|ref|YP_001403740.1| - 3.1e-06 27.2 0.0 5e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF3054 PF11255.8 gi|154150122|ref|YP_001403740.1| - 0.032 14.7 1.1 0.047 14.2 1.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3054) SOR PF07682.11 gi|154150122|ref|YP_001403740.1| - 0.065 12.1 0.0 0.099 11.5 0.0 1.3 1 0 0 1 1 1 0 Sulphur oxygenase reductase Radical_SAM PF04055.21 gi|154150123|ref|YP_001403741.1| - 4.1e-11 43.5 0.3 6.4e-11 42.9 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|154150123|ref|YP_001403741.1| - 9.7e-07 29.2 0.0 2.2e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|154150123|ref|YP_001403741.1| - 0.0012 19.1 0.0 0.0022 18.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|154150123|ref|YP_001403741.1| - 0.019 15.1 0.0 0.034 14.3 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF169 PF02596.15 gi|154150124|ref|YP_001403742.1| - 2.4e-62 210.5 0.0 2.7e-62 210.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 MCR_alpha_N PF02745.15 gi|154150125|ref|YP_001403743.1| - 2.7e-150 499.1 0.2 3.5e-150 498.8 0.2 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|154150125|ref|YP_001403743.1| - 3.9e-67 224.5 3.8 9.1e-67 223.3 3.8 1.7 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_gamma PF02240.16 gi|154150126|ref|YP_001403744.1| - 2.3e-133 443.0 0.1 2.6e-133 442.8 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.12 gi|154150127|ref|YP_001403745.1| - 5.4e-05 22.4 2.5 0.00071 18.7 2.5 2.4 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.14 gi|154150128|ref|YP_001403746.1| - 1.1e-54 184.1 0.0 1.2e-54 184.0 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.18 gi|154150129|ref|YP_001403747.1| - 2.8e-133 443.1 5.3 4.8e-133 442.4 5.3 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|154150129|ref|YP_001403747.1| - 1.2e-83 279.3 3.1 2e-83 278.5 3.1 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain FlpD PF02662.16 gi|154150130|ref|YP_001403748.1| - 1.4e-49 167.1 0.0 1.6e-49 167.0 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.14 gi|154150131|ref|YP_001403749.1| - 5.1e-15 55.5 0.0 2.7e-14 53.1 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|154150131|ref|YP_001403749.1| - 5.3e-14 51.4 39.3 2.7e-05 23.8 2.5 4.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154150131|ref|YP_001403749.1| - 1.3e-13 51.3 26.3 2e-07 31.5 10.0 3.2 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154150131|ref|YP_001403749.1| - 2.8e-13 49.8 28.4 1.2e-08 35.0 8.8 3.9 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150131|ref|YP_001403749.1| - 8.9e-12 45.0 27.7 2.1e-07 31.0 8.5 3.2 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150131|ref|YP_001403749.1| - 4.8e-10 39.4 26.2 0.0043 17.1 12.3 4.1 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154150131|ref|YP_001403749.1| - 2.1e-09 38.2 19.0 0.026 15.5 0.7 4.7 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|154150131|ref|YP_001403749.1| - 1.6e-07 31.0 40.6 0.0055 16.7 1.9 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154150131|ref|YP_001403749.1| - 6.3e-07 29.2 34.7 0.0028 17.7 2.8 4.8 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|154150131|ref|YP_001403749.1| - 2e-06 28.2 25.1 0.013 15.9 10.8 4.0 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154150131|ref|YP_001403749.1| - 8.6e-06 26.2 29.8 9.8e-06 26.0 3.0 4.2 3 1 2 5 5 4 2 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|154150131|ref|YP_001403749.1| - 1.8e-05 24.3 0.6 3.9e-05 23.2 0.6 1.5 2 0 0 2 2 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|154150131|ref|YP_001403749.1| - 0.00021 21.5 0.1 0.00021 21.5 0.1 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|154150131|ref|YP_001403749.1| - 0.00023 20.4 0.1 0.00042 19.5 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|154150131|ref|YP_001403749.1| - 0.00028 20.2 0.0 0.0007 18.9 0.0 1.6 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|154150131|ref|YP_001403749.1| - 0.00034 19.8 0.0 0.00052 19.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Fer4_22 PF17179.4 gi|154150131|ref|YP_001403749.1| - 0.00049 20.9 22.3 0.79 10.6 0.4 4.6 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150131|ref|YP_001403749.1| - 0.017 15.6 1.3 0.017 15.6 1.3 5.5 6 0 0 6 6 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|154150131|ref|YP_001403749.1| - 0.029 14.9 24.7 0.53 10.9 1.6 4.8 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I FAD_binding_3 PF01494.19 gi|154150131|ref|YP_001403749.1| - 0.031 13.5 0.5 0.062 12.5 0.5 1.4 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.27 gi|154150131|ref|YP_001403749.1| - 0.063 13.8 0.7 0.27 11.8 0.7 2.2 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|154150131|ref|YP_001403749.1| - 0.08 12.2 0.1 0.26 10.5 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|154150131|ref|YP_001403749.1| - 0.18 10.5 1.7 0.27 9.9 1.7 1.3 1 0 0 1 1 1 0 HI0933-like protein DUF116 PF01976.17 gi|154150131|ref|YP_001403749.1| - 0.72 9.3 0.0 0.72 9.3 0.0 4.1 4 1 1 5 5 4 0 Protein of unknown function DUF116 Fer4_18 PF13746.6 gi|154150131|ref|YP_001403749.1| - 8 6.7 22.8 11 6.2 0.4 4.5 4 1 0 4 4 4 0 4Fe-4S dicluster domain DAO PF01266.24 gi|154150131|ref|YP_001403749.1| - 8.9 5.8 11.9 0.12 12.0 0.6 2.8 3 1 1 4 4 3 0 FAD dependent oxidoreductase CCG PF02754.16 gi|154150132|ref|YP_001403750.1| - 7.3e-30 103.0 2.0 1.3e-16 60.5 0.1 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|154150133|ref|YP_001403751.1| - 7.6e-10 39.1 18.0 2.4e-09 37.5 7.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150133|ref|YP_001403751.1| - 6.2e-09 35.9 17.6 2.8e-08 33.8 7.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154150133|ref|YP_001403751.1| - 7.8e-08 32.8 6.3 1.5e-07 31.8 6.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150133|ref|YP_001403751.1| - 4.3e-06 26.7 8.7 1.5e-05 25.0 9.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154150133|ref|YP_001403751.1| - 8.7e-06 26.6 2.0 0.14 13.1 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|154150133|ref|YP_001403751.1| - 0.00018 22.1 10.5 0.00077 20.0 10.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150133|ref|YP_001403751.1| - 0.00089 19.6 10.4 0.21 12.1 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|154150133|ref|YP_001403751.1| - 0.011 15.6 11.7 0.22 11.4 1.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|154150133|ref|YP_001403751.1| - 0.013 15.6 14.5 0.42 10.8 4.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154150133|ref|YP_001403751.1| - 0.061 13.5 7.8 0.28 11.4 7.8 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|154150133|ref|YP_001403751.1| - 0.3 12.1 14.5 0.39 11.8 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|154150133|ref|YP_001403751.1| - 0.78 10.6 10.0 4.8 8.1 3.1 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|154150133|ref|YP_001403751.1| - 0.84 9.9 7.0 2.1 8.6 0.4 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|154150134|ref|YP_001403752.1| - 1.7e-42 141.5 93.5 1.1e-07 31.3 3.9 8.5 8 1 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154150134|ref|YP_001403752.1| - 8.9e-33 112.7 69.6 2.5e-10 40.8 8.0 5.1 3 1 2 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150134|ref|YP_001403752.1| - 2.5e-26 91.5 72.0 1.3e-07 31.6 9.5 6.2 3 2 5 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154150134|ref|YP_001403752.1| - 8.5e-26 88.9 88.3 5.6e-05 23.0 3.9 8.2 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154150134|ref|YP_001403752.1| - 9.6e-26 90.5 66.5 7.7e-07 30.0 9.5 7.2 4 2 3 7 7 7 7 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|154150134|ref|YP_001403752.1| - 3.4e-25 87.9 70.3 1.6e-07 31.4 8.3 5.8 2 2 6 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154150134|ref|YP_001403752.1| - 3.3e-23 81.6 73.8 9.1e-06 25.7 11.0 7.2 5 3 3 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154150134|ref|YP_001403752.1| - 3.2e-22 77.2 80.3 1.2e-05 25.2 2.7 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_8 PF13183.6 gi|154150134|ref|YP_001403752.1| - 3.9e-17 62.4 57.1 0.00014 22.3 12.1 6.3 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154150134|ref|YP_001403752.1| - 1.1e-13 51.4 64.3 0.0001 22.8 8.1 6.4 3 1 3 6 6 6 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150134|ref|YP_001403752.1| - 1.1e-08 34.9 79.2 0.00036 20.8 1.0 8.3 8 0 0 8 8 7 6 4Fe-4S binding domain Fer4_13 PF13370.6 gi|154150134|ref|YP_001403752.1| - 2.3e-07 31.2 83.2 0.025 15.1 16.0 8.3 7 1 0 7 7 7 5 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|154150134|ref|YP_001403752.1| - 0.00011 22.9 70.0 0.032 15.0 14.2 8.6 4 2 1 5 5 4 3 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|154150134|ref|YP_001403752.1| - 0.0066 17.3 16.1 0.0091 16.9 3.4 8.5 8 0 0 8 8 8 3 4Fe-4S binding domain Fer4_22 PF17179.4 gi|154150134|ref|YP_001403752.1| - 0.035 15.0 0.2 0.035 15.0 0.2 8.1 4 2 5 9 9 8 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|154150135|ref|YP_001403753.1| - 4.4e-08 32.6 8.0 0.00024 20.8 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154150135|ref|YP_001403753.1| - 2e-07 31.5 8.3 3.5e-06 27.5 9.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154150135|ref|YP_001403753.1| - 2.1e-06 28.6 7.2 0.0075 17.2 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|154150135|ref|YP_001403753.1| - 0.00084 20.1 15.1 0.007 17.2 3.1 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154150135|ref|YP_001403753.1| - 0.0013 18.8 7.4 0.035 14.3 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150135|ref|YP_001403753.1| - 0.0017 18.5 10.1 0.041 14.1 10.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154150135|ref|YP_001403753.1| - 0.0042 17.6 3.5 0.48 11.0 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150135|ref|YP_001403753.1| - 0.0062 16.6 11.2 0.32 11.2 12.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154150135|ref|YP_001403753.1| - 0.01 15.9 1.7 0.01 15.9 1.7 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|154150135|ref|YP_001403753.1| - 0.018 15.5 4.8 1.1 9.7 0.6 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150135|ref|YP_001403753.1| - 0.16 12.5 9.6 1.9 9.2 0.8 2.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|154150135|ref|YP_001403753.1| - 0.81 9.9 18.5 1.2 9.4 4.5 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain FTR_C PF02741.15 gi|154150136|ref|YP_001403754.1| - 2.9e-66 222.1 3.6 2.9e-66 222.1 3.6 1.7 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.18 gi|154150136|ref|YP_001403754.1| - 3.5e-63 211.8 0.2 6.9e-63 210.8 0.2 1.5 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase DUF1743 PF08489.11 gi|154150137|ref|YP_001403755.1| - 0.012 15.7 1.8 1.1 9.3 0.0 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF1743) DUF1743 PF08489.11 gi|154150138|ref|YP_001403756.1| - 4.5e-09 36.4 0.3 2.9e-06 27.3 0.1 3.3 2 1 0 2 2 2 1 Domain of unknown function (DUF1743) Evr1_Alr PF04777.13 gi|154150138|ref|YP_001403756.1| - 0.058 13.9 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 Erv1 / Alr family AtuA PF07287.11 gi|154150138|ref|YP_001403756.1| - 0.12 11.1 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 Acyclic terpene utilisation family protein AtuA Radical_SAM PF04055.21 gi|154150139|ref|YP_001403757.1| - 4.6e-15 56.4 0.1 6.9e-15 55.8 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily TPP_enzyme_C PF02775.21 gi|154150140|ref|YP_001403758.1| - 1.2e-09 38.2 0.0 2.2e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|154150140|ref|YP_001403758.1| - 0.0056 16.3 0.7 0.054 13.1 0.2 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HMGL-like PF00682.19 gi|154150141|ref|YP_001403759.1| - 3.3e-79 266.2 1.0 4.8e-79 265.6 1.0 1.3 1 0 0 1 1 1 1 HMGL-like Aconitase PF00330.20 gi|154150142|ref|YP_001403760.1| - 4e-85 286.5 5.6 1.5e-82 278.1 5.6 2.5 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|154150142|ref|YP_001403760.1| - 0.064 12.0 0.0 0.1 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Aconitase_C PF00694.19 gi|154150143|ref|YP_001403761.1| - 3.3e-19 69.5 0.0 4e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain PepSY_like PF11396.8 gi|154150143|ref|YP_001403761.1| - 0.17 12.4 0.0 0.26 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative beta-lactamase-inhibitor-like, PepSY-like Iso_dh PF00180.20 gi|154150145|ref|YP_001403763.1| - 4.7e-90 302.2 0.0 2.4e-89 299.9 0.0 1.8 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase HEPN_SAV_6107 PF18726.1 gi|154150145|ref|YP_001403763.1| - 0.18 12.4 0.5 15 6.2 0.1 2.4 2 0 0 2 2 2 0 SAV_6107-like HEPN YdjM PF04307.14 gi|154150146|ref|YP_001403764.1| - 6.4e-11 41.9 4.3 1.3e-09 37.6 4.3 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|154150146|ref|YP_001403764.1| - 0.0067 16.4 0.0 0.0093 16.0 0.0 1.1 1 0 0 1 1 1 1 Zinc dependent phospholipase C CxxCxxCC PF03692.15 gi|154150147|ref|YP_001403765.1| - 7.2e-06 26.6 6.4 1.4e-05 25.7 6.4 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF2179 PF10035.9 gi|154150148|ref|YP_001403766.1| - 1.6e-10 40.5 0.0 5.3e-10 38.9 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2179) CdAMP_rec PF06153.11 gi|154150148|ref|YP_001403766.1| - 0.018 15.3 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 Cyclic-di-AMP receptor SelR PF01641.18 gi|154150149|ref|YP_001403767.1| - 1.4e-53 180.1 0.2 1.8e-53 179.8 0.2 1.1 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 gi|154150149|ref|YP_001403767.1| - 0.0016 18.7 0.1 0.0027 17.9 0.1 1.4 1 0 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly HECT_2 PF09814.9 gi|154150149|ref|YP_001403767.1| - 0.62 8.9 2.5 5.8 5.7 0.1 2.0 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Mntp PF02659.15 gi|154150150|ref|YP_001403768.1| - 1e-41 142.2 15.6 1e-41 142.2 15.6 2.0 1 1 1 2 2 2 2 Putative manganese efflux pump DUF3165 PF11364.8 gi|154150150|ref|YP_001403768.1| - 0.55 10.6 4.7 0.15 12.5 1.1 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3165) Ribonucleas_3_3 PF14622.6 gi|154150151|ref|YP_001403769.1| - 2.9e-22 79.2 0.0 4.1e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 gi|154150151|ref|YP_001403769.1| - 4.8e-15 56.1 0.2 1e-14 55.0 0.0 1.6 2 0 0 2 2 2 1 Ribonuclease III domain CorA PF01544.18 gi|154150152|ref|YP_001403770.1| - 3.5e-43 148.0 2.5 4.5e-43 147.6 2.5 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein AhpC-TSA PF00578.21 gi|154150153|ref|YP_001403771.1| - 1.8e-26 92.5 0.0 2.1e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|154150153|ref|YP_001403771.1| - 2e-18 66.5 0.0 2.4e-18 66.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.6 gi|154150153|ref|YP_001403771.1| - 0.021 15.2 0.0 0.052 14.0 0.0 1.8 1 1 0 1 1 1 0 Thioredoxin-like domain PAD_porph PF04371.15 gi|154150155|ref|YP_001403773.1| - 2.7e-121 404.8 0.0 3.9e-121 404.2 0.0 1.3 1 0 0 1 1 1 1 Porphyromonas-type peptidyl-arginine deiminase CN_hydrolase PF00795.22 gi|154150155|ref|YP_001403773.1| - 5.1e-50 170.2 0.0 7.7e-50 169.7 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase ABC2_membrane_3 PF12698.7 gi|154150156|ref|YP_001403774.1| - 3.4e-36 125.1 22.0 4.2e-36 124.8 22.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|154150156|ref|YP_001403774.1| - 3.1e-27 95.4 23.3 5.1e-25 88.1 13.2 2.4 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|154150156|ref|YP_001403774.1| - 5.6e-10 39.0 12.0 7.3e-10 38.6 12.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|154150157|ref|YP_001403775.1| - 6e-30 104.5 0.0 9.6e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154150157|ref|YP_001403775.1| - 2.5e-15 57.1 0.2 4.4e-09 36.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|154150157|ref|YP_001403775.1| - 9.9e-06 26.2 0.2 4.4e-05 24.1 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|154150157|ref|YP_001403775.1| - 1.4e-05 24.7 0.1 3.5e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|154150157|ref|YP_001403775.1| - 1.6e-05 24.8 0.3 0.039 13.7 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|154150157|ref|YP_001403775.1| - 0.0022 18.5 0.1 0.0035 17.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|154150157|ref|YP_001403775.1| - 0.0094 15.9 0.1 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|154150157|ref|YP_001403775.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 gi|154150157|ref|YP_001403775.1| - 0.011 16.1 0.0 0.025 15.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|154150157|ref|YP_001403775.1| - 0.013 15.6 0.0 0.024 14.7 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|154150157|ref|YP_001403775.1| - 0.097 12.1 0.1 5.4 6.4 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MeaB PF03308.16 gi|154150157|ref|YP_001403775.1| - 0.1 11.5 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Mg_chelatase PF01078.21 gi|154150157|ref|YP_001403775.1| - 0.11 11.9 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MarR PF01047.22 gi|154150158|ref|YP_001403776.1| - 4.1e-16 58.6 0.0 6.8e-16 57.9 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|154150158|ref|YP_001403776.1| - 1.5e-14 53.6 0.1 2.7e-14 52.8 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|154150158|ref|YP_001403776.1| - 5.9e-05 23.5 0.1 8.8e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|154150158|ref|YP_001403776.1| - 0.00022 20.7 0.0 0.00075 19.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding FokI_C PF02980.16 gi|154150158|ref|YP_001403776.1| - 0.0021 18.1 0.0 0.011 15.7 0.0 1.7 1 1 1 2 2 2 1 Restriction endonuclease FokI, catalytic domain HTH_Crp_2 PF13545.6 gi|154150158|ref|YP_001403776.1| - 0.0061 16.5 0.0 0.016 15.1 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|154150158|ref|YP_001403776.1| - 0.016 15.1 0.0 0.041 13.8 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|154150158|ref|YP_001403776.1| - 0.044 13.6 0.2 0.28 11.0 0.0 2.3 2 1 1 3 3 3 0 IclR helix-turn-helix domain RQC PF09382.10 gi|154150158|ref|YP_001403776.1| - 0.14 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 RQC domain LysE PF01810.18 gi|154150159|ref|YP_001403777.1| - 7.3e-21 74.5 11.7 8.5e-21 74.3 11.7 1.0 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 gi|154150159|ref|YP_001403777.1| - 0.44 10.2 7.5 1.1 9.0 7.5 1.9 1 1 0 1 1 1 0 Integral membrane protein TerC family Na_H_Exchanger PF00999.21 gi|154150160|ref|YP_001403778.1| - 0.008 15.0 0.1 0.0087 14.9 0.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Abhydrolase_9_N PF15420.6 gi|154150160|ref|YP_001403778.1| - 0.015 15.3 0.6 0.017 15.1 0.6 1.0 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus DUF3112 PF11309.8 gi|154150160|ref|YP_001403778.1| - 0.047 13.1 0.1 0.054 12.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) PsbN PF02468.15 gi|154150160|ref|YP_001403778.1| - 9.2 6.2 5.7 5.1 7.0 0.1 2.3 2 1 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) TspO_MBR PF03073.15 gi|154150162|ref|YP_001403780.1| - 3.9e-41 140.3 24.1 4.8e-41 140.0 24.1 1.1 1 0 0 1 1 1 1 TspO/MBR family SpoOE-like PF09388.10 gi|154150163|ref|YP_001403781.1| - 0.14 12.1 0.9 0.19 11.7 0.9 1.2 1 0 0 1 1 1 0 Spo0E like sporulation regulatory protein eIF-1a PF01176.19 gi|154150164|ref|YP_001403782.1| - 3.3e-19 68.4 0.7 6.2e-19 67.6 0.5 1.5 1 1 0 1 1 1 1 Translation initiation factor 1A / IF-1 IMS PF00817.20 gi|154150165|ref|YP_001403783.1| - 1.4e-46 158.2 0.2 2.2e-46 157.5 0.0 1.4 2 0 0 2 2 2 1 impB/mucB/samB family IMS_C PF11799.8 gi|154150165|ref|YP_001403783.1| - 3.9e-17 63.0 0.4 7.5e-17 62.1 0.3 1.5 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|154150165|ref|YP_001403783.1| - 6.1e-12 45.1 0.1 1.2e-11 44.2 0.1 1.5 1 0 0 1 1 1 1 IMS family HHH motif Nre_N PF04894.12 gi|154150166|ref|YP_001403784.1| - 7.6e-80 268.6 0.0 1e-79 268.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|154150166|ref|YP_001403784.1| - 4.8e-35 119.8 0.0 7.6e-35 119.2 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DUF2251 PF10008.9 gi|154150166|ref|YP_001403784.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2251) Sulf_transp PF04143.14 gi|154150167|ref|YP_001403785.1| - 2.5e-24 86.4 11.3 2.9e-24 86.2 11.3 1.0 1 0 0 1 1 1 1 Sulphur transport Sulf_transp PF04143.14 gi|154150168|ref|YP_001403786.1| - 6.5e-16 58.8 12.3 6.5e-16 58.8 12.3 1.3 1 1 0 1 1 1 1 Sulphur transport UPF0114 PF03350.16 gi|154150168|ref|YP_001403786.1| - 0.13 12.5 0.5 0.13 12.5 0.5 2.6 3 0 0 3 3 3 0 Uncharacterized protein family, UPF0114 DUF1294 PF06961.13 gi|154150169|ref|YP_001403787.1| - 3.6e-22 78.3 0.2 5.5e-22 77.8 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) Bax1-I PF01027.20 gi|154150169|ref|YP_001403787.1| - 0.012 15.4 0.6 0.018 14.9 0.6 1.3 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 dCMP_cyt_deam_1 PF00383.23 gi|154150170|ref|YP_001403788.1| - 1.4e-17 63.4 0.2 1.9e-17 63.0 0.2 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|154150170|ref|YP_001403788.1| - 4.8e-06 26.4 0.0 1.7e-05 24.6 0.0 1.8 1 1 0 1 1 1 1 MafB19-like deaminase Palm_thioest PF02089.15 gi|154150171|ref|YP_001403789.1| - 0.00012 22.0 0.0 0.00016 21.6 0.0 1.2 1 0 0 1 1 1 1 Palmitoyl protein thioesterase Hydrolase_4 PF12146.8 gi|154150171|ref|YP_001403789.1| - 0.00076 18.8 0.0 0.01 15.1 0.0 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 PGAP1 PF07819.13 gi|154150171|ref|YP_001403789.1| - 0.0028 17.4 0.0 0.0047 16.7 0.0 1.3 1 0 0 1 1 1 1 PGAP1-like protein Lipase_2 PF01674.18 gi|154150171|ref|YP_001403789.1| - 0.0069 15.9 0.0 0.02 14.4 0.0 1.8 1 1 0 1 1 1 1 Lipase (class 2) PATR PF12951.7 gi|154150174|ref|YP_001403792.1| - 0.053 13.6 3.3 7.7 6.7 2.7 2.6 2 0 0 2 2 2 0 Passenger-associated-transport-repeat ABC_tran PF00005.27 gi|154150175|ref|YP_001403793.1| - 2e-29 102.8 0.0 3.1e-29 102.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154150175|ref|YP_001403793.1| - 6.2e-11 42.6 0.7 6.4e-06 26.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|154150175|ref|YP_001403793.1| - 5.4e-05 23.8 0.0 0.00011 22.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|154150175|ref|YP_001403793.1| - 0.00047 20.7 0.2 0.00072 20.1 0.2 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|154150175|ref|YP_001403793.1| - 0.041 13.5 0.0 0.16 11.6 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|154150175|ref|YP_001403793.1| - 0.041 14.1 0.0 0.065 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain TusA PF01206.17 gi|154150175|ref|YP_001403793.1| - 0.045 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA AAA_13 PF13166.6 gi|154150175|ref|YP_001403793.1| - 0.14 10.8 0.0 4.5 5.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|154150176|ref|YP_001403794.1| - 1e-24 87.1 15.9 1e-24 87.1 15.9 1.6 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|154150176|ref|YP_001403794.1| - 6.4e-07 28.8 30.3 2.4e-06 26.9 30.3 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein 7TM_GPCR_Sru PF10322.9 gi|154150176|ref|YP_001403794.1| - 0.013 14.9 10.2 0.015 14.6 5.1 2.1 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Sru ABC2_membrane_2 PF12679.7 gi|154150176|ref|YP_001403794.1| - 0.02 14.2 16.4 0.23 10.7 12.4 2.1 1 1 0 2 2 2 0 ABC-2 family transporter protein Pkinase PF00069.25 gi|154150178|ref|YP_001403796.1| - 1.6e-08 34.3 0.1 1.4e-07 31.2 0.1 2.1 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|154150178|ref|YP_001403796.1| - 0.0021 17.4 0.0 0.0094 15.3 0.0 1.9 2 0 0 2 2 2 1 Protein tyrosine kinase MIP-T3_C PF17749.1 gi|154150178|ref|YP_001403796.1| - 0.011 15.8 1.0 0.015 15.2 0.0 1.7 2 0 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region DUF572 PF04502.13 gi|154150178|ref|YP_001403796.1| - 0.19 11.3 1.8 0.28 10.8 1.8 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF572) OEP PF02321.18 gi|154150178|ref|YP_001403796.1| - 0.37 10.6 4.5 0.62 9.8 4.5 1.3 1 0 0 1 1 1 0 Outer membrane efflux protein PP2C_2 PF13672.6 gi|154150179|ref|YP_001403797.1| - 1.6e-45 155.3 0.1 1.9e-45 155.1 0.1 1.0 1 0 0 1 1 1 1 Protein phosphatase 2C Ham1p_like PF01725.16 gi|154150179|ref|YP_001403797.1| - 0.062 13.2 0.0 0.093 12.6 0.0 1.2 1 0 0 1 1 1 0 Ham1 family VWA PF00092.28 gi|154150180|ref|YP_001403798.1| - 3.7e-10 40.3 0.0 8.7e-10 39.1 0.0 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|154150180|ref|YP_001403798.1| - 1.1e-06 29.2 0.0 2.6e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|154150180|ref|YP_001403798.1| - 0.00022 21.2 0.0 0.00047 20.1 0.0 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain Copine PF07002.16 gi|154150180|ref|YP_001403798.1| - 0.044 13.2 0.0 0.056 12.9 0.0 1.1 1 0 0 1 1 1 0 Copine PKD PF00801.20 gi|154150181|ref|YP_001403799.1| - 1.5e-31 108.0 35.9 7.6e-15 54.5 8.6 5.3 4 2 0 4 4 4 3 PKD domain TIG PF01833.24 gi|154150181|ref|YP_001403799.1| - 1.6e-12 47.4 11.0 1.6e-12 47.4 11.0 5.2 4 2 0 4 4 4 1 IPT/TIG domain DUF4399 PF14347.6 gi|154150181|ref|YP_001403799.1| - 0.0056 17.0 0.0 1.1 9.6 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4399) MG2 PF01835.19 gi|154150181|ref|YP_001403799.1| - 0.066 13.7 14.5 0.89 10.1 0.1 4.0 3 1 1 4 4 4 0 MG2 domain DUF2374 PF09574.10 gi|154150181|ref|YP_001403799.1| - 0.14 12.0 1.3 0.43 10.4 1.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (Duf2374) PKD_3 PF16820.5 gi|154150181|ref|YP_001403799.1| - 3.6 7.4 13.2 10 6.0 0.2 4.3 5 0 0 5 5 5 0 PKD-like domain FGase PF05013.12 gi|154150182|ref|YP_001403800.1| - 1.2e-49 169.4 0.0 1.5e-49 169.1 0.0 1.1 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase PAS_4 PF08448.10 gi|154150183|ref|YP_001403801.1| - 5.5e-38 129.6 0.0 7.1e-11 42.3 0.0 4.4 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|154150183|ref|YP_001403801.1| - 7e-35 119.4 0.0 3.8e-10 40.0 0.0 4.6 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|154150183|ref|YP_001403801.1| - 5.6e-34 116.5 0.0 1e-09 38.4 0.0 4.6 4 0 0 4 4 4 4 PAS fold Response_reg PF00072.24 gi|154150183|ref|YP_001403801.1| - 4.4e-23 81.6 0.0 9.8e-23 80.5 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|154150183|ref|YP_001403801.1| - 8.6e-20 70.8 0.0 8.9e-06 25.9 0.0 4.3 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|154150183|ref|YP_001403801.1| - 9.8e-15 54.2 0.1 0.0028 17.7 0.0 4.8 5 0 0 5 5 4 3 PAS domain HATPase_c PF02518.26 gi|154150183|ref|YP_001403801.1| - 2.4e-08 34.5 0.0 5.7e-08 33.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|154150183|ref|YP_001403801.1| - 6.9e-05 22.9 0.0 0.49 10.5 0.0 2.7 2 0 0 2 2 2 2 PAS domain SPOB_a PF14689.6 gi|154150183|ref|YP_001403801.1| - 0.0099 15.6 0.0 0.026 14.2 0.0 1.7 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA_4TM PF16926.5 gi|154150183|ref|YP_001403801.1| - 0.022 14.3 0.1 0.039 13.5 0.1 1.4 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|154150183|ref|YP_001403801.1| - 0.025 14.4 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TyeA PF09059.10 gi|154150183|ref|YP_001403801.1| - 0.03 14.4 0.1 0.52 10.5 0.0 2.7 3 0 0 3 3 3 0 TyeA PMT2_N PF17987.1 gi|154150183|ref|YP_001403801.1| - 0.062 13.5 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoethanolamine N-methyltransferase 2 N-terminal Abhydrolase_3 PF07859.13 gi|154150184|ref|YP_001403802.1| - 8.1e-47 159.8 0.0 9.8e-47 159.5 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Say1_Mug180 PF10340.9 gi|154150184|ref|YP_001403802.1| - 2.4e-11 43.1 0.0 3.1e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Steryl acetyl hydrolase Abhydrolase_6 PF12697.7 gi|154150184|ref|YP_001403802.1| - 0.00035 21.3 8.5 0.001 19.7 8.3 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family GPDPase_memb PF10110.9 gi|154150185|ref|YP_001403803.1| - 6.8e-08 31.7 20.6 2.6e-05 23.2 8.6 2.1 2 0 0 2 2 2 2 Membrane domain of glycerophosphoryl diester phosphodiesterase SpoIIE PF07228.12 gi|154150186|ref|YP_001403804.1| - 8e-56 189.0 0.6 1.5e-55 188.2 0.6 1.5 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) dCache_1 PF02743.18 gi|154150186|ref|YP_001403804.1| - 1e-30 107.3 0.2 2.1e-30 106.3 0.2 1.5 1 1 0 1 1 1 1 Cache domain HAMP PF00672.25 gi|154150186|ref|YP_001403804.1| - 9.6e-13 48.3 0.0 3e-12 46.7 0.0 1.9 1 0 0 1 1 1 1 HAMP domain Cache_3-Cache_2 PF17201.4 gi|154150186|ref|YP_001403804.1| - 9.1e-10 38.3 0.0 2.2e-08 33.7 0.0 2.2 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain CxxCxxCC PF03692.15 gi|154150187|ref|YP_001403805.1| - 1.1e-08 35.6 2.0 1.7e-08 35.0 0.9 2.0 1 1 1 2 2 2 1 Putative zinc- or iron-chelating domain DUF3461 PF11944.8 gi|154150189|ref|YP_001403807.1| - 0.012 15.7 0.7 0.025 14.7 0.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3461) APG6_N PF17675.1 gi|154150189|ref|YP_001403807.1| - 0.027 15.0 0.7 0.039 14.5 0.7 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region Nrap_D6 PF17407.2 gi|154150189|ref|YP_001403807.1| - 0.064 13.5 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 Nrap protein domain 6 Endonuc_Holl PF10107.9 gi|154150190|ref|YP_001403808.1| - 2.9e-36 124.7 0.0 3.5e-36 124.5 0.0 1.0 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase CBP_BcsF PF11120.8 gi|154150190|ref|YP_001403808.1| - 0.074 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsF Yopt PF09467.10 gi|154150191|ref|YP_001403809.1| - 0.073 13.1 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein Yopt DEAD PF00270.29 gi|154150192|ref|YP_001403810.1| - 2.5e-52 177.2 0.1 7e-52 175.7 0.1 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|154150192|ref|YP_001403810.1| - 4.6e-34 117.1 0.2 7.6e-32 110.0 0.1 3.0 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DbpA PF03880.15 gi|154150192|ref|YP_001403810.1| - 2.3e-24 85.2 0.0 8.4e-24 83.4 0.0 2.1 1 0 0 1 1 1 1 DbpA RNA binding domain ResIII PF04851.15 gi|154150192|ref|YP_001403810.1| - 1.3e-07 31.7 0.0 2.4e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|154150192|ref|YP_001403810.1| - 0.002 18.5 0.0 0.063 13.6 0.0 2.6 2 1 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|154150192|ref|YP_001403810.1| - 0.0034 17.1 0.0 0.0074 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain CMS1 PF14617.6 gi|154150192|ref|YP_001403810.1| - 0.0054 16.1 0.0 0.015 14.7 0.0 1.7 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit Helicase_RecD PF05127.14 gi|154150192|ref|YP_001403810.1| - 0.021 14.7 0.0 0.056 13.3 0.0 1.7 2 0 0 2 2 2 0 Helicase FMN_red PF03358.15 gi|154150193|ref|YP_001403811.1| - 2.7e-32 111.6 0.0 3.3e-32 111.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154150193|ref|YP_001403811.1| - 4e-09 36.5 0.0 4.9e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.9 gi|154150193|ref|YP_001403811.1| - 0.0032 17.2 0.8 0.0048 16.6 0.8 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) MotA_activ PF09114.10 gi|154150193|ref|YP_001403811.1| - 0.11 12.7 0.3 18 5.5 0.0 2.8 3 0 0 3 3 3 0 Transcription factor MotA, activation domain AA_permease_2 PF13520.6 gi|154150194|ref|YP_001403812.1| - 3.6e-53 180.9 58.0 4.3e-53 180.7 58.0 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|154150194|ref|YP_001403812.1| - 1.8e-41 142.3 52.5 2.5e-41 141.8 52.5 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|154150194|ref|YP_001403812.1| - 1.5e-13 50.6 6.1 1.5e-13 50.6 6.1 5.1 7 1 1 8 8 8 1 C-terminus of AA_permease Spore_permease PF03845.13 gi|154150194|ref|YP_001403812.1| - 0.0027 16.6 7.8 0.0027 16.6 7.8 3.0 3 0 0 3 3 3 2 Spore germination protein Lactamase_B_2 PF12706.7 gi|154150195|ref|YP_001403813.1| - 2.6e-25 89.1 0.0 3.2e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|154150195|ref|YP_001403813.1| - 0.00014 21.9 1.5 0.0003 20.9 1.5 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily AP_endonuc_2 PF01261.24 gi|154150197|ref|YP_001403815.1| - 9.3e-35 120.0 0.0 1.1e-34 119.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel tRNA_int_endo PF01974.17 gi|154150198|ref|YP_001403816.1| - 5.6e-45 151.3 3.2 5.1e-22 77.7 0.3 2.3 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|154150198|ref|YP_001403816.1| - 2.5e-23 81.5 1.5 1.8e-11 43.5 0.0 3.0 4 0 0 4 4 4 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|154150198|ref|YP_001403816.1| - 5.4e-07 29.7 0.0 0.017 15.2 0.0 2.6 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term tRNA-synt_1b PF00579.25 gi|154150199|ref|YP_001403817.1| - 7.4e-31 107.5 0.0 7.1e-18 64.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.20 gi|154150200|ref|YP_001403818.1| - 3.5e-91 305.0 0.0 4.4e-91 304.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|154150200|ref|YP_001403818.1| - 2e-10 40.5 0.0 2.3e-06 27.2 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain PheRS_DBD3 PF18553.1 gi|154150200|ref|YP_001403818.1| - 7e-05 23.0 0.0 0.00047 20.4 0.0 2.3 2 0 0 2 2 2 1 PheRS DNA binding domain 3 tRNA-synt_2 PF00152.20 gi|154150200|ref|YP_001403818.1| - 0.0024 17.0 0.4 0.024 13.7 0.0 2.4 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) P22_Cro PF14549.6 gi|154150200|ref|YP_001403818.1| - 0.11 12.4 0.0 0.3 11.0 0.0 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro tRNA_synthFbeta PF17759.1 gi|154150201|ref|YP_001403819.1| - 5.6e-38 130.5 0.0 9.8e-38 129.7 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|154150201|ref|YP_001403819.1| - 1.1e-19 70.4 0.0 1.7e-16 60.2 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|154150201|ref|YP_001403819.1| - 9.2e-17 61.3 0.0 1.8e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_His PF13393.6 gi|154150201|ref|YP_001403819.1| - 0.015 14.6 0.1 0.028 13.7 0.1 1.3 1 0 0 1 1 1 0 Histidyl-tRNA synthetase PhetRS_B1 PF18262.1 gi|154150201|ref|YP_001403819.1| - 0.021 15.0 0.0 0.24 11.6 0.0 2.7 2 1 1 3 3 3 0 Phe-tRNA synthetase beta subunit B1 domain B1 PF02246.15 gi|154150201|ref|YP_001403819.1| - 0.11 12.6 0.3 0.24 11.4 0.3 1.5 1 0 0 1 1 1 0 Protein L b1 domain His_biosynth PF00977.21 gi|154150202|ref|YP_001403820.1| - 2.3e-86 289.0 0.1 2.6e-86 288.8 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|154150202|ref|YP_001403820.1| - 5.1e-07 29.4 0.5 0.0064 15.9 0.1 2.6 2 1 1 3 3 3 2 Nitronate monooxygenase TMP-TENI PF02581.17 gi|154150202|ref|YP_001403820.1| - 2.1e-05 24.0 0.2 0.071 12.4 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|154150202|ref|YP_001403820.1| - 0.00021 20.7 0.0 0.013 14.9 0.0 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator ThiG PF05690.14 gi|154150202|ref|YP_001403820.1| - 0.0003 20.2 0.2 0.32 10.3 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|154150202|ref|YP_001403820.1| - 0.0012 18.1 0.0 0.3 10.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|154150202|ref|YP_001403820.1| - 0.0015 17.8 0.2 0.61 9.3 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|154150202|ref|YP_001403820.1| - 0.062 12.3 0.3 8.2 5.3 0.0 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain AdoHcyase PF05221.17 gi|154150203|ref|YP_001403821.1| - 1.2e-51 175.6 0.0 4.3e-26 91.8 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|154150203|ref|YP_001403821.1| - 1.8e-46 158.2 2.3 8.3e-46 156.0 0.9 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|154150203|ref|YP_001403821.1| - 4.4e-09 35.9 0.2 8.4e-09 35.0 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|154150203|ref|YP_001403821.1| - 3.2e-06 26.8 0.2 7.5e-06 25.6 0.2 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|154150203|ref|YP_001403821.1| - 0.0026 18.0 0.1 0.0062 16.8 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|154150203|ref|YP_001403821.1| - 0.026 13.8 0.7 0.07 12.4 0.7 1.8 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TSCPD PF12637.7 gi|154150203|ref|YP_001403821.1| - 0.09 13.0 0.2 17 5.7 0.1 2.5 2 0 0 2 2 2 0 TSCPD domain EamA PF00892.20 gi|154150204|ref|YP_001403822.1| - 4.1e-24 85.3 37.4 1.3e-14 54.5 10.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.6 gi|154150204|ref|YP_001403822.1| - 3.7e-06 26.7 8.6 5.6e-06 26.1 8.6 1.2 1 0 0 1 1 1 1 Putative multidrug resistance efflux transporter OGG_N PF07934.12 gi|154150205|ref|YP_001403823.1| - 1.2e-17 64.2 0.0 2.1e-16 60.1 0.0 2.2 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.25 gi|154150205|ref|YP_001403823.1| - 1.7e-06 28.4 0.0 2.4e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|154150205|ref|YP_001403823.1| - 0.066 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif Radical_SAM PF04055.21 gi|154150208|ref|YP_001403826.1| - 1.9e-25 90.2 0.1 2.4e-25 89.8 0.1 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|154150208|ref|YP_001403826.1| - 8e-07 29.2 0.1 1.6e-06 28.2 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|154150208|ref|YP_001403826.1| - 0.00012 22.3 0.1 0.00025 21.3 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_36 PF13730.6 gi|154150209|ref|YP_001403827.1| - 0.16 12.0 0.0 8.6 6.4 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain SieB PF14163.6 gi|154150209|ref|YP_001403827.1| - 0.32 10.5 6.1 0.077 12.5 0.6 2.5 2 0 0 2 2 2 0 Super-infection exclusion protein B Glycophorin_A PF01102.18 gi|154150209|ref|YP_001403827.1| - 0.44 10.8 1.4 1.1 9.6 0.0 2.2 2 0 0 2 2 2 0 Glycophorin A RhodobacterPufX PF11511.8 gi|154150209|ref|YP_001403827.1| - 1.4 8.6 7.2 1.5 8.5 0.1 2.9 3 0 0 3 3 3 0 Intrinsic membrane protein PufX FKBP_C PF00254.28 gi|154150210|ref|YP_001403828.1| - 4.5e-22 78.2 0.0 6e-22 77.8 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase NTP_transf_2 PF01909.23 gi|154150212|ref|YP_001403830.1| - 8.5e-11 42.0 0.0 9.9e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|154150212|ref|YP_001403830.1| - 1.5e-08 34.6 0.0 1.8e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Adenyl_cycl_N PF12633.7 gi|154150212|ref|YP_001403830.1| - 0.14 12.1 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain HicB_lk_antitox PF15919.5 gi|154150213|ref|YP_001403831.1| - 2.2e-10 40.7 0.0 2.4e-10 40.6 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RRP7 PF12923.7 gi|154150213|ref|YP_001403831.1| - 0.018 15.1 0.0 0.021 15.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain PHD_like PF12910.7 gi|154150213|ref|YP_001403831.1| - 0.077 13.0 0.0 0.08 13.0 0.0 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system AAT PF03417.16 gi|154150214|ref|YP_001403832.1| - 2.5e-10 40.4 0.0 3.6e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase CBAH PF02275.18 gi|154150214|ref|YP_001403832.1| - 3.2e-09 36.9 0.0 5.9e-09 36.0 0.0 1.5 2 0 0 2 2 2 1 Linear amide C-N hydrolases, choloylglycine hydrolase family TPP_enzyme_C PF02775.21 gi|154150215|ref|YP_001403833.1| - 3.6e-26 91.8 0.7 1.7e-25 89.6 0.0 2.1 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YjeF_N PF03853.15 gi|154150215|ref|YP_001403833.1| - 0.014 15.3 0.7 7.3 6.5 0.0 2.9 3 0 0 3 3 3 0 YjeF-related protein N-terminus POR_N PF01855.19 gi|154150216|ref|YP_001403834.1| - 6.7e-70 235.4 0.5 9.1e-70 235.0 0.5 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|154150216|ref|YP_001403834.1| - 2.3e-34 117.7 1.3 2.6e-34 117.6 0.1 1.7 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|154150216|ref|YP_001403834.1| - 8.7e-06 25.6 0.1 1.9e-05 24.5 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|154150217|ref|YP_001403835.1| - 1.3e-10 40.7 22.6 3.3e-06 26.7 4.0 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154150217|ref|YP_001403835.1| - 1.2e-08 35.4 40.0 2e-05 25.1 16.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154150217|ref|YP_001403835.1| - 1.4e-07 31.5 11.1 2.1e-07 31.0 11.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154150217|ref|YP_001403835.1| - 4.4e-07 29.7 21.2 0.00037 20.4 5.2 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154150217|ref|YP_001403835.1| - 6.4e-07 30.2 14.7 0.0029 18.5 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|154150217|ref|YP_001403835.1| - 1.1e-06 28.7 15.5 1.4e-06 28.4 14.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154150217|ref|YP_001403835.1| - 1.3e-05 25.0 13.4 0.0035 17.3 1.3 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|154150217|ref|YP_001403835.1| - 1.9e-05 25.0 10.5 0.0084 16.5 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150217|ref|YP_001403835.1| - 3.5e-05 23.8 27.6 0.00017 21.7 16.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154150217|ref|YP_001403835.1| - 0.00011 22.6 10.6 0.012 16.1 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150217|ref|YP_001403835.1| - 0.011 16.2 17.9 0.29 11.8 5.6 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|154150217|ref|YP_001403835.1| - 0.35 11.8 17.2 4.1 8.3 5.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154150217|ref|YP_001403835.1| - 0.41 11.2 13.8 0.47 11.0 3.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|154150217|ref|YP_001403835.1| - 0.88 10.4 14.7 0.34 11.7 2.6 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain POR PF01558.18 gi|154150218|ref|YP_001403836.1| - 5.3e-38 130.8 0.3 6.4e-38 130.6 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF2194 PF09960.9 gi|154150218|ref|YP_001403836.1| - 0.15 10.3 0.0 0.17 10.2 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2194) Epimerase PF01370.21 gi|154150220|ref|YP_001403838.1| - 5.1e-50 170.2 0.0 6.6e-50 169.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|154150220|ref|YP_001403838.1| - 4.9e-44 151.1 0.0 5.8e-44 150.9 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|154150220|ref|YP_001403838.1| - 2.7e-18 66.0 0.0 3.4e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|154150220|ref|YP_001403838.1| - 1.9e-14 53.5 0.0 1.4e-13 50.7 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|154150220|ref|YP_001403838.1| - 2.6e-12 46.4 0.0 3.4e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|154150220|ref|YP_001403838.1| - 3.5e-11 42.8 0.1 2e-06 27.2 0.0 2.6 1 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|154150220|ref|YP_001403838.1| - 2.6e-06 27.5 0.0 3.7e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|154150220|ref|YP_001403838.1| - 8.9e-05 22.0 0.5 0.0062 16.0 0.1 2.4 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|154150220|ref|YP_001403838.1| - 0.004 17.1 0.0 0.0071 16.3 0.0 1.4 1 0 0 1 1 1 1 KR domain PhosphMutase PF10143.9 gi|154150221|ref|YP_001403839.1| - 3.1e-55 186.6 0.0 4.4e-55 186.2 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|154150221|ref|YP_001403839.1| - 2.7e-39 135.1 0.0 3e-39 134.9 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|154150221|ref|YP_001403839.1| - 0.027 14.1 0.0 0.14 11.7 0.0 1.9 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase HEV_ORF1 PF02444.16 gi|154150221|ref|YP_001403839.1| - 0.13 12.9 0.8 3.8 8.1 0.1 2.4 2 0 0 2 2 2 0 Hepatitis E virus ORF-2 (Putative capsid protein) AAA_16 PF13191.6 gi|154150222|ref|YP_001403840.1| - 1.3e-09 38.7 0.0 9.5e-08 32.6 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|154150222|ref|YP_001403840.1| - 4e-09 36.8 0.0 7.4e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|154150222|ref|YP_001403840.1| - 1.8e-05 24.6 0.1 5.9e-05 23.0 0.1 2.0 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain NACHT PF05729.12 gi|154150222|ref|YP_001403840.1| - 0.00037 20.5 0.0 0.00062 19.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Viral_helicase1 PF01443.18 gi|154150222|ref|YP_001403840.1| - 0.003 17.3 0.1 0.0046 16.7 0.1 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA PF00004.29 gi|154150222|ref|YP_001403840.1| - 0.0063 16.9 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.10 gi|154150222|ref|YP_001403840.1| - 0.0076 15.7 0.0 0.015 14.7 0.0 1.4 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_7 PF12775.7 gi|154150222|ref|YP_001403840.1| - 0.0079 15.7 0.2 0.019 14.5 0.1 1.6 1 1 1 2 2 2 1 P-loop containing dynein motor region AAA_18 PF13238.6 gi|154150222|ref|YP_001403840.1| - 0.012 16.2 0.0 0.035 14.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|154150222|ref|YP_001403840.1| - 0.016 14.9 0.1 0.1 12.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF835 PF05763.12 gi|154150222|ref|YP_001403840.1| - 0.031 14.0 0.1 0.053 13.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF835) AAA_33 PF13671.6 gi|154150222|ref|YP_001403840.1| - 0.039 14.1 0.3 0.094 12.9 0.1 1.8 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|154150222|ref|YP_001403840.1| - 0.049 12.8 0.0 0.084 12.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain SRP54 PF00448.22 gi|154150222|ref|YP_001403840.1| - 0.052 13.2 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF2075 PF09848.9 gi|154150222|ref|YP_001403840.1| - 0.091 12.0 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MeaB PF03308.16 gi|154150222|ref|YP_001403840.1| - 0.1 11.6 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_17 PF13207.6 gi|154150222|ref|YP_001403840.1| - 0.15 12.5 0.6 0.44 11.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain MCH PF02289.16 gi|154150223|ref|YP_001403841.1| - 1.8e-130 434.8 0.0 2.1e-130 434.6 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Acylphosphatase PF00708.18 gi|154150224|ref|YP_001403842.1| - 9.6e-22 77.2 0.0 1.1e-21 77.1 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Ectoine_synth PF06339.12 gi|154150224|ref|YP_001403842.1| - 0.1 12.8 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase T2SSM_b PF10741.9 gi|154150224|ref|YP_001403842.1| - 0.14 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b PALP PF00291.25 gi|154150226|ref|YP_001403844.1| - 1.4e-77 261.0 3.2 1.7e-77 260.8 3.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Prok-E2_C PF14459.6 gi|154150226|ref|YP_001403844.1| - 0.011 15.9 0.2 0.026 14.7 0.2 1.6 1 0 0 1 1 1 0 Prokaryotic E2 family C zinc_ribbon_2 PF13240.6 gi|154150226|ref|YP_001403844.1| - 0.057 13.2 0.8 0.11 12.3 0.8 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|154150226|ref|YP_001403844.1| - 0.24 11.4 1.5 0.45 10.5 1.5 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|154150226|ref|YP_001403844.1| - 1.3 8.9 3.2 24 4.8 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain CN_hydrolase PF00795.22 gi|154150227|ref|YP_001403845.1| - 5.4e-46 157.0 0.0 6.1e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF2157 PF09925.9 gi|154150228|ref|YP_001403846.1| - 0.14 11.9 4.2 0.17 11.7 4.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) Phage_holin_3_6 PF07332.11 gi|154150228|ref|YP_001403846.1| - 0.26 11.3 6.9 0.32 11.0 6.9 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3483 PF11982.8 gi|154150228|ref|YP_001403846.1| - 0.47 10.0 5.0 0.51 9.9 5.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3483) DUF2207 PF09972.9 gi|154150228|ref|YP_001403846.1| - 0.73 8.5 4.6 0.7 8.6 4.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) YlaC PF10777.9 gi|154150228|ref|YP_001403846.1| - 1.9 8.3 4.0 2.2 8.1 4.0 1.1 1 0 0 1 1 1 0 Inner membrane protein YlaC MarC PF01914.17 gi|154150229|ref|YP_001403847.1| - 5.5e-55 185.9 16.2 6.3e-55 185.7 16.2 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.18 gi|154150229|ref|YP_001403847.1| - 1.1e-07 31.5 7.2 2e-07 30.7 7.2 1.4 1 1 0 1 1 1 1 LysE type translocator Vma12 PF11712.8 gi|154150229|ref|YP_001403847.1| - 0.12 12.4 1.0 0.26 11.4 0.2 1.9 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase SfLAP PF11139.8 gi|154150229|ref|YP_001403847.1| - 0.83 9.1 9.4 0.11 11.9 2.5 2.3 2 1 1 3 3 3 0 Sap, sulfolipid-1-addressing protein DUF373 PF04123.13 gi|154150229|ref|YP_001403847.1| - 1.5 8.1 12.6 2.1 7.7 12.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) NDK PF00334.19 gi|154150230|ref|YP_001403848.1| - 4.9e-52 175.5 0.0 5.5e-52 175.3 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase DUF4926 PF16277.5 gi|154150230|ref|YP_001403848.1| - 0.12 11.7 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4926) Ribosomal_L24e PF01246.20 gi|154150231|ref|YP_001403849.1| - 9.9e-23 80.2 0.7 1e-22 80.1 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e YHS PF04945.13 gi|154150231|ref|YP_001403849.1| - 7.9e-05 22.7 0.5 0.00011 22.2 0.5 1.2 1 0 0 1 1 1 1 YHS domain VATC PF18716.1 gi|154150231|ref|YP_001403849.1| - 0.00019 21.2 2.6 0.00038 20.2 2.6 1.5 1 1 0 1 1 1 1 Vms1-associating treble clef domain zf-FCS PF06467.14 gi|154150231|ref|YP_001403849.1| - 0.00076 19.4 2.0 0.0014 18.6 1.9 1.5 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-MYND PF01753.18 gi|154150231|ref|YP_001403849.1| - 0.026 14.6 0.1 0.054 13.6 0.1 1.6 1 1 0 1 1 1 0 MYND finger zf-FLZ PF04570.14 gi|154150231|ref|YP_001403849.1| - 0.03 13.8 1.3 0.052 13.0 1.3 1.4 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 ICAM_N PF03921.14 gi|154150231|ref|YP_001403849.1| - 0.052 13.2 0.0 0.066 12.9 0.0 1.2 1 0 0 1 1 1 0 Intercellular adhesion molecule (ICAM), N-terminal domain Ribosomal_S28e PF01200.18 gi|154150232|ref|YP_001403850.1| - 1.4e-31 108.3 0.8 1.5e-31 108.2 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|154150233|ref|YP_001403851.1| - 1.2e-23 82.7 0.7 1.4e-23 82.4 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|154150233|ref|YP_001403851.1| - 0.00069 19.4 0.1 0.0013 18.6 0.0 1.5 2 0 0 2 2 2 1 PELOTA RNA binding domain DUF1028 PF06267.12 gi|154150233|ref|YP_001403851.1| - 0.045 13.5 0.5 0.068 12.9 0.1 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF1028) Nup54_57_C PF18570.1 gi|154150233|ref|YP_001403851.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 NUP57/Nup54 C-terminal domain YtxH PF12732.7 gi|154150233|ref|YP_001403851.1| - 0.23 12.0 7.4 1.8 9.1 1.7 2.2 2 0 0 2 2 2 0 YtxH-like protein DUF2298 PF10060.9 gi|154150234|ref|YP_001403852.1| - 2.6e-110 369.5 36.3 2.6e-110 369.5 36.3 1.9 2 0 0 2 2 2 1 Uncharacterized membrane protein (DUF2298) Peptidase_A8 PF01252.18 gi|154150234|ref|YP_001403852.1| - 1.1 9.5 8.2 8.6 6.6 0.3 3.3 2 1 0 3 3 3 0 Signal peptidase (SPase) II LPG_synthase_TM PF03706.13 gi|154150235|ref|YP_001403853.1| - 3.8e-46 158.0 33.1 4.4e-46 157.8 33.1 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|154150236|ref|YP_001403854.1| - 2.8e-25 89.1 0.0 3.7e-25 88.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|154150236|ref|YP_001403854.1| - 1.7e-06 28.1 0.0 3e-06 27.3 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|154150236|ref|YP_001403854.1| - 1.6e-05 24.6 0.0 1.8e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|154150236|ref|YP_001403854.1| - 0.0018 18.7 0.0 0.0037 17.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 TOC159_MAD PF11886.8 gi|154150236|ref|YP_001403854.1| - 0.16 10.8 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Translocase of chloroplast 159/132, membrane anchor domain Amino_oxidase PF01593.24 gi|154150237|ref|YP_001403855.1| - 2.9e-21 76.3 0.0 4.7e-20 72.3 0.0 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|154150237|ref|YP_001403855.1| - 1.3e-11 44.5 0.2 3e-11 43.4 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|154150237|ref|YP_001403855.1| - 4.4e-05 23.2 0.3 0.00023 20.9 0.3 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|154150237|ref|YP_001403855.1| - 0.018 14.1 0.2 0.035 13.2 0.2 1.4 1 0 0 1 1 1 0 FAD binding domain FAD_oxidored PF12831.7 gi|154150237|ref|YP_001403855.1| - 0.025 13.9 0.0 0.057 12.8 0.0 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|154150237|ref|YP_001403855.1| - 0.17 10.6 0.6 0.99 8.0 0.2 1.9 2 0 0 2 2 2 0 HI0933-like protein Tubulin PF00091.25 gi|154150238|ref|YP_001403856.1| - 3.9e-27 95.7 0.0 8.4e-27 94.6 0.0 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|154150238|ref|YP_001403856.1| - 0.00035 19.9 0.0 0.00059 19.1 0.0 1.3 1 0 0 1 1 1 1 Tubulin like DUF4307 PF14155.6 gi|154150239|ref|YP_001403857.1| - 3.1 7.7 5.7 25 4.8 1.2 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) SP_C-Propep PF08999.10 gi|154150239|ref|YP_001403857.1| - 6.6 6.6 6.2 7.7 6.4 1.5 2.4 2 0 0 2 2 2 0 Surfactant protein C, N terminal propeptide TPR_16 PF13432.6 gi|154150239|ref|YP_001403857.1| - 7 7.4 9.2 18 6.1 4.2 3.3 2 2 1 3 3 3 0 Tetratricopeptide repeat PMT_2 PF13231.6 gi|154150240|ref|YP_001403858.1| - 1.3e-18 67.7 18.5 1.3e-18 67.7 18.5 2.7 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|154150240|ref|YP_001403858.1| - 1.9e-08 34.2 20.3 1.9e-08 34.2 20.3 2.2 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Ribosomal_S10 PF00338.22 gi|154150241|ref|YP_001403859.1| - 6.6e-26 90.4 0.0 7.4e-26 90.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|154150241|ref|YP_001403859.1| - 0.0062 17.3 0.0 0.014 16.2 0.0 1.6 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|154150242|ref|YP_001403860.1| - 1.3e-55 188.0 0.0 1.4e-55 187.9 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|154150242|ref|YP_001403860.1| - 3.8e-38 130.2 0.5 1.5e-37 128.4 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|154150242|ref|YP_001403860.1| - 6e-17 61.8 1.0 3.2e-16 59.5 0.6 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|154150242|ref|YP_001403860.1| - 3.8e-05 23.7 0.0 0.00083 19.4 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|154150242|ref|YP_001403860.1| - 0.00012 21.9 0.9 0.00033 20.5 0.9 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.12 gi|154150242|ref|YP_001403860.1| - 0.0071 15.7 0.2 0.083 12.2 0.2 2.1 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region RsgA_GTPase PF03193.16 gi|154150242|ref|YP_001403860.1| - 0.088 12.7 0.2 0.29 11.0 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase FeoB_N PF02421.18 gi|154150242|ref|YP_001403860.1| - 0.18 11.3 0.2 0.72 9.4 0.1 1.9 2 1 0 2 2 2 0 Ferrous iron transport protein B CobS PF02654.15 gi|154150244|ref|YP_001403862.1| - 2.6e-38 132.3 16.0 3e-38 132.1 16.0 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase PgpA PF04608.13 gi|154150245|ref|YP_001403863.1| - 8.2e-10 38.9 0.0 1.1e-09 38.5 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A GATase PF00117.28 gi|154150247|ref|YP_001403865.1| - 2.5e-31 108.9 0.0 3.2e-31 108.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|154150247|ref|YP_001403865.1| - 6.4e-10 39.1 0.3 5.4e-08 32.8 0.2 2.8 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|154150247|ref|YP_001403865.1| - 0.24 10.9 0.4 2.5 7.6 0.4 2.1 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF5516 PF17637.2 gi|154150247|ref|YP_001403865.1| - 0.34 10.7 1.8 0.78 9.5 1.8 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5516) DUF3821 PF12863.7 gi|154150248|ref|YP_001403866.1| - 2.4e-65 220.4 0.5 2.4e-65 220.4 0.5 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF3821) Hamartin PF04388.12 gi|154150248|ref|YP_001403866.1| - 0.8 8.3 9.6 1 7.9 9.6 1.1 1 0 0 1 1 1 0 Hamartin protein Nitroreductase PF00881.24 gi|154150249|ref|YP_001403867.1| - 3.2e-25 89.2 0.0 6.6e-12 45.8 0.0 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|154150249|ref|YP_001403867.1| - 4e-14 52.7 0.2 3.8e-05 23.4 0.0 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase RraA-like PF03737.15 gi|154150250|ref|YP_001403868.1| - 2.7e-40 138.0 0.8 2.7e-40 138.0 0.8 1.9 2 0 0 2 2 2 1 Aldolase/RraA OMPdecase PF00215.24 gi|154150250|ref|YP_001403868.1| - 1.5e-17 63.9 4.6 3.8e-17 62.7 4.6 1.6 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|154150250|ref|YP_001403868.1| - 0.00033 19.9 1.8 0.00069 18.9 1.8 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|154150250|ref|YP_001403868.1| - 0.00085 18.7 1.5 0.00085 18.7 1.5 1.9 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|154150250|ref|YP_001403868.1| - 0.0009 18.8 0.8 0.0095 15.4 0.3 2.3 1 1 1 2 2 2 1 Histidine biosynthesis protein PEP_mutase PF13714.6 gi|154150250|ref|YP_001403868.1| - 0.0085 15.6 3.2 0.33 10.4 0.1 2.4 1 1 0 2 2 2 2 Phosphoenolpyruvate phosphomutase DUF561 PF04481.12 gi|154150250|ref|YP_001403868.1| - 0.033 13.4 0.2 0.12 11.5 0.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF561) TMP-TENI PF02581.17 gi|154150250|ref|YP_001403868.1| - 0.1 11.9 3.1 0.11 11.8 0.3 2.3 1 1 1 2 2 2 0 Thiamine monophosphate synthase ACT PF01842.25 gi|154150251|ref|YP_001403869.1| - 4.5e-15 55.1 0.2 2.1e-06 27.4 0.0 2.7 1 1 2 3 3 3 2 ACT domain ACT_4 PF13291.6 gi|154150251|ref|YP_001403869.1| - 2e-09 37.9 0.1 0.00049 20.6 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|154150251|ref|YP_001403869.1| - 1.6e-08 34.2 0.2 0.00024 20.8 0.0 2.4 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|154150251|ref|YP_001403869.1| - 1.4e-05 25.0 0.0 0.012 15.6 0.0 2.1 2 0 0 2 2 2 2 ACT domain AMP-binding_C_2 PF14535.6 gi|154150252|ref|YP_001403870.1| - 6.6e-32 109.7 0.1 2.3e-31 108.0 0.2 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|154150252|ref|YP_001403870.1| - 9.3e-17 60.7 0.0 1.4e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|154150252|ref|YP_001403870.1| - 0.032 13.1 0.0 0.27 10.0 0.0 2.1 2 0 0 2 2 2 0 GH3 auxin-responsive promoter AMP-binding_C_2 PF14535.6 gi|154150253|ref|YP_001403871.1| - 4.4e-31 107.1 0.1 1.4e-30 105.5 0.2 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|154150253|ref|YP_001403871.1| - 3.5e-19 68.7 2.2 1.5e-17 63.3 2.2 2.0 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|154150253|ref|YP_001403871.1| - 0.0062 15.4 0.1 0.061 12.2 0.0 2.1 2 0 0 2 2 2 1 GH3 auxin-responsive promoter Cas_Cas1 PF01867.16 gi|154150254|ref|YP_001403872.1| - 9.9e-49 166.0 0.0 1.1e-48 165.8 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF4441 PF14536.6 gi|154150254|ref|YP_001403872.1| - 0.077 13.2 0.9 0.74 10.0 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4441) FcoT PF10862.8 gi|154150254|ref|YP_001403872.1| - 0.13 11.8 0.0 0.39 10.3 0.0 1.8 2 0 0 2 2 2 0 FcoT-like thioesterase domain Acylphosphatase PF00708.18 gi|154150255|ref|YP_001403873.1| - 3.8e-20 72.1 0.0 4.5e-20 71.8 0.0 1.1 1 0 0 1 1 1 1 Acylphosphatase TPR_14 PF13428.6 gi|154150256|ref|YP_001403874.1| - 0.015 16.1 1.3 33 5.6 0.0 4.9 5 0 0 5 5 5 0 Tetratricopeptide repeat PGM_PMM_I PF02878.16 gi|154150257|ref|YP_001403875.1| - 1.9e-40 137.8 0.0 5.4e-39 133.1 0.0 2.5 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|154150257|ref|YP_001403875.1| - 2.1e-24 85.9 0.0 4.4e-24 84.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|154150257|ref|YP_001403875.1| - 4.4e-23 81.9 0.0 8.6e-23 80.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|154150257|ref|YP_001403875.1| - 1.1e-10 41.5 0.1 4e-10 39.7 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|154150257|ref|YP_001403875.1| - 0.062 13.5 0.1 4.8 7.4 0.0 2.5 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain MobB PF03205.14 gi|154150258|ref|YP_001403876.1| - 3.6e-19 69.0 0.0 3.9e-19 68.9 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF463 PF04317.12 gi|154150258|ref|YP_001403876.1| - 0.014 14.4 0.0 0.018 14.0 0.0 1.1 1 0 0 1 1 1 0 YcjX-like family, DUF463 cobW PF02492.19 gi|154150258|ref|YP_001403876.1| - 0.034 13.7 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|154150258|ref|YP_001403876.1| - 0.074 13.1 0.1 0.15 12.2 0.1 1.6 1 1 1 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|154150258|ref|YP_001403876.1| - 0.078 12.9 0.1 0.094 12.6 0.1 1.5 1 1 0 1 1 1 0 NTPase ATPase_2 PF01637.18 gi|154150258|ref|YP_001403876.1| - 0.11 12.4 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|154150258|ref|YP_001403876.1| - 0.16 11.7 0.2 1.4 8.7 0.1 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain TBPIP PF07106.13 gi|154150259|ref|YP_001403877.1| - 0.049 13.6 0.5 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain L31 PF09784.9 gi|154150259|ref|YP_001403877.1| - 0.44 11.0 3.5 13 6.3 0.8 2.5 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L31 DDE_Tnp_1 PF01609.21 gi|154150260|ref|YP_001403878.1| - 2.6e-07 30.5 0.0 5.4e-07 29.5 0.0 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|154150261|ref|YP_001403879.1| - 1e-05 25.3 0.8 0.00018 21.2 0.8 2.3 1 1 0 1 1 1 1 Transposase DDE domain HicB_lk_antitox PF15919.5 gi|154150262|ref|YP_001403880.1| - 3.9e-10 39.9 0.0 5e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HTH_17 PF12728.7 gi|154150263|ref|YP_001403881.1| - 2.8e-14 53.0 0.3 5e-14 52.2 0.1 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.16 gi|154150263|ref|YP_001403881.1| - 0.00023 21.2 0.0 0.00033 20.7 0.0 1.2 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 gi|154150263|ref|YP_001403881.1| - 0.0031 17.3 0.0 0.0064 16.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|154150263|ref|YP_001403881.1| - 0.0048 16.6 0.0 0.0092 15.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MerR_1 PF13411.6 gi|154150263|ref|YP_001403881.1| - 0.015 15.4 0.1 0.025 14.7 0.1 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein YdaS_antitoxin PF15943.5 gi|154150263|ref|YP_001403881.1| - 0.058 13.3 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_1_2 PF13022.6 gi|154150263|ref|YP_001403881.1| - 0.092 12.9 0.1 0.25 11.5 0.0 1.6 1 1 1 2 2 2 0 Helix-turn-helix of insertion element transposase Resolvase PF00239.21 gi|154150264|ref|YP_001403882.1| - 3.3e-28 98.6 0.1 4.9e-28 98.1 0.1 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_7 PF02796.15 gi|154150264|ref|YP_001403882.1| - 0.0021 18.1 0.3 0.006 16.6 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_psq PF05225.16 gi|154150264|ref|YP_001403882.1| - 0.027 14.2 0.3 0.086 12.6 0.1 1.9 1 1 1 2 2 2 0 helix-turn-helix, Psq domain Phage_integrase PF00589.22 gi|154150265|ref|YP_001403883.1| - 1.5e-36 125.8 0.0 2.2e-36 125.3 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|154150265|ref|YP_001403883.1| - 3.2e-06 27.5 2.1 3.2e-06 27.5 2.1 2.6 2 2 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|154150265|ref|YP_001403883.1| - 1.1e-05 25.6 3.8 0.064 13.6 0.0 2.8 3 0 0 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|154150265|ref|YP_001403883.1| - 0.0029 17.9 0.1 1.3 9.4 0.2 3.0 3 0 0 3 3 3 1 Phage integrase SAM-like domain Ion_trans_2 PF07885.16 gi|154150268|ref|YP_001403886.1| - 7.2e-17 61.1 7.9 1.5e-16 60.1 7.9 1.5 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.31 gi|154150268|ref|YP_001403886.1| - 0.00014 21.1 1.4 0.00026 20.3 1.4 1.4 1 0 0 1 1 1 1 Ion transport protein LysE PF01810.18 gi|154150268|ref|YP_001403886.1| - 0.011 15.2 1.5 0.017 14.6 1.5 1.4 1 0 0 1 1 1 0 LysE type translocator CoA_binding PF02629.19 gi|154150269|ref|YP_001403887.1| - 1.7e-22 79.9 3.2 1.8e-21 76.6 1.9 2.5 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|154150269|ref|YP_001403887.1| - 3.7e-14 52.8 0.8 3e-13 49.9 0.8 2.1 1 1 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.6 gi|154150269|ref|YP_001403887.1| - 2.4e-10 40.9 0.3 3.6e-09 37.1 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.6 gi|154150269|ref|YP_001403887.1| - 1.3e-08 34.7 0.1 2.7e-08 33.7 0.1 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain GFO_IDH_MocA PF01408.22 gi|154150269|ref|YP_001403887.1| - 0.035 14.9 0.8 0.07 14.0 0.3 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.10 gi|154150270|ref|YP_001403888.1| - 5.4e-45 153.4 0.1 1e-44 152.5 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|154150270|ref|YP_001403888.1| - 4.6e-12 46.0 0.8 9.3e-12 45.0 0.8 1.5 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|154150270|ref|YP_001403888.1| - 1.6e-09 37.6 1.0 2.4e-08 33.7 1.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|154150270|ref|YP_001403888.1| - 0.012 15.2 0.7 0.048 13.1 0.1 2.0 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|154150270|ref|YP_001403888.1| - 0.012 15.4 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TetR_N PF00440.23 gi|154150270|ref|YP_001403888.1| - 0.041 13.7 0.1 34 4.3 0.0 3.9 4 0 0 4 4 4 0 Bacterial regulatory proteins, tetR family POR PF01558.18 gi|154150271|ref|YP_001403889.1| - 1.1e-25 90.7 0.4 1.4e-25 90.4 0.4 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|154150272|ref|YP_001403890.1| - 5.7e-39 133.4 0.2 7.8e-39 132.9 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|154150273|ref|YP_001403891.1| - 1.6e-74 250.5 0.4 2.1e-74 250.2 0.4 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|154150273|ref|YP_001403891.1| - 2.4e-14 53.5 0.0 4.7e-14 52.5 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|154150273|ref|YP_001403891.1| - 8.2e-05 22.3 0.4 0.00015 21.4 0.4 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|154150274|ref|YP_001403892.1| - 1.1e-10 40.9 11.0 1.1e-06 28.2 1.3 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154150274|ref|YP_001403892.1| - 6.7e-10 39.4 9.3 4e-08 33.7 10.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154150274|ref|YP_001403892.1| - 2.2e-08 33.8 14.4 4.1e-06 26.6 1.3 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|154150274|ref|YP_001403892.1| - 2.9e-08 33.3 13.9 2.3e-05 24.2 1.6 3.2 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154150274|ref|YP_001403892.1| - 6.6e-08 32.6 6.8 6.2e-05 23.0 0.9 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150274|ref|YP_001403892.1| - 8e-08 32.3 12.0 7.8e-07 29.1 12.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150274|ref|YP_001403892.1| - 9.9e-07 28.8 8.5 0.00024 21.2 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154150274|ref|YP_001403892.1| - 1.8e-05 25.6 11.1 0.002 19.0 1.8 2.6 2 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|154150274|ref|YP_001403892.1| - 0.00053 20.3 18.1 0.074 13.6 4.2 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|154150274|ref|YP_001403892.1| - 0.004 17.8 1.1 0.004 17.8 1.1 2.7 2 2 2 4 4 4 1 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|154150274|ref|YP_001403892.1| - 0.0054 17.6 3.4 0.0054 17.6 3.4 3.0 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|154150274|ref|YP_001403892.1| - 0.034 14.6 12.3 3.7 8.1 8.4 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154150274|ref|YP_001403892.1| - 0.053 14.1 13.7 1.9 9.1 8.6 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|154150274|ref|YP_001403892.1| - 0.072 13.2 5.3 0.42 10.8 5.3 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154150274|ref|YP_001403892.1| - 0.22 12.1 12.7 3 8.4 6.9 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fumerase_C PF05683.12 gi|154150275|ref|YP_001403893.1| - 1.6e-35 122.3 0.0 1.9e-35 122.1 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 gi|154150276|ref|YP_001403894.1| - 3.3e-87 292.3 0.1 3.8e-87 292.2 0.1 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Hormone_1 PF00103.20 gi|154150276|ref|YP_001403894.1| - 0.028 14.2 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 Somatotropin hormone family Ribosomal_L16 PF00252.18 gi|154150277|ref|YP_001403895.1| - 1.1e-33 116.0 0.1 1.7e-33 115.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e ABC_tran PF00005.27 gi|154150278|ref|YP_001403896.1| - 8e-31 107.4 0.0 1.2e-30 106.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154150278|ref|YP_001403896.1| - 7.9e-09 35.7 0.2 0.002 18.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|154150278|ref|YP_001403896.1| - 2.3e-07 31.3 0.1 1.4e-06 28.7 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|154150278|ref|YP_001403896.1| - 6.8e-05 22.4 0.0 0.0039 16.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|154150278|ref|YP_001403896.1| - 0.00011 22.2 0.1 0.0017 18.3 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase ATPase_2 PF01637.18 gi|154150278|ref|YP_001403896.1| - 0.0012 18.8 0.0 0.0065 16.4 0.0 1.9 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|154150278|ref|YP_001403896.1| - 0.0013 19.3 0.1 0.0018 18.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|154150278|ref|YP_001403896.1| - 0.0015 19.0 0.2 0.0034 17.8 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|154150278|ref|YP_001403896.1| - 0.0016 18.7 0.2 0.0043 17.3 0.2 1.9 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|154150278|ref|YP_001403896.1| - 0.0025 17.8 0.0 0.0053 16.7 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|154150278|ref|YP_001403896.1| - 0.0036 17.9 0.0 0.014 15.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|154150278|ref|YP_001403896.1| - 0.0044 17.0 0.2 0.014 15.3 0.1 1.9 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.6 gi|154150278|ref|YP_001403896.1| - 0.0091 16.3 1.4 0.028 14.7 0.5 2.0 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|154150278|ref|YP_001403896.1| - 0.0099 15.6 0.0 0.23 11.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|154150278|ref|YP_001403896.1| - 0.013 15.3 0.0 0.07 12.9 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|154150278|ref|YP_001403896.1| - 0.021 14.6 0.0 0.036 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|154150278|ref|YP_001403896.1| - 0.037 13.8 0.2 0.15 11.8 0.0 2.1 3 0 0 3 3 2 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|154150278|ref|YP_001403896.1| - 0.039 14.0 0.0 0.18 11.9 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|154150278|ref|YP_001403896.1| - 0.044 13.8 0.1 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|154150278|ref|YP_001403896.1| - 0.064 12.4 0.0 0.14 11.3 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain PhoH PF02562.16 gi|154150278|ref|YP_001403896.1| - 0.11 12.0 0.0 0.34 10.3 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.6 gi|154150278|ref|YP_001403896.1| - 0.11 12.2 0.3 0.31 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|154150278|ref|YP_001403896.1| - 0.11 12.6 0.0 0.25 11.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain T2SSE PF00437.20 gi|154150278|ref|YP_001403896.1| - 0.11 11.5 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|154150278|ref|YP_001403896.1| - 0.11 12.8 0.2 0.34 11.2 0.2 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|154150278|ref|YP_001403896.1| - 0.11 12.7 0.1 0.42 10.9 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|154150278|ref|YP_001403896.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|154150278|ref|YP_001403896.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|154150278|ref|YP_001403896.1| - 0.14 12.6 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.26 gi|154150278|ref|YP_001403896.1| - 0.16 11.7 0.0 0.71 9.5 0.0 2.0 2 1 1 3 3 3 0 Sigma-54 interaction domain PduV-EutP PF10662.9 gi|154150278|ref|YP_001403896.1| - 0.17 11.6 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.6 gi|154150278|ref|YP_001403896.1| - 1.1 9.4 3.1 1.4 9.1 0.1 2.4 2 1 0 3 3 3 0 AAA domain BPD_transp_1 PF00528.22 gi|154150279|ref|YP_001403897.1| - 1.3e-22 80.5 14.6 2.4e-22 79.6 14.6 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SecE PF00584.20 gi|154150279|ref|YP_001403897.1| - 0.28 11.1 0.2 0.28 11.1 0.2 2.8 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex NMT1_2 PF13379.6 gi|154150280|ref|YP_001403898.1| - 5.3e-27 95.1 1.9 7.7e-14 52.0 0.0 2.5 2 1 1 3 3 3 2 NMT1-like family NMT1 PF09084.11 gi|154150280|ref|YP_001403898.1| - 2.6e-05 24.3 0.0 0.00043 20.3 0.0 2.6 2 1 0 2 2 2 1 NMT1/THI5 like HTH_3 PF01381.22 gi|154150281|ref|YP_001403899.1| - 1.8e-08 34.3 0.0 3.7e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 gi|154150281|ref|YP_001403899.1| - 4.4e-05 23.8 0.1 8.3e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 gi|154150281|ref|YP_001403899.1| - 6.3e-05 22.9 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PrpR_N PF06506.11 gi|154150281|ref|YP_001403899.1| - 7.3e-05 22.4 0.1 0.00011 21.8 0.1 1.2 1 0 0 1 1 1 1 Propionate catabolism activator HTH_31 PF13560.6 gi|154150281|ref|YP_001403899.1| - 0.00086 19.6 0.0 0.0019 18.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|154150281|ref|YP_001403899.1| - 0.018 15.2 0.0 0.034 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_37 PF13744.6 gi|154150281|ref|YP_001403899.1| - 0.033 14.1 0.1 0.07 13.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|154150281|ref|YP_001403899.1| - 0.095 12.3 0.3 0.25 10.9 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TetR_N PF00440.23 gi|154150281|ref|YP_001403899.1| - 0.1 12.4 0.0 0.72 9.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family SCAB-ABD PF16711.5 gi|154150281|ref|YP_001403899.1| - 0.13 12.2 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 Actin-binding domain of plant-specific actin-binding protein Lyase_1 PF00206.20 gi|154150282|ref|YP_001403900.1| - 1.3e-50 172.6 0.0 2e-50 172.0 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|154150282|ref|YP_001403900.1| - 2.7e-17 63.3 0.1 7.5e-17 61.9 0.1 1.8 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Katanin_con80 PF13925.6 gi|154150282|ref|YP_001403900.1| - 0.039 14.0 1.8 0.039 14.0 0.3 1.8 2 0 0 2 2 2 0 con80 domain of Katanin DUF1048 PF06304.11 gi|154150282|ref|YP_001403900.1| - 0.13 12.7 0.0 0.36 11.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1048) Asparaginase PF00710.20 gi|154150283|ref|YP_001403901.1| - 8e-58 195.1 3.1 8.3e-58 195.1 1.7 1.6 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|154150283|ref|YP_001403901.1| - 1e-28 99.8 0.3 3.3e-28 98.2 0.1 1.9 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|154150283|ref|YP_001403901.1| - 0.0021 17.3 0.0 0.0039 16.5 0.0 1.4 1 0 0 1 1 1 1 GatD N-terminal domain GatB_N PF02934.15 gi|154150284|ref|YP_001403902.1| - 8e-62 209.1 0.0 1.1e-61 208.6 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|154150284|ref|YP_001403902.1| - 3.2e-17 62.6 0.0 8.2e-16 58.0 0.0 2.6 2 0 0 2 2 2 1 GAD domain GatB_Yqey PF02637.18 gi|154150284|ref|YP_001403902.1| - 9.9e-11 41.7 0.4 3.7e-10 39.9 0.4 2.0 1 1 0 1 1 1 1 GatB domain YqeY PF09424.10 gi|154150284|ref|YP_001403902.1| - 5.5e-05 23.3 0.6 5.5e-05 23.3 0.6 2.3 3 0 0 3 3 3 1 Yqey-like protein Nab2 PF11517.8 gi|154150284|ref|YP_001403902.1| - 0.12 12.7 0.0 3.2 8.1 0.0 2.6 3 0 0 3 3 3 0 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2) DUF1254 PF06863.12 gi|154150287|ref|YP_001403905.1| - 1.7e-31 109.0 1.1 1.6e-30 105.9 0.3 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1254) DUF1214 PF06742.11 gi|154150287|ref|YP_001403905.1| - 9.7e-30 103.2 0.1 2.1e-29 102.1 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1214) YopE_N PF09020.10 gi|154150288|ref|YP_001403906.1| - 0.019 15.2 1.6 0.042 14.1 1.6 1.6 1 1 0 1 1 1 0 YopE, N terminal RhodobacterPufX PF11511.8 gi|154150288|ref|YP_001403906.1| - 0.15 11.6 0.1 0.34 10.6 0.1 1.5 1 0 0 1 1 1 0 Intrinsic membrane protein PufX PEGA PF08308.11 gi|154150289|ref|YP_001403907.1| - 2.3e-10 40.2 0.4 0.00061 19.6 0.0 3.2 2 1 0 2 2 2 2 PEGA domain CarboxypepD_reg PF13620.6 gi|154150289|ref|YP_001403907.1| - 1.3e-07 31.8 12.7 7.4e-06 26.2 2.1 2.9 3 1 0 3 3 3 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|154150289|ref|YP_001403907.1| - 6.6e-05 22.8 1.0 0.32 11.0 0.3 2.3 2 0 0 2 2 2 2 CarboxypepD_reg-like domain DUF1533 PF07550.11 gi|154150289|ref|YP_001403907.1| - 0.13 12.2 0.2 0.51 10.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1533) Glyco_hydro_98M PF08306.11 gi|154150289|ref|YP_001403907.1| - 0.15 11.4 0.1 0.21 10.8 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 98 GtrA PF04138.14 gi|154150290|ref|YP_001403908.1| - 3.4e-26 91.8 15.8 3.8e-26 91.6 15.8 1.0 1 0 0 1 1 1 1 GtrA-like protein DcuA_DcuB PF03605.14 gi|154150290|ref|YP_001403908.1| - 0.016 14.1 1.1 0.017 14.1 1.1 1.1 1 0 0 1 1 1 0 Anaerobic c4-dicarboxylate membrane transporter PMT_2 PF13231.6 gi|154150291|ref|YP_001403909.1| - 1.7e-32 112.8 18.8 1.7e-32 112.8 18.8 2.9 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.14 gi|154150291|ref|YP_001403909.1| - 0.0046 15.9 15.0 0.0046 15.9 15.0 1.7 2 0 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit DUF2723 PF11028.8 gi|154150291|ref|YP_001403909.1| - 0.79 9.6 13.8 0.11 12.4 8.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2723) FHA PF00498.26 gi|154150292|ref|YP_001403910.1| - 3.2e-11 43.4 0.0 6.8e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|154150292|ref|YP_001403910.1| - 1e-09 38.6 0.0 7.1e-09 35.9 0.0 2.1 1 1 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain HTH_20 PF12840.7 gi|154150292|ref|YP_001403910.1| - 7.8e-08 32.3 0.0 1.6e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|154150292|ref|YP_001403910.1| - 6.1e-07 29.3 0.0 1.2e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|154150292|ref|YP_001403910.1| - 4.6e-06 26.4 0.3 1.7e-05 24.6 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|154150292|ref|YP_001403910.1| - 0.00013 21.8 0.0 0.00064 19.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|154150292|ref|YP_001403910.1| - 0.0014 19.1 0.0 0.0033 17.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|154150292|ref|YP_001403910.1| - 0.0021 17.9 0.0 0.005 16.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|154150292|ref|YP_001403910.1| - 0.0066 16.2 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Dimerisation2 PF16864.5 gi|154150292|ref|YP_001403910.1| - 0.0074 16.3 0.0 0.02 14.9 0.0 1.7 1 0 0 1 1 1 1 Dimerisation domain Rrf2 PF02082.20 gi|154150292|ref|YP_001403910.1| - 0.029 14.7 0.3 0.067 13.6 0.1 1.7 2 0 0 2 2 1 0 Transcriptional regulator HTH_24 PF13412.6 gi|154150292|ref|YP_001403910.1| - 0.031 13.8 0.1 0.087 12.4 0.1 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Pkinase PF00069.25 gi|154150293|ref|YP_001403911.1| - 2.3e-36 125.5 0.0 3.1e-36 125.1 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|154150293|ref|YP_001403911.1| - 1.8e-24 86.4 0.0 2.5e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase NosD PF05048.13 gi|154150293|ref|YP_001403911.1| - 1.4e-23 83.4 5.6 2.3e-23 82.7 5.6 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|154150293|ref|YP_001403911.1| - 8.9e-08 32.1 14.0 9.4e-08 32.1 12.3 1.6 1 1 0 1 1 1 1 Right handed beta helix region Kinase-like PF14531.6 gi|154150293|ref|YP_001403911.1| - 0.004 16.5 0.0 1.2 8.4 0.0 2.3 2 0 0 2 2 2 2 Kinase-like APH PF01636.23 gi|154150293|ref|YP_001403911.1| - 0.011 15.6 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|154150293|ref|YP_001403911.1| - 0.16 10.7 0.0 0.23 10.2 0.0 1.1 1 0 0 1 1 1 0 Fungal protein kinase DUF4229 PF14012.6 gi|154150293|ref|YP_001403911.1| - 0.33 11.1 2.6 21 5.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) PKD PF00801.20 gi|154150296|ref|YP_001403914.1| - 5.9e-68 224.7 65.6 1.4e-14 53.7 8.4 5.6 5 0 0 5 5 5 5 PKD domain PKD_3 PF16820.5 gi|154150296|ref|YP_001403914.1| - 1.8e-10 40.4 20.1 0.047 13.4 0.3 5.8 6 0 0 6 6 6 5 PKD-like domain MG2 PF01835.19 gi|154150296|ref|YP_001403914.1| - 8.1e-08 32.6 18.0 0.82 10.2 0.1 5.2 1 1 4 5 5 5 4 MG2 domain MBG PF17883.1 gi|154150296|ref|YP_001403914.1| - 0.018 15.6 44.3 1.2 9.8 2.3 6.3 1 1 5 6 6 6 0 MBG domain Y_Y_Y PF07495.13 gi|154150296|ref|YP_001403914.1| - 0.019 14.9 15.0 1.3 9.0 1.6 5.2 5 0 0 5 5 5 0 Y_Y_Y domain ChitinaseA_N PF08329.10 gi|154150296|ref|YP_001403914.1| - 0.02 14.5 17.8 3.1 7.4 0.4 5.2 2 2 1 5 5 5 0 Chitinase A, N-terminal domain Invasin_D3 PF09134.10 gi|154150296|ref|YP_001403914.1| - 0.078 13.3 59.6 1.4 9.3 6.4 6.0 1 1 4 6 6 6 0 Invasin, domain 3 DUF4064 PF13273.6 gi|154150296|ref|YP_001403914.1| - 0.14 12.4 1.8 0.46 10.8 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) MCR_beta_N PF02783.15 gi|154150296|ref|YP_001403914.1| - 0.66 9.6 8.3 0.56 9.8 0.3 3.3 2 1 2 4 4 4 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain Cadherin PF00028.17 gi|154150296|ref|YP_001403914.1| - 3.8 8.0 19.8 26 5.4 0.2 6.6 8 0 0 8 8 8 0 Cadherin domain FlgD_ig PF13860.6 gi|154150296|ref|YP_001403914.1| - 5.9 6.8 26.4 2.3 8.1 0.4 6.8 6 1 0 6 6 6 0 FlgD Ig-like domain MacB_PCD PF12704.7 gi|154150298|ref|YP_001403916.1| - 1.3e-19 71.4 6.8 1.3e-19 71.4 6.8 2.5 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|154150298|ref|YP_001403916.1| - 1.2e-11 44.9 12.6 9.5e-11 42.0 4.3 3.2 3 0 0 3 3 3 2 FtsX-like permease family DUF4134 PF13572.6 gi|154150298|ref|YP_001403916.1| - 0.015 15.5 0.2 0.015 15.5 0.2 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4134) ABC_tran PF00005.27 gi|154150299|ref|YP_001403917.1| - 7.6e-32 110.7 0.0 1e-31 110.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|154150299|ref|YP_001403917.1| - 7.2e-08 32.1 0.0 0.0036 16.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|154150299|ref|YP_001403917.1| - 2.3e-05 24.0 0.8 3.8e-05 23.3 0.0 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|154150299|ref|YP_001403917.1| - 2.3e-05 24.3 0.0 0.006 16.4 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|154150299|ref|YP_001403917.1| - 0.0003 20.7 0.0 0.00061 19.7 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|154150299|ref|YP_001403917.1| - 0.00033 20.5 0.0 0.27 10.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain Rad17 PF03215.15 gi|154150299|ref|YP_001403917.1| - 0.0013 18.6 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|154150299|ref|YP_001403917.1| - 0.0043 17.1 0.0 0.03 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|154150299|ref|YP_001403917.1| - 0.0089 16.3 0.1 0.026 14.8 0.0 1.8 2 1 0 2 2 2 1 AAA domain RNA12 PF10443.9 gi|154150299|ref|YP_001403917.1| - 0.016 14.0 0.0 0.049 12.4 0.0 1.7 1 1 1 2 2 2 0 RNA12 protein MMR_HSR1 PF01926.23 gi|154150299|ref|YP_001403917.1| - 0.017 15.2 0.2 0.037 14.1 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|154150299|ref|YP_001403917.1| - 0.02 15.3 0.0 0.09 13.2 0.0 2.0 2 0 0 2 2 2 0 RNA helicase IstB_IS21 PF01695.17 gi|154150299|ref|YP_001403917.1| - 0.02 14.6 0.0 0.084 12.6 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|154150299|ref|YP_001403917.1| - 0.024 15.2 0.1 0.094 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|154150299|ref|YP_001403917.1| - 0.026 14.2 0.0 0.078 12.7 0.0 1.8 2 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|154150299|ref|YP_001403917.1| - 0.035 14.0 0.0 0.06 13.3 0.0 1.5 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|154150299|ref|YP_001403917.1| - 0.04 13.1 0.0 0.083 12.1 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|154150299|ref|YP_001403917.1| - 0.04 14.5 0.0 0.12 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|154150299|ref|YP_001403917.1| - 0.05 12.5 0.0 0.066 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_28 PF13521.6 gi|154150299|ref|YP_001403917.1| - 0.051 13.8 0.0 0.32 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|154150299|ref|YP_001403917.1| - 0.052 13.3 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|154150299|ref|YP_001403917.1| - 0.054 12.9 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_16 PF13191.6 gi|154150299|ref|YP_001403917.1| - 0.071 13.5 0.0 0.089 13.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|154150299|ref|YP_001403917.1| - 0.1 12.2 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|154150299|ref|YP_001403917.1| - 0.11 11.7 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_7 PF12775.7 gi|154150299|ref|YP_001403917.1| - 0.11 12.0 0.0 0.25 10.8 0.0 1.6 2 0 0 2 2 1 0 P-loop containing dynein motor region Cytidylate_kin PF02224.18 gi|154150299|ref|YP_001403917.1| - 0.12 12.1 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Cytidylate kinase AAA_25 PF13481.6 gi|154150299|ref|YP_001403917.1| - 0.13 11.8 0.0 0.38 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|154150299|ref|YP_001403917.1| - 0.18 11.6 0.1 0.41 10.4 0.1 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Mut7-C PF01927.16 gi|154150301|ref|YP_001403919.1| - 8.1e-36 123.3 0.0 9.2e-36 123.1 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|154150301|ref|YP_001403919.1| - 0.0024 17.6 0.0 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_10 PF18478.1 gi|154150301|ref|YP_001403919.1| - 0.0088 16.2 0.0 0.018 15.3 0.0 1.5 2 0 0 2 2 2 1 PIN like domain Radical_SAM PF04055.21 gi|154150302|ref|YP_001403920.1| - 2.4e-17 63.8 0.0 4.5e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily zf-ribbon_3 PF13248.6 gi|154150302|ref|YP_001403920.1| - 0.023 14.1 6.2 0.46 10.0 0.0 3.5 4 0 0 4 4 4 0 zinc-ribbon domain DZR PF12773.7 gi|154150302|ref|YP_001403920.1| - 0.11 12.5 0.4 0.11 12.5 0.4 3.8 3 2 0 3 3 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|154150302|ref|YP_001403920.1| - 0.13 12.4 8.5 3.5 7.8 0.0 4.1 4 0 0 4 4 4 0 Zinc ribbon domain Fer4_12 PF13353.6 gi|154150302|ref|YP_001403920.1| - 0.16 12.3 0.4 0.6 10.4 0.4 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.19 gi|154150302|ref|YP_001403920.1| - 0.2 11.5 0.0 0.2 11.5 0.0 2.9 3 0 0 3 3 2 0 Topoisomerase DNA binding C4 zinc finger RNA_POL_M_15KD PF02150.16 gi|154150302|ref|YP_001403920.1| - 0.28 11.1 0.1 0.28 11.1 0.1 3.1 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit NCD3G PF07562.14 gi|154150302|ref|YP_001403920.1| - 1.1 9.3 6.8 1.3 9.0 0.1 3.2 3 0 0 3 3 3 0 Nine Cysteines Domain of family 3 GPCR TF_Zn_Ribbon PF08271.12 gi|154150302|ref|YP_001403920.1| - 3.4 7.3 0.0 3.4 7.3 0.0 3.2 4 0 0 4 4 4 0 TFIIB zinc-binding YhfH PF14149.6 gi|154150302|ref|YP_001403920.1| - 6.3 6.9 7.7 1.2 9.2 0.1 3.0 3 0 0 3 3 2 0 YhfH-like protein zinc_ribbon_2 PF13240.6 gi|154150302|ref|YP_001403920.1| - 7.9 6.3 14.5 5.4 6.9 0.0 4.5 5 0 0 5 5 5 0 zinc-ribbon domain AA_kinase PF00696.28 gi|154150303|ref|YP_001403921.1| - 1.9e-24 86.6 3.6 5.7e-24 85.0 3.6 1.7 1 1 0 1 1 1 1 Amino acid kinase family TMP-TENI PF02581.17 gi|154150303|ref|YP_001403921.1| - 0.0099 15.2 0.3 1.2 8.5 0.0 2.5 3 0 0 3 3 3 2 Thiamine monophosphate synthase Mur_ligase_C PF02875.21 gi|154150303|ref|YP_001403921.1| - 0.11 12.8 0.1 6.8 7.0 0.0 2.7 2 1 1 3 3 3 0 Mur ligase family, glutamate ligase domain HhH-GPD PF00730.25 gi|154150304|ref|YP_001403922.1| - 2.8e-21 76.0 0.0 4.3e-21 75.4 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|154150304|ref|YP_001403922.1| - 1.8e-09 37.0 0.0 4.7e-09 35.7 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|154150304|ref|YP_001403922.1| - 0.00016 21.9 4.6 0.00032 20.9 4.6 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|154150304|ref|YP_001403922.1| - 0.0022 18.6 0.0 0.028 15.0 0.0 2.7 3 1 0 3 3 3 1 Helix-hairpin-helix domain Zn_clus PF00172.18 gi|154150304|ref|YP_001403922.1| - 0.13 12.4 1.4 0.2 11.8 1.4 1.3 1 0 0 1 1 1 0 Fungal Zn(2)-Cys(6) binuclear cluster domain HRDC PF00570.23 gi|154150304|ref|YP_001403922.1| - 0.2 11.7 0.1 0.6 10.1 0.0 1.8 2 0 0 2 2 2 0 HRDC domain PHO4 PF01384.20 gi|154150305|ref|YP_001403923.1| - 4.9e-91 305.3 41.7 2.1e-90 303.2 41.7 1.8 1 1 0 1 1 1 1 Phosphate transporter family PhoU_div PF01865.16 gi|154150306|ref|YP_001403924.1| - 9.5e-19 67.6 7.8 1.2e-18 67.2 7.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|154150306|ref|YP_001403924.1| - 0.19 12.2 6.7 0.2 12.1 2.0 2.6 1 1 2 3 3 3 0 PhoU domain PHO4 PF01384.20 gi|154150307|ref|YP_001403925.1| - 2.1e-69 234.2 58.2 8.3e-50 169.7 25.3 2.7 1 1 1 2 2 2 2 Phosphate transporter family DUF962 PF06127.11 gi|154150307|ref|YP_001403925.1| - 6.1 7.0 8.2 0.89 9.7 1.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF962) PhoU_div PF01865.16 gi|154150308|ref|YP_001403926.1| - 2.6e-15 56.3 1.6 3.1e-15 56.1 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 HAMP PF00672.25 gi|154150308|ref|YP_001403926.1| - 0.022 15.1 0.1 0.43 11.0 0.0 2.4 2 0 0 2 2 2 0 HAMP domain QRPTase_C PF01729.19 gi|154150309|ref|YP_001403927.1| - 4.5e-24 85.1 0.0 6.5e-24 84.6 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|154150309|ref|YP_001403927.1| - 2e-08 34.2 0.0 5.9e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain PNP_UDP_1 PF01048.20 gi|154150310|ref|YP_001403928.1| - 6.6e-25 87.7 1.2 8.7e-25 87.3 1.2 1.2 1 0 0 1 1 1 1 Phosphorylase superfamily Amidohydro_1 PF01979.20 gi|154150311|ref|YP_001403929.1| - 1.2e-68 232.0 0.1 1.5e-68 231.7 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|154150311|ref|YP_001403929.1| - 4.8e-15 56.0 0.3 3.7e-12 46.5 0.0 2.6 2 1 1 3 3 3 2 Amidohydrolase family A_deaminase PF00962.22 gi|154150311|ref|YP_001403929.1| - 0.001 18.5 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase MFS_1 PF07690.16 gi|154150312|ref|YP_001403930.1| - 4.5e-60 203.4 48.3 4.5e-60 203.4 48.3 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|154150312|ref|YP_001403930.1| - 6.1e-08 32.0 37.8 1.2e-07 31.0 17.1 3.0 2 2 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|154150312|ref|YP_001403930.1| - 5.3e-07 28.4 7.2 5.3e-07 28.4 7.2 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.6 gi|154150312|ref|YP_001403930.1| - 7.2e-07 28.1 43.8 0.0025 16.5 10.1 2.9 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|154150312|ref|YP_001403930.1| - 7.3e-06 25.1 35.7 1.4e-05 24.1 11.3 2.6 2 1 1 3 3 3 3 MFS_1 like family AMP-binding PF00501.28 gi|154150313|ref|YP_001403931.1| - 1.4e-108 363.2 0.2 1.7e-108 363.0 0.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|154150313|ref|YP_001403931.1| - 3.5e-17 63.1 1.5 6.6e-17 62.3 0.2 2.2 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.6 gi|154150313|ref|YP_001403931.1| - 0.0044 17.3 0.0 0.0092 16.3 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PhzC-PhzF PF02567.16 gi|154150314|ref|YP_001403932.1| - 1.1e-62 212.1 0.0 2.1e-62 211.2 0.0 1.4 1 1 0 1 1 1 1 Phenazine biosynthesis-like protein Fae PF08714.11 gi|154150315|ref|YP_001403933.1| - 2.1e-63 213.0 0.1 4.5e-63 211.9 0.1 1.6 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|154150315|ref|YP_001403933.1| - 2.4e-23 82.9 3.5 5e-23 81.9 3.5 1.6 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family QRPTase_C PF01729.19 gi|154150315|ref|YP_001403933.1| - 0.0027 17.5 0.5 0.0027 17.5 0.5 1.6 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Ribul_P_3_epim PF00834.19 gi|154150315|ref|YP_001403933.1| - 0.004 16.6 2.1 0.045 13.1 2.1 2.3 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.18 gi|154150315|ref|YP_001403933.1| - 0.027 13.5 0.2 0.076 12.0 0.2 1.6 1 1 0 1 1 1 0 FMN-dependent dehydrogenase AtuA PF07287.11 gi|154150315|ref|YP_001403933.1| - 0.039 12.7 0.4 0.062 12.0 0.4 1.4 1 0 0 1 1 1 0 Acyclic terpene utilisation family protein AtuA Abhydrolase_1 PF00561.20 gi|154150320|ref|YP_001403938.1| - 5.6e-19 68.8 0.4 3.8e-16 59.5 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|154150320|ref|YP_001403938.1| - 2.6e-12 46.5 0.1 1.8e-11 43.8 0.1 1.9 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|154150320|ref|YP_001403938.1| - 2.4e-06 28.3 0.1 3.6e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family COesterase PF00135.28 gi|154150321|ref|YP_001403939.1| - 2.6e-120 402.7 0.0 3.7e-120 402.2 0.0 1.1 1 0 0 1 1 1 1 Carboxylesterase family Abhydrolase_3 PF07859.13 gi|154150321|ref|YP_001403939.1| - 2.9e-06 27.3 1.1 0.00011 22.2 0.1 2.2 2 0 0 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|154150321|ref|YP_001403939.1| - 0.001 18.6 0.0 0.0021 17.6 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family PepSY PF03413.19 gi|154150322|ref|YP_001403940.1| - 9.3e-08 32.5 2.7 0.0074 16.8 0.0 4.2 4 1 0 4 4 4 3 Peptidase propeptide and YPEB domain Lactamase_B PF00753.27 gi|154150323|ref|YP_001403941.1| - 6.4e-25 88.3 2.2 8.5e-25 87.9 2.0 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|154150323|ref|YP_001403941.1| - 5.3e-05 22.8 0.1 8.8e-05 22.1 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|154150323|ref|YP_001403941.1| - 0.14 12.0 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain PEMT PF04191.13 gi|154150324|ref|YP_001403942.1| - 8e-18 64.8 1.4 8e-18 64.8 1.4 2.6 3 0 0 3 3 3 1 Phospholipid methyltransferase ICMT PF04140.14 gi|154150324|ref|YP_001403942.1| - 3.8e-12 46.4 0.5 3.8e-12 46.4 0.5 1.8 3 0 0 3 3 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.17 gi|154150324|ref|YP_001403942.1| - 0.00039 19.3 2.3 0.0012 17.7 0.0 2.0 2 0 0 2 2 2 1 Ergosterol biosynthesis ERG4/ERG24 family Steroid_dh PF02544.16 gi|154150324|ref|YP_001403942.1| - 0.035 14.1 4.9 0.012 15.6 1.6 2.1 1 1 0 1 1 1 0 3-oxo-5-alpha-steroid 4-dehydrogenase NnrU PF07298.11 gi|154150324|ref|YP_001403942.1| - 0.038 13.5 8.2 0.17 11.4 8.1 2.1 1 1 0 1 1 1 0 NnrU protein Cytomega_TRL10 PF06084.11 gi|154150324|ref|YP_001403942.1| - 0.15 12.1 0.1 0.29 11.2 0.1 1.5 1 0 0 1 1 1 0 Cytomegalovirus TRL10 protein Gram_pos_anchor PF00746.21 gi|154150324|ref|YP_001403942.1| - 0.16 12.0 0.6 0.16 12.0 0.6 2.4 3 0 0 3 3 3 0 LPXTG cell wall anchor motif MLANA PF14991.6 gi|154150324|ref|YP_001403942.1| - 0.2 12.0 0.4 0.5 10.7 0.4 1.7 1 0 0 1 1 1 0 Protein melan-A OAD_gamma PF04277.13 gi|154150324|ref|YP_001403942.1| - 0.55 10.9 3.8 1.3 9.6 0.2 2.9 3 0 0 3 3 3 0 Oxaloacetate decarboxylase, gamma chain EphA2_TM PF14575.6 gi|154150324|ref|YP_001403942.1| - 2.8 8.9 0.0 2.8 8.9 0.0 2.9 3 1 1 4 4 4 0 Ephrin type-A receptor 2 transmembrane domain DUF2721 PF11026.8 gi|154150324|ref|YP_001403942.1| - 3.2 7.6 5.9 1.6 8.7 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) DUF485 PF04341.12 gi|154150324|ref|YP_001403942.1| - 6.5 6.8 17.6 0.89 9.5 2.0 3.3 2 1 1 3 3 3 0 Protein of unknown function, DUF485 NDUF_B4 PF07225.12 gi|154150324|ref|YP_001403942.1| - 7.1 6.5 5.5 34 4.4 1.7 2.3 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) DUF5305 PF17231.2 gi|154150324|ref|YP_001403942.1| - 8 5.8 6.4 13 5.1 0.7 3.1 2 1 1 3 3 3 0 Family of unknown function (DUF5305) SBP_bac_3 PF00497.20 gi|154150325|ref|YP_001403943.1| - 2.3e-39 135.1 0.0 1.5e-38 132.5 0.0 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 PAS_9 PF13426.7 gi|154150325|ref|YP_001403943.1| - 8.3e-13 48.5 0.0 3.6e-12 46.5 0.0 2.2 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|154150325|ref|YP_001403943.1| - 3.2e-09 36.8 0.0 1.5e-08 34.6 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|154150325|ref|YP_001403943.1| - 1.1e-06 29.1 0.0 2.1e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|154150325|ref|YP_001403943.1| - 8.6e-05 22.8 0.0 0.00022 21.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|154150325|ref|YP_001403943.1| - 0.00037 20.7 0.0 0.0011 19.3 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|154150325|ref|YP_001403943.1| - 0.0012 18.8 0.0 0.0044 17.0 0.0 2.0 1 0 0 1 1 1 1 PAS domain DUF3084 PF11283.8 gi|154150325|ref|YP_001403943.1| - 0.082 12.9 0.1 0.25 11.4 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3084) Jnk-SapK_ap_N PF09744.9 gi|154150325|ref|YP_001403943.1| - 2.8 8.1 10.4 0.45 10.7 2.0 2.4 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Jiraiya PF15038.6 gi|154150326|ref|YP_001403944.1| - 1.7 8.1 5.7 1.3 8.4 4.4 1.4 1 1 0 1 1 1 0 Jiraiya Chitin_synth_2 PF03142.15 gi|154150326|ref|YP_001403944.1| - 1.7 7.1 9.3 2.1 6.9 9.3 1.1 1 0 0 1 1 1 0 Chitin synthase DUF2070 PF09843.9 gi|154150326|ref|YP_001403944.1| - 2.6 6.2 9.2 3.1 6.0 9.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Acetyltransf_1 PF00583.25 gi|154150327|ref|YP_001403945.1| - 1.4e-10 41.5 0.0 1.9e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|154150327|ref|YP_001403945.1| - 2.8e-10 40.2 0.0 3.6e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|154150327|ref|YP_001403945.1| - 3.3e-07 30.6 0.0 1e-06 29.0 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|154150327|ref|YP_001403945.1| - 0.00035 20.7 0.0 0.00039 20.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|154150327|ref|YP_001403945.1| - 0.017 15.0 0.0 0.044 13.7 0.0 1.7 1 1 1 2 2 2 0 FR47-like protein Proho_convert PF12177.8 gi|154150327|ref|YP_001403945.1| - 0.38 10.8 1.7 0.81 9.7 1.7 1.5 1 1 0 1 1 1 0 Prohormone convertase enzyme SdpI PF13630.6 gi|154150329|ref|YP_001403947.1| - 0.035 14.2 0.6 0.056 13.6 0.6 1.5 1 1 0 1 1 1 0 SdpI/YhfL protein family 7TM_GPCR_Srb PF02175.16 gi|154150329|ref|YP_001403947.1| - 0.036 13.8 0.6 0.042 13.6 0.6 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srb DUF983 PF06170.12 gi|154150329|ref|YP_001403947.1| - 0.04 14.3 1.8 0.052 14.0 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF983) PEGA PF08308.11 gi|154150330|ref|YP_001403948.1| - 1.1e-42 143.8 27.8 8.5e-14 51.2 0.5 5.5 5 0 0 5 5 5 4 PEGA domain PKD PF00801.20 gi|154150330|ref|YP_001403948.1| - 6.5e-13 48.3 12.7 7.9e-13 48.1 6.2 3.7 3 0 0 3 3 3 1 PKD domain fn3_3 PF14686.6 gi|154150330|ref|YP_001403948.1| - 9.5e-11 41.3 30.7 5.2e-06 26.1 1.6 4.9 3 1 1 4 4 4 3 Polysaccharide lyase family 4, domain II CarboxypepD_reg PF13620.6 gi|154150330|ref|YP_001403948.1| - 7.3e-08 32.6 34.9 0.0015 18.8 0.3 6.3 6 1 1 7 7 7 3 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|154150330|ref|YP_001403948.1| - 9.1e-07 28.8 13.4 0.3 11.1 0.2 5.7 3 2 1 4 4 4 3 CarboxypepD_reg-like domain Y_Y_Y PF07495.13 gi|154150330|ref|YP_001403948.1| - 0.0037 17.2 8.7 6.6 6.8 0.1 4.4 4 0 0 4 4 4 2 Y_Y_Y domain Trypan_PARP PF05887.11 gi|154150330|ref|YP_001403948.1| - 0.0079 16.2 5.4 0.017 15.1 5.4 1.6 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) PapC_N PF13954.6 gi|154150330|ref|YP_001403948.1| - 0.0094 16.0 0.2 2.8 8.0 0.0 3.8 4 1 1 5 5 5 1 PapC N-terminal domain DUF4458 PF14660.6 gi|154150330|ref|YP_001403948.1| - 1.3 9.3 3.6 13 6.1 0.9 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4458) Cupin_2 PF07883.11 gi|154150331|ref|YP_001403949.1| - 2.8e-10 39.8 0.0 6.3e-10 38.6 0.0 1.6 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.19 gi|154150331|ref|YP_001403949.1| - 4e-06 26.8 0.0 5.4e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.12 gi|154150331|ref|YP_001403949.1| - 0.0037 17.0 0.0 0.0037 17.0 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_6 PF12852.7 gi|154150331|ref|YP_001403949.1| - 0.0068 16.1 0.0 0.0082 15.9 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_1 PF00190.22 gi|154150331|ref|YP_001403949.1| - 0.015 15.0 0.1 0.018 14.7 0.1 1.3 1 0 0 1 1 1 0 Cupin ARD PF03079.14 gi|154150331|ref|YP_001403949.1| - 0.03 14.5 0.0 0.03 14.5 0.0 1.1 1 0 0 1 1 1 0 ARD/ARD' family AraC_binding_2 PF14525.6 gi|154150331|ref|YP_001403949.1| - 0.1 12.2 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Lyx_isomer PF07385.12 gi|154150331|ref|YP_001403949.1| - 0.13 11.5 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 D-lyxose isomerase MannoseP_isomer PF01050.18 gi|154150331|ref|YP_001403949.1| - 0.19 11.6 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase E1-E2_ATPase PF00122.20 gi|154150332|ref|YP_001403950.1| - 7.1e-54 182.1 7.0 7.1e-54 182.1 7.0 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|154150332|ref|YP_001403950.1| - 1.6e-46 159.3 7.5 1.6e-46 159.3 7.5 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|154150332|ref|YP_001403950.1| - 7.6e-32 109.6 2.9 4.3e-15 55.9 0.6 3.1 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|154150332|ref|YP_001403950.1| - 3.3e-05 23.7 0.6 0.0028 17.4 0.2 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|154150332|ref|YP_001403950.1| - 0.00066 20.1 0.1 0.0031 17.9 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase FeS_assembly_P PF01883.19 gi|154150332|ref|YP_001403950.1| - 0.12 12.6 3.7 1.4 9.1 0.1 3.5 3 0 0 3 3 3 0 Iron-sulfur cluster assembly protein Fer2_BFD PF04324.15 gi|154150332|ref|YP_001403950.1| - 1.6 9.1 3.7 4.9 7.6 0.4 2.8 2 0 0 2 2 2 0 BFD-like [2Fe-2S] binding domain YHS PF04945.13 gi|154150333|ref|YP_001403951.1| - 4.5e-19 68.3 1.8 4.7e-19 68.2 1.8 1.0 1 0 0 1 1 1 1 YHS domain ATPase-cat_bd PF12156.8 gi|154150333|ref|YP_001403951.1| - 0.0076 17.0 0.1 0.0089 16.7 0.1 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase Arc_trans_TRASH PF08394.10 gi|154150333|ref|YP_001403951.1| - 0.024 15.0 1.8 0.031 14.6 1.8 1.3 1 1 0 1 1 1 0 Archaeal TRASH domain zf-FCS PF06467.14 gi|154150333|ref|YP_001403951.1| - 0.039 13.9 0.8 0.044 13.7 0.8 1.2 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF2179 PF10035.9 gi|154150334|ref|YP_001403952.1| - 2.1e-10 40.2 0.0 3.3e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2179) DoxD PF04173.13 gi|154150334|ref|YP_001403952.1| - 0.00073 19.5 4.9 0.001 19.0 4.9 1.2 1 0 0 1 1 1 1 TQO small subunit DoxD DUF4941 PF16299.5 gi|154150335|ref|YP_001403953.1| - 0.046 13.0 0.0 0.22 10.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4941) TPR_1 PF00515.28 gi|154150336|ref|YP_001403954.1| - 6.6e-21 73.2 7.3 2.5e-05 23.9 0.0 4.1 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154150336|ref|YP_001403954.1| - 1.6e-18 65.2 9.3 0.00014 21.7 0.0 4.1 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154150336|ref|YP_001403954.1| - 6.3e-14 51.0 6.8 0.0009 19.3 0.3 4.1 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154150336|ref|YP_001403954.1| - 3.1e-13 50.1 7.3 0.00056 20.5 2.8 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154150336|ref|YP_001403954.1| - 1.4e-12 47.6 7.7 1.4e-06 28.4 0.3 2.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|154150336|ref|YP_001403954.1| - 6.5e-12 45.0 2.9 0.0056 17.0 0.1 3.7 4 0 0 4 4 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154150336|ref|YP_001403954.1| - 4.8e-11 42.1 4.5 1.8e-06 27.5 0.1 3.4 2 2 1 3 3 3 2 TPR repeat TPR_19 PF14559.6 gi|154150336|ref|YP_001403954.1| - 1.2e-10 41.7 6.4 2.5e-07 31.1 0.7 3.0 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154150336|ref|YP_001403954.1| - 2.4e-09 37.2 9.8 0.0055 17.4 0.2 3.9 1 1 3 4 4 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|154150336|ref|YP_001403954.1| - 2.6e-09 37.2 1.8 0.0013 18.9 0.4 2.1 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|154150336|ref|YP_001403954.1| - 7.7e-09 35.7 8.9 0.0044 17.3 0.5 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154150336|ref|YP_001403954.1| - 2.8e-05 23.8 2.0 0.24 11.5 0.1 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|154150336|ref|YP_001403954.1| - 0.0035 17.8 1.1 1.7 9.1 0.0 2.4 1 1 1 2 2 2 2 Alkyl sulfatase dimerisation TPR_6 PF13174.6 gi|154150336|ref|YP_001403954.1| - 0.0053 17.3 5.4 0.29 11.8 0.3 3.7 4 0 0 4 4 4 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|154150336|ref|YP_001403954.1| - 0.0085 16.1 0.7 2 8.5 0.1 2.5 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.18 gi|154150336|ref|YP_001403954.1| - 0.011 15.8 4.4 0.17 12.0 0.2 3.1 3 1 0 3 3 3 0 MIT (microtubule interacting and transport) domain SRP_TPR_like PF17004.5 gi|154150336|ref|YP_001403954.1| - 0.025 14.6 0.1 0.48 10.4 0.0 2.6 1 1 2 3 3 3 0 Putative TPR-like repeat BTAD PF03704.17 gi|154150336|ref|YP_001403954.1| - 0.087 13.3 3.0 0.12 12.8 1.5 2.0 1 1 1 2 2 2 0 Bacterial transcriptional activator domain TPR_10 PF13374.6 gi|154150336|ref|YP_001403954.1| - 0.15 12.0 6.8 9.4 6.3 0.1 4.1 3 1 1 4 4 4 0 Tetratricopeptide repeat Ferritin PF00210.24 gi|154150337|ref|YP_001403955.1| - 9.5e-44 148.8 2.6 1.1e-43 148.6 2.6 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|154150337|ref|YP_001403955.1| - 0.017 15.5 1.6 0.058 13.8 1.6 1.8 1 1 0 1 1 1 0 Rubrerythrin TPR_11 PF13414.6 gi|154150338|ref|YP_001403956.1| - 6.9e-23 80.1 0.3 3.4e-08 33.0 0.1 3.6 2 1 1 3 3 3 3 TPR repeat Response_reg PF00072.24 gi|154150338|ref|YP_001403956.1| - 4.2e-22 78.4 0.1 1.9e-21 76.3 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain TPR_1 PF00515.28 gi|154150338|ref|YP_001403956.1| - 1.7e-20 71.9 8.2 1.1e-06 28.1 0.2 4.8 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154150338|ref|YP_001403956.1| - 1.1e-18 65.8 5.5 4.1e-06 26.5 0.4 4.7 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154150338|ref|YP_001403956.1| - 1.3e-14 54.6 3.8 1e-08 35.7 1.5 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154150338|ref|YP_001403956.1| - 1.8e-13 50.6 4.0 1.6e-06 28.3 1.7 3.0 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154150338|ref|YP_001403956.1| - 2.4e-13 49.2 2.9 5.6e-05 23.0 0.3 4.4 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|154150338|ref|YP_001403956.1| - 5.8e-13 48.3 1.8 0.00029 21.0 0.0 4.9 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154150338|ref|YP_001403956.1| - 5.9e-12 45.9 1.9 3.3e-07 30.7 0.1 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154150338|ref|YP_001403956.1| - 8.8e-12 44.8 6.9 4.7e-05 23.9 0.3 4.4 4 1 1 5 5 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154150338|ref|YP_001403956.1| - 1.9e-09 37.6 4.9 2.9e-07 30.5 0.9 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat PAS_4 PF08448.10 gi|154150338|ref|YP_001403956.1| - 8.4e-07 29.2 0.0 2.6e-05 24.4 0.0 2.5 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|154150338|ref|YP_001403956.1| - 8.8e-07 29.1 0.1 0.00019 21.6 0.0 3.2 2 1 0 2 2 2 1 PAS domain PAS PF00989.25 gi|154150338|ref|YP_001403956.1| - 1.1e-06 28.6 0.0 0.0019 18.2 0.0 2.7 2 0 0 2 2 2 2 PAS fold TPR_6 PF13174.6 gi|154150338|ref|YP_001403956.1| - 7.3e-06 26.3 1.3 0.14 12.8 0.1 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154150338|ref|YP_001403956.1| - 0.00013 21.8 4.1 0.094 12.8 0.2 3.9 4 0 0 4 4 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|154150338|ref|YP_001403956.1| - 0.0031 17.7 0.2 0.0065 16.7 0.2 1.6 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 PAS_8 PF13188.7 gi|154150338|ref|YP_001403956.1| - 0.021 14.9 0.1 0.67 10.0 0.0 2.6 2 0 0 2 2 2 0 PAS domain Coatomer_E PF04733.14 gi|154150338|ref|YP_001403956.1| - 0.025 14.0 0.0 2.1 7.7 0.0 2.2 1 1 1 2 2 2 0 Coatomer epsilon subunit BTAD PF03704.17 gi|154150338|ref|YP_001403956.1| - 0.042 14.3 1.5 0.81 10.1 0.6 2.3 1 1 0 2 2 2 0 Bacterial transcriptional activator domain Fis1_TPR_C PF14853.6 gi|154150338|ref|YP_001403956.1| - 0.07 13.2 0.3 0.37 10.9 0.1 2.3 2 0 0 2 2 1 0 Fis1 C-terminal tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|154150338|ref|YP_001403956.1| - 0.071 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Virulence factor membrane-bound polymerase, C-terminal TPR_10 PF13374.6 gi|154150338|ref|YP_001403956.1| - 0.42 10.6 10.5 3.4 7.7 0.9 4.1 5 0 0 5 5 5 0 Tetratricopeptide repeat DUF362 PF04015.12 gi|154150339|ref|YP_001403957.1| - 4.3e-44 151.2 1.3 5.1e-44 150.9 1.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|154150339|ref|YP_001403957.1| - 2.6e-12 46.0 14.9 2.4e-06 27.1 3.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154150339|ref|YP_001403957.1| - 7.6e-12 44.8 16.6 1.8e-07 30.9 3.2 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154150339|ref|YP_001403957.1| - 4.1e-10 40.5 6.7 6.5e-05 23.8 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|154150339|ref|YP_001403957.1| - 5.9e-10 39.1 11.8 4.1e-06 26.8 0.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|154150339|ref|YP_001403957.1| - 3.1e-09 37.3 10.7 7e-09 36.2 10.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150339|ref|YP_001403957.1| - 8.7e-09 35.4 10.2 2.2e-08 34.1 10.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154150339|ref|YP_001403957.1| - 1.1e-07 31.8 13.5 6.5e-07 29.4 13.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154150339|ref|YP_001403957.1| - 2.3e-07 31.2 6.0 0.0048 17.3 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154150339|ref|YP_001403957.1| - 1e-06 28.4 17.0 0.0012 18.8 3.8 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|154150339|ref|YP_001403957.1| - 6.1e-06 26.8 19.0 0.0097 16.8 5.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|154150339|ref|YP_001403957.1| - 0.00013 22.2 10.7 0.017 15.6 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|154150339|ref|YP_001403957.1| - 0.00065 20.2 12.1 0.11 13.0 3.2 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Lar_N PF09861.9 gi|154150339|ref|YP_001403957.1| - 0.0065 15.7 0.5 0.012 14.8 0.5 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain Fer4_22 PF17179.4 gi|154150339|ref|YP_001403957.1| - 0.0078 17.0 12.0 0.32 11.8 3.3 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|154150339|ref|YP_001403957.1| - 0.024 14.7 3.4 0.048 13.8 3.4 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|154150339|ref|YP_001403957.1| - 0.067 13.9 16.8 0.14 13.0 5.0 3.5 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|154150339|ref|YP_001403957.1| - 0.17 12.1 10.9 2.1 8.6 10.9 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154150339|ref|YP_001403957.1| - 0.21 12.1 13.2 0.94 10.1 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I META PF03724.16 gi|154150341|ref|YP_001403959.1| - 1.8e-59 198.4 0.4 5.9e-29 100.2 0.1 2.1 2 0 0 2 2 2 2 META domain Inh PF02974.14 gi|154150341|ref|YP_001403959.1| - 4.5e-06 26.6 0.0 0.89 9.7 0.0 3.7 4 0 0 4 4 4 3 Protease inhibitor Inh HicA_toxin PF07927.12 gi|154150344|ref|YP_001403962.1| - 5.6e-20 71.1 0.2 6.2e-20 71.0 0.2 1.0 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|154150345|ref|YP_001403963.1| - 4.9e-13 49.3 0.0 5.5e-13 49.1 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|154150345|ref|YP_001403963.1| - 0.028 14.4 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) CitMHS PF03600.16 gi|154150346|ref|YP_001403964.1| - 5.6e-33 114.4 43.3 5.6e-33 114.4 43.3 1.8 1 1 1 2 2 2 1 Citrate transporter RibD_C PF01872.17 gi|154150347|ref|YP_001403965.1| - 5.9e-51 173.2 0.1 6.5e-51 173.0 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Na_H_Exchanger PF00999.21 gi|154150348|ref|YP_001403966.1| - 7.4e-65 219.2 52.1 1.3e-64 218.4 52.1 1.3 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|154150348|ref|YP_001403966.1| - 1.4e-22 80.1 0.4 2.9e-22 79.1 0.4 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|154150348|ref|YP_001403966.1| - 5e-10 39.1 0.0 1.2e-09 37.8 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain TPR_12 PF13424.6 gi|154150348|ref|YP_001403966.1| - 0.057 13.7 0.6 0.12 12.6 0.6 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat Prominin PF05478.11 gi|154150348|ref|YP_001403966.1| - 2.4 6.0 6.7 4.1 5.2 4.4 2.1 2 0 0 2 2 2 0 Prominin Na_H_Exchanger PF00999.21 gi|154150349|ref|YP_001403967.1| - 1.7e-65 221.3 56.5 2.2e-65 220.9 56.5 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|154150349|ref|YP_001403967.1| - 5e-20 71.9 1.5 9.3e-20 71.0 1.5 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|154150349|ref|YP_001403967.1| - 1.8e-13 50.1 0.0 4.8e-13 48.7 0.0 1.8 1 0 0 1 1 1 1 TrkA-C domain Prominin PF05478.11 gi|154150349|ref|YP_001403967.1| - 3.2 5.6 5.1 5.3 4.9 5.1 1.3 1 0 0 1 1 1 0 Prominin DHHA1 PF02272.19 gi|154150351|ref|YP_001403969.1| - 0.0031 17.9 0.0 0.0063 16.9 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|154150351|ref|YP_001403969.1| - 0.091 13.0 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 DHH family RTC PF01137.21 gi|154150352|ref|YP_001403970.1| - 0.025 13.8 0.1 0.039 13.2 0.1 1.4 1 0 0 1 1 1 0 RNA 3'-terminal phosphate cyclase AMNp_N PF10423.9 gi|154150352|ref|YP_001403970.1| - 0.21 11.2 1.4 2.3 7.8 0.1 2.1 1 1 1 2 2 2 0 Bacterial AMP nucleoside phosphorylase N-terminus DUF308 PF03729.13 gi|154150353|ref|YP_001403971.1| - 6.7e-11 42.4 60.2 0.00066 19.9 21.7 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) UPF0147 PF03685.13 gi|154150354|ref|YP_001403972.1| - 4e-35 119.7 1.3 4.5e-35 119.6 1.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) Auto_anti-p27 PF06677.12 gi|154150355|ref|YP_001403973.1| - 2e-14 53.4 5.0 4.1e-14 52.4 5.0 1.6 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2072 PF09845.9 gi|154150355|ref|YP_001403973.1| - 0.098 12.9 3.5 0.13 12.5 3.5 1.5 1 1 0 1 1 1 0 Zn-ribbon containing protein RHH_4 PF13467.6 gi|154150355|ref|YP_001403973.1| - 0.16 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix domain Helicase_C PF00271.31 gi|154150356|ref|YP_001403974.1| - 9.8e-24 83.8 0.0 7.6e-22 77.8 0.0 2.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|154150356|ref|YP_001403974.1| - 2.2e-20 73.5 0.0 5.6e-20 72.1 0.0 1.8 1 0 0 1 1 1 1 ERCC4 domain DEAD PF00270.29 gi|154150356|ref|YP_001403974.1| - 6.1e-17 61.9 0.0 1.8e-16 60.4 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|154150356|ref|YP_001403974.1| - 2.3e-16 60.2 0.0 4.4e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|154150356|ref|YP_001403974.1| - 1.6e-09 37.7 0.0 5.6e-09 36.0 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|154150356|ref|YP_001403974.1| - 1.4e-07 31.0 0.2 4.6e-07 29.4 0.2 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|154150356|ref|YP_001403974.1| - 2.2e-06 28.2 0.0 9.3e-06 26.2 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|154150356|ref|YP_001403974.1| - 0.028 15.0 0.3 2.6 8.7 0.1 3.3 2 1 1 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold Helicase_RecD PF05127.14 gi|154150356|ref|YP_001403974.1| - 0.042 13.7 0.0 1.1 9.1 0.0 2.4 2 0 0 2 2 2 0 Helicase PhoH PF02562.16 gi|154150356|ref|YP_001403974.1| - 0.079 12.4 0.0 0.18 11.2 0.0 1.7 1 0 0 1 1 1 0 PhoH-like protein HGTP_anticodon PF03129.20 gi|154150357|ref|YP_001403975.1| - 2.1e-21 75.9 0.0 4.3e-21 74.9 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|154150357|ref|YP_001403975.1| - 1.9e-10 41.0 0.0 1.3e-09 38.3 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) fn3_6 PF17766.1 gi|154150357|ref|YP_001403975.1| - 0.12 12.6 0.0 13 6.0 0.0 2.5 2 0 0 2 2 2 0 Fibronectin type-III domain tRNA-synt_2 PF00152.20 gi|154150357|ref|YP_001403975.1| - 0.13 11.3 0.0 8.1 5.4 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) zf-ribbon_3 PF13248.6 gi|154150357|ref|YP_001403975.1| - 0.95 9.0 5.0 8.4 6.0 0.5 2.6 2 0 0 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.7 gi|154150357|ref|YP_001403975.1| - 1.5 8.8 3.8 4.6 7.2 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) DUF2769 PF10967.8 gi|154150357|ref|YP_001403975.1| - 7.2 7.4 8.0 13 6.5 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2769) zf-ACC PF17848.1 gi|154150357|ref|YP_001403975.1| - 8.5 6.5 8.3 6.6 6.9 1.0 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain HTH_23 PF13384.6 gi|154150358|ref|YP_001403976.1| - 4.2e-07 29.6 0.1 0.0002 21.1 0.0 3.1 3 1 0 3 3 3 1 Homeodomain-like domain GerE PF00196.19 gi|154150358|ref|YP_001403976.1| - 1.3e-06 27.8 0.0 9.7e-05 21.8 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_Tnp_ISL3 PF13542.6 gi|154150358|ref|YP_001403976.1| - 0.00035 19.9 0.0 0.012 15.0 0.0 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 MerR PF00376.23 gi|154150358|ref|YP_001403976.1| - 0.00058 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein HTH_Tnp_1 PF01527.20 gi|154150358|ref|YP_001403976.1| - 0.00071 19.8 0.0 0.0065 16.8 0.0 2.2 2 0 0 2 2 2 1 Transposase HTH_38 PF13936.6 gi|154150358|ref|YP_001403976.1| - 0.00085 19.0 0.0 0.04 13.7 0.0 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|154150358|ref|YP_001403976.1| - 0.0019 18.2 0.0 0.0077 16.3 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_10 PF04967.12 gi|154150358|ref|YP_001403976.1| - 0.0024 17.7 0.1 0.073 12.9 0.0 2.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_24 PF13412.6 gi|154150358|ref|YP_001403976.1| - 0.0041 16.6 0.0 0.023 14.3 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|154150358|ref|YP_001403976.1| - 0.0043 17.1 0.0 0.074 13.2 0.0 2.9 4 0 0 4 4 4 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|154150358|ref|YP_001403976.1| - 0.0048 16.4 0.5 1 8.9 0.0 3.3 3 1 0 3 3 3 1 Sigma-70, region 4 HTH_8 PF02954.19 gi|154150358|ref|YP_001403976.1| - 0.006 16.3 0.0 0.054 13.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family Sigma70_r4_2 PF08281.12 gi|154150358|ref|YP_001403976.1| - 0.0094 15.6 0.1 0.45 10.2 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_17 PF12728.7 gi|154150358|ref|YP_001403976.1| - 0.014 15.6 0.0 0.034 14.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r3 PF04539.16 gi|154150358|ref|YP_001403976.1| - 0.018 15.1 2.5 1.7 8.8 0.1 3.0 3 0 0 3 3 3 0 Sigma-70 region 3 HTH_AraC PF00165.23 gi|154150358|ref|YP_001403976.1| - 0.024 14.7 0.0 0.048 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_Mga PF08280.11 gi|154150358|ref|YP_001403976.1| - 0.034 14.2 0.1 1 9.4 0.0 2.4 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain MerR_1 PF13411.6 gi|154150358|ref|YP_001403976.1| - 0.041 14.0 0.0 0.091 12.9 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein DUF2922 PF11148.8 gi|154150358|ref|YP_001403976.1| - 0.075 12.8 0.3 0.22 11.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2922) HTH_7 PF02796.15 gi|154150358|ref|YP_001403976.1| - 0.075 13.1 0.0 0.3 11.2 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase AbiEi_4 PF13338.6 gi|154150358|ref|YP_001403976.1| - 0.083 13.1 0.0 0.45 10.7 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Lactamase_B_3 PF13483.6 gi|154150359|ref|YP_001403977.1| - 5.1e-28 98.0 0.0 6.2e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|154150359|ref|YP_001403977.1| - 2.3e-22 79.5 0.3 3.1e-22 79.1 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|154150359|ref|YP_001403977.1| - 2.1e-08 34.4 5.0 4.1e-08 33.5 5.0 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RNB PF00773.19 gi|154150360|ref|YP_001403978.1| - 7.4e-69 232.6 0.0 9.4e-69 232.2 0.0 1.1 1 0 0 1 1 1 1 RNB domain RNase_II_C_S1 PF18614.1 gi|154150360|ref|YP_001403978.1| - 3.2e-15 55.8 0.1 1.2e-14 54.0 0.0 2.1 2 0 0 2 2 2 1 RNase II-type exonuclease C-terminal S1 domain S1 PF00575.23 gi|154150360|ref|YP_001403978.1| - 0.0014 19.0 0.0 0.048 14.0 0.0 2.6 1 1 0 1 1 1 1 S1 RNA binding domain PKD PF00801.20 gi|154150361|ref|YP_001403979.1| - 4.3e-56 186.7 65.7 6.5e-13 48.3 5.2 6.0 6 0 0 6 6 6 5 PKD domain MG2 PF01835.19 gi|154150361|ref|YP_001403979.1| - 3.7e-08 33.7 14.2 0.44 11.0 0.2 5.2 3 1 2 5 5 5 4 MG2 domain PKD_3 PF16820.5 gi|154150361|ref|YP_001403979.1| - 4.8e-07 29.4 11.6 4.6 7.1 0.1 5.3 5 0 0 5 5 5 5 PKD-like domain Cadherin PF00028.17 gi|154150361|ref|YP_001403979.1| - 0.68 10.4 12.5 1e+02 3.4 0.1 6.5 7 0 0 7 7 7 0 Cadherin domain FlgD_ig PF13860.6 gi|154150361|ref|YP_001403979.1| - 7.9 6.4 12.2 16 5.4 0.2 4.8 4 1 0 4 4 4 0 FlgD Ig-like domain FtsX PF02687.21 gi|154150361|ref|YP_001403979.1| - 10 6.7 11.7 0.91 10.0 2.2 3.3 3 1 0 3 3 3 0 FtsX-like permease family Peptidase_C70 PF12385.8 gi|154150362|ref|YP_001403980.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Papain-like cysteine protease AvrRpt2 tRNA-synt_1g PF09334.11 gi|154150363|ref|YP_001403981.1| - 2.5e-149 497.3 0.0 3e-149 497.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|154150363|ref|YP_001403981.1| - 1.7e-26 92.2 0.0 3.2e-26 91.3 0.0 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|154150363|ref|YP_001403981.1| - 1.9e-22 79.3 0.1 1.3e-10 40.2 0.0 4.1 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|154150363|ref|YP_001403981.1| - 2.4e-13 50.1 0.0 1.1e-09 38.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|154150363|ref|YP_001403981.1| - 5.6e-13 49.1 0.0 9e-13 48.4 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA DZR PF12773.7 gi|154150363|ref|YP_001403981.1| - 0.096 12.7 7.9 0.59 10.2 7.9 2.3 1 1 0 1 1 1 0 Double zinc ribbon TerY_C PF15616.6 gi|154150363|ref|YP_001403981.1| - 0.1 12.7 2.2 0.63 10.2 1.6 2.2 2 0 0 2 2 2 0 TerY-C metal binding domain zf-ribbon_3 PF13248.6 gi|154150363|ref|YP_001403981.1| - 0.48 9.9 15.0 4.8 6.7 5.6 3.6 1 1 2 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|154150363|ref|YP_001403981.1| - 1.8 8.4 10.2 14 5.6 6.3 3.2 2 2 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|154150363|ref|YP_001403981.1| - 3.8 7.5 7.4 3.8 7.6 3.7 2.2 1 1 1 2 2 2 0 zinc-ribbons Cript PF10235.9 gi|154150363|ref|YP_001403981.1| - 4.2 8.0 7.7 2.8 8.6 2.6 2.5 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT PAS_4 PF08448.10 gi|154150364|ref|YP_001403982.1| - 4.1e-13 49.5 0.0 3.1e-12 46.7 0.0 2.4 3 0 0 3 3 3 1 PAS fold HAMP PF00672.25 gi|154150364|ref|YP_001403982.1| - 9.7e-09 35.5 0.1 2.1e-08 34.4 0.1 1.6 1 0 0 1 1 1 1 HAMP domain PAS PF00989.25 gi|154150364|ref|YP_001403982.1| - 7.5e-08 32.4 0.0 3.3e-07 30.3 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|154150364|ref|YP_001403982.1| - 7.5e-08 32.6 0.0 2.5e-07 30.9 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|154150364|ref|YP_001403982.1| - 2.8e-06 27.2 0.0 2.5e-05 24.1 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|154150364|ref|YP_001403982.1| - 0.035 14.4 0.1 0.097 13.0 0.0 1.8 2 0 0 2 2 2 0 PAS fold HEAT_2 PF13646.6 gi|154150365|ref|YP_001403983.1| - 1.6e-34 118.2 8.0 1.5e-12 47.7 0.9 3.0 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.22 gi|154150365|ref|YP_001403983.1| - 1.5e-23 80.8 0.7 0.0012 18.9 0.0 5.8 6 0 0 6 6 6 5 HEAT repeat HEAT_PBS PF03130.16 gi|154150365|ref|YP_001403983.1| - 1.7e-19 68.5 7.4 0.00061 20.2 0.1 5.4 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|154150365|ref|YP_001403983.1| - 6.1e-14 52.2 5.9 0.039 14.5 0.0 5.5 6 0 0 6 6 6 5 HEAT-like repeat Cnd1 PF12717.7 gi|154150365|ref|YP_001403983.1| - 7.4e-09 35.9 0.8 0.0036 17.4 0.0 4.5 1 1 1 3 3 3 3 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.7 gi|154150365|ref|YP_001403983.1| - 7.1e-06 26.5 0.0 2.6 8.7 0.0 4.7 1 1 4 5 5 5 2 Vacuolar 14 Fab1-binding region Arm PF00514.23 gi|154150365|ref|YP_001403983.1| - 8.2e-06 25.7 0.0 0.34 11.0 0.0 4.6 3 1 2 5 5 5 1 Armadillo/beta-catenin-like repeat Aconitase_B_N PF11791.8 gi|154150365|ref|YP_001403983.1| - 0.018 15.1 0.3 18 5.4 0.0 3.2 1 1 1 3 3 3 0 Aconitate B N-terminal domain DUF4042 PF13251.6 gi|154150365|ref|YP_001403983.1| - 0.1 12.3 0.1 66 3.1 0.1 3.7 2 1 0 3 3 3 0 Domain of unknown function (DUF4042) zinc_ribbon_2 PF13240.6 gi|154150366|ref|YP_001403984.1| - 1.9e-06 27.4 5.8 3.3e-06 26.6 5.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|154150366|ref|YP_001403984.1| - 4.7e-05 23.3 0.6 8.1e-05 22.6 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|154150366|ref|YP_001403984.1| - 0.0088 16.8 0.2 0.014 16.1 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|154150366|ref|YP_001403984.1| - 0.052 13.0 4.1 0.1 12.1 4.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Vps36_ESCRT-II PF11605.8 gi|154150366|ref|YP_001403984.1| - 0.08 13.1 0.2 3.3 8.0 0.0 2.6 2 1 0 2 2 2 0 Vacuolar protein sorting protein 36 Vps36 zf-dskA_traR PF01258.17 gi|154150366|ref|YP_001403984.1| - 0.17 11.8 1.7 4.1 7.4 0.2 2.3 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Nudix_N_2 PF14803.6 gi|154150366|ref|YP_001403984.1| - 0.3 11.0 5.2 8.5 6.4 0.4 2.9 3 0 0 3 3 3 0 Nudix N-terminal DUF2116 PF09889.9 gi|154150366|ref|YP_001403984.1| - 0.75 9.8 6.1 8.1 6.5 1.1 2.4 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-RRN7 PF11781.8 gi|154150366|ref|YP_001403984.1| - 1.2 8.9 5.8 1.7 8.4 1.2 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Nmad5 PF18757.1 gi|154150368|ref|YP_001403986.1| - 0.012 15.8 0.0 0.018 15.3 0.0 1.3 1 1 0 1 1 1 0 Nucleotide modification associated domain 5 CxxCxxCC PF03692.15 gi|154150368|ref|YP_001403986.1| - 0.018 15.7 0.1 0.026 15.2 0.1 1.3 1 0 0 1 1 1 0 Putative zinc- or iron-chelating domain AIRS_C PF02769.22 gi|154150369|ref|YP_001403987.1| - 2.3e-17 63.5 0.2 4.7e-17 62.6 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|154150369|ref|YP_001403987.1| - 2.3e-08 34.6 2.4 6.1e-08 33.2 2.4 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Abhydrolase_6 PF12697.7 gi|154150370|ref|YP_001403988.1| - 1.3e-10 42.2 0.4 1.8e-10 41.8 0.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|154150370|ref|YP_001403988.1| - 4e-10 39.8 0.0 2.3e-06 27.4 0.0 2.4 3 0 0 3 3 3 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|154150370|ref|YP_001403988.1| - 2.4e-05 23.8 0.0 0.01 15.1 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|154150370|ref|YP_001403988.1| - 0.00085 18.9 0.0 0.087 12.4 0.0 2.2 2 0 0 2 2 2 2 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|154150370|ref|YP_001403988.1| - 0.0027 17.4 0.0 0.0045 16.6 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_8 PF06259.12 gi|154150370|ref|YP_001403988.1| - 0.0029 17.3 0.0 0.0044 16.7 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase VEG PF06257.11 gi|154150371|ref|YP_001403989.1| - 0.093 12.8 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Biofilm formation stimulator VEG Polbeta PF18765.1 gi|154150372|ref|YP_001403990.1| - 1.5e-16 60.3 0.2 1.7e-16 60.1 0.2 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|154150372|ref|YP_001403990.1| - 3.6e-14 52.8 0.4 4.2e-14 52.6 0.4 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.9 gi|154150372|ref|YP_001403990.1| - 0.0077 16.0 0.0 0.009 15.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-dephospho-CoA transferase MdcG Ribosomal_S24e PF01282.19 gi|154150372|ref|YP_001403990.1| - 0.13 12.2 0.1 6.6 6.8 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S24e AlbA_2 PF04326.14 gi|154150373|ref|YP_001403991.1| - 1.5e-16 60.8 1.0 3.9e-16 59.5 0.2 2.1 3 0 0 3 3 3 1 Putative DNA-binding domain FeThRed_B PF02943.15 gi|154150374|ref|YP_001403992.1| - 1.2e-25 89.5 0.6 2.2e-25 88.7 0.6 1.3 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.15 gi|154150374|ref|YP_001403992.1| - 0.0056 16.2 1.4 0.013 15.1 1.4 1.6 1 0 0 1 1 1 1 RecR protein zf-C4H2 PF10146.9 gi|154150374|ref|YP_001403992.1| - 0.12 12.7 1.6 0.11 12.7 1.6 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein Rubredoxin PF00301.20 gi|154150374|ref|YP_001403992.1| - 0.29 11.2 8.2 1.4 9.0 0.3 3.1 3 0 0 3 3 3 0 Rubredoxin Glutaredoxin PF00462.24 gi|154150375|ref|YP_001403993.1| - 1.8e-10 40.8 0.0 3.3e-10 40.0 0.0 1.4 2 0 0 2 2 2 1 Glutaredoxin GST_N_3 PF13417.6 gi|154150375|ref|YP_001403993.1| - 1.4e-07 31.8 0.0 1.8e-07 31.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|154150375|ref|YP_001403993.1| - 9.7e-07 29.0 0.0 1.2e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|154150375|ref|YP_001403993.1| - 0.033 14.5 0.0 0.055 13.8 0.0 1.4 1 1 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.6 gi|154150375|ref|YP_001403993.1| - 0.11 12.6 0.1 1.3 9.2 0.1 2.2 1 1 0 1 1 1 0 Thioredoxin domain ArsC PF03960.15 gi|154150375|ref|YP_001403993.1| - 0.2 11.7 0.0 0.34 11.0 0.0 1.3 1 0 0 1 1 1 0 ArsC family CPSase_sm_chain PF00988.22 gi|154150376|ref|YP_001403994.1| - 2.7e-40 137.2 0.0 3.8e-40 136.7 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|154150376|ref|YP_001403994.1| - 6.2e-39 133.7 0.0 9.1e-39 133.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|154150376|ref|YP_001403994.1| - 5.1e-09 36.2 0.1 1.5e-07 31.4 0.1 2.1 1 1 0 1 1 1 1 Peptidase C26 CPSase_L_D2 PF02786.17 gi|154150377|ref|YP_001403995.1| - 5.9e-105 349.4 0.6 4.8e-67 225.5 0.0 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|154150377|ref|YP_001403995.1| - 5.2e-32 110.8 0.0 2.2e-31 108.7 0.0 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|154150377|ref|YP_001403995.1| - 1.6e-22 79.5 0.2 4.3e-20 71.7 0.0 4.0 4 0 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.22 gi|154150377|ref|YP_001403995.1| - 4.6e-18 65.4 0.1 1.9e-08 34.1 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|154150377|ref|YP_001403995.1| - 2e-15 56.9 0.1 1.1e-07 31.6 0.1 2.6 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|154150377|ref|YP_001403995.1| - 2.1e-15 56.7 0.1 3.4e-06 26.8 0.0 3.5 3 1 0 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|154150377|ref|YP_001403995.1| - 1.5e-13 51.1 0.3 2.2e-07 31.1 0.1 2.6 2 0 0 2 2 2 2 ATP-grasp domain Glyco_trans_4_2 PF13477.6 gi|154150377|ref|YP_001403995.1| - 0.00052 20.1 0.0 0.47 10.5 0.0 3.5 3 0 0 3 3 3 1 Glycosyl transferase 4-like Amidinotransf PF02274.17 gi|154150377|ref|YP_001403995.1| - 0.059 12.4 0.0 5 6.1 0.0 2.2 2 0 0 2 2 2 0 Amidinotransferase ATP-grasp_2 PF08442.10 gi|154150377|ref|YP_001403995.1| - 0.087 12.4 0.0 14 5.2 0.0 3.2 2 1 0 2 2 2 0 ATP-grasp domain Arginosuc_synth PF00764.19 gi|154150379|ref|YP_001403997.1| - 1.8e-161 537.8 0.0 2.1e-161 537.6 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|154150379|ref|YP_001403997.1| - 0.00047 19.7 0.0 0.0008 19.0 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|154150379|ref|YP_001403997.1| - 0.076 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 NAD synthase DUF2114 PF09887.9 gi|154150380|ref|YP_001403998.1| - 1.1e-225 749.3 0.3 1.3e-225 749.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Vps52 PF04129.12 gi|154150381|ref|YP_001403999.1| - 0.07 11.9 0.1 0.071 11.8 0.1 1.0 1 0 0 1 1 1 0 Vps52 / Sac2 family Cue1_U7BR PF18499.1 gi|154150381|ref|YP_001403999.1| - 0.092 12.8 0.2 0.14 12.2 0.2 1.3 1 0 0 1 1 1 0 Ubc7p-binding region of Cue1 OTCace PF00185.24 gi|154150382|ref|YP_001404000.1| - 2.4e-53 180.4 0.0 3.9e-53 179.7 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|154150382|ref|YP_001404000.1| - 4.4e-49 166.3 0.1 7.7e-49 165.5 0.1 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OCD_Mu_crystall PF02423.15 gi|154150382|ref|YP_001404000.1| - 0.076 11.9 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family GARS_A PF01071.19 gi|154150383|ref|YP_001404001.1| - 2.4e-56 190.6 0.0 3.8e-56 190.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|154150383|ref|YP_001404001.1| - 1.5e-25 89.8 0.2 3.5e-25 88.6 0.2 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|154150383|ref|YP_001404001.1| - 8.4e-15 54.8 0.4 2.4e-13 50.1 0.0 2.9 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|154150383|ref|YP_001404001.1| - 0.033 14.2 0.0 0.094 12.8 0.0 1.7 1 1 0 1 1 1 0 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|154150383|ref|YP_001404001.1| - 0.082 12.1 0.0 0.24 10.6 0.0 1.7 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Pribosyltran PF00156.27 gi|154150384|ref|YP_001404002.1| - 2.5e-16 59.6 1.4 3.7e-16 59.1 1.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PALP PF00291.25 gi|154150384|ref|YP_001404002.1| - 0.0014 18.1 0.8 0.0028 17.1 0.8 1.5 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme UPRTase PF14681.6 gi|154150384|ref|YP_001404002.1| - 0.0038 16.7 0.1 0.005 16.3 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase CarS-like PF01864.17 gi|154150385|ref|YP_001404003.1| - 1.3e-44 152.3 1.5 1.5e-44 152.1 1.5 1.1 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|154150385|ref|YP_001404003.1| - 2.5e-07 30.7 0.1 2.5e-07 30.7 0.1 1.9 2 0 0 2 2 2 1 Cytidylyltransferase family DUF2273 PF10031.9 gi|154150385|ref|YP_001404003.1| - 0.069 13.2 0.8 0.069 13.2 0.8 3.7 4 1 0 4 4 4 0 Small integral membrane protein (DUF2273) DUF92 PF01940.16 gi|154150385|ref|YP_001404003.1| - 0.097 12.1 0.3 0.097 12.1 0.3 1.4 2 0 0 2 2 2 0 Integral membrane protein DUF92 Phage_holin_3_6 PF07332.11 gi|154150385|ref|YP_001404003.1| - 2 8.5 7.9 0.93 9.6 0.2 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF5518 PF17647.1 gi|154150385|ref|YP_001404003.1| - 4.6 7.4 12.7 0.55 10.4 1.8 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5518) FtsX PF02687.21 gi|154150385|ref|YP_001404003.1| - 5.5 7.5 9.9 68 4.0 9.9 2.2 1 1 0 1 1 1 0 FtsX-like permease family Radical_SAM PF04055.21 gi|154150386|ref|YP_001404004.1| - 1.8e-21 77.2 0.6 1.7e-20 74.0 0.0 2.5 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|154150386|ref|YP_001404004.1| - 5.6e-07 29.9 0.2 1.4e-06 28.6 0.0 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|154150386|ref|YP_001404004.1| - 8e-06 26.0 0.6 2.5e-05 24.4 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain TF_Zn_Ribbon PF08271.12 gi|154150386|ref|YP_001404004.1| - 0.0091 15.5 0.1 0.11 12.1 0.1 2.6 2 0 0 2 2 2 1 TFIIB zinc-binding OCD_Mu_crystall PF02423.15 gi|154150387|ref|YP_001404005.1| - 1.4e-93 313.3 0.0 1.7e-93 313.0 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|154150387|ref|YP_001404005.1| - 0.0026 17.8 0.0 0.0087 16.1 0.0 1.9 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|154150387|ref|YP_001404005.1| - 0.017 15.7 0.0 0.079 13.5 0.0 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent UPF0058 PF01893.16 gi|154150388|ref|YP_001404006.1| - 2e-33 114.5 2.0 2.2e-33 114.4 2.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Mgm101p PF06420.12 gi|154150388|ref|YP_001404006.1| - 0.029 13.9 0.0 0.031 13.8 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial genome maintenance MGM101 F-actin_cap_A PF01267.17 gi|154150388|ref|YP_001404006.1| - 0.077 12.4 0.3 0.1 12.0 0.3 1.1 1 0 0 1 1 1 0 F-actin capping protein alpha subunit Toprim_4 PF13662.6 gi|154150389|ref|YP_001404007.1| - 6.5e-15 55.4 0.2 1.7e-14 54.0 0.2 1.8 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|154150389|ref|YP_001404007.1| - 1.2e-05 25.7 0.0 2.6e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|154150389|ref|YP_001404007.1| - 0.0028 17.9 1.5 0.025 14.8 0.2 3.1 2 2 0 2 2 2 1 Toprim domain DUF167 PF02594.16 gi|154150390|ref|YP_001404008.1| - 1.1e-20 73.5 0.4 1.3e-20 73.3 0.4 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Amidohydro_1 PF01979.20 gi|154150391|ref|YP_001404009.1| - 5.3e-09 35.9 0.0 1e-07 31.6 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|154150391|ref|YP_001404009.1| - 2.9e-08 33.6 0.0 0.00093 18.8 0.0 2.6 1 1 0 2 2 2 2 Amidohydrolase family DUF2196 PF09962.9 gi|154150393|ref|YP_001404011.1| - 2.8e-30 104.1 1.4 3.5e-30 103.8 1.4 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) PHD_like PF12910.7 gi|154150395|ref|YP_001404013.1| - 0.0057 16.7 0.0 0.0091 16.0 0.0 1.3 1 0 0 1 1 1 1 Antitoxin of toxin-antitoxin, RelE / RelB, TA system HicB_lk_antitox PF15919.5 gi|154150395|ref|YP_001404013.1| - 0.012 15.7 0.0 0.019 15.1 0.0 1.3 1 1 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Antimicrobial22 PF16047.5 gi|154150395|ref|YP_001404013.1| - 0.31 11.0 2.6 0.49 10.3 2.6 1.3 1 0 0 1 1 1 0 Frog antimicrobial peptide HicA_toxin PF07927.12 gi|154150396|ref|YP_001404014.1| - 7.9e-12 45.0 0.0 9.6e-12 44.8 0.0 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, NTP_transf_2 PF01909.23 gi|154150397|ref|YP_001404015.1| - 4.6e-12 46.1 0.0 5.4e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|154150397|ref|YP_001404015.1| - 3.3e-11 43.1 0.0 3.8e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MdcG PF10620.9 gi|154150397|ref|YP_001404015.1| - 0.11 12.3 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Asn_synthase PF00733.21 gi|154150398|ref|YP_001404016.1| - 5.3e-41 141.5 0.5 5.4e-27 95.4 0.1 2.0 1 1 1 2 2 2 2 Asparagine synthase NAD_synthase PF02540.17 gi|154150398|ref|YP_001404016.1| - 0.0022 17.2 0.0 0.0031 16.7 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Glu-tRNAGln PF02686.15 gi|154150399|ref|YP_001404017.1| - 3.2e-13 49.7 0.1 5e-13 49.1 0.1 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.21 gi|154150400|ref|YP_001404018.1| - 6.3e-150 500.1 0.6 7.6e-150 499.8 0.6 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.15 gi|154150401|ref|YP_001404019.1| - 1e-103 346.5 0.0 1.5e-103 345.9 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|154150401|ref|YP_001404019.1| - 6.2e-37 126.8 0.0 9e-37 126.2 0.0 1.2 1 0 0 1 1 1 1 GatB domain Topoisom_bac PF01131.20 gi|154150402|ref|YP_001404020.1| - 6.6e-118 394.3 0.0 8.7e-118 393.9 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|154150402|ref|YP_001404020.1| - 1.9e-15 57.0 1.3 2.8e-15 56.4 0.2 1.9 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|154150402|ref|YP_001404020.1| - 7e-11 41.7 0.8 1.9e-10 40.3 0.8 1.7 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.6 gi|154150402|ref|YP_001404020.1| - 8.1e-11 42.4 16.3 0.0054 17.3 2.3 5.0 5 0 0 5 5 5 4 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|154150402|ref|YP_001404020.1| - 0.0078 16.4 5.3 12 6.1 0.3 4.3 2 1 2 4 4 4 1 Domain of unknown function (DUF4332) MAP65_ASE1 PF03999.12 gi|154150402|ref|YP_001404020.1| - 0.074 11.7 0.8 0.12 11.1 0.8 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) Toprim_4 PF13662.6 gi|154150402|ref|YP_001404020.1| - 0.084 13.4 0.2 0.46 11.0 0.1 2.2 2 0 0 2 2 2 0 Toprim domain HHH_3 PF12836.7 gi|154150402|ref|YP_001404020.1| - 0.17 12.2 0.4 40 4.6 0.0 4.0 4 0 0 4 4 4 0 Helix-hairpin-helix motif PcrB PF01884.17 gi|154150403|ref|YP_001404021.1| - 2.8e-64 216.7 0.7 3.6e-64 216.3 0.7 1.0 1 0 0 1 1 1 1 PcrB family SpoU_methylase PF00588.19 gi|154150404|ref|YP_001404022.1| - 3.6e-26 92.0 0.0 4.8e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family OsmC PF02566.19 gi|154150405|ref|YP_001404023.1| - 4.3e-14 52.8 0.0 7.3e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 OsmC-like protein HGD-D PF06050.13 gi|154150406|ref|YP_001404024.1| - 2.6e-80 270.6 0.0 3.1e-80 270.4 0.0 1.1 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component PqqD PF05402.12 gi|154150406|ref|YP_001404024.1| - 0.075 13.3 0.3 1.5 9.2 0.0 3.2 4 0 0 4 4 4 0 Coenzyme PQQ synthesis protein D (PqqD) BcrAD_BadFG PF01869.20 gi|154150407|ref|YP_001404025.1| - 2.1e-48 165.1 0.3 6.2e-47 160.3 0.3 2.0 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|154150407|ref|YP_001404025.1| - 0.0053 17.1 0.2 0.11 12.9 0.0 2.5 3 0 0 3 3 3 1 Cell division protein FtsA FGGY_N PF00370.21 gi|154150407|ref|YP_001404025.1| - 0.18 11.3 0.0 2.7 7.5 0.0 2.1 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain C_GCAxxG_C_C PF09719.10 gi|154150408|ref|YP_001404026.1| - 1.6e-26 92.9 1.1 2e-26 92.6 1.1 1.1 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) HGD-D PF06050.13 gi|154150409|ref|YP_001404027.1| - 1.6e-79 268.0 0.0 1.9e-79 267.8 0.0 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component 5_3_exonuc PF01367.20 gi|154150409|ref|YP_001404027.1| - 0.15 12.7 0.2 0.92 10.1 0.1 2.1 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold DrsE PF02635.15 gi|154150411|ref|YP_001404029.1| - 0.069 13.5 0.0 0.36 11.2 0.0 2.0 2 0 0 2 2 2 0 DsrE/DsrF-like family DDE_Tnp_1_5 PF13737.6 gi|154150411|ref|YP_001404029.1| - 0.069 13.5 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain DUF2203 PF09969.9 gi|154150412|ref|YP_001404030.1| - 0.014 16.1 1.9 0.52 11.0 1.9 2.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) kleA_kleC PF17383.2 gi|154150412|ref|YP_001404030.1| - 0.017 15.4 0.3 0.034 14.5 0.3 1.5 1 0 0 1 1 1 0 Uncharacterized KorC regulated protein A Seryl_tRNA_N PF02403.22 gi|154150412|ref|YP_001404030.1| - 0.024 14.9 0.6 0.048 13.9 0.6 1.5 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain FapA PF03961.13 gi|154150412|ref|YP_001404030.1| - 0.034 12.7 0.5 0.042 12.5 0.5 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Latarcin PF10279.9 gi|154150412|ref|YP_001404030.1| - 0.042 14.2 0.8 0.082 13.3 0.8 1.5 1 0 0 1 1 1 0 Latarcin precursor Helo_like_N PF17111.5 gi|154150412|ref|YP_001404030.1| - 0.06 12.7 1.0 0.2 11.0 0.8 1.8 1 1 1 2 2 2 0 Fungal N-terminal domain of STAND proteins DUF16 PF01519.16 gi|154150412|ref|YP_001404030.1| - 0.14 12.7 1.1 0.27 11.7 1.0 1.6 2 0 0 2 2 2 0 Protein of unknown function DUF16 NIR_SIR_ferr PF03460.17 gi|154150413|ref|YP_001404031.1| - 8.5e-19 67.2 0.0 1.7e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain NIR_SIR PF01077.22 gi|154150413|ref|YP_001404031.1| - 4.2e-18 65.4 0.0 5.5e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain Fer4 PF00037.27 gi|154150413|ref|YP_001404031.1| - 1.6e-08 34.0 13.5 9.4e-05 22.1 1.9 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|154150413|ref|YP_001404031.1| - 5.9e-07 29.6 7.9 0.00086 19.4 2.9 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154150413|ref|YP_001404031.1| - 3.6e-05 24.6 3.6 0.19 12.7 0.8 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|154150413|ref|YP_001404031.1| - 3.6e-05 24.3 12.7 0.00018 22.1 9.6 3.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154150413|ref|YP_001404031.1| - 0.0001 22.6 6.5 0.32 11.5 0.0 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154150413|ref|YP_001404031.1| - 0.00013 22.0 9.2 0.00013 22.0 9.2 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154150413|ref|YP_001404031.1| - 0.00089 19.2 11.0 0.0028 17.7 3.2 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154150413|ref|YP_001404031.1| - 0.00091 19.2 1.1 0.00091 19.2 1.1 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|154150413|ref|YP_001404031.1| - 0.0012 19.6 5.7 11 6.9 0.0 3.6 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_10 PF13237.6 gi|154150413|ref|YP_001404031.1| - 0.002 18.2 14.5 0.014 15.5 10.6 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154150413|ref|YP_001404031.1| - 0.049 14.2 11.5 1.4 9.5 0.2 3.1 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154150413|ref|YP_001404031.1| - 5 7.7 9.4 29 5.3 1.8 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I KTSC PF13619.6 gi|154150414|ref|YP_001404032.1| - 0.064 13.1 0.0 0.085 12.7 0.0 1.2 1 0 0 1 1 1 0 KTSC domain Rubredoxin PF00301.20 gi|154150415|ref|YP_001404033.1| - 7.4e-18 64.3 1.4 1.1e-10 41.3 0.2 2.1 2 0 0 2 2 2 2 Rubredoxin Zn-ribbon_8 PF09723.10 gi|154150415|ref|YP_001404033.1| - 0.00039 20.5 0.4 0.42 10.8 0.1 2.3 2 0 0 2 2 2 2 Zinc ribbon domain PHD_4 PF16866.5 gi|154150415|ref|YP_001404033.1| - 0.0013 18.8 0.9 0.029 14.4 0.9 2.1 1 1 0 1 1 1 1 PHD-finger TF_Zn_Ribbon PF08271.12 gi|154150415|ref|YP_001404033.1| - 0.0041 16.6 0.2 3.1 7.4 0.1 2.7 3 0 0 3 3 3 2 TFIIB zinc-binding DUF4379 PF14311.6 gi|154150415|ref|YP_001404033.1| - 0.006 16.9 0.1 0.15 12.5 0.0 2.2 2 0 0 2 2 2 1 Probable Zinc-ribbon domain TFIIS_C PF01096.18 gi|154150415|ref|YP_001404033.1| - 0.0062 16.4 3.7 0.42 10.5 0.5 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.10 gi|154150415|ref|YP_001404033.1| - 0.012 15.3 2.7 1.9 8.3 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain HalOD2 PF18547.1 gi|154150415|ref|YP_001404033.1| - 0.012 15.5 0.2 2.6 8.0 0.0 2.2 2 0 0 2 2 2 0 Halobacterial output domain 2 Nudix_N_2 PF14803.6 gi|154150415|ref|YP_001404033.1| - 0.015 15.2 2.8 3.1 7.8 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-Sec23_Sec24 PF04810.15 gi|154150415|ref|YP_001404033.1| - 0.038 14.1 0.1 4 7.6 0.0 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_10 PF10058.9 gi|154150415|ref|YP_001404033.1| - 0.048 13.4 1.0 3.7 7.3 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Rubredoxin_2 PF18073.1 gi|154150415|ref|YP_001404033.1| - 0.052 13.3 5.8 1.7 8.4 2.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DSRB PF10781.9 gi|154150415|ref|YP_001404033.1| - 0.064 12.9 0.0 0.083 12.5 0.0 1.2 1 0 0 1 1 1 0 Dextransucrase DSRB Desulfoferrod_N PF06397.12 gi|154150415|ref|YP_001404033.1| - 0.068 12.8 1.4 0.67 9.6 0.3 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain RbpA PF13397.6 gi|154150415|ref|YP_001404033.1| - 0.12 13.0 0.2 0.23 12.1 0.1 1.4 1 1 0 1 1 1 0 RNA polymerase-binding protein Ribosomal_S14 PF00253.21 gi|154150415|ref|YP_001404033.1| - 0.15 11.9 0.2 0.54 10.1 0.0 1.9 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e ADK_lid PF05191.14 gi|154150415|ref|YP_001404033.1| - 0.17 11.9 2.0 1.2 9.2 2.0 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid Zn_ribbon_SprT PF17283.2 gi|154150415|ref|YP_001404033.1| - 0.29 11.1 4.9 4.6 7.2 0.6 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|154150415|ref|YP_001404033.1| - 0.41 10.4 5.9 4 7.3 2.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|154150415|ref|YP_001404033.1| - 0.42 11.2 3.0 19 5.9 0.1 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ACC PF17848.1 gi|154150415|ref|YP_001404033.1| - 0.53 10.4 4.2 1.4 9.1 0.5 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain UPF0547 PF10571.9 gi|154150415|ref|YP_001404033.1| - 0.78 9.9 4.4 7.6 6.7 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|154150415|ref|YP_001404033.1| - 1.1 8.7 6.8 0.72 9.3 1.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DrsE PF02635.15 gi|154150416|ref|YP_001404034.1| - 0.00032 21.0 0.0 0.00046 20.6 0.0 1.3 1 1 0 1 1 1 1 DsrE/DsrF-like family Bombinin PF05298.11 gi|154150416|ref|YP_001404034.1| - 0.037 13.7 0.0 0.058 13.1 0.1 1.4 1 1 0 1 1 1 0 Bombinin ANAPC4_WD40 PF12894.7 gi|154150416|ref|YP_001404034.1| - 0.087 13.1 0.1 6.9 7.0 0.0 2.1 1 1 1 2 2 2 0 Anaphase-promoting complex subunit 4 WD40 domain GXGXG PF01493.19 gi|154150418|ref|YP_001404036.1| - 2.5e-09 37.0 19.0 3.3e-08 33.3 17.8 2.3 1 1 1 2 2 2 2 GXGXG motif Amidohydro_3 PF07969.11 gi|154150419|ref|YP_001404037.1| - 5e-68 230.7 0.0 6e-68 230.4 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|154150419|ref|YP_001404037.1| - 0.00014 21.3 0.0 0.00066 19.1 0.0 1.9 2 0 0 2 2 2 1 Amidohydrolase family Molybdopterin PF00384.22 gi|154150420|ref|YP_001404038.1| - 3.7e-15 55.8 0.0 1.9e-14 53.5 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|154150421|ref|YP_001404039.1| - 2.3e-12 46.9 0.0 2.8e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain VHP PF02209.19 gi|154150421|ref|YP_001404039.1| - 0.054 13.6 0.0 0.087 12.9 0.0 1.3 1 0 0 1 1 1 0 Villin headpiece domain Fer4 PF00037.27 gi|154150422|ref|YP_001404040.1| - 3.6e-18 64.6 13.6 3.9e-10 39.1 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154150422|ref|YP_001404040.1| - 1e-14 53.9 12.7 1.9e-08 34.0 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|154150422|ref|YP_001404040.1| - 7.6e-13 48.4 19.3 3.6e-10 39.8 8.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150422|ref|YP_001404040.1| - 9.2e-13 48.1 20.6 8.5e-11 41.8 9.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|154150422|ref|YP_001404040.1| - 9.4e-13 48.5 9.7 1.3e-12 48.1 9.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154150422|ref|YP_001404040.1| - 2.7e-12 46.0 12.8 7.8e-07 28.8 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154150422|ref|YP_001404040.1| - 2.2e-11 44.5 18.4 1.4e-09 38.8 7.7 1.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|154150422|ref|YP_001404040.1| - 5.3e-10 39.3 9.8 8.1e-05 22.7 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150422|ref|YP_001404040.1| - 7.1e-10 38.6 10.3 6.7e-05 23.1 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|154150422|ref|YP_001404040.1| - 3.3e-08 34.0 22.2 2e-06 28.2 10.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|154150422|ref|YP_001404040.1| - 1.4e-06 29.0 7.5 0.01 16.6 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|154150422|ref|YP_001404040.1| - 4.7e-06 27.2 21.1 0.0014 19.4 6.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|154150422|ref|YP_001404040.1| - 9.3e-06 26.3 11.7 0.005 17.6 2.4 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|154150422|ref|YP_001404040.1| - 1.1e-05 25.8 13.3 4e-05 24.0 12.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154150422|ref|YP_001404040.1| - 0.00014 22.4 11.8 0.064 13.8 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|154150422|ref|YP_001404040.1| - 0.0037 17.4 8.3 0.33 11.1 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|154150422|ref|YP_001404040.1| - 0.82 9.8 9.7 2.4 8.3 0.8 2.5 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Enterotoxin_HS1 PF08090.11 gi|154150422|ref|YP_001404040.1| - 4.9 7.2 10.6 3.7 7.6 2.0 2.3 2 0 0 2 2 2 0 Heat stable E.coli enterotoxin 1 Lactamase_B PF00753.27 gi|154150423|ref|YP_001404041.1| - 8.9e-13 48.7 0.7 6.7e-12 45.8 0.5 2.0 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|154150423|ref|YP_001404041.1| - 2.9e-11 43.3 0.2 2.5e-10 40.2 0.1 2.3 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|154150423|ref|YP_001404041.1| - 0.00024 21.1 0.2 0.081 12.8 0.0 2.3 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|154150423|ref|YP_001404041.1| - 0.0032 16.9 0.0 0.0056 16.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Asp_protease_2 PF13650.6 gi|154150423|ref|YP_001404041.1| - 0.033 14.8 0.0 0.068 13.8 0.0 1.5 1 0 0 1 1 1 0 Aspartyl protease PDEase_II PF02112.15 gi|154150423|ref|YP_001404041.1| - 0.31 10.1 0.5 0.47 9.5 0.5 1.1 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II DrsE PF02635.15 gi|154150424|ref|YP_001404042.1| - 5.4e-15 55.8 0.0 1.7e-07 31.6 0.0 3.2 3 0 0 3 3 3 3 DsrE/DsrF-like family DsrH PF04077.12 gi|154150424|ref|YP_001404042.1| - 0.21 11.7 0.0 5.6 7.2 0.0 2.9 2 1 0 2 2 2 0 DsrH like protein dUTPase PF00692.19 gi|154150425|ref|YP_001404043.1| - 1.3e-11 44.3 0.0 1.7e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|154150425|ref|YP_001404043.1| - 9.6e-09 34.5 0.0 1.7e-08 33.6 0.0 1.4 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) tRNA-Thr_ED PF08915.11 gi|154150426|ref|YP_001404044.1| - 5e-52 175.6 0.1 9.6e-52 174.7 0.1 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|154150426|ref|YP_001404044.1| - 6.5e-21 74.3 0.1 1.3e-20 73.3 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|154150426|ref|YP_001404044.1| - 2.2e-16 60.4 0.0 4.2e-16 59.4 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) TIR_2 PF13676.6 gi|154150426|ref|YP_001404044.1| - 0.16 12.6 0.0 0.39 11.3 0.0 1.7 1 0 0 1 1 1 0 TIR domain Prismane PF03063.20 gi|154150427|ref|YP_001404045.1| - 1.3e-158 528.9 0.1 1.8e-158 528.5 0.1 1.1 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family CbiA PF01656.23 gi|154150428|ref|YP_001404046.1| - 6.2e-15 55.4 0.0 1.1e-14 54.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|154150428|ref|YP_001404046.1| - 1.5e-13 51.1 0.0 5.2e-13 49.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|154150428|ref|YP_001404046.1| - 4.7e-10 39.3 0.2 1.1e-05 25.0 0.0 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|154150428|ref|YP_001404046.1| - 2.3e-09 36.9 0.1 1.8e-08 33.9 0.1 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|154150428|ref|YP_001404046.1| - 1.3e-07 31.3 0.0 1.1e-05 25.1 0.0 2.2 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|154150428|ref|YP_001404046.1| - 2.6e-06 27.1 0.3 1.7e-05 24.4 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MeaB PF03308.16 gi|154150428|ref|YP_001404046.1| - 0.00024 20.2 0.3 0.00063 18.8 0.1 1.7 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 gi|154150428|ref|YP_001404046.1| - 0.0004 20.2 0.1 0.0019 18.0 0.0 1.9 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_16 PF13191.6 gi|154150428|ref|YP_001404046.1| - 0.0011 19.4 0.0 0.0019 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|154150428|ref|YP_001404046.1| - 0.0012 18.6 0.0 0.0023 17.7 0.0 1.5 2 0 0 2 2 1 1 AAA domain APS_kinase PF01583.20 gi|154150428|ref|YP_001404046.1| - 0.0013 18.6 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase ABC_tran PF00005.27 gi|154150428|ref|YP_001404046.1| - 0.0016 18.9 0.0 0.0033 17.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SRP54 PF00448.22 gi|154150428|ref|YP_001404046.1| - 0.0025 17.5 0.4 0.016 14.9 0.1 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|154150428|ref|YP_001404046.1| - 0.0031 17.3 0.1 0.0055 16.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|154150428|ref|YP_001404046.1| - 0.0062 16.5 0.4 0.015 15.2 0.1 1.7 2 0 0 2 2 2 1 NTPase AAA_25 PF13481.6 gi|154150428|ref|YP_001404046.1| - 0.0079 15.8 0.1 0.034 13.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|154150428|ref|YP_001404046.1| - 0.011 16.2 0.0 0.017 15.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain MipZ PF09140.11 gi|154150428|ref|YP_001404046.1| - 0.016 14.5 0.1 0.035 13.4 0.1 1.4 1 0 0 1 1 1 0 ATPase MipZ NACHT PF05729.12 gi|154150428|ref|YP_001404046.1| - 0.019 14.9 0.2 0.039 13.9 0.2 1.4 1 0 0 1 1 1 0 NACHT domain PGM_PMM_II PF02879.16 gi|154150428|ref|YP_001404046.1| - 0.023 15.3 0.0 0.081 13.6 0.0 1.8 2 0 0 2 2 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IstB_IS21 PF01695.17 gi|154150428|ref|YP_001404046.1| - 0.024 14.4 0.1 0.082 12.6 0.0 1.8 3 0 0 3 3 2 0 IstB-like ATP binding protein TsaE PF02367.17 gi|154150428|ref|YP_001404046.1| - 0.029 14.3 0.2 7.8 6.5 0.0 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|154150428|ref|YP_001404046.1| - 0.034 13.3 0.1 0.054 12.7 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|154150428|ref|YP_001404046.1| - 0.039 14.0 0.0 0.073 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) KAP_NTPase PF07693.14 gi|154150428|ref|YP_001404046.1| - 0.069 12.4 0.0 0.069 12.4 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_22 PF13401.6 gi|154150428|ref|YP_001404046.1| - 0.072 13.4 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.9 gi|154150428|ref|YP_001404046.1| - 0.075 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 KTI12 PF08433.10 gi|154150428|ref|YP_001404046.1| - 0.096 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|154150428|ref|YP_001404046.1| - 0.1 12.9 0.1 0.2 11.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|154150428|ref|YP_001404046.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_10 PF12846.7 gi|154150428|ref|YP_001404046.1| - 0.13 11.2 0.0 0.52 9.2 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain Zeta_toxin PF06414.12 gi|154150428|ref|YP_001404046.1| - 0.13 11.5 0.1 0.36 10.1 0.1 1.7 1 0 0 1 1 1 0 Zeta toxin AAA_29 PF13555.6 gi|154150428|ref|YP_001404046.1| - 0.13 12.0 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|154150428|ref|YP_001404046.1| - 0.13 12.0 0.1 0.2 11.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system T2SSE PF00437.20 gi|154150428|ref|YP_001404046.1| - 0.16 11.0 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein VirC1 PF07015.11 gi|154150428|ref|YP_001404046.1| - 0.17 11.2 0.0 0.32 10.2 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein AAA_14 PF13173.6 gi|154150428|ref|YP_001404046.1| - 0.22 11.6 0.0 0.47 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain NUDIX PF00293.28 gi|154150429|ref|YP_001404047.1| - 1.6e-17 63.8 0.0 3.3e-17 62.7 0.0 1.5 2 0 0 2 2 2 1 NUDIX domain zf-NADH-PPase PF09297.11 gi|154150429|ref|YP_001404047.1| - 2.2e-11 43.2 5.3 4.9e-11 42.1 5.3 1.6 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|154150429|ref|YP_001404047.1| - 5.6e-05 23.0 1.2 0.00011 22.0 1.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|154150429|ref|YP_001404047.1| - 0.01 15.9 2.0 0.02 14.9 2.0 1.4 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|154150429|ref|YP_001404047.1| - 0.03 13.8 0.1 0.071 12.6 0.1 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|154150429|ref|YP_001404047.1| - 0.051 13.7 0.9 0.1 12.7 0.9 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|154150429|ref|YP_001404047.1| - 0.061 13.4 0.2 0.12 12.4 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NUDIX-like PF09296.11 gi|154150429|ref|YP_001404047.1| - 0.085 13.5 0.0 0.17 12.6 0.0 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase-like rudimentary NUDIX domain DNA_RNApol_7kD PF03604.13 gi|154150429|ref|YP_001404047.1| - 0.085 12.6 0.7 0.21 11.3 0.7 1.7 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-4CXXC_R1 PF10497.9 gi|154150429|ref|YP_001404047.1| - 0.097 12.9 0.7 0.18 12.1 0.7 1.3 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 zf-piccolo PF05715.13 gi|154150429|ref|YP_001404047.1| - 0.12 12.5 0.2 0.26 11.4 0.2 1.5 1 0 0 1 1 1 0 Piccolo Zn-finger Nudix_N_2 PF14803.6 gi|154150429|ref|YP_001404047.1| - 0.16 11.9 8.0 0.067 13.1 4.6 2.2 2 1 0 2 2 2 0 Nudix N-terminal DUF1451 PF07295.11 gi|154150429|ref|YP_001404047.1| - 0.46 10.5 1.4 0.8 9.7 1.4 1.4 1 0 0 1 1 1 0 Zinc-ribbon containing domain zinc_ribbon_2 PF13240.6 gi|154150429|ref|YP_001404047.1| - 5.8 6.8 5.8 7.2 6.5 0.8 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|154150429|ref|YP_001404047.1| - 8.4 6.2 10.0 40 4.1 8.7 2.4 1 1 1 2 2 2 0 Rubredoxin metal binding domain Response_reg PF00072.24 gi|154150430|ref|YP_001404048.1| - 1.9e-11 44.1 0.0 7.4e-11 42.2 0.0 2.1 1 0 0 1 1 1 1 Response regulator receiver domain HIP1_clath_bdg PF16515.5 gi|154150430|ref|YP_001404048.1| - 0.0096 16.5 4.6 0.0096 16.5 4.6 8.7 2 2 7 10 10 10 3 Clathrin-binding domain of Huntingtin-interacting protein 1 Img2 PF05046.14 gi|154150430|ref|YP_001404048.1| - 1.5 9.2 3.5 1e+02 3.3 0.1 4.0 3 1 1 4 4 4 0 Mitochondrial large subunit ribosomal protein (Img2) YdjM PF04307.14 gi|154150431|ref|YP_001404049.1| - 9.6e-14 51.1 3.2 1.8e-13 50.2 3.2 1.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4184 PF13803.6 gi|154150431|ref|YP_001404049.1| - 0.037 13.7 0.5 0.45 10.2 0.4 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) DUF2516 PF10724.9 gi|154150431|ref|YP_001404049.1| - 0.24 11.7 0.1 0.24 11.7 0.1 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2516) SBP_bac_11 PF13531.6 gi|154150433|ref|YP_001404051.1| - 8.9e-39 133.6 7.8 8.9e-39 133.6 7.8 1.8 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|154150433|ref|YP_001404051.1| - 8.2e-10 39.1 10.9 8.4e-10 39.1 9.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|154150433|ref|YP_001404051.1| - 2.5e-06 26.8 0.1 3.5e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_6 PF13343.6 gi|154150433|ref|YP_001404051.1| - 4.6e-05 22.9 1.2 7.6e-05 22.2 1.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4354 PF14263.6 gi|154150433|ref|YP_001404051.1| - 0.021 14.6 0.0 0.059 13.2 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4354) DUF4010 PF13194.6 gi|154150433|ref|YP_001404051.1| - 3.6 7.2 13.8 5.9 6.5 13.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) BPD_transp_1 PF00528.22 gi|154150434|ref|YP_001404052.1| - 2.3e-16 60.1 16.7 2.3e-16 60.1 16.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component HemY_N PF07219.13 gi|154150434|ref|YP_001404052.1| - 1 9.6 0.1 1 9.6 0.1 3.7 4 1 0 4 4 4 0 HemY protein N-terminus ABC_tran PF00005.27 gi|154150435|ref|YP_001404053.1| - 7.1e-32 110.8 0.0 9.8e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|154150435|ref|YP_001404053.1| - 2.9e-08 33.4 0.0 5.3e-07 29.3 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|154150435|ref|YP_001404053.1| - 4.3e-05 23.2 0.2 7.8e-05 22.3 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|154150435|ref|YP_001404053.1| - 8.7e-05 22.5 0.7 0.028 14.2 0.8 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|154150435|ref|YP_001404053.1| - 0.00044 20.4 0.7 0.0072 16.5 0.7 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|154150435|ref|YP_001404053.1| - 0.00045 20.0 0.0 0.00063 19.5 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|154150435|ref|YP_001404053.1| - 0.00078 20.0 0.0 0.0011 19.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|154150435|ref|YP_001404053.1| - 0.0011 19.3 0.1 0.011 16.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|154150435|ref|YP_001404053.1| - 0.0037 17.2 0.0 0.0065 16.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|154150435|ref|YP_001404053.1| - 0.0047 17.0 0.0 0.015 15.4 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase MukB PF04310.12 gi|154150435|ref|YP_001404053.1| - 0.019 14.8 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 MukB N-terminal T2SSE PF00437.20 gi|154150435|ref|YP_001404053.1| - 0.021 13.9 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|154150435|ref|YP_001404053.1| - 0.021 15.2 0.2 0.056 13.8 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|154150435|ref|YP_001404053.1| - 0.034 13.7 0.0 0.059 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|154150435|ref|YP_001404053.1| - 0.059 13.1 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|154150435|ref|YP_001404053.1| - 0.065 13.5 0.4 2.8 8.2 0.2 2.2 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|154150435|ref|YP_001404053.1| - 0.12 11.9 0.2 0.25 11.0 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|154150435|ref|YP_001404053.1| - 0.19 11.6 0.0 1.6 8.6 0.0 2.0 1 1 0 2 2 2 0 Rad17 P-loop domain PAS_8 PF13188.7 gi|154150436|ref|YP_001404054.1| - 3.9e-08 33.1 0.0 9.4e-08 31.9 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|154150436|ref|YP_001404054.1| - 0.00046 20.2 0.0 0.00072 19.5 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|154150436|ref|YP_001404054.1| - 0.0023 18.2 0.0 0.0057 16.9 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|154150436|ref|YP_001404054.1| - 0.015 15.6 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 PAS fold KdpA PF03814.15 gi|154150437|ref|YP_001404055.1| - 5e-231 767.7 33.6 5e-231 767.7 33.6 1.3 2 0 0 2 2 2 1 Potassium-transporting ATPase A subunit KdpC PF02669.15 gi|154150437|ref|YP_001404055.1| - 9e-74 247.2 0.2 1.8e-73 246.3 0.2 1.5 1 0 0 1 1 1 1 K+-transporting ATPase, c chain Hydrolase PF00702.26 gi|154150438|ref|YP_001404056.1| - 8.8e-32 111.1 2.8 1.5e-31 110.3 2.8 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|154150438|ref|YP_001404056.1| - 4.8e-27 94.6 1.0 4.8e-27 94.6 1.0 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase_3 PF08282.12 gi|154150438|ref|YP_001404056.1| - 5.3e-05 23.1 0.6 0.00015 21.6 0.1 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|154150438|ref|YP_001404056.1| - 0.0083 16.5 0.2 0.048 14.1 0.0 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Phage_holin_3_6 PF07332.11 gi|154150438|ref|YP_001404056.1| - 7.5 6.6 16.5 20 5.2 0.5 3.5 3 0 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III KdpD PF02702.17 gi|154150439|ref|YP_001404057.1| - 1.7e-96 321.7 0.6 2.5e-96 321.2 0.6 1.2 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain DUF4118 PF13493.6 gi|154150439|ref|YP_001404057.1| - 1.5e-28 98.7 10.1 3.1e-28 97.7 10.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) GAF_3 PF13492.6 gi|154150439|ref|YP_001404057.1| - 2.7e-12 47.2 0.1 2e-11 44.3 0.0 2.4 2 0 0 2 2 2 1 GAF domain Usp PF00582.26 gi|154150439|ref|YP_001404057.1| - 3.2e-07 31.0 0.1 5.2e-06 27.0 0.0 3.0 2 1 0 2 2 2 1 Universal stress protein family GAF_2 PF13185.6 gi|154150439|ref|YP_001404057.1| - 0.00047 20.5 0.4 0.011 16.0 0.2 3.2 2 1 0 2 2 2 1 GAF domain YbhQ PF11076.8 gi|154150439|ref|YP_001404057.1| - 0.76 9.8 4.5 2.6 8.0 4.5 1.9 1 1 0 1 1 1 0 Putative inner membrane protein YbhQ Phage_holin_3_6 PF07332.11 gi|154150440|ref|YP_001404058.1| - 4.2 7.5 14.6 4.9 7.2 14.6 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III COX7a PF02238.15 gi|154150440|ref|YP_001404058.1| - 4.9 7.6 6.4 0.88 10.0 0.8 2.1 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VII Trp_oprn_chp PF09534.10 gi|154150440|ref|YP_001404058.1| - 6.8 6.5 10.1 8.2 6.2 10.1 1.2 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3899 PF13038.6 gi|154150440|ref|YP_001404058.1| - 8.5 7.0 11.2 3.7 8.1 2.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) Glyco_trans_1_3 PF13528.6 gi|154150441|ref|YP_001404059.1| - 5.1e-09 35.8 0.0 0.0007 19.0 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.16 gi|154150441|ref|YP_001404059.1| - 4.2e-05 23.6 0.0 6.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_4 PF13439.6 gi|154150441|ref|YP_001404059.1| - 6.4e-05 23.0 0.2 0.00045 20.3 0.2 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 DUF45 PF01863.17 gi|154150442|ref|YP_001404060.1| - 2.2e-57 194.4 0.1 2.6e-57 194.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|154150442|ref|YP_001404060.1| - 0.0046 17.0 0.0 0.0074 16.4 0.0 1.2 1 0 0 1 1 1 1 WLM domain Peptidase_M56 PF05569.11 gi|154150442|ref|YP_001404060.1| - 0.12 11.5 0.1 0.19 10.9 0.1 1.2 1 0 0 1 1 1 0 BlaR1 peptidase M56 Response_reg PF00072.24 gi|154150443|ref|YP_001404061.1| - 2.9e-25 88.6 0.1 3.3e-25 88.4 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Peptidase_M75 PF09375.10 gi|154150444|ref|YP_001404062.1| - 0.056 12.9 0.1 0.057 12.9 0.1 1.2 1 0 0 1 1 1 0 Imelysin FMN_red PF03358.15 gi|154150446|ref|YP_001404064.1| - 2e-07 30.8 0.0 2.4e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.7 gi|154150446|ref|YP_001404064.1| - 1.1e-06 29.0 0.0 5.8e-05 23.4 0.0 2.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|154150446|ref|YP_001404064.1| - 5.4e-05 23.4 0.0 0.0016 18.7 0.0 2.1 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.17 gi|154150446|ref|YP_001404064.1| - 0.055 13.2 0.0 0.063 13.0 0.0 1.4 1 1 0 1 1 1 0 Flavodoxin-like fold Flavodoxin_3 PF12641.7 gi|154150446|ref|YP_001404064.1| - 0.063 13.0 0.0 0.13 11.9 0.0 1.5 1 1 0 1 1 1 0 Flavodoxin domain Flavodoxin_4 PF12682.7 gi|154150446|ref|YP_001404064.1| - 0.12 12.1 0.1 0.22 11.2 0.1 1.7 1 1 0 1 1 1 0 Flavodoxin PTH2 PF01981.16 gi|154150448|ref|YP_001404066.1| - 1.4e-36 125.3 0.0 1.6e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Phage_portal PF04860.12 gi|154150448|ref|YP_001404066.1| - 0.063 12.5 0.0 0.068 12.4 0.0 1.1 1 0 0 1 1 1 0 Phage portal protein TruD PF01142.18 gi|154150449|ref|YP_001404067.1| - 4.1e-137 457.4 0.0 4.6e-137 457.2 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Peptidase_S49 PF01343.18 gi|154150450|ref|YP_001404068.1| - 9.2e-37 126.4 1.3 1.2e-36 126.0 1.3 1.1 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|154150450|ref|YP_001404068.1| - 0.0087 16.0 0.3 0.032 14.1 0.0 1.9 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.16 gi|154150450|ref|YP_001404068.1| - 0.011 14.8 0.1 0.018 14.0 0.1 1.3 1 0 0 1 1 1 0 Serine dehydrogenase proteinase ZirS_C PF16583.5 gi|154150450|ref|YP_001404068.1| - 0.042 13.4 0.1 0.08 12.5 0.1 1.4 1 0 0 1 1 1 0 Zinc-regulated secreted antivirulence protein C-terminal domain Diphtheria_R PF01324.19 gi|154150450|ref|YP_001404068.1| - 0.13 11.9 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Diphtheria toxin, R domain Big_3_3 PF13750.6 gi|154150450|ref|YP_001404068.1| - 0.14 11.8 0.3 0.35 10.5 0.1 1.7 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) RibD_C PF01872.17 gi|154150451|ref|YP_001404069.1| - 1.8e-43 148.7 0.0 2e-43 148.5 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain CDP-OH_P_transf PF01066.21 gi|154150452|ref|YP_001404070.1| - 7.5e-14 52.2 1.7 7.5e-14 52.2 1.7 2.2 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Exosortase_EpsH PF09721.10 gi|154150453|ref|YP_001404071.1| - 3.7e-10 39.8 24.5 7.8e-10 38.7 24.5 1.5 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) TFIIS_C PF01096.18 gi|154150454|ref|YP_001404072.1| - 1.7e-17 62.9 11.2 2.8e-17 62.3 2.6 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|154150454|ref|YP_001404072.1| - 2.7e-09 36.7 11.1 1.2e-08 34.7 1.7 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|154150454|ref|YP_001404072.1| - 1.6e-06 27.5 6.9 0.001 18.5 0.2 2.9 2 1 0 2 2 2 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|154150454|ref|YP_001404072.1| - 7.8e-06 25.8 7.1 0.0015 18.5 0.6 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|154150454|ref|YP_001404072.1| - 6.1e-05 22.3 9.5 0.0028 17.0 0.7 3.3 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|154150454|ref|YP_001404072.1| - 0.00029 20.7 16.0 0.13 12.2 0.5 4.1 3 1 0 3 3 3 2 zinc-ribbon domain TackOD1 PF18551.1 gi|154150454|ref|YP_001404072.1| - 0.0017 18.1 7.8 0.0083 15.8 0.3 2.7 2 1 0 2 2 2 1 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|154150454|ref|YP_001404072.1| - 0.002 18.1 7.2 0.075 13.0 0.7 2.6 2 1 1 3 3 3 2 zinc-ribbons zf-TFIIB PF13453.6 gi|154150454|ref|YP_001404072.1| - 0.0025 17.1 0.4 0.0025 17.1 0.4 2.8 2 1 0 2 2 2 1 Transcription factor zinc-finger DZR PF12773.7 gi|154150454|ref|YP_001404072.1| - 0.0042 17.1 9.4 0.055 13.5 0.5 3.0 2 1 0 2 2 2 1 Double zinc ribbon Mu-like_Com PF10122.9 gi|154150454|ref|YP_001404072.1| - 0.008 15.6 9.1 0.24 10.9 0.1 3.2 3 1 0 3 3 3 2 Mu-like prophage protein Com DNA_RNApol_7kD PF03604.13 gi|154150454|ref|YP_001404072.1| - 0.0098 15.5 11.8 0.36 10.5 1.0 3.4 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|154150454|ref|YP_001404072.1| - 0.011 15.9 11.7 3.4 7.9 0.4 4.2 3 1 1 4 4 4 0 Zinc ribbon domain UPF0547 PF10571.9 gi|154150454|ref|YP_001404072.1| - 0.013 15.6 14.4 4.2 7.5 0.8 4.1 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-ACC PF17848.1 gi|154150454|ref|YP_001404072.1| - 0.023 14.8 13.0 1.2 9.2 0.5 4.2 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Ogr_Delta PF04606.12 gi|154150454|ref|YP_001404072.1| - 0.034 14.1 0.2 0.034 14.1 0.2 2.8 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger zf-LITAF-like PF10601.9 gi|154150454|ref|YP_001404072.1| - 0.05 13.9 4.8 4.1 7.7 0.0 3.7 4 0 0 4 4 4 0 LITAF-like zinc ribbon domain zf-AN1 PF01428.16 gi|154150454|ref|YP_001404072.1| - 0.052 13.7 8.4 8.5 6.6 1.7 3.2 3 0 0 3 3 3 0 AN1-like Zinc finger zf-DNA_Pol PF08996.10 gi|154150454|ref|YP_001404072.1| - 0.066 12.9 3.0 0.069 12.9 0.2 2.0 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger OrfB_Zn_ribbon PF07282.11 gi|154150454|ref|YP_001404072.1| - 0.077 12.9 10.8 0.99 9.4 1.0 2.9 2 1 0 2 2 2 0 Putative transposase DNA-binding domain DUF2387 PF09526.10 gi|154150454|ref|YP_001404072.1| - 0.087 13.0 9.6 0.088 13.0 0.1 2.9 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Nudix_N_2 PF14803.6 gi|154150454|ref|YP_001404072.1| - 0.097 12.6 8.3 5.1 7.1 1.3 3.9 3 1 0 3 3 3 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|154150454|ref|YP_001404072.1| - 0.098 12.4 15.5 7 6.5 0.2 4.3 4 0 0 4 4 4 0 zinc-ribbon domain Hepsin-SRCR PF09272.10 gi|154150454|ref|YP_001404072.1| - 0.1 13.1 1.7 0.27 11.8 1.7 1.8 1 1 0 1 1 1 0 Hepsin, SRCR domain zf-RING_7 PF02591.15 gi|154150454|ref|YP_001404072.1| - 0.11 12.8 6.0 3.6 7.9 0.0 3.4 4 0 0 4 4 3 0 C4-type zinc ribbon domain zf-RING_5 PF14634.6 gi|154150454|ref|YP_001404072.1| - 0.21 11.6 8.1 0.32 11.0 1.0 2.7 2 1 1 3 3 3 0 zinc-RING finger domain HypA PF01155.19 gi|154150454|ref|YP_001404072.1| - 0.31 11.1 10.0 0.22 11.6 0.8 2.8 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PADR1 PF08063.12 gi|154150454|ref|YP_001404072.1| - 0.34 10.7 7.3 4 7.3 0.7 3.1 3 0 0 3 3 3 0 PADR1 (NUC008) domain Ribosomal_S27e PF01667.17 gi|154150454|ref|YP_001404072.1| - 0.5 10.1 9.4 1.6 8.5 0.2 3.5 3 1 0 3 3 3 0 Ribosomal protein S27 Zn_Tnp_IS1 PF03811.13 gi|154150454|ref|YP_001404072.1| - 0.61 9.9 0.1 0.61 9.9 0.1 3.7 3 1 0 3 3 2 0 InsA N-terminal domain zf-PHD-like PF15446.6 gi|154150454|ref|YP_001404072.1| - 0.79 9.3 7.9 1.8 8.2 1.9 2.2 1 1 1 2 2 2 0 PHD/FYVE-zinc-finger like domain DUF35_N PF12172.8 gi|154150454|ref|YP_001404072.1| - 0.79 9.7 9.4 4.7 7.2 0.1 3.9 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_UBZ PF18439.1 gi|154150454|ref|YP_001404072.1| - 0.99 9.1 9.1 30 4.3 0.1 4.0 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-Mss51 PF13824.6 gi|154150454|ref|YP_001404072.1| - 1 9.5 7.3 8.6 6.6 0.8 2.8 1 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_13 PF09855.9 gi|154150454|ref|YP_001404072.1| - 1.1 9.5 6.2 27 5.0 0.0 3.4 4 0 0 4 4 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) FYVE PF01363.21 gi|154150454|ref|YP_001404072.1| - 1.2 9.4 7.0 27 5.0 7.0 2.4 1 1 0 1 1 1 0 FYVE zinc finger A2L_zn_ribbon PF08792.10 gi|154150454|ref|YP_001404072.1| - 1.5 8.6 12.9 12 5.8 0.0 4.0 3 1 1 4 4 4 0 A2L zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|154150454|ref|YP_001404072.1| - 2.4 8.0 14.4 30 4.5 0.2 4.0 3 1 0 3 3 3 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|154150454|ref|YP_001404072.1| - 2.6 8.1 13.4 11 6.1 3.1 3.8 3 1 0 3 3 3 0 PhnA Zinc-Ribbon CpXC PF14353.6 gi|154150454|ref|YP_001404072.1| - 2.6 8.1 11.6 13 5.8 1.7 3.5 1 1 2 3 3 3 0 CpXC protein DUF3795 PF12675.7 gi|154150454|ref|YP_001404072.1| - 2.9 8.4 9.4 0.35 11.3 4.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3795) Baculo_LEF5_C PF11792.8 gi|154150454|ref|YP_001404072.1| - 4.4 7.1 7.8 2.2 8.0 0.1 3.0 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-3CxxC_2 PF17180.4 gi|154150454|ref|YP_001404072.1| - 4.4 8.1 14.5 5.4 7.8 1.2 3.5 1 1 2 3 3 3 0 Zinc-binding domain Rpr2 PF04032.16 gi|154150454|ref|YP_001404072.1| - 5.8 7.3 10.1 9.9 6.5 5.1 2.8 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-C4_Topoisom PF01396.19 gi|154150454|ref|YP_001404072.1| - 8 6.3 14.9 1.4 8.8 0.2 3.6 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Folate_carrier PF01770.18 gi|154150455|ref|YP_001404073.1| - 0.027 13.2 0.6 0.037 12.8 0.6 1.3 1 1 0 1 1 1 0 Reduced folate carrier Exonuc_VII_L PF02601.15 gi|154150455|ref|YP_001404073.1| - 0.037 13.6 4.6 0.051 13.1 4.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit Lebercilin PF15619.6 gi|154150455|ref|YP_001404073.1| - 0.057 13.1 19.2 0.086 12.5 19.0 1.5 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Phage_GPO PF05929.11 gi|154150455|ref|YP_001404073.1| - 0.06 13.0 8.1 0.15 11.6 1.8 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase PhoU PF01895.19 gi|154150455|ref|YP_001404073.1| - 0.083 13.4 3.3 0.17 12.3 2.4 2.1 1 1 1 2 2 2 0 PhoU domain TSNAXIP1_N PF15739.5 gi|154150455|ref|YP_001404073.1| - 0.089 13.2 0.6 0.089 13.2 0.6 2.3 1 1 1 2 2 2 0 Translin-associated factor X-interacting N-terminus DUF4407 PF14362.6 gi|154150455|ref|YP_001404073.1| - 0.099 12.0 5.4 0.027 13.8 1.6 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) UPF0242 PF06785.11 gi|154150455|ref|YP_001404073.1| - 0.1 12.7 14.2 0.22 11.6 14.2 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Spc7 PF08317.11 gi|154150455|ref|YP_001404073.1| - 0.15 10.9 12.0 0.23 10.3 12.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4349 PF14257.6 gi|154150455|ref|YP_001404073.1| - 0.29 10.5 3.0 0.52 9.7 3.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) DUF4131 PF13567.6 gi|154150455|ref|YP_001404073.1| - 0.3 10.7 0.9 0.43 10.2 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) zf-RING_9 PF13901.6 gi|154150455|ref|YP_001404073.1| - 0.32 11.0 1.5 0.47 10.4 1.5 1.2 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon Muted PF14942.6 gi|154150455|ref|YP_001404073.1| - 0.47 10.8 15.8 1.3 9.4 15.9 1.7 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein FapA PF03961.13 gi|154150455|ref|YP_001404073.1| - 0.73 8.4 7.7 1.1 7.7 7.7 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A Atg14 PF10186.9 gi|154150455|ref|YP_001404073.1| - 1.1 8.3 9.2 1.8 7.6 9.2 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Bap31_Bap29_C PF18035.1 gi|154150455|ref|YP_001404073.1| - 2.6 8.1 13.7 7.3 6.7 9.6 2.8 2 1 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain Phage_GP20 PF06810.11 gi|154150455|ref|YP_001404073.1| - 2.6 7.8 12.2 16 5.3 11.9 2.3 1 1 0 1 1 1 0 Phage minor structural protein GP20 FlxA PF14282.6 gi|154150455|ref|YP_001404073.1| - 3.6 7.6 14.7 4.6 7.3 14.2 1.4 1 1 0 1 1 1 0 FlxA-like protein DUF2207 PF09972.9 gi|154150455|ref|YP_001404073.1| - 3.7 6.2 11.2 0.076 11.8 3.5 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) AAA_23 PF13476.6 gi|154150455|ref|YP_001404073.1| - 4.2 7.8 12.5 10 6.5 12.7 1.5 1 1 0 1 1 1 0 AAA domain CREPT PF16566.5 gi|154150455|ref|YP_001404073.1| - 4.5 7.5 11.6 42 4.3 0.1 2.3 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Sigma_reg_N PF13800.6 gi|154150455|ref|YP_001404073.1| - 8.5 6.7 6.9 26 5.2 0.5 2.6 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Response_reg PF00072.24 gi|154150456|ref|YP_001404074.1| - 1.5e-16 60.5 0.0 1.7e-16 60.4 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ATP-grasp_5 PF13549.6 gi|154150457|ref|YP_001404075.1| - 3.7e-66 222.8 0.2 5.3e-66 222.3 0.2 1.2 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|154150457|ref|YP_001404075.1| - 2.2e-52 176.5 0.2 4e-52 175.7 0.2 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|154150457|ref|YP_001404075.1| - 7.6e-27 94.1 0.3 2.8e-26 92.3 0.2 2.1 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|154150457|ref|YP_001404075.1| - 2.1e-13 50.8 1.3 7.6e-13 49.0 0.4 2.4 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|154150457|ref|YP_001404075.1| - 0.0021 17.7 0.2 0.0036 16.9 0.2 1.5 1 1 0 1 1 1 1 ATP-grasp domain YIEGIA PF14045.6 gi|154150457|ref|YP_001404075.1| - 0.065 12.1 0.0 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 YIEGIA protein AMP-binding PF00501.28 gi|154150458|ref|YP_001404076.1| - 6.7e-96 321.5 0.1 8.3e-96 321.1 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|154150458|ref|YP_001404076.1| - 3.2e-27 95.3 0.1 9.4e-27 93.8 0.1 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|154150458|ref|YP_001404076.1| - 1e-18 66.9 8.0 2.8e-18 65.6 8.0 1.8 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus TBP PF00352.21 gi|154150459|ref|YP_001404077.1| - 1.2e-52 175.7 0.0 1.5e-26 92.2 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|154150459|ref|YP_001404077.1| - 1.3e-06 28.4 0.0 0.049 13.8 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) NdhS PF11623.8 gi|154150459|ref|YP_001404077.1| - 0.034 13.8 0.0 6.6 6.5 0.0 2.4 2 0 0 2 2 2 0 NAD(P)H dehydrogenase subunit S DUF677 PF05055.12 gi|154150459|ref|YP_001404077.1| - 0.062 12.2 0.0 0.09 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) TrmB PF01978.19 gi|154150460|ref|YP_001404078.1| - 0.00026 20.8 0.0 0.00037 20.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|154150460|ref|YP_001404078.1| - 0.00027 20.8 0.0 0.00039 20.2 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|154150460|ref|YP_001404078.1| - 0.014 15.3 0.0 0.029 14.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF3189 PF11385.8 gi|154150460|ref|YP_001404078.1| - 0.037 13.9 0.0 0.052 13.4 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3189) Rib_5-P_isom_A PF06026.14 gi|154150461|ref|YP_001404079.1| - 7.6e-59 198.2 0.0 9.2e-59 197.9 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|154150461|ref|YP_001404079.1| - 2.9e-06 27.3 0.0 5.6e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|154150461|ref|YP_001404079.1| - 0.029 13.5 0.1 0.051 12.7 0.1 1.4 1 0 0 1 1 1 0 Putative sugar-binding domain WG_beta_rep PF14903.6 gi|154150461|ref|YP_001404079.1| - 0.095 13.0 0.0 0.24 11.7 0.0 1.8 1 0 0 1 1 1 0 WG containing repeat SurE PF01975.17 gi|154150462|ref|YP_001404080.1| - 3.8e-51 173.6 0.4 4.7e-51 173.4 0.4 1.1 1 0 0 1 1 1 1 Survival protein SurE ATP-grasp_3 PF02655.14 gi|154150463|ref|YP_001404081.1| - 1.1e-27 97.1 0.0 3.6e-27 95.4 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|154150463|ref|YP_001404081.1| - 0.0014 18.9 0.0 0.0071 16.6 0.0 2.1 2 1 0 2 2 2 1 pre ATP-grasp 3 domain Dala_Dala_lig_C PF07478.13 gi|154150463|ref|YP_001404081.1| - 0.017 14.6 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|154150463|ref|YP_001404081.1| - 0.065 13.0 0.0 0.34 10.7 0.0 2.0 1 1 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|154150463|ref|YP_001404081.1| - 0.074 12.5 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain PRA-PH PF01503.17 gi|154150463|ref|YP_001404081.1| - 0.13 12.8 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase Hydantoinase_A PF01968.18 gi|154150464|ref|YP_001404082.1| - 3.4e-15 56.1 0.0 7.8e-15 54.9 0.0 1.7 1 1 0 1 1 1 1 Hydantoinase/oxoprolinase DZR PF12773.7 gi|154150465|ref|YP_001404083.1| - 0.046 13.8 0.0 0.11 12.5 0.0 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|154150465|ref|YP_001404083.1| - 0.06 12.8 1.3 1.7 8.2 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|154150465|ref|YP_001404083.1| - 0.067 13.1 5.9 2.4 8.1 0.6 3.0 3 0 0 3 3 3 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|154150465|ref|YP_001404083.1| - 0.11 12.3 3.0 5.8 6.8 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|154150465|ref|YP_001404083.1| - 0.12 12.4 1.5 0.41 10.7 1.5 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Toxin-deaminase PF14424.6 gi|154150465|ref|YP_001404083.1| - 0.12 12.5 0.6 6.3 6.9 0.1 2.3 1 1 1 2 2 2 0 The BURPS668_1122 family of deaminases CxC4 PF18717.1 gi|154150465|ref|YP_001404083.1| - 0.14 12.0 0.0 0.89 9.4 0.0 1.9 2 0 0 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn-ribbon_8 PF09723.10 gi|154150465|ref|YP_001404083.1| - 0.17 12.1 0.6 4.5 7.5 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|154150465|ref|YP_001404083.1| - 0.23 11.4 0.6 1.5 8.8 0.1 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-ISL3 PF14690.6 gi|154150465|ref|YP_001404083.1| - 0.37 11.5 2.9 0.91 10.2 2.9 1.7 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.12 gi|154150465|ref|YP_001404083.1| - 0.42 10.2 5.5 2.5 7.7 0.0 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|154150465|ref|YP_001404083.1| - 0.56 10.3 2.5 19 5.5 0.1 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Molybdopterin PF00384.22 gi|154150466|ref|YP_001404084.1| - 9.4e-69 232.4 1.7 1.2e-68 232.1 1.7 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|154150466|ref|YP_001404084.1| - 7.4e-19 67.5 1.7 1.9e-18 66.2 0.5 2.1 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.21 gi|154150466|ref|YP_001404084.1| - 3.4e-12 46.4 0.1 1.1e-11 44.8 0.1 1.9 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain ZnuA PF01297.17 gi|154150466|ref|YP_001404084.1| - 0.067 12.6 0.1 0.24 10.8 0.0 2.0 1 1 1 2 2 2 0 Zinc-uptake complex component A periplasmic FrhB_FdhB_C PF04432.13 gi|154150467|ref|YP_001404085.1| - 1.9e-34 118.8 0.2 1.9e-34 118.8 0.2 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|154150467|ref|YP_001404085.1| - 1.8e-20 72.9 0.0 3.2e-20 72.0 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|154150467|ref|YP_001404085.1| - 3e-06 26.8 17.4 0.0015 18.3 2.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|154150467|ref|YP_001404085.1| - 5.5e-06 26.4 15.8 0.00065 19.8 0.0 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154150467|ref|YP_001404085.1| - 8.3e-06 26.3 16.4 1.3e-05 25.6 13.6 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154150467|ref|YP_001404085.1| - 3.2e-05 23.8 17.9 0.0083 16.2 2.0 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|154150467|ref|YP_001404085.1| - 9.3e-05 22.8 15.8 0.00017 21.9 14.2 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|154150467|ref|YP_001404085.1| - 0.00015 22.3 16.7 0.00015 22.3 16.7 2.6 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150467|ref|YP_001404085.1| - 0.00074 19.6 19.0 0.0053 16.9 16.1 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150467|ref|YP_001404085.1| - 0.036 14.6 1.6 0.036 14.6 1.6 3.8 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|154150467|ref|YP_001404085.1| - 0.046 14.6 21.3 0.4 11.6 0.4 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154150467|ref|YP_001404085.1| - 0.11 12.6 22.0 0.38 10.9 3.1 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|154150467|ref|YP_001404085.1| - 0.14 12.3 11.3 1.1 9.4 1.5 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154150467|ref|YP_001404085.1| - 0.2 12.6 0.3 0.2 12.6 0.3 3.5 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|154150467|ref|YP_001404085.1| - 0.23 12.0 17.0 1.5 9.4 3.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|154150467|ref|YP_001404085.1| - 0.93 9.7 26.8 0.087 12.9 1.6 3.7 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|154150467|ref|YP_001404085.1| - 1.1 10.0 7.1 14 6.5 0.6 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Cupredoxin_1 PF13473.6 gi|154150468|ref|YP_001404086.1| - 1.9e-09 37.6 0.0 2.5e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|154150468|ref|YP_001404086.1| - 5.1e-05 23.6 0.0 0.00015 22.1 0.0 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family zf-ACC PF17848.1 gi|154150469|ref|YP_001404087.1| - 0.00045 20.2 3.5 0.52 10.4 0.0 2.3 2 0 0 2 2 2 2 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 gi|154150469|ref|YP_001404087.1| - 0.0021 17.4 1.0 0.84 9.1 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|154150469|ref|YP_001404087.1| - 0.0024 18.2 0.4 0.0033 17.8 0.4 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF2387 PF09526.10 gi|154150469|ref|YP_001404087.1| - 0.0042 17.2 0.1 0.0056 16.8 0.1 1.2 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Ribosomal_S27e PF01667.17 gi|154150469|ref|YP_001404087.1| - 0.015 15.0 0.2 0.026 14.2 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zf-Mss51 PF13824.6 gi|154150469|ref|YP_001404087.1| - 0.023 14.8 4.2 1.6 8.9 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 CpXC PF14353.6 gi|154150469|ref|YP_001404087.1| - 0.03 14.4 0.2 1.6 8.8 0.1 2.1 2 0 0 2 2 2 0 CpXC protein NMD3 PF04981.13 gi|154150469|ref|YP_001404087.1| - 0.032 13.7 0.1 0.043 13.3 0.1 1.2 1 0 0 1 1 1 0 NMD3 family Elf1 PF05129.13 gi|154150469|ref|YP_001404087.1| - 0.035 14.2 0.3 0.044 13.8 0.1 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf_UBZ PF18439.1 gi|154150469|ref|YP_001404087.1| - 0.05 13.2 0.2 0.05 13.2 0.2 2.4 2 1 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-NADH-PPase PF09297.11 gi|154150469|ref|YP_001404087.1| - 0.097 12.3 2.8 7.3 6.4 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|154150469|ref|YP_001404087.1| - 0.17 11.6 0.7 1.1 9.0 0.7 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|154150469|ref|YP_001404087.1| - 0.26 11.5 2.1 3 8.0 0.0 2.4 2 1 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|154150469|ref|YP_001404087.1| - 0.41 11.2 3.6 1.6 9.3 0.2 2.4 1 1 1 2 2 2 0 Zinc-finger double domain DUF1610 PF07754.11 gi|154150469|ref|YP_001404087.1| - 0.68 10.0 3.4 6.9 6.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|154150469|ref|YP_001404087.1| - 1.8 8.4 6.1 3.7 7.4 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|154150469|ref|YP_001404087.1| - 5.5 7.0 8.1 11 6.1 4.4 2.5 2 1 0 2 2 2 0 zinc-ribbon domain E1-E2_ATPase PF00122.20 gi|154150470|ref|YP_001404088.1| - 1.2e-55 187.9 1.2 1.2e-55 187.9 1.2 3.5 4 1 1 5 5 5 1 E1-E2 ATPase Hydrolase PF00702.26 gi|154150470|ref|YP_001404088.1| - 1.4e-21 77.8 2.7 2.5e-21 76.9 2.3 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|154150470|ref|YP_001404088.1| - 2.8e-09 36.5 0.0 2.8e-09 36.5 0.0 2.5 3 0 0 3 3 3 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|154150470|ref|YP_001404088.1| - 4.5e-05 23.3 0.7 0.0008 19.2 0.3 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|154150470|ref|YP_001404088.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Cation transport ATPase (P-type) Gate PF07670.14 gi|154150470|ref|YP_001404088.1| - 6.7 7.0 16.0 1.5 9.1 2.3 2.8 2 0 0 2 2 2 0 Nucleoside recognition Voltage_CLC PF00654.20 gi|154150471|ref|YP_001404089.1| - 1.7e-80 271.0 37.8 1.7e-80 271.0 37.8 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|154150471|ref|YP_001404089.1| - 1.2e-21 76.9 4.7 1.2e-10 41.7 0.5 2.7 2 0 0 2 2 2 2 CBS domain DUF2154 PF09922.9 gi|154150471|ref|YP_001404089.1| - 0.094 12.6 0.1 0.23 11.3 0.1 1.6 1 0 0 1 1 1 0 Cell wall-active antibiotics response 4TMS YvqF DUF190 PF02641.15 gi|154150472|ref|YP_001404090.1| - 1.7e-32 111.6 0.1 1.9e-32 111.5 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CRCB PF02537.15 gi|154150473|ref|YP_001404091.1| - 1.4e-22 79.8 8.0 1.7e-22 79.5 8.0 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) CRCB PF02537.15 gi|154150474|ref|YP_001404092.1| - 6.7e-17 61.6 14.1 8.2e-17 61.3 14.1 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) Enolase_N PF03952.16 gi|154150475|ref|YP_001404093.1| - 1.2e-08 35.2 0.0 1.2e-08 35.1 0.0 1.0 1 0 0 1 1 1 1 Enolase, N-terminal domain Dynamin_N PF00350.23 gi|154150476|ref|YP_001404094.1| - 3.9e-24 85.6 0.0 1e-23 84.2 0.0 1.7 1 0 0 1 1 1 1 Dynamin family MMR_HSR1 PF01926.23 gi|154150476|ref|YP_001404094.1| - 1.7e-11 44.2 0.1 3.8e-10 39.9 0.1 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|154150476|ref|YP_001404094.1| - 6.2e-05 23.0 0.0 0.3 11.0 0.0 3.2 3 1 0 3 3 3 2 RsgA GTPase GTP_EFTU PF00009.27 gi|154150476|ref|YP_001404094.1| - 0.00017 21.2 0.0 0.016 14.8 0.0 2.9 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain IIGP PF05049.13 gi|154150476|ref|YP_001404094.1| - 0.00023 20.3 0.0 0.00061 18.9 0.0 1.6 2 0 0 2 2 2 1 Interferon-inducible GTPase (IIGP) AIG1 PF04548.16 gi|154150476|ref|YP_001404094.1| - 0.025 13.9 0.1 0.52 9.6 0.1 2.3 1 1 1 2 2 2 0 AIG1 family FeoB_N PF02421.18 gi|154150476|ref|YP_001404094.1| - 0.061 12.9 0.0 1.8 8.1 0.0 2.4 1 1 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.18 gi|154150476|ref|YP_001404094.1| - 0.17 11.2 0.0 7.7 5.7 0.0 2.5 2 0 0 2 2 2 0 Septin V4R PF02830.18 gi|154150477|ref|YP_001404095.1| - 7.1e-12 45.2 0.5 7.1e-12 45.2 0.5 1.5 2 0 0 2 2 2 1 V4R domain XylR_N PF06505.11 gi|154150477|ref|YP_001404095.1| - 0.023 14.4 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 Activator of aromatic catabolism ATC_hydrolase PF14196.6 gi|154150477|ref|YP_001404095.1| - 0.027 15.2 1.1 0.17 12.6 1.1 1.9 1 1 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase HATPase_c PF02518.26 gi|154150478|ref|YP_001404096.1| - 1.6e-15 57.6 0.0 3e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|154150478|ref|YP_001404096.1| - 0.0064 16.4 0.0 0.019 14.9 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|154150478|ref|YP_001404096.1| - 0.07 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|154150478|ref|YP_001404096.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 GHKL domain DivIC PF04977.15 gi|154150478|ref|YP_001404096.1| - 0.51 10.1 2.5 0.96 9.3 2.5 1.4 1 0 0 1 1 1 0 Septum formation initiator PAS_9 PF13426.7 gi|154150479|ref|YP_001404097.1| - 7.8e-61 202.8 0.0 2e-09 37.6 0.0 6.7 6 0 0 6 6 6 6 PAS domain PAS_3 PF08447.12 gi|154150479|ref|YP_001404097.1| - 1.5e-52 175.8 0.1 7.9e-16 58.1 0.1 6.5 6 0 0 6 6 6 6 PAS fold PAS PF00989.25 gi|154150479|ref|YP_001404097.1| - 1.5e-46 157.0 0.1 1.9e-11 43.9 0.0 7.4 5 1 2 7 7 7 6 PAS fold PAS_4 PF08448.10 gi|154150479|ref|YP_001404097.1| - 9.5e-43 144.9 3.5 1.8e-09 37.9 0.0 6.6 6 0 0 6 6 6 5 PAS fold PAS_8 PF13188.7 gi|154150479|ref|YP_001404097.1| - 4e-35 119.2 0.7 9.3e-07 28.7 0.0 6.7 6 0 0 6 6 6 6 PAS domain HisKA_2 PF07568.12 gi|154150479|ref|YP_001404097.1| - 2.6e-26 91.5 2.4 8.9e-26 89.8 2.4 2.0 1 0 0 1 1 1 1 Histidine kinase GAF_2 PF13185.6 gi|154150479|ref|YP_001404097.1| - 2.1e-23 83.1 0.0 1.3e-22 80.6 0.0 2.3 2 0 0 2 2 2 1 GAF domain PAS_11 PF14598.6 gi|154150479|ref|YP_001404097.1| - 4.6e-08 33.2 0.0 0.016 15.3 0.0 4.1 4 0 0 4 4 4 2 PAS domain HWE_HK PF07536.14 gi|154150479|ref|YP_001404097.1| - 2e-07 31.6 1.6 1.4e-06 28.9 0.5 2.6 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c PF02518.26 gi|154150479|ref|YP_001404097.1| - 2.3e-07 31.3 0.0 1.3e-06 28.9 0.0 2.4 2 1 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|154150479|ref|YP_001404097.1| - 0.00016 21.6 0.0 0.00045 20.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|154150479|ref|YP_001404097.1| - 0.0009 19.8 0.1 0.43 11.2 0.0 3.9 4 0 0 4 4 4 1 PAS domain DUF4262 PF14081.6 gi|154150479|ref|YP_001404097.1| - 0.0021 18.3 0.0 0.038 14.2 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4262) GAF PF01590.26 gi|154150479|ref|YP_001404097.1| - 0.034 14.8 0.0 0.13 12.9 0.0 2.1 1 0 0 1 1 1 0 GAF domain SPOB_a PF14689.6 gi|154150479|ref|YP_001404097.1| - 0.14 11.9 3.0 0.39 10.5 3.0 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF87 PF01935.17 gi|154150480|ref|YP_001404098.1| - 1e-24 87.9 0.0 1.4e-24 87.4 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|154150480|ref|YP_001404098.1| - 0.0018 17.0 0.3 0.01 14.5 0.0 2.2 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|154150480|ref|YP_001404098.1| - 0.003 16.5 0.0 0.0061 15.5 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|154150480|ref|YP_001404098.1| - 0.033 13.5 0.3 0.14 11.5 0.1 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|154150480|ref|YP_001404098.1| - 0.064 12.2 0.1 2.5 7.0 0.1 2.2 2 0 0 2 2 2 0 AAA-like domain NurA PF09376.10 gi|154150481|ref|YP_001404099.1| - 3.4e-11 43.3 0.0 3.6e-10 39.9 0.0 2.0 1 1 0 1 1 1 1 NurA domain SMC_N PF02463.19 gi|154150482|ref|YP_001404100.1| - 1.5e-20 73.6 0.0 4.8e-20 71.9 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|154150482|ref|YP_001404100.1| - 1.6e-10 41.2 0.3 8.4e-10 38.9 0.0 2.3 2 2 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|154150482|ref|YP_001404100.1| - 4.2e-10 40.5 42.1 1.5e-05 25.6 42.2 4.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|154150482|ref|YP_001404100.1| - 5e-07 29.4 0.0 1e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|154150482|ref|YP_001404100.1| - 2.9e-05 24.0 0.7 0.01 15.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|154150482|ref|YP_001404100.1| - 6.3e-05 23.1 2.3 6.6e-05 23.1 0.1 2.2 2 1 1 3 3 2 1 Putative exonuclease SbcCD, C subunit DUF2813 PF11398.8 gi|154150482|ref|YP_001404100.1| - 0.0028 17.0 0.3 0.01 15.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) ABC_tran PF00005.27 gi|154150482|ref|YP_001404100.1| - 0.0074 16.8 7.2 0.02 15.4 0.1 4.1 3 2 1 4 4 4 1 ABC transporter Packaging_FI PF14000.6 gi|154150482|ref|YP_001404100.1| - 0.045 14.2 9.3 0.13 12.7 0.3 3.2 2 1 1 3 3 3 0 DNA packaging protein FI RsgA_GTPase PF03193.16 gi|154150482|ref|YP_001404100.1| - 0.092 12.6 0.1 0.56 10.1 0.0 2.5 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 gi|154150482|ref|YP_001404100.1| - 1.3 9.4 0.0 1.3 9.4 0.0 5.2 2 1 0 2 2 1 0 AAA ATPase domain Rad50_zn_hook PF04423.14 gi|154150482|ref|YP_001404100.1| - 2.8 7.8 5.8 1.2 9.0 0.2 3.5 3 0 0 3 3 3 0 Rad50 zinc hook motif Metallophos PF00149.28 gi|154150483|ref|YP_001404101.1| - 2.2e-13 51.2 0.0 4.8e-13 50.1 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|154150483|ref|YP_001404101.1| - 4e-11 43.4 0.0 9.6e-11 42.1 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain CbiK PF06180.11 gi|154150483|ref|YP_001404101.1| - 0.022 14.1 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) Hydrolase_6 PF13344.6 gi|154150483|ref|YP_001404101.1| - 0.15 12.2 0.0 0.44 10.7 0.0 1.8 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase PIN PF01850.21 gi|154150485|ref|YP_001404103.1| - 0.00051 20.5 0.1 0.00072 20.1 0.1 1.3 1 1 0 1 1 1 1 PIN domain NTP_transf_2 PF01909.23 gi|154150486|ref|YP_001404104.1| - 5e-14 52.4 0.1 5.5e-14 52.2 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|154150486|ref|YP_001404104.1| - 1e-10 41.6 0.0 1.3e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|154150486|ref|YP_001404104.1| - 0.11 12.3 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 dCMP_cyt_deam_1 PF00383.23 gi|154150488|ref|YP_001404106.1| - 3.8e-19 68.4 0.0 4.9e-19 68.1 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|154150488|ref|YP_001404106.1| - 4.2e-16 58.9 0.0 6.3e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 MafB19-like deaminase SNAD4 PF18750.1 gi|154150488|ref|YP_001404106.1| - 0.00014 21.9 0.0 0.00029 20.9 0.0 1.5 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 Bd3614-deam PF14439.6 gi|154150488|ref|YP_001404106.1| - 0.00023 21.2 0.7 0.069 13.2 0.1 2.2 1 1 1 2 2 2 2 Bd3614-like deaminase NAD1 PF18778.1 gi|154150488|ref|YP_001404106.1| - 0.0026 17.9 0.0 0.0078 16.3 0.0 1.7 2 0 0 2 2 2 1 Novel AID APOBEC clade 1 APOBEC2 PF18772.1 gi|154150488|ref|YP_001404106.1| - 0.011 15.8 0.0 0.021 14.9 0.0 1.4 2 0 0 2 2 2 0 APOBEC2 APOBEC_N PF08210.11 gi|154150488|ref|YP_001404106.1| - 0.029 14.3 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 APOBEC-like N-terminal domain NAD2 PF18782.1 gi|154150488|ref|YP_001404106.1| - 0.093 12.8 0.0 0.18 11.9 0.0 1.5 2 0 0 2 2 2 0 Novel AID APOBEC clade 2 Toxin-deaminase PF14424.6 gi|154150488|ref|YP_001404106.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 The BURPS668_1122 family of deaminases APOBEC3 PF18771.1 gi|154150488|ref|YP_001404106.1| - 0.15 12.2 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 APOBEC3 APOBEC4_like PF18774.1 gi|154150488|ref|YP_001404106.1| - 0.17 11.9 0.0 0.3 11.0 0.0 1.5 1 1 0 1 1 1 0 APOBEC4-like -AID/APOBEC-deaminase HxlR PF01638.17 gi|154150489|ref|YP_001404107.1| - 3.1e-35 119.9 0.1 3.9e-35 119.6 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.10 gi|154150489|ref|YP_001404107.1| - 0.0013 18.7 0.1 0.0022 17.9 0.1 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain PadR PF03551.14 gi|154150489|ref|YP_001404107.1| - 0.0084 16.1 0.1 0.014 15.3 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|154150489|ref|YP_001404107.1| - 0.01 15.8 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|154150489|ref|YP_001404107.1| - 0.015 15.4 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|154150489|ref|YP_001404107.1| - 0.043 13.8 0.1 0.064 13.2 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_CodY PF08222.11 gi|154150489|ref|YP_001404107.1| - 0.15 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain MFS_1 PF07690.16 gi|154150490|ref|YP_001404108.1| - 3.4e-45 154.5 49.8 3.4e-45 154.5 49.8 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|154150490|ref|YP_001404108.1| - 0.28 10.0 20.6 0.55 9.0 3.8 2.3 2 0 0 2 2 2 0 MFS_1 like family DUF3464 PF11947.8 gi|154150490|ref|YP_001404108.1| - 1.8 8.3 5.0 0.74 9.6 0.4 2.4 2 0 0 2 2 2 0 Photosynthesis affected mutant 68 FMN_red PF03358.15 gi|154150491|ref|YP_001404109.1| - 2.2e-27 95.7 0.0 2.6e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154150491|ref|YP_001404109.1| - 2.6e-07 30.6 0.0 4e-07 29.9 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold NADH-G_4Fe-4S_3 PF10588.9 gi|154150491|ref|YP_001404109.1| - 0.23 11.1 1.0 0.44 10.1 1.0 1.4 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Cupin_2 PF07883.11 gi|154150492|ref|YP_001404110.1| - 5.3e-12 45.3 2.1 8e-12 44.7 1.7 1.5 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.19 gi|154150492|ref|YP_001404110.1| - 6.6e-07 29.3 0.9 8.7e-07 28.9 0.9 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|154150492|ref|YP_001404110.1| - 0.00014 21.5 0.1 0.00019 21.0 0.1 1.2 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.7 gi|154150492|ref|YP_001404110.1| - 0.0072 16.2 0.1 0.0095 15.8 0.1 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_3 PF05899.12 gi|154150492|ref|YP_001404110.1| - 0.011 15.4 0.1 0.021 14.5 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF861) ARD PF03079.14 gi|154150492|ref|YP_001404110.1| - 0.015 15.5 0.1 0.022 14.9 0.1 1.2 1 0 0 1 1 1 0 ARD/ARD' family Cupin_6 PF12852.7 gi|154150492|ref|YP_001404110.1| - 0.045 13.5 0.1 0.068 12.9 0.1 1.3 1 0 0 1 1 1 0 Cupin Flavodoxin_4 PF12682.7 gi|154150493|ref|YP_001404111.1| - 5.2e-18 65.2 0.0 8.8e-18 64.5 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.17 gi|154150493|ref|YP_001404111.1| - 0.011 15.5 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin-like fold FMN_red PF03358.15 gi|154150493|ref|YP_001404111.1| - 0.023 14.4 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|154150493|ref|YP_001404111.1| - 0.024 14.3 0.0 2.6 7.7 0.0 2.1 1 1 1 2 2 2 0 Flavodoxin domain Aldo_ket_red PF00248.21 gi|154150494|ref|YP_001404112.1| - 1.4e-40 139.4 0.0 3.3e-39 134.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|154150494|ref|YP_001404112.1| - 4.1e-12 46.5 7.3 9.5e-12 45.3 7.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150494|ref|YP_001404112.1| - 2.1e-09 37.4 7.5 3.6e-09 36.7 7.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150494|ref|YP_001404112.1| - 3.1e-05 24.0 5.3 0.003 17.6 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154150494|ref|YP_001404112.1| - 5.4e-05 23.6 6.5 0.00012 22.5 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|154150494|ref|YP_001404112.1| - 0.0014 18.3 2.8 0.0014 18.3 2.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154150494|ref|YP_001404112.1| - 0.003 17.7 6.2 0.5 10.5 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|154150494|ref|YP_001404112.1| - 0.0059 16.4 3.7 0.01 15.6 0.1 2.2 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|154150494|ref|YP_001404112.1| - 0.0066 16.6 1.7 1.1 9.5 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154150494|ref|YP_001404112.1| - 0.0089 16.9 4.9 0.096 13.6 0.9 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|154150494|ref|YP_001404112.1| - 0.038 14.1 2.1 0.038 14.1 2.1 2.3 2 0 0 2 2 1 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|154150494|ref|YP_001404112.1| - 0.081 13.8 4.4 2.4 9.0 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150494|ref|YP_001404112.1| - 1.9 9.2 12.7 0.96 10.1 2.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154150494|ref|YP_001404112.1| - 3.7 8.2 15.4 44 4.8 15.6 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154150494|ref|YP_001404112.1| - 7.9 7.1 7.5 0.55 10.8 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I HTH_Crp_2 PF13545.6 gi|154150495|ref|YP_001404113.1| - 0.012 15.5 0.1 0.027 14.4 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|154150495|ref|YP_001404113.1| - 0.017 14.9 0.0 0.038 13.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 gi|154150495|ref|YP_001404113.1| - 0.079 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 MarR family NADH-G_4Fe-4S_3 PF10588.9 gi|154150495|ref|YP_001404113.1| - 0.086 12.4 1.2 0.29 10.7 1.2 1.9 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HTH_Tnp_4 PF13613.6 gi|154150495|ref|YP_001404113.1| - 0.09 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_11 PF08279.12 gi|154150495|ref|YP_001404113.1| - 0.12 12.4 0.1 0.34 10.9 0.0 1.9 2 1 0 2 2 2 0 HTH domain DUF1673 PF07895.11 gi|154150496|ref|YP_001404114.1| - 0.026 14.2 2.7 0.11 12.1 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1673) DUF2207 PF09972.9 gi|154150496|ref|YP_001404114.1| - 5.6 5.6 6.3 27 3.3 5.9 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF2244 PF10003.9 gi|154150496|ref|YP_001404114.1| - 6.3 6.5 6.2 31 4.2 3.1 2.1 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) FMN_red PF03358.15 gi|154150497|ref|YP_001404115.1| - 2.2e-23 82.7 0.0 2.1e-22 79.5 0.0 2.0 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154150497|ref|YP_001404115.1| - 2.6e-15 56.7 0.0 3e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|154150497|ref|YP_001404115.1| - 0.0012 19.1 0.0 0.002 18.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Radical_SAM PF04055.21 gi|154150498|ref|YP_001404116.1| - 1.9e-23 83.7 0.0 2.9e-23 83.1 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|154150498|ref|YP_001404116.1| - 2.5e-11 44.0 0.0 4.4e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|154150498|ref|YP_001404116.1| - 8.3e-09 35.6 0.0 1.7e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|154150498|ref|YP_001404116.1| - 1.5e-07 31.8 0.1 4.2e-07 30.4 0.1 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Hydrolase PF00702.26 gi|154150498|ref|YP_001404116.1| - 0.018 15.3 0.0 5.9 7.1 0.0 2.3 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Complex1_49kDa PF00346.19 gi|154150498|ref|YP_001404116.1| - 0.22 10.6 0.0 0.38 9.8 0.0 1.3 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AsnC_trans_reg2 PF17805.1 gi|154150499|ref|YP_001404117.1| - 9.7e-28 96.2 0.0 2.7e-27 94.7 0.0 1.6 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|154150499|ref|YP_001404117.1| - 2.4e-12 46.5 0.1 2.2e-11 43.4 0.0 2.5 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|154150499|ref|YP_001404117.1| - 8.2e-06 25.3 0.2 0.0033 16.9 0.0 2.9 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|154150499|ref|YP_001404117.1| - 0.00093 19.0 0.1 0.0016 18.3 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|154150499|ref|YP_001404117.1| - 0.06 13.3 0.0 0.19 11.8 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF3562 PF12085.8 gi|154150499|ref|YP_001404117.1| - 0.25 11.0 1.9 0.51 10.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) AsnC_trans_reg2 PF17805.1 gi|154150500|ref|YP_001404118.1| - 1e-19 70.5 0.0 1.4e-19 70.1 0.0 1.2 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|154150500|ref|YP_001404118.1| - 1.7e-06 27.7 0.6 3.4e-06 26.8 0.1 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|154150500|ref|YP_001404118.1| - 0.0023 17.5 3.3 0.11 12.1 0.0 2.6 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding Radical_SAM PF04055.21 gi|154150501|ref|YP_001404119.1| - 2.8e-22 79.9 0.0 5e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|154150501|ref|YP_001404119.1| - 1e-07 32.4 1.9 1.9e-07 31.5 1.9 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|154150501|ref|YP_001404119.1| - 5.8e-06 26.6 0.0 1.1e-05 25.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|154150501|ref|YP_001404119.1| - 0.00011 22.3 0.0 0.00023 21.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain peroxidase PF00141.23 gi|154150502|ref|YP_001404120.1| - 1.4e-90 303.0 0.0 1.3e-47 162.4 0.0 2.3 2 0 0 2 2 2 2 Peroxidase GST_C_3 PF14497.6 gi|154150502|ref|YP_001404120.1| - 0.14 12.3 0.0 12 6.2 0.0 2.5 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain Pur_ac_phosph_N PF16656.5 gi|154150503|ref|YP_001404121.1| - 0.0022 18.6 2.1 0.0022 18.6 2.1 3.0 1 1 1 2 2 2 1 Purple acid Phosphatase, N-terminal domain fn3_5 PF06280.12 gi|154150504|ref|YP_001404122.1| - 0.018 15.8 0.4 2.9 8.6 0.0 2.8 2 1 1 3 3 3 0 Fn3-like domain Calici_coat_C PF08435.11 gi|154150504|ref|YP_001404122.1| - 0.048 13.2 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 Calicivirus coat protein C-terminal Y_Y_Y PF07495.13 gi|154150504|ref|YP_001404122.1| - 0.055 13.4 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Y_Y_Y domain TcfC PF16967.5 gi|154150504|ref|YP_001404122.1| - 0.1 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 E-set like domain Peptidase_M64 PF09471.10 gi|154150507|ref|YP_001404125.1| - 0.048 13.2 0.0 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 IgA Peptidase M64 Response_reg PF00072.24 gi|154150508|ref|YP_001404126.1| - 3.3e-21 75.5 0.0 6.6e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain MetOD2 PF18548.1 gi|154150508|ref|YP_001404126.1| - 1.1e-13 51.1 0.5 1.8e-13 50.4 0.5 1.3 1 0 0 1 1 1 1 Metanogen output domain 2 DUF2769 PF10967.8 gi|154150509|ref|YP_001404127.1| - 1e-10 42.1 14.1 1.3e-10 41.8 14.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) Trehalase_Ca-bi PF07492.11 gi|154150509|ref|YP_001404127.1| - 0.13 12.0 0.1 0.22 11.3 0.1 1.3 1 0 0 1 1 1 0 Neutral trehalase Ca2+ binding domain AglB_L1 PF18079.1 gi|154150510|ref|YP_001404128.1| - 3.9e-14 52.7 0.9 5e-14 52.3 0.9 1.2 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain HTH_20 PF12840.7 gi|154150511|ref|YP_001404129.1| - 0.0036 17.3 0.0 0.0054 16.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|154150511|ref|YP_001404129.1| - 0.016 15.0 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_39 PF14090.6 gi|154150511|ref|YP_001404129.1| - 0.019 14.7 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.12 gi|154150511|ref|YP_001404129.1| - 0.035 14.5 0.0 0.051 14.0 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein FeoC PF09012.10 gi|154150511|ref|YP_001404129.1| - 0.042 13.9 1.7 0.21 11.7 1.8 2.0 1 1 1 2 2 2 0 FeoC like transcriptional regulator HTH_28 PF13518.6 gi|154150511|ref|YP_001404129.1| - 0.07 13.3 0.0 0.09 12.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.6 gi|154150511|ref|YP_001404129.1| - 0.11 12.5 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|154150511|ref|YP_001404129.1| - 0.11 12.8 0.0 0.16 12.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.7 gi|154150511|ref|YP_001404129.1| - 0.11 12.3 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 MarR family HxlR PF01638.17 gi|154150511|ref|YP_001404129.1| - 0.15 11.9 0.0 0.58 10.0 0.0 1.7 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DUF2407_C PF13373.6 gi|154150512|ref|YP_001404130.1| - 1.9 8.6 4.3 1.2 9.3 0.4 2.1 2 0 0 2 2 2 0 DUF2407 C-terminal domain FeoB_N PF02421.18 gi|154150513|ref|YP_001404131.1| - 4.4e-66 221.2 0.1 6.7e-66 220.6 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|154150513|ref|YP_001404131.1| - 5.4e-41 139.4 23.3 1.2e-27 96.4 5.3 3.0 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.12 gi|154150513|ref|YP_001404131.1| - 1.8e-20 72.4 2.8 1.8e-20 72.4 2.8 2.9 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 gi|154150513|ref|YP_001404131.1| - 1e-19 70.7 0.0 2e-19 69.8 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|154150513|ref|YP_001404131.1| - 5.9e-15 55.6 0.0 1.1e-14 54.7 0.0 1.5 1 0 0 1 1 1 1 FeoB cytosolic helical domain SRPRB PF09439.10 gi|154150513|ref|YP_001404131.1| - 8.8e-05 22.0 0.0 0.00014 21.3 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|154150513|ref|YP_001404131.1| - 0.0013 18.1 0.0 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|154150513|ref|YP_001404131.1| - 0.011 15.7 0.1 4.7 7.2 0.0 2.2 2 0 0 2 2 2 0 Dynamin family Arf PF00025.21 gi|154150513|ref|YP_001404131.1| - 0.099 12.1 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family FeoA PF04023.14 gi|154150514|ref|YP_001404132.1| - 1.9e-18 66.5 0.1 2.1e-18 66.3 0.1 1.0 1 0 0 1 1 1 1 FeoA domain Abhydrolase_8 PF06259.12 gi|154150514|ref|YP_001404132.1| - 0.063 12.9 0.0 0.07 12.8 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase FeoA PF04023.14 gi|154150515|ref|YP_001404133.1| - 2.8e-14 53.1 0.0 3.2e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 FeoA domain Fe_dep_repress PF01325.19 gi|154150516|ref|YP_001404134.1| - 2.3e-20 72.5 0.2 3.4e-20 72.0 0.2 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|154150516|ref|YP_001404134.1| - 2e-16 59.8 0.4 5.3e-16 58.5 0.1 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Rrf2 PF02082.20 gi|154150516|ref|YP_001404134.1| - 3.4e-05 24.1 0.0 5.7e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator TFIIE_alpha PF02002.17 gi|154150516|ref|YP_001404134.1| - 3.4e-05 23.6 0.1 0.00016 21.5 0.1 1.9 1 1 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|154150516|ref|YP_001404134.1| - 3.5e-05 23.6 0.0 8.3e-05 22.4 0.0 1.6 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|154150516|ref|YP_001404134.1| - 4.1e-05 23.4 0.1 7.8e-05 22.5 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|154150516|ref|YP_001404134.1| - 0.00022 21.1 0.0 0.0004 20.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_6 PF01418.17 gi|154150516|ref|YP_001404134.1| - 0.00054 19.9 0.0 0.2 11.7 0.0 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain, rpiR family HTH_Crp_2 PF13545.6 gi|154150516|ref|YP_001404134.1| - 0.0016 18.3 0.0 0.0035 17.3 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|154150516|ref|YP_001404134.1| - 0.0051 16.9 0.1 0.0076 16.3 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.6 gi|154150516|ref|YP_001404134.1| - 0.0055 16.7 0.1 0.0095 15.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.17 gi|154150516|ref|YP_001404134.1| - 0.01 15.7 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|154150516|ref|YP_001404134.1| - 0.011 15.3 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|154150516|ref|YP_001404134.1| - 0.012 15.4 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF505 PF04458.12 gi|154150516|ref|YP_001404134.1| - 0.034 12.5 0.1 0.034 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HrcA_DNA-bdg PF03444.15 gi|154150516|ref|YP_001404134.1| - 0.072 12.7 0.0 2.2 8.0 0.0 2.1 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_micro PF17007.5 gi|154150516|ref|YP_001404134.1| - 0.12 11.2 0.1 0.14 10.9 0.1 1.1 1 0 0 1 1 1 0 HTH-like HTH_27 PF13463.6 gi|154150516|ref|YP_001404134.1| - 0.14 12.7 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|154150516|ref|YP_001404134.1| - 0.16 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|154150516|ref|YP_001404134.1| - 0.16 11.9 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain NicO PF03824.16 gi|154150518|ref|YP_001404136.1| - 2.3e-75 253.6 14.2 2.3e-75 253.6 14.2 1.4 2 0 0 2 2 2 1 High-affinity nickel-transport protein Phage_holin_3_6 PF07332.11 gi|154150518|ref|YP_001404136.1| - 0.0079 16.2 0.9 0.0079 16.2 0.9 3.8 2 2 2 4 4 4 1 Putative Actinobacterial Holin-X, holin superfamily III MHYT PF03707.16 gi|154150518|ref|YP_001404136.1| - 0.016 15.3 0.0 0.016 15.3 0.0 4.1 5 0 0 5 5 5 0 Bacterial signalling protein N terminal repeat LRR_11 PF18831.1 gi|154150518|ref|YP_001404136.1| - 0.15 11.6 1.5 0.7 9.5 0.1 2.6 2 0 0 2 2 2 0 Leucine-rich repeat Herpes_pp38 PF04846.13 gi|154150518|ref|YP_001404136.1| - 5.5 7.0 7.9 0.39 10.7 1.1 2.7 2 2 1 3 3 3 0 Herpesvirus pp38 phosphoprotein HTH_24 PF13412.6 gi|154150519|ref|YP_001404137.1| - 7.4e-10 38.2 0.0 3.6e-09 36.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|154150519|ref|YP_001404137.1| - 1.5e-08 34.4 0.0 3.1e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|154150519|ref|YP_001404137.1| - 5.4e-07 29.4 0.0 1.5e-06 28.0 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|154150519|ref|YP_001404137.1| - 1e-05 25.4 0.0 2.7e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|154150519|ref|YP_001404137.1| - 0.00011 22.1 0.0 0.00027 20.8 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|154150519|ref|YP_001404137.1| - 0.00035 20.3 0.0 0.00056 19.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|154150519|ref|YP_001404137.1| - 0.0009 19.1 0.0 0.0017 18.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_3 PF01381.22 gi|154150519|ref|YP_001404137.1| - 0.0012 18.8 0.0 0.0043 17.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_45 PF14947.6 gi|154150519|ref|YP_001404137.1| - 0.002 18.1 0.0 0.0035 17.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|154150519|ref|YP_001404137.1| - 0.003 17.4 0.0 0.02 14.8 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|154150519|ref|YP_001404137.1| - 0.0056 16.8 0.1 0.016 15.4 0.0 1.8 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain Mnd1 PF03962.15 gi|154150519|ref|YP_001404137.1| - 0.0076 16.5 0.0 0.015 15.6 0.0 1.5 1 0 0 1 1 1 1 Mnd1 HTH domain Rrf2 PF02082.20 gi|154150519|ref|YP_001404137.1| - 0.022 15.1 0.0 0.04 14.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|154150519|ref|YP_001404137.1| - 0.067 13.0 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.12 gi|154150519|ref|YP_001404137.1| - 0.096 12.5 0.1 0.33 10.8 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain AbiEi_4 PF13338.6 gi|154150519|ref|YP_001404137.1| - 0.11 12.7 0.0 0.24 11.6 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin GntR PF00392.21 gi|154150519|ref|YP_001404137.1| - 0.13 11.9 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sigma70_r3 PF04539.16 gi|154150519|ref|YP_001404137.1| - 0.16 12.1 0.1 0.32 11.1 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HxlR PF01638.17 gi|154150520|ref|YP_001404138.1| - 1.6e-17 63.2 0.0 1.9e-17 62.9 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|154150520|ref|YP_001404138.1| - 0.0015 18.4 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|154150520|ref|YP_001404138.1| - 0.0023 18.1 0.0 0.0031 17.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|154150520|ref|YP_001404138.1| - 0.0059 16.5 0.0 0.0078 16.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|154150520|ref|YP_001404138.1| - 0.042 13.9 0.0 0.1 12.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Cation_efflux PF01545.21 gi|154150521|ref|YP_001404139.1| - 7.6e-41 140.0 22.6 9.1e-41 139.8 22.6 1.1 1 0 0 1 1 1 1 Cation efflux family NrsF PF06532.11 gi|154150521|ref|YP_001404139.1| - 2.1 8.0 16.6 4.8 6.8 6.4 2.3 1 1 1 2 2 2 0 Negative regulator of sigma F Pilin_N PF07790.11 gi|154150523|ref|YP_001404141.1| - 4.1e-26 91.7 3.1 8.2e-26 90.7 3.1 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|154150524|ref|YP_001404142.1| - 6.4e-26 91.1 1.4 1.5e-25 89.9 1.4 1.7 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF1345 PF07077.11 gi|154150524|ref|YP_001404142.1| - 0.014 15.1 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1345) MatB PF16449.5 gi|154150524|ref|YP_001404142.1| - 0.02 14.7 0.3 0.033 14.0 0.3 1.4 1 0 0 1 1 1 0 Fimbrillin MatB DUF4352 PF11611.8 gi|154150524|ref|YP_001404142.1| - 0.026 14.8 0.0 0.11 12.7 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4352) LTD PF00932.19 gi|154150524|ref|YP_001404142.1| - 0.27 11.6 4.3 0.51 10.7 3.6 1.8 1 1 1 2 2 2 0 Lamin Tail Domain Peripla_BP_2 PF01497.18 gi|154150526|ref|YP_001404144.1| - 7.7e-41 140.2 1.3 9.2e-41 140.0 0.3 1.6 2 0 0 2 2 2 1 Periplasmic binding protein VAPB_antitox PF02697.14 gi|154150527|ref|YP_001404145.1| - 1.2e-15 58.0 1.1 1.5e-15 57.7 1.1 1.0 1 0 0 1 1 1 1 Putative antitoxin RHH_1 PF01402.21 gi|154150527|ref|YP_001404145.1| - 0.07 13.1 0.2 0.16 11.9 0.1 1.7 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family FAD_SOX PF18371.1 gi|154150527|ref|YP_001404145.1| - 0.11 12.8 0.0 0.12 12.7 0.0 1.2 1 0 0 1 1 1 0 Flavin adenine dinucleotide (FAD)-dependent sulfhydryl oxidase PIN PF01850.21 gi|154150528|ref|YP_001404146.1| - 2.4e-13 50.6 0.0 2.8e-13 50.4 0.0 1.0 1 0 0 1 1 1 1 PIN domain FecCD PF01032.18 gi|154150529|ref|YP_001404147.1| - 9e-91 304.1 36.5 1.1e-90 303.8 36.5 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|154150529|ref|YP_001404147.1| - 8e-06 25.5 20.4 1.3e-05 24.8 20.4 1.4 1 0 0 1 1 1 1 ABC 3 transport family DUF3980 PF13140.6 gi|154150529|ref|YP_001404147.1| - 6.3 7.3 8.3 0.78 10.2 0.2 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF3980) ABC_tran PF00005.27 gi|154150530|ref|YP_001404148.1| - 6.4e-28 98.0 0.0 8.9e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|154150530|ref|YP_001404148.1| - 1.2e-07 31.5 0.1 0.0015 18.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|154150530|ref|YP_001404148.1| - 4.1e-07 30.1 2.5 5.7e-06 26.4 0.2 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_19 PF13245.6 gi|154150530|ref|YP_001404148.1| - 8.3e-05 23.0 0.1 0.00021 21.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|154150530|ref|YP_001404148.1| - 0.0001 22.6 1.1 0.002 18.4 1.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|154150530|ref|YP_001404148.1| - 0.00011 21.8 0.2 0.00023 20.8 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|154150530|ref|YP_001404148.1| - 0.00024 20.9 0.1 0.00057 19.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|154150530|ref|YP_001404148.1| - 0.00053 20.5 0.1 0.001 19.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|154150530|ref|YP_001404148.1| - 0.00069 20.0 0.3 0.0024 18.3 0.4 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_15 PF13175.6 gi|154150530|ref|YP_001404148.1| - 0.0019 18.0 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|154150530|ref|YP_001404148.1| - 0.002 18.1 0.1 0.011 15.7 0.0 1.9 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|154150530|ref|YP_001404148.1| - 0.003 17.6 0.0 0.027 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|154150530|ref|YP_001404148.1| - 0.01 15.6 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|154150530|ref|YP_001404148.1| - 0.011 15.0 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase NACHT PF05729.12 gi|154150530|ref|YP_001404148.1| - 0.013 15.5 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|154150530|ref|YP_001404148.1| - 0.014 14.8 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|154150530|ref|YP_001404148.1| - 0.015 15.5 0.0 0.022 14.9 0.0 1.3 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|154150530|ref|YP_001404148.1| - 0.017 14.2 0.1 0.029 13.4 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|154150530|ref|YP_001404148.1| - 0.018 14.2 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATP_bind_1 PF03029.17 gi|154150530|ref|YP_001404148.1| - 0.024 14.4 0.0 0.067 13.0 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 gi|154150530|ref|YP_001404148.1| - 0.027 14.5 0.0 0.093 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|154150530|ref|YP_001404148.1| - 0.029 14.3 0.1 0.063 13.2 0.0 1.7 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 gi|154150530|ref|YP_001404148.1| - 0.031 14.8 0.0 0.053 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|154150530|ref|YP_001404148.1| - 0.031 14.2 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA PF00004.29 gi|154150530|ref|YP_001404148.1| - 0.037 14.5 0.1 0.35 11.3 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|154150530|ref|YP_001404148.1| - 0.048 13.3 0.5 0.099 12.2 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|154150530|ref|YP_001404148.1| - 0.059 12.3 0.1 0.097 11.6 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP-synt_ab PF00006.25 gi|154150530|ref|YP_001404148.1| - 0.064 12.9 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_27 PF13514.6 gi|154150530|ref|YP_001404148.1| - 0.069 12.7 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|154150530|ref|YP_001404148.1| - 0.074 12.4 0.2 2.6 7.4 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein RecA PF00154.21 gi|154150530|ref|YP_001404148.1| - 0.082 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein Zeta_toxin PF06414.12 gi|154150530|ref|YP_001404148.1| - 0.17 11.2 0.0 0.52 9.5 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin RNA12 PF10443.9 gi|154150530|ref|YP_001404148.1| - 0.19 10.5 0.0 0.28 9.9 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_28 PF13521.6 gi|154150530|ref|YP_001404148.1| - 0.2 11.9 0.4 0.41 10.9 0.1 1.6 2 0 0 2 2 1 0 AAA domain AP_endonuc_2 PF01261.24 gi|154150531|ref|YP_001404149.1| - 6.4e-11 42.1 0.7 9.2e-11 41.6 0.7 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF2769 PF10967.8 gi|154150533|ref|YP_001404151.1| - 3.3e-13 50.1 11.6 4e-13 49.8 11.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) GATase PF00117.28 gi|154150534|ref|YP_001404152.1| - 8.5e-19 68.1 0.0 1.1e-18 67.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|154150534|ref|YP_001404152.1| - 2.3e-11 43.9 0.4 1.4e-09 38.0 0.4 2.1 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 gi|154150534|ref|YP_001404152.1| - 0.0025 17.4 0.1 0.0041 16.8 0.1 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.6 gi|154150534|ref|YP_001404152.1| - 0.16 11.0 0.5 6.5 5.8 0.4 2.3 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain Diphthami_syn_2 PF01902.17 gi|154150535|ref|YP_001404153.1| - 3.5e-65 219.6 0.0 4e-65 219.4 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase FTR_C PF02741.15 gi|154150536|ref|YP_001404154.1| - 3.3e-55 186.2 0.2 5.7e-55 185.4 0.2 1.4 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.18 gi|154150536|ref|YP_001404154.1| - 9.1e-53 178.0 0.0 1.6e-52 177.2 0.0 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase 5-FTHF_cyc-lig PF01812.20 gi|154150537|ref|YP_001404155.1| - 2.1e-35 122.2 0.0 2.4e-35 122.1 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Methyltransf_25 PF13649.6 gi|154150538|ref|YP_001404156.1| - 2.7e-19 69.7 0.0 8.2e-19 68.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154150538|ref|YP_001404156.1| - 1e-17 64.5 0.0 2e-17 63.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154150538|ref|YP_001404156.1| - 4.4e-15 55.9 0.0 7e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154150538|ref|YP_001404156.1| - 1.2e-14 54.8 0.0 2.6e-14 53.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154150538|ref|YP_001404156.1| - 2.9e-13 49.9 0.0 3.6e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|154150538|ref|YP_001404156.1| - 9.7e-09 34.9 0.0 5.4e-08 32.5 0.0 1.8 1 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|154150538|ref|YP_001404156.1| - 1.3e-07 31.3 0.0 1.6e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|154150538|ref|YP_001404156.1| - 6.8e-07 29.0 0.0 9.6e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|154150538|ref|YP_001404156.1| - 0.00011 21.7 0.0 0.00015 21.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|154150538|ref|YP_001404156.1| - 0.00067 18.8 0.0 0.00095 18.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|154150538|ref|YP_001404156.1| - 0.0015 18.2 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|154150538|ref|YP_001404156.1| - 0.0018 18.3 0.0 0.0027 17.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|154150538|ref|YP_001404156.1| - 0.0029 16.2 0.0 0.021 13.4 0.0 1.9 2 0 0 2 2 2 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.15 gi|154150538|ref|YP_001404156.1| - 0.0051 16.7 0.0 0.016 15.0 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase DREV PF05219.12 gi|154150538|ref|YP_001404156.1| - 0.028 13.5 0.0 0.042 12.9 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_18 PF12847.7 gi|154150538|ref|YP_001404156.1| - 0.034 14.1 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|154150538|ref|YP_001404156.1| - 0.047 13.4 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Acetyltransf_4 PF13420.7 gi|154150539|ref|YP_001404157.1| - 3.4e-10 40.3 0.0 4e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|154150539|ref|YP_001404157.1| - 6.5e-10 39.3 0.1 1.1e-09 38.6 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|154150539|ref|YP_001404157.1| - 2.6e-07 31.4 0.0 3.7e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|154150539|ref|YP_001404157.1| - 1.5e-05 25.4 0.0 3.4e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|154150539|ref|YP_001404157.1| - 0.0013 18.7 0.0 0.0024 17.8 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|154150539|ref|YP_001404157.1| - 0.014 15.4 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein ABM PF03992.16 gi|154150540|ref|YP_001404158.1| - 2.1e-16 59.8 0.0 2.9e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase MFS_1 PF07690.16 gi|154150541|ref|YP_001404159.1| - 3.2e-37 128.3 79.7 9.3e-35 120.2 50.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PAS_4 PF08448.10 gi|154150542|ref|YP_001404160.1| - 4.4e-16 59.1 0.0 7.7e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|154150542|ref|YP_001404160.1| - 4e-14 52.7 0.0 8.9e-14 51.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|154150542|ref|YP_001404160.1| - 1.9e-12 47.2 0.0 3.9e-12 46.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|154150542|ref|YP_001404160.1| - 1.4e-07 32.0 0.1 5e-07 30.2 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|154150542|ref|YP_001404160.1| - 0.00069 19.6 0.0 0.002 18.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|154150542|ref|YP_001404160.1| - 0.0081 16.3 0.0 0.031 14.4 0.0 2.1 1 1 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|154150542|ref|YP_001404160.1| - 0.056 13.7 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 PAS fold Sarcolipin PF05366.11 gi|154150542|ref|YP_001404160.1| - 0.076 12.7 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Sarcolipin TPR_1 PF00515.28 gi|154150543|ref|YP_001404161.1| - 6.9e-37 123.8 17.6 4e-07 29.6 0.0 7.9 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154150543|ref|YP_001404161.1| - 4e-36 120.2 17.7 3.2e-07 29.9 1.1 8.1 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154150543|ref|YP_001404161.1| - 3.4e-29 99.0 16.5 8.2e-06 26.2 1.0 8.3 2 2 6 8 8 8 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154150543|ref|YP_001404161.1| - 2.5e-25 86.5 8.0 0.00018 21.5 0.1 7.9 8 0 0 8 8 8 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154150543|ref|YP_001404161.1| - 1.6e-23 82.9 8.8 1.4e-05 25.5 0.6 4.9 4 1 1 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154150543|ref|YP_001404161.1| - 2.6e-22 79.2 19.6 2.9e-06 27.8 3.9 5.8 2 2 3 6 6 6 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154150543|ref|YP_001404161.1| - 5.2e-22 77.3 14.5 0.00028 20.5 0.3 8.1 4 3 4 8 8 8 6 TPR repeat TPR_9 PF13371.6 gi|154150543|ref|YP_001404161.1| - 1e-16 60.9 16.8 0.00014 21.9 0.6 5.3 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|154150543|ref|YP_001404161.1| - 2.8e-16 58.7 5.9 0.0009 19.5 0.0 8.2 9 0 0 9 9 8 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154150543|ref|YP_001404161.1| - 6.7e-16 58.3 16.5 1.5e-06 28.4 1.1 6.3 3 2 4 7 7 7 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154150543|ref|YP_001404161.1| - 2.7e-15 55.2 10.7 0.012 15.5 0.4 6.8 4 2 2 6 6 6 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|154150543|ref|YP_001404161.1| - 5.1e-14 52.3 8.6 2.4e-06 27.7 0.3 4.0 2 2 3 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|154150543|ref|YP_001404161.1| - 2.9e-10 39.7 11.5 0.4 10.6 0.0 6.7 7 0 0 7 7 7 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|154150543|ref|YP_001404161.1| - 5.5e-10 39.2 3.1 0.17 12.0 0.0 5.8 4 1 2 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat TPR_6 PF13174.6 gi|154150543|ref|YP_001404161.1| - 1.7e-05 25.1 7.9 30 5.6 0.0 6.8 7 0 0 7 7 7 0 Tetratricopeptide repeat NARP1 PF12569.8 gi|154150543|ref|YP_001404161.1| - 0.00014 20.9 0.8 0.59 9.0 0.2 3.4 2 2 3 5 5 5 3 NMDA receptor-regulated protein 1 HrpB1_HrpK PF09613.10 gi|154150543|ref|YP_001404161.1| - 0.0012 18.4 0.4 0.013 15.1 0.0 2.7 3 1 1 4 4 4 1 Bacterial type III secretion protein (HrpB1_HrpK) TPR_3 PF07720.12 gi|154150543|ref|YP_001404161.1| - 0.0032 17.4 10.3 1.6 8.8 0.4 4.6 5 0 0 5 5 4 1 Tetratricopeptide repeat BTAD PF03704.17 gi|154150543|ref|YP_001404161.1| - 0.0042 17.5 3.1 0.74 10.2 0.0 3.5 4 0 0 4 4 3 1 Bacterial transcriptional activator domain PPR PF01535.20 gi|154150543|ref|YP_001404161.1| - 0.0054 16.9 2.8 16 6.0 0.0 5.2 6 0 0 6 6 5 0 PPR repeat TPR_21 PF09976.9 gi|154150543|ref|YP_001404161.1| - 0.006 16.3 4.8 1.2 8.8 0.2 3.5 2 2 2 4 4 4 1 Tetratricopeptide repeat-like domain SRP_TPR_like PF17004.5 gi|154150543|ref|YP_001404161.1| - 0.011 15.8 0.1 0.078 13.0 0.0 2.4 3 0 0 3 3 2 0 Putative TPR-like repeat Alkyl_sulf_dimr PF14863.6 gi|154150543|ref|YP_001404161.1| - 0.014 15.8 0.2 0.066 13.7 0.0 2.0 2 0 0 2 2 2 0 Alkyl sulfatase dimerisation DUF3856 PF12968.7 gi|154150543|ref|YP_001404161.1| - 0.05 13.7 5.1 59 3.7 1.0 4.8 2 2 1 3 3 3 0 Domain of Unknown Function (DUF3856) TPR_15 PF13429.6 gi|154150543|ref|YP_001404161.1| - 0.051 12.8 1.2 6.5 5.9 0.1 3.6 2 2 1 4 4 4 0 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|154150543|ref|YP_001404161.1| - 0.057 12.2 0.1 2.1 7.0 0.0 2.6 3 0 0 3 3 3 0 Protein kinase G tetratricopeptide repeat SHNi-TPR PF10516.9 gi|154150543|ref|YP_001404161.1| - 0.059 12.8 0.0 40 3.8 0.0 3.7 4 0 0 4 4 4 0 SHNi-TPR Coatomer_E PF04733.14 gi|154150543|ref|YP_001404161.1| - 0.066 12.6 0.1 15 4.9 0.0 2.6 3 0 0 3 3 3 0 Coatomer epsilon subunit CxxCxxCC PF03692.15 gi|154150545|ref|YP_001404163.1| - 0.00027 21.5 6.4 0.0031 18.2 6.4 2.2 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain MethyltransfD12 PF02086.15 gi|154150546|ref|YP_001404164.1| - 4.6e-58 196.9 0.0 5.2e-58 196.8 0.0 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Neur_chan_LBD PF02931.23 gi|154150548|ref|YP_001404166.1| - 0.098 12.1 0.0 0.34 10.3 0.0 1.8 2 0 0 2 2 2 0 Neurotransmitter-gated ion-channel ligand binding domain DUF1624 PF07786.12 gi|154150549|ref|YP_001404167.1| - 3.4e-20 72.6 17.2 5.4e-18 65.4 11.1 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.22 gi|154150549|ref|YP_001404167.1| - 1.1e-06 28.0 40.0 8.7e-05 21.7 40.0 2.1 1 1 0 1 1 1 1 Acyltransferase family Response_reg PF00072.24 gi|154150550|ref|YP_001404168.1| - 8.6e-21 74.2 0.0 1.5e-20 73.4 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.26 gi|154150550|ref|YP_001404168.1| - 6.9e-07 30.0 0.0 1.5e-06 28.9 0.0 1.7 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 gi|154150550|ref|YP_001404168.1| - 1.1e-05 25.8 0.0 2.1e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|154150550|ref|YP_001404168.1| - 0.014 15.7 0.0 0.044 14.1 0.0 1.8 2 0 0 2 2 2 0 GAF domain HisKA_2 PF07568.12 gi|154150551|ref|YP_001404169.1| - 4.2e-29 100.5 0.1 8.7e-29 99.4 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 gi|154150551|ref|YP_001404169.1| - 8.1e-11 42.4 0.0 8.2e-09 36.0 0.0 3.0 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|154150551|ref|YP_001404169.1| - 1.4e-06 28.9 1.3 3.1e-05 24.6 0.0 2.3 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|154150551|ref|YP_001404169.1| - 3.5e-05 23.8 0.0 7.2e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|154150551|ref|YP_001404169.1| - 0.039 13.8 0.0 0.099 12.5 0.0 1.6 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2759 PF10958.8 gi|154150551|ref|YP_001404169.1| - 0.27 11.0 4.3 0.61 9.9 1.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2759) AA_permease_2 PF13520.6 gi|154150552|ref|YP_001404170.1| - 1.7e-53 182.0 54.7 2.1e-53 181.7 54.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|154150552|ref|YP_001404170.1| - 9.9e-38 129.9 48.6 9.9e-38 129.9 48.6 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|154150552|ref|YP_001404170.1| - 1e-13 51.1 4.4 1e-13 51.1 4.4 4.0 3 0 0 3 3 3 1 C-terminus of AA_permease Cytochrom_B_C PF00032.17 gi|154150552|ref|YP_001404170.1| - 7.9 6.8 9.4 0.47 10.8 1.2 2.9 2 1 0 2 2 2 0 Cytochrome b(C-terminal)/b6/petD DUF3493 PF11998.8 gi|154150553|ref|YP_001404171.1| - 0.078 13.2 1.3 11 6.3 0.0 2.6 2 0 0 2 2 2 0 Low psii accumulation1 / Rep27 PrsW-protease PF13367.6 gi|154150554|ref|YP_001404172.1| - 1e-15 57.7 13.2 2.4e-15 56.5 13.2 1.6 1 1 0 1 1 1 1 PrsW family intramembrane metalloprotease LHC PF00556.20 gi|154150554|ref|YP_001404172.1| - 6.2 7.1 8.7 0.57 10.4 1.9 3.0 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit HTH_20 PF12840.7 gi|154150555|ref|YP_001404173.1| - 6.7e-10 38.9 0.0 1e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|154150555|ref|YP_001404173.1| - 6.4e-06 25.6 0.0 1e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|154150555|ref|YP_001404173.1| - 1.5e-05 24.8 0.0 3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|154150555|ref|YP_001404173.1| - 0.00055 19.8 0.0 0.00089 19.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|154150555|ref|YP_001404173.1| - 0.00068 19.5 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|154150555|ref|YP_001404173.1| - 0.0019 18.0 0.1 0.0054 16.6 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|154150555|ref|YP_001404173.1| - 0.0019 18.5 0.0 0.0035 17.7 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein Rrf2 PF02082.20 gi|154150555|ref|YP_001404173.1| - 0.0048 17.2 0.0 0.0093 16.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|154150555|ref|YP_001404173.1| - 0.0054 16.5 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_IclR PF09339.10 gi|154150555|ref|YP_001404173.1| - 0.0066 16.2 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|154150555|ref|YP_001404173.1| - 0.0088 16.0 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain Calici_MSP PF05752.11 gi|154150555|ref|YP_001404173.1| - 0.018 14.9 0.1 0.024 14.4 0.1 1.2 1 0 0 1 1 1 0 Calicivirus minor structural protein TFIIE_alpha PF02002.17 gi|154150555|ref|YP_001404173.1| - 0.024 14.5 0.1 0.034 14.0 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_47 PF16221.5 gi|154150555|ref|YP_001404173.1| - 0.068 12.7 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 winged helix-turn-helix DUF2513 PF10711.9 gi|154150555|ref|YP_001404173.1| - 0.078 13.3 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_27 PF13463.6 gi|154150555|ref|YP_001404173.1| - 0.11 13.0 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|154150555|ref|YP_001404173.1| - 0.12 12.3 0.2 0.19 11.8 0.2 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Chlor_dismutase PF06778.12 gi|154150555|ref|YP_001404173.1| - 0.16 11.5 0.0 0.21 11.2 0.0 1.1 1 0 0 1 1 1 0 Chlorite dismutase Rhomboid PF01694.22 gi|154150556|ref|YP_001404174.1| - 0.00061 19.8 17.9 0.00061 19.8 17.9 2.7 2 1 1 3 3 3 2 Rhomboid family Bax1-I PF01027.20 gi|154150556|ref|YP_001404174.1| - 2.1 8.1 38.2 0.042 13.7 26.8 2.5 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 Isochorismatase PF00857.20 gi|154150557|ref|YP_001404175.1| - 4.2e-41 141.0 0.0 4.8e-41 140.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family MFS_1 PF07690.16 gi|154150558|ref|YP_001404176.1| - 4.1e-45 154.2 68.0 2e-42 145.4 65.1 3.9 2 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|154150558|ref|YP_001404176.1| - 1.9e-10 40.2 18.2 1.9e-10 40.2 18.2 3.5 3 2 0 3 3 3 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|154150558|ref|YP_001404176.1| - 4e-05 22.6 25.7 0.0036 16.2 0.8 2.9 3 1 0 3 3 3 2 MFS_1 like family MFS_2 PF13347.6 gi|154150558|ref|YP_001404176.1| - 1.8 7.1 44.9 0.042 12.4 15.1 3.2 2 1 0 3 3 3 0 MFS/sugar transport protein DHH PF01368.20 gi|154150559|ref|YP_001404177.1| - 5.4e-25 87.6 0.0 9.4e-25 86.8 0.0 1.4 1 1 0 1 1 1 1 DHH family DRTGG PF07085.12 gi|154150559|ref|YP_001404177.1| - 1.6e-19 69.6 1.9 4e-19 68.4 1.9 1.7 1 0 0 1 1 1 1 DRTGG domain CBS PF00571.28 gi|154150559|ref|YP_001404177.1| - 7.6e-11 42.3 0.1 0.00013 22.4 0.0 3.0 2 0 0 2 2 2 2 CBS domain DHHA2 PF02833.14 gi|154150559|ref|YP_001404177.1| - 9.2e-11 42.1 0.0 2.2e-10 40.9 0.0 1.6 1 0 0 1 1 1 1 DHHA2 domain Hpr_kinase_N PF02603.16 gi|154150559|ref|YP_001404177.1| - 0.15 12.1 0.0 0.38 10.8 0.0 1.6 1 0 0 1 1 1 0 HPr Serine kinase N terminus PadR PF03551.14 gi|154150561|ref|YP_001404179.1| - 2.5e-16 59.4 0.0 4.2e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|154150561|ref|YP_001404179.1| - 7.6e-05 23.3 0.0 0.00016 22.3 0.0 1.6 2 0 0 2 2 2 1 Replication terminator protein HTH_34 PF13601.6 gi|154150561|ref|YP_001404179.1| - 0.0025 18.0 0.0 0.013 15.6 0.0 2.0 1 1 0 1 1 1 1 Winged helix DNA-binding domain ABC_tran PF00005.27 gi|154150562|ref|YP_001404180.1| - 5.3e-34 117.7 0.0 1.1e-33 116.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter DUF4162 PF13732.6 gi|154150562|ref|YP_001404180.1| - 4.1e-12 46.6 0.0 9.5e-12 45.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|154150562|ref|YP_001404180.1| - 3.9e-10 40.0 5.7 4.2e-07 30.1 0.2 2.5 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|154150562|ref|YP_001404180.1| - 4e-06 26.8 0.1 0.015 15.0 0.1 2.3 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|154150562|ref|YP_001404180.1| - 0.00016 21.2 0.1 0.029 13.8 0.1 2.9 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|154150562|ref|YP_001404180.1| - 0.00031 21.2 0.3 0.0045 17.4 0.3 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|154150562|ref|YP_001404180.1| - 0.0028 18.2 1.2 0.0044 17.5 0.9 1.8 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|154150562|ref|YP_001404180.1| - 0.0049 16.5 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|154150562|ref|YP_001404180.1| - 0.0063 16.5 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|154150562|ref|YP_001404180.1| - 0.011 15.4 0.1 0.021 14.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|154150562|ref|YP_001404180.1| - 0.022 14.5 0.0 0.041 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|154150562|ref|YP_001404180.1| - 0.031 14.2 0.3 18 5.2 0.0 3.0 3 0 0 3 3 3 0 NTPase AAA_16 PF13191.6 gi|154150562|ref|YP_001404180.1| - 0.035 14.5 0.0 0.069 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain ABC2_membrane PF01061.24 gi|154150563|ref|YP_001404181.1| - 3e-38 131.4 25.4 4.6e-38 130.8 25.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|154150563|ref|YP_001404181.1| - 2e-13 50.2 26.9 2e-13 50.2 26.9 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein YbjQ_1 PF01906.17 gi|154150564|ref|YP_001404182.1| - 3.2e-37 127.3 0.2 3.6e-37 127.1 0.2 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.6 gi|154150564|ref|YP_001404182.1| - 0.00069 19.9 0.0 0.00094 19.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4156) HATPase_c_2 PF13581.6 gi|154150565|ref|YP_001404183.1| - 8.1e-20 71.0 0.0 1e-19 70.7 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|154150565|ref|YP_001404183.1| - 0.046 14.2 0.0 0.056 14.0 0.0 1.2 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|154150566|ref|YP_001404184.1| - 4.4e-17 62.3 0.0 4.9e-17 62.1 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain TyeA PF09059.10 gi|154150566|ref|YP_001404184.1| - 0.076 13.1 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 TyeA MacB_PCD PF12704.7 gi|154150567|ref|YP_001404185.1| - 1.3e-22 81.1 6.2 1.3e-22 81.1 6.2 2.4 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|154150567|ref|YP_001404185.1| - 3.7e-12 46.5 6.5 3.7e-12 46.5 6.5 3.4 3 0 0 3 3 3 1 FtsX-like permease family G0-G1_switch_2 PF15103.6 gi|154150567|ref|YP_001404185.1| - 0.14 12.6 3.2 0.16 12.4 0.1 2.6 3 0 0 3 3 3 0 G0/G1 switch protein 2 Promethin PF16015.5 gi|154150567|ref|YP_001404185.1| - 1.1 9.3 10.5 1.1 9.2 9.2 1.8 1 1 0 1 1 1 0 Promethin Serglycin PF04360.12 gi|154150567|ref|YP_001404185.1| - 1.3 8.9 5.7 5.4 6.9 3.5 2.5 3 0 0 3 3 3 0 Serglycin ABC_tran PF00005.27 gi|154150568|ref|YP_001404186.1| - 1.1e-32 113.4 0.0 1.4e-32 113.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154150568|ref|YP_001404186.1| - 4.2e-10 39.9 0.5 5.5e-07 29.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|154150568|ref|YP_001404186.1| - 3.8e-07 29.8 0.3 0.0014 18.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|154150568|ref|YP_001404186.1| - 0.00024 20.8 0.1 0.00048 19.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|154150568|ref|YP_001404186.1| - 0.0021 18.0 0.0 0.0043 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase IstB_IS21 PF01695.17 gi|154150568|ref|YP_001404186.1| - 0.0025 17.6 0.1 0.3 10.8 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|154150568|ref|YP_001404186.1| - 0.0064 16.9 0.1 0.016 15.6 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|154150568|ref|YP_001404186.1| - 0.0072 16.6 0.3 0.027 14.7 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|154150568|ref|YP_001404186.1| - 0.018 14.7 0.1 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|154150568|ref|YP_001404186.1| - 0.036 13.8 0.0 0.068 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|154150568|ref|YP_001404186.1| - 0.053 14.0 0.7 0.11 13.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|154150568|ref|YP_001404186.1| - 0.063 13.0 0.1 12 5.5 0.0 2.2 1 1 0 2 2 2 0 AAA ATPase domain NTPase_1 PF03266.15 gi|154150568|ref|YP_001404186.1| - 0.085 12.8 0.2 14 5.6 0.0 2.2 2 0 0 2 2 2 0 NTPase G-alpha PF00503.20 gi|154150568|ref|YP_001404186.1| - 0.093 11.9 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit ATPase_2 PF01637.18 gi|154150568|ref|YP_001404186.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|154150568|ref|YP_001404186.1| - 0.19 10.9 0.1 0.41 9.8 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain CARDB PF07705.11 gi|154150569|ref|YP_001404187.1| - 7.1e-07 29.4 9.3 4.1e-05 23.8 0.3 2.7 3 0 0 3 3 3 2 CARDB DUF4366 PF14283.6 gi|154150569|ref|YP_001404187.1| - 0.0096 16.0 0.0 0.034 14.2 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4366) NPL PF17800.1 gi|154150569|ref|YP_001404187.1| - 0.073 13.6 0.0 0.5 10.9 0.0 2.3 1 1 0 1 1 1 0 Nucleoplasmin-like domain Transglut_C PF00927.22 gi|154150569|ref|YP_001404187.1| - 0.091 12.9 0.0 0.27 11.4 0.0 1.8 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.9 gi|154150569|ref|YP_001404187.1| - 0.12 12.7 1.2 0.36 11.1 0.1 2.5 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase TrmB PF01978.19 gi|154150570|ref|YP_001404188.1| - 8.5e-16 57.6 0.3 1.7e-15 56.6 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|154150570|ref|YP_001404188.1| - 0.0021 18.0 0.1 0.19 11.7 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|154150570|ref|YP_001404188.1| - 0.0028 17.5 0.2 0.0081 16.0 0.0 1.8 2 0 0 2 2 2 1 MarR family Regulator_TrmB PF11495.8 gi|154150570|ref|YP_001404188.1| - 0.045 12.9 0.0 0.069 12.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB PadR PF03551.14 gi|154150570|ref|YP_001404188.1| - 0.071 13.1 0.0 0.59 10.1 0.0 2.3 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.19 gi|154150570|ref|YP_001404188.1| - 0.34 11.1 0.1 0.34 11.1 0.1 2.2 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain HATPase_c PF02518.26 gi|154150571|ref|YP_001404189.1| - 2.3e-12 47.4 0.0 4.8e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|154150571|ref|YP_001404189.1| - 0.069 13.1 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain EcoEI_R_C PF08463.10 gi|154150573|ref|YP_001404191.1| - 6.2e-33 114.3 0.4 1.3e-32 113.2 0.4 1.6 1 0 0 1 1 1 1 EcoEI R protein C-terminal ResIII PF04851.15 gi|154150573|ref|YP_001404191.1| - 6.4e-31 107.6 0.0 3.6e-30 105.2 0.0 2.3 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit SWI2_SNF2 PF18766.1 gi|154150573|ref|YP_001404191.1| - 2.4e-15 56.8 1.3 1.7e-13 50.7 0.2 3.1 2 1 0 2 2 2 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|154150573|ref|YP_001404191.1| - 5.6e-08 33.0 0.0 5.7e-06 26.4 0.0 2.5 1 1 1 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DEAD PF00270.29 gi|154150573|ref|YP_001404191.1| - 6.4e-07 29.3 0.0 8.5e-06 25.6 0.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|154150573|ref|YP_001404191.1| - 8.7e-07 29.3 0.0 3.1e-05 24.3 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain UvrD-helicase PF00580.21 gi|154150573|ref|YP_001404191.1| - 0.0015 18.1 0.4 0.0031 17.1 0.0 1.6 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain Microtub_bd PF16796.5 gi|154150573|ref|YP_001404191.1| - 0.04 13.9 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 Microtubule binding Kinesin PF00225.23 gi|154150573|ref|YP_001404191.1| - 0.04 12.9 0.0 0.072 12.0 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain KdpD PF02702.17 gi|154150573|ref|YP_001404191.1| - 0.041 13.3 0.0 0.098 12.1 0.0 1.6 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain DUF853 PF05872.12 gi|154150573|ref|YP_001404191.1| - 0.052 12.1 0.0 0.081 11.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) PhoH PF02562.16 gi|154150573|ref|YP_001404191.1| - 0.055 12.9 0.1 0.1 12.0 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein T2SSE PF00437.20 gi|154150573|ref|YP_001404191.1| - 0.06 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein N6_Mtase PF02384.16 gi|154150574|ref|YP_001404192.1| - 3.4e-61 207.2 0.0 4.6e-61 206.8 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|154150574|ref|YP_001404192.1| - 1.5e-12 48.4 0.0 4.7e-10 40.2 0.0 2.9 2 1 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|154150574|ref|YP_001404192.1| - 0.00015 21.5 0.0 0.00059 19.6 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|154150574|ref|YP_001404192.1| - 0.00061 19.4 0.1 0.002 17.7 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|154150574|ref|YP_001404192.1| - 0.074 12.8 0.1 1.1 9.1 0.1 2.2 1 1 0 1 1 1 0 Methyltransferase domain Methylase_S PF01420.19 gi|154150575|ref|YP_001404193.1| - 9.2e-28 97.6 0.0 7.3e-16 58.8 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Herpes_UL92 PF03048.14 gi|154150577|ref|YP_001404195.1| - 0.024 14.4 0.0 0.027 14.2 0.0 1.1 1 0 0 1 1 1 0 UL92 family PHD_like PF12910.7 gi|154150578|ref|YP_001404196.1| - 0.0016 18.5 0.8 0.003 17.6 0.1 1.8 2 0 0 2 2 2 1 Antitoxin of toxin-antitoxin, RelE / RelB, TA system Myosin_N PF02736.19 gi|154150578|ref|YP_001404196.1| - 0.015 15.2 0.1 0.65 9.9 0.1 2.6 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Amidohydro_2 PF04909.14 gi|154150579|ref|YP_001404197.1| - 1.3e-49 169.6 1.4 1.5e-49 169.4 1.4 1.0 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|154150579|ref|YP_001404197.1| - 0.065 12.6 0.0 0.25 10.7 0.0 1.9 1 1 0 1 1 1 0 TatD related DNase DUF362 PF04015.12 gi|154150580|ref|YP_001404198.1| - 9.4e-32 110.9 0.0 1.2e-31 110.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) G-patch_2 PF12656.7 gi|154150580|ref|YP_001404198.1| - 0.15 12.1 0.0 0.57 10.3 0.0 2.0 2 0 0 2 2 2 0 G-patch domain NucS PF01939.16 gi|154150581|ref|YP_001404199.1| - 0.073 12.4 0.1 0.21 10.9 0.1 1.7 2 0 0 2 2 2 0 Endonuclease NucS AbiEii PF08843.11 gi|154150582|ref|YP_001404200.1| - 0.0012 18.9 0.4 0.005 16.8 0.4 1.9 1 1 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system URO-D PF01208.17 gi|154150583|ref|YP_001404201.1| - 8.6e-18 64.6 0.0 1e-13 51.2 0.0 2.5 2 1 0 2 2 2 2 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.19 gi|154150584|ref|YP_001404202.1| - 4.3e-22 78.4 0.6 6e-22 77.9 0.6 1.2 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|154150584|ref|YP_001404202.1| - 9.3e-14 51.6 0.2 2.1e-13 50.5 0.2 1.6 1 0 0 1 1 1 1 B12 binding domain ALAD PF00490.21 gi|154150584|ref|YP_001404202.1| - 0.087 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Delta-aminolevulinic acid dehydratase RACo_C_ter PF14574.6 gi|154150585|ref|YP_001404203.1| - 2.3e-81 272.7 0.0 3.8e-81 272.0 0.0 1.3 1 0 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|154150585|ref|YP_001404203.1| - 2.2e-57 193.3 0.1 6.4e-57 191.8 0.0 1.8 2 0 0 2 2 2 1 RACo middle region RACo_linker PF17650.1 gi|154150585|ref|YP_001404203.1| - 2e-20 72.4 0.0 4e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 RACo linker region Fer2 PF00111.27 gi|154150585|ref|YP_001404203.1| - 2.5e-10 40.2 0.1 5.5e-10 39.1 0.1 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain MtrH PF02007.18 gi|154150586|ref|YP_001404204.1| - 2.5e-97 325.6 0.2 3.2e-97 325.2 0.2 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit AAA_10 PF12846.7 gi|154150587|ref|YP_001404205.1| - 0.037 13.0 0.0 0.043 12.7 0.0 1.0 1 0 0 1 1 1 0 AAA-like domain VAPB_antitox PF02697.14 gi|154150587|ref|YP_001404205.1| - 0.07 13.9 0.4 0.12 13.1 0.4 1.5 1 1 0 1 1 1 0 Putative antitoxin ParE_toxin PF05016.15 gi|154150588|ref|YP_001404206.1| - 0.0003 21.3 2.6 0.00039 21.0 2.6 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Orn_Arg_deC_N PF02784.16 gi|154150589|ref|YP_001404207.1| - 9.7e-53 179.1 0.0 1.3e-52 178.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|154150589|ref|YP_001404207.1| - 1.7e-14 53.8 0.0 1.9e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|154150589|ref|YP_001404207.1| - 3.7e-06 26.7 0.0 5.1e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Sacchrp_dh_NADP PF03435.18 gi|154150590|ref|YP_001404208.1| - 6e-29 100.9 0.0 1.1e-28 100.1 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Sacchrp_dh_C PF16653.5 gi|154150590|ref|YP_001404208.1| - 1.4e-26 94.2 0.0 2.2e-26 93.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain GT87 PF09594.10 gi|154150591|ref|YP_001404209.1| - 1.8e-28 99.9 24.2 3.2e-28 99.0 24.2 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 87 EpsG PF14897.6 gi|154150591|ref|YP_001404209.1| - 6.9e-10 38.7 37.3 1.1e-09 38.1 37.3 1.3 1 0 0 1 1 1 1 EpsG family ResB PF05140.14 gi|154150591|ref|YP_001404209.1| - 0.13 11.0 2.1 0.22 10.2 2.1 1.2 1 0 0 1 1 1 0 ResB-like family Imm58 PF15581.6 gi|154150591|ref|YP_001404209.1| - 0.62 10.2 3.8 22 5.2 0.0 2.6 2 1 0 2 2 2 0 Immunity protein 58 DUF4094 PF13334.6 gi|154150591|ref|YP_001404209.1| - 0.79 10.2 1.9 2.1 8.8 1.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) Insulin_TMD PF17870.1 gi|154150591|ref|YP_001404209.1| - 5 7.3 0.0 5 7.3 0.0 4.2 5 0 0 5 5 5 0 Insulin receptor trans-membrane segment DUF2100 PF09873.9 gi|154150592|ref|YP_001404210.1| - 0.023 14.6 0.1 0.027 14.4 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2100) Aminotran_5 PF00266.19 gi|154150593|ref|YP_001404211.1| - 1.1e-17 64.1 0.0 1.5e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V SepSecS PF05889.13 gi|154150593|ref|YP_001404211.1| - 1.2e-17 63.7 0.0 2e-17 63.0 0.0 1.3 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS DegT_DnrJ_EryC1 PF01041.17 gi|154150593|ref|YP_001404211.1| - 0.0027 17.1 0.6 0.0037 16.6 0.6 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|154150593|ref|YP_001404211.1| - 0.12 11.1 0.0 0.2 10.4 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain PPK2 PF03976.14 gi|154150594|ref|YP_001404212.1| - 9e-136 450.6 6.9 1.6e-82 276.5 1.7 2.0 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) AAA_18 PF13238.6 gi|154150594|ref|YP_001404212.1| - 0.0044 17.6 0.2 2.1 8.9 0.1 2.6 2 0 0 2 2 2 2 AAA domain DUF2726 PF10881.8 gi|154150594|ref|YP_001404212.1| - 0.13 12.2 0.0 1.8 8.4 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2726) PPK2 PF03976.14 gi|154150595|ref|YP_001404213.1| - 1.7e-143 475.9 4.0 1.4e-83 279.9 1.9 2.0 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) AAA_18 PF13238.6 gi|154150595|ref|YP_001404213.1| - 0.0019 18.7 0.9 0.1 13.2 0.2 2.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|154150595|ref|YP_001404213.1| - 0.059 13.5 0.0 0.74 10.0 0.0 2.8 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|154150595|ref|YP_001404213.1| - 0.074 12.7 0.1 23 4.6 0.0 3.3 3 1 1 4 4 4 0 Thymidylate kinase DUF2150 PF09920.9 gi|154150596|ref|YP_001404214.1| - 5e-60 202.7 0.8 5.9e-60 202.5 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Ribosomal_S13_N PF08069.12 gi|154150597|ref|YP_001404215.1| - 0.079 13.0 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal S13/S15 N-terminal domain CcmH PF03918.14 gi|154150597|ref|YP_001404215.1| - 0.17 11.2 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 Cytochrome C biogenesis protein DJ-1_PfpI PF01965.24 gi|154150598|ref|YP_001404216.1| - 1.1e-37 129.4 0.8 1.2e-37 129.2 0.8 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|154150598|ref|YP_001404216.1| - 0.14 11.8 0.0 1.3 8.7 0.0 1.9 1 1 1 2 2 2 0 ThiJ/PfpI family-like TM_helix PF05552.12 gi|154150599|ref|YP_001404217.1| - 1.5e-15 56.9 8.9 2e-09 37.3 2.5 3.6 4 0 0 4 4 4 2 Conserved TM helix GWT1 PF06423.12 gi|154150599|ref|YP_001404217.1| - 0.0075 16.4 1.5 0.015 15.4 1.5 1.6 1 1 0 1 1 1 1 GWT1 FtsX PF02687.21 gi|154150599|ref|YP_001404217.1| - 0.087 13.3 25.3 0.23 11.9 6.9 3.2 2 1 1 3 3 3 0 FtsX-like permease family Colicin_V PF02674.16 gi|154150599|ref|YP_001404217.1| - 1 9.4 25.7 4.4 7.3 4.6 2.8 1 1 1 2 2 2 0 Colicin V production protein CPP1-like PF11833.8 gi|154150599|ref|YP_001404217.1| - 1.3 8.6 4.9 0.61 9.7 0.1 2.4 2 1 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like E1-E2_ATPase PF00122.20 gi|154150599|ref|YP_001404217.1| - 4.6 6.7 12.4 6.3 6.3 1.9 2.5 2 1 0 2 2 2 0 E1-E2 ATPase PAS PF00989.25 gi|154150600|ref|YP_001404218.1| - 5e-28 97.4 0.4 2.5e-08 33.9 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|154150600|ref|YP_001404218.1| - 1.7e-25 89.3 0.7 1e-07 32.1 0.0 3.2 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|154150600|ref|YP_001404218.1| - 2.4e-20 72.8 0.0 1.3e-08 35.0 0.0 3.5 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|154150600|ref|YP_001404218.1| - 8.7e-20 70.3 0.1 4.2e-07 29.8 0.0 3.9 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.12 gi|154150600|ref|YP_001404218.1| - 3.1e-19 69.0 0.0 5.6e-09 36.2 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_7 PF12860.7 gi|154150600|ref|YP_001404218.1| - 0.0032 17.6 6.7 6.5 7.0 0.1 5.0 4 2 0 4 4 4 2 PAS fold HTH_5 PF01022.20 gi|154150600|ref|YP_001404218.1| - 0.0036 17.1 0.0 0.0078 16.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TBPIP PF07106.13 gi|154150600|ref|YP_001404218.1| - 0.0041 17.0 0.1 0.0087 16.0 0.1 1.6 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain HTH_IclR PF09339.10 gi|154150600|ref|YP_001404218.1| - 0.015 15.1 0.0 0.035 13.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain LolA PF03548.15 gi|154150600|ref|YP_001404218.1| - 0.026 14.2 0.0 3.2 7.4 0.0 2.4 2 0 0 2 2 2 0 Outer membrane lipoprotein carrier protein LolA HTH_24 PF13412.6 gi|154150600|ref|YP_001404218.1| - 0.034 13.7 0.9 0.64 9.6 0.1 3.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|154150600|ref|YP_001404218.1| - 0.038 13.7 0.0 0.12 12.2 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|154150600|ref|YP_001404218.1| - 0.046 13.5 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.6 gi|154150600|ref|YP_001404218.1| - 0.077 13.0 0.0 0.4 10.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain NPCBM_assoc PF10633.9 gi|154150601|ref|YP_001404219.1| - 7e-06 26.2 7.8 0.026 14.8 0.3 4.0 4 1 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|154150601|ref|YP_001404219.1| - 1.1e-05 25.6 9.9 0.14 12.4 0.7 3.8 3 1 0 3 3 3 3 CARDB DUF11 PF01345.18 gi|154150601|ref|YP_001404219.1| - 0.043 14.1 17.1 2.9 8.3 1.2 5.2 3 3 0 3 3 3 0 Domain of unknown function DUF11 FeoB_associated PF12669.7 gi|154150601|ref|YP_001404219.1| - 1.2 9.6 3.0 2.5 8.6 3.0 1.5 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein MMPL PF03176.15 gi|154150602|ref|YP_001404220.1| - 8.2e-54 182.8 21.7 1.7e-32 112.7 5.1 2.7 3 0 0 3 3 3 2 MMPL family Sterol-sensing PF12349.8 gi|154150602|ref|YP_001404220.1| - 1.5e-11 44.3 13.3 3.7e-06 26.9 4.6 2.8 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|154150602|ref|YP_001404220.1| - 2.5e-06 27.0 33.3 3.9e-06 26.4 9.3 3.4 4 0 0 4 4 4 2 Protein export membrane protein Patched PF02460.18 gi|154150602|ref|YP_001404220.1| - 8.9e-05 20.8 23.5 0.004 15.3 9.9 2.3 2 0 0 2 2 2 2 Patched family ACR_tran PF00873.19 gi|154150602|ref|YP_001404220.1| - 0.00083 17.1 29.5 0.0076 14.0 15.9 2.3 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family CARDB PF07705.11 gi|154150603|ref|YP_001404221.1| - 5.5e-05 23.4 13.8 0.21 11.8 0.5 4.1 3 1 0 3 3 3 3 CARDB NPCBM_assoc PF10633.9 gi|154150603|ref|YP_001404221.1| - 0.00054 20.2 18.1 0.11 12.8 1.3 5.5 6 1 0 6 6 6 2 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_alpha PF03896.16 gi|154150603|ref|YP_001404221.1| - 0.019 14.2 0.0 0.63 9.2 0.0 2.3 2 0 0 2 2 2 0 Translocon-associated protein (TRAP), alpha subunit Cleaved_Adhesin PF07675.11 gi|154150603|ref|YP_001404221.1| - 0.072 13.0 1.0 0.13 12.1 1.0 1.4 1 0 0 1 1 1 0 Cleaved Adhesin Domain NPCBM_assoc PF10633.9 gi|154150604|ref|YP_001404222.1| - 4.5e-11 42.9 6.8 0.00063 20.0 0.0 3.8 3 1 0 3 3 3 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|154150604|ref|YP_001404222.1| - 1.2e-07 31.9 15.1 0.017 15.3 1.6 3.9 3 2 0 3 3 3 3 CARDB TNFR_16_TM PF18422.1 gi|154150604|ref|YP_001404222.1| - 0.03 14.3 0.6 0.064 13.2 0.6 1.5 1 0 0 1 1 1 0 Tumor necrosis factor receptor member 16 trans-membrane domain DUF4832 PF16116.5 gi|154150604|ref|YP_001404222.1| - 0.034 14.0 0.3 0.61 9.9 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4832) zinc_ribbon_2 PF13240.6 gi|154150606|ref|YP_001404224.1| - 1.6e-11 43.6 17.2 4.2e-06 26.3 6.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|154150606|ref|YP_001404224.1| - 2.2e-09 37.2 4.9 4.2e-05 23.5 0.3 2.4 2 0 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|154150606|ref|YP_001404224.1| - 3.2e-09 35.9 13.8 2.8e-05 23.3 2.9 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|154150606|ref|YP_001404224.1| - 1.1e-05 26.1 5.9 0.0043 17.8 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon family UPF0547 PF10571.9 gi|154150606|ref|YP_001404224.1| - 0.025 14.6 14.3 0.19 11.8 1.3 3.3 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 zinc-ribbon_6 PF10005.9 gi|154150606|ref|YP_001404224.1| - 0.03 15.0 0.6 2.4 8.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Myosin_TH1 PF06017.13 gi|154150606|ref|YP_001404224.1| - 0.16 11.6 0.2 0.24 11.1 0.2 1.2 1 0 0 1 1 1 0 Unconventional myosin tail, actin- and lipid-binding Prok-RING_1 PF14446.6 gi|154150606|ref|YP_001404224.1| - 0.29 11.1 8.2 3.9 7.5 2.0 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.6 gi|154150606|ref|YP_001404224.1| - 0.4 10.6 6.6 1 9.3 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF1272 PF06906.11 gi|154150606|ref|YP_001404224.1| - 0.44 10.7 10.8 0.72 10.0 1.8 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zinc-ribbons_6 PF07191.12 gi|154150606|ref|YP_001404224.1| - 0.5 10.4 3.0 3.3 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbons DUF2321 PF10083.9 gi|154150606|ref|YP_001404224.1| - 2.4 7.8 6.2 3.2 7.4 0.2 2.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Nudix_N_2 PF14803.6 gi|154150606|ref|YP_001404224.1| - 4.3 7.3 14.7 1.9 8.5 0.2 4.1 3 1 0 3 3 3 0 Nudix N-terminal Zn_ribbon_17 PF17120.5 gi|154150606|ref|YP_001404224.1| - 5.3 6.7 6.1 3.3 7.4 1.1 2.2 2 0 0 2 2 2 0 Zinc-ribbon, C4HC2 type AdoMet_Synthase PF01941.19 gi|154150607|ref|YP_001404225.1| - 1.7e-175 583.6 2.3 1.9e-175 583.4 2.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) HisG PF01634.18 gi|154150608|ref|YP_001404226.1| - 7.9e-52 175.4 0.2 1.2e-51 174.8 0.2 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|154150608|ref|YP_001404226.1| - 6.9e-27 93.4 0.2 1.8e-26 92.1 0.2 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|154150608|ref|YP_001404226.1| - 5.8e-06 26.4 0.1 5.2e-05 23.3 0.1 2.4 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|154150608|ref|YP_001404226.1| - 0.0094 15.4 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|154150608|ref|YP_001404226.1| - 0.029 14.0 0.1 0.12 12.0 0.0 1.9 1 1 1 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein His_biosynth PF00977.21 gi|154150609|ref|YP_001404227.1| - 4.7e-67 225.8 0.7 5.3e-67 225.6 0.7 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|154150609|ref|YP_001404227.1| - 5e-07 29.3 0.6 0.018 14.3 0.1 2.0 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|154150609|ref|YP_001404227.1| - 0.0001 21.6 0.7 0.07 12.3 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.17 gi|154150609|ref|YP_001404227.1| - 0.0067 15.6 0.1 0.95 8.5 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|154150609|ref|YP_001404227.1| - 0.0086 15.5 0.9 0.0086 15.5 0.9 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase PcrB PF01884.17 gi|154150609|ref|YP_001404227.1| - 0.061 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 PcrB family G3P_antiterm PF04309.12 gi|154150609|ref|YP_001404227.1| - 0.21 11.0 0.5 8.7 5.7 0.0 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.18 gi|154150609|ref|YP_001404227.1| - 0.36 9.8 6.5 0.35 9.8 0.3 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IGPD PF00475.18 gi|154150610|ref|YP_001404228.1| - 9.8e-57 191.3 0.3 1.2e-56 191.0 0.3 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase PKD PF00801.20 gi|154150612|ref|YP_001404230.1| - 1.5e-76 252.2 138.1 3.7e-08 33.1 4.8 11.3 11 0 0 11 11 11 10 PKD domain Y_Y_Y PF07495.13 gi|154150612|ref|YP_001404230.1| - 0.047 13.7 43.8 0.023 14.6 1.8 8.7 8 0 0 8 8 8 0 Y_Y_Y domain DZR PF12773.7 gi|154150613|ref|YP_001404231.1| - 0.0015 18.5 0.5 0.0026 17.7 0.5 1.5 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|154150613|ref|YP_001404231.1| - 0.003 17.4 4.4 0.21 11.5 0.3 2.4 2 0 0 2 2 2 2 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|154150613|ref|YP_001404231.1| - 0.0073 15.9 6.4 0.11 12.2 1.3 2.4 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain SUR7 PF06687.12 gi|154150613|ref|YP_001404231.1| - 0.018 14.7 3.2 0.022 14.4 3.2 1.1 1 0 0 1 1 1 0 SUR7/PalI family PspB PF06667.12 gi|154150613|ref|YP_001404231.1| - 0.02 14.9 1.6 0.12 12.5 0.1 2.1 2 0 0 2 2 2 0 Phage shock protein B MgtE PF01769.16 gi|154150613|ref|YP_001404231.1| - 0.064 13.6 4.9 0.085 13.2 4.9 1.2 1 0 0 1 1 1 0 Divalent cation transporter zf-ribbon_3 PF13248.6 gi|154150613|ref|YP_001404231.1| - 0.067 12.6 4.2 0.19 11.2 4.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|154150613|ref|YP_001404231.1| - 0.098 12.8 0.4 0.21 11.8 0.4 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-ISL3 PF14690.6 gi|154150613|ref|YP_001404231.1| - 0.24 12.1 1.9 7.6 7.3 0.2 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Bac_export_2 PF01312.19 gi|154150613|ref|YP_001404231.1| - 0.33 10.1 2.6 0.41 9.8 2.6 1.0 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family DUF3671 PF12420.8 gi|154150613|ref|YP_001404231.1| - 0.4 10.8 4.2 0.6 10.2 4.2 1.2 1 0 0 1 1 1 0 Protein of unknown function UPF0547 PF10571.9 gi|154150613|ref|YP_001404231.1| - 1.2 9.3 4.4 15 5.8 0.4 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|154150613|ref|YP_001404231.1| - 1.7 8.5 11.5 0.094 12.5 5.8 2.0 2 1 0 2 2 1 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|154150613|ref|YP_001404231.1| - 4 7.7 6.5 23 5.3 0.2 3.3 3 0 0 3 3 3 0 C4-type zinc ribbon domain TM2 PF05154.16 gi|154150613|ref|YP_001404231.1| - 4.2 7.8 9.9 0.072 13.4 1.9 2.1 2 0 0 2 2 2 0 TM2 domain BTP PF05232.12 gi|154150613|ref|YP_001404231.1| - 7.9 6.6 10.4 0.99 9.5 3.3 2.3 2 0 0 2 2 2 0 Chlorhexidine efflux transporter DHHC PF01529.20 gi|154150613|ref|YP_001404231.1| - 9 6.4 9.1 0.62 10.2 3.6 1.7 2 0 0 2 2 2 0 DHHC palmitoyltransferase CBFD_NFYB_HMF PF00808.23 gi|154150614|ref|YP_001404232.1| - 3.7e-15 55.9 1.1 4.4e-15 55.7 1.1 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|154150614|ref|YP_001404232.1| - 2.3e-11 44.2 0.2 2.3e-11 44.2 0.2 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|154150614|ref|YP_001404232.1| - 9.1e-10 38.6 0.2 9.4e-10 38.6 0.2 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold Bromo_TP PF07524.13 gi|154150614|ref|YP_001404232.1| - 5.8e-07 29.4 0.0 6.3e-07 29.3 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TAF PF02969.17 gi|154150614|ref|YP_001404232.1| - 1.7e-05 24.9 1.1 1.8e-05 24.8 1.1 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|154150614|ref|YP_001404232.1| - 2e-05 24.8 0.0 2.1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|154150614|ref|YP_001404232.1| - 0.00052 20.1 0.1 0.00053 20.1 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.13 gi|154150614|ref|YP_001404232.1| - 0.0061 17.0 0.1 0.0068 16.9 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 gi|154150614|ref|YP_001404232.1| - 0.012 15.6 0.1 0.018 15.1 0.1 1.3 1 1 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit TIP49_C PF17856.1 gi|154150614|ref|YP_001404232.1| - 0.12 12.5 0.3 0.5 10.6 0.1 1.9 1 1 1 2 2 2 0 TIP49 AAA-lid domain PCP_red PF08369.10 gi|154150614|ref|YP_001404232.1| - 0.12 12.6 2.7 1.8 8.9 0.6 2.4 1 1 1 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit AIRS PF00586.24 gi|154150616|ref|YP_001404234.1| - 1.7e-18 67.1 0.2 3.4e-18 66.1 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|154150616|ref|YP_001404234.1| - 1.5e-15 57.7 0.3 3.8e-15 56.3 0.0 1.9 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain DUF2016 PF09436.10 gi|154150616|ref|YP_001404234.1| - 0.057 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF2016) AAA PF00004.29 gi|154150617|ref|YP_001404235.1| - 2.8e-11 44.0 0.1 7.4e-11 42.6 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|154150617|ref|YP_001404235.1| - 6e-05 23.0 0.0 0.0001 22.3 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|154150617|ref|YP_001404235.1| - 0.00022 21.0 0.0 0.00054 19.7 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|154150617|ref|YP_001404235.1| - 0.00026 21.4 0.0 0.00082 19.8 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|154150617|ref|YP_001404235.1| - 0.00087 19.6 0.0 0.0023 18.2 0.0 1.8 1 0 0 1 1 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|154150617|ref|YP_001404235.1| - 0.00095 19.4 0.1 1.4 9.2 0.0 2.6 1 1 1 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|154150617|ref|YP_001404235.1| - 0.0014 18.2 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|154150617|ref|YP_001404235.1| - 0.0017 18.1 0.4 0.0034 17.1 0.4 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|154150617|ref|YP_001404235.1| - 0.0076 16.0 0.0 0.021 14.6 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_5 PF07728.14 gi|154150617|ref|YP_001404235.1| - 0.034 14.2 0.0 0.075 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|154150617|ref|YP_001404235.1| - 0.038 13.7 0.0 0.065 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|154150617|ref|YP_001404235.1| - 0.042 13.9 0.0 0.08 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|154150617|ref|YP_001404235.1| - 0.049 13.2 0.0 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|154150617|ref|YP_001404235.1| - 0.056 13.3 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial dnaA protein RNA_helicase PF00910.22 gi|154150617|ref|YP_001404235.1| - 0.06 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.13 gi|154150617|ref|YP_001404235.1| - 0.077 12.1 0.0 0.17 11.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) UPF0146 PF03686.13 gi|154150618|ref|YP_001404236.1| - 1.7e-20 73.2 0.0 2e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) DUF4535 PF15054.6 gi|154150618|ref|YP_001404236.1| - 0.025 14.3 0.1 0.043 13.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4535) Peptidase_M54 PF07998.11 gi|154150619|ref|YP_001404237.1| - 1.6e-19 70.6 0.0 1.9e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|154150619|ref|YP_001404237.1| - 0.00028 20.8 0.0 0.00032 20.6 0.0 1.3 1 0 0 1 1 1 1 Matrixin Metallopep PF12044.8 gi|154150619|ref|YP_001404237.1| - 0.014 14.0 0.1 0.019 13.6 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_3 PF13582.6 gi|154150619|ref|YP_001404237.1| - 0.086 13.4 0.1 0.12 12.9 0.1 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M43 PF05572.13 gi|154150619|ref|YP_001404237.1| - 0.1 12.5 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_5 PF13688.6 gi|154150619|ref|YP_001404237.1| - 0.11 12.6 0.1 0.13 12.4 0.1 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_4 PF13583.6 gi|154150619|ref|YP_001404237.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like RDD PF06271.12 gi|154150621|ref|YP_001404239.1| - 2.8e-16 60.0 6.0 3.5e-16 59.7 6.0 1.1 1 0 0 1 1 1 1 RDD family Enolase_like_N PF18374.1 gi|154150622|ref|YP_001404240.1| - 0.1 12.0 0.4 13 5.2 0.0 2.6 1 1 1 2 2 2 0 Enolase N-terminal domain-like Lactamase_B PF00753.27 gi|154150623|ref|YP_001404241.1| - 6.8e-25 88.2 0.7 9.9e-25 87.7 0.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|154150623|ref|YP_001404241.1| - 1.7e-05 24.4 0.0 4.3e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|154150623|ref|YP_001404241.1| - 0.0067 16.3 0.3 0.012 15.5 0.3 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HxlR PF01638.17 gi|154150624|ref|YP_001404242.1| - 2.9e-31 107.2 0.0 3.4e-31 106.9 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|154150624|ref|YP_001404242.1| - 0.0023 17.8 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|154150624|ref|YP_001404242.1| - 0.014 15.6 0.0 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain YHS PF04945.13 gi|154150624|ref|YP_001404242.1| - 0.024 14.7 0.4 0.042 14.0 0.4 1.4 1 0 0 1 1 1 0 YHS domain MarR PF01047.22 gi|154150624|ref|YP_001404242.1| - 0.044 13.7 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family Tautomerase PF01361.21 gi|154150625|ref|YP_001404243.1| - 1.3e-09 37.9 0.1 1.4e-09 37.7 0.1 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|154150625|ref|YP_001404243.1| - 0.00013 21.9 0.0 0.00014 21.9 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme HTH_Tnp_1 PF01527.20 gi|154150625|ref|YP_001404243.1| - 0.13 12.6 0.1 0.17 12.3 0.1 1.2 1 0 0 1 1 1 0 Transposase PemK_toxin PF02452.17 gi|154150626|ref|YP_001404244.1| - 4.7e-07 30.2 0.0 5.3e-07 30.0 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system UvrA_inter PF17760.1 gi|154150627|ref|YP_001404245.1| - 7.7e-33 112.8 0.4 2.8e-32 111.0 0.4 2.1 1 0 0 1 1 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|154150627|ref|YP_001404245.1| - 1.4e-28 99.4 0.0 5.1e-27 94.4 0.0 2.9 3 0 0 3 3 2 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|154150627|ref|YP_001404245.1| - 6e-20 72.2 2.4 6.2e-08 33.2 0.2 4.5 3 2 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|154150627|ref|YP_001404245.1| - 7e-12 45.2 2.1 0.007 15.8 0.6 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|154150627|ref|YP_001404245.1| - 8e-08 31.9 0.1 0.011 15.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|154150627|ref|YP_001404245.1| - 3.7e-07 30.3 3.4 0.024 14.4 0.0 4.2 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|154150627|ref|YP_001404245.1| - 6.3e-07 29.4 0.2 0.18 11.5 0.0 4.3 3 1 0 4 4 4 2 AAA ATPase domain AAA_16 PF13191.6 gi|154150627|ref|YP_001404245.1| - 1.3e-06 28.9 1.7 0.02 15.3 0.3 3.4 3 1 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|154150627|ref|YP_001404245.1| - 1.9e-06 28.2 2.2 0.53 10.5 0.0 4.1 4 0 0 4 4 4 2 AAA domain RsgA_GTPase PF03193.16 gi|154150627|ref|YP_001404245.1| - 2.5e-05 24.3 0.2 0.14 12.1 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase AAA_14 PF13173.6 gi|154150627|ref|YP_001404245.1| - 2.7e-05 24.2 0.2 0.71 9.9 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.6 gi|154150627|ref|YP_001404245.1| - 6.5e-05 23.5 0.7 0.007 16.9 0.2 2.8 2 0 0 2 2 2 1 AAA domain DnaJ_CXXCXGXG PF00684.19 gi|154150627|ref|YP_001404245.1| - 7.4e-05 23.0 2.6 0.061 13.7 0.2 3.5 3 0 0 3 3 3 1 DnaJ central domain ATPase PF06745.13 gi|154150627|ref|YP_001404245.1| - 8.3e-05 22.0 0.2 0.16 11.3 0.0 2.7 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|154150627|ref|YP_001404245.1| - 0.00011 21.8 0.3 0.27 10.8 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|154150627|ref|YP_001404245.1| - 0.00029 21.0 0.6 0.23 11.6 0.0 2.7 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|154150627|ref|YP_001404245.1| - 0.00039 19.8 0.1 0.15 11.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.6 gi|154150627|ref|YP_001404245.1| - 0.00041 20.9 0.6 0.55 10.8 0.0 3.2 3 0 0 3 3 2 1 AAA domain Viral_helicase1 PF01443.18 gi|154150627|ref|YP_001404245.1| - 0.00055 19.7 0.0 0.6 9.8 0.0 2.7 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase APS_kinase PF01583.20 gi|154150627|ref|YP_001404245.1| - 0.0014 18.6 2.2 0.78 9.6 0.0 3.7 3 0 0 3 3 3 1 Adenylylsulphate kinase cobW PF02492.19 gi|154150627|ref|YP_001404245.1| - 0.0018 17.9 0.3 1.4 8.5 0.0 2.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|154150627|ref|YP_001404245.1| - 0.0019 17.3 0.2 0.79 8.7 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein NACHT PF05729.12 gi|154150627|ref|YP_001404245.1| - 0.0031 17.5 0.1 1.7 8.5 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.6 gi|154150627|ref|YP_001404245.1| - 0.007 16.1 1.6 7.3 6.3 0.0 3.8 4 0 0 4 4 4 0 AAA domain BCA_ABC_TP_C PF12399.8 gi|154150627|ref|YP_001404245.1| - 0.019 14.9 1.4 0.57 10.2 0.1 2.8 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AAA_24 PF13479.6 gi|154150627|ref|YP_001404245.1| - 0.019 14.7 0.4 4.6 6.9 0.0 3.0 3 0 0 3 3 2 0 AAA domain MeaB PF03308.16 gi|154150627|ref|YP_001404245.1| - 0.022 13.8 0.1 2.6 7.0 0.0 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Adenine_deam_C PF13382.6 gi|154150627|ref|YP_001404245.1| - 0.025 13.9 0.2 4.5 6.6 0.0 2.4 2 0 0 2 2 2 0 Adenine deaminase C-terminal domain ResIII PF04851.15 gi|154150627|ref|YP_001404245.1| - 0.036 14.1 0.0 2 8.4 0.1 3.3 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.22 gi|154150627|ref|YP_001404245.1| - 0.037 14.4 0.1 12 6.3 0.0 2.9 3 0 0 3 3 2 0 RNA helicase Anti-TRAP PF15777.5 gi|154150627|ref|YP_001404245.1| - 0.067 13.2 8.8 0.88 9.6 0.6 3.5 4 0 0 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein AAA_28 PF13521.6 gi|154150627|ref|YP_001404245.1| - 0.068 13.4 0.6 2.9 8.1 0.0 2.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|154150627|ref|YP_001404245.1| - 0.085 12.6 0.5 31 4.2 0.0 3.7 4 0 0 4 4 4 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|154150627|ref|YP_001404245.1| - 0.28 10.3 1.5 10 5.2 0.0 2.7 3 0 0 3 3 3 0 NB-ARC domain NTPase_1 PF03266.15 gi|154150627|ref|YP_001404245.1| - 0.53 10.2 5.4 12 5.8 0.1 3.4 4 0 0 4 4 3 0 NTPase ATPase_2 PF01637.18 gi|154150627|ref|YP_001404245.1| - 0.59 10.0 2.8 10 6.0 0.0 3.1 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea Zn-ribbon_8 PF09723.10 gi|154150627|ref|YP_001404245.1| - 1.7 8.8 7.9 1.1 9.5 0.2 3.4 3 0 0 3 3 3 0 Zinc ribbon domain HEPN_Apea PF18739.1 gi|154150628|ref|YP_001404246.1| - 0.084 13.3 0.0 0.33 11.4 0.0 1.9 2 0 0 2 2 2 0 Apea-like HEPN 5_nucleotid_C PF02872.18 gi|154150629|ref|YP_001404247.1| - 7.3e-37 127.0 0.5 1.6e-36 126.0 0.5 1.6 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|154150629|ref|YP_001404247.1| - 1e-05 26.1 0.0 1.6e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase BNR_4 PF15892.5 gi|154150630|ref|YP_001404248.1| - 3.8e-15 56.0 1.2 0.042 13.2 0.1 6.2 3 2 3 6 6 6 6 BNR repeat-containing family member SBBP PF06739.11 gi|154150630|ref|YP_001404248.1| - 7.6 6.6 9.1 41 4.3 0.0 4.7 5 0 0 5 5 5 0 Beta-propeller repeat HTH_24 PF13412.6 gi|154150632|ref|YP_001404250.1| - 3.1e-06 26.6 0.0 1.1e-05 24.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|154150632|ref|YP_001404250.1| - 5.2e-06 26.2 0.0 8.1e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|154150632|ref|YP_001404250.1| - 7.6e-06 25.9 0.0 1.6e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|154150632|ref|YP_001404250.1| - 0.00019 21.2 0.1 0.00028 20.7 0.1 1.4 1 0 0 1 1 1 1 MarR family RPA_C PF08784.11 gi|154150632|ref|YP_001404250.1| - 0.00021 21.9 0.0 0.00032 21.3 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal Rrf2 PF02082.20 gi|154150632|ref|YP_001404250.1| - 0.00099 19.4 0.0 0.0023 18.3 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulator EAP30 PF04157.16 gi|154150632|ref|YP_001404250.1| - 0.0031 16.8 0.0 0.0052 16.1 0.0 1.3 1 0 0 1 1 1 1 EAP30/Vps36 family GerE PF00196.19 gi|154150632|ref|YP_001404250.1| - 0.0035 16.9 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|154150632|ref|YP_001404250.1| - 0.0038 17.0 0.0 0.013 15.3 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|154150632|ref|YP_001404250.1| - 0.0054 16.7 0.1 0.0089 16.0 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|154150632|ref|YP_001404250.1| - 0.0057 16.5 0.0 0.0095 15.8 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|154150632|ref|YP_001404250.1| - 0.012 15.1 0.1 0.059 12.9 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|154150632|ref|YP_001404250.1| - 0.019 15.2 0.0 0.8 9.9 0.0 2.1 1 1 1 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|154150632|ref|YP_001404250.1| - 0.024 14.4 0.0 0.031 14.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Sigma70_r4_2 PF08281.12 gi|154150632|ref|YP_001404250.1| - 0.027 14.1 0.0 0.062 13.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|154150632|ref|YP_001404250.1| - 0.031 14.4 0.0 0.064 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_15 PF12324.8 gi|154150632|ref|YP_001404250.1| - 0.041 13.8 0.0 0.07 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase TrmB PF01978.19 gi|154150632|ref|YP_001404250.1| - 0.056 13.3 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Spo0A_C PF08769.11 gi|154150632|ref|YP_001404250.1| - 0.064 13.4 0.0 0.072 13.2 0.0 1.3 1 0 0 1 1 1 0 Sporulation initiation factor Spo0A C terminal RP-C PF03428.13 gi|154150632|ref|YP_001404250.1| - 0.067 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_36 PF13730.6 gi|154150632|ref|YP_001404250.1| - 0.087 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|154150632|ref|YP_001404250.1| - 0.1 13.0 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|154150632|ref|YP_001404250.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Cpn10 PF00166.21 gi|154150633|ref|YP_001404251.1| - 1.3e-27 95.7 0.5 1.4e-27 95.5 0.5 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit DUF2124 PF09897.9 gi|154150633|ref|YP_001404251.1| - 0.051 13.5 0.0 0.061 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) Cpn60_TCP1 PF00118.24 gi|154150634|ref|YP_001404252.1| - 7.9e-91 305.1 21.5 1.5e-90 304.2 21.5 1.4 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family SurA_N PF09312.11 gi|154150634|ref|YP_001404252.1| - 0.006 16.6 1.2 0.036 14.1 0.0 2.7 2 1 1 3 3 3 1 SurA N-terminal domain Helicase_C PF00271.31 gi|154150635|ref|YP_001404253.1| - 2.9e-19 69.5 0.0 1.5e-17 63.9 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain RecQ_Zn_bind PF16124.5 gi|154150635|ref|YP_001404253.1| - 1.5e-18 67.3 1.2 3.5e-18 66.1 1.2 1.7 1 0 0 1 1 1 1 RecQ zinc-binding DEAD PF00270.29 gi|154150635|ref|YP_001404253.1| - 1.8e-17 63.7 0.0 3.2e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|154150635|ref|YP_001404253.1| - 0.00016 21.7 0.0 0.00039 20.5 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 gi|154150635|ref|YP_001404253.1| - 0.019 14.2 0.0 0.031 13.5 0.0 1.2 1 0 0 1 1 1 0 SecA DEAD-like domain UvrC_HhH_N PF08459.11 gi|154150636|ref|YP_001404254.1| - 5.6e-51 172.5 0.0 9.6e-51 171.7 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 gi|154150636|ref|YP_001404254.1| - 1.8e-11 44.1 0.1 6.6e-11 42.3 0.0 2.0 2 0 0 2 2 2 1 GIY-YIG catalytic domain UVR PF02151.19 gi|154150636|ref|YP_001404254.1| - 3.3e-06 26.7 0.8 9.2e-06 25.2 0.8 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif Rubrerythrin PF02915.17 gi|154150637|ref|YP_001404255.1| - 4.7e-05 23.8 0.1 5.9e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|154150637|ref|YP_001404255.1| - 0.00053 20.3 0.0 0.00079 19.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) COQ7 PF03232.13 gi|154150637|ref|YP_001404255.1| - 0.0035 17.1 0.1 0.0036 17.1 0.1 1.2 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 PP_kinase_N PF13089.6 gi|154150637|ref|YP_001404255.1| - 0.031 14.6 0.0 0.036 14.4 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase N-terminal domain Linocin_M18 PF04454.12 gi|154150638|ref|YP_001404256.1| - 8.1e-78 261.2 0.0 9.6e-78 261.0 0.0 1.0 1 0 0 1 1 1 1 Encapsulating protein for peroxidase DUF2184 PF09950.9 gi|154150638|ref|YP_001404256.1| - 0.00055 19.4 0.0 0.00077 18.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2184) Phage_capsid PF05065.13 gi|154150638|ref|YP_001404256.1| - 0.12 11.7 0.1 0.18 11.1 0.1 1.2 1 0 0 1 1 1 0 Phage capsid family QueC PF06508.13 gi|154150640|ref|YP_001404258.1| - 5.1e-69 232.0 0.0 5.7e-69 231.8 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|154150640|ref|YP_001404258.1| - 3.7e-06 26.8 0.0 6.5e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|154150640|ref|YP_001404258.1| - 5.9e-06 25.3 0.0 1.5e-05 23.9 0.0 1.6 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|154150640|ref|YP_001404258.1| - 0.00016 21.4 0.0 0.00021 21.0 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.14 gi|154150640|ref|YP_001404258.1| - 0.00061 19.4 0.0 0.00072 19.2 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.17 gi|154150640|ref|YP_001404258.1| - 0.044 12.9 0.0 0.053 12.6 0.0 1.1 1 0 0 1 1 1 0 NAD synthase CheW PF01584.19 gi|154150641|ref|YP_001404259.1| - 1.3e-26 92.8 0.8 1.5e-26 92.6 0.8 1.0 1 0 0 1 1 1 1 CheW-like domain OB_aCoA_assoc PF01796.17 gi|154150641|ref|YP_001404259.1| - 0.14 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 DUF35 OB-fold domain, acyl-CoA-associated MCPsignal PF00015.21 gi|154150642|ref|YP_001404260.1| - 6.9e-44 149.7 55.0 2.2e-40 138.3 27.2 4.5 1 1 4 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|154150642|ref|YP_001404260.1| - 3.2e-06 27.3 34.4 6.7e-05 23.1 4.4 5.2 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) PAS_4 PF08448.10 gi|154150642|ref|YP_001404260.1| - 5.7e-05 23.3 0.0 0.00035 20.8 0.0 2.4 2 0 0 2 2 2 1 PAS fold DUF812 PF05667.11 gi|154150642|ref|YP_001404260.1| - 0.0002 20.4 12.1 0.0002 20.4 12.1 2.4 1 1 0 2 2 2 1 Protein of unknown function (DUF812) PAS_9 PF13426.7 gi|154150642|ref|YP_001404260.1| - 0.00041 20.6 0.2 0.017 15.3 0.0 2.9 2 1 0 2 2 2 1 PAS domain PAS PF00989.25 gi|154150642|ref|YP_001404260.1| - 0.00041 20.3 0.2 0.0015 18.5 0.0 2.1 2 0 0 2 2 1 1 PAS fold Seryl_tRNA_N PF02403.22 gi|154150642|ref|YP_001404260.1| - 0.00078 19.6 3.2 0.00078 19.6 3.2 4.4 1 1 3 4 4 4 1 Seryl-tRNA synthetase N-terminal domain PAS_8 PF13188.7 gi|154150642|ref|YP_001404260.1| - 0.00084 19.3 0.2 0.0038 17.2 0.1 2.2 2 0 0 2 2 1 1 PAS domain CENP-F_leu_zip PF10473.9 gi|154150642|ref|YP_001404260.1| - 0.00099 19.2 11.3 0.0073 16.3 0.7 3.1 1 1 2 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_13 PF13166.6 gi|154150642|ref|YP_001404260.1| - 0.0039 15.9 27.3 0.0043 15.8 12.6 2.2 2 0 0 2 2 2 2 AAA domain IFT57 PF10498.9 gi|154150642|ref|YP_001404260.1| - 0.0043 16.1 15.1 0.069 12.1 5.3 2.6 2 1 0 2 2 2 2 Intra-flagellar transport protein 57 DUF1664 PF07889.12 gi|154150642|ref|YP_001404260.1| - 0.0092 16.0 5.0 0.0092 16.0 5.0 4.7 2 2 3 5 5 5 2 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 gi|154150642|ref|YP_001404260.1| - 0.011 15.9 24.1 0.85 9.8 3.9 4.5 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family FH2 PF02181.23 gi|154150642|ref|YP_001404260.1| - 0.024 13.8 8.7 0.33 10.0 1.4 2.4 2 0 0 2 2 2 0 Formin Homology 2 Domain Syntaxin_2 PF14523.6 gi|154150642|ref|YP_001404260.1| - 0.041 14.3 14.0 1.2 9.5 0.2 4.7 1 1 2 3 3 3 0 Syntaxin-like protein Mer2 PF09074.10 gi|154150642|ref|YP_001404260.1| - 0.055 13.3 13.8 0.075 12.8 8.2 2.7 2 0 0 2 2 2 0 Mer2 Mce4_CUP1 PF11887.8 gi|154150642|ref|YP_001404260.1| - 0.072 12.5 16.0 0.075 12.5 3.7 2.8 2 1 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative Laminin_II PF06009.12 gi|154150642|ref|YP_001404260.1| - 0.17 11.9 39.4 0.25 11.4 9.1 4.8 1 1 2 4 4 4 0 Laminin Domain II PAS_7 PF12860.7 gi|154150642|ref|YP_001404260.1| - 0.19 11.9 0.1 0.19 11.9 0.1 3.3 3 2 0 3 3 3 0 PAS fold DASH_Dad1 PF08649.10 gi|154150642|ref|YP_001404260.1| - 0.32 11.2 7.8 7 6.9 0.2 4.5 4 0 0 4 4 4 0 DASH complex subunit Dad1 Fez1 PF06818.15 gi|154150642|ref|YP_001404260.1| - 0.36 11.3 14.9 0.12 12.8 3.5 2.4 2 0 0 2 2 2 0 Fez1 DUF3450 PF11932.8 gi|154150642|ref|YP_001404260.1| - 0.48 9.7 25.1 1 8.6 3.6 3.6 2 2 1 3 3 3 0 Protein of unknown function (DUF3450) UPF0242 PF06785.11 gi|154150642|ref|YP_001404260.1| - 0.9 9.6 8.9 8.5 6.4 0.2 3.1 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus BAR_3 PF16746.5 gi|154150642|ref|YP_001404260.1| - 0.98 9.1 13.5 0.19 11.4 1.6 3.6 2 1 2 4 4 4 0 BAR domain of APPL family Noelin-1 PF12308.8 gi|154150642|ref|YP_001404260.1| - 1 9.4 10.1 1.3 9.0 0.4 4.1 3 2 1 4 4 3 0 Neurogenesis glycoprotein DUF2730 PF10805.8 gi|154150642|ref|YP_001404260.1| - 1.1 9.4 9.4 2.5 8.2 0.2 4.4 4 1 0 4 4 4 0 Protein of unknown function (DUF2730) HSBP1 PF06825.12 gi|154150642|ref|YP_001404260.1| - 1.3 9.0 6.9 2.7 7.9 0.6 4.0 4 0 0 4 4 4 0 Heat shock factor binding protein 1 Vps53_N PF04100.12 gi|154150642|ref|YP_001404260.1| - 1.9 7.3 28.7 0.26 10.2 11.3 3.9 2 1 4 6 6 6 0 Vps53-like, N-terminal Sec34 PF04136.15 gi|154150642|ref|YP_001404260.1| - 2.3 8.1 16.5 16 5.4 0.1 4.9 2 2 3 5 5 5 0 Sec34-like family YkyA PF10368.9 gi|154150642|ref|YP_001404260.1| - 2.5 7.7 29.2 0.44 10.2 8.6 4.2 2 2 0 2 2 2 0 Putative cell-wall binding lipoprotein DASH_Duo1 PF08651.10 gi|154150642|ref|YP_001404260.1| - 2.6 7.9 19.7 0.17 11.7 0.3 5.5 5 1 1 6 6 6 0 DASH complex subunit Duo1 TMPIT PF07851.13 gi|154150642|ref|YP_001404260.1| - 3.8 6.7 19.7 1.6 7.9 2.7 4.1 1 1 2 4 4 4 0 TMPIT-like protein Cortex-I_coil PF09304.10 gi|154150642|ref|YP_001404260.1| - 3.9 7.7 9.6 0.83 9.9 0.1 3.5 2 1 1 3 3 3 0 Cortexillin I, coiled coil Ferritin PF00210.24 gi|154150642|ref|YP_001404260.1| - 4.3 7.3 12.0 0.25 11.2 2.8 3.2 1 1 3 4 4 4 0 Ferritin-like domain PhageMin_Tail PF10145.9 gi|154150642|ref|YP_001404260.1| - 4.7 7.0 45.5 0.13 12.1 23.2 3.0 1 1 2 3 3 2 0 Phage-related minor tail protein Tweety PF04906.13 gi|154150642|ref|YP_001404260.1| - 4.7 5.8 15.6 2.7 6.6 1.3 2.8 2 1 1 3 3 3 0 Tweety Occludin_ELL PF07303.13 gi|154150642|ref|YP_001404260.1| - 7.3 7.4 8.3 73 4.2 0.1 4.7 3 1 2 5 5 5 0 Occludin homology domain MobC PF05713.11 gi|154150642|ref|YP_001404260.1| - 9.1 6.8 7.8 1.8 9.1 0.7 3.7 4 0 0 4 4 2 0 Bacterial mobilisation protein (MobC) Gpr1_Fun34_YaaH PF01184.19 gi|154150643|ref|YP_001404261.1| - 2.6e-32 112.1 24.8 3.5e-32 111.7 24.8 1.1 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family DUF5400 PF17379.2 gi|154150643|ref|YP_001404261.1| - 2.4 8.7 12.4 0.061 13.8 3.8 2.3 2 1 0 2 2 2 0 Family of unknown function (DUF5400) PAS_4 PF08448.10 gi|154150644|ref|YP_001404262.1| - 1.1e-26 93.3 0.2 2e-09 37.7 0.1 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|154150644|ref|YP_001404262.1| - 4.7e-22 78.2 0.0 4.4e-08 33.3 0.0 3.9 4 0 0 4 4 4 3 PAS domain PAS PF00989.25 gi|154150644|ref|YP_001404262.1| - 5.6e-20 71.4 0.0 6.4e-06 26.1 0.0 3.9 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|154150644|ref|YP_001404262.1| - 7.2e-11 42.2 0.0 6.1e-05 23.2 0.0 3.7 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|154150644|ref|YP_001404262.1| - 0.00015 21.7 0.2 5.5 7.1 0.0 4.3 4 0 0 4 4 4 1 PAS domain HTH_IclR PF09339.10 gi|154150644|ref|YP_001404262.1| - 0.00088 19.0 0.0 0.0025 17.6 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|154150644|ref|YP_001404262.1| - 0.0074 16.2 0.2 0.046 13.7 0.1 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|154150644|ref|YP_001404262.1| - 0.013 15.3 0.0 0.059 13.2 0.0 2.1 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 gi|154150644|ref|YP_001404262.1| - 0.029 13.9 0.2 0.099 12.2 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|154150644|ref|YP_001404262.1| - 0.045 13.7 0.5 0.32 11.0 0.0 2.3 2 0 0 2 2 2 0 HTH domain Fimbrial_CS1 PF04449.12 gi|154150644|ref|YP_001404262.1| - 0.15 12.2 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 CS1 type fimbrial major subunit HisKA PF00512.25 gi|154150644|ref|YP_001404262.1| - 0.16 12.0 0.2 0.16 12.0 0.2 2.5 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain z-alpha PF02295.17 gi|154150644|ref|YP_001404262.1| - 0.31 11.1 1.9 1.8 8.7 0.2 2.8 4 0 0 4 4 3 0 Adenosine deaminase z-alpha domain Response_reg PF00072.24 gi|154150645|ref|YP_001404263.1| - 7e-20 71.3 0.0 8.2e-20 71.0 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HisKA_7TM PF16927.5 gi|154150647|ref|YP_001404265.1| - 1.2e-58 198.7 27.5 1.6e-58 198.3 27.5 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|154150647|ref|YP_001404265.1| - 3e-09 37.3 0.0 5.3e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|154150647|ref|YP_001404265.1| - 3.5e-07 30.4 0.0 1e-06 28.9 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|154150647|ref|YP_001404265.1| - 1.1e-05 25.6 0.0 2.5e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|154150647|ref|YP_001404265.1| - 4.3e-05 23.4 0.0 0.00011 22.2 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|154150647|ref|YP_001404265.1| - 0.00096 19.1 0.0 0.0019 18.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|154150647|ref|YP_001404265.1| - 0.0039 17.2 0.1 0.019 14.9 0.1 2.1 1 1 0 1 1 1 1 PAS fold RuBisCO_large PF00016.20 gi|154150648|ref|YP_001404266.1| - 4e-90 302.0 1.5 4.9e-90 301.7 1.5 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|154150648|ref|YP_001404266.1| - 2.5e-42 143.8 0.0 5.5e-42 142.7 0.0 1.6 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain UvrB_inter PF17757.1 gi|154150649|ref|YP_001404267.1| - 3.5e-31 107.2 1.1 6.8e-31 106.3 0.4 1.9 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 gi|154150649|ref|YP_001404267.1| - 4e-22 77.8 3.8 5.2e-22 77.4 2.5 1.9 2 0 0 2 2 2 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|154150649|ref|YP_001404267.1| - 5e-17 62.2 0.2 1.1e-16 61.1 0.2 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|154150649|ref|YP_001404267.1| - 1.4e-10 41.5 0.8 5.2e-09 36.3 0.0 3.1 3 1 1 4 4 4 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|154150649|ref|YP_001404267.1| - 1.1e-08 34.5 1.1 4.8e-08 32.5 1.1 2.2 1 0 0 1 1 1 1 UvrB/uvrC motif AAA_30 PF13604.6 gi|154150649|ref|YP_001404267.1| - 4e-06 26.7 0.0 0.0014 18.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain DEAD PF00270.29 gi|154150649|ref|YP_001404267.1| - 0.0022 17.8 0.0 0.16 11.8 0.0 3.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|154150649|ref|YP_001404267.1| - 0.025 14.8 0.0 0.17 12.2 0.0 2.4 3 0 0 3 3 3 0 AAA domain Microtub_bd PF16796.5 gi|154150649|ref|YP_001404267.1| - 0.033 14.1 0.0 0.11 12.4 0.0 1.9 1 0 0 1 1 1 0 Microtubule binding AAA_19 PF13245.6 gi|154150649|ref|YP_001404267.1| - 0.05 13.9 2.4 7.2 6.9 0.1 2.9 3 1 0 3 3 3 0 AAA domain Flavi_DEAD PF07652.14 gi|154150649|ref|YP_001404267.1| - 0.068 13.1 0.8 0.28 11.2 0.1 2.4 3 0 0 3 3 3 0 Flavivirus DEAD domain UvrD-helicase PF00580.21 gi|154150649|ref|YP_001404267.1| - 0.15 11.5 9.3 1.6 8.2 4.5 2.4 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain PAS_9 PF13426.7 gi|154150650|ref|YP_001404268.1| - 4.5e-27 94.3 0.1 1.1e-12 48.1 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|154150650|ref|YP_001404268.1| - 5.5e-15 55.3 0.1 2.4e-09 37.2 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|154150650|ref|YP_001404268.1| - 5.4e-14 52.4 0.0 2.1e-09 37.6 0.1 2.7 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|154150650|ref|YP_001404268.1| - 6.4e-11 42.0 0.0 1e-06 28.6 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|154150650|ref|YP_001404268.1| - 1.4e-09 38.1 0.0 6.9e-05 23.1 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_7 PF12860.7 gi|154150650|ref|YP_001404268.1| - 8.1e-06 26.0 0.2 0.0092 16.1 0.0 3.0 2 2 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|154150650|ref|YP_001404268.1| - 0.0075 16.3 0.2 0.052 13.6 0.1 2.4 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain Orai-1 PF07856.12 gi|154150650|ref|YP_001404268.1| - 0.21 11.2 6.5 0.42 10.3 6.5 1.5 1 0 0 1 1 1 0 Mediator of CRAC channel activity DUF4118 PF13493.6 gi|154150650|ref|YP_001404268.1| - 3.7 7.4 15.7 7.2 6.5 15.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) DNA_pol_B PF00136.21 gi|154150651|ref|YP_001404269.1| - 1.5e-47 162.4 0.3 3.8e-47 161.1 0.3 1.5 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|154150651|ref|YP_001404269.1| - 9.6e-29 100.6 0.0 4.7e-28 98.3 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|154150651|ref|YP_001404269.1| - 0.0023 17.9 0.0 0.0071 16.3 0.0 1.9 1 0 0 1 1 1 1 RNase_H superfamily Ldh_1_N PF00056.23 gi|154150652|ref|YP_001404270.1| - 3.2e-21 75.9 0.0 5e-21 75.3 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|154150652|ref|YP_001404270.1| - 3.6e-13 49.8 0.0 5.9e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain 2-Hacid_dh_C PF02826.19 gi|154150652|ref|YP_001404270.1| - 0.03 13.7 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|154150652|ref|YP_001404270.1| - 0.08 12.3 0.2 0.13 11.6 0.2 1.3 1 0 0 1 1 1 0 ThiF family DHO_dh PF01180.21 gi|154150653|ref|YP_001404271.1| - 6.4e-53 179.9 0.2 1.1e-52 179.1 0.2 1.3 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|154150653|ref|YP_001404271.1| - 6.1e-09 35.4 0.1 5.2e-05 22.5 0.0 2.0 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|154150653|ref|YP_001404271.1| - 2.2e-06 27.3 0.9 2.2e-06 27.3 0.9 1.4 2 0 0 2 2 2 1 Nitronate monooxygenase DUF561 PF04481.12 gi|154150653|ref|YP_001404271.1| - 0.0011 18.2 0.9 0.0028 16.9 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|154150653|ref|YP_001404271.1| - 0.0019 17.7 0.1 0.0058 16.1 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|154150653|ref|YP_001404271.1| - 0.027 13.5 0.2 0.055 12.5 0.2 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|154150653|ref|YP_001404271.1| - 0.039 13.4 0.1 0.14 11.6 0.1 1.9 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DHODB_Fe-S_bind PF10418.9 gi|154150654|ref|YP_001404272.1| - 1.5e-13 50.3 5.0 2.8e-13 49.4 5.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|154150654|ref|YP_001404272.1| - 3.1e-05 24.6 0.1 0.00015 22.3 0.1 2.1 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_3 PF13085.6 gi|154150654|ref|YP_001404272.1| - 0.091 12.8 0.8 0.19 11.8 0.8 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Spo0M PF07070.11 gi|154150654|ref|YP_001404272.1| - 0.19 11.3 0.0 0.31 10.6 0.0 1.3 1 0 0 1 1 1 0 SpoOM protein PAS PF00989.25 gi|154150655|ref|YP_001404273.1| - 1.6e-08 34.5 0.4 2.2e-06 27.7 0.0 2.6 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|154150655|ref|YP_001404273.1| - 2.2e-08 33.9 0.0 1.5e-06 28.1 0.0 2.5 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.26 gi|154150655|ref|YP_001404273.1| - 2.6e-08 34.4 0.0 5e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|154150655|ref|YP_001404273.1| - 1.1e-06 28.8 0.0 1.4e-05 25.2 0.0 2.6 2 0 0 2 2 2 1 PAS domain SPOB_a PF14689.6 gi|154150655|ref|YP_001404273.1| - 0.00021 20.9 0.6 0.00059 19.5 0.1 2.1 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_4 PF08448.10 gi|154150655|ref|YP_001404273.1| - 0.00021 21.5 0.0 0.00074 19.8 0.0 1.9 2 0 0 2 2 2 1 PAS fold HIP1_clath_bdg PF16515.5 gi|154150655|ref|YP_001404273.1| - 0.076 13.6 1.0 0.14 12.8 1.0 1.3 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF4118 PF13493.6 gi|154150655|ref|YP_001404273.1| - 0.92 9.3 8.2 2.3 8.0 8.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4118) PAS_8 PF13188.7 gi|154150656|ref|YP_001404274.1| - 3.6e-06 26.9 0.0 8.5e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|154150656|ref|YP_001404274.1| - 5.1e-05 23.5 0.0 0.00023 21.4 0.0 1.9 1 1 1 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|154150656|ref|YP_001404274.1| - 0.00097 19.4 0.0 0.0016 18.7 0.0 1.4 1 0 0 1 1 1 1 PAS fold DegQ PF08181.11 gi|154150656|ref|YP_001404274.1| - 0.071 13.2 1.1 0.14 12.3 1.1 1.4 1 0 0 1 1 1 0 DegQ (SacQ) family CREPT PF16566.5 gi|154150656|ref|YP_001404274.1| - 0.087 13.0 0.4 0.14 12.3 0.4 1.3 1 0 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour MetOD2 PF18548.1 gi|154150656|ref|YP_001404274.1| - 0.19 11.8 1.9 0.21 11.7 0.4 1.7 2 0 0 2 2 2 0 Metanogen output domain 2 UL73_N PF12522.8 gi|154150656|ref|YP_001404274.1| - 0.2 11.4 1.0 0.41 10.4 1.0 1.5 1 0 0 1 1 1 0 Cytomegalovirus glycoprotein N terminal NTP_transf_3 PF12804.7 gi|154150657|ref|YP_001404275.1| - 6.2e-30 104.7 0.0 7.6e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|154150657|ref|YP_001404275.1| - 0.0011 18.8 0.0 0.0013 18.5 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ApbA_C PF08546.11 gi|154150658|ref|YP_001404276.1| - 7.7e-32 110.1 0.0 1.3e-31 109.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|154150658|ref|YP_001404276.1| - 7.4e-25 87.4 0.0 1.2e-24 86.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|154150658|ref|YP_001404276.1| - 0.043 14.1 0.1 0.076 13.3 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain DNA_binding_1 PF01035.20 gi|154150659|ref|YP_001404277.1| - 2.9e-26 91.4 0.1 4.3e-26 90.8 0.1 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4_2 PF08281.12 gi|154150659|ref|YP_001404277.1| - 0.067 12.9 0.0 0.68 9.7 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|154150659|ref|YP_001404277.1| - 0.17 11.7 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Helicase_C_2 PF13307.6 gi|154150660|ref|YP_001404278.1| - 7.9e-30 104.3 0.0 1.3e-29 103.5 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|154150660|ref|YP_001404278.1| - 1.3e-18 67.3 0.3 2.6e-13 50.0 0.1 3.1 3 0 0 3 3 3 2 DEAD_2 HBB PF06777.11 gi|154150660|ref|YP_001404278.1| - 2.3e-14 53.5 0.0 9.8e-14 51.5 0.0 1.9 2 0 0 2 2 2 1 Helical and beta-bridge domain ResIII PF04851.15 gi|154150660|ref|YP_001404278.1| - 1.9e-06 28.0 0.0 0.025 14.6 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|154150660|ref|YP_001404278.1| - 0.0025 17.6 0.6 0.94 9.2 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|154150660|ref|YP_001404278.1| - 0.0033 17.7 0.9 0.16 12.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|154150660|ref|YP_001404278.1| - 0.026 14.9 0.2 0.12 12.7 0.1 2.1 2 0 0 2 2 2 0 AAA ATPase domain Lyase_1 PF00206.20 gi|154150661|ref|YP_001404279.1| - 1.7e-53 182.0 0.5 2.4e-53 181.6 0.5 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|154150661|ref|YP_001404279.1| - 1.9e-17 63.6 0.1 1.9e-17 63.6 0.1 2.3 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|154150661|ref|YP_001404279.1| - 0.00066 19.8 0.1 0.0018 18.3 0.1 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal PAS PF00989.25 gi|154150662|ref|YP_001404280.1| - 9.7e-22 77.1 0.0 4.9e-10 39.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|154150662|ref|YP_001404280.1| - 4.4e-21 75.1 0.1 4.9e-11 42.8 0.1 2.4 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|154150662|ref|YP_001404280.1| - 6e-19 67.6 0.1 6.7e-09 35.6 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|154150662|ref|YP_001404280.1| - 2e-17 63.7 0.0 3.5e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|154150662|ref|YP_001404280.1| - 8.1e-14 51.4 0.4 1.5e-13 50.5 0.4 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|154150662|ref|YP_001404280.1| - 1.8e-12 47.4 0.0 7e-07 29.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|154150662|ref|YP_001404280.1| - 1.4e-08 35.0 0.0 0.0092 16.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c_3 PF13589.6 gi|154150662|ref|YP_001404280.1| - 0.088 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|154150663|ref|YP_001404281.1| - 6.1e-20 71.5 0.0 6.8e-20 71.3 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.11 gi|154150663|ref|YP_001404281.1| - 0.00041 20.7 0.0 0.0005 20.4 0.0 1.1 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ CBS PF00571.28 gi|154150663|ref|YP_001404281.1| - 0.0084 16.5 0.0 0.11 13.0 0.0 2.3 2 0 0 2 2 2 1 CBS domain STAS PF01740.21 gi|154150663|ref|YP_001404281.1| - 0.018 14.7 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 STAS domain PAS PF00989.25 gi|154150664|ref|YP_001404282.1| - 4e-54 181.4 0.0 1e-07 31.9 0.0 8.7 8 2 0 8 8 8 7 PAS fold PAS_4 PF08448.10 gi|154150664|ref|YP_001404282.1| - 6.9e-49 164.7 11.0 3.8e-10 40.0 0.0 9.1 9 1 0 9 9 9 7 PAS fold PAS_9 PF13426.7 gi|154150664|ref|YP_001404282.1| - 4.6e-44 148.9 0.0 4.2e-08 33.4 0.0 7.9 8 0 0 8 8 8 6 PAS domain PAS_8 PF13188.7 gi|154150664|ref|YP_001404282.1| - 8.5e-33 111.8 0.0 2.3e-05 24.3 0.0 8.5 8 0 0 8 8 8 6 PAS domain PAS_3 PF08447.12 gi|154150664|ref|YP_001404282.1| - 9.7e-33 112.3 0.0 3.2e-09 36.9 0.1 7.0 7 0 0 7 7 7 5 PAS fold Response_reg PF00072.24 gi|154150664|ref|YP_001404282.1| - 2.5e-20 72.7 0.0 5.3e-20 71.7 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|154150664|ref|YP_001404282.1| - 6.2e-13 49.2 0.1 2.6e-12 47.2 0.0 2.2 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|154150664|ref|YP_001404282.1| - 4.1e-12 46.6 0.0 1e-11 45.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|154150664|ref|YP_001404282.1| - 5.9e-05 23.7 0.0 0.00022 21.9 0.0 2.0 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|154150664|ref|YP_001404282.1| - 0.0012 18.9 1.3 0.0016 18.5 0.0 1.9 2 0 0 2 2 1 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|154150664|ref|YP_001404282.1| - 0.0044 17.6 0.0 10 6.7 0.0 3.8 4 0 0 4 4 4 1 PAS domain GAF_3 PF13492.6 gi|154150664|ref|YP_001404282.1| - 0.044 14.1 0.0 0.27 11.6 0.0 2.3 2 0 0 2 2 2 0 GAF domain HATPase_c_3 PF13589.6 gi|154150664|ref|YP_001404282.1| - 0.11 12.4 0.0 0.34 10.7 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|154150664|ref|YP_001404282.1| - 0.13 12.2 0.1 0.49 10.4 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain MLTR_LBD PF17765.1 gi|154150664|ref|YP_001404282.1| - 0.34 11.0 1.4 6.1 6.9 0.0 3.7 5 0 0 5 5 5 0 MmyB-like transcription regulator ligand binding domain Oxidored_q6 PF01058.22 gi|154150665|ref|YP_001404283.1| - 1e-19 70.6 0.0 1.4e-19 70.2 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|154150666|ref|YP_001404284.1| - 6.1e-39 133.7 0.0 5.4e-30 104.4 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|154150666|ref|YP_001404284.1| - 1.4e-15 58.0 0.0 2.5e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|154150666|ref|YP_001404284.1| - 0.0019 17.2 0.5 0.061 12.2 0.3 2.1 2 0 0 2 2 2 2 Nickel-dependent hydrogenase Proton_antipo_M PF00361.20 gi|154150667|ref|YP_001404285.1| - 2.1e-49 168.3 32.6 2.1e-49 168.3 32.6 2.9 4 0 0 4 4 4 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|154150667|ref|YP_001404285.1| - 0.079 13.1 0.3 0.079 13.1 0.3 3.3 1 1 1 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus COX4 PF02936.14 gi|154150667|ref|YP_001404285.1| - 3.4 7.7 5.0 12 5.9 0.1 3.6 3 0 0 3 3 3 0 Cytochrome c oxidase subunit IV NADHdh PF00146.21 gi|154150669|ref|YP_001404287.1| - 7.7e-34 117.4 27.5 9.4e-34 117.1 27.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|154150670|ref|YP_001404288.1| - 1.5e-58 198.4 32.1 1.5e-58 198.4 32.1 2.5 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|154150670|ref|YP_001404288.1| - 2.7e-07 30.6 2.5 2.5e-06 27.4 0.0 4.0 2 1 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF4271 PF14093.6 gi|154150670|ref|YP_001404288.1| - 1e-05 25.5 3.5 1e-05 25.5 3.5 4.8 4 2 1 5 5 5 1 Domain of unknown function (DUF4271) Acetyltransf_10 PF13673.7 gi|154150671|ref|YP_001404289.1| - 2.6e-12 46.8 0.0 3.2e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|154150671|ref|YP_001404289.1| - 9.9e-11 41.9 0.1 1.2e-10 41.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|154150671|ref|YP_001404289.1| - 1.3e-08 34.9 0.2 1.7e-07 31.3 0.2 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|154150671|ref|YP_001404289.1| - 1.5e-08 34.9 0.0 1.9e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|154150671|ref|YP_001404289.1| - 0.004 17.1 0.0 0.0065 16.4 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|154150671|ref|YP_001404289.1| - 0.013 16.1 0.0 0.018 15.7 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|154150671|ref|YP_001404289.1| - 0.046 13.3 0.0 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase PanZ PF12568.8 gi|154150671|ref|YP_001404289.1| - 0.15 11.8 0.1 0.2 11.4 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ DUF2148 PF09918.9 gi|154150673|ref|YP_001404291.1| - 9.5e-31 105.6 0.6 2.7e-30 104.2 0.6 1.8 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.13 gi|154150673|ref|YP_001404291.1| - 0.00017 21.2 3.5 0.00017 21.2 3.5 1.9 2 0 0 2 2 2 1 Putative Fe-S cluster TrmB PF01978.19 gi|154150674|ref|YP_001404292.1| - 3.3e-05 23.7 0.0 4.7e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|154150674|ref|YP_001404292.1| - 0.0009 19.1 0.1 0.0013 18.6 0.1 1.3 1 0 0 1 1 1 1 MarR family SMC_ScpB PF04079.16 gi|154150674|ref|YP_001404292.1| - 0.0071 16.0 0.0 0.008 15.8 0.0 1.3 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB PadR PF03551.14 gi|154150674|ref|YP_001404292.1| - 0.063 13.3 0.1 0.15 12.0 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Putative_PNPOx PF01243.20 gi|154150675|ref|YP_001404293.1| - 8.2e-18 64.4 0.0 1.1e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|154150675|ref|YP_001404293.1| - 0.0011 18.5 0.0 0.0014 18.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like DUF447 PF04289.12 gi|154150675|ref|YP_001404293.1| - 0.01 15.6 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) Pyridox_oxase_2 PF12766.7 gi|154150675|ref|YP_001404293.1| - 0.072 13.7 0.0 0.11 13.1 0.0 1.4 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase MTH865 PF07747.11 gi|154150676|ref|YP_001404294.1| - 4.9e-32 109.5 0.1 5.7e-32 109.3 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family HTH_5 PF01022.20 gi|154150677|ref|YP_001404295.1| - 1.6e-07 31.1 0.0 3.6e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|154150677|ref|YP_001404295.1| - 3.6e-06 26.9 0.0 8.4e-06 25.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|154150677|ref|YP_001404295.1| - 0.00072 19.1 0.0 0.0033 17.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|154150677|ref|YP_001404295.1| - 0.0014 18.6 0.0 0.0041 17.1 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix PAH PF02671.21 gi|154150677|ref|YP_001404295.1| - 0.011 15.9 0.5 0.057 13.6 0.1 2.4 2 1 0 2 2 2 0 Paired amphipathic helix repeat ATE_C PF04377.15 gi|154150677|ref|YP_001404295.1| - 0.089 13.4 0.1 0.15 12.7 0.1 1.3 1 0 0 1 1 1 0 Arginine-tRNA-protein transferase, C terminus MFS_1 PF07690.16 gi|154150678|ref|YP_001404296.1| - 8.4e-42 143.3 56.0 4.1e-23 81.9 31.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|154150678|ref|YP_001404296.1| - 1.6e-12 47.0 23.3 4.3e-07 29.1 4.8 2.7 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|154150678|ref|YP_001404296.1| - 2.8e-11 42.5 27.5 1.5e-06 26.9 7.1 2.1 1 1 0 2 2 2 2 Transmembrane secretion effector Sugar_tr PF00083.24 gi|154150678|ref|YP_001404296.1| - 1.7e-07 30.5 32.1 0.00086 18.3 16.4 2.9 2 1 0 2 2 2 2 Sugar (and other) transporter LacY_symp PF01306.19 gi|154150678|ref|YP_001404296.1| - 0.00067 18.5 23.6 0.032 13.0 7.8 2.4 1 1 1 2 2 2 2 LacY proton/sugar symporter MFS_4 PF06779.14 gi|154150678|ref|YP_001404296.1| - 0.0011 18.4 32.0 0.0015 17.9 32.0 1.2 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Folate_carrier PF01770.18 gi|154150678|ref|YP_001404296.1| - 0.0021 16.9 3.9 0.0021 16.9 3.9 1.8 2 1 0 2 2 2 1 Reduced folate carrier BT1 PF03092.16 gi|154150678|ref|YP_001404296.1| - 0.091 11.0 14.8 0.18 10.0 0.9 2.6 3 0 0 3 3 3 0 BT1 family Wzz PF02706.15 gi|154150678|ref|YP_001404296.1| - 6.3 7.2 6.0 1.9 8.9 0.1 3.1 2 1 0 2 2 2 0 Chain length determinant protein Isochorismatase PF00857.20 gi|154150680|ref|YP_001404298.1| - 1.2e-26 94.0 0.0 1.6e-26 93.6 0.0 1.2 1 0 0 1 1 1 1 Isochorismatase family LigB PF02900.18 gi|154150681|ref|YP_001404299.1| - 1e-20 73.9 0.0 1.2e-20 73.7 0.0 1.1 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Tautomerase PF01361.21 gi|154150682|ref|YP_001404300.1| - 7.7e-11 41.8 0.3 9.3e-11 41.5 0.3 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|154150682|ref|YP_001404300.1| - 8.1e-05 22.7 0.0 8.8e-05 22.5 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme DUF1904 PF08921.11 gi|154150682|ref|YP_001404300.1| - 0.004 17.4 0.0 0.0042 17.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1904) HATPase_c PF02518.26 gi|154150683|ref|YP_001404301.1| - 1.3e-11 45.0 0.0 2.9e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|154150683|ref|YP_001404301.1| - 2e-07 31.0 0.0 3.5e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|154150683|ref|YP_001404301.1| - 1.2e-06 28.7 0.0 2.1e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|154150683|ref|YP_001404301.1| - 1.2e-05 25.5 0.0 2.4e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|154150683|ref|YP_001404301.1| - 3.7e-05 23.6 0.0 8.3e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|154150683|ref|YP_001404301.1| - 0.21 11.4 0.0 0.48 10.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Fer4_NifH PF00142.18 gi|154150685|ref|YP_001404303.1| - 1.9e-128 427.6 0.5 2.1e-128 427.5 0.5 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|154150685|ref|YP_001404303.1| - 1.6e-12 47.6 0.0 3.9e-12 46.3 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|154150685|ref|YP_001404303.1| - 2.8e-09 37.2 0.6 1.7e-08 34.6 0.1 2.2 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|154150685|ref|YP_001404303.1| - 3.4e-06 26.7 0.4 4.8e-05 22.9 0.2 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|154150685|ref|YP_001404303.1| - 4.6e-06 26.1 0.8 1e-05 24.9 0.5 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 gi|154150685|ref|YP_001404303.1| - 0.00012 21.1 0.1 0.00019 20.5 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|154150685|ref|YP_001404303.1| - 0.0077 15.5 0.2 0.014 14.7 0.2 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_24 PF13479.6 gi|154150685|ref|YP_001404303.1| - 0.014 15.1 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|154150685|ref|YP_001404303.1| - 0.015 15.5 0.1 0.092 13.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|154150685|ref|YP_001404303.1| - 0.07 13.5 0.0 0.19 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.22 gi|154150685|ref|YP_001404303.1| - 0.12 12.0 0.5 0.27 10.9 0.5 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|154150685|ref|YP_001404303.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 gi|154150685|ref|YP_001404303.1| - 0.15 11.6 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|154150685|ref|YP_001404303.1| - 0.16 12.0 0.1 0.29 11.2 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Repressor_Mnt PF11423.8 gi|154150685|ref|YP_001404303.1| - 0.17 11.7 0.1 13 5.7 0.0 2.4 2 0 0 2 2 2 0 Regulatory protein Mnt NB-ARC PF00931.22 gi|154150685|ref|YP_001404303.1| - 0.26 10.4 0.4 0.42 9.8 0.4 1.3 1 0 0 1 1 1 0 NB-ARC domain P-II PF00543.22 gi|154150686|ref|YP_001404304.1| - 1.8e-25 89.5 1.0 2.1e-25 89.3 1.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II P-II PF00543.22 gi|154150687|ref|YP_001404305.1| - 1.9e-20 73.4 0.2 3.8e-20 72.4 0.2 1.5 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.19 gi|154150688|ref|YP_001404306.1| - 5e-148 493.1 0.3 6.9e-148 492.6 0.3 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|154150689|ref|YP_001404307.1| - 8.7e-135 449.5 0.1 9.9e-135 449.3 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase MFS_MOT1 PF16983.5 gi|154150689|ref|YP_001404307.1| - 0.056 13.9 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Molybdate transporter of MFS superfamily NMT1 PF09084.11 gi|154150689|ref|YP_001404307.1| - 0.12 12.3 0.0 1.4 8.8 0.0 2.1 1 1 1 2 2 2 0 NMT1/THI5 like Oxidored_nitro PF00148.19 gi|154150690|ref|YP_001404308.1| - 1.3e-118 396.2 1.4 1.5e-118 396.0 1.4 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase NAT PF04768.13 gi|154150690|ref|YP_001404308.1| - 0.00077 19.2 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 NAT, N-acetyltransferase, of N-acetylglutamate synthase Oxidored_nitro PF00148.19 gi|154150691|ref|YP_001404309.1| - 1.6e-109 366.3 0.0 1.8e-109 366.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase 2Fe-2S_thioredx PF01257.19 gi|154150692|ref|YP_001404310.1| - 3.6e-08 33.4 0.1 5.3e-08 32.8 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Suc_Fer-like PF06999.12 gi|154150692|ref|YP_001404310.1| - 8.4e-05 22.5 0.0 0.00087 19.2 0.0 1.9 2 0 0 2 2 2 1 Sucrase/ferredoxin-like DUF1636 PF07845.11 gi|154150692|ref|YP_001404310.1| - 0.0003 21.2 0.0 0.00033 21.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1636) AnfO_nitrog PF09582.10 gi|154150693|ref|YP_001404311.1| - 1.6e-60 203.7 0.0 1.8e-60 203.6 0.0 1.0 1 0 0 1 1 1 1 Iron only nitrogenase protein AnfO (AnfO_nitrog) MarC PF01914.17 gi|154150694|ref|YP_001404312.1| - 8.7e-34 116.7 16.5 1.1e-33 116.4 16.5 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Fer4_16 PF13484.6 gi|154150695|ref|YP_001404313.1| - 0.00059 20.7 4.0 0.015 16.2 1.5 2.8 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|154150695|ref|YP_001404313.1| - 0.0018 18.7 3.3 0.04 14.3 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|154150695|ref|YP_001404313.1| - 0.0087 15.8 1.7 0.0087 15.8 1.7 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|154150695|ref|YP_001404313.1| - 0.0099 16.0 5.6 0.01 16.0 0.9 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150695|ref|YP_001404313.1| - 0.014 15.9 2.5 0.014 15.9 2.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|154150695|ref|YP_001404313.1| - 0.03 14.5 1.7 0.03 14.5 1.7 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154150695|ref|YP_001404313.1| - 0.031 14.8 3.7 0.078 13.5 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154150695|ref|YP_001404313.1| - 0.047 13.8 0.5 0.047 13.8 0.5 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|154150695|ref|YP_001404313.1| - 0.079 13.6 8.6 0.31 11.7 2.3 2.7 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154150695|ref|YP_001404313.1| - 0.49 10.6 11.4 0.23 11.6 4.0 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154150695|ref|YP_001404313.1| - 5.4 7.3 8.9 0.64 10.2 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Flavodoxin_1 PF00258.25 gi|154150696|ref|YP_001404314.1| - 2.1e-11 44.2 0.0 6.3e-11 42.7 0.0 1.8 2 0 0 2 2 2 1 Flavodoxin Lactamase_B PF00753.27 gi|154150696|ref|YP_001404314.1| - 3.8e-10 40.1 0.1 6.1e-10 39.4 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily PGM_PMM_II PF02879.16 gi|154150696|ref|YP_001404314.1| - 0.0024 18.5 0.1 0.19 12.3 0.0 2.9 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Lactamase_B_2 PF12706.7 gi|154150696|ref|YP_001404314.1| - 0.0037 16.8 0.0 0.0072 15.9 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PGM_PMM_I PF02878.16 gi|154150696|ref|YP_001404314.1| - 0.005 16.5 0.3 0.031 14.0 0.1 2.2 2 1 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Lactamase_B_6 PF16661.5 gi|154150696|ref|YP_001404314.1| - 0.012 15.0 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain FAD-oxidase_C PF02913.19 gi|154150696|ref|YP_001404314.1| - 0.049 13.3 0.1 0.086 12.5 0.1 1.4 1 0 0 1 1 1 0 FAD linked oxidases, C-terminal domain Glyco_transf_4 PF13439.6 gi|154150696|ref|YP_001404314.1| - 0.12 12.3 0.0 0.71 9.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 V4R PF02830.18 gi|154150697|ref|YP_001404315.1| - 2.2e-19 69.2 0.2 3.6e-19 68.5 0.2 1.4 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.20 gi|154150697|ref|YP_001404315.1| - 3.4e-07 30.0 0.0 7e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|154150697|ref|YP_001404315.1| - 1.4e-05 24.9 0.0 2.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|154150697|ref|YP_001404315.1| - 2.7e-05 24.2 0.0 6.1e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 DprA winged helix domain HTH_IclR PF09339.10 gi|154150697|ref|YP_001404315.1| - 3.1e-05 23.7 0.0 6.7e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|154150697|ref|YP_001404315.1| - 0.00011 22.1 0.0 0.00033 20.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|154150697|ref|YP_001404315.1| - 0.00023 21.0 0.0 0.00037 20.4 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|154150697|ref|YP_001404315.1| - 0.14 12.0 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ATC_hydrolase PF14196.6 gi|154150697|ref|YP_001404315.1| - 0.18 12.6 0.2 0.27 12.0 0.2 1.4 1 1 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Hpr_kinase_C PF07475.12 gi|154150698|ref|YP_001404316.1| - 1.4e-06 27.9 0.0 2.4e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain PEPCK_ATP PF01293.20 gi|154150698|ref|YP_001404316.1| - 7.3e-05 21.6 0.0 0.00016 20.5 0.0 1.5 2 0 0 2 2 2 1 Phosphoenolpyruvate carboxykinase AAA_33 PF13671.6 gi|154150698|ref|YP_001404316.1| - 0.0026 17.9 0.0 0.0082 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF308 PF03729.13 gi|154150699|ref|YP_001404317.1| - 2.7e-18 66.1 48.4 1e-10 41.8 15.5 3.3 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF1980 PF09323.10 gi|154150699|ref|YP_001404317.1| - 0.22 11.4 3.8 0.38 10.6 3.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) ABC_tran PF00005.27 gi|154150700|ref|YP_001404318.1| - 3.4e-23 82.7 0.0 4.8e-23 82.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154150700|ref|YP_001404318.1| - 2.7e-12 47.1 2.9 5.7e-07 29.6 0.5 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|154150700|ref|YP_001404318.1| - 0.00017 21.3 0.0 0.00039 20.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|154150700|ref|YP_001404318.1| - 0.00023 20.7 0.0 0.0013 18.3 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|154150700|ref|YP_001404318.1| - 0.00024 21.6 0.0 0.00045 20.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|154150700|ref|YP_001404318.1| - 0.0013 18.3 0.0 0.0021 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|154150700|ref|YP_001404318.1| - 0.0026 17.7 0.0 0.0045 16.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|154150700|ref|YP_001404318.1| - 0.0036 17.7 0.1 0.025 15.0 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|154150700|ref|YP_001404318.1| - 0.0061 16.3 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF815 PF05673.13 gi|154150700|ref|YP_001404318.1| - 0.0068 15.6 0.0 0.013 14.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|154150700|ref|YP_001404318.1| - 0.0086 16.3 0.0 0.021 15.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|154150700|ref|YP_001404318.1| - 0.009 16.1 0.0 0.018 15.2 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|154150700|ref|YP_001404318.1| - 0.012 15.4 0.0 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Dynamin_N PF00350.23 gi|154150700|ref|YP_001404318.1| - 0.019 15.0 0.0 0.035 14.2 0.0 1.4 1 0 0 1 1 1 0 Dynamin family AAA_28 PF13521.6 gi|154150700|ref|YP_001404318.1| - 0.019 15.2 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|154150700|ref|YP_001404318.1| - 0.056 13.9 0.0 0.14 12.6 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF2813 PF11398.8 gi|154150700|ref|YP_001404318.1| - 0.056 12.7 0.0 0.083 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_7 PF12775.7 gi|154150700|ref|YP_001404318.1| - 0.089 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATP-synt_ab PF00006.25 gi|154150700|ref|YP_001404318.1| - 0.11 12.1 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.17 gi|154150700|ref|YP_001404318.1| - 0.18 11.9 0.0 0.3 11.1 0.0 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_13 PF13166.6 gi|154150700|ref|YP_001404318.1| - 0.19 10.4 0.0 13 4.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|154150700|ref|YP_001404318.1| - 0.2 12.0 0.0 0.33 11.4 0.0 1.3 1 0 0 1 1 1 0 RNA helicase ABC_ATPase PF09818.9 gi|154150700|ref|YP_001404318.1| - 0.21 10.3 0.0 4.1 6.1 0.0 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Nitroreductase PF00881.24 gi|154150701|ref|YP_001404319.1| - 1.2e-25 90.5 0.0 1.5e-25 90.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|154150701|ref|YP_001404319.1| - 0.00056 19.6 0.1 0.017 14.7 0.0 2.2 2 1 0 2 2 2 2 Putative TM nitroreductase STAS PF01740.21 gi|154150702|ref|YP_001404320.1| - 2.1e-17 62.8 0.0 2.4e-17 62.7 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 gi|154150702|ref|YP_001404320.1| - 2.3e-13 50.3 0.0 3.1e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 STAS domain HATPase_c_2 PF13581.6 gi|154150703|ref|YP_001404321.1| - 1.6e-27 96.0 0.0 1.8e-27 95.8 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|154150703|ref|YP_001404321.1| - 0.01 16.3 0.0 0.017 15.6 0.0 1.4 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STAS PF01740.21 gi|154150704|ref|YP_001404322.1| - 2.4e-15 56.2 0.0 4.8e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 gi|154150704|ref|YP_001404322.1| - 3.1e-08 33.8 0.0 6.8e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 STAS domain META PF03724.16 gi|154150705|ref|YP_001404323.1| - 8.3e-08 32.2 0.0 1e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 META domain TRF PF08558.10 gi|154150706|ref|YP_001404324.1| - 0.14 11.8 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Telomere repeat binding factor (TRF) DUF4282 PF14110.6 gi|154150707|ref|YP_001404325.1| - 0.59 10.9 10.2 0.67 10.7 10.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF2208 PF09973.9 gi|154150707|ref|YP_001404325.1| - 0.73 9.4 8.8 0.83 9.2 8.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) Peptidase_A24 PF01478.18 gi|154150707|ref|YP_001404325.1| - 0.79 10.2 8.6 1.1 9.7 8.6 1.3 1 1 0 1 1 1 0 Type IV leader peptidase family DUF872 PF05915.12 gi|154150707|ref|YP_001404325.1| - 1.8 8.7 5.8 2.3 8.4 5.8 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) PrgI PF12666.7 gi|154150707|ref|YP_001404325.1| - 8.1 7.2 9.9 13 6.6 9.9 1.4 1 1 0 1 1 1 0 PrgI family protein DUF308 PF03729.13 gi|154150708|ref|YP_001404326.1| - 0.00025 21.3 37.3 0.028 14.7 10.6 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) SLATT_3 PF18184.1 gi|154150708|ref|YP_001404326.1| - 1.3 9.2 2.6 1.4 9.1 0.3 2.1 1 1 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 DUF2070 PF09843.9 gi|154150708|ref|YP_001404326.1| - 4.2 5.6 20.3 4.9 5.3 20.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4203 PF13886.6 gi|154150708|ref|YP_001404326.1| - 9 5.9 34.2 1.1e+02 2.4 34.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) FAD_binding_3 PF01494.19 gi|154150709|ref|YP_001404327.1| - 5.1e-14 52.3 1.4 2e-10 40.5 0.6 2.6 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|154150709|ref|YP_001404327.1| - 4.7e-13 49.0 0.2 4.9e-06 25.8 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|154150709|ref|YP_001404327.1| - 4.8e-07 29.5 1.6 4.8e-07 29.5 1.6 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|154150709|ref|YP_001404327.1| - 1.1e-06 28.4 6.7 0.0015 18.2 0.1 2.4 2 1 1 3 3 3 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|154150709|ref|YP_001404327.1| - 2.2e-06 26.8 0.4 0.037 12.9 0.0 2.8 1 1 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|154150709|ref|YP_001404327.1| - 6.2e-06 25.5 1.6 1.2e-05 24.6 1.6 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|154150709|ref|YP_001404327.1| - 7e-06 25.5 0.7 0.00014 21.2 0.7 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|154150709|ref|YP_001404327.1| - 8.7e-05 21.4 0.1 0.00021 20.1 0.3 1.5 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|154150709|ref|YP_001404327.1| - 0.00025 21.2 0.5 0.00069 19.8 0.5 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|154150709|ref|YP_001404327.1| - 0.00046 19.5 0.1 0.00079 18.7 0.1 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|154150709|ref|YP_001404327.1| - 0.0016 17.6 1.1 0.0027 16.8 1.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|154150709|ref|YP_001404327.1| - 0.063 12.5 0.6 0.092 12.0 0.6 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ABC-3 PF00950.17 gi|154150710|ref|YP_001404328.1| - 2.5e-55 187.8 33.4 2.9e-55 187.6 33.4 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|154150710|ref|YP_001404328.1| - 3.9e-07 29.4 38.5 7.7e-07 28.4 38.5 1.5 1 1 0 1 1 1 1 FecCD transport family DUF2370 PF10176.9 gi|154150710|ref|YP_001404328.1| - 0.46 10.1 1.9 1.2 8.7 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2370) PDGLE PF13190.6 gi|154150710|ref|YP_001404328.1| - 0.63 10.0 0.0 0.63 10.0 0.0 3.6 4 1 0 4 4 4 0 PDGLE domain Arv1 PF04161.13 gi|154150710|ref|YP_001404328.1| - 0.8 9.8 4.7 0.71 10.0 1.8 2.1 2 0 0 2 2 2 0 Arv1-like family ABC_tran PF00005.27 gi|154150711|ref|YP_001404329.1| - 2.6e-29 102.5 0.0 3.7e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154150711|ref|YP_001404329.1| - 2.5e-09 37.4 4.4 6.6e-07 29.4 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|154150711|ref|YP_001404329.1| - 1.8e-05 24.3 0.0 0.0068 15.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|154150711|ref|YP_001404329.1| - 0.00048 20.7 0.0 0.00077 20.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|154150711|ref|YP_001404329.1| - 0.00075 19.8 0.3 0.0052 17.1 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|154150711|ref|YP_001404329.1| - 0.001 18.8 0.0 0.0023 17.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|154150711|ref|YP_001404329.1| - 0.0062 16.7 0.0 0.19 12.0 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|154150711|ref|YP_001404329.1| - 0.0096 16.3 0.0 0.014 15.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|154150711|ref|YP_001404329.1| - 0.011 15.4 0.1 0.027 14.2 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain SRPRB PF09439.10 gi|154150711|ref|YP_001404329.1| - 0.032 13.7 0.1 0.19 11.1 0.0 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PhoH PF02562.16 gi|154150711|ref|YP_001404329.1| - 0.059 12.8 0.0 0.095 12.1 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein MMR_HSR1 PF01926.23 gi|154150711|ref|YP_001404329.1| - 0.06 13.4 0.1 0.14 12.3 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|154150711|ref|YP_001404329.1| - 0.065 13.1 0.0 0.42 10.5 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase IstB_IS21 PF01695.17 gi|154150711|ref|YP_001404329.1| - 0.066 12.9 0.1 0.4 10.4 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF3584 PF12128.8 gi|154150711|ref|YP_001404329.1| - 0.081 10.4 0.0 0.1 10.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA PF00004.29 gi|154150711|ref|YP_001404329.1| - 0.082 13.3 0.0 1.1 9.7 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|154150711|ref|YP_001404329.1| - 0.096 12.8 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|154150711|ref|YP_001404329.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|154150711|ref|YP_001404329.1| - 0.14 10.8 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|154150711|ref|YP_001404329.1| - 0.14 12.7 0.0 0.22 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|154150711|ref|YP_001404329.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|154150711|ref|YP_001404329.1| - 0.17 11.1 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain ZnuA PF01297.17 gi|154150712|ref|YP_001404330.1| - 4.4e-44 150.8 0.7 5.1e-44 150.6 0.7 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic PucR PF07905.11 gi|154150712|ref|YP_001404330.1| - 0.14 12.4 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family Fe_dep_repr_C PF02742.15 gi|154150713|ref|YP_001404331.1| - 3.5e-12 46.2 0.1 5.7e-12 45.5 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|154150713|ref|YP_001404331.1| - 4.5e-09 36.4 0.0 6e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|154150713|ref|YP_001404331.1| - 0.0028 17.5 0.0 0.0056 16.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|154150713|ref|YP_001404331.1| - 0.0031 17.4 0.0 0.0066 16.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|154150713|ref|YP_001404331.1| - 0.0036 17.2 0.0 0.0075 16.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|154150713|ref|YP_001404331.1| - 0.019 14.5 0.0 0.039 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_4 PF13613.6 gi|154150713|ref|YP_001404331.1| - 0.024 14.4 0.0 0.069 12.9 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease HTH_11 PF08279.12 gi|154150713|ref|YP_001404331.1| - 0.03 14.3 0.0 0.18 11.8 0.0 2.0 1 1 1 2 2 2 0 HTH domain Rrf2 PF02082.20 gi|154150713|ref|YP_001404331.1| - 0.038 14.3 0.0 0.056 13.8 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator RuvB_C PF05491.13 gi|154150713|ref|YP_001404331.1| - 0.074 12.9 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain TrmB PF01978.19 gi|154150713|ref|YP_001404331.1| - 0.088 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|154150713|ref|YP_001404331.1| - 0.091 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|154150713|ref|YP_001404331.1| - 0.18 11.7 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF3566 PF12089.8 gi|154150714|ref|YP_001404332.1| - 3.4e-06 27.4 9.0 0.00071 19.9 2.8 2.2 1 1 1 2 2 2 2 Transmembrane domain of unknown function (DUF3566) PAP_central PF04928.17 gi|154150714|ref|YP_001404332.1| - 0.18 10.8 0.1 0.23 10.4 0.1 1.2 1 0 0 1 1 1 0 Poly(A) polymerase central domain ABC2_membrane_4 PF12730.7 gi|154150714|ref|YP_001404332.1| - 0.58 10.1 8.5 0.7 9.8 8.5 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1440 PF07274.12 gi|154150714|ref|YP_001404332.1| - 1.2 9.5 6.7 0.61 10.4 3.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1440) SNARE_assoc PF09335.11 gi|154150714|ref|YP_001404332.1| - 2.3 8.7 13.3 0.76 10.3 3.2 2.2 2 0 0 2 2 2 0 SNARE associated Golgi protein Caveolin PF01146.17 gi|154150714|ref|YP_001404332.1| - 7.3 6.5 6.3 15 5.5 6.3 1.6 1 1 0 1 1 1 0 Caveolin TPR_1 PF00515.28 gi|154150715|ref|YP_001404333.1| - 0 2033.4 292.2 1.9e-08 33.8 0.2 117.9 119 0 0 119 119 119 113 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154150715|ref|YP_001404333.1| - 0 1924.0 398.1 1.2e-07 31.3 0.2 118.6 120 0 0 120 120 118 116 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154150715|ref|YP_001404333.1| - 0 1524.2 477.8 6.6e-13 49.1 1.0 71.4 33 17 34 78 78 78 76 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154150715|ref|YP_001404333.1| - 0 1430.7 361.6 9.3e-12 44.4 0.4 109.8 22 18 93 115 115 115 97 TPR repeat TPR_8 PF13181.6 gi|154150715|ref|YP_001404333.1| - 0 1288.3 239.7 1.8e-06 27.7 0.0 114.4 117 0 0 117 117 117 85 Tetratricopeptide repeat TPR_17 PF13431.6 gi|154150715|ref|YP_001404333.1| - 0 994.2 208.7 2e-05 24.6 0.2 107.5 113 0 0 113 113 106 62 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154150715|ref|YP_001404333.1| - 2.7e-298 963.2 329.2 1.1e-08 35.5 0.6 63.5 42 14 18 64 64 64 59 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154150715|ref|YP_001404333.1| - 7.4e-296 929.3 437.0 9.1e-06 26.1 0.1 110.9 6 5 107 115 115 114 93 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154150715|ref|YP_001404333.1| - 5.3e-260 840.3 307.8 1.8e-08 34.4 1.4 66.9 21 12 51 76 76 76 66 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154150715|ref|YP_001404333.1| - 9.7e-247 798.0 380.7 1.8e-09 37.8 0.4 71.3 30 16 44 75 75 75 69 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|154150715|ref|YP_001404333.1| - 1e-231 749.9 178.6 1.3e-08 34.9 0.1 48.2 20 12 29 53 53 53 50 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|154150715|ref|YP_001404333.1| - 1.3e-139 446.1 328.5 0.017 15.7 0.0 107.0 118 0 0 118 118 108 24 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154150715|ref|YP_001404333.1| - 3e-135 430.7 278.7 0.074 13.1 0.1 98.4 96 11 10 106 106 103 28 Tetratricopeptide repeat BTAD PF03704.17 gi|154150715|ref|YP_001404333.1| - 6.1e-59 198.6 217.3 6.9e-05 23.3 0.5 43.4 10 10 31 48 48 48 22 Bacterial transcriptional activator domain SRP_TPR_like PF17004.5 gi|154150715|ref|YP_001404333.1| - 5.3e-48 161.9 81.8 0.11 12.5 0.1 37.2 16 10 15 37 37 37 8 Putative TPR-like repeat NARP1 PF12569.8 gi|154150715|ref|YP_001404333.1| - 4.7e-46 157.8 94.4 0.26 10.2 0.0 39.8 14 10 15 38 38 38 10 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|154150715|ref|YP_001404333.1| - 4.3e-42 142.0 168.3 0.006 16.6 0.1 57.7 50 14 20 70 70 62 10 Fis1 C-terminal tetratricopeptide repeat DUF3856 PF12968.7 gi|154150715|ref|YP_001404333.1| - 1.1e-31 109.8 155.7 0.67 10.0 0.0 58.5 23 17 35 65 65 63 3 Domain of Unknown Function (DUF3856) Paf67 PF10255.9 gi|154150715|ref|YP_001404333.1| - 2.1e-29 102.7 63.6 0.006 15.6 0.1 32.2 26 10 10 38 38 38 5 RNA polymerase I-associated factor PAF67 TPR_4 PF07721.14 gi|154150715|ref|YP_001404333.1| - 2.4e-25 86.5 196.7 0.095 13.4 0.1 55.4 63 1 1 64 64 49 4 Tetratricopeptide repeat TPR_20 PF14561.6 gi|154150715|ref|YP_001404333.1| - 2.8e-25 88.5 159.8 1 9.8 0.1 43.8 25 10 22 54 54 52 6 Tetratricopeptide repeat TPR_10 PF13374.6 gi|154150715|ref|YP_001404333.1| - 5.5e-22 76.9 348.1 0.12 12.2 0.3 80.8 94 0 0 94 94 83 12 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 gi|154150715|ref|YP_001404333.1| - 1.1e-16 60.6 32.9 1.3 8.7 0.0 21.6 17 6 7 24 24 24 2 Bacterial type III secretion protein (HrpB1_HrpK) DUF3808 PF10300.9 gi|154150715|ref|YP_001404333.1| - 3.3e-16 59.1 35.7 1.4 7.6 0.0 19.7 11 6 9 22 22 22 2 Protein of unknown function (DUF3808) Coatomer_E PF04733.14 gi|154150715|ref|YP_001404333.1| - 2e-14 53.7 42.5 0.19 11.1 0.2 19.5 19 5 4 23 23 22 5 Coatomer epsilon subunit PPR PF01535.20 gi|154150715|ref|YP_001404333.1| - 8.6e-12 44.5 30.5 1.2e+02 3.3 0.0 26.1 31 0 0 31 31 19 0 PPR repeat TOM20_plant PF06552.12 gi|154150715|ref|YP_001404333.1| - 8.6e-12 45.2 36.3 2.1 8.1 0.0 22.6 27 7 0 27 27 23 2 Plant specific mitochondrial import receptor subunit TOM20 FAT PF02259.23 gi|154150715|ref|YP_001404333.1| - 4e-08 32.9 18.9 11 5.1 0.0 16.1 12 5 4 16 16 15 0 FAT domain DUF1358 PF07096.11 gi|154150715|ref|YP_001404333.1| - 1e-07 31.9 7.3 1.8 8.6 0.0 12.9 13 3 3 16 16 13 1 Protein of unknown function (DUF1358) PPTA PF01239.22 gi|154150715|ref|YP_001404333.1| - 0.00023 20.8 9.1 0.34 10.7 0.1 7.9 9 0 0 9 9 5 1 Protein prenyltransferase alpha subunit repeat APP_E2 PF12925.7 gi|154150715|ref|YP_001404333.1| - 0.00029 20.6 2.6 8.5 6.0 0.0 7.6 11 0 0 11 11 7 0 E2 domain of amyloid precursor protein PknG_TPR PF16918.5 gi|154150715|ref|YP_001404333.1| - 0.00043 19.1 118.2 0.13 11.0 0.1 25.2 15 9 14 30 30 30 7 Protein kinase G tetratricopeptide repeat ChAPs PF09295.10 gi|154150715|ref|YP_001404333.1| - 0.002 17.2 6.9 1.3 8.0 0.0 6.7 8 1 0 9 9 7 1 ChAPs (Chs5p-Arf1p-binding proteins) Alkyl_sulf_dimr PF14863.6 gi|154150715|ref|YP_001404333.1| - 0.026 15.0 49.4 3.7 8.0 0.0 18.0 23 2 1 24 24 15 0 Alkyl sulfatase dimerisation ANAPC5 PF12862.7 gi|154150715|ref|YP_001404333.1| - 0.03 14.4 46.5 0.41 10.7 0.2 19.8 22 2 1 23 23 16 0 Anaphase-promoting complex subunit 5 TPR_3 PF07720.12 gi|154150715|ref|YP_001404333.1| - 0.068 13.2 153.5 3.4 7.7 0.0 42.6 54 0 0 54 54 40 0 Tetratricopeptide repeat Lambda_Kil PF06301.11 gi|154150715|ref|YP_001404333.1| - 0.069 12.8 0.1 83 2.9 0.0 5.8 7 0 0 7 7 5 0 Bacteriophage lambda Kil protein Glyco_hyd_65N_2 PF14498.6 gi|154150715|ref|YP_001404333.1| - 0.21 11.4 5.3 9.6 6.0 0.0 3.8 3 0 0 3 3 3 0 Glycosyl hydrolase family 65, N-terminal domain TPR_15 PF13429.6 gi|154150715|ref|YP_001404333.1| - 0.36 10.0 181.8 0.12 11.6 7.8 28.3 12 10 14 30 30 30 0 Tetratricopeptide repeat DUF2799 PF10973.8 gi|154150715|ref|YP_001404333.1| - 0.44 11.0 2.9 5.9 7.4 0.1 4.5 4 0 0 4 4 2 0 Protein of unknown function (DUF2799) SHNi-TPR PF10516.9 gi|154150715|ref|YP_001404333.1| - 0.9 9.0 72.1 3.2 7.3 0.3 26.0 32 0 0 32 32 29 0 SHNi-TPR YfdX PF10938.8 gi|154150715|ref|YP_001404333.1| - 1.5 8.7 15.3 9.5 6.1 0.1 8.1 6 0 0 6 6 6 0 YfdX protein Band_7 PF01145.25 gi|154150716|ref|YP_001404334.1| - 9.1e-32 110.5 0.9 1.2e-31 110.1 0.9 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family DUF1829 PF08862.10 gi|154150716|ref|YP_001404334.1| - 0.005 17.3 0.0 0.011 16.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF1829 Band_7_1 PF13421.6 gi|154150716|ref|YP_001404334.1| - 0.013 15.2 0.1 0.021 14.5 0.1 1.3 1 0 0 1 1 1 0 SPFH domain-Band 7 family TolB_like PF15869.5 gi|154150717|ref|YP_001404335.1| - 0.057 12.6 0.0 0.073 12.3 0.0 1.1 1 0 0 1 1 1 0 TolB-like 6-blade propeller-like HAD_2 PF13419.6 gi|154150718|ref|YP_001404336.1| - 4.8e-33 114.7 0.0 5.7e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|154150718|ref|YP_001404336.1| - 1.8e-15 57.8 0.0 1e-13 52.1 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|154150718|ref|YP_001404336.1| - 4.1e-10 39.6 0.2 6.6e-09 35.7 0.0 2.8 4 0 0 4 4 4 1 HAD-hyrolase-like HAD PF12710.7 gi|154150718|ref|YP_001404336.1| - 3.8e-06 27.4 0.1 6e-06 26.8 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|154150718|ref|YP_001404336.1| - 0.042 13.9 0.0 0.079 13.1 0.0 1.7 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase PvlArgDC PF01862.16 gi|154150719|ref|YP_001404337.1| - 5.9e-61 205.0 0.0 6.6e-61 204.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Inhibitor_I42 PF09394.10 gi|154150720|ref|YP_001404338.1| - 2.8e-15 56.5 0.1 4.6e-15 55.8 0.1 1.4 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 Lyase_8_C PF02884.17 gi|154150720|ref|YP_001404338.1| - 0.018 15.5 0.1 0.04 14.4 0.0 1.6 2 0 0 2 2 2 0 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SKG6 PF08693.10 gi|154150721|ref|YP_001404339.1| - 0.013 14.8 3.1 0.026 13.9 3.1 1.5 1 0 0 1 1 1 0 Transmembrane alpha-helix domain PEMT PF04191.13 gi|154150722|ref|YP_001404340.1| - 1.8 9.0 8.3 4.9 7.6 0.1 3.0 2 1 1 3 3 3 0 Phospholipid methyltransferase Gram_pos_anchor PF00746.21 gi|154150723|ref|YP_001404341.1| - 0.0035 17.2 0.2 0.0077 16.1 0.2 1.6 1 0 0 1 1 1 1 LPXTG cell wall anchor motif T3SS_needle_F PF09392.10 gi|154150725|ref|YP_001404343.1| - 0.003 17.7 0.1 0.0045 17.2 0.1 1.3 1 0 0 1 1 1 1 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CobS PF02654.15 gi|154150725|ref|YP_001404343.1| - 0.034 14.4 1.1 0.043 14.0 1.1 1.1 1 0 0 1 1 1 0 Cobalamin-5-phosphate synthase YvrJ PF12841.7 gi|154150725|ref|YP_001404343.1| - 0.13 11.8 2.2 0.29 10.7 0.1 2.6 3 0 0 3 3 3 0 YvrJ protein family Proteasome_A_N PF10584.9 gi|154150731|ref|YP_001404349.1| - 0.059 13.1 0.5 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 Proteasome subunit A N-terminal signature HTH_24 PF13412.6 gi|154150732|ref|YP_001404350.1| - 6.8e-18 64.0 0.2 7.3e-08 31.9 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|154150732|ref|YP_001404350.1| - 6.5e-14 51.5 0.0 3e-06 26.9 0.1 2.3 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|154150732|ref|YP_001404350.1| - 1.5e-11 44.0 0.0 6.6e-07 29.1 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|154150732|ref|YP_001404350.1| - 5.6e-11 42.3 0.0 5.5e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|154150732|ref|YP_001404350.1| - 2e-10 40.4 0.3 7.8e-05 22.5 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|154150732|ref|YP_001404350.1| - 8e-08 32.1 0.0 9.9e-05 22.2 0.0 2.3 2 0 0 2 2 2 2 MarR family Sigma70_r4_2 PF08281.12 gi|154150732|ref|YP_001404350.1| - 2.5e-05 23.9 0.0 0.088 12.5 0.0 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_40 PF14493.6 gi|154150732|ref|YP_001404350.1| - 2.9e-05 24.4 0.1 0.065 13.7 0.0 2.4 2 1 0 2 2 2 2 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|154150732|ref|YP_001404350.1| - 5.7e-05 22.9 0.0 0.007 16.2 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|154150732|ref|YP_001404350.1| - 0.00025 20.9 0.1 0.0078 16.1 0.1 2.4 2 0 0 2 2 2 1 HTH domain FaeA PF04703.12 gi|154150732|ref|YP_001404350.1| - 0.00053 20.3 0.0 0.0022 18.3 0.0 1.9 2 0 0 2 2 2 1 FaeA-like protein DUF997 PF06196.12 gi|154150732|ref|YP_001404350.1| - 0.00071 19.5 2.1 0.0015 18.5 2.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF997) Rrf2 PF02082.20 gi|154150732|ref|YP_001404350.1| - 0.0025 18.1 0.0 0.78 10.1 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator TFIIE_alpha PF02002.17 gi|154150732|ref|YP_001404350.1| - 0.0045 16.8 0.0 0.55 10.1 0.0 2.1 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_23 PF13384.6 gi|154150732|ref|YP_001404350.1| - 0.0046 16.7 0.0 0.14 12.0 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain Rio2_N PF09202.11 gi|154150732|ref|YP_001404350.1| - 0.0058 16.8 0.0 0.77 10.0 0.0 2.3 2 0 0 2 2 2 1 Rio2, N-terminal HTH_36 PF13730.6 gi|154150732|ref|YP_001404350.1| - 0.012 15.6 0.0 0.52 10.3 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|154150732|ref|YP_001404350.1| - 0.012 15.4 0.0 0.29 10.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|154150732|ref|YP_001404350.1| - 0.013 15.0 0.0 2.7 7.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|154150732|ref|YP_001404350.1| - 0.015 14.8 0.0 4.1 7.0 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 RP-C PF03428.13 gi|154150732|ref|YP_001404350.1| - 0.02 14.5 0.1 4.4 6.9 0.0 2.1 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_Crp_2 PF13545.6 gi|154150732|ref|YP_001404350.1| - 0.023 14.7 0.0 0.14 12.1 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|154150732|ref|YP_001404350.1| - 0.027 14.5 0.0 1.5 8.9 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.6 gi|154150732|ref|YP_001404350.1| - 0.03 14.4 0.0 4.9 7.4 0.0 2.7 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|154150732|ref|YP_001404350.1| - 0.051 13.4 0.1 13 5.7 0.1 2.5 2 1 0 2 2 2 0 HTH DNA binding domain TrmB PF01978.19 gi|154150732|ref|YP_001404350.1| - 0.069 13.1 0.0 5.1 7.1 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_26 PF13443.6 gi|154150732|ref|YP_001404350.1| - 0.078 13.4 0.0 3 8.3 0.0 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Penicillinase_R PF03965.16 gi|154150732|ref|YP_001404350.1| - 0.14 12.5 0.0 3.5 8.0 0.0 2.1 2 0 0 2 2 2 0 Penicillinase repressor CopK PF11525.8 gi|154150732|ref|YP_001404350.1| - 0.15 11.7 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 Copper resistance protein K zf-ribbon_3 PF13248.6 gi|154150733|ref|YP_001404351.1| - 9.8e-09 34.3 0.8 1.6e-08 33.7 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|154150733|ref|YP_001404351.1| - 3.8e-08 32.8 3.1 5.8e-08 32.2 3.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|154150733|ref|YP_001404351.1| - 5.2e-07 29.6 12.8 0.00015 21.7 2.3 1.5 1 1 1 2 2 2 2 Double zinc ribbon Nudix_N_2 PF14803.6 gi|154150733|ref|YP_001404351.1| - 3.1e-05 23.8 1.6 0.071 13.0 0.1 2.3 2 0 0 2 2 2 2 Nudix N-terminal DUF4013 PF13197.6 gi|154150733|ref|YP_001404351.1| - 0.009 15.9 11.6 0.012 15.4 11.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) zinc_ribbon_15 PF17032.5 gi|154150733|ref|YP_001404351.1| - 0.037 14.8 0.8 0.077 13.8 0.8 1.5 1 0 0 1 1 1 0 zinc-ribbon family SP_C-Propep PF08999.10 gi|154150733|ref|YP_001404351.1| - 0.051 13.3 1.8 0.062 13.1 1.1 1.5 1 1 0 1 1 1 0 Surfactant protein C, N terminal propeptide NinF PF05810.12 gi|154150733|ref|YP_001404351.1| - 0.066 13.1 0.4 0.12 12.3 0.4 1.3 1 0 0 1 1 1 0 NinF protein zinc-ribbon_6 PF10005.9 gi|154150733|ref|YP_001404351.1| - 0.072 13.8 0.3 0.11 13.2 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain C1_1 PF00130.22 gi|154150733|ref|YP_001404351.1| - 0.078 12.9 0.5 0.13 12.1 0.5 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HalOD2 PF18547.1 gi|154150733|ref|YP_001404351.1| - 0.085 12.8 0.8 0.51 10.3 0.1 2.1 1 1 1 2 2 2 0 Halobacterial output domain 2 UPF0547 PF10571.9 gi|154150733|ref|YP_001404351.1| - 0.12 12.5 2.5 0.29 11.2 2.5 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|154150733|ref|YP_001404351.1| - 0.14 12.1 0.6 0.23 11.4 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|154150733|ref|YP_001404351.1| - 0.15 11.6 2.1 0.37 10.3 2.1 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding NOB1_Zn_bind PF08772.11 gi|154150733|ref|YP_001404351.1| - 0.16 12.2 2.9 0.33 11.1 2.9 1.5 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc-ribbons_6 PF07191.12 gi|154150733|ref|YP_001404351.1| - 0.16 12.0 1.3 0.37 10.8 1.3 1.4 1 1 0 1 1 1 0 zinc-ribbons tRNA-synt_1g PF09334.11 gi|154150733|ref|YP_001404351.1| - 0.23 10.2 0.1 0.33 9.7 0.1 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (M) DUF1258 PF06869.12 gi|154150733|ref|YP_001404351.1| - 0.24 10.9 0.4 0.35 10.3 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zf_UBZ PF18439.1 gi|154150733|ref|YP_001404351.1| - 0.27 10.8 2.2 3.4 7.4 0.1 2.3 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|154150733|ref|YP_001404351.1| - 0.31 11.0 3.9 0.59 10.2 0.5 2.2 1 1 1 2 2 2 0 YhfH-like protein DUF983 PF06170.12 gi|154150733|ref|YP_001404351.1| - 0.37 11.2 13.2 0.23 11.9 0.7 3.7 2 1 1 3 3 3 0 Protein of unknown function (DUF983) DUF2321 PF10083.9 gi|154150733|ref|YP_001404351.1| - 0.52 9.9 2.3 8.8 5.9 0.1 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) zf-C4_Topoisom PF01396.19 gi|154150733|ref|YP_001404351.1| - 0.52 10.1 3.6 2.5 8.0 0.3 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.11 gi|154150733|ref|YP_001404351.1| - 0.86 9.3 3.9 9.6 6.0 3.9 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Nop10p PF04135.12 gi|154150733|ref|YP_001404351.1| - 2 8.5 4.4 17 5.5 0.3 2.7 2 1 1 3 3 3 0 Nucleolar RNA-binding protein, Nop10p family DHHC PF01529.20 gi|154150733|ref|YP_001404351.1| - 3 7.9 10.2 1.2 9.2 3.7 2.2 2 0 0 2 2 2 0 DHHC palmitoyltransferase Chordopox_A13L PF05961.11 gi|154150733|ref|YP_001404351.1| - 4.1 7.7 7.4 15 5.9 2.6 2.3 2 0 0 2 2 2 0 Chordopoxvirus A13L protein DUF5409 PF17421.2 gi|154150733|ref|YP_001404351.1| - 7.8 7.3 7.6 1.2 9.9 0.1 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5409) DUF4083 PF13314.6 gi|154150733|ref|YP_001404351.1| - 9.7 6.2 12.5 24 4.9 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) CbiA PF01656.23 gi|154150734|ref|YP_001404352.1| - 1.9e-11 44.1 0.0 3e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|154150734|ref|YP_001404352.1| - 2.8e-11 43.7 0.0 9.1e-11 42.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|154150734|ref|YP_001404352.1| - 3.1e-07 30.1 0.0 3.8e-06 26.5 0.0 2.3 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|154150734|ref|YP_001404352.1| - 1.8e-05 24.1 0.0 2.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase MeaB PF03308.16 gi|154150734|ref|YP_001404352.1| - 0.00031 19.8 0.0 0.00048 19.2 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|154150734|ref|YP_001404352.1| - 0.0006 19.3 0.0 0.035 13.6 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 gi|154150734|ref|YP_001404352.1| - 0.0015 18.3 0.0 0.015 15.1 0.1 2.0 1 1 1 2 2 2 2 AAA domain CLP1_P PF16575.5 gi|154150734|ref|YP_001404352.1| - 0.0024 17.7 0.0 0.011 15.6 0.0 1.9 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MipZ PF09140.11 gi|154150734|ref|YP_001404352.1| - 0.0029 16.9 0.0 1.6 7.9 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ Zeta_toxin PF06414.12 gi|154150734|ref|YP_001404352.1| - 0.0036 16.6 0.0 0.0064 15.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|154150734|ref|YP_001404352.1| - 0.007 16.8 0.0 0.0099 16.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain ParA PF10609.9 gi|154150734|ref|YP_001404352.1| - 0.015 14.8 0.0 0.031 13.7 0.0 1.5 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_25 PF13481.6 gi|154150734|ref|YP_001404352.1| - 0.026 14.1 0.0 0.066 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|154150734|ref|YP_001404352.1| - 0.039 13.1 0.0 0.065 12.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|154150734|ref|YP_001404352.1| - 0.048 14.2 0.0 0.075 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|154150734|ref|YP_001404352.1| - 0.074 12.7 0.0 0.3 10.8 0.0 2.0 2 1 1 3 3 3 0 Thymidylate kinase AAA_30 PF13604.6 gi|154150734|ref|YP_001404352.1| - 0.079 12.7 0.0 0.16 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AhpC-TSA_2 PF13911.6 gi|154150734|ref|YP_001404352.1| - 0.12 12.5 0.0 0.16 12.1 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme APS_kinase PF01583.20 gi|154150734|ref|YP_001404352.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase KAP_NTPase PF07693.14 gi|154150734|ref|YP_001404352.1| - 0.25 10.5 0.0 0.25 10.5 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Pox_A32 PF04665.12 gi|154150734|ref|YP_001404352.1| - 0.26 10.7 0.0 1.8 7.9 0.0 1.9 2 0 0 2 2 2 0 Poxvirus A32 protein RACo_C_ter PF14574.6 gi|154150736|ref|YP_001404354.1| - 1.1e-97 326.2 2.7 2.1e-97 325.2 0.3 2.0 2 0 0 2 2 2 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|154150736|ref|YP_001404354.1| - 1.8e-56 190.3 1.2 2.6e-56 189.8 0.3 1.7 2 0 0 2 2 2 1 RACo middle region RACo_linker PF17650.1 gi|154150736|ref|YP_001404354.1| - 1.1e-20 73.3 0.0 2.3e-20 72.2 0.0 1.6 1 0 0 1 1 1 1 RACo linker region Fer2 PF00111.27 gi|154150736|ref|YP_001404354.1| - 1.1e-11 44.5 0.3 3.7e-11 42.8 0.3 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain BcrAD_BadFG PF01869.20 gi|154150736|ref|YP_001404354.1| - 0.00011 21.7 0.2 0.00077 19.0 0.1 2.1 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Fer2_4 PF13510.6 gi|154150736|ref|YP_001404354.1| - 0.0038 17.3 0.6 0.013 15.5 0.6 1.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF5363 PF17320.2 gi|154150736|ref|YP_001404354.1| - 0.068 13.0 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5363) DHODB_Fe-S_bind PF10418.9 gi|154150736|ref|YP_001404354.1| - 0.25 11.2 8.1 2 8.3 2.2 2.7 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CdhD PF03599.16 gi|154150737|ref|YP_001404355.1| - 1.7e-93 313.4 0.0 2.1e-93 313.1 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|154150737|ref|YP_001404355.1| - 1.5e-12 46.9 2.8 1.5e-12 46.9 2.8 2.3 2 0 0 2 2 2 1 Putative Fe-S cluster YhfH PF14149.6 gi|154150737|ref|YP_001404355.1| - 0.0041 17.1 0.1 0.009 16.0 0.1 1.6 1 0 0 1 1 1 1 YhfH-like protein CdhD PF03599.16 gi|154150738|ref|YP_001404356.1| - 9.8e-38 129.9 0.0 1.1e-37 129.6 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Pterin_bind PF00809.22 gi|154150738|ref|YP_001404356.1| - 0.024 14.3 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 Pterin binding enzyme CdhC PF03598.15 gi|154150739|ref|YP_001404357.1| - 1.4e-65 219.9 0.0 2.2e-65 219.3 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CODH_A_N PF18537.1 gi|154150739|ref|YP_001404357.1| - 0.00034 20.6 0.1 0.003 17.5 0.0 2.5 3 0 0 3 3 3 1 Carbon monoxide dehydrogenase subunit alpha N-terminal domain PEGA PF08308.11 gi|154150740|ref|YP_001404358.1| - 3.3e-17 62.1 6.9 5.8e-17 61.4 0.3 3.4 4 0 0 4 4 4 1 PEGA domain FlgD_ig PF13860.6 gi|154150740|ref|YP_001404358.1| - 2.3e-06 27.3 7.0 0.0075 16.1 0.1 4.0 4 1 1 5 5 5 2 FlgD Ig-like domain CarboxypepD_reg PF13620.6 gi|154150740|ref|YP_001404358.1| - 0.00071 19.8 13.5 0.051 13.8 0.0 4.9 3 2 0 4 4 4 2 Carboxypeptidase regulatory-like domain Y_Y_Y PF07495.13 gi|154150740|ref|YP_001404358.1| - 0.0085 16.0 0.8 0.15 12.0 0.4 2.5 2 1 0 2 2 2 1 Y_Y_Y domain DUF2012 PF09430.10 gi|154150740|ref|YP_001404358.1| - 0.045 13.9 0.1 9.6 6.3 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2012) Lactamase_B PF00753.27 gi|154150741|ref|YP_001404359.1| - 1.9e-11 44.4 0.8 2.5e-10 40.7 0.5 2.8 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily ACT PF01842.25 gi|154150741|ref|YP_001404359.1| - 5.8e-05 22.8 0.0 0.0028 17.4 0.0 2.6 2 0 0 2 2 2 1 ACT domain Thr_dehydrat_C PF00585.18 gi|154150741|ref|YP_001404359.1| - 0.0032 17.2 0.0 0.58 10.0 0.0 2.4 1 1 1 2 2 2 2 C-terminal regulatory domain of Threonine dehydratase Lactamase_B_2 PF12706.7 gi|154150741|ref|YP_001404359.1| - 0.18 11.3 0.0 0.4 10.2 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain SIS PF01380.22 gi|154150742|ref|YP_001404360.1| - 3.3e-16 59.3 0.1 5.3e-16 58.7 0.1 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|154150742|ref|YP_001404360.1| - 3.7e-07 30.3 2.4 0.00047 20.2 0.1 2.9 2 1 1 3 3 3 2 SIS domain Aminotran_1_2 PF00155.21 gi|154150743|ref|YP_001404361.1| - 4.9e-63 213.5 0.0 5.5e-63 213.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|154150743|ref|YP_001404361.1| - 4.1e-06 26.4 0.1 6.3e-06 25.7 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|154150743|ref|YP_001404361.1| - 8e-05 21.8 0.0 0.00011 21.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|154150743|ref|YP_001404361.1| - 0.0097 15.2 0.2 0.015 14.6 0.2 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|154150743|ref|YP_001404361.1| - 0.047 12.2 0.0 0.069 11.7 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Peptidase_M42 PF05343.14 gi|154150744|ref|YP_001404362.1| - 1.1e-106 356.1 1.5 1.3e-106 355.9 1.5 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|154150744|ref|YP_001404362.1| - 2.2e-09 37.3 0.0 3.6e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|154150744|ref|YP_001404362.1| - 2.7e-06 27.2 0.1 0.00039 20.2 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M18 PF02127.15 gi|154150744|ref|YP_001404362.1| - 0.0048 15.7 0.1 0.0079 15.0 0.1 1.4 1 1 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) NDUFV3 PF15880.5 gi|154150745|ref|YP_001404363.1| - 0.7 10.0 5.4 0.1 12.7 1.2 1.8 2 0 0 2 2 2 0 NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial ILVD_EDD PF00920.21 gi|154150746|ref|YP_001404364.1| - 1.6e-213 710.1 4.7 1.8e-213 709.9 4.7 1.0 1 0 0 1 1 1 1 Dehydratase family DUF4013 PF13197.6 gi|154150747|ref|YP_001404365.1| - 1.5e-34 119.3 29.2 1.5e-34 119.3 29.2 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Poxvirus_B22R_C PF13168.6 gi|154150747|ref|YP_001404365.1| - 0.22 11.0 2.8 0.44 10.0 2.8 1.5 1 0 0 1 1 1 0 Poxvirus B22R protein C-terminal DUF973 PF06157.11 gi|154150747|ref|YP_001404365.1| - 4.6 6.2 28.5 0.43 9.6 24.2 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF973) AICARFT_IMPCHas PF01808.18 gi|154150748|ref|YP_001404366.1| - 4.8e-108 361.1 0.2 5.8e-108 360.8 0.2 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 gi|154150748|ref|YP_001404366.1| - 2.1e-20 72.7 0.0 4.1e-20 71.8 0.0 1.5 1 0 0 1 1 1 1 MGS-like domain BING4CT PF08149.11 gi|154150748|ref|YP_001404366.1| - 0.12 12.2 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 BING4CT (NUC141) domain GrpE PF01025.19 gi|154150749|ref|YP_001404367.1| - 2e-42 144.7 0.0 2.3e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 GrpE Nup54 PF13874.6 gi|154150749|ref|YP_001404367.1| - 0.0069 16.5 0.2 0.01 16.0 0.2 1.2 1 0 0 1 1 1 1 Nucleoporin complex subunit 54 HSP70 PF00012.20 gi|154150750|ref|YP_001404368.1| - 2.8e-239 795.3 15.2 1.5e-236 786.3 15.2 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|154150750|ref|YP_001404368.1| - 1.8e-19 69.8 1.3 5.5e-19 68.2 1.3 1.8 1 1 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.16 gi|154150750|ref|YP_001404368.1| - 0.0022 17.7 0.1 0.013 15.2 0.0 2.1 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain Pox_VLTF3 PF04947.14 gi|154150750|ref|YP_001404368.1| - 0.034 13.9 0.2 0.12 12.1 0.2 1.9 1 1 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like DUF1667 PF07892.11 gi|154150750|ref|YP_001404368.1| - 0.035 14.2 2.2 1.4 9.1 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1667) POTRA PF07244.15 gi|154150750|ref|YP_001404368.1| - 0.065 13.8 1.6 2.9 8.6 0.2 3.7 3 0 0 3 3 3 0 Surface antigen variable number repeat HBS1_N PF08938.10 gi|154150750|ref|YP_001404368.1| - 0.09 13.1 5.4 0.18 12.1 1.8 2.7 1 1 1 2 2 2 0 HBS1 N-terminus FtsA PF14450.6 gi|154150750|ref|YP_001404368.1| - 0.38 11.2 6.4 6.4 7.3 0.0 3.6 3 2 0 3 3 3 0 Cell division protein FtsA DnaJ_C PF01556.18 gi|154150751|ref|YP_001404369.1| - 2.9e-33 115.0 0.0 4e-33 114.6 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|154150751|ref|YP_001404369.1| - 4.5e-27 93.9 1.4 9.3e-27 92.9 1.4 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|154150751|ref|YP_001404369.1| - 2.7e-12 46.8 16.8 5.5e-12 45.9 16.8 1.5 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|154150751|ref|YP_001404369.1| - 0.0085 16.0 17.4 0.074 13.0 5.1 3.1 1 1 3 4 4 4 4 Tryptophan RNA-binding attenuator protein inhibitory protein zf-nanos PF05741.13 gi|154150751|ref|YP_001404369.1| - 0.4 10.9 4.4 0.82 9.9 0.4 2.5 1 1 0 2 2 2 0 Nanos RNA binding domain Prim_Zn_Ribbon PF08273.12 gi|154150751|ref|YP_001404369.1| - 0.78 10.1 19.7 9.1 6.7 0.1 4.0 3 1 0 3 3 3 0 Zinc-binding domain of primase-helicase HypA PF01155.19 gi|154150751|ref|YP_001404369.1| - 0.84 9.7 9.4 0.5 10.4 1.7 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|154150751|ref|YP_001404369.1| - 2.3 8.2 9.4 0.056 13.4 1.8 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|154150751|ref|YP_001404369.1| - 2.4 8.3 11.5 0.31 11.1 2.6 2.2 1 1 1 2 2 2 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|154150751|ref|YP_001404369.1| - 2.9 8.4 12.3 2.3 8.6 5.2 2.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar FdhE PF04216.12 gi|154150751|ref|YP_001404369.1| - 6.9 6.5 8.1 10 5.9 4.1 2.1 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation STT3 PF02516.14 gi|154150752|ref|YP_001404370.1| - 1.1e-16 60.9 44.0 9.3e-16 57.8 44.0 2.8 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|154150752|ref|YP_001404370.1| - 4.5e-13 49.3 0.4 1.4e-12 47.7 0.4 1.9 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain NADHdh-2_N PF12155.8 gi|154150752|ref|YP_001404370.1| - 0.027 14.8 0.4 0.13 12.7 0.4 2.2 1 0 0 1 1 1 0 NADH dehydrogenase subunit 2 N-terminal DUF4179 PF13786.6 gi|154150752|ref|YP_001404370.1| - 8.1 7.0 7.8 2.8 8.5 0.1 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) UPF0020 PF01170.18 gi|154150753|ref|YP_001404371.1| - 2.5e-26 92.6 0.0 4.2e-25 88.6 0.1 2.5 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|154150753|ref|YP_001404371.1| - 4.8e-07 30.3 0.0 1.3e-06 28.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|154150753|ref|YP_001404371.1| - 4.9e-07 29.7 0.0 1.6e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 DNA methylase Methyltransf_25 PF13649.6 gi|154150753|ref|YP_001404371.1| - 2.4e-06 28.2 0.0 6.1e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154150753|ref|YP_001404371.1| - 6.3e-06 26.1 0.0 1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|154150753|ref|YP_001404371.1| - 6.4e-05 22.5 0.1 0.0027 17.2 0.0 2.1 1 1 1 2 2 2 1 RRNA methyltransferase AviRa N6_Mtase PF02384.16 gi|154150753|ref|YP_001404371.1| - 0.0065 15.8 0.0 0.22 10.8 0.0 2.1 1 1 0 1 1 1 1 N-6 DNA Methylase Ubie_methyltran PF01209.18 gi|154150753|ref|YP_001404371.1| - 0.053 12.8 0.0 0.099 12.0 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|154150753|ref|YP_001404371.1| - 0.12 12.2 0.0 0.39 10.5 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain TPR_11 PF13414.6 gi|154150754|ref|YP_001404372.1| - 1.6e-22 78.9 13.7 5.9e-09 35.5 0.6 5.2 4 2 2 6 6 6 4 TPR repeat TPR_17 PF13431.6 gi|154150754|ref|YP_001404372.1| - 4.7e-17 61.1 9.7 4.9e-05 23.4 0.0 5.4 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154150754|ref|YP_001404372.1| - 1.4e-16 59.2 4.6 2.9e-07 30.1 0.3 5.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|154150754|ref|YP_001404372.1| - 1.1e-14 53.5 13.0 1.5e-06 27.8 0.2 6.0 6 1 1 7 7 7 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154150754|ref|YP_001404372.1| - 3e-14 52.5 3.0 1e-06 29.0 0.6 4.7 2 2 2 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154150754|ref|YP_001404372.1| - 1.1e-12 48.4 12.6 1.3e-08 35.3 1.9 4.5 3 2 2 5 5 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154150754|ref|YP_001404372.1| - 4e-11 42.9 0.0 0.042 14.0 0.1 3.6 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154150754|ref|YP_001404372.1| - 5.5e-11 41.8 7.4 0.0068 16.5 0.1 5.0 4 1 0 4 4 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154150754|ref|YP_001404372.1| - 4.2e-10 40.0 6.5 0.00011 22.7 0.2 3.7 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154150754|ref|YP_001404372.1| - 3.4e-05 24.0 10.1 0.18 12.1 1.2 3.9 3 2 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|154150754|ref|YP_001404372.1| - 9.6e-05 22.8 10.4 0.035 14.7 0.2 4.3 4 1 0 4 4 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154150754|ref|YP_001404372.1| - 0.00017 21.4 1.3 0.032 14.2 0.1 2.9 2 0 0 2 2 2 1 Tetratricopeptide repeat PPTA PF01239.22 gi|154150754|ref|YP_001404372.1| - 0.0052 16.5 0.5 19 5.1 0.0 3.4 3 0 0 3 3 3 0 Protein prenyltransferase alpha subunit repeat FAT PF02259.23 gi|154150754|ref|YP_001404372.1| - 0.013 14.7 2.1 2.1 7.4 0.3 2.1 1 1 1 2 2 2 0 FAT domain MIT PF04212.18 gi|154150754|ref|YP_001404372.1| - 0.038 14.0 1.3 0.58 10.3 0.3 2.5 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain TPR_10 PF13374.6 gi|154150754|ref|YP_001404372.1| - 7.4 6.6 7.8 3 7.9 0.2 3.5 4 1 0 4 4 3 0 Tetratricopeptide repeat 2_5_RNA_ligase2 PF13563.6 gi|154150755|ref|YP_001404373.1| - 3.7e-09 36.7 0.0 6.3e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily Metallophos_2 PF12850.7 gi|154150755|ref|YP_001404373.1| - 3.3e-05 24.2 0.0 6.1e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|154150755|ref|YP_001404373.1| - 0.00056 20.5 0.1 0.0011 19.5 0.1 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Pyridox_ox_2 PF12900.7 gi|154150756|ref|YP_001404374.1| - 1.2e-24 86.9 0.0 1.4e-24 86.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|154150756|ref|YP_001404374.1| - 0.0033 17.6 0.0 0.0049 17.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Thioredox_DsbH PF03190.15 gi|154150757|ref|YP_001404375.1| - 8.4e-76 253.5 0.0 1.3e-75 252.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|154150757|ref|YP_001404375.1| - 8e-09 35.6 0.0 1.5e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|154150757|ref|YP_001404375.1| - 5.3e-06 25.9 0.8 0.013 14.8 0.1 2.2 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.13 gi|154150757|ref|YP_001404375.1| - 0.00081 18.6 0.0 0.49 9.4 0.0 2.5 2 0 0 2 2 2 2 Glycosyl Hydrolase Family 88 DUF3267 PF11667.8 gi|154150758|ref|YP_001404376.1| - 3.8e-05 23.9 8.6 3.8e-05 23.9 8.6 3.4 2 1 1 3 3 3 1 Putative zincin peptidase Peptidase_M50B PF13398.6 gi|154150758|ref|YP_001404376.1| - 0.51 9.9 22.7 0.022 14.4 12.8 2.8 1 1 1 2 2 2 0 Peptidase M50B-like MutS_V PF00488.21 gi|154150759|ref|YP_001404377.1| - 8.9e-80 267.2 0.5 2.4e-79 265.7 0.5 1.7 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|154150759|ref|YP_001404377.1| - 1.8e-43 149.0 0.1 2.8e-43 148.4 0.1 1.3 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|154150759|ref|YP_001404377.1| - 4.5e-41 139.6 0.0 1.5e-40 138.0 0.0 1.9 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.18 gi|154150759|ref|YP_001404377.1| - 8.2e-25 87.0 0.0 1.7e-24 86.0 0.0 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|154150759|ref|YP_001404377.1| - 7.2e-24 84.6 0.0 1.5e-23 83.6 0.0 1.5 1 0 0 1 1 1 1 MutS domain II AAA_27 PF13514.6 gi|154150759|ref|YP_001404377.1| - 0.014 15.0 0.0 0.031 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|154150759|ref|YP_001404377.1| - 0.034 14.2 0.1 0.21 11.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|154150759|ref|YP_001404377.1| - 0.18 12.3 0.0 0.43 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|154150759|ref|YP_001404377.1| - 0.19 11.5 0.1 0.8 9.5 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain DNA_mis_repair PF01119.19 gi|154150760|ref|YP_001404378.1| - 1.3e-35 121.6 0.0 2.1e-35 121.0 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.11 gi|154150760|ref|YP_001404378.1| - 1.1e-34 119.4 0.0 1.7e-34 118.7 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.6 gi|154150760|ref|YP_001404378.1| - 1.8e-11 44.0 0.0 2.9e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|154150760|ref|YP_001404378.1| - 1.3e-06 28.9 0.1 2.6e-06 27.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CorA PF01544.18 gi|154150761|ref|YP_001404379.1| - 4e-48 164.2 0.1 5.6e-48 163.7 0.1 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Ion_trans PF00520.31 gi|154150761|ref|YP_001404379.1| - 9.5e-09 34.8 4.3 2.4e-08 33.5 3.3 2.0 2 0 0 2 2 2 1 Ion transport protein AAA_22 PF13401.6 gi|154150761|ref|YP_001404379.1| - 0.15 12.3 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2207 PF09972.9 gi|154150761|ref|YP_001404379.1| - 0.2 10.4 0.6 1.2 7.8 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) HhH-GPD PF00730.25 gi|154150762|ref|YP_001404380.1| - 1e-12 48.4 0.0 1.7e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|154150762|ref|YP_001404380.1| - 0.069 13.1 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|154150762|ref|YP_001404380.1| - 0.075 13.7 0.0 0.67 10.6 0.0 2.5 1 1 1 2 2 2 0 Helix-hairpin-helix domain Cys_box PF17869.1 gi|154150763|ref|YP_001404381.1| - 0.011 15.9 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 Anosmin cysteine rich domain DUF3899 PF13038.6 gi|154150764|ref|YP_001404382.1| - 0.12 12.9 2.9 6.6 7.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) SdpI PF13630.6 gi|154150764|ref|YP_001404382.1| - 0.24 11.6 2.7 0.33 11.1 2.7 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family Keratin_2_head PF16208.5 gi|154150765|ref|YP_001404383.1| - 0.042 14.0 0.0 0.05 13.7 0.0 1.1 1 0 0 1 1 1 0 Keratin type II head YebO PF13974.6 gi|154150765|ref|YP_001404383.1| - 0.21 11.7 0.3 0.21 11.7 0.3 1.7 1 1 1 2 2 2 0 YebO-like protein DUF2207 PF09972.9 gi|154150765|ref|YP_001404383.1| - 0.4 9.4 2.6 0.46 9.2 2.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) FeoB_associated PF12669.7 gi|154150765|ref|YP_001404383.1| - 1.2 9.6 6.8 4.7 7.7 0.1 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein FeoB_C PF07664.12 gi|154150765|ref|YP_001404383.1| - 2.4 7.9 10.5 3.7 7.3 2.1 3.0 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus TP_methylase PF00590.20 gi|154150766|ref|YP_001404384.1| - 3.4e-26 92.5 0.9 8.4e-25 88.0 0.9 2.5 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.17 gi|154150767|ref|YP_001404385.1| - 4.5e-43 147.4 0.2 5.8e-43 147.0 0.2 1.2 1 0 0 1 1 1 1 CbiD LEA_3 PF03242.13 gi|154150767|ref|YP_001404385.1| - 0.23 12.2 1.0 1.3 9.8 0.1 2.3 1 1 1 2 2 2 0 Late embryogenesis abundant protein CbiC PF02570.15 gi|154150768|ref|YP_001404386.1| - 6.2e-59 199.0 5.1 7.2e-59 198.8 5.1 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.20 gi|154150769|ref|YP_001404387.1| - 3.8e-39 134.8 1.2 4.5e-39 134.6 1.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|154150770|ref|YP_001404388.1| - 5.8e-28 96.7 0.3 1.2e-27 95.7 0.0 1.7 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|154150770|ref|YP_001404388.1| - 7.2e-23 81.4 0.6 1.2e-22 80.6 0.6 1.4 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.20 gi|154150771|ref|YP_001404389.1| - 9.1e-46 156.5 1.6 1.1e-45 156.2 1.6 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|154150771|ref|YP_001404389.1| - 0.0067 16.8 0.0 0.01 16.2 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily TP_methylase PF00590.20 gi|154150772|ref|YP_001404390.1| - 3.8e-33 115.2 0.1 7.3e-33 114.3 0.1 1.5 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_31 PF13847.6 gi|154150773|ref|YP_001404391.1| - 9.9e-15 54.6 0.0 1.2e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154150773|ref|YP_001404391.1| - 2.8e-13 50.4 0.1 4.4e-13 49.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154150773|ref|YP_001404391.1| - 2e-09 38.0 0.0 3e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|154150773|ref|YP_001404391.1| - 8.4e-08 31.9 0.2 1.2e-07 31.4 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|154150773|ref|YP_001404391.1| - 3.1e-07 30.1 0.1 5e-07 29.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|154150773|ref|YP_001404391.1| - 4.9e-07 29.7 0.0 6.6e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|154150773|ref|YP_001404391.1| - 6.9e-07 28.9 0.0 1.2e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_23 PF13489.6 gi|154150773|ref|YP_001404391.1| - 4.7e-06 26.5 0.0 5e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|154150773|ref|YP_001404391.1| - 5.2e-06 26.0 0.0 6.2e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|154150773|ref|YP_001404391.1| - 5.3e-05 23.2 0.0 6.9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|154150773|ref|YP_001404391.1| - 7.5e-05 22.4 0.0 0.0001 22.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.6 gi|154150773|ref|YP_001404391.1| - 9.2e-05 23.4 0.0 0.00012 23.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|154150773|ref|YP_001404391.1| - 0.00012 21.9 0.0 0.00017 21.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|154150773|ref|YP_001404391.1| - 0.00012 22.7 0.0 0.00016 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|154150773|ref|YP_001404391.1| - 0.00027 21.0 0.1 0.00052 20.0 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain TehB PF03848.14 gi|154150773|ref|YP_001404391.1| - 0.00046 19.7 0.0 0.00074 19.0 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Cons_hypoth95 PF03602.15 gi|154150773|ref|YP_001404391.1| - 0.00066 19.4 0.1 0.0013 18.4 0.0 1.3 1 1 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|154150773|ref|YP_001404391.1| - 0.0007 19.3 0.2 0.0013 18.4 0.1 1.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 DOT1 PF08123.13 gi|154150773|ref|YP_001404391.1| - 0.0008 19.0 0.0 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 GidB PF02527.15 gi|154150773|ref|YP_001404391.1| - 0.00082 18.7 0.0 0.00096 18.5 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.20 gi|154150773|ref|YP_001404391.1| - 0.00094 18.6 0.0 0.0013 18.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.17 gi|154150773|ref|YP_001404391.1| - 0.0036 16.5 0.1 0.0042 16.3 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.20 gi|154150773|ref|YP_001404391.1| - 0.01 14.9 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.11 gi|154150773|ref|YP_001404391.1| - 0.019 13.9 0.1 0.026 13.5 0.1 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase NodS PF05401.11 gi|154150773|ref|YP_001404391.1| - 0.02 14.5 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) N6_N4_Mtase PF01555.18 gi|154150773|ref|YP_001404391.1| - 0.024 14.3 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 DNA methylase DUF938 PF06080.12 gi|154150773|ref|YP_001404391.1| - 0.028 14.2 0.1 0.06 13.1 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_16 PF10294.9 gi|154150773|ref|YP_001404391.1| - 0.058 13.1 0.0 0.092 12.5 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase FtsJ PF01728.19 gi|154150773|ref|YP_001404391.1| - 0.066 13.3 0.1 0.098 12.8 0.1 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase ADH_zinc_N PF00107.26 gi|154150773|ref|YP_001404391.1| - 0.16 12.0 1.8 0.29 11.1 1.7 1.7 1 1 0 1 1 1 0 Zinc-binding dehydrogenase MethyltransfD12 PF02086.15 gi|154150773|ref|YP_001404391.1| - 0.17 11.5 0.0 0.23 11.1 0.0 1.1 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase HATPase_c PF02518.26 gi|154150774|ref|YP_001404392.1| - 3.6e-11 43.6 0.0 5.8e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|154150774|ref|YP_001404392.1| - 0.043 13.8 0.3 0.11 12.5 0.3 1.7 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Vpu PF00558.19 gi|154150774|ref|YP_001404392.1| - 0.055 13.2 0.2 0.055 13.2 0.2 2.5 2 1 1 3 3 3 0 Vpu protein HisKA_4TM PF16926.5 gi|154150774|ref|YP_001404392.1| - 0.076 12.6 2.6 0.16 11.5 2.6 1.6 1 1 0 1 1 1 0 Archaeal 4TM region of histidine kinase PsiE PF06146.12 gi|154150775|ref|YP_001404393.1| - 1.7e-15 57.2 6.9 1.7e-15 57.2 6.9 1.6 2 0 0 2 2 2 1 Phosphate-starvation-inducible E RseC_MucC PF04246.12 gi|154150775|ref|YP_001404393.1| - 5 7.1 7.8 3.3 7.7 0.3 2.4 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC TP_methylase PF00590.20 gi|154150776|ref|YP_001404394.1| - 5.2e-50 170.3 0.2 6.2e-50 170.1 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|154150776|ref|YP_001404394.1| - 0.013 15.8 0.0 0.61 10.4 0.0 2.1 1 1 0 1 1 1 0 Radical SAM superfamily Acetate_kinase PF00871.17 gi|154150776|ref|YP_001404394.1| - 0.14 10.8 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 Acetokinase family Porphobil_deam PF01379.20 gi|154150777|ref|YP_001404395.1| - 5.2e-64 215.5 0.0 6.8e-64 215.1 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|154150777|ref|YP_001404395.1| - 5.1e-08 33.2 2.8 5.2e-08 33.2 0.7 1.9 2 0 0 2 2 2 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.21 gi|154150778|ref|YP_001404396.1| - 1.4e-62 211.7 0.0 1.9e-62 211.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|154150778|ref|YP_001404396.1| - 0.026 13.7 0.0 0.035 13.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II ALAD PF00490.21 gi|154150779|ref|YP_001404397.1| - 3.5e-133 443.7 0.0 4.1e-133 443.5 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase NTP_transf_3 PF12804.7 gi|154150779|ref|YP_001404397.1| - 0.0094 16.3 0.1 0.11 12.8 0.0 2.4 1 1 0 2 2 2 1 MobA-like NTP transferase domain Shikimate_DH PF01488.20 gi|154150781|ref|YP_001404399.1| - 3.3e-37 127.6 0.0 7e-37 126.6 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|154150781|ref|YP_001404399.1| - 2.4e-30 105.2 0.0 5.1e-30 104.2 0.0 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|154150781|ref|YP_001404399.1| - 3.4e-16 59.5 1.5 6.3e-16 58.6 0.8 1.9 1 1 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Glu_dehyd_C PF16912.5 gi|154150781|ref|YP_001404399.1| - 0.0024 17.4 0.3 0.0043 16.6 0.3 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus F420_oxidored PF03807.17 gi|154150781|ref|YP_001404399.1| - 0.038 14.6 0.1 0.12 12.9 0.1 1.9 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|154150781|ref|YP_001404399.1| - 0.042 14.3 0.0 0.12 12.8 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding Ntox1 PF15500.6 gi|154150781|ref|YP_001404399.1| - 0.11 12.8 0.7 4.7 7.6 0.2 2.6 2 0 0 2 2 2 0 Putative RNase-like toxin, toxin_1 NAD_binding_7 PF13241.6 gi|154150782|ref|YP_001404400.1| - 1.1e-19 70.8 0.1 2.2e-19 69.8 0.0 1.5 2 0 0 2 2 2 1 Putative NAD(P)-binding CysG_dimeriser PF10414.9 gi|154150782|ref|YP_001404400.1| - 0.0034 17.1 1.7 0.0075 16.0 1.1 1.9 1 1 0 1 1 1 1 Sirohaem synthase dimerisation region Sirohm_synth_M PF14824.6 gi|154150782|ref|YP_001404400.1| - 0.0051 16.2 0.2 0.012 15.1 0.2 1.7 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central FMN_red PF03358.15 gi|154150784|ref|YP_001404402.1| - 2.9e-25 88.8 0.0 3.4e-25 88.6 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154150784|ref|YP_001404402.1| - 3.7e-14 52.9 0.0 4.2e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|154150784|ref|YP_001404402.1| - 0.0011 19.3 0.0 0.0019 18.4 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin domain Ldh_1_N PF00056.23 gi|154150784|ref|YP_001404402.1| - 0.018 15.1 0.0 0.27 11.3 0.0 2.5 1 1 2 3 3 3 0 lactate/malate dehydrogenase, NAD binding domain Response_reg PF00072.24 gi|154150785|ref|YP_001404403.1| - 1.1e-19 70.7 0.1 2.5e-19 69.5 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|154150785|ref|YP_001404403.1| - 1.1e-10 41.6 0.1 2.5e-10 40.5 0.1 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|154150785|ref|YP_001404403.1| - 1.9e-10 41.2 0.0 4e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|154150785|ref|YP_001404403.1| - 1.5e-07 31.4 0.0 3.4e-07 30.2 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|154150785|ref|YP_001404403.1| - 2.6e-06 27.7 0.0 4.2e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|154150785|ref|YP_001404403.1| - 0.017 15.4 0.1 0.058 13.7 0.0 1.9 2 0 0 2 2 2 0 PAS domain SPOB_a PF14689.6 gi|154150785|ref|YP_001404403.1| - 0.11 12.2 0.6 0.3 10.8 0.4 1.8 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.25 gi|154150785|ref|YP_001404403.1| - 0.15 12.1 1.8 0.28 11.2 0.6 1.9 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF3784 PF12650.7 gi|154150785|ref|YP_001404403.1| - 0.16 12.2 0.0 0.36 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) PAS_3 PF08447.12 gi|154150787|ref|YP_001404405.1| - 2.1e-45 152.9 1.0 4.5e-17 62.1 0.0 5.1 5 0 0 5 5 5 4 PAS fold PAS PF00989.25 gi|154150787|ref|YP_001404405.1| - 7.8e-44 148.3 0.0 8.2e-18 64.5 0.0 4.8 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|154150787|ref|YP_001404405.1| - 9.8e-43 144.7 0.0 2.3e-16 59.9 0.0 5.1 4 1 0 4 4 4 4 PAS domain PAS_4 PF08448.10 gi|154150787|ref|YP_001404405.1| - 1e-42 144.9 0.0 7.9e-15 55.1 0.0 4.8 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.7 gi|154150787|ref|YP_001404405.1| - 3.3e-30 103.6 0.0 1.6e-10 40.8 0.0 3.7 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|154150787|ref|YP_001404405.1| - 1.5e-14 54.4 0.0 3.5e-14 53.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|154150787|ref|YP_001404405.1| - 3.7e-12 46.4 0.4 4.6e-05 23.5 0.0 5.0 3 3 1 4 4 3 2 PAS fold EMP24_GP25L PF01105.24 gi|154150787|ref|YP_001404405.1| - 3.7e-07 30.3 5.1 0.0022 18.0 0.5 3.2 3 0 0 3 3 3 2 emp24/gp25L/p24 family/GOLD PAS_10 PF13596.6 gi|154150787|ref|YP_001404405.1| - 3.9e-06 27.4 0.0 0.097 13.3 0.0 3.2 2 1 0 2 2 2 2 PAS domain PAS_11 PF14598.6 gi|154150787|ref|YP_001404405.1| - 4.1e-06 26.9 0.1 0.015 15.4 0.0 4.0 4 1 1 5 5 4 1 PAS domain HATPase_c_2 PF13581.6 gi|154150787|ref|YP_001404405.1| - 0.00044 20.2 0.0 0.00099 19.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Spc24 PF08286.11 gi|154150787|ref|YP_001404405.1| - 0.00085 19.5 13.8 0.1 12.9 1.3 3.5 3 0 0 3 3 3 2 Spc24 subunit of Ndc80 HOOK PF05622.12 gi|154150787|ref|YP_001404405.1| - 0.0022 16.3 10.9 0.0029 15.9 0.6 2.7 3 0 0 3 3 3 2 HOOK protein DUF1664 PF07889.12 gi|154150787|ref|YP_001404405.1| - 0.0044 17.1 7.8 0.16 12.0 0.2 3.5 4 0 0 4 4 4 1 Protein of unknown function (DUF1664) YscO PF07321.12 gi|154150787|ref|YP_001404405.1| - 0.014 15.4 2.0 0.014 15.4 2.0 3.7 4 0 0 4 4 3 0 Type III secretion protein YscO OmpH PF03938.14 gi|154150787|ref|YP_001404405.1| - 0.015 15.6 18.3 0.37 11.1 0.3 3.5 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) Syntaxin-6_N PF09177.11 gi|154150787|ref|YP_001404405.1| - 0.026 15.1 9.1 5.3 7.7 0.1 3.7 3 0 0 3 3 3 0 Syntaxin 6, N-terminal HATPase_c_5 PF14501.6 gi|154150787|ref|YP_001404405.1| - 0.032 14.1 0.0 0.076 12.9 0.0 1.6 1 0 0 1 1 1 0 GHKL domain SPOB_a PF14689.6 gi|154150787|ref|YP_001404405.1| - 0.047 13.4 0.9 0.11 12.2 0.4 1.9 2 0 0 2 2 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain APG6_N PF17675.1 gi|154150787|ref|YP_001404405.1| - 0.065 13.8 23.4 2.1 8.9 5.9 3.5 3 0 0 3 3 3 0 Apg6 coiled-coil region SIMPL PF04402.14 gi|154150787|ref|YP_001404405.1| - 0.081 13.4 0.2 4 7.8 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF541) TonB_C PF03544.14 gi|154150787|ref|YP_001404405.1| - 0.1 13.0 0.3 6.8 7.2 0.0 3.0 3 0 0 3 3 2 0 Gram-negative bacterial TonB protein C-terminal Spc7 PF08317.11 gi|154150787|ref|YP_001404405.1| - 0.13 11.1 18.7 0.65 8.8 0.7 3.4 3 0 0 3 3 3 0 Spc7 kinetochore protein HisKA_4TM PF16926.5 gi|154150787|ref|YP_001404405.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase LMBR1 PF04791.16 gi|154150787|ref|YP_001404405.1| - 0.19 10.6 5.7 1.9 7.3 0.1 2.3 2 1 0 2 2 2 0 LMBR1-like membrane protein YabA PF06156.13 gi|154150787|ref|YP_001404405.1| - 0.2 12.3 14.0 2.7 8.7 1.2 3.5 3 0 0 3 3 3 0 Initiation control protein YabA DUF3552 PF12072.8 gi|154150787|ref|YP_001404405.1| - 0.33 10.3 24.3 0.85 9.0 0.4 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF3552) TMPIT PF07851.13 gi|154150787|ref|YP_001404405.1| - 0.51 9.5 5.4 9.2 5.4 0.2 2.9 3 0 0 3 3 3 0 TMPIT-like protein V_ATPase_I PF01496.19 gi|154150787|ref|YP_001404405.1| - 0.71 7.7 5.0 12 3.7 0.0 2.9 3 0 0 3 3 3 0 V-type ATPase 116kDa subunit family ACP_PD PF04336.12 gi|154150787|ref|YP_001404405.1| - 0.87 10.0 5.4 4 7.9 0.1 3.6 3 0 0 3 3 3 0 Acyl carrier protein phosphodiesterase RP-C_C PF11800.8 gi|154150787|ref|YP_001404405.1| - 0.98 9.5 4.6 16 5.5 0.4 2.5 2 0 0 2 2 2 0 Replication protein C C-terminal region Occludin_ELL PF07303.13 gi|154150787|ref|YP_001404405.1| - 1.4 9.7 8.6 5.5 7.8 0.8 3.4 3 0 0 3 3 3 0 Occludin homology domain CENP-Q PF13094.6 gi|154150787|ref|YP_001404405.1| - 1.4 9.1 17.8 0.29 11.3 0.2 3.8 4 0 0 4 4 3 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF3450 PF11932.8 gi|154150787|ref|YP_001404405.1| - 1.7 7.8 12.9 2.8 7.2 0.4 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) DUF3584 PF12128.8 gi|154150787|ref|YP_001404405.1| - 1.9 5.9 13.2 2 5.8 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3584) HBM PF16591.5 gi|154150787|ref|YP_001404405.1| - 2.3 7.6 12.3 2.2 7.6 1.0 2.7 3 0 0 3 3 3 0 Helical bimodular sensor domain TACC_C PF05010.14 gi|154150787|ref|YP_001404405.1| - 2.9 7.6 16.1 5.6 6.7 1.2 3.4 3 0 0 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal UPF0449 PF15136.6 gi|154150787|ref|YP_001404405.1| - 3.4 8.2 14.5 12 6.4 0.4 4.0 3 2 0 3 3 3 0 Uncharacterised protein family UPF0449 DivIC PF04977.15 gi|154150787|ref|YP_001404405.1| - 4.4 7.1 17.9 0.87 9.4 2.1 3.9 3 0 0 3 3 3 0 Septum formation initiator GIT_CC PF16559.5 gi|154150787|ref|YP_001404405.1| - 6 6.8 9.1 4.5 7.2 0.9 3.8 4 0 0 4 4 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF4201 PF13870.6 gi|154150787|ref|YP_001404405.1| - 6.3 6.5 15.9 2.5 7.8 3.7 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4201) HrpB7 PF09486.10 gi|154150787|ref|YP_001404405.1| - 6.3 7.2 15.9 7.2 7.0 1.0 3.5 3 0 0 3 3 3 0 Bacterial type III secretion protein (HrpB7) Scaffolding_pro PF11418.8 gi|154150787|ref|YP_001404405.1| - 9.8 6.8 7.9 18 6.0 0.4 3.3 3 0 0 3 3 3 0 Phi29 scaffolding protein Response_reg PF00072.24 gi|154150788|ref|YP_001404406.1| - 7.4e-22 77.6 0.0 1.6e-21 76.6 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|154150788|ref|YP_001404406.1| - 2.1e-13 50.4 0.0 4.7e-13 49.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|154150788|ref|YP_001404406.1| - 4.7e-08 32.9 0.0 1.1e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|154150788|ref|YP_001404406.1| - 2.7e-07 30.6 0.0 5.8e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|154150788|ref|YP_001404406.1| - 5.2e-06 26.7 0.0 9.6e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|154150788|ref|YP_001404406.1| - 0.016 15.5 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 PAS fold Response_reg PF00072.24 gi|154150789|ref|YP_001404407.1| - 7e-10 39.1 0.0 8.8e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain 5_nucleotid_C PF02872.18 gi|154150789|ref|YP_001404407.1| - 0.17 12.1 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 5'-nucleotidase, C-terminal domain CheW PF01584.19 gi|154150790|ref|YP_001404408.1| - 2.7e-29 101.6 0.4 3.2e-29 101.3 0.4 1.1 1 0 0 1 1 1 1 CheW-like domain Chordopox_A15 PF05846.12 gi|154150790|ref|YP_001404408.1| - 0.11 12.8 0.1 0.22 11.8 0.1 1.5 1 0 0 1 1 1 0 Chordopoxvirus A15 protein MCPsignal PF00015.21 gi|154150791|ref|YP_001404409.1| - 9.7e-44 149.2 60.6 4.9e-43 146.9 21.8 6.7 3 2 4 7 7 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP_N3 PF18575.1 gi|154150791|ref|YP_001404409.1| - 1.5e-21 75.7 0.4 2.6e-20 71.7 0.4 3.5 1 0 0 1 1 1 1 HAMP N-terminal domain 3 HAMP PF00672.25 gi|154150791|ref|YP_001404409.1| - 1.2e-09 38.4 0.0 21 5.6 0.0 8.8 8 2 0 8 8 7 0 HAMP domain DUF948 PF06103.11 gi|154150791|ref|YP_001404409.1| - 1.1e-08 35.2 56.9 0.14 12.4 1.8 11.9 6 4 2 8 8 8 4 Bacterial protein of unknown function (DUF948) FadA PF09403.10 gi|154150791|ref|YP_001404409.1| - 1.3e-05 25.6 20.7 31 5.1 0.0 9.3 9 1 0 9 9 9 0 Adhesion protein FadA DUF1664 PF07889.12 gi|154150791|ref|YP_001404409.1| - 4.6e-05 23.5 37.1 0.052 13.6 1.7 9.2 8 2 2 10 10 10 1 Protein of unknown function (DUF1664) MRP-S28 PF10213.9 gi|154150791|ref|YP_001404409.1| - 6.8e-05 23.3 11.3 23 5.4 0.1 6.5 6 0 0 6 6 6 0 Mitochondrial ribosomal subunit protein Laminin_I PF06008.14 gi|154150791|ref|YP_001404409.1| - 0.0027 17.5 33.7 0.0031 17.3 3.2 5.1 2 1 1 4 4 4 1 Laminin Domain I IFT57 PF10498.9 gi|154150791|ref|YP_001404409.1| - 0.0042 16.1 13.5 0.01 14.8 4.7 2.9 2 0 0 2 2 2 1 Intra-flagellar transport protein 57 Kre28 PF17097.5 gi|154150791|ref|YP_001404409.1| - 0.0055 15.7 8.8 0.096 11.6 1.5 2.8 2 0 0 2 2 2 2 Spindle pole body component EzrA PF06160.12 gi|154150791|ref|YP_001404409.1| - 0.037 12.2 19.5 0.0029 15.9 12.3 2.7 3 1 0 3 3 3 0 Septation ring formation regulator, EzrA COG2 PF06148.11 gi|154150791|ref|YP_001404409.1| - 0.043 13.9 29.4 1.9 8.6 1.6 8.8 7 2 3 10 10 10 0 COG (conserved oligomeric Golgi) complex component, COG2 DASH_Duo1 PF08651.10 gi|154150791|ref|YP_001404409.1| - 0.051 13.3 14.6 13 5.6 0.8 8.0 8 0 0 8 8 7 0 DASH complex subunit Duo1 REF PF05755.12 gi|154150791|ref|YP_001404409.1| - 0.074 12.9 19.4 38 4.0 2.9 7.9 6 1 0 7 7 7 0 Rubber elongation factor protein (REF) CREPT PF16566.5 gi|154150791|ref|YP_001404409.1| - 0.15 12.2 7.2 14 5.8 0.4 3.8 2 2 1 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour Mce4_CUP1 PF11887.8 gi|154150791|ref|YP_001404409.1| - 0.36 10.2 14.0 1.7 8.0 2.1 3.5 3 1 0 3 3 2 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF1741 PF08427.10 gi|154150791|ref|YP_001404409.1| - 0.87 9.2 4.0 3.2 7.4 4.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1741) Golgin_A5 PF09787.9 gi|154150791|ref|YP_001404409.1| - 0.88 9.0 13.7 3.7 6.9 2.5 2.6 2 0 0 2 2 2 0 Golgin subfamily A member 5 FlgN PF05130.12 gi|154150791|ref|YP_001404409.1| - 1.2 9.7 22.7 4.1 7.9 3.0 3.7 1 1 2 3 3 3 0 FlgN protein Spc7 PF08317.11 gi|154150791|ref|YP_001404409.1| - 1.2 8.0 20.1 3.3 6.5 4.2 3.3 2 1 0 2 2 2 0 Spc7 kinetochore protein DUF2888 PF11135.8 gi|154150791|ref|YP_001404409.1| - 1.2 9.1 7.3 1.1e+02 2.7 0.1 4.9 5 0 0 5 5 5 0 Protein of unknown function (DUF2888) DUF1351 PF07083.11 gi|154150791|ref|YP_001404409.1| - 1.4 8.7 14.6 9.7 5.9 4.0 4.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1351) Nup88 PF10168.9 gi|154150791|ref|YP_001404409.1| - 1.6 6.5 15.5 0.48 8.2 4.7 2.3 2 0 0 2 2 2 0 Nuclear pore component DUF4559 PF15112.6 gi|154150791|ref|YP_001404409.1| - 1.6 8.3 10.7 4.9 6.7 2.9 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) PspA_IM30 PF04012.12 gi|154150791|ref|YP_001404409.1| - 2.6 7.6 29.7 2 8.0 1.9 3.6 2 1 1 3 3 3 0 PspA/IM30 family AIP3 PF03915.13 gi|154150791|ref|YP_001404409.1| - 3.4 6.6 24.1 4.8 6.2 7.1 2.7 1 1 1 2 2 2 0 Actin interacting protein 3 ERM PF00769.19 gi|154150791|ref|YP_001404409.1| - 3.7 7.3 14.2 3.3 7.5 1.4 2.8 2 0 0 2 2 2 0 Ezrin/radixin/moesin family KxDL PF10241.9 gi|154150791|ref|YP_001404409.1| - 4.8 7.5 6.5 26 5.2 0.2 4.4 3 1 0 4 4 3 0 Uncharacterized conserved protein DUF3450 PF11932.8 gi|154150791|ref|YP_001404409.1| - 5.4 6.2 23.4 2.8 7.2 5.2 3.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) LOH1CR12 PF10158.9 gi|154150791|ref|YP_001404409.1| - 5.8 6.9 14.1 18 5.4 0.5 4.3 2 2 1 3 3 3 0 Tumour suppressor protein DUF4618 PF15397.6 gi|154150791|ref|YP_001404409.1| - 6.7 6.0 7.3 4.2 6.7 0.8 3.2 2 2 1 3 3 3 0 Domain of unknown function (DUF4618) TMPIT PF07851.13 gi|154150791|ref|YP_001404409.1| - 6.9 5.8 16.2 3.9 6.6 1.7 3.6 1 1 0 2 2 2 0 TMPIT-like protein Jnk-SapK_ap_N PF09744.9 gi|154150791|ref|YP_001404409.1| - 7.3 6.8 12.4 1.6 9.0 2.3 3.3 2 2 1 3 3 3 0 JNK_SAPK-associated protein-1 Tropomyosin_1 PF12718.7 gi|154150791|ref|YP_001404409.1| - 9.4 6.4 18.7 2.3 8.4 2.7 3.2 2 1 0 2 2 2 0 Tropomyosin like PAS_4 PF08448.10 gi|154150793|ref|YP_001404411.1| - 1.8e-12 47.5 0.0 5e-10 39.6 0.0 2.6 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|154150793|ref|YP_001404411.1| - 1.8e-11 44.5 0.0 3.2e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|154150793|ref|YP_001404411.1| - 6.9e-09 35.9 0.0 7.3e-07 29.4 0.0 3.1 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.7 gi|154150793|ref|YP_001404411.1| - 8e-06 26.1 0.0 0.00061 20.0 0.0 3.1 3 0 0 3 3 3 1 PAS domain HTH_IclR PF09339.10 gi|154150793|ref|YP_001404411.1| - 2.5e-05 24.0 0.0 6.9e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_40 PF14493.6 gi|154150793|ref|YP_001404411.1| - 0.00039 20.8 0.0 0.0023 18.3 0.0 2.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|154150793|ref|YP_001404411.1| - 0.00086 19.3 0.1 0.0021 18.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|154150793|ref|YP_001404411.1| - 0.0047 16.5 0.5 0.017 14.7 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding PAS PF00989.25 gi|154150793|ref|YP_001404411.1| - 0.006 16.6 0.0 0.089 12.8 0.0 2.9 3 1 0 3 3 3 1 PAS fold Rootletin PF15035.6 gi|154150793|ref|YP_001404411.1| - 0.0071 16.4 0.7 0.015 15.3 0.7 1.5 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion SPOB_a PF14689.6 gi|154150793|ref|YP_001404411.1| - 0.0073 16.0 2.6 0.013 15.2 0.7 2.4 2 1 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.6 gi|154150793|ref|YP_001404411.1| - 0.0077 16.2 0.1 0.034 14.1 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain TrmB PF01978.19 gi|154150793|ref|YP_001404411.1| - 0.0097 15.8 0.1 0.055 13.4 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|154150793|ref|YP_001404411.1| - 0.027 14.3 1.9 0.038 13.8 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain CLTH PF10607.9 gi|154150793|ref|YP_001404411.1| - 0.032 14.1 0.2 0.065 13.1 0.2 1.6 1 1 0 1 1 1 0 CTLH/CRA C-terminal to LisH motif domain HATPase_c_3 PF13589.6 gi|154150793|ref|YP_001404411.1| - 0.036 13.9 0.0 0.09 12.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_11 PF08279.12 gi|154150793|ref|YP_001404411.1| - 0.036 14.0 0.0 0.099 12.6 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_17 PF12728.7 gi|154150793|ref|YP_001404411.1| - 0.082 13.1 0.1 0.31 11.2 0.1 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|154150793|ref|YP_001404411.1| - 0.096 12.5 0.2 0.47 10.3 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain DUF977 PF06163.11 gi|154150793|ref|YP_001404411.1| - 0.12 12.3 0.0 0.36 10.8 0.0 1.8 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF977) GIT_CC PF16559.5 gi|154150793|ref|YP_001404411.1| - 0.44 10.5 3.8 6.4 6.7 0.3 2.6 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor OmpH PF03938.14 gi|154150793|ref|YP_001404411.1| - 0.65 10.3 5.8 0.1 12.9 1.2 1.9 2 1 0 2 2 2 0 Outer membrane protein (OmpH-like) Lactamase_B PF00753.27 gi|154150794|ref|YP_001404412.1| - 4.6e-19 69.2 0.8 1.4e-16 61.1 0.8 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|154150794|ref|YP_001404412.1| - 3.1e-05 23.6 0.1 4.5e-05 23.1 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain CheR PF01739.18 gi|154150795|ref|YP_001404413.1| - 8.5e-42 142.8 0.0 9.6e-42 142.7 0.0 1.0 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain Methyltransf_25 PF13649.6 gi|154150795|ref|YP_001404413.1| - 0.079 13.7 0.0 0.26 12.0 0.0 1.8 1 1 1 2 2 2 0 Methyltransferase domain DNA_pol_B PF00136.21 gi|154150796|ref|YP_001404414.1| - 6.6e-14 51.5 0.0 5.3e-08 32.0 0.0 3.0 2 1 1 3 3 3 3 DNA polymerase family B 2_5_RNA_ligase2 PF13563.6 gi|154150798|ref|YP_001404416.1| - 2.5e-17 63.2 0.1 3.6e-17 62.7 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|154150798|ref|YP_001404416.1| - 0.0006 19.9 0.1 0.012 15.8 0.0 2.2 2 0 0 2 2 2 1 LigT like Phosphoesterase SKI PF01202.22 gi|154150799|ref|YP_001404417.1| - 2.7e-33 115.3 0.0 3.1e-33 115.2 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 gi|154150799|ref|YP_001404417.1| - 9.7e-06 26.2 0.2 5.7e-05 23.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|154150799|ref|YP_001404417.1| - 6e-05 23.2 0.0 0.00015 22.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|154150799|ref|YP_001404417.1| - 0.01 15.6 0.1 0.023 14.5 0.1 1.9 1 1 0 1 1 1 0 Cytidylate kinase AAA_17 PF13207.6 gi|154150799|ref|YP_001404417.1| - 0.017 15.5 0.1 0.031 14.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain dNK PF01712.19 gi|154150799|ref|YP_001404417.1| - 0.038 13.9 0.1 6.8 6.5 0.0 2.2 2 0 0 2 2 2 0 Deoxynucleoside kinase Cytidylate_kin2 PF13189.6 gi|154150799|ref|YP_001404417.1| - 0.039 14.1 0.0 0.067 13.3 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase-like family Hydin_ADK PF17213.3 gi|154150799|ref|YP_001404417.1| - 0.05 13.9 0.1 0.081 13.2 0.1 1.3 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain AAA PF00004.29 gi|154150799|ref|YP_001404417.1| - 0.052 14.0 0.3 0.076 13.4 0.3 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|154150799|ref|YP_001404417.1| - 0.053 13.3 0.4 0.095 12.4 0.2 1.5 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain E1-E2_ATPase PF00122.20 gi|154150800|ref|YP_001404418.1| - 2.7e-44 150.9 0.5 2.7e-44 150.9 0.5 3.8 5 0 0 5 5 5 1 E1-E2 ATPase Hydrolase PF00702.26 gi|154150800|ref|YP_001404418.1| - 3.3e-25 89.6 0.8 2.8e-24 86.6 0.7 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|154150800|ref|YP_001404418.1| - 1.5e-10 40.6 0.0 3.3e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|154150800|ref|YP_001404418.1| - 0.0062 16.3 0.1 0.011 15.5 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Nitroreductase PF00881.24 gi|154150801|ref|YP_001404419.1| - 1.2e-28 100.3 0.0 1.4e-28 100.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF4064 PF13273.6 gi|154150803|ref|YP_001404421.1| - 2.4 8.5 9.9 0.36 11.1 0.5 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) PhaG_MnhG_YufB PF03334.14 gi|154150804|ref|YP_001404422.1| - 0.079 13.2 14.9 0.11 12.8 14.9 1.2 1 0 0 1 1 1 0 Na+/H+ antiporter subunit TssN PF17555.2 gi|154150804|ref|YP_001404422.1| - 3.1 7.1 5.6 3.5 6.9 5.6 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN FA_desaturase PF00487.24 gi|154150804|ref|YP_001404422.1| - 5.9 6.7 11.0 8.2 6.2 11.0 1.3 1 1 0 1 1 1 0 Fatty acid desaturase MrpF_PhaF PF04066.13 gi|154150805|ref|YP_001404423.1| - 0.0013 19.1 8.4 0.0013 19.1 8.4 1.6 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) 7TM-7TMR_HD PF07698.11 gi|154150805|ref|YP_001404423.1| - 0.036 13.8 6.2 0.048 13.4 6.2 1.2 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase PAPS_reduct PF01507.19 gi|154150806|ref|YP_001404424.1| - 1.1e-40 139.5 0.0 1.6e-40 139.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|154150806|ref|YP_001404424.1| - 1.5e-14 53.7 0.4 2.7e-14 52.9 0.4 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|154150806|ref|YP_001404424.1| - 0.055 13.7 0.0 0.099 12.9 0.0 1.4 1 0 0 1 1 1 0 UPF0113 PUA domain Synuclein PF01387.17 gi|154150806|ref|YP_001404424.1| - 0.063 13.5 0.2 0.1 12.8 0.2 1.2 1 0 0 1 1 1 0 Synuclein GATase PF00117.28 gi|154150807|ref|YP_001404425.1| - 5.7e-22 78.4 0.0 7.2e-22 78.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|154150807|ref|YP_001404425.1| - 1.9e-05 24.6 0.2 0.0092 15.8 0.0 2.4 3 0 0 3 3 3 2 Peptidase C26 GATase_3 PF07685.14 gi|154150807|ref|YP_001404425.1| - 1.9e-05 24.3 0.1 3e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|154150807|ref|YP_001404425.1| - 0.00023 21.0 0.0 0.0015 18.4 0.0 1.9 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Alpha_GJ PF03229.13 gi|154150808|ref|YP_001404426.1| - 0.3 11.6 7.1 0.12 13.0 4.2 1.8 2 0 0 2 2 2 0 Alphavirus glycoprotein J HTH_20 PF12840.7 gi|154150809|ref|YP_001404427.1| - 2.7e-09 36.9 0.0 4.4e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|154150809|ref|YP_001404427.1| - 4.9e-06 26.3 0.1 8.8e-06 25.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|154150809|ref|YP_001404427.1| - 5.3e-05 23.0 0.1 0.00012 21.9 0.1 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|154150809|ref|YP_001404427.1| - 7.3e-05 22.2 0.1 0.00012 21.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF742 PF05331.11 gi|154150809|ref|YP_001404427.1| - 8.5e-05 22.3 0.1 0.00014 21.7 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_47 PF16221.5 gi|154150809|ref|YP_001404427.1| - 0.0013 18.2 0.2 0.0021 17.6 0.2 1.3 1 0 0 1 1 1 1 winged helix-turn-helix GerE PF00196.19 gi|154150809|ref|YP_001404427.1| - 0.0026 17.2 0.0 0.0048 16.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_IclR PF09339.10 gi|154150809|ref|YP_001404427.1| - 0.0071 16.1 0.1 0.014 15.2 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|154150809|ref|YP_001404427.1| - 0.016 15.1 0.3 0.029 14.4 0.3 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|154150809|ref|YP_001404427.1| - 0.025 14.5 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|154150809|ref|YP_001404427.1| - 0.026 15.0 0.2 0.04 14.4 0.2 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|154150809|ref|YP_001404427.1| - 0.027 14.3 0.1 0.036 13.9 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2250 PF10007.9 gi|154150809|ref|YP_001404427.1| - 0.044 13.9 0.1 0.062 13.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF2513 PF10711.9 gi|154150809|ref|YP_001404427.1| - 0.086 13.1 0.1 0.16 12.2 0.1 1.5 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_9 PF08221.11 gi|154150809|ref|YP_001404427.1| - 0.13 12.4 0.1 0.29 11.3 0.1 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain vATP-synt_E PF01991.18 gi|154150809|ref|YP_001404427.1| - 0.14 11.6 0.1 0.22 10.9 0.1 1.3 1 0 0 1 1 1 0 ATP synthase (E/31 kDa) subunit tRNA-synt_2c PF01411.19 gi|154150810|ref|YP_001404428.1| - 4e-119 398.6 0.0 5e-119 398.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|154150810|ref|YP_001404428.1| - 8.9e-17 61.8 0.1 2.4e-16 60.4 0.1 1.8 2 0 0 2 2 2 1 DHHA1 domain tRNA_SAD PF07973.14 gi|154150810|ref|YP_001404428.1| - 4.5e-13 49.1 1.4 1.1e-12 47.8 1.4 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain MoeA_N PF03453.17 gi|154150812|ref|YP_001404430.1| - 3.4e-39 134.1 4.3 5.2e-39 133.5 4.3 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|154150812|ref|YP_001404430.1| - 6.8e-29 100.4 0.1 1.1e-28 99.7 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|154150812|ref|YP_001404430.1| - 1e-16 60.9 0.1 7.6e-16 58.1 0.0 2.5 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) NAD_binding_10 PF13460.6 gi|154150812|ref|YP_001404430.1| - 0.034 14.0 0.0 0.081 12.8 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H-binding TGT_C1 PF14809.6 gi|154150812|ref|YP_001404430.1| - 0.064 13.6 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 C1 domain of tRNA-guanine transglycosylase dimerisation SWIM PF04434.17 gi|154150813|ref|YP_001404431.1| - 5.2e-06 26.0 0.2 8.8e-06 25.3 0.2 1.4 1 0 0 1 1 1 1 SWIM zinc finger NIF3 PF01784.18 gi|154150814|ref|YP_001404432.1| - 1.5e-41 142.7 0.0 2.2e-41 142.1 0.0 1.2 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) HcyBio PF01837.16 gi|154150815|ref|YP_001404433.1| - 2.3e-144 480.5 0.0 2.3e-144 480.5 0.0 1.5 2 0 0 2 2 2 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|154150815|ref|YP_001404433.1| - 4.4e-19 68.7 1.7 2.3e-08 34.3 0.0 2.5 2 0 0 2 2 2 2 CBS domain Fer4 PF00037.27 gi|154150816|ref|YP_001404434.1| - 1.5e-13 49.9 13.7 3.1e-07 29.9 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|154150816|ref|YP_001404434.1| - 3.3e-10 40.0 20.3 3.6e-07 30.2 11.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154150816|ref|YP_001404434.1| - 4.7e-10 39.1 14.3 6e-06 26.1 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154150816|ref|YP_001404434.1| - 6e-09 36.4 23.1 1.7e-07 31.7 12.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154150816|ref|YP_001404434.1| - 3.6e-08 34.2 10.5 0.0017 19.3 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|154150816|ref|YP_001404434.1| - 4.6e-08 32.7 14.2 0.00016 21.6 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154150816|ref|YP_001404434.1| - 6e-07 29.5 13.4 0.0014 18.8 2.5 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150816|ref|YP_001404434.1| - 9e-07 28.9 13.5 0.001 19.1 2.1 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154150816|ref|YP_001404434.1| - 2.4e-06 28.0 6.0 0.011 16.3 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154150816|ref|YP_001404434.1| - 7e-06 26.2 17.6 0.00069 19.9 2.4 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|154150816|ref|YP_001404434.1| - 2e-05 25.3 4.2 0.015 16.2 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|154150816|ref|YP_001404434.1| - 7.3e-05 22.9 9.2 0.00018 21.6 9.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154150816|ref|YP_001404434.1| - 9.4e-05 22.9 14.9 0.00099 19.6 2.8 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|154150816|ref|YP_001404434.1| - 0.0028 18.1 14.9 0.11 13.0 2.0 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Mut7-C PF01927.16 gi|154150816|ref|YP_001404434.1| - 0.028 14.5 0.3 0.038 14.1 0.3 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain Fer4_15 PF13459.6 gi|154150816|ref|YP_001404434.1| - 0.056 14.2 13.7 1.2 9.9 2.8 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|154150816|ref|YP_001404434.1| - 0.12 13.3 18.8 1.1 10.4 3.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain ApbE PF02424.15 gi|154150817|ref|YP_001404435.1| - 0.00018 21.1 0.8 0.47 9.9 0.0 2.2 2 0 0 2 2 2 2 ApbE family TrmB PF01978.19 gi|154150819|ref|YP_001404437.1| - 0.038 13.9 0.0 0.047 13.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ACP_syn_III_C PF08541.10 gi|154150819|ref|YP_001404437.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Trm56 PF01994.16 gi|154150820|ref|YP_001404438.1| - 1.4e-47 160.5 0.0 1.8e-47 160.2 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 ATP-grasp_3 PF02655.14 gi|154150821|ref|YP_001404439.1| - 9.1e-30 103.8 0.0 1.2e-29 103.5 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|154150821|ref|YP_001404439.1| - 1.1e-07 31.7 0.0 1.9e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 gi|154150821|ref|YP_001404439.1| - 0.0022 17.3 0.0 0.011 15.0 0.0 1.9 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|154150821|ref|YP_001404439.1| - 0.0033 16.9 0.1 0.48 9.9 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain TFIIE_alpha PF02002.17 gi|154150822|ref|YP_001404440.1| - 9.9e-21 73.6 0.9 1.7e-20 72.8 0.3 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|154150822|ref|YP_001404440.1| - 0.0079 15.7 4.2 0.015 14.8 3.8 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding HTH_9 PF08221.11 gi|154150822|ref|YP_001404440.1| - 0.0082 16.2 0.0 0.015 15.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain PhnA_Zn_Ribbon PF08274.12 gi|154150822|ref|YP_001404440.1| - 0.011 15.7 0.2 3.3 7.8 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HypA PF01155.19 gi|154150822|ref|YP_001404440.1| - 0.011 15.7 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_CopZ PF18423.1 gi|154150822|ref|YP_001404440.1| - 0.016 15.1 0.3 3 7.9 0.0 2.3 2 0 0 2 2 2 0 Zinc binding domain Zn-ribbon_8 PF09723.10 gi|154150822|ref|YP_001404440.1| - 0.019 15.0 0.8 0.037 14.1 0.8 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Rad50_zn_hook PF04423.14 gi|154150822|ref|YP_001404440.1| - 0.021 14.7 0.1 0.06 13.2 0.0 1.8 2 0 0 2 2 1 0 Rad50 zinc hook motif HTH_IclR PF09339.10 gi|154150822|ref|YP_001404440.1| - 0.023 14.5 0.0 0.045 13.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Zn_Tnp_IS91 PF14319.6 gi|154150822|ref|YP_001404440.1| - 0.032 14.3 0.0 0.047 13.7 0.0 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc-ribbons_6 PF07191.12 gi|154150822|ref|YP_001404440.1| - 0.05 13.6 0.2 0.092 12.7 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbons zf-RING_4 PF14570.6 gi|154150822|ref|YP_001404440.1| - 0.051 13.4 1.7 0.07 12.9 0.6 1.7 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain Zn_ribbon_SprT PF17283.2 gi|154150822|ref|YP_001404440.1| - 0.06 13.3 1.3 1.7 8.6 1.4 2.4 1 1 1 2 2 2 0 SprT-like zinc ribbon domain ADD_ATRX PF17981.1 gi|154150822|ref|YP_001404440.1| - 0.071 13.0 1.5 0.91 9.4 0.0 2.2 1 1 1 2 2 2 0 Cysteine Rich ADD domain Zn_Tnp_IS1595 PF12760.7 gi|154150822|ref|YP_001404440.1| - 0.078 13.0 0.5 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 gi|154150822|ref|YP_001404440.1| - 0.11 12.5 1.2 3.6 7.6 0.2 2.5 2 0 0 2 2 2 0 Nudix N-terminal TFIIS_C PF01096.18 gi|154150822|ref|YP_001404440.1| - 0.12 12.2 1.5 6.7 6.7 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.6 gi|154150822|ref|YP_001404440.1| - 0.13 11.7 0.5 0.13 11.7 0.5 1.6 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|154150822|ref|YP_001404440.1| - 0.13 12.3 0.1 0.31 11.1 0.1 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1610 PF07754.11 gi|154150822|ref|YP_001404440.1| - 0.3 11.1 3.0 0.61 10.1 3.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) zf_UBZ PF18439.1 gi|154150822|ref|YP_001404440.1| - 0.57 9.8 6.2 0.74 9.5 0.1 2.7 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF4428 PF14471.6 gi|154150822|ref|YP_001404440.1| - 0.78 9.7 3.0 2.2 8.3 1.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) zf-C2H2 PF00096.26 gi|154150822|ref|YP_001404440.1| - 1.3 9.6 4.3 9.2 6.9 0.3 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type HD PF01966.22 gi|154150823|ref|YP_001404441.1| - 7.5e-13 48.8 0.0 9.9e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|154150823|ref|YP_001404441.1| - 0.0067 15.9 0.0 0.18 11.3 0.1 2.2 1 1 1 2 2 2 1 HDOD domain TIL PF01826.17 gi|154150823|ref|YP_001404441.1| - 0.034 14.4 1.6 0.034 14.4 1.6 1.9 2 0 0 2 2 2 0 Trypsin Inhibitor like cysteine rich domain Crisp PF08562.10 gi|154150823|ref|YP_001404441.1| - 0.12 13.0 1.8 0.12 13.0 1.8 1.9 2 0 0 2 2 2 0 Crisp ParA PF10609.9 gi|154150825|ref|YP_001404443.1| - 4.3e-100 334.2 0.0 5.1e-100 334.0 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|154150825|ref|YP_001404443.1| - 9.2e-16 58.1 0.0 1.8e-15 57.1 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|154150825|ref|YP_001404443.1| - 1.3e-09 38.2 0.1 5.8e-09 36.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|154150825|ref|YP_001404443.1| - 7.9e-08 31.9 0.0 1.2e-07 31.2 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|154150825|ref|YP_001404443.1| - 2.8e-07 30.0 0.9 8.6e-06 25.1 0.1 2.6 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|154150825|ref|YP_001404443.1| - 0.00017 21.4 1.4 0.44 10.3 0.3 2.5 2 1 0 2 2 2 2 AAA domain CBP_BcsQ PF06564.12 gi|154150825|ref|YP_001404443.1| - 0.0025 17.3 0.4 0.022 14.2 0.5 1.9 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|154150825|ref|YP_001404443.1| - 0.0028 17.1 0.5 0.018 14.5 0.1 2.3 2 1 1 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 gi|154150825|ref|YP_001404443.1| - 0.012 15.5 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.6 gi|154150825|ref|YP_001404443.1| - 0.033 13.8 0.1 0.058 13.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|154150825|ref|YP_001404443.1| - 0.047 13.5 0.0 0.077 12.8 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|154150825|ref|YP_001404443.1| - 0.058 12.4 0.1 0.088 11.8 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|154150825|ref|YP_001404443.1| - 0.11 13.1 0.1 0.18 12.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|154150825|ref|YP_001404443.1| - 0.15 11.8 0.2 2 8.2 0.2 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|154150825|ref|YP_001404443.1| - 0.22 10.7 0.1 0.39 9.9 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain Gp_dh_C PF02800.20 gi|154150826|ref|YP_001404444.1| - 7.7e-58 194.6 2.7 1e-57 194.1 2.7 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|154150826|ref|YP_001404444.1| - 1.5e-21 76.6 0.0 1.5e-20 73.4 0.0 2.4 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DUF5405 PF17399.2 gi|154150826|ref|YP_001404444.1| - 0.11 12.8 0.5 1.6 9.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5405) Desulfoferrod_N PF06397.12 gi|154150827|ref|YP_001404445.1| - 1.2e-13 50.4 4.2 1.2e-13 50.4 4.2 1.5 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain E1-E2_ATPase PF00122.20 gi|154150828|ref|YP_001404446.1| - 1.9e-47 161.1 0.4 1.9e-47 161.1 0.4 3.9 4 1 1 5 5 5 1 E1-E2 ATPase Cation_ATPase_N PF00690.26 gi|154150828|ref|YP_001404446.1| - 1.9e-21 75.5 0.2 7.2e-21 73.7 0.0 2.2 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase PF00702.26 gi|154150828|ref|YP_001404446.1| - 2.5e-17 63.9 0.1 4e-17 63.2 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.21 gi|154150828|ref|YP_001404446.1| - 7.5e-17 61.6 11.8 7.5e-17 61.6 11.8 2.7 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Cation_ATPase PF13246.6 gi|154150828|ref|YP_001404446.1| - 4.3e-08 33.1 0.0 9.1e-08 32.1 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|154150828|ref|YP_001404446.1| - 0.00043 20.1 0.5 0.00084 19.1 0.5 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|154150828|ref|YP_001404446.1| - 0.14 12.6 0.0 0.3 11.4 0.0 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Aldo_ket_red PF00248.21 gi|154150829|ref|YP_001404447.1| - 2.7e-42 145.0 0.0 1.5e-40 139.3 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|154150829|ref|YP_001404447.1| - 1.6e-10 41.3 6.5 3.5e-10 40.3 6.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150829|ref|YP_001404447.1| - 5.9e-08 32.8 7.0 1.3e-07 31.7 7.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150829|ref|YP_001404447.1| - 1.7e-05 24.8 8.1 0.0012 18.9 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154150829|ref|YP_001404447.1| - 2.8e-05 24.5 6.3 6e-05 23.4 6.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|154150829|ref|YP_001404447.1| - 0.00034 20.3 13.3 0.001 18.8 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|154150829|ref|YP_001404447.1| - 0.002 18.3 0.6 2.7 8.2 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|154150829|ref|YP_001404447.1| - 0.0034 18.2 3.5 0.84 10.5 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154150829|ref|YP_001404447.1| - 0.0034 18.3 5.7 0.19 12.7 2.0 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|154150829|ref|YP_001404447.1| - 0.0068 16.4 2.5 0.0068 16.4 2.5 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154150829|ref|YP_001404447.1| - 0.0072 16.9 10.3 0.026 15.1 10.3 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154150829|ref|YP_001404447.1| - 0.019 15.1 6.2 1.5 9.0 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|154150829|ref|YP_001404447.1| - 0.022 14.5 3.6 0.034 13.9 0.1 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.7 gi|154150829|ref|YP_001404447.1| - 0.023 14.8 3.4 0.023 14.8 3.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|154150829|ref|YP_001404447.1| - 0.028 14.9 12.2 0.036 14.6 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Lactamase_B PF00753.27 gi|154150830|ref|YP_001404448.1| - 2.3e-23 83.2 2.6 2.9e-23 82.9 2.6 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|154150830|ref|YP_001404448.1| - 0.00013 21.6 0.0 0.00018 21.1 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain TetR_N PF00440.23 gi|154150831|ref|YP_001404449.1| - 1.1e-14 53.9 0.0 2.3e-14 52.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_10 PF16295.5 gi|154150831|ref|YP_001404449.1| - 3.3e-08 33.9 0.0 4.3e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_33 PF13305.6 gi|154150831|ref|YP_001404449.1| - 0.05 14.3 0.0 0.097 13.4 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|154150831|ref|YP_001404449.1| - 0.052 13.8 0.0 0.12 12.6 0.0 1.7 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain NS3 PF17530.2 gi|154150831|ref|YP_001404449.1| - 0.096 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Non-structural protein NS3 ABC_tran PF00005.27 gi|154150832|ref|YP_001404450.1| - 1e-25 90.8 0.0 1.4e-25 90.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154150832|ref|YP_001404450.1| - 2.9e-09 37.2 0.1 6.9e-05 22.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|154150832|ref|YP_001404450.1| - 0.0033 17.1 0.1 0.0065 16.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|154150832|ref|YP_001404450.1| - 0.0038 17.0 0.4 1.8 8.2 0.2 2.1 2 0 0 2 2 2 2 AAA ATPase domain CLP1_P PF16575.5 gi|154150832|ref|YP_001404450.1| - 0.0061 16.4 0.0 0.0099 15.7 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SMC_N PF02463.19 gi|154150832|ref|YP_001404450.1| - 0.0077 15.7 0.9 0.4 10.1 0.2 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Lum_binding PF00677.17 gi|154150832|ref|YP_001404450.1| - 0.02 14.9 0.1 0.084 12.9 0.1 2.1 2 0 0 2 2 2 0 Lumazine binding domain AAA_23 PF13476.6 gi|154150832|ref|YP_001404450.1| - 0.041 14.4 0.2 0.073 13.6 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|154150832|ref|YP_001404450.1| - 0.05 13.3 0.0 0.081 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|154150832|ref|YP_001404450.1| - 0.11 12.4 0.2 0.24 11.3 0.2 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|154150832|ref|YP_001404450.1| - 0.13 12.6 0.0 0.15 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|154150832|ref|YP_001404450.1| - 0.14 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase MeaB PF03308.16 gi|154150832|ref|YP_001404450.1| - 0.18 10.7 0.5 0.27 10.2 0.5 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AI-2E_transport PF01594.16 gi|154150834|ref|YP_001404452.1| - 9.3e-36 123.6 44.9 1.3e-35 123.1 44.9 1.2 1 0 0 1 1 1 1 AI-2E family transporter CbiM PF01891.16 gi|154150836|ref|YP_001404454.1| - 1.8e-55 188.0 17.3 2e-55 187.8 17.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF1129 PF06570.11 gi|154150836|ref|YP_001404454.1| - 1.6 8.2 8.1 0.29 10.6 3.9 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) PufQ PF05398.11 gi|154150836|ref|YP_001404454.1| - 5.5 7.2 6.9 1.2 9.3 0.6 2.4 1 1 1 2 2 2 0 PufQ cytochrome subunit ThrE PF06738.12 gi|154150836|ref|YP_001404454.1| - 6.6 6.0 13.5 6.5 6.0 11.2 2.1 1 1 1 2 2 2 0 Putative threonine/serine exporter CbiN PF02553.15 gi|154150837|ref|YP_001404455.1| - 3.2e-21 75.1 1.0 4e-21 74.8 1.0 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN STE3 PF02076.15 gi|154150837|ref|YP_001404455.1| - 0.021 14.1 0.0 0.024 13.9 0.0 1.0 1 0 0 1 1 1 0 Pheromone A receptor CbiQ PF02361.16 gi|154150838|ref|YP_001404456.1| - 3.8e-38 131.3 13.2 5.7e-38 130.7 13.2 1.2 1 0 0 1 1 1 1 Cobalt transport protein DUF3671 PF12420.8 gi|154150838|ref|YP_001404456.1| - 2.7 8.1 5.2 13 5.9 5.0 2.3 1 1 0 1 1 1 0 Protein of unknown function ABC_tran PF00005.27 gi|154150839|ref|YP_001404457.1| - 3.2e-31 108.6 0.0 5.6e-31 107.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154150839|ref|YP_001404457.1| - 4.4e-17 62.9 0.0 2.4e-12 47.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|154150839|ref|YP_001404457.1| - 1.8e-06 27.5 0.0 0.00025 20.5 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 gi|154150839|ref|YP_001404457.1| - 0.00065 19.5 0.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_13 PF13166.6 gi|154150839|ref|YP_001404457.1| - 0.0011 17.7 0.0 0.054 12.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|154150839|ref|YP_001404457.1| - 0.0029 17.3 0.1 0.0063 16.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|154150839|ref|YP_001404457.1| - 0.0035 17.1 0.0 1.7 8.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_24 PF13479.6 gi|154150839|ref|YP_001404457.1| - 0.016 14.9 0.0 0.047 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|154150839|ref|YP_001404457.1| - 0.017 14.9 0.2 0.05 13.3 0.2 1.9 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|154150839|ref|YP_001404457.1| - 0.022 14.0 0.0 0.051 12.8 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_33 PF13671.6 gi|154150839|ref|YP_001404457.1| - 0.027 14.7 0.0 1.8 8.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|154150839|ref|YP_001404457.1| - 0.038 14.2 0.0 3.1 8.0 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|154150839|ref|YP_001404457.1| - 0.041 14.4 0.1 0.069 13.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|154150839|ref|YP_001404457.1| - 0.072 13.3 0.4 0.79 10.0 0.4 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DLIC PF05783.11 gi|154150839|ref|YP_001404457.1| - 0.082 11.7 0.1 0.13 11.1 0.1 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_25 PF13481.6 gi|154150839|ref|YP_001404457.1| - 0.11 12.1 0.0 0.26 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain BCA_ABC_TP_C PF12399.8 gi|154150839|ref|YP_001404457.1| - 0.12 12.3 0.0 1.5 8.8 0.0 2.4 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter Yip1 PF04893.17 gi|154150840|ref|YP_001404458.1| - 4.2e-33 114.5 22.6 5.7e-33 114.1 22.6 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|154150840|ref|YP_001404458.1| - 0.037 13.8 20.8 0.18 11.6 20.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) Yip1 PF04893.17 gi|154150841|ref|YP_001404459.1| - 2.4e-08 33.9 21.2 2.4e-08 33.9 21.2 1.7 1 1 0 1 1 1 1 Yip1 domain TMEM154 PF15102.6 gi|154150841|ref|YP_001404459.1| - 0.43 10.5 2.0 0.67 9.8 2.0 1.3 1 0 0 1 1 1 0 TMEM154 protein family AP_endonuc_2 PF01261.24 gi|154150842|ref|YP_001404460.1| - 7.5e-10 38.6 0.4 1.4e-09 37.7 0.3 1.5 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel MS_channel PF00924.18 gi|154150843|ref|YP_001404461.1| - 6.8e-55 185.8 2.1 6.8e-55 185.8 2.1 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF2755 PF10954.8 gi|154150843|ref|YP_001404461.1| - 3.2 7.7 5.9 8.7 6.3 0.4 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2755) HypD PF01924.16 gi|154150844|ref|YP_001404462.1| - 1.9e-135 451.5 0.1 2.2e-135 451.3 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family CbiQ PF02361.16 gi|154150845|ref|YP_001404463.1| - 5.4e-29 101.4 14.3 8.6e-29 100.7 14.3 1.2 1 0 0 1 1 1 1 Cobalt transport protein COX16 PF14138.6 gi|154150845|ref|YP_001404463.1| - 0.18 12.3 0.2 0.42 11.2 0.2 1.6 1 0 0 1 1 1 0 Cytochrome c oxidase assembly protein COX16 Claudin_3 PF06653.11 gi|154150845|ref|YP_001404463.1| - 1 9.3 10.7 1.1 9.2 4.5 2.4 2 0 0 2 2 2 0 Tight junction protein, Claudin-like DUF2070 PF09843.9 gi|154150845|ref|YP_001404463.1| - 2.9 6.1 12.8 3.5 5.8 12.8 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|154150846|ref|YP_001404464.1| - 2.3e-55 186.8 0.0 2.5e-29 102.6 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|154150846|ref|YP_001404464.1| - 4.2e-21 76.0 4.5 2.2e-06 27.7 0.0 4.1 2 2 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|154150846|ref|YP_001404464.1| - 8.5e-21 74.4 0.1 7.6e-11 41.9 0.0 3.0 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|154150846|ref|YP_001404464.1| - 6.4e-13 49.4 0.3 4.7e-05 23.8 0.1 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|154150846|ref|YP_001404464.1| - 7.9e-12 45.6 1.2 5.5e-05 23.5 0.0 3.0 2 2 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|154150846|ref|YP_001404464.1| - 2.2e-10 40.5 0.7 0.015 15.0 0.1 4.2 4 0 0 4 4 4 3 IstB-like ATP binding protein AAA_29 PF13555.6 gi|154150846|ref|YP_001404464.1| - 1.3e-09 37.7 0.0 0.00026 20.7 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|154150846|ref|YP_001404464.1| - 4.7e-08 33.8 0.6 0.00089 19.8 0.0 2.3 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|154150846|ref|YP_001404464.1| - 2e-07 30.9 2.2 0.013 15.3 0.0 3.1 2 2 0 2 2 2 2 AAA domain TniB PF05621.11 gi|154150846|ref|YP_001404464.1| - 6.7e-07 28.9 0.8 0.34 10.3 0.0 4.1 4 0 0 4 4 4 1 Bacterial TniB protein AAA_13 PF13166.6 gi|154150846|ref|YP_001404464.1| - 1.3e-06 27.4 0.4 0.22 10.1 0.0 3.8 4 0 0 4 4 4 2 AAA domain RsgA_GTPase PF03193.16 gi|154150846|ref|YP_001404464.1| - 1.4e-06 28.3 0.1 0.051 13.5 0.1 2.8 2 1 0 2 2 2 2 RsgA GTPase AAA_25 PF13481.6 gi|154150846|ref|YP_001404464.1| - 1.5e-06 27.9 2.1 0.013 15.1 0.2 3.8 4 0 0 4 4 4 2 AAA domain ATPase PF06745.13 gi|154150846|ref|YP_001404464.1| - 1.8e-06 27.5 0.5 0.063 12.6 0.1 3.2 3 0 0 3 3 3 2 KaiC SRP54 PF00448.22 gi|154150846|ref|YP_001404464.1| - 2.1e-06 27.5 0.2 0.0043 16.7 0.1 2.4 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA PF00004.29 gi|154150846|ref|YP_001404464.1| - 2.9e-06 27.7 1.6 0.0043 17.5 0.2 3.5 3 2 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|154150846|ref|YP_001404464.1| - 6.7e-06 26.1 0.2 0.13 12.3 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 gi|154150846|ref|YP_001404464.1| - 8.6e-06 25.9 0.1 0.58 10.4 0.1 3.6 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|154150846|ref|YP_001404464.1| - 9.5e-06 25.5 3.8 0.11 12.1 0.0 3.6 4 0 0 4 4 4 2 AAA domain Mg_chelatase PF01078.21 gi|154150846|ref|YP_001404464.1| - 1.2e-05 24.8 0.4 0.084 12.3 0.4 2.8 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|154150846|ref|YP_001404464.1| - 1.2e-05 25.3 0.0 0.26 11.1 0.0 3.1 3 1 1 4 4 3 2 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|154150846|ref|YP_001404464.1| - 1.9e-05 24.7 0.5 0.017 15.1 0.0 2.6 3 0 0 3 3 2 1 NACHT domain AAA_18 PF13238.6 gi|154150846|ref|YP_001404464.1| - 2.9e-05 24.6 3.0 0.031 14.8 0.7 3.2 3 1 0 3 3 2 2 AAA domain AAA_7 PF12775.7 gi|154150846|ref|YP_001404464.1| - 3.1e-05 23.6 0.1 0.17 11.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_33 PF13671.6 gi|154150846|ref|YP_001404464.1| - 3.1e-05 24.1 2.2 0.27 11.4 0.3 3.6 3 1 0 3 3 3 2 AAA domain NTPase_1 PF03266.15 gi|154150846|ref|YP_001404464.1| - 3.4e-05 23.8 7.2 0.009 15.9 0.2 3.5 4 0 0 4 4 4 2 NTPase NB-ARC PF00931.22 gi|154150846|ref|YP_001404464.1| - 0.00011 21.5 0.4 0.071 12.3 0.0 3.1 4 0 0 4 4 3 1 NB-ARC domain AAA_28 PF13521.6 gi|154150846|ref|YP_001404464.1| - 0.00029 21.1 3.3 0.19 12.0 0.1 2.7 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|154150846|ref|YP_001404464.1| - 0.00034 20.6 1.9 0.096 12.7 0.0 3.5 4 0 0 4 4 4 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|154150846|ref|YP_001404464.1| - 0.00042 20.7 0.0 1.4 9.3 0.0 2.5 2 0 0 2 2 2 2 RNA helicase T2SSE PF00437.20 gi|154150846|ref|YP_001404464.1| - 0.00043 19.4 0.4 0.0097 15.0 0.1 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_14 PF13173.6 gi|154150846|ref|YP_001404464.1| - 0.00048 20.2 0.0 1.8 8.6 0.0 3.0 3 0 0 3 3 2 2 AAA domain cobW PF02492.19 gi|154150846|ref|YP_001404464.1| - 0.00068 19.3 1.1 0.76 9.3 0.3 2.6 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 gi|154150846|ref|YP_001404464.1| - 0.00094 18.9 0.6 0.43 10.3 0.1 2.6 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 gi|154150846|ref|YP_001404464.1| - 0.0011 18.8 1.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein APS_kinase PF01583.20 gi|154150846|ref|YP_001404464.1| - 0.0013 18.7 0.4 0.22 11.4 0.1 2.8 3 0 0 3 3 2 1 Adenylylsulphate kinase Sigma54_activat PF00158.26 gi|154150846|ref|YP_001404464.1| - 0.0013 18.5 0.1 0.4 10.4 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain PRK PF00485.18 gi|154150846|ref|YP_001404464.1| - 0.0016 18.2 2.2 1.4 8.6 0.1 2.9 3 0 0 3 3 3 2 Phosphoribulokinase / Uridine kinase family Roc PF08477.13 gi|154150846|ref|YP_001404464.1| - 0.0017 18.6 0.5 0.45 10.8 0.0 2.9 3 0 0 3 3 2 1 Ras of Complex, Roc, domain of DAPkinase Rad17 PF03215.15 gi|154150846|ref|YP_001404464.1| - 0.0017 18.3 0.0 0.052 13.5 0.0 2.5 2 0 0 2 2 2 1 Rad17 P-loop domain DEAD PF00270.29 gi|154150846|ref|YP_001404464.1| - 0.002 17.9 1.6 0.12 12.1 0.1 3.0 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_15 PF13175.6 gi|154150846|ref|YP_001404464.1| - 0.0022 17.8 0.0 0.017 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain PhoH PF02562.16 gi|154150846|ref|YP_001404464.1| - 0.0026 17.2 0.2 0.2 11.1 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein MMR_HSR1 PF01926.23 gi|154150846|ref|YP_001404464.1| - 0.0032 17.5 1.1 2 8.5 0.0 3.2 3 1 0 3 3 2 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|154150846|ref|YP_001404464.1| - 0.0037 16.6 0.3 3 7.1 0.0 3.0 3 0 0 3 3 3 0 Zeta toxin G-alpha PF00503.20 gi|154150846|ref|YP_001404464.1| - 0.0095 15.1 0.0 0.044 12.9 0.0 1.9 2 0 0 2 2 2 1 G-protein alpha subunit MukB PF04310.12 gi|154150846|ref|YP_001404464.1| - 0.01 15.6 0.4 0.11 12.2 0.0 2.5 3 0 0 3 3 2 0 MukB N-terminal AAA_19 PF13245.6 gi|154150846|ref|YP_001404464.1| - 0.012 16.0 6.7 0.57 10.5 1.7 3.2 3 1 0 3 3 2 0 AAA domain AAA_27 PF13514.6 gi|154150846|ref|YP_001404464.1| - 0.016 14.9 0.1 1 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Ribosomal_L4 PF00573.22 gi|154150846|ref|YP_001404464.1| - 0.022 14.5 0.1 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 Ribosomal protein L4/L1 family TIP49 PF06068.13 gi|154150846|ref|YP_001404464.1| - 0.022 14.0 0.3 0.22 10.7 0.2 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain MobB PF03205.14 gi|154150846|ref|YP_001404464.1| - 0.027 14.3 4.7 0.85 9.5 0.0 3.6 4 1 0 4 4 4 0 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|154150846|ref|YP_001404464.1| - 0.04 12.9 0.9 0.95 8.4 0.1 2.5 3 0 0 3 3 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB KAP_NTPase PF07693.14 gi|154150846|ref|YP_001404464.1| - 0.055 12.7 0.0 3.3 6.9 0.0 2.3 2 0 0 2 2 2 0 KAP family P-loop domain DnaB_C PF03796.15 gi|154150846|ref|YP_001404464.1| - 0.06 12.7 0.1 1.9 7.7 0.0 2.6 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain Septin PF00735.18 gi|154150846|ref|YP_001404464.1| - 0.084 12.1 0.6 11 5.2 0.0 2.2 2 0 0 2 2 2 0 Septin RuvB_N PF05496.12 gi|154150846|ref|YP_001404464.1| - 0.086 12.6 0.2 0.72 9.6 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DLIC PF05783.11 gi|154150846|ref|YP_001404464.1| - 0.099 11.5 0.1 2.7 6.7 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_11 PF13086.6 gi|154150846|ref|YP_001404464.1| - 0.11 12.3 0.1 5.4 6.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|154150846|ref|YP_001404464.1| - 0.13 11.0 0.1 9.4 4.8 0.0 2.3 2 0 0 2 2 2 0 RNA12 protein ATP-synt_ab PF00006.25 gi|154150846|ref|YP_001404464.1| - 0.16 11.6 0.1 2.2 7.9 0.0 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain CbiA PF01656.23 gi|154150846|ref|YP_001404464.1| - 0.17 11.9 4.6 2.9 8.0 0.7 3.3 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2075 PF09848.9 gi|154150846|ref|YP_001404464.1| - 0.21 10.8 0.7 0.8 8.9 0.2 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DIM PF08194.12 gi|154150846|ref|YP_001404464.1| - 0.6 10.4 2.7 37 4.6 0.2 3.4 3 0 0 3 3 3 0 DIM protein TrpP PF17099.5 gi|154150847|ref|YP_001404465.1| - 5e-12 45.9 19.5 7.4e-12 45.4 19.5 1.2 1 0 0 1 1 1 1 Tryptophan transporter TrpP Thioredoxin PF00085.20 gi|154150848|ref|YP_001404466.1| - 0.0043 17.0 0.0 0.0068 16.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Gp49 PF05973.14 gi|154150848|ref|YP_001404466.1| - 0.12 12.5 0.0 1.3 9.2 0.0 2.1 2 0 0 2 2 2 0 Phage derived protein Gp49-like (DUF891) MoeA_N PF03453.17 gi|154150849|ref|YP_001404467.1| - 2.5e-39 134.6 0.1 4.8e-39 133.6 0.1 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.7 gi|154150849|ref|YP_001404467.1| - 1.2e-35 122.4 0.0 1.2e-34 119.1 0.0 2.1 2 0 0 2 2 2 1 PBP superfamily domain MoCF_biosynth PF00994.24 gi|154150849|ref|YP_001404467.1| - 5.1e-26 91.1 0.1 1e-25 90.1 0.1 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|154150849|ref|YP_001404467.1| - 4.8e-05 23.4 2.2 0.0025 18.0 0.0 3.1 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) LysR_substrate PF03466.20 gi|154150849|ref|YP_001404467.1| - 0.00012 21.6 0.5 0.069 12.5 0.0 3.4 2 1 1 3 3 3 1 LysR substrate binding domain SBP_bac_11 PF13531.6 gi|154150849|ref|YP_001404467.1| - 0.025 14.3 0.0 0.068 12.9 0.0 1.7 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein Aldedh PF00171.22 gi|154150850|ref|YP_001404468.1| - 1e-160 535.2 0.0 1.3e-160 534.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family PGF-CTERM PF18204.1 gi|154150851|ref|YP_001404469.1| - 5.8 7.0 13.7 0.06 13.3 2.4 2.8 2 0 0 2 2 2 0 PGF-CTERM motif FmdE PF02663.14 gi|154150852|ref|YP_001404470.1| - 2e-22 79.7 0.0 2.7e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon TF_Zn_Ribbon PF08271.12 gi|154150852|ref|YP_001404470.1| - 0.75 9.4 4.1 1.4 8.5 4.1 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|154150852|ref|YP_001404470.1| - 1.5 8.7 6.0 0.65 9.8 3.0 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Response_reg PF00072.24 gi|154150854|ref|YP_001404472.1| - 3.5e-23 81.9 0.0 5.9e-23 81.2 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|154150854|ref|YP_001404472.1| - 1.3e-05 25.4 0.0 3.1e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|154150854|ref|YP_001404472.1| - 0.0014 18.6 0.1 0.0073 16.3 0.1 2.3 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|154150854|ref|YP_001404472.1| - 0.0029 17.6 0.0 0.009 16.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|154150854|ref|YP_001404472.1| - 0.034 14.2 0.0 0.091 12.8 0.0 1.7 1 0 0 1 1 1 0 PAS fold AMMECR1 PF01871.17 gi|154150855|ref|YP_001404473.1| - 8.2e-51 171.9 0.0 9.3e-51 171.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 TGT PF01702.18 gi|154150856|ref|YP_001404474.1| - 2.5e-75 253.8 0.0 3.2e-75 253.5 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|154150857|ref|YP_001404475.1| - 3.3e-57 192.7 0.0 4.7e-57 192.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|154150857|ref|YP_001404475.1| - 9.6e-12 44.7 0.5 2.3e-11 43.5 0.5 1.6 1 0 0 1 1 1 1 PUA domain AlaDh_PNT_C PF01262.21 gi|154150858|ref|YP_001404476.1| - 4.9e-67 225.3 5.2 7.2e-67 224.8 5.2 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 gi|154150858|ref|YP_001404476.1| - 1e-42 145.7 1.0 1.3e-41 142.1 0.2 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, N-terminal domain 2-Hacid_dh_C PF02826.19 gi|154150858|ref|YP_001404476.1| - 4.1e-07 29.5 0.1 0.025 13.9 0.0 2.5 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|154150858|ref|YP_001404476.1| - 0.00083 19.5 0.6 0.041 14.1 0.7 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|154150858|ref|YP_001404476.1| - 0.0022 16.7 0.4 0.0055 15.5 0.4 1.6 1 0 0 1 1 1 1 HI0933-like protein ADH_zinc_N PF00107.26 gi|154150858|ref|YP_001404476.1| - 0.013 15.5 0.7 0.039 13.9 0.7 2.0 1 1 0 1 1 1 0 Zinc-binding dehydrogenase UDPG_MGDP_dh_C PF03720.15 gi|154150858|ref|YP_001404476.1| - 0.082 13.3 0.2 11 6.5 0.0 2.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TusA PF01206.17 gi|154150858|ref|YP_001404476.1| - 0.15 11.9 0.0 7.7 6.4 0.1 3.0 3 0 0 3 3 3 0 Sulfurtransferase TusA NAD_binding_2 PF03446.15 gi|154150858|ref|YP_001404476.1| - 0.45 10.7 4.6 1.1 9.4 2.5 2.5 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase PNTB_4TM PF12769.7 gi|154150859|ref|YP_001404477.1| - 2.5e-29 101.6 6.1 2.9e-29 101.3 6.1 1.0 1 0 0 1 1 1 1 4TM region of pyridine nucleotide transhydrogenase, mitoch SUR7 PF06687.12 gi|154150859|ref|YP_001404477.1| - 0.014 15.0 1.1 0.018 14.7 1.1 1.1 1 0 0 1 1 1 0 SUR7/PalI family DUF485 PF04341.12 gi|154150859|ref|YP_001404477.1| - 0.24 11.3 7.6 0.083 12.8 3.9 1.9 1 1 1 2 2 2 0 Protein of unknown function, DUF485 PNTB PF02233.16 gi|154150860|ref|YP_001404478.1| - 3.3e-166 553.8 24.0 3.7e-166 553.6 24.0 1.0 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit TPP_enzyme_M PF00205.22 gi|154150860|ref|YP_001404478.1| - 0.0086 15.8 0.4 0.033 13.9 0.4 2.0 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain VWA PF00092.28 gi|154150862|ref|YP_001404480.1| - 0.00073 19.8 0.0 0.0015 18.8 0.0 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|154150862|ref|YP_001404480.1| - 0.00074 20.1 0.0 0.0021 18.7 0.0 1.7 1 1 0 1 1 1 1 von Willebrand factor type A domain PP2C_2 PF13672.6 gi|154150863|ref|YP_001404481.1| - 3.4e-33 115.1 0.5 4.4e-33 114.7 0.5 1.1 1 0 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.12 gi|154150863|ref|YP_001404481.1| - 4.2e-05 23.5 0.0 5.4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Pkinase PF00069.25 gi|154150864|ref|YP_001404482.1| - 3.8e-16 59.3 0.0 3.3e-14 52.9 0.0 2.0 2 0 0 2 2 2 2 Protein kinase domain Pkinase_Tyr PF07714.17 gi|154150864|ref|YP_001404482.1| - 0.00017 21.0 0.1 0.00095 18.5 0.0 1.9 2 0 0 2 2 2 1 Protein tyrosine kinase Pkinase_fungal PF17667.1 gi|154150864|ref|YP_001404482.1| - 0.0066 15.3 0.0 0.0096 14.7 0.0 1.1 1 0 0 1 1 1 1 Fungal protein kinase HscB_4_cys PF18256.1 gi|154150864|ref|YP_001404482.1| - 0.4 10.6 5.2 13 5.7 0.4 2.9 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif HEAT_2 PF13646.6 gi|154150865|ref|YP_001404483.1| - 1.8e-12 47.5 11.7 4.9e-09 36.5 2.6 3.2 1 1 2 3 3 3 2 HEAT repeats HEAT PF02985.22 gi|154150865|ref|YP_001404483.1| - 5.2e-09 35.6 2.3 0.00029 20.9 0.0 3.8 4 0 0 4 4 4 2 HEAT repeat HEAT_PBS PF03130.16 gi|154150865|ref|YP_001404483.1| - 1.5e-05 25.2 4.7 5.1e-05 23.6 0.4 3.5 3 0 0 3 3 3 1 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|154150865|ref|YP_001404483.1| - 3.4e-05 24.2 5.8 0.00068 20.1 0.4 3.1 3 0 0 3 3 3 2 HEAT-like repeat Cadherin-like PF12733.7 gi|154150866|ref|YP_001404484.1| - 0.54 10.8 4.2 0.55 10.8 0.7 2.1 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain FtsH_ext PF06480.15 gi|154150866|ref|YP_001404484.1| - 3.7 7.9 6.5 1.5 9.2 0.4 2.5 2 1 0 2 2 2 0 FtsH Extracellular DUF2749 PF10907.8 gi|154150866|ref|YP_001404484.1| - 8.2 6.7 6.6 3 8.1 3.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) Radical_SAM PF04055.21 gi|154150867|ref|YP_001404485.1| - 4.2e-25 89.0 0.1 7.3e-25 88.3 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|154150867|ref|YP_001404485.1| - 4.4e-08 33.2 0.1 1.2e-07 31.8 0.1 1.7 1 0 0 1 1 1 1 B12 binding domain Metallophos_2 PF12850.7 gi|154150868|ref|YP_001404486.1| - 4.4e-14 53.0 0.9 8.2e-14 52.1 0.9 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|154150868|ref|YP_001404486.1| - 5.2e-13 50.0 1.0 2.7e-12 47.6 1.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|154150868|ref|YP_001404486.1| - 6.9e-07 28.9 0.6 1.7e-05 24.3 0.3 2.6 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily CYTH PF01928.21 gi|154150869|ref|YP_001404487.1| - 3.7e-28 98.6 0.2 4.1e-28 98.5 0.2 1.0 1 0 0 1 1 1 1 CYTH domain FKBP_C PF00254.28 gi|154150870|ref|YP_001404488.1| - 4.7e-16 58.9 0.1 3.1e-14 53.1 0.1 2.4 2 1 0 2 2 2 2 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|154150870|ref|YP_001404488.1| - 0.00078 19.5 0.0 0.0018 18.3 0.0 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal GT87 PF09594.10 gi|154150871|ref|YP_001404489.1| - 1.3e-24 87.2 17.7 1.3e-24 87.2 17.7 1.7 2 0 0 2 2 2 1 Glycosyltransferase family 87 eRF1_1 PF03463.15 gi|154150872|ref|YP_001404490.1| - 4e-25 88.3 0.0 6.6e-25 87.6 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|154150872|ref|YP_001404490.1| - 1.1e-20 74.2 0.1 4.5e-20 72.2 0.1 2.1 1 1 0 1 1 1 1 eRF1 domain 3 Ribosomal_L7Ae PF01248.26 gi|154150872|ref|YP_001404490.1| - 0.081 12.7 0.0 1.1 9.0 0.0 2.1 1 1 1 2 2 2 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_2 PF03464.15 gi|154150872|ref|YP_001404490.1| - 0.13 12.6 0.0 0.35 11.2 0.0 1.7 2 0 0 2 2 2 0 eRF1 domain 2 FbpA PF05833.11 gi|154150873|ref|YP_001404491.1| - 2.8e-58 197.8 0.0 3.7e-58 197.4 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|154150873|ref|YP_001404491.1| - 4.7e-22 78.7 0.0 9.1e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|154150873|ref|YP_001404491.1| - 0.00071 19.7 0.0 0.0039 17.4 0.0 2.2 2 0 0 2 2 2 1 NFACT protein RNA binding domain DUF669 PF05037.13 gi|154150873|ref|YP_001404491.1| - 0.12 12.5 0.2 0.35 11.0 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF669) EIAV_GP90 PF00971.18 gi|154150874|ref|YP_001404492.1| - 0.0045 15.7 0.0 0.0054 15.5 0.0 1.1 1 0 0 1 1 1 1 EIAV coat protein, gp90 E1-E2_ATPase PF00122.20 gi|154150874|ref|YP_001404492.1| - 0.021 14.3 1.1 0.026 14.0 0.5 1.4 1 1 0 1 1 1 0 E1-E2 ATPase DUF2070 PF09843.9 gi|154150874|ref|YP_001404492.1| - 0.25 9.6 5.0 0.27 9.5 5.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF5379 PF17350.2 gi|154150874|ref|YP_001404492.1| - 0.33 11.2 7.8 0.42 10.9 7.8 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5379) DUF3119 PF11317.8 gi|154150874|ref|YP_001404492.1| - 0.34 11.2 4.8 0.56 10.5 4.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3119) Rab5ip PF07019.12 gi|154150874|ref|YP_001404492.1| - 2.2 8.9 10.3 4.3 8.0 10.3 1.5 1 1 0 1 1 1 0 Rab5-interacting protein (Rab5ip) ABC_tran PF00005.27 gi|154150875|ref|YP_001404493.1| - 1.5e-41 142.1 0.0 1.1e-19 71.2 0.0 2.4 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|154150875|ref|YP_001404493.1| - 6.8e-14 51.8 7.3 6.1e-05 22.6 1.6 4.0 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|154150875|ref|YP_001404493.1| - 4.8e-11 42.3 3.4 1.2e-10 41.0 3.4 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|154150875|ref|YP_001404493.1| - 1.4e-10 41.5 6.0 0.041 13.7 0.4 4.3 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|154150875|ref|YP_001404493.1| - 9.9e-08 31.5 3.8 9.9e-08 31.5 3.8 2.4 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154150875|ref|YP_001404493.1| - 2.5e-05 24.2 11.3 9.4e-05 22.3 2.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154150875|ref|YP_001404493.1| - 8e-05 22.7 9.6 0.00014 21.9 9.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|154150875|ref|YP_001404493.1| - 0.00013 22.4 0.6 0.45 10.9 0.0 3.3 2 2 1 3 3 3 1 AAA ATPase domain AAA_15 PF13175.6 gi|154150875|ref|YP_001404493.1| - 0.00026 20.8 0.1 0.82 9.3 0.0 2.5 3 0 0 3 3 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|154150875|ref|YP_001404493.1| - 0.0003 20.7 0.3 0.9 9.4 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase RNA_helicase PF00910.22 gi|154150875|ref|YP_001404493.1| - 0.00038 20.8 0.1 0.76 10.2 0.0 2.7 2 0 0 2 2 2 2 RNA helicase NB-ARC PF00931.22 gi|154150875|ref|YP_001404493.1| - 0.001 18.3 0.0 0.62 9.2 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain Fer4_7 PF12838.7 gi|154150875|ref|YP_001404493.1| - 0.0012 19.3 6.3 0.0039 17.8 6.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_29 PF13555.6 gi|154150875|ref|YP_001404493.1| - 0.0015 18.3 2.2 0.53 10.1 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4_2 PF12797.7 gi|154150875|ref|YP_001404493.1| - 0.0022 18.0 0.6 0.0022 18.0 0.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|154150875|ref|YP_001404493.1| - 0.0027 17.8 9.5 0.003 17.7 0.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150875|ref|YP_001404493.1| - 0.0037 17.4 7.6 0.012 15.8 7.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_18 PF13238.6 gi|154150875|ref|YP_001404493.1| - 0.0048 17.4 0.4 3.5 8.2 0.0 2.9 3 0 0 3 3 2 1 AAA domain AAA_28 PF13521.6 gi|154150875|ref|YP_001404493.1| - 0.0049 17.1 0.3 3 8.1 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_24 PF13479.6 gi|154150875|ref|YP_001404493.1| - 0.0077 16.0 0.5 1.7 8.4 0.1 2.5 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|154150875|ref|YP_001404493.1| - 0.0077 16.4 1.4 0.65 10.2 0.2 3.2 3 1 0 3 3 3 1 AAA domain NACHT PF05729.12 gi|154150875|ref|YP_001404493.1| - 0.013 15.4 0.2 1.3 8.9 0.0 2.5 2 0 0 2 2 2 0 NACHT domain Fer4_16 PF13484.6 gi|154150875|ref|YP_001404493.1| - 0.017 16.1 0.3 0.017 16.1 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain AAA_22 PF13401.6 gi|154150875|ref|YP_001404493.1| - 0.018 15.3 2.0 0.79 10.0 0.1 3.0 2 2 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|154150875|ref|YP_001404493.1| - 0.03 14.8 1.6 1.5 9.3 0.4 2.4 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|154150875|ref|YP_001404493.1| - 0.03 14.4 0.3 18 5.4 0.0 3.3 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|154150875|ref|YP_001404493.1| - 0.036 14.5 0.6 12 6.3 0.0 2.7 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|154150875|ref|YP_001404493.1| - 0.048 13.9 0.0 24 5.2 0.0 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|154150875|ref|YP_001404493.1| - 0.064 11.9 0.2 0.57 8.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|154150875|ref|YP_001404493.1| - 0.12 12.3 0.1 1.8 8.4 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain Fer4_8 PF13183.6 gi|154150875|ref|YP_001404493.1| - 0.16 12.4 2.3 0.19 12.2 0.1 2.2 2 0 0 2 2 1 0 4Fe-4S dicluster domain MeaB PF03308.16 gi|154150875|ref|YP_001404493.1| - 0.25 10.3 3.1 6 5.8 0.2 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|154150875|ref|YP_001404493.1| - 0.29 11.2 1.8 12 6.0 0.2 2.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase Fer4_4 PF12800.7 gi|154150875|ref|YP_001404493.1| - 0.32 11.6 12.4 0.68 10.6 2.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF87 PF01935.17 gi|154150875|ref|YP_001404493.1| - 0.36 10.9 9.5 3 7.9 0.2 3.3 4 0 0 4 4 3 0 Helicase HerA, central domain AAA_25 PF13481.6 gi|154150875|ref|YP_001404493.1| - 2.7 7.5 8.7 1.3 8.6 0.1 3.7 4 0 0 4 4 4 0 AAA domain Fer4_22 PF17179.4 gi|154150875|ref|YP_001404493.1| - 9.2 7.2 8.2 0.56 11.1 2.4 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Reg_prop PF07494.11 gi|154150876|ref|YP_001404494.1| - 1.7e-10 39.8 2.1 0.001 19.0 0.1 5.1 5 0 0 5 5 5 3 Two component regulator propeller SGL PF08450.12 gi|154150876|ref|YP_001404494.1| - 0.0065 16.1 0.1 0.54 9.8 0.1 2.7 2 1 1 3 3 3 3 SMP-30/Gluconolactonase/LRE-like region CheD PF03975.13 gi|154150877|ref|YP_001404495.1| - 6.9e-32 109.8 0.0 8.1e-32 109.6 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 gi|154150878|ref|YP_001404496.1| - 3.5e-20 71.6 3.4 8.8e-10 38.3 0.1 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|154150878|ref|YP_001404496.1| - 9.2e-08 32.2 1.4 0.00027 21.0 0.1 2.8 2 1 1 3 3 3 2 Chemotaxis phosphatase CheX CheW PF01584.19 gi|154150879|ref|YP_001404497.1| - 1.9e-19 69.7 1.3 3.9e-19 68.7 1.3 1.6 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 gi|154150879|ref|YP_001404497.1| - 9.6e-19 67.4 0.7 3e-18 65.9 0.7 1.9 1 0 0 1 1 1 1 Hpt domain HATPase_c PF02518.26 gi|154150879|ref|YP_001404497.1| - 2.1e-18 66.9 0.1 6.9e-18 65.2 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P2 PF07194.11 gi|154150879|ref|YP_001404497.1| - 2.9e-18 65.7 0.5 9.5e-18 64.0 0.1 2.2 2 0 0 2 2 2 1 P2 response regulator binding domain H-kinase_dim PF02895.14 gi|154150879|ref|YP_001404497.1| - 2.8e-09 37.2 4.7 2.8e-09 37.2 4.7 1.9 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain TyeA PF09059.10 gi|154150879|ref|YP_001404497.1| - 0.073 13.2 0.6 0.39 10.9 0.5 2.2 2 0 0 2 2 2 0 TyeA DUF2175 PF09943.9 gi|154150879|ref|YP_001404497.1| - 2.2 8.6 5.0 1.3 9.3 1.8 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2175) CheB_methylest PF01339.17 gi|154150880|ref|YP_001404498.1| - 1.3e-55 187.7 0.6 1.6e-53 180.9 0.5 2.6 3 0 0 3 3 3 2 CheB methylesterase Response_reg PF00072.24 gi|154150880|ref|YP_001404498.1| - 7.9e-27 93.6 0.2 1.7e-26 92.6 0.2 1.6 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|154150881|ref|YP_001404499.1| - 6.1e-30 103.7 0.2 6.9e-30 103.5 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheF-arch PF04283.12 gi|154150882|ref|YP_001404500.1| - 4.7e-15 55.9 0.0 1.1e-14 54.7 0.0 1.5 1 1 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea T2SSF PF00482.23 gi|154150884|ref|YP_001404502.1| - 0.0016 18.4 0.1 0.0016 18.4 0.1 3.7 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F FMN_bind_2 PF04299.12 gi|154150884|ref|YP_001404502.1| - 0.092 12.5 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative FMN-binding domain DUF4690 PF15756.5 gi|154150884|ref|YP_001404502.1| - 5.6 7.6 7.8 4.7 7.9 0.3 3.3 3 0 0 3 3 3 0 Small Novel Rich in Cartilage T2SSE PF00437.20 gi|154150885|ref|YP_001404503.1| - 9.4e-45 152.8 0.0 1.5e-44 152.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|154150885|ref|YP_001404503.1| - 0.00065 20.2 0.0 0.0016 18.9 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|154150885|ref|YP_001404503.1| - 0.0013 18.4 0.0 0.0035 17.1 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain PIF1 PF05970.14 gi|154150885|ref|YP_001404503.1| - 0.011 15.0 0.0 0.033 13.4 0.0 1.7 2 0 0 2 2 2 0 PIF1-like helicase AAA_16 PF13191.6 gi|154150885|ref|YP_001404503.1| - 0.016 15.6 0.0 0.032 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|154150885|ref|YP_001404503.1| - 0.037 14.5 0.5 0.078 13.5 0.5 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|154150885|ref|YP_001404503.1| - 0.085 12.1 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.23 gi|154150885|ref|YP_001404503.1| - 0.11 12.5 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATPase PF06745.13 gi|154150886|ref|YP_001404504.1| - 1.8e-24 86.4 0.3 2.2e-24 86.1 0.3 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|154150886|ref|YP_001404504.1| - 8.1e-08 31.8 1.5 7.5e-06 25.3 0.2 2.2 1 1 1 2 2 2 2 PAXNEB protein Rad51 PF08423.11 gi|154150886|ref|YP_001404504.1| - 2.8e-06 26.8 0.2 8e-06 25.3 0.2 1.8 1 1 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|154150886|ref|YP_001404504.1| - 0.00051 19.4 0.0 0.00077 18.9 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|154150886|ref|YP_001404504.1| - 0.022 14.3 0.0 0.044 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain RecA PF00154.21 gi|154150886|ref|YP_001404504.1| - 0.024 14.1 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein DUF835 PF05763.12 gi|154150886|ref|YP_001404504.1| - 0.025 14.3 0.2 0.038 13.7 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF835) Elong_Iki1 PF10483.9 gi|154150886|ref|YP_001404504.1| - 0.1 12.1 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 Arch_flagellin PF01917.16 gi|154150887|ref|YP_001404505.1| - 6.3e-10 39.5 6.8 8.3e-10 39.1 6.8 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin SieB PF14163.6 gi|154150887|ref|YP_001404505.1| - 0.0046 16.4 0.1 0.0065 16.0 0.1 1.2 1 0 0 1 1 1 1 Super-infection exclusion protein B 7TMR-DISMED2 PF07696.11 gi|154150887|ref|YP_001404505.1| - 0.027 14.5 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 7TMR-DISM extracellular 2 TAP35_44 PF07265.11 gi|154150887|ref|YP_001404505.1| - 0.027 14.5 0.1 0.039 14.0 0.1 1.2 1 0 0 1 1 1 0 Tapetum specific protein TAP35/TAP44 Monooxygenase_B PF04744.12 gi|154150887|ref|YP_001404505.1| - 0.03 13.2 0.2 0.041 12.7 0.2 1.2 1 0 0 1 1 1 0 Monooxygenase subunit B protein CARDB PF07705.11 gi|154150887|ref|YP_001404505.1| - 0.031 14.5 0.2 0.073 13.3 0.1 1.8 1 1 0 1 1 1 0 CARDB YrhC PF14143.6 gi|154150887|ref|YP_001404505.1| - 0.15 12.2 0.2 0.25 11.5 0.2 1.3 1 0 0 1 1 1 0 YrhC-like protein Bac_export_3 PF01313.19 gi|154150887|ref|YP_001404505.1| - 0.21 11.5 4.2 0.37 10.7 4.2 1.3 1 0 0 1 1 1 0 Bacterial export proteins, family 3 Arch_flagellin PF01917.16 gi|154150888|ref|YP_001404506.1| - 3e-13 50.3 2.0 3.8e-13 50.0 2.0 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_fla_DE PF04659.13 gi|154150889|ref|YP_001404507.1| - 0.009 15.9 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein DUF4407 PF14362.6 gi|154150889|ref|YP_001404507.1| - 0.056 12.8 0.5 0.079 12.3 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) CLZ PF16526.5 gi|154150889|ref|YP_001404507.1| - 0.061 13.7 1.8 0.064 13.6 0.1 1.9 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF4719 PF15843.5 gi|154150889|ref|YP_001404507.1| - 0.14 12.3 0.2 0.99 9.5 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4719) Arch_flagellin PF01917.16 gi|154150890|ref|YP_001404508.1| - 7.1e-41 140.1 6.0 8.2e-41 139.9 6.0 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|154150891|ref|YP_001404509.1| - 2.9e-41 141.4 5.9 3.3e-41 141.2 5.9 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin eIF-5a PF01287.20 gi|154150893|ref|YP_001404511.1| - 1.2e-06 28.5 0.2 2e-06 27.8 0.2 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|154150893|ref|YP_001404511.1| - 0.00047 20.1 0.1 0.0026 17.7 0.1 2.0 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain BRK PF07533.16 gi|154150893|ref|YP_001404511.1| - 0.068 12.8 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 BRK domain Inositol_P PF00459.25 gi|154150894|ref|YP_001404512.1| - 2.6e-30 105.9 0.0 3.1e-30 105.6 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|154150894|ref|YP_001404512.1| - 0.0044 16.5 0.0 0.0066 16.0 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain NAD_kinase PF01513.21 gi|154150895|ref|YP_001404513.1| - 1.3e-53 182.1 0.0 1.6e-53 181.9 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|154150895|ref|YP_001404513.1| - 0.036 13.7 0.1 0.062 12.9 0.1 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain CHASE4 PF05228.13 gi|154150895|ref|YP_001404513.1| - 0.12 12.6 0.0 0.32 11.2 0.0 1.6 2 0 0 2 2 2 0 CHASE4 domain ACT PF01842.25 gi|154150896|ref|YP_001404514.1| - 0.00011 21.9 0.2 0.00034 20.3 0.0 1.8 2 0 0 2 2 2 1 ACT domain Saccharop_dh_N PF04455.12 gi|154150896|ref|YP_001404514.1| - 0.0049 17.2 0.2 0.013 15.9 0.1 1.7 2 0 0 2 2 2 1 LOR/SDH bifunctional enzyme conserved region Homoserine_dh PF00742.19 gi|154150897|ref|YP_001404515.1| - 1e-52 178.6 0.1 1.5e-52 178.0 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|154150897|ref|YP_001404515.1| - 3.1e-09 37.5 0.1 7.6e-09 36.2 0.1 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|154150897|ref|YP_001404515.1| - 0.015 15.1 0.2 0.026 14.3 0.2 1.4 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HTH_IclR PF09339.10 gi|154150898|ref|YP_001404516.1| - 9.8e-06 25.3 0.3 0.00078 19.2 0.0 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|154150898|ref|YP_001404516.1| - 2.9e-05 23.9 0.0 6.3e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_42 PF06224.12 gi|154150898|ref|YP_001404516.1| - 0.015 14.9 0.3 0.029 13.9 0.3 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mnd1 PF03962.15 gi|154150898|ref|YP_001404516.1| - 0.039 14.2 0.0 0.1 12.9 0.0 1.7 2 0 0 2 2 2 0 Mnd1 HTH domain MarR_2 PF12802.7 gi|154150898|ref|YP_001404516.1| - 0.044 13.7 0.1 0.1 12.5 0.1 1.6 1 0 0 1 1 1 0 MarR family HTH_43 PF09904.9 gi|154150898|ref|YP_001404516.1| - 0.05 13.6 0.0 0.092 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|154150898|ref|YP_001404516.1| - 0.095 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4218 PF13960.6 gi|154150898|ref|YP_001404516.1| - 0.1 12.2 0.0 5.3 6.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4218) MarR PF01047.22 gi|154150898|ref|YP_001404516.1| - 0.18 11.8 0.0 0.37 10.7 0.0 1.5 1 0 0 1 1 1 0 MarR family GATase PF00117.28 gi|154150899|ref|YP_001404517.1| - 8.4e-18 64.8 0.0 1.1e-17 64.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|154150899|ref|YP_001404517.1| - 4.2e-07 29.9 0.1 1.4e-06 28.3 0.1 1.9 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 gi|154150899|ref|YP_001404517.1| - 0.011 15.3 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|154150899|ref|YP_001404517.1| - 0.092 12.5 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family Pilin_N PF07790.11 gi|154150900|ref|YP_001404518.1| - 2.6e-10 41.0 8.2 4.2e-10 40.4 8.2 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal SurA_N_3 PF13624.6 gi|154150900|ref|YP_001404518.1| - 0.41 10.4 2.3 0.57 9.9 2.3 1.2 1 0 0 1 1 1 0 SurA N-terminal domain Response_reg PF00072.24 gi|154150901|ref|YP_001404519.1| - 4.4e-23 81.6 0.1 8.6e-23 80.7 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain TPR_1 PF00515.28 gi|154150901|ref|YP_001404519.1| - 1.1e-19 69.3 0.1 1.4e-09 37.4 0.0 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154150901|ref|YP_001404519.1| - 4.3e-18 63.9 0.4 2.1e-08 33.7 0.0 3.8 4 0 0 4 4 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154150901|ref|YP_001404519.1| - 7.8e-16 57.5 0.0 3.3e-09 36.3 0.0 2.5 1 1 1 2 2 2 2 TPR repeat TPR_8 PF13181.6 gi|154150901|ref|YP_001404519.1| - 3.5e-14 51.7 0.1 1.7e-06 27.8 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|154150901|ref|YP_001404519.1| - 3.9e-13 48.8 0.0 8.9e-05 22.6 0.0 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154150901|ref|YP_001404519.1| - 8.3e-13 48.4 0.2 6e-09 36.1 0.1 2.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154150901|ref|YP_001404519.1| - 8.5e-09 35.9 0.0 3.4e-06 27.6 0.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154150901|ref|YP_001404519.1| - 2.1e-07 31.2 1.9 0.0049 17.6 0.0 4.0 3 1 2 5 5 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154150901|ref|YP_001404519.1| - 2.2e-07 31.3 0.3 0.00013 22.4 0.0 2.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|154150901|ref|YP_001404519.1| - 4.1e-07 29.7 0.2 0.27 11.1 0.1 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154150901|ref|YP_001404519.1| - 8.7e-07 28.6 0.0 0.013 15.5 0.0 3.1 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|154150901|ref|YP_001404519.1| - 1.2e-06 28.8 0.0 0.038 14.6 0.0 3.9 3 0 0 3 3 3 1 Tetratricopeptide repeat PAS_9 PF13426.7 gi|154150901|ref|YP_001404519.1| - 3.1e-06 27.4 0.0 6.1e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|154150901|ref|YP_001404519.1| - 3.7e-06 26.9 0.1 1.2e-05 25.2 0.1 1.9 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|154150901|ref|YP_001404519.1| - 0.0001 22.2 0.1 0.00041 20.3 0.1 2.0 2 0 0 2 2 2 1 PAS domain TPR_9 PF13371.6 gi|154150901|ref|YP_001404519.1| - 0.0014 18.7 0.0 0.005 17.0 0.0 1.9 1 1 1 2 2 2 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|154150901|ref|YP_001404519.1| - 0.0016 18.6 0.0 0.0059 16.8 0.0 1.9 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 FAT PF02259.23 gi|154150901|ref|YP_001404519.1| - 0.0017 17.6 0.1 0.0028 16.9 0.1 1.3 1 0 0 1 1 1 1 FAT domain SHNi-TPR PF10516.9 gi|154150901|ref|YP_001404519.1| - 0.0028 17.1 2.0 0.0029 17.0 0.0 2.1 3 0 0 3 3 2 1 SHNi-TPR DUF3856 PF12968.7 gi|154150901|ref|YP_001404519.1| - 0.0063 16.6 0.3 0.73 9.9 0.2 2.9 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) PAS_4 PF08448.10 gi|154150901|ref|YP_001404519.1| - 0.0086 16.3 0.0 0.032 14.5 0.0 1.9 1 1 0 1 1 1 1 PAS fold TPR_21 PF09976.9 gi|154150901|ref|YP_001404519.1| - 0.014 15.1 0.2 0.94 9.2 0.2 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat-like domain NARP1 PF12569.8 gi|154150901|ref|YP_001404519.1| - 0.025 13.5 0.1 0.07 12.0 0.1 1.7 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 LXG PF04740.12 gi|154150901|ref|YP_001404519.1| - 0.025 14.3 0.6 0.055 13.2 0.1 1.7 2 0 0 2 2 2 0 LXG domain of WXG superfamily Glyco_hydro_67M PF07488.12 gi|154150901|ref|YP_001404519.1| - 0.055 12.6 0.0 0.091 11.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 67 middle domain MIT PF04212.18 gi|154150901|ref|YP_001404519.1| - 0.1 12.7 0.0 15 5.8 0.0 2.6 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain PAS_4 PF08448.10 gi|154150902|ref|YP_001404520.1| - 6e-30 103.7 0.0 1.3e-15 57.6 0.0 3.5 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|154150902|ref|YP_001404520.1| - 1.7e-24 86.0 0.0 2.7e-07 30.8 0.0 3.6 3 0 0 3 3 3 3 PAS domain HisKA_2 PF07568.12 gi|154150902|ref|YP_001404520.1| - 4.8e-24 84.2 2.6 4.8e-24 84.2 2.6 2.1 2 0 0 2 2 2 1 Histidine kinase PAS PF00989.25 gi|154150902|ref|YP_001404520.1| - 2.6e-16 59.6 0.0 0.00019 21.4 0.0 3.8 3 1 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|154150902|ref|YP_001404520.1| - 1.2e-12 48.0 0.0 3.1e-11 43.4 0.0 3.1 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|154150902|ref|YP_001404520.1| - 6.9e-08 32.3 0.0 0.00028 20.8 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|154150902|ref|YP_001404520.1| - 1.2e-07 32.2 0.0 4.7e-07 30.3 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|154150902|ref|YP_001404520.1| - 1.5e-05 24.9 0.0 3.8e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|154150902|ref|YP_001404520.1| - 0.00092 19.9 1.7 0.0023 18.6 0.1 2.2 2 0 0 2 2 2 1 HWE histidine kinase PAS_11 PF14598.6 gi|154150902|ref|YP_001404520.1| - 0.0059 16.7 0.0 0.034 14.3 0.0 2.3 1 1 1 2 2 2 1 PAS domain HATPase_c_3 PF13589.6 gi|154150902|ref|YP_001404520.1| - 0.017 15.0 0.0 0.04 13.7 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4140 PF13600.6 gi|154150902|ref|YP_001404520.1| - 0.019 15.4 1.0 0.039 14.4 0.2 2.0 2 0 0 2 2 1 0 N-terminal domain of unknown function (DUF4140) FlgN PF05130.12 gi|154150902|ref|YP_001404520.1| - 0.13 12.8 4.3 0.86 10.1 1.1 2.9 3 0 0 3 3 3 0 FlgN protein UPF0242 PF06785.11 gi|154150902|ref|YP_001404520.1| - 0.15 12.2 2.4 5.8 7.0 0.2 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus DUF4201 PF13870.6 gi|154150902|ref|YP_001404520.1| - 1.1 8.9 7.9 3.7 7.3 2.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4201) HisKA_2 PF07568.12 gi|154150903|ref|YP_001404521.1| - 2.8e-23 81.8 1.0 2.8e-23 81.8 1.0 2.3 2 0 0 2 2 2 1 Histidine kinase Response_reg PF00072.24 gi|154150903|ref|YP_001404521.1| - 2.1e-20 72.9 0.0 7e-20 71.3 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.25 gi|154150903|ref|YP_001404521.1| - 1.5e-11 44.3 0.1 3.9e-11 42.9 0.1 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|154150903|ref|YP_001404521.1| - 2.8e-10 40.4 0.0 1.8e-09 37.8 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|154150903|ref|YP_001404521.1| - 3e-10 40.2 0.0 8.8e-10 38.7 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|154150903|ref|YP_001404521.1| - 9e-10 38.8 0.1 2.1e-09 37.6 0.1 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|154150903|ref|YP_001404521.1| - 6.4e-07 29.9 0.1 3.8e-06 27.4 0.1 2.2 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|154150903|ref|YP_001404521.1| - 1.5e-05 24.9 0.0 3.8e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|154150903|ref|YP_001404521.1| - 5.2e-05 23.2 0.0 0.00023 21.1 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|154150903|ref|YP_001404521.1| - 0.0013 19.4 0.0 0.0033 18.1 0.0 1.7 1 0 0 1 1 1 1 HWE histidine kinase Methyltransf_19 PF04672.12 gi|154150903|ref|YP_001404521.1| - 0.075 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl methyltransferase DUF222 PF02720.17 gi|154150903|ref|YP_001404521.1| - 0.11 11.9 0.2 0.17 11.3 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF222) HATPase_c_3 PF13589.6 gi|154150903|ref|YP_001404521.1| - 0.18 11.6 0.0 0.38 10.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Telomere_Sde2_2 PF13297.6 gi|154150904|ref|YP_001404522.1| - 0.12 12.1 0.2 0.22 11.2 0.2 1.3 1 0 0 1 1 1 0 Telomere stability C-terminal HTH_24 PF13412.6 gi|154150905|ref|YP_001404523.1| - 0.00021 20.8 0.1 0.00043 19.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|154150905|ref|YP_001404523.1| - 0.00098 19.0 0.1 0.0029 17.5 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|154150905|ref|YP_001404523.1| - 0.008 16.0 0.1 0.017 14.9 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain PAS_9 PF13426.7 gi|154150905|ref|YP_001404523.1| - 0.0099 16.1 0.0 0.023 14.9 0.0 1.6 1 0 0 1 1 1 1 PAS domain HTH_10 PF04967.12 gi|154150905|ref|YP_001404523.1| - 0.011 15.5 0.0 0.023 14.5 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_3 PF01381.22 gi|154150905|ref|YP_001404523.1| - 0.019 15.0 0.2 0.1 12.7 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix Sulfolobus_pRN PF05584.11 gi|154150905|ref|YP_001404523.1| - 0.035 14.2 0.0 0.091 12.8 0.0 1.7 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_psq PF05225.16 gi|154150905|ref|YP_001404523.1| - 0.053 13.3 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_26 PF13443.6 gi|154150905|ref|YP_001404523.1| - 0.074 13.5 0.3 0.2 12.1 0.0 1.9 2 0 0 2 2 1 0 Cro/C1-type HTH DNA-binding domain HTH_35 PF13693.6 gi|154150905|ref|YP_001404523.1| - 0.084 12.9 0.1 0.29 11.2 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NUMOD1 PF07453.13 gi|154150905|ref|YP_001404523.1| - 0.098 12.9 0.1 0.18 12.1 0.1 1.5 1 0 0 1 1 1 0 NUMOD1 domain Rrf2 PF02082.20 gi|154150905|ref|YP_001404523.1| - 0.1 12.9 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.7 gi|154150905|ref|YP_001404523.1| - 0.15 12.0 0.0 0.38 10.7 0.0 1.6 1 0 0 1 1 1 0 MarR family GP3_package PF16677.5 gi|154150905|ref|YP_001404523.1| - 0.15 12.2 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 DNA-packaging protein gp3 Lectin_N PF03954.14 gi|154150906|ref|YP_001404524.1| - 0.3 10.8 0.0 0.3 10.8 0.0 2.0 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain LapA_dom PF06305.11 gi|154150906|ref|YP_001404524.1| - 0.73 9.7 0.0 0.73 9.7 0.0 3.6 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain DUF35_N PF12172.8 gi|154150907|ref|YP_001404525.1| - 0.011 15.6 1.8 0.021 14.7 1.8 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|154150907|ref|YP_001404525.1| - 0.012 15.3 3.8 1.7 8.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|154150907|ref|YP_001404525.1| - 0.063 13.3 0.5 0.12 12.4 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|154150907|ref|YP_001404525.1| - 0.063 13.3 4.8 1.5 8.8 0.1 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2089 PF09862.9 gi|154150907|ref|YP_001404525.1| - 0.066 13.2 0.2 0.12 12.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) zf-ISL3 PF14690.6 gi|154150907|ref|YP_001404525.1| - 0.1 13.3 0.9 22 5.8 0.0 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.6 gi|154150907|ref|YP_001404525.1| - 0.11 12.0 6.2 0.64 9.5 6.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|154150907|ref|YP_001404525.1| - 0.14 12.1 4.6 0.4 10.6 0.1 2.6 3 0 0 3 3 3 0 zinc-finger of a C2HC-type zf-RING_7 PF02591.15 gi|154150907|ref|YP_001404525.1| - 0.25 11.6 3.8 1.1 9.4 0.3 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-C2H2_4 PF13894.6 gi|154150907|ref|YP_001404525.1| - 0.3 12.0 2.1 14 6.8 0.3 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger Lar_restr_allev PF14354.6 gi|154150907|ref|YP_001404525.1| - 0.35 11.3 0.9 32 5.0 0.1 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar Ogr_Delta PF04606.12 gi|154150907|ref|YP_001404525.1| - 3 7.9 5.3 14 5.8 0.2 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Cys_rich_CPXG PF14255.6 gi|154150907|ref|YP_001404525.1| - 3.1 7.8 6.6 7.8 6.5 0.5 2.3 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-Di19 PF05605.12 gi|154150907|ref|YP_001404525.1| - 3.2 8.1 5.3 17 5.8 0.7 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF4131 PF13567.6 gi|154150907|ref|YP_001404525.1| - 5.3 6.7 15.2 1.2 8.7 1.0 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF2975 PF11188.8 gi|154150907|ref|YP_001404525.1| - 7.4 6.5 11.2 3.2 7.6 7.5 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2975) zf-CCHC_5 PF14787.6 gi|154150907|ref|YP_001404525.1| - 8.3 6.2 8.3 39 4.0 0.1 3.2 3 0 0 3 3 3 0 GAG-polyprotein viral zinc-finger zf-NADH-PPase PF09297.11 gi|154150907|ref|YP_001404525.1| - 8.4 6.1 6.3 19 5.0 0.9 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|154150907|ref|YP_001404525.1| - 9.8 6.4 6.7 1.1e+02 3.0 6.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain K_trans PF02705.16 gi|154150908|ref|YP_001404526.1| - 1.6e-162 541.8 37.4 1.8e-162 541.6 37.4 1.0 1 0 0 1 1 1 1 K+ potassium transporter DUF4866 PF16160.5 gi|154150908|ref|YP_001404526.1| - 0.15 11.3 0.1 0.5 9.6 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4866) AI-2E_transport PF01594.16 gi|154150909|ref|YP_001404527.1| - 5.1e-27 94.9 47.4 6.6e-27 94.5 47.4 1.1 1 0 0 1 1 1 1 AI-2E family transporter TrkH PF02386.16 gi|154150910|ref|YP_001404528.1| - 4.7e-44 150.7 22.9 9.5e-44 149.7 22.9 1.4 1 1 0 1 1 1 1 Cation transport protein RACo_C_ter PF14574.6 gi|154150911|ref|YP_001404529.1| - 2.2e-85 285.8 0.5 5e-84 281.4 0.0 2.2 2 0 0 2 2 2 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|154150911|ref|YP_001404529.1| - 8.2e-51 171.9 0.2 1.2e-50 171.3 0.2 1.3 1 0 0 1 1 1 1 RACo middle region Fer2 PF00111.27 gi|154150911|ref|YP_001404529.1| - 8.9e-09 35.2 1.2 1.9e-08 34.2 1.2 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain CdhD PF03599.16 gi|154150912|ref|YP_001404530.1| - 6.4e-125 416.8 0.0 7.7e-125 416.6 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|154150912|ref|YP_001404530.1| - 7.7e-15 54.3 3.4 7.7e-15 54.3 3.4 1.8 2 0 0 2 2 2 1 Putative Fe-S cluster Phage_sheath_1 PF04984.14 gi|154150912|ref|YP_001404530.1| - 0.21 11.5 0.7 1.4 8.8 0.0 2.3 2 1 1 3 3 3 0 Phage tail sheath protein subtilisin-like domain CdhD PF03599.16 gi|154150913|ref|YP_001404531.1| - 1.8e-55 188.3 0.1 1e-54 185.7 0.1 1.9 1 1 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit CdhC PF03598.15 gi|154150914|ref|YP_001404532.1| - 4.2e-64 215.1 0.4 5.6e-64 214.7 0.4 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CO_dh PF02552.16 gi|154150915|ref|YP_001404533.1| - 3.1e-22 79.1 0.0 4.1e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|154150915|ref|YP_001404533.1| - 0.072 12.8 0.0 0.22 11.3 0.0 1.9 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.20 gi|154150916|ref|YP_001404534.1| - 4e-93 312.9 11.9 5.5e-81 272.8 0.4 2.0 2 0 0 2 2 2 2 Prismane/CO dehydrogenase family Fer4_9 PF13187.6 gi|154150916|ref|YP_001404534.1| - 1.4e-07 31.5 7.8 1.4e-07 31.5 7.8 2.8 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150916|ref|YP_001404534.1| - 3e-06 27.3 8.6 3e-06 27.3 8.6 2.6 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154150916|ref|YP_001404534.1| - 8.8e-06 26.2 15.1 0.00038 21.0 0.5 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154150916|ref|YP_001404534.1| - 0.00014 22.7 3.9 0.11 13.4 0.2 2.9 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|154150916|ref|YP_001404534.1| - 0.00047 20.7 14.3 0.0021 18.6 12.5 3.0 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154150916|ref|YP_001404534.1| - 0.00047 20.5 2.0 0.011 16.1 0.2 2.9 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|154150916|ref|YP_001404534.1| - 0.0028 18.5 6.5 0.011 16.5 1.0 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|154150916|ref|YP_001404534.1| - 0.003 17.3 10.5 0.0074 16.1 2.1 3.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154150916|ref|YP_001404534.1| - 0.0036 17.3 13.5 0.23 11.6 3.6 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|154150916|ref|YP_001404534.1| - 0.0099 16.1 7.2 0.11 12.7 7.2 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|154150916|ref|YP_001404534.1| - 0.012 15.4 0.7 0.012 15.4 0.7 2.5 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CODH_A_N PF18537.1 gi|154150916|ref|YP_001404534.1| - 0.014 15.4 0.0 0.031 14.3 0.0 1.6 1 0 0 1 1 1 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain Fer4_4 PF12800.7 gi|154150916|ref|YP_001404534.1| - 0.027 15.0 20.5 0.16 12.5 4.3 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain CBP_BcsQ PF06564.12 gi|154150917|ref|YP_001404535.1| - 1.7e-07 31.0 0.0 0.011 15.2 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_31 PF13614.6 gi|154150917|ref|YP_001404535.1| - 1.8e-07 31.3 0.0 3e-07 30.5 0.0 1.3 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|154150917|ref|YP_001404535.1| - 9.7e-06 25.7 0.0 4.1e-05 23.6 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|154150917|ref|YP_001404535.1| - 0.00063 19.0 0.0 0.00094 18.4 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|154150917|ref|YP_001404535.1| - 0.0016 17.9 0.0 0.44 10.0 0.0 2.6 3 0 0 3 3 3 2 NUBPL iron-transfer P-loop NTPase CLP1_P PF16575.5 gi|154150917|ref|YP_001404535.1| - 0.15 11.8 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|154150918|ref|YP_001404536.1| - 5.2e-15 55.6 0.0 1.3e-14 54.4 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|154150918|ref|YP_001404536.1| - 1.8e-09 37.4 0.1 0.00016 21.2 0.1 2.6 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|154150918|ref|YP_001404536.1| - 1.9e-06 27.6 0.0 0.013 15.0 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|154150918|ref|YP_001404536.1| - 2.5e-05 23.6 0.2 3.6e-05 23.1 0.2 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|154150918|ref|YP_001404536.1| - 4.3e-05 23.5 0.0 7.4e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|154150918|ref|YP_001404536.1| - 0.0091 15.5 0.0 0.65 9.4 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 gi|154150918|ref|YP_001404536.1| - 0.058 13.1 0.0 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|154150918|ref|YP_001404536.1| - 0.074 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_26 PF13500.6 gi|154150918|ref|YP_001404536.1| - 0.09 12.6 0.3 0.19 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|154150918|ref|YP_001404536.1| - 0.24 10.9 2.3 0.53 9.8 0.2 2.4 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|154150918|ref|YP_001404536.1| - 2 8.5 4.3 1.8 8.6 0.6 2.2 2 1 0 2 2 2 0 Helicase HerA, central domain TraB PF01963.17 gi|154150919|ref|YP_001404537.1| - 1e-24 87.9 0.1 1.4e-24 87.4 0.1 1.1 1 0 0 1 1 1 1 TraB family HI0933_like PF03486.14 gi|154150921|ref|YP_001404539.1| - 1e-112 376.8 0.0 1.2e-112 376.7 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|154150921|ref|YP_001404539.1| - 4.4e-11 42.6 0.0 0.00077 18.8 0.0 3.0 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|154150921|ref|YP_001404539.1| - 2.5e-08 33.4 0.1 0.00078 18.6 0.1 2.5 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|154150921|ref|YP_001404539.1| - 1.7e-06 27.9 0.5 0.0058 16.2 0.1 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|154150921|ref|YP_001404539.1| - 2.8e-05 23.5 0.1 0.00053 19.3 0.0 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|154150921|ref|YP_001404539.1| - 6e-05 22.3 0.7 0.22 10.6 0.2 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|154150921|ref|YP_001404539.1| - 0.00048 20.3 0.1 0.0013 18.9 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|154150921|ref|YP_001404539.1| - 0.00053 19.5 0.0 0.0006 19.3 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|154150921|ref|YP_001404539.1| - 0.0046 16.2 0.0 0.0074 15.6 0.0 1.3 1 0 0 1 1 1 1 Thi4 family Glyco_transf_9 PF01075.17 gi|154150921|ref|YP_001404539.1| - 0.2 11.0 0.0 0.3 10.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 9 (heptosyltransferase) DUF1922 PF09082.10 gi|154150922|ref|YP_001404540.1| - 2.3e-05 24.6 0.0 3.2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) NOB1_Zn_bind PF08772.11 gi|154150922|ref|YP_001404540.1| - 0.0073 16.4 0.3 0.011 15.8 0.3 1.4 1 1 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like UPF0547 PF10571.9 gi|154150922|ref|YP_001404540.1| - 0.013 15.6 4.5 0.41 10.8 0.4 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.11 gi|154150922|ref|YP_001404540.1| - 0.019 14.6 1.6 2 8.1 0.1 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|154150922|ref|YP_001404540.1| - 0.035 14.0 0.3 3.1 7.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|154150922|ref|YP_001404540.1| - 0.035 13.9 3.0 0.33 10.8 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|154150922|ref|YP_001404540.1| - 0.049 13.0 0.1 3 7.3 0.0 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger RRF_GI PF12614.8 gi|154150922|ref|YP_001404540.1| - 0.065 13.4 0.0 0.073 13.2 0.0 1.1 1 0 0 1 1 1 0 Ribosome recycling factor Zn-ribbon_8 PF09723.10 gi|154150922|ref|YP_001404540.1| - 0.15 12.2 4.7 0.75 10.0 4.7 2.3 1 1 0 1 1 1 0 Zinc ribbon domain Skp1 PF01466.19 gi|154150922|ref|YP_001404540.1| - 0.15 12.2 0.1 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 Skp1 family, dimerisation domain F420_ligase PF01996.16 gi|154150923|ref|YP_001404541.1| - 4.6e-51 173.5 0.0 5.3e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Amidohydro_1 PF01979.20 gi|154150924|ref|YP_001404542.1| - 1.4e-10 41.1 0.2 5.8e-07 29.1 0.2 2.8 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|154150924|ref|YP_001404542.1| - 4.4e-09 36.1 0.0 7e-09 35.5 0.0 1.3 1 1 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|154150924|ref|YP_001404542.1| - 0.03 13.8 1.4 0.089 12.2 0.0 1.9 1 1 0 2 2 2 0 Amidohydrolase family Usp PF00582.26 gi|154150925|ref|YP_001404543.1| - 2.3e-32 112.4 0.3 2.6e-32 112.3 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Oxidored_nitro PF00148.19 gi|154150925|ref|YP_001404543.1| - 0.054 12.2 0.0 0.056 12.2 0.0 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase CBS PF00571.28 gi|154150926|ref|YP_001404544.1| - 1.1e-43 147.4 9.9 1.6e-15 57.3 0.2 4.1 4 0 0 4 4 4 4 CBS domain AAA_lid_2 PF17863.1 gi|154150926|ref|YP_001404544.1| - 0.032 14.1 0.2 0.063 13.1 0.2 1.4 1 0 0 1 1 1 0 AAA lid domain Peptidase_S55 PF05580.12 gi|154150926|ref|YP_001404544.1| - 0.034 14.1 0.0 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 SpoIVB peptidase S55 SNURF PF07192.11 gi|154150926|ref|YP_001404544.1| - 0.04 13.7 0.0 0.09 12.6 0.0 1.5 1 0 0 1 1 1 0 SNURF/RPN4 protein Proteasome PF00227.26 gi|154150927|ref|YP_001404545.1| - 3.8e-58 196.1 1.6 4.6e-58 195.8 1.6 1.1 1 0 0 1 1 1 1 Proteasome subunit RRF_GI PF12614.8 gi|154150927|ref|YP_001404545.1| - 0.12 12.5 0.1 0.27 11.4 0.1 1.6 1 1 0 1 1 1 0 Ribosome recycling factor KH_7 PF17214.3 gi|154150928|ref|YP_001404546.1| - 1.5e-26 92.2 2.7 8.9e-26 89.6 0.8 2.8 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|154150928|ref|YP_001404546.1| - 1.3e-22 80.1 0.0 2.6e-22 79.2 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|154150928|ref|YP_001404546.1| - 3.6e-17 62.1 0.0 7.9e-17 60.9 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|154150928|ref|YP_001404546.1| - 6.6e-14 51.8 0.0 1.1e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|154150928|ref|YP_001404546.1| - 8.7e-13 48.7 0.1 5.5e-09 36.3 0.0 2.4 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|154150928|ref|YP_001404546.1| - 4.8e-10 39.3 0.0 8.8e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|154150928|ref|YP_001404546.1| - 0.00014 21.6 0.1 0.00051 19.8 0.1 2.0 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.6 gi|154150928|ref|YP_001404546.1| - 0.00024 21.0 0.0 0.0005 20.0 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MFS_1 PF07690.16 gi|154150929|ref|YP_001404547.1| - 3.4e-30 105.2 59.4 6.5e-22 77.9 26.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|154150929|ref|YP_001404547.1| - 1.5e-06 27.4 11.4 1.5e-06 27.4 11.4 3.2 2 2 1 3 3 3 1 Sugar (and other) transporter TMP_2 PF06791.13 gi|154150929|ref|YP_001404547.1| - 0.058 13.1 0.7 0.14 11.9 0.7 1.6 1 0 0 1 1 1 0 Prophage tail length tape measure protein SLATT_5 PF18160.1 gi|154150929|ref|YP_001404547.1| - 0.072 12.4 0.1 0.18 11.1 0.1 1.6 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 OATP PF03137.20 gi|154150929|ref|YP_001404547.1| - 1.1 7.4 7.0 3.2 5.9 1.3 2.5 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family TPR_2 PF07719.17 gi|154150930|ref|YP_001404548.1| - 2.2e-31 105.4 10.2 9.8e-08 31.6 0.0 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|154150930|ref|YP_001404548.1| - 8e-30 101.4 14.5 1.3e-09 37.5 0.0 6.4 5 1 1 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154150930|ref|YP_001404548.1| - 7.2e-24 83.2 26.4 1.4e-08 34.3 0.1 6.4 2 2 4 6 6 6 6 TPR repeat TPR_8 PF13181.6 gi|154150930|ref|YP_001404548.1| - 8.6e-24 81.7 10.9 5.5e-06 26.2 0.0 6.3 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154150930|ref|YP_001404548.1| - 3.3e-17 62.8 14.0 3.1e-07 30.9 0.0 4.3 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154150930|ref|YP_001404548.1| - 1.7e-16 59.5 5.1 0.031 15.1 0.0 6.1 1 1 5 6 6 6 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154150930|ref|YP_001404548.1| - 2.3e-15 56.8 11.5 1.5e-05 25.4 0.2 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154150930|ref|YP_001404548.1| - 1.8e-14 52.6 4.2 0.034 14.2 0.0 6.2 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154150930|ref|YP_001404548.1| - 6.6e-13 48.6 0.5 0.0051 16.9 0.0 4.3 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154150930|ref|YP_001404548.1| - 5.6e-12 45.8 16.5 1.6e-05 25.1 0.0 5.3 1 1 5 6 6 6 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|154150930|ref|YP_001404548.1| - 3.6e-10 39.9 12.2 0.00014 22.0 3.1 3.8 1 1 3 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.17 gi|154150930|ref|YP_001404548.1| - 5.9e-07 30.0 3.4 0.078 13.4 0.2 3.3 2 1 1 3 3 3 2 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|154150930|ref|YP_001404548.1| - 1.5e-06 28.3 1.3 0.21 11.7 0.0 3.4 3 1 0 3 3 3 2 Domain of Unknown Function (DUF3856) TPR_17 PF13431.6 gi|154150930|ref|YP_001404548.1| - 4.1e-05 23.7 28.6 0.012 15.9 0.2 6.8 6 1 0 7 7 7 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|154150930|ref|YP_001404548.1| - 0.00029 19.9 5.2 0.0082 15.1 0.0 2.9 2 1 1 3 3 3 1 NMDA receptor-regulated protein 1 NRBF2_MIT PF17169.4 gi|154150930|ref|YP_001404548.1| - 0.0019 18.4 0.3 3.4 8.0 0.0 3.9 2 2 1 4 4 4 1 MIT domain of nuclear receptor-binding factor 2 TPR_6 PF13174.6 gi|154150930|ref|YP_001404548.1| - 0.0055 17.3 14.9 22 5.9 0.1 6.2 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|154150930|ref|YP_001404548.1| - 0.023 14.6 13.3 2.6 8.0 0.0 5.6 6 0 0 6 6 6 0 Tetratricopeptide repeat Paf67 PF10255.9 gi|154150930|ref|YP_001404548.1| - 0.046 12.7 0.4 7.9 5.4 0.0 2.6 1 1 0 2 2 2 0 RNA polymerase I-associated factor PAF67 MIT PF04212.18 gi|154150930|ref|YP_001404548.1| - 0.88 9.7 16.1 0.35 11.0 1.1 4.4 4 1 1 5 5 5 0 MIT (microtubule interacting and transport) domain TPR_4 PF07721.14 gi|154150930|ref|YP_001404548.1| - 1.4 9.7 7.2 30 5.6 0.0 4.5 5 0 0 5 5 5 0 Tetratricopeptide repeat Peptidase_M20 PF01546.28 gi|154150931|ref|YP_001404549.1| - 3.3e-34 118.4 0.0 4.8e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|154150931|ref|YP_001404549.1| - 1.1e-15 57.5 0.0 2.1e-15 56.6 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Radical_SAM PF04055.21 gi|154150933|ref|YP_001404551.1| - 6.6e-28 98.2 0.2 1.3e-27 97.3 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|154150933|ref|YP_001404551.1| - 4.2e-17 62.3 0.3 9.4e-17 61.1 0.3 1.6 1 1 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|154150933|ref|YP_001404551.1| - 1.6e-07 31.7 0.0 3e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|154150933|ref|YP_001404551.1| - 6e-07 29.6 0.0 1.6e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF3783 PF12646.7 gi|154150933|ref|YP_001404551.1| - 0.01 15.8 0.3 0.024 14.6 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) Mad3_BUB1_II PF08171.11 gi|154150933|ref|YP_001404551.1| - 0.14 12.4 0.1 0.35 11.0 0.1 1.6 1 0 0 1 1 1 0 Mad3/BUB1 homology region 2 FtsJ PF01728.19 gi|154150934|ref|YP_001404552.1| - 1.9e-48 164.9 0.0 2.1e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|154150934|ref|YP_001404552.1| - 3e-05 23.9 0.0 0.002 18.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154150934|ref|YP_001404552.1| - 0.00015 21.7 0.0 0.00083 19.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154150934|ref|YP_001404552.1| - 0.058 14.1 0.1 0.31 11.8 0.1 2.2 1 1 0 1 1 1 0 Methyltransferase domain PCNA_N PF00705.18 gi|154150935|ref|YP_001404553.1| - 4.8e-14 52.2 0.1 9e-14 51.3 0.1 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|154150935|ref|YP_001404553.1| - 7.1e-05 23.0 0.0 0.00062 19.9 0.0 2.2 1 1 1 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|154150935|ref|YP_001404553.1| - 0.0016 18.0 0.0 0.0019 17.7 0.0 1.3 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.16 gi|154150935|ref|YP_001404553.1| - 0.0084 15.2 0.1 0.51 9.4 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 PuR_N PF09182.10 gi|154150935|ref|YP_001404553.1| - 0.15 12.1 0.1 0.39 10.7 0.1 1.7 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal DNA_primase_lrg PF04104.14 gi|154150936|ref|YP_001404554.1| - 5.7e-28 98.1 0.1 2e-27 96.2 0.1 1.8 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit ThiP_synth PF10120.9 gi|154150937|ref|YP_001404555.1| - 6.4e-33 113.7 0.0 7.1e-33 113.5 0.0 1.1 1 0 0 1 1 1 1 Thiamine-phosphate synthase Ribosomal_S17e PF00833.18 gi|154150938|ref|YP_001404556.1| - 8.4e-08 32.2 0.3 8.5e-08 32.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.22 gi|154150939|ref|YP_001404557.1| - 3.9e-90 301.5 0.0 4.4e-90 301.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family RraA-like PF03737.15 gi|154150939|ref|YP_001404557.1| - 0.0091 16.2 0.4 0.028 14.6 0.4 1.9 1 1 1 2 2 2 1 Aldolase/RraA DapB_C PF05173.14 gi|154150940|ref|YP_001404558.1| - 5.2e-45 152.4 0.0 7.7e-45 151.8 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|154150940|ref|YP_001404558.1| - 4.8e-26 91.3 0.4 8.2e-26 90.6 0.4 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|154150940|ref|YP_001404558.1| - 0.043 14.7 0.2 0.086 13.7 0.2 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold RmlD_sub_bind PF04321.17 gi|154150940|ref|YP_001404558.1| - 0.081 12.0 0.1 0.12 11.5 0.1 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Semialdhyde_dh PF01118.24 gi|154150940|ref|YP_001404558.1| - 0.11 12.9 0.7 0.45 11.0 0.2 2.3 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Fer4 PF00037.27 gi|154150941|ref|YP_001404559.1| - 1.2e-16 59.7 14.6 2.3e-08 33.5 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154150941|ref|YP_001404559.1| - 4.1e-13 48.8 16.8 3.8e-07 29.9 3.7 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|154150941|ref|YP_001404559.1| - 5.4e-12 45.0 14.4 3.2e-06 26.9 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154150941|ref|YP_001404559.1| - 6.8e-12 45.8 29.9 1.3e-08 35.3 17.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154150941|ref|YP_001404559.1| - 1.8e-11 43.9 29.7 9.4e-09 35.3 16.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154150941|ref|YP_001404559.1| - 1.3e-10 41.2 14.8 1.6e-10 41.0 14.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154150941|ref|YP_001404559.1| - 9.1e-10 38.5 16.0 1.5e-09 37.8 16.0 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154150941|ref|YP_001404559.1| - 3e-09 37.7 14.3 5.6e-05 24.0 4.8 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|154150941|ref|YP_001404559.1| - 1.9e-08 34.1 14.4 0.00036 20.8 4.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|154150941|ref|YP_001404559.1| - 4.2e-06 27.2 15.6 0.0082 16.7 5.6 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|154150941|ref|YP_001404559.1| - 0.00015 22.2 16.3 0.034 14.7 3.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|154150941|ref|YP_001404559.1| - 0.00023 21.9 16.7 0.013 16.2 16.7 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|154150941|ref|YP_001404559.1| - 0.0003 21.2 16.2 0.19 12.2 16.2 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|154150941|ref|YP_001404559.1| - 0.00039 21.2 18.3 0.069 14.1 5.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|154150941|ref|YP_001404559.1| - 0.0017 19.1 11.8 0.072 13.9 1.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|154150941|ref|YP_001404559.1| - 0.0058 16.8 15.6 0.085 13.1 15.5 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|154150941|ref|YP_001404559.1| - 2.1 8.5 10.1 9.3 6.5 8.0 1.9 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Semialdhyde_dh PF01118.24 gi|154150942|ref|YP_001404560.1| - 4.1e-36 124.1 0.0 6.6e-36 123.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|154150942|ref|YP_001404560.1| - 1.7e-33 116.3 0.1 3.4e-33 115.3 0.0 1.5 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain NAD_binding_10 PF13460.6 gi|154150942|ref|YP_001404560.1| - 0.013 15.3 0.0 0.047 13.6 0.0 1.8 1 1 0 1 1 1 0 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|154150942|ref|YP_001404560.1| - 0.015 15.6 0.0 0.035 14.4 0.0 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|154150942|ref|YP_001404560.1| - 0.019 15.1 0.0 0.053 13.7 0.0 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.16 gi|154150942|ref|YP_001404560.1| - 0.035 14.8 0.0 0.093 13.5 0.0 1.7 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Alba PF01918.21 gi|154150943|ref|YP_001404561.1| - 1.7e-19 69.4 0.4 2.3e-19 69.0 0.4 1.2 1 0 0 1 1 1 1 Alba DUF3868 PF12984.7 gi|154150944|ref|YP_001404562.1| - 0.0046 16.8 0.0 0.0083 15.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function, B. Theta Gene description (DUF3868) DUF373 PF04123.13 gi|154150945|ref|YP_001404563.1| - 2.3e-121 405.4 15.9 2.7e-121 405.1 15.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) EI24 PF07264.11 gi|154150945|ref|YP_001404563.1| - 0.095 12.9 14.0 0.45 10.7 14.0 2.0 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Mobilization_B PF17511.2 gi|154150946|ref|YP_001404564.1| - 2.4 8.5 13.6 0.15 12.5 2.6 2.9 2 1 1 3 3 3 0 Mobilization protein B Tubulin PF00091.25 gi|154150947|ref|YP_001404565.1| - 1e-38 133.5 0.2 1.8e-38 132.7 0.2 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|154150947|ref|YP_001404565.1| - 1.9e-33 114.6 0.3 1.5e-32 111.8 0.1 2.4 2 0 0 2 2 2 1 FtsZ family, C-terminal domain AA_kinase PF00696.28 gi|154150947|ref|YP_001404565.1| - 0.0013 18.4 0.8 0.097 12.2 0.3 2.2 2 0 0 2 2 2 2 Amino acid kinase family RHH_1 PF01402.21 gi|154150948|ref|YP_001404566.1| - 1.1e-08 34.7 0.0 1.3e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|154150948|ref|YP_001404566.1| - 0.0081 16.3 0.0 0.0081 16.3 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|154150948|ref|YP_001404566.1| - 0.015 15.7 0.0 0.017 15.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VapB_antitoxin PF09957.9 gi|154150948|ref|YP_001404566.1| - 0.028 14.3 0.1 0.036 14.0 0.1 1.2 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB Aminotran_1_2 PF00155.21 gi|154150949|ref|YP_001404567.1| - 5.5e-36 124.5 0.0 9.9e-34 117.1 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class I and II NTP_transf_3 PF12804.7 gi|154150950|ref|YP_001404568.1| - 6.1e-17 62.4 0.0 6.5e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|154150950|ref|YP_001404568.1| - 2.5e-06 27.6 0.0 4.1e-06 26.9 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|154150950|ref|YP_001404568.1| - 0.00083 19.2 0.0 0.0024 17.6 0.0 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|154150950|ref|YP_001404568.1| - 0.0053 16.4 0.1 0.0086 15.7 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase Saccharop_dh_N PF04455.12 gi|154150951|ref|YP_001404569.1| - 1.5e-36 124.8 0.0 4e-36 123.4 0.0 1.7 2 0 0 2 2 2 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|154150951|ref|YP_001404569.1| - 0.012 15.3 0.2 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|154150951|ref|YP_001404569.1| - 0.029 13.6 0.2 0.43 9.8 0.1 2.6 3 0 0 3 3 3 0 Deoxyhypusine synthase ACT_5 PF13710.6 gi|154150951|ref|YP_001404569.1| - 0.082 12.8 0.0 13 5.7 0.0 2.8 3 0 0 3 3 3 0 ACT domain Radical_SAM_C PF16199.5 gi|154150952|ref|YP_001404570.1| - 0.037 14.0 0.1 0.084 12.9 0.0 1.6 2 0 0 2 2 2 0 Radical_SAM C-terminal domain CarboxypepD_reg PF13620.6 gi|154150953|ref|YP_001404571.1| - 6.9e-05 23.0 3.3 0.013 15.8 0.3 3.0 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain TRAP_beta PF05753.14 gi|154150953|ref|YP_001404571.1| - 0.0078 15.6 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) SdrD_B PF17210.3 gi|154150953|ref|YP_001404571.1| - 0.015 15.5 3.0 0.36 11.1 0.1 3.0 2 1 1 3 3 3 0 SdrD B-like domain DUF3244 PF11589.8 gi|154150953|ref|YP_001404571.1| - 0.19 11.8 1.7 24 5.1 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3244) HepII_C PF18675.1 gi|154150953|ref|YP_001404571.1| - 0.24 11.5 0.8 0.94 9.6 0.1 2.3 3 0 0 3 3 3 0 Heparinase II C-terminal domain HupF_HypC PF01455.18 gi|154150954|ref|YP_001404572.1| - 2.7e-21 75.5 0.2 3.1e-21 75.3 0.2 1.0 1 0 0 1 1 1 1 HupF/HypC family HypA PF01155.19 gi|154150955|ref|YP_001404573.1| - 6.4e-24 84.1 0.1 7.2e-24 84.0 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 gi|154150955|ref|YP_001404573.1| - 0.041 13.8 0.6 0.087 12.8 0.6 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon AIRS_C PF02769.22 gi|154150956|ref|YP_001404574.1| - 5.7e-31 107.8 3.0 9.2e-31 107.1 3.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|154150956|ref|YP_001404574.1| - 3.1e-15 56.6 2.9 8e-15 55.3 2.9 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain RimK PF08443.11 gi|154150956|ref|YP_001404574.1| - 0.14 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain DUF447 PF04289.12 gi|154150957|ref|YP_001404575.1| - 5.6e-53 179.3 0.1 6.3e-53 179.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) ACDC PF14733.6 gi|154150957|ref|YP_001404575.1| - 0.12 12.7 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 AP2-coincident C-terminal CitG PF01874.16 gi|154150958|ref|YP_001404576.1| - 5e-70 236.3 0.3 5.9e-70 236.1 0.3 1.1 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Dus PF01207.17 gi|154150959|ref|YP_001404577.1| - 3.6e-05 23.0 0.2 0.00018 20.7 0.2 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|154150959|ref|YP_001404577.1| - 0.0071 15.8 0.1 0.076 12.5 0.0 2.2 1 1 1 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|154150959|ref|YP_001404577.1| - 0.0094 15.0 0.7 0.013 14.5 0.7 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CbiX PF01903.17 gi|154150960|ref|YP_001404578.1| - 5.2e-24 84.6 0.0 5.9e-24 84.5 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|154150960|ref|YP_001404578.1| - 8.7e-06 25.2 0.0 9.1e-06 25.2 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|154150960|ref|YP_001404578.1| - 0.00072 18.7 0.0 0.00098 18.3 0.0 1.1 1 0 0 1 1 1 1 Ferrochelatase Mur_ligase_M PF08245.12 gi|154150961|ref|YP_001404579.1| - 7.9e-05 22.7 0.5 0.00012 22.1 0.5 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Oxidored_nitro PF00148.19 gi|154150962|ref|YP_001404580.1| - 1.1e-16 60.6 0.2 1.6e-16 60.1 0.2 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase GATase_3 PF07685.14 gi|154150963|ref|YP_001404581.1| - 1.3e-39 135.8 0.0 2e-39 135.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|154150963|ref|YP_001404581.1| - 1.2e-17 64.4 1.5 7.7e-12 45.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|154150963|ref|YP_001404581.1| - 8.8e-16 58.1 0.0 1.4e-15 57.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Prefoldin_2 PF01920.20 gi|154150963|ref|YP_001404581.1| - 0.27 11.2 0.0 0.47 10.4 0.0 1.3 1 0 0 1 1 1 0 Prefoldin subunit Aminotran_4 PF01063.19 gi|154150964|ref|YP_001404582.1| - 3.1e-56 190.7 0.0 4.1e-56 190.3 0.0 1.2 1 0 0 1 1 1 1 Amino-transferase class IV HNH_3 PF13392.6 gi|154150965|ref|YP_001404583.1| - 0.0011 18.7 2.3 0.0011 18.7 2.3 2.0 1 1 1 2 2 2 1 HNH endonuclease TPR_8 PF13181.6 gi|154150965|ref|YP_001404583.1| - 0.11 12.7 6.5 5.4 7.5 0.4 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat PSCyt1 PF07635.11 gi|154150965|ref|YP_001404583.1| - 0.27 11.8 1.2 2.2 8.9 0.3 2.9 3 0 0 3 3 3 0 Planctomycete cytochrome C HNH PF01844.23 gi|154150965|ref|YP_001404583.1| - 3.1 8.0 17.5 0.095 12.9 9.5 2.5 3 0 0 3 3 3 0 HNH endonuclease PKD PF00801.20 gi|154150966|ref|YP_001404584.1| - 2.8e-120 392.3 110.7 4.4e-14 52.1 3.3 11.9 11 0 0 11 11 11 11 PKD domain MG2 PF01835.19 gi|154150966|ref|YP_001404584.1| - 2.7e-06 27.7 20.9 8.5 6.9 0.1 9.0 6 2 4 11 11 11 4 MG2 domain YycI PF09648.10 gi|154150966|ref|YP_001404584.1| - 4.1e-06 26.6 0.0 6.5e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 YycH protein DUF2381 PF09544.10 gi|154150966|ref|YP_001404584.1| - 0.0029 17.2 0.8 44 3.5 0.0 5.0 5 0 0 5 5 5 0 Protein of unknown function (DUF2381) Wzt_C PF14524.6 gi|154150966|ref|YP_001404584.1| - 0.13 12.3 2.9 1.7e+02 2.2 0.0 5.7 6 0 0 6 6 6 0 Wzt C-terminal domain PKD_3 PF16820.5 gi|154150966|ref|YP_001404584.1| - 0.21 11.4 0.1 0.21 11.4 0.1 7.5 9 0 0 9 9 9 0 PKD-like domain DUF2064 PF09837.9 gi|154150967|ref|YP_001404585.1| - 0.028 14.2 8.8 10 5.9 0.1 6.0 7 0 0 7 7 7 0 Uncharacterized protein conserved in bacteria (DUF2064) Exotox-A_cataly PF09009.10 gi|154150967|ref|YP_001404585.1| - 6.2 6.5 6.0 9.2 6.0 0.1 3.5 3 1 0 4 4 4 0 Exotoxin A catalytic DUF350 PF03994.14 gi|154150969|ref|YP_001404587.1| - 3.5e-17 62.3 15.3 1.6e-09 37.7 4.3 3.7 2 2 3 5 5 5 2 Domain of Unknown Function (DUF350) Brr6_like_C_C PF10104.9 gi|154150969|ref|YP_001404587.1| - 0.16 11.7 6.0 0.66 9.8 0.2 2.5 2 1 0 2 2 2 0 Di-sulfide bridge nucleocytoplasmic transport domain Yip1 PF04893.17 gi|154150969|ref|YP_001404587.1| - 0.32 10.7 19.0 0.47 10.1 19.0 1.3 1 0 0 1 1 1 0 Yip1 domain MIG-14_Wnt-bd PF06664.12 gi|154150969|ref|YP_001404587.1| - 1.1 8.4 8.9 0.26 10.5 4.6 1.8 1 1 0 1 1 1 0 Wnt-binding factor required for Wnt secretion TetR_N PF00440.23 gi|154150970|ref|YP_001404588.1| - 1.4e-13 50.4 0.0 2.7e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 gi|154150970|ref|YP_001404588.1| - 9.2e-06 26.0 0.0 2.3e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain Pox_RNA_pol PF03293.14 gi|154150970|ref|YP_001404588.1| - 0.0049 16.6 0.0 0.0069 16.1 0.0 1.2 1 0 0 1 1 1 1 Poxvirus DNA-directed RNA polymerase, 18 kD subunit TetR_C_6 PF13977.6 gi|154150970|ref|YP_001404588.1| - 0.015 15.5 0.0 0.04 14.1 0.0 1.8 1 1 1 2 2 2 0 BetI-type transcriptional repressor, C-terminal TetR_C_29 PF17938.1 gi|154150970|ref|YP_001404588.1| - 0.094 12.8 0.1 0.17 11.9 0.1 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain CBM_5_12 PF02839.14 gi|154150972|ref|YP_001404590.1| - 1.6e-06 28.3 7.9 1.8e-06 28.2 7.9 1.1 1 0 0 1 1 1 1 Carbohydrate binding domain CBM_5_12_2 PF14600.6 gi|154150972|ref|YP_001404590.1| - 0.00017 21.5 1.5 0.00017 21.4 1.5 1.0 1 0 0 1 1 1 1 Cellulose-binding domain PEGA PF08308.11 gi|154150974|ref|YP_001404592.1| - 4.5e-31 106.5 9.3 1.6e-16 59.9 1.6 3.7 2 1 2 4 4 4 2 PEGA domain CarboxypepD_reg PF13620.6 gi|154150974|ref|YP_001404592.1| - 1.6e-06 28.3 5.6 0.0011 19.2 1.8 3.3 2 1 1 3 3 3 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|154150974|ref|YP_001404592.1| - 0.00064 19.7 0.1 0.074 13.1 0.2 2.7 2 1 0 2 2 2 1 CarboxypepD_reg-like domain fn3_3 PF14686.6 gi|154150974|ref|YP_001404592.1| - 0.029 14.2 3.4 0.079 12.8 0.6 2.8 3 0 0 3 3 3 0 Polysaccharide lyase family 4, domain II Rtt102p PF09510.10 gi|154150974|ref|YP_001404592.1| - 0.14 12.3 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Rtt102p-like transcription regulator protein zinc_ribbon_2 PF13240.6 gi|154150975|ref|YP_001404593.1| - 7.1e-06 25.6 4.9 1.2e-05 24.9 4.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|154150975|ref|YP_001404593.1| - 3.7e-05 23.7 0.6 6.2e-05 22.9 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|154150975|ref|YP_001404593.1| - 0.021 15.6 0.1 0.036 14.8 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family bPH_3 PF14470.6 gi|154150975|ref|YP_001404593.1| - 0.022 15.1 0.1 0.041 14.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial PH domain Myosin_TH1 PF06017.13 gi|154150975|ref|YP_001404593.1| - 0.038 13.7 0.2 0.066 12.9 0.2 1.3 1 0 0 1 1 1 0 Unconventional myosin tail, actin- and lipid-binding zf-ribbon_3 PF13248.6 gi|154150975|ref|YP_001404593.1| - 0.13 11.8 3.4 0.23 10.9 3.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF2116 PF09889.9 gi|154150975|ref|YP_001404593.1| - 0.17 11.9 4.4 3 7.9 0.6 2.3 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DHHC PF01529.20 gi|154150975|ref|YP_001404593.1| - 0.17 12.0 0.1 0.35 11.0 0.1 1.5 1 0 0 1 1 1 0 DHHC palmitoyltransferase Vps36_ESCRT-II PF11605.8 gi|154150975|ref|YP_001404593.1| - 0.18 12.0 0.3 0.95 9.7 0.3 2.1 1 1 0 1 1 1 0 Vacuolar protein sorting protein 36 Vps36 zf_UBZ PF18439.1 gi|154150975|ref|YP_001404593.1| - 0.21 11.2 1.5 12 5.6 0.1 2.3 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF2897 PF11446.8 gi|154150975|ref|YP_001404593.1| - 0.21 11.5 4.6 0.41 10.6 4.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2897) zf-NADH-PPase PF09297.11 gi|154150975|ref|YP_001404593.1| - 1 9.1 6.0 6.9 6.4 1.3 2.7 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-RRN7 PF11781.8 gi|154150975|ref|YP_001404593.1| - 8.4 6.2 6.3 1.9 8.3 0.7 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 tRNA-synt_2b PF00587.25 gi|154150976|ref|YP_001404594.1| - 2.4e-40 138.4 0.0 4.7e-40 137.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|154150976|ref|YP_001404594.1| - 1.4e-21 76.7 3.3 3e-21 75.7 3.3 1.6 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Nramp PF01566.18 gi|154150977|ref|YP_001404595.1| - 8e-72 242.2 31.0 1e-71 241.9 31.0 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein MgtE_N PF03448.17 gi|154150979|ref|YP_001404597.1| - 1.9e-21 76.5 5.3 5.1e-21 75.2 5.3 1.8 1 0 0 1 1 1 1 MgtE intracellular N domain CBS PF00571.28 gi|154150979|ref|YP_001404597.1| - 5.3e-13 49.2 3.5 1.5e-10 41.3 0.0 3.9 5 0 0 5 5 5 2 CBS domain FliG_M PF14841.6 gi|154150979|ref|YP_001404597.1| - 1.3e-05 25.3 1.5 0.1 12.8 0.1 3.1 2 1 1 3 3 3 2 FliG middle domain PRC PF05239.16 gi|154150979|ref|YP_001404597.1| - 5.3e-05 23.2 1.2 0.00012 22.1 0.2 2.2 2 0 0 2 2 2 1 PRC-barrel domain FliG_N PF14842.6 gi|154150979|ref|YP_001404597.1| - 0.1 13.2 3.0 1.7 9.3 0.4 2.7 2 1 1 3 3 3 0 FliG N-terminal domain Methyltransf_25 PF13649.6 gi|154150980|ref|YP_001404598.1| - 1.3e-18 67.5 0.0 1.9e-18 67.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154150980|ref|YP_001404598.1| - 6.2e-18 65.2 0.0 9.6e-18 64.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154150980|ref|YP_001404598.1| - 2.5e-11 43.6 0.0 2.9e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154150980|ref|YP_001404598.1| - 3.7e-11 43.1 0.0 4.9e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154150980|ref|YP_001404598.1| - 9.6e-09 35.9 0.0 1.4e-08 35.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|154150980|ref|YP_001404598.1| - 8.9e-05 21.9 0.0 0.00011 21.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|154150980|ref|YP_001404598.1| - 0.0081 15.8 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|154150980|ref|YP_001404598.1| - 0.014 14.7 0.0 0.018 14.3 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_17 PF12692.7 gi|154150980|ref|YP_001404598.1| - 0.014 15.4 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase MTS PF05175.14 gi|154150980|ref|YP_001404598.1| - 0.029 13.9 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|154150980|ref|YP_001404598.1| - 0.073 12.9 0.0 0.35 10.7 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_9 PF08003.11 gi|154150980|ref|YP_001404598.1| - 0.092 11.7 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TehB PF03848.14 gi|154150980|ref|YP_001404598.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB TPMT PF05724.11 gi|154150980|ref|YP_001404598.1| - 0.15 11.7 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) PEGA PF08308.11 gi|154150981|ref|YP_001404599.1| - 4.4e-05 23.3 3.4 0.00013 21.7 3.4 1.9 1 1 0 1 1 1 1 PEGA domain MGC-24 PF05283.11 gi|154150981|ref|YP_001404599.1| - 0.22 12.0 6.6 0.51 10.8 2.6 2.1 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin NIR_SIR PF01077.22 gi|154150982|ref|YP_001404600.1| - 2.2e-24 85.8 0.0 3.2e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|154150982|ref|YP_001404600.1| - 1.3e-12 47.3 0.1 3e-12 46.2 0.1 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain GcpE PF04551.14 gi|154150982|ref|YP_001404600.1| - 0.0019 17.4 0.1 0.0024 17.0 0.1 1.1 1 0 0 1 1 1 1 GcpE protein AfaD PF05775.12 gi|154150982|ref|YP_001404600.1| - 0.0094 16.4 0.0 0.018 15.4 0.0 1.5 1 0 0 1 1 1 1 Enterobacteria AfaD invasin protein PKD PF00801.20 gi|154150983|ref|YP_001404601.1| - 5.5e-38 128.7 62.0 6.2e-10 38.8 10.0 4.6 4 0 0 4 4 4 4 PKD domain MG2 PF01835.19 gi|154150983|ref|YP_001404601.1| - 5.3e-05 23.6 13.0 0.076 13.5 0.2 4.2 1 1 3 4 4 4 2 MG2 domain PKD_3 PF16820.5 gi|154150983|ref|YP_001404601.1| - 0.00024 20.8 22.1 0.85 9.4 0.7 4.7 4 0 0 4 4 4 4 PKD-like domain Phage_min_tail PF05939.13 gi|154150983|ref|YP_001404601.1| - 0.00094 19.5 5.4 1.2 9.5 0.1 4.1 4 2 2 6 6 6 2 Phage minor tail protein DUF2194 PF09960.9 gi|154150983|ref|YP_001404601.1| - 0.0022 16.4 0.0 0.0057 15.1 0.0 1.5 1 1 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2194) DUF3040 PF11239.8 gi|154150983|ref|YP_001404601.1| - 0.45 10.8 1.7 1.9 8.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Y_Y_Y PF07495.13 gi|154150983|ref|YP_001404601.1| - 0.5 10.4 14.9 0.77 9.8 0.9 3.7 3 0 0 3 3 3 0 Y_Y_Y domain DUF2115 PF09888.9 gi|154150984|ref|YP_001404602.1| - 2.4e-48 164.8 0.0 2.9e-48 164.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) HMGL-like PF00682.19 gi|154150985|ref|YP_001404603.1| - 9.2e-73 245.0 0.0 1.9e-72 244.0 0.0 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|154150985|ref|YP_001404603.1| - 7.2e-33 113.3 1.3 1.3e-32 112.4 1.3 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Ribosomal_S11 PF00411.19 gi|154150985|ref|YP_001404603.1| - 0.16 12.4 1.3 4.5 7.7 0.1 3.4 4 0 0 4 4 4 0 Ribosomal protein S11 TPP_enzyme_N PF02776.18 gi|154150986|ref|YP_001404604.1| - 1e-56 191.2 0.0 2.1e-56 190.3 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|154150986|ref|YP_001404604.1| - 5.6e-55 184.8 0.0 1e-54 184.0 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|154150986|ref|YP_001404604.1| - 1.4e-50 171.0 0.3 8.1e-50 168.6 0.0 2.4 2 1 1 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|154150986|ref|YP_001404604.1| - 0.067 12.9 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALS_ss_C PF10369.9 gi|154150987|ref|YP_001404605.1| - 1.8e-27 95.3 5.2 2.9e-27 94.7 2.4 2.0 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|154150987|ref|YP_001404605.1| - 4.9e-20 71.1 0.3 1.1e-19 70.0 0.1 1.7 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|154150987|ref|YP_001404605.1| - 3.5e-16 58.7 1.1 2.5e-15 55.9 0.1 2.4 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|154150987|ref|YP_001404605.1| - 7.9e-08 32.8 1.7 1.1e-07 32.3 0.3 1.9 2 0 0 2 2 2 1 ACT domain Saccharop_dh_N PF04455.12 gi|154150987|ref|YP_001404605.1| - 0.013 15.9 0.5 0.082 13.3 0.1 2.1 1 1 1 2 2 2 0 LOR/SDH bifunctional enzyme conserved region APG17 PF04108.12 gi|154150987|ref|YP_001404605.1| - 0.072 12.2 0.3 0.072 12.2 0.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 Acylphosphatase PF00708.18 gi|154150987|ref|YP_001404605.1| - 0.15 12.5 1.2 1.6 9.2 0.2 2.6 1 1 2 3 3 3 0 Acylphosphatase YgaB PF14182.6 gi|154150987|ref|YP_001404605.1| - 1.7 9.1 5.0 2.2 8.7 2.8 2.2 2 1 0 2 2 2 0 YgaB-like protein Lactate_perm PF02652.14 gi|154150988|ref|YP_001404606.1| - 1e-53 182.9 53.9 8.4e-53 179.9 53.9 1.9 1 1 0 1 1 1 1 L-lactate permease Amino_oxidase PF01593.24 gi|154150989|ref|YP_001404607.1| - 1.9e-21 76.9 0.0 4.2e-20 72.5 0.0 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|154150989|ref|YP_001404607.1| - 1.5e-10 41.1 0.1 3e-10 40.2 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|154150989|ref|YP_001404607.1| - 0.00093 18.5 0.1 0.0014 17.9 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|154150989|ref|YP_001404607.1| - 0.03 13.9 0.1 0.052 13.1 0.1 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase HicA_toxin PF07927.12 gi|154150989|ref|YP_001404607.1| - 0.1 12.6 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 HicA toxin of bacterial toxin-antitoxin, Pyr_redox PF00070.27 gi|154150989|ref|YP_001404607.1| - 0.26 11.9 0.8 12 6.5 0.2 3.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|154150989|ref|YP_001404607.1| - 0.28 10.2 0.2 0.43 9.6 0.2 1.2 1 0 0 1 1 1 0 FAD binding domain Glycos_transf_2 PF00535.26 gi|154150990|ref|YP_001404608.1| - 5e-29 101.3 0.0 7.3e-29 100.8 0.0 1.3 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|154150990|ref|YP_001404608.1| - 7.3e-13 48.9 0.0 1.5e-12 47.9 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|154150990|ref|YP_001404608.1| - 7.6e-07 28.9 0.1 1.3e-06 28.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|154150990|ref|YP_001404608.1| - 2.7e-06 27.0 0.0 4.6e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|154150990|ref|YP_001404608.1| - 0.017 15.6 0.0 0.03 14.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 4HBT PF03061.22 gi|154150991|ref|YP_001404609.1| - 2.3e-07 31.1 1.8 4e-07 30.3 1.8 1.5 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|154150991|ref|YP_001404609.1| - 5.3e-06 26.6 0.1 8.3e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|154150991|ref|YP_001404609.1| - 0.001 19.4 0.7 0.0015 18.8 0.7 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF2148 PF09918.9 gi|154150992|ref|YP_001404610.1| - 1.7e-32 111.2 1.0 3.5e-32 110.2 1.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.13 gi|154150992|ref|YP_001404610.1| - 1.1e-07 31.4 5.0 3e-07 30.0 5.0 1.8 1 0 0 1 1 1 1 Putative Fe-S cluster His_Phos_1 PF00300.22 gi|154150993|ref|YP_001404611.1| - 2.1e-34 118.9 0.0 3.4e-26 92.1 0.1 2.0 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) GHMP_kinases_N PF00288.26 gi|154150994|ref|YP_001404612.1| - 3.1e-05 24.1 0.5 6.4e-05 23.1 0.5 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain SNARE_assoc PF09335.11 gi|154150995|ref|YP_001404613.1| - 5.7e-21 75.2 7.5 5.7e-21 75.2 7.5 2.5 3 0 0 3 3 3 1 SNARE associated Golgi protein NCU-G1 PF15065.6 gi|154150995|ref|YP_001404613.1| - 0.13 11.2 1.1 0.18 10.8 1.1 1.3 1 0 0 1 1 1 0 Lysosomal transcription factor, NCU-G1 PEGA PF08308.11 gi|154150996|ref|YP_001404614.1| - 6.3e-15 54.8 0.0 1.1e-14 54.1 0.0 1.5 1 0 0 1 1 1 1 PEGA domain CarboxypepD_reg PF13620.6 gi|154150996|ref|YP_001404614.1| - 0.00061 20.0 0.2 0.0032 17.7 0.0 2.2 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain PP_kinase_C_1 PF17941.1 gi|154150997|ref|YP_001404615.1| - 1.2e-78 262.4 0.0 2.4e-78 261.4 0.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 PP_kinase PF02503.17 gi|154150997|ref|YP_001404615.1| - 7.7e-67 224.8 0.0 1.2e-66 224.2 0.0 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_C PF13090.6 gi|154150997|ref|YP_001404615.1| - 5.2e-65 218.1 0.0 9.9e-65 217.2 0.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 2 PP_kinase_N PF13089.6 gi|154150997|ref|YP_001404615.1| - 1.5e-35 121.8 0.0 2.6e-35 121.0 0.0 1.4 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|154150997|ref|YP_001404615.1| - 4.5e-09 36.3 0.0 0.00017 21.5 0.0 3.5 3 1 0 3 3 3 2 PLD-like domain CHAD PF05235.14 gi|154150998|ref|YP_001404616.1| - 1.5e-54 185.4 7.9 1.5e-54 185.4 7.9 1.9 2 0 0 2 2 2 1 CHAD domain HD PF01966.22 gi|154150998|ref|YP_001404616.1| - 1.9e-06 28.1 1.1 5.6e-06 26.6 0.1 2.2 2 0 0 2 2 2 1 HD domain Ppx-GppA PF02541.16 gi|154150999|ref|YP_001404617.1| - 3.5e-60 203.9 0.0 5e-60 203.4 0.0 1.2 1 0 0 1 1 1 1 Ppx/GppA phosphatase family HD PF01966.22 gi|154150999|ref|YP_001404617.1| - 2.2e-11 44.0 2.8 4.9e-11 42.9 2.8 1.7 1 0 0 1 1 1 1 HD domain FtsA PF14450.6 gi|154150999|ref|YP_001404617.1| - 0.0016 18.8 0.0 0.62 10.5 0.0 2.9 3 0 0 3 3 3 2 Cell division protein FtsA DDR PF08841.10 gi|154150999|ref|YP_001404617.1| - 0.086 11.8 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain DUF126 PF01989.16 gi|154151000|ref|YP_001404618.1| - 6.4e-36 122.0 0.7 9.9e-36 121.4 0.7 1.3 1 0 0 1 1 1 1 Aconitase X swivel domain AAA PF00004.29 gi|154151001|ref|YP_001404619.1| - 4e-43 147.0 0.1 1.4e-42 145.3 0.0 1.9 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|154151001|ref|YP_001404619.1| - 2.6e-15 56.0 0.9 6.7e-15 54.6 0.9 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|154151001|ref|YP_001404619.1| - 2e-06 28.0 0.0 5.2e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|154151001|ref|YP_001404619.1| - 1.3e-05 25.0 0.0 5.7e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|154151001|ref|YP_001404619.1| - 1.8e-05 25.2 0.1 0.0023 18.3 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|154151001|ref|YP_001404619.1| - 0.00019 21.4 0.4 0.0057 16.7 0.4 2.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|154151001|ref|YP_001404619.1| - 0.0013 18.0 0.0 0.0025 17.1 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_22 PF13401.6 gi|154151001|ref|YP_001404619.1| - 0.0024 18.1 0.3 0.024 14.9 0.3 2.3 1 1 0 1 1 1 1 AAA domain CENP-F_N PF10481.9 gi|154151001|ref|YP_001404619.1| - 0.0039 16.9 5.9 0.0066 16.1 5.9 1.2 1 0 0 1 1 1 1 Cenp-F N-terminal domain SOGA PF11365.8 gi|154151001|ref|YP_001404619.1| - 0.0089 17.1 1.0 0.026 15.6 1.0 1.9 1 0 0 1 1 1 1 Protein SOGA IstB_IS21 PF01695.17 gi|154151001|ref|YP_001404619.1| - 0.011 15.4 0.1 0.031 14.0 0.1 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|154151001|ref|YP_001404619.1| - 0.012 14.9 0.0 0.027 13.7 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin DUF815 PF05673.13 gi|154151001|ref|YP_001404619.1| - 0.014 14.6 0.0 0.024 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NRBF2 PF08961.10 gi|154151001|ref|YP_001404619.1| - 0.017 14.7 0.7 0.028 14.0 0.7 1.3 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator YabA PF06156.13 gi|154151001|ref|YP_001404619.1| - 0.024 15.3 2.2 0.21 12.3 2.0 2.3 2 0 0 2 2 2 0 Initiation control protein YabA AAA_18 PF13238.6 gi|154151001|ref|YP_001404619.1| - 0.024 15.2 0.3 0.26 11.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|154151001|ref|YP_001404619.1| - 0.027 13.9 0.1 0.063 12.6 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|154151001|ref|YP_001404619.1| - 0.027 14.4 0.0 2.1 8.2 0.1 2.4 1 1 1 2 2 2 0 NACHT domain Sigma54_activat PF00158.26 gi|154151001|ref|YP_001404619.1| - 0.038 13.7 0.2 0.1 12.3 0.2 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|154151001|ref|YP_001404619.1| - 0.042 13.6 0.2 0.1 12.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|154151001|ref|YP_001404619.1| - 0.056 13.3 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|154151001|ref|YP_001404619.1| - 0.06 13.5 0.1 0.15 12.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|154151001|ref|YP_001404619.1| - 0.076 12.3 0.3 0.33 10.3 0.0 2.2 3 0 0 3 3 3 0 KaiC DUF2075 PF09848.9 gi|154151001|ref|YP_001404619.1| - 0.084 12.1 1.0 0.096 11.9 0.1 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|154151001|ref|YP_001404619.1| - 0.091 13.2 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|154151001|ref|YP_001404619.1| - 0.092 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|154151001|ref|YP_001404619.1| - 0.095 11.8 0.1 0.25 10.4 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_14 PF13173.6 gi|154151001|ref|YP_001404619.1| - 0.097 12.7 0.0 0.24 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Prot_ATP_OB_N PF17758.1 gi|154151001|ref|YP_001404619.1| - 0.12 12.1 0.1 0.43 10.3 0.0 1.9 2 0 0 2 2 1 0 Proteasomal ATPase OB N-terminal domain AAA_19 PF13245.6 gi|154151001|ref|YP_001404619.1| - 0.14 12.5 0.3 0.48 10.7 0.3 1.9 1 1 0 1 1 1 0 AAA domain bZIP_2 PF07716.15 gi|154151001|ref|YP_001404619.1| - 0.31 11.2 6.1 1.2 9.3 6.1 2.0 1 0 0 1 1 1 0 Basic region leucine zipper FlaC_arch PF05377.11 gi|154151001|ref|YP_001404619.1| - 0.42 11.0 5.2 9.9 6.7 2.5 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) FKBP_C PF00254.28 gi|154151003|ref|YP_001404621.1| - 6.5e-12 45.6 0.0 1e-11 45.0 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase AAA PF00004.29 gi|154151004|ref|YP_001404622.1| - 1.3e-44 151.8 0.9 2e-44 151.2 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|154151004|ref|YP_001404622.1| - 1.2e-12 47.4 0.0 4.2e-12 45.7 0.0 1.9 2 0 0 2 2 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|154151004|ref|YP_001404622.1| - 1.4e-11 44.2 0.1 3.1e-11 43.1 0.1 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_16 PF13191.6 gi|154151004|ref|YP_001404622.1| - 3.1e-07 30.9 2.2 0.00047 20.6 0.0 3.1 2 1 0 3 3 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|154151004|ref|YP_001404622.1| - 7.1e-07 29.1 0.0 1.8e-06 27.8 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|154151004|ref|YP_001404622.1| - 1.1e-06 28.9 0.0 2.3e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Prot_ATP_OB_N PF17758.1 gi|154151004|ref|YP_001404622.1| - 5.9e-06 25.8 0.0 1.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_5 PF07728.14 gi|154151004|ref|YP_001404622.1| - 9e-06 25.7 0.1 3.4e-05 23.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|154151004|ref|YP_001404622.1| - 2.8e-05 24.4 2.1 0.0073 16.6 0.0 3.2 2 1 1 3 3 3 1 AAA domain DUF815 PF05673.13 gi|154151004|ref|YP_001404622.1| - 0.0001 21.6 0.1 0.0002 20.6 0.0 1.6 2 0 0 2 2 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|154151004|ref|YP_001404622.1| - 0.00035 19.9 0.0 0.00068 18.9 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|154151004|ref|YP_001404622.1| - 0.00044 20.0 0.0 0.001 18.9 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|154151004|ref|YP_001404622.1| - 0.00067 19.7 0.0 0.0016 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|154151004|ref|YP_001404622.1| - 0.0011 19.5 0.2 0.0036 17.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|154151004|ref|YP_001404622.1| - 0.0034 17.7 2.0 0.0057 16.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|154151004|ref|YP_001404622.1| - 0.004 16.5 2.7 0.14 11.5 0.0 3.1 2 1 0 3 3 3 1 KaiC AAA_11 PF13086.6 gi|154151004|ref|YP_001404622.1| - 0.0051 16.6 2.2 0.33 10.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain CENP-F_leu_zip PF10473.9 gi|154151004|ref|YP_001404622.1| - 0.0058 16.7 12.6 0.011 15.7 12.6 1.5 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_3 PF07726.11 gi|154151004|ref|YP_001404622.1| - 0.0081 16.0 0.0 0.02 14.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|154151004|ref|YP_001404622.1| - 0.0087 16.4 0.0 0.018 15.4 0.0 1.5 1 0 0 1 1 1 1 RNA helicase Mg_chelatase PF01078.21 gi|154151004|ref|YP_001404622.1| - 0.0096 15.3 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|154151004|ref|YP_001404622.1| - 0.015 15.5 1.0 0.027 14.6 0.0 2.0 2 1 0 2 2 1 0 AAA domain AAA_7 PF12775.7 gi|154151004|ref|YP_001404622.1| - 0.016 14.7 0.0 0.033 13.7 0.0 1.5 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|154151004|ref|YP_001404622.1| - 0.022 14.5 0.1 0.059 13.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|154151004|ref|YP_001404622.1| - 0.028 14.1 0.1 0.17 11.6 0.0 2.1 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|154151004|ref|YP_001404622.1| - 0.04 13.6 1.5 0.098 12.4 0.1 2.3 2 1 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.17 gi|154151004|ref|YP_001404622.1| - 0.04 13.0 0.0 0.077 12.1 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|154151004|ref|YP_001404622.1| - 0.047 13.1 0.0 0.088 12.2 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein DUF2075 PF09848.9 gi|154151004|ref|YP_001404622.1| - 0.047 12.9 1.1 0.49 9.6 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Golgin_A5 PF09787.9 gi|154151004|ref|YP_001404622.1| - 0.051 13.0 9.9 0.092 12.2 9.9 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 NTPase_1 PF03266.15 gi|154151004|ref|YP_001404622.1| - 0.052 13.4 0.4 0.15 12.0 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_17 PF13207.6 gi|154151004|ref|YP_001404622.1| - 0.06 13.8 1.5 0.78 10.2 0.1 2.9 2 2 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|154151004|ref|YP_001404622.1| - 0.065 13.2 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Vps4_C PF09336.10 gi|154151004|ref|YP_001404622.1| - 0.066 13.2 0.1 8.7 6.4 0.0 3.0 3 0 0 3 3 2 0 Vps4 C terminal oligomerisation domain AAA_25 PF13481.6 gi|154151004|ref|YP_001404622.1| - 0.074 12.6 0.5 0.37 10.3 0.1 2.1 1 1 1 2 2 2 0 AAA domain Spc7 PF08317.11 gi|154151004|ref|YP_001404622.1| - 0.075 11.9 5.9 0.19 10.6 5.9 1.6 1 0 0 1 1 1 0 Spc7 kinetochore protein YlqD PF11068.8 gi|154151004|ref|YP_001404622.1| - 0.094 13.1 5.2 0.14 12.5 4.1 1.8 2 0 0 2 2 1 0 YlqD protein NACHT PF05729.12 gi|154151004|ref|YP_001404622.1| - 0.094 12.6 0.6 0.55 10.1 0.0 2.4 2 1 1 3 3 3 0 NACHT domain ABC_tran PF00005.27 gi|154151004|ref|YP_001404622.1| - 0.1 13.1 0.4 0.92 10.0 0.0 2.3 2 0 0 2 2 2 0 ABC transporter NB-ARC PF00931.22 gi|154151004|ref|YP_001404622.1| - 0.15 11.2 0.2 0.53 9.4 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain YabA PF06156.13 gi|154151004|ref|YP_001404622.1| - 0.44 11.2 4.4 6.2 7.5 5.0 2.3 2 0 0 2 2 2 0 Initiation control protein YabA APG6_N PF17675.1 gi|154151004|ref|YP_001404622.1| - 0.57 10.7 12.9 1.2 9.7 12.9 1.5 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF724 PF05266.14 gi|154151004|ref|YP_001404622.1| - 0.92 9.3 5.7 1.5 8.6 5.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF3450 PF11932.8 gi|154151004|ref|YP_001404622.1| - 1.1 8.6 8.0 1.9 7.7 8.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) HTH_3 PF01381.22 gi|154151005|ref|YP_001404623.1| - 2.5e-08 33.8 1.2 4.3e-08 33.1 1.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|154151005|ref|YP_001404623.1| - 1.9e-06 27.8 1.3 3.1e-06 27.1 1.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|154151005|ref|YP_001404623.1| - 5.1e-05 23.5 0.0 8.9e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|154151005|ref|YP_001404623.1| - 9.7e-05 22.1 1.5 0.00017 21.4 1.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Pou PF00157.17 gi|154151005|ref|YP_001404623.1| - 0.033 14.1 0.1 0.095 12.7 0.0 1.8 2 0 0 2 2 2 0 Pou domain - N-terminal to homeobox domain DZR PF12773.7 gi|154151005|ref|YP_001404623.1| - 0.14 12.2 0.8 0.22 11.6 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon PAS PF00989.25 gi|154151006|ref|YP_001404624.1| - 5.2e-41 139.2 0.4 1.7e-14 53.8 0.0 5.0 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|154151006|ref|YP_001404624.1| - 5.1e-40 135.9 0.1 6.6e-13 48.8 0.2 4.3 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.10 gi|154151006|ref|YP_001404624.1| - 2.6e-27 95.2 0.5 2.5e-09 37.4 0.2 4.4 3 1 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|154151006|ref|YP_001404624.1| - 1.7e-21 76.5 0.0 1.2e-20 73.7 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.7 gi|154151006|ref|YP_001404624.1| - 3.5e-17 62.0 0.0 0.00033 20.6 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|154151006|ref|YP_001404624.1| - 3.8e-13 49.5 0.0 2.5e-06 27.7 0.0 4.9 3 2 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|154151006|ref|YP_001404624.1| - 2.8e-12 47.1 0.0 6.4e-12 46.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MEKHLA PF08670.11 gi|154151006|ref|YP_001404624.1| - 0.022 14.7 0.0 0.057 13.3 0.0 1.7 1 0 0 1 1 1 0 MEKHLA domain SPOB_a PF14689.6 gi|154151006|ref|YP_001404624.1| - 0.045 13.5 0.1 0.11 12.2 0.1 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.25 gi|154151006|ref|YP_001404624.1| - 0.046 13.8 1.2 0.15 12.1 0.1 2.4 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|154151006|ref|YP_001404624.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase dCache_1 PF02743.18 gi|154151006|ref|YP_001404624.1| - 0.16 11.7 0.4 7.3 6.3 0.3 3.0 2 1 1 3 3 3 0 Cache domain Response_reg PF00072.24 gi|154151007|ref|YP_001404625.1| - 1.7e-27 95.8 0.1 3.7e-27 94.7 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|154151007|ref|YP_001404625.1| - 1.4e-20 73.9 0.0 3.3e-20 72.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|154151007|ref|YP_001404625.1| - 1.1e-10 42.0 0.0 2.8e-10 40.6 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|154151007|ref|YP_001404625.1| - 2.5e-09 37.5 0.0 4.5e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|154151007|ref|YP_001404625.1| - 2.8e-06 27.1 0.2 0.00035 20.4 0.0 2.9 3 0 0 3 3 3 1 GHKL domain GAF PF01590.26 gi|154151007|ref|YP_001404625.1| - 5.8e-06 27.0 0.0 1.3e-05 25.9 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|154151007|ref|YP_001404625.1| - 8.8e-05 22.5 0.0 0.00019 21.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|154151007|ref|YP_001404625.1| - 0.007 16.2 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|154151007|ref|YP_001404625.1| - 0.18 11.8 3.5 0.14 12.2 0.8 2.3 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain AA_permease_2 PF13520.6 gi|154151008|ref|YP_001404626.1| - 4.3e-54 184.0 53.4 5.7e-54 183.6 53.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|154151008|ref|YP_001404626.1| - 2.2e-38 132.1 51.5 2.9e-38 131.7 51.5 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|154151008|ref|YP_001404626.1| - 1e-13 51.1 7.4 1e-13 51.1 7.4 4.5 5 0 0 5 5 5 1 C-terminus of AA_permease Spore_permease PF03845.13 gi|154151008|ref|YP_001404626.1| - 0.0018 17.2 9.1 0.0018 17.2 9.1 2.7 3 0 0 3 3 3 2 Spore germination protein FMN_red PF03358.15 gi|154151009|ref|YP_001404627.1| - 3e-33 114.8 0.0 3.7e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154151009|ref|YP_001404627.1| - 1e-05 25.3 0.0 1.7e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|154151010|ref|YP_001404628.1| - 1.2e-19 70.6 0.0 1.6e-19 70.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154151010|ref|YP_001404628.1| - 5.7e-11 42.5 0.0 6.6e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Fer4 PF00037.27 gi|154151012|ref|YP_001404630.1| - 9.8e-17 60.0 13.3 6.1e-10 38.5 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154151012|ref|YP_001404630.1| - 2.3e-14 53.7 19.0 2e-11 44.3 9.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154151012|ref|YP_001404630.1| - 9.7e-13 47.6 13.3 2.2e-08 33.8 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154151012|ref|YP_001404630.1| - 4.5e-12 46.7 15.6 4.4e-10 40.3 6.7 1.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|154151012|ref|YP_001404630.1| - 1.1e-10 41.5 5.9 2.5e-10 40.4 5.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154151012|ref|YP_001404630.1| - 1.5e-10 40.5 14.1 3.9e-06 26.6 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|154151012|ref|YP_001404630.1| - 2e-10 40.6 19.9 3.3e-08 33.5 11.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154151012|ref|YP_001404630.1| - 5e-09 36.0 11.7 0.00015 22.0 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154151012|ref|YP_001404630.1| - 3.5e-08 33.5 11.3 1.4e-07 31.5 11.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154151012|ref|YP_001404630.1| - 1.5e-07 31.9 21.3 6.7e-06 26.6 10.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|154151012|ref|YP_001404630.1| - 4.7e-07 30.4 4.3 0.0025 18.5 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|154151012|ref|YP_001404630.1| - 3.8e-06 27.7 7.1 0.022 15.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154151012|ref|YP_001404630.1| - 4.7e-06 27.0 10.9 4e-05 24.0 11.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154151012|ref|YP_001404630.1| - 0.00011 22.6 6.9 0.013 16.0 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|154151012|ref|YP_001404630.1| - 0.00031 21.5 23.5 0.0018 19.1 8.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain MTHFR_C PF12225.8 gi|154151012|ref|YP_001404630.1| - 0.12 12.0 5.4 1.6 8.4 0.9 2.2 2 0 0 2 2 2 0 Methylene-tetrahydrofolate reductase C terminal Fer4_18 PF13746.6 gi|154151012|ref|YP_001404630.1| - 0.32 11.2 11.7 1.6 9.0 1.1 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|154151012|ref|YP_001404630.1| - 0.53 10.4 8.5 1.1 9.4 0.4 2.4 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Molydop_binding PF01568.21 gi|154151013|ref|YP_001404631.1| - 6.8e-13 48.6 0.0 8.6e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|154151014|ref|YP_001404632.1| - 3.6e-10 39.4 0.0 2.3e-07 30.2 0.0 2.9 3 0 0 3 3 3 2 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|154151014|ref|YP_001404632.1| - 0.00024 20.8 0.0 3.2 7.5 0.0 3.9 3 1 0 3 3 3 2 Thiamine pyrophosphate enzyme, central domain Molybdop_Fe4S4 PF04879.16 gi|154151014|ref|YP_001404632.1| - 0.09 12.8 0.9 0.26 11.3 0.3 2.0 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain Amidohydro_3 PF07969.11 gi|154151015|ref|YP_001404633.1| - 6.9e-79 266.5 0.1 8.6e-79 266.2 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|154151015|ref|YP_001404633.1| - 4e-07 29.7 0.0 8.7e-05 22.0 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family GXGXG PF01493.19 gi|154151016|ref|YP_001404634.1| - 1.7e-09 37.6 17.2 2.6e-09 36.9 16.9 1.5 1 1 0 1 1 1 1 GXGXG motif DIM PF08194.12 gi|154151016|ref|YP_001404634.1| - 0.018 15.2 0.9 8.9 6.6 0.0 3.4 3 0 0 3 3 3 0 DIM protein Nitroreductase PF00881.24 gi|154151017|ref|YP_001404635.1| - 2.8e-18 66.6 0.0 3.5e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family NIR_SIR_ferr PF03460.17 gi|154151018|ref|YP_001404636.1| - 2.7e-20 72.0 0.0 1.7e-19 69.4 0.0 2.1 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain NIR_SIR PF01077.22 gi|154151018|ref|YP_001404636.1| - 2.5e-17 62.8 0.0 3.2e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain Fer4 PF00037.27 gi|154151018|ref|YP_001404636.1| - 1.6e-09 37.2 9.8 0.00029 20.5 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154151018|ref|YP_001404636.1| - 2.6e-06 27.3 13.0 0.00058 19.8 0.4 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154151018|ref|YP_001404636.1| - 6.5e-06 26.6 8.6 6.5e-06 26.6 8.6 2.4 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154151018|ref|YP_001404636.1| - 3.4e-05 23.9 10.6 3.4e-05 23.9 10.6 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154151018|ref|YP_001404636.1| - 0.00026 21.4 9.6 0.043 14.3 0.0 3.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154151018|ref|YP_001404636.1| - 0.00027 21.4 9.9 0.042 14.4 1.2 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|154151018|ref|YP_001404636.1| - 0.00042 20.5 4.3 0.0009 19.4 4.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|154151018|ref|YP_001404636.1| - 0.0025 18.5 8.4 0.15 12.8 0.1 3.4 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|154151018|ref|YP_001404636.1| - 0.0031 17.5 18.7 0.022 14.8 1.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154151018|ref|YP_001404636.1| - 0.0035 17.4 11.2 0.0035 17.4 11.2 2.3 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154151018|ref|YP_001404636.1| - 0.012 16.1 3.3 0.012 16.1 3.3 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|154151018|ref|YP_001404636.1| - 0.016 15.3 12.8 0.016 15.3 12.8 2.8 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154151018|ref|YP_001404636.1| - 0.038 14.9 11.0 0.6 11.1 1.3 2.8 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain GcpE PF04551.14 gi|154151018|ref|YP_001404636.1| - 1.1 8.2 6.5 0.085 11.9 0.3 1.9 1 1 1 2 2 2 0 GcpE protein Fer4_22 PF17179.4 gi|154151018|ref|YP_001404636.1| - 2.5 9.0 15.9 3.2 8.7 1.8 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain GP44 PF17510.2 gi|154151019|ref|YP_001404637.1| - 0.03 14.6 0.3 0.042 14.1 0.3 1.2 1 0 0 1 1 1 0 Gene product 44 CHD5 PF04420.14 gi|154151019|ref|YP_001404637.1| - 0.068 13.0 1.9 0.22 11.4 1.9 1.8 1 1 0 1 1 1 0 CHD5-like protein DUF2927 PF11150.8 gi|154151020|ref|YP_001404638.1| - 8.4e-06 26.0 0.0 1.3e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2927) Imm72 PF15584.6 gi|154151020|ref|YP_001404638.1| - 0.14 12.3 0.0 0.7 10.1 0.0 2.1 2 0 0 2 2 2 0 Immunity protein 72 MetOD2 PF18548.1 gi|154151021|ref|YP_001404639.1| - 3.9e-30 103.8 0.7 5.8e-30 103.2 0.7 1.3 1 0 0 1 1 1 1 Metanogen output domain 2 Response_reg PF00072.24 gi|154151021|ref|YP_001404639.1| - 1.4e-22 80.0 0.2 2.1e-22 79.4 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Glyco_transf_22 PF03901.17 gi|154151021|ref|YP_001404639.1| - 0.2 10.8 0.1 0.28 10.4 0.1 1.1 1 0 0 1 1 1 0 Alg9-like mannosyltransferase family CarboxypepD_reg PF13620.6 gi|154151022|ref|YP_001404640.1| - 1.3e-05 25.3 0.4 5.7e-05 23.3 0.3 2.0 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|154151022|ref|YP_001404640.1| - 4e-05 23.5 0.0 0.00012 22.1 0.0 1.7 2 0 0 2 2 2 1 CarboxypepD_reg-like domain PEGA PF08308.11 gi|154151022|ref|YP_001404640.1| - 9.2e-05 22.3 0.4 0.00033 20.5 0.4 1.9 1 1 0 1 1 1 1 PEGA domain Peptidase_M64 PF09471.10 gi|154151022|ref|YP_001404640.1| - 0.036 13.6 0.0 0.081 12.4 0.0 1.5 1 0 0 1 1 1 0 IgA Peptidase M64 DUF3494 PF11999.8 gi|154151023|ref|YP_001404641.1| - 0 1093.6 180.5 6.7e-71 238.2 25.2 6.9 7 0 0 7 7 7 5 Protein of unknown function (DUF3494) SWM_repeat PF13753.6 gi|154151023|ref|YP_001404641.1| - 3e-08 33.7 16.0 0.00024 21.2 1.3 4.6 3 0 0 3 3 3 3 Putative flagellar system-associated repeat QSregVF PF13652.6 gi|154151023|ref|YP_001404641.1| - 0.075 13.1 1.8 1.2e+02 2.7 0.0 4.8 5 0 0 5 5 5 0 Putative quorum-sensing-regulated virulence factor Transglut_core3 PF13471.6 gi|154151024|ref|YP_001404642.1| - 0.0069 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily tRNA_anti-like PF12869.7 gi|154151024|ref|YP_001404642.1| - 0.095 12.3 0.3 2.4 7.8 0.0 2.3 2 0 0 2 2 2 0 tRNA_anti-like EB PF01683.18 gi|154151024|ref|YP_001404642.1| - 8.4 6.8 29.5 0.81 10.0 12.8 2.7 2 1 1 3 3 3 0 EB module Response_reg PF00072.24 gi|154151025|ref|YP_001404643.1| - 1.2e-22 80.2 1.1 3.6e-22 78.6 0.0 2.3 3 0 0 3 3 3 1 Response regulator receiver domain GAF_2 PF13185.6 gi|154151025|ref|YP_001404643.1| - 1.9e-18 67.1 0.0 4.8e-18 65.8 0.0 1.7 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|154151025|ref|YP_001404643.1| - 2.8e-13 50.3 0.1 6.7e-13 49.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|154151025|ref|YP_001404643.1| - 6.5e-08 32.4 0.9 3.5e-07 30.1 0.0 2.8 3 0 0 3 3 3 1 PAS domain PAS_9 PF13426.7 gi|154151025|ref|YP_001404643.1| - 6.3e-07 29.6 0.1 1.9e-06 28.1 0.1 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|154151025|ref|YP_001404643.1| - 8.6e-05 22.5 0.0 0.00029 20.8 0.0 2.0 1 1 0 1 1 1 1 PAS fold OKR_DC_1_N PF03709.15 gi|154151025|ref|YP_001404643.1| - 0.00019 21.7 0.0 0.0087 16.3 0.0 3.3 4 0 0 4 4 4 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_4 PF08448.10 gi|154151025|ref|YP_001404643.1| - 0.0045 17.2 0.0 0.019 15.2 0.0 2.1 2 0 0 2 2 2 1 PAS fold SPOB_a PF14689.6 gi|154151025|ref|YP_001404643.1| - 0.016 14.9 0.1 0.15 11.8 0.0 2.2 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Ca_hom_mod PF14798.6 gi|154151026|ref|YP_001404644.1| - 0.0073 15.4 0.1 0.0078 15.3 0.1 1.0 1 0 0 1 1 1 1 Calcium homeostasis modulator ATPase PF06745.13 gi|154151027|ref|YP_001404645.1| - 4.1e-105 350.2 0.0 1.3e-65 221.0 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|154151027|ref|YP_001404645.1| - 1.2e-12 47.8 0.0 7e-06 25.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain DnaB_C PF03796.15 gi|154151027|ref|YP_001404645.1| - 4.2e-10 39.4 1.0 6.3e-05 22.4 0.0 2.7 3 0 0 3 3 3 2 DnaB-like helicase C terminal domain RecA PF00154.21 gi|154151027|ref|YP_001404645.1| - 4.3e-08 32.9 0.0 0.0005 19.6 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein GvpD PF07088.11 gi|154151027|ref|YP_001404645.1| - 6.1e-08 31.7 0.4 0.00045 19.0 0.1 3.6 3 1 0 3 3 3 2 GvpD gas vesicle protein AAA_16 PF13191.6 gi|154151027|ref|YP_001404645.1| - 1.7e-07 31.8 0.0 0.0002 21.8 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain IstB_IS21 PF01695.17 gi|154151027|ref|YP_001404645.1| - 2.2e-06 27.5 0.0 0.002 17.9 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein NACHT PF05729.12 gi|154151027|ref|YP_001404645.1| - 7.5e-06 26.0 0.1 0.014 15.3 0.0 2.3 2 0 0 2 2 2 2 NACHT domain AAA PF00004.29 gi|154151027|ref|YP_001404645.1| - 2.2e-05 24.9 0.2 0.088 13.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|154151027|ref|YP_001404645.1| - 5e-05 23.1 0.1 0.015 15.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain Rad51 PF08423.11 gi|154151027|ref|YP_001404645.1| - 5.9e-05 22.5 0.2 0.27 10.5 0.0 2.5 2 0 0 2 2 2 2 Rad51 AAA_19 PF13245.6 gi|154151027|ref|YP_001404645.1| - 0.00016 22.1 0.0 0.68 10.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|154151027|ref|YP_001404645.1| - 0.0003 20.2 0.0 0.19 11.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|154151027|ref|YP_001404645.1| - 0.00038 20.8 0.1 0.034 14.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain MEDS PF14417.6 gi|154151027|ref|YP_001404645.1| - 0.00041 20.2 0.1 0.013 15.3 0.0 2.8 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_7 PF12775.7 gi|154151027|ref|YP_001404645.1| - 0.00084 18.9 0.1 0.13 11.7 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region ResIII PF04851.15 gi|154151027|ref|YP_001404645.1| - 0.0014 18.7 0.0 0.058 13.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit RNA_helicase PF00910.22 gi|154151027|ref|YP_001404645.1| - 0.0016 18.8 0.0 1.7 9.1 0.0 2.6 2 0 0 2 2 2 1 RNA helicase Sigma54_activat PF00158.26 gi|154151027|ref|YP_001404645.1| - 0.0043 16.8 0.2 0.1 12.3 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_11 PF13086.6 gi|154151027|ref|YP_001404645.1| - 0.0044 16.9 0.9 9.7 5.9 0.0 3.1 3 0 0 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|154151027|ref|YP_001404645.1| - 0.0051 16.1 0.2 0.3 10.3 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_14 PF13173.6 gi|154151027|ref|YP_001404645.1| - 0.012 15.7 0.0 1.9 8.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|154151027|ref|YP_001404645.1| - 0.03 14.0 0.0 0.32 10.6 0.0 2.2 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Roc PF08477.13 gi|154151027|ref|YP_001404645.1| - 0.031 14.5 0.0 0.1 12.8 0.0 1.9 2 0 0 2 2 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_30 PF13604.6 gi|154151027|ref|YP_001404645.1| - 0.033 13.9 0.0 1.7 8.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|154151027|ref|YP_001404645.1| - 0.037 13.1 0.0 0.73 8.8 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|154151027|ref|YP_001404645.1| - 0.045 13.8 0.0 6.7 6.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) UvrD-helicase PF00580.21 gi|154151027|ref|YP_001404645.1| - 0.048 13.2 0.1 9 5.7 0.2 2.4 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain TrwB_AAD_bind PF10412.9 gi|154151027|ref|YP_001404645.1| - 0.054 12.4 0.1 0.16 10.8 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain PAXNEB PF05625.11 gi|154151027|ref|YP_001404645.1| - 0.058 12.5 0.9 2.6 7.1 0.0 2.2 2 0 0 2 2 2 0 PAXNEB protein TIP49 PF06068.13 gi|154151027|ref|YP_001404645.1| - 0.06 12.5 0.7 0.56 9.4 0.0 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain TniB PF05621.11 gi|154151027|ref|YP_001404645.1| - 0.082 12.3 0.0 0.58 9.5 0.0 2.2 3 0 0 3 3 3 0 Bacterial TniB protein Viral_helicase1 PF01443.18 gi|154151027|ref|YP_001404645.1| - 0.11 12.2 0.0 6.5 6.4 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase CbiA PF01656.23 gi|154151027|ref|YP_001404645.1| - 0.19 11.8 0.3 1.5 8.9 0.1 2.8 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|154151027|ref|YP_001404645.1| - 3.9 8.0 4.6 4.6 7.8 0.0 2.8 3 0 0 3 3 3 0 ABC transporter KaiB PF07689.12 gi|154151028|ref|YP_001404646.1| - 1.4e-25 88.8 0.1 2.1e-25 88.2 0.1 1.2 1 0 0 1 1 1 1 KaiB domain KaiB PF07689.12 gi|154151029|ref|YP_001404647.1| - 5.9e-18 64.4 0.0 8.1e-18 63.9 0.0 1.2 1 0 0 1 1 1 1 KaiB domain SepSecS PF05889.13 gi|154151029|ref|YP_001404647.1| - 0.053 12.2 0.0 0.057 12.1 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS PAS_4 PF08448.10 gi|154151030|ref|YP_001404648.1| - 2.6e-51 172.5 0.0 6.7e-14 52.1 0.0 5.9 5 1 0 5 5 5 5 PAS fold PAS PF00989.25 gi|154151030|ref|YP_001404648.1| - 5.3e-42 142.4 0.0 3e-14 53.0 0.0 5.7 6 0 0 6 6 6 4 PAS fold PAS_9 PF13426.7 gi|154151030|ref|YP_001404648.1| - 2.7e-35 120.7 0.2 8.3e-12 45.3 0.0 5.7 5 0 0 5 5 5 4 PAS domain PAS_8 PF13188.7 gi|154151030|ref|YP_001404648.1| - 4.2e-25 87.3 0.0 4.3e-07 29.8 0.0 5.1 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.12 gi|154151030|ref|YP_001404648.1| - 1e-21 77.0 0.0 2.4e-07 30.9 0.0 4.9 4 0 0 4 4 4 3 PAS fold HisKA_2 PF07568.12 gi|154151030|ref|YP_001404648.1| - 5.9e-19 67.9 1.2 2.5e-18 65.9 1.2 2.2 1 0 0 1 1 1 1 Histidine kinase PAS_7 PF12860.7 gi|154151030|ref|YP_001404648.1| - 6.7e-17 61.7 0.1 5.6e-07 29.7 0.0 6.1 6 3 0 6 6 5 2 PAS fold PAS_10 PF13596.6 gi|154151030|ref|YP_001404648.1| - 8.5e-11 42.4 0.3 0.081 13.5 0.0 5.0 5 0 0 5 5 5 2 PAS domain HATPase_c PF02518.26 gi|154151030|ref|YP_001404648.1| - 9.9e-09 35.7 0.1 3.6e-08 33.9 0.1 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|154151030|ref|YP_001404648.1| - 2e-07 31.0 0.0 5.4e-07 29.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|154151030|ref|YP_001404648.1| - 2.2e-05 25.1 1.4 4.3e-05 24.1 0.2 2.2 2 0 0 2 2 1 1 HWE histidine kinase HATPase_c_3 PF13589.6 gi|154151030|ref|YP_001404648.1| - 0.014 15.3 0.0 0.035 13.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|154151030|ref|YP_001404648.1| - 0.016 14.9 2.6 0.016 14.9 0.6 2.1 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain CENP-F_leu_zip PF10473.9 gi|154151030|ref|YP_001404648.1| - 7 6.7 8.0 3.3 7.7 0.3 2.9 3 0 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Response_reg PF00072.24 gi|154151031|ref|YP_001404649.1| - 1.8e-22 79.6 0.2 6.9e-22 77.7 0.2 2.0 2 0 0 2 2 2 1 Response regulator receiver domain PadR PF03551.14 gi|154151031|ref|YP_001404649.1| - 5.2e-08 32.7 0.1 1.6e-07 31.2 0.1 1.9 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|154151031|ref|YP_001404649.1| - 0.02 14.7 0.1 0.15 12.0 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|154151031|ref|YP_001404649.1| - 0.027 14.8 0.0 0.14 12.5 0.0 2.1 1 1 1 2 2 2 0 Penicillinase repressor Peptidase_C13 PF01650.18 gi|154151032|ref|YP_001404650.1| - 1.7e-46 158.8 0.0 2.8e-46 158.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase C13 family Peripla_BP_6 PF13458.6 gi|154151032|ref|YP_001404650.1| - 4.6e-34 118.6 4.5 8.8e-34 117.7 3.7 1.9 3 0 0 3 3 3 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|154151032|ref|YP_001404650.1| - 4.7e-13 49.0 0.0 7.9e-13 48.2 0.0 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|154151032|ref|YP_001404650.1| - 2.6e-08 33.2 0.0 3.9e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain MscL PF01741.18 gi|154151033|ref|YP_001404651.1| - 6.6e-22 78.1 8.7 8.2e-22 77.8 8.7 1.1 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL DegT_DnrJ_EryC1 PF01041.17 gi|154151033|ref|YP_001404651.1| - 0.0065 15.8 0.0 0.0071 15.7 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF2798 PF11391.8 gi|154151033|ref|YP_001404651.1| - 0.039 14.0 3.4 0.74 9.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2798) PrgI PF12666.7 gi|154151033|ref|YP_001404651.1| - 0.14 12.9 6.0 0.62 10.8 6.0 1.9 1 1 0 1 1 1 0 PrgI family protein DUF3494 PF11999.8 gi|154151034|ref|YP_001404652.1| - 0 1173.0 130.4 1.2e-72 243.9 21.0 5.1 5 0 0 5 5 5 5 Protein of unknown function (DUF3494) DUF2917 PF11142.8 gi|154151034|ref|YP_001404652.1| - 2.3e-07 30.1 1.6 6.2 6.3 0.0 5.7 5 0 0 5 5 5 2 Protein of unknown function (DUF2917) BiPBP_C PF06832.12 gi|154151034|ref|YP_001404652.1| - 0.0018 18.2 0.1 1e+02 3.0 0.0 5.1 5 0 0 5 5 5 0 Penicillin-Binding Protein C-terminus Family QSregVF PF13652.6 gi|154151034|ref|YP_001404652.1| - 0.0052 16.8 1.1 67 3.5 0.0 4.7 5 0 0 5 5 5 0 Putative quorum-sensing-regulated virulence factor LydB PF16084.5 gi|154151034|ref|YP_001404652.1| - 0.011 15.5 0.0 82 3.0 0.0 4.4 5 0 0 5 5 5 0 LydA-holin antagonist WI12 PF07107.11 gi|154151034|ref|YP_001404652.1| - 0.13 12.4 12.2 28 4.9 0.1 5.4 5 0 0 5 5 5 0 Wound-induced protein WI12 XRCC4 PF06632.12 gi|154151034|ref|YP_001404652.1| - 2 7.2 3.2 83 1.9 0.0 3.9 5 0 0 5 5 5 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 DUF5590 PF17881.1 gi|154151034|ref|YP_001404652.1| - 4.8 7.3 14.5 36 4.5 0.2 4.5 4 0 0 4 4 4 0 Domain of unknown function (DUF5590) RsbRD_N PF14361.6 gi|154151035|ref|YP_001404653.1| - 8.4e-28 97.1 1.3 1.9e-27 96.0 0.5 2.0 2 0 0 2 2 2 1 RsbT co-antagonist protein rsbRD N-terminal domain STAS PF01740.21 gi|154151035|ref|YP_001404653.1| - 1.3e-08 34.5 0.1 2.4e-08 33.6 0.1 1.5 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 gi|154151036|ref|YP_001404654.1| - 2.8e-05 23.7 0.1 3.9e-05 23.3 0.1 1.3 1 1 0 1 1 1 1 STAS domain STAS_2 PF13466.6 gi|154151036|ref|YP_001404654.1| - 0.012 15.9 0.2 0.016 15.5 0.2 1.2 1 0 0 1 1 1 0 STAS domain HATPase_c PF02518.26 gi|154151037|ref|YP_001404655.1| - 2e-08 34.7 0.0 2.6e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|154151037|ref|YP_001404655.1| - 5.5e-05 23.1 0.0 6.7e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SbcCD_C PF13558.6 gi|154151037|ref|YP_001404655.1| - 0.063 13.5 0.0 0.73 10.1 0.0 2.1 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ECH_2 PF16113.5 gi|154151037|ref|YP_001404655.1| - 0.088 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase SpoIIE PF07228.12 gi|154151038|ref|YP_001404656.1| - 1.5e-13 51.1 0.4 6e-12 45.9 0.3 2.8 2 1 0 2 2 2 1 Stage II sporulation protein E (SpoIIE) HATPase_c_2 PF13581.6 gi|154151038|ref|YP_001404656.1| - 2.6e-05 24.2 0.0 4.7e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|154151039|ref|YP_001404657.1| - 2.8e-57 191.4 15.4 3.1e-14 53.1 0.0 7.4 7 0 0 7 7 7 5 PAS domain PAS_3 PF08447.12 gi|154151039|ref|YP_001404657.1| - 2.2e-52 175.3 4.9 1.4e-20 73.4 0.1 6.7 6 0 0 6 6 6 3 PAS fold PAS PF00989.25 gi|154151039|ref|YP_001404657.1| - 3.6e-51 171.9 1.5 2.4e-15 56.5 0.1 6.6 6 0 0 6 6 6 5 PAS fold PAS_4 PF08448.10 gi|154151039|ref|YP_001404657.1| - 2e-42 143.9 0.2 1e-12 48.2 0.0 6.8 6 0 0 6 6 6 6 PAS fold PAS_8 PF13188.7 gi|154151039|ref|YP_001404657.1| - 8.6e-41 137.3 1.5 4.2e-09 36.2 0.0 5.8 5 0 0 5 5 5 4 PAS domain HisKA_2 PF07568.12 gi|154151039|ref|YP_001404657.1| - 9.9e-30 102.5 1.9 9.9e-30 102.5 1.9 3.6 3 0 0 3 3 3 1 Histidine kinase HATPase_c PF02518.26 gi|154151039|ref|YP_001404657.1| - 6e-16 58.9 2.2 8.4e-08 32.7 0.3 3.0 2 1 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|154151039|ref|YP_001404657.1| - 1.9e-14 53.7 0.0 3.7e-07 30.1 0.0 3.3 2 0 0 2 2 2 2 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|154151039|ref|YP_001404657.1| - 1.3e-05 25.8 6.1 3.9e-05 24.3 0.1 3.5 3 0 0 3 3 2 1 HWE histidine kinase DarA_N PF18788.1 gi|154151039|ref|YP_001404657.1| - 5.8e-05 23.1 0.7 1.8 8.7 0.0 3.9 3 0 0 3 3 3 2 Defence against restriction A N-terminal Ephrin PF00812.17 gi|154151039|ref|YP_001404657.1| - 0.00048 20.1 0.5 8.7 6.3 0.0 3.3 3 0 0 3 3 3 1 Ephrin DUF5334 PF17268.2 gi|154151039|ref|YP_001404657.1| - 0.0072 16.6 0.2 1.3e+02 3.0 0.0 4.9 4 0 0 4 4 4 0 Family of unknown function (DUF5334) ZapB PF06005.12 gi|154151039|ref|YP_001404657.1| - 0.039 14.4 2.7 11 6.6 2.7 3.1 1 1 0 1 1 1 0 Cell division protein ZapB HATPase_c_3 PF13589.6 gi|154151039|ref|YP_001404657.1| - 0.089 12.6 0.0 2.2 8.1 0.0 2.6 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IFN-gamma PF00714.17 gi|154151039|ref|YP_001404657.1| - 0.2 11.5 2.4 56 3.6 0.1 3.8 3 0 0 3 3 3 0 Interferon gamma YmgB PF10798.8 gi|154151039|ref|YP_001404657.1| - 0.39 10.6 8.5 29 4.6 0.1 4.5 4 0 0 4 4 3 0 Biofilm development protein YmgB/AriR HAUS-augmin3 PF14932.6 gi|154151039|ref|YP_001404657.1| - 0.81 9.2 11.0 0.15 11.6 7.0 1.7 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 DASH_Dam1 PF08653.10 gi|154151039|ref|YP_001404657.1| - 1.8 8.4 3.1 20 5.1 0.0 3.3 3 0 0 3 3 3 0 DASH complex subunit Dam1 Prominin PF05478.11 gi|154151039|ref|YP_001404657.1| - 8.5 4.2 9.0 5.1 4.9 3.9 2.1 2 0 0 2 2 2 0 Prominin Response_reg PF00072.24 gi|154151040|ref|YP_001404658.1| - 4.7e-22 78.3 0.0 9.9e-22 77.2 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|154151040|ref|YP_001404658.1| - 1.3e-19 70.5 0.0 1.5e-12 47.8 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|154151040|ref|YP_001404658.1| - 1.7e-17 63.4 0.0 6.7e-08 32.5 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|154151040|ref|YP_001404658.1| - 3.8e-15 56.0 0.1 5.9e-07 29.7 0.0 2.3 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|154151040|ref|YP_001404658.1| - 5.7e-08 32.6 0.2 0.0025 17.8 0.1 2.9 3 0 0 3 3 3 2 PAS domain PAS_10 PF13596.6 gi|154151040|ref|YP_001404658.1| - 0.00031 21.3 0.0 0.00061 20.3 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|154151040|ref|YP_001404658.1| - 0.0014 18.9 0.0 0.89 9.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold T2SSE PF00437.20 gi|154151043|ref|YP_001404661.1| - 2e-43 148.4 0.0 3.3e-43 147.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|154151043|ref|YP_001404661.1| - 0.0003 20.5 0.0 0.00076 19.2 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|154151043|ref|YP_001404661.1| - 0.017 15.7 0.0 0.84 10.1 0.0 3.1 3 0 0 3 3 3 0 ABC transporter PYRIN PF02758.16 gi|154151043|ref|YP_001404661.1| - 0.15 12.2 1.1 0.43 10.8 0.1 2.2 3 0 0 3 3 3 0 PAAD/DAPIN/Pyrin domain AAA_23 PF13476.6 gi|154151043|ref|YP_001404661.1| - 0.35 11.3 0.0 0.35 11.3 0.0 2.7 4 0 0 4 4 4 0 AAA domain E1-E2_ATPase PF00122.20 gi|154151044|ref|YP_001404662.1| - 9.9e-47 158.8 0.3 9.9e-47 158.8 0.3 4.2 5 0 0 5 5 5 1 E1-E2 ATPase Hydrolase PF00702.26 gi|154151044|ref|YP_001404662.1| - 4.7e-22 79.3 1.2 9.2e-22 78.4 1.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|154151044|ref|YP_001404662.1| - 4.3e-11 42.3 0.0 9.2e-11 41.3 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|154151044|ref|YP_001404662.1| - 4.8e-06 26.5 0.7 2.8e-05 24.0 0.9 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|154151044|ref|YP_001404662.1| - 0.088 13.2 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase GAF_2 PF13185.6 gi|154151045|ref|YP_001404663.1| - 3.1e-21 76.1 0.0 5.1e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.24 gi|154151045|ref|YP_001404663.1| - 1.2e-20 73.7 0.0 4e-20 72.1 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|154151045|ref|YP_001404663.1| - 6.6e-19 68.1 1.8 4.8e-09 36.4 0.1 3.0 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.7 gi|154151045|ref|YP_001404663.1| - 1.4e-16 60.1 0.5 4.2e-08 33.0 0.0 3.1 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|154151045|ref|YP_001404663.1| - 6.4e-12 46.0 0.7 1.8e-11 44.5 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|154151045|ref|YP_001404663.1| - 2.2e-11 43.7 0.0 0.00018 21.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|154151045|ref|YP_001404663.1| - 1.3e-07 31.9 0.0 0.028 14.7 0.0 2.7 2 0 0 2 2 2 2 PAS fold NifZ PF04319.13 gi|154151045|ref|YP_001404663.1| - 0.0083 15.9 0.0 11 5.8 0.0 3.9 4 0 0 4 4 4 1 NifZ domain HisKA PF00512.25 gi|154151045|ref|YP_001404663.1| - 0.052 13.6 0.1 0.13 12.3 0.1 1.7 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|154151045|ref|YP_001404663.1| - 0.073 13.7 0.0 0.14 12.8 0.0 1.5 1 0 0 1 1 1 0 GAF domain MEKHLA PF08670.11 gi|154151045|ref|YP_001404663.1| - 0.18 11.7 0.0 1.9 8.4 0.0 2.3 2 0 0 2 2 2 0 MEKHLA domain Sod_Fe_C PF02777.18 gi|154151046|ref|YP_001404664.1| - 6.9e-34 116.1 0.5 1.2e-33 115.3 0.1 1.6 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|154151046|ref|YP_001404664.1| - 2.6e-28 98.3 3.0 4.3e-28 97.6 3.0 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Pyr_redox_2 PF07992.14 gi|154151047|ref|YP_001404665.1| - 1.4e-55 188.6 0.0 1.8e-55 188.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|154151047|ref|YP_001404665.1| - 3.4e-25 88.4 0.0 6.3e-25 87.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|154151047|ref|YP_001404665.1| - 2.6e-17 63.1 3.0 3.6e-13 49.9 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|154151047|ref|YP_001404665.1| - 4.3e-15 55.8 0.0 1.4e-08 34.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|154151047|ref|YP_001404665.1| - 9.2e-08 31.6 4.1 0.00021 20.5 1.5 3.7 3 1 0 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|154151047|ref|YP_001404665.1| - 9.5e-06 24.6 1.0 0.017 13.9 0.6 3.6 3 1 1 4 4 4 2 HI0933-like protein FAD_oxidored PF12831.7 gi|154151047|ref|YP_001404665.1| - 1.1e-05 25.0 2.8 0.00026 20.5 1.7 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|154151047|ref|YP_001404665.1| - 2.8e-05 24.2 2.5 0.022 15.0 0.8 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|154151047|ref|YP_001404665.1| - 4.5e-05 22.7 7.6 0.00027 20.2 3.4 2.7 2 1 1 3 3 3 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|154151047|ref|YP_001404665.1| - 0.0002 20.7 0.1 0.062 12.6 0.5 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|154151047|ref|YP_001404665.1| - 0.00065 19.0 0.1 1.9 7.6 0.0 3.0 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 gi|154151047|ref|YP_001404665.1| - 0.011 15.4 7.8 0.026 14.1 3.5 2.6 2 1 1 3 3 3 0 FAD dependent oxidoreductase XdhC_C PF13478.6 gi|154151047|ref|YP_001404665.1| - 0.11 13.0 0.2 3.7 8.1 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain Thi4 PF01946.17 gi|154151047|ref|YP_001404665.1| - 0.15 11.2 0.4 0.29 10.3 0.4 1.4 1 0 0 1 1 1 0 Thi4 family Lycopene_cycl PF05834.12 gi|154151047|ref|YP_001404665.1| - 0.2 10.7 3.5 1.9 7.5 1.0 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|154151047|ref|YP_001404665.1| - 0.22 11.5 1.9 5.8 6.9 0.2 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lipoprotein_15 PF03640.15 gi|154151048|ref|YP_001404666.1| - 8.8e-57 188.4 7.7 2.2e-15 55.9 0.1 4.1 4 0 0 4 4 4 4 Secreted repeat of unknown function DUF3185 PF11381.8 gi|154151048|ref|YP_001404666.1| - 0.09 12.8 0.2 0.2 11.7 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3185) Tegument_dsDNA PF12818.7 gi|154151049|ref|YP_001404667.1| - 0.063 12.4 0.0 0.075 12.2 0.0 1.1 1 0 0 1 1 1 0 dsDNA viral tegument protein PP2C PF00481.21 gi|154151053|ref|YP_001404671.1| - 0.016 14.9 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein phosphatase 2C ATP-cone PF03477.16 gi|154151054|ref|YP_001404672.1| - 1.7e-09 38.1 0.2 2.3e-09 37.7 0.2 1.2 1 0 0 1 1 1 1 ATP cone domain DUF2875 PF11394.8 gi|154151055|ref|YP_001404673.1| - 0.064 12.1 0.0 0.067 12.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2875) GFO_IDH_MocA PF01408.22 gi|154151056|ref|YP_001404674.1| - 3.5e-10 40.7 0.0 6e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|154151056|ref|YP_001404674.1| - 0.00032 20.7 0.1 0.00065 19.7 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain PBP PF01161.20 gi|154151057|ref|YP_001404675.1| - 3.9e-20 72.5 0.0 4.8e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF2769 PF10967.8 gi|154151058|ref|YP_001404676.1| - 3.7e-14 53.1 9.3 4.5e-14 52.9 9.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) Zn_Tnp_IS1595 PF12760.7 gi|154151058|ref|YP_001404676.1| - 0.054 13.5 2.2 0.054 13.5 2.2 1.8 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-Paramyx-P PF13008.7 gi|154151058|ref|YP_001404676.1| - 0.18 11.3 8.9 2.1 7.9 1.0 2.3 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein PAS_4 PF08448.10 gi|154151059|ref|YP_001404677.1| - 7.7e-48 161.3 0.0 1.8e-19 70.0 0.0 5.8 5 1 0 5 5 5 5 PAS fold PAS_8 PF13188.7 gi|154151059|ref|YP_001404677.1| - 3.3e-39 132.3 0.0 9.9e-09 35.0 0.0 5.7 5 0 0 5 5 5 5 PAS domain PAS_9 PF13426.7 gi|154151059|ref|YP_001404677.1| - 2.2e-38 130.7 0.0 8.8e-11 42.0 0.0 6.4 7 1 0 7 7 5 5 PAS domain PAS PF00989.25 gi|154151059|ref|YP_001404677.1| - 1.7e-34 118.2 0.0 9.8e-11 41.7 0.0 6.1 5 1 0 5 5 5 5 PAS fold PAS_3 PF08447.12 gi|154151059|ref|YP_001404677.1| - 1.3e-22 79.9 0.0 1.5e-11 44.4 0.0 4.7 5 0 0 5 5 5 3 PAS fold HisKA_2 PF07568.12 gi|154151059|ref|YP_001404677.1| - 5.2e-22 77.7 1.4 8.2e-21 73.9 0.3 2.7 2 0 0 2 2 2 1 Histidine kinase PAS_7 PF12860.7 gi|154151059|ref|YP_001404677.1| - 2e-13 50.5 0.0 0.003 17.7 0.0 5.4 5 0 0 5 5 5 3 PAS fold HATPase_c PF02518.26 gi|154151059|ref|YP_001404677.1| - 1.6e-05 25.4 0.0 7.6e-05 23.2 0.0 2.2 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|154151059|ref|YP_001404677.1| - 6.1e-05 23.7 0.3 6.1e-05 23.7 0.3 2.0 2 0 0 2 2 1 1 HWE histidine kinase MASE3 PF17159.4 gi|154151059|ref|YP_001404677.1| - 0.0031 17.2 13.2 0.0056 16.3 13.2 1.4 1 0 0 1 1 1 1 Membrane-associated sensor domain DUF3552 PF12072.8 gi|154151059|ref|YP_001404677.1| - 0.0043 16.5 17.1 0.046 13.1 8.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3552) DUF4200 PF13863.6 gi|154151059|ref|YP_001404677.1| - 0.016 15.6 6.1 0.016 15.6 6.1 3.1 4 0 0 4 4 3 0 Domain of unknown function (DUF4200) MLTR_LBD PF17765.1 gi|154151059|ref|YP_001404677.1| - 0.094 12.8 0.0 0.36 10.9 0.0 2.0 1 0 0 1 1 1 0 MmyB-like transcription regulator ligand binding domain UPF0449 PF15136.6 gi|154151059|ref|YP_001404677.1| - 0.23 12.0 8.9 2.1 8.9 1.3 2.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 Mod_r PF07200.13 gi|154151059|ref|YP_001404677.1| - 0.31 11.1 12.7 1.8 8.7 1.5 2.6 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF1664 PF07889.12 gi|154151059|ref|YP_001404677.1| - 0.4 10.7 2.3 17 5.5 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF3450 PF11932.8 gi|154151059|ref|YP_001404677.1| - 0.66 9.2 8.1 1.6 8.0 1.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Golgin_A5 PF09787.9 gi|154151059|ref|YP_001404677.1| - 1.1 8.6 12.5 1.5 8.2 3.9 2.5 2 0 0 2 2 2 0 Golgin subfamily A member 5 DUF3391 PF11871.8 gi|154151059|ref|YP_001404677.1| - 1.8 9.1 6.4 3.4 8.2 0.5 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3391) OmpH PF03938.14 gi|154151059|ref|YP_001404677.1| - 2.1 8.7 12.9 5.9 7.2 1.8 3.6 4 0 0 4 4 3 0 Outer membrane protein (OmpH-like) YabA PF06156.13 gi|154151059|ref|YP_001404677.1| - 2.1 9.0 9.5 3.6 8.3 0.3 2.8 2 0 0 2 2 2 0 Initiation control protein YabA Spc24 PF08286.11 gi|154151059|ref|YP_001404677.1| - 5.8 7.2 12.1 2.8 8.2 2.9 2.7 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 ATP-synt_DE PF00401.20 gi|154151059|ref|YP_001404677.1| - 7.7 6.9 11.6 69 3.8 6.6 3.7 2 1 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Response_reg PF00072.24 gi|154151060|ref|YP_001404678.1| - 1.6e-23 83.0 0.0 1.8e-23 82.8 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Cytochrom_B561 PF03188.16 gi|154151061|ref|YP_001404679.1| - 9.2e-12 45.3 13.7 7.8e-11 42.3 13.0 2.1 1 1 0 1 1 1 1 Eukaryotic cytochrome b561 Ni_hydr_CYTB PF01292.20 gi|154151061|ref|YP_001404679.1| - 0.0004 20.0 10.1 0.0027 17.3 10.1 2.0 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 gi|154151061|ref|YP_001404679.1| - 0.0017 18.9 11.1 0.52 10.9 5.4 3.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4405) VIT1 PF01988.19 gi|154151061|ref|YP_001404679.1| - 0.009 15.9 2.7 1.3 8.8 0.1 2.3 2 0 0 2 2 2 2 VIT family DUF4079 PF13301.6 gi|154151061|ref|YP_001404679.1| - 0.0094 16.1 14.4 3.3 7.9 14.4 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF4079) DUF3180 PF11377.8 gi|154151061|ref|YP_001404679.1| - 0.012 15.8 7.7 0.65 10.1 2.7 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3180) DUF420 PF04238.12 gi|154151061|ref|YP_001404679.1| - 0.053 13.8 11.6 0.37 11.1 11.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF420) DUF4149 PF13664.6 gi|154151061|ref|YP_001404679.1| - 0.8 10.1 6.5 2.3 8.6 2.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) Abhydrolase_9_N PF15420.6 gi|154151061|ref|YP_001404679.1| - 0.96 9.4 7.9 2.1 8.3 7.9 1.6 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus Intg_mem_TP0381 PF09529.10 gi|154151061|ref|YP_001404679.1| - 0.98 8.9 13.9 0.052 13.1 1.1 2.5 1 1 1 2 2 2 0 Integral membrane protein (intg_mem_TP0381) DUF3522 PF12036.8 gi|154151061|ref|YP_001404679.1| - 1.2 9.4 9.2 2.1 8.6 0.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3522) FeoB_associated PF12669.7 gi|154151061|ref|YP_001404679.1| - 3.5 8.1 12.4 3.1 8.3 0.4 3.3 3 0 0 3 3 3 0 FeoB-associated Cys-rich membrane protein CitMHS PF03600.16 gi|154151061|ref|YP_001404679.1| - 5.6 6.1 14.7 0.97 8.6 8.4 2.0 1 1 1 2 2 2 0 Citrate transporter Glycophorin_A PF01102.18 gi|154151061|ref|YP_001404679.1| - 7.3 6.9 10.4 1 9.7 1.0 2.4 1 1 1 2 2 2 0 Glycophorin A DUF373 PF04123.13 gi|154151061|ref|YP_001404679.1| - 7.7 5.9 13.5 3.9 6.8 1.3 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF373) DUF2304 PF10066.9 gi|154151061|ref|YP_001404679.1| - 9.7 6.5 11.2 41 4.5 4.7 2.9 1 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2304) DUF4131 PF13567.6 gi|154151061|ref|YP_001404679.1| - 9.9 5.8 12.7 7.9 6.1 1.8 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) PAS_9 PF13426.7 gi|154151063|ref|YP_001404681.1| - 5.4e-51 171.2 0.1 1.5e-10 41.3 0.0 6.9 6 1 0 6 6 6 5 PAS domain PAS_4 PF08448.10 gi|154151063|ref|YP_001404681.1| - 2.5e-50 169.3 0.0 4.3e-11 43.1 0.0 6.6 6 0 0 6 6 6 6 PAS fold PAS_3 PF08447.12 gi|154151063|ref|YP_001404681.1| - 1.1e-41 141.0 0.0 6.6e-20 71.2 0.0 5.6 5 0 0 5 5 5 4 PAS fold PAS PF00989.25 gi|154151063|ref|YP_001404681.1| - 1.3e-40 137.9 0.0 5.3e-07 29.6 0.0 6.3 6 0 0 6 6 6 5 PAS fold GAF_2 PF13185.6 gi|154151063|ref|YP_001404681.1| - 2.5e-26 92.6 0.0 3.8e-25 88.8 0.0 2.5 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|154151063|ref|YP_001404681.1| - 3e-20 71.8 0.1 0.00059 19.8 0.0 5.8 5 0 0 5 5 5 5 PAS domain Response_reg PF00072.24 gi|154151063|ref|YP_001404681.1| - 8e-15 55.0 0.0 2e-14 53.7 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|154151063|ref|YP_001404681.1| - 4.7e-14 52.8 0.1 1.1e-13 51.6 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|154151063|ref|YP_001404681.1| - 8.5e-12 45.8 0.0 3.1e-11 44.0 0.0 2.1 2 0 0 2 2 1 1 GAF domain GAF_3 PF13492.6 gi|154151063|ref|YP_001404681.1| - 3.6e-05 24.1 0.0 0.043 14.2 0.0 3.4 3 0 0 3 3 3 1 GAF domain HATPase_c_5 PF14501.6 gi|154151063|ref|YP_001404681.1| - 0.0054 16.6 0.0 0.018 15.0 0.0 1.8 1 0 0 1 1 1 1 GHKL domain SpoVT_C PF15714.5 gi|154151063|ref|YP_001404681.1| - 0.012 15.6 0.0 0.7 9.9 0.0 3.5 4 0 0 4 4 3 0 Stage V sporulation protein T C-terminal, transcription factor HATPase_c_2 PF13581.6 gi|154151063|ref|YP_001404681.1| - 0.048 13.6 1.0 0.084 12.8 0.0 1.9 2 0 0 2 2 1 0 Histidine kinase-like ATPase domain Spc7 PF08317.11 gi|154151063|ref|YP_001404681.1| - 0.12 11.2 8.1 0.78 8.6 0.8 2.7 2 0 0 2 2 2 0 Spc7 kinetochore protein Stork_head PF10264.9 gi|154151063|ref|YP_001404681.1| - 0.13 12.5 0.1 0.33 11.1 0.1 1.7 1 0 0 1 1 1 0 Winged helix Storkhead-box1 domain DUF3552 PF12072.8 gi|154151063|ref|YP_001404681.1| - 0.22 10.9 18.4 0.26 10.7 6.1 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF3552) SHE3 PF17078.5 gi|154151063|ref|YP_001404681.1| - 0.25 11.0 9.0 1.3 8.7 1.1 2.9 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 Mod_r PF07200.13 gi|154151063|ref|YP_001404681.1| - 0.33 11.0 15.8 0.085 13.0 1.2 3.2 4 0 0 4 4 3 0 Modifier of rudimentary (Mod(r)) protein HisKA PF00512.25 gi|154151063|ref|YP_001404681.1| - 0.39 10.8 0.0 0.39 10.8 0.0 4.4 5 0 0 5 5 5 0 His Kinase A (phospho-acceptor) domain Spore_III_AB PF09548.10 gi|154151063|ref|YP_001404681.1| - 0.63 10.1 5.5 0.23 11.6 0.5 2.9 3 0 0 3 3 2 0 Stage III sporulation protein AB (spore_III_AB) OmpH PF03938.14 gi|154151063|ref|YP_001404681.1| - 2.2 8.6 20.4 0.88 9.9 1.0 5.0 5 0 0 5 5 5 0 Outer membrane protein (OmpH-like) YCII PF03795.14 gi|154151064|ref|YP_001404682.1| - 1.1e-07 32.2 0.0 1.2e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 YCII-related domain Spt5-NGN PF03439.13 gi|154151064|ref|YP_001404682.1| - 0.065 13.1 0.1 0.092 12.6 0.1 1.2 1 0 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section GDE_C PF06202.14 gi|154151065|ref|YP_001404683.1| - 1.3e-76 258.0 0.0 2e-76 257.4 0.0 1.2 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|154151065|ref|YP_001404683.1| - 3.6e-22 78.9 0.0 6.1e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Glyco_hydro_100 PF12899.7 gi|154151065|ref|YP_001404683.1| - 0.0019 17.0 0.0 1.3 7.6 0.0 2.2 2 0 0 2 2 2 2 Alkaline and neutral invertase Glyco_hydro_63 PF03200.16 gi|154151065|ref|YP_001404683.1| - 0.015 14.1 0.0 0.022 13.5 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 63 C-terminal domain Glyco_hydro_36 PF17167.4 gi|154151065|ref|YP_001404683.1| - 0.046 12.4 0.0 0.68 8.6 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase 36 superfamily, catalytic domain Glycos_transf_1 PF00534.20 gi|154151066|ref|YP_001404684.1| - 2.9e-35 121.3 0.0 4e-35 120.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|154151066|ref|YP_001404684.1| - 2.9e-29 102.2 0.1 6.7e-28 97.8 0.0 2.7 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|154151066|ref|YP_001404684.1| - 5.1e-23 82.0 0.0 8.5e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|154151066|ref|YP_001404684.1| - 4e-22 79.4 0.0 1.3e-21 77.7 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|154151066|ref|YP_001404684.1| - 3.9e-10 39.9 0.0 5.5e-09 36.1 0.0 2.6 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|154151066|ref|YP_001404684.1| - 5e-07 30.0 0.0 1.1e-06 28.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|154151066|ref|YP_001404684.1| - 0.0027 17.7 0.0 0.028 14.5 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|154151067|ref|YP_001404685.1| - 9.4e-35 119.7 0.0 1.3e-34 119.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|154151067|ref|YP_001404685.1| - 2.1e-23 83.2 0.0 3.2e-23 82.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|154151067|ref|YP_001404685.1| - 5e-22 78.7 0.3 1.8e-21 76.9 0.3 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.11 gi|154151067|ref|YP_001404685.1| - 7e-17 61.9 0.4 2e-10 40.8 0.1 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|154151067|ref|YP_001404685.1| - 7.1e-12 46.1 0.0 2.5e-11 44.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|154151067|ref|YP_001404685.1| - 0.0098 16.3 0.0 0.025 14.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Bse634I PF07832.11 gi|154151067|ref|YP_001404685.1| - 0.13 11.5 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Cfr10I/Bse634I restriction endonuclease ADP_PFK_GK PF04587.15 gi|154151068|ref|YP_001404686.1| - 2.9e-52 177.7 0.0 9.1e-52 176.0 0.0 1.7 1 1 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region DUF3417 PF11897.8 gi|154151069|ref|YP_001404687.1| - 1.1e-37 128.8 2.7 3.2e-37 127.3 0.2 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.20 gi|154151069|ref|YP_001404687.1| - 3.2e-25 88.6 0.0 2.3e-19 69.2 0.0 3.5 2 1 0 3 3 3 2 Carbohydrate phosphorylase PAS_4 PF08448.10 gi|154151070|ref|YP_001404688.1| - 3.6e-34 117.3 0.1 1.2e-12 48.0 0.0 5.1 4 1 0 4 4 4 4 PAS fold PAS PF00989.25 gi|154151070|ref|YP_001404688.1| - 1.3e-22 79.9 0.9 4.2e-12 46.1 0.0 4.8 5 0 0 5 5 4 3 PAS fold HisKA_2 PF07568.12 gi|154151070|ref|YP_001404688.1| - 5e-21 74.6 0.1 2.3e-20 72.5 0.1 2.3 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.7 gi|154151070|ref|YP_001404688.1| - 3.7e-18 65.7 3.7 3.5e-07 30.4 0.0 5.6 6 1 0 6 6 6 3 PAS domain PAS_3 PF08447.12 gi|154151070|ref|YP_001404688.1| - 1.4e-16 60.5 0.0 6.5e-07 29.6 0.0 3.7 3 0 0 3 3 3 3 PAS fold GAF_2 PF13185.6 gi|154151070|ref|YP_001404688.1| - 2.2e-15 57.2 0.1 2.8e-14 53.6 0.0 2.9 4 0 0 4 4 2 1 GAF domain PAS_8 PF13188.7 gi|154151070|ref|YP_001404688.1| - 2.2e-13 49.9 0.0 9.3e-05 22.4 0.0 3.8 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|154151070|ref|YP_001404688.1| - 2.2e-10 41.0 0.0 6.7e-10 39.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|154151070|ref|YP_001404688.1| - 1.1e-09 38.3 0.0 2.9e-09 36.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|154151070|ref|YP_001404688.1| - 6.6e-09 35.9 0.7 2.3e-06 27.7 0.0 4.3 4 1 0 4 4 4 1 PAS fold GAF PF01590.26 gi|154151070|ref|YP_001404688.1| - 1.8e-08 35.1 0.1 6.2e-08 33.3 0.1 2.0 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|154151070|ref|YP_001404688.1| - 2.7e-06 27.7 0.0 9.5e-06 26.0 0.0 2.0 2 0 0 2 2 1 1 GAF domain HWE_HK PF07536.14 gi|154151070|ref|YP_001404688.1| - 5.3e-05 23.9 1.8 0.00012 22.7 0.1 2.5 3 0 0 3 3 2 1 HWE histidine kinase PAS_10 PF13596.6 gi|154151070|ref|YP_001404688.1| - 0.00032 21.2 0.1 2.3 8.8 0.0 3.7 5 0 0 5 5 4 2 PAS domain HATPase_c_3 PF13589.6 gi|154151070|ref|YP_001404688.1| - 0.079 12.8 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3552 PF12072.8 gi|154151070|ref|YP_001404688.1| - 0.12 11.8 2.8 0.31 10.4 1.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Response_reg PF00072.24 gi|154151071|ref|YP_001404689.1| - 4.6e-23 81.5 1.2 1.6e-22 79.8 0.2 2.3 2 1 1 3 3 3 1 Response regulator receiver domain PadR PF03551.14 gi|154151071|ref|YP_001404689.1| - 3.4e-06 26.9 0.9 6.7e-06 26.0 0.9 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|154151071|ref|YP_001404689.1| - 0.024 14.5 0.9 0.46 10.4 0.4 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF99 PF01949.16 gi|154151071|ref|YP_001404689.1| - 0.057 12.8 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF99 Penicillinase_R PF03965.16 gi|154151071|ref|YP_001404689.1| - 0.063 13.6 0.1 0.14 12.5 0.1 1.6 1 1 0 1 1 1 0 Penicillinase repressor TBPIP PF07106.13 gi|154151071|ref|YP_001404689.1| - 0.12 12.4 0.2 0.28 11.1 0.2 1.6 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain Ig_2 PF13895.6 gi|154151072|ref|YP_001404690.1| - 0.012 15.9 0.0 0.015 15.6 0.0 1.1 1 0 0 1 1 1 0 Immunoglobulin domain ArsA_HSP20 PF17886.1 gi|154151072|ref|YP_001404690.1| - 0.041 13.4 0.0 0.057 13.0 0.0 1.4 1 1 0 1 1 1 0 HSP20-like domain found in ArsA GvpH PF05455.11 gi|154151072|ref|YP_001404690.1| - 0.062 13.4 0.0 0.066 13.3 0.0 1.0 1 0 0 1 1 1 0 GvpH PMSR PF01625.21 gi|154151073|ref|YP_001404691.1| - 1.4e-61 207.1 1.0 1.9e-61 206.7 1.0 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Glutaredoxin PF00462.24 gi|154151073|ref|YP_001404691.1| - 8e-11 42.0 0.0 1.6e-10 41.1 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin SH3BGR PF04908.15 gi|154151073|ref|YP_001404691.1| - 0.00045 20.3 0.6 0.015 15.4 0.0 2.6 3 0 0 3 3 3 1 SH3-binding, glutamic acid-rich protein DUF836 PF05768.14 gi|154151073|ref|YP_001404691.1| - 0.022 15.2 0.0 0.039 14.4 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) GST_N_3 PF13417.6 gi|154151073|ref|YP_001404691.1| - 0.083 13.3 0.0 0.41 11.1 0.0 2.0 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain DJ-1_PfpI PF01965.24 gi|154151074|ref|YP_001404692.1| - 3.5e-51 173.3 0.1 3.9e-51 173.1 0.1 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|154151074|ref|YP_001404692.1| - 6.1e-05 22.9 0.0 6.6e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_5 PF13507.6 gi|154151074|ref|YP_001404692.1| - 0.0091 15.1 0.0 0.027 13.6 0.0 1.7 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|154151074|ref|YP_001404692.1| - 0.01 15.4 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|154151074|ref|YP_001404692.1| - 0.025 14.3 0.0 0.15 11.8 0.0 2.0 1 1 0 1 1 1 0 Peptidase C26 RIIa PF02197.17 gi|154151074|ref|YP_001404692.1| - 0.055 13.1 1.5 1.6 8.4 0.5 2.6 2 0 0 2 2 2 0 Regulatory subunit of type II PKA R-subunit ThiJ_like PF17124.5 gi|154151074|ref|YP_001404692.1| - 0.077 12.7 0.0 0.24 11.1 0.0 1.8 1 1 0 1 1 1 0 ThiJ/PfpI family-like HEAT_2 PF13646.6 gi|154151075|ref|YP_001404693.1| - 0.0046 17.3 1.7 0.029 14.8 1.4 2.2 1 1 1 2 2 2 1 HEAT repeats Cnd1 PF12717.7 gi|154151075|ref|YP_001404693.1| - 0.019 15.0 0.0 0.057 13.5 0.0 1.8 1 1 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 CARD PF00619.21 gi|154151075|ref|YP_001404693.1| - 0.13 12.3 0.0 0.72 9.9 0.0 2.1 2 1 0 2 2 2 0 Caspase recruitment domain DUF3105 PF11303.8 gi|154151076|ref|YP_001404694.1| - 0.12 12.6 0.0 0.17 12.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3105) DUF3970 PF13113.6 gi|154151076|ref|YP_001404694.1| - 0.12 12.6 0.4 1.3 9.3 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3970) HTH_24 PF13412.6 gi|154151077|ref|YP_001404695.1| - 1.4e-08 34.2 0.0 1.7e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|154151077|ref|YP_001404695.1| - 3.5e-07 30.0 0.1 4.2e-07 29.8 0.1 1.1 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|154151077|ref|YP_001404695.1| - 2.6e-06 27.2 0.0 3.1e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|154151077|ref|YP_001404695.1| - 6.7e-06 25.8 0.1 9.3e-06 25.3 0.1 1.1 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|154151077|ref|YP_001404695.1| - 8.3e-06 25.4 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 gi|154151077|ref|YP_001404695.1| - 1.6e-05 24.7 0.0 2e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.12 gi|154151077|ref|YP_001404695.1| - 1.7e-05 24.7 0.1 2.5e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|154151077|ref|YP_001404695.1| - 9.5e-05 22.4 0.0 0.00013 22.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|154151077|ref|YP_001404695.1| - 0.00017 21.2 0.8 0.0005 19.7 0.8 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|154151077|ref|YP_001404695.1| - 0.00028 20.8 0.0 0.00033 20.6 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GerE PF00196.19 gi|154151077|ref|YP_001404695.1| - 0.00029 20.3 0.9 0.00081 18.9 0.9 1.7 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_12 PF08461.10 gi|154151077|ref|YP_001404695.1| - 0.00047 20.0 0.5 0.00075 19.4 0.5 1.4 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain DUF3489 PF11994.8 gi|154151077|ref|YP_001404695.1| - 0.00061 19.8 0.1 0.00077 19.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) Sigma70_r4 PF04545.16 gi|154151077|ref|YP_001404695.1| - 0.00082 18.8 0.4 0.0026 17.3 0.1 2.0 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|154151077|ref|YP_001404695.1| - 0.0014 18.4 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Mga PF08280.11 gi|154151077|ref|YP_001404695.1| - 0.0017 18.3 0.1 0.0024 17.9 0.1 1.2 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain RepL PF05732.11 gi|154151077|ref|YP_001404695.1| - 0.0022 17.5 0.1 0.0031 17.0 0.1 1.2 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) Fe_dep_repress PF01325.19 gi|154151077|ref|YP_001404695.1| - 0.0029 17.8 0.1 0.004 17.3 0.1 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Crp PF00325.20 gi|154151077|ref|YP_001404695.1| - 0.0035 17.0 0.0 0.0053 16.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family Penicillinase_R PF03965.16 gi|154151077|ref|YP_001404695.1| - 0.0038 17.6 0.1 0.0041 17.5 0.1 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_27 PF13463.6 gi|154151077|ref|YP_001404695.1| - 0.006 17.0 0.1 0.0068 16.9 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|154151077|ref|YP_001404695.1| - 0.0062 16.3 0.0 0.0088 15.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 gi|154151077|ref|YP_001404695.1| - 0.0073 16.0 0.1 0.013 15.2 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|154151077|ref|YP_001404695.1| - 0.011 15.5 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.12 gi|154151077|ref|YP_001404695.1| - 0.012 16.0 0.1 0.015 15.7 0.1 1.1 1 0 0 1 1 1 0 FaeA-like protein HTH_5 PF01022.20 gi|154151077|ref|YP_001404695.1| - 0.013 15.3 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|154151077|ref|YP_001404695.1| - 0.013 15.5 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 gi|154151077|ref|YP_001404695.1| - 0.017 15.2 0.0 0.023 14.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|154151077|ref|YP_001404695.1| - 0.018 15.4 0.1 0.022 15.1 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator SgrR_N PF12793.7 gi|154151077|ref|YP_001404695.1| - 0.019 15.2 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term LexA_DNA_bind PF01726.16 gi|154151077|ref|YP_001404695.1| - 0.028 14.2 0.5 0.072 12.9 0.5 1.7 1 1 0 1 1 1 0 LexA DNA binding domain TrmB PF01978.19 gi|154151077|ref|YP_001404695.1| - 0.037 13.9 0.1 0.041 13.8 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|154151077|ref|YP_001404695.1| - 0.041 13.9 0.2 0.071 13.1 0.1 1.4 2 0 0 2 2 1 0 Helix-turn-helix domain DNA_binding_1 PF01035.20 gi|154151077|ref|YP_001404695.1| - 0.058 13.5 0.0 0.066 13.4 0.0 1.2 1 0 0 1 1 1 0 6-O-methylguanine DNA methyltransferase, DNA binding domain Metallophos_3 PF14582.6 gi|154151077|ref|YP_001404695.1| - 0.098 12.0 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily DUF3959 PF13105.6 gi|154151078|ref|YP_001404696.1| - 0.073 12.6 0.4 0.074 12.5 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3959) Glyco_hydro_57 PF03065.15 gi|154151079|ref|YP_001404697.1| - 2.1e-56 191.5 0.0 7.5e-56 189.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase family 57 Glycos_transf_1 PF00534.20 gi|154151080|ref|YP_001404698.1| - 7.5e-33 113.5 0.0 1.3e-32 112.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|154151080|ref|YP_001404698.1| - 1.9e-25 89.8 0.0 3e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|154151080|ref|YP_001404698.1| - 2.3e-23 83.1 0.1 1.1e-22 80.8 0.0 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.11 gi|154151080|ref|YP_001404698.1| - 3.1e-14 53.3 0.1 2.4e-08 34.0 0.1 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|154151080|ref|YP_001404698.1| - 1.6e-12 48.2 0.0 8.9e-12 45.7 0.0 2.2 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|154151080|ref|YP_001404698.1| - 0.00014 22.2 0.0 0.00034 20.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|154151080|ref|YP_001404698.1| - 0.003 17.6 0.0 0.0051 16.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Oxidored_FMN PF00724.20 gi|154151081|ref|YP_001404699.1| - 1.7e-83 280.7 0.0 1.9e-83 280.5 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family ICL PF00463.21 gi|154151081|ref|YP_001404699.1| - 0.1 11.1 0.0 0.16 10.5 0.0 1.2 1 0 0 1 1 1 0 Isocitrate lyase family AP_endonuc_2 PF01261.24 gi|154151081|ref|YP_001404699.1| - 0.11 11.9 0.1 0.68 9.3 0.2 2.0 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel PGK PF00162.19 gi|154151082|ref|YP_001404700.1| - 1.4e-147 491.6 0.0 1.6e-147 491.4 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase PsiE PF06146.12 gi|154151083|ref|YP_001404701.1| - 4.3e-15 55.8 6.9 4.3e-15 55.8 6.9 2.2 2 0 0 2 2 2 1 Phosphate-starvation-inducible E DUF4184 PF13803.6 gi|154151083|ref|YP_001404701.1| - 0.49 10.1 4.2 0.18 11.5 2.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) Fig1 PF12351.8 gi|154151083|ref|YP_001404701.1| - 1.5 8.7 5.3 0.4 10.6 2.4 1.5 1 1 1 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 Pox_A14 PF05767.12 gi|154151083|ref|YP_001404701.1| - 8.1 6.7 8.2 1.9 8.7 3.2 2.4 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 DUF998 PF06197.13 gi|154151086|ref|YP_001404704.1| - 0.11 12.1 4.5 0.13 11.9 4.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF998) ABC2_membrane_3 PF12698.7 gi|154151086|ref|YP_001404704.1| - 0.14 11.2 6.8 0.16 11.0 6.8 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein YtpI PF14007.6 gi|154151086|ref|YP_001404704.1| - 0.22 11.7 5.4 0.3 11.3 5.4 1.2 1 0 0 1 1 1 0 YtpI-like protein Phage_holin_3_6 PF07332.11 gi|154151086|ref|YP_001404704.1| - 1.1 9.3 5.1 1.4 9.0 5.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III LCM PF04072.14 gi|154151087|ref|YP_001404705.1| - 7.3e-54 182.6 0.1 9.6e-54 182.2 0.1 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase Endomucin PF07010.12 gi|154151088|ref|YP_001404706.1| - 0.088 12.8 10.9 0.1 12.6 10.9 1.1 1 0 0 1 1 1 0 Endomucin LPAM_1 PF08139.12 gi|154151088|ref|YP_001404706.1| - 0.18 12.3 2.1 0.52 10.9 2.1 1.8 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Atrophin-1 PF03154.15 gi|154151088|ref|YP_001404706.1| - 1.4 7.1 5.8 1.6 6.9 5.8 1.0 1 0 0 1 1 1 0 Atrophin-1 family PAS_9 PF13426.7 gi|154151091|ref|YP_001404709.1| - 2.4e-15 56.6 0.0 6.9e-15 55.2 0.0 1.7 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|154151091|ref|YP_001404709.1| - 3.9e-14 52.6 0.0 8.1e-14 51.6 0.0 1.5 1 0 0 1 1 1 1 PAS fold HTH_20 PF12840.7 gi|154151091|ref|YP_001404709.1| - 8.7e-11 41.7 0.0 1.3e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PAS_4 PF08448.10 gi|154151091|ref|YP_001404709.1| - 1.1e-09 38.5 0.0 1.7e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|154151091|ref|YP_001404709.1| - 9.6e-07 29.0 0.1 2.3e-06 27.8 0.1 1.6 1 0 0 1 1 1 1 PAS fold HTH_11 PF08279.12 gi|154151091|ref|YP_001404709.1| - 0.0011 18.8 0.1 0.0023 17.8 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|154151091|ref|YP_001404709.1| - 0.0028 17.2 0.0 0.0065 16.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|154151091|ref|YP_001404709.1| - 0.0031 17.3 0.1 0.0056 16.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PAS_6 PF08348.11 gi|154151091|ref|YP_001404709.1| - 0.0071 16.2 0.1 0.031 14.1 0.0 2.0 2 0 0 2 2 2 1 YheO-like PAS domain TFIIE_alpha PF02002.17 gi|154151091|ref|YP_001404709.1| - 0.0098 15.7 0.1 0.015 15.1 0.1 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_9 PF08221.11 gi|154151091|ref|YP_001404709.1| - 0.018 15.1 0.1 0.034 14.2 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain PAS_10 PF13596.6 gi|154151091|ref|YP_001404709.1| - 0.021 15.4 0.0 0.049 14.2 0.0 1.7 1 0 0 1 1 1 0 PAS domain sCache_3_3 PF17202.4 gi|154151091|ref|YP_001404709.1| - 0.028 14.8 0.0 0.062 13.7 0.0 1.6 1 0 0 1 1 1 0 Single cache domain 3 PAS_8 PF13188.7 gi|154151091|ref|YP_001404709.1| - 0.029 14.4 0.0 0.067 13.2 0.0 1.6 1 0 0 1 1 1 0 PAS domain MarR PF01047.22 gi|154151091|ref|YP_001404709.1| - 0.039 13.9 0.0 0.074 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family FaeA PF04703.12 gi|154151091|ref|YP_001404709.1| - 0.051 14.0 0.2 0.19 12.2 0.0 2.1 2 1 0 2 2 1 0 FaeA-like protein TrmB PF01978.19 gi|154151091|ref|YP_001404709.1| - 0.067 13.1 0.2 0.12 12.3 0.2 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|154151091|ref|YP_001404709.1| - 0.071 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|154151091|ref|YP_001404709.1| - 0.1 12.5 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_47 PF16221.5 gi|154151091|ref|YP_001404709.1| - 0.13 11.8 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 winged helix-turn-helix DUF3821 PF12863.7 gi|154151093|ref|YP_001404711.1| - 2.5e-65 220.3 0.2 3.1e-65 220.0 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) Glyco_hydro_19 PF00182.19 gi|154151093|ref|YP_001404711.1| - 0.0041 17.0 0.6 2 8.2 0.1 2.2 2 0 0 2 2 2 2 Chitinase class I CBS PF00571.28 gi|154151094|ref|YP_001404712.1| - 2.6e-26 91.8 4.8 1.4e-16 60.6 0.7 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|154151094|ref|YP_001404712.1| - 5.6e-13 48.8 8.8 2.2e-07 30.4 1.4 2.6 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_S55 PF05580.12 gi|154151094|ref|YP_001404712.1| - 0.2 11.6 0.7 18 5.2 0.0 2.2 2 0 0 2 2 2 0 SpoIVB peptidase S55 SH3_6 PF12913.7 gi|154151096|ref|YP_001404714.1| - 0.0045 16.5 0.0 0.0078 15.7 0.0 1.3 1 0 0 1 1 1 1 SH3 domain (SH3b1 type) Flavin_Reduct PF01613.18 gi|154151097|ref|YP_001404715.1| - 1.1e-19 71.1 0.0 1.2e-19 70.9 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain RVT_3 PF13456.6 gi|154151098|ref|YP_001404716.1| - 4e-15 55.7 0.0 4.5e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|154151098|ref|YP_001404716.1| - 4.3e-15 56.1 0.0 4.8e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 RNase H Borrelia_orfA PF02414.15 gi|154151098|ref|YP_001404716.1| - 0.044 13.5 0.1 0.054 13.1 0.1 1.1 1 0 0 1 1 1 0 Borrelia ORF-A DeoC PF01791.9 gi|154151099|ref|YP_001404717.1| - 4.9e-55 186.7 0.1 5.7e-55 186.5 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PEP_mutase PF13714.6 gi|154151099|ref|YP_001404717.1| - 0.053 13.0 0.4 0.28 10.6 0.1 2.0 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase DeoC PF01791.9 gi|154151100|ref|YP_001404718.1| - 2.3e-54 184.5 0.0 2.7e-54 184.3 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase TMP-TENI PF02581.17 gi|154151100|ref|YP_001404718.1| - 0.031 13.6 0.0 8.1 5.7 0.0 2.3 2 0 0 2 2 2 0 Thiamine monophosphate synthase DHQS PF01959.16 gi|154151101|ref|YP_001404719.1| - 3.3e-126 420.9 0.3 3.7e-126 420.8 0.3 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II PDH PF02153.17 gi|154151102|ref|YP_001404720.1| - 3.8e-42 144.1 0.0 4.7e-42 143.8 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|154151102|ref|YP_001404720.1| - 4.2e-06 27.3 0.6 0.0012 19.3 0.6 2.6 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 gi|154151102|ref|YP_001404720.1| - 0.0011 19.1 0.1 0.0019 18.3 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_2 PF03446.15 gi|154151102|ref|YP_001404720.1| - 0.0022 18.2 0.3 0.052 13.7 0.3 2.3 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|154151102|ref|YP_001404720.1| - 0.017 14.8 0.2 0.069 12.8 0.0 2.0 2 1 1 3 3 3 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|154151102|ref|YP_001404720.1| - 0.028 14.3 0.3 1.9 8.4 0.1 2.3 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDT PF00800.18 gi|154151103|ref|YP_001404721.1| - 7.4e-44 149.7 0.0 9.1e-44 149.4 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|154151103|ref|YP_001404721.1| - 1.3e-07 31.2 0.0 2.6e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 ACT domain EPSP_synthase PF00275.20 gi|154151104|ref|YP_001404722.1| - 1.2e-108 363.5 0.0 1.4e-108 363.3 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SKI PF01202.22 gi|154151105|ref|YP_001404723.1| - 4.3e-41 140.7 0.0 9.5e-41 139.5 0.0 1.6 1 0 0 1 1 1 1 Shikimate kinase Shikimate_dh_N PF08501.11 gi|154151105|ref|YP_001404723.1| - 1.9e-23 82.5 0.0 4.2e-23 81.4 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|154151105|ref|YP_001404723.1| - 6.1e-07 29.6 0.0 1.7e-06 28.2 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|154151105|ref|YP_001404723.1| - 7.3e-07 28.9 0.0 2.1e-06 27.4 0.0 1.8 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain F420_oxidored PF03807.17 gi|154151105|ref|YP_001404723.1| - 0.00041 20.9 0.0 0.0011 19.5 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|154151105|ref|YP_001404723.1| - 0.00045 19.6 0.0 0.0016 17.9 0.0 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AAA PF00004.29 gi|154151105|ref|YP_001404723.1| - 0.00081 19.8 0.0 0.0028 18.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|154151105|ref|YP_001404723.1| - 0.0013 18.9 0.0 0.03 14.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain Sacchrp_dh_NADP PF03435.18 gi|154151105|ref|YP_001404723.1| - 0.0024 18.1 0.0 0.0075 16.5 0.0 1.9 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Cytidylate_kin2 PF13189.6 gi|154151105|ref|YP_001404723.1| - 0.0034 17.5 0.0 0.0076 16.4 0.0 1.6 1 0 0 1 1 1 1 Cytidylate kinase-like family GFO_IDH_MocA PF01408.22 gi|154151105|ref|YP_001404723.1| - 0.004 18.0 0.0 0.0094 16.8 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold AAA_18 PF13238.6 gi|154151105|ref|YP_001404723.1| - 0.056 14.0 0.0 0.18 12.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|154151105|ref|YP_001404723.1| - 0.12 12.1 0.0 0.44 10.3 0.0 1.8 2 0 0 2 2 2 0 Cytidylate kinase RuvB_N PF05496.12 gi|154151105|ref|YP_001404723.1| - 0.14 11.9 0.0 0.4 10.4 0.0 1.8 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Chorismate_synt PF01264.21 gi|154151106|ref|YP_001404724.1| - 7.8e-132 438.9 1.5 1.1e-131 438.5 1.5 1.2 1 0 0 1 1 1 1 Chorismate synthase sCache_3_2 PF17203.4 gi|154151107|ref|YP_001404725.1| - 0.0023 18.1 0.1 0.0032 17.6 0.0 1.4 1 1 0 1 1 1 1 Single cache domain 3 sCache_3_3 PF17202.4 gi|154151107|ref|YP_001404725.1| - 0.0063 16.9 0.0 0.014 15.9 0.0 1.5 1 0 0 1 1 1 1 Single cache domain 3 Cache_3-Cache_2 PF17201.4 gi|154151107|ref|YP_001404725.1| - 0.0073 15.6 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain MFS_1 PF07690.16 gi|154151108|ref|YP_001404726.1| - 3.4e-42 144.7 57.4 7.4e-41 140.2 54.3 2.2 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|154151108|ref|YP_001404726.1| - 8e-08 31.6 16.9 8e-08 31.6 16.9 3.7 2 2 2 4 4 4 2 Sugar (and other) transporter DUF4231 PF14015.6 gi|154151108|ref|YP_001404726.1| - 0.13 12.7 0.4 0.13 12.7 0.4 5.3 3 2 1 4 4 4 0 Protein of unknown function (DUF4231) TetR_N PF00440.23 gi|154151109|ref|YP_001404727.1| - 5e-18 64.6 0.0 8.1e-18 64.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|154151109|ref|YP_001404727.1| - 8.2e-07 29.2 0.1 2.6e-06 27.7 0.1 1.9 1 1 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_37 PF18665.1 gi|154151109|ref|YP_001404727.1| - 0.0024 18.4 0.1 0.0045 17.6 0.1 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_7 PF02796.15 gi|154151109|ref|YP_001404727.1| - 0.04 14.0 0.3 0.13 12.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|154151109|ref|YP_001404727.1| - 0.063 12.8 0.0 0.24 11.0 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 Glyco_hydro_114 PF03537.13 gi|154151109|ref|YP_001404727.1| - 0.16 11.2 0.3 0.22 10.8 0.2 1.5 1 1 0 1 1 1 0 Glycoside-hydrolase family GH114 DUF2284 PF10050.9 gi|154151110|ref|YP_001404728.1| - 3.7e-47 160.1 0.0 4.9e-47 159.7 0.0 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) ECM1 PF05782.11 gi|154151110|ref|YP_001404728.1| - 0.081 11.9 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Extracellular matrix protein 1 (ECM1) Lactamase_B PF00753.27 gi|154151111|ref|YP_001404729.1| - 4.8e-11 43.0 0.1 2.4e-10 40.7 0.0 1.9 1 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|154151111|ref|YP_001404729.1| - 3.4e-08 33.3 0.0 4.6e-07 29.5 0.0 2.6 2 2 1 3 3 3 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|154151111|ref|YP_001404729.1| - 0.0037 17.2 0.0 1.2 9.0 0.0 2.3 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|154151111|ref|YP_001404729.1| - 0.034 13.6 0.0 0.084 12.3 0.0 1.6 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain Humanin PF15040.6 gi|154151111|ref|YP_001404729.1| - 0.18 11.3 0.0 0.35 10.3 0.0 1.5 1 0 0 1 1 1 0 Humanin family DHquinase_I PF01487.15 gi|154151112|ref|YP_001404730.1| - 3.2e-29 102.8 0.0 3.8e-29 102.6 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Sm_multidrug_ex PF06695.11 gi|154151113|ref|YP_001404731.1| - 8.4e-07 29.7 4.5 8.4e-07 29.7 4.5 2.1 1 1 1 2 2 2 1 Putative small multi-drug export protein Peptidase_U32 PF01136.19 gi|154151114|ref|YP_001404732.1| - 9.6e-116 384.9 0.0 1.1e-85 286.5 0.0 2.1 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|154151114|ref|YP_001404732.1| - 4.2e-17 62.7 0.0 7.1e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 Collagenase TIM PF00121.18 gi|154151115|ref|YP_001404733.1| - 8.9e-10 38.3 0.1 1.3e-08 34.6 0.0 2.0 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|154151115|ref|YP_001404733.1| - 6.4e-05 22.4 1.0 0.00011 21.6 1.0 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|154151115|ref|YP_001404733.1| - 0.015 14.8 0.4 0.025 14.0 0.1 1.5 2 0 0 2 2 2 0 Histidine biosynthesis protein CBS PF00571.28 gi|154151116|ref|YP_001404734.1| - 1.5e-25 89.4 0.1 2.1e-13 50.5 0.0 2.2 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|154151116|ref|YP_001404734.1| - 4.7e-12 45.8 0.2 1.1e-11 44.6 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|154151116|ref|YP_001404734.1| - 2.3e-11 43.9 0.3 4.4e-11 43.0 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|154151116|ref|YP_001404734.1| - 2.2e-06 27.6 0.2 3.9e-06 26.8 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|154151116|ref|YP_001404734.1| - 5.8e-05 22.9 0.5 0.00037 20.3 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|154151116|ref|YP_001404734.1| - 0.0014 18.6 0.1 0.003 17.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|154151116|ref|YP_001404734.1| - 0.0015 18.4 0.1 0.31 10.9 0.1 2.5 2 0 0 2 2 2 1 MarR family HTH_26 PF13443.6 gi|154151116|ref|YP_001404734.1| - 0.0024 18.3 0.0 0.0044 17.4 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.6 gi|154151116|ref|YP_001404734.1| - 0.0094 15.7 0.3 0.022 14.5 0.3 1.6 1 0 0 1 1 1 1 Homeodomain-like domain MqsA_antitoxin PF15731.5 gi|154151116|ref|YP_001404734.1| - 0.057 13.5 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_IclR PF09339.10 gi|154151116|ref|YP_001404734.1| - 0.063 13.1 0.3 0.14 12.0 0.3 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DRE2_N PF16803.5 gi|154151116|ref|YP_001404734.1| - 0.073 13.3 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Fe-S cluster assembly protein DRE2 N-terminus Sigma70_r4 PF04545.16 gi|154151116|ref|YP_001404734.1| - 0.089 12.3 0.6 0.16 11.5 0.6 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Pou PF00157.17 gi|154151116|ref|YP_001404734.1| - 0.11 12.5 0.3 0.98 9.4 0.2 2.3 2 1 0 2 2 2 0 Pou domain - N-terminal to homeobox domain HTH_24 PF13412.6 gi|154151116|ref|YP_001404734.1| - 0.25 10.9 1.3 0.38 10.4 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Adenine_deam_C PF13382.6 gi|154151117|ref|YP_001404735.1| - 2.1e-52 176.9 0.1 3e-52 176.4 0.1 1.2 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|154151117|ref|YP_001404735.1| - 2.9e-22 79.5 0.0 1.1e-10 41.4 0.2 2.4 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|154151117|ref|YP_001404735.1| - 6.7e-14 52.2 0.7 1.5e-06 27.9 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.20 gi|154151117|ref|YP_001404735.1| - 0.0052 17.1 0.1 0.042 14.2 0.0 2.2 2 0 0 2 2 2 1 Urease alpha-subunit, N-terminal domain Alph_Pro_TM PF09608.10 gi|154151118|ref|YP_001404736.1| - 0.011 15.6 0.1 0.012 15.4 0.1 1.3 1 1 0 1 1 1 0 Putative transmembrane protein (Alph_Pro_TM) DUF4625 PF15418.6 gi|154151118|ref|YP_001404736.1| - 0.062 13.5 0.0 0.077 13.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) DUF4832 PF16116.5 gi|154151118|ref|YP_001404736.1| - 0.067 13.0 0.0 0.071 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4832) Wzt_C PF14524.6 gi|154151118|ref|YP_001404736.1| - 0.11 12.6 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 Wzt C-terminal domain FliD_N PF02465.18 gi|154151118|ref|YP_001404736.1| - 0.15 12.7 0.0 0.21 12.3 0.0 1.2 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus AAA_31 PF13614.6 gi|154151119|ref|YP_001404737.1| - 8.7e-33 113.7 0.0 1.2e-32 113.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|154151119|ref|YP_001404737.1| - 4.9e-05 23.4 0.0 0.00057 19.9 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|154151119|ref|YP_001404737.1| - 0.0014 18.1 0.0 0.31 10.5 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|154151119|ref|YP_001404737.1| - 0.0041 16.6 0.1 0.83 9.1 0.0 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|154151119|ref|YP_001404737.1| - 0.0094 15.4 0.0 0.1 12.0 0.0 2.0 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|154151119|ref|YP_001404737.1| - 0.036 13.3 0.0 0.056 12.7 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ MCPsignal PF00015.21 gi|154151120|ref|YP_001404738.1| - 4.4e-43 147.1 60.5 7.6e-43 146.3 24.9 4.8 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|154151120|ref|YP_001404738.1| - 8e-14 51.8 0.6 4.7e-05 23.6 0.0 4.3 4 1 0 4 4 3 2 PAS fold PAS PF00989.25 gi|154151120|ref|YP_001404738.1| - 6e-11 42.3 0.0 0.00012 22.0 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|154151120|ref|YP_001404738.1| - 3.6e-09 36.8 0.0 4.9e-06 26.7 0.0 3.0 2 0 0 2 2 2 2 PAS domain HAMP PF00672.25 gi|154151120|ref|YP_001404738.1| - 1.2e-05 25.6 5.4 0.00091 19.6 0.2 5.0 5 1 0 5 5 4 1 HAMP domain PAS_8 PF13188.7 gi|154151120|ref|YP_001404738.1| - 1.6e-05 24.8 0.0 0.0049 16.9 0.0 2.7 2 0 0 2 2 2 1 PAS domain DUF948 PF06103.11 gi|154151120|ref|YP_001404738.1| - 0.00029 21.0 2.3 0.00029 21.0 2.3 6.1 4 2 2 6 6 5 2 Bacterial protein of unknown function (DUF948) LPP PF04728.13 gi|154151120|ref|YP_001404738.1| - 0.013 15.9 1.3 0.013 15.9 1.3 5.4 6 0 0 6 6 6 0 Lipoprotein leucine-zipper PAS_10 PF13596.6 gi|154151120|ref|YP_001404738.1| - 0.086 13.4 0.2 20 5.8 0.0 4.1 4 1 0 4 4 4 0 PAS domain DUF489 PF04356.12 gi|154151120|ref|YP_001404738.1| - 0.78 9.7 15.2 0.017 15.2 5.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF489) Spc7 PF08317.11 gi|154151120|ref|YP_001404738.1| - 2.9 6.7 40.7 0.06 12.2 8.1 3.8 3 1 1 4 4 4 0 Spc7 kinetochore protein Img2 PF05046.14 gi|154151120|ref|YP_001404738.1| - 5 7.5 6.1 7.3 7.0 0.7 3.5 3 1 0 3 3 2 0 Mitochondrial large subunit ribosomal protein (Img2) AIP3 PF03915.13 gi|154151120|ref|YP_001404738.1| - 6.7 5.7 29.7 0.42 9.6 11.1 2.5 1 1 1 2 2 2 0 Actin interacting protein 3 DUF812 PF05667.11 gi|154151120|ref|YP_001404738.1| - 8.1 5.2 39.9 0.28 10.0 13.3 3.3 1 1 1 3 3 3 0 Protein of unknown function (DUF812) Sec34 PF04136.15 gi|154151120|ref|YP_001404738.1| - 8.5 6.2 18.7 2.4 8.0 0.8 4.8 2 2 4 6 6 6 0 Sec34-like family BLOC1_2 PF10046.9 gi|154151120|ref|YP_001404738.1| - 8.6 6.7 38.2 0.39 11.0 1.9 6.1 4 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NBP1 PF08537.10 gi|154151120|ref|YP_001404738.1| - 9.8 5.5 16.1 6.4 6.1 4.9 2.4 1 1 1 2 2 2 0 Fungal Nap binding protein NBP1 CheW PF01584.19 gi|154151121|ref|YP_001404739.1| - 4.6e-30 104.0 1.1 5.2e-30 103.9 1.1 1.0 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.21 gi|154151122|ref|YP_001404740.1| - 6e-41 140.1 23.4 6e-41 140.1 23.4 4.6 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|154151122|ref|YP_001404740.1| - 2.9e-34 117.6 0.0 8.4e-08 32.4 0.0 5.1 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|154151122|ref|YP_001404740.1| - 1.4e-28 99.1 0.0 4.2e-06 26.9 0.0 5.4 6 1 0 6 6 5 4 PAS domain PAS PF00989.25 gi|154151122|ref|YP_001404740.1| - 1.1e-24 86.7 0.0 6.7e-06 26.1 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.7 gi|154151122|ref|YP_001404740.1| - 1e-17 63.7 0.0 0.0054 16.7 0.0 5.8 5 1 1 6 6 6 4 PAS domain MLTR_LBD PF17765.1 gi|154151122|ref|YP_001404740.1| - 3.8e-10 40.2 0.0 0.1 12.7 0.0 5.3 5 0 0 5 5 5 3 MmyB-like transcription regulator ligand binding domain PAS_7 PF12860.7 gi|154151122|ref|YP_001404740.1| - 0.0026 17.9 0.0 6.6 6.9 0.0 5.8 5 2 0 5 5 5 1 PAS fold PAS_12 PF18095.1 gi|154151122|ref|YP_001404740.1| - 0.0033 17.1 0.0 1.8 8.2 0.0 3.1 2 0 0 2 2 2 1 UPF0242 C-terminal PAS-like domain HAMP PF00672.25 gi|154151122|ref|YP_001404740.1| - 0.0075 16.6 1.3 1.1 9.6 0.0 4.0 4 0 0 4 4 2 1 HAMP domain DUF948 PF06103.11 gi|154151122|ref|YP_001404740.1| - 0.01 16.1 3.5 0.01 16.1 3.5 5.6 5 1 1 6 6 5 0 Bacterial protein of unknown function (DUF948) YopE_N PF09020.10 gi|154151122|ref|YP_001404740.1| - 0.019 15.2 1.3 0.057 13.7 1.3 1.8 1 0 0 1 1 1 0 YopE, N terminal Cortex-I_coil PF09304.10 gi|154151122|ref|YP_001404740.1| - 0.033 14.4 0.6 0.033 14.4 0.6 4.0 4 1 0 4 4 4 0 Cortexillin I, coiled coil PAS_10 PF13596.6 gi|154151122|ref|YP_001404740.1| - 0.049 14.2 0.2 29 5.3 0.0 4.0 3 0 0 3 3 3 0 PAS domain PAS_3 PF08447.12 gi|154151122|ref|YP_001404740.1| - 0.12 12.6 0.0 15 5.9 0.0 3.7 4 0 0 4 4 4 0 PAS fold DUF1664 PF07889.12 gi|154151122|ref|YP_001404740.1| - 0.89 9.6 25.5 4 7.5 2.9 5.1 3 1 1 4 4 4 0 Protein of unknown function (DUF1664) LOH1CR12 PF10158.9 gi|154151122|ref|YP_001404740.1| - 1.9 8.5 12.4 9.7 6.2 0.3 4.5 2 2 2 4 4 4 0 Tumour suppressor protein CheR PF01739.18 gi|154151123|ref|YP_001404741.1| - 1.1e-57 194.7 0.0 1.5e-57 194.3 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|154151123|ref|YP_001404741.1| - 8.1e-14 51.1 3.2 1.4e-13 50.3 3.2 1.4 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|154151123|ref|YP_001404741.1| - 0.0034 18.1 0.0 0.02 15.6 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154151123|ref|YP_001404741.1| - 0.0044 17.7 0.0 0.89 10.3 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain Sel_put PF04328.13 gi|154151123|ref|YP_001404741.1| - 0.032 14.2 0.0 0.084 12.9 0.0 1.7 1 0 0 1 1 1 0 Selenoprotein, putative TMEM220 PF15071.6 gi|154151124|ref|YP_001404742.1| - 0.00018 22.2 0.3 0.00022 22.0 0.3 1.1 1 0 0 1 1 1 1 Transmembrane family 220, helix Wzy_C PF04932.15 gi|154151124|ref|YP_001404742.1| - 0.0027 17.3 0.9 0.0035 17.0 0.9 1.1 1 0 0 1 1 1 1 O-Antigen ligase Sarcoglycan_1 PF04790.13 gi|154151124|ref|YP_001404742.1| - 0.0033 16.8 1.0 0.0039 16.6 1.0 1.0 1 0 0 1 1 1 1 Sarcoglycan complex subunit protein YfhO PF09586.10 gi|154151124|ref|YP_001404742.1| - 0.0042 15.4 0.1 0.0047 15.2 0.1 1.0 1 0 0 1 1 1 1 Bacterial membrane protein YfhO DUF5313 PF17240.2 gi|154151124|ref|YP_001404742.1| - 0.01 16.3 0.2 0.012 16.0 0.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5313) FA_desaturase PF00487.24 gi|154151124|ref|YP_001404742.1| - 0.014 15.3 0.2 0.014 15.2 0.2 1.0 1 0 0 1 1 1 0 Fatty acid desaturase Phage_holin_3_6 PF07332.11 gi|154151124|ref|YP_001404742.1| - 0.02 14.9 1.1 0.027 14.5 1.1 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4131 PF13567.6 gi|154151124|ref|YP_001404742.1| - 0.021 14.5 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Zn_peptidase_2 PF04298.12 gi|154151124|ref|YP_001404742.1| - 0.03 13.7 0.3 0.037 13.4 0.3 1.1 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase YajC PF02699.15 gi|154151124|ref|YP_001404742.1| - 0.042 13.7 0.2 0.042 13.7 0.2 1.8 2 0 0 2 2 2 0 Preprotein translocase subunit DUF4133 PF13571.6 gi|154151124|ref|YP_001404742.1| - 0.046 14.1 1.2 0.059 13.7 1.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4133) DUF2207 PF09972.9 gi|154151124|ref|YP_001404742.1| - 0.047 12.4 0.6 0.053 12.3 0.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Ndc1_Nup PF09531.10 gi|154151124|ref|YP_001404742.1| - 0.32 9.6 3.3 0.38 9.4 3.3 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup HTH_36 PF13730.6 gi|154151127|ref|YP_001404745.1| - 0.088 12.8 0.0 0.41 10.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|154151127|ref|YP_001404745.1| - 0.099 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus DsrD PF08679.11 gi|154151127|ref|YP_001404745.1| - 0.13 12.5 0.7 0.22 11.8 0.7 1.4 1 1 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) tRNA_anti-codon PF01336.25 gi|154151128|ref|YP_001404746.1| - 8.6e-07 28.9 0.1 2.5e-06 27.4 0.1 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|154151128|ref|YP_001404746.1| - 1.2e-05 25.6 0.9 2.4e-05 24.6 0.2 2.0 2 0 0 2 2 2 1 S1 RNA binding domain DHH PF01368.20 gi|154151128|ref|YP_001404746.1| - 1.4e-05 25.3 0.1 2.7e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 DHH family RMI2 PF16100.5 gi|154151128|ref|YP_001404746.1| - 0.0028 17.5 0.4 0.0068 16.2 0.3 1.6 1 1 0 1 1 1 1 RecQ-mediated genome instability protein 2 tRNA_anti_2 PF13742.6 gi|154151128|ref|YP_001404746.1| - 0.0057 16.8 0.1 0.018 15.2 0.1 1.9 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Pribosyltran PF00156.27 gi|154151132|ref|YP_001404750.1| - 7.9e-21 74.2 0.0 2.2e-20 72.8 0.0 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|154151132|ref|YP_001404750.1| - 0.028 13.9 0.1 0.037 13.5 0.1 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Lactamase_B_2 PF12706.7 gi|154151133|ref|YP_001404751.1| - 5.6e-27 94.6 0.1 3.6e-13 49.5 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|154151133|ref|YP_001404751.1| - 2.8e-15 56.9 0.1 1.6e-13 51.2 0.0 2.6 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily AP_endonuc_2 PF01261.24 gi|154151134|ref|YP_001404752.1| - 2.3e-19 69.7 0.1 3e-19 69.3 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AAA_17 PF13207.6 gi|154151135|ref|YP_001404753.1| - 9e-14 52.1 0.1 1.3e-13 51.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|154151135|ref|YP_001404753.1| - 8.2e-10 39.3 0.0 1.1e-09 38.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|154151135|ref|YP_001404753.1| - 0.00085 19.5 0.0 0.0014 18.8 0.0 1.3 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|154151135|ref|YP_001404753.1| - 0.021 14.9 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Adenylate kinase Radical_SAM PF04055.21 gi|154151136|ref|YP_001404754.1| - 4.6e-17 62.9 0.0 6.8e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|154151136|ref|YP_001404754.1| - 4.6e-10 39.9 0.0 1e-09 38.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|154151136|ref|YP_001404754.1| - 3.7e-07 30.3 0.0 6.6e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain ThiC_Rad_SAM PF01964.18 gi|154151137|ref|YP_001404755.1| - 2.9e-176 586.3 2.4 3.3e-176 586.2 2.4 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family AAA PF00004.29 gi|154151138|ref|YP_001404756.1| - 3.1e-92 305.9 0.0 9.4e-46 155.5 0.0 3.0 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|154151138|ref|YP_001404756.1| - 1.4e-23 82.9 1.1 6.1e-23 80.8 1.1 2.2 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|154151138|ref|YP_001404756.1| - 1.5e-22 79.1 1.0 4.7e-12 45.5 0.1 3.0 2 0 0 2 2 2 2 AAA+ lid domain AAA_2 PF07724.14 gi|154151138|ref|YP_001404756.1| - 2.9e-14 53.6 0.0 3e-07 30.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|154151138|ref|YP_001404756.1| - 4.1e-14 52.6 0.0 9.1e-08 32.0 0.0 2.9 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|154151138|ref|YP_001404756.1| - 5.5e-11 42.1 0.2 1.4e-10 40.8 0.2 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|154151138|ref|YP_001404756.1| - 6.3e-11 42.9 0.3 0.00016 22.1 0.0 3.7 2 1 1 3 3 3 2 AAA ATPase domain TIP49 PF06068.13 gi|154151138|ref|YP_001404756.1| - 8.1e-11 41.7 0.0 0.00022 20.6 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|154151138|ref|YP_001404756.1| - 1.8e-10 41.2 0.0 0.0012 19.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.6 gi|154151138|ref|YP_001404756.1| - 2.8e-10 40.6 1.1 0.058 13.7 0.1 5.2 2 2 3 5 5 5 2 AAA domain AAA_5 PF07728.14 gi|154151138|ref|YP_001404756.1| - 3.7e-09 36.7 3.4 0.015 15.3 0.1 5.0 3 2 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|154151138|ref|YP_001404756.1| - 3.9e-07 30.2 0.0 0.045 13.8 0.0 3.2 4 0 0 4 4 3 2 AAA domain RNA_helicase PF00910.22 gi|154151138|ref|YP_001404756.1| - 7e-07 29.6 0.0 0.0089 16.4 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.6 gi|154151138|ref|YP_001404756.1| - 1.5e-06 28.8 0.0 0.054 14.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|154151138|ref|YP_001404756.1| - 1.9e-06 27.4 0.2 0.073 12.4 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|154151138|ref|YP_001404756.1| - 3.1e-06 26.8 0.0 0.014 14.9 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|154151138|ref|YP_001404756.1| - 3.9e-06 26.7 0.1 0.13 11.9 0.0 2.8 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|154151138|ref|YP_001404756.1| - 4.7e-06 26.9 0.0 0.12 12.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|154151138|ref|YP_001404756.1| - 4.1e-05 23.4 0.0 0.35 10.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|154151138|ref|YP_001404756.1| - 4.5e-05 23.3 0.0 0.39 10.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|154151138|ref|YP_001404756.1| - 4.7e-05 22.6 0.1 0.038 13.1 0.0 2.6 3 0 0 3 3 2 1 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|154151138|ref|YP_001404756.1| - 6.4e-05 23.0 0.1 0.24 11.4 0.0 2.9 3 0 0 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|154151138|ref|YP_001404756.1| - 7.5e-05 22.2 0.7 2.3 7.5 0.0 4.1 4 0 0 4 4 4 2 KaiC NB-ARC PF00931.22 gi|154151138|ref|YP_001404756.1| - 0.00013 21.3 0.0 0.69 9.0 0.0 2.8 3 0 0 3 3 3 2 NB-ARC domain ABC_tran PF00005.27 gi|154151138|ref|YP_001404756.1| - 0.00016 22.2 0.0 2.8 8.5 0.0 3.8 3 0 0 3 3 3 1 ABC transporter Sigma54_activat PF00158.26 gi|154151138|ref|YP_001404756.1| - 0.00021 21.0 0.0 0.71 9.6 0.0 3.1 2 2 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.16 gi|154151138|ref|YP_001404756.1| - 0.00023 20.7 0.1 0.85 9.0 0.0 3.0 3 0 0 3 3 3 2 PhoH-like protein Bac_DnaA PF00308.18 gi|154151138|ref|YP_001404756.1| - 0.00035 20.5 0.0 0.033 14.0 0.0 2.7 2 1 0 2 2 2 1 Bacterial dnaA protein AAA_17 PF13207.6 gi|154151138|ref|YP_001404756.1| - 0.0004 20.8 0.0 1.4 9.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|154151138|ref|YP_001404756.1| - 0.00095 19.0 0.2 2.2 8.0 0.0 3.1 3 0 0 3 3 3 1 AAA domain Vps4_C PF09336.10 gi|154151138|ref|YP_001404756.1| - 0.0015 18.5 0.1 0.22 11.6 0.0 2.7 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain ATPase_2 PF01637.18 gi|154151138|ref|YP_001404756.1| - 0.0022 18.0 0.2 3.6 7.4 0.0 3.3 3 2 1 4 4 3 1 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|154151138|ref|YP_001404756.1| - 0.0024 17.1 0.0 1.7 7.8 0.0 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_30 PF13604.6 gi|154151138|ref|YP_001404756.1| - 0.003 17.3 0.1 2.4 7.8 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|154151138|ref|YP_001404756.1| - 0.0037 16.9 4.0 2.6 7.6 0.1 3.7 2 1 1 3 3 3 1 AAA domain DUF2075 PF09848.9 gi|154151138|ref|YP_001404756.1| - 0.0038 16.5 0.0 0.62 9.3 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|154151138|ref|YP_001404756.1| - 0.0064 15.8 0.1 3.8 6.7 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin NACHT PF05729.12 gi|154151138|ref|YP_001404756.1| - 0.0077 16.2 1.8 0.99 9.3 0.1 3.2 4 0 0 4 4 3 1 NACHT domain AAA_19 PF13245.6 gi|154151138|ref|YP_001404756.1| - 0.015 15.7 5.2 3.1 8.1 0.2 3.8 3 2 1 4 4 3 0 AAA domain AFG1_ATPase PF03969.16 gi|154151138|ref|YP_001404756.1| - 0.021 13.8 0.0 2.1 7.2 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase ResIII PF04851.15 gi|154151138|ref|YP_001404756.1| - 0.03 14.3 0.0 7 6.6 0.0 3.0 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Cytidylate_kin PF02224.18 gi|154151138|ref|YP_001404756.1| - 0.036 13.8 0.1 12 5.5 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|154151138|ref|YP_001404756.1| - 0.11 12.2 0.0 1.5 8.5 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase TniB PF05621.11 gi|154151138|ref|YP_001404756.1| - 0.12 11.7 0.0 20 4.5 0.0 2.8 2 0 0 2 2 2 0 Bacterial TniB protein Zot PF05707.12 gi|154151138|ref|YP_001404756.1| - 0.13 11.8 0.1 21 4.7 0.0 3.0 2 2 0 3 3 3 0 Zonular occludens toxin (Zot) Sigma54_activ_2 PF14532.6 gi|154151138|ref|YP_001404756.1| - 0.19 11.9 0.0 31 4.7 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|154151138|ref|YP_001404756.1| - 2.5 8.0 6.6 32 4.4 0.1 4.0 4 2 0 5 5 4 0 NTPase PMT_2 PF13231.6 gi|154151139|ref|YP_001404757.1| - 1.1e-33 116.6 17.5 1.1e-33 116.6 17.5 3.5 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|154151139|ref|YP_001404757.1| - 1.1e-09 38.3 15.6 1.1e-09 38.3 15.6 2.1 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.14 gi|154151139|ref|YP_001404757.1| - 0.0037 16.3 14.3 0.0037 16.3 14.3 2.3 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit DUF2723 PF11028.8 gi|154151139|ref|YP_001404757.1| - 0.044 13.7 8.8 0.14 12.1 8.8 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2723) GtrA PF04138.14 gi|154151140|ref|YP_001404758.1| - 2e-25 89.3 14.7 2.3e-25 89.1 14.7 1.0 1 0 0 1 1 1 1 GtrA-like protein DUF308 PF03729.13 gi|154151141|ref|YP_001404759.1| - 0.032 14.5 13.3 0.19 12.1 12.1 1.9 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) Oxidored_q2 PF00420.24 gi|154151141|ref|YP_001404759.1| - 0.07 12.8 5.5 0.075 12.7 5.5 1.0 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DuoxA PF10204.9 gi|154151141|ref|YP_001404759.1| - 0.22 10.5 4.7 0.24 10.4 4.7 1.0 1 0 0 1 1 1 0 Dual oxidase maturation factor Phage_holin_3_6 PF07332.11 gi|154151141|ref|YP_001404759.1| - 0.89 9.6 8.5 1.1 9.3 8.5 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Claudin_2 PF13903.6 gi|154151141|ref|YP_001404759.1| - 1.3 8.7 6.0 1.4 8.6 6.0 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Halogen_Hydrol PF10112.9 gi|154151141|ref|YP_001404759.1| - 1.8 8.6 4.1 2 8.4 4.1 1.0 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF3040 PF11239.8 gi|154151141|ref|YP_001404759.1| - 3.5 8.0 12.3 5.3 7.4 12.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) DUF2207 PF09972.9 gi|154151141|ref|YP_001404759.1| - 8.6 5.0 8.6 9.3 4.9 8.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) NHL PF01436.21 gi|154151143|ref|YP_001404761.1| - 6.3e-46 152.2 15.8 5.3e-08 32.5 0.0 6.7 6 0 0 6 6 6 6 NHL repeat DUF5128 PF17170.4 gi|154151143|ref|YP_001404761.1| - 6.5e-22 78.1 2.0 1.1e-08 34.7 0.2 3.4 2 1 1 3 3 3 3 6-bladed beta-propeller SGL PF08450.12 gi|154151143|ref|YP_001404761.1| - 3.7e-16 59.5 7.8 5.6e-05 22.8 0.2 5.9 2 2 4 6 6 6 6 SMP-30/Gluconolactonase/LRE-like region PKD PF00801.20 gi|154151143|ref|YP_001404761.1| - 5.8e-08 32.5 6.8 2.5e-07 30.5 6.8 2.1 1 0 0 1 1 1 1 PKD domain Phytase-like PF13449.6 gi|154151143|ref|YP_001404761.1| - 1.6e-06 28.3 0.5 3.5 7.5 0.0 5.1 3 2 0 4 4 4 2 Esterase-like activity of phytase Arylesterase PF01731.20 gi|154151143|ref|YP_001404761.1| - 6.3e-05 23.1 5.6 1.7 8.9 0.1 5.1 3 2 2 5 5 5 2 Arylesterase MRJP PF03022.16 gi|154151143|ref|YP_001404761.1| - 0.00023 20.6 9.7 0.71 9.2 0.2 5.7 5 2 1 7 7 7 2 Major royal jelly protein BpuJI_N PF11564.8 gi|154151143|ref|YP_001404761.1| - 0.022 14.0 0.4 27 3.8 0.0 4.4 5 1 1 6 6 6 0 Restriction endonuclease BpuJI - N terminal SBBP PF06739.11 gi|154151143|ref|YP_001404761.1| - 0.11 12.5 0.3 0.11 12.5 0.3 6.7 7 0 0 7 7 7 0 Beta-propeller repeat DUF2251 PF10008.9 gi|154151143|ref|YP_001404761.1| - 7.7 6.7 10.9 52 4.0 0.0 4.9 5 1 1 6 6 6 0 Uncharacterized protein conserved in bacteria (DUF2251) Mrr_cat PF04471.12 gi|154151144|ref|YP_001404762.1| - 6.9e-08 32.5 0.2 1.3e-07 31.7 0.2 1.4 1 0 0 1 1 1 1 Restriction endonuclease PDDEXK_10 PF07788.11 gi|154151144|ref|YP_001404762.1| - 0.024 14.6 0.9 0.082 12.8 0.9 2.0 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily AAA_2 PF07724.14 gi|154151146|ref|YP_001404764.1| - 5.5e-60 202.4 1.3 2.8e-57 193.5 0.2 3.0 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 gi|154151146|ref|YP_001404764.1| - 1.8e-37 127.4 8.6 1.8e-37 127.4 8.6 3.3 3 0 0 3 3 2 1 AAA lid domain AAA PF00004.29 gi|154151146|ref|YP_001404764.1| - 1.4e-25 90.3 0.2 1.1e-13 51.7 0.0 3.0 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.9 gi|154151146|ref|YP_001404764.1| - 5.8e-24 84.0 0.9 2.6e-23 81.9 0.9 2.3 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.14 gi|154151146|ref|YP_001404764.1| - 1.5e-22 80.1 0.1 8.1e-15 55.0 0.0 3.1 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Clp_N PF02861.20 gi|154151146|ref|YP_001404764.1| - 1.9e-15 56.7 0.2 5.1e-08 32.9 0.1 3.0 2 0 0 2 2 2 2 Clp amino terminal domain, pathogenicity island component AAA_16 PF13191.6 gi|154151146|ref|YP_001404764.1| - 2.3e-12 47.6 5.2 1.6e-06 28.6 0.0 4.4 3 2 0 3 3 2 2 AAA ATPase domain Sigma54_activat PF00158.26 gi|154151146|ref|YP_001404764.1| - 3.5e-12 46.4 0.2 5e-08 32.8 0.0 2.9 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 gi|154151146|ref|YP_001404764.1| - 3.7e-08 33.8 4.4 0.0074 16.6 0.1 5.1 2 2 1 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|154151146|ref|YP_001404764.1| - 4e-08 33.2 0.0 0.0016 18.2 0.0 2.9 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.6 gi|154151146|ref|YP_001404764.1| - 1.9e-07 31.2 0.1 0.025 14.6 0.0 3.4 2 1 0 3 3 3 2 AAA domain Mg_chelatase PF01078.21 gi|154151146|ref|YP_001404764.1| - 7.5e-07 28.7 0.1 0.064 12.6 0.0 3.9 2 1 1 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|154151146|ref|YP_001404764.1| - 5.2e-06 26.1 0.2 0.17 11.4 0.0 3.3 3 0 0 3 3 3 2 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|154151146|ref|YP_001404764.1| - 1.1e-05 24.8 0.2 0.0066 15.7 0.0 3.6 4 0 0 4 4 3 1 Zeta toxin RuvB_N PF05496.12 gi|154151146|ref|YP_001404764.1| - 2.5e-05 24.1 1.9 0.73 9.6 0.5 4.4 3 1 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain TniB PF05621.11 gi|154151146|ref|YP_001404764.1| - 5.5e-05 22.6 0.0 0.022 14.1 0.0 3.7 2 1 0 2 2 2 1 Bacterial TniB protein ResIII PF04851.15 gi|154151146|ref|YP_001404764.1| - 0.00015 21.8 0.0 0.52 10.3 0.0 3.9 2 1 1 3 3 3 1 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|154151146|ref|YP_001404764.1| - 0.00015 21.7 0.0 0.15 12.0 0.0 3.4 3 0 0 3 3 3 1 NACHT domain Roc PF08477.13 gi|154151146|ref|YP_001404764.1| - 0.00027 21.1 0.0 0.46 10.7 0.0 2.7 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase DNA_pol3_delta2 PF13177.6 gi|154151146|ref|YP_001404764.1| - 0.00033 20.5 0.0 0.074 12.8 0.0 3.5 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA_3 PF07726.11 gi|154151146|ref|YP_001404764.1| - 0.00037 20.3 0.7 0.073 12.9 0.0 3.4 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|154151146|ref|YP_001404764.1| - 0.00051 19.8 0.1 0.32 10.7 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_18 PF13238.6 gi|154151146|ref|YP_001404764.1| - 0.0007 20.1 9.1 0.016 15.8 0.0 4.3 7 0 0 7 7 2 1 AAA domain RNA_helicase PF00910.22 gi|154151146|ref|YP_001404764.1| - 0.001 19.4 0.1 3.3 8.1 0.0 3.1 3 0 0 3 3 3 1 RNA helicase RsgA_GTPase PF03193.16 gi|154151146|ref|YP_001404764.1| - 0.0014 18.6 2.8 0.65 9.9 0.0 3.5 3 1 1 4 4 4 1 RsgA GTPase DnaB_C PF03796.15 gi|154151146|ref|YP_001404764.1| - 0.0014 18.0 1.5 0.62 9.4 0.0 3.3 4 0 0 4 4 3 1 DnaB-like helicase C terminal domain TsaE PF02367.17 gi|154151146|ref|YP_001404764.1| - 0.0028 17.6 0.0 4 7.4 0.0 2.7 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|154151146|ref|YP_001404764.1| - 0.0034 17.6 0.2 0.96 9.7 0.0 3.7 4 0 0 4 4 3 1 AAA domain T2SSE PF00437.20 gi|154151146|ref|YP_001404764.1| - 0.004 16.3 0.1 0.035 13.2 0.2 2.4 2 1 0 2 2 2 1 Type II/IV secretion system protein Torsin PF06309.11 gi|154151146|ref|YP_001404764.1| - 0.0053 16.9 0.0 0.039 14.1 0.0 2.2 2 0 0 2 2 2 1 Torsin AAA_19 PF13245.6 gi|154151146|ref|YP_001404764.1| - 0.0053 17.1 0.4 0.33 11.3 0.0 3.6 2 2 1 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|154151146|ref|YP_001404764.1| - 0.0059 16.8 0.0 2.4 8.3 0.0 3.3 3 0 0 3 3 3 1 AAA domain ABC_tran PF00005.27 gi|154151146|ref|YP_001404764.1| - 0.018 15.6 4.7 0.72 10.4 0.0 3.9 3 1 0 3 3 2 0 ABC transporter AAA_25 PF13481.6 gi|154151146|ref|YP_001404764.1| - 0.035 13.7 0.0 3.8 7.0 0.0 3.6 3 0 0 3 3 3 0 AAA domain RGS PF00615.19 gi|154151146|ref|YP_001404764.1| - 0.037 14.3 0.1 0.18 12.1 0.1 2.2 1 0 0 1 1 1 0 Regulator of G protein signaling domain ATPase_2 PF01637.18 gi|154151146|ref|YP_001404764.1| - 0.05 13.5 21.7 0.12 12.3 0.1 5.4 2 2 3 5 5 5 0 ATPase domain predominantly from Archaea PduV-EutP PF10662.9 gi|154151146|ref|YP_001404764.1| - 0.095 12.5 0.0 2.9 7.6 0.0 2.8 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation PilJ PF13675.6 gi|154151146|ref|YP_001404764.1| - 0.14 12.2 4.1 7.9 6.5 1.3 2.8 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term ANAPC5 PF12862.7 gi|154151146|ref|YP_001404764.1| - 0.15 12.1 0.1 35 4.6 0.0 3.0 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 5 EHN PF06441.12 gi|154151146|ref|YP_001404764.1| - 0.4 11.1 1.3 3.2 8.2 1.0 2.4 2 0 0 2 2 2 0 Epoxide hydrolase N terminus GrpE PF01025.19 gi|154151147|ref|YP_001404765.1| - 5.3e-41 140.0 0.7 6e-41 139.9 0.7 1.0 1 0 0 1 1 1 1 GrpE SSTK-IP PF15836.5 gi|154151147|ref|YP_001404765.1| - 0.039 14.1 0.1 2.9 8.0 0.0 2.1 2 0 0 2 2 2 0 SSTK-interacting protein, TSSK6-activating co-chaperone protein DUF1451 PF07295.11 gi|154151147|ref|YP_001404765.1| - 0.044 13.8 3.1 0.069 13.2 3.1 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF4404 PF14357.6 gi|154151147|ref|YP_001404765.1| - 0.78 10.4 4.2 1.7 9.4 4.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4404) HSP70 PF00012.20 gi|154151148|ref|YP_001404766.1| - 2.8e-217 722.7 11.8 1.2e-214 713.9 11.8 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|154151148|ref|YP_001404766.1| - 1.3e-19 70.2 3.0 1.3e-19 70.2 3.0 2.4 2 1 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.16 gi|154151148|ref|YP_001404766.1| - 0.0011 18.7 0.1 0.0034 17.1 0.0 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain StbA PF06406.11 gi|154151148|ref|YP_001404766.1| - 0.015 14.6 0.1 0.13 11.4 0.0 2.2 1 1 1 2 2 2 0 StbA protein FtsA PF14450.6 gi|154151148|ref|YP_001404766.1| - 0.17 12.4 0.2 0.17 12.4 0.2 3.7 3 2 0 3 3 3 0 Cell division protein FtsA DUF3886 PF13025.6 gi|154151148|ref|YP_001404766.1| - 6.1 7.1 10.4 3.7 7.8 0.6 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3886) DnaJ_C PF01556.18 gi|154151149|ref|YP_001404767.1| - 7.1e-40 136.5 0.0 9.4e-40 136.1 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|154151149|ref|YP_001404767.1| - 1.4e-26 92.3 2.9 2.3e-26 91.7 2.9 1.3 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|154151149|ref|YP_001404767.1| - 5e-14 52.4 16.5 8.3e-14 51.7 16.5 1.4 1 0 0 1 1 1 1 DnaJ central domain Cytochrom_CIII PF02085.16 gi|154151149|ref|YP_001404767.1| - 0.011 16.0 2.7 0.024 15.0 2.7 1.6 1 0 0 1 1 1 0 Class III cytochrome C family Lar_restr_allev PF14354.6 gi|154151149|ref|YP_001404767.1| - 0.034 14.5 5.7 0.56 10.6 1.8 2.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar Anti-TRAP PF15777.5 gi|154151149|ref|YP_001404767.1| - 0.035 14.1 19.4 0.05 13.6 4.3 2.9 1 1 3 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein RRM_3 PF08777.11 gi|154151149|ref|YP_001404767.1| - 0.046 13.8 0.1 0.078 13.0 0.1 1.3 1 0 0 1 1 1 0 RNA binding motif Cytochrom_c3_2 PF14537.6 gi|154151149|ref|YP_001404767.1| - 0.38 11.3 6.9 1.3 9.6 6.9 1.8 1 1 0 1 1 1 0 Cytochrome c3 HypA PF01155.19 gi|154151149|ref|YP_001404767.1| - 0.39 10.7 8.6 4 7.5 1.1 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|154151149|ref|YP_001404767.1| - 0.56 9.8 4.0 9.9 5.8 0.3 2.2 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 Cytochrome_C7 PF14522.6 gi|154151149|ref|YP_001404767.1| - 1.5 8.9 10.3 0.12 12.4 3.5 2.2 1 1 1 2 2 2 0 Cytochrome c7 and related cytochrome c HSP20 PF00011.21 gi|154151150|ref|YP_001404768.1| - 2e-07 31.1 0.1 2.4e-07 30.8 0.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.16 gi|154151150|ref|YP_001404768.1| - 0.00018 22.5 0.2 0.00024 22.1 0.2 1.1 1 0 0 1 1 1 1 CS domain ArsA_HSP20 PF17886.1 gi|154151150|ref|YP_001404768.1| - 0.00069 19.1 0.0 0.001 18.6 0.0 1.5 1 1 0 1 1 1 1 HSP20-like domain found in ArsA Response_reg PF00072.24 gi|154151151|ref|YP_001404769.1| - 3.1e-24 85.3 0.1 8.1e-24 84.0 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain FBPase PF00316.20 gi|154151152|ref|YP_001404770.1| - 2.9e-36 124.7 0.0 3.8e-36 124.3 0.0 1.1 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|154151152|ref|YP_001404770.1| - 0.0053 16.3 0.0 0.009 15.5 0.0 1.3 1 0 0 1 1 1 1 Inositol monophosphatase family F_bP_aldolase PF01116.20 gi|154151153|ref|YP_001404771.1| - 5.9e-34 117.8 1.0 7.6e-34 117.5 1.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II Tagatose_6_P_K PF08013.11 gi|154151153|ref|YP_001404771.1| - 1.1e-09 37.5 0.4 1.7e-09 36.9 0.4 1.2 1 0 0 1 1 1 1 Tagatose 6 phosphate kinase FBPase_3 PF01950.16 gi|154151154|ref|YP_001404772.1| - 2.2e-172 573.2 0.0 2.5e-172 573.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase LSM PF01423.22 gi|154151155|ref|YP_001404773.1| - 4.7e-18 64.6 0.7 5.2e-18 64.5 0.7 1.1 1 0 0 1 1 1 1 LSM domain DUF150_C PF17384.2 gi|154151155|ref|YP_001404773.1| - 0.053 13.7 0.2 0.073 13.2 0.2 1.3 1 0 0 1 1 1 0 RimP C-terminal SH3 domain B-block_TFIIIC PF04182.12 gi|154151156|ref|YP_001404774.1| - 1.5e-08 34.7 0.0 2e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|154151156|ref|YP_001404774.1| - 1.7e-06 27.8 0.0 2.8e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|154151156|ref|YP_001404774.1| - 2.4e-05 24.2 0.0 3.6e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|154151156|ref|YP_001404774.1| - 5.3e-05 22.7 0.0 8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|154151156|ref|YP_001404774.1| - 0.00078 19.3 0.0 0.00095 19.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|154151156|ref|YP_001404774.1| - 0.0041 17.2 0.0 0.0055 16.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_micro PF17007.5 gi|154151156|ref|YP_001404774.1| - 0.0052 15.7 0.0 0.0061 15.4 0.0 1.0 1 0 0 1 1 1 1 HTH-like DUF2250 PF10007.9 gi|154151156|ref|YP_001404774.1| - 0.016 15.3 0.1 0.022 14.8 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|154151156|ref|YP_001404774.1| - 0.05 14.1 0.0 0.066 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|154151156|ref|YP_001404774.1| - 0.087 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|154151156|ref|YP_001404774.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain DUF3784 PF12650.7 gi|154151157|ref|YP_001404775.1| - 0.009 16.2 4.1 0.041 14.1 0.0 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF3784) Claudin_2 PF13903.6 gi|154151157|ref|YP_001404775.1| - 0.14 11.9 3.4 0.13 12.0 1.5 1.9 2 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DisA_N PF02457.16 gi|154151158|ref|YP_001404776.1| - 1.4e-19 69.8 0.1 3.3e-19 68.6 0.1 1.7 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding PAS PF00989.25 gi|154151158|ref|YP_001404776.1| - 9.3e-17 61.1 0.0 3.5e-11 43.1 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|154151158|ref|YP_001404776.1| - 1.6e-15 57.2 0.0 7.9e-07 29.3 0.1 3.0 2 1 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|154151158|ref|YP_001404776.1| - 2.9e-10 40.4 0.0 6e-06 26.5 0.0 2.8 2 1 0 2 2 2 2 PAS fold Response_reg PF00072.24 gi|154151158|ref|YP_001404776.1| - 6.6e-09 35.9 0.0 1.2e-07 31.8 0.0 2.5 1 1 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|154151158|ref|YP_001404776.1| - 8.8e-06 25.6 0.0 0.0097 15.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|154151158|ref|YP_001404776.1| - 0.0033 17.7 0.1 0.039 14.2 0.1 2.9 2 1 1 3 3 3 1 PAS fold DUF2769 PF10967.8 gi|154151159|ref|YP_001404777.1| - 3.9e-18 65.9 14.6 6.7e-18 65.1 14.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) DUF3558 PF12079.8 gi|154151161|ref|YP_001404779.1| - 4 7.4 9.6 6 6.8 9.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) ATP-grasp_5 PF13549.6 gi|154151162|ref|YP_001404780.1| - 1.1e-65 221.3 0.0 1.5e-65 220.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|154151162|ref|YP_001404780.1| - 1.5e-52 177.1 0.2 7.8e-52 174.7 0.1 2.3 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|154151162|ref|YP_001404780.1| - 1.5e-26 93.2 0.1 3.8e-26 91.9 0.1 1.8 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|154151162|ref|YP_001404780.1| - 1.1e-10 42.0 0.2 3.9e-10 40.3 0.2 2.0 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|154151162|ref|YP_001404780.1| - 0.00018 21.1 0.4 0.00038 20.1 0.4 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|154151162|ref|YP_001404780.1| - 0.004 16.8 0.0 0.007 15.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|154151162|ref|YP_001404780.1| - 0.016 15.0 0.3 0.036 13.8 0.3 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PAS_3 PF08447.12 gi|154151164|ref|YP_001404782.1| - 1.3e-26 92.7 1.0 1.6e-12 47.6 0.1 4.2 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|154151164|ref|YP_001404782.1| - 2.4e-23 82.3 0.0 8.2e-12 45.3 0.0 3.9 3 1 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|154151164|ref|YP_001404782.1| - 2.2e-22 79.4 0.4 9.7e-09 35.5 0.0 4.2 4 0 0 4 4 4 4 PAS fold PAS PF00989.25 gi|154151164|ref|YP_001404782.1| - 7.6e-21 74.2 0.1 1.8e-09 37.6 0.0 4.0 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|154151164|ref|YP_001404782.1| - 5.6e-10 39.0 0.0 0.0038 17.2 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS_10 PF13596.6 gi|154151164|ref|YP_001404782.1| - 0.00023 21.7 0.0 0.0092 16.6 0.0 3.2 3 0 0 3 3 3 1 PAS domain Rho_RNA_bind PF07497.12 gi|154151164|ref|YP_001404782.1| - 0.014 15.3 0.0 0.043 13.7 0.0 1.8 2 0 0 2 2 2 0 Rho termination factor, RNA-binding domain 7TMR-DISM_7TM PF07695.11 gi|154151164|ref|YP_001404782.1| - 0.076 12.9 1.4 0.12 12.3 1.4 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling PAS_7 PF12860.7 gi|154151164|ref|YP_001404782.1| - 0.45 10.7 2.4 18 5.5 0.0 4.1 3 1 2 5 5 5 0 PAS fold HTH_DeoR PF08220.12 gi|154151165|ref|YP_001404783.1| - 0.00061 19.5 0.0 0.00094 18.9 0.0 1.2 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_24 PF13412.6 gi|154151165|ref|YP_001404783.1| - 0.00066 19.2 0.0 0.00096 18.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|154151165|ref|YP_001404783.1| - 0.012 15.5 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_12 PF08461.10 gi|154151165|ref|YP_001404783.1| - 0.032 14.2 0.3 0.054 13.4 0.3 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|154151165|ref|YP_001404783.1| - 0.1 12.5 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|154151165|ref|YP_001404783.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GCS2 PF04107.13 gi|154151166|ref|YP_001404784.1| - 3e-35 122.0 0.0 4e-35 121.6 0.0 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) GCS PF03074.16 gi|154151166|ref|YP_001404784.1| - 0.054 12.9 0.0 0.14 11.5 0.0 1.6 2 0 0 2 2 2 0 Glutamate-cysteine ligase CxxCxxCC PF03692.15 gi|154151167|ref|YP_001404785.1| - 1.9e-09 38.1 3.8 3e-09 37.4 3.8 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain IF3_N PF05198.16 gi|154151167|ref|YP_001404785.1| - 0.02 15.1 0.1 0.038 14.3 0.1 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain RimK PF08443.11 gi|154151168|ref|YP_001404786.1| - 1.4e-07 31.3 0.0 5.9e-07 29.3 0.0 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|154151168|ref|YP_001404786.1| - 2.8e-06 27.5 0.0 5.2e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain R2K_3 PF14243.6 gi|154151168|ref|YP_001404786.1| - 0.00082 19.4 0.0 0.0016 18.5 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 R2K_2 PF18299.1 gi|154151168|ref|YP_001404786.1| - 0.00093 19.1 0.1 0.0034 17.2 0.1 2.0 1 1 0 1 1 1 1 ATP-grasp domain, R2K clade family 2 Dala_Dala_lig_C PF07478.13 gi|154151168|ref|YP_001404786.1| - 0.0086 15.6 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus TTL PF03133.15 gi|154151168|ref|YP_001404786.1| - 0.093 11.8 0.0 0.57 9.2 0.0 1.9 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family RLAN PF14401.6 gi|154151169|ref|YP_001404787.1| - 7e-09 35.5 0.0 1.3e-08 34.7 0.0 1.4 1 1 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain CxxCxxCC PF03692.15 gi|154151170|ref|YP_001404788.1| - 2.8e-07 31.1 1.2 4.2e-07 30.5 1.2 1.4 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF475 PF04332.15 gi|154151171|ref|YP_001404789.1| - 5.2e-47 161.1 12.6 6.5e-47 160.7 12.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.16 gi|154151171|ref|YP_001404789.1| - 9.6e-18 64.5 14.5 6.3e-10 39.0 5.9 2.4 1 1 1 2 2 2 2 Integral membrane protein TerC family Fer4 PF00037.27 gi|154151172|ref|YP_001404790.1| - 1.3e-07 31.1 17.9 2.1e-07 30.4 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|154151172|ref|YP_001404790.1| - 3.5e-06 27.0 13.6 0.00011 22.2 14.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154151172|ref|YP_001404790.1| - 3.2e-05 23.8 2.3 3.2e-05 23.8 2.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|154151172|ref|YP_001404790.1| - 3.5e-05 23.9 7.4 0.00086 19.4 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154151172|ref|YP_001404790.1| - 6.1e-05 22.9 2.7 6.1e-05 22.9 2.7 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|154151172|ref|YP_001404790.1| - 7.6e-05 23.2 13.9 0.00019 21.9 13.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154151172|ref|YP_001404790.1| - 0.00019 21.9 8.7 0.046 14.3 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154151172|ref|YP_001404790.1| - 0.00052 20.3 14.5 0.00089 19.6 2.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154151172|ref|YP_001404790.1| - 0.0013 19.7 15.4 0.018 16.0 15.5 2.2 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|154151172|ref|YP_001404790.1| - 0.0022 18.4 15.0 0.0083 16.5 14.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154151172|ref|YP_001404790.1| - 0.0027 17.8 14.0 0.0083 16.2 14.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|154151172|ref|YP_001404790.1| - 0.01 16.7 4.4 0.042 14.7 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|154151172|ref|YP_001404790.1| - 0.015 16.2 20.5 0.047 14.6 5.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|154151172|ref|YP_001404790.1| - 1.4 9.5 7.8 0.45 11.1 1.6 2.6 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|154151172|ref|YP_001404790.1| - 6.2 7.1 13.6 9.8 6.4 3.8 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain UPF0047 PF01894.17 gi|154151173|ref|YP_001404791.1| - 4.8e-34 117.0 0.0 5.5e-34 116.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DNA_topoisoIV PF00521.20 gi|154151175|ref|YP_001404793.1| - 7.8e-153 509.4 0.0 1e-152 509.0 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|154151175|ref|YP_001404793.1| - 3.3e-73 241.0 17.3 2.8e-15 55.5 2.1 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DNA_gyraseB PF00204.25 gi|154151176|ref|YP_001404794.1| - 8.9e-59 197.9 0.2 1.6e-58 197.0 0.2 1.4 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|154151176|ref|YP_001404794.1| - 2.8e-29 101.1 0.2 6.2e-29 100.0 0.2 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.22 gi|154151176|ref|YP_001404794.1| - 8.3e-19 67.7 0.0 2.5e-18 66.2 0.0 1.9 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.26 gi|154151176|ref|YP_001404794.1| - 1.2e-17 64.5 0.1 3.2e-17 63.0 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|154151176|ref|YP_001404794.1| - 0.0016 18.3 0.1 0.0035 17.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3349 PF11829.8 gi|154151176|ref|YP_001404794.1| - 0.0057 17.4 0.0 0.5 11.2 0.0 2.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3349) PAS PF00989.25 gi|154151177|ref|YP_001404795.1| - 7.7e-06 25.9 0.1 2e-05 24.5 0.1 1.7 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|154151177|ref|YP_001404795.1| - 0.00051 20.0 0.0 0.0011 18.9 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|154151177|ref|YP_001404795.1| - 0.0018 18.5 0.1 0.004 17.4 0.1 1.6 1 0 0 1 1 1 1 PAS domain Fe-ADH PF00465.19 gi|154151178|ref|YP_001404796.1| - 8.4e-116 386.7 0.1 9.5e-116 386.6 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|154151178|ref|YP_001404796.1| - 1.8e-20 73.7 0.2 2.1e-11 44.0 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Peptidase_A6 PF01829.16 gi|154151178|ref|YP_001404796.1| - 0.072 12.4 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Peptidase A6 family CbiM PF01891.16 gi|154151179|ref|YP_001404797.1| - 1.4e-55 188.3 15.9 1.6e-55 188.2 15.9 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3278 PF11683.8 gi|154151179|ref|YP_001404797.1| - 0.54 10.4 0.0 0.54 10.4 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3278) PDGLE PF13190.6 gi|154151180|ref|YP_001404798.1| - 3.4e-06 26.8 0.2 5.2e-06 26.3 0.2 1.2 1 0 0 1 1 1 1 PDGLE domain Sigma_reg_N PF13800.6 gi|154151180|ref|YP_001404798.1| - 0.11 12.8 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Sigma factor regulator N-terminal ABC_tran PF00005.27 gi|154151181|ref|YP_001404799.1| - 7.7e-32 110.7 0.0 1.2e-31 110.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154151181|ref|YP_001404799.1| - 2.7e-16 60.3 1.5 2.3e-09 37.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|154151181|ref|YP_001404799.1| - 4.9e-08 32.7 0.0 7.1e-07 28.9 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|154151181|ref|YP_001404799.1| - 5.1e-08 33.0 0.0 0.001 18.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|154151181|ref|YP_001404799.1| - 2.1e-06 28.4 0.0 2.9e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|154151181|ref|YP_001404799.1| - 3.9e-06 26.5 0.1 8.4e-06 25.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|154151181|ref|YP_001404799.1| - 0.002 18.4 0.0 0.0035 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|154151181|ref|YP_001404799.1| - 0.008 15.6 0.0 0.021 14.2 0.0 1.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_27 PF13514.6 gi|154151181|ref|YP_001404799.1| - 0.012 15.2 0.1 0.026 14.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|154151181|ref|YP_001404799.1| - 0.059 13.8 0.0 0.081 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|154151181|ref|YP_001404799.1| - 0.1 11.2 0.0 0.4 9.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|154151181|ref|YP_001404799.1| - 0.16 11.8 0.0 0.96 9.3 0.0 2.0 2 0 0 2 2 2 0 NACHT domain CbiQ PF02361.16 gi|154151182|ref|YP_001404800.1| - 9.4e-32 110.4 11.9 9.4e-32 110.4 11.9 1.5 1 1 1 2 2 2 1 Cobalt transport protein TOBE PF03459.17 gi|154151183|ref|YP_001404801.1| - 3.9e-21 75.1 0.2 4.3e-21 75.0 0.2 1.0 1 0 0 1 1 1 1 TOBE domain NikR_C PF08753.11 gi|154151185|ref|YP_001404803.1| - 1.9e-31 108.0 4.7 2.8e-31 107.5 4.7 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|154151185|ref|YP_001404803.1| - 8.8e-11 41.3 0.3 2.6e-10 39.9 0.0 1.9 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|154151185|ref|YP_001404803.1| - 0.0016 18.6 0.1 0.0031 17.6 0.0 1.6 2 0 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system RMMBL PF07521.12 gi|154151185|ref|YP_001404803.1| - 0.0027 17.6 0.1 0.01 15.7 0.1 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Methyltransf_21 PF05050.12 gi|154151186|ref|YP_001404804.1| - 3.2e-05 24.0 0.1 0.0007 19.6 0.1 2.2 1 1 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|154151186|ref|YP_001404804.1| - 0.00043 20.1 0.0 0.00064 19.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.11 gi|154151186|ref|YP_001404804.1| - 0.015 14.6 0.0 0.023 14.0 0.0 1.4 1 0 0 1 1 1 0 Vibrio cholerae RfbT protein NAD_binding_2 PF03446.15 gi|154151187|ref|YP_001404805.1| - 9.1e-32 110.4 0.0 1.3e-31 109.9 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|154151187|ref|YP_001404805.1| - 4.3e-25 88.3 0.1 6.4e-25 87.8 0.1 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|154151187|ref|YP_001404805.1| - 2.4e-07 30.3 0.0 4.1e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|154151187|ref|YP_001404805.1| - 3.3e-05 24.4 0.0 7.5e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|154151187|ref|YP_001404805.1| - 0.00018 21.6 0.0 0.00045 20.3 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|154151187|ref|YP_001404805.1| - 0.004 17.0 0.0 0.0069 16.3 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|154151187|ref|YP_001404805.1| - 0.0062 16.5 0.0 0.065 13.2 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.12 gi|154151187|ref|YP_001404805.1| - 0.013 15.1 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_10 PF13460.6 gi|154151187|ref|YP_001404805.1| - 0.051 13.4 0.0 0.091 12.7 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding MacB_PCD PF12704.7 gi|154151188|ref|YP_001404806.1| - 1.2e-17 65.0 8.9 1.2e-17 65.0 8.9 2.9 2 1 1 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|154151188|ref|YP_001404806.1| - 9.9e-13 48.4 14.3 3.7e-12 46.6 5.3 3.3 3 0 0 3 3 3 2 FtsX-like permease family DUF4064 PF13273.6 gi|154151188|ref|YP_001404806.1| - 0.0018 18.5 18.6 0.078 13.3 0.9 3.4 3 0 0 3 3 3 2 Protein of unknown function (DUF4064) DUF4134 PF13572.6 gi|154151188|ref|YP_001404806.1| - 1.2 9.5 12.1 0.19 12.0 1.5 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4134) ABC_tran PF00005.27 gi|154151189|ref|YP_001404807.1| - 4.7e-31 108.1 0.0 6.2e-31 107.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|154151189|ref|YP_001404807.1| - 6.1e-08 32.4 0.0 0.0061 16.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|154151189|ref|YP_001404807.1| - 1.8e-05 24.4 0.0 3.3e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|154151189|ref|YP_001404807.1| - 0.00014 21.8 0.1 0.019 14.8 0.0 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|154151189|ref|YP_001404807.1| - 0.00019 21.3 0.0 0.0004 20.3 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|154151189|ref|YP_001404807.1| - 0.0043 17.3 0.1 0.02 15.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|154151189|ref|YP_001404807.1| - 0.0085 15.8 0.1 0.066 12.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|154151189|ref|YP_001404807.1| - 0.0092 15.7 0.0 0.89 9.2 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|154151189|ref|YP_001404807.1| - 0.012 15.4 0.0 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|154151189|ref|YP_001404807.1| - 0.012 16.0 0.0 0.018 15.5 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|154151189|ref|YP_001404807.1| - 0.013 16.0 0.0 0.035 14.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|154151189|ref|YP_001404807.1| - 0.015 15.0 0.1 0.06 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|154151189|ref|YP_001404807.1| - 0.015 15.3 0.1 0.066 13.3 0.0 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|154151189|ref|YP_001404807.1| - 0.018 14.6 0.1 0.075 12.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|154151189|ref|YP_001404807.1| - 0.034 14.0 0.0 0.3 11.0 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|154151189|ref|YP_001404807.1| - 0.037 14.0 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|154151189|ref|YP_001404807.1| - 0.039 14.2 0.0 0.17 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|154151189|ref|YP_001404807.1| - 0.041 13.0 0.0 0.041 13.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit NB-ARC PF00931.22 gi|154151189|ref|YP_001404807.1| - 0.044 13.0 0.1 0.14 11.4 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain FtsK_SpoIIIE PF01580.18 gi|154151189|ref|YP_001404807.1| - 0.048 13.0 0.0 0.092 12.1 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family RNA_helicase PF00910.22 gi|154151189|ref|YP_001404807.1| - 0.059 13.8 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|154151189|ref|YP_001404807.1| - 0.06 13.9 0.0 0.19 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|154151189|ref|YP_001404807.1| - 0.084 11.6 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein ATPase PF06745.13 gi|154151189|ref|YP_001404807.1| - 0.085 12.2 0.1 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 KaiC AAA_14 PF13173.6 gi|154151189|ref|YP_001404807.1| - 0.085 12.9 0.0 0.18 11.9 0.0 1.6 2 0 0 2 2 1 0 AAA domain DUF11 PF01345.18 gi|154151190|ref|YP_001404808.1| - 0.0002 21.6 0.3 0.0002 21.6 0.3 5.3 2 2 2 4 4 4 1 Domain of unknown function DUF11 CARDB PF07705.11 gi|154151190|ref|YP_001404808.1| - 0.0017 18.6 0.4 0.0017 18.6 0.4 4.2 1 1 2 4 4 4 2 CARDB ASH PF15780.5 gi|154151190|ref|YP_001404808.1| - 0.0022 18.1 3.8 0.0059 16.8 0.3 2.7 2 0 0 2 2 2 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin RTC PF01137.21 gi|154151190|ref|YP_001404808.1| - 0.02 14.1 0.1 0.03 13.5 0.1 1.3 1 0 0 1 1 1 0 RNA 3'-terminal phosphate cyclase HTH_3 PF01381.22 gi|154151191|ref|YP_001404809.1| - 5.4e-15 55.2 0.0 6e-15 55.0 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|154151191|ref|YP_001404809.1| - 6.2e-11 42.2 0.0 7.5e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|154151191|ref|YP_001404809.1| - 4.1e-07 30.3 0.0 4.6e-07 30.1 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|154151191|ref|YP_001404809.1| - 0.00011 22.6 0.0 0.00013 22.3 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.6 gi|154151191|ref|YP_001404809.1| - 0.0026 17.7 0.0 0.0039 17.1 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|154151191|ref|YP_001404809.1| - 0.036 13.6 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_25 PF13413.6 gi|154151191|ref|YP_001404809.1| - 0.058 13.3 0.0 0.081 12.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|154151191|ref|YP_001404809.1| - 0.075 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain Sigma54_DBD PF04552.13 gi|154151191|ref|YP_001404809.1| - 0.13 12.0 0.0 0.14 11.8 0.0 1.0 1 0 0 1 1 1 0 Sigma-54, DNA binding domain DUF2178 PF09946.9 gi|154151192|ref|YP_001404810.1| - 3e-17 62.7 0.4 3e-17 62.7 0.4 1.5 2 0 0 2 2 2 1 Predicted membrane protein (DUF2178) PhoR PF11808.8 gi|154151192|ref|YP_001404810.1| - 0.00025 21.4 7.0 0.87 10.0 0.5 3.1 2 1 1 3 3 3 2 Phosphate regulon sensor protein PhoR DUF4173 PF13777.6 gi|154151192|ref|YP_001404810.1| - 0.016 14.7 1.6 0.016 14.7 1.6 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4173) Colicin_V PF02674.16 gi|154151192|ref|YP_001404810.1| - 0.037 14.0 0.4 0.037 14.0 0.4 2.6 2 1 1 3 3 3 0 Colicin V production protein O_anti_polymase PF01901.16 gi|154151192|ref|YP_001404810.1| - 0.039 13.2 4.0 0.037 13.3 1.4 1.8 2 0 0 2 2 2 0 Putative O-antigen polymerase DUF1418 PF07214.12 gi|154151192|ref|YP_001404810.1| - 0.31 10.9 4.0 15 5.5 0.0 3.5 2 1 2 4 4 4 0 Protein of unknown function (DUF1418) NMN_transporter PF04973.12 gi|154151192|ref|YP_001404810.1| - 1.6 8.6 10.3 0.1 12.6 3.9 1.8 1 1 0 2 2 2 0 Nicotinamide mononucleotide transporter DUF4133 PF13571.6 gi|154151192|ref|YP_001404810.1| - 3.3 8.1 10.2 0.16 12.4 2.6 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4133) Peptidase_M50B PF13398.6 gi|154151192|ref|YP_001404810.1| - 4.8 6.8 12.0 1.4 8.5 8.3 1.9 1 1 0 1 1 1 0 Peptidase M50B-like FtsX PF02687.21 gi|154151192|ref|YP_001404810.1| - 6.8 7.2 9.3 2.3e+02 2.3 9.3 2.7 1 1 0 1 1 1 0 FtsX-like permease family PRA1 PF03208.19 gi|154151192|ref|YP_001404810.1| - 7.4 6.2 10.6 0.41 10.3 4.7 1.8 2 0 0 2 2 2 0 PRA1 family protein DUF2207 PF09972.9 gi|154151193|ref|YP_001404811.1| - 0.026 13.3 2.0 0.028 13.2 2.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4811 PF16069.5 gi|154151193|ref|YP_001404811.1| - 0.035 14.0 0.2 0.05 13.5 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4811) DUF3754 PF12576.8 gi|154151193|ref|YP_001404811.1| - 0.041 13.8 0.5 0.061 13.3 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) SpoIIE PF07228.12 gi|154151194|ref|YP_001404812.1| - 1.7e-47 161.8 0.0 3e-47 161.0 0.0 1.4 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) dCache_1 PF02743.18 gi|154151194|ref|YP_001404812.1| - 1.5e-23 83.9 0.8 2.5e-23 83.1 0.8 1.4 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 gi|154151194|ref|YP_001404812.1| - 1.3e-13 51.1 0.1 3e-13 49.9 0.1 1.7 1 0 0 1 1 1 1 HAMP domain Cache_3-Cache_2 PF17201.4 gi|154151194|ref|YP_001404812.1| - 4.4e-05 22.9 0.1 0.00018 20.9 0.2 2.0 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain VIT1 PF01988.19 gi|154151195|ref|YP_001404813.1| - 3.4e-13 50.0 23.0 7.1e-10 39.1 3.4 2.3 1 1 1 2 2 2 2 VIT family COQ7 PF03232.13 gi|154151195|ref|YP_001404813.1| - 0.022 14.5 0.1 0.17 11.6 0.0 2.1 1 1 1 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Oxidored_q3 PF00499.20 gi|154151195|ref|YP_001404813.1| - 0.044 13.5 11.9 0.12 12.1 11.9 1.7 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Rubrerythrin PF02915.17 gi|154151195|ref|YP_001404813.1| - 0.12 12.8 0.2 1.6 9.1 0.1 2.1 2 0 0 2 2 2 0 Rubrerythrin HDC PF02329.16 gi|154151195|ref|YP_001404813.1| - 0.21 10.6 0.0 0.3 10.1 0.0 1.1 1 0 0 1 1 1 0 Histidine carboxylase PI chain Bax1-I PF01027.20 gi|154151195|ref|YP_001404813.1| - 1.2 9.0 20.3 6.3 6.6 20.3 2.0 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 FA_desaturase PF00487.24 gi|154151195|ref|YP_001404813.1| - 1.8 8.3 6.6 4.3 7.1 2.7 2.3 2 0 0 2 2 2 0 Fatty acid desaturase DUF2070 PF09843.9 gi|154151195|ref|YP_001404813.1| - 4.3 5.5 10.4 5.5 5.2 10.4 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) OrfB_Zn_ribbon PF07282.11 gi|154151198|ref|YP_001404816.1| - 4.4e-27 93.8 0.1 1e-26 92.6 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|154151198|ref|YP_001404816.1| - 0.001 19.3 0.1 0.002 18.4 0.1 1.5 1 0 0 1 1 1 1 C1 domain RuvC_1 PF18516.1 gi|154151198|ref|YP_001404816.1| - 0.021 14.0 0.0 0.035 13.3 0.0 1.4 1 1 0 1 1 1 0 RuvC nuclease domain DZR PF12773.7 gi|154151198|ref|YP_001404816.1| - 0.025 14.6 0.2 0.046 13.7 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|154151198|ref|YP_001404816.1| - 0.025 14.6 0.1 0.074 13.1 0.1 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 gi|154151198|ref|YP_001404816.1| - 0.027 14.5 1.6 0.096 12.8 1.6 1.9 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Toprim_Crpt PF13342.6 gi|154151198|ref|YP_001404816.1| - 0.031 14.2 0.3 0.083 12.9 0.3 1.7 1 0 0 1 1 1 0 C-terminal repeat of topoisomerase CpXC PF14353.6 gi|154151198|ref|YP_001404816.1| - 0.29 11.2 1.0 0.85 9.7 0.0 2.1 1 1 1 2 2 2 0 CpXC protein zf-ribbon_3 PF13248.6 gi|154151198|ref|YP_001404816.1| - 0.69 9.4 5.2 6.2 6.4 5.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|154151198|ref|YP_001404816.1| - 0.85 9.4 4.7 5.9 6.7 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|154151198|ref|YP_001404816.1| - 1.7 8.7 7.3 6.2 6.9 7.3 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|154151198|ref|YP_001404816.1| - 3.5 7.5 6.4 23 4.8 6.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|154151198|ref|YP_001404816.1| - 5.8 6.9 7.6 8.2 6.4 4.7 2.6 2 1 0 2 2 2 0 Nudix N-terminal UPF0547 PF10571.9 gi|154151198|ref|YP_001404816.1| - 9.5 6.4 7.6 3.1 7.9 2.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2070 PF09843.9 gi|154151199|ref|YP_001404817.1| - 2.9e-201 669.6 1.6 3.3e-201 669.5 1.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) PfkB PF00294.24 gi|154151200|ref|YP_001404818.1| - 3.5e-46 157.9 0.1 5.4e-46 157.3 0.1 1.3 1 1 0 1 1 1 1 pfkB family carbohydrate kinase DUF555 PF04475.12 gi|154151201|ref|YP_001404819.1| - 5.9e-47 158.2 0.2 6.6e-47 158.0 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) DUF4931 PF16285.5 gi|154151201|ref|YP_001404819.1| - 0.12 11.7 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4931) Init_tRNA_PT PF04179.12 gi|154151201|ref|YP_001404819.1| - 0.13 12.5 0.0 0.17 12.2 0.0 1.1 1 0 0 1 1 1 0 Rit1 DUSP-like domain Nitroreductase PF00881.24 gi|154151202|ref|YP_001404820.1| - 2.4e-31 109.0 0.1 3.5e-17 63.0 0.0 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|154151202|ref|YP_001404820.1| - 1.2e-08 34.8 0.0 0.002 17.7 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase YfdX PF10938.8 gi|154151203|ref|YP_001404821.1| - 0.014 15.3 0.3 0.019 14.9 0.3 1.2 1 0 0 1 1 1 0 YfdX protein DUF5350 PF17299.2 gi|154151204|ref|YP_001404822.1| - 1.4e-26 92.8 3.1 1.4e-26 92.8 3.1 1.7 2 0 0 2 2 2 1 Family of unknown function (DUF5350) Methyltransf_11 PF08241.12 gi|154151205|ref|YP_001404823.1| - 6.6e-25 87.6 0.0 1.2e-24 86.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154151205|ref|YP_001404823.1| - 1.4e-21 77.0 0.0 5.4e-21 75.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154151205|ref|YP_001404823.1| - 3.9e-18 65.8 0.0 5.4e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154151205|ref|YP_001404823.1| - 8.6e-16 58.1 0.0 1.3e-15 57.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|154151205|ref|YP_001404823.1| - 8.6e-16 58.0 0.0 6.8e-15 55.0 0.0 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|154151205|ref|YP_001404823.1| - 4e-15 56.4 0.0 1.2e-14 54.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|154151205|ref|YP_001404823.1| - 1.3e-07 31.2 0.0 3.1e-06 26.7 0.0 2.2 1 1 1 2 2 2 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|154151205|ref|YP_001404823.1| - 1.2e-05 25.0 0.0 1.9e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|154151205|ref|YP_001404823.1| - 0.0078 15.2 0.0 0.013 14.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) NodS PF05401.11 gi|154151205|ref|YP_001404823.1| - 0.0085 15.7 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.19 gi|154151205|ref|YP_001404823.1| - 0.012 15.4 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.15 gi|154151205|ref|YP_001404823.1| - 0.016 15.1 0.0 0.032 14.1 0.0 1.5 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|154151205|ref|YP_001404823.1| - 0.037 12.6 0.0 0.05 12.1 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase AdoMet_MTase PF07757.13 gi|154151205|ref|YP_001404823.1| - 0.13 12.7 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase MTS PF05175.14 gi|154151205|ref|YP_001404823.1| - 0.13 11.8 0.0 1 8.9 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase small domain Pox_MCEL PF03291.16 gi|154151205|ref|YP_001404823.1| - 0.15 11.1 0.0 0.36 9.9 0.0 1.6 1 1 1 2 2 2 0 mRNA capping enzyme DREV PF05219.12 gi|154151205|ref|YP_001404823.1| - 0.16 11.1 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase DNA_pol3_delta2 PF13177.6 gi|154151206|ref|YP_001404824.1| - 1e-08 35.1 0.0 1.9e-08 34.3 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 gi|154151206|ref|YP_001404824.1| - 1.8e-06 28.4 0.0 7.3e-06 26.4 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|154151206|ref|YP_001404824.1| - 4.4e-05 23.9 0.2 0.00014 22.3 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|154151206|ref|YP_001404824.1| - 0.00062 19.7 0.0 0.0015 18.4 0.0 1.7 2 0 0 2 2 2 1 Rad17 P-loop domain Sigma54_activ_2 PF14532.6 gi|154151206|ref|YP_001404824.1| - 0.0018 18.4 0.0 0.055 13.6 0.0 2.4 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|154151206|ref|YP_001404824.1| - 0.0041 16.6 0.0 0.0065 16.0 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region RuvB_N PF05496.12 gi|154151206|ref|YP_001404824.1| - 0.005 16.6 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|154151206|ref|YP_001404824.1| - 0.0057 16.1 0.0 0.0092 15.4 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|154151206|ref|YP_001404824.1| - 0.0059 15.8 0.0 0.009 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|154151206|ref|YP_001404824.1| - 0.0069 16.7 0.0 0.043 14.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|154151206|ref|YP_001404824.1| - 0.0074 16.6 1.6 0.092 13.1 0.4 2.4 1 1 1 2 2 2 1 AAA C-terminal domain AAA_33 PF13671.6 gi|154151206|ref|YP_001404824.1| - 0.051 13.7 0.0 0.089 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|154151206|ref|YP_001404824.1| - 0.076 13.5 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|154151206|ref|YP_001404824.1| - 0.077 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Rep_fac_C PF08542.11 gi|154151206|ref|YP_001404824.1| - 0.082 13.3 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 Replication factor C C-terminal domain ResIII PF04851.15 gi|154151206|ref|YP_001404824.1| - 0.14 12.2 0.0 3.8 7.5 0.0 2.1 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit TniB PF05621.11 gi|154151206|ref|YP_001404824.1| - 0.17 11.2 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial TniB protein PPS_PS PF02006.16 gi|154151207|ref|YP_001404825.1| - 2.4e-66 222.6 0.0 3.2e-66 222.2 0.0 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Glyco_trans_4_4 PF13579.6 gi|154151207|ref|YP_001404825.1| - 0.0058 17.1 0.6 0.0058 17.1 0.6 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain CoA_binding_2 PF13380.6 gi|154151207|ref|YP_001404825.1| - 0.12 12.9 0.1 0.38 11.3 0.0 1.8 2 0 0 2 2 2 0 CoA binding domain GHMP_kinases_N PF00288.26 gi|154151208|ref|YP_001404826.1| - 2.5e-08 34.0 1.5 5.1e-08 33.0 1.5 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain DFP PF04127.15 gi|154151209|ref|YP_001404827.1| - 1.2e-36 126.3 0.1 3e-36 125.0 0.0 1.6 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|154151209|ref|YP_001404827.1| - 1.8e-36 125.2 0.3 2.9e-36 124.6 0.3 1.3 1 0 0 1 1 1 1 Flavoprotein Pyr_redox PF00070.27 gi|154151209|ref|YP_001404827.1| - 0.017 15.7 0.0 0.041 14.5 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Met_10 PF02475.16 gi|154151210|ref|YP_001404828.1| - 1.1e-36 126.5 0.0 1.4e-36 126.2 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|154151210|ref|YP_001404828.1| - 4.1e-06 26.5 0.0 5.8e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|154151210|ref|YP_001404828.1| - 8.8e-06 25.4 0.0 2e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|154151210|ref|YP_001404828.1| - 2.9e-05 24.7 0.1 5.3e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|154151210|ref|YP_001404828.1| - 0.0084 16.1 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|154151210|ref|YP_001404828.1| - 0.036 13.5 0.0 0.047 13.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|154151210|ref|YP_001404828.1| - 0.049 14.3 0.0 0.092 13.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.17 gi|154151210|ref|YP_001404828.1| - 0.051 12.9 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Cons_hypoth95 PF03602.15 gi|154151210|ref|YP_001404828.1| - 0.055 13.1 0.0 0.085 12.5 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 SAM_MT PF04445.13 gi|154151210|ref|YP_001404828.1| - 0.062 12.7 0.1 0.089 12.2 0.1 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase NMD3 PF04981.13 gi|154151211|ref|YP_001404829.1| - 8.8e-51 172.7 0.1 1.1e-50 172.4 0.1 1.1 1 0 0 1 1 1 1 NMD3 family zf-ribbon_3 PF13248.6 gi|154151211|ref|YP_001404829.1| - 0.0067 15.8 3.9 0.0067 15.8 3.9 3.0 3 0 0 3 3 3 1 zinc-ribbon domain HATPase_c PF02518.26 gi|154151211|ref|YP_001404829.1| - 0.025 15.1 0.0 0.052 14.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OTCace PF00185.24 gi|154151211|ref|YP_001404829.1| - 0.11 12.5 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF2752 PF10825.8 gi|154151211|ref|YP_001404829.1| - 0.12 12.5 0.2 0.12 12.5 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) Malectin PF11721.8 gi|154151211|ref|YP_001404829.1| - 0.19 11.8 0.0 0.34 11.0 0.0 1.3 1 0 0 1 1 1 0 Malectin domain zinc_ribbon_2 PF13240.6 gi|154151211|ref|YP_001404829.1| - 0.61 9.9 9.6 0.44 10.3 3.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|154151211|ref|YP_001404829.1| - 0.67 10.0 15.8 4.5 7.4 9.8 3.1 2 1 0 2 2 2 0 Double zinc ribbon CpXC PF14353.6 gi|154151211|ref|YP_001404829.1| - 1.3 9.1 5.6 4.3 7.4 4.6 2.3 2 1 0 2 2 2 0 CpXC protein RecR PF02132.15 gi|154151211|ref|YP_001404829.1| - 2 8.1 8.8 0.15 11.6 0.7 2.7 3 0 0 3 3 3 0 RecR protein NOB1_Zn_bind PF08772.11 gi|154151211|ref|YP_001404829.1| - 4.6 7.5 7.9 5.9 7.1 0.2 2.8 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like GFA PF04828.14 gi|154151211|ref|YP_001404829.1| - 7.7 6.9 8.5 16 5.9 0.0 3.3 2 1 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DUF424 PF04242.13 gi|154151212|ref|YP_001404830.1| - 2.4e-27 95.0 0.0 2.7e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TatD_DNase PF01026.21 gi|154151213|ref|YP_001404831.1| - 1e-16 61.1 0.0 1.3e-13 50.9 0.0 2.0 1 1 0 2 2 2 2 TatD related DNase DHNA PF04038.12 gi|154151214|ref|YP_001404832.1| - 1.9e-37 128.0 0.0 2.3e-37 127.8 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase MCM PF00493.23 gi|154151215|ref|YP_001404833.1| - 2.9e-96 320.9 0.1 1e-95 319.1 0.0 1.8 2 0 0 2 2 2 1 MCM P-loop domain MCM_OB PF17207.3 gi|154151215|ref|YP_001404833.1| - 4.1e-32 110.7 0.1 8.1e-32 109.7 0.1 1.5 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|154151215|ref|YP_001404833.1| - 5.3e-25 87.7 0.2 1.6e-24 86.2 0.1 1.9 2 0 0 2 2 2 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|154151215|ref|YP_001404833.1| - 5.9e-08 32.3 0.0 1.2e-05 24.8 0.0 3.2 3 1 0 4 4 4 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|154151215|ref|YP_001404833.1| - 5.1e-05 23.1 0.0 0.00026 20.9 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|154151215|ref|YP_001404833.1| - 6.8e-05 22.9 0.0 0.00024 21.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|154151215|ref|YP_001404833.1| - 0.018 14.8 0.0 0.11 12.2 0.0 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain EpmC PF04315.12 gi|154151215|ref|YP_001404833.1| - 0.14 11.9 0.1 1.1 9.0 0.0 2.3 3 0 0 3 3 3 0 Elongation factor P hydroxylase AAA_16 PF13191.6 gi|154151215|ref|YP_001404833.1| - 0.15 12.5 0.2 0.76 10.1 0.1 2.4 2 1 0 2 2 2 0 AAA ATPase domain Rep_fac_C PF08542.11 gi|154151216|ref|YP_001404834.1| - 8.7e-19 67.7 0.0 3.6e-18 65.8 0.0 2.0 2 0 0 2 2 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|154151216|ref|YP_001404834.1| - 3.8e-15 56.1 0.0 1.2e-09 38.2 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA PF00004.29 gi|154151216|ref|YP_001404834.1| - 2e-14 54.1 0.0 4.2e-14 53.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|154151216|ref|YP_001404834.1| - 1.6e-07 31.2 0.2 4.2e-06 26.6 0.0 2.8 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|154151216|ref|YP_001404834.1| - 4.5e-06 27.1 1.6 0.00061 20.2 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|154151216|ref|YP_001404834.1| - 4.1e-05 23.8 0.1 9.4e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|154151216|ref|YP_001404834.1| - 6.7e-05 22.9 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|154151216|ref|YP_001404834.1| - 0.00021 21.1 0.0 0.0004 20.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|154151216|ref|YP_001404834.1| - 0.0003 20.8 0.0 0.00043 20.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|154151216|ref|YP_001404834.1| - 0.00097 19.4 1.4 1.1 9.6 0.2 2.9 2 1 1 3 3 3 1 AAA domain AAA_24 PF13479.6 gi|154151216|ref|YP_001404834.1| - 0.0015 18.3 0.0 0.0028 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|154151216|ref|YP_001404834.1| - 0.002 17.5 0.0 0.81 9.0 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DNA_pol3_delta PF06144.13 gi|154151216|ref|YP_001404834.1| - 0.0028 17.5 0.0 0.0043 16.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Viral_helicase1 PF01443.18 gi|154151216|ref|YP_001404834.1| - 0.0062 16.3 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.6 gi|154151216|ref|YP_001404834.1| - 0.0096 16.5 0.0 0.019 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|154151216|ref|YP_001404834.1| - 0.014 14.6 0.0 0.32 10.1 0.0 2.2 1 1 1 2 2 2 0 TIP49 P-loop domain Sigma54_activat PF00158.26 gi|154151216|ref|YP_001404834.1| - 0.019 14.7 0.0 7.3 6.3 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_2 PF07724.14 gi|154151216|ref|YP_001404834.1| - 0.025 14.7 0.0 0.35 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) TPR_16 PF13432.6 gi|154151216|ref|YP_001404834.1| - 0.025 15.2 1.8 13 6.6 0.2 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat Sigma54_activ_2 PF14532.6 gi|154151216|ref|YP_001404834.1| - 0.027 14.6 0.0 0.07 13.2 0.0 1.6 1 1 0 1 1 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|154151216|ref|YP_001404834.1| - 0.041 13.6 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|154151216|ref|YP_001404834.1| - 0.072 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain TPR_6 PF13174.6 gi|154151216|ref|YP_001404834.1| - 0.082 13.6 3.0 6.5 7.6 0.1 3.9 4 0 0 4 4 3 0 Tetratricopeptide repeat MeaB PF03308.16 gi|154151216|ref|YP_001404834.1| - 0.084 11.8 0.1 3.4 6.6 0.0 2.2 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|154151216|ref|YP_001404834.1| - 0.12 12.4 0.1 0.64 10.0 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) TPR_7 PF13176.6 gi|154151216|ref|YP_001404834.1| - 0.12 12.5 0.0 29 5.0 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_7 PF12775.7 gi|154151216|ref|YP_001404834.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TPR_14 PF13428.6 gi|154151216|ref|YP_001404834.1| - 0.13 13.1 2.6 6.5 7.9 0.0 3.2 3 0 0 3 3 2 0 Tetratricopeptide repeat CbiA PF01656.23 gi|154151216|ref|YP_001404834.1| - 0.13 12.3 0.0 0.82 9.7 0.1 2.0 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain ResIII PF04851.15 gi|154151216|ref|YP_001404834.1| - 0.15 12.0 0.0 0.53 10.3 0.0 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit TPR_19 PF14559.6 gi|154151216|ref|YP_001404834.1| - 0.34 11.5 2.6 32 5.1 0.0 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF3821 PF12863.7 gi|154151217|ref|YP_001404835.1| - 4.5e-59 199.9 3.3 5.8e-59 199.5 3.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) MucBP PF06458.12 gi|154151217|ref|YP_001404835.1| - 0.21 12.6 0.1 0.21 12.6 0.1 2.4 3 0 0 3 3 3 0 MucBP domain TPR_2 PF07719.17 gi|154151218|ref|YP_001404836.1| - 3.7e-10 39.1 8.3 0.00082 19.3 1.4 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|154151218|ref|YP_001404836.1| - 3e-07 30.0 5.1 0.00055 19.6 1.3 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154151218|ref|YP_001404836.1| - 2.5e-06 28.0 6.7 0.00039 21.0 0.3 2.5 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154151218|ref|YP_001404836.1| - 9e-05 22.4 3.8 0.0034 17.5 0.6 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154151218|ref|YP_001404836.1| - 0.00011 22.4 7.1 0.0024 18.1 2.1 3.5 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154151218|ref|YP_001404836.1| - 0.0035 18.0 2.5 7.3 7.7 0.0 3.2 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154151218|ref|YP_001404836.1| - 0.0099 15.9 1.8 1.1 9.4 0.3 2.7 3 0 0 3 3 3 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|154151218|ref|YP_001404836.1| - 0.034 14.2 1.2 0.35 10.9 0.2 2.5 2 1 0 2 2 2 0 Domain of Unknown Function (DUF3856) TPR_19 PF14559.6 gi|154151218|ref|YP_001404836.1| - 0.14 12.7 4.3 1.9 9.0 0.3 2.5 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|154151218|ref|YP_001404836.1| - 0.22 12.3 2.0 4.8 8.0 0.2 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154151218|ref|YP_001404836.1| - 0.46 10.2 12.6 1.3 8.8 0.6 4.3 4 1 1 5 5 5 0 TPR repeat TPR_10 PF13374.6 gi|154151218|ref|YP_001404836.1| - 3.1 7.8 9.9 20 5.2 0.0 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF2277 PF10041.9 gi|154151219|ref|YP_001404837.1| - 0.028 14.7 0.0 0.078 13.3 0.0 1.8 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) Metallophos PF00149.28 gi|154151220|ref|YP_001404838.1| - 1.9e-07 31.8 0.1 3.1e-07 31.1 0.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|154151220|ref|YP_001404838.1| - 2.1e-06 28.0 0.3 6.1e-06 26.5 0.3 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|154151220|ref|YP_001404838.1| - 0.03 13.6 0.0 1.1 8.5 0.0 2.2 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily PRP1_N PF06424.12 gi|154151220|ref|YP_001404838.1| - 0.16 12.4 0.0 0.23 11.9 0.0 1.2 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal DEAD PF00270.29 gi|154151221|ref|YP_001404839.1| - 5.5e-31 107.7 0.0 1.2e-30 106.6 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|154151221|ref|YP_001404839.1| - 2.2e-29 102.7 0.0 5e-29 101.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|154151221|ref|YP_001404839.1| - 2.1e-21 76.4 0.0 1.8e-20 73.3 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|154151221|ref|YP_001404839.1| - 9.8e-09 35.4 0.0 2e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|154151221|ref|YP_001404839.1| - 0.0015 18.8 0.0 0.0077 16.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain HypA PF01155.19 gi|154151221|ref|YP_001404839.1| - 0.015 15.3 0.3 0.18 11.8 0.0 2.7 3 0 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SNF2_N PF00176.23 gi|154151221|ref|YP_001404839.1| - 0.024 13.4 0.0 0.041 12.6 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_19 PF13245.6 gi|154151221|ref|YP_001404839.1| - 0.044 14.1 0.9 0.26 11.6 0.2 2.5 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|154151221|ref|YP_001404839.1| - 0.057 13.1 1.2 0.7 9.6 0.2 3.0 2 1 0 2 2 2 0 AAA domain FAD_binding_4 PF01565.23 gi|154151221|ref|YP_001404839.1| - 0.16 11.7 0.2 3.1 7.6 0.1 2.9 1 1 1 2 2 2 0 FAD binding domain DUF1451 PF07295.11 gi|154151221|ref|YP_001404839.1| - 0.23 11.5 0.3 0.6 10.1 0.3 1.6 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|154151221|ref|YP_001404839.1| - 0.41 10.8 1.6 0.69 10.1 0.2 2.0 2 0 0 2 2 2 0 Zinc ribbon domain TBP PF00352.21 gi|154151222|ref|YP_001404840.1| - 4.8e-48 161.0 0.2 3.5e-25 87.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|154151222|ref|YP_001404840.1| - 1.1e-06 28.6 0.0 0.022 14.9 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) NdhS PF11623.8 gi|154151222|ref|YP_001404840.1| - 0.12 12.0 0.0 3.9 7.2 0.0 2.4 2 0 0 2 2 2 0 NAD(P)H dehydrogenase subunit S AMP-binding PF00501.28 gi|154151223|ref|YP_001404841.1| - 1.1e-79 268.0 0.0 1.3e-79 267.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|154151223|ref|YP_001404841.1| - 1.5e-25 89.9 0.3 3.7e-25 88.7 0.3 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|154151224|ref|YP_001404842.1| - 1.4e-86 290.7 0.0 1.7e-86 290.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|154151224|ref|YP_001404842.1| - 1.7e-24 86.6 0.1 3.2e-24 85.7 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain RHH_1 PF01402.21 gi|154151224|ref|YP_001404842.1| - 0.0068 16.3 0.1 0.017 15.1 0.1 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|154151224|ref|YP_001404842.1| - 0.18 12.0 0.0 0.5 10.5 0.0 1.8 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1624 PF07786.12 gi|154151225|ref|YP_001404843.1| - 7.3e-72 241.5 16.7 8.3e-72 241.4 16.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.22 gi|154151225|ref|YP_001404843.1| - 1.1e-07 31.2 26.6 0.0017 17.5 14.3 2.3 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.9 gi|154151225|ref|YP_001404843.1| - 0.00033 19.6 6.5 0.00033 19.6 6.5 2.8 1 1 1 2 2 2 2 OpgC protein P-II PF00543.22 gi|154151227|ref|YP_001404845.1| - 8.8e-37 125.8 2.3 9.8e-37 125.7 2.3 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Vps23_core PF09454.10 gi|154151227|ref|YP_001404845.1| - 0.052 13.5 0.1 0.098 12.6 0.0 1.6 2 0 0 2 2 2 0 Vps23 core domain Ammonium_transp PF00909.21 gi|154151228|ref|YP_001404846.1| - 1.9e-130 435.2 43.0 2.1e-130 435.0 43.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family Ammonium_transp PF00909.21 gi|154151230|ref|YP_001404848.1| - 2.4e-128 428.2 44.0 2.7e-128 428.1 44.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family LapA_dom PF06305.11 gi|154151230|ref|YP_001404848.1| - 0.078 12.8 0.2 0.078 12.8 0.2 5.4 6 0 0 6 6 6 0 Lipopolysaccharide assembly protein A domain MASE5 PF17178.4 gi|154151230|ref|YP_001404848.1| - 3.8 7.3 12.7 0.36 10.6 1.0 3.2 4 0 0 4 4 4 0 Membrane-associated sensor Gln-synt_C PF00120.24 gi|154151231|ref|YP_001404849.1| - 6.2e-131 436.5 0.0 7.4e-131 436.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|154151231|ref|YP_001404849.1| - 1.3e-29 101.8 0.0 2.9e-29 100.6 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|154151231|ref|YP_001404849.1| - 0.0056 16.5 0.0 0.039 13.8 0.0 2.1 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain GATase_6 PF13522.6 gi|154151232|ref|YP_001404850.1| - 4.2e-10 40.0 0.0 1.6e-08 34.8 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|154151232|ref|YP_001404850.1| - 4.5e-10 38.8 0.2 5.9e-08 31.8 0.2 2.1 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_7 PF13537.6 gi|154151232|ref|YP_001404850.1| - 4.1e-07 29.9 0.0 0.014 15.3 0.0 2.3 2 0 0 2 2 2 2 Glutamine amidotransferase domain Glu_synthase PF01645.17 gi|154151233|ref|YP_001404851.1| - 6.4e-137 456.6 0.2 1e-136 456.0 0.2 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|154151233|ref|YP_001404851.1| - 5e-17 62.3 0.1 4e-09 36.3 0.1 2.5 2 0 0 2 2 2 2 Glutamate synthase central domain NMO PF03060.15 gi|154151233|ref|YP_001404851.1| - 3.3e-11 43.2 2.1 8e-11 41.9 2.1 1.6 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|154151233|ref|YP_001404851.1| - 4.7e-11 42.3 8.2 5.4e-08 32.3 4.2 3.1 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|154151233|ref|YP_001404851.1| - 1.5e-09 37.3 6.1 9.7e-09 34.7 3.6 2.7 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4_9 PF13187.6 gi|154151233|ref|YP_001404851.1| - 1.9e-07 31.1 11.8 1.9e-07 31.1 11.8 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|154151233|ref|YP_001404851.1| - 6.2e-06 26.7 17.9 0.00022 21.7 13.6 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|154151233|ref|YP_001404851.1| - 7.5e-06 26.0 8.7 7.5e-06 26.0 8.7 2.2 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154151233|ref|YP_001404851.1| - 2.3e-05 24.4 16.8 6.5e-05 23.0 11.3 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|154151233|ref|YP_001404851.1| - 3.5e-05 23.4 10.8 0.00022 20.9 2.0 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154151233|ref|YP_001404851.1| - 0.00043 21.1 14.7 0.0033 18.3 0.5 3.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|154151233|ref|YP_001404851.1| - 0.001 19.0 24.7 0.0098 15.9 4.4 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain DHO_dh PF01180.21 gi|154151233|ref|YP_001404851.1| - 0.0012 18.1 3.9 0.0095 15.2 3.9 2.1 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|154151233|ref|YP_001404851.1| - 0.0017 17.9 0.1 0.0036 16.8 0.1 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_4 PF12800.7 gi|154151233|ref|YP_001404851.1| - 0.033 14.7 1.9 0.033 14.7 1.9 3.6 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154151233|ref|YP_001404851.1| - 0.037 14.1 1.3 0.037 14.1 1.3 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|154151233|ref|YP_001404851.1| - 0.073 13.5 18.2 31 5.1 14.4 3.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|154151233|ref|YP_001404851.1| - 0.17 12.0 2.1 0.49 10.5 2.1 1.8 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_17 PF13534.6 gi|154151233|ref|YP_001404851.1| - 0.19 12.3 18.3 5.4 7.6 3.1 3.4 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|154151233|ref|YP_001404851.1| - 0.64 10.9 17.1 0.52 11.2 1.3 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154151233|ref|YP_001404851.1| - 6 7.5 14.6 0.53 10.9 0.6 3.2 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I GXGXG PF01493.19 gi|154151234|ref|YP_001404852.1| - 4.3e-38 130.8 8.3 5.4e-38 130.5 8.3 1.1 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.13 gi|154151235|ref|YP_001404853.1| - 5e-33 114.1 0.0 9e-33 113.3 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|154151235|ref|YP_001404853.1| - 2.8e-19 69.0 0.1 5.7e-19 68.0 0.1 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|154151235|ref|YP_001404853.1| - 1.3e-08 34.3 3.3 1.3e-08 34.3 3.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154151235|ref|YP_001404853.1| - 9e-08 31.9 18.9 5e-07 29.5 2.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|154151235|ref|YP_001404853.1| - 2.3e-06 27.6 10.5 2.3e-06 27.6 10.5 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|154151235|ref|YP_001404853.1| - 4.8e-06 27.1 11.3 4.8e-06 27.1 11.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154151235|ref|YP_001404853.1| - 5.6e-06 26.4 22.1 0.00018 21.6 11.6 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154151235|ref|YP_001404853.1| - 3e-05 24.9 11.7 0.015 16.2 10.9 3.3 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|154151235|ref|YP_001404853.1| - 3.8e-05 23.9 15.4 0.00077 19.8 2.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|154151235|ref|YP_001404853.1| - 5.3e-05 23.1 2.9 5.3e-05 23.1 2.9 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154151235|ref|YP_001404853.1| - 0.0028 17.7 21.7 0.0065 16.6 2.8 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|154151235|ref|YP_001404853.1| - 0.018 16.0 19.1 0.098 13.6 7.6 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|154151235|ref|YP_001404853.1| - 0.018 15.5 9.9 0.31 11.5 3.6 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|154151235|ref|YP_001404853.1| - 0.067 13.9 4.3 0.21 12.3 1.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|154151235|ref|YP_001404853.1| - 0.12 13.3 0.4 0.12 13.3 0.4 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|154151235|ref|YP_001404853.1| - 0.13 12.9 10.9 0.33 11.5 3.7 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|154151235|ref|YP_001404853.1| - 2.9 8.1 11.1 3.3 7.9 2.7 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154151235|ref|YP_001404853.1| - 7.1 7.3 16.6 0.27 11.8 3.1 2.7 2 1 2 4 4 3 0 4Fe-4S dicluster domain P-II PF00543.22 gi|154151237|ref|YP_001404855.1| - 1.3e-38 131.7 0.7 1.5e-38 131.5 0.7 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF1211 PF06736.11 gi|154151238|ref|YP_001404856.1| - 3.1e-24 85.2 8.4 3.1e-24 85.2 8.4 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1211) Response_reg PF00072.24 gi|154151239|ref|YP_001404857.1| - 1.1e-21 77.1 0.0 1.3e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|154151240|ref|YP_001404858.1| - 3.6e-07 30.3 0.0 5.2e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain NPCBM_assoc PF10633.9 gi|154151241|ref|YP_001404859.1| - 3e-09 37.0 8.4 0.0047 17.1 0.1 4.1 3 1 0 3 3 3 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|154151241|ref|YP_001404859.1| - 0.00033 20.9 14.7 0.032 14.5 0.8 4.0 3 2 0 3 3 3 2 CARDB DUF11 PF01345.18 gi|154151241|ref|YP_001404859.1| - 5.1 7.5 15.1 30 5.0 1.2 4.4 3 2 0 3 3 3 0 Domain of unknown function DUF11 CARDB PF07705.11 gi|154151242|ref|YP_001404860.1| - 3.5e-09 36.8 2.8 0.01 16.1 0.0 3.6 3 1 0 3 3 3 3 CARDB NPCBM_assoc PF10633.9 gi|154151242|ref|YP_001404860.1| - 6e-05 23.2 6.0 0.0029 17.8 0.1 5.2 5 1 0 5 5 5 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|154151242|ref|YP_001404860.1| - 0.72 10.2 18.2 1.4 9.2 1.4 5.0 3 3 0 3 3 3 0 Domain of unknown function DUF11 MMPL PF03176.15 gi|154151243|ref|YP_001404861.1| - 6.7e-46 156.7 23.3 4.3e-24 85.1 10.5 3.2 3 0 0 3 3 3 2 MMPL family Sterol-sensing PF12349.8 gi|154151243|ref|YP_001404861.1| - 1.2e-10 41.5 14.9 1.5e-06 28.1 3.6 2.8 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|154151243|ref|YP_001404861.1| - 1.8e-07 30.8 29.4 1.2e-05 24.8 10.0 2.6 2 0 0 2 2 2 2 Protein export membrane protein Patched PF02460.18 gi|154151243|ref|YP_001404861.1| - 0.0037 15.4 26.8 0.025 12.7 5.8 2.2 2 0 0 2 2 2 2 Patched family ACR_tran PF00873.19 gi|154151243|ref|YP_001404861.1| - 0.0076 14.0 31.1 0.12 10.0 4.7 2.1 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family CARDB PF07705.11 gi|154151244|ref|YP_001404862.1| - 1.5e-07 31.6 4.5 0.018 15.3 0.1 3.5 3 1 0 3 3 3 3 CARDB NPCBM_assoc PF10633.9 gi|154151244|ref|YP_001404862.1| - 3.8e-06 27.0 6.0 0.094 13.0 0.2 4.2 4 2 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|154151244|ref|YP_001404862.1| - 0.0062 16.8 8.3 1.2 9.5 0.2 4.4 3 1 0 3 3 3 2 Domain of unknown function DUF11 TetR_N PF00440.23 gi|154151245|ref|YP_001404863.1| - 1.9e-12 46.7 0.4 3.3e-12 46.0 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|154151245|ref|YP_001404863.1| - 0.033 14.4 0.0 0.071 13.3 0.0 1.5 1 0 0 1 1 1 0 BetI-type transcriptional repressor, C-terminal TetR_C_11 PF16859.5 gi|154151245|ref|YP_001404863.1| - 0.13 12.5 0.0 0.36 11.1 0.0 1.7 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TM_helix PF05552.12 gi|154151246|ref|YP_001404864.1| - 2.7e-10 40.1 9.8 1e-07 31.8 2.4 3.9 4 0 0 4 4 4 2 Conserved TM helix PDGLE PF13190.6 gi|154151246|ref|YP_001404864.1| - 0.2 11.6 0.2 0.2 11.6 0.2 2.3 2 0 0 2 2 2 0 PDGLE domain FtsX PF02687.21 gi|154151246|ref|YP_001404864.1| - 5.9 7.4 22.0 2.7 8.5 3.1 3.3 1 1 2 3 3 3 0 FtsX-like permease family TetR_N PF00440.23 gi|154151247|ref|YP_001404865.1| - 4.5e-09 36.0 0.1 7.8e-09 35.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|154151247|ref|YP_001404865.1| - 0.0062 16.7 0.5 0.021 15.1 0.0 2.0 2 1 1 3 3 3 1 BetI-type transcriptional repressor, C-terminal TetR_C_11 PF16859.5 gi|154151247|ref|YP_001404865.1| - 0.015 15.6 0.1 0.027 14.8 0.1 1.5 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain tRNA_NucTransf2 PF09249.11 gi|154151248|ref|YP_001404866.1| - 5.9e-45 152.2 0.0 1.5e-44 150.9 0.0 1.6 2 0 0 2 2 2 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|154151248|ref|YP_001404866.1| - 5.6e-10 39.4 0.0 1.1e-09 38.4 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|154151248|ref|YP_001404866.1| - 0.021 15.0 0.0 0.042 14.0 0.0 1.4 1 0 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain LigT_PEase PF02834.16 gi|154151249|ref|YP_001404867.1| - 6.9e-18 64.6 0.0 1.1e-07 31.9 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|154151249|ref|YP_001404867.1| - 0.0001 22.2 0.0 0.00021 21.2 0.0 1.5 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily Glutaredoxin PF00462.24 gi|154151250|ref|YP_001404868.1| - 7.3e-07 29.3 0.0 9.9e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin NRDD PF13597.6 gi|154151251|ref|YP_001404869.1| - 3.5e-130 435.5 0.0 4.5e-130 435.1 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.16 gi|154151251|ref|YP_001404869.1| - 0.0037 17.8 0.0 0.011 16.3 0.0 1.7 1 0 0 1 1 1 1 ATP cone domain DUF2953 PF11167.8 gi|154151251|ref|YP_001404869.1| - 0.11 12.5 0.5 0.3 11.2 0.5 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2953) CS PF04969.16 gi|154151252|ref|YP_001404870.1| - 0.047 14.7 0.0 0.067 14.2 0.0 1.2 1 0 0 1 1 1 0 CS domain HTH_5 PF01022.20 gi|154151253|ref|YP_001404871.1| - 9.2e-09 35.0 1.1 7.5e-08 32.1 0.2 2.5 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|154151253|ref|YP_001404871.1| - 6.9e-07 29.2 1.1 1.7e-05 24.8 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|154151253|ref|YP_001404871.1| - 4.8e-06 26.4 1.9 0.042 13.8 0.2 2.4 2 0 0 2 2 2 2 MarR family Sulfolobus_pRN PF05584.11 gi|154151253|ref|YP_001404871.1| - 0.0015 18.5 0.0 0.0037 17.3 0.0 1.7 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_24 PF13412.6 gi|154151253|ref|YP_001404871.1| - 0.022 14.3 1.1 0.2 11.3 0.6 2.6 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|154151253|ref|YP_001404871.1| - 0.024 14.5 0.1 9.9 6.1 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DDRGK PF09756.9 gi|154151253|ref|YP_001404871.1| - 0.025 14.2 0.9 0.13 11.8 0.0 2.2 2 1 1 3 3 3 0 DDRGK domain DUF4224 PF13986.6 gi|154151253|ref|YP_001404871.1| - 0.03 14.2 0.5 0.091 12.7 0.5 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) DprA_WH PF17782.1 gi|154151253|ref|YP_001404871.1| - 0.035 14.2 0.6 7.9 6.7 0.0 2.8 3 0 0 3 3 3 0 DprA winged helix domain Rrf2 PF02082.20 gi|154151253|ref|YP_001404871.1| - 0.067 13.5 0.7 8.3 6.8 0.0 3.0 3 0 0 3 3 3 0 Transcriptional regulator Gp-FAR-1 PF05823.12 gi|154151253|ref|YP_001404871.1| - 0.1 13.0 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DUF1459 PF07312.11 gi|154151255|ref|YP_001404873.1| - 0.34 11.1 3.5 0.3 11.3 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1459) KTSC PF13619.6 gi|154151256|ref|YP_001404874.1| - 1.6e-20 72.6 0.1 1.9e-20 72.5 0.1 1.1 1 0 0 1 1 1 1 KTSC domain MiAMP1 PF09117.10 gi|154151256|ref|YP_001404874.1| - 0.11 12.7 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 MiAMP1 Sod_Fe_C PF02777.18 gi|154151257|ref|YP_001404875.1| - 5.8e-35 119.5 0.7 1e-34 118.7 0.7 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|154151257|ref|YP_001404875.1| - 1e-29 102.8 1.1 1.8e-29 102.0 1.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain IMPDH PF00478.25 gi|154151258|ref|YP_001404876.1| - 1.4e-149 497.8 12.3 1.6e-149 497.6 12.3 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|154151258|ref|YP_001404876.1| - 1e-23 83.6 1.4 1.4e-10 41.4 0.1 2.8 2 0 0 2 2 2 2 CBS domain FMN_dh PF01070.18 gi|154151258|ref|YP_001404876.1| - 1.2e-11 44.3 5.4 2.3e-11 43.3 4.4 1.9 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|154151258|ref|YP_001404876.1| - 1.5e-09 37.7 20.4 7.7e-07 28.8 11.8 3.2 1 1 3 4 4 4 2 Nitronate monooxygenase His_biosynth PF00977.21 gi|154151258|ref|YP_001404876.1| - 6e-06 25.9 5.4 0.00076 19.0 0.1 3.0 2 1 1 3 3 3 2 Histidine biosynthesis protein Dus PF01207.17 gi|154151258|ref|YP_001404876.1| - 0.00027 20.2 2.3 0.015 14.4 0.1 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) Glu_synthase PF01645.17 gi|154151258|ref|YP_001404876.1| - 0.00045 19.5 8.1 0.00084 18.6 8.1 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase G3P_antiterm PF04309.12 gi|154151258|ref|YP_001404876.1| - 0.014 14.9 1.9 0.39 10.1 0.2 2.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Ribosomal_S11 PF00411.19 gi|154151258|ref|YP_001404876.1| - 0.045 14.2 1.4 0.14 12.6 1.4 1.9 1 0 0 1 1 1 0 Ribosomal protein S11 ThiG PF05690.14 gi|154151258|ref|YP_001404876.1| - 0.12 11.6 12.5 0.017 14.5 6.5 2.6 3 1 0 3 3 3 0 Thiazole biosynthesis protein ThiG DUF3231 PF11553.8 gi|154151258|ref|YP_001404876.1| - 0.17 11.5 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) 4HFCP_synth PF04476.13 gi|154151259|ref|YP_001404877.1| - 2e-81 273.1 0.0 2.3e-81 272.9 0.0 1.0 1 0 0 1 1 1 1 4-HFC-P synthase His_biosynth PF00977.21 gi|154151260|ref|YP_001404878.1| - 2.8e-12 46.6 0.0 4.9e-12 45.8 0.0 1.4 1 1 0 1 1 1 1 Histidine biosynthesis protein Thymidylate_kin PF02223.17 gi|154151261|ref|YP_001404879.1| - 2.8e-38 131.4 0.0 3.4e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|154151261|ref|YP_001404879.1| - 0.00081 19.7 0.1 0.002 18.4 0.1 1.7 1 1 1 2 2 2 1 AAA domain dNK PF01712.19 gi|154151261|ref|YP_001404879.1| - 0.00093 19.1 0.0 0.0039 17.1 0.0 1.8 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_30 PF13604.6 gi|154151261|ref|YP_001404879.1| - 0.0014 18.4 0.1 0.085 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|154151261|ref|YP_001404879.1| - 0.0026 18.3 0.0 0.014 15.9 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|154151261|ref|YP_001404879.1| - 0.0051 17.0 0.1 0.058 13.6 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|154151261|ref|YP_001404879.1| - 0.011 16.0 0.0 0.034 14.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|154151261|ref|YP_001404879.1| - 0.019 15.3 0.1 0.036 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|154151261|ref|YP_001404879.1| - 0.058 12.7 0.5 1.4 8.2 0.1 2.5 2 1 1 3 3 3 0 Zeta toxin AAA_17 PF13207.6 gi|154151261|ref|YP_001404879.1| - 0.059 13.8 0.0 2.4 8.6 0.0 2.6 2 1 1 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|154151261|ref|YP_001404879.1| - 0.094 12.5 0.2 0.18 11.6 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain KAP_NTPase PF07693.14 gi|154151261|ref|YP_001404879.1| - 0.096 11.9 0.0 0.096 11.9 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain KTI12 PF08433.10 gi|154151261|ref|YP_001404879.1| - 0.1 12.0 0.1 0.32 10.4 0.0 1.9 2 1 0 2 2 2 0 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|154151261|ref|YP_001404879.1| - 0.14 11.3 0.0 0.58 9.3 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain Ploopntkinase1 PF18748.1 gi|154151261|ref|YP_001404879.1| - 0.15 11.6 0.0 0.88 9.1 0.0 2.0 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 CKS PF01111.19 gi|154151261|ref|YP_001404879.1| - 0.17 12.2 0.0 0.35 11.2 0.0 1.6 2 0 0 2 2 1 0 Cyclin-dependent kinase regulatory subunit ABC_tran PF00005.27 gi|154151261|ref|YP_001404879.1| - 0.19 12.2 0.0 0.4 11.2 0.0 1.6 2 0 0 2 2 2 0 ABC transporter EVE PF01878.18 gi|154151262|ref|YP_001404880.1| - 1.2e-19 70.8 0.0 2.3e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 EVE domain HNH PF01844.23 gi|154151262|ref|YP_001404880.1| - 5e-08 33.0 4.0 9.4e-08 32.1 4.0 1.4 1 0 0 1 1 1 1 HNH endonuclease zf-RING_7 PF02591.15 gi|154151262|ref|YP_001404880.1| - 0.036 14.2 2.4 2 8.7 0.1 3.5 3 0 0 3 3 3 0 C4-type zinc ribbon domain HNH_2 PF13391.6 gi|154151262|ref|YP_001404880.1| - 0.047 13.8 0.4 0.14 12.3 0.4 1.8 1 1 0 1 1 1 0 HNH endonuclease C1_1 PF00130.22 gi|154151262|ref|YP_001404880.1| - 0.19 11.7 1.5 11 6.0 0.2 2.3 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) tRNA-synt_1 PF00133.22 gi|154151263|ref|YP_001404881.1| - 2.1e-132 442.4 1.0 3.2e-131 438.5 1.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|154151263|ref|YP_001404881.1| - 3.7e-35 121.1 0.0 7.4e-35 120.1 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|154151263|ref|YP_001404881.1| - 3.1e-26 92.0 0.8 4.1e-14 52.1 0.0 3.6 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|154151263|ref|YP_001404881.1| - 2.2e-05 24.1 0.0 7.7e-05 22.3 0.0 1.8 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|154151263|ref|YP_001404881.1| - 3.6e-05 23.3 0.0 0.13 11.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain zf_C2H2_10 PF18414.1 gi|154151263|ref|YP_001404881.1| - 1.5 8.4 7.5 12 5.5 3.9 2.4 2 0 0 2 2 2 0 C2H2 type zinc-finger DZR PF12773.7 gi|154151263|ref|YP_001404881.1| - 6.7 6.8 7.5 77 3.4 4.6 3.3 2 1 0 2 2 2 0 Double zinc ribbon DUF92 PF01940.16 gi|154151264|ref|YP_001404882.1| - 4.3e-52 176.9 19.6 4.3e-52 176.9 19.6 2.9 2 1 0 2 2 2 1 Integral membrane protein DUF92 Glycophorin_A PF01102.18 gi|154151264|ref|YP_001404882.1| - 1 9.6 3.8 1.5 9.1 2.4 2.0 2 0 0 2 2 2 0 Glycophorin A DUF4538 PF15061.6 gi|154151264|ref|YP_001404882.1| - 7.2 6.4 6.5 3.4 7.5 1.5 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) DUF4728 PF15860.5 gi|154151265|ref|YP_001404883.1| - 0.037 14.7 3.9 0.037 14.7 3.9 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4728) AC_N PF16214.5 gi|154151265|ref|YP_001404883.1| - 0.8 8.8 7.1 1.1 8.3 7.1 1.4 1 0 0 1 1 1 0 Adenylyl cyclase N-terminal extracellular and transmembrane region PK_C PF02887.16 gi|154151266|ref|YP_001404884.1| - 8.9e-15 54.9 1.1 1.3e-14 54.4 1.1 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain AP_endonuc_2 PF01261.24 gi|154151266|ref|YP_001404884.1| - 0.055 12.9 0.1 0.73 9.2 0.1 2.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel RHH_1 PF01402.21 gi|154151266|ref|YP_001404884.1| - 0.33 10.9 3.4 0.14 12.2 0.8 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family MMR_HSR1_C PF08438.10 gi|154151267|ref|YP_001404885.1| - 1.4e-27 96.5 0.1 2.4e-27 95.7 0.1 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|154151267|ref|YP_001404885.1| - 1.9e-21 76.2 0.1 9.5e-21 74.0 0.0 2.1 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|154151267|ref|YP_001404885.1| - 8.4e-12 45.0 0.1 2.5e-11 43.4 0.0 1.8 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.18 gi|154151267|ref|YP_001404885.1| - 8.3e-10 38.4 0.4 4.6e-08 32.7 0.0 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|154151267|ref|YP_001404885.1| - 0.043 14.0 0.1 1.7 8.9 0.0 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF933) GTP_EFTU PF00009.27 gi|154151267|ref|YP_001404885.1| - 0.19 11.2 0.5 5.7 6.4 0.1 2.8 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain Metallophos PF00149.28 gi|154151270|ref|YP_001404888.1| - 1.9e-12 48.1 0.1 3.4e-12 47.3 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|154151270|ref|YP_001404888.1| - 1.5e-09 38.3 0.0 2.3e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain VAPB_antitox PF02697.14 gi|154151271|ref|YP_001404889.1| - 3.8e-07 30.8 0.0 3.9e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Putative antitoxin DUF1995 PF09353.10 gi|154151272|ref|YP_001404890.1| - 0.23 11.5 3.4 0.36 10.8 2.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1995) CTP_transf_like PF01467.26 gi|154151273|ref|YP_001404891.1| - 6.4e-15 55.6 0.0 1e-14 54.9 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase-like AIRC PF00731.20 gi|154151274|ref|YP_001404892.1| - 5.2e-16 58.6 2.5 5.2e-16 58.6 2.5 2.0 2 1 0 2 2 2 1 AIR carboxylase Bclt PF15318.6 gi|154151274|ref|YP_001404892.1| - 0.14 11.9 0.3 0.23 11.3 0.3 1.2 1 0 0 1 1 1 0 Putative Bcl-2 like protein of testis tRNA-synt_His PF13393.6 gi|154151276|ref|YP_001404894.1| - 8.2e-62 209.2 0.1 1.1e-61 208.9 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|154151276|ref|YP_001404894.1| - 1.4e-13 51.2 0.0 2.1e-13 50.7 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|154151276|ref|YP_001404894.1| - 2.2e-12 46.9 0.0 4.8e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.20 gi|154151276|ref|YP_001404894.1| - 0.0031 17.0 0.0 0.006 16.1 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|154151276|ref|YP_001404894.1| - 0.069 12.2 0.6 11 5.0 0.1 2.8 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) Topo-VIb_trans PF09239.11 gi|154151277|ref|YP_001404895.1| - 1.6e-65 219.8 0.0 3.2e-65 218.8 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|154151277|ref|YP_001404895.1| - 1.6e-10 41.5 0.1 6.2e-10 39.6 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|154151277|ref|YP_001404895.1| - 1.8e-07 31.1 0.0 8.7e-07 28.8 0.0 2.2 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Top6b_C PF18000.1 gi|154151277|ref|YP_001404895.1| - 1.9e-06 28.0 0.1 5.2e-06 26.6 0.1 1.7 2 0 0 2 2 2 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain FbpA PF05833.11 gi|154151277|ref|YP_001404895.1| - 0.00013 20.9 0.0 0.00037 19.4 0.0 1.7 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_5 PF14501.6 gi|154151277|ref|YP_001404895.1| - 0.06 13.2 0.0 0.18 11.7 0.0 1.8 1 0 0 1 1 1 0 GHKL domain Ribosomal_S13 PF00416.22 gi|154151277|ref|YP_001404895.1| - 0.064 13.7 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S13/S18 TP6A_N PF04406.14 gi|154151278|ref|YP_001404896.1| - 6.5e-14 51.7 0.0 1.3e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Hexapep PF00132.24 gi|154151280|ref|YP_001404898.1| - 5.5e-18 63.9 27.8 2.5e-07 30.2 7.4 4.7 4 1 2 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|154151280|ref|YP_001404898.1| - 3e-05 23.7 16.4 0.053 13.3 6.3 4.5 3 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|154151280|ref|YP_001404898.1| - 0.11 11.3 3.8 0.43 9.5 0.3 2.6 1 1 0 2 2 2 0 L-fucokinase Hexapep PF00132.24 gi|154151281|ref|YP_001404899.1| - 6.3e-22 76.4 26.1 8.1e-07 28.5 7.3 5.3 5 0 0 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|154151281|ref|YP_001404899.1| - 8.2e-10 38.3 15.6 0.00061 19.5 0.1 5.5 3 2 2 5 5 5 4 Hexapeptide repeat of succinyl-transferase ACPS PF01648.20 gi|154151282|ref|YP_001404900.1| - 3.2e-17 62.7 0.0 3.8e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily PP-binding PF00550.25 gi|154151283|ref|YP_001404901.1| - 1.5e-09 38.0 0.1 3.2e-09 37.0 0.1 1.5 1 1 0 1 1 1 1 Phosphopantetheine attachment site AMP-binding PF00501.28 gi|154151284|ref|YP_001404902.1| - 9.3e-84 281.5 0.0 1.2e-83 281.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|154151284|ref|YP_001404902.1| - 2e-16 60.7 0.0 4.9e-16 59.5 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain SBBP PF06739.11 gi|154151284|ref|YP_001404902.1| - 0.068 13.2 0.3 0.66 10.0 0.0 2.5 2 0 0 2 2 2 0 Beta-propeller repeat LuxE PF04443.12 gi|154151285|ref|YP_001404903.1| - 3.8e-60 203.9 0.0 4.8e-60 203.6 0.0 1.0 1 0 0 1 1 1 1 Acyl-protein synthetase, LuxE AMP-binding PF00501.28 gi|154151285|ref|YP_001404903.1| - 8.8e-05 21.3 0.0 0.00071 18.3 0.0 1.9 1 1 0 1 1 1 1 AMP-binding enzyme LuxC PF05893.14 gi|154151286|ref|YP_001404904.1| - 8e-81 272.1 0.0 9.4e-81 271.9 0.0 1.0 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) adh_short_C2 PF13561.6 gi|154151287|ref|YP_001404905.1| - 1.3e-64 218.0 5.0 1.5e-64 217.8 5.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|154151287|ref|YP_001404905.1| - 1.8e-59 200.5 6.3 2.1e-59 200.3 6.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|154151287|ref|YP_001404905.1| - 4.1e-19 69.2 3.3 5.3e-19 68.8 3.3 1.1 1 0 0 1 1 1 1 KR domain Shugoshin_N PF07558.11 gi|154151287|ref|YP_001404905.1| - 0.0037 17.1 0.4 0.0096 15.8 0.4 1.7 1 0 0 1 1 1 1 Shugoshin N-terminal coiled-coil region THF_DHG_CYH_C PF02882.19 gi|154151287|ref|YP_001404905.1| - 0.0096 15.3 0.6 0.18 11.1 0.2 2.3 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Epimerase PF01370.21 gi|154151287|ref|YP_001404905.1| - 0.04 13.4 0.6 0.088 12.3 0.6 1.6 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.8 gi|154151287|ref|YP_001404905.1| - 0.083 12.7 0.1 0.76 9.6 0.0 2.3 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Glycos_transf_1 PF00534.20 gi|154151288|ref|YP_001404906.1| - 1.3e-34 119.2 0.0 2.1e-34 118.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|154151288|ref|YP_001404906.1| - 1.5e-25 90.2 0.0 3e-25 89.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|154151288|ref|YP_001404906.1| - 5.6e-12 46.0 0.1 9.8e-12 45.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|154151288|ref|YP_001404906.1| - 6e-09 36.5 0.0 1e-08 35.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|154151288|ref|YP_001404906.1| - 7.8e-08 32.6 0.0 1.7e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|154151288|ref|YP_001404906.1| - 0.018 15.1 0.0 0.034 14.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|154151288|ref|YP_001404906.1| - 0.019 14.7 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Starch synthase catalytic domain DUF2101 PF09874.9 gi|154151288|ref|YP_001404906.1| - 0.087 12.5 0.2 0.14 11.9 0.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) Glycos_transf_2 PF00535.26 gi|154151289|ref|YP_001404907.1| - 5.7e-25 88.1 0.0 8.4e-25 87.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|154151289|ref|YP_001404907.1| - 3.9e-08 33.1 0.4 5.4e-08 32.6 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|154151289|ref|YP_001404907.1| - 3e-07 30.6 0.0 4.6e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|154151289|ref|YP_001404907.1| - 0.00051 20.5 0.0 0.0014 19.1 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 CTP_transf_3 PF02348.19 gi|154151289|ref|YP_001404907.1| - 0.099 12.5 0.1 0.19 11.6 0.1 1.5 2 0 0 2 2 2 0 Cytidylyltransferase Glycos_transf_2 PF00535.26 gi|154151290|ref|YP_001404908.1| - 3.2e-22 79.1 0.0 4.7e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|154151290|ref|YP_001404908.1| - 9.6e-20 71.4 0.0 1.3e-19 71.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|154151290|ref|YP_001404908.1| - 3.5e-08 33.6 0.0 4.6e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|154151290|ref|YP_001404908.1| - 6.6e-07 29.0 0.0 1.1e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|154151290|ref|YP_001404908.1| - 1.1e-05 25.1 0.0 1.6e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 GDP_Man_Dehyd PF16363.5 gi|154151291|ref|YP_001404909.1| - 5.3e-92 308.7 0.0 6.1e-92 308.6 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|154151291|ref|YP_001404909.1| - 4.8e-63 212.8 0.0 5.9e-63 212.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|154151291|ref|YP_001404909.1| - 1.8e-12 47.0 0.0 3.3e-12 46.1 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|154151291|ref|YP_001404909.1| - 1e-11 44.6 0.0 2.6e-11 43.2 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|154151291|ref|YP_001404909.1| - 3.1e-11 42.9 0.0 1.1e-08 34.5 0.0 2.6 2 1 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.19 gi|154151291|ref|YP_001404909.1| - 7.4e-11 41.6 0.0 2.3e-10 40.0 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 gi|154151291|ref|YP_001404909.1| - 0.0057 16.1 0.0 0.16 11.4 0.0 2.1 2 0 0 2 2 2 1 short chain dehydrogenase DUF4222 PF13973.6 gi|154151291|ref|YP_001404909.1| - 0.029 14.0 0.6 1.2 8.8 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4222) RmlD_sub_bind PF04321.17 gi|154151292|ref|YP_001404910.1| - 1.3e-85 287.0 0.0 1.4e-85 286.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|154151292|ref|YP_001404910.1| - 6.6e-21 74.9 0.0 8.7e-21 74.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|154151292|ref|YP_001404910.1| - 7.8e-12 45.2 0.4 6.1e-11 42.3 0.0 2.3 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|154151292|ref|YP_001404910.1| - 3.4e-08 33.0 1.9 6.5e-07 28.8 0.1 2.9 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|154151292|ref|YP_001404910.1| - 1.1e-07 31.4 0.0 3e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.19 gi|154151292|ref|YP_001404910.1| - 0.00051 19.1 0.1 0.0027 16.8 0.1 1.9 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 gi|154151292|ref|YP_001404910.1| - 0.012 15.1 0.5 0.043 13.3 0.5 1.9 1 1 0 1 1 1 0 short chain dehydrogenase DapB_N PF01113.20 gi|154151292|ref|YP_001404910.1| - 0.084 13.0 0.1 0.14 12.3 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus dTDP_sugar_isom PF00908.17 gi|154151293|ref|YP_001404911.1| - 3.5e-70 235.1 0.0 3.9e-70 234.9 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase NTP_transferase PF00483.23 gi|154151294|ref|YP_001404912.1| - 1.2e-66 224.8 0.0 1.5e-66 224.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|154151294|ref|YP_001404912.1| - 2.4e-10 41.0 0.0 3.1e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 gi|154151295|ref|YP_001404913.1| - 1.5e-22 80.2 0.0 2.7e-22 79.4 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|154151295|ref|YP_001404913.1| - 1.4e-20 74.2 0.0 2.1e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|154151295|ref|YP_001404913.1| - 3.2e-09 37.0 0.0 7.4e-09 35.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|154151295|ref|YP_001404913.1| - 2.6e-08 33.5 0.0 4.5e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|154151295|ref|YP_001404913.1| - 9.7e-05 22.0 0.0 0.00059 19.4 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_N PF04413.16 gi|154151296|ref|YP_001404914.1| - 0.02 14.6 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Nsp3_PL2pro PF12124.8 gi|154151296|ref|YP_001404914.1| - 0.051 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Coronavirus polyprotein cleavage domain GDP_Man_Dehyd PF16363.5 gi|154151297|ref|YP_001404915.1| - 1.4e-43 149.5 0.0 2.3e-41 142.3 0.0 2.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|154151297|ref|YP_001404915.1| - 9.1e-31 107.2 0.0 1e-30 107.0 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|154151297|ref|YP_001404915.1| - 1.2e-05 24.6 0.0 2.2e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|154151297|ref|YP_001404915.1| - 0.011 14.7 0.0 0.051 12.6 0.0 1.8 2 0 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|154151297|ref|YP_001404915.1| - 0.17 11.0 0.0 0.29 10.2 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Methyltransf_23 PF13489.6 gi|154151298|ref|YP_001404916.1| - 3.7e-08 33.4 0.0 8.2e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154151298|ref|YP_001404916.1| - 2.6e-06 28.0 0.0 7.8e-06 26.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154151298|ref|YP_001404916.1| - 0.00068 20.3 0.0 0.0017 19.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154151298|ref|YP_001404916.1| - 0.0012 18.6 0.1 0.019 14.7 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154151298|ref|YP_001404916.1| - 0.018 15.8 0.0 0.047 14.4 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Glyco_transf_56 PF07429.11 gi|154151298|ref|YP_001404916.1| - 0.02 14.0 0.1 0.031 13.4 0.1 1.2 1 0 0 1 1 1 0 4-alpha-L-fucosyltransferase glycosyl transferase group 56 Methyltransf_14 PF08484.11 gi|154151299|ref|YP_001404917.1| - 7.3e-59 198.1 0.0 1.1e-58 197.6 0.0 1.2 1 0 0 1 1 1 1 C-methyltransferase C-terminal domain Methyltransf_13 PF08421.11 gi|154151299|ref|YP_001404917.1| - 1.2e-17 63.8 0.1 2.3e-17 63.0 0.1 1.5 1 0 0 1 1 1 1 Putative zinc binding domain Methyltransf_23 PF13489.6 gi|154151299|ref|YP_001404917.1| - 1.7e-09 37.7 0.0 2.6e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154151299|ref|YP_001404917.1| - 0.022 15.4 0.0 0.06 14.0 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain DUF4254 PF14063.6 gi|154151300|ref|YP_001404918.1| - 4.5e-09 36.3 1.2 0.00057 19.7 0.3 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF4254) Tropomyosin PF00261.20 gi|154151300|ref|YP_001404918.1| - 0.03 13.7 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 Tropomyosin ABC_tran PF00005.27 gi|154151301|ref|YP_001404919.1| - 1.5e-23 83.9 0.0 3e-23 82.8 0.0 1.6 1 1 0 1 1 1 1 ABC transporter Wzt_C PF14524.6 gi|154151301|ref|YP_001404919.1| - 1.6e-13 50.9 0.0 3.1e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Wzt C-terminal domain AAA_21 PF13304.6 gi|154151301|ref|YP_001404919.1| - 1.3e-05 25.2 1.6 7.2e-05 22.7 0.7 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|154151301|ref|YP_001404919.1| - 0.00039 21.0 0.0 0.00079 20.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|154151301|ref|YP_001404919.1| - 0.00065 19.5 0.0 0.00092 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|154151301|ref|YP_001404919.1| - 0.0012 18.5 0.3 0.0029 17.3 0.1 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|154151301|ref|YP_001404919.1| - 0.023 14.8 0.2 0.055 13.6 0.2 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|154151301|ref|YP_001404919.1| - 0.072 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 gi|154151301|ref|YP_001404919.1| - 0.092 12.2 0.2 0.32 10.4 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|154151301|ref|YP_001404919.1| - 0.094 12.4 0.4 0.28 10.9 0.4 1.9 1 1 0 1 1 1 0 AAA domain DUF2813 PF11398.8 gi|154151301|ref|YP_001404919.1| - 0.15 11.3 0.0 0.22 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) ABC2_membrane PF01061.24 gi|154151302|ref|YP_001404920.1| - 2.8e-24 85.7 32.7 5.2e-24 84.8 25.8 2.0 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|154151302|ref|YP_001404920.1| - 0.36 9.9 33.0 0.063 12.4 25.6 2.1 1 1 0 2 2 2 0 ABC-2 family transporter protein GDP_Man_Dehyd PF16363.5 gi|154151303|ref|YP_001404921.1| - 2.6e-133 444.5 0.0 3.3e-133 444.2 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|154151303|ref|YP_001404921.1| - 2.2e-67 227.0 0.0 2.9e-67 226.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|154151303|ref|YP_001404921.1| - 1.5e-08 34.1 0.0 2e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|154151303|ref|YP_001404921.1| - 0.017 14.7 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family Polysacc_synt_2 PF02719.15 gi|154151303|ref|YP_001404921.1| - 0.018 14.2 0.0 0.041 13.0 0.0 1.5 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein KR PF08659.10 gi|154151303|ref|YP_001404921.1| - 0.19 11.6 0.0 0.44 10.4 0.0 1.7 1 1 0 1 1 1 0 KR domain UDPG_MGDP_dh_N PF03721.14 gi|154151305|ref|YP_001404923.1| - 7.7e-60 201.7 0.0 1.2e-59 201.0 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|154151305|ref|YP_001404923.1| - 2.1e-38 130.4 0.0 4.1e-38 129.5 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|154151305|ref|YP_001404923.1| - 1.3e-25 89.8 0.0 3e-25 88.7 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|154151305|ref|YP_001404923.1| - 1.2e-05 25.8 0.1 0.0098 16.5 0.1 3.8 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|154151305|ref|YP_001404923.1| - 1.2e-05 24.7 0.4 7.4e-05 22.1 0.4 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|154151305|ref|YP_001404923.1| - 2.6e-05 24.7 0.1 5.8e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|154151305|ref|YP_001404923.1| - 0.00061 19.7 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DpaA_N PF16924.5 gi|154151305|ref|YP_001404923.1| - 0.011 15.9 0.1 0.22 11.6 0.0 2.8 3 0 0 3 3 3 0 Dipicolinate synthase subunit A N-terminal domain AlaDh_PNT_C PF01262.21 gi|154151305|ref|YP_001404923.1| - 0.016 14.5 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|154151305|ref|YP_001404923.1| - 0.022 15.0 0.1 0.022 15.0 0.1 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|154151305|ref|YP_001404923.1| - 0.025 13.8 0.1 0.043 13.1 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain TrkA_N PF02254.18 gi|154151305|ref|YP_001404923.1| - 0.034 14.4 0.0 0.098 12.9 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.23 gi|154151305|ref|YP_001404923.1| - 0.037 14.0 0.0 0.075 13.0 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|154151305|ref|YP_001404923.1| - 0.06 13.0 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|154151305|ref|YP_001404923.1| - 0.068 12.7 0.4 0.12 12.0 0.4 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase NTP_transferase PF00483.23 gi|154151306|ref|YP_001404924.1| - 2.4e-25 89.6 0.0 5.4e-25 88.4 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|154151306|ref|YP_001404924.1| - 5.2e-13 49.7 0.0 6.6e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|154151306|ref|YP_001404924.1| - 0.0042 16.9 0.0 0.0075 16.0 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|154151306|ref|YP_001404924.1| - 0.03 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 CTP_transf_3 PF02348.19 gi|154151306|ref|YP_001404924.1| - 0.13 12.2 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Epimerase PF01370.21 gi|154151307|ref|YP_001404925.1| - 1.7e-51 175.1 0.0 2e-51 174.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|154151307|ref|YP_001404925.1| - 5.4e-48 164.1 0.0 6.8e-48 163.8 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|154151307|ref|YP_001404925.1| - 2.1e-12 46.6 0.0 3.9e-12 45.8 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|154151307|ref|YP_001404925.1| - 2.1e-12 46.8 0.0 2e-05 23.9 0.0 2.5 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|154151307|ref|YP_001404925.1| - 5e-10 38.9 0.0 7.6e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|154151307|ref|YP_001404925.1| - 3.2e-09 36.3 0.0 3.6e-06 26.3 0.0 2.3 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|154151307|ref|YP_001404925.1| - 0.00063 19.3 0.0 0.0015 18.1 0.0 1.6 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|154151307|ref|YP_001404925.1| - 0.033 14.1 0.0 0.097 12.6 0.0 1.8 2 0 0 2 2 2 0 KR domain NAD_binding_7 PF13241.6 gi|154151307|ref|YP_001404925.1| - 0.064 13.7 0.0 0.3 11.5 0.0 2.2 2 1 0 2 2 2 0 Putative NAD(P)-binding ELFV_dehydrog PF00208.21 gi|154151307|ref|YP_001404925.1| - 0.084 12.6 0.0 0.65 9.7 0.0 2.0 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Epimerase PF01370.21 gi|154151308|ref|YP_001404926.1| - 2.7e-38 131.8 0.0 4.2e-38 131.2 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|154151308|ref|YP_001404926.1| - 1.5e-30 106.8 0.0 8.3e-30 104.3 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|154151308|ref|YP_001404926.1| - 2e-10 40.3 0.0 1.9e-09 37.1 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|154151308|ref|YP_001404926.1| - 1.2e-08 34.4 0.0 2.7e-07 30.0 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|154151308|ref|YP_001404926.1| - 1.7e-07 30.5 0.0 2.8e-07 29.8 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|154151308|ref|YP_001404926.1| - 1.9e-07 30.5 0.0 2.6e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|154151308|ref|YP_001404926.1| - 0.0037 16.7 0.0 0.0072 15.8 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|154151308|ref|YP_001404926.1| - 0.0052 17.0 0.0 0.0082 16.4 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|154151308|ref|YP_001404926.1| - 0.0056 16.6 0.0 0.062 13.2 0.0 2.4 2 1 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 gi|154151308|ref|YP_001404926.1| - 0.046 13.3 0.0 0.1 12.1 0.0 1.6 2 0 0 2 2 2 0 NmrA-like family Epimerase PF01370.21 gi|154151309|ref|YP_001404927.1| - 8.8e-37 126.9 0.0 1.4e-36 126.2 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|154151309|ref|YP_001404927.1| - 4e-32 111.9 0.0 1.5e-17 64.0 0.0 2.2 2 0 0 2 2 2 2 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|154151309|ref|YP_001404927.1| - 5.2e-08 32.4 0.0 2.5e-06 26.8 0.0 2.2 2 0 0 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.19 gi|154151309|ref|YP_001404927.1| - 2.8e-07 29.8 0.0 4.1e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|154151309|ref|YP_001404927.1| - 3.9e-06 26.2 0.0 0.00064 18.9 0.0 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|154151309|ref|YP_001404927.1| - 9.1e-05 21.7 0.0 0.0012 18.1 0.0 2.3 1 1 0 1 1 1 1 RmlD substrate binding domain Ldh_1_N PF00056.23 gi|154151309|ref|YP_001404927.1| - 0.066 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain LPG_synthase_TM PF03706.13 gi|154151310|ref|YP_001404928.1| - 1e-55 189.4 41.0 1.4e-55 189.0 41.0 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|154151310|ref|YP_001404928.1| - 6.6e-28 97.6 0.0 9.7e-28 97.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|154151310|ref|YP_001404928.1| - 2e-10 41.0 0.0 3.1e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF2300 PF10062.9 gi|154151311|ref|YP_001404929.1| - 0.074 13.1 0.0 0.09 12.9 0.0 1.2 1 0 0 1 1 1 0 Predicted secreted protein (DUF2300) DUF5615 PF18480.1 gi|154151312|ref|YP_001404930.1| - 4.6e-23 80.8 0.0 5.9e-23 80.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_10 PF18478.1 gi|154151312|ref|YP_001404930.1| - 5.7e-05 23.2 0.0 0.0001 22.5 0.0 1.4 1 0 0 1 1 1 1 PIN like domain Mut7-C PF01927.16 gi|154151312|ref|YP_001404930.1| - 0.018 15.1 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain IF-2 PF11987.8 gi|154151312|ref|YP_001404930.1| - 0.078 13.1 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Translation-initiation factor 2 DUF433 PF04255.14 gi|154151313|ref|YP_001404931.1| - 1e-25 89.4 0.0 1.2e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF4258 PF14076.6 gi|154151313|ref|YP_001404931.1| - 0.096 13.1 0.0 0.99 9.8 0.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4258) DUF2300 PF10062.9 gi|154151315|ref|YP_001404933.1| - 0.028 14.5 0.0 0.031 14.4 0.0 1.2 1 0 0 1 1 1 0 Predicted secreted protein (DUF2300) PIN PF01850.21 gi|154151316|ref|YP_001404934.1| - 4.3e-16 59.5 0.0 7.4e-16 58.8 0.0 1.4 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|154151316|ref|YP_001404934.1| - 0.00047 20.7 1.3 0.0037 17.8 0.0 2.3 2 1 0 2 2 2 1 PIN domain PIN_3 PF13470.6 gi|154151316|ref|YP_001404934.1| - 0.00091 20.0 0.1 0.0029 18.3 0.1 2.0 1 1 0 1 1 1 1 PIN domain Pilin_N PF07790.11 gi|154151318|ref|YP_001404936.1| - 2.5e-20 73.2 5.9 2.5e-20 73.2 5.9 1.6 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|154151319|ref|YP_001404937.1| - 2.8e-20 73.0 5.4 2.8e-20 73.0 5.4 1.7 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal ABC2_membrane PF01061.24 gi|154151320|ref|YP_001404938.1| - 5.2e-12 45.6 27.7 9.5e-12 44.8 27.7 1.5 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|154151320|ref|YP_001404938.1| - 0.36 9.9 41.5 0.02 14.0 35.3 1.5 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|154151321|ref|YP_001404939.1| - 2.2e-26 93.0 0.0 3.5e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154151321|ref|YP_001404939.1| - 2.2e-17 63.8 0.2 2.8e-10 40.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|154151321|ref|YP_001404939.1| - 4.6e-07 29.5 0.0 0.0022 17.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|154151321|ref|YP_001404939.1| - 1.4e-06 28.3 0.0 0.02 14.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|154151321|ref|YP_001404939.1| - 0.00024 21.5 0.1 0.0017 18.8 0.1 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|154151321|ref|YP_001404939.1| - 0.00039 21.0 0.3 0.00072 20.1 0.3 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|154151321|ref|YP_001404939.1| - 0.0013 18.4 0.2 0.0022 17.7 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|154151321|ref|YP_001404939.1| - 0.0025 18.1 0.1 0.0055 17.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|154151321|ref|YP_001404939.1| - 0.0041 17.5 0.1 0.0092 16.4 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|154151321|ref|YP_001404939.1| - 0.0051 16.8 0.1 0.051 13.6 0.0 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|154151321|ref|YP_001404939.1| - 0.0089 16.0 0.1 0.018 14.9 0.1 1.5 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.6 gi|154151321|ref|YP_001404939.1| - 0.0095 16.1 0.1 0.024 14.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|154151321|ref|YP_001404939.1| - 0.013 15.4 0.7 0.87 9.5 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.6 gi|154151321|ref|YP_001404939.1| - 0.021 14.5 0.1 0.081 12.6 0.0 1.9 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|154151321|ref|YP_001404939.1| - 0.022 14.4 0.1 0.047 13.3 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|154151321|ref|YP_001404939.1| - 0.023 14.7 0.1 0.046 13.7 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|154151321|ref|YP_001404939.1| - 0.025 14.8 0.2 0.075 13.3 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|154151321|ref|YP_001404939.1| - 0.035 12.8 0.0 0.048 12.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|154151321|ref|YP_001404939.1| - 0.037 13.9 0.1 0.087 12.7 0.1 1.7 1 1 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|154151321|ref|YP_001404939.1| - 0.042 13.4 0.2 0.2 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|154151321|ref|YP_001404939.1| - 0.085 12.6 0.1 0.6 9.8 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|154151321|ref|YP_001404939.1| - 0.1 13.0 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase cobW PF02492.19 gi|154151321|ref|YP_001404939.1| - 0.12 12.0 0.1 0.21 11.1 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Roc PF08477.13 gi|154151321|ref|YP_001404939.1| - 0.13 12.5 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Thymidylate_kin PF02223.17 gi|154151321|ref|YP_001404939.1| - 0.15 11.7 0.2 5.1 6.7 0.1 2.2 2 0 0 2 2 2 0 Thymidylate kinase AAA_18 PF13238.6 gi|154151321|ref|YP_001404939.1| - 0.17 12.5 0.1 0.59 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|154151321|ref|YP_001404939.1| - 0.2 11.4 0.3 0.54 10.0 0.1 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Radical_SAM PF04055.21 gi|154151322|ref|YP_001404940.1| - 6.6e-16 59.1 3.6 9.4e-15 55.4 3.6 2.2 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|154151322|ref|YP_001404940.1| - 0.35 11.1 2.0 1.1 9.5 2.0 1.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF350 PF03994.14 gi|154151323|ref|YP_001404941.1| - 1.7e-18 66.5 21.3 5.6e-10 39.2 3.8 3.4 2 2 1 3 3 3 2 Domain of Unknown Function (DUF350) Brr6_like_C_C PF10104.9 gi|154151323|ref|YP_001404941.1| - 0.02 14.7 4.9 0.31 10.8 0.2 2.6 2 1 0 2 2 2 0 Di-sulfide bridge nucleocytoplasmic transport domain DHHC PF01529.20 gi|154151323|ref|YP_001404941.1| - 0.4 10.8 3.8 14 5.8 3.8 2.2 1 1 0 1 1 1 0 DHHC palmitoyltransferase Trp_oprn_chp PF09534.10 gi|154151323|ref|YP_001404941.1| - 0.47 10.2 16.3 0.53 10.0 1.7 2.5 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) MIG-14_Wnt-bd PF06664.12 gi|154151323|ref|YP_001404941.1| - 0.54 9.4 8.0 0.17 11.1 4.7 1.7 1 1 1 2 2 2 0 Wnt-binding factor required for Wnt secretion DUF2663 PF10864.8 gi|154151323|ref|YP_001404941.1| - 0.58 10.6 2.7 0.72 10.3 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2663) Urate_ox_N PF06181.11 gi|154151323|ref|YP_001404941.1| - 1.7 7.9 9.9 0.25 10.6 3.0 2.0 1 1 1 2 2 2 0 Urate oxidase N-terminal DUF485 PF04341.12 gi|154151323|ref|YP_001404941.1| - 5.5 7.0 11.5 3 7.9 2.8 2.9 2 1 1 3 3 3 0 Protein of unknown function, DUF485 Yip1 PF04893.17 gi|154151323|ref|YP_001404941.1| - 9 6.0 20.5 62 3.2 20.2 2.1 1 1 0 1 1 1 0 Yip1 domain CPSase_L_D2 PF02786.17 gi|154151324|ref|YP_001404942.1| - 1.8e-76 256.3 0.2 2.7e-76 255.7 0.2 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|154151324|ref|YP_001404942.1| - 2.2e-47 160.2 0.2 6.8e-47 158.6 0.1 1.9 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|154151324|ref|YP_001404942.1| - 1.9e-39 134.1 0.0 3.8e-39 133.1 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|154151324|ref|YP_001404942.1| - 9.6e-14 51.4 0.0 2.1e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|154151324|ref|YP_001404942.1| - 8e-06 25.5 0.0 1.4e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|154151324|ref|YP_001404942.1| - 2.7e-05 23.9 0.1 0.00018 21.1 0.1 2.2 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|154151324|ref|YP_001404942.1| - 0.00037 20.6 0.0 0.00069 19.7 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|154151324|ref|YP_001404942.1| - 0.00053 19.8 0.0 0.00091 19.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_Ter PF15632.6 gi|154151324|ref|YP_001404942.1| - 0.057 13.2 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon PYC_OADA PF02436.18 gi|154151325|ref|YP_001404943.1| - 8.9e-56 188.8 0.0 1.6e-55 187.9 0.0 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|154151325|ref|YP_001404943.1| - 5e-44 150.8 0.3 7.6e-44 150.2 0.3 1.3 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|154151325|ref|YP_001404943.1| - 1.3e-17 63.4 5.9 1.7e-17 63.0 2.0 2.7 3 0 0 3 3 3 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|154151325|ref|YP_001404943.1| - 1.8e-12 46.8 1.8 1.1e-06 28.3 0.5 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|154151325|ref|YP_001404943.1| - 5.5e-05 22.5 2.1 0.14 11.4 0.0 2.8 2 1 1 3 3 3 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|154151325|ref|YP_001404943.1| - 6.5e-05 23.6 4.8 0.0049 17.6 0.2 3.4 3 0 0 3 3 3 1 HlyD family secretion protein GCV_H PF01597.19 gi|154151325|ref|YP_001404943.1| - 0.00072 19.4 0.1 0.0016 18.3 0.1 1.6 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|154151325|ref|YP_001404943.1| - 0.0016 18.3 1.3 0.0039 17.1 0.4 2.2 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain NQRA PF05896.11 gi|154151325|ref|YP_001404943.1| - 0.018 14.5 0.2 0.035 13.5 0.2 1.5 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PTS_EIIA_1 PF00358.20 gi|154151325|ref|YP_001404943.1| - 0.066 13.0 0.4 4.6 7.0 0.1 2.6 1 1 2 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CbiQ PF02361.16 gi|154151326|ref|YP_001404944.1| - 2.9e-05 23.8 6.3 0.019 14.6 0.0 2.4 2 1 0 2 2 2 2 Cobalt transport protein TylF PF05711.11 gi|154151326|ref|YP_001404944.1| - 0.13 11.5 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Macrocin-O-methyltransferase (TylF) ABC_tran PF00005.27 gi|154151327|ref|YP_001404945.1| - 6.4e-12 46.2 0.1 3.3e-11 43.8 0.1 1.9 1 1 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|154151327|ref|YP_001404945.1| - 0.0063 16.2 0.1 0.012 15.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|154151327|ref|YP_001404945.1| - 0.0095 15.4 0.0 2 7.8 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|154151327|ref|YP_001404945.1| - 0.056 13.0 0.1 0.14 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.6 gi|154151327|ref|YP_001404945.1| - 0.11 12.3 0.1 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system ATPase PF06745.13 gi|154151327|ref|YP_001404945.1| - 0.16 11.3 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 KaiC ABC_tran PF00005.27 gi|154151328|ref|YP_001404946.1| - 8.3e-19 68.5 0.0 1.1e-18 68.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154151328|ref|YP_001404946.1| - 2.8e-09 37.2 0.3 0.00027 20.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|154151328|ref|YP_001404946.1| - 3.3e-09 36.5 0.0 0.0016 17.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|154151328|ref|YP_001404946.1| - 0.00021 21.2 0.0 0.00029 20.7 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|154151328|ref|YP_001404946.1| - 0.00039 21.0 0.1 0.00056 20.5 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|154151328|ref|YP_001404946.1| - 0.0012 18.5 0.1 0.0023 17.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|154151328|ref|YP_001404946.1| - 0.0062 16.9 0.0 0.019 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|154151328|ref|YP_001404946.1| - 0.0065 16.7 0.1 0.024 14.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|154151328|ref|YP_001404946.1| - 0.023 14.9 0.1 0.11 12.7 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BioY PF02632.14 gi|154151329|ref|YP_001404947.1| - 1.3e-31 109.4 21.7 1.9e-31 108.9 21.7 1.2 1 0 0 1 1 1 1 BioY family DUF5392 PF17370.2 gi|154151329|ref|YP_001404947.1| - 0.052 13.6 0.3 0.094 12.8 0.3 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5392) DUF872 PF05915.12 gi|154151329|ref|YP_001404947.1| - 4.8 7.4 8.1 0.3 11.3 2.0 2.0 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) BPL_LplA_LipB PF03099.19 gi|154151330|ref|YP_001404948.1| - 2.2e-14 53.5 0.0 4.1e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|154151330|ref|YP_001404948.1| - 3.5e-14 52.5 0.0 1e-13 51.0 0.0 1.8 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|154151330|ref|YP_001404948.1| - 2.5e-09 36.9 0.1 5.8e-09 35.7 0.1 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.6 gi|154151330|ref|YP_001404948.1| - 4.6e-05 22.9 0.0 8.7e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|154151330|ref|YP_001404948.1| - 0.0075 16.2 0.0 1.4 9.0 0.0 3.1 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain BPL_LplA_LipB_2 PF16917.5 gi|154151330|ref|YP_001404948.1| - 0.037 13.6 0.0 0.048 13.2 0.0 1.2 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family Fe_dep_repress PF01325.19 gi|154151330|ref|YP_001404948.1| - 0.049 13.8 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|154151330|ref|YP_001404948.1| - 0.053 13.9 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Prefoldin_3 PF13758.6 gi|154151330|ref|YP_001404948.1| - 0.091 12.8 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Prefoldin subunit HTH_39 PF14090.6 gi|154151330|ref|YP_001404948.1| - 0.095 12.5 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|154151330|ref|YP_001404948.1| - 0.1 12.5 0.0 0.39 10.6 0.0 2.0 2 0 0 2 2 2 0 MarR family DUF2111 PF09884.9 gi|154151331|ref|YP_001404949.1| - 3e-38 129.8 1.7 3.9e-38 129.4 1.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) PAS_4 PF08448.10 gi|154151331|ref|YP_001404949.1| - 0.048 13.9 0.0 0.079 13.2 0.0 1.4 1 0 0 1 1 1 0 PAS fold Attachment_P66 PF11263.8 gi|154151331|ref|YP_001404949.1| - 0.2 10.9 0.0 0.25 10.6 0.0 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi attachment protein P66 BPL_N PF09825.9 gi|154151332|ref|YP_001404950.1| - 0.0024 17.0 0.2 0.021 13.9 0.1 1.9 2 0 0 2 2 2 2 Biotin-protein ligase, N terminal RtcB PF01139.17 gi|154151333|ref|YP_001404951.1| - 3.1e-156 520.7 0.0 3.6e-156 520.5 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.16 gi|154151334|ref|YP_001404952.1| - 6.3e-34 117.2 0.0 7e-34 117.0 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) zf_C2H2_13 PF18508.1 gi|154151335|ref|YP_001404953.1| - 0.0016 17.9 0.5 0.0026 17.3 0.5 1.2 1 0 0 1 1 1 1 Zinc finger domain DUF2551 PF10826.8 gi|154151336|ref|YP_001404954.1| - 5.1e-31 106.7 0.4 6.2e-31 106.5 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.16 gi|154151336|ref|YP_001404954.1| - 0.025 15.0 0.0 0.034 14.5 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor SecD_SecF PF02355.16 gi|154151337|ref|YP_001404955.1| - 3.9e-33 114.4 15.1 6.6e-33 113.7 15.1 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|154151337|ref|YP_001404955.1| - 0.011 15.2 0.0 0.027 14.0 0.0 1.7 1 0 0 1 1 1 0 SecD/SecF GG Motif Patched PF02460.18 gi|154151337|ref|YP_001404955.1| - 1 7.3 12.8 1.5 6.8 12.8 1.2 1 0 0 1 1 1 0 Patched family Fig1 PF12351.8 gi|154151337|ref|YP_001404955.1| - 2.7 7.9 17.0 3.8 7.4 0.4 3.1 3 0 0 3 3 3 0 Ca2+ regulator and membrane fusion protein Fig1 SecD_SecF PF02355.16 gi|154151338|ref|YP_001404956.1| - 2.3e-15 56.5 12.4 5.5e-15 55.2 12.4 1.5 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|154151338|ref|YP_001404956.1| - 4e-06 26.0 12.3 7.6e-06 25.1 12.3 1.5 1 0 0 1 1 1 1 MMPL family DUF4947 PF16305.5 gi|154151338|ref|YP_001404956.1| - 0.012 15.6 0.2 0.025 14.6 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4947) Thioredoxin PF00085.20 gi|154151339|ref|YP_001404957.1| - 5.4e-25 87.4 0.0 5.7e-25 87.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|154151339|ref|YP_001404957.1| - 2.5e-11 44.0 0.6 3.1e-10 40.5 0.6 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|154151339|ref|YP_001404957.1| - 3.9e-07 30.3 0.0 0.00035 20.8 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|154151339|ref|YP_001404957.1| - 9.2e-07 28.8 0.1 1.1e-06 28.6 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin domain Redoxin PF08534.10 gi|154151339|ref|YP_001404957.1| - 3e-06 27.0 0.3 0.0026 17.5 0.1 2.1 1 1 1 2 2 2 2 Redoxin HyaE PF07449.11 gi|154151339|ref|YP_001404957.1| - 2e-05 24.5 0.0 2.3e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_9 PF14595.6 gi|154151339|ref|YP_001404957.1| - 5.7e-05 22.9 0.0 6.9e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin KaiB PF07689.12 gi|154151339|ref|YP_001404957.1| - 0.00016 21.4 0.1 0.00018 21.2 0.1 1.2 1 0 0 1 1 1 1 KaiB domain TraF PF13728.6 gi|154151339|ref|YP_001404957.1| - 0.00016 21.6 0.0 0.00019 21.3 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Glutaredoxin PF00462.24 gi|154151339|ref|YP_001404957.1| - 0.00024 21.2 0.1 0.00036 20.7 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin DSBA PF01323.20 gi|154151339|ref|YP_001404957.1| - 0.00042 20.2 0.0 0.0034 17.2 0.0 1.8 1 1 1 2 2 2 1 DSBA-like thioredoxin domain AhpC-TSA PF00578.21 gi|154151339|ref|YP_001404957.1| - 0.00055 19.9 0.3 0.13 12.2 0.1 2.0 1 1 1 2 2 2 2 AhpC/TSA family DUF836 PF05768.14 gi|154151339|ref|YP_001404957.1| - 0.00092 19.6 0.0 0.0011 19.4 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_4 PF13462.6 gi|154151339|ref|YP_001404957.1| - 0.015 15.5 0.0 0.015 15.5 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin TrbC_Ftype PF09673.10 gi|154151339|ref|YP_001404957.1| - 0.082 13.0 0.0 0.097 12.7 0.0 1.1 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein Thioredoxin_7 PF13899.6 gi|154151339|ref|YP_001404957.1| - 0.13 12.4 0.1 0.27 11.4 0.1 1.6 1 1 0 1 1 1 0 Thioredoxin-like DUF953 PF06110.11 gi|154151339|ref|YP_001404957.1| - 0.18 11.4 0.4 0.68 9.6 0.4 1.8 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) F420_oxidored PF03807.17 gi|154151340|ref|YP_001404958.1| - 7.4e-17 61.7 0.0 1.4e-16 60.8 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|154151340|ref|YP_001404958.1| - 0.00065 20.1 0.1 0.0011 19.4 0.1 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain PDH PF02153.17 gi|154151340|ref|YP_001404958.1| - 0.0076 15.3 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.15 gi|154151340|ref|YP_001404958.1| - 0.022 14.9 0.0 0.074 13.2 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|154151340|ref|YP_001404958.1| - 0.088 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HhH-GPD PF00730.25 gi|154151341|ref|YP_001404959.1| - 2.1e-11 44.2 0.0 2.9e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.6 gi|154151341|ref|YP_001404959.1| - 7.7e-06 26.4 0.3 0.0071 16.9 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.23 gi|154151341|ref|YP_001404959.1| - 0.00029 20.6 0.5 0.00081 19.1 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif POTRA_TamA_1 PF17243.2 gi|154151341|ref|YP_001404959.1| - 0.07 13.2 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 POTRA domain TamA domain 1 Aldolase_II PF00596.21 gi|154151342|ref|YP_001404960.1| - 5.3e-32 111.3 0.0 6.4e-32 111.0 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Glycos_transf_2 PF00535.26 gi|154151343|ref|YP_001404961.1| - 6.5e-15 55.3 0.0 1.2e-14 54.4 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|154151343|ref|YP_001404961.1| - 2.5e-05 24.3 0.0 3.4e-05 23.8 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|154151343|ref|YP_001404961.1| - 0.012 16.1 0.0 0.022 15.2 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase family 2 HTH_39 PF14090.6 gi|154151343|ref|YP_001404961.1| - 0.12 12.1 0.1 0.61 9.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF99 PF01949.16 gi|154151344|ref|YP_001404962.1| - 3.7e-64 215.5 0.0 4.4e-64 215.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Rubredoxin PF00301.20 gi|154151345|ref|YP_001404963.1| - 9e-20 70.4 4.0 1.1e-19 70.1 4.0 1.1 1 0 0 1 1 1 1 Rubredoxin Vps36-NZF-N PF16988.5 gi|154151345|ref|YP_001404963.1| - 6.4e-05 22.3 0.3 0.0091 15.4 0.1 2.2 2 0 0 2 2 2 2 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-Sec23_Sec24 PF04810.15 gi|154151345|ref|YP_001404963.1| - 0.0045 17.0 1.5 0.12 12.4 0.1 2.2 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger PHD PF00628.29 gi|154151345|ref|YP_001404963.1| - 0.013 15.3 1.6 2.3 8.2 0.0 2.1 2 0 0 2 2 2 0 PHD-finger zf-MIZ PF02891.20 gi|154151345|ref|YP_001404963.1| - 0.02 14.6 4.2 0.2 11.5 0.4 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger zf-UBP PF02148.19 gi|154151345|ref|YP_001404963.1| - 0.063 13.6 0.3 0.56 10.6 0.0 2.0 2 0 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zinc_ribbon_10 PF10058.9 gi|154151345|ref|YP_001404963.1| - 0.13 12.0 1.4 7.3 6.4 0.2 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-RanBP PF00641.18 gi|154151345|ref|YP_001404963.1| - 0.24 10.8 3.4 1.5 8.2 0.2 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others ADK_lid PF05191.14 gi|154151345|ref|YP_001404963.1| - 0.38 10.8 2.9 2.1 8.4 3.0 1.9 1 1 0 1 1 1 0 Adenylate kinase, active site lid VATC PF18716.1 gi|154151345|ref|YP_001404963.1| - 0.44 10.4 3.1 1.6 8.6 0.2 2.2 1 1 1 2 2 2 0 Vms1-associating treble clef domain HisKA_2 PF07568.12 gi|154151347|ref|YP_001404965.1| - 1.1e-27 95.9 1.7 3.6e-27 94.2 1.7 2.0 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.7 gi|154151347|ref|YP_001404965.1| - 6.4e-27 93.8 0.0 1.5e-07 31.6 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|154151347|ref|YP_001404965.1| - 2.6e-18 66.1 0.0 5.9e-06 26.3 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|154151347|ref|YP_001404965.1| - 2e-17 63.4 0.0 1.4e-06 28.5 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|154151347|ref|YP_001404965.1| - 2.8e-17 62.8 1.0 7.3e-14 51.8 0.0 4.1 4 1 0 4 4 4 1 PAS fold PAS_8 PF13188.7 gi|154151347|ref|YP_001404965.1| - 5.5e-14 51.8 0.0 0.0035 17.3 0.0 3.5 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|154151347|ref|YP_001404965.1| - 5.1e-07 30.2 0.0 1.9e-06 28.4 0.0 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|154151347|ref|YP_001404965.1| - 0.00015 22.4 0.2 0.00042 21.0 0.2 1.8 1 0 0 1 1 1 1 HWE histidine kinase SPOB_a PF14689.6 gi|154151347|ref|YP_001404965.1| - 0.011 15.5 2.1 0.042 13.6 0.4 2.5 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.6 gi|154151347|ref|YP_001404965.1| - 0.014 15.4 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain dCache_1 PF02743.18 gi|154151347|ref|YP_001404965.1| - 0.014 15.2 0.0 0.093 12.5 0.0 2.2 1 1 1 2 2 2 0 Cache domain Hemagglutinin PF00509.18 gi|154151347|ref|YP_001404965.1| - 0.016 13.6 0.0 0.027 12.9 0.0 1.2 1 0 0 1 1 1 0 Haemagglutinin DUF3196 PF11428.8 gi|154151347|ref|YP_001404965.1| - 0.025 14.1 1.0 0.041 13.4 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3196) DUF4118 PF13493.6 gi|154151347|ref|YP_001404965.1| - 4.4 7.2 12.1 8.1 6.3 12.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) Response_reg PF00072.24 gi|154151348|ref|YP_001404966.1| - 1.1e-23 83.5 0.6 2e-23 82.7 0.2 1.7 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.25 gi|154151348|ref|YP_001404966.1| - 1.5e-07 31.4 0.0 7.8e-07 29.1 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|154151348|ref|YP_001404966.1| - 1.9e-06 28.1 0.0 3.4e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|154151348|ref|YP_001404966.1| - 0.0014 18.6 0.0 0.0027 17.7 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|154151348|ref|YP_001404966.1| - 0.0044 17.3 0.0 0.0087 16.3 0.0 1.5 1 0 0 1 1 1 1 PAS fold FleQ PF06490.11 gi|154151348|ref|YP_001404966.1| - 0.16 12.3 0.0 0.26 11.7 0.0 1.3 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ PAS PF00989.25 gi|154151349|ref|YP_001404967.1| - 1.4e-42 144.2 0.0 3.7e-17 62.3 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|154151349|ref|YP_001404967.1| - 2e-32 111.7 0.0 2.1e-12 47.3 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|154151349|ref|YP_001404967.1| - 3.8e-26 91.3 0.0 3e-11 43.5 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|154151349|ref|YP_001404967.1| - 2.1e-24 85.6 0.0 1.2e-11 44.7 0.0 3.6 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|154151349|ref|YP_001404967.1| - 8.9e-22 77.4 0.0 2e-21 76.2 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|154151349|ref|YP_001404967.1| - 2.2e-17 62.6 0.2 2.3e-07 30.6 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS_7 PF12860.7 gi|154151349|ref|YP_001404967.1| - 6e-06 26.4 0.8 0.035 14.3 0.0 4.9 4 2 0 4 4 4 1 PAS fold PAS_10 PF13596.6 gi|154151349|ref|YP_001404967.1| - 0.013 16.0 0.0 1 10.0 0.0 2.8 3 0 0 3 3 3 0 PAS domain PAS_12 PF18095.1 gi|154151349|ref|YP_001404967.1| - 0.023 14.3 0.0 2.1 8.0 0.0 3.3 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain HisKA PF00512.25 gi|154151349|ref|YP_001404967.1| - 0.063 13.3 0.2 0.063 13.3 0.2 3.4 4 1 0 4 4 4 0 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|154151350|ref|YP_001404968.1| - 1.6e-29 102.4 0.0 3.8e-12 46.4 0.1 4.7 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|154151350|ref|YP_001404968.1| - 1.7e-26 92.5 0.0 5.2e-10 39.5 0.0 4.8 4 0 0 4 4 4 3 PAS domain PAS_8 PF13188.7 gi|154151350|ref|YP_001404968.1| - 4.1e-19 68.2 0.8 2.4e-06 27.4 0.0 5.0 5 0 0 5 5 4 3 PAS domain PAS PF00989.25 gi|154151350|ref|YP_001404968.1| - 2.7e-17 62.8 0.0 0.00041 20.3 0.0 5.2 5 0 0 5 5 5 3 PAS fold PAS_3 PF08447.12 gi|154151350|ref|YP_001404968.1| - 1e-09 38.6 1.5 0.00029 21.1 0.0 4.3 5 0 0 5 5 3 1 PAS fold PAS_10 PF13596.6 gi|154151350|ref|YP_001404968.1| - 6.3e-05 23.5 0.0 0.33 11.5 0.0 3.2 3 0 0 3 3 2 2 PAS domain YcbB PF08664.10 gi|154151350|ref|YP_001404968.1| - 0.0017 18.4 2.1 0.072 13.1 0.2 2.5 2 0 0 2 2 2 1 YcbB domain DUF812 PF05667.11 gi|154151350|ref|YP_001404968.1| - 0.0029 16.6 0.9 0.6 8.9 0.1 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF812) APG6_N PF17675.1 gi|154151350|ref|YP_001404968.1| - 0.0051 17.3 1.8 0.0051 17.3 1.8 3.0 3 0 0 3 3 3 1 Apg6 coiled-coil region DUF3552 PF12072.8 gi|154151350|ref|YP_001404968.1| - 0.0072 15.8 21.7 0.093 12.1 9.5 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF3552) Spc7 PF08317.11 gi|154151350|ref|YP_001404968.1| - 0.014 14.3 13.1 0.29 10.0 4.8 2.4 2 0 0 2 2 2 0 Spc7 kinetochore protein PAS_7 PF12860.7 gi|154151350|ref|YP_001404968.1| - 0.018 15.2 2.0 7.7 6.7 0.0 4.5 3 3 1 4 4 4 0 PAS fold Scaffolding_pro PF11418.8 gi|154151350|ref|YP_001404968.1| - 0.025 15.1 4.6 0.41 11.2 0.4 2.4 2 0 0 2 2 2 0 Phi29 scaffolding protein Macoilin PF09726.9 gi|154151350|ref|YP_001404968.1| - 0.034 12.7 0.2 0.034 12.7 0.2 2.1 2 0 0 2 2 2 0 Macoilin family Exonuc_VII_L PF02601.15 gi|154151350|ref|YP_001404968.1| - 0.054 13.0 0.9 2.4 7.7 0.1 2.2 2 0 0 2 2 2 0 Exonuclease VII, large subunit sCache_3_3 PF17202.4 gi|154151350|ref|YP_001404968.1| - 0.055 13.9 0.0 0.19 12.2 0.0 1.9 2 0 0 2 2 1 0 Single cache domain 3 SHE3 PF17078.5 gi|154151350|ref|YP_001404968.1| - 0.056 13.1 10.9 0.1 12.3 3.6 2.3 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 FTA4 PF13093.6 gi|154151350|ref|YP_001404968.1| - 0.061 13.2 1.8 8.3 6.2 0.1 2.5 3 0 0 3 3 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 PEP-utilisers_N PF05524.13 gi|154151350|ref|YP_001404968.1| - 0.091 12.9 8.3 1.3 9.2 0.0 3.8 4 0 0 4 4 3 0 PEP-utilising enzyme, N-terminal CENP-Q PF13094.6 gi|154151350|ref|YP_001404968.1| - 0.093 12.9 10.3 0.32 11.2 0.1 3.3 3 0 0 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit ALIX_LYPXL_bnd PF13949.6 gi|154151350|ref|YP_001404968.1| - 0.23 10.7 8.7 1.3 8.3 0.3 2.8 3 0 0 3 3 3 0 ALIX V-shaped domain binding to HIV OmpH PF03938.14 gi|154151350|ref|YP_001404968.1| - 0.24 11.7 20.5 1.4 9.2 8.3 3.4 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) 4HB_MCP_1 PF12729.7 gi|154151350|ref|YP_001404968.1| - 0.43 10.1 9.0 0.36 10.4 0.5 3.5 3 0 0 3 3 3 0 Four helix bundle sensory module for signal transduction YabA PF06156.13 gi|154151350|ref|YP_001404968.1| - 0.76 10.4 9.4 1 10.0 1.1 3.2 3 0 0 3 3 3 0 Initiation control protein YabA DUF2959 PF11172.8 gi|154151350|ref|YP_001404968.1| - 1 9.4 12.9 16 5.6 1.9 4.5 5 0 0 5 5 5 0 Protein of unknown function (DUF2959) Syntaxin-6_N PF09177.11 gi|154151350|ref|YP_001404968.1| - 1.1 9.8 7.0 4 8.0 1.3 2.7 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Spc24 PF08286.11 gi|154151350|ref|YP_001404968.1| - 1.2 9.4 8.0 1.7 8.9 1.2 2.5 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 MbeB_N PF04837.12 gi|154151350|ref|YP_001404968.1| - 1.5 9.2 7.7 1.1 9.6 2.7 2.8 2 0 0 2 2 2 0 MbeB-like, N-term conserved region HALZ PF02183.18 gi|154151350|ref|YP_001404968.1| - 1.6 9.0 10.2 2.2 8.6 0.6 3.3 2 2 1 3 3 3 0 Homeobox associated leucine zipper TBCA PF02970.16 gi|154151350|ref|YP_001404968.1| - 2 8.8 14.5 0.16 12.3 5.1 3.2 3 0 0 3 3 3 0 Tubulin binding cofactor A UPF0449 PF15136.6 gi|154151350|ref|YP_001404968.1| - 2.2 8.8 10.6 1.2 9.6 1.0 2.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 HAUS6_N PF14661.6 gi|154151350|ref|YP_001404968.1| - 2.2 7.8 5.8 2.2 7.8 0.6 2.3 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DnaJ PF00226.31 gi|154151350|ref|YP_001404968.1| - 2.2 8.5 6.5 3.7 7.8 1.1 3.1 3 0 0 3 3 2 0 DnaJ domain FapA PF03961.13 gi|154151350|ref|YP_001404968.1| - 2.2 6.8 3.8 16 4.0 0.0 2.1 2 0 0 2 2 2 0 Flagellar Assembly Protein A YfhO PF09586.10 gi|154151350|ref|YP_001404968.1| - 2.7 6.1 7.4 1.1 7.4 4.9 1.4 1 1 0 1 1 1 0 Bacterial membrane protein YfhO JIP_LZII PF16471.5 gi|154151350|ref|YP_001404968.1| - 5.2 7.3 10.1 3.3 8.0 2.2 2.5 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II DUF3450 PF11932.8 gi|154151350|ref|YP_001404968.1| - 6.5 6.0 14.4 0.24 10.7 2.3 2.5 3 0 0 3 3 2 0 Protein of unknown function (DUF3450) AAA_23 PF13476.6 gi|154151350|ref|YP_001404968.1| - 6.6 7.2 8.1 5.5 7.4 0.5 2.6 3 0 0 3 3 2 0 AAA domain ADIP PF11559.8 gi|154151350|ref|YP_001404968.1| - 7.2 6.7 17.7 4.5 7.4 2.0 2.6 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF3391 PF11871.8 gi|154151350|ref|YP_001404968.1| - 7.9 7.0 10.7 5.3 7.6 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3391) DUF4686 PF15742.5 gi|154151350|ref|YP_001404968.1| - 9.4 5.3 16.9 1.6 7.8 4.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4686) 5_nucleotid PF05761.14 gi|154151350|ref|YP_001404968.1| - 9.7 5.0 6.3 14 4.5 0.2 2.9 2 1 1 3 3 3 0 5' nucleotidase family HATPase_c PF02518.26 gi|154151351|ref|YP_001404969.1| - 4.1e-24 85.2 0.1 7.7e-24 84.4 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|154151351|ref|YP_001404969.1| - 2.7e-21 75.9 0.0 5.1e-13 49.2 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|154151351|ref|YP_001404969.1| - 3.9e-15 56.0 0.0 5.3e-07 29.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|154151351|ref|YP_001404969.1| - 9.8e-11 41.5 0.2 9.8e-11 41.5 0.2 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|154151351|ref|YP_001404969.1| - 6.9e-10 38.9 0.0 0.00018 21.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c_5 PF14501.6 gi|154151351|ref|YP_001404969.1| - 1.6e-05 24.8 0.0 3.4e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 gi|154151351|ref|YP_001404969.1| - 4.2e-05 23.5 0.0 0.069 13.2 0.0 3.1 3 0 0 3 3 3 2 PAS domain HATPase_c_3 PF13589.6 gi|154151351|ref|YP_001404969.1| - 0.0057 16.5 0.0 0.016 15.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|154151351|ref|YP_001404969.1| - 0.016 15.5 0.0 10 6.5 0.0 2.8 2 0 0 2 2 2 0 PAS fold APG6_N PF17675.1 gi|154151351|ref|YP_001404969.1| - 8.1 7.0 9.3 0.1 13.1 0.9 2.1 3 0 0 3 3 3 0 Apg6 coiled-coil region CCDC-167 PF15188.6 gi|154151351|ref|YP_001404969.1| - 8.3 6.8 7.0 59 4.1 0.3 3.3 3 0 0 3 3 3 0 Coiled-coil domain-containing protein 167 Response_reg PF00072.24 gi|154151352|ref|YP_001404970.1| - 1.5e-21 76.6 0.0 2e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|154151353|ref|YP_001404971.1| - 8.9e-91 299.5 0.0 1.9e-20 73.1 0.0 8.8 8 1 1 9 9 9 8 PAS fold PAS PF00989.25 gi|154151353|ref|YP_001404971.1| - 1.5e-88 292.4 0.0 1.2e-13 51.0 0.0 8.4 8 0 0 8 8 8 8 PAS fold PAS_9 PF13426.7 gi|154151353|ref|YP_001404971.1| - 5.4e-81 267.6 0.0 2.3e-14 53.5 0.0 8.5 8 0 0 8 8 8 8 PAS domain PAS_3 PF08447.12 gi|154151353|ref|YP_001404971.1| - 7e-62 205.7 0.0 3.7e-14 52.8 0.0 9.0 8 0 0 8 8 8 7 PAS fold PAS_8 PF13188.7 gi|154151353|ref|YP_001404971.1| - 1.8e-43 145.9 0.1 5.2e-07 29.5 0.0 9.2 8 1 1 9 9 9 7 PAS domain HisKA_2 PF07568.12 gi|154151353|ref|YP_001404971.1| - 2.4e-27 94.8 1.6 2.4e-27 94.8 1.6 3.3 4 0 0 4 4 3 1 Histidine kinase PAS_11 PF14598.6 gi|154151353|ref|YP_001404971.1| - 1.1e-10 41.6 0.0 0.00014 22.0 0.0 5.1 6 0 0 6 6 5 2 PAS domain PAS_10 PF13596.6 gi|154151353|ref|YP_001404971.1| - 1.3e-10 41.8 0.0 0.00043 20.8 0.0 4.9 5 0 0 5 5 4 2 PAS domain Response_reg PF00072.24 gi|154151353|ref|YP_001404971.1| - 2.7e-10 40.4 0.0 7.5e-10 39.0 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_7 PF12860.7 gi|154151353|ref|YP_001404971.1| - 1.3e-08 35.0 0.8 0.03 14.5 0.0 7.3 9 1 0 9 9 9 2 PAS fold HATPase_c PF02518.26 gi|154151353|ref|YP_001404971.1| - 3.8e-08 33.8 0.4 2.2e-07 31.4 0.4 2.3 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase sCache_3_3 PF17202.4 gi|154151353|ref|YP_001404971.1| - 6.7e-06 26.5 0.0 0.58 10.6 0.0 3.9 4 0 0 4 4 3 2 Single cache domain 3 HWE_HK PF07536.14 gi|154151353|ref|YP_001404971.1| - 3.4e-05 24.5 0.1 0.00013 22.6 0.1 2.1 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|154151353|ref|YP_001404971.1| - 0.00011 22.2 0.0 0.00025 21.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Cache_3-Cache_2 PF17201.4 gi|154151353|ref|YP_001404971.1| - 0.015 14.6 0.0 2 7.6 0.0 3.1 3 0 0 3 3 3 0 Cache 3/Cache 2 fusion domain Response_reg PF00072.24 gi|154151354|ref|YP_001404972.1| - 1.3e-23 83.2 0.0 1.9e-23 82.8 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|154151355|ref|YP_001404973.1| - 7.6e-15 55.1 0.0 8.7e-15 54.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.11 gi|154151355|ref|YP_001404973.1| - 0.023 15.1 0.0 0.029 14.7 0.0 1.2 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ NDUFV3 PF15880.5 gi|154151355|ref|YP_001404973.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial HMGL-like PF00682.19 gi|154151356|ref|YP_001404974.1| - 9e-84 281.1 2.7 9e-84 281.1 2.7 1.8 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|154151356|ref|YP_001404974.1| - 1.2e-30 106.2 1.4 2.1e-30 105.3 1.4 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain RXT2_N PF08595.11 gi|154151357|ref|YP_001404975.1| - 0.00096 19.2 0.1 0.00096 19.2 0.1 1.3 1 0 0 1 1 1 1 RXT2-like, N-terminal DUF3169 PF11368.8 gi|154151357|ref|YP_001404975.1| - 0.0013 18.3 0.1 0.0021 17.6 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3169) NOA36 PF06524.12 gi|154151357|ref|YP_001404975.1| - 0.003 17.0 8.8 0.0035 16.7 8.8 1.1 1 0 0 1 1 1 1 NOA36 protein Cyt_c_ox_IV PF12270.8 gi|154151357|ref|YP_001404975.1| - 0.0032 17.6 0.1 0.0043 17.2 0.1 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit IV CDC45 PF02724.14 gi|154151357|ref|YP_001404975.1| - 0.0035 15.7 6.7 0.0036 15.7 6.7 1.2 1 0 0 1 1 1 1 CDC45-like protein Pes-10 PF07149.11 gi|154151357|ref|YP_001404975.1| - 0.0051 15.9 5.2 0.0051 15.9 5.2 1.1 1 0 0 1 1 1 1 Pes-10 Otopetrin PF03189.13 gi|154151357|ref|YP_001404975.1| - 0.0068 15.3 0.0 0.0078 15.1 0.0 1.0 1 0 0 1 1 1 1 Otopetrin DUF1772 PF08592.11 gi|154151357|ref|YP_001404975.1| - 0.022 15.1 0.0 0.038 14.3 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) CobT PF06213.12 gi|154151357|ref|YP_001404975.1| - 0.036 13.5 14.6 0.041 13.3 14.6 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT RNA_pol_Rpc4 PF05132.14 gi|154151357|ref|YP_001404975.1| - 0.05 14.0 0.9 0.05 14.0 0.9 1.1 1 0 0 1 1 1 0 RNA polymerase III RPC4 Serinc PF03348.15 gi|154151357|ref|YP_001404975.1| - 0.052 12.5 0.0 0.062 12.2 0.0 1.2 1 0 0 1 1 1 0 Serine incorporator (Serinc) RPA43_OB PF17875.1 gi|154151357|ref|YP_001404975.1| - 0.052 14.2 1.0 0.068 13.8 1.0 1.2 1 0 0 1 1 1 0 RPA43 OB domain in RNA Pol I Connexin PF00029.19 gi|154151357|ref|YP_001404975.1| - 0.061 13.1 1.4 0.079 12.7 1.4 1.2 1 0 0 1 1 1 0 Connexin V_ATPase_I PF01496.19 gi|154151357|ref|YP_001404975.1| - 0.081 10.8 0.0 0.081 10.8 0.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family EIIBC-GUT_N PF03612.14 gi|154151357|ref|YP_001404975.1| - 0.1 12.3 0.6 0.12 12.1 0.6 1.1 1 0 0 1 1 1 0 Sorbitol phosphotransferase enzyme II N-terminus S_4TM PF18159.1 gi|154151357|ref|YP_001404975.1| - 0.11 11.8 0.1 0.13 11.5 0.1 1.1 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain FHIPEP PF00771.20 gi|154151357|ref|YP_001404975.1| - 0.11 10.9 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 FHIPEP family MMM1 PF10296.9 gi|154151357|ref|YP_001404975.1| - 0.13 11.3 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Maintenance of mitochondrial morphology protein 1 CENP-B_dimeris PF09026.10 gi|154151357|ref|YP_001404975.1| - 0.15 12.4 17.2 0.23 11.8 17.2 1.4 1 0 0 1 1 1 0 Centromere protein B dimerisation domain Sigma70_ner PF04546.13 gi|154151357|ref|YP_001404975.1| - 0.21 11.4 12.9 0.26 11.1 12.9 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region SpoIIIAH PF12685.7 gi|154151357|ref|YP_001404975.1| - 0.31 10.8 9.6 0.035 13.9 5.6 1.4 2 0 0 2 2 1 0 SpoIIIAH-like protein Sporozoite_P67 PF05642.11 gi|154151357|ref|YP_001404975.1| - 0.34 8.9 9.1 0.4 8.7 9.1 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen Phage_holin_3_6 PF07332.11 gi|154151357|ref|YP_001404975.1| - 0.45 10.6 4.8 0.65 10.0 4.8 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DNA_pol_phi PF04931.13 gi|154151357|ref|YP_001404975.1| - 0.47 8.5 19.7 0.56 8.2 19.7 1.1 1 0 0 1 1 1 0 DNA polymerase phi PTPRCAP PF15713.5 gi|154151357|ref|YP_001404975.1| - 0.49 10.7 15.2 0.57 10.5 15.2 1.1 1 0 0 1 1 1 0 Protein tyrosine phosphatase receptor type C-associated DUF913 PF06025.12 gi|154151357|ref|YP_001404975.1| - 0.59 9.1 2.1 0.63 9.0 2.1 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) Nop14 PF04147.12 gi|154151357|ref|YP_001404975.1| - 0.78 7.9 17.6 0.86 7.7 17.6 1.0 1 0 0 1 1 1 0 Nop14-like family CPSF100_C PF13299.6 gi|154151357|ref|YP_001404975.1| - 0.99 9.6 6.4 1.2 9.3 6.4 1.1 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal TRAP_alpha PF03896.16 gi|154151357|ref|YP_001404975.1| - 1.1 8.4 9.7 1.5 8.0 9.7 1.2 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit GCIP PF13324.6 gi|154151357|ref|YP_001404975.1| - 1.5 8.4 9.4 1.7 8.2 9.4 1.1 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting FAM176 PF14851.6 gi|154151357|ref|YP_001404975.1| - 1.6 8.4 13.2 1.4 8.5 12.3 1.5 1 1 1 2 2 2 0 FAM176 family RPN2_C PF18004.1 gi|154151357|ref|YP_001404975.1| - 2 8.3 12.7 2.8 7.8 12.7 1.3 1 0 0 1 1 1 0 26S proteasome regulatory subunit RPN2 C-terminal domain TFB6 PF17110.5 gi|154151357|ref|YP_001404975.1| - 2.7 7.7 7.8 3.4 7.4 7.8 1.1 1 0 0 1 1 1 0 Subunit 11 of the general transcription factor TFIIH RRN3 PF05327.11 gi|154151357|ref|YP_001404975.1| - 3.5 6.1 11.1 3.9 5.9 11.1 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Dicty_REP PF05086.12 gi|154151357|ref|YP_001404975.1| - 3.8 5.4 11.0 4.5 5.1 11.0 1.1 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein Paf1 PF03985.13 gi|154151357|ref|YP_001404975.1| - 6.5 5.6 18.2 7.7 5.4 18.2 1.1 1 0 0 1 1 1 0 Paf1 PBP1_TM PF14812.6 gi|154151357|ref|YP_001404975.1| - 7.3 7.0 16.6 4.1 7.8 13.7 1.9 2 0 0 2 2 2 0 Transmembrane domain of transglycosylase PBP1 at N-terminal Cnd2 PF05786.14 gi|154151357|ref|YP_001404975.1| - 8.6 4.9 13.6 9.8 4.7 13.6 1.0 1 0 0 1 1 1 0 Condensin complex subunit 2 DUF4611 PF15387.6 gi|154151357|ref|YP_001404975.1| - 9 6.6 20.8 40 4.5 20.8 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4611) Prefoldin_2 PF01920.20 gi|154151358|ref|YP_001404976.1| - 3.1e-22 78.5 14.4 3.8e-22 78.3 14.4 1.1 1 0 0 1 1 1 1 Prefoldin subunit APG6_N PF17675.1 gi|154151358|ref|YP_001404976.1| - 0.0081 16.7 7.0 0.011 16.2 7.0 1.2 1 0 0 1 1 1 1 Apg6 coiled-coil region DUF2408 PF10303.9 gi|154151358|ref|YP_001404976.1| - 0.028 15.0 2.5 0.047 14.3 2.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) Glyco_H_20C_C PF18088.1 gi|154151358|ref|YP_001404976.1| - 0.037 13.9 0.6 0.037 13.9 0.6 1.9 1 1 0 2 2 2 0 Glycoside Hydrolase 20C C-terminal domain DUF4510 PF14971.6 gi|154151358|ref|YP_001404976.1| - 0.047 14.0 2.9 0.72 10.2 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4510) Laminin_II PF06009.12 gi|154151358|ref|YP_001404976.1| - 0.055 13.5 10.9 0.1 12.6 9.3 1.8 1 1 1 2 2 2 0 Laminin Domain II GIT_CC PF16559.5 gi|154151358|ref|YP_001404976.1| - 0.06 13.2 0.9 0.06 13.2 0.9 2.3 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor TPR_MLP1_2 PF07926.12 gi|154151358|ref|YP_001404976.1| - 0.072 13.2 9.1 0.81 9.8 0.9 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein ALIX_LYPXL_bnd PF13949.6 gi|154151358|ref|YP_001404976.1| - 0.079 12.2 7.1 0.1 11.9 7.1 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Nup54 PF13874.6 gi|154151358|ref|YP_001404976.1| - 0.096 12.8 8.4 0.14 12.2 0.3 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 DHR10 PF18595.1 gi|154151358|ref|YP_001404976.1| - 0.11 12.5 11.6 0.37 10.9 1.4 2.2 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain DUF4404 PF14357.6 gi|154151358|ref|YP_001404976.1| - 0.14 12.8 5.4 2.1 9.0 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) Prefoldin PF02996.17 gi|154151358|ref|YP_001404976.1| - 0.24 11.3 10.1 0.43 10.5 1.8 2.3 1 1 0 2 2 2 0 Prefoldin subunit DUF724 PF05266.14 gi|154151358|ref|YP_001404976.1| - 1.1 9.1 8.2 44 3.8 8.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF724) DUF4140 PF13600.6 gi|154151358|ref|YP_001404976.1| - 1.1 9.7 7.9 30 5.1 7.9 2.2 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) SlyX PF04102.12 gi|154151358|ref|YP_001404976.1| - 1.6 9.4 8.4 8.7 7.0 0.2 2.4 2 0 0 2 2 2 0 SlyX ZapB PF06005.12 gi|154151358|ref|YP_001404976.1| - 1.9 9.0 12.1 0.8 10.2 3.5 2.3 2 0 0 2 2 2 0 Cell division protein ZapB Fib_alpha PF08702.10 gi|154151358|ref|YP_001404976.1| - 2.2 8.5 7.4 3.4 7.8 7.4 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FlaC_arch PF05377.11 gi|154151358|ref|YP_001404976.1| - 2.5 8.6 6.6 4.6 7.7 0.9 2.9 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) LPP PF04728.13 gi|154151358|ref|YP_001404976.1| - 2.6 8.5 9.4 22 5.6 0.2 2.5 2 0 0 2 2 2 0 Lipoprotein leucine-zipper GAS PF13851.6 gi|154151358|ref|YP_001404976.1| - 2.6 7.3 14.2 1.5 8.1 2.6 2.1 1 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF4795 PF16043.5 gi|154151358|ref|YP_001404976.1| - 2.9 7.5 10.7 1.8 8.1 2.1 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4795) Spc7 PF08317.11 gi|154151358|ref|YP_001404976.1| - 3.5 6.4 12.9 16 4.2 12.6 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein Spc24 PF08286.11 gi|154151358|ref|YP_001404976.1| - 3.8 7.8 10.9 1.2 9.4 1.8 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 YabA PF06156.13 gi|154151358|ref|YP_001404976.1| - 9 7.0 8.9 14 6.4 1.8 2.1 1 1 0 2 2 2 0 Initiation control protein YabA Pcc1 PF09341.10 gi|154151359|ref|YP_001404977.1| - 2.9e-09 36.9 0.4 3.5e-09 36.7 0.4 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.13 gi|154151360|ref|YP_001404978.1| - 1.4e-12 47.0 6.8 1.8e-12 46.7 6.8 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|154151360|ref|YP_001404978.1| - 4.7e-05 22.6 2.5 0.00018 20.8 2.7 1.8 1 1 0 1 1 1 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|154151360|ref|YP_001404978.1| - 6.6e-05 22.4 2.2 0.024 14.2 0.4 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|154151360|ref|YP_001404978.1| - 0.00016 21.3 1.2 0.00022 20.8 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc-ribbon_6 PF10005.9 gi|154151360|ref|YP_001404978.1| - 0.00033 21.3 0.2 0.00034 21.2 0.2 1.0 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|154151360|ref|YP_001404978.1| - 0.00079 19.4 0.6 0.00079 19.4 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cys_rich_CPXG PF14255.6 gi|154151360|ref|YP_001404978.1| - 0.0027 17.6 3.1 0.15 12.0 0.7 2.1 1 1 1 2 2 2 2 Cysteine-rich CPXCG zinc-ribbons_6 PF07191.12 gi|154151360|ref|YP_001404978.1| - 0.0027 17.6 0.5 0.0029 17.6 0.5 1.1 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.7 gi|154151360|ref|YP_001404978.1| - 0.0036 17.3 0.7 0.0043 17.1 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|154151360|ref|YP_001404978.1| - 0.011 15.8 4.4 0.02 14.9 4.4 1.4 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.6 gi|154151360|ref|YP_001404978.1| - 0.014 15.3 0.7 0.016 15.1 0.7 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.7 gi|154151360|ref|YP_001404978.1| - 0.02 14.9 4.2 0.4 10.7 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|154151360|ref|YP_001404978.1| - 0.023 14.6 4.8 1.2 9.1 4.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF1272 PF06906.11 gi|154151360|ref|YP_001404978.1| - 0.025 14.7 0.4 0.028 14.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-AN1 PF01428.16 gi|154151360|ref|YP_001404978.1| - 0.029 14.5 2.0 0.039 14.1 2.0 1.3 1 0 0 1 1 1 0 AN1-like Zinc finger Zn-ribbon_8 PF09723.10 gi|154151360|ref|YP_001404978.1| - 0.03 14.5 3.3 0.057 13.5 3.3 1.4 1 1 0 1 1 1 0 Zinc ribbon domain YacG PF03884.14 gi|154151360|ref|YP_001404978.1| - 0.032 13.9 1.3 0.39 10.5 2.2 1.9 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG TFIIS_C PF01096.18 gi|154151360|ref|YP_001404978.1| - 0.039 13.8 2.5 4.9 7.1 0.4 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF951 PF06107.11 gi|154151360|ref|YP_001404978.1| - 0.062 13.2 1.6 0.16 11.9 0.1 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zinc_ribbon_10 PF10058.9 gi|154151360|ref|YP_001404978.1| - 0.092 12.5 2.2 5.5 6.8 0.2 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein CpXC PF14353.6 gi|154151360|ref|YP_001404978.1| - 0.14 12.2 2.0 2.6 8.1 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-LITAF-like PF10601.9 gi|154151360|ref|YP_001404978.1| - 0.22 11.8 4.0 1.5 9.1 0.2 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-Di19 PF05605.12 gi|154151360|ref|YP_001404978.1| - 0.28 11.5 3.4 0.57 10.5 0.3 2.0 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DiS_P_DiS PF06750.13 gi|154151360|ref|YP_001404978.1| - 0.29 11.3 2.4 7.3 6.8 0.0 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Desulfoferrod_N PF06397.12 gi|154151360|ref|YP_001404978.1| - 0.3 10.7 3.1 1.9 8.2 0.5 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Zn_ribbon_SprT PF17283.2 gi|154151360|ref|YP_001404978.1| - 0.37 10.7 8.4 1.5 8.8 1.1 2.1 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Mu-like_Com PF10122.9 gi|154151360|ref|YP_001404978.1| - 0.53 9.8 4.7 0.88 9.1 0.3 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com Ribosomal_L37ae PF01780.19 gi|154151361|ref|YP_001404979.1| - 1.1e-31 108.7 4.3 1.3e-31 108.5 4.3 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family IBR PF01485.21 gi|154151361|ref|YP_001404979.1| - 0.0027 17.9 0.3 0.0038 17.4 0.3 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain OrfB_Zn_ribbon PF07282.11 gi|154151361|ref|YP_001404979.1| - 0.01 15.8 2.3 0.01 15.8 2.3 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|154151361|ref|YP_001404979.1| - 0.015 14.8 0.4 0.023 14.2 0.4 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|154151361|ref|YP_001404979.1| - 0.041 14.0 2.6 5.2 7.2 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.7 gi|154151361|ref|YP_001404979.1| - 0.053 13.5 3.3 0.053 13.5 3.3 1.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain RPA_interact_C PF14768.6 gi|154151361|ref|YP_001404979.1| - 0.056 14.0 0.0 0.079 13.5 0.0 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Zn-ribbon_8 PF09723.10 gi|154151361|ref|YP_001404979.1| - 0.061 13.5 2.4 1 9.5 0.7 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|154151361|ref|YP_001404979.1| - 0.078 12.4 2.8 4.2 6.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain XTBD PF11952.8 gi|154151361|ref|YP_001404979.1| - 0.09 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 XRN-Two Binding Domain, XTBD zf_C2H2_10 PF18414.1 gi|154151361|ref|YP_001404979.1| - 0.19 11.3 3.2 1.7 8.2 0.5 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger Rep_fac-A_C PF08646.10 gi|154151361|ref|YP_001404979.1| - 0.28 10.9 1.2 0.48 10.2 1.2 1.4 1 1 0 1 1 1 0 Replication factor-A C terminal domain zf-H2C2_2 PF13465.6 gi|154151361|ref|YP_001404979.1| - 0.73 10.4 5.3 7.5 7.2 0.3 2.4 1 1 1 2 2 2 0 Zinc-finger double domain RNA_POL_M_15KD PF02150.16 gi|154151361|ref|YP_001404979.1| - 1.2 9.1 4.3 3.5 7.6 2.9 2.3 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_11 PF16622.5 gi|154151361|ref|YP_001404979.1| - 2.1 8.2 4.9 4.6 7.1 0.6 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type Zn_ribbon_SprT PF17283.2 gi|154151361|ref|YP_001404979.1| - 3.8 7.5 9.1 4.7 7.2 2.4 2.4 1 1 1 2 2 2 0 SprT-like zinc ribbon domain SBDS_C PF09377.10 gi|154151362|ref|YP_001404980.1| - 4.3e-22 78.3 0.0 7e-22 77.6 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain SBDS PF01172.18 gi|154151362|ref|YP_001404980.1| - 7.6e-21 74.0 0.2 1.3e-20 73.2 0.2 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein Proteasome PF00227.26 gi|154151363|ref|YP_001404981.1| - 1.9e-60 203.6 0.2 2.6e-60 203.2 0.2 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|154151363|ref|YP_001404981.1| - 3.1e-14 52.3 0.2 5.6e-14 51.5 0.2 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|154151364|ref|YP_001404982.1| - 2.1e-14 53.6 0.0 2.7e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.16 gi|154151365|ref|YP_001404983.1| - 1.3e-17 64.0 0.0 4.7e-17 62.2 0.0 1.6 1 1 1 2 2 2 1 RNase P subunit p30 Ribosomal_L15e PF00827.17 gi|154151366|ref|YP_001404984.1| - 3.3e-80 268.3 10.1 3.8e-80 268.1 10.1 1.0 1 0 0 1 1 1 1 Ribosomal L15 DUF4440 PF14534.6 gi|154151366|ref|YP_001404984.1| - 0.0043 17.4 0.3 0.0078 16.6 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) MoaC PF01967.21 gi|154151367|ref|YP_001404985.1| - 8.3e-48 161.9 1.9 9.4e-48 161.7 1.9 1.0 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.17 gi|154151368|ref|YP_001404986.1| - 4.7e-45 154.0 0.1 7.8e-45 153.2 0.1 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|154151368|ref|YP_001404986.1| - 5e-30 104.6 0.0 1.3e-29 103.2 0.0 1.7 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|154151368|ref|YP_001404986.1| - 2.2e-06 27.3 0.0 3.9e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family DHHA1 PF02272.19 gi|154151369|ref|YP_001404987.1| - 7.5e-15 55.6 0.1 1.7e-14 54.4 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|154151369|ref|YP_001404987.1| - 7.5e-05 22.9 0.0 0.00013 22.1 0.0 1.3 1 0 0 1 1 1 1 DHH family SBP_bac_5 PF00496.22 gi|154151369|ref|YP_001404987.1| - 0.17 10.8 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle TGT_C2 PF14810.6 gi|154151370|ref|YP_001404988.1| - 2.1e-29 101.5 0.4 9.2e-29 99.4 0.1 2.0 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|154151370|ref|YP_001404988.1| - 2.9e-14 52.8 0.3 4.5e-14 52.2 0.3 1.2 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|154151370|ref|YP_001404988.1| - 0.17 12.2 0.0 0.26 11.6 0.0 1.3 1 0 0 1 1 1 0 UPF0113 PUA domain NAC PF01849.18 gi|154151371|ref|YP_001404989.1| - 4e-16 58.7 1.0 7.2e-16 57.9 1.0 1.4 1 0 0 1 1 1 1 NAC domain DUF4158 PF13700.6 gi|154151371|ref|YP_001404989.1| - 0.13 12.1 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4158) GCD14 PF08704.10 gi|154151372|ref|YP_001404990.1| - 3.3e-07 30.2 0.1 2.3e-06 27.5 0.0 1.8 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.20 gi|154151372|ref|YP_001404990.1| - 6.4e-05 22.1 0.0 9.1e-05 21.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|154151372|ref|YP_001404990.1| - 0.00012 21.9 0.3 0.00019 21.3 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|154151372|ref|YP_001404990.1| - 0.0002 21.3 0.0 0.00028 20.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154151372|ref|YP_001404990.1| - 0.00097 19.0 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154151372|ref|YP_001404990.1| - 0.0011 19.6 0.1 0.0019 18.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|154151372|ref|YP_001404990.1| - 0.0023 17.4 0.1 0.0029 17.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|154151372|ref|YP_001404990.1| - 0.0094 16.6 0.1 0.016 15.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|154151372|ref|YP_001404990.1| - 0.016 14.8 0.1 0.026 14.1 0.1 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|154151372|ref|YP_001404990.1| - 0.17 11.8 0.1 0.43 10.5 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain UDPG_MGDP_dh_N PF03721.14 gi|154151373|ref|YP_001404991.1| - 4.3e-32 111.2 0.0 6.5e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|154151373|ref|YP_001404991.1| - 2.3e-22 79.4 0.0 4.1e-22 78.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|154151373|ref|YP_001404991.1| - 8.7e-21 73.9 0.0 2e-20 72.8 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain GFO_IDH_MocA PF01408.22 gi|154151374|ref|YP_001404992.1| - 2.1e-21 77.0 1.7 3.4e-21 76.3 1.7 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.19 gi|154151374|ref|YP_001404992.1| - 1.9e-07 31.7 1.1 5.8e-07 30.1 1.1 1.8 1 0 0 1 1 1 1 CoA binding domain NAD_binding_2 PF03446.15 gi|154151374|ref|YP_001404992.1| - 2e-06 28.1 0.3 4.9e-06 26.8 0.2 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding_2 PF13380.6 gi|154151374|ref|YP_001404992.1| - 0.0008 19.9 0.7 0.0029 18.1 0.4 1.9 2 0 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.17 gi|154151374|ref|YP_001404992.1| - 0.0015 19.0 0.2 0.0041 17.7 0.2 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|154151374|ref|YP_001404992.1| - 0.01 15.2 0.1 0.018 14.4 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|154151374|ref|YP_001404992.1| - 0.024 14.2 0.2 0.049 13.2 0.2 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ArdA PF07275.11 gi|154151374|ref|YP_001404992.1| - 0.051 14.2 0.0 0.14 12.7 0.0 1.7 2 0 0 2 2 2 0 Antirestriction protein (ArdA) DegT_DnrJ_EryC1 PF01041.17 gi|154151375|ref|YP_001404993.1| - 6.7e-133 443.4 0.0 7.6e-133 443.3 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|154151375|ref|YP_001404993.1| - 6.9e-09 35.3 0.0 1.1e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|154151375|ref|YP_001404993.1| - 8.4e-07 28.6 0.4 1.7e-06 27.5 0.4 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|154151375|ref|YP_001404993.1| - 4e-06 26.0 0.0 6.2e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|154151375|ref|YP_001404993.1| - 0.00025 19.7 0.0 0.00042 19.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|154151375|ref|YP_001404993.1| - 0.0036 16.1 0.0 0.0048 15.7 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain PyrI PF01948.18 gi|154151376|ref|YP_001404994.1| - 1e-30 105.8 2.0 1.3e-30 105.5 2.0 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|154151376|ref|YP_001404994.1| - 1.2e-12 47.5 0.2 3.8e-12 45.9 0.0 1.8 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain CTP_transf_like PF01467.26 gi|154151377|ref|YP_001404995.1| - 1.7e-13 51.0 0.0 2.1e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|154151377|ref|YP_001404995.1| - 0.016 15.1 0.1 0.029 14.3 0.1 1.5 1 0 0 1 1 1 0 FAD synthetase Hexapep PF00132.24 gi|154151378|ref|YP_001404996.1| - 2.4e-15 55.5 18.4 5.4e-08 32.3 2.5 4.5 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|154151378|ref|YP_001404996.1| - 0.00024 20.8 21.3 0.0025 17.5 2.7 4.7 2 1 3 5 5 5 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|154151378|ref|YP_001404996.1| - 0.088 11.7 0.1 0.14 11.0 0.1 1.4 1 1 0 1 1 1 0 L-fucokinase DUF4954 PF16314.5 gi|154151378|ref|YP_001404996.1| - 0.16 10.0 1.1 0.25 9.4 1.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) Pyr_redox_2 PF07992.14 gi|154151379|ref|YP_001404997.1| - 4.6e-22 78.6 0.0 2.3e-11 43.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|154151379|ref|YP_001404997.1| - 1.6e-09 37.2 15.3 5.4e-05 22.8 5.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|154151379|ref|YP_001404997.1| - 1.7e-08 34.5 6.6 1.7e-08 34.5 6.6 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|154151379|ref|YP_001404997.1| - 5.1e-07 30.5 6.7 0.0061 17.5 0.1 3.0 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Pyr_redox PF00070.27 gi|154151379|ref|YP_001404997.1| - 5.1e-07 30.2 1.5 8.2e-06 26.3 1.5 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|154151379|ref|YP_001404997.1| - 1.3e-06 28.2 1.9 0.00035 20.3 0.7 3.1 3 1 1 4 4 4 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|154151379|ref|YP_001404997.1| - 1.5e-06 28.3 0.0 3.8e-06 27.0 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_10 PF13237.6 gi|154151379|ref|YP_001404997.1| - 1.8e-06 28.0 19.6 3e-06 27.3 10.2 2.7 2 1 1 3 3 2 2 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|154151379|ref|YP_001404997.1| - 3.1e-06 26.8 0.0 5.1e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_8 PF13183.6 gi|154151379|ref|YP_001404997.1| - 4.6e-06 27.0 12.5 0.0021 18.5 1.6 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154151379|ref|YP_001404997.1| - 8e-06 26.3 3.7 8e-06 26.3 3.7 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|154151379|ref|YP_001404997.1| - 8.3e-06 26.3 15.8 0.00015 22.3 2.1 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|154151379|ref|YP_001404997.1| - 2.8e-05 24.0 16.9 0.0073 16.3 3.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154151379|ref|YP_001404997.1| - 3e-05 23.9 19.9 0.00019 21.4 3.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain FAD_binding_2 PF00890.24 gi|154151379|ref|YP_001404997.1| - 4.9e-05 22.6 0.5 8.1e-05 21.9 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_4 PF12800.7 gi|154151379|ref|YP_001404997.1| - 0.00018 21.8 11.7 0.074 13.6 2.1 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain GIDA PF01134.22 gi|154151379|ref|YP_001404997.1| - 0.00022 20.4 0.2 0.00075 18.7 0.0 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|154151379|ref|YP_001404997.1| - 0.00046 19.5 6.7 0.069 12.4 0.5 3.2 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|154151379|ref|YP_001404997.1| - 0.0012 18.2 0.6 0.07 12.4 0.0 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Fer4_15 PF13459.6 gi|154151379|ref|YP_001404997.1| - 0.0019 18.9 7.7 0.47 11.2 1.1 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|154151379|ref|YP_001404997.1| - 0.0024 18.4 7.9 0.25 11.9 1.1 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I HI0933_like PF03486.14 gi|154151379|ref|YP_001404997.1| - 0.0056 15.4 2.9 0.02 13.6 0.3 2.5 2 1 1 3 3 3 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|154151379|ref|YP_001404997.1| - 0.0093 15.2 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_21 PF14697.6 gi|154151379|ref|YP_001404997.1| - 0.0097 16.0 1.4 0.0097 16.0 1.4 3.2 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|154151379|ref|YP_001404997.1| - 0.015 16.1 0.9 0.015 16.1 0.9 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Thi4 PF01946.17 gi|154151379|ref|YP_001404997.1| - 0.042 13.1 0.0 0.19 10.9 0.0 2.1 2 0 0 2 2 2 0 Thi4 family Fer4_3 PF12798.7 gi|154151379|ref|YP_001404997.1| - 0.065 14.2 5.2 0.065 14.2 5.2 3.6 4 0 0 4 4 2 0 4Fe-4S binding domain NAD_binding_9 PF13454.6 gi|154151379|ref|YP_001404997.1| - 0.23 11.4 1.3 0.45 10.5 0.1 2.1 3 0 0 3 3 2 0 FAD-NAD(P)-binding Fer4_18 PF13746.6 gi|154151379|ref|YP_001404997.1| - 9.7 6.4 18.9 0.39 10.9 1.8 3.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain IF-2B PF01008.17 gi|154151380|ref|YP_001404998.1| - 9.7e-76 254.7 0.0 1.1e-75 254.4 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family ACP_syn_III PF08545.10 gi|154151380|ref|YP_001404998.1| - 0.032 14.1 1.3 5.3 7.0 0.2 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF116 PF01976.17 gi|154151381|ref|YP_001404999.1| - 8e-50 168.4 0.0 9.6e-50 168.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 Bactofilin PF04519.13 gi|154151382|ref|YP_001405000.1| - 7.8e-07 29.3 0.9 0.0046 17.2 0.0 2.2 1 1 1 2 2 2 2 Polymer-forming cytoskeletal UbiA PF01040.18 gi|154151383|ref|YP_001405001.1| - 4e-38 131.2 33.4 5.3e-38 130.8 33.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family TcfC PF16967.5 gi|154151384|ref|YP_001405002.1| - 0.017 14.6 0.0 0.033 13.7 0.0 1.5 1 0 0 1 1 1 0 E-set like domain TRM PF02005.16 gi|154151385|ref|YP_001405003.1| - 9.9e-87 291.5 0.0 1.1e-86 291.4 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_25 PF13649.6 gi|154151385|ref|YP_001405003.1| - 0.0048 17.6 0.0 0.014 16.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|154151385|ref|YP_001405003.1| - 0.011 15.2 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Zn-ribbon_8 PF09723.10 gi|154151385|ref|YP_001405003.1| - 0.13 12.3 0.8 0.48 10.6 0.8 2.0 1 0 0 1 1 1 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|154151385|ref|YP_001405003.1| - 0.32 11.5 1.1 35 5.0 0.0 2.6 2 0 0 2 2 2 0 Zinc-finger double domain MMR_HSR1_Xtn PF16897.5 gi|154151388|ref|YP_001405006.1| - 1.3e-27 95.8 0.0 2.4e-27 95.0 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|154151388|ref|YP_001405006.1| - 7.6e-20 71.1 0.1 1.4e-19 70.3 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|154151388|ref|YP_001405006.1| - 1.9e-18 66.3 0.0 3.6e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|154151388|ref|YP_001405006.1| - 1.5e-14 53.8 0.3 3e-11 43.1 0.0 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|154151388|ref|YP_001405006.1| - 3.2e-06 27.2 0.0 0.1 12.5 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|154151388|ref|YP_001405006.1| - 0.00015 21.8 0.3 0.063 13.3 0.2 2.4 1 1 0 2 2 2 2 Dynamin family GTP_EFTU PF00009.27 gi|154151388|ref|YP_001405006.1| - 0.0015 18.1 1.1 0.11 12.0 0.0 3.2 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|154151388|ref|YP_001405006.1| - 0.0019 17.6 0.1 0.0037 16.7 0.1 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Arf PF00025.21 gi|154151388|ref|YP_001405006.1| - 0.0086 15.5 1.8 0.13 11.7 0.2 3.0 2 2 1 3 3 3 1 ADP-ribosylation factor family AAA_28 PF13521.6 gi|154151388|ref|YP_001405006.1| - 0.028 14.7 0.1 0.051 13.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|154151388|ref|YP_001405006.1| - 0.045 13.3 3.0 1 8.9 0.3 2.5 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AIG1 PF04548.16 gi|154151388|ref|YP_001405006.1| - 0.053 12.8 0.1 0.081 12.2 0.1 1.2 1 0 0 1 1 1 0 AIG1 family RHD3 PF05879.12 gi|154151388|ref|YP_001405006.1| - 0.21 9.7 0.1 0.31 9.1 0.1 1.2 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) EbsA PF17255.2 gi|154151389|ref|YP_001405007.1| - 0.045 14.1 0.4 0.15 12.4 0.2 1.8 2 0 0 2 2 2 0 EbsA-like protein ParE_toxin PF05016.15 gi|154151390|ref|YP_001405008.1| - 4.7e-05 23.9 3.0 5.3e-05 23.7 3.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE VAPB_antitox PF02697.14 gi|154151391|ref|YP_001405009.1| - 1.4e-07 32.2 0.9 2.7e-07 31.3 0.9 1.7 1 1 0 1 1 1 1 Putative antitoxin YtxH PF12732.7 gi|154151391|ref|YP_001405009.1| - 0.04 14.4 0.1 0.047 14.2 0.1 1.2 1 0 0 1 1 1 0 YtxH-like protein RHH_1 PF01402.21 gi|154151391|ref|YP_001405009.1| - 0.04 13.9 0.2 0.18 11.8 0.0 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family TPR_2 PF07719.17 gi|154151392|ref|YP_001405010.1| - 1.4e-15 56.1 0.1 7.9e-07 28.7 0.1 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|154151392|ref|YP_001405010.1| - 8.2e-14 50.8 0.0 1.6e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154151392|ref|YP_001405010.1| - 1.2e-10 41.4 0.0 2.5e-10 40.4 0.0 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154151392|ref|YP_001405010.1| - 7.5e-09 35.1 0.0 0.0035 17.4 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154151392|ref|YP_001405010.1| - 1.3e-08 34.4 0.1 5.7e-06 25.9 0.0 2.3 1 1 1 2 2 2 2 TPR repeat TPR_16 PF13432.6 gi|154151392|ref|YP_001405010.1| - 4.8e-08 33.5 0.4 7.8e-08 32.8 0.4 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154151392|ref|YP_001405010.1| - 1.9e-05 25.1 0.1 3.7e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154151392|ref|YP_001405010.1| - 2.8e-05 24.6 0.2 0.039 14.8 0.1 2.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|154151392|ref|YP_001405010.1| - 0.00018 21.7 0.1 0.036 14.4 0.0 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154151392|ref|YP_001405010.1| - 0.00099 19.4 0.0 1.1 9.6 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154151392|ref|YP_001405010.1| - 0.0041 17.0 0.1 4.8 7.4 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|154151392|ref|YP_001405010.1| - 0.018 15.1 0.0 0.25 11.4 0.0 2.1 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat TPR_6 PF13174.6 gi|154151392|ref|YP_001405010.1| - 0.096 13.4 0.1 4.4 8.1 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat NARP1 PF12569.8 gi|154151392|ref|YP_001405010.1| - 0.31 9.9 0.0 0.42 9.5 0.0 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 DEC-1_N PF04625.13 gi|154151392|ref|YP_001405010.1| - 0.46 9.4 7.0 0.61 9.0 7.0 1.2 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Trans_coact PF16805.5 gi|154151393|ref|YP_001405011.1| - 0.052 13.6 0.4 1.9 8.6 0.1 2.2 1 1 1 2 2 2 0 Phage late-transcription coactivator WD40 PF00400.32 gi|154151394|ref|YP_001405012.1| - 1.6e-09 38.2 9.8 0.077 13.9 0.7 6.6 7 1 1 8 8 8 3 WD domain, G-beta repeat ANAPC4_WD40 PF12894.7 gi|154151394|ref|YP_001405012.1| - 0.00011 22.4 0.4 2.2 8.6 0.0 3.9 3 1 1 4 4 4 2 Anaphase-promoting complex subunit 4 WD40 domain PQQ_3 PF13570.6 gi|154151394|ref|YP_001405012.1| - 0.0024 18.3 24.4 2.6 8.6 1.5 6.8 7 0 0 7 7 7 4 PQQ-like domain Flavin_Reduct PF01613.18 gi|154151395|ref|YP_001405013.1| - 3e-22 79.3 0.1 3.6e-22 79.1 0.1 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF498 PF04430.14 gi|154151396|ref|YP_001405014.1| - 2.4e-05 24.3 0.0 3e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) MatE PF01554.18 gi|154151398|ref|YP_001405016.1| - 3.7e-58 195.7 45.7 7.3e-31 107.0 16.5 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|154151398|ref|YP_001405016.1| - 3.7e-10 40.0 16.6 3.7e-10 40.0 16.6 5.0 3 1 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain TrmB PF01978.19 gi|154151399|ref|YP_001405017.1| - 0.00048 19.9 0.0 0.00076 19.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|154151399|ref|YP_001405017.1| - 0.00082 19.2 0.1 0.0013 18.6 0.1 1.3 1 0 0 1 1 1 1 MarR family SMC_ScpB PF04079.16 gi|154151399|ref|YP_001405017.1| - 0.041 13.5 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB HEAT_2 PF13646.6 gi|154151402|ref|YP_001405020.1| - 5.9e-31 106.7 10.1 6.1e-17 61.8 3.7 2.3 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.22 gi|154151402|ref|YP_001405020.1| - 4.4e-23 79.4 2.9 0.0023 18.0 0.0 5.2 5 0 0 5 5 5 5 HEAT repeat HEAT_PBS PF03130.16 gi|154151402|ref|YP_001405020.1| - 5.1e-18 63.9 21.2 0.00019 21.8 0.1 5.2 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|154151402|ref|YP_001405020.1| - 2.8e-13 50.0 14.5 0.0018 18.7 0.2 5.1 4 1 1 5 5 5 5 HEAT-like repeat Arm PF00514.23 gi|154151402|ref|YP_001405020.1| - 6.2e-11 42.0 0.8 0.27 11.3 0.0 5.1 5 0 0 5 5 5 3 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|154151402|ref|YP_001405020.1| - 1.5e-07 31.6 0.0 0.0085 16.2 0.0 3.5 1 1 1 2 2 2 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|154151402|ref|YP_001405020.1| - 0.0061 15.2 0.0 0.11 11.1 0.0 2.0 1 1 1 2 2 2 1 Adaptin N terminal region Vac14_Fab1_bd PF12755.7 gi|154151402|ref|YP_001405020.1| - 0.0071 16.9 0.0 3.3 8.4 0.0 3.2 1 1 2 3 3 3 1 Vacuolar 14 Fab1-binding region DUF4042 PF13251.6 gi|154151402|ref|YP_001405020.1| - 0.013 15.2 0.7 9.6 5.9 0.0 3.3 1 1 3 4 4 4 0 Domain of unknown function (DUF4042) NopRA1 PF16201.5 gi|154151402|ref|YP_001405020.1| - 0.024 14.2 0.0 20 4.7 0.0 3.8 4 0 0 4 4 4 0 Nucleolar pre-ribosomal-associated protein 1 TPR_4 PF07721.14 gi|154151402|ref|YP_001405020.1| - 3.1 8.7 17.3 4.1 8.3 0.2 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat PsiE PF06146.12 gi|154151403|ref|YP_001405021.1| - 2.1e-07 31.2 10.0 2.1e-07 31.2 10.0 1.9 2 0 0 2 2 2 1 Phosphate-starvation-inducible E Frizzled PF01534.17 gi|154151403|ref|YP_001405021.1| - 5.8 5.8 12.9 3.4 6.6 5.4 2.1 1 1 1 2 2 2 0 Frizzled/Smoothened family membrane region ABC_tran PF00005.27 gi|154151404|ref|YP_001405022.1| - 7.6e-30 104.2 0.0 1.2e-29 103.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154151404|ref|YP_001405022.1| - 1.5e-15 57.8 0.1 7.1e-11 42.5 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|154151404|ref|YP_001405022.1| - 1.8e-05 24.6 0.0 0.0099 15.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF4162 PF13732.6 gi|154151404|ref|YP_001405022.1| - 0.00051 20.7 0.0 0.001 19.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) Ribosomal_S7e PF01251.18 gi|154151404|ref|YP_001405022.1| - 0.0007 19.4 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S7e AAA_23 PF13476.6 gi|154151404|ref|YP_001405022.1| - 0.0028 18.2 0.0 0.0049 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|154151404|ref|YP_001405022.1| - 0.0057 16.1 0.1 1.1 8.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|154151404|ref|YP_001405022.1| - 0.06 13.1 0.0 0.27 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|154151405|ref|YP_001405023.1| - 2.4e-20 72.8 23.8 2.4e-20 72.8 23.8 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|154151405|ref|YP_001405023.1| - 1.6e-07 30.7 33.4 2.3e-07 30.2 33.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2721 PF11026.8 gi|154151407|ref|YP_001405025.1| - 0.0033 17.3 0.7 0.004 17.0 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2721) MTS PF05175.14 gi|154151408|ref|YP_001405026.1| - 1.6e-09 37.5 0.0 2.6e-07 30.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.13 gi|154151408|ref|YP_001405026.1| - 1.3e-06 28.1 0.0 1.9e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|154151408|ref|YP_001405026.1| - 2.8e-05 24.0 0.0 0.00022 21.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154151408|ref|YP_001405026.1| - 5.2e-05 23.9 0.0 0.00016 22.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154151408|ref|YP_001405026.1| - 0.00018 21.3 0.0 0.00026 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Arteri_nsp7a PF16749.5 gi|154151408|ref|YP_001405026.1| - 0.00026 21.2 0.0 0.037 14.2 0.0 2.1 2 0 0 2 2 2 1 Arterivirus nonstructural protein 7 alpha UPF0146 PF03686.13 gi|154151408|ref|YP_001405026.1| - 0.00041 20.2 0.1 0.00087 19.2 0.0 1.5 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0146) Methyltransf_12 PF08242.12 gi|154151408|ref|YP_001405026.1| - 0.00081 20.1 0.0 0.026 15.2 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154151408|ref|YP_001405026.1| - 0.00089 19.9 0.0 0.0089 16.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.12 gi|154151408|ref|YP_001405026.1| - 0.0022 17.6 0.0 0.0035 17.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|154151408|ref|YP_001405026.1| - 0.0056 16.5 0.0 0.015 15.0 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|154151408|ref|YP_001405026.1| - 0.018 14.4 0.0 0.092 12.0 0.0 1.8 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase GCD14 PF08704.10 gi|154151408|ref|YP_001405026.1| - 0.024 14.3 0.0 0.03 14.0 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Met_10 PF02475.16 gi|154151408|ref|YP_001405026.1| - 0.033 13.9 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|154151408|ref|YP_001405026.1| - 0.041 13.8 0.0 0.058 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|154151408|ref|YP_001405026.1| - 0.097 13.7 0.0 0.19 12.8 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain ACP_syn_III_C PF08541.10 gi|154151408|ref|YP_001405026.1| - 0.099 12.8 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF4405 PF14358.6 gi|154151409|ref|YP_001405027.1| - 4.7e-10 39.9 4.1 5.9e-10 39.5 4.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) RrnaAD PF00398.20 gi|154151411|ref|YP_001405029.1| - 1.6e-46 158.5 0.0 1.9e-46 158.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|154151411|ref|YP_001405029.1| - 1.9e-05 25.3 0.0 3.4e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154151411|ref|YP_001405029.1| - 0.00019 22.0 0.0 0.00039 21.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.17 gi|154151411|ref|YP_001405029.1| - 0.0039 16.6 0.1 0.006 16.0 0.1 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_23 PF13489.6 gi|154151411|ref|YP_001405029.1| - 0.011 15.6 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|154151411|ref|YP_001405029.1| - 0.025 13.7 0.0 0.044 12.9 0.0 1.4 1 0 0 1 1 1 0 DREV methyltransferase DUF655 PF04919.12 gi|154151412|ref|YP_001405030.1| - 1.2e-64 217.5 0.3 1.4e-64 217.3 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|154151412|ref|YP_001405030.1| - 0.00041 20.6 0.0 0.0021 18.3 0.0 1.9 1 1 0 2 2 2 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|154151413|ref|YP_001405031.1| - 5.6e-10 39.6 0.7 6.2e-10 39.5 0.7 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 FliG_M PF14841.6 gi|154151413|ref|YP_001405031.1| - 0.015 15.5 0.4 0.031 14.5 0.3 1.6 1 1 0 1 1 1 0 FliG middle domain VIT1 PF01988.19 gi|154151413|ref|YP_001405031.1| - 0.2 11.5 0.5 0.24 11.3 0.5 1.1 1 0 0 1 1 1 0 VIT family Ribosomal_L21e PF01157.18 gi|154151414|ref|YP_001405032.1| - 5.6e-37 125.7 3.3 6.1e-37 125.5 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|154151415|ref|YP_001405033.1| - 5e-11 42.9 0.0 7e-10 39.2 0.0 2.4 2 1 0 2 2 2 1 THUMP domain FYVE PF01363.21 gi|154151415|ref|YP_001405033.1| - 0.023 14.8 2.7 0.079 13.1 0.1 2.7 3 0 0 3 3 3 0 FYVE zinc finger Methyltrn_RNA_2 PF04013.12 gi|154151416|ref|YP_001405034.1| - 3.6e-55 186.7 0.0 4e-55 186.6 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SRP54 PF00448.22 gi|154151417|ref|YP_001405035.1| - 3.9e-67 225.7 0.7 3.9e-67 225.7 0.7 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|154151417|ref|YP_001405035.1| - 5.2e-29 100.8 0.8 5.2e-29 100.8 0.8 2.9 3 0 0 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.19 gi|154151417|ref|YP_001405035.1| - 4.8e-16 58.7 4.9 1.8e-15 56.9 3.1 2.5 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 gi|154151417|ref|YP_001405035.1| - 1.3e-05 24.6 0.1 3.9e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin CbiA PF01656.23 gi|154151417|ref|YP_001405035.1| - 1.4e-05 25.2 0.0 6.8e-05 22.9 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|154151417|ref|YP_001405035.1| - 0.00015 21.4 1.2 0.00053 19.6 1.2 1.8 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|154151417|ref|YP_001405035.1| - 0.00028 21.2 0.2 0.0013 19.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|154151417|ref|YP_001405035.1| - 0.00032 20.6 0.1 0.00084 19.3 0.0 1.7 2 0 0 2 2 1 1 Adenylylsulphate kinase 6PF2K PF01591.18 gi|154151417|ref|YP_001405035.1| - 0.00034 20.0 0.0 0.0046 16.3 0.0 2.2 2 0 0 2 2 2 1 6-phosphofructo-2-kinase MeaB PF03308.16 gi|154151417|ref|YP_001405035.1| - 0.0014 17.6 0.5 0.0039 16.2 0.0 1.9 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ParA PF10609.9 gi|154151417|ref|YP_001405035.1| - 0.0015 18.0 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MobB PF03205.14 gi|154151417|ref|YP_001405035.1| - 0.0024 17.8 0.2 0.0056 16.6 0.2 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|154151417|ref|YP_001405035.1| - 0.004 17.5 0.2 0.011 16.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|154151417|ref|YP_001405035.1| - 0.0056 16.6 1.8 0.008 16.1 0.1 2.1 3 0 0 3 3 2 1 NTPase KTI12 PF08433.10 gi|154151417|ref|YP_001405035.1| - 0.0057 16.1 0.5 0.012 15.1 0.0 1.7 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|154151417|ref|YP_001405035.1| - 0.0058 17.2 0.1 0.036 14.6 0.1 2.3 1 1 0 1 1 1 1 AAA domain PFOR_II PF17147.4 gi|154151417|ref|YP_001405035.1| - 0.0069 16.7 0.3 0.091 13.1 0.0 2.7 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II AAA_16 PF13191.6 gi|154151417|ref|YP_001405035.1| - 0.01 16.2 0.0 0.026 14.9 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_31 PF13614.6 gi|154151417|ref|YP_001405035.1| - 0.014 15.4 0.5 0.044 13.7 0.4 2.0 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|154151417|ref|YP_001405035.1| - 0.016 14.2 0.1 0.22 10.4 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 gi|154151417|ref|YP_001405035.1| - 0.017 14.8 3.5 0.024 14.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|154151417|ref|YP_001405035.1| - 0.017 14.8 1.2 0.054 13.2 0.2 2.3 2 0 0 2 2 2 0 Thymidylate kinase ArsA_ATPase PF02374.15 gi|154151417|ref|YP_001405035.1| - 0.029 13.5 2.4 0.4 9.8 0.1 2.5 2 0 0 2 2 2 0 Anion-transporting ATPase ATP_bind_1 PF03029.17 gi|154151417|ref|YP_001405035.1| - 0.031 14.1 0.1 0.098 12.4 0.1 1.9 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|154151417|ref|YP_001405035.1| - 0.033 14.3 0.1 0.074 13.2 0.0 1.8 2 0 0 2 2 1 0 AAA domain LpxK PF02606.14 gi|154151417|ref|YP_001405035.1| - 0.038 13.1 0.1 0.073 12.1 0.1 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_26 PF13500.6 gi|154151417|ref|YP_001405035.1| - 0.053 13.4 0.2 0.16 11.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|154151417|ref|YP_001405035.1| - 0.15 12.5 0.7 3.7 8.0 0.1 2.8 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|154151417|ref|YP_001405035.1| - 0.16 11.7 0.8 0.52 10.0 0.0 2.2 3 0 0 3 3 2 0 Phosphoribulokinase / Uridine kinase family ResIII PF04851.15 gi|154151417|ref|YP_001405035.1| - 0.18 11.8 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit SpoVIF PF14069.6 gi|154151417|ref|YP_001405035.1| - 0.45 10.3 2.9 20 5.0 0.9 2.6 2 0 0 2 2 2 0 Stage VI sporulation protein F SRP54 PF00448.22 gi|154151418|ref|YP_001405036.1| - 1.4e-65 220.6 1.5 2e-65 220.1 1.5 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|154151418|ref|YP_001405036.1| - 9.2e-10 38.6 1.4 2.1e-09 37.5 1.4 1.6 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_17 PF13207.6 gi|154151418|ref|YP_001405036.1| - 1.1e-06 29.1 0.2 2e-06 28.3 0.2 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|154151418|ref|YP_001405036.1| - 5.3e-06 25.8 0.1 9.2e-06 25.1 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|154151418|ref|YP_001405036.1| - 0.00013 21.8 1.7 0.00013 21.8 1.7 1.9 2 1 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|154151418|ref|YP_001405036.1| - 0.00014 21.8 0.0 0.00024 21.0 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase cobW PF02492.19 gi|154151418|ref|YP_001405036.1| - 0.00061 19.4 0.5 0.0011 18.6 0.5 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|154151418|ref|YP_001405036.1| - 0.0011 19.1 0.0 0.0021 18.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain KdpD PF02702.17 gi|154151418|ref|YP_001405036.1| - 0.0016 18.0 0.2 0.0031 17.0 0.2 1.4 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain NTPase_1 PF03266.15 gi|154151418|ref|YP_001405036.1| - 0.0019 18.2 2.6 0.013 15.4 2.6 2.1 1 1 0 1 1 1 1 NTPase AAA PF00004.29 gi|154151418|ref|YP_001405036.1| - 0.0035 17.8 0.3 0.0076 16.7 0.3 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|154151418|ref|YP_001405036.1| - 0.0044 17.1 0.7 0.011 15.8 0.4 1.8 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.6 gi|154151418|ref|YP_001405036.1| - 0.0046 17.3 0.3 0.0046 17.3 0.3 1.8 2 1 0 2 2 2 1 AAA ATPase domain MeaB PF03308.16 gi|154151418|ref|YP_001405036.1| - 0.0063 15.5 0.2 0.013 14.5 0.2 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|154151418|ref|YP_001405036.1| - 0.0084 16.4 1.2 0.028 14.7 0.7 2.2 2 1 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|154151418|ref|YP_001405036.1| - 0.0089 15.7 0.5 0.056 13.1 0.3 2.1 2 0 0 2 2 2 1 Thymidylate kinase AAA_7 PF12775.7 gi|154151418|ref|YP_001405036.1| - 0.044 13.3 0.3 0.087 12.3 0.1 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|154151418|ref|YP_001405036.1| - 0.055 13.2 0.9 0.092 12.5 0.9 1.5 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|154151418|ref|YP_001405036.1| - 0.063 12.3 0.4 0.13 11.3 0.2 1.7 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|154151418|ref|YP_001405036.1| - 0.069 13.5 0.9 0.16 12.3 0.9 1.7 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|154151418|ref|YP_001405036.1| - 0.091 12.8 0.1 0.24 11.4 0.0 1.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|154151418|ref|YP_001405036.1| - 0.12 12.6 0.4 0.41 10.9 0.4 1.8 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|154151418|ref|YP_001405036.1| - 0.22 10.9 0.0 0.44 10.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MMR_HSR1 PF01926.23 gi|154151418|ref|YP_001405036.1| - 0.56 10.3 2.2 1.3 9.2 1.0 2.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase Prefoldin PF02996.17 gi|154151419|ref|YP_001405037.1| - 2.9e-20 72.4 5.7 3.9e-20 72.0 5.7 1.3 1 0 0 1 1 1 1 Prefoldin subunit betaPIX_CC PF16523.5 gi|154151419|ref|YP_001405037.1| - 0.00038 20.2 1.2 0.00066 19.4 1.2 1.4 1 0 0 1 1 1 1 betaPIX coiled coil Seryl_tRNA_N PF02403.22 gi|154151419|ref|YP_001405037.1| - 0.0014 18.8 0.8 0.0027 17.9 0.1 1.7 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Prefoldin_2 PF01920.20 gi|154151419|ref|YP_001405037.1| - 0.0016 18.4 6.8 0.01 15.8 2.4 2.2 2 0 0 2 2 2 1 Prefoldin subunit Snapin_Pallidin PF14712.6 gi|154151419|ref|YP_001405037.1| - 0.0082 16.5 2.9 0.0092 16.4 0.6 2.0 2 0 0 2 2 2 1 Snapin/Pallidin NPV_P10 PF05531.12 gi|154151419|ref|YP_001405037.1| - 0.092 13.2 0.6 0.2 12.1 0.6 1.5 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Nsp1_C PF05064.13 gi|154151419|ref|YP_001405037.1| - 0.1 12.4 3.4 0.24 11.2 0.6 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region Sec16 PF12932.7 gi|154151419|ref|YP_001405037.1| - 0.12 13.0 0.4 0.23 12.1 0.2 1.6 2 0 0 2 2 2 0 Vesicle coat trafficking protein Sec16 mid-region Matrilin_ccoil PF10393.9 gi|154151419|ref|YP_001405037.1| - 0.16 11.9 1.4 0.39 10.6 0.6 2.0 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Spc7 PF08317.11 gi|154151419|ref|YP_001405037.1| - 0.32 9.9 7.9 0.84 8.5 1.8 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|154151419|ref|YP_001405037.1| - 0.34 11.3 2.4 0.41 11.1 1.4 1.7 2 0 0 2 2 1 0 Flagella accessory protein C (FlaC) ZapB PF06005.12 gi|154151419|ref|YP_001405037.1| - 0.38 11.2 8.4 0.19 12.2 2.0 2.3 2 0 0 2 2 2 0 Cell division protein ZapB APG6_N PF17675.1 gi|154151419|ref|YP_001405037.1| - 0.53 10.8 10.3 1.3 9.5 2.2 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF4140 PF13600.6 gi|154151419|ref|YP_001405037.1| - 0.67 10.4 4.0 0.39 11.2 0.6 2.0 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) TSC22 PF01166.18 gi|154151419|ref|YP_001405037.1| - 1.5 9.2 4.4 0.87 9.9 1.1 2.3 2 2 0 2 2 2 0 TSC-22/dip/bun family MFS_1 PF07690.16 gi|154151420|ref|YP_001405038.1| - 8.1e-53 179.6 53.2 8.1e-53 179.6 53.2 2.7 1 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|154151420|ref|YP_001405038.1| - 7.5e-10 38.3 38.6 1.1e-06 27.9 17.6 2.6 2 1 0 2 2 2 2 Sugar (and other) transporter CBP_BcsF PF11120.8 gi|154151420|ref|YP_001405038.1| - 1.4 9.1 0.0 1.4 9.1 0.0 4.1 6 0 0 6 6 6 0 Cellulose biosynthesis protein BcsF Ribosomal_L18A PF01775.17 gi|154151421|ref|YP_001405039.1| - 8.9e-08 32.3 0.1 2.2e-07 31.0 0.1 1.6 1 1 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A DUF3721 PF12518.8 gi|154151421|ref|YP_001405039.1| - 0.057 13.3 0.8 0.095 12.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function eIF-6 PF01912.18 gi|154151422|ref|YP_001405040.1| - 8.8e-68 227.6 3.2 1e-67 227.4 3.2 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|154151423|ref|YP_001405041.1| - 1.2e-15 57.5 1.3 1.4e-15 57.2 1.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|154151424|ref|YP_001405042.1| - 2.3e-20 71.9 11.1 2.7e-20 71.7 11.1 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Diphthami_syn_2 PF01902.17 gi|154151425|ref|YP_001405043.1| - 0.0014 18.2 0.0 0.017 14.7 0.0 2.5 1 1 1 2 2 2 1 Diphthamide synthase DUF1421 PF07223.11 gi|154151425|ref|YP_001405043.1| - 0.15 11.9 0.2 1.3 9.0 0.0 2.5 3 0 0 3 3 3 0 UBA-like domain (DUF1421) dsDNA_bind PF01984.20 gi|154151426|ref|YP_001405044.1| - 3.1e-31 107.9 15.3 3.4e-31 107.8 15.3 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain BAR_3 PF16746.5 gi|154151426|ref|YP_001405044.1| - 0.0088 15.8 2.9 0.011 15.5 2.9 1.1 1 0 0 1 1 1 1 BAR domain of APPL family DUF3069 PF11269.8 gi|154151426|ref|YP_001405044.1| - 1.4 9.2 6.3 0.57 10.4 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3069) Ribosomal_S19e PF01090.19 gi|154151427|ref|YP_001405045.1| - 3.1e-57 192.1 0.0 5.1e-57 191.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S19e HemN_C PF06969.16 gi|154151427|ref|YP_001405045.1| - 0.02 14.9 0.0 0.042 13.9 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain GntR PF00392.21 gi|154151427|ref|YP_001405045.1| - 0.089 12.4 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PaaX PF07848.12 gi|154151427|ref|YP_001405045.1| - 0.14 12.4 0.2 0.33 11.2 0.0 1.6 2 0 0 2 2 2 0 PaaX-like protein CRS1_YhbY PF01985.21 gi|154151428|ref|YP_001405046.1| - 1.5e-10 41.1 0.4 1.8e-10 40.8 0.4 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.16 gi|154151429|ref|YP_001405047.1| - 9.8e-14 51.4 0.1 1.4e-13 50.9 0.1 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF4674 PF15719.5 gi|154151429|ref|YP_001405047.1| - 0.38 10.8 4.8 5.7 6.9 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4674) Formyl_trans_N PF00551.19 gi|154151430|ref|YP_001405048.1| - 4.1e-58 196.1 0.0 4.7e-58 195.9 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase Peripla_BP_4 PF13407.6 gi|154151430|ref|YP_001405048.1| - 0.05 13.2 0.1 0.11 12.1 0.1 1.6 1 1 0 1 1 1 0 Periplasmic binding protein domain SH3_18 PF18354.1 gi|154151430|ref|YP_001405048.1| - 0.085 12.9 0.1 0.87 9.7 0.0 2.1 2 0 0 2 2 2 0 CarS bacterial SH3 domain DUF126 PF01989.16 gi|154151430|ref|YP_001405048.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.8 1 0 0 1 1 1 0 Aconitase X swivel domain SASP PF00269.20 gi|154151430|ref|YP_001405048.1| - 0.16 12.0 0.1 8.8 6.4 0.1 2.3 2 0 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type DUF21 PF01595.20 gi|154151431|ref|YP_001405049.1| - 5.2e-53 179.4 1.4 7.2e-53 178.9 1.4 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|154151431|ref|YP_001405049.1| - 1e-20 73.5 0.1 3.1e-20 72.0 0.0 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|154151431|ref|YP_001405049.1| - 5.4e-15 55.6 4.3 4.1e-07 30.3 0.2 2.4 2 0 0 2 2 2 2 CBS domain ATPase_2 PF01637.18 gi|154151431|ref|YP_001405049.1| - 0.1 12.5 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AP_endonuc_2 PF01261.24 gi|154151432|ref|YP_001405050.1| - 1.7e-21 76.7 0.0 2.2e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Exonuc_VII_L PF02601.15 gi|154151433|ref|YP_001405051.1| - 6.8e-78 262.3 0.6 7.9e-70 235.8 1.2 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|154151433|ref|YP_001405051.1| - 1.3e-24 86.3 0.0 2.3e-24 85.4 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|154151433|ref|YP_001405051.1| - 1.1e-05 25.4 0.1 2.4e-05 24.2 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain SSB PF00436.25 gi|154151433|ref|YP_001405051.1| - 0.17 11.9 0.0 0.36 10.9 0.0 1.5 1 0 0 1 1 1 0 Single-strand binding protein family Exonuc_VII_S PF02609.16 gi|154151434|ref|YP_001405052.1| - 5.2e-20 71.2 4.5 5.8e-20 71.1 4.5 1.0 1 0 0 1 1 1 1 Exonuclease VII small subunit Nsp1_C PF05064.13 gi|154151434|ref|YP_001405052.1| - 0.014 15.2 0.1 0.032 14.0 0.1 1.6 1 1 0 1 1 1 0 Nsp1-like C-terminal region DASH_Duo1 PF08651.10 gi|154151434|ref|YP_001405052.1| - 0.031 14.0 0.1 0.042 13.6 0.1 1.1 1 0 0 1 1 1 0 DASH complex subunit Duo1 KxDL PF10241.9 gi|154151434|ref|YP_001405052.1| - 0.047 14.0 0.1 0.057 13.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein Sec34 PF04136.15 gi|154151434|ref|YP_001405052.1| - 0.06 13.2 0.2 0.076 12.9 0.2 1.2 1 0 0 1 1 1 0 Sec34-like family FH2 PF02181.23 gi|154151434|ref|YP_001405052.1| - 0.07 12.2 0.1 0.28 10.3 0.0 1.4 1 1 0 1 1 1 0 Formin Homology 2 Domain DUF5082 PF16888.5 gi|154151434|ref|YP_001405052.1| - 0.11 12.8 1.6 1.1 9.6 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) DUF371 PF04027.13 gi|154151435|ref|YP_001405053.1| - 5.5e-47 159.1 0.1 6.2e-47 158.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) HupH_C PF04809.13 gi|154151435|ref|YP_001405053.1| - 0.074 12.8 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 HupH hydrogenase expression protein, C-terminal conserved region DUF2387 PF09526.10 gi|154151436|ref|YP_001405054.1| - 0.0018 18.4 1.6 0.0022 18.1 0.2 1.8 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) Ribosomal_S27e PF01667.17 gi|154151436|ref|YP_001405054.1| - 0.0041 16.8 0.3 0.0089 15.7 0.3 1.6 1 0 0 1 1 1 1 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.11 gi|154151436|ref|YP_001405054.1| - 0.016 15.1 3.4 0.025 14.5 2.2 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain eIF-5_eIF-2B PF01873.17 gi|154151436|ref|YP_001405054.1| - 0.028 14.3 0.9 0.055 13.3 0.9 1.5 1 0 0 1 1 1 0 Domain found in IF2B/IF5 DUF35_N PF12172.8 gi|154151436|ref|YP_001405054.1| - 0.037 13.9 0.5 0.037 13.9 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) AbbA_antirepres PF14156.6 gi|154151436|ref|YP_001405054.1| - 0.045 13.6 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 Antirepressor AbbA Ribosomal_S26e PF01283.19 gi|154151436|ref|YP_001405054.1| - 0.074 13.5 0.7 0.12 12.8 0.1 1.6 2 0 0 2 2 2 0 Ribosomal protein S26e Prok-RING_1 PF14446.6 gi|154151436|ref|YP_001405054.1| - 0.078 12.9 2.3 0.18 11.8 2.3 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.6 gi|154151436|ref|YP_001405054.1| - 0.079 12.9 5.4 0.22 11.5 5.4 1.8 1 0 0 1 1 1 0 Nudix N-terminal zf-DNL PF05180.12 gi|154151436|ref|YP_001405054.1| - 0.12 12.4 1.9 0.42 10.6 1.9 2.0 1 0 0 1 1 1 0 DNL zinc finger Zn_Tnp_IS1595 PF12760.7 gi|154151436|ref|YP_001405054.1| - 0.18 11.8 1.8 0.41 10.7 1.8 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|154151436|ref|YP_001405054.1| - 0.22 11.9 3.0 0.2 12.1 0.8 2.0 2 0 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.6 gi|154151436|ref|YP_001405054.1| - 0.76 9.8 6.1 6 6.9 5.3 2.8 2 1 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|154151436|ref|YP_001405054.1| - 0.81 9.6 3.7 1.2 9.1 1.8 2.2 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|154151436|ref|YP_001405054.1| - 1.4 8.4 4.5 13 5.4 0.3 2.8 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|154151436|ref|YP_001405054.1| - 2.7 8.2 6.6 26 5.0 0.4 2.4 1 1 0 2 2 2 0 Zinc ribbon domain FKBP_C PF00254.28 gi|154151437|ref|YP_001405055.1| - 0.045 14.1 0.0 0.14 12.5 0.0 1.8 1 1 0 1 1 1 0 FKBP-type peptidyl-prolyl cis-trans isomerase MG2 PF01835.19 gi|154151437|ref|YP_001405055.1| - 0.078 13.4 0.0 0.16 12.5 0.0 1.5 1 0 0 1 1 1 0 MG2 domain DUF5487 PF17589.2 gi|154151437|ref|YP_001405055.1| - 0.13 12.5 0.0 0.3 11.4 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5487) CBS PF00571.28 gi|154151438|ref|YP_001405056.1| - 2e-18 66.6 4.2 3.4e-09 37.0 0.2 2.9 2 1 1 3 3 3 2 CBS domain ParBc PF02195.18 gi|154151438|ref|YP_001405056.1| - 6.3e-13 48.8 0.3 1.5e-12 47.6 0.3 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|154151438|ref|YP_001405056.1| - 0.0057 16.8 0.0 0.03 14.4 0.0 2.1 2 1 0 2 2 2 1 Putative ParB-like nuclease NTP_transferase PF00483.23 gi|154151439|ref|YP_001405057.1| - 1.1e-45 156.2 0.0 1.3e-45 155.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|154151439|ref|YP_001405057.1| - 2.6e-19 68.1 36.0 4.7e-06 26.1 1.4 5.0 1 1 6 7 7 7 6 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|154151439|ref|YP_001405057.1| - 4.5e-09 36.9 0.0 6.2e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|154151439|ref|YP_001405057.1| - 5e-06 26.2 18.4 0.00025 20.7 1.5 4.3 3 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|154151439|ref|YP_001405057.1| - 0.0016 17.5 1.5 0.003 16.6 1.3 1.4 1 1 0 1 1 1 1 L-fucokinase Bactofilin PF04519.13 gi|154151439|ref|YP_001405057.1| - 0.016 15.5 1.8 0.034 14.4 0.8 2.0 1 1 0 1 1 1 0 Polymer-forming cytoskeletal DUF4954 PF16314.5 gi|154151439|ref|YP_001405057.1| - 0.14 10.3 3.9 0.21 9.7 3.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) GATase_3 PF07685.14 gi|154151441|ref|YP_001405059.1| - 1.8e-49 168.0 0.0 2.4e-49 167.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|154151441|ref|YP_001405059.1| - 2.7e-19 69.5 0.0 4.3e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|154151441|ref|YP_001405059.1| - 3.6e-18 66.1 0.1 3.1e-17 63.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain GATase PF00117.28 gi|154151441|ref|YP_001405059.1| - 0.0066 16.2 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|154151441|ref|YP_001405059.1| - 0.014 15.1 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S51 MobB PF03205.14 gi|154151441|ref|YP_001405059.1| - 0.053 13.4 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF1611 PF07755.11 gi|154151441|ref|YP_001405059.1| - 0.06 12.6 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain Peptidase_C26 PF07722.13 gi|154151441|ref|YP_001405059.1| - 0.12 12.2 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 SUI1 PF01253.22 gi|154151442|ref|YP_001405060.1| - 1.4e-21 76.8 0.1 1.7e-21 76.5 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|154151442|ref|YP_001405060.1| - 0.0024 17.6 0.5 0.003 17.3 0.5 1.1 1 0 0 1 1 1 1 DTW domain Img2 PF05046.14 gi|154151442|ref|YP_001405060.1| - 0.048 14.0 0.1 0.084 13.2 0.1 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) VbhA PF18495.1 gi|154151442|ref|YP_001405060.1| - 0.079 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Antitoxin VbhA ELL PF10390.9 gi|154151442|ref|YP_001405060.1| - 0.11 11.9 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase II elongation factor ELL T2SSF PF00482.23 gi|154151443|ref|YP_001405061.1| - 8.8e-18 64.5 0.1 8.8e-18 64.5 0.1 2.2 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F Fig1 PF12351.8 gi|154151443|ref|YP_001405061.1| - 0.0084 16.1 0.3 0.0084 16.1 0.3 2.2 2 0 0 2 2 2 1 Ca2+ regulator and membrane fusion protein Fig1 PIG-F PF06699.11 gi|154151443|ref|YP_001405061.1| - 0.033 14.4 1.8 0.047 13.9 0.6 1.7 2 0 0 2 2 2 0 GPI biosynthesis protein family Pig-F T2SSF PF00482.23 gi|154151444|ref|YP_001405062.1| - 1.2e-16 60.8 1.1 1.2e-16 60.8 1.1 2.4 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F PEPcase_2 PF14010.6 gi|154151444|ref|YP_001405062.1| - 0.017 13.6 0.0 0.021 13.3 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase SWIRM PF04433.17 gi|154151445|ref|YP_001405063.1| - 0.0042 17.4 0.0 0.0043 17.4 0.0 1.1 1 0 0 1 1 1 1 SWIRM domain T2SSE PF00437.20 gi|154151446|ref|YP_001405064.1| - 3e-44 151.1 0.0 4.8e-44 150.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|154151446|ref|YP_001405064.1| - 0.0084 15.8 0.0 0.023 14.4 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain PYRIN PF02758.16 gi|154151446|ref|YP_001405064.1| - 0.081 13.1 0.8 2.3 8.4 0.1 3.2 4 0 0 4 4 4 0 PAAD/DAPIN/Pyrin domain AAA_23 PF13476.6 gi|154151446|ref|YP_001405064.1| - 0.98 9.9 4.2 0.69 10.4 0.1 2.6 2 1 0 2 2 2 0 AAA domain Robl_LC7 PF03259.17 gi|154151447|ref|YP_001405065.1| - 0.00029 20.5 0.0 0.00058 19.6 0.0 1.5 1 0 0 1 1 1 1 Roadblock/LC7 domain DUF4388 PF14332.6 gi|154151447|ref|YP_001405065.1| - 0.0021 18.3 0.0 0.0036 17.5 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4388) Robl_LC7 PF03259.17 gi|154151448|ref|YP_001405066.1| - 1.4e-16 60.1 0.3 1.9e-16 59.6 0.3 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|154151448|ref|YP_001405066.1| - 0.00036 20.3 0.0 0.00044 20.1 0.0 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting DUF1192 PF06698.11 gi|154151448|ref|YP_001405066.1| - 0.035 14.2 0.5 0.097 12.7 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) DUF4388 PF14332.6 gi|154151449|ref|YP_001405067.1| - 0.035 14.4 0.0 0.056 13.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4388) CbiA PF01656.23 gi|154151451|ref|YP_001405069.1| - 3.8e-22 78.7 0.4 5e-22 78.3 0.4 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|154151451|ref|YP_001405069.1| - 2.4e-18 66.5 6.9 1.7e-17 63.7 6.9 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|154151451|ref|YP_001405069.1| - 6.1e-18 65.3 0.3 9.7e-18 64.7 0.3 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|154151451|ref|YP_001405069.1| - 1.7e-10 40.8 4.0 1.5e-09 37.7 4.0 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|154151451|ref|YP_001405069.1| - 5e-09 36.0 0.0 8e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|154151451|ref|YP_001405069.1| - 2.2e-06 27.1 1.5 2.4e-05 23.8 1.5 2.0 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|154151451|ref|YP_001405069.1| - 2.9e-06 27.3 6.6 2.7e-05 24.1 6.6 2.4 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|154151451|ref|YP_001405069.1| - 5.8e-05 22.4 1.3 5.8e-05 22.4 1.3 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase CLP1_P PF16575.5 gi|154151451|ref|YP_001405069.1| - 0.0018 18.1 0.5 0.0039 17.0 0.1 1.7 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 gi|154151451|ref|YP_001405069.1| - 0.0033 16.8 0.4 0.0053 16.1 0.4 1.2 1 0 0 1 1 1 1 VirC1 protein APS_kinase PF01583.20 gi|154151451|ref|YP_001405069.1| - 0.0094 15.9 0.3 0.017 15.0 0.3 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase Response_reg PF00072.24 gi|154151452|ref|YP_001405070.1| - 3.1e-21 75.6 0.1 6.2e-21 74.7 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|154151452|ref|YP_001405070.1| - 7e-08 32.7 0.0 1.2e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|154151452|ref|YP_001405070.1| - 0.00065 19.9 0.0 0.0011 19.1 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|154151452|ref|YP_001405070.1| - 0.0049 16.8 0.0 0.02 14.9 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|154151452|ref|YP_001405070.1| - 0.016 15.2 0.0 0.041 13.9 0.0 1.7 1 0 0 1 1 1 0 PAS domain V4R PF02830.18 gi|154151453|ref|YP_001405071.1| - 1.7e-23 82.4 9.5 1.4e-12 47.4 2.4 2.3 2 0 0 2 2 2 2 V4R domain DUF2507 PF10702.9 gi|154151453|ref|YP_001405071.1| - 0.04 13.9 0.3 0.097 12.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2507) ATC_hydrolase PF14196.6 gi|154151453|ref|YP_001405071.1| - 1 10.1 5.2 20 5.9 1.6 3.0 2 1 0 2 2 2 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase bMG6 PF17962.1 gi|154151454|ref|YP_001405072.1| - 0.036 14.2 0.2 0.25 11.5 0.1 2.0 1 1 1 2 2 2 0 Bacterial macroglobulin domain 6 HepII_C PF18675.1 gi|154151454|ref|YP_001405072.1| - 0.066 13.3 0.1 1.5 8.9 0.1 2.4 2 0 0 2 2 2 0 Heparinase II C-terminal domain Peptidase_C25_C PF03785.14 gi|154151454|ref|YP_001405072.1| - 0.099 12.5 0.0 0.25 11.2 0.0 1.8 1 0 0 1 1 1 0 Peptidase family C25, C terminal ig-like domain Arc_PepC_II PF06847.11 gi|154151455|ref|YP_001405073.1| - 1.3e-28 99.3 0.3 4.6e-28 97.6 0.1 2.1 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|154151455|ref|YP_001405073.1| - 1.5e-07 31.8 18.2 1.2e-05 25.7 2.5 2.9 2 1 0 2 2 2 2 Type IV leader peptidase family DUF3886 PF13025.6 gi|154151455|ref|YP_001405073.1| - 0.48 10.7 3.4 0.82 9.9 3.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3886) Phage_holin_2_4 PF16082.5 gi|154151455|ref|YP_001405073.1| - 0.83 9.4 0.0 0.83 9.4 0.0 2.3 3 0 0 3 3 3 0 Bacteriophage holin family, superfamily II-like PRA-CH PF01502.18 gi|154151456|ref|YP_001405074.1| - 4.1e-34 116.3 1.2 5e-34 116.0 1.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Auxin_inducible PF02519.14 gi|154151456|ref|YP_001405074.1| - 0.089 13.0 0.1 8.6 6.6 0.0 2.1 1 1 1 2 2 2 0 Auxin responsive protein DUF3239 PF11580.8 gi|154151456|ref|YP_001405074.1| - 0.18 12.1 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3239) PBP_like_2 PF12849.7 gi|154151457|ref|YP_001405075.1| - 7.9e-38 130.7 13.4 7.9e-38 130.7 13.4 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|154151457|ref|YP_001405075.1| - 3.2e-20 72.1 0.4 5e-20 71.4 0.4 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|154151457|ref|YP_001405075.1| - 5.1e-11 42.8 1.7 5.1e-11 42.8 1.7 2.6 1 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|154151457|ref|YP_001405075.1| - 0.00018 21.6 2.3 0.037 14.0 2.3 2.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|154151457|ref|YP_001405075.1| - 0.1 12.0 0.0 0.25 10.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|154151457|ref|YP_001405075.1| - 0.11 11.8 0.0 0.35 10.2 0.0 1.7 2 0 0 2 2 2 0 LysR substrate binding domain LacAB_rpiB PF02502.18 gi|154151457|ref|YP_001405075.1| - 0.74 9.8 5.1 0.34 10.9 2.2 1.8 1 1 1 2 2 2 0 Ribose/Galactose Isomerase DUF1180 PF06679.12 gi|154151457|ref|YP_001405075.1| - 1.6 9.1 11.3 3 8.3 11.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) MGC-24 PF05283.11 gi|154151457|ref|YP_001405075.1| - 2.5 8.6 8.7 6.2 7.3 8.7 1.6 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin BPD_transp_1 PF00528.22 gi|154151458|ref|YP_001405076.1| - 3.5e-50 170.3 53.9 5.4e-27 94.7 13.9 3.6 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|154151459|ref|YP_001405077.1| - 1.2e-29 103.6 0.0 1.6e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154151459|ref|YP_001405077.1| - 1.9e-11 44.3 0.0 5.5e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|154151459|ref|YP_001405077.1| - 8.9e-08 31.8 0.0 8.5e-06 25.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|154151459|ref|YP_001405077.1| - 1.8e-05 24.7 0.1 4.3e-05 23.5 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|154151459|ref|YP_001405077.1| - 6.3e-05 22.8 0.0 0.00011 22.1 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|154151459|ref|YP_001405077.1| - 7e-05 22.5 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|154151459|ref|YP_001405077.1| - 0.00029 21.1 0.1 0.00056 20.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|154151459|ref|YP_001405077.1| - 0.00085 19.9 0.0 0.0015 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|154151459|ref|YP_001405077.1| - 0.00089 19.7 0.0 0.0013 19.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|154151459|ref|YP_001405077.1| - 0.0061 16.5 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|154151459|ref|YP_001405077.1| - 0.0069 16.1 0.0 0.5 10.1 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|154151459|ref|YP_001405077.1| - 0.013 15.1 0.1 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|154151459|ref|YP_001405077.1| - 0.041 13.3 0.1 0.43 10.0 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein AAA_13 PF13166.6 gi|154151459|ref|YP_001405077.1| - 0.056 12.1 0.0 0.15 10.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|154151459|ref|YP_001405077.1| - 0.057 13.1 0.1 0.26 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|154151459|ref|YP_001405077.1| - 0.066 13.6 0.0 1.1 9.6 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Adeno_IVa2 PF02456.15 gi|154151459|ref|YP_001405077.1| - 0.088 11.6 0.0 0.31 9.8 0.0 1.8 2 0 0 2 2 2 0 Adenovirus IVa2 protein ATPase_2 PF01637.18 gi|154151459|ref|YP_001405077.1| - 0.098 12.6 0.0 0.71 9.7 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|154151459|ref|YP_001405077.1| - 0.11 12.3 0.0 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|154151459|ref|YP_001405077.1| - 0.13 12.4 0.1 0.27 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|154151459|ref|YP_001405077.1| - 0.14 12.4 0.0 0.36 11.1 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_18 PF13238.6 gi|154151459|ref|YP_001405077.1| - 0.15 12.6 0.0 0.43 11.1 0.0 1.7 2 0 0 2 2 1 0 AAA domain QSOX_Trx1 PF18108.1 gi|154151459|ref|YP_001405077.1| - 0.16 12.1 0.1 0.4 10.9 0.0 1.8 2 0 0 2 2 1 0 QSOX Trx-like domain PhoU PF01895.19 gi|154151460|ref|YP_001405078.1| - 9.3e-33 112.6 7.6 3.9e-17 62.5 1.4 2.1 2 0 0 2 2 2 2 PhoU domain Cupredoxin_1 PF13473.6 gi|154151461|ref|YP_001405079.1| - 4.4e-08 33.2 0.0 5.6e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|154151461|ref|YP_001405079.1| - 0.00025 21.5 0.2 0.0013 19.1 0.2 1.9 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF4352 PF11611.8 gi|154151462|ref|YP_001405080.1| - 2.7e-21 76.1 0.0 3.5e-21 75.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) DUF5067 PF16729.5 gi|154151462|ref|YP_001405080.1| - 0.00099 19.0 0.1 0.0015 18.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5067) DUF3309 PF11752.8 gi|154151462|ref|YP_001405080.1| - 0.47 10.6 7.8 0.16 12.0 3.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3309) DUF1035 PF06281.12 gi|154151462|ref|YP_001405080.1| - 1.2 9.2 7.2 0.27 11.3 2.7 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1035) T2SSE PF00437.20 gi|154151463|ref|YP_001405081.1| - 5.8e-13 48.5 0.1 9.9e-13 47.8 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|154151463|ref|YP_001405081.1| - 3.2e-05 24.4 0.0 7.8e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 PIN domain IstB_IS21 PF01695.17 gi|154151463|ref|YP_001405081.1| - 0.00028 20.7 0.0 0.00055 19.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|154151463|ref|YP_001405081.1| - 0.00053 19.9 0.0 0.01 15.8 0.0 2.5 1 1 0 2 2 2 1 NTPase AAA_16 PF13191.6 gi|154151463|ref|YP_001405081.1| - 0.0045 17.4 0.0 0.0098 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain KH_1 PF00013.29 gi|154151463|ref|YP_001405081.1| - 0.0072 16.1 0.9 0.025 14.4 0.9 2.0 1 0 0 1 1 1 1 KH domain AAA_5 PF07728.14 gi|154151463|ref|YP_001405081.1| - 0.008 16.2 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|154151463|ref|YP_001405081.1| - 0.0093 15.7 0.0 0.027 14.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|154151463|ref|YP_001405081.1| - 0.012 14.9 0.0 0.029 13.7 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.12 gi|154151463|ref|YP_001405081.1| - 0.016 15.2 0.1 0.029 14.3 0.1 1.4 1 0 0 1 1 1 0 NACHT domain PIN_4 PF13638.6 gi|154151463|ref|YP_001405081.1| - 0.016 15.5 0.0 0.031 14.6 0.0 1.5 1 0 0 1 1 1 0 PIN domain AAA PF00004.29 gi|154151463|ref|YP_001405081.1| - 0.017 15.5 0.0 0.041 14.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KH_2 PF07650.17 gi|154151463|ref|YP_001405081.1| - 0.019 14.8 2.3 0.079 12.8 2.3 2.0 1 0 0 1 1 1 0 KH domain AAA_25 PF13481.6 gi|154151463|ref|YP_001405081.1| - 0.032 13.8 0.2 0.09 12.3 0.1 1.8 1 1 1 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|154151463|ref|YP_001405081.1| - 0.036 13.8 0.0 0.076 12.7 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.27 gi|154151463|ref|YP_001405081.1| - 0.047 14.2 0.0 0.14 12.7 0.0 1.9 1 0 0 1 1 1 0 ABC transporter Thymidylate_kin PF02223.17 gi|154151463|ref|YP_001405081.1| - 0.051 13.3 0.0 0.16 11.6 0.0 1.9 1 1 1 2 2 2 0 Thymidylate kinase Mg_chelatase PF01078.21 gi|154151463|ref|YP_001405081.1| - 0.051 12.9 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI KH_4 PF13083.6 gi|154151463|ref|YP_001405081.1| - 0.058 13.3 0.4 0.22 11.4 0.4 2.0 1 0 0 1 1 1 0 KH domain CbiA PF01656.23 gi|154151463|ref|YP_001405081.1| - 0.064 13.3 0.1 0.17 11.9 0.1 1.7 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.6 gi|154151463|ref|YP_001405081.1| - 0.064 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF853 PF05872.12 gi|154151463|ref|YP_001405081.1| - 0.073 11.6 0.0 0.17 10.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AAA_28 PF13521.6 gi|154151463|ref|YP_001405081.1| - 0.074 13.3 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|154151463|ref|YP_001405081.1| - 0.081 12.4 0.1 0.24 10.9 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|154151463|ref|YP_001405081.1| - 0.084 13.4 0.0 0.18 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|154151463|ref|YP_001405081.1| - 0.11 12.7 0.0 0.33 11.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|154151463|ref|YP_001405081.1| - 0.14 12.2 0.0 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain tRNA-synt_1 PF00133.22 gi|154151464|ref|YP_001405082.1| - 1.1e-49 169.3 0.1 7.6e-44 150.0 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|154151464|ref|YP_001405082.1| - 5.2e-23 81.7 0.3 1.3e-22 80.4 0.3 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|154151464|ref|YP_001405082.1| - 3.4e-22 78.8 0.4 6.9e-10 38.2 0.0 3.9 2 2 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|154151464|ref|YP_001405082.1| - 2.3e-06 27.3 0.1 5e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|154151464|ref|YP_001405082.1| - 3.1e-06 26.8 0.0 0.041 13.2 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|154151464|ref|YP_001405082.1| - 6.2e-05 22.1 0.0 0.066 12.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1b PF00579.25 gi|154151464|ref|YP_001405082.1| - 0.061 12.6 0.1 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) CxxCxxCC PF03692.15 gi|154151465|ref|YP_001405083.1| - 1.6e-09 38.3 1.8 4.9e-09 36.8 1.8 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF5611 PF18446.1 gi|154151466|ref|YP_001405084.1| - 1.7e-31 109.1 0.2 1.9e-31 108.9 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) PAC2 PF09754.9 gi|154151467|ref|YP_001405085.1| - 2.7e-40 138.7 0.0 3.1e-40 138.4 0.0 1.1 1 0 0 1 1 1 1 PAC2 family ArAE_1_C PF11728.8 gi|154151467|ref|YP_001405085.1| - 0.084 12.9 0.2 0.13 12.3 0.2 1.2 1 0 0 1 1 1 0 Putative aromatic acid exporter C-terminal domain DUF473 PF04322.12 gi|154151468|ref|YP_001405086.1| - 5.1e-42 142.5 0.0 5.8e-42 142.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) KH_2 PF07650.17 gi|154151469|ref|YP_001405087.1| - 3.5e-20 71.6 1.7 5.9e-14 51.6 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|154151469|ref|YP_001405087.1| - 1.4e-13 50.7 0.4 8.1e-13 48.3 0.0 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|154151469|ref|YP_001405087.1| - 5.7e-07 29.3 0.0 0.048 13.5 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|154151469|ref|YP_001405087.1| - 6e-05 22.8 0.4 0.0021 17.8 0.0 2.4 1 1 1 2 2 2 1 KH domain Ribosomal_L7Ae PF01248.26 gi|154151470|ref|YP_001405088.1| - 4.8e-16 58.3 0.0 6.6e-16 57.8 0.0 1.2 1 1 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 gi|154151471|ref|YP_001405089.1| - 4.4e-55 187.0 2.0 6.5e-55 186.4 2.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Phage_XkdX PF09693.10 gi|154151471|ref|YP_001405089.1| - 0.011 15.7 0.1 0.026 14.5 0.1 1.6 1 0 0 1 1 1 0 Phage uncharacterised protein (Phage_XkdX) DUF2357 PF09823.9 gi|154151471|ref|YP_001405089.1| - 0.078 12.2 0.1 9.2 5.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2357) RNA_pol_Rpb1_1 PF04997.12 gi|154151472|ref|YP_001405090.1| - 3.6e-100 335.3 0.6 4.3e-100 335.1 0.0 1.4 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|154151472|ref|YP_001405090.1| - 1.7e-66 223.5 0.0 2.7e-66 222.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|154151472|ref|YP_001405090.1| - 7.1e-32 109.6 0.0 1.3e-31 108.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|154151472|ref|YP_001405090.1| - 5.2e-30 104.5 0.0 1.1e-29 103.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|154151472|ref|YP_001405090.1| - 5.2e-28 98.2 0.1 1e-27 97.2 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 LIM PF00412.22 gi|154151472|ref|YP_001405090.1| - 0.033 14.4 0.3 0.033 14.4 0.3 2.5 3 0 0 3 3 3 0 LIM domain DUF4062 PF13271.6 gi|154151472|ref|YP_001405090.1| - 0.082 13.3 0.0 0.21 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4062) FYVE PF01363.21 gi|154151472|ref|YP_001405090.1| - 3.1 8.0 6.8 0.54 10.4 0.9 2.4 2 1 0 2 2 2 0 FYVE zinc finger zf-ribbon_3 PF13248.6 gi|154151472|ref|YP_001405090.1| - 5.4 6.6 8.6 1.3 8.6 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.8 gi|154151472|ref|YP_001405090.1| - 5.7 6.9 6.3 9.4 6.2 0.1 3.3 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNA_pol_Rpb2_6 PF00562.28 gi|154151473|ref|YP_001405091.1| - 1.1e-130 436.3 0.0 1.4e-130 435.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|154151473|ref|YP_001405091.1| - 1e-30 106.0 0.5 1.9e-30 105.1 0.5 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|154151473|ref|YP_001405091.1| - 4.3e-19 68.6 0.1 9.3e-19 67.5 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|154151473|ref|YP_001405091.1| - 6.8e-11 42.6 0.8 2.5e-10 40.8 0.8 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Auto_anti-p27 PF06677.12 gi|154151473|ref|YP_001405091.1| - 0.18 12.0 2.3 0.34 11.1 2.3 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|154151473|ref|YP_001405091.1| - 1 8.9 2.4 6.6 6.3 2.4 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding DUF1451 PF07295.11 gi|154151473|ref|YP_001405091.1| - 2.3 8.2 3.9 0.77 9.8 1.0 1.6 2 0 0 2 2 2 0 Zinc-ribbon containing domain RNA_pol_Rpb2_1 PF04563.15 gi|154151474|ref|YP_001405092.1| - 4.7e-50 169.9 0.1 5.8e-50 169.6 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|154151474|ref|YP_001405092.1| - 2.2e-26 91.8 0.0 4.9e-26 90.7 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|154151474|ref|YP_001405092.1| - 3.2e-18 66.0 0.3 1.7e-17 63.7 0.3 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb5_C PF01191.19 gi|154151475|ref|YP_001405093.1| - 7.8e-31 105.8 0.5 8.7e-31 105.6 0.5 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3562 PF12085.8 gi|154151475|ref|YP_001405093.1| - 0.033 13.8 0.2 0.047 13.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) MetOD2 PF18548.1 gi|154151476|ref|YP_001405094.1| - 1e-27 96.1 1.4 1.5e-27 95.5 1.4 1.3 1 0 0 1 1 1 1 Metanogen output domain 2 Response_reg PF00072.24 gi|154151476|ref|YP_001405094.1| - 2.9e-24 85.4 0.0 4.7e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PSD2 PF07624.11 gi|154151476|ref|YP_001405094.1| - 0.14 11.9 0.2 0.34 10.7 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1585) MetOD2 PF18548.1 gi|154151477|ref|YP_001405095.1| - 2.3e-33 114.2 1.2 3.3e-33 113.6 1.2 1.2 1 0 0 1 1 1 1 Metanogen output domain 2 Response_reg PF00072.24 gi|154151477|ref|YP_001405095.1| - 5.2e-24 84.6 0.2 1.3e-23 83.3 0.0 1.7 2 0 0 2 2 2 1 Response regulator receiver domain Robl_LC7 PF03259.17 gi|154151478|ref|YP_001405096.1| - 6.5e-07 29.0 0.2 8.7e-07 28.6 0.2 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain DUF89 PF01937.19 gi|154151480|ref|YP_001405098.1| - 2.1e-47 161.8 0.0 2.4e-47 161.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 PFK PF00365.20 gi|154151481|ref|YP_001405099.1| - 5.1e-105 350.9 4.8 6e-105 350.6 4.8 1.0 1 0 0 1 1 1 1 Phosphofructokinase PEP-utilizers PF00391.23 gi|154151481|ref|YP_001405099.1| - 0.057 13.1 1.9 0.33 10.7 0.1 2.9 3 0 0 3 3 3 0 PEP-utilising enzyme, mobile domain DAGK_cat PF00781.24 gi|154151481|ref|YP_001405099.1| - 0.058 13.0 0.5 0.13 11.9 0.3 1.8 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Radical_SAM PF04055.21 gi|154151481|ref|YP_001405099.1| - 0.069 13.5 0.0 0.26 11.6 0.0 1.9 1 1 0 1 1 1 0 Radical SAM superfamily Peptidase_M50 PF02163.22 gi|154151482|ref|YP_001405100.1| - 7.6e-20 71.2 1.5 3e-19 69.3 1.5 1.9 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|154151482|ref|YP_001405100.1| - 1e-10 41.8 0.0 1.6e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|154151482|ref|YP_001405100.1| - 1.6e-07 31.0 0.1 2.5e-07 30.4 0.1 1.3 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|154151482|ref|YP_001405100.1| - 0.00051 20.3 0.0 0.0009 19.5 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Tricorn_PDZ PF14685.6 gi|154151482|ref|YP_001405100.1| - 0.023 14.7 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 Tricorn protease PDZ domain Epiglycanin_C PF14654.6 gi|154151482|ref|YP_001405100.1| - 1.7 8.8 5.5 6.5 6.9 0.2 2.5 2 0 0 2 2 2 0 Mucin, catalytic, TM and cytoplasmic tail region RNase_HII PF01351.18 gi|154151483|ref|YP_001405101.1| - 1.5e-44 152.2 0.0 1.8e-44 152.0 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII HTH_38 PF13936.6 gi|154151483|ref|YP_001405101.1| - 0.067 13.0 0.1 0.21 11.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain TrkA_N PF02254.18 gi|154151484|ref|YP_001405102.1| - 1.8e-30 105.6 0.3 2.6e-30 105.0 0.3 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|154151484|ref|YP_001405102.1| - 4.4e-14 52.1 0.4 3.5e-13 49.2 0.1 2.3 2 1 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|154151484|ref|YP_001405102.1| - 8.6e-07 29.4 0.1 1.6e-06 28.5 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|154151484|ref|YP_001405102.1| - 9.2e-07 29.2 0.0 1.3e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|154151484|ref|YP_001405102.1| - 3.9e-06 27.3 0.4 1.6e-05 25.4 0.2 2.2 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.25 gi|154151484|ref|YP_001405102.1| - 5.6e-05 22.7 0.1 9.5e-05 21.9 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_2 PF03446.15 gi|154151484|ref|YP_001405102.1| - 9.6e-05 22.6 0.1 0.00028 21.1 0.0 1.8 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.6 gi|154151484|ref|YP_001405102.1| - 0.00014 21.9 0.4 0.00028 20.9 0.4 1.6 1 1 0 1 1 1 1 NAD(P)H-binding XdhC_C PF13478.6 gi|154151484|ref|YP_001405102.1| - 0.0012 19.3 0.0 0.0018 18.8 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain ApbA PF02558.16 gi|154151484|ref|YP_001405102.1| - 0.0019 17.9 0.1 0.13 11.9 0.0 2.6 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|154151484|ref|YP_001405102.1| - 0.005 16.7 0.0 0.0083 16.0 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|154151484|ref|YP_001405102.1| - 0.01 16.2 0.1 0.019 15.3 0.1 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|154151484|ref|YP_001405102.1| - 0.014 15.0 0.2 0.021 14.4 0.2 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase UDPG_MGDP_dh_N PF03721.14 gi|154151484|ref|YP_001405102.1| - 0.016 14.8 0.2 0.024 14.2 0.2 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3Beta_HSD PF01073.19 gi|154151484|ref|YP_001405102.1| - 0.051 12.6 0.3 0.072 12.1 0.3 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DAO PF01266.24 gi|154151484|ref|YP_001405102.1| - 0.075 12.6 0.1 0.14 11.7 0.1 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase ADH_zinc_N PF00107.26 gi|154151484|ref|YP_001405102.1| - 0.092 12.7 0.0 13 5.8 0.0 2.3 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Epimerase PF01370.21 gi|154151484|ref|YP_001405102.1| - 0.094 12.2 0.1 0.13 11.7 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|154151484|ref|YP_001405102.1| - 0.099 12.0 0.1 0.16 11.3 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KR PF08659.10 gi|154151484|ref|YP_001405102.1| - 0.11 12.4 0.4 0.23 11.4 0.2 1.4 1 1 0 1 1 1 0 KR domain PglD_N PF17836.1 gi|154151484|ref|YP_001405102.1| - 0.18 12.5 1.1 0.52 11.0 0.3 2.1 2 0 0 2 2 2 0 PglD N-terminal domain FAD_binding_3 PF01494.19 gi|154151485|ref|YP_001405103.1| - 1.4e-15 57.4 2.6 8.4e-07 28.6 0.2 2.7 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|154151485|ref|YP_001405103.1| - 2e-10 40.6 2.8 1.3e-08 34.6 1.1 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|154151485|ref|YP_001405103.1| - 4.8e-10 39.1 2.3 1.1e-07 31.3 1.6 2.8 2 1 1 3 3 3 1 FAD binding domain DAO PF01266.24 gi|154151485|ref|YP_001405103.1| - 7.2e-09 35.7 6.4 2.2e-05 24.2 1.3 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|154151485|ref|YP_001405103.1| - 2.4e-08 33.4 0.1 8.6e-06 25.0 0.2 2.3 2 1 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|154151485|ref|YP_001405103.1| - 1.4e-07 30.6 0.7 2.2e-07 29.9 0.7 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|154151485|ref|YP_001405103.1| - 5.5e-07 29.1 0.5 1.4e-06 27.8 0.5 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|154151485|ref|YP_001405103.1| - 7.4e-07 29.3 0.7 7.3e-06 26.1 0.5 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|154151485|ref|YP_001405103.1| - 5.5e-06 25.5 0.2 0.051 12.4 0.1 2.5 2 1 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 gi|154151485|ref|YP_001405103.1| - 0.00011 21.5 0.6 0.00028 20.2 0.1 1.9 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|154151485|ref|YP_001405103.1| - 0.00013 21.2 1.9 0.00013 21.2 1.9 1.6 2 1 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|154151485|ref|YP_001405103.1| - 0.0029 16.9 0.7 0.0051 16.1 0.7 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|154151485|ref|YP_001405103.1| - 0.0029 16.9 0.2 0.0055 16.0 0.2 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|154151485|ref|YP_001405103.1| - 0.063 13.8 0.2 0.18 12.4 0.2 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AIRC PF00731.20 gi|154151485|ref|YP_001405103.1| - 0.078 12.6 0.8 3 7.4 0.0 2.4 2 0 0 2 2 2 0 AIR carboxylase Fer4 PF00037.27 gi|154151486|ref|YP_001405104.1| - 3.7e-13 48.7 16.5 3.7e-07 29.7 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154151486|ref|YP_001405104.1| - 1.4e-08 35.5 11.9 0.00044 21.1 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|154151486|ref|YP_001405104.1| - 1.1e-07 31.4 17.3 5e-05 23.1 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|154151486|ref|YP_001405104.1| - 2.5e-07 30.5 15.7 0.00024 21.0 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|154151486|ref|YP_001405104.1| - 6.9e-07 29.3 14.8 1.7e-06 28.0 14.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|154151486|ref|YP_001405104.1| - 1.4e-06 28.7 17.1 6e-05 23.5 17.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154151486|ref|YP_001405104.1| - 3.7e-06 27.0 28.0 0.00023 21.2 16.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154151486|ref|YP_001405104.1| - 1.6e-05 24.9 14.7 5.7e-05 23.2 14.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|154151486|ref|YP_001405104.1| - 0.0022 18.5 13.4 0.028 15.0 2.7 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154151486|ref|YP_001405104.1| - 0.0022 18.4 14.1 0.025 15.0 2.8 2.1 1 1 2 3 3 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|154151486|ref|YP_001405104.1| - 0.0049 17.7 24.2 0.089 13.8 5.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|154151486|ref|YP_001405104.1| - 0.0092 16.4 19.2 0.034 14.7 3.3 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|154151486|ref|YP_001405104.1| - 0.02 15.4 15.1 0.047 14.2 3.2 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|154151486|ref|YP_001405104.1| - 0.13 12.5 15.6 0.092 13.0 2.5 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|154151486|ref|YP_001405104.1| - 0.65 10.8 15.8 2.9 8.7 4.3 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|154151486|ref|YP_001405104.1| - 0.75 10.7 12.6 0.37 11.7 0.9 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|154151486|ref|YP_001405104.1| - 5 7.3 10.7 6.2 7.0 0.4 2.9 2 2 1 3 3 3 0 Divergent 4Fe-4S mono-cluster Gln-synt_C PF00120.24 gi|154151487|ref|YP_001405105.1| - 1e-137 458.8 0.0 1.2e-137 458.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|154151487|ref|YP_001405105.1| - 1.2e-26 92.3 0.1 3.1e-26 90.9 0.1 1.8 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain PHP_C PF13263.6 gi|154151488|ref|YP_001405106.1| - 2.9e-05 23.7 0.0 6.6e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|154151488|ref|YP_001405106.1| - 0.061 13.6 0.0 0.23 11.7 0.0 2.2 1 1 0 1 1 1 0 PHP domain Response_reg PF00072.24 gi|154151489|ref|YP_001405107.1| - 9.1e-22 77.4 0.1 2.6e-21 75.9 0.1 1.8 2 0 0 2 2 2 1 Response regulator receiver domain TPR_2 PF07719.17 gi|154151489|ref|YP_001405107.1| - 7.4e-21 72.5 0.5 7.4e-07 28.8 0.0 5.1 5 1 1 6 6 5 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|154151489|ref|YP_001405107.1| - 1.9e-20 71.8 0.0 3.9e-06 26.5 0.0 4.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154151489|ref|YP_001405107.1| - 1.7e-19 69.2 0.0 4.7e-11 42.2 0.0 3.8 3 0 0 3 3 3 2 TPR repeat PAS_9 PF13426.7 gi|154151489|ref|YP_001405107.1| - 1.5e-17 63.7 0.0 3.6e-17 62.5 0.0 1.7 1 0 0 1 1 1 1 PAS domain TPR_17 PF13431.6 gi|154151489|ref|YP_001405107.1| - 3.3e-16 58.4 0.1 2.6e-05 24.3 0.0 4.8 5 0 0 5 5 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154151489|ref|YP_001405107.1| - 1.3e-15 56.2 0.0 0.00081 19.4 0.0 5.0 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154151489|ref|YP_001405107.1| - 1.4e-15 57.6 0.1 8.2e-11 42.4 0.0 2.7 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154151489|ref|YP_001405107.1| - 1.2e-11 44.4 0.0 0.00012 22.6 0.0 3.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154151489|ref|YP_001405107.1| - 7.2e-11 42.2 0.0 0.00022 21.5 0.0 3.6 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154151489|ref|YP_001405107.1| - 9.6e-11 42.0 0.0 0.00015 22.2 0.0 3.6 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154151489|ref|YP_001405107.1| - 8.7e-10 38.6 0.0 4e-08 33.3 0.1 2.6 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|154151489|ref|YP_001405107.1| - 2.8e-08 33.9 0.0 0.28 11.9 0.0 4.8 4 0 0 4 4 4 2 Tetratricopeptide repeat PAS PF00989.25 gi|154151489|ref|YP_001405107.1| - 8.4e-08 32.2 0.0 0.00014 21.8 0.0 2.5 2 0 0 2 2 2 2 PAS fold TPR_7 PF13176.6 gi|154151489|ref|YP_001405107.1| - 6.2e-07 29.0 0.0 0.18 11.9 0.0 3.9 3 1 1 4 4 3 2 Tetratricopeptide repeat PAS_4 PF08448.10 gi|154151489|ref|YP_001405107.1| - 6.4e-06 26.4 0.0 9.3e-05 22.6 0.0 2.3 1 1 0 1 1 1 1 PAS fold PAS_7 PF12860.7 gi|154151489|ref|YP_001405107.1| - 0.064 13.4 0.0 0.28 11.3 0.0 2.2 1 1 0 1 1 1 0 PAS fold TPR_10 PF13374.6 gi|154151489|ref|YP_001405107.1| - 0.1 12.5 3.2 19 5.3 0.0 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|154151489|ref|YP_001405107.1| - 0.11 12.7 0.0 2.1 8.7 0.0 2.6 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 PAS_8 PF13188.7 gi|154151489|ref|YP_001405107.1| - 0.14 12.2 0.1 0.88 9.7 0.0 2.3 2 0 0 2 2 2 0 PAS domain MLTR_LBD PF17765.1 gi|154151489|ref|YP_001405107.1| - 0.17 12.0 0.0 0.34 11.0 0.0 1.4 1 0 0 1 1 1 0 MmyB-like transcription regulator ligand binding domain PAC2 PF09754.9 gi|154151490|ref|YP_001405108.1| - 4.3e-50 170.7 0.0 5e-50 170.5 0.0 1.0 1 0 0 1 1 1 1 PAC2 family NAD_binding_10 PF13460.6 gi|154151490|ref|YP_001405108.1| - 0.01 15.8 0.0 0.029 14.3 0.0 1.7 1 0 0 1 1 1 0 NAD(P)H-binding Nop10p PF04135.12 gi|298206422|ref|YP_003717809.1| - 4.5e-20 71.4 0.0 4.8e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Prim_Zn_Ribbon PF08273.12 gi|298206422|ref|YP_003717809.1| - 0.014 15.6 1.5 0.05 13.9 1.5 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase EIF_2_alpha PF07541.12 gi|154151491|ref|YP_001405109.1| - 2.2e-19 69.6 0.1 4e-19 68.8 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|154151491|ref|YP_001405109.1| - 7e-12 45.5 0.1 1.8e-11 44.2 0.1 1.7 1 0 0 1 1 1 1 S1 RNA binding domain Ribosomal_S27e PF01667.17 gi|154151492|ref|YP_001405110.1| - 4.5e-26 90.3 1.3 4.9e-26 90.2 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.10 gi|154151492|ref|YP_001405110.1| - 0.0048 17.0 0.8 0.007 16.5 0.8 1.3 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|154151492|ref|YP_001405110.1| - 0.011 15.2 2.4 0.017 14.7 2.4 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|154151492|ref|YP_001405110.1| - 0.026 14.5 0.3 0.029 14.4 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA eIF-5_eIF-2B PF01873.17 gi|154151492|ref|YP_001405110.1| - 0.033 14.1 1.6 0.041 13.8 1.6 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 Zn_Tnp_IS1595 PF12760.7 gi|154151492|ref|YP_001405110.1| - 0.035 14.1 0.6 0.045 13.7 0.6 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|154151492|ref|YP_001405110.1| - 0.039 13.4 0.9 6.7 6.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_6 PF14599.6 gi|154151492|ref|YP_001405110.1| - 0.042 13.8 0.9 0.059 13.4 0.9 1.2 1 0 0 1 1 1 0 Zinc-ribbon Sgf11 PF08209.11 gi|154151492|ref|YP_001405110.1| - 0.057 13.0 1.9 0.36 10.4 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) TFIIS_C PF01096.18 gi|154151492|ref|YP_001405110.1| - 0.087 12.7 3.8 3.5 7.6 3.9 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zf-C2H2 PF00096.26 gi|154151492|ref|YP_001405110.1| - 0.1 13.1 1.4 6.9 7.3 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_4 PF13717.6 gi|154151492|ref|YP_001405110.1| - 1.2 9.1 5.2 2.5 8.1 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_L44 PF00935.19 gi|154151493|ref|YP_001405111.1| - 9.2e-25 86.9 6.1 1.1e-24 86.7 6.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|154151493|ref|YP_001405111.1| - 0.008 16.6 3.1 0.043 14.3 1.2 2.3 2 0 0 2 2 2 1 Ribosomal protein L33 zf-LITAF-like PF10601.9 gi|154151493|ref|YP_001405111.1| - 0.03 14.6 2.1 0.18 12.1 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|154151493|ref|YP_001405111.1| - 0.035 14.3 3.8 0.86 9.8 0.4 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn_ribbon_SprT PF17283.2 gi|154151493|ref|YP_001405111.1| - 0.14 12.1 5.5 0.43 10.5 0.9 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Elf1 PF05129.13 gi|154151493|ref|YP_001405111.1| - 1.2 9.2 5.6 79 3.4 5.0 2.2 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DNA_primase_S PF01896.19 gi|154151495|ref|YP_001405113.1| - 8.4e-19 68.3 0.0 3.1e-18 66.4 0.0 1.8 1 1 0 1 1 1 1 DNA primase small subunit Radical_SAM_C PF16199.5 gi|154151496|ref|YP_001405114.1| - 2.6e-24 85.0 0.1 6.7e-24 83.7 0.0 1.8 2 0 0 2 2 2 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|154151496|ref|YP_001405114.1| - 3.8e-20 72.9 0.0 1.4e-19 71.1 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|154151496|ref|YP_001405114.1| - 4.2e-06 27.0 0.2 1.6e-05 25.1 0.2 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|154151496|ref|YP_001405114.1| - 0.002 18.1 0.1 0.01 15.7 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain UPF0058 PF01893.16 gi|154151497|ref|YP_001405115.1| - 1.6e-13 50.7 0.5 1.7e-13 50.7 0.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 ADP_ribosyl_GH PF03747.14 gi|154151498|ref|YP_001405116.1| - 2.7e-44 152.1 8.7 9.6e-44 150.3 8.7 1.7 1 1 0 1 1 1 1 ADP-ribosylglycohydrolase C_GCAxxG_C_C PF09719.10 gi|154151498|ref|YP_001405116.1| - 0.0041 17.4 0.3 0.0041 17.4 0.3 1.8 2 0 0 2 2 2 1 Putative redox-active protein (C_GCAxxG_C_C) UPF0179 PF03684.13 gi|154151499|ref|YP_001405117.1| - 3.4e-48 163.1 4.6 3.8e-48 162.9 4.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Asp_decarbox PF02261.16 gi|154151499|ref|YP_001405117.1| - 0.073 13.0 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 Aspartate decarboxylase Fe-ADH_2 PF13685.6 gi|154151500|ref|YP_001405118.1| - 2.8e-67 227.1 3.1 3.5e-67 226.7 3.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|154151500|ref|YP_001405118.1| - 2.5e-22 79.2 3.5 3.9e-22 78.6 3.5 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|154151500|ref|YP_001405118.1| - 2.4e-08 33.5 0.3 1.2e-07 31.2 0.3 1.9 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF63 PF01889.17 gi|154151501|ref|YP_001405119.1| - 4.8e-101 338.5 26.3 5.4e-101 338.4 26.3 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF1230 PF06799.11 gi|154151501|ref|YP_001405119.1| - 1.3 9.1 5.0 0.39 10.8 1.7 1.8 2 0 0 2 2 2 0 Conserved in the green lineage and diatoms 27 SpoIIM PF01944.17 gi|154151502|ref|YP_001405120.1| - 5.8e-34 117.4 20.6 6.9e-34 117.1 20.6 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M EI24 PF07264.11 gi|154151502|ref|YP_001405120.1| - 0.54 10.5 9.8 0.97 9.6 9.8 1.4 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) tRNA-synt_2b PF00587.25 gi|154151503|ref|YP_001405121.1| - 1e-27 97.3 0.0 1.4e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|154151503|ref|YP_001405121.1| - 1.5e-12 47.5 0.0 2.9e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|154151503|ref|YP_001405121.1| - 1.4e-10 41.2 0.2 7.4e-10 38.9 0.0 2.2 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal TIR_2 PF13676.6 gi|154151503|ref|YP_001405121.1| - 0.0054 17.3 0.0 0.024 15.3 0.0 2.1 2 0 0 2 2 2 1 TIR domain FlgD_ig PF13860.6 gi|154151504|ref|YP_001405122.1| - 7.4e-05 22.5 2.3 0.013 15.4 0.5 2.6 2 0 0 2 2 2 2 FlgD Ig-like domain CarboxypepD_reg PF13620.6 gi|154151504|ref|YP_001405122.1| - 0.004 17.4 4.9 1.4 9.2 0.3 2.9 2 1 0 2 2 2 2 Carboxypeptidase regulatory-like domain Big_6 PF17936.1 gi|154151504|ref|YP_001405122.1| - 0.0062 16.8 2.7 0.0085 16.3 0.1 2.4 3 0 0 3 3 3 1 Bacterial Ig domain Gmad2 PF10648.9 gi|154151504|ref|YP_001405122.1| - 0.018 15.3 1.1 0.039 14.2 0.1 2.1 3 0 0 3 3 3 0 Immunoglobulin-like domain of bacterial spore germination Big_7 PF17957.1 gi|154151504|ref|YP_001405122.1| - 0.11 13.3 9.4 0.85 10.4 1.1 2.6 2 0 0 2 2 2 0 Bacterial Ig domain CARDB PF07705.11 gi|154151504|ref|YP_001405122.1| - 0.16 12.3 8.5 0.2 12.0 1.4 3.0 2 1 0 3 3 3 0 CARDB Y_Y_Y PF07495.13 gi|154151504|ref|YP_001405122.1| - 3.9 7.5 7.7 31 4.6 0.1 4.0 4 1 1 5 5 5 0 Y_Y_Y domain C1_1 PF00130.22 gi|154151505|ref|YP_001405123.1| - 0.028 14.3 7.6 1.2 9.1 0.6 2.5 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C3HC4_3 PF13920.6 gi|154151505|ref|YP_001405123.1| - 0.23 11.4 4.3 0.55 10.1 1.4 2.5 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.7 gi|154151505|ref|YP_001405123.1| - 0.29 11.2 7.3 1.3 9.1 1.3 3.1 3 1 0 3 3 3 0 Double zinc ribbon HypA PF01155.19 gi|154151505|ref|YP_001405123.1| - 0.34 10.9 1.5 2.7 8.0 0.9 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|154151505|ref|YP_001405123.1| - 1.7 8.7 6.8 3.1 7.8 1.0 2.4 2 1 0 2 2 2 0 zinc-ribbons DUF2256 PF10013.9 gi|154151505|ref|YP_001405123.1| - 3.5 7.8 8.1 2.9 8.1 0.4 3.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-RRN7 PF11781.8 gi|154151505|ref|YP_001405123.1| - 8.4 6.2 12.6 3 7.6 0.3 3.3 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 ParA PF10609.9 gi|154151507|ref|YP_001405125.1| - 1.1e-100 336.2 0.2 1.3e-100 336.0 0.2 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|154151507|ref|YP_001405125.1| - 1.6e-16 60.5 0.0 3.3e-16 59.5 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|154151507|ref|YP_001405125.1| - 3.8e-12 46.5 0.1 2.1e-11 44.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|154151507|ref|YP_001405125.1| - 4.2e-08 32.8 0.0 6.6e-08 32.2 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|154151507|ref|YP_001405125.1| - 6.2e-08 32.2 1.0 4.8e-07 29.2 0.2 2.4 2 1 1 3 3 3 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|154151507|ref|YP_001405125.1| - 6.5e-05 22.5 0.9 0.00021 20.8 0.1 2.1 2 1 1 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|154151507|ref|YP_001405125.1| - 0.0013 18.6 2.2 0.43 10.4 0.5 2.5 2 1 0 2 2 2 2 AAA domain APS_kinase PF01583.20 gi|154151507|ref|YP_001405125.1| - 0.0023 17.9 0.0 0.0032 17.4 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase CBP_BcsQ PF06564.12 gi|154151507|ref|YP_001405125.1| - 0.0025 17.3 0.1 0.012 15.1 0.1 1.8 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|154151507|ref|YP_001405125.1| - 0.0031 17.3 0.0 0.0048 16.7 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|154151507|ref|YP_001405125.1| - 0.0082 15.2 0.1 0.014 14.4 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|154151507|ref|YP_001405125.1| - 0.0085 15.7 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.11 gi|154151507|ref|YP_001405125.1| - 0.0094 15.3 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein SRP54 PF00448.22 gi|154151507|ref|YP_001405125.1| - 0.04 13.5 0.1 0.072 12.7 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|154151507|ref|YP_001405125.1| - 0.069 12.9 0.1 0.82 9.5 0.1 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain PhnA_Zn_Ribbon PF08274.12 gi|154151507|ref|YP_001405125.1| - 0.11 12.5 0.1 0.11 12.5 0.1 2.1 2 1 0 2 2 2 0 PhnA Zinc-Ribbon NB-ARC PF00931.22 gi|154151507|ref|YP_001405125.1| - 0.13 11.5 0.1 0.21 10.7 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|154151507|ref|YP_001405125.1| - 0.16 12.5 0.1 0.25 11.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain HD PF01966.22 gi|154151508|ref|YP_001405126.1| - 1.5e-11 44.6 0.0 2.9e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 HD domain HD_assoc PF13286.6 gi|154151508|ref|YP_001405126.1| - 1.4e-08 35.2 0.1 6.7e-08 33.0 0.1 2.2 1 1 0 1 1 1 1 Phosphohydrolase-associated domain Pkinase PF00069.25 gi|154151509|ref|YP_001405127.1| - 2.4e-40 138.6 0.0 3.4e-40 138.1 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain NosD PF05048.13 gi|154151509|ref|YP_001405127.1| - 5.9e-37 127.2 14.0 8.8e-37 126.6 14.0 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Pkinase_Tyr PF07714.17 gi|154151509|ref|YP_001405127.1| - 2e-29 102.6 0.0 2.7e-29 102.2 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Beta_helix PF13229.6 gi|154151509|ref|YP_001405127.1| - 1.4e-13 51.0 15.3 3e-13 49.9 15.3 1.4 1 0 0 1 1 1 1 Right handed beta helix region APH PF01636.23 gi|154151509|ref|YP_001405127.1| - 0.0043 17.0 0.0 0.0071 16.3 0.0 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family Kinase-like PF14531.6 gi|154151509|ref|YP_001405127.1| - 0.15 11.3 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Kinase-like FHA PF00498.26 gi|154151510|ref|YP_001405128.1| - 4e-10 39.9 0.0 6.9e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 FHA domain HTH_5 PF01022.20 gi|154151510|ref|YP_001405128.1| - 0.00012 21.9 0.3 0.00039 20.2 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|154151510|ref|YP_001405128.1| - 0.00016 21.6 0.0 0.00052 20.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Yop-YscD_cpl PF16697.5 gi|154151510|ref|YP_001405128.1| - 0.0011 19.3 0.0 0.52 10.7 0.0 2.3 2 0 0 2 2 2 2 Inner membrane component of T3SS, cytoplasmic domain HTH_45 PF14947.6 gi|154151510|ref|YP_001405128.1| - 0.0024 17.8 0.0 0.0099 15.8 0.0 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix TrmB PF01978.19 gi|154151510|ref|YP_001405128.1| - 0.0063 16.4 0.1 0.016 15.1 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Dimerisation2 PF16864.5 gi|154151510|ref|YP_001405128.1| - 0.0085 16.1 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain DUF2250 PF10007.9 gi|154151510|ref|YP_001405128.1| - 0.053 13.6 0.1 0.1 12.7 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF3986 PF13143.6 gi|154151512|ref|YP_001405130.1| - 0.12 13.4 0.1 0.27 12.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3986) Capsid_NCLDV PF04451.12 gi|154151512|ref|YP_001405130.1| - 0.25 11.1 5.0 0.43 10.4 0.4 2.3 2 0 0 2 2 2 0 Large eukaryotic DNA virus major capsid protein DUF5612 PF18462.1 gi|154151513|ref|YP_001405131.1| - 2.2e-70 235.0 4.8 3.4e-70 234.4 4.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|154151513|ref|YP_001405131.1| - 5.1e-07 29.3 0.7 1.5e-06 27.9 0.3 2.1 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|154151513|ref|YP_001405131.1| - 4.3e-06 27.2 0.1 0.00013 22.5 0.0 2.3 2 0 0 2 2 2 1 ACT domain Transketolase_C PF02780.20 gi|154151513|ref|YP_001405131.1| - 0.11 12.4 0.5 0.34 10.8 0.5 1.8 1 1 0 1 1 1 0 Transketolase, C-terminal domain Sua5_yciO_yrdC PF01300.18 gi|154151514|ref|YP_001405132.1| - 7.2e-44 149.4 0.0 8.4e-44 149.2 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination NTP_transf_2 PF01909.23 gi|154151515|ref|YP_001405133.1| - 0.00046 20.4 0.0 0.00083 19.6 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain TfuA PF07812.12 gi|154151516|ref|YP_001405134.1| - 8.5e-46 154.6 0.3 2.2e-45 153.2 0.2 1.7 2 0 0 2 2 2 1 TfuA-like protein YcaO PF02624.16 gi|154151517|ref|YP_001405135.1| - 5.2e-93 311.9 0.1 6.6e-93 311.5 0.1 1.1 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding PAS_9 PF13426.7 gi|154151518|ref|YP_001405136.1| - 1.1e-05 25.7 0.0 3.4e-05 24.0 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|154151518|ref|YP_001405136.1| - 0.00055 20.2 0.0 0.016 15.5 0.0 2.2 1 1 0 1 1 1 1 PAS fold PAS PF00989.25 gi|154151518|ref|YP_001405136.1| - 0.0015 18.5 0.0 0.022 14.7 0.0 2.3 1 1 1 2 2 2 1 PAS fold IBP39 PF11422.8 gi|154151518|ref|YP_001405136.1| - 0.03 14.1 0.1 0.046 13.5 0.1 1.3 1 0 0 1 1 1 0 Initiator binding protein 39 kDa PAS_3 PF08447.12 gi|154151518|ref|YP_001405136.1| - 0.14 12.5 0.0 0.89 9.9 0.0 2.2 2 0 0 2 2 2 0 PAS fold DUF1724 PF08350.10 gi|154151519|ref|YP_001405137.1| - 1.5e-21 76.3 0.8 1.5e-21 76.3 0.8 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HxlR PF01638.17 gi|154151519|ref|YP_001405137.1| - 0.017 15.0 0.1 0.041 13.7 0.1 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix UbiA PF01040.18 gi|154151520|ref|YP_001405138.1| - 2.6e-15 56.4 17.2 3.9e-15 55.8 17.2 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family FeS_assembly_P PF01883.19 gi|154151521|ref|YP_001405139.1| - 6.7e-17 61.4 0.6 1.3e-16 60.6 0.6 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Hexapep PF00132.24 gi|154151521|ref|YP_001405139.1| - 1.8e-10 40.1 14.4 7e-06 25.6 2.9 3.2 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|154151521|ref|YP_001405139.1| - 1.1e-05 25.1 18.4 0.00012 21.7 4.2 3.4 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|154151521|ref|YP_001405139.1| - 0.00012 22.4 0.0 0.00025 21.4 0.0 1.5 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal NifU PF01106.17 gi|154151521|ref|YP_001405139.1| - 0.018 15.2 0.2 0.034 14.3 0.2 1.5 1 0 0 1 1 1 0 NifU-like domain PALP PF00291.25 gi|154151522|ref|YP_001405140.1| - 2.6e-69 233.9 0.8 2.9e-69 233.7 0.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|154151522|ref|YP_001405140.1| - 0.0009 19.2 0.5 0.014 15.4 0.1 2.5 2 1 0 2 2 2 1 Zinc-binding dehydrogenase CaKB PF03185.15 gi|154151522|ref|YP_001405140.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Calcium-activated potassium channel, beta subunit DFP PF04127.15 gi|154151522|ref|YP_001405140.1| - 0.17 11.7 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DUF3530 PF12048.8 gi|154151522|ref|YP_001405140.1| - 0.22 10.9 0.0 0.31 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) Aminotran_5 PF00266.19 gi|154151523|ref|YP_001405141.1| - 6.1e-124 413.7 0.0 7e-124 413.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|154151523|ref|YP_001405141.1| - 6.5e-10 38.8 0.0 8.5e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|154151523|ref|YP_001405141.1| - 6.4e-08 32.2 0.0 1.1e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|154151523|ref|YP_001405141.1| - 3.8e-06 26.5 0.0 5.4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|154151523|ref|YP_001405141.1| - 0.00047 18.8 0.0 0.00064 18.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SepSecS PF05889.13 gi|154151523|ref|YP_001405141.1| - 0.16 10.6 0.0 0.27 9.9 0.0 1.4 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS ThiF PF00899.21 gi|154151524|ref|YP_001405142.1| - 4.5e-61 206.3 0.1 7.1e-61 205.7 0.1 1.2 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|154151524|ref|YP_001405142.1| - 7.9e-05 22.7 0.3 0.00056 20.0 0.1 2.1 1 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|154151524|ref|YP_001405142.1| - 0.0008 19.6 0.1 0.0013 19.0 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|154151524|ref|YP_001405142.1| - 0.0011 18.6 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|154151524|ref|YP_001405142.1| - 0.002 18.4 0.1 0.0042 17.3 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|154151524|ref|YP_001405142.1| - 0.0027 18.1 0.2 0.0052 17.2 0.2 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|154151524|ref|YP_001405142.1| - 0.0048 16.8 0.1 0.0093 15.9 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|154151524|ref|YP_001405142.1| - 0.016 14.6 0.2 0.062 12.7 0.1 1.9 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|154151524|ref|YP_001405142.1| - 0.029 13.9 0.4 0.053 13.1 0.4 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase F420_oxidored PF03807.17 gi|154151524|ref|YP_001405142.1| - 0.032 14.8 0.1 0.084 13.5 0.1 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TBP PF00352.21 gi|154151524|ref|YP_001405142.1| - 0.037 14.0 0.0 0.067 13.2 0.0 1.4 1 0 0 1 1 1 0 Transcription factor TFIID (or TATA-binding protein, TBP) Sacchrp_dh_NADP PF03435.18 gi|154151524|ref|YP_001405142.1| - 0.059 13.6 1.9 0.31 11.3 1.9 2.0 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DUF3378 PF11858.8 gi|154151524|ref|YP_001405142.1| - 0.077 13.1 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3378) Arteri_env PF01606.16 gi|154151525|ref|YP_001405143.1| - 0.083 12.8 0.1 0.84 9.5 0.0 1.9 1 1 1 2 2 2 0 Arterivirus envelope protein ThiI PF02568.14 gi|154151526|ref|YP_001405144.1| - 5.2e-62 209.0 0.0 5.8e-62 208.8 0.0 1.0 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|154151526|ref|YP_001405144.1| - 5.1e-07 29.4 0.0 0.00034 20.2 0.0 2.3 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|154151526|ref|YP_001405144.1| - 1.9e-06 26.9 0.0 2.8e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|154151526|ref|YP_001405144.1| - 3.4e-05 23.1 0.0 5e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|154151526|ref|YP_001405144.1| - 0.0028 17.5 0.2 0.088 12.6 0.2 2.2 1 1 0 1 1 1 1 PP-loop family PALP PF00291.25 gi|154151529|ref|YP_001405147.1| - 1.1e-69 235.1 0.0 1.2e-69 235.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CbiG_N PF11760.8 gi|154151529|ref|YP_001405147.1| - 0.037 14.0 0.0 14 5.8 0.0 2.4 2 0 0 2 2 2 0 Cobalamin synthesis G N-terminal Glyco_transf_28 PF03033.20 gi|154151529|ref|YP_001405147.1| - 0.34 10.9 1.3 21 5.1 0.1 2.3 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Cys_Met_Meta_PP PF01053.20 gi|154151530|ref|YP_001405148.1| - 2.2e-147 490.6 0.0 2.5e-147 490.4 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|154151530|ref|YP_001405148.1| - 3.5e-05 23.2 0.0 5.1e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|154151530|ref|YP_001405148.1| - 0.00012 21.1 0.0 0.0013 17.8 0.0 2.2 2 1 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|154151530|ref|YP_001405148.1| - 0.00036 19.9 0.0 0.0011 18.3 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|154151530|ref|YP_001405148.1| - 0.0022 17.4 0.0 0.0062 15.9 0.0 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family tRNA-synt_1e PF01406.19 gi|154151531|ref|YP_001405149.1| - 3.4e-109 364.8 0.0 4.2e-109 364.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|154151531|ref|YP_001405149.1| - 4.6e-21 75.0 0.2 2.1e-10 39.9 0.1 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|154151531|ref|YP_001405149.1| - 2.1e-09 36.2 0.0 7.4e-07 27.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|154151531|ref|YP_001405149.1| - 5e-06 25.7 0.0 3.2e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) DALR_2 PF09190.11 gi|154151531|ref|YP_001405149.1| - 0.00012 22.5 2.5 0.0032 17.9 1.2 3.0 2 1 0 2 2 2 1 DALR domain tRNA-synt_1c PF00749.21 gi|154151531|ref|YP_001405149.1| - 0.013 14.4 0.3 0.097 11.6 0.2 2.5 2 1 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain AsnC_trans_reg PF01037.21 gi|154151532|ref|YP_001405150.1| - 7.1e-06 25.9 0.1 1.1e-05 25.3 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|154151532|ref|YP_001405150.1| - 0.016 15.3 0.1 0.027 14.5 0.1 1.4 1 0 0 1 1 1 0 NapD protein FtsX_ECD PF18075.1 gi|154151532|ref|YP_001405150.1| - 0.069 13.8 0.1 0.14 12.8 0.1 1.5 1 1 0 1 1 1 0 FtsX extracellular domain Cys_Met_Meta_PP PF01053.20 gi|154151533|ref|YP_001405151.1| - 2e-144 480.9 0.0 2.3e-144 480.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|154151533|ref|YP_001405151.1| - 7.2e-13 48.6 0.1 1.1e-12 48.0 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|154151533|ref|YP_001405151.1| - 3.3e-06 26.3 0.1 5.6e-06 25.6 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|154151533|ref|YP_001405151.1| - 3.7e-05 23.1 0.0 5.6e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Met_gamma_lyase PF06838.11 gi|154151533|ref|YP_001405151.1| - 0.0034 16.0 0.5 0.53 8.8 0.2 2.2 2 0 0 2 2 2 2 Methionine gamma-lyase Beta_elim_lyase PF01212.21 gi|154151533|ref|YP_001405151.1| - 0.0077 15.5 0.0 0.032 13.5 0.0 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase Asparaginase_C PF17763.1 gi|154151533|ref|YP_001405151.1| - 0.16 12.2 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain Cys_Met_Meta_PP PF01053.20 gi|154151534|ref|YP_001405152.1| - 1.6e-118 395.6 0.0 1.8e-118 395.4 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|154151534|ref|YP_001405152.1| - 1.4e-12 47.2 0.0 8.8e-10 38.1 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|154151534|ref|YP_001405152.1| - 2.2e-10 40.4 0.9 1.6e-09 37.6 0.2 2.1 1 1 1 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Met_gamma_lyase PF06838.11 gi|154151534|ref|YP_001405152.1| - 0.00033 19.3 0.0 0.001 17.7 0.0 1.7 1 1 0 1 1 1 1 Methionine gamma-lyase Beta_elim_lyase PF01212.21 gi|154151534|ref|YP_001405152.1| - 0.0053 16.1 0.0 0.008 15.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase adh_short_C2 PF13561.6 gi|154151534|ref|YP_001405152.1| - 0.03 13.9 0.0 0.06 12.9 0.0 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase DUF4350 PF14258.6 gi|154151534|ref|YP_001405152.1| - 0.14 12.6 0.0 19 5.8 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) Aminotran_1_2 PF00155.21 gi|154151535|ref|YP_001405153.1| - 5.2e-70 236.4 0.0 5.9e-70 236.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|154151535|ref|YP_001405153.1| - 2.6e-05 22.9 0.0 4e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|154151535|ref|YP_001405153.1| - 9.4e-05 21.5 0.0 0.00029 19.9 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|154151535|ref|YP_001405153.1| - 0.00039 19.8 0.0 0.00054 19.4 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|154151535|ref|YP_001405153.1| - 0.0088 15.4 0.0 0.037 13.3 0.0 1.9 2 1 0 2 2 2 1 Beta-eliminating lyase Aminotran_3 PF00202.21 gi|154151535|ref|YP_001405153.1| - 0.12 11.0 0.0 0.21 10.2 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III Oxidored_nitro PF00148.19 gi|154151536|ref|YP_001405154.1| - 3.6e-74 249.9 0.0 4.2e-74 249.7 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|154151537|ref|YP_001405155.1| - 1.3e-69 234.9 0.0 1.7e-69 234.5 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Peripla_BP_2 PF01497.18 gi|154151537|ref|YP_001405155.1| - 0.033 13.8 0.0 0.072 12.6 0.0 1.6 1 0 0 1 1 1 0 Periplasmic binding protein AA_permease PF00324.21 gi|154151538|ref|YP_001405156.1| - 3.7e-27 95.1 42.7 6.8e-27 94.2 42.7 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|154151538|ref|YP_001405156.1| - 1.6e-23 83.2 51.1 2e-23 82.9 51.1 1.1 1 0 0 1 1 1 1 Amino acid permease DUF2755 PF10954.8 gi|154151538|ref|YP_001405156.1| - 3.9 7.5 6.5 0.47 10.4 0.2 2.8 4 0 0 4 4 4 0 Protein of unknown function (DUF2755) Acetyltransf_1 PF00583.25 gi|154151539|ref|YP_001405157.1| - 2.2e-18 66.6 0.0 2.7e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|154151539|ref|YP_001405157.1| - 2.5e-12 47.0 0.0 3.7e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|154151539|ref|YP_001405157.1| - 5.5e-12 45.7 0.0 7.5e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|154151539|ref|YP_001405157.1| - 1.3e-08 35.0 0.0 1.6e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|154151539|ref|YP_001405157.1| - 2.9e-07 30.8 0.0 3.9e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|154151539|ref|YP_001405157.1| - 0.0027 17.6 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|154151539|ref|YP_001405157.1| - 0.0031 17.2 0.0 0.0064 16.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|154151539|ref|YP_001405157.1| - 0.0033 17.5 0.0 0.009 16.1 0.0 1.7 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 gi|154151539|ref|YP_001405157.1| - 0.012 15.7 0.0 0.037 14.2 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|154151539|ref|YP_001405157.1| - 0.042 14.5 0.0 0.058 14.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Radical_SAM PF04055.21 gi|154151540|ref|YP_001405158.1| - 1.4e-07 32.0 0.0 1.2e-06 29.0 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily AnfO_nitrog PF09582.10 gi|154151541|ref|YP_001405159.1| - 7.4e-58 195.0 0.0 8.4e-58 194.9 0.0 1.0 1 0 0 1 1 1 1 Iron only nitrogenase protein AnfO (AnfO_nitrog) Oxidored_nitro PF00148.19 gi|154151542|ref|YP_001405160.1| - 1e-62 212.2 0.0 1.3e-62 211.9 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|154151543|ref|YP_001405161.1| - 2.8e-69 233.8 0.0 3.7e-69 233.4 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DUF4418 PF14387.6 gi|154151544|ref|YP_001405162.1| - 9e-34 116.2 2.6 1.3e-33 115.7 2.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4418) YtpI PF14007.6 gi|154151544|ref|YP_001405162.1| - 0.061 13.5 5.1 1.9 8.7 0.1 2.8 3 0 0 3 3 3 0 YtpI-like protein Acyl_transf_3 PF01757.22 gi|154151544|ref|YP_001405162.1| - 0.082 11.9 3.1 0.16 11.0 3.1 1.4 1 1 0 1 1 1 0 Acyltransferase family DUF981 PF06168.11 gi|154151544|ref|YP_001405162.1| - 0.2 11.6 5.1 0.28 11.1 0.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF981) DUF202 PF02656.15 gi|154151544|ref|YP_001405162.1| - 0.26 11.7 11.9 0.38 11.2 1.9 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF202) Trp_oprn_chp PF09534.10 gi|154151544|ref|YP_001405162.1| - 1.4 8.7 5.9 8 6.2 5.1 2.4 1 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) FtsX PF02687.21 gi|154151545|ref|YP_001405163.1| - 1.8e-11 44.3 9.8 1.8e-11 44.3 9.8 3.3 4 0 0 4 4 4 1 FtsX-like permease family MacB_PCD PF12704.7 gi|154151545|ref|YP_001405163.1| - 3.2e-08 34.1 0.7 3.2e-08 34.1 0.7 2.2 2 0 0 2 2 2 1 MacB-like periplasmic core domain TMEM125 PF15109.6 gi|154151545|ref|YP_001405163.1| - 1.1 9.7 6.3 9.2 6.6 0.2 2.5 2 0 0 2 2 2 0 TMEM125 protein family ABC_tran PF00005.27 gi|154151546|ref|YP_001405164.1| - 8e-33 113.9 0.0 1e-32 113.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154151546|ref|YP_001405164.1| - 2.1e-09 37.6 2.6 5.9e-05 23.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|154151546|ref|YP_001405164.1| - 1.4e-07 31.2 0.1 1.9e-06 27.5 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|154151546|ref|YP_001405164.1| - 0.0005 19.8 0.3 0.0011 18.6 0.3 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|154151546|ref|YP_001405164.1| - 0.00076 19.3 0.5 0.0023 17.7 0.5 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|154151546|ref|YP_001405164.1| - 0.00076 19.8 0.7 0.11 12.7 0.5 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|154151546|ref|YP_001405164.1| - 0.001 19.5 0.4 0.0021 18.5 0.4 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|154151546|ref|YP_001405164.1| - 0.0016 18.4 0.1 0.0034 17.3 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|154151546|ref|YP_001405164.1| - 0.0016 19.0 0.1 0.0027 18.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|154151546|ref|YP_001405164.1| - 0.0032 17.6 0.0 0.0056 16.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|154151546|ref|YP_001405164.1| - 0.0036 17.1 0.0 0.23 11.2 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein NB-ARC PF00931.22 gi|154151546|ref|YP_001405164.1| - 0.01 15.0 0.1 0.14 11.3 0.2 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_15 PF13175.6 gi|154151546|ref|YP_001405164.1| - 0.012 15.3 0.2 0.81 9.3 0.1 2.0 2 0 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|154151546|ref|YP_001405164.1| - 0.015 15.4 1.4 0.049 13.7 0.6 2.0 1 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|154151546|ref|YP_001405164.1| - 0.025 14.1 0.0 0.1 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|154151546|ref|YP_001405164.1| - 0.026 13.9 0.1 0.041 13.2 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.12 gi|154151546|ref|YP_001405164.1| - 0.035 14.0 0.1 0.077 12.9 0.1 1.5 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|154151546|ref|YP_001405164.1| - 0.037 13.6 0.1 0.058 13.0 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase PF06745.13 gi|154151546|ref|YP_001405164.1| - 0.041 13.2 0.4 2.1 7.7 0.1 2.1 2 0 0 2 2 2 0 KaiC ATPase_2 PF01637.18 gi|154151546|ref|YP_001405164.1| - 0.046 13.6 0.0 0.27 11.1 0.0 1.9 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA PF00004.29 gi|154151546|ref|YP_001405164.1| - 0.049 14.1 0.2 3.5 8.1 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF3987 PF13148.6 gi|154151546|ref|YP_001405164.1| - 0.064 12.3 0.0 0.19 10.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) MobB PF03205.14 gi|154151546|ref|YP_001405164.1| - 0.086 12.7 0.3 0.19 11.7 0.2 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 gi|154151546|ref|YP_001405164.1| - 0.1 11.9 0.3 0.2 10.9 0.2 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_19 PF13245.6 gi|154151546|ref|YP_001405164.1| - 0.15 12.4 0.2 0.36 11.2 0.2 1.7 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|154151546|ref|YP_001405164.1| - 0.16 11.1 0.0 0.16 11.1 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit DehI PF10778.9 gi|154151546|ref|YP_001405164.1| - 0.17 12.0 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Halocarboxylic acid dehydrogenase DehI Fer4_NifH PF00142.18 gi|154151547|ref|YP_001405165.1| - 8.5e-101 336.9 0.0 1.1e-100 336.6 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|154151547|ref|YP_001405165.1| - 5.8e-10 39.3 0.0 1.1e-09 38.4 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|154151547|ref|YP_001405165.1| - 5.1e-09 36.3 0.0 1e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|154151547|ref|YP_001405165.1| - 8.3e-07 28.7 1.6 7e-05 22.4 0.2 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|154151547|ref|YP_001405165.1| - 2.7e-06 26.8 0.1 5.9e-06 25.7 0.1 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 gi|154151547|ref|YP_001405165.1| - 0.0018 17.3 0.1 0.0031 16.6 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|154151547|ref|YP_001405165.1| - 0.0021 17.4 0.0 0.0038 16.6 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_24 PF13479.6 gi|154151547|ref|YP_001405165.1| - 0.0071 16.1 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|154151547|ref|YP_001405165.1| - 0.022 15.1 0.1 0.13 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DUF87 PF01935.17 gi|154151547|ref|YP_001405165.1| - 0.053 13.6 0.4 0.59 10.2 0.1 2.1 2 0 0 2 2 2 0 Helicase HerA, central domain NB-ARC PF00931.22 gi|154151547|ref|YP_001405165.1| - 0.056 12.6 0.4 0.12 11.5 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain NTPase_1 PF03266.15 gi|154151547|ref|YP_001405165.1| - 0.072 13.0 0.2 0.24 11.3 0.1 1.9 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|154151547|ref|YP_001405165.1| - 0.21 12.0 0.3 0.7 10.3 0.1 1.9 2 0 0 2 2 2 0 RNA helicase Oxidored_nitro PF00148.19 gi|154151548|ref|YP_001405166.1| - 3e-67 227.1 0.0 4.2e-67 226.6 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|154151549|ref|YP_001405167.1| - 3.6e-71 240.0 0.0 4.2e-71 239.8 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase ABC_tran PF00005.27 gi|154151550|ref|YP_001405168.1| - 3.3e-30 105.4 0.0 7e-30 104.3 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|154151550|ref|YP_001405168.1| - 1.9e-08 34.5 1.1 0.0016 18.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|154151550|ref|YP_001405168.1| - 5.4e-05 22.8 0.2 0.00013 21.6 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|154151550|ref|YP_001405168.1| - 5.6e-05 22.7 0.2 0.3 10.5 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|154151550|ref|YP_001405168.1| - 0.0077 16.2 0.2 0.016 15.1 0.2 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|154151550|ref|YP_001405168.1| - 0.011 16.2 0.1 0.011 16.2 0.1 2.4 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|154151550|ref|YP_001405168.1| - 0.021 14.4 0.4 0.31 10.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|154151550|ref|YP_001405168.1| - 0.03 14.8 0.1 0.046 14.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|154151550|ref|YP_001405168.1| - 0.038 13.9 0.1 0.07 13.0 0.1 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 gi|154151550|ref|YP_001405168.1| - 0.057 13.8 0.1 0.12 12.7 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|154151550|ref|YP_001405168.1| - 0.13 11.9 0.0 0.36 10.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|154151550|ref|YP_001405168.1| - 0.14 12.1 0.1 0.5 10.2 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea BPD_transp_1 PF00528.22 gi|154151551|ref|YP_001405169.1| - 4.4e-25 88.5 14.9 4.4e-25 88.5 14.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.6 gi|154151552|ref|YP_001405170.1| - 8.2e-13 48.6 0.0 5.9e-12 45.8 0.1 1.9 1 1 1 2 2 2 1 NMT1-like family NMT1 PF09084.11 gi|154151552|ref|YP_001405170.1| - 8.6e-10 38.9 0.0 2.5e-09 37.4 0.0 1.7 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|154151552|ref|YP_001405170.1| - 1.7e-07 31.1 0.1 0.011 15.4 0.0 2.2 2 0 0 2 2 2 2 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_5 PF00496.22 gi|154151552|ref|YP_001405170.1| - 0.0074 15.3 0.0 0.013 14.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4399 PF14347.6 gi|154151553|ref|YP_001405171.1| - 2.2e-07 31.1 0.1 3.4e-07 30.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4399) BiPBP_C PF06832.12 gi|154151553|ref|YP_001405171.1| - 0.0062 16.6 0.3 0.13 12.4 0.3 2.3 1 1 0 1 1 1 1 Penicillin-Binding Protein C-terminus Family Big_7 PF17957.1 gi|154151553|ref|YP_001405171.1| - 0.0065 17.2 8.6 0.14 12.9 8.6 2.6 1 1 0 1 1 1 1 Bacterial Ig domain DUF4968 PF16338.5 gi|154151553|ref|YP_001405171.1| - 0.14 12.5 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4968) CBM_6 PF03422.15 gi|154151553|ref|YP_001405171.1| - 0.53 10.6 3.9 0.17 12.2 1.1 1.6 2 0 0 2 2 2 0 Carbohydrate binding module (family 6) Wzz PF02706.15 gi|154151553|ref|YP_001405171.1| - 1.5 9.1 6.3 5.9 7.3 0.1 2.8 2 1 0 2 2 2 0 Chain length determinant protein FtsX PF02687.21 gi|154151554|ref|YP_001405172.1| - 3e-07 30.8 8.4 3e-07 30.8 8.4 2.9 3 0 0 3 3 3 1 FtsX-like permease family BPD_transp_1 PF00528.22 gi|154151554|ref|YP_001405172.1| - 2 8.1 14.5 0.03 14.1 2.1 2.8 3 0 0 3 3 3 0 Binding-protein-dependent transport system inner membrane component PAS_4 PF08448.10 gi|154151555|ref|YP_001405173.1| - 1.5e-41 141.1 0.0 4.8e-16 59.0 0.0 4.4 4 1 0 4 4 4 4 PAS fold PAS PF00989.25 gi|154151555|ref|YP_001405173.1| - 3.7e-29 101.0 0.0 1.7e-09 37.7 0.0 4.9 4 1 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|154151555|ref|YP_001405173.1| - 2.9e-28 98.2 0.0 3.1e-12 46.7 0.0 4.5 4 1 0 4 4 4 4 PAS domain PAS_8 PF13188.7 gi|154151555|ref|YP_001405173.1| - 1.1e-19 70.0 0.0 4.9e-06 26.4 0.0 4.4 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.12 gi|154151555|ref|YP_001405173.1| - 1.8e-11 44.1 0.0 0.00034 20.9 0.0 3.5 4 0 0 4 4 4 2 PAS fold HTH_IclR PF09339.10 gi|154151555|ref|YP_001405173.1| - 0.0032 17.2 0.0 0.0074 16.1 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MLTR_LBD PF17765.1 gi|154151555|ref|YP_001405173.1| - 0.024 14.7 0.0 0.6 10.2 0.0 2.7 3 0 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain TrmB PF01978.19 gi|154151555|ref|YP_001405173.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TBPIP PF07106.13 gi|154151555|ref|YP_001405173.1| - 0.16 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain FMN_red PF03358.15 gi|154151556|ref|YP_001405174.1| - 1e-21 77.3 0.0 1.3e-21 77.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154151556|ref|YP_001405174.1| - 6e-07 29.4 0.0 7.8e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold MFS_1 PF07690.16 gi|154151557|ref|YP_001405175.1| - 1.6e-54 185.2 46.5 3.7e-54 184.0 46.5 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_4 PF06779.14 gi|154151557|ref|YP_001405175.1| - 5.9e-06 25.8 12.1 5.9e-06 25.8 12.1 2.7 2 1 1 3 3 3 1 Uncharacterised MFS-type transporter YbfB Sugar_tr PF00083.24 gi|154151557|ref|YP_001405175.1| - 1.5e-05 24.1 19.0 1.5e-05 24.1 19.0 2.6 2 2 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|154151557|ref|YP_001405175.1| - 0.0012 17.3 12.2 0.0022 16.5 12.2 1.5 1 0 0 1 1 1 1 Transmembrane secretion effector OATP PF03137.20 gi|154151557|ref|YP_001405175.1| - 4.4 5.5 24.7 0.21 9.8 3.6 3.2 2 2 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family MFS_2 PF13347.6 gi|154151557|ref|YP_001405175.1| - 6.4 5.2 47.3 1.7 7.1 16.1 3.4 1 1 2 3 3 3 0 MFS/sugar transport protein Aldo_ket_red PF00248.21 gi|154151558|ref|YP_001405176.1| - 3.2e-38 131.6 0.0 1.1e-36 126.5 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|154151558|ref|YP_001405176.1| - 2.9e-08 34.1 8.6 6.6e-08 33.0 8.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154151558|ref|YP_001405176.1| - 4.4e-07 30.0 9.3 8.9e-07 29.0 9.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|154151558|ref|YP_001405176.1| - 0.00052 20.4 7.8 0.0012 19.3 7.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|154151558|ref|YP_001405176.1| - 0.029 14.2 14.7 0.032 14.1 7.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Sacchrp_dh_NADP PF03435.18 gi|154151558|ref|YP_001405176.1| - 0.034 14.4 0.0 0.08 13.2 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Vps5 PF09325.10 gi|154151558|ref|YP_001405176.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Vps5 C terminal like AMNp_N PF10423.9 gi|154151558|ref|YP_001405176.1| - 0.14 11.8 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial AMP nucleoside phosphorylase N-terminus Fer4_10 PF13237.6 gi|154151558|ref|YP_001405176.1| - 0.35 11.0 12.9 0.16 12.1 4.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|154151558|ref|YP_001405176.1| - 1.3 9.3 6.6 0.55 10.5 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain 2-Hacid_dh_C PF02826.19 gi|154151559|ref|YP_001405177.1| - 8.7e-47 158.8 0.0 1.2e-46 158.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|154151559|ref|YP_001405177.1| - 4.4e-17 62.0 0.0 5.4e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ThiF PF00899.21 gi|154151559|ref|YP_001405177.1| - 0.0012 18.3 1.4 0.003 16.9 1.1 1.7 1 1 1 2 2 2 1 ThiF family Shikimate_DH PF01488.20 gi|154151559|ref|YP_001405177.1| - 0.0013 18.8 0.0 0.16 12.0 0.0 2.3 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|154151559|ref|YP_001405177.1| - 0.007 16.5 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|154151559|ref|YP_001405177.1| - 0.023 15.2 0.1 0.056 13.9 0.1 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding IlvN PF07991.12 gi|154151559|ref|YP_001405177.1| - 0.035 13.7 0.0 0.073 12.6 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|154151559|ref|YP_001405177.1| - 0.093 12.4 0.1 0.2 11.3 0.1 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.6 gi|154151559|ref|YP_001405177.1| - 0.094 13.2 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain adh_short PF00106.25 gi|154151559|ref|YP_001405177.1| - 0.14 11.6 0.1 0.22 10.9 0.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase TPR_14 PF13428.6 gi|154151560|ref|YP_001405178.1| - 5e-15 54.9 8.5 1e-05 25.9 0.0 4.9 2 2 3 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154151560|ref|YP_001405178.1| - 5.3e-13 49.4 9.4 1e-06 29.2 0.1 3.4 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154151560|ref|YP_001405178.1| - 1.5e-12 46.6 0.4 0.044 13.9 0.0 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154151560|ref|YP_001405178.1| - 8.1e-11 42.3 11.5 7.4e-08 32.8 2.0 3.0 2 1 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154151560|ref|YP_001405178.1| - 8.2e-10 38.2 6.7 0.0033 17.1 0.5 4.4 3 1 1 4 4 4 2 TPR repeat TPR_1 PF00515.28 gi|154151560|ref|YP_001405178.1| - 1.9e-08 33.8 0.4 0.0043 16.8 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154151560|ref|YP_001405178.1| - 7.7e-08 32.0 1.0 0.91 9.9 0.1 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|154151560|ref|YP_001405178.1| - 1.9e-07 31.0 2.1 0.0043 17.3 0.1 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154151560|ref|YP_001405178.1| - 4.8e-06 26.8 5.1 2.1 8.7 0.0 4.1 2 1 0 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|154151560|ref|YP_001405178.1| - 1.1e-05 25.7 3.4 0.022 15.4 0.1 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|154151560|ref|YP_001405178.1| - 5e-05 22.7 3.5 0.00037 19.8 0.8 2.6 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154151560|ref|YP_001405178.1| - 0.0001 22.1 0.8 2.2 8.5 0.0 4.1 3 1 1 4 4 4 2 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|154151560|ref|YP_001405178.1| - 0.012 15.5 0.1 0.012 15.5 0.1 2.0 2 0 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal TPR_9 PF13371.6 gi|154151560|ref|YP_001405178.1| - 0.016 15.4 6.0 0.067 13.3 0.5 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat BTAD PF03704.17 gi|154151560|ref|YP_001405178.1| - 0.038 14.4 2.7 0.04 14.4 0.3 2.0 2 1 0 2 2 2 0 Bacterial transcriptional activator domain MIT PF04212.18 gi|154151560|ref|YP_001405178.1| - 0.057 13.5 2.4 22 5.2 0.0 3.4 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain ANAPC3 PF12895.7 gi|154151560|ref|YP_001405178.1| - 0.1 12.8 0.4 1.7 8.9 0.0 2.6 2 1 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|154151560|ref|YP_001405178.1| - 0.29 11.1 5.4 4.3 7.3 0.4 3.7 4 1 0 4 4 4 0 Tetratricopeptide repeat TPR_4 PF07721.14 gi|154151560|ref|YP_001405178.1| - 1.7 9.5 6.6 1.8 9.4 0.0 3.8 4 0 0 4 4 3 0 Tetratricopeptide repeat NiFeSe_Hases PF00374.19 gi|154151562|ref|YP_001405180.1| - 7.7e-29 100.9 6.0 2.7e-13 49.7 0.1 4.8 2 1 1 3 3 3 3 Nickel-dependent hydrogenase DUF1508 PF07411.12 gi|154151563|ref|YP_001405181.1| - 0.00077 19.3 0.6 0.0021 17.8 0.6 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) GalP_UDP_transf PF01087.22 gi|154151563|ref|YP_001405181.1| - 0.15 12.5 0.0 0.29 11.5 0.0 1.5 1 1 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, N-terminal domain TPR_12 PF13424.6 gi|154151567|ref|YP_001405185.1| - 3.3e-39 133.0 12.6 1.4e-05 25.3 0.1 10.7 5 4 3 8 8 8 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154151567|ref|YP_001405185.1| - 9.2e-32 106.6 14.5 8.1e-05 22.4 0.5 12.7 13 0 0 13 13 13 7 Tetratricopeptide repeat TPR_1 PF00515.28 gi|154151567|ref|YP_001405185.1| - 1.6e-28 97.3 26.3 1.9e-05 24.3 2.7 12.4 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_10 PF13374.6 gi|154151567|ref|YP_001405185.1| - 5.7e-25 86.4 19.4 0.00017 21.4 0.2 10.6 11 0 0 11 11 11 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154151567|ref|YP_001405185.1| - 5.3e-20 69.9 27.7 0.004 17.3 0.5 12.5 12 0 0 12 12 12 5 Tetratricopeptide repeat DUF4062 PF13271.6 gi|154151567|ref|YP_001405185.1| - 4.9e-19 68.5 0.0 2.2e-18 66.4 0.0 2.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4062) TPR_7 PF13176.6 gi|154151567|ref|YP_001405185.1| - 8.8e-13 47.3 15.7 0.064 13.3 0.1 10.2 10 0 0 10 10 10 5 Tetratricopeptide repeat AAA_16 PF13191.6 gi|154151567|ref|YP_001405185.1| - 1.2e-08 35.6 0.0 4.2e-08 33.7 0.0 2.0 1 0 0 1 1 1 1 AAA ATPase domain TPR_16 PF13432.6 gi|154151567|ref|YP_001405185.1| - 1.7e-06 28.6 0.5 13 6.6 0.0 7.1 8 0 0 8 8 7 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154151567|ref|YP_001405185.1| - 3.7e-06 27.3 0.0 10 7.2 0.0 7.2 8 0 0 8 8 6 0 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|154151567|ref|YP_001405185.1| - 1.2e-05 24.9 0.0 0.016 14.6 0.0 4.2 4 0 0 4 4 4 1 MalT-like TPR region TPR_17 PF13431.6 gi|154151567|ref|YP_001405185.1| - 3.3e-05 23.9 24.0 0.52 10.8 0.2 10.0 10 1 1 11 11 10 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|154151567|ref|YP_001405185.1| - 0.0051 17.4 5.1 20 6.1 0.0 5.9 6 0 0 6 6 4 0 Tetratricopeptide repeat MIT PF04212.18 gi|154151567|ref|YP_001405185.1| - 0.017 15.2 12.8 19 5.4 0.2 5.6 5 0 0 5 5 5 0 MIT (microtubule interacting and transport) domain TPR_19 PF14559.6 gi|154151567|ref|YP_001405185.1| - 0.028 14.9 13.6 3.5 8.2 0.2 7.2 5 3 3 8 8 8 0 Tetratricopeptide repeat TIR_2 PF13676.6 gi|154151567|ref|YP_001405185.1| - 0.075 13.6 0.0 0.33 11.5 0.0 2.1 2 0 0 2 2 1 0 TIR domain GA PF01468.17 gi|154151567|ref|YP_001405185.1| - 0.22 11.8 2.2 1.4 9.2 1.2 2.9 3 0 0 3 3 3 0 GA module NB-ARC PF00931.22 gi|154151567|ref|YP_001405185.1| - 0.25 10.5 1.2 0.88 8.7 1.2 2.0 1 1 0 1 1 1 0 NB-ARC domain IL17R_fnIII_D2 PF16578.5 gi|154151567|ref|YP_001405185.1| - 0.33 11.5 1.6 0.81 10.2 0.7 2.1 2 0 0 2 2 1 0 Interleukin 17 receptor D Exonuc_VII_S PF02609.16 gi|154151567|ref|YP_001405185.1| - 0.43 10.7 2.2 28 4.9 0.1 3.8 3 0 0 3 3 3 0 Exonuclease VII small subunit ANAPC5 PF12862.7 gi|154151567|ref|YP_001405185.1| - 0.9 9.7 7.1 17 5.6 0.0 5.3 5 1 2 7 7 6 0 Anaphase-promoting complex subunit 5 RPN7 PF10602.9 gi|154151567|ref|YP_001405185.1| - 5.6 6.6 11.4 0.7 9.6 0.7 4.3 5 0 0 5 5 4 0 26S proteasome subunit RPN7 DUF3043 PF11241.8 gi|154151568|ref|YP_001405186.1| - 0.47 10.5 2.5 4.5 7.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3043) PEGA PF08308.11 gi|154151569|ref|YP_001405187.1| - 1.4e-06 28.1 0.0 0.0088 15.9 0.0 2.5 2 0 0 2 2 2 2 PEGA domain CarboxypepD_reg PF13620.6 gi|154151569|ref|YP_001405187.1| - 0.00032 20.9 0.6 0.00098 19.4 0.1 2.1 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Mfa2 PF08842.10 gi|154151569|ref|YP_001405187.1| - 0.093 12.3 0.9 0.81 9.2 0.6 1.8 1 1 1 2 2 2 0 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 Asp_Glu_race PF01177.22 gi|154151570|ref|YP_001405188.1| - 7.7e-50 169.8 0.0 8.7e-50 169.6 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Response_reg PF00072.24 gi|154151571|ref|YP_001405189.1| - 9.4e-23 80.5 0.7 2.6e-22 79.1 0.7 1.8 1 0 0 1 1 1 1 Response regulator receiver domain TPR_1 PF00515.28 gi|154151571|ref|YP_001405189.1| - 2.2e-17 62.0 3.8 0.0011 18.7 0.1 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154151571|ref|YP_001405189.1| - 4.2e-17 62.4 5.0 1.5e-05 25.4 0.2 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154151571|ref|YP_001405189.1| - 7e-15 53.9 4.8 0.00015 21.6 0.2 5.9 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154151571|ref|YP_001405189.1| - 3e-14 53.4 0.0 9.2e-08 32.6 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154151571|ref|YP_001405189.1| - 1.2e-13 50.0 4.5 0.39 11.0 0.1 6.1 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154151571|ref|YP_001405189.1| - 9.3e-13 47.8 1.5 0.0025 18.5 0.0 5.0 2 2 3 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154151571|ref|YP_001405189.1| - 7.4e-12 45.3 0.0 0.0042 17.2 0.0 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|154151571|ref|YP_001405189.1| - 2.3e-10 40.1 1.8 0.0062 16.8 0.0 6.1 7 0 0 7 7 6 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154151571|ref|YP_001405189.1| - 1.2e-09 38.4 5.1 0.02 15.2 0.3 5.0 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154151571|ref|YP_001405189.1| - 1.2e-08 34.5 1.2 0.03 14.0 0.3 5.0 4 2 2 6 6 6 3 TPR repeat NARP1 PF12569.8 gi|154151571|ref|YP_001405189.1| - 3.7e-08 32.7 3.0 0.039 12.9 0.1 3.0 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 TPR_6 PF13174.6 gi|154151571|ref|YP_001405189.1| - 8e-07 29.3 2.3 0.24 12.1 0.1 4.8 5 0 0 5 5 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|154151571|ref|YP_001405189.1| - 1.2e-05 25.4 2.5 0.00015 21.9 0.4 2.7 3 0 0 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.6 gi|154151571|ref|YP_001405189.1| - 1.3e-05 24.5 1.8 0.42 9.8 0.4 3.7 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154151571|ref|YP_001405189.1| - 5e-05 23.0 0.0 1.4 9.1 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_3 PF07720.12 gi|154151571|ref|YP_001405189.1| - 0.00023 21.1 1.5 0.00058 19.8 1.5 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|154151571|ref|YP_001405189.1| - 0.00043 20.6 1.6 6.7 7.1 0.0 3.6 3 1 1 4 4 4 0 Tetratricopeptide repeat ChAPs PF09295.10 gi|154151571|ref|YP_001405189.1| - 0.0018 17.4 0.1 1 8.3 0.0 2.1 1 1 1 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) NRDE-2 PF08424.10 gi|154151571|ref|YP_001405189.1| - 0.0019 17.4 1.0 0.0062 15.7 0.6 1.9 2 0 0 2 2 2 1 NRDE-2, necessary for RNA interference Fis1_TPR_C PF14853.6 gi|154151571|ref|YP_001405189.1| - 0.002 18.1 2.0 1.7 8.8 0.0 3.7 4 0 0 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|154151571|ref|YP_001405189.1| - 0.0032 17.3 2.3 23 5.0 0.1 5.0 5 0 0 5 5 5 0 Tetratricopeptide repeat DUF3856 PF12968.7 gi|154151571|ref|YP_001405189.1| - 0.015 15.4 1.0 4.5 7.3 0.1 3.7 2 2 1 3 3 3 0 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|154151571|ref|YP_001405189.1| - 0.038 14.4 0.2 2.4 8.6 0.0 3.0 1 1 1 3 3 3 0 Bacterial transcriptional activator domain TPR_21 PF09976.9 gi|154151571|ref|YP_001405189.1| - 0.042 13.5 1.9 1.1 9.0 0.1 2.6 1 1 2 3 3 3 0 Tetratricopeptide repeat-like domain PPTA PF01239.22 gi|154151571|ref|YP_001405189.1| - 0.098 12.4 1.3 39 4.2 0.1 3.6 4 0 0 4 4 3 0 Protein prenyltransferase alpha subunit repeat TOM20_plant PF06552.12 gi|154151571|ref|YP_001405189.1| - 0.17 11.7 0.6 40 3.9 0.0 3.3 4 1 0 4 4 4 0 Plant specific mitochondrial import receptor subunit TOM20 tRNA-Thr_ED PF08915.11 gi|154151572|ref|YP_001405190.1| - 2.1e-43 147.6 0.2 2.4e-43 147.5 0.2 1.0 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HR1 PF02185.16 gi|154151572|ref|YP_001405190.1| - 0.0088 16.1 0.5 0.013 15.6 0.1 1.4 2 0 0 2 2 2 1 Hr1 repeat PAP2 PF01569.21 gi|154151573|ref|YP_001405191.1| - 2.1e-15 56.7 8.8 2.1e-15 56.7 8.8 1.8 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|154151573|ref|YP_001405191.1| - 0.0002 21.1 16.1 0.0017 18.1 15.9 2.3 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|154151573|ref|YP_001405191.1| - 0.1 13.1 3.4 0.29 11.7 3.4 1.8 1 0 0 1 1 1 0 PAP2 superfamily C-terminal Arginase PF00491.21 gi|154151574|ref|YP_001405192.1| - 4.9e-83 278.9 0.1 6.1e-83 278.6 0.1 1.0 1 0 0 1 1 1 1 Arginase family UPF0489 PF12640.7 gi|154151574|ref|YP_001405192.1| - 0.083 13.1 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 UPF0489 domain DUF3147 PF11345.8 gi|154151575|ref|YP_001405193.1| - 7.3e-09 36.0 6.4 9e-09 35.7 6.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3147) GlpM PF06942.12 gi|154151575|ref|YP_001405193.1| - 5.6e-08 33.2 3.0 6.7e-08 32.9 3.0 1.0 1 0 0 1 1 1 1 GlpM protein DSBA PF01323.20 gi|154151576|ref|YP_001405194.1| - 5.8e-06 26.2 0.1 3e-05 23.9 0.1 1.9 2 0 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|154151576|ref|YP_001405194.1| - 0.00013 22.1 0.0 0.00026 21.2 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin GILT PF03227.16 gi|154151576|ref|YP_001405194.1| - 0.0014 18.9 0.0 0.0022 18.2 0.0 1.4 1 0 0 1 1 1 1 Gamma interferon inducible lysosomal thiol reductase (GILT) FUSC_2 PF13515.6 gi|154151577|ref|YP_001405195.1| - 6.8e-14 52.1 12.9 6.8e-14 52.1 12.9 1.9 1 1 1 2 2 2 1 Fusaric acid resistance protein-like ArAE_1 PF06081.11 gi|154151577|ref|YP_001405195.1| - 7.6e-10 39.1 14.5 1.1e-09 38.6 13.5 1.7 1 1 1 2 2 2 1 Aromatic acid exporter family member 1 FUSC PF04632.12 gi|154151577|ref|YP_001405195.1| - 2.4e-05 23.1 19.2 2.9e-05 22.8 18.9 1.4 1 1 0 1 1 1 1 Fusaric acid resistance protein family YfhO PF09586.10 gi|154151577|ref|YP_001405195.1| - 0.65 8.2 6.6 0.92 7.7 6.6 1.2 1 0 0 1 1 1 0 Bacterial membrane protein YfhO TctB PF07331.11 gi|154151577|ref|YP_001405195.1| - 4.9 7.4 23.4 46 4.3 23.4 2.1 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family CARDB PF07705.11 gi|154151578|ref|YP_001405196.1| - 0.028 14.7 9.9 1.2 9.5 0.3 4.4 2 1 1 3 3 3 0 CARDB MacB_PCD PF12704.7 gi|154151579|ref|YP_001405197.1| - 1.4e-18 68.0 6.5 1.4e-18 68.0 6.5 2.2 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|154151579|ref|YP_001405197.1| - 3.4e-11 43.4 2.4 3.4e-11 43.4 2.4 3.3 3 0 0 3 3 3 1 FtsX-like permease family DUF4134 PF13572.6 gi|154151579|ref|YP_001405197.1| - 0.02 15.2 0.3 0.02 15.2 0.3 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4134) SET PF00856.28 gi|154151580|ref|YP_001405198.1| - 9.8e-16 58.6 0.1 4.2e-13 50.0 0.1 2.2 1 1 0 1 1 1 1 SET domain SAF PF08666.12 gi|154151580|ref|YP_001405198.1| - 0.031 14.9 0.0 0.69 10.6 0.0 2.2 2 0 0 2 2 2 0 SAF domain ThiI PF02568.14 gi|154151581|ref|YP_001405199.1| - 3.2e-62 209.6 0.1 4.1e-62 209.3 0.1 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|154151581|ref|YP_001405199.1| - 8.4e-15 55.1 0.3 1.7e-14 54.1 0.0 1.6 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|154151581|ref|YP_001405199.1| - 4.1e-07 29.7 0.0 1.7e-06 27.7 0.0 1.8 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|154151581|ref|YP_001405199.1| - 0.0061 15.4 0.0 0.009 14.8 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Abhydrolase_1 PF00561.20 gi|154151582|ref|YP_001405200.1| - 1.6e-38 132.8 0.1 2e-38 132.5 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold CBS PF00571.28 gi|154151582|ref|YP_001405200.1| - 8.7e-25 86.9 2.5 3.1e-11 43.6 0.4 2.7 3 0 0 3 3 3 2 CBS domain Hydrolase_4 PF12146.8 gi|154151582|ref|YP_001405200.1| - 0.002 17.4 0.0 0.02 14.2 0.0 2.0 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|154151582|ref|YP_001405200.1| - 0.0022 18.6 0.0 0.0034 18.0 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.20 gi|154151582|ref|YP_001405200.1| - 0.066 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Putative esterase CAAD PF14159.6 gi|154151582|ref|YP_001405200.1| - 0.13 12.1 0.0 0.41 10.5 0.0 1.8 1 0 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Cys_Met_Meta_PP PF01053.20 gi|154151583|ref|YP_001405201.1| - 1.1e-144 481.7 0.0 1.2e-144 481.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|154151583|ref|YP_001405201.1| - 6.1e-13 48.8 0.1 9.3e-13 48.2 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|154151583|ref|YP_001405201.1| - 2.9e-06 26.5 0.1 4.8e-06 25.8 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|154151583|ref|YP_001405201.1| - 3.2e-05 23.3 0.0 4.6e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Met_gamma_lyase PF06838.11 gi|154151583|ref|YP_001405201.1| - 0.0028 16.3 0.5 0.47 8.9 0.2 2.2 2 0 0 2 2 2 2 Methionine gamma-lyase Beta_elim_lyase PF01212.21 gi|154151583|ref|YP_001405201.1| - 0.0068 15.7 0.0 0.028 13.7 0.0 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase Asparaginase_C PF17763.1 gi|154151583|ref|YP_001405201.1| - 0.14 12.4 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain SepSecS PF05889.13 gi|154151584|ref|YP_001405202.1| - 2.9e-18 65.7 0.0 7.3e-18 64.4 0.0 1.5 1 1 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|154151584|ref|YP_001405202.1| - 1.3e-14 53.9 0.1 2.3e-14 53.2 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|154151584|ref|YP_001405202.1| - 0.00027 20.3 0.0 0.00044 19.6 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|154151584|ref|YP_001405202.1| - 0.001 18.3 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Radical_SAM PF04055.21 gi|154151585|ref|YP_001405203.1| - 6.6e-12 46.1 0.1 9.7e-12 45.6 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily HTH_24 PF13412.6 gi|154151587|ref|YP_001405205.1| - 3.5e-06 26.5 0.0 4.4e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|154151587|ref|YP_001405205.1| - 0.0012 18.7 0.1 0.0016 18.2 0.1 1.3 1 1 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.21 gi|154151587|ref|YP_001405205.1| - 0.0041 16.8 0.0 0.0051 16.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|154151587|ref|YP_001405205.1| - 0.0055 16.6 0.0 0.0064 16.4 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|154151587|ref|YP_001405205.1| - 0.053 13.5 0.0 0.06 13.3 0.0 1.1 1 0 0 1 1 1 0 HTH domain HTH_9 PF08221.11 gi|154151587|ref|YP_001405205.1| - 0.076 13.1 0.1 0.11 12.7 0.1 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|154151587|ref|YP_001405205.1| - 0.083 12.8 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|154151587|ref|YP_001405205.1| - 0.098 12.5 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2582 PF10771.9 gi|154151587|ref|YP_001405205.1| - 0.18 12.0 0.0 0.22 11.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) Mem_trans PF03547.18 gi|154151588|ref|YP_001405206.1| - 4.8e-33 114.1 30.6 3.9e-17 61.7 11.4 2.0 1 1 1 2 2 2 2 Membrane transport protein SLATT_3 PF18184.1 gi|154151588|ref|YP_001405206.1| - 2 8.5 5.9 3.5 7.7 1.3 2.5 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 CMD PF02627.20 gi|154151589|ref|YP_001405207.1| - 4.7e-16 58.6 1.0 6.3e-16 58.2 1.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family HK PF02110.15 gi|154151589|ref|YP_001405207.1| - 0.021 14.2 1.6 0.023 14.1 1.6 1.0 1 0 0 1 1 1 0 Hydroxyethylthiazole kinase family FmdE PF02663.14 gi|154151590|ref|YP_001405208.1| - 3.8e-41 140.2 0.0 5.3e-41 139.7 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|154151590|ref|YP_001405208.1| - 2.9e-10 39.9 1.5 5.7e-10 39.0 1.5 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger OrfB_Zn_ribbon PF07282.11 gi|154151590|ref|YP_001405208.1| - 0.031 14.2 1.2 0.073 13.0 1.2 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain ArfGap PF01412.18 gi|154151590|ref|YP_001405208.1| - 0.093 12.8 0.3 0.15 12.2 0.3 1.3 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf POTRA_TamA_1 PF17243.2 gi|154151591|ref|YP_001405209.1| - 0.095 12.8 0.1 0.71 10.0 0.1 2.1 1 1 1 2 2 2 0 POTRA domain TamA domain 1 Peptidase_M3 PF01432.20 gi|154151592|ref|YP_001405210.1| - 4.7e-114 382.2 0.0 5.8e-114 381.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M3 Peptidase_M2 PF01401.18 gi|154151592|ref|YP_001405210.1| - 0.27 9.8 0.0 0.36 9.4 0.0 1.1 1 0 0 1 1 1 0 Angiotensin-converting enzyme Aminotran_5 PF00266.19 gi|154151593|ref|YP_001405211.1| - 6e-123 410.5 0.0 1.5e-122 409.1 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V PAPS_reduct PF01507.19 gi|154151593|ref|YP_001405211.1| - 2.1e-31 109.3 0.0 3.9e-31 108.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family DegT_DnrJ_EryC1 PF01041.17 gi|154151593|ref|YP_001405211.1| - 5.6e-10 39.1 0.0 9.5e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|154151593|ref|YP_001405211.1| - 1.1e-06 28.1 0.0 1.7e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|154151593|ref|YP_001405211.1| - 1.5e-06 27.0 0.0 2.3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|154151593|ref|YP_001405211.1| - 7.6e-06 25.4 0.0 1.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 gi|154151593|ref|YP_001405211.1| - 0.076 11.7 0.0 0.12 11.0 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS HK PF02110.15 gi|154151594|ref|YP_001405212.1| - 1.7e-81 273.2 3.0 2e-81 273.0 3.0 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|154151594|ref|YP_001405212.1| - 8.4e-05 22.1 1.0 0.0001 21.9 0.7 1.2 1 1 0 1 1 1 1 Carbohydrate kinase TMP-TENI PF02581.17 gi|154151595|ref|YP_001405213.1| - 1.7e-56 190.4 1.2 2.1e-56 190.1 1.2 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|154151595|ref|YP_001405213.1| - 0.013 14.9 9.5 0.028 13.8 8.9 1.8 1 1 0 1 1 1 0 Nitronate monooxygenase His_biosynth PF00977.21 gi|154151595|ref|YP_001405213.1| - 0.014 14.9 1.0 0.031 13.7 0.7 1.6 1 1 0 1 1 1 0 Histidine biosynthesis protein ThiG PF05690.14 gi|154151595|ref|YP_001405213.1| - 0.22 10.8 8.3 0.04 13.2 3.1 1.9 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG LigD_N PF13298.6 gi|154151596|ref|YP_001405214.1| - 6.5e-34 116.4 0.1 8.3e-34 116.0 0.1 1.1 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) DUF3467 PF11950.8 gi|154151598|ref|YP_001405216.1| - 5.7e-18 64.9 0.0 6.8e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) PDDEXK_1 PF12705.7 gi|154151599|ref|YP_001405217.1| - 6.2e-06 26.3 0.6 0.0038 17.2 0.1 2.7 3 0 0 3 3 3 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|154151599|ref|YP_001405217.1| - 4.3e-05 23.7 0.0 8.5e-05 22.7 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function DUF83 Csa1 PF06023.12 gi|154151599|ref|YP_001405217.1| - 0.028 13.8 0.0 0.032 13.6 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated exonuclease Csa1 HATPase_c PF02518.26 gi|154151600|ref|YP_001405218.1| - 4.8e-10 39.9 0.0 8.5e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|154151600|ref|YP_001405218.1| - 0.00012 22.0 0.0 0.00035 20.5 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|154151600|ref|YP_001405218.1| - 0.00098 19.1 0.0 0.0022 18.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold 5TM-5TMR_LYT PF07694.12 gi|154151600|ref|YP_001405218.1| - 0.0015 18.0 11.2 0.23 10.9 13.0 2.7 1 1 1 2 2 2 2 5TMR of 5TMR-LYT PAS_7 PF12860.7 gi|154151600|ref|YP_001405218.1| - 0.0048 17.0 0.0 0.02 15.1 0.0 2.1 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|154151600|ref|YP_001405218.1| - 0.026 14.8 0.1 0.07 13.4 0.1 1.8 1 0 0 1 1 1 0 PAS fold Phi-29_GP16_7 PF06720.11 gi|154151600|ref|YP_001405218.1| - 0.12 12.2 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage phi-29 early protein GP16.7 7tm_3 PF00003.22 gi|154151600|ref|YP_001405218.1| - 0.13 12.0 6.1 1.2 8.8 0.1 2.2 2 0 0 2 2 2 0 7 transmembrane sweet-taste receptor of 3 GCPR DUF2207 PF09972.9 gi|154151600|ref|YP_001405218.1| - 2.3 6.9 5.3 21 3.7 5.3 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) MARVEL PF01284.23 gi|154151600|ref|YP_001405218.1| - 3.8 7.5 9.3 1.4 8.9 1.5 2.9 2 1 0 3 3 3 0 Membrane-associating domain SKG6 PF08693.10 gi|154151600|ref|YP_001405218.1| - 9.9 5.7 9.1 22 4.6 0.2 3.7 3 0 0 3 3 3 0 Transmembrane alpha-helix domain Radical_SAM PF04055.21 gi|154151601|ref|YP_001405219.1| - 1.6e-05 25.3 0.2 5.9e-05 23.5 0.1 2.1 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|154151601|ref|YP_001405219.1| - 3.2e-05 24.0 0.0 6.5e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|154151601|ref|YP_001405219.1| - 0.00093 19.5 0.0 0.0017 18.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Prenyltransf PF01255.19 gi|154151602|ref|YP_001405220.1| - 3.7e-68 229.4 0.0 4.5e-68 229.1 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Pox_D5 PF03288.16 gi|154151603|ref|YP_001405221.1| - 0.0041 17.6 0.0 0.0057 17.1 0.0 1.2 1 0 0 1 1 1 1 Poxvirus D5 protein-like TALPID3 PF15324.6 gi|154151603|ref|YP_001405221.1| - 4.3 4.9 10.1 5.4 4.6 10.1 1.0 1 0 0 1 1 1 0 Hedgehog signalling target Prenyltransf PF01255.19 gi|154151604|ref|YP_001405222.1| - 2.3e-21 76.4 0.0 2.8e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase ATPase PF06745.13 gi|154151605|ref|YP_001405223.1| - 0.0017 17.7 0.4 0.24 10.7 0.1 2.6 2 1 0 2 2 2 2 KaiC PAXNEB PF05625.11 gi|154151605|ref|YP_001405223.1| - 0.0087 15.2 0.1 0.049 12.8 0.0 1.9 2 0 0 2 2 2 1 PAXNEB protein Arf PF00025.21 gi|154151606|ref|YP_001405224.1| - 3.9e-09 36.2 0.0 2e-08 33.9 0.0 1.9 2 0 0 2 2 2 1 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|154151606|ref|YP_001405224.1| - 1.6e-08 34.3 0.1 2.8e-07 30.3 0.0 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|154151606|ref|YP_001405224.1| - 1.8e-08 34.2 0.0 3.6e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Ras family ATP_bind_1 PF03029.17 gi|154151606|ref|YP_001405224.1| - 8.6e-08 32.3 0.0 3.6e-06 26.9 0.0 2.4 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|154151606|ref|YP_001405224.1| - 8.7e-05 22.7 0.0 0.0003 21.0 0.0 1.8 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1 PF01926.23 gi|154151606|ref|YP_001405224.1| - 0.00066 19.7 0.0 0.0088 16.1 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|154151606|ref|YP_001405224.1| - 0.0064 16.0 0.1 0.038 13.5 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B ATPase PF06745.13 gi|154151606|ref|YP_001405224.1| - 0.015 14.6 0.0 0.11 11.8 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_25 PF13481.6 gi|154151606|ref|YP_001405224.1| - 0.035 13.7 0.4 1.9 8.0 0.1 2.6 3 0 0 3 3 3 0 AAA domain SRPRB PF09439.10 gi|154151606|ref|YP_001405224.1| - 0.037 13.4 0.0 0.063 12.7 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|154151606|ref|YP_001405224.1| - 0.14 12.1 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|154151606|ref|YP_001405224.1| - 0.19 11.4 0.0 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain TP_methylase PF00590.20 gi|154151607|ref|YP_001405225.1| - 1.4e-18 67.7 0.0 1.6e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF357 PF04010.13 gi|154151608|ref|YP_001405226.1| - 1.5e-42 143.5 0.7 2.7e-20 72.2 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF357) Fic PF02661.18 gi|154151608|ref|YP_001405226.1| - 0.15 13.0 0.1 5.5 8.0 0.0 2.4 2 1 0 2 2 2 0 Fic/DOC family LPG_synthase_TM PF03706.13 gi|154151609|ref|YP_001405227.1| - 6.3e-48 163.8 36.0 7.3e-48 163.6 36.0 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region HCV_NS4a PF01006.20 gi|154151609|ref|YP_001405227.1| - 6.7 6.5 7.5 12 5.7 0.5 3.1 2 1 1 3 3 3 0 Hepatitis C virus non-structural protein NS4a DNase-RNase PF02577.14 gi|154151610|ref|YP_001405228.1| - 4e-35 120.3 0.0 4.4e-35 120.1 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease PRA-PH PF01503.17 gi|154151611|ref|YP_001405229.1| - 1.6e-13 50.9 0.1 1.7e-13 50.8 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|154151611|ref|YP_001405229.1| - 0.00033 20.8 0.2 0.00048 20.3 0.2 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain Integrin_beta PF00362.18 gi|154151611|ref|YP_001405229.1| - 0.19 11.4 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 Integrin beta chain VWA domain KH_2 PF07650.17 gi|154151612|ref|YP_001405230.1| - 7.7e-20 70.5 3.6 2.6e-14 52.8 0.2 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|154151612|ref|YP_001405230.1| - 1.4e-13 50.7 1.9 4e-13 49.2 0.3 2.0 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|154151612|ref|YP_001405230.1| - 5.3e-08 32.6 0.9 0.0024 17.7 0.2 2.1 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|154151612|ref|YP_001405230.1| - 9.1e-06 25.4 2.5 0.00022 21.0 0.4 2.2 2 0 0 2 2 2 2 KH domain SIMPL PF04402.14 gi|154151613|ref|YP_001405231.1| - 2e-43 149.2 15.5 2.3e-43 149.0 15.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) CcdB PF01845.17 gi|154151613|ref|YP_001405231.1| - 0.015 15.5 1.0 0.042 14.1 0.3 2.1 2 0 0 2 2 2 0 CcdB protein SMC_N PF02463.19 gi|154151613|ref|YP_001405231.1| - 0.016 14.6 0.1 0.035 13.5 0.1 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Aconitase PF00330.20 gi|154151614|ref|YP_001405232.1| - 9.6e-98 328.1 2.9 9.2e-96 321.6 2.9 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF2278 PF10042.9 gi|154151614|ref|YP_001405232.1| - 0.034 14.2 0.1 0.052 13.6 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2278) DUF521 PF04412.13 gi|154151614|ref|YP_001405232.1| - 0.046 12.4 0.0 0.078 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Aconitase_C PF00694.19 gi|154151615|ref|YP_001405233.1| - 7.1e-23 81.4 0.1 3.7e-21 75.8 0.1 2.1 1 1 1 2 2 2 2 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|154151615|ref|YP_001405233.1| - 1.3e-05 24.9 0.4 0.00026 20.7 0.4 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.20 gi|154151616|ref|YP_001405234.1| - 9.5e-97 324.2 0.0 1.1e-96 324.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF429 PF04250.13 gi|154151617|ref|YP_001405235.1| - 5.5e-09 36.1 0.0 2.1e-08 34.2 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF429) PAS_4 PF08448.10 gi|154151618|ref|YP_001405236.1| - 1.2e-13 51.3 0.0 3.2e-08 33.8 0.0 2.1 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|154151618|ref|YP_001405236.1| - 4.2e-13 49.4 0.0 7.2e-06 26.2 0.0 2.2 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|154151618|ref|YP_001405236.1| - 1e-06 28.7 0.0 0.0018 18.3 0.0 2.4 2 1 0 2 2 2 2 PAS fold Oxidored_nitro PF00148.19 gi|154151620|ref|YP_001405238.1| - 1.4e-36 126.1 0.0 1.3e-35 122.9 0.0 1.9 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|154151621|ref|YP_001405239.1| - 6.8e-54 183.1 0.0 9e-54 182.7 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.18 gi|154151622|ref|YP_001405240.1| - 3e-109 364.6 0.0 3.4e-109 364.5 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|154151622|ref|YP_001405240.1| - 4.7e-14 52.5 0.0 6.8e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|154151622|ref|YP_001405240.1| - 2e-08 34.4 0.0 3.3e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|154151622|ref|YP_001405240.1| - 1.2e-07 31.5 0.1 8.1e-05 22.2 0.1 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|154151622|ref|YP_001405240.1| - 2e-06 27.2 0.3 5.2e-06 25.9 0.1 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|154151622|ref|YP_001405240.1| - 0.0003 20.4 0.5 0.017 14.6 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|154151622|ref|YP_001405240.1| - 0.002 17.5 0.1 0.0057 16.0 0.0 1.7 2 0 0 2 2 2 1 ATPase MipZ AAA_24 PF13479.6 gi|154151622|ref|YP_001405240.1| - 0.0036 17.0 0.0 0.0051 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|154151622|ref|YP_001405240.1| - 0.0043 16.7 0.1 0.0072 16.0 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|154151622|ref|YP_001405240.1| - 0.018 15.4 0.4 0.27 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|154151622|ref|YP_001405240.1| - 0.14 11.7 0.8 0.57 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain TrkH PF02386.16 gi|154151623|ref|YP_001405241.1| - 6.4e-47 160.1 22.0 1.6e-46 158.8 22.0 1.6 1 1 0 1 1 1 1 Cation transport protein Desulfoferrodox PF01880.18 gi|154151624|ref|YP_001405242.1| - 8.3e-20 71.2 0.3 1.1e-19 70.8 0.3 1.2 1 0 0 1 1 1 1 Desulfoferrodoxin Desulfoferrod_N PF06397.12 gi|154151624|ref|YP_001405242.1| - 3.3e-14 52.2 6.6 5.1e-14 51.6 6.6 1.3 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain DUF4543 PF15076.6 gi|154151624|ref|YP_001405242.1| - 0.077 13.1 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4543) Lactamase_B PF00753.27 gi|154151625|ref|YP_001405243.1| - 4.5e-09 36.6 0.1 4.2e-08 33.4 0.0 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|154151625|ref|YP_001405243.1| - 1.8e-05 24.3 0.1 4e-05 23.2 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|154151625|ref|YP_001405243.1| - 0.00051 20.0 0.0 0.0018 18.2 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain TspO_MBR PF03073.15 gi|154151626|ref|YP_001405244.1| - 2.8e-15 56.6 22.7 3.3e-15 56.3 22.7 1.0 1 0 0 1 1 1 1 TspO/MBR family TIG PF01833.24 gi|154151627|ref|YP_001405245.1| - 9.7e-12 44.8 26.9 4.5e-07 29.9 6.9 3.4 3 2 0 3 3 3 2 IPT/TIG domain MG2 PF01835.19 gi|154151627|ref|YP_001405245.1| - 0.023 15.1 1.6 0.11 13.0 0.0 2.6 3 1 0 3 3 3 0 MG2 domain TPP_enzyme_C PF02775.21 gi|154151629|ref|YP_001405247.1| - 2.4e-30 105.3 0.0 3.5e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|154151629|ref|YP_001405247.1| - 8.3e-11 41.9 0.1 2e-10 40.6 0.1 1.6 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal XFP_N PF09364.10 gi|154151629|ref|YP_001405247.1| - 0.13 11.0 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain TetR_C_27 PF17935.1 gi|154151629|ref|YP_001405247.1| - 0.17 11.9 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain POR_N PF01855.19 gi|154151630|ref|YP_001405248.1| - 1e-47 162.8 0.0 1.7e-47 162.1 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|154151630|ref|YP_001405248.1| - 1.6e-24 86.9 0.1 3.4e-24 85.9 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|154151630|ref|YP_001405248.1| - 0.00023 20.8 0.2 0.00051 19.7 0.2 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|154151630|ref|YP_001405248.1| - 0.00029 21.1 0.1 0.001 19.4 0.0 2.0 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Response_reg PF00072.24 gi|154151631|ref|YP_001405249.1| - 4.2e-18 65.5 0.0 4.8e-18 65.4 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_31 PF13847.6 gi|154151631|ref|YP_001405249.1| - 0.1 12.4 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain DUF1894 PF08979.11 gi|154151632|ref|YP_001405250.1| - 2.2e-37 127.3 0.0 2.5e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF1890 PF09001.11 gi|154151633|ref|YP_001405251.1| - 6.2e-56 188.7 0.6 7.1e-56 188.5 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) CutA1 PF03091.15 gi|154151634|ref|YP_001405252.1| - 8.4e-32 109.0 0.1 9.6e-32 108.8 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Aminotran_1_2 PF00155.21 gi|154151635|ref|YP_001405253.1| - 1.8e-62 211.7 0.0 2e-62 211.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Orn_Arg_deC_N PF02784.16 gi|154151636|ref|YP_001405254.1| - 9.9e-56 188.9 0.0 1.4e-55 188.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|154151636|ref|YP_001405254.1| - 1e-25 89.8 0.0 1.1e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|154151636|ref|YP_001405254.1| - 1.6e-12 47.6 0.1 7.8e-12 45.3 0.2 2.0 2 0 0 2 2 2 1 Alanine racemase, N-terminal domain tRNA_anti-codon PF01336.25 gi|154151637|ref|YP_001405255.1| - 3.7e-12 46.1 0.1 0.00064 19.7 0.2 3.5 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain T2SS-T3SS_pil_N PF13629.6 gi|154151637|ref|YP_001405255.1| - 1.5e-05 24.6 0.1 0.1 12.4 0.3 3.6 3 0 0 3 3 3 3 Pilus formation protein N terminal region Rad51 PF08423.11 gi|154151638|ref|YP_001405256.1| - 4.4e-79 265.4 0.0 5.6e-79 265.0 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|154151638|ref|YP_001405256.1| - 1.9e-14 54.0 0.7 3.9e-14 53.0 0.7 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|154151638|ref|YP_001405256.1| - 6.9e-10 38.7 0.0 1.2e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 KaiC RecA PF00154.21 gi|154151638|ref|YP_001405256.1| - 8.9e-09 35.2 0.0 3.1e-08 33.4 0.0 1.7 1 1 0 1 1 1 1 recA bacterial DNA recombination protein HHH PF00633.23 gi|154151638|ref|YP_001405256.1| - 1e-08 34.6 0.8 0.0033 17.2 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif AAA_25 PF13481.6 gi|154151638|ref|YP_001405256.1| - 1.4e-08 34.5 0.0 2.8e-08 33.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain HHH_2 PF12826.7 gi|154151638|ref|YP_001405256.1| - 4.8e-06 26.6 0.0 1.3e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|154151638|ref|YP_001405256.1| - 1.9e-05 24.8 0.0 4e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.8 gi|154151638|ref|YP_001405256.1| - 0.00018 21.6 0.0 0.0015 18.7 0.0 2.6 3 0 0 3 3 1 1 IMS family HHH motif HHH_3 PF12836.7 gi|154151638|ref|YP_001405256.1| - 0.0004 20.6 0.3 0.023 15.0 0.2 2.6 2 1 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|154151638|ref|YP_001405256.1| - 0.0018 18.0 0.0 0.0098 15.7 0.0 2.2 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda AAA_24 PF13479.6 gi|154151638|ref|YP_001405256.1| - 0.0057 16.4 0.0 0.015 15.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain HHH_8 PF14716.6 gi|154151638|ref|YP_001405256.1| - 0.0069 16.7 0.2 0.31 11.5 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain CobU PF02283.16 gi|154151638|ref|YP_001405256.1| - 0.012 15.2 0.0 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase DUF4332 PF14229.6 gi|154151638|ref|YP_001405256.1| - 0.033 14.4 0.0 0.097 12.9 0.0 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4332) AAA_22 PF13401.6 gi|154151638|ref|YP_001405256.1| - 0.037 14.3 0.0 0.087 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain HhH-GPD PF00730.25 gi|154151638|ref|YP_001405256.1| - 0.069 13.6 0.0 0.14 12.7 0.0 1.5 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein Coq4 PF05019.13 gi|154151638|ref|YP_001405256.1| - 0.1 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Coenzyme Q (ubiquinone) biosynthesis protein Coq4 ATPase_2 PF01637.18 gi|154151638|ref|YP_001405256.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea HTH_24 PF13412.6 gi|154151638|ref|YP_001405256.1| - 0.18 11.4 0.1 0.57 9.8 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Hydrolase_3 PF08282.12 gi|154151639|ref|YP_001405257.1| - 3.8e-32 112.0 1.0 7.6e-20 71.7 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|154151639|ref|YP_001405257.1| - 6.3e-09 36.4 4.3 3.7e-05 24.1 0.1 3.4 2 1 1 4 4 4 3 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|154151639|ref|YP_001405257.1| - 1.1e-08 35.7 3.3 0.0036 17.7 0.0 3.0 1 1 2 3 3 3 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|154151639|ref|YP_001405257.1| - 3.6e-07 30.0 0.0 1.3e-06 28.1 0.0 1.8 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.16 gi|154151639|ref|YP_001405257.1| - 1.8e-05 24.0 0.0 9.3e-05 21.7 0.0 1.9 1 1 0 1 1 1 1 Trehalose-phosphatase Hydrolase_6 PF13344.6 gi|154151639|ref|YP_001405257.1| - 0.0088 16.1 0.0 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase SinI PF08671.10 gi|154151639|ref|YP_001405257.1| - 0.04 13.7 0.0 0.097 12.5 0.0 1.7 1 0 0 1 1 1 0 Anti-repressor SinI PRC PF05239.16 gi|154151640|ref|YP_001405258.1| - 1.2e-11 44.5 0.1 1.4e-11 44.3 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain HrcA_DNA-bdg PF03444.15 gi|154151641|ref|YP_001405259.1| - 8.4e-36 121.5 0.2 1.8e-35 120.4 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|154151641|ref|YP_001405259.1| - 5e-27 94.1 1.9 6.9e-14 52.0 0.2 2.5 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.20 gi|154151641|ref|YP_001405259.1| - 7.7e-07 29.4 0.1 7.9e-06 26.1 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|154151641|ref|YP_001405259.1| - 1.1e-06 28.4 0.0 2.1e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain NOG1_N PF17835.1 gi|154151642|ref|YP_001405260.1| - 1.6e-38 132.2 0.3 2.5e-38 131.6 0.3 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|154151642|ref|YP_001405260.1| - 1.4e-22 79.2 0.0 3.3e-22 78.0 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|154151642|ref|YP_001405260.1| - 5.4e-18 65.1 0.0 1.2e-17 64.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|154151642|ref|YP_001405260.1| - 2.9e-08 33.4 0.0 4.4e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|154151642|ref|YP_001405260.1| - 0.01 15.9 0.1 0.3 11.1 0.0 2.4 1 1 1 2 2 2 0 Dynamin family RsgA_GTPase PF03193.16 gi|154151642|ref|YP_001405260.1| - 0.016 15.1 0.0 0.085 12.8 0.0 2.1 2 1 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|154151642|ref|YP_001405260.1| - 0.069 13.7 0.1 0.28 11.7 0.0 2.1 3 0 0 3 3 3 0 AAA domain Arf PF00025.21 gi|154151642|ref|YP_001405260.1| - 0.14 11.5 0.0 0.58 9.6 0.0 1.9 2 0 0 2 2 2 0 ADP-ribosylation factor family SPP PF06550.11 gi|154151643|ref|YP_001405261.1| - 1.2e-79 267.7 32.1 4.1e-69 233.2 16.4 2.0 1 1 1 2 2 2 2 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|154151643|ref|YP_001405261.1| - 9.9e-10 38.4 12.0 1.7e-09 37.6 12.0 1.3 1 0 0 1 1 1 1 Signal peptide peptidase Presenilin PF01080.17 gi|154151643|ref|YP_001405261.1| - 0.18 10.5 34.3 0.15 10.8 27.2 2.7 1 1 1 2 2 2 0 Presenilin SieB PF14163.6 gi|154151643|ref|YP_001405261.1| - 2.8 7.4 5.8 1.6 8.2 2.9 2.1 1 1 1 2 2 2 0 Super-infection exclusion protein B DUF3481 PF11980.8 gi|154151643|ref|YP_001405261.1| - 8.5 6.2 9.5 0.85 9.4 0.1 3.3 3 0 0 3 3 3 0 C-terminal domain of neuropilin glycoprotein DUF948 PF06103.11 gi|154151644|ref|YP_001405262.1| - 0.006 16.8 0.2 0.011 16.0 0.2 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DUF4131 PF13567.6 gi|154151644|ref|YP_001405262.1| - 0.15 11.7 0.1 0.17 11.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) XPG_I PF00867.18 gi|154151645|ref|YP_001405263.1| - 1.7e-26 92.4 0.0 2.9e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|154151645|ref|YP_001405263.1| - 5.6e-18 65.3 0.0 8.3e-18 64.7 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|154151645|ref|YP_001405263.1| - 0.071 13.7 0.0 0.2 12.3 0.0 1.8 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.16 gi|154151645|ref|YP_001405263.1| - 0.079 12.9 0.0 0.28 11.1 0.0 1.8 1 1 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain PAS_9 PF13426.7 gi|154151646|ref|YP_001405264.1| - 4.9e-19 68.5 0.0 3e-09 37.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.24 gi|154151646|ref|YP_001405264.1| - 8.2e-19 67.8 0.0 2e-18 66.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|154151646|ref|YP_001405264.1| - 3.9e-16 58.7 0.0 8.9e-07 28.8 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|154151646|ref|YP_001405264.1| - 2.1e-15 56.7 0.0 3.1e-06 27.2 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|154151646|ref|YP_001405264.1| - 7.5e-14 51.9 0.2 2e-08 34.4 0.0 3.1 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|154151646|ref|YP_001405264.1| - 1.1e-08 35.6 0.3 6.8e-08 33.0 0.3 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|154151646|ref|YP_001405264.1| - 0.0021 18.0 0.1 0.0056 16.6 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PPAK PF02818.15 gi|154151646|ref|YP_001405264.1| - 0.053 13.7 4.7 5.7 7.2 0.1 2.6 2 0 0 2 2 2 0 PPAK motif MmoB_DmpM PF02406.17 gi|154151646|ref|YP_001405264.1| - 0.066 13.4 0.0 0.22 11.8 0.0 1.9 1 0 0 1 1 1 0 MmoB/DmpM family Inhibitor_I42 PF09394.10 gi|154151647|ref|YP_001405265.1| - 1.6e-21 76.5 0.2 2.6e-21 75.8 0.2 1.4 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 Cation_efflux PF01545.21 gi|154151648|ref|YP_001405266.1| - 2.7e-30 105.6 9.9 3.3e-30 105.3 9.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|154151648|ref|YP_001405266.1| - 2.4e-06 27.6 0.0 4.1e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Phage_holin_3_6 PF07332.11 gi|154151648|ref|YP_001405266.1| - 0.11 12.6 7.8 0.12 12.5 0.0 2.8 3 1 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III PAS PF00989.25 gi|154151649|ref|YP_001405267.1| - 7.6e-41 138.7 0.0 3.3e-15 56.1 0.0 3.8 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|154151649|ref|YP_001405267.1| - 2.2e-32 111.4 0.0 4.8e-13 49.3 0.0 4.1 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.10 gi|154151649|ref|YP_001405267.1| - 2.8e-31 108.0 0.0 7.5e-13 48.7 0.0 3.7 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|154151649|ref|YP_001405267.1| - 3.7e-25 88.3 0.0 1.2e-24 86.7 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.7 gi|154151649|ref|YP_001405267.1| - 3e-21 75.0 0.1 5.8e-09 35.8 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|154151649|ref|YP_001405267.1| - 2.6e-20 72.5 0.0 1.2e-13 51.2 0.0 4.3 4 0 0 4 4 4 3 PAS fold PAS_7 PF12860.7 gi|154151649|ref|YP_001405267.1| - 5.9e-09 36.1 0.2 0.00025 21.2 0.0 4.3 3 2 1 4 4 4 2 PAS fold PAS_10 PF13596.6 gi|154151649|ref|YP_001405267.1| - 1.8e-07 31.7 0.0 2.6e-05 24.8 0.0 2.6 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.26 gi|154151649|ref|YP_001405267.1| - 4.8e-07 30.3 0.0 1.2e-06 29.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|154151649|ref|YP_001405267.1| - 5.9e-06 26.4 0.0 2.8e-05 24.2 0.0 2.2 2 0 0 2 2 2 1 PAS domain JAKMIP_CC3 PF16034.5 gi|154151649|ref|YP_001405267.1| - 0.00085 19.3 0.2 0.0018 18.3 0.2 1.5 1 0 0 1 1 1 1 JAKMIP CC3 domain NMT1_2 PF13379.6 gi|154151650|ref|YP_001405268.1| - 1.6e-13 51.0 0.0 2e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|154151650|ref|YP_001405268.1| - 4.9e-07 29.9 0.0 9.1e-07 29.0 0.0 1.3 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|154151650|ref|YP_001405268.1| - 0.009 15.5 0.0 0.037 13.4 0.0 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 STN PF07660.14 gi|154151650|ref|YP_001405268.1| - 0.015 15.1 0.1 0.057 13.2 0.0 2.0 2 0 0 2 2 2 0 Secretin and TonB N terminus short domain HTH_3 PF01381.22 gi|154151651|ref|YP_001405269.1| - 5.4e-10 39.2 0.1 8.8e-10 38.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 gi|154151651|ref|YP_001405269.1| - 0.00019 21.8 0.0 0.0003 21.2 0.0 1.2 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 gi|154151651|ref|YP_001405269.1| - 0.00043 20.6 0.0 0.00077 19.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|154151651|ref|YP_001405269.1| - 0.0019 18.4 0.0 0.0039 17.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_49 PF18010.1 gi|154151651|ref|YP_001405269.1| - 0.0023 17.7 0.1 0.44 10.5 0.0 2.3 2 0 0 2 2 2 1 Cry35Ab1 HTH C-terminal domain MerR PF00376.23 gi|154151651|ref|YP_001405269.1| - 0.0029 17.4 0.0 0.021 14.6 0.0 2.1 2 0 0 2 2 2 1 MerR family regulatory protein HTH_19 PF12844.7 gi|154151651|ref|YP_001405269.1| - 0.0099 15.9 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|154151651|ref|YP_001405269.1| - 0.012 15.4 0.0 0.028 14.2 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain RHH_3 PF12651.7 gi|154151651|ref|YP_001405269.1| - 0.024 14.6 0.2 7.3 6.6 0.0 2.7 2 1 0 2 2 2 0 Ribbon-helix-helix domain TrmB PF01978.19 gi|154151651|ref|YP_001405269.1| - 0.026 14.4 0.0 0.061 13.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|154151651|ref|YP_001405269.1| - 0.063 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|154151651|ref|YP_001405269.1| - 0.092 12.8 0.1 0.22 11.6 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|154151651|ref|YP_001405269.1| - 0.12 12.0 0.0 0.36 10.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding ABC_tran PF00005.27 gi|154151652|ref|YP_001405270.1| - 4e-13 50.1 0.0 5.9e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154151652|ref|YP_001405270.1| - 1.7e-08 34.6 0.0 0.0016 18.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|154151652|ref|YP_001405270.1| - 0.00019 21.0 0.2 0.0059 16.1 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|154151652|ref|YP_001405270.1| - 0.005 16.6 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|154151652|ref|YP_001405270.1| - 0.016 15.5 0.1 0.11 12.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|154151652|ref|YP_001405270.1| - 0.05 14.0 0.1 0.082 13.3 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain bPH_3 PF14470.6 gi|154151652|ref|YP_001405270.1| - 0.058 13.8 0.1 0.13 12.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial PH domain AAA_7 PF12775.7 gi|154151652|ref|YP_001405270.1| - 0.065 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|154151652|ref|YP_001405270.1| - 0.11 12.3 0.1 0.56 10.1 0.1 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea IIGP PF05049.13 gi|154151652|ref|YP_001405270.1| - 0.13 11.3 0.1 0.19 10.7 0.1 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_23 PF13476.6 gi|154151652|ref|YP_001405270.1| - 0.22 12.0 0.0 0.34 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|154151653|ref|YP_001405271.1| - 4.4e-11 42.7 0.0 6.5e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|154151653|ref|YP_001405271.1| - 0.0018 17.6 0.0 0.0039 16.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin KTI12 PF08433.10 gi|154151653|ref|YP_001405271.1| - 0.0029 17.1 0.0 0.0043 16.5 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 MeaB PF03308.16 gi|154151653|ref|YP_001405271.1| - 0.0037 16.3 0.1 0.16 10.9 0.0 2.3 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|154151653|ref|YP_001405271.1| - 0.0065 16.5 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|154151653|ref|YP_001405271.1| - 0.013 14.8 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|154151653|ref|YP_001405271.1| - 0.025 15.0 0.0 0.048 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|154151653|ref|YP_001405271.1| - 0.031 14.7 0.0 0.053 14.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|154151653|ref|YP_001405271.1| - 0.036 14.0 0.0 0.05 13.5 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|154151653|ref|YP_001405271.1| - 0.049 14.0 0.0 0.079 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|154151653|ref|YP_001405271.1| - 0.077 12.7 0.0 6.9 6.4 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|154151653|ref|YP_001405271.1| - 0.14 12.4 0.0 0.33 11.2 0.0 1.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase FeS PF04060.13 gi|154151654|ref|YP_001405272.1| - 1e-09 37.8 3.0 2.2e-09 36.8 3.0 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster PALP PF00291.25 gi|154151655|ref|YP_001405273.1| - 3.2e-34 118.7 0.8 4.1e-34 118.3 0.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TPP_enzyme_C PF02775.21 gi|154151656|ref|YP_001405274.1| - 2.8e-12 46.7 0.1 9.6e-12 44.9 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|154151656|ref|YP_001405274.1| - 1.5e-10 40.9 0.0 4.8e-10 39.3 0.0 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF2099 PF09872.9 gi|154151657|ref|YP_001405275.1| - 6.4e-101 336.9 1.2 7.7e-101 336.6 1.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) NadA PF02445.16 gi|154151658|ref|YP_001405276.1| - 3.6e-119 397.4 0.0 4.1e-119 397.2 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein ThiS PF02597.20 gi|154151659|ref|YP_001405277.1| - 6e-07 30.0 0.1 6.8e-07 29.8 0.1 1.1 1 0 0 1 1 1 1 ThiS family DUF348 PF03990.14 gi|154151659|ref|YP_001405277.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 G5-linked-Ubiquitin-like domain ATP_bind_3 PF01171.20 gi|154151660|ref|YP_001405278.1| - 1.6e-12 47.5 0.0 2.4e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|154151660|ref|YP_001405278.1| - 7.1e-05 21.8 0.0 9.2e-05 21.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|154151660|ref|YP_001405278.1| - 0.00076 19.2 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|154151660|ref|YP_001405278.1| - 0.0026 16.9 0.0 0.0037 16.4 0.0 1.1 1 0 0 1 1 1 1 NAD synthase zn-ribbon_14 PF16503.5 gi|154151660|ref|YP_001405278.1| - 0.0098 15.4 3.1 0.0098 15.4 3.1 3.1 3 0 0 3 3 3 1 Zinc-ribbon QueC PF06508.13 gi|154151660|ref|YP_001405278.1| - 0.054 13.0 0.0 0.054 13.0 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|154151660|ref|YP_001405278.1| - 0.14 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family RecR PF02132.15 gi|154151660|ref|YP_001405278.1| - 0.58 9.8 9.6 1.1 8.9 2.1 3.4 3 0 0 3 3 3 0 RecR protein FdhD-NarQ PF02634.15 gi|154151661|ref|YP_001405279.1| - 3.3e-65 220.1 0.0 3.9e-65 219.9 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DUF4260 PF14079.6 gi|154151661|ref|YP_001405279.1| - 0.00028 20.8 0.1 0.00058 19.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4260) NAD_synthase PF02540.17 gi|154151662|ref|YP_001405280.1| - 9.4e-08 31.5 0.0 1.5e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|154151662|ref|YP_001405280.1| - 0.00038 20.3 0.0 0.01 15.6 0.0 2.3 1 1 0 1 1 1 1 PP-loop family Asn_synthase PF00733.21 gi|154151662|ref|YP_001405280.1| - 0.0056 16.4 0.0 0.008 15.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|154151662|ref|YP_001405280.1| - 0.01 15.9 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|154151662|ref|YP_001405280.1| - 0.038 12.8 0.0 0.25 10.1 0.0 2.0 2 0 0 2 2 2 0 tRNA methyl transferase QueC PF06508.13 gi|154151662|ref|YP_001405280.1| - 0.056 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|154151662|ref|YP_001405280.1| - 0.16 11.5 0.0 0.33 10.5 0.0 1.5 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) HTH_3 PF01381.22 gi|154151663|ref|YP_001405281.1| - 0.00017 21.5 0.1 0.0019 18.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.6 gi|154151663|ref|YP_001405281.1| - 0.0037 17.0 0.1 0.01 15.6 0.1 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|154151663|ref|YP_001405281.1| - 0.0073 16.4 0.1 0.014 15.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|154151663|ref|YP_001405281.1| - 0.022 14.8 0.2 0.07 13.2 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn helix HTH_1 PF00126.27 gi|154151663|ref|YP_001405281.1| - 0.039 13.9 0.3 0.082 12.9 0.3 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_31 PF13560.6 gi|154151663|ref|YP_001405281.1| - 0.044 14.1 0.1 0.095 13.1 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Lambda_tail_I PF06805.12 gi|154151663|ref|YP_001405281.1| - 0.05 14.0 0.0 0.071 13.5 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I YdaS_antitoxin PF15943.5 gi|154151663|ref|YP_001405281.1| - 0.05 13.5 0.0 0.13 12.2 0.0 1.7 1 1 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 gi|154151663|ref|YP_001405281.1| - 0.067 12.8 0.0 0.21 11.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding P22_Cro PF14549.6 gi|154151663|ref|YP_001405281.1| - 0.075 12.9 0.0 0.13 12.1 0.0 1.5 1 1 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_Tnp_ISL3 PF13542.6 gi|154151663|ref|YP_001405281.1| - 0.094 12.1 0.1 0.26 10.7 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Cro PF09048.10 gi|154151663|ref|YP_001405281.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Cro Aminotran_5 PF00266.19 gi|154151664|ref|YP_001405282.1| - 5.5e-86 288.8 0.1 6.9e-86 288.5 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|154151664|ref|YP_001405282.1| - 1.8e-08 34.0 0.1 2.3e-08 33.7 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|154151664|ref|YP_001405282.1| - 4.1e-07 29.7 0.1 5.8e-07 29.1 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|154151664|ref|YP_001405282.1| - 0.0036 15.9 0.2 0.0051 15.4 0.2 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.19 gi|154151664|ref|YP_001405282.1| - 0.015 14.0 0.1 0.021 13.5 0.1 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Adeno_shaft PF00608.17 gi|154151664|ref|YP_001405282.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Adenoviral fibre protein (repeat/shaft region) NifU_N PF01592.16 gi|154151665|ref|YP_001405283.1| - 2.9e-49 166.5 0.0 3.3e-49 166.3 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain ThiF PF00899.21 gi|154151666|ref|YP_001405284.1| - 1.3e-60 204.8 0.0 1.7e-60 204.4 0.0 1.0 1 0 0 1 1 1 1 ThiF family ThiS PF02597.20 gi|154151667|ref|YP_001405285.1| - 7.9e-14 52.1 0.1 9.4e-14 51.8 0.1 1.1 1 0 0 1 1 1 1 ThiS family MoaE PF02391.17 gi|154151668|ref|YP_001405286.1| - 1.4e-28 99.4 0.5 1.6e-28 99.2 0.5 1.1 1 0 0 1 1 1 1 MoaE protein DNA_RNApol_7kD PF03604.13 gi|154151669|ref|YP_001405287.1| - 5.4e-05 22.8 1.2 0.00013 21.5 1.2 1.7 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|154151669|ref|YP_001405287.1| - 0.00021 21.2 1.9 0.00029 20.7 1.9 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|154151669|ref|YP_001405287.1| - 0.0011 18.6 7.2 0.029 14.1 5.4 2.6 1 1 1 2 2 2 2 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|154151669|ref|YP_001405287.1| - 0.0045 16.7 3.9 0.0049 16.5 2.9 1.7 1 1 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|154151669|ref|YP_001405287.1| - 0.005 16.2 4.8 0.25 10.8 0.1 2.9 3 0 0 3 3 3 2 zinc-ribbon domain zf-tcix PF14952.6 gi|154151669|ref|YP_001405287.1| - 0.0059 16.2 7.1 0.04 13.5 0.3 2.4 2 0 0 2 2 2 1 Putative treble-clef, zinc-finger, Zn-binding A2L_zn_ribbon PF08792.10 gi|154151669|ref|YP_001405287.1| - 0.0066 16.1 1.8 0.015 15.0 1.8 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain zf_UBZ PF18439.1 gi|154151669|ref|YP_001405287.1| - 0.0091 15.6 2.1 1.9 8.2 0.3 2.3 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger IBR PF01485.21 gi|154151669|ref|YP_001405287.1| - 0.022 15.0 2.5 0.022 15.0 2.5 2.1 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain zf-dskA_traR PF01258.17 gi|154151669|ref|YP_001405287.1| - 0.038 13.9 2.8 1.5 8.8 0.3 2.5 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DNA_ligase_ZBD PF03119.16 gi|154151669|ref|YP_001405287.1| - 0.046 13.7 1.2 0.046 13.7 1.2 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain YhfH PF14149.6 gi|154151669|ref|YP_001405287.1| - 0.052 13.5 12.3 0.11 12.5 1.3 3.1 2 1 1 3 3 3 0 YhfH-like protein DZR PF12773.7 gi|154151669|ref|YP_001405287.1| - 0.089 12.8 6.7 0.13 12.4 5.5 1.9 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.6 gi|154151669|ref|YP_001405287.1| - 0.1 12.4 5.8 0.87 9.4 5.8 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|154151669|ref|YP_001405287.1| - 0.15 12.0 6.1 2.9 7.9 6.1 2.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-ACC PF17848.1 gi|154151669|ref|YP_001405287.1| - 0.19 11.9 8.4 2.3 8.4 1.2 2.9 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Desulfoferrod_N PF06397.12 gi|154151669|ref|YP_001405287.1| - 0.47 10.1 0.1 0.47 10.1 0.1 2.6 2 1 1 3 3 3 0 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|154151669|ref|YP_001405287.1| - 0.54 10.4 8.6 0.2 11.8 4.4 2.3 1 1 2 3 3 3 0 Zinc ribbon domain HypA PF01155.19 gi|154151669|ref|YP_001405287.1| - 0.77 9.8 7.9 1.7 8.7 7.0 1.9 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Mu-like_Com PF10122.9 gi|154151669|ref|YP_001405287.1| - 1 8.9 4.5 11 5.5 0.1 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-C4_Topoisom PF01396.19 gi|154151669|ref|YP_001405287.1| - 1.1 9.1 7.2 0.96 9.3 0.5 2.8 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.6 gi|154151669|ref|YP_001405287.1| - 1.4 9.4 9.7 0.79 10.1 7.6 1.9 2 1 0 2 2 1 0 Restriction alleviation protein Lar zf-NADH-PPase PF09297.11 gi|154151669|ref|YP_001405287.1| - 4.7 7.0 8.6 0.25 11.1 2.1 2.3 2 1 1 3 3 2 0 NADH pyrophosphatase zinc ribbon domain Rsm22 PF09243.10 gi|154151670|ref|YP_001405288.1| - 1.3e-07 31.2 0.0 1.8e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.6 gi|154151670|ref|YP_001405288.1| - 6.6e-05 22.8 0.0 0.00013 21.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154151670|ref|YP_001405288.1| - 7.5e-05 22.6 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain AAA_lid_10 PF17872.1 gi|154151670|ref|YP_001405288.1| - 0.17 12.0 0.1 0.29 11.3 0.1 1.3 1 0 0 1 1 1 0 AAA lid domain FeoA PF04023.14 gi|154151670|ref|YP_001405288.1| - 0.17 12.1 0.0 3 8.2 0.0 2.5 3 0 0 3 3 3 0 FeoA domain Pilin_N PF07790.11 gi|154151671|ref|YP_001405289.1| - 2.1e-15 57.4 3.8 2.1e-15 57.4 3.8 4.8 5 1 0 5 5 5 1 Archaeal Type IV pilin, N-terminal MlaC PF05494.12 gi|154151671|ref|YP_001405289.1| - 0.012 15.3 2.0 24 4.7 0.0 4.1 3 1 1 4 4 4 0 MlaC protein CE2_N PF17996.1 gi|154151671|ref|YP_001405289.1| - 2.9 7.9 8.4 13 5.8 0.1 5.0 5 2 1 6 6 6 0 Carbohydrate esterase 2 N-terminal Pilin_N PF07790.11 gi|154151672|ref|YP_001405290.1| - 0.42 11.6 3.2 0.51 11.3 0.1 2.7 3 0 0 3 3 3 0 Archaeal Type IV pilin, N-terminal CDP-OH_P_transf PF01066.21 gi|154151674|ref|YP_001405292.1| - 1.5e-13 51.2 1.0 1.5e-13 51.2 1.0 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Amastin PF07344.11 gi|154151674|ref|YP_001405292.1| - 1.9 8.3 7.2 9 6.1 0.9 2.3 2 0 0 2 2 2 0 Amastin surface glycoprotein AAA_18 PF13238.6 gi|154151675|ref|YP_001405293.1| - 5.7e-20 72.2 0.0 8.8e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|154151675|ref|YP_001405293.1| - 1.5e-06 28.5 0.6 9.2e-06 26.0 0.6 2.0 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|154151675|ref|YP_001405293.1| - 1.9e-05 24.9 0.6 0.0074 16.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain MeaB PF03308.16 gi|154151675|ref|YP_001405293.1| - 0.002 17.2 0.1 0.0061 15.6 0.1 1.7 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Hpr_kinase_C PF07475.12 gi|154151675|ref|YP_001405293.1| - 0.0066 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_17 PF13207.6 gi|154151675|ref|YP_001405293.1| - 0.0067 16.9 0.9 0.31 11.5 0.1 2.3 1 1 1 2 2 2 1 AAA domain CoaE PF01121.20 gi|154151675|ref|YP_001405293.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA_22 PF13401.6 gi|154151675|ref|YP_001405293.1| - 0.012 15.8 0.0 0.021 15.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0180 PF03698.13 gi|154151675|ref|YP_001405293.1| - 0.014 15.6 0.0 1.3 9.2 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) AAA_24 PF13479.6 gi|154151675|ref|YP_001405293.1| - 0.025 14.3 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|154151675|ref|YP_001405293.1| - 0.043 14.2 0.0 0.085 13.3 0.0 1.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|154151675|ref|YP_001405293.1| - 0.051 13.9 0.1 0.066 13.6 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain Viral_helicase1 PF01443.18 gi|154151675|ref|YP_001405293.1| - 0.062 13.0 0.0 0.081 12.7 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.15 gi|154151675|ref|YP_001405293.1| - 0.077 12.9 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|154151675|ref|YP_001405293.1| - 0.098 13.1 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF2002 PF09400.10 gi|154151675|ref|YP_001405293.1| - 0.12 12.4 0.0 0.29 11.2 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2002) KTI12 PF08433.10 gi|154151675|ref|YP_001405293.1| - 0.12 11.7 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_25 PF13481.6 gi|154151675|ref|YP_001405293.1| - 0.13 11.8 0.0 0.46 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain Aminotran_1_2 PF00155.21 gi|154151676|ref|YP_001405294.1| - 2.5e-45 155.2 0.0 2.9e-45 155.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|154151676|ref|YP_001405294.1| - 0.00083 18.4 0.0 0.081 11.9 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Alliinase_C PF04864.13 gi|154151676|ref|YP_001405294.1| - 0.0016 17.4 0.0 0.0065 15.4 0.0 2.0 3 0 0 3 3 3 1 Allinase Mrr_cat PF04471.12 gi|154151676|ref|YP_001405294.1| - 0.06 13.4 0.0 3.3 7.8 0.0 2.5 2 0 0 2 2 2 0 Restriction endonuclease Aminotran_3 PF00202.21 gi|154151677|ref|YP_001405295.1| - 5.5e-102 341.5 0.3 7e-102 341.1 0.3 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 gi|154151677|ref|YP_001405295.1| - 0.003 16.6 0.0 0.0049 15.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|154151677|ref|YP_001405295.1| - 0.028 13.0 0.0 0.044 12.3 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme GMP_synt_C PF00958.22 gi|154151678|ref|YP_001405296.1| - 3e-28 97.7 0.0 6.2e-28 96.7 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|154151678|ref|YP_001405296.1| - 8e-13 48.1 0.0 5.2e-08 32.3 0.0 2.1 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|154151678|ref|YP_001405296.1| - 1.2e-05 24.3 0.1 0.0021 16.9 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Arginosuc_synth PF00764.19 gi|154151678|ref|YP_001405296.1| - 9.8e-05 21.8 0.1 0.0002 20.8 0.0 1.5 2 0 0 2 2 2 1 Arginosuccinate synthase QueC PF06508.13 gi|154151678|ref|YP_001405296.1| - 0.002 17.7 0.0 0.011 15.3 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|154151678|ref|YP_001405296.1| - 0.0054 16.4 0.5 0.0084 15.8 0.5 1.4 1 1 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|154151678|ref|YP_001405296.1| - 0.0063 16.6 0.0 0.0098 15.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|154151678|ref|YP_001405296.1| - 0.011 15.3 0.1 0.031 13.9 0.1 1.7 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PHF12_MRG_bd PF16737.5 gi|154151678|ref|YP_001405296.1| - 2.8 7.7 3.7 1.7 8.5 1.6 1.6 2 0 0 2 2 2 0 PHD finger protein 12 MRG binding domain CTP_synth_N PF06418.14 gi|154151679|ref|YP_001405297.1| - 2.2e-121 404.2 0.2 3.1e-121 403.7 0.2 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|154151679|ref|YP_001405297.1| - 7.3e-55 185.7 0.0 1.2e-54 185.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|154151679|ref|YP_001405297.1| - 6.5e-06 26.1 0.0 0.00011 22.0 0.0 2.7 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|154151679|ref|YP_001405297.1| - 4.2e-05 23.6 0.0 7.3e-05 22.8 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain TPR_2 PF07719.17 gi|154151680|ref|YP_001405298.1| - 1.5e-18 65.3 9.9 2.1e-05 24.3 0.0 5.2 5 1 1 6 6 5 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|154151680|ref|YP_001405298.1| - 7.4e-17 60.4 13.3 1.2e-06 28.1 0.4 5.8 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154151680|ref|YP_001405298.1| - 2.5e-15 55.9 19.5 1.5e-05 24.6 0.6 5.2 3 2 2 5 5 5 4 TPR repeat TPR_8 PF13181.6 gi|154151680|ref|YP_001405298.1| - 2.1e-14 52.4 7.3 0.00054 20.0 0.1 5.0 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154151680|ref|YP_001405298.1| - 2.9e-14 53.4 5.0 2e-05 25.1 0.0 3.8 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154151680|ref|YP_001405298.1| - 2.2e-13 49.8 0.4 0.0022 18.6 0.0 4.8 2 2 3 5 5 5 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154151680|ref|YP_001405298.1| - 7.8e-12 44.3 0.9 5.6e-05 22.9 0.0 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|154151680|ref|YP_001405298.1| - 5.5e-11 42.8 9.5 4.5e-07 30.3 0.5 3.1 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154151680|ref|YP_001405298.1| - 3.5e-10 40.0 6.5 5.6e-05 23.3 0.1 3.6 2 2 0 2 2 2 2 Tetratricopeptide repeat BTAD PF03704.17 gi|154151680|ref|YP_001405298.1| - 8.1e-08 32.8 0.1 3.6e-05 24.2 0.0 2.8 1 1 1 2 2 2 1 Bacterial transcriptional activator domain TPR_6 PF13174.6 gi|154151680|ref|YP_001405298.1| - 3.1e-07 30.6 4.7 0.061 14.0 0.0 4.4 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154151680|ref|YP_001405298.1| - 5.6e-07 29.6 0.0 0.019 15.1 0.0 3.3 2 1 1 3 3 2 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|154151680|ref|YP_001405298.1| - 1.6e-06 28.2 1.5 0.00015 21.9 0.1 2.7 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.6 gi|154151680|ref|YP_001405298.1| - 4.1e-06 26.8 15.8 0.007 16.7 0.4 5.0 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|154151680|ref|YP_001405298.1| - 9.8e-06 25.4 7.4 0.046 13.4 0.2 4.2 3 1 1 4 4 4 2 Tetratricopeptide repeat-like domain NARP1 PF12569.8 gi|154151680|ref|YP_001405298.1| - 0.00035 19.6 1.4 0.18 10.6 0.2 2.1 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|154151680|ref|YP_001405298.1| - 0.00058 19.9 1.1 0.00098 19.1 1.1 1.4 1 0 0 1 1 1 1 Putative TPR-like repeat Fis1_TPR_C PF14853.6 gi|154151680|ref|YP_001405298.1| - 0.00081 19.4 2.0 1.7 8.8 0.1 3.5 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.18 gi|154151680|ref|YP_001405298.1| - 0.0091 16.0 8.1 3.8 7.6 0.1 4.5 4 1 0 4 4 4 1 MIT (microtubule interacting and transport) domain DUF4366 PF14283.6 gi|154151680|ref|YP_001405298.1| - 0.011 15.8 0.1 0.011 15.8 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) TPR_10 PF13374.6 gi|154151680|ref|YP_001405298.1| - 0.018 14.9 1.8 5.1 7.1 0.0 3.8 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_18 PF13512.6 gi|154151680|ref|YP_001405298.1| - 0.019 15.1 0.7 0.06 13.5 0.3 2.0 1 1 0 1 1 1 0 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|154151680|ref|YP_001405298.1| - 0.023 14.1 1.0 0.068 12.6 0.5 2.0 1 1 1 2 2 2 0 Coatomer epsilon subunit DUF3856 PF12968.7 gi|154151680|ref|YP_001405298.1| - 0.023 14.8 1.5 6.8 6.8 0.1 3.1 1 1 1 2 2 2 0 Domain of Unknown Function (DUF3856) TPR_5 PF12688.7 gi|154151680|ref|YP_001405298.1| - 0.043 14.1 0.4 0.24 11.7 0.0 2.2 2 1 0 2 2 2 0 Tetratrico peptide repeat TPR_MalT PF17874.1 gi|154151680|ref|YP_001405298.1| - 0.081 12.3 0.1 0.79 9.0 0.0 2.0 1 1 1 2 2 2 0 MalT-like TPR region DUF4330 PF14221.6 gi|154151680|ref|YP_001405298.1| - 0.11 12.7 1.6 9.6 6.4 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4330) TPR_20 PF14561.6 gi|154151680|ref|YP_001405298.1| - 2.1 8.8 5.6 19 5.7 0.4 3.2 2 1 0 3 3 3 0 Tetratricopeptide repeat DUF5344 PF17279.2 gi|154151680|ref|YP_001405298.1| - 8.6 7.0 7.4 11 6.6 1.5 3.2 2 2 0 2 2 2 0 Family of unknown function (DUF5344) 4HBT PF03061.22 gi|154151681|ref|YP_001405299.1| - 2e-11 44.1 0.0 3.5e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|154151681|ref|YP_001405299.1| - 0.00098 19.5 0.0 0.0012 19.1 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.6 gi|154151681|ref|YP_001405299.1| - 0.016 15.4 0.0 0.028 14.6 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4442) Glycos_transf_2 PF00535.26 gi|154151684|ref|YP_001405302.1| - 2.1e-18 66.7 0.0 2.5e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|154151684|ref|YP_001405302.1| - 1.3e-06 28.5 0.0 1.5e-06 28.3 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF1205 PF06722.12 gi|154151684|ref|YP_001405302.1| - 0.0026 17.8 0.1 2.9 8.0 0.1 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF1205) LuxT_C PF18285.1 gi|154151684|ref|YP_001405302.1| - 0.0083 16.6 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 Tetracycline repressor LuxT C-terminal domain TPR_19 PF14559.6 gi|154151685|ref|YP_001405303.1| - 8.7e-08 32.6 17.1 0.0088 16.5 0.0 7.4 4 2 5 9 9 9 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154151685|ref|YP_001405303.1| - 0.0023 18.6 31.2 2.9 8.9 0.2 9.1 7 2 4 11 11 11 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154151685|ref|YP_001405303.1| - 0.0048 16.9 19.5 5.4 7.4 0.0 7.7 8 1 0 8 8 7 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|154151685|ref|YP_001405303.1| - 0.014 15.6 6.4 2.3 8.5 0.0 4.4 5 1 1 6 6 6 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.6 gi|154151685|ref|YP_001405303.1| - 0.014 15.6 1.7 7 7.1 0.1 5.3 5 1 0 5 5 5 0 Tetratricopeptide repeat TPR_4 PF07721.14 gi|154151685|ref|YP_001405303.1| - 0.023 15.3 27.7 26 5.8 0.0 9.2 9 0 0 9 9 8 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|154151685|ref|YP_001405303.1| - 0.026 14.9 1.3 39 4.9 0.0 5.1 4 0 0 4 4 4 0 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 gi|154151685|ref|YP_001405303.1| - 0.032 13.9 0.1 8.4 6.1 0.0 2.6 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) TPR_12 PF13424.6 gi|154151685|ref|YP_001405303.1| - 0.051 13.9 0.1 0.051 13.9 0.1 8.0 7 1 2 9 9 9 0 Tetratricopeptide repeat Lar_N PF09861.9 gi|154151685|ref|YP_001405303.1| - 0.062 12.4 0.0 0.45 9.6 0.1 2.1 2 0 0 2 2 2 0 Lactate racemase N-terminal domain TPR_16 PF13432.6 gi|154151685|ref|YP_001405303.1| - 0.1 13.3 0.1 0.1 13.3 0.1 6.2 6 1 1 7 7 7 0 Tetratricopeptide repeat TPR_20 PF14561.6 gi|154151685|ref|YP_001405303.1| - 0.22 11.9 8.3 1.8 9.0 0.1 4.5 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|154151685|ref|YP_001405303.1| - 1.7 8.6 18.3 2.1 8.3 0.1 7.1 8 0 0 8 8 8 0 Tetratricopeptide repeat DUF2791 PF10923.8 gi|154151686|ref|YP_001405304.1| - 6.2e-127 423.9 0.0 7.1e-127 423.7 0.0 1.0 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_16 PF13191.6 gi|154151686|ref|YP_001405304.1| - 0.00047 20.6 1.0 0.0015 18.9 1.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|154151686|ref|YP_001405304.1| - 0.0067 16.7 0.0 1 9.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|154151686|ref|YP_001405304.1| - 0.17 11.8 0.0 0.53 10.2 0.0 1.8 2 0 0 2 2 2 0 NACHT domain Y_Y_Y PF07495.13 gi|154151687|ref|YP_001405305.1| - 0.0014 18.5 0.1 0.0031 17.4 0.1 1.6 1 1 0 1 1 1 1 Y_Y_Y domain FlgD_ig PF13860.6 gi|154151687|ref|YP_001405305.1| - 0.1 12.5 0.1 0.59 10.0 0.0 2.1 2 0 0 2 2 2 0 FlgD Ig-like domain Pertactin PF03212.14 gi|154151687|ref|YP_001405305.1| - 0.16 11.9 0.0 0.21 11.5 0.0 1.1 1 0 0 1 1 1 0 Pertactin Histidinol_dh PF00815.20 gi|154151688|ref|YP_001405306.1| - 2.1e-164 547.4 1.2 2.4e-164 547.2 1.2 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase MFS_MOT1 PF16983.5 gi|154151689|ref|YP_001405307.1| - 4.4e-52 175.2 23.3 8.8e-29 100.1 9.9 3.3 4 0 0 4 4 4 2 Molybdate transporter of MFS superfamily COX14 PF14880.6 gi|154151691|ref|YP_001405309.1| - 0.054 13.3 0.1 0.07 13.0 0.1 1.2 1 0 0 1 1 1 0 Cytochrome oxidase c assembly Lactamase_B_2 PF12706.7 gi|154151692|ref|YP_001405310.1| - 4.7e-24 85.0 0.1 6e-24 84.7 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|154151692|ref|YP_001405310.1| - 2.4e-16 60.3 0.2 2e-15 57.4 0.0 2.0 1 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|154151692|ref|YP_001405310.1| - 0.001 19.0 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Response_reg PF00072.24 gi|154151693|ref|YP_001405311.1| - 1.2e-15 57.6 0.0 3.1e-11 43.4 0.0 2.3 2 0 0 2 2 2 2 Response regulator receiver domain FleQ PF06490.11 gi|154151693|ref|YP_001405311.1| - 1e-05 25.8 0.0 0.0018 18.6 0.0 2.5 2 0 0 2 2 2 2 Flagellar regulatory protein FleQ HisKA PF00512.25 gi|154151693|ref|YP_001405311.1| - 1.8e-05 24.6 1.2 5.8e-05 23.1 1.2 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain B12-binding PF02310.19 gi|154151693|ref|YP_001405311.1| - 0.0087 16.1 0.0 2.1 8.4 0.0 2.6 2 0 0 2 2 2 2 B12 binding domain DNA_ligase_A_M PF01068.21 gi|154151695|ref|YP_001405313.1| - 3.1e-50 170.7 0.0 5.3e-50 169.9 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|154151695|ref|YP_001405313.1| - 2.4e-32 112.6 0.0 5.3e-31 108.3 0.0 2.3 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|154151695|ref|YP_001405313.1| - 1.5e-20 73.6 0.0 3.7e-20 72.4 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|154151695|ref|YP_001405313.1| - 9.4e-06 26.0 0.0 1.7e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|154151695|ref|YP_001405313.1| - 0.0092 16.0 0.3 0.075 13.1 0.3 2.4 1 1 0 1 1 1 1 DNA ligase OB-like domain Nre_N PF04894.12 gi|154151696|ref|YP_001405314.1| - 2.9e-79 266.7 0.0 3.8e-79 266.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|154151696|ref|YP_001405314.1| - 3e-34 117.2 0.0 5e-34 116.5 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Prok-RING_1 PF14446.6 gi|154151697|ref|YP_001405315.1| - 6.1e-05 22.9 0.3 0.096 12.6 0.1 2.2 2 0 0 2 2 2 2 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.12 gi|154151697|ref|YP_001405315.1| - 0.00011 22.1 0.5 0.5 10.4 0.1 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|154151697|ref|YP_001405315.1| - 0.00019 20.7 0.9 0.17 11.3 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|154151697|ref|YP_001405315.1| - 0.00029 20.7 0.8 0.0012 18.7 0.8 1.9 1 1 0 1 1 1 1 SprT-like zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|154151697|ref|YP_001405315.1| - 0.0017 18.6 0.1 1.1 9.6 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon Zn-ribbon_8 PF09723.10 gi|154151697|ref|YP_001405315.1| - 0.002 18.2 0.1 1.3 9.2 0.0 2.3 2 0 0 2 2 2 1 Zinc ribbon domain UPF0547 PF10571.9 gi|154151697|ref|YP_001405315.1| - 0.0024 17.9 3.1 0.94 9.6 0.7 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-RING_7 PF02591.15 gi|154151697|ref|YP_001405315.1| - 0.0034 17.5 0.3 0.75 10.0 0.0 2.2 2 0 0 2 2 2 1 C4-type zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|154151697|ref|YP_001405315.1| - 0.0041 16.8 0.9 1.1 9.1 0.0 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|154151697|ref|YP_001405315.1| - 0.0068 15.9 0.2 1.4 8.5 0.0 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding DZR PF12773.7 gi|154151697|ref|YP_001405315.1| - 0.012 15.6 0.1 0.089 12.8 0.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|154151697|ref|YP_001405315.1| - 0.012 15.3 2.4 2.5 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|154151697|ref|YP_001405315.1| - 0.015 15.3 0.0 0.073 13.1 0.0 1.8 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_4 PF13717.6 gi|154151697|ref|YP_001405315.1| - 0.017 15.0 0.3 3.2 7.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|154151697|ref|YP_001405315.1| - 0.017 15.0 0.3 3.4 7.7 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal DUF1610 PF07754.11 gi|154151697|ref|YP_001405315.1| - 0.022 14.7 2.4 2.3 8.3 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) ADK_lid PF05191.14 gi|154151697|ref|YP_001405315.1| - 0.023 14.7 1.4 0.67 10.0 2.4 2.1 1 1 1 2 2 2 0 Adenylate kinase, active site lid zf-NADH-PPase PF09297.11 gi|154151697|ref|YP_001405315.1| - 0.028 14.1 1.1 5.6 6.7 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-C2H2_12 PF18112.1 gi|154151697|ref|YP_001405315.1| - 0.033 14.7 0.4 13 6.4 0.0 2.4 2 1 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain Zn_Tnp_IS1595 PF12760.7 gi|154151697|ref|YP_001405315.1| - 0.035 14.1 2.5 1.1 9.3 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|154151697|ref|YP_001405315.1| - 0.041 13.6 0.4 5.1 6.9 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-HYPF PF07503.12 gi|154151697|ref|YP_001405315.1| - 0.046 13.5 0.3 8.9 6.2 0.1 2.3 2 0 0 2 2 2 0 HypF finger zf-tcix PF14952.6 gi|154151697|ref|YP_001405315.1| - 0.054 13.1 0.6 3.7 7.2 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding OrfB_Zn_ribbon PF07282.11 gi|154151697|ref|YP_001405315.1| - 0.072 13.0 0.1 7.9 6.5 0.0 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Rubredoxin PF00301.20 gi|154151697|ref|YP_001405315.1| - 0.12 12.5 1.8 8.4 6.5 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin Ogr_Delta PF04606.12 gi|154151697|ref|YP_001405315.1| - 0.12 12.4 0.4 2.9 8.0 0.0 2.5 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C2H2_9 PF16293.5 gi|154151697|ref|YP_001405315.1| - 0.12 12.2 0.1 5.3 7.0 0.0 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger (1 copy) zinc_ribbon_5 PF13719.6 gi|154151697|ref|YP_001405315.1| - 0.13 12.1 0.1 8.5 6.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain FYDLN_acid PF09538.10 gi|154151697|ref|YP_001405315.1| - 0.15 12.8 0.2 13 6.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-C2H2_4 PF13894.6 gi|154151697|ref|YP_001405315.1| - 0.15 13.0 1.0 8.3 7.6 0.0 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zf_UBZ PF18439.1 gi|154151697|ref|YP_001405315.1| - 0.16 11.6 0.5 3.9 7.2 0.0 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|154151697|ref|YP_001405315.1| - 0.82 9.5 4.0 10 5.9 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Glyco_trans_1_3 PF13528.6 gi|154151698|ref|YP_001405316.1| - 1.8e-16 60.3 0.0 3.7e-10 39.6 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.16 gi|154151698|ref|YP_001405316.1| - 4.6e-14 52.8 0.0 8.6e-14 51.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_4 PF13439.6 gi|154151698|ref|YP_001405316.1| - 6.2e-10 39.3 0.2 2.3e-09 37.5 0.1 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|154151698|ref|YP_001405316.1| - 2.7e-06 27.9 0.0 7.7e-06 26.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|154151698|ref|YP_001405316.1| - 0.00024 21.2 0.0 0.00056 20.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like UDPGT PF00201.18 gi|154151698|ref|YP_001405316.1| - 0.013 14.3 0.0 0.033 13.0 0.0 1.6 2 0 0 2 2 2 0 UDP-glucoronosyl and UDP-glucosyl transferase PMSR PF01625.21 gi|154151699|ref|YP_001405317.1| - 6.8e-63 211.4 0.1 7.5e-63 211.3 0.1 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Laminin_G_3 PF13385.6 gi|154151700|ref|YP_001405318.1| - 1.6e-15 57.5 20.4 6.6e-13 49.1 11.5 3.0 2 1 0 3 3 3 2 Concanavalin A-like lectin/glucanases superfamily Pilin_N PF07790.11 gi|154151700|ref|YP_001405318.1| - 0.042 14.8 1.8 0.062 14.2 0.3 2.1 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal Sialidase PF02973.16 gi|154151700|ref|YP_001405318.1| - 0.053 13.0 4.3 0.51 9.8 0.3 2.4 2 0 0 2 2 2 0 Sialidase, N-terminal domain COX3 PF00510.18 gi|154151701|ref|YP_001405319.1| - 0.0025 17.7 0.1 0.0029 17.5 0.1 1.3 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III 7TMR-DISM_7TM PF07695.11 gi|154151701|ref|YP_001405319.1| - 0.0044 17.0 3.6 0.0045 16.9 3.6 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling MASE3 PF17159.4 gi|154151701|ref|YP_001405319.1| - 0.0064 16.1 2.4 0.0064 16.1 2.4 1.6 1 1 0 1 1 1 1 Membrane-associated sensor domain Peptidase_M50B PF13398.6 gi|154151701|ref|YP_001405319.1| - 0.013 15.2 2.1 0.015 15.0 2.1 1.1 1 0 0 1 1 1 0 Peptidase M50B-like Peptidase_U4 PF03419.13 gi|154151701|ref|YP_001405319.1| - 0.038 13.3 3.6 0.041 13.2 3.6 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF4267 PF14087.6 gi|154151701|ref|YP_001405319.1| - 0.056 13.5 1.0 0.31 11.1 1.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4267) DUF4131 PF13567.6 gi|154151701|ref|YP_001405319.1| - 3.5 7.2 10.5 6 6.5 6.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF4389 PF14333.6 gi|154151702|ref|YP_001405320.1| - 4.4e-21 74.6 2.2 6.2e-21 74.1 2.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4389) FecCD PF01032.18 gi|154151702|ref|YP_001405320.1| - 0.0087 15.1 0.5 0.011 14.8 0.5 1.1 1 0 0 1 1 1 1 FecCD transport family 2-Hacid_dh_C PF02826.19 gi|154151703|ref|YP_001405321.1| - 3e-67 225.4 0.1 4.4e-67 224.9 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|154151703|ref|YP_001405321.1| - 5.1e-36 123.3 1.4 5.1e-36 123.3 1.4 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|154151703|ref|YP_001405321.1| - 4.3e-11 42.4 0.1 2.1e-10 40.2 0.0 2.3 2 0 0 2 2 2 1 ACT domain IlvN PF07991.12 gi|154151703|ref|YP_001405321.1| - 1.2e-05 24.9 0.1 3.2e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|154151703|ref|YP_001405321.1| - 0.012 15.8 3.4 0.013 15.7 0.6 2.4 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.24 gi|154151703|ref|YP_001405321.1| - 0.015 15.6 0.0 0.046 14.1 0.0 1.9 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACT_4 PF13291.6 gi|154151703|ref|YP_001405321.1| - 0.098 13.3 0.0 0.5 11.0 0.0 2.3 2 0 0 2 2 2 0 ACT domain UDPG_MGDP_dh_C PF03720.15 gi|154151703|ref|YP_001405321.1| - 0.1 13.1 0.4 0.78 10.2 0.1 2.5 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PPDK_N PF01326.19 gi|154151704|ref|YP_001405322.1| - 1.5e-103 346.5 0.1 2.1e-103 346.1 0.1 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|154151704|ref|YP_001405322.1| - 1.8e-79 266.9 0.0 3e-79 266.2 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|154151704|ref|YP_001405322.1| - 1.8e-26 91.7 2.3 6.3e-26 89.9 2.3 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HHH_5 PF14520.6 gi|154151704|ref|YP_001405322.1| - 0.039 14.6 0.3 0.13 12.9 0.3 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF3870 PF12986.7 gi|154151704|ref|YP_001405322.1| - 0.14 12.4 0.3 0.39 11.0 0.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3870) CMV_1a PF12467.8 gi|154151704|ref|YP_001405322.1| - 0.27 11.6 1.1 0.56 10.5 1.1 1.4 1 0 0 1 1 1 0 Cucumber mosaic virus 1a protein family Pyridoxal_deC PF00282.19 gi|154151705|ref|YP_001405323.1| - 3.1e-23 82.1 0.0 2.4e-22 79.2 0.0 2.0 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|154151705|ref|YP_001405323.1| - 1.5e-09 37.3 0.0 4.8e-09 35.6 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|154151705|ref|YP_001405323.1| - 1.5e-06 27.7 0.0 2e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Pribosyltran PF00156.27 gi|154151706|ref|YP_001405324.1| - 7.7e-15 54.8 0.7 9.4e-15 54.5 0.7 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|154151706|ref|YP_001405324.1| - 0.0024 17.4 0.1 0.0039 16.6 0.0 1.4 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|154151706|ref|YP_001405324.1| - 0.041 13.4 0.0 0.064 12.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Diphthamide_syn PF01866.17 gi|154151707|ref|YP_001405325.1| - 5.6e-73 246.0 0.0 6.5e-73 245.8 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein MTS PF05175.14 gi|154151708|ref|YP_001405326.1| - 5.6e-17 61.8 0.0 7.7e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|154151708|ref|YP_001405326.1| - 1.9e-15 57.0 0.2 2.4e-15 56.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|154151708|ref|YP_001405326.1| - 1.2e-11 44.7 0.0 1.9e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154151708|ref|YP_001405326.1| - 4.5e-11 43.3 0.1 1.4e-10 41.8 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|154151708|ref|YP_001405326.1| - 3.2e-08 33.5 0.8 2.9e-07 30.4 0.8 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|154151708|ref|YP_001405326.1| - 1.3e-06 28.9 0.1 3.6e-06 27.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|154151708|ref|YP_001405326.1| - 3.7e-06 26.7 0.0 5.1e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|154151708|ref|YP_001405326.1| - 2.9e-05 24.7 0.0 4.6e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154151708|ref|YP_001405326.1| - 7.1e-05 22.7 0.0 8.9e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|154151708|ref|YP_001405326.1| - 0.00018 21.0 0.0 0.0003 20.3 0.0 1.3 1 1 0 1 1 1 1 RRNA methyltransferase AviRa Met_10 PF02475.16 gi|154151708|ref|YP_001405326.1| - 0.00037 20.3 0.0 0.0005 19.9 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|154151708|ref|YP_001405326.1| - 0.0011 18.6 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|154151708|ref|YP_001405326.1| - 0.0011 18.3 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_16 PF10294.9 gi|154151708|ref|YP_001405326.1| - 0.0034 17.1 0.0 0.0047 16.7 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_32 PF13679.6 gi|154151708|ref|YP_001405326.1| - 0.0053 16.7 0.0 0.0066 16.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.11 gi|154151708|ref|YP_001405326.1| - 0.011 15.3 0.1 0.015 14.8 0.1 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Ubie_methyltran PF01209.18 gi|154151708|ref|YP_001405326.1| - 0.062 12.6 0.0 0.12 11.7 0.0 1.4 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|154151708|ref|YP_001405326.1| - 0.073 13.0 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF43 PF01861.16 gi|154151708|ref|YP_001405326.1| - 0.17 11.1 0.0 0.22 10.7 0.0 1.1 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain TylF PF05711.11 gi|154151710|ref|YP_001405328.1| - 3.9e-25 88.6 0.0 5.4e-25 88.1 0.0 1.2 1 0 0 1 1 1 1 Macrocin-O-methyltransferase (TylF) Methyltransf_24 PF13578.6 gi|154151710|ref|YP_001405328.1| - 1.4e-11 45.4 0.0 5.3e-11 43.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain RasGAP_C PF03836.15 gi|154151710|ref|YP_001405328.1| - 0.021 14.9 0.0 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 RasGAP C-terminus Tetraspanin PF00335.20 gi|154151711|ref|YP_001405329.1| - 1.9 8.2 8.3 2.4 7.8 8.3 1.1 1 0 0 1 1 1 0 Tetraspanin family MFS_1 PF07690.16 gi|154151713|ref|YP_001405331.1| - 2.1e-49 168.3 72.0 1.5e-44 152.4 42.3 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|154151713|ref|YP_001405331.1| - 0.026 13.8 25.9 0.18 11.1 5.1 2.2 2 0 0 2 2 2 0 Uncharacterised MFS-type transporter YbfB DUF2115 PF09888.9 gi|154151715|ref|YP_001405333.1| - 1.8e-57 194.5 0.0 2.1e-57 194.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) DUF4013 PF13197.6 gi|154151716|ref|YP_001405334.1| - 1.9e-28 99.4 32.9 1.9e-28 99.4 32.9 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF4013) SseC PF04888.12 gi|154151716|ref|YP_001405334.1| - 1.7 8.2 2.9 2.4 7.7 2.9 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family DUF1508 PF07411.12 gi|154151717|ref|YP_001405335.1| - 0.15 11.9 1.4 0.3 11.0 0.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1508) PEGA PF08308.11 gi|154151718|ref|YP_001405336.1| - 1.1e-11 44.5 19.8 0.00017 21.4 2.5 3.5 3 0 0 3 3 3 3 PEGA domain Gram_pos_anchor PF00746.21 gi|154151718|ref|YP_001405336.1| - 0.0077 16.1 0.5 0.023 14.6 0.5 1.8 1 0 0 1 1 1 1 LPXTG cell wall anchor motif SPOR PF05036.13 gi|154151718|ref|YP_001405336.1| - 0.025 14.9 0.6 6.6 7.2 0.1 2.5 2 0 0 2 2 2 0 Sporulation related domain TrbC PF04956.13 gi|154151718|ref|YP_001405336.1| - 0.18 12.0 2.0 15 5.9 0.1 2.9 3 0 0 3 3 3 0 TrbC/VIRB2 family Polyoma_coat PF00718.20 gi|154151718|ref|YP_001405336.1| - 0.84 8.9 7.7 3.5 6.8 2.2 2.5 1 1 1 2 2 2 0 Polyomavirus coat protein Glyco_hydro_18 PF00704.28 gi|154151719|ref|YP_001405337.1| - 9.1e-20 71.6 1.5 5.6e-18 65.7 1.5 2.1 1 1 0 1 1 1 1 Glycosyl hydrolases family 18 TGS PF02824.21 gi|154151719|ref|YP_001405337.1| - 0.046 13.8 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 TGS domain MazE_antitoxin PF04014.18 gi|154151720|ref|YP_001405338.1| - 3e-06 27.0 0.4 4.3e-06 26.5 0.4 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin FMN_red PF03358.15 gi|154151721|ref|YP_001405339.1| - 5.3e-21 75.0 0.0 1e-09 38.4 0.0 2.5 2 0 0 2 2 2 2 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154151721|ref|YP_001405339.1| - 9.4e-16 58.1 0.0 4.7e-12 46.0 0.0 2.3 2 0 0 2 2 2 2 Flavodoxin-like fold IspA PF04279.15 gi|154151722|ref|YP_001405340.1| - 0.24 11.6 8.7 0.33 11.1 8.7 1.3 1 1 0 1 1 1 0 Intracellular septation protein A SMC_ScpA PF02616.14 gi|154151723|ref|YP_001405341.1| - 9.1e-15 55.2 0.1 8.7e-12 45.5 0.0 2.5 2 1 0 2 2 2 2 Segregation and condensation protein ScpA SMC_N PF02463.19 gi|154151724|ref|YP_001405342.1| - 5.1e-60 202.6 0.0 1.3e-59 201.3 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|154151724|ref|YP_001405342.1| - 1.1e-28 99.8 0.0 3.3e-28 98.4 0.0 1.9 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_15 PF13175.6 gi|154151724|ref|YP_001405342.1| - 6.9e-14 52.3 5.4 6.9e-14 52.3 5.4 3.8 2 2 1 3 3 3 1 AAA ATPase domain AAA_21 PF13304.6 gi|154151724|ref|YP_001405342.1| - 1.9e-08 34.5 10.7 3.2e-05 23.9 0.6 3.3 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|154151724|ref|YP_001405342.1| - 4e-08 32.9 0.0 1.1e-07 31.5 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|154151724|ref|YP_001405342.1| - 5.8e-06 27.0 83.4 1.8e-05 25.4 43.0 5.3 2 2 1 3 3 2 1 AAA domain APG6_N PF17675.1 gi|154151724|ref|YP_001405342.1| - 0.0049 17.4 2.6 0.0049 17.4 2.6 8.5 3 2 4 7 7 5 2 Apg6 coiled-coil region ATG16 PF08614.11 gi|154151724|ref|YP_001405342.1| - 0.0096 16.2 0.2 0.0096 16.2 0.2 7.3 3 2 3 6 6 6 2 Autophagy protein 16 (ATG16) bZIP_1 PF00170.21 gi|154151724|ref|YP_001405342.1| - 0.013 15.6 4.1 0.013 15.6 4.1 8.1 7 1 1 8 8 8 0 bZIP transcription factor Fib_alpha PF08702.10 gi|154151724|ref|YP_001405342.1| - 0.014 15.5 1.4 0.014 15.5 1.4 6.5 3 2 1 6 6 6 0 Fibrinogen alpha/beta chain family HMW1C_N PF18071.1 gi|154151724|ref|YP_001405342.1| - 0.07 12.9 2.0 0.24 11.2 2.0 2.0 1 0 0 1 1 1 0 HMW1C N-terminal DUF150_C PF17384.2 gi|154151724|ref|YP_001405342.1| - 0.093 12.9 6.6 18 5.5 0.2 5.1 4 1 1 5 5 4 0 RimP C-terminal SH3 domain UPF0184 PF03670.13 gi|154151724|ref|YP_001405342.1| - 0.7 10.3 4.0 26 5.3 0.1 3.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0184) Fez1 PF06818.15 gi|154151724|ref|YP_001405342.1| - 0.97 9.9 74.4 0.53 10.7 16.3 6.2 2 2 3 5 5 4 0 Fez1 LPP PF04728.13 gi|154151724|ref|YP_001405342.1| - 6.8 7.2 17.8 4.5 7.8 0.3 6.9 6 2 1 7 7 6 0 Lipoprotein leucine-zipper VGPC1_C PF16799.5 gi|154151725|ref|YP_001405343.1| - 0.082 12.9 1.7 0.096 12.7 0.2 1.8 2 1 0 2 2 2 0 C-terminal membrane-localisation domain of ion-channel, VCN1 NPV_P10 PF05531.12 gi|154151725|ref|YP_001405343.1| - 0.1 13.0 0.2 0.18 12.3 0.2 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Sec2p PF06428.11 gi|154151725|ref|YP_001405343.1| - 0.14 12.1 5.5 0.62 10.1 5.1 2.0 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p XhlA PF10779.9 gi|154151725|ref|YP_001405343.1| - 0.17 12.1 1.1 0.3 11.3 0.5 1.8 1 1 0 1 1 1 0 Haemolysin XhlA SHMT PF00464.19 gi|154151726|ref|YP_001405344.1| - 3.4e-162 539.6 0.9 4e-162 539.4 0.9 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase DegT_DnrJ_EryC1 PF01041.17 gi|154151726|ref|YP_001405344.1| - 0.0087 15.4 1.1 0.017 14.5 1.1 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family THF_DHG_CYH_C PF02882.19 gi|154151727|ref|YP_001405345.1| - 7.2e-71 236.7 1.3 1.2e-70 236.0 1.3 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|154151727|ref|YP_001405345.1| - 4.3e-33 114.0 0.0 6.9e-33 113.4 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AlaDh_PNT_C PF01262.21 gi|154151727|ref|YP_001405345.1| - 0.031 13.6 0.5 0.052 12.8 0.5 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|154151727|ref|YP_001405345.1| - 0.047 13.7 0.0 0.094 12.8 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.24 gi|154151727|ref|YP_001405345.1| - 0.11 13.0 0.0 0.25 11.8 0.0 1.6 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Pterin_bind PF00809.22 gi|154151728|ref|YP_001405346.1| - 1.4e-43 149.4 0.0 1.7e-43 149.1 0.0 1.1 1 0 0 1 1 1 1 Pterin binding enzyme AP_endonuc_2 PF01261.24 gi|154151728|ref|YP_001405346.1| - 0.00046 19.7 0.0 0.006 16.0 0.0 2.1 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Cas_Cas5d PF09704.10 gi|154151728|ref|YP_001405346.1| - 0.13 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) F420_ligase PF01996.16 gi|154151729|ref|YP_001405347.1| - 2.4e-60 203.9 0.0 2.8e-60 203.7 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Wzz PF02706.15 gi|154151730|ref|YP_001405348.1| - 0.56 10.5 1.9 2.5 8.5 0.6 2.1 2 0 0 2 2 2 0 Chain length determinant protein Methyltransf_25 PF13649.6 gi|154151731|ref|YP_001405349.1| - 3.3e-09 37.3 0.0 7.1e-09 36.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154151731|ref|YP_001405349.1| - 1.1e-08 35.1 0.0 6.2e-08 32.7 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154151731|ref|YP_001405349.1| - 2.5e-07 31.2 0.0 9.3e-07 29.4 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154151731|ref|YP_001405349.1| - 2.5e-05 24.9 0.0 5.5e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|154151731|ref|YP_001405349.1| - 0.0014 18.0 0.0 0.0022 17.4 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|154151731|ref|YP_001405349.1| - 0.002 17.7 0.0 0.0033 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|154151731|ref|YP_001405349.1| - 0.0023 17.7 0.0 0.0044 16.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|154151731|ref|YP_001405349.1| - 0.011 15.1 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Met_10 PF02475.16 gi|154151731|ref|YP_001405349.1| - 0.16 11.7 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|154151731|ref|YP_001405349.1| - 0.24 11.4 0.0 0.39 10.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|154151731|ref|YP_001405349.1| - 0.26 10.5 0.0 0.44 9.8 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF5591 PF17884.1 gi|154151733|ref|YP_001405351.1| - 9e-16 58.1 0.2 1.2e-15 57.8 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) MotA_ExbB PF01618.16 gi|154151734|ref|YP_001405352.1| - 5.2 6.8 6.2 2.4 7.9 3.7 1.6 1 1 1 2 2 2 0 MotA/TolQ/ExbB proton channel family Usp PF00582.26 gi|154151735|ref|YP_001405353.1| - 8e-35 120.4 0.1 9e-35 120.2 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family MFS_1 PF07690.16 gi|154151736|ref|YP_001405354.1| - 1.8e-41 142.2 57.9 1.8e-41 142.2 57.9 3.7 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|154151736|ref|YP_001405354.1| - 1.3e-06 27.5 10.7 1.3e-06 27.5 10.7 3.1 4 0 0 4 4 4 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|154151736|ref|YP_001405354.1| - 0.0013 17.2 1.7 0.0013 17.2 1.7 2.3 2 0 0 2 2 2 1 Transmembrane secretion effector CofC PF01983.16 gi|154151737|ref|YP_001405355.1| - 8.3e-48 162.4 0.0 1.1e-47 162.1 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|154151737|ref|YP_001405355.1| - 3.9e-06 27.3 0.1 5.7e-06 26.8 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Cass2 PF14526.6 gi|154151738|ref|YP_001405356.1| - 5.3e-25 88.3 0.0 6.3e-25 88.1 0.0 1.0 1 0 0 1 1 1 1 Integron-associated effector binding protein GyrI-like PF06445.15 gi|154151738|ref|YP_001405356.1| - 4.2e-14 53.1 0.0 4.7e-14 53.0 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain HATPase_c PF02518.26 gi|154151739|ref|YP_001405357.1| - 2.1e-12 47.5 0.0 3.8e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTC1_2 PF15491.6 gi|154151739|ref|YP_001405357.1| - 0.0013 18.1 0.0 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 CST, telomere maintenance, complex subunit CTC1 SPOB_a PF14689.6 gi|154151739|ref|YP_001405357.1| - 0.0025 17.5 0.0 0.0051 16.5 0.0 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.6 gi|154151739|ref|YP_001405357.1| - 0.015 15.1 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|154151739|ref|YP_001405357.1| - 0.11 12.5 0.0 0.49 10.5 0.0 2.0 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain PMAIP1 PF15150.6 gi|154151739|ref|YP_001405357.1| - 0.15 11.9 0.0 0.44 10.5 0.0 1.7 1 0 0 1 1 1 0 Phorbol-12-myristate-13-acetate-induced Radical_SAM PF04055.21 gi|154151740|ref|YP_001405358.1| - 5.5e-10 39.9 0.1 9.4e-10 39.1 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SAICAR_synt PF01259.18 gi|154151741|ref|YP_001405359.1| - 4.8e-61 206.6 0.1 6.2e-61 206.2 0.1 1.1 1 0 0 1 1 1 1 SAICAR synthetase S1FA PF04689.13 gi|154151741|ref|YP_001405359.1| - 1.8 8.8 4.5 4.6 7.5 4.5 1.7 1 0 0 1 1 1 0 DNA binding protein S1FA FeThRed_B PF02943.15 gi|154151742|ref|YP_001405360.1| - 8.9e-24 83.5 0.3 1e-23 83.3 0.3 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain YhdX PF17444.2 gi|154151742|ref|YP_001405360.1| - 0.11 12.4 0.2 0.18 11.6 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized YhdX-like UDG PF03167.19 gi|154151743|ref|YP_001405361.1| - 3.4e-09 36.9 0.0 3.9e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ABC1 PF03109.16 gi|154151744|ref|YP_001405362.1| - 1.3e-35 122.2 0.0 2.3e-35 121.3 0.0 1.5 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.25 gi|154151744|ref|YP_001405362.1| - 0.00018 21.0 0.0 0.00042 19.8 0.0 1.6 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|154151744|ref|YP_001405362.1| - 0.0016 18.4 0.2 0.01 15.8 0.2 2.0 1 1 0 2 2 2 1 Phosphotransferase enzyme family N6_N4_Mtase PF01555.18 gi|154151745|ref|YP_001405363.1| - 3.6e-12 46.5 0.0 6.9e-08 32.5 0.0 2.2 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|154151745|ref|YP_001405363.1| - 0.00022 21.0 0.0 0.00055 19.7 0.0 1.6 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|154151745|ref|YP_001405363.1| - 0.0079 15.9 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase tRNA-synt_1c PF00749.21 gi|154151747|ref|YP_001405365.1| - 1e-75 254.6 0.0 1.3e-75 254.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|154151747|ref|YP_001405365.1| - 1.4e-21 77.2 0.0 2.4e-20 73.1 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1f PF01921.18 gi|154151747|ref|YP_001405365.1| - 0.017 14.1 0.0 1.9 7.3 0.0 2.5 3 0 0 3 3 3 0 tRNA synthetases class I (K) OHCU_decarbox PF09349.10 gi|154151747|ref|YP_001405365.1| - 0.055 14.0 0.7 2 8.9 0.0 2.3 1 1 1 2 2 2 0 OHCU decarboxylase DUF550 PF04447.12 gi|154151747|ref|YP_001405365.1| - 0.13 12.4 0.2 1.3 9.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF550) polyprenyl_synt PF00348.17 gi|154151748|ref|YP_001405366.1| - 2.4e-66 223.4 0.1 3.9e-66 222.7 0.1 1.3 1 0 0 1 1 1 1 Polyprenyl synthetase Prominin PF05478.11 gi|154151748|ref|YP_001405366.1| - 0.055 11.4 0.0 0.076 11.0 0.0 1.1 1 0 0 1 1 1 0 Prominin RPA_C PF08784.11 gi|154151748|ref|YP_001405366.1| - 0.12 13.0 0.1 0.88 10.3 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal RMMBL PF07521.12 gi|154151749|ref|YP_001405367.1| - 8.7e-10 38.4 0.5 2.2e-09 37.1 0.0 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|154151749|ref|YP_001405367.1| - 8.2e-08 32.5 0.6 1.7e-07 31.4 0.3 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|154151749|ref|YP_001405367.1| - 3.4e-07 30.0 0.1 7.9e-07 28.8 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FMN_dh PF01070.18 gi|154151750|ref|YP_001405368.1| - 1.1e-28 100.2 6.3 5.5e-26 91.4 6.3 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|154151750|ref|YP_001405368.1| - 3.4e-06 26.3 4.8 0.00022 20.3 0.8 3.6 2 1 2 4 4 4 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|154151750|ref|YP_001405368.1| - 0.0019 17.4 2.3 0.007 15.5 2.3 2.0 1 1 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|154151750|ref|YP_001405368.1| - 0.028 13.6 0.1 0.062 12.5 0.1 1.5 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase NMO PF03060.15 gi|154151750|ref|YP_001405368.1| - 0.064 12.6 0.9 0.13 11.7 0.3 1.8 2 0 0 2 2 2 0 Nitronate monooxygenase AA_kinase PF00696.28 gi|154151751|ref|YP_001405369.1| - 3.4e-41 141.4 3.8 3.8e-41 141.3 3.8 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.26 gi|154151752|ref|YP_001405370.1| - 1.9e-17 63.2 0.1 1.9e-17 63.2 0.1 2.0 2 1 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|154151752|ref|YP_001405370.1| - 8e-12 45.4 0.3 2.3e-11 43.9 0.3 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|154151752|ref|YP_001405370.1| - 0.0037 16.8 0.0 0.0072 15.9 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Memo PF01875.17 gi|154151753|ref|YP_001405371.1| - 7.3e-68 228.6 0.0 8.5e-68 228.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein fn1 PF00039.18 gi|154151753|ref|YP_001405371.1| - 0.047 13.9 0.1 0.095 12.9 0.1 1.4 1 0 0 1 1 1 0 Fibronectin type I domain Ribosomal_S2 PF00318.20 gi|154151754|ref|YP_001405372.1| - 1.3e-27 96.4 0.6 2.7e-14 53.0 0.4 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_C PF00113.22 gi|154151755|ref|YP_001405373.1| - 1.5e-71 241.1 0.4 3.9e-71 239.7 0.2 1.7 2 0 0 2 2 2 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|154151755|ref|YP_001405373.1| - 2e-35 121.8 0.1 9.8e-35 119.6 0.1 2.2 1 1 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|154151755|ref|YP_001405373.1| - 4.5e-11 42.7 0.1 7.5e-11 42.0 0.1 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|154151755|ref|YP_001405373.1| - 0.0098 15.1 0.4 0.022 13.9 0.0 1.8 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus RNA_pol_Rpb6 PF01192.22 gi|154151756|ref|YP_001405374.1| - 3.3e-14 52.5 0.2 3.8e-14 52.3 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|154151757|ref|YP_001405375.1| - 6.2e-31 106.5 0.6 6.8e-31 106.4 0.6 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|154151758|ref|YP_001405376.1| - 1.2e-34 119.4 0.3 1.4e-34 119.2 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|154151759|ref|YP_001405377.1| - 5.1e-06 26.8 0.0 0.00021 21.5 0.0 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|154151760|ref|YP_001405378.1| - 4.6e-13 49.0 0.1 5.2e-13 48.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|154151760|ref|YP_001405378.1| - 1.5e-06 28.9 0.1 4.5e-06 27.4 0.1 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|154151761|ref|YP_001405379.1| - 4.8e-28 97.8 0.0 4.5e-27 94.6 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|154151761|ref|YP_001405379.1| - 5.9e-16 57.7 0.0 8.1e-16 57.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_7 PF12838.7 gi|154151761|ref|YP_001405379.1| - 0.00088 19.8 9.0 0.00088 19.8 9.0 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|154151761|ref|YP_001405379.1| - 0.0016 18.5 9.1 0.0016 18.5 9.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|154151761|ref|YP_001405379.1| - 0.0091 16.1 12.4 0.0091 16.1 12.4 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|154151761|ref|YP_001405379.1| - 0.011 15.8 12.8 0.032 14.3 2.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|154151761|ref|YP_001405379.1| - 0.011 15.5 3.5 0.011 15.5 3.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|154151761|ref|YP_001405379.1| - 0.17 12.8 1.1 0.17 12.8 1.1 2.8 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|154151761|ref|YP_001405379.1| - 0.29 11.6 13.4 1.6 9.2 0.1 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|154151761|ref|YP_001405379.1| - 6.3 7.6 22.5 0.44 11.2 1.8 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Ribosomal_S11 PF00411.19 gi|154151762|ref|YP_001405380.1| - 5.8e-48 161.9 9.1 2.5e-47 159.8 9.1 1.7 1 1 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|154151762|ref|YP_001405380.1| - 0.0097 15.7 0.7 0.012 15.3 0.7 1.2 1 0 0 1 1 1 1 Pilus biogenesis CpaD protein (pilus_cpaD) BKACE PF05853.12 gi|154151762|ref|YP_001405380.1| - 0.051 12.9 0.4 0.063 12.6 0.4 1.1 1 0 0 1 1 1 0 beta-keto acid cleavage enzyme S4 PF01479.25 gi|154151763|ref|YP_001405381.1| - 1.3e-15 56.8 0.2 2.9e-15 55.7 0.2 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|154151763|ref|YP_001405381.1| - 8.8e-07 29.8 2.1 2.2e-06 28.5 1.1 1.9 2 0 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.22 gi|154151764|ref|YP_001405382.1| - 8.1e-40 136.2 2.5 9.4e-40 136.0 2.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 Isochorismatase PF00857.20 gi|154151765|ref|YP_001405383.1| - 8.4e-39 133.5 0.0 9.5e-39 133.4 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Septin PF00735.18 gi|154151765|ref|YP_001405383.1| - 0.051 12.8 0.0 0.074 12.3 0.0 1.2 1 0 0 1 1 1 0 Septin TauE PF01925.19 gi|154151766|ref|YP_001405384.1| - 4.4e-41 141.1 31.1 5.1e-41 140.8 31.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3169 PF11368.8 gi|154151766|ref|YP_001405384.1| - 8.2 5.9 6.7 5 6.6 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) CBS PF00571.28 gi|154151767|ref|YP_001405385.1| - 5.2e-31 106.9 10.5 4.2e-09 36.7 0.2 4.2 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.14 gi|154151767|ref|YP_001405385.1| - 0.073 13.5 1.3 12 6.4 0.1 3.5 4 1 1 5 5 5 0 Ribosomal protein L9, C-terminal domain ArenaCapSnatch PF17296.2 gi|154151767|ref|YP_001405385.1| - 0.082 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Arenavirus cap snatching domain CBS PF00571.28 gi|154151768|ref|YP_001405386.1| - 2.3e-47 159.2 9.6 1.1e-12 48.2 0.2 4.2 4 0 0 4 4 4 4 CBS domain Peptidase_S51 PF03575.17 gi|154151768|ref|YP_001405386.1| - 0.18 11.4 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 CBS PF00571.28 gi|154151769|ref|YP_001405387.1| - 5.9e-33 113.1 6.6 1.4e-13 51.0 1.7 4.1 4 0 0 4 4 4 4 CBS domain Herpes_TK PF00693.18 gi|154151769|ref|YP_001405387.1| - 0.054 12.7 0.0 0.084 12.1 0.0 1.3 1 0 0 1 1 1 0 Thymidine kinase from herpesvirus DUF1133 PF06576.11 gi|154151769|ref|YP_001405387.1| - 0.072 12.5 0.0 0.16 11.3 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1133) CBS PF00571.28 gi|154151770|ref|YP_001405388.1| - 2.5e-26 91.9 4.3 2e-17 63.3 0.8 2.4 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|154151770|ref|YP_001405388.1| - 0.01 16.1 0.5 0.036 14.3 0.1 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain MMR_HSR1 PF01926.23 gi|154151771|ref|YP_001405389.1| - 5.1e-15 55.5 0.0 6.8e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|154151771|ref|YP_001405389.1| - 1e-08 34.9 0.5 0.0077 15.8 0.0 3.5 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|154151771|ref|YP_001405389.1| - 2.3e-07 30.5 0.0 0.0027 17.2 0.0 2.6 2 1 0 2 2 2 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|154151771|ref|YP_001405389.1| - 3.1e-05 23.6 0.1 0.0004 19.9 0.1 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|154151771|ref|YP_001405389.1| - 9.7e-05 22.3 0.0 0.13 12.1 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase AAA PF00004.29 gi|154151771|ref|YP_001405389.1| - 0.00037 20.9 0.0 0.024 15.1 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SRPRB PF09439.10 gi|154151771|ref|YP_001405389.1| - 0.00049 19.6 0.0 0.32 10.4 0.0 2.4 2 1 0 2 2 2 2 Signal recognition particle receptor beta subunit RNA_helicase PF00910.22 gi|154151771|ref|YP_001405389.1| - 0.0014 19.0 0.0 0.0025 18.2 0.0 1.4 1 0 0 1 1 1 1 RNA helicase Roc PF08477.13 gi|154151771|ref|YP_001405389.1| - 0.0021 18.3 0.0 0.14 12.4 0.0 2.2 1 1 1 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|154151771|ref|YP_001405389.1| - 0.0053 17.3 0.0 0.01 16.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|154151771|ref|YP_001405389.1| - 0.007 16.1 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 gi|154151771|ref|YP_001405389.1| - 0.0072 16.4 0.0 0.96 9.5 0.0 2.2 1 1 1 2 2 2 1 Dynamin family Parvo_NS1 PF01057.17 gi|154151771|ref|YP_001405389.1| - 0.011 14.8 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 MMR_HSR1_Xtn PF16897.5 gi|154151771|ref|YP_001405389.1| - 0.013 15.5 0.0 0.022 14.8 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain RuvB_N PF05496.12 gi|154151771|ref|YP_001405389.1| - 0.021 14.6 0.0 0.049 13.4 0.0 1.6 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|154151771|ref|YP_001405389.1| - 0.051 14.0 0.0 0.08 13.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|154151771|ref|YP_001405389.1| - 0.051 13.5 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TniB PF05621.11 gi|154151771|ref|YP_001405389.1| - 0.052 12.9 0.0 0.37 10.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein ABC_tran PF00005.27 gi|154151771|ref|YP_001405389.1| - 0.055 14.0 0.0 0.074 13.6 0.0 1.4 1 1 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|154151771|ref|YP_001405389.1| - 0.058 13.3 0.0 0.23 11.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Septin PF00735.18 gi|154151771|ref|YP_001405389.1| - 0.059 12.6 0.0 0.075 12.3 0.0 1.2 1 0 0 1 1 1 0 Septin AAA_28 PF13521.6 gi|154151771|ref|YP_001405389.1| - 0.065 13.5 0.0 0.23 11.7 0.0 1.8 1 1 1 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|154151771|ref|YP_001405389.1| - 0.088 12.6 0.0 4 7.2 0.0 2.6 2 1 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 gi|154151771|ref|YP_001405389.1| - 0.094 12.3 0.0 0.14 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain PPV_E1_C PF00519.17 gi|154151771|ref|YP_001405389.1| - 0.16 10.7 0.0 0.27 10.0 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase NB-ARC PF00931.22 gi|154151771|ref|YP_001405389.1| - 0.21 10.8 0.0 0.32 10.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF2072 PF09845.9 gi|154151772|ref|YP_001405390.1| - 1.8e-42 144.8 3.4 2.1e-42 144.5 3.4 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein DUF2175 PF09943.9 gi|154151772|ref|YP_001405390.1| - 0.0017 18.6 1.1 0.0048 17.2 0.1 2.1 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2175) zinc_ribbon_2 PF13240.6 gi|154151772|ref|YP_001405390.1| - 0.011 15.4 4.7 0.026 14.2 4.7 1.6 1 0 0 1 1 1 0 zinc-ribbon domain AnfO_nitrog PF09582.10 gi|154151772|ref|YP_001405390.1| - 0.033 13.5 1.3 0.11 11.8 1.3 1.8 1 1 0 1 1 1 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) DUF1451 PF07295.11 gi|154151772|ref|YP_001405390.1| - 0.045 13.8 1.1 0.045 13.8 1.1 1.8 2 0 0 2 2 2 0 Zinc-ribbon containing domain HypA PF01155.19 gi|154151772|ref|YP_001405390.1| - 0.15 12.1 2.0 0.24 11.4 0.5 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_S13_N PF08069.12 gi|154151774|ref|YP_001405392.1| - 1.6e-26 92.1 0.2 3.2e-26 91.1 0.2 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|154151774|ref|YP_001405392.1| - 6e-12 45.6 0.1 9.2e-12 45.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 DHHA1 PF02272.19 gi|154151775|ref|YP_001405393.1| - 6.9e-10 39.5 0.0 1.4e-09 38.4 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|154151775|ref|YP_001405393.1| - 0.018 15.3 0.1 0.033 14.4 0.1 1.7 1 1 0 1 1 1 0 DHH family Pcc1 PF09341.10 gi|154151776|ref|YP_001405394.1| - 0.036 14.2 0.1 0.047 13.8 0.1 1.2 1 0 0 1 1 1 0 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.18 gi|154151777|ref|YP_001405395.1| - 7.9e-57 192.1 2.1 9.8e-57 191.8 2.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family RNA_pol_Rpb2_4 PF04566.13 gi|154151777|ref|YP_001405395.1| - 0.046 14.0 0.3 9.7 6.6 0.0 2.4 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 4 Bactofilin PF04519.13 gi|154151778|ref|YP_001405396.1| - 9.6e-11 41.8 10.4 4.2e-09 36.6 0.9 3.3 2 1 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|154151778|ref|YP_001405396.1| - 0.00013 21.5 14.2 0.0029 17.3 0.6 5.8 4 2 0 5 5 5 2 Bacterial transferase hexapeptide (six repeats) MinC_C PF03775.16 gi|154151778|ref|YP_001405396.1| - 0.54 10.3 5.8 0.22 11.6 1.5 2.3 2 0 0 2 2 2 0 Septum formation inhibitor MinC, C-terminal domain FapA PF03961.13 gi|154151778|ref|YP_001405396.1| - 0.83 8.2 9.4 0.3 9.6 4.8 2.0 2 0 0 2 2 2 0 Flagellar Assembly Protein A TehB PF03848.14 gi|154151779|ref|YP_001405397.1| - 0.05 13.0 0.1 0.084 12.3 0.1 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB HxlR PF01638.17 gi|154151780|ref|YP_001405398.1| - 9.3e-23 79.9 0.4 1.2e-22 79.6 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|154151780|ref|YP_001405398.1| - 0.0009 19.3 0.0 0.0013 18.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|154151780|ref|YP_001405398.1| - 0.0023 17.6 0.0 0.0026 17.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) DUF2513 PF10711.9 gi|154151780|ref|YP_001405398.1| - 0.0035 17.6 0.1 0.0048 17.2 0.1 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_5 PF01022.20 gi|154151780|ref|YP_001405398.1| - 0.0043 16.9 0.1 0.007 16.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|154151780|ref|YP_001405398.1| - 0.024 14.2 0.1 0.059 12.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|154151780|ref|YP_001405398.1| - 0.041 13.9 0.1 0.056 13.4 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|154151780|ref|YP_001405398.1| - 0.092 12.7 0.2 0.16 12.0 0.2 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DUF1957 PF09210.11 gi|154151780|ref|YP_001405398.1| - 0.13 12.6 0.0 0.19 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1957) Prismane PF03063.20 gi|154151781|ref|YP_001405399.1| - 6.5e-164 546.4 0.0 7.3e-164 546.2 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Rnk_N PF14760.6 gi|154151781|ref|YP_001405399.1| - 0.13 12.8 0.7 9.7 6.8 0.0 2.7 2 0 0 2 2 2 0 Rnk N-terminus DEAD PF00270.29 gi|154151782|ref|YP_001405400.1| - 1.3e-19 70.6 0.0 2.6e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|154151782|ref|YP_001405400.1| - 5.4e-14 52.5 0.0 1.1e-13 51.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|154151782|ref|YP_001405400.1| - 1.6e-07 31.4 0.0 3.9e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HTH_24 PF13412.6 gi|154151783|ref|YP_001405401.1| - 4.3e-08 32.6 0.0 1.2e-07 31.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|154151783|ref|YP_001405401.1| - 4.3e-08 32.9 0.0 9.9e-08 31.8 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|154151783|ref|YP_001405401.1| - 1.7e-06 27.9 0.1 5.2e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|154151783|ref|YP_001405401.1| - 4.3e-06 26.6 1.2 1.3e-05 25.1 0.1 2.3 3 0 0 3 3 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|154151783|ref|YP_001405401.1| - 6.2e-06 26.1 0.0 1.6e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|154151783|ref|YP_001405401.1| - 0.00023 21.0 0.0 0.00057 19.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|154151783|ref|YP_001405401.1| - 0.00028 21.2 0.1 0.00064 20.0 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.6 gi|154151783|ref|YP_001405401.1| - 0.00029 20.6 0.1 0.00058 19.6 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|154151783|ref|YP_001405401.1| - 0.0011 18.7 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_3 PF01381.22 gi|154151783|ref|YP_001405401.1| - 0.0019 18.2 0.1 0.0046 17.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix Fe_dep_repress PF01325.19 gi|154151783|ref|YP_001405401.1| - 0.0026 17.9 0.0 0.0062 16.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|154151783|ref|YP_001405401.1| - 0.0033 17.2 0.0 0.0054 16.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_45 PF14947.6 gi|154151783|ref|YP_001405401.1| - 0.0034 17.3 0.0 0.0064 16.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix GntR PF00392.21 gi|154151783|ref|YP_001405401.1| - 0.0037 16.9 0.6 0.0085 15.7 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family AbiEi_4 PF13338.6 gi|154151783|ref|YP_001405401.1| - 0.0042 17.2 0.0 0.018 15.2 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin HTH_13 PF11972.8 gi|154151783|ref|YP_001405401.1| - 0.0072 16.4 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_10 PF04967.12 gi|154151783|ref|YP_001405401.1| - 0.019 14.7 0.0 0.051 13.4 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain TrmB PF01978.19 gi|154151783|ref|YP_001405401.1| - 0.023 14.5 0.2 0.075 12.9 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|154151783|ref|YP_001405401.1| - 0.027 15.0 0.2 0.094 13.2 0.0 2.0 3 0 0 3 3 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|154151783|ref|YP_001405401.1| - 0.034 14.3 0.1 0.083 13.0 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.12 gi|154151783|ref|YP_001405401.1| - 0.048 14.0 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein HTH_1 PF00126.27 gi|154151783|ref|YP_001405401.1| - 0.059 13.3 0.1 0.27 11.2 0.1 2.2 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Mnd1 PF03962.15 gi|154151783|ref|YP_001405401.1| - 0.062 13.6 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Mnd1 HTH domain HTH_29 PF13551.6 gi|154151783|ref|YP_001405401.1| - 0.11 12.5 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_1 PF01527.20 gi|154151783|ref|YP_001405401.1| - 0.13 12.6 0.1 0.23 11.8 0.1 1.5 1 0 0 1 1 1 0 Transposase HTH_20 PF12840.7 gi|154151783|ref|YP_001405401.1| - 0.14 12.3 2.2 3.1 7.9 0.0 3.3 4 0 0 4 4 3 0 Helix-turn-helix domain HTH_Mga PF08280.11 gi|154151783|ref|YP_001405401.1| - 0.15 12.1 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Mrr_N PF14338.6 gi|154151783|ref|YP_001405401.1| - 0.16 12.1 0.1 1.9 8.7 0.0 2.2 1 1 1 2 2 2 0 Mrr N-terminal domain RPA_C PF08784.11 gi|154151783|ref|YP_001405401.1| - 0.17 12.5 0.0 0.33 11.6 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal ArsR PF09824.9 gi|154151784|ref|YP_001405402.1| - 8.6e-67 223.7 0.0 9.8e-67 223.5 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_24 PF13412.6 gi|154151784|ref|YP_001405402.1| - 0.084 12.4 0.0 2.4 7.8 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sua5_yciO_yrdC PF01300.18 gi|154151785|ref|YP_001405403.1| - 7.8e-30 103.7 0.0 1.2e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination HypF_C PF17788.1 gi|154151785|ref|YP_001405403.1| - 1.5e-25 89.8 0.0 2.9e-25 88.9 0.0 1.4 1 0 0 1 1 1 1 HypF Kae1-like domain zf-HYPF PF07503.12 gi|154151785|ref|YP_001405403.1| - 3.7e-25 87.4 10.0 1e-13 50.8 2.9 2.6 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.18 gi|154151785|ref|YP_001405403.1| - 3.4e-19 69.0 0.0 6.3e-19 68.2 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|154151785|ref|YP_001405403.1| - 3.6e-11 43.3 0.1 2.9e-07 30.5 0.0 2.3 2 0 0 2 2 2 2 Glycoprotease family Carbam_trans_N PF02543.15 gi|154151785|ref|YP_001405403.1| - 0.001 18.8 0.3 0.0034 17.1 0.0 1.9 2 0 0 2 2 2 1 Carbamoyltransferase N-terminus BcrAD_BadFG PF01869.20 gi|154151785|ref|YP_001405403.1| - 0.032 13.7 0.0 0.06 12.8 0.0 1.4 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Fumble PF03630.14 gi|154151785|ref|YP_001405403.1| - 0.17 11.0 0.0 0.25 10.5 0.0 1.2 1 0 0 1 1 1 0 Fumble DZR PF12773.7 gi|154151785|ref|YP_001405403.1| - 0.23 11.5 3.1 7.1 6.7 0.0 2.5 2 0 0 2 2 2 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|154151785|ref|YP_001405403.1| - 2 8.9 7.2 0.2 12.1 1.0 2.4 2 1 0 2 2 2 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|154151785|ref|YP_001405403.1| - 2.8 8.0 5.4 22 5.1 2.5 2.7 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|154151785|ref|YP_001405403.1| - 7.4 6.6 8.1 23 5.0 3.7 2.5 2 0 0 2 2 2 0 SprT-like zinc ribbon domain FYVE PF01363.21 gi|154151785|ref|YP_001405403.1| - 7.9 6.7 6.1 0.91 9.7 0.5 2.2 2 1 0 3 3 3 0 FYVE zinc finger Pox_D5 PF03288.16 gi|154151786|ref|YP_001405404.1| - 3.4e-05 24.3 0.0 5.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Poxvirus D5 protein-like RFX_DNA_binding PF02257.15 gi|154151786|ref|YP_001405404.1| - 0.012 16.3 0.0 0.018 15.7 0.0 1.3 1 0 0 1 1 1 0 RFX DNA-binding domain CCDC154 PF15450.6 gi|154151786|ref|YP_001405404.1| - 0.034 12.7 0.2 0.041 12.4 0.2 1.0 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 154 bZIP_2 PF07716.15 gi|154151786|ref|YP_001405404.1| - 0.13 12.4 1.0 0.23 11.6 1.0 1.4 1 0 0 1 1 1 0 Basic region leucine zipper Retrotrans_gag PF03732.17 gi|154151786|ref|YP_001405404.1| - 0.16 12.2 0.3 0.3 11.4 0.2 1.6 2 1 0 2 2 2 0 Retrotransposon gag protein Radical_SAM PF04055.21 gi|154151787|ref|YP_001405405.1| - 6.9e-26 91.6 0.0 9e-26 91.2 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|154151787|ref|YP_001405405.1| - 0.0012 19.0 0.0 0.0025 18.0 0.0 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Ribosomal_60s PF00428.19 gi|154151788|ref|YP_001405406.1| - 6e-18 65.2 16.3 7.7e-18 64.9 16.3 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|154151788|ref|YP_001405406.1| - 0.00011 22.3 3.1 0.00015 21.9 3.1 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain Ribosomal_L10 PF00466.20 gi|154151789|ref|YP_001405407.1| - 7e-24 83.9 0.0 1.3e-23 83.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|154151789|ref|YP_001405407.1| - 8.6e-21 73.7 0.6 1.5e-20 73.0 0.6 1.4 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L1 PF00687.21 gi|154151790|ref|YP_001405408.1| - 5.4e-47 160.2 0.0 6.6e-47 159.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Pup PF05639.11 gi|154151790|ref|YP_001405408.1| - 0.18 12.7 0.0 0.4 11.6 0.0 1.6 1 0 0 1 1 1 0 Pup-like protein Ribosomal_L11_N PF03946.14 gi|154151791|ref|YP_001405409.1| - 1.2e-24 85.9 1.0 1.2e-24 85.9 1.0 2.4 3 0 0 3 3 3 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|154151791|ref|YP_001405409.1| - 1.8e-19 70.0 0.7 3.2e-19 69.2 0.7 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Peptidase_M23_N PF18421.1 gi|154151791|ref|YP_001405409.1| - 0.035 14.0 0.2 0.063 13.2 0.2 1.4 1 0 0 1 1 1 0 Peptidase family M23 N-terminal domain Yip1 PF04893.17 gi|154151792|ref|YP_001405410.1| - 0.0057 16.4 3.7 0.0057 16.4 3.7 2.3 2 0 0 2 2 2 2 Yip1 domain Saf_2TM PF18303.1 gi|154151792|ref|YP_001405410.1| - 0.049 13.2 0.6 0.049 13.2 0.6 2.9 2 1 1 3 3 3 0 SAVED-fused 2TM effector domain Acetyltransf_3 PF13302.7 gi|154151793|ref|YP_001405411.1| - 5.2e-22 79.0 0.0 7e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|154151793|ref|YP_001405411.1| - 1.1e-08 35.4 0.1 3.6e-08 33.6 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family TM2 PF05154.16 gi|154151793|ref|YP_001405411.1| - 0.061 13.7 0.1 0.12 12.7 0.1 1.4 1 0 0 1 1 1 0 TM2 domain Acetyltransf_8 PF13523.6 gi|154151793|ref|YP_001405411.1| - 0.084 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ABC_tran PF00005.27 gi|154151794|ref|YP_001405412.1| - 3.3e-28 98.9 0.0 4.8e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154151794|ref|YP_001405412.1| - 4.6e-11 43.1 0.1 3.7e-07 30.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|154151794|ref|YP_001405412.1| - 1.2e-05 26.0 0.0 3e-05 24.6 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|154151794|ref|YP_001405412.1| - 1.8e-05 25.4 0.0 4.5e-05 24.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|154151794|ref|YP_001405412.1| - 0.0078 15.9 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|154151794|ref|YP_001405412.1| - 0.052 13.5 0.0 0.12 12.3 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA PF00004.29 gi|154151794|ref|YP_001405412.1| - 0.056 13.9 0.2 0.41 11.1 0.2 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|154151794|ref|YP_001405412.1| - 0.058 13.0 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|154151794|ref|YP_001405412.1| - 0.13 12.6 0.0 0.34 11.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|154151794|ref|YP_001405412.1| - 0.15 11.5 0.0 16 4.9 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MukB PF04310.12 gi|154151794|ref|YP_001405412.1| - 0.15 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_30 PF13604.6 gi|154151794|ref|YP_001405412.1| - 0.15 11.7 0.1 0.35 10.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|154151795|ref|YP_001405413.1| - 4.5e-23 81.8 21.3 7e-23 81.2 21.3 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|154151795|ref|YP_001405413.1| - 1.1e-10 41.2 28.7 5.6e-10 38.9 28.7 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|154151795|ref|YP_001405413.1| - 1.5e-05 24.4 12.5 1.5e-05 24.4 12.5 2.1 1 1 0 2 2 2 1 ABC-2 family transporter protein CcmB PF03379.13 gi|154151795|ref|YP_001405413.1| - 0.084 12.4 15.9 0.044 13.3 13.7 1.6 1 1 0 1 1 1 0 CcmB protein MFS_1 PF07690.16 gi|154151796|ref|YP_001405414.1| - 6.8e-44 150.2 48.6 6.8e-44 150.2 48.6 3.6 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|154151796|ref|YP_001405414.1| - 6e-06 25.4 8.8 6e-06 25.4 8.8 3.0 3 0 0 3 3 3 2 Sugar (and other) transporter PUCC PF03209.15 gi|154151796|ref|YP_001405414.1| - 1.7e-05 24.1 12.4 4.1e-05 22.8 2.2 2.5 2 0 0 2 2 2 2 PUCC protein MFS_3 PF05977.13 gi|154151796|ref|YP_001405414.1| - 5.7e-05 21.7 1.1 5.7e-05 21.7 1.1 3.0 3 1 0 3 3 3 2 Transmembrane secretion effector DUF3040 PF11239.8 gi|154151796|ref|YP_001405414.1| - 0.27 11.5 0.1 0.27 11.5 0.1 5.0 5 2 2 7 7 7 0 Protein of unknown function (DUF3040) Methyltransf_25 PF13649.6 gi|154151797|ref|YP_001405415.1| - 1.3e-18 67.5 0.0 1.9e-18 66.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154151797|ref|YP_001405415.1| - 4.9e-15 56.0 0.0 7.7e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154151797|ref|YP_001405415.1| - 1.2e-13 51.7 0.0 1.7e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154151797|ref|YP_001405415.1| - 2.6e-13 50.1 0.0 3.3e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154151797|ref|YP_001405415.1| - 2.5e-12 46.8 0.0 3.2e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|154151797|ref|YP_001405415.1| - 3.9e-11 42.7 0.0 5.7e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.11 gi|154151797|ref|YP_001405415.1| - 6.6e-11 42.3 0.0 1.2e-10 41.4 0.0 1.4 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.14 gi|154151797|ref|YP_001405415.1| - 4.4e-06 26.4 0.0 6.3e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|154151797|ref|YP_001405415.1| - 0.0015 17.9 0.0 0.0018 17.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|154151797|ref|YP_001405415.1| - 0.0032 16.9 0.0 0.0044 16.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|154151797|ref|YP_001405415.1| - 0.0088 15.4 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|154151797|ref|YP_001405415.1| - 0.028 14.0 0.0 0.036 13.7 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|154151797|ref|YP_001405415.1| - 0.031 14.3 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|154151797|ref|YP_001405415.1| - 0.043 13.4 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF169 PF02596.15 gi|154151798|ref|YP_001405416.1| - 5.7e-37 127.7 0.0 6.5e-37 127.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 DUF169 PF02596.15 gi|154151799|ref|YP_001405417.1| - 2.7e-50 171.1 0.1 3.8e-50 170.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 FMN_red PF03358.15 gi|154151800|ref|YP_001405418.1| - 2.2e-27 95.7 0.0 2.8e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154151800|ref|YP_001405418.1| - 5.5e-16 58.9 0.0 7.9e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Benyvirus_P25 PF05744.11 gi|154151800|ref|YP_001405418.1| - 0.098 11.9 0.1 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 Benyvirus P25/P26 protein Fer4_4 PF12800.7 gi|154151800|ref|YP_001405418.1| - 6.7 7.5 8.6 4.7 8.0 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain HTH_Tnp_ISL3 PF13542.6 gi|154151801|ref|YP_001405419.1| - 0.0048 16.3 0.0 1.4 8.4 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 HTH_8 PF02954.19 gi|154151801|ref|YP_001405419.1| - 0.016 15.0 3.0 0.38 10.6 0.1 2.6 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family HTH_28 PF13518.6 gi|154151801|ref|YP_001405419.1| - 0.019 15.1 0.0 1.7 8.8 0.0 2.3 1 1 0 2 2 2 0 Helix-turn-helix domain DUF3606 PF12244.8 gi|154151801|ref|YP_001405419.1| - 0.13 12.2 0.5 13 5.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3606) HTH_1 PF00126.27 gi|154151801|ref|YP_001405419.1| - 1.6 8.8 6.6 10 6.1 0.3 2.9 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF3558 PF12079.8 gi|154151801|ref|YP_001405419.1| - 3.7 7.5 9.7 1.9 8.5 7.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3558) Spt5-NGN PF03439.13 gi|154151802|ref|YP_001405420.1| - 1.4e-22 79.4 0.5 2.2e-22 78.7 0.5 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|154151802|ref|YP_001405420.1| - 1.1e-05 25.2 4.7 2.1e-05 24.3 0.2 2.7 2 1 1 3 3 3 1 KOW motif Glyco_hydro_65C PF03633.15 gi|154151802|ref|YP_001405420.1| - 0.078 12.9 0.4 0.16 11.9 0.4 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain SecE PF00584.20 gi|154151803|ref|YP_001405421.1| - 2.8e-07 30.4 0.0 3.5e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex CbtB PF09489.10 gi|154151803|ref|YP_001405421.1| - 0.17 12.0 0.1 0.25 11.5 0.1 1.3 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtB) PLDc_N PF13396.6 gi|154151803|ref|YP_001405421.1| - 1.3 9.0 9.4 2.4 8.1 9.4 1.6 1 1 0 1 1 1 0 Phospholipase_D-nuclease N-terminal Tubulin PF00091.25 gi|154151804|ref|YP_001405422.1| - 1.8e-42 145.8 0.3 3.4e-42 144.9 0.3 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|154151804|ref|YP_001405422.1| - 7.3e-35 119.1 1.6 2.3e-34 117.6 1.6 1.9 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|154151804|ref|YP_001405422.1| - 0.0036 17.2 0.4 0.012 15.6 0.2 1.9 2 0 0 2 2 2 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|154151804|ref|YP_001405422.1| - 0.064 12.4 7.6 0.41 9.8 2.0 2.6 1 1 1 2 2 2 0 Tubulin like Herpes_UL49_2 PF04823.12 gi|154151804|ref|YP_001405422.1| - 0.092 12.9 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Herpesvirus UL49 tegument protein tRNA_deacylase PF04414.12 gi|154151805|ref|YP_001405423.1| - 3.4e-64 216.2 0.0 4.7e-64 215.7 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Response_reg PF00072.24 gi|154151806|ref|YP_001405424.1| - 4.8e-19 68.6 0.1 8.9e-19 67.7 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|154151806|ref|YP_001405424.1| - 2.8e-11 43.4 0.0 2.3e-06 27.6 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|154151806|ref|YP_001405424.1| - 2.4e-08 34.2 0.0 0.0011 19.2 0.0 2.9 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|154151806|ref|YP_001405424.1| - 7e-05 23.0 0.0 0.06 13.6 0.0 3.3 3 1 0 3 3 3 2 PAS domain PAS_8 PF13188.7 gi|154151806|ref|YP_001405424.1| - 0.00079 19.4 0.0 0.19 11.8 0.0 3.2 3 0 0 3 3 3 1 PAS domain Aldedh PF00171.22 gi|154151807|ref|YP_001405425.1| - 0.0017 16.9 0.0 0.0021 16.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family tRNA-synt_1 PF00133.22 gi|154151808|ref|YP_001405426.1| - 3.1e-189 630.1 4.2 4.1e-189 629.7 4.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|154151808|ref|YP_001405426.1| - 2.1e-29 102.5 0.1 4.5e-29 101.4 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|154151808|ref|YP_001405426.1| - 7.7e-29 100.6 1.2 2.2e-10 39.9 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|154151808|ref|YP_001405426.1| - 7.1e-06 25.6 0.0 3.3e-05 23.4 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|154151808|ref|YP_001405426.1| - 0.00036 19.5 0.4 0.0028 16.6 0.0 2.5 4 0 0 4 4 4 1 tRNA synthetases class I (K) Thg1 PF04446.12 gi|154151809|ref|YP_001405427.1| - 6e-26 90.9 0.0 8.6e-26 90.4 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|154151809|ref|YP_001405427.1| - 4.2e-05 23.7 0.0 5.5e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Thg1 C terminal domain PRC PF05239.16 gi|154151810|ref|YP_001405428.1| - 2.4e-12 46.8 1.8 3.3e-12 46.3 1.8 1.2 1 0 0 1 1 1 1 PRC-barrel domain CBS PF00571.28 gi|154151811|ref|YP_001405429.1| - 1.1e-25 89.8 8.3 8e-16 58.2 2.1 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|154151811|ref|YP_001405429.1| - 9.2e-14 51.3 8.1 2.6e-07 30.2 0.6 2.7 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|154151811|ref|YP_001405429.1| - 0.00015 21.5 3.4 0.00015 21.5 3.4 2.1 1 1 0 1 1 1 1 Peptidase M50B-like Radical_SAM PF04055.21 gi|154151812|ref|YP_001405430.1| - 2.6e-15 57.2 0.0 4.8e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|154151812|ref|YP_001405430.1| - 0.00066 19.9 0.0 0.0017 18.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif T2SSK PF03934.13 gi|154151812|ref|YP_001405430.1| - 0.0075 15.7 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein K MAF_flag10 PF01973.18 gi|154151813|ref|YP_001405431.1| - 1.1e-27 96.9 0.0 1.3e-27 96.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|154151813|ref|YP_001405431.1| - 0.18 11.8 0.0 0.32 11.1 0.0 1.3 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain TrkA_N PF02254.18 gi|154151814|ref|YP_001405432.1| - 1.1e-19 70.8 0.1 3e-19 69.4 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.20 gi|154151814|ref|YP_001405432.1| - 1.7e-15 57.1 0.4 6.4e-15 55.2 0.1 2.0 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.19 gi|154151814|ref|YP_001405432.1| - 1.4e-11 45.0 0.7 1.5e-08 35.1 0.0 2.3 2 0 0 2 2 2 2 DHHA1 domain Shikimate_DH PF01488.20 gi|154151814|ref|YP_001405432.1| - 0.00037 20.6 0.0 0.00099 19.2 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|154151814|ref|YP_001405432.1| - 0.0025 17.4 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|154151814|ref|YP_001405432.1| - 0.0046 17.1 0.0 0.01 16.0 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|154151814|ref|YP_001405432.1| - 0.0063 16.9 0.1 0.032 14.7 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding ApbA PF02558.16 gi|154151814|ref|YP_001405432.1| - 0.045 13.4 0.0 0.099 12.3 0.0 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA POTRA_2 PF08479.11 gi|154151814|ref|YP_001405432.1| - 0.11 12.4 0.0 0.54 10.1 0.0 2.1 2 0 0 2 2 2 0 POTRA domain, ShlB-type Rubrerythrin PF02915.17 gi|154151815|ref|YP_001405433.1| - 1.6e-28 99.8 0.3 2.1e-28 99.4 0.3 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|154151815|ref|YP_001405433.1| - 1.6e-06 28.1 0.2 2.9e-06 27.3 0.2 1.4 1 1 0 1 1 1 1 Ferritin-like domain HypA PF01155.19 gi|154151815|ref|YP_001405433.1| - 0.0013 18.7 0.1 0.0026 17.7 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4379 PF14311.6 gi|154151815|ref|YP_001405433.1| - 0.02 15.3 0.4 0.032 14.6 0.4 1.4 1 0 0 1 1 1 0 Probable Zinc-ribbon domain DZR PF12773.7 gi|154151815|ref|YP_001405433.1| - 0.027 14.5 1.0 0.043 13.9 1.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon tRNA-synt_1g PF09334.11 gi|154151815|ref|YP_001405433.1| - 0.032 13.0 0.2 0.053 12.3 0.2 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (M) COQ7 PF03232.13 gi|154151815|ref|YP_001405433.1| - 0.063 13.1 0.2 0.23 11.2 0.1 1.8 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 FA_desaturase_2 PF03405.14 gi|154151815|ref|YP_001405433.1| - 0.065 12.1 0.0 7.6 5.3 0.0 2.0 2 0 0 2 2 2 0 Fatty acid desaturase RNA_POL_M_15KD PF02150.16 gi|154151815|ref|YP_001405433.1| - 0.088 12.7 0.1 0.088 12.7 0.1 1.7 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit ABC_membrane PF00664.23 gi|154151816|ref|YP_001405434.1| - 3.4e-35 122.0 18.1 4.7e-35 121.6 18.1 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|154151816|ref|YP_001405434.1| - 1.9e-28 99.7 0.0 3e-28 99.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TFIID_30kDa PF03540.13 gi|154151816|ref|YP_001405434.1| - 0.00053 19.9 0.1 0.0013 18.7 0.1 1.6 1 0 0 1 1 1 1 Transcription initiation factor TFIID 23-30kDa subunit AAA_23 PF13476.6 gi|154151816|ref|YP_001405434.1| - 0.0012 19.4 0.1 0.0024 18.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|154151816|ref|YP_001405434.1| - 0.0014 18.1 1.2 0.032 13.7 1.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|154151816|ref|YP_001405434.1| - 0.0015 18.4 0.0 0.0033 17.4 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|154151816|ref|YP_001405434.1| - 0.0018 18.0 0.1 0.014 15.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|154151816|ref|YP_001405434.1| - 0.0023 18.2 0.2 0.017 15.4 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|154151816|ref|YP_001405434.1| - 0.0043 16.8 0.0 0.0091 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|154151816|ref|YP_001405434.1| - 0.0045 16.3 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin Rad17 PF03215.15 gi|154151816|ref|YP_001405434.1| - 0.0046 16.9 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain MMR_HSR1 PF01926.23 gi|154151816|ref|YP_001405434.1| - 0.0047 17.0 0.0 0.015 15.4 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|154151816|ref|YP_001405434.1| - 0.014 15.8 0.0 0.032 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|154151816|ref|YP_001405434.1| - 0.02 15.3 0.1 0.33 11.4 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|154151816|ref|YP_001405434.1| - 0.026 14.3 0.0 0.062 13.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|154151816|ref|YP_001405434.1| - 0.033 14.0 0.1 0.26 11.1 0.0 2.1 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 gi|154151816|ref|YP_001405434.1| - 0.039 14.1 0.2 0.14 12.3 0.2 2.0 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|154151816|ref|YP_001405434.1| - 0.06 13.0 0.1 0.18 11.4 0.1 1.7 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|154151816|ref|YP_001405434.1| - 0.19 11.6 0.8 0.39 10.6 0.1 1.9 3 0 0 3 3 2 0 NTPase SbcCD_C PF13558.6 gi|154151816|ref|YP_001405434.1| - 0.65 10.3 2.3 1.5 9.1 0.1 2.7 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.27 gi|154151817|ref|YP_001405435.1| - 1.9e-31 109.4 0.0 3.1e-31 108.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|154151817|ref|YP_001405435.1| - 3.7e-31 108.8 15.2 4.7e-31 108.4 15.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_ATPase PF09818.9 gi|154151817|ref|YP_001405435.1| - 0.01 14.7 0.1 0.01 14.7 0.1 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF87 PF01935.17 gi|154151817|ref|YP_001405435.1| - 0.029 14.4 0.3 0.055 13.6 0.3 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 gi|154151817|ref|YP_001405435.1| - 0.03 14.0 0.2 0.069 12.9 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|154151817|ref|YP_001405435.1| - 0.034 14.5 0.0 0.065 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|154151817|ref|YP_001405435.1| - 0.037 13.4 0.0 2.3 7.6 0.0 2.0 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|154151817|ref|YP_001405435.1| - 0.038 13.3 0.1 0.1 11.9 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin ABC_membrane_3 PF13748.6 gi|154151817|ref|YP_001405435.1| - 0.56 9.4 14.4 1.9 7.7 12.0 2.5 1 1 1 2 2 2 0 ABC transporter transmembrane region FMN_red PF03358.15 gi|154151818|ref|YP_001405436.1| - 6.6e-37 126.6 0.0 9.5e-37 126.1 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|154151818|ref|YP_001405436.1| - 9.5e-16 58.1 0.0 1.4e-15 57.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|154151818|ref|YP_001405436.1| - 0.089 13.0 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain Methyltransf_11 PF08241.12 gi|154151819|ref|YP_001405437.1| - 1.6e-14 54.3 0.0 2.3e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154151819|ref|YP_001405437.1| - 2.4e-14 53.8 0.0 3.7e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154151819|ref|YP_001405437.1| - 1e-12 48.6 0.0 1.5e-12 48.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154151819|ref|YP_001405437.1| - 5.2e-11 42.7 0.0 6.9e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154151819|ref|YP_001405437.1| - 3.1e-09 36.8 0.0 5.7e-09 35.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|154151819|ref|YP_001405437.1| - 7.6e-05 22.2 0.0 0.00011 21.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|154151819|ref|YP_001405437.1| - 0.0015 17.9 0.0 0.0021 17.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|154151819|ref|YP_001405437.1| - 0.0053 16.3 0.0 0.008 15.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|154151819|ref|YP_001405437.1| - 0.083 12.2 0.0 0.17 11.1 0.0 1.4 1 1 0 1 1 1 0 O-methyltransferase domain Transglut_core PF01841.19 gi|154151820|ref|YP_001405438.1| - 1.5e-16 60.8 0.2 2.1e-16 60.4 0.2 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily Peptidase_S48 PF03574.15 gi|154151820|ref|YP_001405438.1| - 0.13 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S48 CAP PF00188.26 gi|154151821|ref|YP_001405439.1| - 6.4e-17 62.6 1.6 2.3e-16 60.8 1.6 1.9 1 1 0 1 1 1 1 Cysteine-rich secretory protein family zf-AN1 PF01428.16 gi|154151821|ref|YP_001405439.1| - 3.5e-12 46.3 9.0 6.6e-12 45.4 9.0 1.4 1 0 0 1 1 1 1 AN1-like Zinc finger FYVE PF01363.21 gi|154151821|ref|YP_001405439.1| - 0.0057 16.8 0.5 0.0085 16.2 0.5 1.3 1 0 0 1 1 1 1 FYVE zinc finger Anoctamin PF04547.12 gi|154151821|ref|YP_001405439.1| - 0.023 13.5 0.0 0.032 13.1 0.0 1.1 1 0 0 1 1 1 0 Calcium-activated chloride channel Shisa PF13908.6 gi|154151821|ref|YP_001405439.1| - 0.12 12.7 0.1 0.12 12.7 0.1 1.5 2 0 0 2 2 2 0 Wnt and FGF inhibitory regulator C5HCH PF17982.1 gi|154151821|ref|YP_001405439.1| - 0.16 12.2 5.5 0.31 11.2 5.5 1.4 1 0 0 1 1 1 0 NSD Cys-His rich domain Arc_trans_TRASH PF08394.10 gi|154151821|ref|YP_001405439.1| - 0.83 10.0 5.0 8.8 6.8 0.6 2.4 2 0 0 2 2 2 0 Archaeal TRASH domain Nitroreductase PF00881.24 gi|154151822|ref|YP_001405440.1| - 1e-29 103.8 0.0 1.6e-29 103.2 0.0 1.3 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|154151822|ref|YP_001405440.1| - 4.4e-08 32.9 0.0 2e-06 27.5 0.0 2.3 2 0 0 2 2 2 2 Putative TM nitroreductase PemK_toxin PF02452.17 gi|154151823|ref|YP_001405441.1| - 8e-08 32.7 0.0 1e-07 32.3 0.0 1.1 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system ABC_tran PF00005.27 gi|154151824|ref|YP_001405442.1| - 6.4e-26 91.5 0.0 8.9e-26 91.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|154151824|ref|YP_001405442.1| - 4.1e-10 40.0 0.0 0.00073 19.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|154151824|ref|YP_001405442.1| - 6.2e-07 30.1 0.0 8.2e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF4162 PF13732.6 gi|154151824|ref|YP_001405442.1| - 0.0012 19.5 0.0 0.0026 18.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|154151824|ref|YP_001405442.1| - 0.0033 16.9 0.1 1.4 8.3 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|154151824|ref|YP_001405442.1| - 0.0044 15.7 0.0 2.3 6.8 0.1 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|154151824|ref|YP_001405442.1| - 0.0069 16.1 0.4 0.013 15.2 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|154151824|ref|YP_001405442.1| - 0.059 13.0 0.2 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|154151824|ref|YP_001405442.1| - 0.098 12.2 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.8 gi|154151824|ref|YP_001405442.1| - 0.41 8.1 0.3 0.58 7.6 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC2_membrane_3 PF12698.7 gi|154151825|ref|YP_001405443.1| - 2.2e-11 43.5 15.8 2.2e-11 43.5 15.8 2.5 2 0 0 2 2 2 1 ABC-2 family transporter protein EAV_GS PF01309.18 gi|154151825|ref|YP_001405443.1| - 1.3 8.6 6.1 0.11 12.1 0.6 2.0 2 0 0 2 2 2 0 Equine arteritis virus small envelope glycoprotein ABC2_membrane_3 PF12698.7 gi|154151826|ref|YP_001405444.1| - 1.8e-13 50.4 3.0 2.3e-13 50.0 3.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|154151826|ref|YP_001405444.1| - 3.6e-12 46.2 0.7 3.6e-12 46.2 0.7 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|154151826|ref|YP_001405444.1| - 0.0013 18.7 10.4 0.0013 18.7 10.4 2.5 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|154151826|ref|YP_001405444.1| - 0.33 10.5 17.1 0.071 12.6 12.0 1.9 2 0 0 2 2 2 0 ABC-2 family transporter protein RDD PF06271.12 gi|154151828|ref|YP_001405446.1| - 5e-28 98.1 7.4 6.1e-28 97.8 7.4 1.1 1 0 0 1 1 1 1 RDD family DZR PF12773.7 gi|154151828|ref|YP_001405446.1| - 2.4e-05 24.3 1.5 3.4e-05 23.8 1.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|154151828|ref|YP_001405446.1| - 5.2e-05 22.8 2.8 8.4e-05 22.2 2.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|154151828|ref|YP_001405446.1| - 0.00033 19.9 2.9 0.0005 19.4 2.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|154151828|ref|YP_001405446.1| - 0.0039 17.1 1.6 1.4 8.9 0.1 2.2 2 0 0 2 2 2 2 Nudix N-terminal DUF3671 PF12420.8 gi|154151828|ref|YP_001405446.1| - 0.019 15.1 0.3 0.056 13.5 0.3 1.7 1 1 0 1 1 1 0 Protein of unknown function DUF3592 PF12158.8 gi|154151828|ref|YP_001405446.1| - 0.057 13.5 1.5 0.17 11.9 0.3 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3592) zinc_ribbon_15 PF17032.5 gi|154151828|ref|YP_001405446.1| - 0.39 11.5 2.6 0.6 10.9 2.6 1.3 1 0 0 1 1 1 0 zinc-ribbon family zf-NADH-PPase PF09297.11 gi|154151828|ref|YP_001405446.1| - 1.1 9.0 4.5 0.84 9.3 0.5 2.2 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF202 PF02656.15 gi|154151828|ref|YP_001405446.1| - 5.4 7.5 8.8 3.5 8.1 2.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF202) NOB1_Zn_bind PF08772.11 gi|154151828|ref|YP_001405446.1| - 9.3 6.5 7.0 6.9 6.9 1.0 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like PQ-loop PF04193.14 gi|154151829|ref|YP_001405447.1| - 4.7e-12 45.5 0.7 4.7e-12 45.5 0.7 1.5 2 0 0 2 2 2 1 PQ loop repeat MtN3_slv PF03083.16 gi|154151829|ref|YP_001405447.1| - 9.5e-05 22.4 2.6 0.00089 19.3 3.1 1.9 1 1 1 2 2 2 1 Sugar efflux transporter for intercellular exchange DUF1129 PF06570.11 gi|154151829|ref|YP_001405447.1| - 0.019 14.4 0.9 0.021 14.3 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Phtf-FEM1B_bdg PF12129.8 gi|154151829|ref|YP_001405447.1| - 0.059 13.2 0.5 0.07 12.9 0.5 1.1 1 0 0 1 1 1 0 Male germ-cell putative homeodomain transcription factor Methyltransf_31 PF13847.6 gi|154151830|ref|YP_001405448.1| - 1.9e-22 79.7 0.0 3.2e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154151830|ref|YP_001405448.1| - 7e-20 71.5 0.0 2.9e-18 66.3 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|154151830|ref|YP_001405448.1| - 2.2e-19 69.9 0.0 2.2e-18 66.8 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154151830|ref|YP_001405448.1| - 8.3e-16 58.5 0.0 4.8e-15 56.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|154151830|ref|YP_001405448.1| - 1.2e-14 54.2 0.0 2.5e-14 53.2 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|154151830|ref|YP_001405448.1| - 1.5e-12 47.6 0.0 3.6e-12 46.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|154151830|ref|YP_001405448.1| - 1.7e-07 30.9 0.0 2.7e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|154151830|ref|YP_001405448.1| - 1.9e-06 27.8 0.0 2.6e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|154151830|ref|YP_001405448.1| - 4e-06 26.5 0.0 6.5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|154151830|ref|YP_001405448.1| - 2.2e-05 23.9 0.0 2.9e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain NodS PF05401.11 gi|154151830|ref|YP_001405448.1| - 0.00048 19.8 0.0 0.00074 19.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) DUF4774 PF15999.5 gi|154151830|ref|YP_001405448.1| - 0.0011 18.7 0.5 0.0043 16.8 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4774) CMAS PF02353.20 gi|154151830|ref|YP_001405448.1| - 0.0027 17.0 0.0 0.0035 16.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.11 gi|154151830|ref|YP_001405448.1| - 0.0099 15.6 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_18 PF12847.7 gi|154151830|ref|YP_001405448.1| - 0.065 13.2 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|154151830|ref|YP_001405448.1| - 0.078 12.4 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB GCD14 PF08704.10 gi|154151830|ref|YP_001405448.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.20 gi|154151830|ref|YP_001405448.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase YdjM PF04307.14 gi|154151831|ref|YP_001405449.1| - 1.3e-12 47.4 19.5 2.1e-12 46.7 19.5 1.4 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Herpes_UL73 PF03554.13 gi|154151831|ref|YP_001405449.1| - 7 6.7 6.4 14 5.8 6.4 1.4 1 0 0 1 1 1 0 UL73 viral envelope glycoprotein GTP_EFTU PF00009.27 gi|154151833|ref|YP_001405451.1| - 3.9e-32 111.4 0.1 1.3e-31 109.7 0.0 1.8 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|154151833|ref|YP_001405451.1| - 1.4e-30 105.0 0.9 7.7e-30 102.6 0.2 2.7 3 0 0 3 3 3 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|154151833|ref|YP_001405451.1| - 6.1e-17 61.7 0.1 1.9e-16 60.1 0.1 1.8 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|154151833|ref|YP_001405451.1| - 2.7e-11 43.7 4.1 1.1e-08 35.3 0.1 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|154151833|ref|YP_001405451.1| - 3.5e-08 33.5 0.0 1e-07 32.0 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|154151833|ref|YP_001405451.1| - 0.0037 17.3 0.1 0.085 12.9 0.0 2.5 1 1 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.17 gi|154151833|ref|YP_001405451.1| - 0.011 15.6 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|154151833|ref|YP_001405451.1| - 0.028 14.6 0.0 0.051 13.8 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|154151833|ref|YP_001405451.1| - 0.041 13.6 0.0 2.3 8.0 0.0 3.1 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Ras PF00071.22 gi|154151833|ref|YP_001405451.1| - 0.13 11.9 0.0 0.31 10.6 0.0 1.7 1 1 0 1 1 1 0 Ras family Ribosomal_S6e PF01092.19 gi|154151834|ref|YP_001405452.1| - 7.5e-37 126.1 0.0 9.6e-37 125.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e Cyclase_polyket PF04673.12 gi|154151834|ref|YP_001405452.1| - 0.00096 19.4 0.0 0.0014 18.8 0.0 1.2 1 0 0 1 1 1 1 Polyketide synthesis cyclase PYNP_C PF07831.13 gi|154151834|ref|YP_001405452.1| - 0.11 12.2 0.4 0.11 12.2 0.4 1.8 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain Ribosomal_S6e PF01092.19 gi|154151835|ref|YP_001405453.1| - 4.5e-07 29.9 0.3 1.8e-06 27.9 0.0 1.8 1 1 1 2 2 2 1 Ribosomal protein S6e MIT PF04212.18 gi|154151835|ref|YP_001405453.1| - 0.083 13.0 0.2 0.083 13.0 0.2 1.5 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain TrfA PF07042.11 gi|154151836|ref|YP_001405454.1| - 0.032 13.3 0.0 0.041 12.9 0.0 1.1 1 0 0 1 1 1 0 TrfA protein ASCH PF04266.14 gi|154151836|ref|YP_001405454.1| - 0.033 14.8 0.0 0.036 14.6 0.0 1.2 1 0 0 1 1 1 0 ASCH domain DUF3850 PF12961.7 gi|154151836|ref|YP_001405454.1| - 0.055 13.5 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3850) PIN_12 PF16289.5 gi|154151837|ref|YP_001405455.1| - 0.0019 18.7 3.3 0.0024 18.4 0.7 2.4 1 1 1 2 2 2 1 PIN domain PIN_3 PF13470.6 gi|154151837|ref|YP_001405455.1| - 0.018 15.8 0.1 0.033 14.9 0.1 1.5 1 0 0 1 1 1 0 PIN domain Paz_1 PF18349.1 gi|154151837|ref|YP_001405455.1| - 0.023 14.6 0.1 12 6.0 0.0 3.5 3 1 1 4 4 4 0 PAZ domain EVE PF01878.18 gi|154151837|ref|YP_001405455.1| - 0.055 13.5 0.2 0.26 11.3 0.1 2.3 2 1 0 2 2 2 0 EVE domain ASCH PF04266.14 gi|154151838|ref|YP_001405456.1| - 6.6e-06 26.7 0.0 7.7e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 ASCH domain DUF3850 PF12961.7 gi|154151838|ref|YP_001405456.1| - 0.029 14.4 0.0 0.052 13.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3850) Acetyltransf_1 PF00583.25 gi|154151839|ref|YP_001405457.1| - 1.6e-05 25.1 0.0 3.7e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|154151839|ref|YP_001405457.1| - 0.0044 17.0 0.0 0.0084 16.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|154151839|ref|YP_001405457.1| - 0.028 14.5 0.1 0.06 13.5 0.1 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PCP_red PF08369.10 gi|154151839|ref|YP_001405457.1| - 0.091 13.0 0.0 0.24 11.6 0.0 1.7 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit HNH_5 PF14279.6 gi|154151840|ref|YP_001405458.1| - 9.7e-10 38.2 1.5 2.3e-09 37.0 1.5 1.6 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.23 gi|154151840|ref|YP_001405458.1| - 6.6e-06 26.2 0.4 6.6e-06 26.2 0.4 1.9 2 0 0 2 2 2 1 HNH endonuclease HNH_4 PF13395.6 gi|154151840|ref|YP_001405458.1| - 0.0058 16.5 0.0 0.02 14.8 0.0 1.8 1 1 0 1 1 1 1 HNH endonuclease PIN PF01850.21 gi|154151841|ref|YP_001405459.1| - 2.7e-05 24.7 0.5 0.00017 22.1 0.1 2.4 2 1 0 2 2 2 1 PIN domain PIN_3 PF13470.6 gi|154151841|ref|YP_001405459.1| - 0.041 14.6 0.5 2.8 8.7 0.5 2.5 1 1 0 1 1 1 0 PIN domain STAS PF01740.21 gi|154151842|ref|YP_001405460.1| - 1e-10 41.2 0.0 1.2e-10 41.1 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 gi|154151842|ref|YP_001405460.1| - 3.4e-09 36.9 0.0 4.2e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 STAS domain DUF4251 PF14059.6 gi|154151843|ref|YP_001405461.1| - 0.0017 18.3 1.0 0.0022 17.9 1.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4251) DUF2240 PF09999.9 gi|154151844|ref|YP_001405462.1| - 1.9e-49 167.0 0.0 2.2e-49 166.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF4777 PF16007.5 gi|154151844|ref|YP_001405462.1| - 0.0015 18.7 0.1 0.11 12.8 0.0 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4777) Swi5 PF07061.11 gi|154151844|ref|YP_001405462.1| - 0.047 13.8 0.0 0.089 12.9 0.0 1.4 1 0 0 1 1 1 0 Swi5 A_deaminase PF00962.22 gi|154151844|ref|YP_001405462.1| - 0.22 10.8 0.0 0.25 10.6 0.0 1.1 1 0 0 1 1 1 0 Adenosine/AMP deaminase Ribosomal_S8e PF01201.22 gi|154151846|ref|YP_001405464.1| - 2.8e-36 124.7 1.1 3.1e-36 124.6 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e cobW PF02492.19 gi|154151847|ref|YP_001405465.1| - 3.4e-22 78.9 0.0 4.5e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|154151847|ref|YP_001405465.1| - 6.4e-06 25.3 0.1 0.073 12.0 0.0 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|154151847|ref|YP_001405465.1| - 1.3e-05 25.1 0.0 2.8e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.22 gi|154151847|ref|YP_001405465.1| - 0.0029 17.2 0.0 0.0051 16.5 0.0 1.6 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain PduV-EutP PF10662.9 gi|154151847|ref|YP_001405465.1| - 0.025 14.3 0.0 6.8 6.4 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|154151847|ref|YP_001405465.1| - 0.029 13.9 0.1 5 6.6 0.0 2.4 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain TrwB_AAD_bind PF10412.9 gi|154151847|ref|YP_001405465.1| - 0.067 12.1 0.0 0.097 11.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NACHT PF05729.12 gi|154151847|ref|YP_001405465.1| - 0.074 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|154151847|ref|YP_001405465.1| - 0.11 12.3 0.0 6.2 6.7 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase NTPase_1 PF03266.15 gi|154151847|ref|YP_001405465.1| - 0.14 12.1 0.0 0.32 10.9 0.0 1.6 2 0 0 2 2 2 0 NTPase AAA_16 PF13191.6 gi|154151847|ref|YP_001405465.1| - 0.16 12.3 0.0 0.23 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain LpxK PF02606.14 gi|154151847|ref|YP_001405465.1| - 0.16 11.0 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase SRP19 PF01922.17 gi|154151848|ref|YP_001405466.1| - 4e-18 66.1 0.1 5.4e-18 65.7 0.1 1.2 1 0 0 1 1 1 1 SRP19 protein PHP PF02811.19 gi|154151849|ref|YP_001405467.1| - 4.6e-07 30.3 0.0 7e-07 29.7 0.0 1.3 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|154151849|ref|YP_001405467.1| - 1.2e-06 28.2 0.0 3.3e-06 26.7 0.0 1.7 2 0 0 2 2 2 1 RNase P subunit p30 PGA_cap PF09587.10 gi|154151849|ref|YP_001405467.1| - 0.034 13.6 0.3 0.062 12.7 0.1 1.5 2 0 0 2 2 2 0 Bacterial capsule synthesis protein PGA_cap TFIIB PF00382.19 gi|154151850|ref|YP_001405468.1| - 6.7e-43 144.6 1.0 4.1e-21 74.8 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|154151850|ref|YP_001405468.1| - 1.3e-18 66.2 0.6 1.3e-18 66.2 0.6 1.7 2 0 0 2 2 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|154151850|ref|YP_001405468.1| - 1.6e-05 24.3 1.7 0.0033 16.9 0.3 3.3 2 1 0 2 2 2 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.11 gi|154151850|ref|YP_001405468.1| - 0.0006 19.7 0.5 0.0013 18.6 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_AsnC-type PF13404.6 gi|154151850|ref|YP_001405468.1| - 0.0053 16.6 1.7 0.029 14.2 0.3 2.9 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain Lar_restr_allev PF14354.6 gi|154151850|ref|YP_001405468.1| - 0.0096 16.3 0.5 0.1 13.0 0.2 2.4 2 0 0 2 2 2 1 Restriction alleviation protein Lar Ribosomal_S27e PF01667.17 gi|154151850|ref|YP_001405468.1| - 0.026 14.2 0.4 0.026 14.2 0.4 1.8 2 0 0 2 2 2 0 Ribosomal protein S27 RPA_interact_C PF14768.6 gi|154151850|ref|YP_001405468.1| - 0.032 14.8 0.1 2.2 8.9 0.0 2.4 2 0 0 2 2 2 0 Replication protein A interacting C-terminal Stc1 PF12898.7 gi|154151850|ref|YP_001405468.1| - 0.035 14.7 0.7 0.47 11.0 0.6 2.3 2 0 0 2 2 2 0 Stc1 domain HTH_31 PF13560.6 gi|154151850|ref|YP_001405468.1| - 0.035 14.4 4.8 5 7.5 0.1 3.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|154151850|ref|YP_001405468.1| - 0.04 14.0 0.4 2 8.5 0.0 3.5 3 1 1 4 4 4 0 Helix-turn-helix UPF0253 PF06786.12 gi|154151850|ref|YP_001405468.1| - 0.041 14.1 0.2 0.45 10.8 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Cyclin_C PF02984.19 gi|154151850|ref|YP_001405468.1| - 0.046 13.8 0.0 12 6.0 0.0 2.4 2 0 0 2 2 2 0 Cyclin, C-terminal domain A2L_zn_ribbon PF08792.10 gi|154151850|ref|YP_001405468.1| - 0.053 13.3 1.5 0.32 10.8 1.7 2.0 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|154151850|ref|YP_001405468.1| - 0.073 12.5 0.7 3 7.4 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Sigma70_r4_2 PF08281.12 gi|154151850|ref|YP_001405468.1| - 0.093 12.4 0.7 0.73 9.5 0.1 2.7 2 2 0 2 2 2 0 Sigma-70, region 4 DUF2318 PF10080.9 gi|154151850|ref|YP_001405468.1| - 0.13 12.4 0.4 0.46 10.6 0.1 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) DZR PF12773.7 gi|154151850|ref|YP_001405468.1| - 0.14 12.2 1.4 0.64 10.1 0.5 2.2 2 0 0 2 2 2 0 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|154151850|ref|YP_001405468.1| - 0.74 10.0 3.1 4.8 7.4 1.4 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) SR1P PF13790.6 gi|154151850|ref|YP_001405468.1| - 0.84 9.8 4.3 5.9 7.1 0.2 2.6 3 0 0 3 3 2 0 SR1 protein Zn-ribbon_8 PF09723.10 gi|154151850|ref|YP_001405468.1| - 0.88 9.7 7.1 0.68 10.1 0.6 2.9 2 1 2 4 4 4 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|154151850|ref|YP_001405468.1| - 1.7 8.6 6.7 0.79 9.7 2.2 2.7 2 1 1 3 3 3 0 Nudix N-terminal zf-Mss51 PF13824.6 gi|154151850|ref|YP_001405468.1| - 2.2 8.4 4.0 19 5.4 0.6 3.2 3 1 1 4 4 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.7 gi|154151850|ref|YP_001405468.1| - 2.7 8.0 5.7 0.27 11.2 0.8 1.9 2 0 0 2 2 1 0 Transposase zinc-ribbon domain TrmB PF01978.19 gi|154151851|ref|YP_001405469.1| - 5.3e-16 58.3 0.0 1.8e-15 56.6 0.0 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|154151851|ref|YP_001405469.1| - 0.021 14.4 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|154151851|ref|YP_001405469.1| - 0.027 14.1 0.0 0.062 13.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF3731 PF12531.8 gi|154151851|ref|YP_001405469.1| - 0.16 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 DNA-K related protein SnoaL PF07366.12 gi|154151852|ref|YP_001405470.1| - 4.8e-33 113.6 0.1 5.5e-33 113.5 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|154151852|ref|YP_001405470.1| - 1.4e-11 45.0 0.3 1.6e-11 44.7 0.3 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|154151852|ref|YP_001405470.1| - 0.0056 17.1 0.2 0.0081 16.6 0.2 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) zf-CDGSH PF09360.10 gi|154151853|ref|YP_001405471.1| - 1.2e-39 134.2 5.6 2.6e-19 69.2 0.3 2.5 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.11 gi|154151853|ref|YP_001405471.1| - 1.4e-10 41.1 0.0 3.4e-10 39.9 0.0 1.7 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Rieske PF00355.26 gi|154151854|ref|YP_001405472.1| - 4.4e-16 58.6 0.0 6.5e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|154151854|ref|YP_001405472.1| - 2.1e-11 43.7 0.0 2.8e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain PEGA PF08308.11 gi|154151856|ref|YP_001405474.1| - 1.8e-17 63.0 0.5 3.9e-17 61.9 0.5 1.6 1 0 0 1 1 1 1 PEGA domain DUF726 PF05277.12 gi|154151856|ref|YP_001405474.1| - 0.12 11.3 5.4 0.25 10.2 5.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF726) DUF2281 PF10047.9 gi|154151857|ref|YP_001405475.1| - 0.019 15.7 0.2 0.052 14.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2281) CBP_BcsO PF17037.5 gi|154151857|ref|YP_001405475.1| - 0.73 10.0 12.1 0.14 12.3 9.0 1.4 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsO AIRS PF00586.24 gi|154151858|ref|YP_001405476.1| - 2.1e-20 73.2 1.8 4e-20 72.3 1.8 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF460 PF04312.13 gi|154151859|ref|YP_001405477.1| - 2.2e-47 160.3 0.0 4.1e-47 159.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|154151859|ref|YP_001405477.1| - 0.0019 18.5 0.9 0.0019 18.5 0.9 2.4 2 1 1 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor DUF641 PF04859.12 gi|154151859|ref|YP_001405477.1| - 0.0051 17.2 3.1 0.093 13.1 0.2 2.5 1 1 1 2 2 2 1 Plant protein of unknown function (DUF641) Lebercilin PF15619.6 gi|154151859|ref|YP_001405477.1| - 0.0078 15.9 5.4 0.014 15.1 5.4 1.4 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease PSK_trans_fac PF07704.11 gi|154151859|ref|YP_001405477.1| - 0.027 15.2 3.3 0.15 12.8 3.3 2.3 1 0 0 1 1 1 0 Rv0623-like transcription factor TMF_TATA_bd PF12325.8 gi|154151859|ref|YP_001405477.1| - 0.45 10.7 3.2 1.4 9.1 3.2 1.8 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding RIO1 PF01163.22 gi|154151860|ref|YP_001405478.1| - 6.7e-40 136.7 0.0 9.7e-40 136.2 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|154151860|ref|YP_001405478.1| - 3.6e-24 84.8 0.2 6.9e-24 83.9 0.0 1.6 2 0 0 2 2 2 1 Rio2, N-terminal APH PF01636.23 gi|154151860|ref|YP_001405478.1| - 1.7e-05 24.8 0.0 3e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family PCI PF01399.27 gi|154151860|ref|YP_001405478.1| - 0.0013 19.2 0.0 0.0029 18.1 0.0 1.6 1 0 0 1 1 1 1 PCI domain HTH_IclR PF09339.10 gi|154151860|ref|YP_001405478.1| - 0.0093 15.8 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|154151860|ref|YP_001405478.1| - 0.032 14.1 0.0 0.086 12.7 0.0 1.7 1 0 0 1 1 1 0 MarR family Pkinase PF00069.25 gi|154151860|ref|YP_001405478.1| - 0.035 13.5 0.0 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 Protein kinase domain HTH_9 PF08221.11 gi|154151860|ref|YP_001405478.1| - 0.036 14.2 0.0 0.08 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_24 PF13412.6 gi|154151860|ref|YP_001405478.1| - 0.067 12.8 0.2 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding ATP_bind_3 PF01171.20 gi|154151861|ref|YP_001405479.1| - 6e-07 29.4 0.0 9e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 PP-loop family LysM PF01476.20 gi|154151861|ref|YP_001405479.1| - 0.017 15.2 0.0 40 4.4 0.0 3.8 4 0 0 4 4 4 0 LysM domain TrkA_N PF02254.18 gi|154151862|ref|YP_001405480.1| - 5.7e-38 129.8 4.1 4.3e-22 78.6 1.0 2.8 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|154151862|ref|YP_001405480.1| - 4.4e-11 42.5 0.1 7.5e-05 22.5 0.0 2.7 2 0 0 2 2 2 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|154151862|ref|YP_001405480.1| - 1.4e-07 31.9 0.6 0.027 14.9 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding EAV_GS PF01309.18 gi|154151862|ref|YP_001405480.1| - 0.007 16.0 0.3 0.013 15.2 0.3 1.3 1 0 0 1 1 1 1 Equine arteritis virus small envelope glycoprotein Shikimate_DH PF01488.20 gi|154151862|ref|YP_001405480.1| - 0.013 15.6 0.0 0.13 12.4 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase LpxI_N PF17930.1 gi|154151862|ref|YP_001405480.1| - 0.071 13.0 0.1 14 5.6 0.0 2.7 2 0 0 2 2 2 0 LpxI N-terminal domain Ion_trans_2 PF07885.16 gi|154151862|ref|YP_001405480.1| - 0.095 12.7 9.0 0.24 11.4 9.0 1.6 1 0 0 1 1 1 0 Ion channel DUF5603 PF18231.1 gi|154151862|ref|YP_001405480.1| - 0.13 12.6 0.1 1.6 9.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5603) Ion_trans PF00520.31 gi|154151862|ref|YP_001405480.1| - 9.6 5.3 11.2 18 4.4 11.2 1.4 1 1 0 1 1 1 0 Ion transport protein NAD_synthase PF02540.17 gi|154151863|ref|YP_001405481.1| - 7.6e-70 234.8 0.0 9.8e-70 234.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|154151863|ref|YP_001405481.1| - 0.0001 21.2 0.1 0.0012 17.7 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|154151863|ref|YP_001405481.1| - 0.0027 17.5 0.0 0.0027 17.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|154151863|ref|YP_001405481.1| - 0.019 14.4 0.0 0.21 11.1 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC GPI PF06560.11 gi|154151864|ref|YP_001405482.1| - 1.1e-34 119.2 0.0 1.4e-34 118.9 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Bac_rhamnosid_C PF17390.2 gi|154151864|ref|YP_001405482.1| - 0.0068 16.2 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase C-terminal domain NPCBM_assoc PF10633.9 gi|154151865|ref|YP_001405483.1| - 9.9e-06 25.7 18.1 0.0019 18.4 1.3 5.4 6 1 0 6 6 6 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|154151865|ref|YP_001405483.1| - 2.9e-05 24.2 14.6 0.12 12.6 0.9 4.0 3 1 0 3 3 3 3 CARDB Cleaved_Adhesin PF07675.11 gi|154151865|ref|YP_001405483.1| - 0.073 13.0 1.0 0.13 12.1 1.0 1.4 1 0 0 1 1 1 0 Cleaved Adhesin Domain DUF11 PF01345.18 gi|154151865|ref|YP_001405483.1| - 1.1 9.7 26.1 2.2 8.7 1.8 4.8 3 2 0 3 3 3 0 Domain of unknown function DUF11 NRD1_2 PF01995.16 gi|154151866|ref|YP_001405484.1| - 3e-86 288.6 0.1 3.3e-86 288.4 0.1 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 Pyr_redox_2 PF07992.14 gi|154151868|ref|YP_001405486.1| - 1.2e-49 169.1 1.4 1.6e-49 168.8 1.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|154151868|ref|YP_001405486.1| - 2.5e-14 53.6 2.5 1e-09 38.8 0.4 3.5 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|154151868|ref|YP_001405486.1| - 5.6e-14 52.1 0.1 8.6e-12 44.9 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|154151868|ref|YP_001405486.1| - 8.5e-08 32.0 0.3 1.4e-07 31.2 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|154151868|ref|YP_001405486.1| - 3.8e-06 26.3 9.2 0.002 17.3 1.0 3.1 2 1 1 3 3 3 3 FAD binding domain Pyr_redox_dim PF02852.22 gi|154151868|ref|YP_001405486.1| - 7.1e-06 26.2 0.0 2.9e-05 24.3 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.22 gi|154151868|ref|YP_001405486.1| - 1.9e-05 23.9 0.9 0.0024 17.0 1.3 2.7 2 1 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|154151868|ref|YP_001405486.1| - 0.00014 20.7 3.0 0.00095 18.0 0.7 2.7 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_7 PF13241.6 gi|154151868|ref|YP_001405486.1| - 0.00015 22.1 0.2 0.36 11.3 0.0 2.3 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|154151868|ref|YP_001405486.1| - 0.0009 19.4 3.1 0.0088 16.3 0.2 3.4 4 0 0 4 4 4 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|154151868|ref|YP_001405486.1| - 0.0025 17.1 1.4 0.032 13.5 0.6 2.3 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 gi|154151868|ref|YP_001405486.1| - 0.025 14.4 3.6 0.29 11.0 0.3 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|154151868|ref|YP_001405486.1| - 0.052 12.7 0.0 1 8.4 0.0 2.1 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|154151868|ref|YP_001405486.1| - 0.091 11.6 0.9 0.21 10.4 0.4 1.8 2 0 0 2 2 2 0 Tryptophan halogenase ApbA PF02558.16 gi|154151868|ref|YP_001405486.1| - 0.18 11.4 0.4 1.9 8.1 0.1 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA HEPN_Apea PF18739.1 gi|154151869|ref|YP_001405487.1| - 3.6e-08 33.7 1.0 8.6e-08 32.6 1.0 1.7 1 0 0 1 1 1 1 Apea-like HEPN tRNA-synt_2 PF00152.20 gi|154151870|ref|YP_001405488.1| - 1.4e-86 290.5 2.2 1.8e-86 290.1 2.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|154151870|ref|YP_001405488.1| - 2.6e-14 52.9 0.4 5.2e-14 52.0 0.4 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|154151870|ref|YP_001405488.1| - 2.9e-07 30.2 1.8 0.0002 21.0 0.3 2.5 2 1 0 2 2 2 2 tRNA synthetases class II core domain (F) TfoX_N PF04993.13 gi|154151871|ref|YP_001405489.1| - 2.7e-06 27.5 0.0 3.3e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 TfoX N-terminal domain YjbR PF04237.13 gi|154151871|ref|YP_001405489.1| - 3.4e-06 27.5 0.0 4.5e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 YjbR KTSC PF13619.6 gi|154151873|ref|YP_001405491.1| - 0.059 13.2 0.0 0.073 12.9 0.0 1.2 1 0 0 1 1 1 0 KTSC domain Flavodoxin_3 PF12641.7 gi|154151874|ref|YP_001405492.1| - 2.4e-06 27.3 0.0 2.8e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|154151874|ref|YP_001405492.1| - 0.00096 19.4 0.0 0.0013 19.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.7 gi|154151874|ref|YP_001405492.1| - 0.088 12.5 0.0 0.28 10.9 0.0 1.7 1 1 0 1 1 1 0 Flavodoxin MctB PF11382.8 gi|154151874|ref|YP_001405492.1| - 0.11 12.2 0.2 0.34 10.6 0.0 1.7 1 1 1 2 2 2 0 Copper transport outer membrane protein, MctB Flavodoxin_1 PF00258.25 gi|154151874|ref|YP_001405492.1| - 0.18 12.0 0.2 0.76 10.0 0.2 1.9 1 1 0 1 1 1 0 Flavodoxin Response_reg PF00072.24 gi|154151875|ref|YP_001405493.1| - 2.9e-21 75.7 0.2 5.7e-21 74.8 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Hemerythrin PF01814.23 gi|154151875|ref|YP_001405493.1| - 0.0006 20.4 1.1 0.0022 18.6 0.5 2.1 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain EzrA PF06160.12 gi|154151875|ref|YP_001405493.1| - 0.00064 18.0 5.2 0.00064 18.0 5.2 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA IFT20 PF14931.6 gi|154151875|ref|YP_001405493.1| - 0.0038 17.4 0.9 0.0038 17.4 0.9 2.9 2 1 1 3 3 3 1 Intraflagellar transport complex B, subunit 20 CALCOCO1 PF07888.11 gi|154151875|ref|YP_001405493.1| - 0.0039 16.1 12.4 0.0059 15.5 12.4 1.2 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like TACC_C PF05010.14 gi|154151875|ref|YP_001405493.1| - 0.004 17.0 2.6 0.004 17.0 2.6 2.2 1 1 1 2 2 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal ATG16 PF08614.11 gi|154151875|ref|YP_001405493.1| - 0.0097 16.2 19.1 0.38 10.9 9.0 2.6 1 1 2 3 3 3 3 Autophagy protein 16 (ATG16) ERM PF00769.19 gi|154151875|ref|YP_001405493.1| - 0.017 14.9 12.2 0.031 14.1 12.2 1.3 1 0 0 1 1 1 0 Ezrin/radixin/moesin family BRE1 PF08647.11 gi|154151875|ref|YP_001405493.1| - 0.022 14.8 7.3 0.022 14.8 7.3 2.3 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase Cluap1 PF10234.9 gi|154151875|ref|YP_001405493.1| - 0.033 13.6 7.9 0.05 13.0 7.9 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 Fez1 PF06818.15 gi|154151875|ref|YP_001405493.1| - 0.062 13.7 11.3 0.11 12.9 11.3 1.3 1 0 0 1 1 1 0 Fez1 CorA PF01544.18 gi|154151875|ref|YP_001405493.1| - 0.086 12.1 11.4 0.02 14.2 6.4 2.0 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Fib_alpha PF08702.10 gi|154151875|ref|YP_001405493.1| - 0.1 12.8 12.6 0.7 10.1 5.1 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF3450 PF11932.8 gi|154151875|ref|YP_001405493.1| - 0.1 11.9 15.1 0.039 13.2 4.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF484 PF04340.12 gi|154151875|ref|YP_001405493.1| - 0.18 11.5 5.7 0.64 9.7 2.5 2.3 1 1 1 2 2 2 0 Protein of unknown function, DUF484 DUF848 PF05852.11 gi|154151875|ref|YP_001405493.1| - 0.2 11.8 8.0 0.22 11.6 3.3 2.3 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) IFT57 PF10498.9 gi|154151875|ref|YP_001405493.1| - 0.24 10.3 13.3 0.22 10.5 7.0 2.0 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Transposase_24 PF03004.14 gi|154151875|ref|YP_001405493.1| - 0.26 11.4 1.7 0.88 9.7 1.5 2.1 1 1 1 2 2 2 0 Plant transposase (Ptta/En/Spm family) DUF724 PF05266.14 gi|154151875|ref|YP_001405493.1| - 0.33 10.7 10.8 1.1 9.0 11.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF724) APG6_N PF17675.1 gi|154151875|ref|YP_001405493.1| - 0.38 11.3 21.8 0.41 11.2 17.6 2.6 1 1 1 2 2 2 0 Apg6 coiled-coil region TPR_MLP1_2 PF07926.12 gi|154151875|ref|YP_001405493.1| - 0.44 10.6 18.1 11 6.0 0.9 3.0 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein DUF16 PF01519.16 gi|154151875|ref|YP_001405493.1| - 1.1 9.8 11.9 8 7.0 5.5 2.4 1 1 1 2 2 2 0 Protein of unknown function DUF16 PhoU PF01895.19 gi|154151875|ref|YP_001405493.1| - 1.1 9.8 5.9 16 6.1 0.1 3.3 2 1 1 3 3 3 0 PhoU domain DASH_Spc34 PF08657.10 gi|154151875|ref|YP_001405493.1| - 1.1 9.0 9.8 3.4 7.4 9.0 2.0 1 1 1 2 2 2 0 DASH complex subunit Spc34 DUF812 PF05667.11 gi|154151875|ref|YP_001405493.1| - 1.2 8.0 15.2 5.3 5.8 15.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Phage_GPO PF05929.11 gi|154151875|ref|YP_001405493.1| - 1.3 8.6 7.3 0.92 9.1 2.5 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Swi5 PF07061.11 gi|154151875|ref|YP_001405493.1| - 1.7 8.8 6.9 4.9 7.3 0.1 3.3 2 1 0 2 2 2 0 Swi5 ADIP PF11559.8 gi|154151875|ref|YP_001405493.1| - 1.9 8.6 19.3 2.4 8.3 8.0 2.4 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Macoilin PF09726.9 gi|154151875|ref|YP_001405493.1| - 3.4 6.1 15.4 2.4 6.6 5.2 2.0 1 1 1 2 2 2 0 Macoilin family YabA PF06156.13 gi|154151875|ref|YP_001405493.1| - 3.5 8.3 13.8 6.7 7.4 5.2 2.5 1 1 1 2 2 2 0 Initiation control protein YabA V_ATPase_I PF01496.19 gi|154151875|ref|YP_001405493.1| - 3.6 5.4 5.9 5 4.9 5.9 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Med21 PF11221.8 gi|154151875|ref|YP_001405493.1| - 4.7 7.5 13.8 1.8 8.8 0.2 3.3 2 1 1 3 3 3 0 Subunit 21 of Mediator complex CCDC-167 PF15188.6 gi|154151875|ref|YP_001405493.1| - 5.4 7.4 14.5 24 5.3 6.1 3.4 2 1 1 3 3 2 0 Coiled-coil domain-containing protein 167 DUF4407 PF14362.6 gi|154151875|ref|YP_001405493.1| - 5.6 6.2 13.0 21 4.3 13.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) CENP-F_leu_zip PF10473.9 gi|154151875|ref|YP_001405493.1| - 6.1 6.9 17.4 27 4.8 15.2 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TolA_bind_tri PF16331.5 gi|154151875|ref|YP_001405493.1| - 7 6.8 18.4 0.5 10.5 2.9 3.3 1 1 1 3 3 3 0 TolA binding protein trimerisation BLOC1_2 PF10046.9 gi|154151875|ref|YP_001405493.1| - 7.9 6.9 12.0 2 8.8 2.2 2.8 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cep57_CLD_2 PF14197.6 gi|154151875|ref|YP_001405493.1| - 8.2 6.6 16.9 8.3 6.6 5.2 2.7 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 N6_N4_Mtase PF01555.18 gi|154151876|ref|YP_001405494.1| - 4.7e-40 137.7 0.0 6.1e-40 137.4 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 gi|154151876|ref|YP_001405494.1| - 8.4e-07 29.6 0.0 0.0063 17.1 0.0 2.7 2 1 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.18 gi|154151876|ref|YP_001405494.1| - 4.9e-06 26.4 0.0 0.012 15.3 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|154151876|ref|YP_001405494.1| - 7.5e-06 26.6 0.0 0.012 16.3 0.0 3.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154151876|ref|YP_001405494.1| - 0.00012 21.9 0.0 0.025 14.4 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Met_10 PF02475.16 gi|154151876|ref|YP_001405494.1| - 0.095 12.4 0.0 0.33 10.7 0.0 1.8 2 0 0 2 2 2 0 Met-10+ like-protein Bin3 PF06859.12 gi|154151876|ref|YP_001405494.1| - 0.1 13.2 0.0 9.3 6.9 0.0 2.6 2 0 0 2 2 2 0 Bicoid-interacting protein 3 (Bin3) XhoI PF04555.13 gi|154151877|ref|YP_001405495.1| - 4.1e-78 261.7 0.0 5.2e-78 261.4 0.0 1.0 1 0 0 1 1 1 1 Restriction endonuclease XhoI Methyltransf_25 PF13649.6 gi|154151878|ref|YP_001405496.1| - 3.7e-19 69.2 0.0 5.6e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154151878|ref|YP_001405496.1| - 3.3e-16 59.7 0.0 5.4e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154151878|ref|YP_001405496.1| - 2.4e-13 50.3 0.0 4.3e-13 49.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|154151878|ref|YP_001405496.1| - 4.4e-12 45.9 0.0 5.9e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|154151878|ref|YP_001405496.1| - 1.1e-11 44.7 0.0 1.3e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154151878|ref|YP_001405496.1| - 7.7e-11 42.6 0.0 1.1e-10 42.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|154151878|ref|YP_001405496.1| - 5.5e-06 26.3 0.0 8.2e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|154151878|ref|YP_001405496.1| - 2.8e-05 24.3 0.0 3.9e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase CMAS PF02353.20 gi|154151878|ref|YP_001405496.1| - 0.00021 20.7 0.0 0.00026 20.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|154151878|ref|YP_001405496.1| - 0.00059 19.4 0.0 0.00093 18.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|154151878|ref|YP_001405496.1| - 0.00061 18.9 0.0 0.00079 18.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltr_RsmB-F PF01189.17 gi|154151878|ref|YP_001405496.1| - 0.0041 16.8 0.0 0.018 14.7 0.0 1.8 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_18 PF12847.7 gi|154151878|ref|YP_001405496.1| - 0.014 15.3 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|154151878|ref|YP_001405496.1| - 0.031 13.7 0.0 0.04 13.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|154151878|ref|YP_001405496.1| - 0.075 12.6 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW SPOUT_MTase PF02590.17 gi|154151879|ref|YP_001405497.1| - 5e-55 185.7 0.0 5.6e-55 185.6 0.0 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase HrpE PF06188.12 gi|154151880|ref|YP_001405498.1| - 0.099 12.5 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E PGK PF00162.19 gi|154151881|ref|YP_001405499.1| - 5.2e-107 358.1 0.0 5.9e-107 357.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase POT1PC PF16686.5 gi|154151881|ref|YP_001405499.1| - 0.085 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 ssDNA-binding domain of telomere protection protein ATP-synt_D PF01813.17 gi|154151882|ref|YP_001405500.1| - 4.5e-57 193.1 9.8 5.1e-57 192.9 9.8 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF3150 PF11348.8 gi|154151882|ref|YP_001405500.1| - 0.0031 16.8 1.6 0.0041 16.4 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3150) ATP-synt_ab PF00006.25 gi|154151883|ref|YP_001405501.1| - 3e-64 216.6 0.0 4.2e-64 216.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|154151883|ref|YP_001405501.1| - 3e-12 46.9 1.1 3e-12 46.9 1.1 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|154151883|ref|YP_001405501.1| - 0.053 13.7 1.3 0.11 12.6 0.6 2.1 2 0 0 2 2 2 0 HAS barrel domain ATP-synt_ab PF00006.25 gi|154151884|ref|YP_001405502.1| - 2.2e-95 318.3 0.0 3.7e-95 317.6 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|154151884|ref|YP_001405502.1| - 1e-41 141.6 0.3 2.1e-41 140.6 0.3 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|154151884|ref|YP_001405502.1| - 4.5e-13 49.5 1.1 1.3e-12 48.0 1.1 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|154151884|ref|YP_001405502.1| - 0.049 13.9 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.22 gi|154151884|ref|YP_001405502.1| - 0.072 13.3 0.9 4.7 7.5 0.1 2.9 2 1 0 2 2 2 0 Peptidase family M23 RnfC_N PF13375.6 gi|154151884|ref|YP_001405502.1| - 0.11 12.5 1.3 0.6 10.1 0.1 2.4 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 gi|154151884|ref|YP_001405502.1| - 0.2 11.5 2.6 0.3 11.0 0.8 2.3 2 0 0 2 2 2 0 Biotin-requiring enzyme ATP-synt_F PF01990.17 gi|154151885|ref|YP_001405503.1| - 5.7e-16 58.6 0.0 6.4e-16 58.5 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|154151886|ref|YP_001405504.1| - 2.1e-73 247.8 1.1 2.4e-73 247.6 1.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF2764 PF10962.8 gi|154151886|ref|YP_001405504.1| - 0.0011 18.5 0.0 0.0021 17.6 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2764) T2SSM_b PF10741.9 gi|154151886|ref|YP_001405504.1| - 0.023 14.5 0.0 0.052 13.4 0.0 1.6 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b vATP-synt_E PF01991.18 gi|154151887|ref|YP_001405505.1| - 2e-13 50.2 9.9 5.5e-13 48.8 9.9 1.6 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Cache_3-Cache_2 PF17201.4 gi|154151887|ref|YP_001405505.1| - 0.12 11.6 0.6 0.19 11.0 0.4 1.4 2 0 0 2 2 2 0 Cache 3/Cache 2 fusion domain DivIVA PF05103.13 gi|154151887|ref|YP_001405505.1| - 0.23 11.6 9.4 0.1 12.7 6.7 1.9 1 1 0 1 1 1 0 DivIVA protein ATP-synt_C PF00137.21 gi|154151888|ref|YP_001405506.1| - 1.4e-13 51.0 13.5 1.8e-13 50.6 13.5 1.1 1 0 0 1 1 1 1 ATP synthase subunit C Calponin PF00402.18 gi|154151888|ref|YP_001405506.1| - 2.7 7.7 6.0 0.28 10.9 1.2 1.9 2 0 0 2 2 2 0 Calponin family repeat V_ATPase_I PF01496.19 gi|154151889|ref|YP_001405507.1| - 1.4e-35 122.5 0.6 2.2e-18 65.6 0.0 2.8 2 1 1 3 3 3 2 V-type ATPase 116kDa subunit family DASH_Spc19 PF08287.11 gi|154151889|ref|YP_001405507.1| - 0.022 14.6 0.4 0.022 14.6 0.4 1.5 2 0 0 2 2 2 0 Spc19 Prefoldin_2 PF01920.20 gi|154151889|ref|YP_001405507.1| - 0.023 14.6 5.3 0.56 10.2 2.0 2.4 2 0 0 2 2 2 0 Prefoldin subunit Peptidase_C39 PF03412.15 gi|154151889|ref|YP_001405507.1| - 0.024 14.4 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Peptidase C39 family Mg-por_mtran_C PF07109.11 gi|154151889|ref|YP_001405507.1| - 0.026 14.9 0.0 0.074 13.4 0.0 1.9 1 0 0 1 1 1 0 Magnesium-protoporphyrin IX methyltransferase C-terminus bZIP_1 PF00170.21 gi|154151889|ref|YP_001405507.1| - 0.53 10.4 2.0 0.6 10.3 0.6 1.7 2 0 0 2 2 2 0 bZIP transcription factor DUF5446 PF17522.2 gi|154151889|ref|YP_001405507.1| - 0.54 10.5 1.6 20 5.5 0.1 2.9 3 0 0 3 3 3 0 Family of unknown function (DUF5446) Filament PF00038.21 gi|154151889|ref|YP_001405507.1| - 1.8 8.1 5.6 4.7 6.7 0.7 2.1 2 0 0 2 2 2 0 Intermediate filament protein Cep57_CLD PF14073.6 gi|154151889|ref|YP_001405507.1| - 2.1 8.3 5.8 0.16 12.0 0.9 1.5 2 0 0 2 2 2 0 Centrosome localisation domain of Cep57 CENP-F_leu_zip PF10473.9 gi|154151889|ref|YP_001405507.1| - 2.2 8.3 6.3 11 6.1 0.8 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF724 PF05266.14 gi|154151889|ref|YP_001405507.1| - 2.4 7.9 4.6 1.6 8.5 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Seryl_tRNA_N PF02403.22 gi|154151889|ref|YP_001405507.1| - 9.5 6.5 8.3 8.1 6.7 2.2 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF3552 PF12072.8 gi|154151890|ref|YP_001405508.1| - 0.0018 17.7 13.3 0.0018 17.7 13.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF3552) V-ATPase_G_2 PF16999.5 gi|154151890|ref|YP_001405508.1| - 0.0062 16.9 13.6 0.0074 16.7 13.6 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|154151890|ref|YP_001405508.1| - 0.035 14.2 17.3 0.52 10.4 16.7 2.0 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) Response_reg PF00072.24 gi|154151890|ref|YP_001405508.1| - 0.094 12.9 0.6 0.15 12.2 0.6 1.4 1 0 0 1 1 1 0 Response regulator receiver domain DivIVA PF05103.13 gi|154151890|ref|YP_001405508.1| - 0.35 11.0 15.2 1.9 8.6 15.2 1.9 1 1 0 1 1 1 0 DivIVA protein V-ATPase_G PF03179.15 gi|154151890|ref|YP_001405508.1| - 0.82 10.2 15.1 1 9.9 15.1 1.1 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit OrfB_IS605 PF01385.19 gi|154151890|ref|YP_001405508.1| - 5.3 7.3 9.9 0.46 10.7 3.6 1.9 1 1 1 2 2 2 0 Probable transposase Zn-ribbon_8 PF09723.10 gi|154151892|ref|YP_001405510.1| - 4.7e-06 26.6 2.5 7.7e-06 25.9 2.5 1.3 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|154151892|ref|YP_001405510.1| - 0.00052 20.0 0.8 0.00052 20.0 0.8 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|154151892|ref|YP_001405510.1| - 0.0008 19.4 1.0 0.001 19.0 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|154151892|ref|YP_001405510.1| - 0.001 19.0 0.5 0.65 10.0 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|154151892|ref|YP_001405510.1| - 0.0027 17.5 2.1 0.043 13.7 0.1 2.1 2 0 0 2 2 2 1 SprT-like zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|154151892|ref|YP_001405510.1| - 0.0037 17.2 0.3 0.0047 16.9 0.3 1.2 1 0 0 1 1 1 1 zinc-ribbons Zn_Tnp_IS1 PF03811.13 gi|154151892|ref|YP_001405510.1| - 0.012 15.3 5.1 0.17 11.6 0.6 2.3 2 0 0 2 2 2 0 InsA N-terminal domain FYDLN_acid PF09538.10 gi|154151892|ref|YP_001405510.1| - 0.018 15.7 1.2 0.021 15.5 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Zn_Tnp_IS91 PF14319.6 gi|154151892|ref|YP_001405510.1| - 0.04 14.0 0.7 0.053 13.6 0.7 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_4 PF13717.6 gi|154151892|ref|YP_001405510.1| - 0.057 13.4 3.3 0.72 9.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|154151892|ref|YP_001405510.1| - 0.074 12.9 4.3 1 9.3 0.7 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF35_N PF12172.8 gi|154151892|ref|YP_001405510.1| - 0.081 12.8 4.2 1.2 9.1 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|154151892|ref|YP_001405510.1| - 0.12 12.1 6.3 0.33 10.7 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2_4 PF13894.6 gi|154151892|ref|YP_001405510.1| - 0.44 11.5 2.7 1.5 9.8 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.12 gi|154151892|ref|YP_001405510.1| - 0.59 9.7 6.2 6.1 6.4 0.2 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding T2SSF PF00482.23 gi|154151893|ref|YP_001405511.1| - 2e-31 108.5 13.4 3.4e-17 62.6 4.1 4.2 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F EI24 PF07264.11 gi|154151893|ref|YP_001405511.1| - 0.044 14.0 23.8 0.21 11.8 1.3 3.6 2 1 1 3 3 3 0 Etoposide-induced protein 2.4 (EI24) T2SSE PF00437.20 gi|154151894|ref|YP_001405512.1| - 8.1e-45 153.0 0.0 1.1e-44 152.5 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|154151894|ref|YP_001405512.1| - 0.028 14.1 0.0 0.073 12.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|154151895|ref|YP_001405513.1| - 1.4e-07 31.1 0.2 2.1e-06 27.2 0.2 2.1 1 1 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|154151895|ref|YP_001405513.1| - 2.1e-05 23.9 0.0 0.00072 18.9 0.0 2.2 2 0 0 2 2 2 1 Rad51 PAXNEB PF05625.11 gi|154151895|ref|YP_001405513.1| - 0.082 12.0 0.1 1.5 7.9 0.1 2.0 2 0 0 2 2 2 0 PAXNEB protein AAA_25 PF13481.6 gi|154151895|ref|YP_001405513.1| - 0.16 11.5 0.0 0.33 10.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|154151896|ref|YP_001405514.1| - 2.9e-52 177.3 0.0 3.3e-52 177.1 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|154151896|ref|YP_001405514.1| - 6.5e-07 29.1 0.0 9.5e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|154151896|ref|YP_001405514.1| - 6.7e-06 25.8 0.0 1.7e-05 24.4 0.0 1.6 2 0 0 2 2 2 1 recA bacterial DNA recombination protein MEDS PF14417.6 gi|154151896|ref|YP_001405514.1| - 3.3e-05 23.8 0.0 0.00017 21.5 0.0 1.9 1 1 1 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Rad51 PF08423.11 gi|154151896|ref|YP_001405514.1| - 0.00022 20.6 0.2 0.00036 19.9 0.2 1.4 1 1 0 1 1 1 1 Rad51 PAXNEB PF05625.11 gi|154151896|ref|YP_001405514.1| - 0.00026 20.3 0.4 0.075 12.2 0.1 2.1 2 0 0 2 2 2 2 PAXNEB protein AAA_14 PF13173.6 gi|154151896|ref|YP_001405514.1| - 0.00039 20.4 0.2 0.0057 16.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|154151896|ref|YP_001405514.1| - 0.00049 18.9 0.2 0.0079 14.9 0.2 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|154151896|ref|YP_001405514.1| - 0.0005 19.5 0.0 0.0061 15.9 0.0 2.2 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|154151896|ref|YP_001405514.1| - 0.00061 19.6 0.1 0.003 17.3 0.1 2.3 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|154151896|ref|YP_001405514.1| - 0.017 14.9 0.0 0.7 9.6 0.0 2.1 1 1 0 2 2 2 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.9 gi|154151896|ref|YP_001405514.1| - 0.11 11.4 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Rhomboid_N PF12122.8 gi|154151896|ref|YP_001405514.1| - 0.13 12.5 0.1 6.3 7.0 0.0 2.9 2 1 1 3 3 3 0 Cytoplasmic N-terminal domain of rhomboid serine protease DELLA PF12041.8 gi|154151896|ref|YP_001405514.1| - 0.13 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator DELLA protein N terminal FmdE PF02663.14 gi|154151898|ref|YP_001405516.1| - 7.5e-30 103.7 0.1 9.9e-30 103.3 0.1 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|154151898|ref|YP_001405516.1| - 6.9e-11 41.9 0.5 1.4e-10 40.9 0.5 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_2 PF13240.6 gi|154151898|ref|YP_001405516.1| - 0.0021 17.7 5.8 0.3 10.9 0.3 2.9 2 1 1 3 3 3 2 zinc-ribbon domain LIM PF00412.22 gi|154151898|ref|YP_001405516.1| - 0.018 15.2 0.3 0.041 14.1 0.3 1.6 1 0 0 1 1 1 0 LIM domain zf-RING_2 PF13639.6 gi|154151898|ref|YP_001405516.1| - 0.034 14.5 0.2 0.082 13.3 0.2 1.7 1 0 0 1 1 1 0 Ring finger domain DZR PF12773.7 gi|154151898|ref|YP_001405516.1| - 0.041 13.9 1.1 0.072 13.1 0.2 1.8 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|154151898|ref|YP_001405516.1| - 0.093 12.2 4.4 2.8 7.5 1.8 2.7 2 1 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|154151898|ref|YP_001405516.1| - 0.11 12.4 0.7 0.31 11.0 0.7 1.8 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Prim_Zn_Ribbon PF08273.12 gi|154151898|ref|YP_001405516.1| - 0.19 12.1 2.2 15 5.9 0.4 2.3 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase TF_Zn_Ribbon PF08271.12 gi|154151898|ref|YP_001405516.1| - 0.2 11.2 3.8 0.27 10.8 0.3 2.6 1 1 0 2 2 2 0 TFIIB zinc-binding Methyltransf_25 PF13649.6 gi|154151899|ref|YP_001405517.1| - 5e-12 46.4 0.0 1.5e-11 44.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154151899|ref|YP_001405517.1| - 3.8e-10 39.8 0.0 5.7e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154151899|ref|YP_001405517.1| - 2.4e-09 37.7 0.0 4.4e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154151899|ref|YP_001405517.1| - 3.5e-08 34.1 0.0 5.6e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|154151899|ref|YP_001405517.1| - 3.1e-05 23.8 0.0 4.8e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain SAM_MT PF04445.13 gi|154151899|ref|YP_001405517.1| - 9e-05 22.0 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase Met_10 PF02475.16 gi|154151899|ref|YP_001405517.1| - 0.00044 20.0 0.0 0.00062 19.6 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein RrnaAD PF00398.20 gi|154151899|ref|YP_001405517.1| - 0.0012 18.0 0.0 0.0017 17.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.15 gi|154151899|ref|YP_001405517.1| - 0.0023 17.3 0.0 0.0044 16.4 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G TehB PF03848.14 gi|154151899|ref|YP_001405517.1| - 0.0024 17.3 0.0 0.0039 16.6 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.19 gi|154151899|ref|YP_001405517.1| - 0.0092 15.8 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|154151899|ref|YP_001405517.1| - 0.0096 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|154151899|ref|YP_001405517.1| - 0.015 14.6 0.0 0.021 14.1 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF346 PF03984.13 gi|154151899|ref|YP_001405517.1| - 0.048 13.4 3.7 1.5 8.6 0.5 2.4 2 0 0 2 2 2 0 Repeat of unknown function (DUF346) Ubie_methyltran PF01209.18 gi|154151899|ref|YP_001405517.1| - 0.076 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|154151899|ref|YP_001405517.1| - 0.082 12.3 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|154151900|ref|YP_001405518.1| - 7.5e-08 33.0 0.0 1.3e-07 32.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|154151900|ref|YP_001405518.1| - 2.1e-07 31.6 0.0 3.5e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|154151900|ref|YP_001405518.1| - 6.3e-07 29.4 0.0 9e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|154151900|ref|YP_001405518.1| - 2.6e-05 24.8 0.0 4.5e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|154151900|ref|YP_001405518.1| - 0.00085 18.5 0.0 0.0012 18.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_16 PF10294.9 gi|154151900|ref|YP_001405518.1| - 0.0048 16.6 0.8 0.0077 16.0 0.0 1.7 2 0 0 2 2 2 1 Lysine methyltransferase Met_10 PF02475.16 gi|154151900|ref|YP_001405518.1| - 0.0075 16.0 0.0 0.023 14.4 0.0 1.7 2 1 0 2 2 2 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|154151900|ref|YP_001405518.1| - 0.012 15.4 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|154151900|ref|YP_001405518.1| - 0.013 15.0 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain CMAS PF02353.20 gi|154151900|ref|YP_001405518.1| - 0.033 13.5 0.0 0.09 12.0 0.0 1.7 1 1 1 2 2 2 0 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|154151900|ref|YP_001405518.1| - 0.034 13.9 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|154151900|ref|YP_001405518.1| - 0.036 13.5 0.0 0.05 13.0 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB SAM_MT PF04445.13 gi|154151900|ref|YP_001405518.1| - 0.057 12.8 0.0 0.077 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Phage_P2_GpE PF06528.12 gi|154151900|ref|YP_001405518.1| - 0.19 11.3 0.0 0.19 11.3 0.0 2.0 2 0 0 2 2 1 0 Phage P2 GpE DUF3807 PF12720.7 gi|154151901|ref|YP_001405519.1| - 0.024 14.9 0.2 0.024 14.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3807) Radical_SAM PF04055.21 gi|154151902|ref|YP_001405520.1| - 2.3e-12 47.6 0.0 2.3e-12 47.6 0.0 2.5 3 0 0 3 3 3 1 Radical SAM superfamily Peripla_BP_2 PF01497.18 gi|154151902|ref|YP_001405520.1| - 4.4e-10 39.5 0.0 6.4e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Fer4_12 PF13353.6 gi|154151902|ref|YP_001405520.1| - 0.00015 22.1 0.0 0.0003 21.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF364 PF04016.12 gi|154151903|ref|YP_001405521.1| - 2e-44 150.7 0.0 2.8e-44 150.3 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|154151903|ref|YP_001405521.1| - 3e-16 59.4 0.0 5.8e-16 58.5 0.0 1.5 1 0 0 1 1 1 1 Putative heavy-metal chelation MetOD2 PF18548.1 gi|154151904|ref|YP_001405522.1| - 1.3e-33 114.9 0.4 1.9e-33 114.4 0.4 1.2 1 0 0 1 1 1 1 Metanogen output domain 2 Response_reg PF00072.24 gi|154151904|ref|YP_001405522.1| - 1.4e-18 67.1 0.1 2.3e-18 66.4 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain DASH_Dad3 PF08656.10 gi|154151904|ref|YP_001405522.1| - 0.12 12.5 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 DASH complex subunit Dad3 Response_reg PF00072.24 gi|154151905|ref|YP_001405523.1| - 1.9e-19 69.8 0.0 3.8e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|154151905|ref|YP_001405523.1| - 3.5e-19 69.1 0.0 0.00023 21.4 0.0 5.4 5 0 0 5 5 5 3 PAS fold PAS PF00989.25 gi|154151905|ref|YP_001405523.1| - 4.8e-19 68.4 0.0 7.4e-06 25.9 0.0 4.8 5 0 0 5 5 5 3 PAS fold PAS_9 PF13426.7 gi|154151905|ref|YP_001405523.1| - 7e-19 68.0 0.0 4.9e-05 23.5 0.0 4.8 4 1 0 4 4 4 4 PAS domain PAS_8 PF13188.7 gi|154151905|ref|YP_001405523.1| - 3.9e-18 65.0 0.0 8.4e-07 28.9 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|154151905|ref|YP_001405523.1| - 2e-17 63.3 0.0 1.9e-08 34.5 0.1 4.7 5 0 0 5 5 5 2 PAS fold HATPase_c PF02518.26 gi|154151905|ref|YP_001405523.1| - 6.7e-17 62.0 0.0 1.3e-16 61.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MLTR_LBD PF17765.1 gi|154151905|ref|YP_001405523.1| - 0.0061 16.7 0.0 0.63 10.1 0.0 2.6 2 0 0 2 2 2 1 MmyB-like transcription regulator ligand binding domain PAS_7 PF12860.7 gi|154151905|ref|YP_001405523.1| - 0.017 15.2 0.0 36 4.6 0.0 3.7 3 0 0 3 3 3 0 PAS fold HATPase_c_5 PF14501.6 gi|154151905|ref|YP_001405523.1| - 0.085 12.8 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 GHKL domain HisKA PF00512.25 gi|154151905|ref|YP_001405523.1| - 0.1 12.7 0.1 0.29 11.2 0.1 1.8 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|154151905|ref|YP_001405523.1| - 0.19 11.5 0.0 0.36 10.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TPR_1 PF00515.28 gi|154151906|ref|YP_001405524.1| - 3.5e-47 156.4 0.2 3.3e-09 36.2 0.1 7.3 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|154151906|ref|YP_001405524.1| - 1.4e-43 143.5 0.9 1.2e-07 31.3 0.3 6.5 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|154151906|ref|YP_001405524.1| - 6.6e-41 135.1 0.0 2.1e-07 30.6 0.0 6.7 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|154151906|ref|YP_001405524.1| - 1.4e-40 136.7 0.4 1.2e-08 34.5 0.1 5.4 2 1 3 5 5 5 5 TPR repeat TPR_17 PF13431.6 gi|154151906|ref|YP_001405524.1| - 1.4e-34 116.0 1.1 4.9e-07 29.7 0.1 6.8 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|154151906|ref|YP_001405524.1| - 2.1e-31 108.3 19.1 9e-10 39.0 0.3 4.8 3 1 3 6 6 5 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|154151906|ref|YP_001405524.1| - 9.6e-27 91.4 11.6 3e-05 24.5 0.2 6.0 2 2 4 6 6 5 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|154151906|ref|YP_001405524.1| - 2.1e-25 88.7 2.5 1.3e-06 28.4 0.5 5.0 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|154151906|ref|YP_001405524.1| - 1.4e-23 82.9 9.9 1.9e-08 34.4 0.6 4.5 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|154151906|ref|YP_001405524.1| - 4.4e-22 76.4 0.7 0.00099 19.0 0.0 6.6 6 0 0 6 6 6 5 Tetratricopeptide repeat Pkinase_Tyr PF07714.17 gi|154151906|ref|YP_001405524.1| - 3.3e-20 72.5 0.0 4.5e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase TPR_19 PF14559.6 gi|154151906|ref|YP_001405524.1| - 8.1e-19 67.9 2.7 1.1e-06 29.0 0.1 3.8 2 1 2 4 4 4 4 Tetratricopeptide repeat Pkinase PF00069.25 gi|154151906|ref|YP_001405524.1| - 5e-18 65.4 0.0 8e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain TPR_4 PF07721.14 gi|154151906|ref|YP_001405524.1| - 7.3e-11 41.6 4.6 1.4 9.8 0.0 6.3 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|154151906|ref|YP_001405524.1| - 3.1e-10 39.6 7.3 0.39 10.7 0.9 6.0 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_21 PF09976.9 gi|154151906|ref|YP_001405524.1| - 2.6e-09 37.0 1.3 0.24 11.1 0.0 5.2 2 1 3 5 5 5 2 Tetratricopeptide repeat-like domain TPR_6 PF13174.6 gi|154151906|ref|YP_001405524.1| - 2.3e-08 34.1 0.3 2.6 8.9 0.0 6.1 6 0 0 6 6 5 2 Tetratricopeptide repeat BTAD PF03704.17 gi|154151906|ref|YP_001405524.1| - 9.6e-08 32.6 1.1 0.011 16.2 0.0 3.1 3 0 0 3 3 3 2 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|154151906|ref|YP_001405524.1| - 4.8e-06 26.7 1.3 2.7 8.1 0.0 4.8 2 2 1 4 4 4 1 Domain of Unknown Function (DUF3856) ANAPC3 PF12895.7 gi|154151906|ref|YP_001405524.1| - 4.1e-05 23.7 0.0 2.5 8.4 0.0 3.3 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.18 gi|154151906|ref|YP_001405524.1| - 9.6e-05 22.4 1.9 6.9 6.8 0.1 4.6 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain TPR_15 PF13429.6 gi|154151906|ref|YP_001405524.1| - 0.0001 21.7 1.4 0.018 14.2 0.7 2.8 1 1 0 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|154151906|ref|YP_001405524.1| - 0.00045 19.3 0.0 1.4 7.8 0.0 3.3 2 1 0 3 3 3 1 NMDA receptor-regulated protein 1 RPN7 PF10602.9 gi|154151906|ref|YP_001405524.1| - 0.00048 19.9 0.2 8.6 6.0 0.0 4.3 4 1 1 5 5 5 0 26S proteasome subunit RPN7 PPR PF01535.20 gi|154151906|ref|YP_001405524.1| - 0.0018 18.4 4.9 60 4.2 0.0 6.7 8 0 0 8 8 7 0 PPR repeat Kinase-like PF14531.6 gi|154151906|ref|YP_001405524.1| - 0.0048 16.2 0.0 0.017 14.5 0.0 1.8 2 0 0 2 2 2 1 Kinase-like SHNi-TPR PF10516.9 gi|154151906|ref|YP_001405524.1| - 0.029 13.8 2.5 12 5.4 0.2 4.1 4 0 0 4 4 4 0 SHNi-TPR TPR_MalT PF17874.1 gi|154151906|ref|YP_001405524.1| - 0.1 11.9 0.0 36 3.6 0.0 3.2 2 1 2 4 4 4 0 MalT-like TPR region Alanine_zipper PF11839.8 gi|154151907|ref|YP_001405525.1| - 0.35 11.3 5.2 0.55 10.6 5.2 1.3 1 0 0 1 1 1 0 Alanine-zipper, major outer membrane lipoprotein SBP_bac_6 PF13343.6 gi|154151908|ref|YP_001405526.1| - 2e-66 223.9 0.0 2.6e-66 223.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1858 PF08984.11 gi|154151908|ref|YP_001405526.1| - 0.00052 20.1 0.0 0.00085 19.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1858) cobW PF02492.19 gi|154151909|ref|YP_001405527.1| - 3e-12 46.5 0.0 2.5e-11 43.5 0.0 2.0 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|154151909|ref|YP_001405527.1| - 8.7e-05 23.0 0.0 0.015 15.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain RecA PF00154.21 gi|154151909|ref|YP_001405527.1| - 0.0038 16.7 0.0 0.0066 15.9 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_22 PF13401.6 gi|154151909|ref|YP_001405527.1| - 0.0078 16.5 0.0 0.51 10.6 0.0 2.4 2 1 1 3 3 3 1 AAA domain MeaB PF03308.16 gi|154151909|ref|YP_001405527.1| - 0.0085 15.1 0.1 1.2 8.1 0.0 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|154151909|ref|YP_001405527.1| - 0.0096 16.1 0.0 2.9 8.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain DnaB_C PF03796.15 gi|154151909|ref|YP_001405527.1| - 0.019 14.3 0.1 0.028 13.8 0.1 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_19 PF13245.6 gi|154151909|ref|YP_001405527.1| - 0.036 14.4 0.1 0.078 13.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|154151909|ref|YP_001405527.1| - 0.037 14.0 0.0 4.9 7.1 0.0 2.6 3 0 0 3 3 3 0 NACHT domain MobB PF03205.14 gi|154151909|ref|YP_001405527.1| - 0.042 13.7 0.0 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF4795 PF16043.5 gi|154151909|ref|YP_001405527.1| - 0.077 12.6 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) KTI12 PF08433.10 gi|154151909|ref|YP_001405527.1| - 0.082 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF1846 PF08903.11 gi|154151909|ref|YP_001405527.1| - 0.09 11.3 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1846) DUF5414 PF17435.2 gi|154151909|ref|YP_001405527.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5414) AAA_11 PF13086.6 gi|154151909|ref|YP_001405527.1| - 0.16 11.7 0.0 0.35 10.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|154151909|ref|YP_001405527.1| - 0.17 11.6 0.4 4.3 7.0 0.2 2.3 2 1 0 2 2 2 0 AAA domain AAA_21 PF13304.6 gi|154151910|ref|YP_001405528.1| - 2.9e-11 43.7 0.2 1e-05 25.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|154151910|ref|YP_001405528.1| - 3.4e-10 40.6 0.0 5.2e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|154151910|ref|YP_001405528.1| - 5.8e-05 23.5 0.1 7.9e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|154151910|ref|YP_001405528.1| - 0.00016 21.2 0.1 0.46 9.9 0.0 2.3 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|154151910|ref|YP_001405528.1| - 0.0002 21.7 0.3 0.0025 18.1 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|154151910|ref|YP_001405528.1| - 0.013 15.5 0.0 1.5 8.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|154151910|ref|YP_001405528.1| - 0.088 12.5 1.1 0.22 11.2 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|154151910|ref|YP_001405528.1| - 0.091 13.3 0.2 0.15 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|154151910|ref|YP_001405528.1| - 0.12 12.2 0.1 0.25 11.1 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain TipE PF16972.5 gi|154151910|ref|YP_001405528.1| - 0.12 11.6 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Na+ channel auxiliary subunit TipE SBP_bac_11 PF13531.6 gi|154151911|ref|YP_001405529.1| - 2.8e-11 43.6 0.2 4.3e-11 43.0 0.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.20 gi|154151911|ref|YP_001405529.1| - 6.2e-05 22.5 0.1 9.1e-05 22.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|154151911|ref|YP_001405529.1| - 7.7e-05 22.4 0.2 0.00019 21.1 0.2 1.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|154151911|ref|YP_001405529.1| - 0.00032 20.7 0.0 0.0006 19.8 0.0 1.4 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_1 PF01547.25 gi|154151911|ref|YP_001405529.1| - 0.028 14.4 0.4 0.18 11.7 0.3 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Pilin_N PF07790.11 gi|154151912|ref|YP_001405530.1| - 3.2e-24 85.7 1.7 6e-24 84.8 1.7 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal 60KD_IMP PF02096.20 gi|154151912|ref|YP_001405530.1| - 0.092 12.6 0.1 0.25 11.2 0.1 1.9 1 1 0 1 1 1 0 60Kd inner membrane protein Pilin_N PF07790.11 gi|154151913|ref|YP_001405531.1| - 6.8e-16 59.0 1.6 1.2e-15 58.2 1.6 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|154151914|ref|YP_001405532.1| - 4.1e-25 88.5 5.0 2.5e-23 82.8 3.3 2.5 2 0 0 2 2 2 2 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|154151915|ref|YP_001405533.1| - 5.4e-17 62.5 5.1 1.4e-16 61.2 5.1 1.7 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Na_H_antiport_2 PF13726.6 gi|154151915|ref|YP_001405533.1| - 0.97 9.6 6.6 0.8 9.9 3.8 2.1 2 0 0 2 2 2 0 Na+-H+ antiporter family SBP_bac_5 PF00496.22 gi|154151916|ref|YP_001405534.1| - 4.8e-68 229.8 1.8 6.8e-68 229.3 1.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Laterosporulin PF17861.1 gi|154151916|ref|YP_001405534.1| - 0.13 12.6 0.1 0.4 11.1 0.1 1.8 1 0 0 1 1 1 0 Laterosporulin defensin-like peptide BPD_transp_1 PF00528.22 gi|154151917|ref|YP_001405535.1| - 1.5e-35 122.6 16.8 1.5e-35 122.6 16.8 1.7 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|154151918|ref|YP_001405536.1| - 2.4e-22 79.6 15.4 2.4e-22 79.6 15.4 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|154151918|ref|YP_001405536.1| - 0.0014 18.5 6.6 0.0034 17.3 0.7 2.7 2 0 0 2 2 2 2 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|154151919|ref|YP_001405537.1| - 8.6e-22 78.1 0.0 1.1e-21 77.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|154151919|ref|YP_001405537.1| - 3e-15 56.5 0.1 5.2e-15 55.7 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|154151919|ref|YP_001405537.1| - 2.8e-07 30.7 0.0 9.1e-07 29.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|154151919|ref|YP_001405537.1| - 0.023 13.4 0.0 0.033 12.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|154151919|ref|YP_001405537.1| - 0.05 13.0 0.0 0.29 10.5 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|154151919|ref|YP_001405537.1| - 0.061 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|154151919|ref|YP_001405537.1| - 0.078 13.4 0.1 0.14 12.6 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|154151919|ref|YP_001405537.1| - 0.12 12.1 0.0 0.31 10.8 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|154151920|ref|YP_001405538.1| - 3.6e-33 115.0 0.0 9e-33 113.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter SMC_N PF02463.19 gi|154151920|ref|YP_001405538.1| - 2.4e-08 33.7 0.0 5.4e-08 32.5 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|154151920|ref|YP_001405538.1| - 4.1e-06 26.8 1.2 0.008 16.0 0.1 2.3 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system oligo_HPY PF08352.12 gi|154151920|ref|YP_001405538.1| - 0.0018 18.8 0.0 0.0031 18.0 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|154151920|ref|YP_001405538.1| - 0.0028 18.1 0.1 0.0038 17.6 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|154151920|ref|YP_001405538.1| - 0.017 14.9 0.2 0.031 14.0 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|154151920|ref|YP_001405538.1| - 0.045 14.0 1.0 0.52 10.6 1.0 2.1 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|154151920|ref|YP_001405538.1| - 0.12 12.3 0.4 0.22 11.4 0.1 1.5 2 0 0 2 2 2 0 RsgA GTPase Pilin_N PF07790.11 gi|154151921|ref|YP_001405539.1| - 7.8e-21 74.8 0.5 1.5e-20 73.9 0.5 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|154151923|ref|YP_001405541.1| - 1.5e-19 70.7 0.1 2.7e-19 69.9 0.1 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal T2SSF PF00482.23 gi|154151924|ref|YP_001405542.1| - 1.5e-23 83.1 3.1 7.9e-13 48.4 0.1 3.6 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F PHO4 PF01384.20 gi|154151924|ref|YP_001405542.1| - 5.9 5.8 7.9 19 4.2 7.8 1.9 1 1 0 1 1 1 0 Phosphate transporter family T2SSE PF00437.20 gi|154151925|ref|YP_001405543.1| - 8.7e-55 185.7 0.0 1.3e-54 185.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_27 PF13514.6 gi|154151925|ref|YP_001405543.1| - 0.079 12.5 0.1 0.72 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain BofA PF07441.11 gi|154151927|ref|YP_001405545.1| - 6.4e-15 55.1 17.3 7.5e-15 54.9 17.3 1.0 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA PTPS_related PF10131.9 gi|154151927|ref|YP_001405545.1| - 1.7 6.8 7.9 1.8 6.8 7.9 1.1 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein DUF4131 PF13567.6 gi|154151927|ref|YP_001405545.1| - 7.1 6.2 7.1 7.3 6.2 6.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) PmbA_TldD PF01523.16 gi|154151928|ref|YP_001405546.1| - 1.8e-53 182.2 0.0 2.3e-53 181.9 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|154151929|ref|YP_001405547.1| - 5.8e-48 164.1 0.0 7.1e-48 163.9 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.13 gi|154151930|ref|YP_001405548.1| - 1.1e-34 119.8 5.8 2.2e-34 118.8 5.8 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|154151930|ref|YP_001405548.1| - 9.2e-31 107.2 0.0 2e-21 76.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|154151930|ref|YP_001405548.1| - 6.6e-16 58.5 0.1 1.7e-07 31.1 0.0 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|154151930|ref|YP_001405548.1| - 6.8e-16 58.3 0.6 1.7e-10 40.6 0.1 2.7 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|154151930|ref|YP_001405548.1| - 8.4e-11 42.0 0.0 0.00042 20.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|154151930|ref|YP_001405548.1| - 7.2e-10 38.8 0.5 1.5e-09 37.8 0.5 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 gi|154151930|ref|YP_001405548.1| - 5.7e-08 33.3 0.3 0.013 15.9 0.0 4.5 5 0 0 5 5 4 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|154151930|ref|YP_001405548.1| - 3.4e-07 29.6 0.0 0.015 14.4 0.0 2.6 2 0 0 2 2 2 2 MCM P-loop domain Sigma54_activ_2 PF14532.6 gi|154151930|ref|YP_001405548.1| - 9.5e-07 29.0 0.0 0.03 14.4 0.0 3.5 2 1 1 3 3 3 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|154151930|ref|YP_001405548.1| - 1.5e-06 28.0 0.1 0.0037 17.0 0.0 3.0 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|154151930|ref|YP_001405548.1| - 7e-06 26.4 1.5 0.0027 18.0 0.2 3.6 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|154151930|ref|YP_001405548.1| - 2.1e-05 24.8 0.0 0.0013 19.0 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_3 PF07726.11 gi|154151930|ref|YP_001405548.1| - 2.6e-05 24.1 0.0 0.18 11.6 0.0 3.0 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|154151930|ref|YP_001405548.1| - 4.7e-05 23.0 0.0 0.00018 21.1 0.0 2.0 3 0 0 3 3 2 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|154151930|ref|YP_001405548.1| - 6.4e-05 22.8 0.1 0.0066 16.2 0.0 3.3 3 0 0 3 3 3 1 AAA domain PhoH PF02562.16 gi|154151930|ref|YP_001405548.1| - 0.00025 20.6 0.1 0.0029 17.1 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_16 PF13191.6 gi|154151930|ref|YP_001405548.1| - 0.00072 20.0 0.0 0.081 13.3 0.0 2.9 3 0 0 3 3 3 1 AAA ATPase domain TIP49 PF06068.13 gi|154151930|ref|YP_001405548.1| - 0.0035 16.6 0.1 0.37 9.9 0.1 2.7 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|154151930|ref|YP_001405548.1| - 0.0052 16.9 0.0 0.013 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain Parvo_NS1 PF01057.17 gi|154151930|ref|YP_001405548.1| - 0.0077 15.4 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 DUF815 PF05673.13 gi|154151930|ref|YP_001405548.1| - 0.0084 15.3 0.0 0.018 14.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|154151930|ref|YP_001405548.1| - 0.015 15.5 0.0 9.9 6.2 0.0 3.3 3 0 0 3 3 3 0 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.17 gi|154151930|ref|YP_001405548.1| - 0.017 14.9 0.1 0.069 12.9 0.0 1.9 1 1 0 2 2 2 0 IstB-like ATP binding protein MgtC PF02308.16 gi|154151930|ref|YP_001405548.1| - 0.026 14.9 1.2 0.036 14.4 0.1 1.8 2 0 0 2 2 1 0 MgtC family AAA_10 PF12846.7 gi|154151930|ref|YP_001405548.1| - 0.032 13.1 0.0 0.061 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain ABC_tran PF00005.27 gi|154151930|ref|YP_001405548.1| - 0.036 14.6 0.0 0.15 12.6 0.0 2.0 2 0 0 2 2 1 0 ABC transporter NACHT PF05729.12 gi|154151930|ref|YP_001405548.1| - 0.054 13.4 0.0 0.19 11.7 0.0 1.9 1 0 0 1 1 1 0 NACHT domain AAA_PrkA PF08298.11 gi|154151930|ref|YP_001405548.1| - 0.062 12.2 0.0 7.2 5.4 0.0 2.2 2 0 0 2 2 2 0 PrkA AAA domain ResIII PF04851.15 gi|154151930|ref|YP_001405548.1| - 0.072 13.1 0.2 1.5 8.8 0.0 2.6 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit DUF2101 PF09874.9 gi|154151930|ref|YP_001405548.1| - 0.11 12.2 0.1 0.17 11.6 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) TrwB_AAD_bind PF10412.9 gi|154151930|ref|YP_001405548.1| - 0.11 11.4 0.0 0.2 10.5 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Pribosyltran_N PF13793.6 gi|154151931|ref|YP_001405549.1| - 4.7e-20 71.7 0.0 1.5e-19 70.0 0.0 1.8 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|154151931|ref|YP_001405549.1| - 8.6e-13 48.1 0.1 2e-12 46.9 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|154151931|ref|YP_001405549.1| - 6.2e-09 36.2 0.1 1.1e-08 35.4 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|154151931|ref|YP_001405549.1| - 0.0018 17.8 0.0 0.0033 16.9 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|154151931|ref|YP_001405549.1| - 0.0089 15.5 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase PIN_6 PF17146.4 gi|154151932|ref|YP_001405550.1| - 5.7e-16 58.8 0.0 8.7e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|154151932|ref|YP_001405550.1| - 2.5e-05 23.8 0.1 0.00099 18.6 0.1 2.1 2 0 0 2 2 2 1 PINc domain ribonuclease zinc-ribbons_6 PF07191.12 gi|154151932|ref|YP_001405550.1| - 0.012 15.6 0.1 0.021 14.8 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.6 gi|154151932|ref|YP_001405550.1| - 0.036 13.9 0.8 0.066 13.1 0.8 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PIN PF01850.21 gi|154151932|ref|YP_001405550.1| - 0.056 13.9 0.4 0.18 12.3 0.4 1.9 1 1 0 1 1 1 0 PIN domain Zn_ribbon_SprT PF17283.2 gi|154151932|ref|YP_001405550.1| - 0.077 12.9 6.3 2.4 8.2 3.4 2.5 2 0 0 2 2 2 0 SprT-like zinc ribbon domain HypA PF01155.19 gi|154151932|ref|YP_001405550.1| - 0.082 12.9 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|154151932|ref|YP_001405550.1| - 0.16 11.8 2.6 0.41 10.6 2.6 1.7 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|154151932|ref|YP_001405550.1| - 0.46 10.7 6.0 1.6 8.9 6.0 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2 PF00096.26 gi|154151932|ref|YP_001405550.1| - 0.9 10.1 4.0 8.4 7.1 1.2 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type Pribosyltran PF00156.27 gi|154151933|ref|YP_001405551.1| - 2.1e-16 59.8 0.1 2.7e-16 59.5 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|154151933|ref|YP_001405551.1| - 0.0013 18.2 0.1 0.0017 17.9 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_7 PF02796.15 gi|154151933|ref|YP_001405551.1| - 0.0031 17.6 0.0 0.0072 16.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|154151933|ref|YP_001405551.1| - 0.0041 16.9 0.0 0.039 13.8 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain PRTase_2 PF15609.6 gi|154151933|ref|YP_001405551.1| - 0.012 15.1 0.0 0.02 14.4 0.0 1.3 1 1 0 1 1 1 0 Phosphoribosyl transferase GerE PF00196.19 gi|154151933|ref|YP_001405551.1| - 0.028 14.0 0.0 0.056 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.7 gi|154151933|ref|YP_001405551.1| - 0.16 12.0 0.0 0.64 10.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Cpn60_TCP1 PF00118.24 gi|154151934|ref|YP_001405552.1| - 7.3e-162 539.4 17.0 8.6e-162 539.2 17.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family SidC_N PF18219.1 gi|154151934|ref|YP_001405552.1| - 0.13 11.2 0.2 0.31 10.0 0.2 1.4 1 1 0 1 1 1 0 SidC N-terminal domain Glyco_trans_1_3 PF13528.6 gi|154151936|ref|YP_001405554.1| - 1.1e-07 31.4 0.0 0.00023 20.5 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_transf_4 PF13439.6 gi|154151936|ref|YP_001405554.1| - 0.0039 17.2 0.0 0.0094 16.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_tran_28_C PF04101.16 gi|154151936|ref|YP_001405554.1| - 0.005 16.8 0.0 0.0076 16.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Mu-like_Com PF10122.9 gi|154151936|ref|YP_001405554.1| - 0.2 11.1 0.3 0.56 9.7 0.3 1.7 1 0 0 1 1 1 0 Mu-like prophage protein Com Imp-YgjV PF10688.9 gi|154151937|ref|YP_001405555.1| - 0.0049 16.7 0.3 0.0064 16.3 0.3 1.2 1 0 0 1 1 1 1 Bacterial inner membrane protein PhoU PF01895.19 gi|154151939|ref|YP_001405557.1| - 1.8e-20 73.2 7.7 1.1e-18 67.5 1.6 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|154151939|ref|YP_001405557.1| - 2.5e-08 33.6 0.0 6e-08 32.4 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin LMWPc PF01451.21 gi|154151940|ref|YP_001405558.1| - 6.1e-17 62.3 0.0 7.1e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF898 PF05987.13 gi|154151941|ref|YP_001405559.1| - 0.045 12.8 3.7 0.046 12.8 3.7 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) TPPK_C PF12555.8 gi|154151941|ref|YP_001405559.1| - 0.063 13.3 5.9 0.14 12.2 1.6 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal SdpI PF13630.6 gi|154151941|ref|YP_001405559.1| - 0.32 11.2 6.3 0.42 10.8 6.3 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF4282 PF14110.6 gi|154151941|ref|YP_001405559.1| - 1.4 9.7 8.3 3.1 8.6 1.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4282) DUF5518 PF17647.1 gi|154151942|ref|YP_001405560.1| - 0.16 12.2 23.0 0.58 10.3 15.5 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5518) VSP PF03302.13 gi|154151942|ref|YP_001405560.1| - 0.25 10.2 0.4 0.45 9.3 0.4 1.3 1 0 0 1 1 1 0 Giardia variant-specific surface protein S1FA PF04689.13 gi|154151942|ref|YP_001405560.1| - 0.29 11.3 6.3 0.46 10.7 0.0 2.7 3 0 0 3 3 3 0 DNA binding protein S1FA Syndecan PF01034.20 gi|154151942|ref|YP_001405560.1| - 9.6 6.2 14.5 2.6 8.1 0.9 3.2 2 1 1 3 3 3 0 Syndecan domain T2SSF PF00482.23 gi|154151943|ref|YP_001405561.1| - 3.2e-15 56.2 0.1 3.2e-15 56.2 0.1 1.9 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF5321 PF17254.2 gi|154151943|ref|YP_001405561.1| - 0.029 13.8 0.5 0.08 12.4 0.0 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5321) DUF2207 PF09972.9 gi|154151943|ref|YP_001405561.1| - 2.4 6.8 6.8 6.6 5.4 0.5 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) T2SSF PF00482.23 gi|154151944|ref|YP_001405562.1| - 3.7e-14 52.7 4.2 4.2e-14 52.6 0.9 2.3 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F Big_1 PF02369.16 gi|154151944|ref|YP_001405562.1| - 2.5e-06 27.4 3.3 7.7e-06 25.8 3.3 1.9 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|154151944|ref|YP_001405562.1| - 0.00055 20.2 3.8 0.00055 20.2 3.8 1.7 2 0 0 2 2 2 1 Invasin, domain 3 CarboxypepD_reg PF13620.6 gi|154151944|ref|YP_001405562.1| - 0.0061 16.8 3.6 0.018 15.3 3.6 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DPM2 PF07297.12 gi|154151944|ref|YP_001405562.1| - 0.02 15.2 5.6 2.8 8.3 2.4 2.6 2 0 0 2 2 2 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) DUF420 PF04238.12 gi|154151944|ref|YP_001405562.1| - 0.038 14.3 1.9 0.85 9.9 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF420) PIG-P PF08510.12 gi|154151944|ref|YP_001405562.1| - 0.072 13.0 1.0 0.31 11.0 0.0 2.3 2 0 0 2 2 2 0 PIG-P CcmH PF03918.14 gi|154151944|ref|YP_001405562.1| - 0.17 11.2 0.0 0.4 10.0 0.0 1.6 1 0 0 1 1 1 0 Cytochrome C biogenesis protein Response_reg PF00072.24 gi|154151946|ref|YP_001405564.1| - 4.5e-25 88.0 0.0 5.5e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HisKA_2 PF07568.12 gi|154151947|ref|YP_001405565.1| - 1.3e-23 82.9 1.8 2.5e-23 81.9 1.8 1.5 1 0 0 1 1 1 1 Histidine kinase PAS_8 PF13188.7 gi|154151947|ref|YP_001405565.1| - 6.9e-06 26.0 0.0 1.8e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain HWE_HK PF07536.14 gi|154151947|ref|YP_001405565.1| - 1.8e-05 25.3 0.2 3.9e-05 24.3 0.2 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_9 PF13426.7 gi|154151947|ref|YP_001405565.1| - 8.8e-05 22.7 0.0 0.00034 20.8 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|154151947|ref|YP_001405565.1| - 0.001 19.1 0.0 0.0024 17.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|154151947|ref|YP_001405565.1| - 0.0016 18.4 0.0 0.0032 17.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|154151947|ref|YP_001405565.1| - 0.0044 17.5 0.0 0.015 15.8 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4118 PF13493.6 gi|154151947|ref|YP_001405565.1| - 0.017 14.9 8.3 0.036 13.9 8.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) SAPIS-gp6 PF16722.5 gi|154151947|ref|YP_001405565.1| - 0.03 14.7 0.5 0.057 13.8 0.5 1.4 1 0 0 1 1 1 0 Pathogenicity island protein gp6 in Staphylococcus Pkr1 PF08636.10 gi|154151947|ref|YP_001405565.1| - 0.06 13.5 2.3 3.1 8.0 2.3 2.5 2 0 0 2 2 2 0 ER protein Pkr1 CHASE4 PF05228.13 gi|154151948|ref|YP_001405566.1| - 1.2e-21 77.4 0.0 2.9e-21 76.1 0.0 1.7 1 0 0 1 1 1 1 CHASE4 domain HATPase_c PF02518.26 gi|154151948|ref|YP_001405566.1| - 6.9e-17 62.0 0.0 1.6e-16 60.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|154151948|ref|YP_001405566.1| - 1.8e-05 25.0 0.2 3.7e-05 24.0 0.2 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_2 PF13581.6 gi|154151948|ref|YP_001405566.1| - 0.00024 21.1 0.0 0.00052 20.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|154151948|ref|YP_001405566.1| - 0.0016 18.5 1.0 0.016 15.2 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|154151948|ref|YP_001405566.1| - 0.0057 16.5 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATPase PF06745.13 gi|154151949|ref|YP_001405567.1| - 2.5e-09 36.8 0.0 0.0002 20.8 0.0 2.1 2 0 0 2 2 2 2 KaiC GvpD PF07088.11 gi|154151949|ref|YP_001405567.1| - 0.016 13.9 0.0 0.027 13.1 0.0 1.4 1 0 0 1 1 1 0 GvpD gas vesicle protein CcmD PF04995.14 gi|154151950|ref|YP_001405568.1| - 0.054 13.6 1.0 0.054 13.6 1.0 2.9 3 1 0 3 3 3 0 Heme exporter protein D (CcmD) Adeno_E3_CR2 PF02439.15 gi|154151950|ref|YP_001405568.1| - 0.079 12.7 5.3 0.23 11.2 0.3 2.5 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 GPI2 PF06432.11 gi|154151950|ref|YP_001405568.1| - 0.99 8.8 7.5 1.3 8.4 3.5 2.0 1 1 1 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase Flagellar_rod PF05149.12 gi|154151952|ref|YP_001405570.1| - 0.1 12.1 0.1 0.15 11.5 0.1 1.1 1 0 0 1 1 1 0 Paraflagellar rod protein Polysacc_synt_C PF14667.6 gi|154151953|ref|YP_001405571.1| - 0.0062 16.6 0.0 0.0073 16.4 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain LPG_synthase_TM PF03706.13 gi|154151953|ref|YP_001405571.1| - 0.0065 16.0 0.2 0.0074 15.9 0.2 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region 2TM PF13239.6 gi|154151953|ref|YP_001405571.1| - 0.01 16.1 0.7 0.015 15.6 0.7 1.2 1 0 0 1 1 1 0 2TM domain SfLAP PF11139.8 gi|154151953|ref|YP_001405571.1| - 0.014 14.8 0.0 0.016 14.6 0.0 1.0 1 0 0 1 1 1 0 Sap, sulfolipid-1-addressing protein DUF373 PF04123.13 gi|154151953|ref|YP_001405571.1| - 0.015 14.7 0.0 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF2269 PF10027.9 gi|154151953|ref|YP_001405571.1| - 0.022 14.8 0.0 0.026 14.6 0.0 1.1 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) CrgA PF06781.12 gi|154151953|ref|YP_001405571.1| - 0.029 14.4 0.0 0.04 14.0 0.0 1.2 1 0 0 1 1 1 0 Cell division protein CrgA DUF4381 PF14316.6 gi|154151953|ref|YP_001405571.1| - 0.057 13.7 0.3 0.08 13.2 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Exo_endo_phos PF03372.23 gi|154151954|ref|YP_001405572.1| - 5.3e-21 75.2 0.4 8e-21 74.6 0.4 1.3 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|154151954|ref|YP_001405572.1| - 0.0012 18.6 0.0 0.0038 17.1 0.0 1.7 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase PBP_like_2 PF12849.7 gi|154151955|ref|YP_001405573.1| - 2.4e-15 57.0 18.3 4.2e-15 56.2 18.3 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|154151955|ref|YP_001405573.1| - 2e-06 27.0 0.2 6.1e-06 25.5 0.2 1.8 1 1 0 1 1 1 1 PBP superfamily domain Pilin_N PF07790.11 gi|154151955|ref|YP_001405573.1| - 0.29 12.1 9.2 0.11 13.5 6.1 2.1 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal BPD_transp_1 PF00528.22 gi|154151956|ref|YP_001405574.1| - 4.8e-23 81.8 18.4 4.8e-23 81.8 18.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|154151957|ref|YP_001405575.1| - 3.6e-24 85.5 11.5 3.6e-24 85.5 11.5 3.9 2 2 2 4 4 4 1 Binding-protein-dependent transport system inner membrane component PKD PF00801.20 gi|154151958|ref|YP_001405576.1| - 2.4e-30 104.2 20.1 1.7e-12 47.0 1.0 4.3 4 0 0 4 4 4 3 PKD domain MG2 PF01835.19 gi|154151958|ref|YP_001405576.1| - 0.014 15.8 0.1 2.4 8.7 0.0 2.9 3 0 0 3 3 3 0 MG2 domain PKD_3 PF16820.5 gi|154151958|ref|YP_001405576.1| - 0.031 14.0 0.2 4.4 7.1 0.1 2.8 2 0 0 2 2 2 0 PKD-like domain N_NLPC_P60 PF12912.7 gi|154151959|ref|YP_001405577.1| - 0.059 13.7 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 NLPC_P60 stabilising domain, N term PKD PF00801.20 gi|154151960|ref|YP_001405578.1| - 2.6e-36 123.3 41.0 2.5e-11 43.2 6.4 4.7 4 0 0 4 4 4 4 PKD domain PKD_3 PF16820.5 gi|154151960|ref|YP_001405578.1| - 2.4 8.0 4.9 6.2 6.7 0.1 2.9 3 0 0 3 3 3 0 PKD-like domain T2SSE PF00437.20 gi|154151961|ref|YP_001405579.1| - 3.4e-39 134.6 0.0 5.5e-39 133.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|154151961|ref|YP_001405579.1| - 0.059 12.9 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|154151961|ref|YP_001405579.1| - 0.12 12.8 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Pilin_N PF07790.11 gi|154151962|ref|YP_001405580.1| - 1.6e-05 25.7 3.9 5.7e-05 24.0 2.7 2.5 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Big_1 PF02369.16 gi|154151962|ref|YP_001405580.1| - 0.0012 18.8 1.2 0.0012 18.8 1.2 3.5 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 1) CcmE PF03100.15 gi|154151962|ref|YP_001405580.1| - 0.049 13.6 0.1 0.098 12.6 0.1 1.4 1 0 0 1 1 1 0 CcmE Cupredoxin_1 PF13473.6 gi|154151963|ref|YP_001405581.1| - 4.6e-11 42.8 0.0 5.8e-11 42.4 0.0 1.4 1 1 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|154151963|ref|YP_001405581.1| - 1.1e-09 38.6 1.1 2.1e-08 34.5 1.1 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DEAD PF00270.29 gi|154151964|ref|YP_001405582.1| - 2.9e-27 95.6 0.0 6e-26 91.3 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|154151964|ref|YP_001405582.1| - 4.7e-16 59.1 0.0 1e-15 58.0 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Pterin_4a PF01329.19 gi|154151965|ref|YP_001405583.1| - 1.5e-20 73.2 0.0 1.8e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase AAA PF00004.29 gi|154151966|ref|YP_001405584.1| - 2.4e-97 322.4 0.0 2.2e-49 167.2 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|154151966|ref|YP_001405584.1| - 1.9e-29 101.2 5.0 1.8e-13 50.1 0.3 3.7 3 0 0 3 3 3 2 AAA+ lid domain CDC48_N PF02359.18 gi|154151966|ref|YP_001405584.1| - 8.4e-27 93.2 0.0 6.7e-26 90.3 0.0 2.6 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|154151966|ref|YP_001405584.1| - 4.3e-15 55.8 0.0 9.4e-07 28.7 0.0 3.3 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|154151966|ref|YP_001405584.1| - 2.5e-11 43.7 0.7 0.00044 20.3 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|154151966|ref|YP_001405584.1| - 1.2e-10 41.8 0.0 8.2e-05 22.8 0.0 3.0 3 1 0 3 3 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|154151966|ref|YP_001405584.1| - 1.2e-10 42.1 6.4 9.2e-06 26.1 0.1 3.9 4 2 0 4 4 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|154151966|ref|YP_001405584.1| - 1.4e-10 40.8 0.2 2.3e-09 36.9 0.2 3.0 4 0 0 4 4 2 1 Cell division protein 48 (CDC48), domain 2 TIP49 PF06068.13 gi|154151966|ref|YP_001405584.1| - 5.6e-10 39.0 0.0 0.00088 18.6 0.0 2.9 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|154151966|ref|YP_001405584.1| - 1.1e-09 38.5 0.0 0.0011 19.2 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.6 gi|154151966|ref|YP_001405584.1| - 7.7e-09 35.9 2.9 0.016 15.5 0.1 4.5 2 2 1 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|154151966|ref|YP_001405584.1| - 3.9e-08 33.4 0.0 0.003 17.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|154151966|ref|YP_001405584.1| - 7.3e-08 33.0 0.0 0.026 15.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.17 gi|154151966|ref|YP_001405584.1| - 4e-07 30.0 0.0 0.034 13.9 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|154151966|ref|YP_001405584.1| - 1.7e-06 27.6 0.6 0.058 12.8 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|154151966|ref|YP_001405584.1| - 2e-06 28.2 0.0 0.022 15.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|154151966|ref|YP_001405584.1| - 6e-06 25.9 0.0 0.14 11.7 0.0 2.7 3 0 0 3 3 2 2 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|154151966|ref|YP_001405584.1| - 1.5e-05 24.8 0.0 0.39 10.4 0.0 3.5 4 0 0 4 4 3 2 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|154151966|ref|YP_001405584.1| - 1.6e-05 25.2 0.0 0.14 12.6 0.0 2.7 2 0 0 2 2 2 2 RNA helicase ATPase PF06745.13 gi|154151966|ref|YP_001405584.1| - 2e-05 24.1 2.1 0.47 9.7 0.1 4.0 3 1 0 4 4 4 2 KaiC Sigma54_activ_2 PF14532.6 gi|154151966|ref|YP_001405584.1| - 2.7e-05 24.3 0.0 0.077 13.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|154151966|ref|YP_001405584.1| - 3.3e-05 23.7 0.0 0.091 12.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|154151966|ref|YP_001405584.1| - 7e-05 22.7 0.0 0.68 9.8 0.0 3.3 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|154151966|ref|YP_001405584.1| - 0.00012 21.6 0.8 0.48 9.9 0.1 2.8 3 0 0 3 3 2 2 PhoH-like protein TsaE PF02367.17 gi|154151966|ref|YP_001405584.1| - 0.00017 21.6 0.0 0.53 10.3 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|154151966|ref|YP_001405584.1| - 0.00025 20.4 0.2 0.8 8.9 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin Parvo_NS1 PF01057.17 gi|154151966|ref|YP_001405584.1| - 0.00029 20.0 0.1 0.39 9.8 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_25 PF13481.6 gi|154151966|ref|YP_001405584.1| - 0.00037 20.1 10.6 2.5 7.6 0.1 4.8 3 2 0 5 5 4 1 AAA domain ABC_tran PF00005.27 gi|154151966|ref|YP_001405584.1| - 0.00039 20.9 0.0 1.1 9.8 0.0 2.7 2 0 0 2 2 2 2 ABC transporter DUF815 PF05673.13 gi|154151966|ref|YP_001405584.1| - 0.00065 18.9 0.0 0.42 9.7 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Cytidylate_kin2 PF13189.6 gi|154151966|ref|YP_001405584.1| - 0.00066 19.9 0.0 0.61 10.2 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family AAA_19 PF13245.6 gi|154151966|ref|YP_001405584.1| - 0.001 19.4 1.0 2.4 8.5 0.0 2.9 2 1 0 3 3 2 2 AAA domain TniB PF05621.11 gi|154151966|ref|YP_001405584.1| - 0.0012 18.3 0.1 9.2 5.6 0.0 4.1 3 1 1 4 4 4 0 Bacterial TniB protein AAA_17 PF13207.6 gi|154151966|ref|YP_001405584.1| - 0.0014 19.1 0.0 1.7 9.0 0.0 3.3 4 0 0 4 4 2 1 AAA domain AAA_11 PF13086.6 gi|154151966|ref|YP_001405584.1| - 0.0019 18.0 0.0 2.1 8.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain IPT PF01745.16 gi|154151966|ref|YP_001405584.1| - 0.0024 17.3 0.3 1.9 7.8 0.0 2.3 2 0 0 2 2 2 2 Isopentenyl transferase DUF2075 PF09848.9 gi|154151966|ref|YP_001405584.1| - 0.0031 16.8 0.0 1.1 8.4 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|154151966|ref|YP_001405584.1| - 0.004 16.9 1.7 2.1 8.0 0.4 2.8 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|154151966|ref|YP_001405584.1| - 0.0055 15.9 0.0 1.7 7.8 0.0 2.6 2 0 0 2 2 2 1 NB-ARC domain Rad17 PF03215.15 gi|154151966|ref|YP_001405584.1| - 0.0094 15.9 0.0 4.9 7.0 0.0 2.7 2 1 0 2 2 2 0 Rad17 P-loop domain ATP-synt_ab PF00006.25 gi|154151966|ref|YP_001405584.1| - 0.014 15.1 0.0 4.1 7.0 0.0 2.7 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain ATPase_2 PF01637.18 gi|154151966|ref|YP_001405584.1| - 0.014 15.3 0.2 3.5 7.5 0.0 3.5 2 2 0 2 2 2 0 ATPase domain predominantly from Archaea Cytidylate_kin PF02224.18 gi|154151966|ref|YP_001405584.1| - 0.016 15.0 2.9 2.5 7.8 0.1 3.1 3 0 0 3 3 3 0 Cytidylate kinase NACHT PF05729.12 gi|154151966|ref|YP_001405584.1| - 0.018 14.9 1.1 10 6.0 0.1 3.6 3 1 0 3 3 3 0 NACHT domain SKI PF01202.22 gi|154151966|ref|YP_001405584.1| - 0.022 14.9 0.0 7 6.8 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Guanylate_kin PF00625.21 gi|154151966|ref|YP_001405584.1| - 0.033 13.9 0.7 47 3.6 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase AAA_29 PF13555.6 gi|154151966|ref|YP_001405584.1| - 0.056 13.2 0.2 18 5.2 0.0 2.9 3 0 0 3 3 2 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|154151966|ref|YP_001405584.1| - 0.092 12.6 0.4 25 4.7 0.0 3.4 2 1 1 3 3 3 0 NTPase AFG1_ATPase PF03969.16 gi|154151966|ref|YP_001405584.1| - 0.13 11.1 0.0 10 4.9 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase ResIII PF04851.15 gi|154151966|ref|YP_001405584.1| - 0.14 12.2 0.0 23 4.9 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit DUF111 PF01969.17 gi|154151967|ref|YP_001405585.1| - 5.1e-111 371.4 0.6 5.8e-111 371.2 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Dak2 PF02734.17 gi|154151967|ref|YP_001405585.1| - 0.023 14.6 0.5 0.33 10.8 0.1 2.4 2 0 0 2 2 2 0 DAK2 domain FGase PF05013.12 gi|154151967|ref|YP_001405585.1| - 0.096 12.9 0.3 0.18 12.0 0.3 1.4 1 0 0 1 1 1 0 N-formylglutamate amidohydrolase Rad51 PF08423.11 gi|154151968|ref|YP_001405586.1| - 2.6e-22 79.3 0.0 3e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|154151968|ref|YP_001405586.1| - 6e-12 45.4 0.0 2.7e-11 43.3 0.0 1.8 1 1 0 1 1 1 1 KaiC RecA PF00154.21 gi|154151968|ref|YP_001405586.1| - 7.2e-09 35.5 0.0 7.7e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|154151968|ref|YP_001405586.1| - 2.9e-07 30.2 0.0 4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zot PF05707.12 gi|154151968|ref|YP_001405586.1| - 0.00078 19.1 0.0 0.00097 18.8 0.0 1.3 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.6 gi|154151968|ref|YP_001405586.1| - 0.008 15.9 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|154151968|ref|YP_001405586.1| - 0.024 15.0 0.0 0.075 13.5 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CLP1_P PF16575.5 gi|154151968|ref|YP_001405586.1| - 0.083 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_18 PF13238.6 gi|154151968|ref|YP_001405586.1| - 0.15 12.6 0.0 0.31 11.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain PAS_9 PF13426.7 gi|154151969|ref|YP_001405587.1| - 5.4e-63 209.8 0.0 9.6e-13 48.3 0.0 6.4 6 0 0 6 6 6 6 PAS domain PAS PF00989.25 gi|154151969|ref|YP_001405587.1| - 6.4e-61 203.3 0.0 3.5e-13 49.6 0.0 6.3 6 0 0 6 6 6 6 PAS fold PAS_4 PF08448.10 gi|154151969|ref|YP_001405587.1| - 1.3e-60 202.4 0.3 2.3e-18 66.4 0.0 6.3 6 0 0 6 6 6 6 PAS fold PAS_8 PF13188.7 gi|154151969|ref|YP_001405587.1| - 1.2e-46 156.0 1.1 1.6e-10 40.7 0.0 6.5 6 0 0 6 6 6 6 PAS domain PAS_3 PF08447.12 gi|154151969|ref|YP_001405587.1| - 1.8e-34 117.9 0.0 4.6e-16 58.9 0.0 5.6 6 0 0 6 6 6 4 PAS fold PAS_7 PF12860.7 gi|154151969|ref|YP_001405587.1| - 5.4e-09 36.2 0.1 0.028 14.6 0.0 6.3 6 0 0 6 6 6 1 PAS fold HTH_IclR PF09339.10 gi|154151969|ref|YP_001405587.1| - 0.00058 19.6 0.0 0.0033 17.2 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain DUF2111 PF09884.9 gi|154151969|ref|YP_001405587.1| - 0.00062 19.8 0.0 0.77 9.9 0.0 3.1 3 0 0 3 3 3 2 Uncharacterized protein conserved in archaea (DUF2111) PAS_12 PF18095.1 gi|154151969|ref|YP_001405587.1| - 0.039 13.6 0.0 9.7 5.8 0.0 3.6 4 0 0 4 4 4 0 UPF0242 C-terminal PAS-like domain HTH_23 PF13384.6 gi|154151969|ref|YP_001405587.1| - 0.068 13.0 0.1 0.2 11.5 0.1 1.9 1 0 0 1 1 1 0 Homeodomain-like domain DRY_EERY PF09750.9 gi|154151969|ref|YP_001405587.1| - 0.15 12.3 0.2 5.9 7.2 0.0 2.8 3 0 0 3 3 3 0 Alternative splicing regulator DAP_epimerase PF01678.19 gi|154151970|ref|YP_001405588.1| - 1.1e-57 193.4 0.3 6.2e-32 110.3 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|154151970|ref|YP_001405588.1| - 9.2e-05 21.6 0.0 0.03 13.4 0.0 2.1 2 0 0 2 2 2 2 Proline racemase IF-2B PF01008.17 gi|154151971|ref|YP_001405589.1| - 5.2e-81 271.9 1.8 5.9e-81 271.8 1.8 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DeoRC PF00455.22 gi|154151971|ref|YP_001405589.1| - 0.014 15.3 3.3 0.67 9.9 0.1 2.7 3 0 0 3 3 3 0 DeoR C terminal sensor domain Sua5_yciO_yrdC PF01300.18 gi|154151971|ref|YP_001405589.1| - 0.085 12.4 0.1 6 6.3 0.0 2.3 2 0 0 2 2 2 0 Telomere recombination Hydrolase PF00702.26 gi|154151972|ref|YP_001405590.1| - 2.2e-19 70.6 0.1 6.5e-19 69.0 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|154151972|ref|YP_001405590.1| - 0.00088 19.7 0.5 0.0055 17.1 0.1 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|154151972|ref|YP_001405590.1| - 0.0014 18.7 0.0 0.0055 16.8 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|154151972|ref|YP_001405590.1| - 0.0052 16.6 0.0 0.18 11.5 0.0 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|154151972|ref|YP_001405590.1| - 0.087 12.9 0.0 0.91 9.7 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase ABC_tran PF00005.27 gi|154151973|ref|YP_001405591.1| - 2.2e-55 186.9 0.0 7.7e-30 104.2 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|154151973|ref|YP_001405591.1| - 8.7e-07 29.0 3.4 0.03 14.1 0.4 3.6 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|154151973|ref|YP_001405591.1| - 3.9e-06 26.9 0.5 0.11 12.4 0.0 2.7 3 0 0 3 3 3 2 RsgA GTPase AAA_29 PF13555.6 gi|154151973|ref|YP_001405591.1| - 2.2e-05 24.1 0.3 0.11 12.3 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.19 gi|154151973|ref|YP_001405591.1| - 3.9e-05 23.2 2.6 0.04 13.4 0.0 3.9 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|154151973|ref|YP_001405591.1| - 0.00021 21.6 0.1 0.48 10.7 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.6 gi|154151973|ref|YP_001405591.1| - 0.00046 20.7 2.0 0.11 13.0 0.3 2.3 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|154151973|ref|YP_001405591.1| - 0.00079 19.3 0.3 1.1 9.2 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|154151973|ref|YP_001405591.1| - 0.0014 17.9 0.8 1 8.5 0.1 2.5 2 0 0 2 2 2 2 NB-ARC domain ATP-synt_ab PF00006.25 gi|154151973|ref|YP_001405591.1| - 0.0022 17.7 0.0 1.4 8.6 0.0 2.4 1 1 1 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain PhoH PF02562.16 gi|154151973|ref|YP_001405591.1| - 0.0031 17.0 0.1 1.1 8.7 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein PduV-EutP PF10662.9 gi|154151973|ref|YP_001405591.1| - 0.004 16.9 0.2 0.49 10.1 0.1 2.6 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_13 PF13166.6 gi|154151973|ref|YP_001405591.1| - 0.0068 15.1 0.1 0.14 10.8 0.0 2.6 3 0 0 3 3 3 1 AAA domain PRK PF00485.18 gi|154151973|ref|YP_001405591.1| - 0.007 16.1 0.1 0.89 9.3 0.0 2.5 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 gi|154151973|ref|YP_001405591.1| - 0.011 15.8 0.1 6.4 6.9 0.0 3.0 3 0 0 3 3 2 0 50S ribosome-binding GTPase TsaE PF02367.17 gi|154151973|ref|YP_001405591.1| - 0.011 15.7 0.1 3.6 7.6 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|154151973|ref|YP_001405591.1| - 0.011 15.4 0.2 2.2 8.0 0.0 3.0 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|154151973|ref|YP_001405591.1| - 0.017 15.5 1.7 3.9 7.8 0.1 2.9 2 2 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|154151973|ref|YP_001405591.1| - 0.018 14.8 0.1 5.7 6.6 0.0 2.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|154151973|ref|YP_001405591.1| - 0.053 13.4 2.4 5 7.0 0.4 3.2 3 0 0 3 3 3 0 NACHT domain DUF87 PF01935.17 gi|154151973|ref|YP_001405591.1| - 0.064 13.3 1.8 5.6 7.0 0.1 3.2 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|154151973|ref|YP_001405591.1| - 0.089 12.5 1.0 4.4 7.0 0.2 2.4 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|154151973|ref|YP_001405591.1| - 0.091 13.3 0.2 1.1 9.8 0.0 2.7 3 0 0 3 3 2 0 AAA domain SbcCD_C PF13558.6 gi|154151973|ref|YP_001405591.1| - 0.092 13.0 0.0 15 5.9 0.0 3.2 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Collectrin PF16959.5 gi|154151973|ref|YP_001405591.1| - 0.11 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Renal amino acid transporter zf-IS66 PF13005.7 gi|154151973|ref|YP_001405591.1| - 0.21 12.0 0.6 33 5.0 0.0 3.1 3 0 0 3 3 2 0 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.6 gi|154151973|ref|YP_001405591.1| - 0.21 11.1 3.8 0.24 10.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain AAA_33 PF13671.6 gi|154151973|ref|YP_001405591.1| - 0.43 10.7 3.6 3.7 7.7 0.4 3.0 2 2 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|154151973|ref|YP_001405591.1| - 1.3 9.0 3.5 7.1 6.6 0.0 3.6 4 1 1 5 5 4 0 AAA domain (dynein-related subfamily) DUF3659 PF12396.8 gi|154151974|ref|YP_001405592.1| - 0.0027 17.6 3.6 7.3 6.6 0.0 4.2 4 0 0 4 4 4 3 Protein of unknown function (DUF3659) Pro_isomerase PF00160.21 gi|154151974|ref|YP_001405592.1| - 0.011 16.1 0.3 39 4.5 0.0 3.7 4 0 0 4 4 4 0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF2102 PF09875.9 gi|154151975|ref|YP_001405593.1| - 3.3e-42 142.4 0.0 4.2e-42 142.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF2112 PF09885.9 gi|154151976|ref|YP_001405594.1| - 2.6e-62 209.1 0.0 3.2e-62 208.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) VF530 PF09905.9 gi|154151976|ref|YP_001405594.1| - 0.1 12.8 0.0 0.27 11.4 0.0 1.7 1 0 0 1 1 1 0 DNA-binding protein VF530 BcrAD_BadFG PF01869.20 gi|154151977|ref|YP_001405595.1| - 3.1e-60 204.0 4.0 4e-60 203.6 4.0 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_C PF02782.16 gi|154151977|ref|YP_001405595.1| - 0.0098 15.6 0.5 0.045 13.5 0.4 2.1 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain Peptidase_M22 PF00814.25 gi|154151977|ref|YP_001405595.1| - 0.017 14.9 0.0 6 6.5 0.0 2.3 2 0 0 2 2 2 0 Glycoprotease family CW_7 PF08230.11 gi|154151977|ref|YP_001405595.1| - 0.11 12.3 0.0 4.3 7.2 0.0 2.6 2 0 0 2 2 2 0 CW_7 repeat FtsA PF14450.6 gi|154151977|ref|YP_001405595.1| - 0.11 12.9 0.6 0.92 10.0 0.6 2.5 1 1 0 1 1 1 0 Cell division protein FtsA DUF2113 PF09886.9 gi|154151978|ref|YP_001405596.1| - 3.1e-63 212.5 0.0 3.6e-63 212.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) MCR_C PF04609.12 gi|154151979|ref|YP_001405597.1| - 6.1e-125 415.7 4.1 7.3e-125 415.5 4.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C CMD PF02627.20 gi|154151980|ref|YP_001405598.1| - 1.5e-16 60.2 0.0 2.4e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Asn_synthase PF00733.21 gi|154151981|ref|YP_001405599.1| - 2.3e-70 238.1 0.0 2.9e-70 237.7 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|154151981|ref|YP_001405599.1| - 5.6e-51 171.6 0.0 1.2e-50 170.6 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|154151981|ref|YP_001405599.1| - 3.6e-47 159.9 0.0 8.2e-47 158.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|154151981|ref|YP_001405599.1| - 0.0025 17.3 0.1 0.0058 16.1 0.1 1.6 1 1 0 1 1 1 1 Aluminium induced protein MannoseP_isomer PF01050.18 gi|154151982|ref|YP_001405600.1| - 4.1e-64 215.0 0.9 4.1e-64 215.0 0.9 1.5 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|154151982|ref|YP_001405600.1| - 8.6e-54 182.7 0.0 1.1e-52 179.1 0.0 2.0 2 0 0 2 2 2 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|154151982|ref|YP_001405600.1| - 1.1e-12 47.4 0.3 3.8e-12 45.8 0.2 1.9 2 0 0 2 2 2 1 Cupin domain NTP_transf_3 PF12804.7 gi|154151982|ref|YP_001405600.1| - 5.6e-10 39.8 0.0 1.6e-09 38.3 0.0 1.8 2 0 0 2 2 2 1 MobA-like NTP transferase domain AraC_binding PF02311.19 gi|154151982|ref|YP_001405600.1| - 0.037 13.9 0.1 0.072 13.0 0.1 1.4 1 0 0 1 1 1 0 AraC-like ligand binding domain IspD PF01128.19 gi|154151982|ref|YP_001405600.1| - 0.05 13.3 0.0 0.082 12.6 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Radical_SAM_N PF08497.10 gi|154151983|ref|YP_001405601.1| - 1.4e-121 405.3 0.0 1.9e-121 404.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|154151983|ref|YP_001405601.1| - 1.2e-28 100.3 0.0 1.9e-28 99.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|154151983|ref|YP_001405601.1| - 4.2e-17 63.0 0.0 6.1e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|154151983|ref|YP_001405601.1| - 0.024 14.7 0.0 0.24 11.5 0.0 2.4 1 1 0 1 1 1 0 B12 binding domain DUF296 PF03479.15 gi|154151984|ref|YP_001405602.1| - 1.1e-14 54.7 0.0 1.4e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain DUF2207 PF09972.9 gi|154151985|ref|YP_001405603.1| - 9.6e-78 262.1 0.3 9.6e-78 262.1 0.3 1.4 2 0 0 2 2 2 1 Predicted membrane protein (DUF2207) DUF1345 PF07077.11 gi|154151985|ref|YP_001405603.1| - 0.017 14.8 0.6 0.035 13.8 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1345) Myco_19_kDa PF05481.12 gi|154151985|ref|YP_001405603.1| - 0.055 13.7 0.1 0.14 12.5 0.1 1.7 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen FA_desaturase PF00487.24 gi|154151985|ref|YP_001405603.1| - 1.1 9.0 4.6 0.5 10.2 0.1 2.4 3 0 0 3 3 3 0 Fatty acid desaturase LemA PF04011.12 gi|154151986|ref|YP_001405604.1| - 1.7e-39 135.0 0.1 2.1e-39 134.8 0.1 1.1 1 0 0 1 1 1 1 LemA family Chordopox_A13L PF05961.11 gi|154151986|ref|YP_001405604.1| - 0.00023 21.3 0.6 0.00054 20.1 0.6 1.7 1 0 0 1 1 1 1 Chordopoxvirus A13L protein DUF948 PF06103.11 gi|154151986|ref|YP_001405604.1| - 0.0016 18.6 0.7 0.39 11.0 0.1 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF948) SurA_N_3 PF13624.6 gi|154151986|ref|YP_001405604.1| - 0.0061 16.4 0.6 0.013 15.3 0.1 1.7 2 0 0 2 2 2 1 SurA N-terminal domain PspB PF06667.12 gi|154151986|ref|YP_001405604.1| - 0.0068 16.4 0.6 0.013 15.6 0.6 1.5 1 0 0 1 1 1 1 Phage shock protein B Phasin PF05597.11 gi|154151986|ref|YP_001405604.1| - 0.011 15.7 0.0 0.069 13.2 0.0 2.0 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) EzrA PF06160.12 gi|154151986|ref|YP_001405604.1| - 0.013 13.8 0.1 0.013 13.8 0.1 2.1 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA AIP3 PF03915.13 gi|154151986|ref|YP_001405604.1| - 0.029 13.5 0.0 0.034 13.3 0.0 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 DUF4083 PF13314.6 gi|154151986|ref|YP_001405604.1| - 0.049 13.6 2.5 0.1 12.6 2.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) DUF4381 PF14316.6 gi|154151986|ref|YP_001405604.1| - 0.12 12.6 0.1 0.18 12.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) DUF16 PF01519.16 gi|154151986|ref|YP_001405604.1| - 0.12 12.9 0.6 5.6 7.5 0.1 2.4 1 1 0 2 2 2 0 Protein of unknown function DUF16 SOAR PF16533.5 gi|154151986|ref|YP_001405604.1| - 0.14 12.1 0.2 7.6 6.6 0.1 2.3 1 1 1 2 2 2 0 STIM1 Orai1-activating region FeoB_associated PF12669.7 gi|154151986|ref|YP_001405604.1| - 0.31 11.5 1.9 0.53 10.7 1.9 1.3 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein ASFV_J13L PF05568.11 gi|154151986|ref|YP_001405604.1| - 7.9 6.2 5.9 19 4.9 0.1 2.1 2 0 0 2 2 2 0 African swine fever virus J13L protein GTP_EFTU_D2 PF03144.25 gi|154151987|ref|YP_001405605.1| - 5.5e-10 39.5 0.4 1.1e-09 38.5 0.4 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|154151987|ref|YP_001405605.1| - 0.015 15.2 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 Elongation factor Tu domain 4 PMT_2 PF13231.6 gi|154151988|ref|YP_001405606.1| - 0.0018 18.5 19.2 0.0018 18.5 19.2 3.2 1 1 2 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase GtrA PF04138.14 gi|154151989|ref|YP_001405607.1| - 2.3e-26 92.3 9.5 3.9e-26 91.6 9.5 1.4 1 0 0 1 1 1 1 GtrA-like protein Glycos_transf_2 PF00535.26 gi|154151989|ref|YP_001405607.1| - 3.2e-25 88.9 0.0 4.4e-25 88.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|154151989|ref|YP_001405607.1| - 7.6e-10 39.1 0.0 1.1e-09 38.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|154151989|ref|YP_001405607.1| - 0.0047 16.4 0.0 0.0095 15.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 PMT_2 PF13231.6 gi|154151990|ref|YP_001405608.1| - 3.8e-25 89.0 21.5 3.8e-25 89.0 21.5 2.8 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Nuc_deoxyrib_tr PF05014.15 gi|154151991|ref|YP_001405609.1| - 1.1e-26 93.4 0.1 1.7e-26 92.7 0.1 1.3 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|154151991|ref|YP_001405609.1| - 5e-19 68.6 0.0 7e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like DUF523 PF04463.12 gi|154151991|ref|YP_001405609.1| - 3e-05 24.1 0.0 5.7e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF4406 PF14359.6 gi|154151991|ref|YP_001405609.1| - 0.0023 18.4 0.0 0.0036 17.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4406) LDcluster4 PF18306.1 gi|154151991|ref|YP_001405609.1| - 0.11 12.1 0.1 0.17 11.5 0.1 1.2 1 0 0 1 1 1 0 SLOG cluster4 family Nuc_deoxyri_tr3 PF11071.8 gi|154151991|ref|YP_001405609.1| - 0.18 11.9 0.1 0.32 11.0 0.1 1.4 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase YtoQ Ribo_biogen_C PF04034.13 gi|154151992|ref|YP_001405610.1| - 1.5e-41 141.0 0.0 1.8e-41 140.8 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|154151992|ref|YP_001405610.1| - 4.7e-07 29.5 0.1 7.8e-07 28.8 0.1 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI RNA_Me_trans PF04252.13 gi|154151992|ref|YP_001405610.1| - 0.0085 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase Gp_dh_C PF02800.20 gi|154151993|ref|YP_001405611.1| - 5.1e-25 87.9 0.1 7.8e-25 87.3 0.1 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|154151993|ref|YP_001405611.1| - 2.8e-10 40.4 0.4 1.3e-09 38.2 0.1 2.3 3 0 0 3 3 3 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|154151993|ref|YP_001405611.1| - 6.3e-07 29.7 1.0 2.3e-06 27.9 0.0 2.5 3 1 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|154151993|ref|YP_001405611.1| - 4.1e-05 23.8 0.1 4.1e-05 23.8 0.1 2.3 3 0 0 3 3 3 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|154151993|ref|YP_001405611.1| - 5.7e-05 22.5 1.4 0.0022 17.4 0.2 2.6 2 1 1 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|154151993|ref|YP_001405611.1| - 0.00013 22.2 0.2 0.00029 21.1 0.2 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|154151993|ref|YP_001405611.1| - 0.0019 18.8 0.6 0.048 14.3 0.1 2.5 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|154151993|ref|YP_001405611.1| - 0.0048 17.7 0.1 0.033 15.0 0.0 2.2 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold PglD_N PF17836.1 gi|154151993|ref|YP_001405611.1| - 0.028 15.1 0.1 0.083 13.5 0.1 1.9 1 0 0 1 1 1 0 PglD N-terminal domain NAD_binding_2 PF03446.15 gi|154151993|ref|YP_001405611.1| - 0.056 13.6 0.2 0.28 11.4 0.2 2.1 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|154151993|ref|YP_001405611.1| - 0.15 12.7 2.4 0.28 11.8 0.8 2.3 2 1 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent tRNA-synt_1b PF00579.25 gi|154151994|ref|YP_001405612.1| - 1.6e-51 175.4 0.0 1.9e-51 175.2 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|154151994|ref|YP_001405612.1| - 0.00042 19.3 0.0 0.44 9.4 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|154151994|ref|YP_001405612.1| - 0.17 10.1 0.0 0.23 9.7 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) RIO1 PF01163.22 gi|154151995|ref|YP_001405613.1| - 1.9e-59 200.4 0.0 3e-59 199.8 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|154151995|ref|YP_001405613.1| - 0.00035 20.0 0.0 0.27 10.6 0.0 2.2 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|154151995|ref|YP_001405613.1| - 0.0027 17.7 0.1 0.056 13.4 0.0 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family KH_1 PF00013.29 gi|154151996|ref|YP_001405614.1| - 1.4e-13 50.4 3.2 3.5e-08 33.2 0.5 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|154151996|ref|YP_001405614.1| - 5.9e-06 26.0 4.0 0.00019 21.2 0.6 2.6 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|154151996|ref|YP_001405614.1| - 0.22 11.4 9.2 0.51 10.3 0.3 3.4 2 2 1 3 3 3 0 KH domain DEAD PF00270.29 gi|154151997|ref|YP_001405615.1| - 8e-22 77.8 0.0 1.6e-21 76.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|154151997|ref|YP_001405615.1| - 1.9e-09 37.8 0.0 1.7e-08 34.8 0.0 2.4 2 1 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|154151997|ref|YP_001405615.1| - 4.3e-07 30.1 0.0 7.4e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|154151997|ref|YP_001405615.1| - 9.2e-06 26.2 0.6 2.7e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_30 PF13604.6 gi|154151997|ref|YP_001405615.1| - 0.021 14.6 0.0 0.056 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain DNA_pol_lambd_f PF10391.9 gi|154151997|ref|YP_001405615.1| - 0.021 14.7 0.0 0.058 13.2 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda CGI-121 PF08617.10 gi|154151998|ref|YP_001405616.1| - 0.0039 17.3 0.0 0.0046 17.1 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 MoCF_biosynth PF00994.24 gi|154151999|ref|YP_001405617.1| - 6.3e-34 116.7 0.2 8.1e-34 116.4 0.2 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanoregula_boonei_6A8_uid58815/NC_009712.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanoregula_boonei_6A8_uid58815/NC_009712.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanoregula_boonei_6A8_uid58815/NC_009712.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanoregula_boonei_6A8_uid58815/NC_009712.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:04:21 2019 # [ok]